##gff-version 3
#!gff-spec-version 1.21
#!processor NCBI annotwriter
#!genome-build ASM906v1
#!genome-build-accession NCBI_Assembly:GCA_000009065.1
##sequence-region AL590842.1 1 4653728
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=214092
AL590842.1	EMBL	region	1	4653728	.	+	.	ID=id0;Dbxref=taxon:214092;Is_circular=true;gbkey=Src;mol_type=genomic DNA;note=biovar:Orientalis;strain=CO92
AL590842.1	EMBL	gene	271	711	.	-	.	ID=gene0;Name=YPO0001;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0001
AL590842.1	EMBL	CDS	271	711	.	-	0	ID=cds0;Parent=gene0;Dbxref=GOA:Q7CLF0,InterPro:IPR001094,InterPro:IPR008254,InterPro:IPR029039,UniProtKB/TrEMBL:Q7CLF0,NCBI_GP:CAL18691.1;Name=CAL18691.1;Note=Similar to the FMN-binding domain of many flavoproteins e.g. Salmonella typhimurium sulfite reductase [NADPH] flavoprotein alpha-component CysJ SW:CYSJ_SALTY (P38039) (598 aa) fasta scores: E(): 3.8e-06%2C 32.0%25 id in 128 aa. Also highly similar over entire range to Escherichia coli MioC protein%2C the fuction of which in a chromosomal context%2C is unknown SW:MIOC_ECOLI (P03817) (146 aa) fasta scores: E(): 0%2C 66.9%25 id in 145 aa;gbkey=CDS;product=putative flavoprotein;protein_id=CAL18691.1;transl_table=11
AL590842.1	EMBL	gene	804	1265	.	-	.	ID=gene1;Name=asnC;gbkey=Gene;gene=asnC;gene_biotype=protein_coding;locus_tag=YPO0002
AL590842.1	EMBL	CDS	804	1265	.	-	0	ID=cds1;Parent=gene1;Dbxref=GOA:Q7CLE9,InterPro:IPR000485,InterPro:IPR011008,InterPro:IPR011991,InterPro:IPR019885,InterPro:IPR019887,InterPro:IPR019888,UniProtKB/TrEMBL:Q7CLE9,NCBI_GP:CAL18692.1;Name=CAL18692.1;Note=Similar to the Escherichia coli regulator of AnsA: AsnC SW:ASNC_ECOLI (P03809) (152 aa) fasta scores: E(): 0%2C84.8%25 id in 151 aa;gbkey=CDS;gene=asnC;product=regulatory protein;protein_id=CAL18692.1;transl_table=11
AL590842.1	EMBL	sequence_feature	870	1175	.	-	.	ID=id1;Note=Pfam match to entry PF01037 ASNC_trans_reg%2C AsnC family%2C score 63.50%2C E-value 4.4e-15;gbkey=misc_feature;gene=asnC;inference=protein motif:PFAM:PF01037
AL590842.1	EMBL	sequence_feature	1113	1193	.	-	.	ID=id2;Note=PS00519 Bacterial regulatory proteins%2C asnC family signature.;gbkey=misc_feature;gene=asnC;inference=protein motif:ProSite:PS00519
AL590842.1	EMBL	sequence_feature	1131	1196	.	-	.	ID=id3;Note=Predicted helix-turn-helix motif with score 1363 (+3.83 SD) at aa 6-27%2C sequence TPYAELAKNLAVSPGTIHVRVE;gbkey=misc_feature;gene=asnC
AL590842.1	EMBL	gene	1435	2427	.	+	.	ID=gene2;Name=asnA;gbkey=Gene;gene=asnA;gene_biotype=protein_coding;locus_tag=YPO0003
AL590842.1	EMBL	CDS	1435	2427	.	+	0	ID=cds2;Parent=gene2;Dbxref=GOA:Q8ZJT3,InterPro:IPR004618,InterPro:IPR006195,NCBI_GP:CAL18693.1;Name=CAL18693.1;Note=Similar to Escherichia coli aspartate-ammonia ligase AsnA SW:ASNA_ECOLI (P00963) (330 aa) fasta scores: E(): 0%2C78.5%25 id in 330 aa;gbkey=CDS;gene=asnA;product=aspartate-ammonia ligase;protein_id=CAL18693.1;transl_table=11
AL590842.1	EMBL	gene	2526	3992	.	-	.	ID=gene3;Name=YPO0004;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0004
AL590842.1	EMBL	CDS	2526	3992	.	-	0	ID=cds3;Parent=gene3;Dbxref=InterPro:IPR002035,InterPro:IPR008912,InterPro:IPR023481,NCBI_GP:CAL18694.1;Name=CAL18694.1;Note=Similar to Vibrio cholerae hypothetical protein VCA0762 TR:Q9KLI2 (EMBL:AE004404) (481 aa) fasta scores: E(): 0%2C 34.1%25 id in 496 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004404;product=conserved hypothetical protein;protein_id=CAL18694.1;transl_table=11
AL590842.1	EMBL	gene	3996	5549	.	-	.	ID=gene4;Name=YPO0005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0005
AL590842.1	EMBL	CDS	3996	5549	.	-	0	ID=cds4;Parent=gene4;Dbxref=GOA:Q8ZJT1,InterPro:IPR003593,InterPro:IPR011704,InterPro:IPR022547,InterPro:IPR023671,InterPro:IPR027417,NCBI_GP:CAL18695.1;Name=CAL18695.1;Note=Similar to Escherichia coli hypothetical protein YieN SW:YIEN_ECOLI (P31473) (498 aa) fasta scores: E(): 0%2C67.8%25 id in 497 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL18695.1;transl_table=11
AL590842.1	EMBL	gene	5823	7691	.	+	.	ID=gene5;Name=kup;gbkey=Gene;gene=kup;gene_biotype=protein_coding;gene_synonym=trkD;locus_tag=YPO0006
AL590842.1	EMBL	CDS	5823	7691	.	+	0	ID=cds5;Parent=gene5;Dbxref=GOA:Q8ZJT0,InterPro:IPR003855,InterPro:IPR023051,NCBI_GP:CAL18696.1;Name=CAL18696.1;Note=Similar to Escherichia coli low affinity potassium uptake system protein Kup SW:KUP_ECOLI (P30016) (622 aa) fasta scores: E(): 0%2C 84.2%25 id in 622 aa;gbkey=CDS;gene=kup;inference=protein motif:TMHMM:2.0;product=potassium transport protein;protein_id=CAL18696.1;transl_table=11
AL590842.1	EMBL	sequence_feature	5841	5909	.	+	.	ID=id4;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kup;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	5952	6020	.	+	.	ID=id5;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kup;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	6126	6194	.	+	.	ID=id6;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kup;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	6222	6290	.	+	.	ID=id7;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kup;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	6324	6392	.	+	.	ID=id8;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kup;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	6450	6518	.	+	.	ID=id9;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kup;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	6555	6623	.	+	.	ID=id10;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kup;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	6681	6749	.	+	.	ID=id11;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kup;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	6825	6893	.	+	.	ID=id12;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kup;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	6909	6977	.	+	.	ID=id13;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kup;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	6996	7064	.	+	.	ID=id14;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kup;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	7077	7145	.	+	.	ID=id15;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kup;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	7896	8315	.	+	.	ID=gene6;Name=YPO0007;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0007
AL590842.1	EMBL	CDS	7896	8315	.	+	0	ID=cds6;Parent=gene6;Dbxref=GOA:Q7CLE5,InterPro:IPR007721,InterPro:IPR023064,InterPro:IPR023750,NCBI_GP:CAL18697.1;Name=CAL18697.1;Note=Similar to Lactobacillus sake ribose permease RbsD TR:Q9X4M4 (EMBL:AF115391) (131 aa) fasta scores: E(): 5.7e-18%2C 39.6%25 id in 139 aa%2C and to Escherichia coli high affinity ribose transport protein RbsD SW:RBSD_ECOLI (P04982) (151 aa) fasta scores: E(): 0%2C 68.3%25 id in 139 aa. Although lacks the first 12 amino acids of the E. coli protein;gbkey=CDS;inference=similar to sequence:INSDC:AF115391;product=ribose permease;protein_id=CAL18697.1;transl_table=11
AL590842.1	EMBL	gene	8366	9292	.	+	.	ID=gene7;Name=rbsK;gbkey=Gene;gene=rbsK;gene_biotype=protein_coding;locus_tag=YPO0008
AL590842.1	EMBL	CDS	8366	9292	.	+	0	ID=cds7;Parent=gene7;Dbxref=GOA:Q7CLE4,InterPro:IPR002139,InterPro:IPR002173,InterPro:IPR011611,InterPro:IPR011877,InterPro:IPR029056,UniProtKB/TrEMBL:Q7CLE4,NCBI_GP:CAL18698.1;Name=CAL18698.1;Note=Similar to Escherichia coli ribokinase RbsK SW:RBSK_ECOLI (P05054) (309 aa) fasta scores: E(): 0%2C 71.4%25 id in 304 aa;gbkey=CDS;gene=rbsK;product=ribokinase;protein_id=CAL18698.1;transl_table=11
AL590842.1	EMBL	sequence_feature	8483	9142	.	+	.	ID=id16;Note=Pfam match to entry PF00294 pfkB%2C pfkB family carbohydrate kinase%2C score 228.70%2C E-value 8.3e-65;gbkey=misc_feature;gene=rbsK;inference=protein motif:PF00294
AL590842.1	EMBL	sequence_feature	8483	8557	.	+	.	ID=id17;Note=PS00583 pfkB family of carbohydrate kinases signature 1.;gbkey=misc_feature;gene=rbsK;inference=protein motif:ProSite:PS00583
AL590842.1	EMBL	sequence_feature	9107	9148	.	+	.	ID=id18;Note=PS00584 pfkB family of carbohydrate kinases signature 2.;gbkey=misc_feature;gene=rbsK;inference=protein motif:ProSite:PS00584
AL590842.1	EMBL	gene	9512	10936	.	-	.	ID=gene8;Name=YPO0009;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0009
AL590842.1	EMBL	CDS	9512	10936	.	-	0	ID=cds8;Parent=gene8;Dbxref=GOA:Q7CLE3,InterPro:IPR001411,InterPro:IPR004638,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q7CLE3,NCBI_GP:CAL18699.1;Name=CAL18699.1;Note=Similar to many proteins belonging to the major facilitator family of drug resistance translocases e.g. Neisseria gonorrhoeae efflux transporter membrane protein AgrA TR:BAB13740 (EMBL:AB032563) (468 aa) fasta scores: E(): 0%2C 45.4%25 id in 460 aa Also highly similar to Escherichia coli hypothetical 51.5 kDa protein in rbsr-rrsc intergenic region yieO SW:YIEO_ECOLI (P31474) (475 aa) fasta scores: E(): 0%2C 74.2%25 id in 457 aa;gbkey=CDS;inference=similar to sequence:INSDC:AB032563;product=putative membrane transport protein;protein_id=CAL18699.1;transl_table=11
AL590842.1	EMBL	sequence_feature	9590	9655	.	-	.	ID=id19;Note=one of 14 probable transmembrane helices predicted forYPO0009 by TMHMM2.0;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	9701	9766	.	-	.	ID=id20;Note=one of 14 probable transmembrane helices predicted forYPO0009 by TMHMM2.0;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	9803	9868	.	-	.	ID=id21;Note=one of 14 probable transmembrane helices predicted forYPO0009 by TMHMM2.0;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	9899	9964	.	-	.	ID=id22;Note=one of 14 probable transmembrane helices predicted forYPO0009 by TMHMM2.0;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	10001	10066	.	-	.	ID=id23;Note=one of 14 probable transmembrane helices predicted forYPO0009 by TMHMM2.0;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	10082	10147	.	-	.	ID=id24;Note=one of 14 probable transmembrane helices predicted forYPO0009 by TMHMM2.0;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	10208	10258	.	-	.	ID=id25;Note=one of 14 probable transmembrane helices predicted forYPO0009 by TMHMM2.0;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	10289	10354	.	-	.	ID=id26;Note=one of 14 probable transmembrane helices predicted forYPO0009 by TMHMM2.0;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	10394	10450	.	-	.	ID=id27;Note=one of 14 probable transmembrane helices predicted forYPO0009 by TMHMM2.0;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	10463	10528	.	-	.	ID=id28;Note=one of 14 probable transmembrane helices predicted forYPO0009 by TMHMM2.0;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	10565	10618	.	-	.	ID=id29;Note=one of 14 probable transmembrane helices predicted forYPO0009 by TMHMM2.0;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	10634	10699	.	-	.	ID=id30;Note=one of 14 probable transmembrane helices predicted forYPO0009 by TMHMM2.0;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	10739	10804	.	-	.	ID=id31;Note=one of 14 probable transmembrane helices predicted forYPO0009 by TMHMM2.0;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	10850	10915	.	-	.	ID=id32;Note=one of 14 probable transmembrane helices predicted forYPO0009 by TMHMM2.0;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	11016	11705	.	-	.	ID=gene9;Name=YPO0010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0010
AL590842.1	EMBL	CDS	11016	11705	.	-	0	ID=cds9;Parent=gene9;Dbxref=GOA:Q7CLE2,InterPro:IPR000524,InterPro:IPR008920,InterPro:IPR011711,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CLE2,NCBI_GP:CAL18700.1;Name=CAL18700.1;Note=Similar to several including: Streptomyces coelicolor putative GntR-famly transcriptional regulator scf37.08 TR:Q9RJZ3 (EMBL:AL133210) (246 aa) fasta scores: E(): 6.5e-18%2C 32.6%25 id in 215 aa and Escherichia coli hypothetical protein YieP SW:YIEP_ECOLI (P31475) (181 aa) fasta scores: E(): 0%2C 64.1%25 id in 181 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL133210;product=putative GntR-famly transcriptional regulator;protein_id=CAL18700.1;transl_table=11
AL590842.1	EMBL	sequence_feature	11475	11654	.	-	.	ID=id33;Note=Pfam match to entry PF00392 gntR%2C Bacterial regulatory proteins%2C gntR family%2C score 77.00%2C E-value 3.1e-22;gbkey=misc_feature;inference=protein motif:PF00392
AL590842.1	EMBL	sequence_feature	11523	11597	.	-	.	ID=id34;Note=PS00043 Bacterial regulatory proteins%2C gntR family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00043
AL590842.1	EMBL	sequence_feature	11529	11594	.	-	.	ID=id35;Note=Predicted helix-turn-helix motif with score 1101 (+2.94 SD) at aa 38-59%2C sequence PGEIELGEQFGVSRTAVREAVK;gbkey=misc_feature
AL590842.1	EMBL	gene	12292	13763	.	+	.	ID=gene10;Name=16S_rRNA;gbkey=Gene;gene=16S_rRNA;gene_biotype=rRNA
AL590842.1	EMBL	rRNA	12292	13763	.	+	.	ID=rna0;Parent=gene10;Note=match to 16S_rRNA 1..1472 (EMBL:YPE16SA);gbkey=rRNA;gene=16S_rRNA
AL590842.1	EMBL	exon	12292	13763	.	+	.	ID=id36;Parent=rna0;Note=match to 16S_rRNA 1..1472 (EMBL:YPE16SA);gbkey=rRNA;gene=16S_rRNA
AL590842.1	EMBL	tRNA	13944	14019	.	+	.	ID=rna1;Note=tRNA Glu anticodon TTC%2C Cove score 56.95;gbkey=tRNA;product=tRNA-Glu
AL590842.1	EMBL	exon	13944	14019	.	+	.	ID=id37;Parent=rna1;Note=tRNA Glu anticodon TTC%2C Cove score 56.95;gbkey=tRNA;product=tRNA-Glu
AL590842.1	EMBL	gene	14272	17178	.	+	.	ID=gene11;Name=23S_rRNA;gbkey=Gene;gene=23S_rRNA;gene_biotype=rRNA
AL590842.1	EMBL	rRNA	14272	17178	.	+	.	ID=rna2;Parent=gene11;Note=match to 23S_rRNA 1..2906 ~~96 %25 ID U77925 (Y. enterocolitica 23S);gbkey=rRNA;gene=23S_rRNA
AL590842.1	EMBL	exon	14272	17178	.	+	.	ID=id38;Parent=rna2;Note=match to 23S_rRNA 1..2906 ~~96 %25 ID U77925 (Y. enterocolitica 23S);gbkey=rRNA;gene=23S_rRNA
AL590842.1	EMBL	gene	17178	17411	.	+	.	ID=gene12;Name=5S_rRNA;gbkey=Gene;gene=5S_rRNA;gene_biotype=rRNA
AL590842.1	EMBL	rRNA	17178	17411	.	+	.	ID=rna3;Parent=gene12;Note=match to 5SrRNA 1..234 blast score 1149 percent identity 99 (incl. 23S-5S spacer);gbkey=rRNA;gene=5S_rRNA
AL590842.1	EMBL	exon	17178	17411	.	+	.	ID=id39;Parent=rna3;Note=match to 5SrRNA 1..234 blast score 1149 percent identity 99 (incl. 23S-5S spacer);gbkey=rRNA;gene=5S_rRNA
AL590842.1	EMBL	repeat_region	17835	19149	.	+	.	ID=id40;Note=insertion sequence:IS285;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	17835	17863	.	+	.	ID=id41;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	17906	19114	.	+	.	ID=gene13;Name=y1062;gbkey=Gene;gene=y1062;gene_biotype=protein_coding;gene_synonym=ypmt1.80C;locus_tag=YPO0011
AL590842.1	EMBL	CDS	17906	19114	.	+	0	ID=cds10;Parent=gene13;Dbxref=GOA:O68779,InterPro:IPR001207,UniProtKB/TrEMBL:O68779,NCBI_GP:CAL18701.1;Name=CAL18701.1;Note=Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa.;gbkey=CDS;gene=y1062;inference=similar to sequence:INSDC:AF053947;product=transposase for the IS285 insertion element;protein_id=CAL18701.1;transl_table=11
AL590842.1	EMBL	sequence_feature	17906	19042	.	+	.	ID=id42;Note=Pfam match to entry PF00872 Transpo_mutator%2CTransposase%2C Mutator family%2C score 430.40%2C E-value 1.6e-125;gbkey=misc_feature;gene=y1062;inference=protein motif:PF00872
AL590842.1	EMBL	sequence_feature	18599	18673	.	+	.	ID=id43;Note=PS01007 Transposases%2C Mutator family%2C signature.;gbkey=misc_feature;gene=y1062;inference=protein motif:ProSite:PS01007
AL590842.1	EMBL	INVERTED	19121	19149	.	-	.	ID=id44;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	19172	19702	.	-	.	ID=gene14;Name=mobB;gbkey=Gene;gene=mobB;gene_biotype=protein_coding;locus_tag=YPO0012
AL590842.1	EMBL	CDS	19172	19702	.	-	0	ID=cds11;Parent=gene14;Dbxref=GOA:Q0WKT0,InterPro:IPR004435,InterPro:IPR027417,InterPro:IPR029007,UniProtKB/TrEMBL:Q0WKT0,NCBI_GP:CAL18702.1;Name=CAL18702.1;Note=Similar to Escherichia coli molybdopterin-guanine dinucleotide biosynthesis protein B%2C MobB SW:MOBB_ECOLI (P32125) (174 aa) fasta scores: E(): 0%2C 62.2%25 id in 164 aa;gbkey=CDS;gene=mobB;product=probable molybdopterin-guanine dinucleotide biosynthesis protein B;protein_id=CAL18702.1;transl_table=11
AL590842.1	EMBL	sequence_feature	19643	19666	.	-	.	ID=id45;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=mobB;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	19702	20343	.	-	.	ID=gene15;Name=chlB;gbkey=Gene;gene=chlB;gene_biotype=protein_coding;gene_synonym=mob,mobA,nar;locus_tag=YPO0013
AL590842.1	EMBL	CDS	19702	20343	.	-	0	ID=cds12;Parent=gene15;Dbxref=GOA:Q8ZJS4,InterPro:IPR013482,InterPro:IPR025877,InterPro:IPR029044,NCBI_GP:CAL18703.1;Name=CAL18703.1;Note=Similar to Escherichia coli molybdopterin-guanine dinucleotide biosynthesis protein A%2C MobA SW:MOBA_ECOLI (P32173) (194 aa) fasta scores: E(): 3.1e-31%2C 43.8%25 id in 194 aa%2C and to Vibrio cholerae molybdopterin-guanine dinucleotide biosynthesis protein A vc1526 TR:Q9KRV8 (EMBL:AE004231) (203 aa) fasta scores: E(): 6.2e-30%2C 46.6%25 id in 204 aa;gbkey=CDS;gene=chlB;inference=similar to sequence:INSDC:AE004231;product=molybdopterin-guanine dinucleotide biosynthesis protein A;protein_id=CAL18703.1;transl_table=11
AL590842.1	EMBL	gene	20443	20712	.	+	.	ID=gene16;Name=YPO0013a;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0013a
AL590842.1	EMBL	CDS	20443	20712	.	+	0	ID=cds13;Parent=gene16;Dbxref=InterPro:IPR009383,UniProtKB/TrEMBL:Q7CG24,NCBI_GP:CAL18704.1;Name=CAL18704.1;Note=Similar to Pectobacterium carotovorum subsp. cartovorum hypothetical protein YihD TR:Q9RB12 (EMBL:AF146615) (89 aa) fasta scores: E(): 6.2e-31%2C 83.1%25 id in 89 aa and to Escherichia coli hypothetical protein YihD SW:YIHD_ECOLI (P32126) (89 aa) fasta scores: E(): 1.7e-28%2C 76.4%25 id in 89 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF146615;product=conserved hypothetical protein;protein_id=CAL18704.1;transl_table=11
AL590842.1	EMBL	gene	20792	21778	.	+	.	ID=gene17;Name=YPO0014;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0014
AL590842.1	EMBL	CDS	20792	21778	.	+	0	ID=cds14;Parent=gene17;Dbxref=GOA:Q7CG25,InterPro:IPR002575,InterPro:IPR011009,UniProtKB/TrEMBL:Q7CG25,NCBI_GP:CAL18705.1;Name=CAL18705.1;Note=Similar to Pectobacterium carotovorum subsp. cartovorum hypothetical protein YihE TR:Q9RB11 (EMBL:AF146615) (328 aa) fasta scores: E(): 0%2C 74.1%25 id in 328 aa and to Escherichia coli hypothetical YihE SW:YIHE_ECOLI (P32127) (328 aa) fasta scores: E(): 0%2C 66.2%25 id in 328 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF146615;product=conserved hypothetical protein;protein_id=CAL18705.1;transl_table=11
AL590842.1	EMBL	gene	21806	22429	.	+	.	ID=gene18;Name=dsbA;gbkey=Gene;gene=dsbA;gene_biotype=protein_coding;locus_tag=YPO0015
AL590842.1	EMBL	CDS	21806	22429	.	+	0	ID=cds15;Parent=gene18;Dbxref=GOA:Q9XBV2,InterPro:IPR001853,InterPro:IPR012336,InterPro:IPR017937,InterPro:IPR023205,NCBI_GP:CAL18706.1;Name=CAL18706.1;Note=Previously sequenced Yersinia pestis thiol:disulfide interchange protein DsbA SW:DSBA_YERPE (Q9XBV2) (207 aa) fasta scores: E(): 0%2C 100.0%25 id in 207 aa. Also highly similar to Erwinia carotovora thiol:disulfide interchange protein DsbA precursor SW:DSBA_ERWCA (Q9RB10) (207 aa) fasta scores: E(): 0%2C 81.6%25 id in 207 aa;gbkey=CDS;gene=dsbA;product=secreted thiol:disulfide interchange protein DsbA;protein_id=CAL18706.1;transl_table=11
AL590842.1	EMBL	sequence_feature	21806	22426	.	+	.	ID=id46;Note=Pfam match to entry PF01323 DSBA%2C DSBA oxidoreductase%2C score 469.50%2C E-value 2.7e-137;gbkey=misc_feature;gene=dsbA;inference=protein motif:PF01323
AL590842.1	EMBL	sequence_feature	21818	21871	.	+	.	ID=id47;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=dsbA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	21926	21982	.	+	.	ID=id48;Note=PS00194 Thioredoxin family active site.;gbkey=misc_feature;gene=dsbA;inference=protein motif:ProSite:PS00194
AL590842.1	EMBL	gene	22921	25719	.	+	.	ID=gene19;Name=polA;gbkey=Gene;gene=polA;gene_biotype=protein_coding;gene_synonym=resA;locus_tag=YPO0017
AL590842.1	EMBL	CDS	22921	25719	.	+	0	ID=cds16;Parent=gene19;Dbxref=GOA:Q7CG26,InterPro:IPR001098,InterPro:IPR002298,InterPro:IPR002421,InterPro:IPR002562,InterPro:IPR003583,InterPro:IPR008918,InterPro:IPR012337,InterPro:IPR018320,InterPro:IPR019760,InterPro:IPR020045,InterPro:IPR020046,InterPro:IPR029060,UniProtKB/TrEMBL:Q7CG26,NCBI_GP:CAL18707.1;Name=CAL18707.1;Note=Highly similar to Escherichia coli DNA polymerase I SW:DPO1_ECOLI (P00582) (928 aa) fasta scores: E(): 0%2C 77.7%25 id in 933 aa;gbkey=CDS;gene=polA;product=DNA polymerase I;protein_id=CAL18707.1;transl_table=11
AL590842.1	EMBL	sequence_feature	22939	23793	.	+	.	ID=id49;Note=Pfam match to entry PF01367 5_3_exonuclease%2C 5'-3' exonuclease%2C score 539.20%2C E-value 2.9e-158;gbkey=misc_feature;gene=polA;inference=protein motif:PF01367
AL590842.1	EMBL	sequence_feature	23971	24483	.	+	.	ID=id50;Note=Pfam match to entry PF01612 3_5_exonuclease%2C 3'-5' exonuclease%2C score 181.90%2C E-value 1e-50;gbkey=misc_feature;gene=polA;inference=protein motif:PF01612
AL590842.1	EMBL	sequence_feature	24985	25608	.	+	.	ID=id51;Note=Pfam match to entry PF00476 DNA_pol_A%2C DNA polymerase family A%2C score 387.80%2C E-value 1.1e-112;gbkey=misc_feature;gene=polA;inference=protein motif:PF00476
AL590842.1	EMBL	sequence_feature	25189	25248	.	+	.	ID=id52;Note=PS00447 DNA polymerase family A signature.;gbkey=misc_feature;gene=polA;inference=protein motif:ProSite:PS00447
AL590842.1	EMBL	gene	25879	25982	.	+	.	ID=gene20;Name=spf;gbkey=Gene;gene=spf;gene_biotype=misc_RNA
AL590842.1	EMBL	transcript	25879	25982	.	+	.	ID=rna4;Parent=gene20;Note=RNA feature: spf Spot 42 RNA. Due to transposon insertion this feature is a single base shorter than the E. coli spf gene.;gbkey=misc_RNA;gene=spf
AL590842.1	EMBL	exon	25879	25982	.	+	.	ID=id53;Parent=rna4;Note=RNA feature: spf Spot 42 RNA. Due to transposon insertion this feature is a single base shorter than the E. coli spf gene.;gbkey=misc_RNA;gene=spf
AL590842.1	EMBL	repeat_region	25983	26694	.	+	.	ID=id54;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	26128	26586	.	+	.	ID=gene21;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO0018
AL590842.1	EMBL	CDS	26128	26586	.	+	0	ID=cds17;Parent=gene21;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL18708.1;Name=CAL18708.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Also identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL18708.1;transl_table=11
AL590842.1	EMBL	sequence_feature	26182	26493	.	+	.	ID=id55;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	26838	27488	.	-	.	ID=gene22;Name=YPO0019;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0019
AL590842.1	EMBL	CDS	26838	27488	.	-	0	ID=cds18;Parent=gene22;Dbxref=GOA:Q8ZJS0,InterPro:IPR006073,InterPro:IPR019987,InterPro:IPR027417,NCBI_GP:CAL18709.1;Name=CAL18709.1;Note=Similar to Escherichia coli hypothetical GTP-binding protein YihA SW:YIHA_ECOLI (P24253) (210 aa) fasta scores: E(): 0%2C 81.1%25 id in 212 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL18709.1;transl_table=11
AL590842.1	EMBL	sequence_feature	27363	27386	.	-	.	ID=id56;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	28233	28799	.	+	.	ID=gene23;Name=YPO0020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0020
AL590842.1	EMBL	CDS	28233	28799	.	+	0	ID=cds19;Parent=gene23;Dbxref=GOA:Q8ZJR9,InterPro:IPR007336,NCBI_GP:CAL18710.1;Name=CAL18710.1;Note=Similar to Salmonella typhimurium hypothetical protein YihI SW:YIHI_SALTY (P37130) (171 aa) fasta scores: E(): 3.7e-26%2C 51.9%25 id in 183 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL18710.1;transl_table=11
AL590842.1	EMBL	gene	28982	30355	.	+	.	ID=gene24;Name=hemN;gbkey=Gene;gene=hemN;gene_biotype=protein_coding;locus_tag=YPO0021
AL590842.1	EMBL	CDS	28982	30355	.	+	0	ID=cds20;Parent=gene24;Dbxref=GOA:Q0WKS1,InterPro:IPR004558,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR010723,InterPro:IPR023404,UniProtKB/TrEMBL:Q0WKS1,NCBI_GP:CAL18711.1;Name=CAL18711.1;Note=Highly similar to Escherichia coli oxygen-independent coproporphyrinogen III oxidase HemN SW:HEMN_ECOLI (P32131) (457 aa) fasta scores: E(): 0%2C 78.6%25 id in 457 aa;gbkey=CDS;gene=hemN;product=oxygen-independent coproporphyrinogen III oxidase;protein_id=CAL18711.1;transl_table=11
AL590842.1	EMBL	sequence_feature	29276	30037	.	+	.	ID=id57;Note=Pfam match to entry PF02473 Coprogen_an_ox%2C %2C score 551.60%2C E-value 5.2e-162;gbkey=misc_feature;gene=hemN;inference=protein motif:PF02473
AL590842.1	EMBL	gene	30409	31821	.	-	.	ID=gene25;Name=glnG;gbkey=Gene;gene=glnG;gene_biotype=protein_coding;gene_synonym=glnT,ntrC;locus_tag=YPO0022
AL590842.1	EMBL	CDS	30409	31821	.	-	0	ID=cds21;Parent=gene25;Dbxref=GOA:Q0WKS0,InterPro:IPR001789,InterPro:IPR002078,InterPro:IPR002197,InterPro:IPR003593,InterPro:IPR009057,InterPro:IPR010114,InterPro:IPR011006,InterPro:IPR025662,InterPro:IPR025943,InterPro:IPR025944,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WKS0,NCBI_GP:CAL18712.1;Name=CAL18712.1;Note=Highly similar to Escherichia coli nitrogen regulation protein NtrC SW:NTRC_ECOLI (P06713) (469 aa) fasta scores: E(): 0%2C 90.2%25 id in 470 aa;gbkey=CDS;gene=glnG;product=nitrogen regulation protein;protein_id=CAL18712.1;transl_table=11
AL590842.1	EMBL	sequence_feature	30427	30492	.	-	.	ID=id58;Note=Predicted helix-turn-helix motif with score 1763 (+5.19 SD) at aa 444-465%2C sequence GHKQEAARLLGWGRNTLTRKLK;gbkey=misc_feature;gene=glnG
AL590842.1	EMBL	sequence_feature	30706	31401	.	-	.	ID=id59;Note=Pfam match to entry PF00158 sigma54%2C Sigma-54 transcription factors%2C score 491.30%2C E-value 7.6e-144;gbkey=misc_feature;gene=glnG;inference=protein motif:PF00158
AL590842.1	EMBL	sequence_feature	30733	30762	.	-	.	ID=id60;Note=PS00688 Sigma-54 interaction domain C-terminal part signature.;gbkey=misc_feature;gene=glnG;inference=protein motif:ProSite:PS00688
AL590842.1	EMBL	sequence_feature	31288	31329	.	-	.	ID=id61;Note=PS00675 Sigma-54 interaction domain ATP-binding region A signature.;gbkey=misc_feature;gene=glnG;inference=protein motif:ProSite:PS00675
AL590842.1	EMBL	sequence_feature	31477	31812	.	-	.	ID=id62;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 148.80%2C E-value 9.3e-41;gbkey=misc_feature;gene=glnG;inference=protein motif:PF00072
AL590842.1	EMBL	gene	31829	32878	.	-	.	ID=gene26;Name=glnR;gbkey=Gene;gene=glnR;gene_biotype=protein_coding;gene_synonym=glnl,ntrB;locus_tag=YPO0023
AL590842.1	EMBL	CDS	31829	32878	.	-	0	ID=cds22;Parent=gene26;Dbxref=GOA:Q0WKR9,InterPro:IPR000014,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR013767,UniProtKB/TrEMBL:Q0WKR9,NCBI_GP:CAL18713.1;Name=CAL18713.1;Note=Similar to Escherichia coli nitrogen regulation protein NtrB SW:NTRB_ECOLI (P06712) (349 aa) fasta scores: E(): 0%2C 86.5%25 id in 349 aa;gbkey=CDS;gene=glnR;product=Two component regulatory protein involved in nitrogen assimilation;protein_id=CAL18713.1;transl_table=11
AL590842.1	EMBL	sequence_feature	31841	32464	.	-	.	ID=id63;Note=Pfam match to entry PF00512 signal%2C Histidine kinase%2C score 236.30%2C E-value 4.3e-67;gbkey=misc_feature;gene=glnR;inference=protein motif:PF00512
AL590842.1	EMBL	gene	33131	34540	.	-	.	ID=gene27;Name=glnA;gbkey=Gene;gene=glnA;gene_biotype=protein_coding;locus_tag=YPO0024
AL590842.1	EMBL	CDS	33131	34540	.	-	0	ID=cds23;Parent=gene27;Dbxref=GOA:Q74YC3,InterPro:IPR001637,InterPro:IPR004809,InterPro:IPR008146,InterPro:IPR008147,InterPro:IPR014746,InterPro:IPR027302,InterPro:IPR027303,UniProtKB/TrEMBL:Q74YC3,NCBI_GP:CAL18714.1;Name=CAL18714.1;Note=Highly similar to Escherichia coli glutamine synthetase GlnA SW:GLNA_ECOLI (P06711) (468 aa) fasta scores: E(): 0%2C 91.5%25 id in 468 aa;gbkey=CDS;gene=glnA;product=glutamine synthetase;protein_id=CAL18714.1;transl_table=11
AL590842.1	EMBL	sequence_feature	33347	33385	.	-	.	ID=id64;Note=PS00182 Glutamine synthetase class-I adenylation site.;gbkey=misc_feature;gene=glnA;inference=protein motif:ProSite:PS00182
AL590842.1	EMBL	sequence_feature	33425	34495	.	-	.	ID=id65;Note=Pfam match to entry PF00120 gln-synt%2C Glutamine synthetase%2C score 829.70%2C E-value 1.1e-263;gbkey=misc_feature;gene=glnA;inference=protein motif:PF00120
AL590842.1	EMBL	sequence_feature	33719	33766	.	-	.	ID=id66;Note=PS00181 Glutamine synthetase putative ATP-binding region signature.;gbkey=misc_feature;gene=glnA;inference=protein motif:ProSite:PS00181
AL590842.1	EMBL	sequence_feature	34337	34393	.	-	.	ID=id67;Note=PS00180 Glutamine synthetase signature 1.;gbkey=misc_feature;gene=glnA;inference=protein motif:ProSite:PS00180
AL590842.1	EMBL	gene	34726	34884	.	-	.	ID=gene28;Name=YPO0025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0025
AL590842.1	EMBL	CDS	34726	34884	.	-	0	ID=cds24;Parent=gene28;Dbxref=UniProtKB/TrEMBL:Q74YC2,NCBI_GP:CAL18715.1;Name=CAL18715.1;Note=Doubtful CDS%2C No significant database hits;gbkey=CDS;product=possible membrane protein;protein_id=CAL18715.1;transl_table=11
AL590842.1	EMBL	sequence_feature	34783	34839	.	-	.	ID=id68;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	35102	36925	.	+	.	ID=gene29;Name=bipA;gbkey=Gene;gene=bipA;gene_biotype=protein_coding;gene_synonym=typA;locus_tag=YPO0026
AL590842.1	EMBL	CDS	35102	36925	.	+	0	ID=cds25;Parent=gene29;Dbxref=GOA:Q7CG28,InterPro:IPR000640,InterPro:IPR000795,InterPro:IPR004161,InterPro:IPR005225,InterPro:IPR006298,InterPro:IPR009000,InterPro:IPR009022,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CG28,NCBI_GP:CAL18716.1;Name=CAL18716.1;Note=Similar to Salmonella typhimurium GTPase BipA TR:CAC14270 (EMBL:AJ276889) (607 aa) fasta scores: E(): 0%2C89.1%25 id in 606 aa and to Escherichia coli GTP-binding protein BipA which has shown to be important for virulence of EPEC strains. SW:TYPA_ECOLI (P32132) (591 aa) fasta scores: E(): 0%2C 89.3%25 id in 591 aa;gbkey=CDS;gene=bipA;inference=similar to sequence:INSDC:AJ276889;product=putative GTPase;protein_id=CAL18716.1;transl_table=11
AL590842.1	EMBL	sequence_feature	35108	36277	.	+	.	ID=id69;Note=Pfam match to entry PF00009 GTP_EFTU%2C Elongation factor Tu family%2C score 368.90%2C E-value 1.1e-108;gbkey=misc_feature;gene=bipA;inference=protein motif:PF00009
AL590842.1	EMBL	sequence_feature	35135	35158	.	+	.	ID=id70;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=bipA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	35231	35278	.	+	.	ID=id71;Note=PS00301 GTP-binding elongation factors signature.;gbkey=misc_feature;gene=bipA;inference=protein motif:ProSite:PS00301
AL590842.1	EMBL	gene	37247	37837	.	+	.	ID=gene30;Name=YPO0027;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0027
AL590842.1	EMBL	CDS	37247	37837	.	+	0	ID=cds26;Parent=gene30;Dbxref=GOA:Q7CG29,InterPro:IPR006439,InterPro:IPR023198,InterPro:IPR023214,UniProtKB/TrEMBL:Q7CG29,NCBI_GP:CAL18717.1;Name=CAL18717.1;Note=Similar to Escherichia coli hypothetical protein YihX SW:YIHX_ECOLI (P32145) (199 aa) fasta scores: E(): 0%2C67.2%25 id in 195 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL18717.1;transl_table=11
AL590842.1	EMBL	sequence_feature	37247	37807	.	+	.	ID=id72;Note=Pfam match to entry PF00702 Hydrolase%2C haloacid dehalogenase-like hydrolase%2C score 74.60%2C E-value 2e-18;gbkey=misc_feature;inference=protein motif:PF00702
AL590842.1	EMBL	gene	37934	38818	.	+	.	ID=gene31;Name=rbn;gbkey=Gene;gene=rbn;gene_biotype=protein_coding;locus_tag=YPO0028
AL590842.1	EMBL	CDS	37934	38818	.	+	0	ID=cds27;Parent=gene31;Dbxref=GOA:Q8ZJR1,InterPro:IPR017039,InterPro:IPR023679,NCBI_GP:CAL18718.1;Name=CAL18718.1;Note=Similar to Escherichia coli ribonuclease BN Rbn necessary for the 3' maturation of tRNA SW:RBN_ECOLI (P32146) (290 aa) fasta scores: E(): 0%2C 69.9%25 id in 279 aa. Note the differing N-terminal region of these proteins.;gbkey=CDS;gene=rbn;inference=protein motif:TMHMM:2.0;product=ribonuclease BN;protein_id=CAL18718.1;transl_table=11
AL590842.1	EMBL	sequence_feature	38048	38116	.	+	.	ID=id73;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=rbn;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	38153	38206	.	+	.	ID=id74;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=rbn;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	38234	38293	.	+	.	ID=id75;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=rbn;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	38351	38419	.	+	.	ID=id76;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=rbn;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	38477	38536	.	+	.	ID=id77;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=rbn;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	38573	38641	.	+	.	ID=id78;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=rbn;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	38669	38737	.	+	.	ID=id79;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=rbn;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	38825	39262	.	+	.	ID=gene32;Name=YPO0029;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0029
AL590842.1	EMBL	CDS	38825	39262	.	+	0	ID=cds28;Parent=gene32;Dbxref=GOA:P58534,InterPro:IPR003732,InterPro:IPR023509,NCBI_GP:CAL18719.1;Name=CAL18719.1;Note=Similar to Escherichia coli O157:H7 hypothetical protein YihZ TR:AAG59077 (EMBL:AE005619) (145 aa) fasta scores: E(): 0%2C 75.9%25 id in 145 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE005619;product=conserved hypothetical protein;protein_id=CAL18719.1;transl_table=11
AL590842.1	EMBL	repeat_region	39270	41223	.	-	.	ID=id80;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	39270	39297	.	+	.	ID=id81;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	39336	40118	.	-	.	ID=gene33;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO0030
AL590842.1	EMBL	CDS	39336	40118	.	-	0	ID=cds29;Parent=gene33;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL18720.1;Name=CAL18720.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL18720.1;transl_table=11
AL590842.1	EMBL	sequence_feature	39411	39950	.	-	.	ID=id82;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	39768	39791	.	-	.	ID=id83;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	40115	41137	.	-	.	ID=gene34;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO0031
AL590842.1	EMBL	CDS	40115	41137	.	-	0	ID=cds30;Parent=gene34;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL18721.1;Name=CAL18721.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL18721.1;transl_table=11
AL590842.1	EMBL	sequence_feature	40259	40792	.	-	.	ID=id84;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	sequence_feature	41021	41086	.	-	.	ID=id85;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	41030	41113	.	-	.	ID=id86;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	INVERTED	41196	41223	.	-	.	ID=id87;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	41407	42330	.	+	.	ID=gene35;Name=YPO0032;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0032
AL590842.1	EMBL	CDS	41407	42330	.	+	0	ID=cds31;Parent=gene35;Dbxref=GOA:Q7CLA6,InterPro:IPR000182,InterPro:IPR012660,InterPro:IPR016181,InterPro:IPR029069,UniProtKB/TrEMBL:Q7CLA6,NCBI_GP:CAL18722.1;Name=CAL18722.1;Note=Similar to Escherichia coli hypothetical protein YiiD SW:YIID_ECOLI (P32148) (329 aa) fasta scores: E(): 0%2C83.9%25 id in 298 aa. Note lacks the first 16 amino acids of the E. coli orthologue.;gbkey=CDS;product=conserved membrane protein;protein_id=CAL18722.1;transl_table=11
AL590842.1	EMBL	sequence_feature	41557	41775	.	+	.	ID=id88;Note=Pfam match to entry PF00583 Acetyltransf%2CAcetyltransferase (GNAT) family%2C score 56.50%2C E-value 5.8e-13;gbkey=misc_feature;inference=protein motif:PF00583
AL590842.1	EMBL	sequence_feature	41677	41742	.	+	.	ID=id89;Note=Predicted helix-turn-helix motif with score 1005 (+2.61 SD) at aa 91-112%2C sequence MTLESVARQEGVKRVVCSARED;gbkey=misc_feature
AL590842.1	EMBL	sequence_feature	42010	42078	.	+	.	ID=id90;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	42465	44174	.	-	.	ID=gene36;Name=YPO0033;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0033
AL590842.1	EMBL	CDS	42465	44174	.	-	0	ID=cds32;Parent=gene36;Dbxref=InterPro:IPR007844,UniProtKB/TrEMBL:Q7CLA7,NCBI_GP:CAL18723.1;Name=CAL18723.1;Note=Similar to Escherichia coli hypothetical protein YicH SW:YICH_ECOLI (P31433) (569 aa) fasta scores: E(): 0%2C49.0%25 id in 563 aa;gbkey=CDS;product=possible exported protein;protein_id=CAL18723.1;transl_table=11
AL590842.1	EMBL	sequence_feature	44088	44153	.	-	.	ID=id91;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	44322	45707	.	-	.	ID=gene37;Name=YPO0034;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0034
AL590842.1	EMBL	CDS	44322	45707	.	-	0	ID=cds33;Parent=gene37;Dbxref=GOA:Q0WKQ8,InterPro:IPR006042,InterPro:IPR006043,UniProtKB/TrEMBL:Q0WKQ8,NCBI_GP:CAL18724.1;Name=CAL18724.1;Note=Similar to Escherichia coli putative purine permease YicE SW:YICE_ECOLI (P27432) (463 aa) fasta scores: E(): 0%2C84.0%25 id in 462 aa and to Vibrio cholerae xanthine/uracil permease family protein vc2712 TR:Q9KNM0 (EMBL:AE004337) (480 aa) fasta scores: E(): 0%2C 69.1%25 id in 450 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004337;product=putative membrane permease;protein_id=CAL18724.1;transl_table=11
AL590842.1	EMBL	sequence_feature	44337	44393	.	-	.	ID=id92;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	44424	44489	.	-	.	ID=id93;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	44427	45614	.	-	.	ID=id94;Note=Pfam match to entry PF00860 xan_ur_permease%2CXanthine/uracil permeases family%2C score 527.60%2C E-value 8.7e-155;gbkey=misc_feature;inference=protein motif:PF00860
AL590842.1	EMBL	sequence_feature	44511	44576	.	-	.	ID=id95;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	44526	44588	.	-	.	ID=id96;Note=PS01116 Xanthine/uracil permeases family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01116
AL590842.1	EMBL	sequence_feature	44592	44657	.	-	.	ID=id97;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	44862	44927	.	-	.	ID=id98;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	44988	45053	.	-	.	ID=id99;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	45075	45131	.	-	.	ID=id100;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	45177	45242	.	-	.	ID=id101;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	45264	45329	.	-	.	ID=id102;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	45360	45425	.	-	.	ID=id103;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	45516	45581	.	-	.	ID=id104;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	45945	47159	.	+	.	ID=gene38;Name=gltC;gbkey=Gene;gene=gltC;gene_biotype=protein_coding;gene_synonym=gltS;locus_tag=YPO0035
AL590842.1	EMBL	CDS	45945	47159	.	+	0	ID=cds34;Parent=gene38;Dbxref=GOA:Q7CLA8,InterPro:IPR004445,UniProtKB/TrEMBL:Q7CLA8,NCBI_GP:CAL18725.1;Name=CAL18725.1;Note=Highly similar to Escherichia coli sodium/glutamate symport carrier protein GltS SW:GLTS_ECOLI (P19933) (401 aa) fasta scores: E(): 0%2C 82.5%25 id in 399 aa;gbkey=CDS;gene=gltC;inference=protein motif:TMHMM:2.0;product=sodium/glutamate symport carrier protein;protein_id=CAL18725.1;transl_table=11
AL590842.1	EMBL	sequence_feature	45954	46007	.	+	.	ID=id105;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	46041	46109	.	+	.	ID=id106;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	46152	46205	.	+	.	ID=id107;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	46224	46292	.	+	.	ID=id108;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	46413	46481	.	+	.	ID=id109;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	46581	46649	.	+	.	ID=id110;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	46677	46745	.	+	.	ID=id111;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	46764	46820	.	+	.	ID=id112;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	46848	46916	.	+	.	ID=id113;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	46953	47021	.	+	.	ID=id114;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	47064	47132	.	+	.	ID=id115;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	47525	49606	.	-	.	ID=gene39;Name=recG;gbkey=Gene;gene=recG;gene_biotype=protein_coding;locus_tag=YPO0036
AL590842.1	EMBL	CDS	47525	49606	.	-	0	ID=cds35;Parent=gene39;Dbxref=GOA:Q7CLA9,InterPro:IPR001650,InterPro:IPR004365,InterPro:IPR004609,InterPro:IPR011545,InterPro:IPR012340,InterPro:IPR014001,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CLA9,NCBI_GP:CAL18726.1;Name=CAL18726.1;Note=Similar to Escherichia coli ATP-dependent DNA helicase RecG SW:RECG_ECOLI (P24230) (693 aa) fasta scores: E(): 0%2C 81.5%25 id in 693 aa;gbkey=CDS;gene=recG;product=ATP-dependent DNA helicase;protein_id=CAL18726.1;transl_table=11
AL590842.1	EMBL	sequence_feature	47840	48103	.	-	.	ID=id116;Note=Pfam match to entry PF00271 helicase_C%2C Helicases conserved C-terminal domain%2C score 77.80%2C E-value 2.3e-19;gbkey=misc_feature;gene=recG;inference=protein motif:PF00271
AL590842.1	EMBL	sequence_feature	48185	48832	.	-	.	ID=id117;Note=Pfam match to entry PF00270 DEAD%2C DEAD/DEAH box helicase%2C score 92.40%2C E-value 2.6e-28;gbkey=misc_feature;gene=recG;inference=protein motif:PF00270
AL590842.1	EMBL	sequence_feature	48698	48721	.	-	.	ID=id118;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=recG;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	49199	49423	.	-	.	ID=id119;Note=Pfam match to entry PF01336 tRNA_anti%2C tRNA synthetase anti-codon binding domain%2C score 25.70%2C E-value 0.0011;gbkey=misc_feature;gene=recG;inference=protein motif:PF01336
AL590842.1	EMBL	gene	49607	50299	.	-	.	ID=gene40;Name=spoU;gbkey=Gene;gene=spoU;gene_biotype=protein_coding;gene_synonym=trmH;locus_tag=YPO0037
AL590842.1	EMBL	CDS	49607	50299	.	-	0	ID=cds36;Parent=gene40;Dbxref=GOA:Q7CLB0,InterPro:IPR001537,InterPro:IPR022724,InterPro:IPR029026,InterPro:IPR029028,UniProtKB/TrEMBL:Q7CLB0,NCBI_GP:CAL18727.1;Name=CAL18727.1;Note=Similar to Escherichia coli tRNA (guanosine-2'-O-)-methyltransferase%2C TrmH SW:TRMH_ECOLI (P19396) (229 aa) fasta scores: E(): 0%2C 82.8%25 id in 227 aa;gbkey=CDS;gene=spoU;product=tRNA (guanosine-2'-O-)-methyltransferase;protein_id=CAL18727.1;transl_table=11
AL590842.1	EMBL	sequence_feature	49823	50173	.	-	.	ID=id120;Note=Pfam match to entry PF00588 SpoU_methylase%2C SpoU rRNA Methylase family%2C score 96.50%2C E-value 5.2e-25;gbkey=misc_feature;gene=spoU;inference=protein motif:PF00588
AL590842.1	EMBL	gene	50305	52413	.	-	.	ID=gene41;Name=spoT;gbkey=Gene;gene=spoT;gene_biotype=protein_coding;locus_tag=YPO0038
AL590842.1	EMBL	CDS	50305	52413	.	-	0	ID=cds37;Parent=gene41;Dbxref=GOA:Q7CLB1,InterPro:IPR002912,InterPro:IPR003607,InterPro:IPR004095,InterPro:IPR004811,InterPro:IPR007685,InterPro:IPR012675,InterPro:IPR012676,UniProtKB/TrEMBL:Q7CLB1,NCBI_GP:CAL18728.1;Name=CAL18728.1;Note=Similar to Escherichia coli guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphydrolase%2Cmediator of the stringent response%2C SpoT SW:SPOT_ECOLI (P17580) (702 aa) fasta scores: E(): 0%2C 91.3%25 id in 702 aa;gbkey=CDS;gene=spoT;product=guanosine-3'%2C5'-bisbis(diphosphate) 3'-pyrophosphydrolase;protein_id=CAL18728.1;transl_table=11
AL590842.1	EMBL	gene	52433	52708	.	-	.	ID=gene42;Name=rpoZ;gbkey=Gene;gene=rpoZ;gene_biotype=protein_coding;locus_tag=YPO0039
AL590842.1	EMBL	CDS	52433	52708	.	-	0	ID=cds38;Parent=gene42;Dbxref=GOA:Q8ZJQ3,InterPro:IPR003716,InterPro:IPR006110,InterPro:IPR012293,NCBI_GP:CAL18729.1;Name=CAL18729.1;Note=Similar to Escherichia coli DNA-directed RNA polymerase omega chain RpoZ SW:RPOZ_ECOLI (P08374) (91 aa) fasta scores: E(): 6.2e-29%2C 92.3%25 id in 91 aa;gbkey=CDS;gene=rpoZ;product=DNA-directed RNA polymerase%2C omega chain;protein_id=CAL18729.1;transl_table=11
AL590842.1	EMBL	gene	52763	53386	.	-	.	ID=gene43;Name=gmk;gbkey=Gene;gene=gmk;gene_biotype=protein_coding;gene_synonym=spoR;locus_tag=YPO0040
AL590842.1	EMBL	CDS	52763	53386	.	-	0	ID=cds39;Parent=gene43;Dbxref=GOA:Q8ZJQ2,InterPro:IPR008144,InterPro:IPR008145,InterPro:IPR017665,InterPro:IPR020590,InterPro:IPR027417,NCBI_GP:CAL18730.1;Name=CAL18730.1;Note=Similar to Escherichia coli guanylate kinase Gmk SW:KGUA_ECOLI (P24234) (207 aa) fasta scores: E(): 0%2C 87.9%25 id in 207 aa;gbkey=CDS;gene=gmk;product=guanylate kinase;protein_id=CAL18730.1;transl_table=11
AL590842.1	EMBL	sequence_feature	52952	53266	.	-	.	ID=id121;Note=Pfam match to entry PF00625 Guanylate_kin%2C Guanylate kinase%2C score 189.60%2C E-value 4.9e-53;gbkey=misc_feature;gene=gmk;inference=protein motif:PF00625
AL590842.1	EMBL	sequence_feature	53216	53269	.	-	.	ID=id122;Note=PS00856 Guanylate kinase signature.;gbkey=misc_feature;gene=gmk;inference=protein motif:ProSite:PS00856
AL590842.1	EMBL	sequence_feature	53333	53356	.	-	.	ID=id123;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=gmk;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	53787	55490	.	+	.	ID=gene44;Name=YPO0041;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0041
AL590842.1	EMBL	CDS	53787	55490	.	+	0	ID=cds40;Parent=gene44;Dbxref=GOA:Q7CLB2,InterPro:IPR003583,InterPro:IPR004150,InterPro:IPR010994,InterPro:IPR012340,InterPro:IPR013839,InterPro:IPR013840,InterPro:IPR020923,NCBI_GP:CAL18731.1;Name=CAL18731.1;Note=Similar to Chlamydia trachomatis DNA ligase LigA SW:DNLJ_CHLTR (O84148) (663 aa) fasta scores: E(): 3.1e-07%2C24.0%25 id in 555 aa%2C and to Escherichia coli hypothetical protein YicF SW:YICF_ECOLI (P25772) (560 aa) fasta scores: E(): 0%2C 43.8%25 id in 564 aa;gbkey=CDS;product=putative DNA ligase;protein_id=CAL18731.1;transl_table=11
AL590842.1	EMBL	sequence_feature	53787	53855	.	+	.	ID=id124;Note=PS00430 TonB-dependent receptor proteins signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS00430
AL590842.1	EMBL	sequence_feature	53889	54734	.	+	.	ID=id125;Note=Pfam match to entry PF01653 DNA_ligase_N%2CNAD-dependent DNA ligase%2C score 117.70%2C E-value 2.2e-31;gbkey=misc_feature;inference=protein motif:PF01653
AL590842.1	EMBL	sequence_feature	55344	55409	.	+	.	ID=id126;Note=Predicted helix-turn-helix motif with score 1148 (+3.10 SD) at aa 520-541%2C sequence RSLSEWATMAGIGQMRAKQIKH;gbkey=misc_feature
AL590842.1	EMBL	gene	55503	56126	.	-	.	ID=gene45;Name=YPO0042;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0042
AL590842.1	EMBL	CDS	55503	56126	.	-	0	ID=cds41;Parent=gene45;Dbxref=InterPro:IPR005115,UniProtKB/TrEMBL:Q7CLB3,NCBI_GP:CAL18732.1;Name=CAL18732.1;Note=Similar to Escherichia coli hypothetical protein YicG SW:YICG_ECOLI (P31432) (205 aa) fasta scores: E(): 0%2C74.2%25 id in 182 aa and to Escherichia coli O157:H7 orf%2Chypothetical protein YicG TR:AAG58790 (EMBL:AE005592) (223 aa) fasta scores: E(): 0%2C 74.2%25 id in 182 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE005592;product=putative membrane protein;protein_id=CAL18732.1;transl_table=11
AL590842.1	EMBL	sequence_feature	55545	55610	.	-	.	ID=id127;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	55641	55706	.	-	.	ID=id128;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	55728	55793	.	-	.	ID=id129;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	55806	55862	.	-	.	ID=id130;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	55884	55934	.	-	.	ID=id131;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	55980	56036	.	-	.	ID=id132;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	56529	57392	.	-	.	ID=gene46;Name=YPO0043;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0043
AL590842.1	EMBL	CDS	56529	57392	.	-	0	ID=cds42;Parent=gene46;Dbxref=InterPro:IPR005229,InterPro:IPR013527,InterPro:IPR013551,UniProtKB/TrEMBL:Q7CLB4,NCBI_GP:CAL18733.1;Name=CAL18733.1;Note=Similar to Escherichia coli hypothetical protein YicC SW:YICC_ECOLI (P23839) (287 aa) fasta scores: E(): 0%2C87.5%25 id in 287 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL18733.1;transl_table=11
AL590842.1	EMBL	gene	57519	58235	.	+	.	ID=gene47;Name=rph;gbkey=Gene;gene=rph;gene_biotype=protein_coding;locus_tag=YPO0044
AL590842.1	EMBL	CDS	57519	58235	.	+	0	ID=cds43;Parent=gene47;Dbxref=GOA:Q8ZJP8,InterPro:IPR001247,InterPro:IPR002381,InterPro:IPR015847,InterPro:IPR018336,InterPro:IPR020568,InterPro:IPR027408,NCBI_GP:CAL18734.1;Name=CAL18734.1;Note=Similar to Escherichia coli ribonuclease PH Rph SW:RNPH_ECOLI (P03842) (238 aa) fasta scores: E(): 0%2C 87.7%25 id in 236 aa;gbkey=CDS;gene=rph;product=ribonuclease PH;protein_id=CAL18734.1;transl_table=11
AL590842.1	EMBL	sequence_feature	57522	58190	.	+	.	ID=id133;Note=Pfam match to entry PF01138 RNase_PH%2C 3' exoribonuclease family%2C score 293.00%2C E-value 3.8e-84;gbkey=misc_feature;gene=rph;inference=protein motif:PF01138
AL590842.1	EMBL	sequence_feature	57864	57902	.	+	.	ID=id134;Note=PS01277 Ribonuclease PH signature.;gbkey=misc_feature;gene=rph;inference=protein motif:ProSite:PS01277
AL590842.1	EMBL	gene	58402	59049	.	+	.	ID=gene48;Name=pyrE;gbkey=Gene;gene=pyrE;gene_biotype=protein_coding;locus_tag=YPO0045
AL590842.1	EMBL	CDS	58402	59049	.	+	0	ID=cds44;Parent=gene48;Dbxref=GOA:Q8ZJP7,InterPro:IPR000836,InterPro:IPR004467,InterPro:IPR023031,InterPro:IPR029057,NCBI_GP:CAL18735.1;Name=CAL18735.1;Note=Similar to Escherichia coli orotate phosphoribosyltransferase PyrE%2C involved in pyrimidine biosynthesis SW:PYRE_ECOLI (P00495) (212 aa) fasta scores: E(): 0%2C 85.8%25 id in 212 aa;gbkey=CDS;gene=pyrE;product=orotate phosphoribosyltransferase;protein_id=CAL18735.1;transl_table=11
AL590842.1	EMBL	sequence_feature	58495	58956	.	+	.	ID=id135;Note=Pfam match to entry PF00156 Pribosyltran%2CPhosphoribosyl transferase domain%2C score 96.50%2C E-value 5.1e-25;gbkey=misc_feature;gene=pyrE;inference=protein motif:PF00156
AL590842.1	EMBL	sequence_feature	58759	58797	.	+	.	ID=id136;Note=PS00103 Purine/pyrimidine phosphoribosyl transferases signature.;gbkey=misc_feature;gene=pyrE;inference=protein motif:ProSite:PS00103
AL590842.1	EMBL	gene	59184	59780	.	-	.	ID=gene49;Name=ttk;gbkey=Gene;gene=ttk;gene_biotype=protein_coding;locus_tag=YPO0046
AL590842.1	EMBL	CDS	59184	59780	.	-	0	ID=cds45;Parent=gene49;Dbxref=GOA:Q8ZJP6,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR011075,InterPro:IPR015893,InterPro:IPR023769,InterPro:IPR023772,NCBI_GP:CAL18736.1;Name=CAL18736.1;Note=Similar to Escherichia coli Ttk regulatory protein SW:TTK_ECOLI (P06969) (198 aa) fasta scores: E(): 0%2C 83.3%25 id in 198 aa;gbkey=CDS;gene=ttk;product=TetR-family regulatory protein;protein_id=CAL18736.1;transl_table=11
AL590842.1	EMBL	sequence_feature	59595	59738	.	-	.	ID=id137;Note=Pfam match to entry PF00440 tetR%2C Bacterial regulatory proteins%2C tetR family%2C score 39.00%2C E-value 2e-08;gbkey=misc_feature;gene=ttk;inference=protein motif:PF00440
AL590842.1	EMBL	sequence_feature	59607	59699	.	-	.	ID=id138;Note=PS01081 Bacterial regulatory proteins%2C tetR family signature.;gbkey=misc_feature;gene=ttk;inference=protein motif:ProSite:PS01081
AL590842.1	EMBL	sequence_feature	59622	59687	.	-	.	ID=id139;Note=Predicted helix-turn-helix motif with score 1905 (+5.68 SD) at aa 32-53%2C sequence ITTAKLAANVGVSEAALYRHFP;gbkey=misc_feature;gene=ttk
AL590842.1	EMBL	gene	59902	60357	.	-	.	ID=gene50;Name=dnaS;gbkey=Gene;gene=dnaS;gene_biotype=protein_coding;gene_synonym=dut,sof;locus_tag=YPO0047
AL590842.1	EMBL	CDS	59902	60357	.	-	0	ID=cds46;Parent=gene50;Dbxref=GOA:Q8ZJP5,InterPro:IPR008180,InterPro:IPR008181,InterPro:IPR029054,NCBI_GP:CAL18737.1;Name=CAL18737.1;Note=Similar to Escherichia coli deoxyuridine 5'-triphosphate nucleotidohydrolase Dut%2C involved in nucleotide metabolism SW:DUT_ECOLI (P06968) (151 aa) fasta scores: E(): 0%2C 84.8%25 id in 151 aa;gbkey=CDS;gene=dnaS;product=deoxyuridine 5'-triphosphate nucleotidohydrolase;protein_id=CAL18737.1;transl_table=11
AL590842.1	EMBL	sequence_feature	59911	60213	.	-	.	ID=id140;Note=Pfam match to entry PF00692 dUTPase%2C dUTPase%2C score 92.70%2C E-value 7.4e-24;gbkey=misc_feature;gene=dnaS;inference=protein motif:PF00692
AL590842.1	EMBL	gene	60338	61555	.	-	.	ID=gene51;Name=dfp;gbkey=Gene;gene=dfp;gene_biotype=protein_coding;locus_tag=YPO0048
AL590842.1	EMBL	CDS	60338	61555	.	-	0	ID=cds47;Parent=gene51;Dbxref=GOA:Q74YA6,InterPro:IPR003382,InterPro:IPR005252,InterPro:IPR007085,UniProtKB/TrEMBL:Q74YA6,NCBI_GP:CAL18738.1;Name=CAL18738.1;Note=Similar to Escherichia coli DNA/pantothenate metabolism flavoprotein Dfp SW:DFP_ECOLI (P24285) (430 aa) fasta scores: E(): 0%2C 75.2%25 id in 407 aa%2C and to Vibrio cholerae DNA/pantothenate metabolism flavoprotein VC0215 TR:Q9KVD1 (EMBL:AE004111) (399 aa) fasta scores: E(): 0%2C66.2%25 id in 396 aa;gbkey=CDS;gene=dfp;inference=similar to sequence:INSDC:AE004111;product=DNA/pantothenate metabolism flavoprotein;protein_id=CAL18738.1;transl_table=11
AL590842.1	EMBL	sequence_feature	60728	60760	.	-	.	ID=id141;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=dfp;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	61181	61534	.	-	.	ID=id142;Note=Pfam match to entry PF02441 Flavoprotein%2C %2C score 168.70%2C E-value 9.7e-47;gbkey=misc_feature;gene=dfp;inference=protein motif:PF02441
AL590842.1	EMBL	gene	61749	62417	.	+	.	ID=gene52;Name=radC;gbkey=Gene;gene=radC;gene_biotype=protein_coding;locus_tag=YPO0049
AL590842.1	EMBL	CDS	61749	62417	.	+	0	ID=cds48;Parent=gene52;Dbxref=InterPro:IPR001405,InterPro:IPR010994,InterPro:IPR020891,InterPro:IPR022820,InterPro:IPR025657,NCBI_GP:CAL18739.1;Name=CAL18739.1;Note=Similar to Escherichia coli DNA repair protein RadC SW:RADC_ECOLI (P25531) (222 aa) fasta scores: E(): 0%2C 58.2%25 id in 213 aa;gbkey=CDS;gene=radC;product=putative DNA repair protein;protein_id=CAL18739.1;transl_table=11
AL590842.1	EMBL	sequence_feature	62259	62276	.	+	.	ID=id143;Note=PS01302 DNA repair protein radC family signature.;gbkey=misc_feature;gene=radC;inference=protein motif:ProSite:PS01302
AL590842.1	EMBL	gene	62680	62916	.	+	.	ID=gene53;Name=rpmB;gbkey=Gene;gene=rpmB;gene_biotype=protein_coding;locus_tag=YPO0050
AL590842.1	EMBL	CDS	62680	62916	.	+	0	ID=cds49;Parent=gene53;Dbxref=GOA:Q8ZJP2,InterPro:IPR001383,InterPro:IPR026569,NCBI_GP:CAL18740.1;Name=CAL18740.1;Note=Similar to Escherichia coli 50S ribosomal protein L28 RpmB SW:RL28_ECOLI (P02428) (77 aa) fasta scores: E(): 1.1e-32%2C 92.2%25 id in 77 aa;gbkey=CDS;gene=rpmB;product=50S ribosomal protein L28;protein_id=CAL18740.1;transl_table=11
AL590842.1	EMBL	sequence_feature	62686	62868	.	+	.	ID=id144;Note=Pfam match to entry PF00830 Ribosomal_L28%2C Ribosomal L28 family%2C score 132.40%2C E-value 8.1e-36;gbkey=misc_feature;gene=rpmB;inference=protein motif:PF00830
AL590842.1	EMBL	gene	62928	63095	.	+	.	ID=gene54;Name=rpmG;gbkey=Gene;gene=rpmG;gene_biotype=protein_coding;locus_tag=YPO0051
AL590842.1	EMBL	CDS	62928	63095	.	+	0	ID=cds50;Parent=gene54;Dbxref=GOA:Q8ZJP1,InterPro:IPR001705,InterPro:IPR011332,InterPro:IPR018264,NCBI_GP:CAL18741.1;Name=CAL18741.1;Note=Similar to Escherichia coli and Salmonella typhimurium 50S ribosomal protein L33 SW:RL33_ECOLI (P02436) (54 aa) fasta scores: E(): 1.7e-21%2C 96.3%25 id in 54 aa;gbkey=CDS;gene=rpmG;product=50S ribosomal protein L33;protein_id=CAL18741.1;transl_table=11
AL590842.1	EMBL	sequence_feature	62943	63086	.	+	.	ID=id145;Note=Pfam match to entry PF00471 Ribosomal_L33%2C Ribosomal protein L33%2C score 91.30%2C E-value 2e-23;gbkey=misc_feature;gene=rpmG;inference=protein motif:PF00471
AL590842.1	EMBL	sequence_feature	62988	63047	.	+	.	ID=id146;Note=PS00582 Ribosomal protein L33 signature.;gbkey=misc_feature;gene=rpmG;inference=protein motif:ProSite:PS00582
AL590842.1	EMBL	gene	63178	63987	.	+	.	ID=gene55;Name=fpg;gbkey=Gene;gene=fpg;gene_biotype=protein_coding;gene_synonym=mutM;locus_tag=YPO0052
AL590842.1	EMBL	CDS	63178	63987	.	+	0	ID=cds51;Parent=gene55;Dbxref=GOA:Q8ZJP0,InterPro:IPR000191,InterPro:IPR000214,InterPro:IPR010663,InterPro:IPR010979,InterPro:IPR012319,InterPro:IPR015886,InterPro:IPR015887,InterPro:IPR020629,NCBI_GP:CAL18742.1;Name=CAL18742.1;Note=Similar to Escherichia coli formamidopyrimidine-DNA glycosylase involved in DNA-damage repair%2C MutM SW:FPG_ECOLI (P05523) (269 aa) fasta scores: E(): 0%2C 79.5%25 id in 268 aa;gbkey=CDS;gene=fpg;product=formamidopyrimidine-DNA glycosylase;protein_id=CAL18742.1;transl_table=11
AL590842.1	EMBL	sequence_feature	63181	63981	.	+	.	ID=id147;Note=Pfam match to entry PF01149 Fapy_DNA_glyco%2CFormamidopyrimidine-DNA glycosylase%2C score 473.90%2C E-value 1.3e-138;gbkey=misc_feature;gene=fpg;inference=protein motif:PF01149
AL590842.1	EMBL	gene	63993	64472	.	-	.	ID=gene56;Name=coaD;gbkey=Gene;gene=coaD;gene_biotype=protein_coding;gene_synonym=kdtB;locus_tag=YPO0053
AL590842.1	EMBL	CDS	63993	64472	.	-	0	ID=cds52;Parent=gene56;Dbxref=GOA:Q8ZJN9,InterPro:IPR001980,InterPro:IPR004821,InterPro:IPR014729,PDB:3L92,PDB:3L93,NCBI_GP:CAL18743.1;Name=CAL18743.1;Note=Similar to Serratia marcescens phosphopantetheine adenylyltransferase CoaD SW:COAD_SERMA (Q9X980) (161 aa) fasta scores: E(): 0%2C 82.4%25 id in 159 aa%2C and to Escherichia coli phosphopantetheine adenylyltransferase KdtB SW:COAD_ECOLI (P23875) (159 aa) fasta scores: E(): 0%2C73.6%25 id in 159 aa;gbkey=CDS;gene=coaD;product=phosphopantetheine adenylyltransferase;protein_id=CAL18743.1;transl_table=11
AL590842.1	EMBL	sequence_feature	64059	64457	.	-	.	ID=id148;Note=Pfam match to entry PF01467 Cytidylyltransf%2CCytidylyltransferase%2C score 158.30%2C E-value 1.4e-43;gbkey=misc_feature;gene=coaD;inference=protein motif:PF01467
AL590842.1	EMBL	gene	64469	65251	.	-	.	ID=gene57;Name=kdtX;gbkey=Gene;gene=kdtX;gene_biotype=protein_coding;gene_synonym=waaE;locus_tag=YPO0054
AL590842.1	EMBL	CDS	64469	65251	.	-	0	ID=cds53;Parent=gene57;Dbxref=GOA:Q7CLB6,InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:Q7CLB6,NCBI_GP:CAL18744.1;Name=CAL18744.1;Note=Similar to Serratia marcescens lipopolysaccharide core biosynthesis glycosyl transferase KdtX SW:KDTX_SERMA (Q54435) (257 aa) fasta scores: E(): 0%2C 76.1%25 id in 259 aa and to Klebsiella pneumoniae lipopolysaccharide core biosynthesis glycosyl transferase WaaE SW:WAAE_KLEPN (Q9XC90) (258 aa) fasta scores: E(): 0%2C 70.6%25 id in 255 aa;gbkey=CDS;gene=kdtX;product=lipopolysaccharide core biosynthesis glycosyl transferase;protein_id=CAL18744.1;transl_table=11
AL590842.1	EMBL	sequence_feature	64748	65230	.	-	.	ID=id149;Note=Pfam match to entry PF00535 Glycos_transf_2%2CGlycosyl transferases%2C score 71.00%2C E-value 2.6e-17;gbkey=misc_feature;gene=kdtX;inference=protein motif:PF00535
AL590842.1	EMBL	gene	65252	66529	.	-	.	ID=gene58;Name=kdtA;gbkey=Gene;gene=kdtA;gene_biotype=protein_coding;gene_synonym=waaA;locus_tag=YPO0055
AL590842.1	EMBL	CDS	65252	66529	.	-	0	ID=cds54;Parent=gene58;Dbxref=GOA:Q0WKN7,InterPro:IPR001296,InterPro:IPR007507,UniProtKB/TrEMBL:Q0WKN7,NCBI_GP:CAL18745.1;Name=CAL18745.1;Note=Similar to Escherichia coli 3-deoxy-D-manno-octulosonic-acid transferase KdtA SW:KDTA_ECOLI (P23282) (425 aa) fasta scores: E(): 0%2C 79.8%25 id in 425 aa and to Serratia marcescens KdtA TR:Q54434 (EMBL:U52844) (425 aa) fasta scores: E(): 0%2C 88.5%25 id in 425 aa;gbkey=CDS;gene=kdtA;inference=similar to sequence:INSDC:U52844;product=3-deoxy-D-manno-octulosonic-acid transferase;protein_id=CAL18745.1;transl_table=11
AL590842.1	EMBL	sequence_feature	65327	65605	.	-	.	ID=id150;Note=Pfam match to entry PF00534 Glycos_transf_1%2CGlycosyl transferases group 1%2C score 25.70%2C E-value 6.9e-06;gbkey=misc_feature;gene=kdtA;inference=protein motif:PF00534
AL590842.1	EMBL	sequence_feature	66335	66400	.	-	.	ID=id151;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=kdtA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	66461	66526	.	-	.	ID=id152;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=kdtA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	66949	67914	.	-	.	ID=gene59;Name=rfa-2;gbkey=Gene;gene=rfa-2;gene_biotype=protein_coding;gene_synonym=rfaC,waaC;locus_tag=YPO0056
AL590842.1	EMBL	CDS	66949	67914	.	-	0	ID=cds55;Parent=gene59;Dbxref=GOA:Q0WKN6,InterPro:IPR002201,InterPro:IPR011908,UniProtKB/TrEMBL:Q0WKN6,NCBI_GP:CAL18746.1;Name=CAL18746.1;Note=Similar to Escherichia coli lipopolysaccharide core biosynthesis heptosyltransferase-1 RfaC SW:RFAC_ECOLI (P24173) (319 aa) fasta scores: E(): 0%2C 68.3%25 id in 319 aa;gbkey=CDS;gene=rfa-2;product=lipopolysaccharide heptosyltransferase-1;protein_id=CAL18746.1;transl_table=11
AL590842.1	EMBL	sequence_feature	66964	67692	.	-	.	ID=id153;Note=Pfam match to entry PF01075 Heptosyltranf%2CHeptosyltransferase%2C score 312.00%2C E-value 7.1e-90;gbkey=misc_feature;gene=rfa-2;inference=protein motif:PF01075
AL590842.1	EMBL	gene	67914	68978	.	-	.	ID=gene60;Name=rfaF;gbkey=Gene;gene=rfaF;gene_biotype=protein_coding;gene_synonym=waaF;locus_tag=YPO0057
AL590842.1	EMBL	CDS	67914	68978	.	-	0	ID=cds56;Parent=gene60;Dbxref=GOA:Q0WKN5,InterPro:IPR002201,InterPro:IPR011910,UniProtKB/TrEMBL:Q0WKN5,NCBI_GP:CAL18747.1;Name=CAL18747.1;Note=Similar to Escherichia coli ADP-heptose--LPS heptosyltransferase II RfaF%2C involved in LPS core biosynthesis%2C SW:RFAF_ECOLI (P37692) (348 aa) fasta scores: E(): 0%2C 73.8%25 id in 347 aa;gbkey=CDS;gene=rfaF;product=ADP-heptose--LPS heptosyltransferase II;protein_id=CAL18747.1;transl_table=11
AL590842.1	EMBL	sequence_feature	68007	68774	.	-	.	ID=id154;Note=Pfam match to entry PF01075 Heptosyltranf%2CHeptosyltransferase%2C score 371.70%2C E-value 7.4e-108;gbkey=misc_feature;gene=rfaF;inference=protein motif:PF01075
AL590842.1	EMBL	gene	69009	69941	.	-	.	ID=gene61;Name=htrM;gbkey=Gene;gene=htrM;gene_biotype=protein_coding;gene_synonym=rfaD;locus_tag=YPO0058
AL590842.1	EMBL	CDS	69009	69941	.	-	0	ID=cds57;Parent=gene61;Dbxref=GOA:Q8ZJN4,InterPro:IPR001509,InterPro:IPR011912,InterPro:IPR016040,NCBI_GP:CAL18748.1;Name=CAL18748.1;Note=Similar to Escherichia coli ADP-L-glycero-D-manno-heptose-6-epimerase RfaD%2C involved in lipopolysaccharide biosynthesis SW:RFAD_ECOLI (P17963) (310 aa) fasta scores: E(): 0%2C 83.1%25 id in 308 aa;gbkey=CDS;gene=htrM;product=ADP-L-glycero-D-manno-heptose-6-epimerase;protein_id=CAL18748.1;transl_table=11
AL590842.1	EMBL	sequence_feature	69012	69938	.	-	.	ID=id155;Note=Pfam match to entry PF01370 Epimerase%2C NAD dependent epimerase/dehydratase family%2C score 13.20%2C E-value 4.9e-13;gbkey=misc_feature;gene=htrM;inference=protein motif:PF01370
AL590842.1	EMBL	gene	70187	71398	.	+	.	ID=gene62;Name=kbl;gbkey=Gene;gene=kbl;gene_biotype=protein_coding;locus_tag=YPO0059
AL590842.1	EMBL	CDS	70187	71398	.	+	0	ID=cds58;Parent=gene62;Dbxref=GOA:Q0WKN3,InterPro:IPR001917,InterPro:IPR004839,InterPro:IPR011282,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q0WKN3,NCBI_GP:CAL18749.1;Name=CAL18749.1;Note=Similar to Escherichia coli 2-amino-3-ketobutyrate coenzyme A ligase Kbl SW:KBL_ECOLI (P07912) (398 aa) fasta scores: E(): 0%2C 84.8%25 id in 394 aa;gbkey=CDS;gene=kbl;product=2-amino-3-ketobutyrate coenzyme A ligase;protein_id=CAL18749.1;transl_table=11
AL590842.1	EMBL	sequence_feature	70451	71305	.	+	.	ID=id156;Note=Pfam match to entry PF00222 aminotran_2%2CAminotransferases class-II%2C score 427.90%2C E-value 8.9e-125;gbkey=misc_feature;gene=kbl;inference=protein motif:PF00222
AL590842.1	EMBL	sequence_feature	70922	70951	.	+	.	ID=id157;Note=PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site.;gbkey=misc_feature;gene=kbl;inference=protein motif:ProSite:PS00599
AL590842.1	EMBL	gene	71408	72433	.	+	.	ID=gene63;Name=tdh;gbkey=Gene;gene=tdh;gene_biotype=protein_coding;locus_tag=YPO0060
AL590842.1	EMBL	CDS	71408	72433	.	+	0	ID=cds59;Parent=gene63;Dbxref=GOA:Q8ZJN2,InterPro:IPR002085,InterPro:IPR002328,InterPro:IPR004627,InterPro:IPR011032,InterPro:IPR013149,InterPro:IPR013154,InterPro:IPR016040,NCBI_GP:CAL18750.1;Name=CAL18750.1;Note=Similar to Escherichia coli threonine 3-dehydrogenase Tdh SW:TDH_ECOLI (P07913) (341 aa) fasta scores: E(): 0%2C 92.1%25 id in 341 aa;gbkey=CDS;gene=tdh;product=threonine 3-dehydrogenase;protein_id=CAL18750.1;transl_table=11
AL590842.1	EMBL	sequence_feature	71441	72427	.	+	.	ID=id158;Note=Pfam match to entry PF00107 adh_zinc%2C Zinc-binding dehydrogenases%2C score 370.40%2C E-value 1.8e-107;gbkey=misc_feature;gene=tdh;inference=protein motif:PF00107
AL590842.1	EMBL	sequence_feature	71591	71635	.	+	.	ID=id159;Note=PS00059 Zinc-containing alcohol dehydrogenases signature.;gbkey=misc_feature;gene=tdh;inference=protein motif:ProSite:PS00059
AL590842.1	EMBL	pseudogene	72571	73370	.	-	.	ID=gene64;Name=YPO0061;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO0061;pseudo=true
AL590842.1	EMBL	CDS	72571	73370	.	-	0	ID=cds60;Parent=gene64;Note=Similar to Escherichia coli hypothetical 30.7 kDa protein YibQ SW:YIBQ_ECOLI (P37691) (277 aa) fasta scores: E(): 4.2e-22%2C 58.5%25 id in 265 aa. Is likely to have undergone a deletion event which has also lead to a shift in reading frame (after aa 97).;gbkey=CDS;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	73529	74881	.	-	.	ID=gene65;Name=YPO0063;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0063
AL590842.1	EMBL	CDS	73529	74881	.	-	0	ID=cds61;Parent=gene65;Dbxref=InterPro:IPR011055,InterPro:IPR016047,UniProtKB/TrEMBL:Q0WKN1,NCBI_GP:CAL18752.1;Name=CAL18752.1;Note=Similar to many proteins of unknown function e.g. Escherichia coli hypothetical 46.6 kDa protein in secB-tdh intergenic region%2C YibP SW:YIBP_ECOLI (P37690) (419 aa) fasta scores: E(): 0%2C 63.2%25 id in 418 aa;gbkey=CDS;product=putative membrane protein;protein_id=CAL18752.1;transl_table=11
AL590842.1	EMBL	sequence_feature	73541	73789	.	-	.	ID=id160;Note=Pfam match to entry PF01551 Peptidase_M37%2C Peptidase family M23/M37%2C score 120.60%2C E-value 2.8e-32;gbkey=misc_feature;inference=protein motif:PF01551
AL590842.1	EMBL	gene	74909	76456	.	-	.	ID=gene66;Name=YPO0064;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0064
AL590842.1	EMBL	CDS	74909	76456	.	-	0	ID=cds62;Parent=gene66;Dbxref=GOA:Q8ZJN0,InterPro:IPR005995,InterPro:IPR006124,InterPro:IPR011258,InterPro:IPR017849,InterPro:IPR017850,NCBI_GP:CAL18753.1;Name=CAL18753.1;Note=Similar to Escherichia coli 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase YibO SW:PMGI_ECOLI (P37689) (514 aa) fasta scores: E(): 0%2C83.3%25 id in 515 aa;gbkey=CDS;product=2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase;protein_id=CAL18753.1;transl_table=11
AL590842.1	EMBL	sequence_feature	74987	75337	.	-	.	ID=id161;Note=Pfam match to entry PF01676 Metalloenzyme%2CMetalloenzyme superfamily%2C score 185.20%2C E-value 1e-51;gbkey=misc_feature;inference=protein motif:PF01676
AL590842.1	EMBL	gene	76853	77287	.	+	.	ID=gene67;Name=YPO0065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0065
AL590842.1	EMBL	CDS	76853	77287	.	+	0	ID=cds63;Parent=gene67;Dbxref=InterPro:IPR001763,UniProtKB/TrEMBL:Q7CLB7,NCBI_GP:CAL18754.1;Name=CAL18754.1;Note=Similar to Escherichia coli hypothetical protein YibN SW:YIBN_ECOLI (P37688) (143 aa) fasta scores: E(): 0%2C65.7%25 id in 143 aa;gbkey=CDS;product=putative membrane protein;protein_id=CAL18754.1;transl_table=11
AL590842.1	EMBL	sequence_feature	76889	76945	.	+	.	ID=id162;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	76976	77260	.	+	.	ID=id163;Note=Pfam match to entry PF00581 Rhodanese%2CRhodanese-like domain%2C score 76.30%2C E-value 6.4e-19;gbkey=misc_feature;inference=protein motif:PF00581
AL590842.1	EMBL	gene	77406	77654	.	+	.	ID=gene68;Name=grxC;gbkey=Gene;gene=grxC;gene_biotype=protein_coding;locus_tag=YPO0066
AL590842.1	EMBL	CDS	77406	77654	.	+	0	ID=cds64;Parent=gene68;Dbxref=GOA:Q7CLB8,InterPro:IPR002109,InterPro:IPR011767,InterPro:IPR011900,InterPro:IPR012336,InterPro:IPR014025,UniProtKB/TrEMBL:Q7CLB8,NCBI_GP:CAL18755.1;Name=CAL18755.1;Note=Similar to Escherichia coli glutaredoxin 3 GrxC SW:GLR3_ECOLI (P37687) (82 aa) fasta scores: E(): 1.9e-27%2C77.8%25 id in 81 aa;gbkey=CDS;gene=grxC;product=glutaredoxin;protein_id=CAL18755.1;transl_table=11
AL590842.1	EMBL	sequence_feature	77412	77585	.	+	.	ID=id164;Note=Pfam match to entry PF00462 glutaredoxin%2CGlutaredoxin%2C score 79.20%2C E-value 8.4e-20;gbkey=misc_feature;gene=grxC;inference=protein motif:PF00462
AL590842.1	EMBL	gene	77742	78218	.	+	.	ID=gene69;Name=secB;gbkey=Gene;gene=secB;gene_biotype=protein_coding;locus_tag=YPO0067
AL590842.1	EMBL	CDS	77742	78218	.	+	0	ID=cds65;Parent=gene69;Dbxref=GOA:Q8ZJM7,InterPro:IPR003708,NCBI_GP:CAL18756.1;Name=CAL18756.1;Note=Similar to Escherichia coli protein-export protein SecB SW:SECB_ECOLI (P15040) (155 aa) fasta scores: E(): 0%2C91.8%25 id in 158 aa;gbkey=CDS;gene=secB;product=protein-export protein;protein_id=CAL18756.1;transl_table=11
AL590842.1	EMBL	gene	78218	79237	.	+	.	ID=gene70;Name=gpsA;gbkey=Gene;gene=gpsA;gene_biotype=protein_coding;locus_tag=YPO0068
AL590842.1	EMBL	CDS	78218	79237	.	+	0	ID=cds66;Parent=gene70;Dbxref=GOA:Q8ZJM6,InterPro:IPR006109,InterPro:IPR006168,InterPro:IPR008927,InterPro:IPR011128,InterPro:IPR013328,InterPro:IPR016040,NCBI_GP:CAL18757.1;Name=CAL18757.1;Note=Similar to Escherichia coli glycerol-3-phosphate dehydrogenase [NAD+] GpsA SW:GPDA_ECOLI (P37606) (339 aa) fasta scores: E(): 0%2C 84.5%25 id in 336 aa;gbkey=CDS;gene=gpsA;product=glycerol-3-phosphate dehydrogenase;protein_id=CAL18757.1;transl_table=11
AL590842.1	EMBL	sequence_feature	78230	79198	.	+	.	ID=id165;Note=Pfam match to entry PF01210 NAD_Gly3P_dh%2CNAD-dependent glycerol-3-phosphate dehydrogenase%2C score 553.10%2C E-value 1.9e-162;gbkey=misc_feature;gene=gpsA;inference=protein motif:PF01210
AL590842.1	EMBL	sequence_feature	78791	78856	.	+	.	ID=id166;Note=PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature.;gbkey=misc_feature;gene=gpsA;inference=protein motif:ProSite:PS00957
AL590842.1	EMBL	gene	79297	79437	.	+	.	ID=gene71;Name=YPO0069;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0069
AL590842.1	EMBL	CDS	79297	79437	.	+	0	ID=cds67;Parent=gene71;Dbxref=UniProtKB/TrEMBL:Q74Y95,NCBI_GP:CAL18758.1;Name=CAL18758.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL18758.1;transl_table=11
AL590842.1	EMBL	gene	79503	80324	.	+	.	ID=gene72;Name=cysE;gbkey=Gene;gene=cysE;gene_biotype=protein_coding;locus_tag=YPO0070
AL590842.1	EMBL	CDS	79503	80324	.	+	0	ID=cds68;Parent=gene72;Dbxref=GOA:Q0WKM4,InterPro:IPR001451,InterPro:IPR005881,InterPro:IPR010493,InterPro:IPR011004,InterPro:IPR018357,PDB:3GVD,UniProtKB/TrEMBL:Q0WKM4,NCBI_GP:CAL18759.1;Name=CAL18759.1;Note=Similar to Escherichia coli serine acetyltransferase CysE involved in cysteine biosynthesis SW:CYSE_ECOLI (P05796) (273 aa) fasta scores: E(): 0%2C 86.1%25 id in 273 aa;gbkey=CDS;gene=cysE;product=serine acetyltransferase;protein_id=CAL18759.1;transl_table=11
AL590842.1	EMBL	sequence_feature	79905	79958	.	+	.	ID=id167;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 4.50%2C E-value 1.9e+02;gbkey=misc_feature;gene=cysE;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	80001	80054	.	+	.	ID=id168;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 10.40%2CE-value 30;gbkey=misc_feature;gene=cysE;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	80079	80132	.	+	.	ID=id169;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 9.40%2C E-value 41;gbkey=misc_feature;gene=cysE;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	80106	80192	.	+	.	ID=id170;Note=PS00101 Hexapeptide-repeat containing-transferases signature.;gbkey=misc_feature;gene=cysE;inference=protein motif:ProSite:PS00101
AL590842.1	EMBL	sequence_feature	80133	80186	.	+	.	ID=id171;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 11.90%2CE-value 16;gbkey=misc_feature;gene=cysE;inference=protein motif:PF00132
AL590842.1	EMBL	gene	80447	80935	.	-	.	ID=gene73;Name=YPO0071;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0071
AL590842.1	EMBL	CDS	80447	80935	.	-	0	ID=cds69;Parent=gene73;Dbxref=GOA:Q74Y93,InterPro:IPR001537,InterPro:IPR016914,InterPro:IPR029026,InterPro:IPR029028,PDB:3N4J,PDB:3N4K,NCBI_GP:CAL18760.1;Name=CAL18760.1;Note=Similar to Escherichia coli hypothetical tRNA/rRNA methyltransferase YibK SW:YIBK_ECOLI (P33899) (157 aa) fasta scores: E(): 0%2C 80.2%25 id in 162 aa and to Neisseria meningitidis RNA methyltransferase NMB0268 TR:Q9K199 (EMBL:AE002383) (154 aa) fasta scores: E(): 0%2C 61.0%25 id in 159 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE002383;product=putative methyltransferase;protein_id=CAL18760.1;transl_table=11
AL590842.1	EMBL	sequence_feature	80495	80935	.	-	.	ID=id172;Note=Pfam match to entry PF00588 SpoU_methylase%2C SpoU rRNA Methylase family%2C score 182.80%2C E-value 5.7e-51;gbkey=misc_feature;inference=protein motif:PF00588
AL590842.1	EMBL	gene	81124	82188	.	+	.	ID=gene74;Name=YPO0072;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0072
AL590842.1	EMBL	CDS	81124	82188	.	+	0	ID=cds70;Parent=gene74;Dbxref=GOA:Q7CLC0,InterPro:IPR001497,InterPro:IPR004026,InterPro:IPR008332,InterPro:IPR009057,InterPro:IPR011991,InterPro:IPR014048,InterPro:IPR016221,InterPro:IPR018060,UniProtKB/TrEMBL:Q7CLC0,NCBI_GP:CAL18761.1;Name=CAL18761.1;Note=Similar to Escherichia coli Ada regulatory protein of the adaptive response%2C involved in DNA repair and global regulation SW:ADA_ECOLI (P06134) (354 aa) fasta scores: E(): 0%2C 52.8%25 id in 345 aa;gbkey=CDS;product=bifunctional regulatory protein/DNA repair protein;protein_id=CAL18761.1;transl_table=11
AL590842.1	EMBL	sequence_feature	81367	81498	.	+	.	ID=id173;Note=PS00041 Bacterial regulatory proteins%2C araC family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00041
AL590842.1	EMBL	sequence_feature	81409	81666	.	+	.	ID=id174;Note=Pfam match to entry PF00165 HTH_AraC%2C Bacterial regulatory helix-turn-helix proteins%2C araC family%2C score 76.50%2C E-value 5.3e-19;gbkey=misc_feature;inference=protein motif:PF00165
AL590842.1	EMBL	sequence_feature	81412	81477	.	+	.	ID=id175;Note=Predicted helix-turn-helix motif with score 1162 (+3.14 SD) at aa 97-118%2C sequence PKLNELAAQLGLSTFYFHRLFK;gbkey=misc_feature
AL590842.1	EMBL	sequence_feature	81841	82173	.	+	.	ID=id176;Note=Pfam match to entry PF01035 Methyltransf_1%2C6-O-methylguanine DNA methyltransferase%2C score 179.70%2CE-value 4.7e-50;gbkey=misc_feature;inference=protein motif:PF01035
AL590842.1	EMBL	sequence_feature	82069	82089	.	+	.	ID=id177;Note=PS00374 Methylated-DNA--protein-cysteine methyltransferase active site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00374
AL590842.1	EMBL	gene	82237	83613	.	-	.	ID=gene75;Name=cpxA;gbkey=Gene;gene=cpxA;gene_biotype=protein_coding;locus_tag=YPO0073
AL590842.1	EMBL	CDS	82237	83613	.	-	0	ID=cds71;Parent=gene75;Dbxref=GOA:Q7CLC1,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,UniProtKB/TrEMBL:Q7CLC1,NCBI_GP:CAL18762.1;Name=CAL18762.1;Note=Similar to Escherichia coli two component sensor kinase%2C CpxA SW:CPXA_ECOLI (P08336) (457 aa) fasta scores: E(): 0%2C 80.8%25 id in 454 aa;gbkey=CDS;gene=cpxA;inference=protein motif:TMHMM:2.0;product=two component sensor kinase;protein_id=CAL18762.1;transl_table=11
AL590842.1	EMBL	sequence_feature	82258	82872	.	-	.	ID=id178;Note=Pfam match to entry PF00512 signal%2C Histidine kinase%2C score 242.80%2C E-value 4.8e-69;gbkey=misc_feature;gene=cpxA;inference=protein motif:PF00512
AL590842.1	EMBL	sequence_feature	82912	83124	.	-	.	ID=id179;Note=Pfam match to entry PF00672 DUF5%2C HAMP domain%2C score 58.70%2C E-value 1.3e-13;gbkey=misc_feature;gene=cpxA;inference=protein motif:PF00672
AL590842.1	EMBL	sequence_feature	83053	83118	.	-	.	ID=id180;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=cpxA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	83533	83598	.	-	.	ID=id181;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=cpxA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	83610	84308	.	-	.	ID=gene76;Name=cpxR;gbkey=Gene;gene=cpxR;gene_biotype=protein_coding;locus_tag=YPO0074
AL590842.1	EMBL	CDS	83610	84308	.	-	0	ID=cds72;Parent=gene76;Dbxref=GOA:Q0WKM0,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,UniProtKB/TrEMBL:Q0WKM0,NCBI_GP:CAL18763.1;Name=CAL18763.1;Note=Similar to Escherichia coli two component system response regulatory protein CpxR SW:CPXR_ECOLI (P16244) (232 aa) fasta scores: E(): 0%2C 89.7%25 id in 232 aa;gbkey=CDS;gene=cpxR;product=two component system response regulatory protein;protein_id=CAL18763.1;transl_table=11
AL590842.1	EMBL	sequence_feature	83634	83852	.	-	.	ID=id182;Note=Pfam match to entry PF00486 trans_reg_C%2CTranscriptional regulatory protein%2C C terminal%2C score 112.90%2C E-value 1.8e-32;gbkey=misc_feature;gene=cpxR;inference=protein motif:PF00486
AL590842.1	EMBL	sequence_feature	83976	84305	.	-	.	ID=id183;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 150.30%2C E-value 3.4e-41;gbkey=misc_feature;gene=cpxR;inference=protein motif:PF00072
AL590842.1	EMBL	gene	84482	84970	.	+	.	ID=gene77;Name=cpxP;gbkey=Gene;gene=cpxP;gene_biotype=protein_coding;locus_tag=YPO0075
AL590842.1	EMBL	CDS	84482	84970	.	+	0	ID=cds73;Parent=gene77;Dbxref=GOA:Q7CLC2,InterPro:IPR012899,UniProtKB/TrEMBL:Q7CLC2,NCBI_GP:CAL18764.1;Name=CAL18764.1;Note=Similar to Escherichia coli periplasmic protein CpxP precursor involved in detoxification of extracytoplasmic proteins: SW:CPXP_ECOLI (P32158) (166 aa) fasta scores: E(): 6.8e-23%2C 52.5%25 id in 162 aa;gbkey=CDS;gene=cpxP;product=putative exported protein;protein_id=CAL18764.1;transl_table=11
AL590842.1	EMBL	gene	85648	86607	.	+	.	ID=gene78;Name=YPO0076;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0076
AL590842.1	EMBL	CDS	85648	86607	.	+	0	ID=cds74;Parent=gene78;Dbxref=InterPro:IPR006842,InterPro:IPR010106,UniProtKB/TrEMBL:Q7CLC3,NCBI_GP:CAL18765.1;Name=CAL18765.1;Note=Similar to Salmonella typhimurium hypothetical protein SW:YTL2_SALTY (P37415) (313 aa) fasta scores: E(): 0%2C 62.3%25 id in 308 aa and to Yersinia pestis putative transposase Y1072%2C located on plasmid pMT1%2C TR:O68786 (EMBL:AF074611) (328 aa) fasta scores: E(): 0%2C 59.0%25 id in 312 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF074611;product=conserved hypothetical protein;protein_id=CAL18765.1;transl_table=11
AL590842.1	EMBL	gene	87169	88071	.	+	.	ID=gene79;Name=YPO0077;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0077
AL590842.1	EMBL	CDS	87169	88071	.	+	0	ID=cds75;Parent=gene79;Dbxref=GOA:Q8ZJL7,InterPro:IPR002524,InterPro:IPR023783,InterPro:IPR027469,InterPro:IPR027470,NCBI_GP:CAL18766.1;Name=CAL18766.1;Note=Similar to several proteins of undefined function e.g. Vibrio cholerae hypothetical protein Vc2690 TR:Q9KNP1 (EMBL:AE004334) (302 aa) fasta scores: E(): 0%2C 62.1%25 id in 290 aa. Also similar to several putative efflux proteins e.g. Bacillus halodurans cation efflux system BH1238 TR:Q9KDH5 (EMBL:AP001511) (300 aa) fasta scores: E(): 7.5e-17%2C 27.4%25 id in 296 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001511;product=putative integral membrane protein;protein_id=CAL18766.1;transl_table=11
AL590842.1	EMBL	sequence_feature	87202	87270	.	+	.	ID=id184;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	87280	87348	.	+	.	ID=id185;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	87364	88035	.	+	.	ID=id186;Note=Pfam match to entry PF01545 Cation_efflux%2C Cation efflux family%2C score 254.70%2C E-value 1.3e-72;gbkey=misc_feature;inference=protein motif:PF01545
AL590842.1	EMBL	sequence_feature	87406	87474	.	+	.	ID=id187;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	87517	87585	.	+	.	ID=id188;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	87640	87693	.	+	.	ID=id189;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	87706	87765	.	+	.	ID=id190;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	88289	89272	.	+	.	ID=gene80;Name=pfkA;gbkey=Gene;gene=pfkA;gene_biotype=protein_coding;locus_tag=YPO0078
AL590842.1	EMBL	CDS	88289	89272	.	+	0	ID=cds76;Parent=gene80;Dbxref=GOA:Q8ZJL6,InterPro:IPR000023,InterPro:IPR012003,InterPro:IPR012828,InterPro:IPR015912,InterPro:IPR022953,NCBI_GP:CAL18767.1;Name=CAL18767.1;Note=Similar to Escherichia coli 6-phosphofructokinase isozyme I PfkA SW:K6P1_ECOLI (P06998) (320 aa) fasta scores: E(): 0%2C 75.2%25 id in 327 aa;gbkey=CDS;gene=pfkA;product=6-phosphofructokinase;protein_id=CAL18767.1;transl_table=11
AL590842.1	EMBL	sequence_feature	88295	89125	.	+	.	ID=id191;Note=Pfam match to entry PF00365 PFK%2CPhosphofructokinase%2C score 606.70%2C E-value 7.4e-222;gbkey=misc_feature;gene=pfkA;inference=protein motif:PF00365
AL590842.1	EMBL	sequence_feature	89021	89077	.	+	.	ID=id192;Note=PS00433 Phosphofructokinase signature.;gbkey=misc_feature;gene=pfkA;inference=protein motif:ProSite:PS00433
AL590842.1	EMBL	gene	89493	90482	.	+	.	ID=gene81;Name=sbp1;gbkey=Gene;gene=sbp1;gene_biotype=protein_coding;locus_tag=YPO0079
AL590842.1	EMBL	CDS	89493	90482	.	+	0	ID=cds77;Parent=gene81;Dbxref=GOA:Q0WKL5,InterPro:IPR000957,InterPro:IPR005669,UniProtKB/TrEMBL:Q0WKL5,NCBI_GP:CAL18768.1;Name=CAL18768.1;Note=Similar to Escherichia coli sulfate-binding protein precursor Sbp involved in sulphate transport: SW:SUBI_ECOLI (P06997) (329 aa) fasta scores: E(): 0%2C 83.3%25 id in 329 aa;gbkey=CDS;gene=sbp1;product=exported sulfate-binding protein;protein_id=CAL18768.1;transl_table=11
AL590842.1	EMBL	sequence_feature	89493	90479	.	+	.	ID=id193;Note=Pfam match to entry PF01100 Sulphate_bind%2CProkaryotic sulphate- and thiosulphate-binding protein%2Cscore 756.90%2C E-value 8.6e-224;gbkey=misc_feature;gene=sbp1;inference=protein motif:PF01100
AL590842.1	EMBL	sequence_feature	89925	89951	.	+	.	ID=id194;Note=PS00757 Prokaryotic sulfate-binding proteins signature 2.;gbkey=misc_feature;gene=sbp1;inference=protein motif:ProSite:PS00757
AL590842.1	EMBL	gene	90732	91550	.	-	.	ID=gene82;Name=YPO0080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0080
AL590842.1	EMBL	CDS	90732	91550	.	-	0	ID=cds78;Parent=gene82;Dbxref=UniProtKB/TrEMBL:Q74Y83,NCBI_GP:CAL18769.1;Name=CAL18769.1;Note=Weakly similar to Bacillus subtilis hypothetical protein YvgL TR:O32208 (EMBL:Z99121) (260 aa) fasta scores: E(): 4.5e-05%2C 22.6%25 id in 261 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z99121;product=hypothetical protein;protein_id=CAL18769.1;transl_table=11
AL590842.1	EMBL	gene	91626	93053	.	-	.	ID=gene83;Name=YPO0081;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0081
AL590842.1	EMBL	CDS	91626	93053	.	-	0	ID=cds79;Parent=gene83;Dbxref=GOA:Q7CLC5,InterPro:IPR001898,UniProtKB/TrEMBL:Q7CLC5,NCBI_GP:CAL18770.1;Name=CAL18770.1;Note=Similar to several including: Escherichia coli hypothetical 51.4 kDa protein YbhI SW:YBHI_ECOLI (P75763) (477 aa) fasta scores: E(): 0%2C 52.2%25 id in 477 aa%2CArabidopsis thaliana 2-oxoglutarate/malate translocator protein TR:Q9LXV3 (EMBL:AL353013) (557 aa) fasta scores: E(): 0%2C 36.1%25 id in 465 aa and Neisseria meningitidis C4-dicarboxylate transporter NMB0470 TR:Q9K0U2 (EMBL:AE002404) (488 aa) fasta scores: E(): 0%2C 35.7%25 id in 479 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL353013;product=putative membrane transport protein;protein_id=CAL18770.1;transl_table=11
AL590842.1	EMBL	sequence_feature	91632	93053	.	-	.	ID=id195;Note=Pfam match to entry PF00939 Na_sulph_symp%2CSodium:sulfate symporter transmembrane region%2C score 606.70%2C E-value 1.4e-178;gbkey=misc_feature;inference=protein motif:PF00939
AL590842.1	EMBL	sequence_feature	91653	91718	.	-	.	ID=id196;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	91782	91847	.	-	.	ID=id197;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	91908	91973	.	-	.	ID=id198;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	92034	92087	.	-	.	ID=id199;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	92118	92168	.	-	.	ID=id200;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	92190	92255	.	-	.	ID=id201;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	92358	92423	.	-	.	ID=id202;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	92463	92528	.	-	.	ID=id203;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	92766	92831	.	-	.	ID=id204;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	92853	92942	.	-	.	ID=id205;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	92988	93038	.	-	.	ID=id206;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	93119	93832	.	-	.	ID=gene84;Name=YPO0082;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0082
AL590842.1	EMBL	CDS	93119	93832	.	-	0	ID=cds80;Parent=gene84;Dbxref=GOA:Q7CLC6,InterPro:IPR005493,InterPro:IPR014165,UniProtKB/TrEMBL:Q7CLC6,NCBI_GP:CAL18771.1;Name=CAL18771.1;Note=Similar to Sphingomonas SPLB126 FldZ protein FldZ TR:Q9L3A1 (EMBL:AJ277295) (224 aa) fasta scores: E(): 0%2C61.6%25 id in 224 aa and to Pseudomonas ochraceae 4-hydroxy-4-methyl-2-oxoglutarate aldolase ProA TR:BAB21456 (EMBL:AB050935) (227 aa) fasta scores: E(): 0%2C 57.8%25 id in 223 aa. Note residue 6 offers an alternative translation initiation site;gbkey=CDS;inference=similar to sequence:INSDC:AJ277295;product=possible transferase;protein_id=CAL18771.1;transl_table=11
AL590842.1	EMBL	gene	93829	94761	.	-	.	ID=gene85;Name=YPO0083;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0083
AL590842.1	EMBL	CDS	93829	94761	.	-	0	ID=cds81;Parent=gene85;Dbxref=InterPro:IPR003737,InterPro:IPR024078,UniProtKB/TrEMBL:Q0WKL1,NCBI_GP:CAL18772.1;Name=CAL18772.1;Note=Weakly similar to several proteins e.g. Pyrococcus horikoshii hypothetical 31.6 kDa protein PH0499 TR:O58235 (EMBL:AP000002) (272 aa) fasta scores: E(): 1.8e-05%2C 25.5%25 id in 247 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP000002;product=hypothetical protein;protein_id=CAL18772.1;transl_table=11
AL590842.1	EMBL	gene	94892	95938	.	+	.	ID=gene86;Name=YPO0084;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0084
AL590842.1	EMBL	CDS	94892	95938	.	+	0	ID=cds82;Parent=gene86;Dbxref=GOA:Q0WKL0,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q0WKL0,NCBI_GP:CAL18773.1;Name=CAL18773.1;Note=Similar to several including: Sphingomonas sp LB126 protein FldY TR:Q9L3A2 (EMBL:AJ277295) (383 aa) fasta scores: E(): 3.1e-24%2C 32.1%25 id in 271 aa and to Agrobacterium radiobacter putative transcriptional regulator PcaQ TR:AAG27520 (EMBL:AF230648) (315 aa) fasta scores: E(): 2e-17%2C 27.0%25 id in 293 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ277295;product=possible transcriptional regulator;protein_id=CAL18773.1;transl_table=11
AL590842.1	EMBL	sequence_feature	95039	95467	.	+	.	ID=id207;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 107.40%2C E-value 2.7e-28;gbkey=misc_feature;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	95078	95143	.	+	.	ID=id208;Note=Predicted helix-turn-helix motif with score 1283 (+3.56 SD) at aa 63-84%2C sequence QHALHVAQALDITQSAVSAALK;gbkey=misc_feature
AL590842.1	EMBL	sequence_feature	95081	95173	.	+	.	ID=id209;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00044
AL590842.1	EMBL	gene	96170	96937	.	-	.	ID=gene87;Name=tpi;gbkey=Gene;gene=tpi;gene_biotype=protein_coding;gene_synonym=tpiA;locus_tag=YPO0085
AL590842.1	EMBL	CDS	96170	96937	.	-	0	ID=cds83;Parent=gene87;Dbxref=GOA:Q8ZJK9,InterPro:IPR000652,InterPro:IPR013785,InterPro:IPR020861,InterPro:IPR022896,NCBI_GP:CAL18774.1;Name=CAL18774.1;Note=Similar to Escherichia coli triosephosphate isomerase TpiA SW:TPIS_ECOLI (P04790) (255 aa) fasta scores: E(): 0%2C 82.4%25 id in 255 aa;gbkey=CDS;gene=tpi;product=triosephosphate isomerase;protein_id=CAL18774.1;transl_table=11
AL590842.1	EMBL	sequence_feature	96182	96934	.	-	.	ID=id210;Note=Pfam match to entry PF00121 TIM%2C Triosephosphate isomerase%2C score 518.70%2C E-value 2.9e-167;gbkey=misc_feature;gene=tpi;inference=protein motif:PF00121
AL590842.1	EMBL	sequence_feature	96413	96445	.	-	.	ID=id211;Note=PS00171 Triosephosphate isomerase active site.;gbkey=misc_feature;gene=tpi;inference=protein motif:ProSite:PS00171
AL590842.1	EMBL	gene	97066	97701	.	-	.	ID=gene88;Name=YPO0086;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0086
AL590842.1	EMBL	CDS	97066	97701	.	-	0	ID=cds84;Parent=gene88;Dbxref=InterPro:IPR009918,UniProtKB/TrEMBL:Q74Y77,NCBI_GP:CAL18775.1;Name=CAL18775.1;Note=Similar in parts to Escherichia coli hypothetical 21.8 kDa protein in YiiQ SW:YIIQ_ECOLI (P32160) (199 aa) fasta scores: E(): 0%2C 55.9%25 id in 195 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL18775.1;transl_table=11
AL590842.1	EMBL	gene	97849	98283	.	+	.	ID=gene89;Name=YPO0087;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0087
AL590842.1	EMBL	CDS	97849	98283	.	+	0	ID=cds85;Parent=gene89;Dbxref=GOA:Q0WKK7,InterPro:IPR008523,UniProtKB/TrEMBL:Q0WKK7,NCBI_GP:CAL18776.1;Name=CAL18776.1;Note=Similar to Escherichia coli hypothetical protein YiiR SW:YIIR_ECOLI (P32161) (146 aa) fasta scores: E(): 0%2C66.7%25 id in 141 aa and to Escherichia coli O157:H7 putative cytochrome YhaH TR:AAG58236 (EMBL:AE005540) (121 aa) fasta scores: E(): 0.00022%2C 30.5%25 id in 131 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE005540;product=conserved membrane protein;protein_id=CAL18776.1;transl_table=11
AL590842.1	EMBL	sequence_feature	97903	97959	.	+	.	ID=id212;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	97969	98037	.	+	.	ID=id213;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	98062	98130	.	+	.	ID=id214;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	98143	98211	.	+	.	ID=id215;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	98624	99370	.	-	.	ID=gene90;Name=fpr;gbkey=Gene;gene=fpr;gene_biotype=protein_coding;gene_synonym=mvrA;locus_tag=YPO0088
AL590842.1	EMBL	CDS	98624	99370	.	-	0	ID=cds86;Parent=gene90;Dbxref=GOA:Q7CLC7,InterPro:IPR001433,InterPro:IPR008333,InterPro:IPR017927,InterPro:IPR017938,UniProtKB/TrEMBL:Q7CLC7,NCBI_GP:CAL18777.1;Name=CAL18777.1;Note=Similar to Escherichia coli ferredoxin--NADP reductase Fpr SW:FENR_ECOLI (P28861) (247 aa) fasta scores: E(): 0%2C 74.1%25 id in 247 aa;gbkey=CDS;gene=fpr;product=ferredoxin--NADP reductase;protein_id=CAL18777.1;transl_table=11
AL590842.1	EMBL	sequence_feature	98699	99055	.	-	.	ID=id216;Note=Pfam match to entry PF00175 oxidored_fad%2COxidoreductase FAD/NAD-binding domain%2C score 87.60%2C E-value 2.5e-22;gbkey=misc_feature;gene=fpr;inference=protein motif:PF00175
AL590842.1	EMBL	pseudogene	99525	100193	.	-	.	ID=gene91;Name='glpX;gbkey=Gene;gene='glpX;gene_biotype=pseudogene;locus_tag=YPO0089;pseudo=true
AL590842.1	EMBL	CDS	99525	100193	.	-	0	ID=cds87;Parent=gene91;Note=Partial CDS which is highly similar to Escherichia coli protein GlpX%2C a protein of unknown function thought to be involved in glycerol metabolism%2C SW:GLPX_ECOLI (P28860) (336 aa) fasta scores: E(): 0%2C 81.1%25 id in 222 aa. The predicted product of this CDS lacks 114 aa from the N-terminal following a likely deletion event;gbkey=CDS;gene='glpX;product=GlpX protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	100261	101094	.	-	.	ID=id217;Note=Pfam match to entry PF00370 FGGY%2C FGGY family of carbohydrate kinases%2C score 449.90%2C E-value 2.2e-131;gbkey=misc_feature;inference=protein motif:PF00370
AL590842.1	EMBL	pseudogene	100264	101355	.	-	.	ID=gene92;Name=glpK';gbkey=Gene;gene=glpK';gene_biotype=pseudogene;locus_tag=YPO0090;pseudo=true
AL590842.1	EMBL	CDS	100264	101355	.	-	0	ID=cds88;Parent=gene92;Note=Partial CDS which is highly similar to Escherichia coli glycerol kinase GlpK SW:GLPK_ECOLI (P08859) (501 aa) fasta scores: E(): 0%2C 81.3%25 id in 380 aa. The predicted product of this CDS lacks approximately 120 aa from the C-terminal following a likely deletion event.;gbkey=CDS;gene=glpK';product=glycerol kinase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	100897	100935	.	-	.	ID=id218;Note=PS00933 FGGY family of carbohydrate kinases signature 1.;gbkey=misc_feature;gene=glpK';inference=protein motif:ProSite:PS00933
AL590842.1	EMBL	gene	101532	102380	.	-	.	ID=gene93;Name=glpF;gbkey=Gene;gene=glpF;gene_biotype=protein_coding;locus_tag=YPO0091
AL590842.1	EMBL	CDS	101532	102380	.	-	0	ID=cds89;Parent=gene93;Dbxref=GOA:Q7CLC8,InterPro:IPR000425,InterPro:IPR022357,InterPro:IPR023271,UniProtKB/TrEMBL:Q7CLC8,NCBI_GP:CAL18780.1;Name=CAL18780.1;Note=Similar to Escherichia coli glycerol uptake facilitator protein GlpF SW:GLPF_ECOLI (P11244) (281 aa) fasta scores: E(): 0%2C 82.6%25 id in 282 aa;gbkey=CDS;gene=glpF;inference=protein motif:TMHMM:2.0;product=glycerol uptake facilitator protein;protein_id=CAL18780.1;transl_table=11
AL590842.1	EMBL	sequence_feature	101610	101675	.	-	.	ID=id219;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=glpF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	101622	102380	.	-	.	ID=id220;Note=Pfam match to entry PF00230 MIP%2C Major intrinsic protein%2C score 419.10%2C E-value 7.5e-136;gbkey=misc_feature;gene=glpF;inference=protein motif:PF00230
AL590842.1	EMBL	sequence_feature	101775	101840	.	-	.	ID=id221;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=glpF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	101880	101945	.	-	.	ID=id222;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=glpF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	102048	102113	.	-	.	ID=id223;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=glpF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	102153	102179	.	-	.	ID=id224;Note=PS00221 MIP family signature.;gbkey=misc_feature;gene=glpF;inference=protein motif:ProSite:PS00221
AL590842.1	EMBL	sequence_feature	102174	102239	.	-	.	ID=id225;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=glpF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	102285	102341	.	-	.	ID=id226;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=glpF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	102390	102629	.	-	.	ID=gene94;Name=YPO0092;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0092
AL590842.1	EMBL	CDS	102390	102629	.	-	0	ID=cds90;Parent=gene94;Dbxref=UniProtKB/TrEMBL:Q74Y71,NCBI_GP:CAL18781.1;Name=CAL18781.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL18781.1;transl_table=11
AL590842.1	EMBL	gene	103008	103247	.	+	.	ID=gene95;Name=YPO0093;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0093
AL590842.1	EMBL	CDS	103008	103247	.	+	0	ID=cds91;Parent=gene95;Dbxref=GOA:Q7CLC9,InterPro:IPR009252,NCBI_GP:CAL18782.1;Name=CAL18782.1;Note=Similar to Escherichia coli hypothetical protein YiiU SW:YIIU_ECOLI (P32164) (81 aa) fasta scores: E(): 3.7e-19%2C 75.9%25 id in 79 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL18782.1;transl_table=11
AL590842.1	EMBL	repeat_region	103347	104058	.	-	.	ID=id227;Note=Contains an 'A' at nucleotide position 315.%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	103455	103913	.	-	.	ID=gene96;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO0094
AL590842.1	EMBL	CDS	103455	103913	.	-	0	ID=cds92;Parent=gene96;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL18783.1;Name=CAL18783.1;Note=Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL18783.1;transl_table=11
AL590842.1	EMBL	sequence_feature	103548	103859	.	-	.	ID=id228;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	pseudogene	107535	108365	.	-	.	ID=gene97;Name=YPO0095;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO0095;part=1/2;pseudo=true
AL590842.1	EMBL	pseudogene	104291	105577	.	-	.	ID=gene97;Name=YPO0095;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO0095;part=2/2;pseudo=true
AL590842.1	EMBL	CDS	107535	108365	.	-	0	ID=cds93;Parent=gene97;Dbxref=PSEUDO:CAL18784.1;Note=Similar to Escherichia coli colicin V secretion ATP-binding protein CvaB SW:CVAB_ECOLI (P22520) (698 aa) fasta scores: E(): 0%2C 56.1%25 id in 699 aa. This CDS has been disrupted by the insertion of an IS100 element.;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=ABC-transport protein%2C ATP-binding component (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	CDS	104291	105577	.	-	0	ID=cds93;Parent=gene97;Dbxref=PSEUDO:CAL18784.1;Note=Similar to Escherichia coli colicin V secretion ATP-binding protein CvaB SW:CVAB_ECOLI (P22520) (698 aa) fasta scores: E(): 0%2C 56.1%25 id in 699 aa. This CDS has been disrupted by the insertion of an IS100 element.;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=ABC-transport protein%2C ATP-binding component (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	104303	104851	.	-	.	ID=id229;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 183.80%2C E-value 2.8e-51;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	104474	104518	.	-	.	ID=id230;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	104807	104830	.	-	.	ID=id231;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	105149	105214	.	-	.	ID=id232;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	105440	105505	.	-	.	ID=id233;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	repeat_region	105579	107532	.	-	.	ID=id234;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	105579	105606	.	+	.	ID=id235;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	105645	106427	.	-	.	ID=gene98;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO0096
AL590842.1	EMBL	CDS	105645	106427	.	-	0	ID=cds94;Parent=gene98;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL18785.1;Name=CAL18785.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL18785.1;transl_table=11
AL590842.1	EMBL	sequence_feature	105720	106259	.	-	.	ID=id236;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	106077	106100	.	-	.	ID=id237;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	106424	107446	.	-	.	ID=gene99;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO0097
AL590842.1	EMBL	CDS	106424	107446	.	-	0	ID=cds95;Parent=gene99;Dbxref=GOA:Q0WKK0,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q0WKK0,NCBI_GP:CAL18786.1;Name=CAL18786.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL18786.1;transl_table=11
AL590842.1	EMBL	sequence_feature	106568	107101	.	-	.	ID=id238;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 78.30%2C E-value 1.8e-21;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	sequence_feature	107330	107395	.	-	.	ID=id239;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	107339	107422	.	-	.	ID=id240;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	INVERTED	107505	107532	.	-	.	ID=id241;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	107673	107729	.	-	.	ID=gene100;Name=YPO0098;gbkey=Gene;gene_biotype=other;locus_tag=YPO0098
AL590842.1	EMBL	sequence_feature	107673	107729	.	-	.	ID=id242;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	107775	107840	.	-	.	ID=id243;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	107775	107840	.	-	.	ID=gene101;Name=YPO0098;gbkey=Gene;gene_biotype=other;locus_tag=YPO0098
AL590842.1	EMBL	gene	108358	109593	.	-	.	ID=gene102;Name=YPO0099;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0099
AL590842.1	EMBL	CDS	108358	109593	.	-	0	ID=cds96;Parent=gene102;Dbxref=GOA:Q0WKJ9,InterPro:IPR003997,InterPro:IPR006143,InterPro:IPR006144,InterPro:IPR011053,UniProtKB/TrEMBL:Q0WKJ9,NCBI_GP:CAL18787.1;Name=CAL18787.1;Note=Similar to several members of the HlyD family of secretion proteins e.g. Escherichia coli colicin V secretion protein CvaA SW:CVAA_ECOLI (P22519) (413 aa) fasta scores: E(): 0%2C 47.1%25 id in 410 aa and to Escherichia coli MtfA TR:Q46972 (EMBL:U47048) (414 aa) fasta scores: E(): 0%2C 46.6%25 id in 410 aa;gbkey=CDS;inference=similar to sequence:INSDC:U47048;product=putative exported protein;protein_id=CAL18787.1;transl_table=11
AL590842.1	EMBL	sequence_feature	108409	108477	.	-	.	ID=id244;Note=PS00543 HlyD family secretion proteins signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00543
AL590842.1	EMBL	sequence_feature	108451	109446	.	-	.	ID=id245;Note=Pfam match to entry PF00529 HlyD%2C HlyD family secretion protein%2C score 19.80%2C E-value 0.0014;gbkey=misc_feature;inference=protein motif:PF00529
AL590842.1	EMBL	sequence_feature	109489	109554	.	-	.	ID=id246;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	109863	110102	.	+	.	ID=gene103;Name=YPO0100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0100
AL590842.1	EMBL	CDS	109863	110102	.	+	0	ID=cds97;Parent=gene103;Dbxref=UniProtKB/TrEMBL:Q7CL23,NCBI_GP:CAL18788.1;Name=CAL18788.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL18788.1;transl_table=11
AL590842.1	EMBL	gene	110277	110426	.	+	.	ID=gene104;Name=YPO0101;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0101
AL590842.1	EMBL	CDS	110277	110426	.	+	0	ID=cds98;Parent=gene104;Dbxref=UniProtKB/TrEMBL:Q7CL22,NCBI_GP:CAL18789.1;Name=CAL18789.1;Note=Doubtful CDS with no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL18789.1;transl_table=11
AL590842.1	EMBL	sequence_feature	110313	110381	.	+	.	ID=id247;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	110732	111316	.	+	.	ID=gene105;Name=YPO0102;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0102
AL590842.1	EMBL	CDS	110732	111316	.	+	0	ID=cds99;Parent=gene105;Dbxref=InterPro:IPR025326,UniProtKB/TrEMBL:Q0WKJ6,NCBI_GP:CAL18790.1;Name=CAL18790.1;Note=No significant database hits;gbkey=CDS;product=putative exported protein;protein_id=CAL18790.1;transl_table=11
AL590842.1	EMBL	sequence_feature	110750	110818	.	+	.	ID=id248;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	111433	111918	.	-	.	ID=gene106;Name=menG;gbkey=Gene;gene=menG;gene_biotype=protein_coding;locus_tag=YPO0103
AL590842.1	EMBL	CDS	111433	111918	.	-	0	ID=cds100;Parent=gene106;Dbxref=GOA:Q8ZJJ7,InterPro:IPR005493,InterPro:IPR010203,InterPro:IPR014339,NCBI_GP:CAL18791.1;Name=CAL18791.1;Note=Similar to Escherichia coli S-adenosylmethionine:2-demethylmenaquinone methyltransferase MenG SW:MENG_ECOLI (P32165) (161 aa) fasta scores: E(): 0%2C 87.6%25 id in 161 aa;gbkey=CDS;gene=menG;product=S-adenosylmethionine:2-demethylmenaquinone methyltransferase;protein_id=CAL18791.1;transl_table=11
AL590842.1	EMBL	gene	112060	112977	.	-	.	ID=gene107;Name=menA;gbkey=Gene;gene=menA;gene_biotype=protein_coding;locus_tag=YPO0104
AL590842.1	EMBL	CDS	112060	112977	.	-	0	ID=cds101;Parent=gene107;Dbxref=GOA:Q0WKJ4,InterPro:IPR000537,InterPro:IPR004657,InterPro:IPR026046,UniProtKB/TrEMBL:Q0WKJ4,NCBI_GP:CAL18792.1;Name=CAL18792.1;Note=Highly similar to Escherichia coli 1%2C4-dihydroxy-2-naphthoate octaprenyltransferase MenA SW:MENA_ECOLI (P32166) (308 aa) fasta scores: E(): 0%2C 68.1%25 id in 298 aa;gbkey=CDS;gene=menA;inference=protein motif:TMHMM:2.0;product=1%2C4-dihydroxy-2-naphthoate octaprenyltransferase;protein_id=CAL18792.1;transl_table=11
AL590842.1	EMBL	sequence_feature	112159	112224	.	-	.	ID=id249;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=menA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	112240	112305	.	-	.	ID=id250;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=menA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	112369	112434	.	-	.	ID=id251;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=menA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	112450	112506	.	-	.	ID=id252;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=menA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	112546	112602	.	-	.	ID=id253;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=menA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	112618	112683	.	-	.	ID=id254;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=menA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	112789	112845	.	-	.	ID=id255;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=menA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	112861	112914	.	-	.	ID=id256;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=menA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	113213	114544	.	-	.	ID=gene108;Name=hslU;gbkey=Gene;gene=hslU;gene_biotype=protein_coding;locus_tag=YPO0105
AL590842.1	EMBL	CDS	113213	114544	.	-	0	ID=cds102;Parent=gene108;Dbxref=GOA:Q8ZJJ5,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR004491,InterPro:IPR019489,InterPro:IPR027417,NCBI_GP:CAL18793.1;Name=CAL18793.1;Note=Similar to Escherichia coli heat shock protein HslU SW:HSLU_ECOLI (P32168) (443 aa) fasta scores: E(): 0%2C 90.3%25 id in 443 aa;gbkey=CDS;gene=hslU;product=ATP-binding heat shock protein;protein_id=CAL18793.1;transl_table=11
AL590842.1	EMBL	sequence_feature	113396	114391	.	-	.	ID=id257;Note=Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA)%2C score 26.20%2CE-value 1.2e-05;gbkey=misc_feature;gene=hslU;inference=protein motif:PF00004
AL590842.1	EMBL	sequence_feature	114353	114376	.	-	.	ID=id258;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=hslU;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	114615	115139	.	-	.	ID=gene109;Name=hslV;gbkey=Gene;gene=hslV;gene_biotype=protein_coding;locus_tag=YPO0106
AL590842.1	EMBL	CDS	114615	115139	.	-	0	ID=cds103;Parent=gene109;Dbxref=GOA:Q8ZJJ4,InterPro:IPR001353,InterPro:IPR022281,InterPro:IPR023333,InterPro:IPR029055,NCBI_GP:CAL18794.1;Name=CAL18794.1;Note=Similar to Escherichia coli heat shock protein HslV SW:HSLV_ECOLI (P31059) (175 aa) fasta scores: E(): 0%2C 90.8%25 id in 173 aa;gbkey=CDS;gene=hslV;product=heat shock protein;protein_id=CAL18794.1;transl_table=11
AL590842.1	EMBL	sequence_feature	114969	115025	.	-	.	ID=id259;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=hslV;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	115239	116084	.	-	.	ID=gene110;Name=ftsN;gbkey=Gene;gene=ftsN;gene_biotype=protein_coding;gene_synonym=msgA;locus_tag=YPO0107
AL590842.1	EMBL	CDS	115239	116084	.	-	0	ID=cds104;Parent=gene110;Dbxref=GOA:Q7CL21,InterPro:IPR007730,InterPro:IPR011930,UniProtKB/TrEMBL:Q7CL21,NCBI_GP:CAL18795.1;Name=CAL18795.1;Note=Similar to Escherichia coli cell division protein FtsN SW:FTSN_ECOLI (P29131) (319 aa) fasta scores: E(): 7.5e-24%2C 51.3%25 id in 320 aa;gbkey=CDS;gene=ftsN;product=cell division protein;protein_id=CAL18795.1;transl_table=11
AL590842.1	EMBL	gene	116150	117178	.	-	.	ID=gene111;Name=cytR;gbkey=Gene;gene=cytR;gene_biotype=protein_coding;locus_tag=YPO0108
AL590842.1	EMBL	CDS	116150	117178	.	-	0	ID=cds105;Parent=gene111;Dbxref=GOA:Q7CL20,InterPro:IPR000843,InterPro:IPR010982,InterPro:IPR028082,UniProtKB/TrEMBL:Q7CL20,NCBI_GP:CAL18796.1;Name=CAL18796.1;Note=Similar to Escherichia coli transcriptional repressor CytR SW:CYTR_ECOLI (P06964) (341 aa) fasta scores: E(): 0%2C 71.1%25 id in 339 aa;gbkey=CDS;gene=cytR;product=transcriptional repressor;protein_id=CAL18796.1;transl_table=11
AL590842.1	EMBL	sequence_feature	116258	116983	.	-	.	ID=id260;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 177.00%2C E-value 3.1e-49;gbkey=misc_feature;gene=cytR;inference=protein motif:PF00532
AL590842.1	EMBL	gene	117531	119729	.	-	.	ID=gene112;Name=priA;gbkey=Gene;gene=priA;gene_biotype=protein_coding;locus_tag=YPO0110
AL590842.1	EMBL	CDS	117531	119729	.	-	0	ID=cds106;Parent=gene112;Dbxref=GOA:Q7CL19,InterPro:IPR001650,InterPro:IPR005259,InterPro:IPR011545,InterPro:IPR014001,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CL19,NCBI_GP:CAL18797.1;Name=CAL18797.1;Note=Highly similar to Escherichia coli primosomal protein n' PriA SW:PRIA_ECOLI (P17888) (732 aa) fasta scores: E(): 0%2C 73.0%25 id in 732 aa;gbkey=CDS;gene=priA;product=primosomal protein n';protein_id=CAL18797.1;transl_table=11
AL590842.1	EMBL	sequence_feature	119037	119060	.	-	.	ID=id261;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=priA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	119972	120187	.	+	.	ID=gene113;Name=rpmE;gbkey=Gene;gene=rpmE;gene_biotype=protein_coding;locus_tag=YPO0111
AL590842.1	EMBL	CDS	119972	120187	.	+	0	ID=cds107;Parent=gene113;Dbxref=GOA:P58471,InterPro:IPR002150,InterPro:IPR027491,NCBI_GP:CAL18798.1;Name=CAL18798.1;Note=Similar to Escherichia coli 50S ribosomal protein L31 RpmE SW:RL31_ECOLI (P02432) (70 aa) fasta scores: E(): 1.4e-25%2C 81.4%25 id in 70 aa;gbkey=CDS;gene=rpmE;product=50S ribosomal protein L31;protein_id=CAL18798.1;transl_table=11
AL590842.1	EMBL	sequence_feature	119972	120172	.	+	.	ID=id262;Note=Pfam match to entry PF01197 Ribosomal_L31%2C Ribosomal protein L31%2C score 147.10%2C E-value 3.2e-40;gbkey=misc_feature;gene=rpmE;inference=protein motif:PF01197
AL590842.1	EMBL	sequence_feature	120080	120097	.	+	.	ID=id263;Note=PS00190 Cytochrome c family heme-binding site signature.;gbkey=misc_feature;gene=rpmE;inference=protein motif:ProSite:PS00190
AL590842.1	EMBL	sequence_feature	120092	120148	.	+	.	ID=id264;Note=PS01143 Ribosomal protein L31 signature.;gbkey=misc_feature;gene=rpmE;inference=protein motif:ProSite:PS01143
AL590842.1	EMBL	gene	120748	121203	.	-	.	ID=gene114;Name=YPO0112;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0112
AL590842.1	EMBL	CDS	120748	121203	.	-	0	ID=cds108;Parent=gene114;Dbxref=InterPro:IPR008024,UniProtKB/TrEMBL:Q0WKI7,NCBI_GP:CAL18799.1;Name=CAL18799.1;Note=Similar to Escherichia coli hypothetical protein YiaA SW:YIAA_ECOLI (P11287) (145 aa) fasta scores: E(): 0%2C62.5%25 id in 136 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=conserved hypothetical protein;protein_id=CAL18799.1;transl_table=11
AL590842.1	EMBL	sequence_feature	120838	120888	.	-	.	ID=id265;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	120916	120981	.	-	.	ID=id266;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	121027	121080	.	-	.	ID=id267;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	121108	121173	.	-	.	ID=id268;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	121254	121415	.	+	.	ID=gene115;Name=YPO0113;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0113
AL590842.1	EMBL	CDS	121254	121415	.	+	0	ID=cds109;Parent=gene115;Dbxref=UniProtKB/TrEMBL:Q74Y57,NCBI_GP:CAL18800.1;Name=CAL18800.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL18800.1;transl_table=11
AL590842.1	EMBL	gene	121552	121869	.	-	.	ID=gene116;Name=metJ;gbkey=Gene;gene=metJ;gene_biotype=protein_coding;locus_tag=YPO0114
AL590842.1	EMBL	CDS	121552	121869	.	-	0	ID=cds110;Parent=gene116;Dbxref=GOA:Q8ZJI8,InterPro:IPR002084,InterPro:IPR010985,InterPro:IPR023453,NCBI_GP:CAL18801.1;Name=CAL18801.1;Note=Similar to Escherichia coli methionine regulon repressor protein MetJ SW:METJ_ECOLI (P08338) (104 aa) fasta scores: E(): 0%2C 89.4%25 id in 104 aa;gbkey=CDS;gene=metJ;product=transcriptional repressor protein;protein_id=CAL18801.1;transl_table=11
AL590842.1	EMBL	sequence_feature	121555	121866	.	-	.	ID=id269;Note=Pfam match to entry PF01340 MetJ%2C Met Apo-repressor%2CMetJ%2C score 288.90%2C E-value 6.5e-83;gbkey=misc_feature;gene=metJ;inference=protein motif:PF01340
AL590842.1	EMBL	pseudogene	122247	123406	.	+	.	ID=gene117;Name=metB;gbkey=Gene;gene=metB;gene_biotype=pseudogene;locus_tag=YPO0115;pseudo=true
AL590842.1	EMBL	CDS	122247	123406	.	+	0	ID=cds111;Parent=gene117;Note=Similar to Escherichia coli cystathionine gamma-synthase MetB%2C the second stage in methionine biosynthetic pathway SW:METB_ECOLI (P00935) (386 aa) fasta scores: E(): 0%2C 83.3%25 id in 383 aa. This CDS possesses a frameshift mutation following codon 329. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=metB;product=cystathionine gamma-synthase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	122262	123233	.	+	.	ID=id270;Note=Pfam match to entry PF01053 Cys_Met_Meta_PP%2C Cys/Met metabolism PLP-dependent enzyme%2C score 513.20%2C E-value 2e-150;gbkey=misc_feature;gene=metB;inference=protein motif:PF01053
AL590842.1	EMBL	sequence_feature	122814	122858	.	+	.	ID=id271;Note=PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site.;gbkey=misc_feature;gene=metB;inference=protein motif:ProSite:PS00868
AL590842.1	EMBL	gene	123409	125844	.	+	.	ID=gene118;Name=metL;gbkey=Gene;gene=metL;gene_biotype=protein_coding;gene_synonym=metM;locus_tag=YPO0116
AL590842.1	EMBL	CDS	123409	125844	.	+	0	ID=cds112;Parent=gene118;Dbxref=GOA:Q7CL18,InterPro:IPR001048,InterPro:IPR001341,InterPro:IPR001342,InterPro:IPR005106,InterPro:IPR011147,InterPro:IPR016040,InterPro:IPR018042,InterPro:IPR019811,UniProtKB/TrEMBL:Q7CL18,NCBI_GP:CAL18803.1;Name=CAL18803.1;Note=Similar to Escherichia coli bifunctional aspartokinase/homoserine dehydrogenase II MetL SW:AK2H_ECOLI (P00562) (809 aa) fasta scores: E(): 0%2C 84.0%25 id in 804 aa;gbkey=CDS;gene=metL;product=bifunctional aspartokinase/homoserine dehydrogenase II;protein_id=CAL18803.1;transl_table=11
AL590842.1	EMBL	sequence_feature	123442	124185	.	+	.	ID=id272;Note=Pfam match to entry PF00696 aakinase%2C Amino acid kinase family%2C score 141.60%2C E-value 1.4e-38;gbkey=misc_feature;gene=metL;inference=protein motif:PF00696
AL590842.1	EMBL	sequence_feature	123451	123477	.	+	.	ID=id273;Note=PS00324 Aspartokinase signature.;gbkey=misc_feature;gene=metL;inference=protein motif:ProSite:PS00324
AL590842.1	EMBL	sequence_feature	124876	125835	.	+	.	ID=id274;Note=Pfam match to entry PF00742 Homoserine_dh%2CHomoserine dehydrogenase%2C score 518.70%2C E-value 4.3e-152;gbkey=misc_feature;gene=metL;inference=protein motif:PF00742
AL590842.1	EMBL	sequence_feature	125371	125439	.	+	.	ID=id275;Note=PS01042 Homoserine dehydrogenase signature.;gbkey=misc_feature;gene=metL;inference=protein motif:ProSite:PS01042
AL590842.1	EMBL	gene	126077	126961	.	+	.	ID=gene119;Name=metF;gbkey=Gene;gene=metF;gene_biotype=protein_coding;locus_tag=YPO0117
AL590842.1	EMBL	CDS	126077	126961	.	+	0	ID=cds113;Parent=gene119;Dbxref=GOA:Q7CL17,InterPro:IPR003171,InterPro:IPR004620,InterPro:IPR029041,UniProtKB/TrEMBL:Q7CL17,NCBI_GP:CAL18804.1;Name=CAL18804.1;Note=Similar to Erwinia carotovora 5%2C10-methylenetetrahydrofolate reductase MetF SW:METF_ERWCA (P71319) (298 aa) fasta scores: E(): 0%2C 91.8%25 id in 294 aa%2Cand to Escherichia coli 5%2C10-methylenetetrahydrofolate reductase MetF SW:METF_ECOLI (P00394) (296 aa) fasta scores: E(): 0%2C 86.4%25 id in 294 aa%3B~deleted EC_number 1.7.99.5;gbkey=CDS;gene=metF;product=5%2C10-methylenetetrahydrofolate reductase;protein_id=CAL18804.1;transl_table=11
AL590842.1	EMBL	sequence_feature	126107	126949	.	+	.	ID=id276;Note=Pfam match to entry PF02219 MTHFR%2CMethylenetetrahydrofolate reductase%2C score 545.30%2C E-value 4.1e-160;gbkey=misc_feature;gene=metF;inference=protein motif:PF02219
AL590842.1	EMBL	sequence_feature	127098	128558	.	-	.	ID=id277;Note=IS1397-like insertion element: IS1661.;gbkey=misc_feature
AL590842.1	EMBL	INVERTED	127098	127130	.	+	.	ID=id278;Note=Inverted repeat for IS1661 insertion element;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	127139	127924	.	-	.	ID=gene120;Name=YPO0118;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0118
AL590842.1	EMBL	CDS	127139	127924	.	-	0	ID=cds114;Parent=gene120;Dbxref=GOA:Q7CKI6,InterPro:IPR001584,InterPro:IPR012337,InterPro:IPR025948,UniProtKB/TrEMBL:Q7CKI6,NCBI_GP:CAL18805.1;Name=CAL18805.1;Note=Similar to Escherichia coli insertion sequence IS1397 transposase%2C OrfB TR:Q47310 (EMBL:X92970) (240 aa) fasta scores: E(): 0%2C 53.0%25 id in 234 aa;gbkey=CDS;inference=similar to sequence:INSDC:X92970;product=transposase for insertion sequence IS1661;protein_id=CAL18805.1;transl_table=11
AL590842.1	EMBL	sequence_feature	127157	127636	.	-	.	ID=id279;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 141.50%2C E-value 9.6e-40;gbkey=misc_feature;inference=protein motif:PF00665
AL590842.1	EMBL	gene	127978	128493	.	-	.	ID=gene121;Name=YPO0119;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0119
AL590842.1	EMBL	CDS	127978	128493	.	-	0	ID=cds115;Parent=gene121;Dbxref=GOA:Q74RD6,InterPro:IPR009057,InterPro:IPR010921,InterPro:IPR011991,UniProtKB/TrEMBL:Q74RD6,NCBI_GP:CAL18806.1;Name=CAL18806.1;Note=Similar to Escherichia coli insertion element IS1397 OrfA hypothetical 20.1 kDa protein SW:YI9A_ECOLI (Q47309) (173 aa) fasta scores: E(): 2.3e-20%2C 39.6%25 id in 169 aa;gbkey=CDS;product=insertion element DNA-binding protein;protein_id=CAL18806.1;transl_table=11
AL590842.1	EMBL	sequence_feature	128371	128436	.	-	.	ID=id280;Note=Predicted helix-turn-helix motif with score 1691 (+4.95 SD) at aa 20-41%2C sequence ATLRETARQFSVGKSPLTRWIR;gbkey=misc_feature
AL590842.1	EMBL	INVERTED	128526	128558	.	-	.	ID=id281;Note=Inverted repeat for IS1661 insertion element;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	128686	129444	.	-	.	ID=gene122;Name=glpR;gbkey=Gene;gene=glpR;gene_biotype=protein_coding;locus_tag=YPO0120
AL590842.1	EMBL	CDS	128686	129444	.	-	0	ID=cds116;Parent=gene122;Dbxref=GOA:Q7CFX9,InterPro:IPR001034,InterPro:IPR011991,InterPro:IPR014036,InterPro:IPR018356,UniProtKB/TrEMBL:Q7CFX9,NCBI_GP:CAL18807.1;Name=CAL18807.1;Note=Similar to Escherichia coli glycerol-3-phosphate regulon repressor GlpR SW:GLPR_ECOLI (P09392) (252 aa) fasta scores: E(): 0%2C 77.0%25 id in 252 aa;gbkey=CDS;gene=glpR;product=glycerol-3-phosphate repressor protein;protein_id=CAL18807.1;transl_table=11
AL590842.1	EMBL	sequence_feature	128752	129429	.	-	.	ID=id282;Note=Pfam match to entry PF00455 deoR%2C Bacterial regulatory proteins%2C deoR family%2C score 376.30%2C E-value 3.1e-109;gbkey=misc_feature;gene=glpR;inference=protein motif:PF00455
AL590842.1	EMBL	sequence_feature	129322	129387	.	-	.	ID=id283;Note=Predicted helix-turn-helix motif with score 1448 (+4.12 SD) at aa 20-41%2C sequence VSTEELVEHFAVSPQTIRRDLN;gbkey=misc_feature;gene=glpR
AL590842.1	EMBL	sequence_feature	129325	129429	.	-	.	ID=id284;Note=PS00894 Bacterial regulatory proteins%2C deoR family signature.;gbkey=misc_feature;gene=glpR;inference=protein motif:ProSite:PS00894
AL590842.1	EMBL	gene	129479	130315	.	-	.	ID=gene123;Name=glpG;gbkey=Gene;gene=glpG;gene_biotype=protein_coding;locus_tag=YPO0121
AL590842.1	EMBL	CDS	129479	130315	.	-	0	ID=cds117;Parent=gene123;Dbxref=GOA:Q7CFX8,InterPro:IPR002610,InterPro:IPR022732,InterPro:IPR022764,InterPro:IPR023662,NCBI_GP:CAL18808.1;Name=CAL18808.1;Note=Similar to Escherichia coli hypothetical protein GlpG SW:GLPG_ECOLI (P09391) (276 aa) fasta scores: E(): 0%2C52.7%25 id in 275 aa;gbkey=CDS;gene=glpG;inference=protein motif:TMHMM:2.0;product=probable membrane protein;protein_id=CAL18808.1;transl_table=11
AL590842.1	EMBL	sequence_feature	129494	129928	.	-	.	ID=id285;Note=Pfam match to entry PF01694 Rhomboid%2C Rhomboid family%2C score 135.60%2C E-value 9.1e-37;gbkey=misc_feature;gene=glpG;inference=protein motif:PF01694
AL590842.1	EMBL	sequence_feature	129515	129580	.	-	.	ID=id286;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=glpG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	129593	129643	.	-	.	ID=id287;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=glpG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	129671	129736	.	-	.	ID=id288;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=glpG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	129749	129805	.	-	.	ID=id289;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=glpG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	129827	129892	.	-	.	ID=id290;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=glpG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	129953	130018	.	-	.	ID=id291;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=glpG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	130333	130716	.	-	.	ID=gene124;Name=YPO0122;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0122
AL590842.1	EMBL	CDS	130333	130716	.	-	0	ID=cds118;Parent=gene124;Dbxref=GOA:Q8ZJI3,InterPro:IPR001763,InterPro:IPR023695,NCBI_GP:CAL18809.1;Name=CAL18809.1;Note=Similar to Escherichia coli GlpE hypothetical protein SW:GLPE_ECOLI (P09390) (108 aa) fasta scores: E(): 5.9e-28%2C 66.3%25 id in 104 aa. Note alternative possible translational start site at codon 19;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL18809.1;transl_table=11
AL590842.1	EMBL	sequence_feature	130366	130635	.	-	.	ID=id292;Note=Pfam match to entry PF00581 Rhodanese%2CRhodanese-like domain%2C score 67.20%2C E-value 3.5e-16;gbkey=misc_feature;inference=protein motif:PF00581
AL590842.1	EMBL	gene	131037	133748	.	-	.	ID=gene125;Name=malT;gbkey=Gene;gene=malT;gene_biotype=protein_coding;locus_tag=YPO0123
AL590842.1	EMBL	CDS	131037	133748	.	-	0	ID=cds119;Parent=gene125;Dbxref=GOA:Q8ZJI2,InterPro:IPR000792,InterPro:IPR011990,InterPro:IPR011991,InterPro:IPR016032,InterPro:IPR023768,InterPro:IPR027417,NCBI_GP:CAL18810.1;Name=CAL18810.1;Note=Similar to Escherichia coli positive regulator of the maltose regulon MalT SW:MALT_ECOLI (P06993) (901 aa) fasta scores: E(): 0%2C 74.2%25 id in 902 aa.;gbkey=CDS;gene=malT;product=maltose regulon positive regulatory protein;protein_id=CAL18810.1;transl_table=11
AL590842.1	EMBL	sequence_feature	131046	131243	.	-	.	ID=id293;Note=Pfam match to entry PF00196 GerE%2C Bacterial regulatory proteins%2C luxR family%2C score 89.40%2C E-value 7.5e-23;gbkey=misc_feature;gene=malT;inference=protein motif:PF00196
AL590842.1	EMBL	sequence_feature	131109	131192	.	-	.	ID=id294;Note=PS00622 Bacterial regulatory proteins%2C luxR family signature.;gbkey=misc_feature;gene=malT;inference=protein motif:ProSite:PS00622
AL590842.1	EMBL	pseudogene	134066	136470	.	+	.	ID=gene126;Name=malP;gbkey=Gene;gene=malP;gene_biotype=pseudogene;locus_tag=YPO0124;pseudo=true
AL590842.1	EMBL	CDS	134066	136470	.	+	0	ID=cds120;Parent=gene126;Note=Similar to Escherichia coli maltodextrin phosphorylase%2C part of the E. coli maltose and maltodextrin transport and utilisation system%2C MalP SW:PHSM_ECOLI (P00490) (796 aa) fasta scores: E(): 0%2C 75.2%25 id in 801 aa. Contains a frameshift after codon 107. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=malP;product=maltodextrin phosphorylase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	134422	136467	.	+	.	ID=id295;Note=Pfam match to entry PF00343 phosphorylase%2CCarbohydrate phosphorylases%2C score 1475.30%2C E-value 0;gbkey=misc_feature;gene=malP;inference=protein motif:PF00343
AL590842.1	EMBL	sequence_feature	135991	136029	.	+	.	ID=id296;Note=PS00102 Phosphorylase pyridoxal-phosphate attachment site.;gbkey=misc_feature;gene=malP;inference=protein motif:ProSite:PS00102
AL590842.1	EMBL	gene	136483	138579	.	+	.	ID=gene127;Name=malQ;gbkey=Gene;gene=malQ;gene_biotype=protein_coding;locus_tag=YPO0126
AL590842.1	EMBL	CDS	136483	138579	.	+	0	ID=cds121;Parent=gene127;Dbxref=GOA:Q7CFX4,InterPro:IPR003385,InterPro:IPR013781,InterPro:IPR017853,UniProtKB/TrEMBL:Q7CFX4,NCBI_GP:CAL18812.1;Name=CAL18812.1;Note=Similar to Escherichia coli 4-alpha-glucanotransferase MalQ SW:MALQ_ECOLI (P15977) (694 aa) fasta scores: E(): 0%2C 68.5%25 id in 693 aa;gbkey=CDS;gene=malQ;product=4-alpha-glucanotransferase;protein_id=CAL18812.1;transl_table=11
AL590842.1	EMBL	sequence_feature	136933	138549	.	+	.	ID=id297;Note=Pfam match to entry PF02446 4A_glucanotrans%2C %2C score 742.50%2C E-value 1.8e-219;gbkey=misc_feature;gene=malQ;inference=protein motif:PF02446
AL590842.1	EMBL	gene	138908	139483	.	-	.	ID=gene128;Name=YPO0127;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0127
AL590842.1	EMBL	CDS	138908	139483	.	-	0	ID=cds122;Parent=gene128;Dbxref=GOA:Q8ZJI0,InterPro:IPR000361,InterPro:IPR001075,InterPro:IPR017726,NCBI_GP:CAL18813.1;Name=CAL18813.1;Note=Similar to Escherichia coli hypothetical protein YhgI SW:YHGI_ECOLI (P46847) (191 aa) fasta scores: E(): 0%2C89.5%25 id in 191 aa. Similar in small regions to nitrogen fixation proteins e.g. Bacillus halodurans nitrogen fixation protein BH3419 TR:Q9K7E5 (EMBL:AP001518) (79 aa) fasta scores: E(): 0.0062%2C 31.3%25 id in 80 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001518;product=conserved hypothetical protein;protein_id=CAL18813.1;transl_table=11
AL590842.1	EMBL	sequence_feature	138944	139153	.	-	.	ID=id298;Note=Pfam match to entry PF01106 NifU-like%2C NifU-like domain%2C score 24.30%2C E-value 5.1e-06;gbkey=misc_feature;inference=protein motif:PF01106
AL590842.1	EMBL	sequence_feature	139037	139069	.	-	.	ID=id299;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	139163	139483	.	-	.	ID=id300;Note=Pfam match to entry PF01521 HesB-like%2C HesB-like domain%2C score 127.00%2C E-value 3.4e-34;gbkey=misc_feature;inference=protein motif:PF01521
AL590842.1	EMBL	gene	139543	140244	.	-	.	ID=gene129;Name=YPO0128;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0128
AL590842.1	EMBL	CDS	139543	140244	.	-	0	ID=cds123;Parent=gene129;Dbxref=GOA:Q7CFX6,InterPro:IPR000836,InterPro:IPR029057,UniProtKB/TrEMBL:Q7CFX6,NCBI_GP:CAL18814.1;Name=CAL18814.1;Note=Similar to competence proteins from several e.g. Haemophilus influenzae competence protein ComF SW:COMF_HAEIN (P31773) (229 aa) fasta scores: E(): 1.9e-26%2C38.2%25 id in 228 aa. Also similar to Escherichia coli hypothetical 25.7 kDa protein in bioH-gntT intergenic region yhgH SW:YHGH_ECOLI (P46846) (227 aa) fasta scores: E(): 0%2C 47.6%25 id in 233 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL18814.1;transl_table=11
AL590842.1	EMBL	gene	140331	141107	.	+	.	ID=gene130;Name=bioH;gbkey=Gene;gene=bioH;gene_biotype=protein_coding;locus_tag=YPO0129
AL590842.1	EMBL	CDS	140331	141107	.	+	0	ID=cds124;Parent=gene130;Dbxref=GOA:Q74Y45,InterPro:IPR010076,InterPro:IPR029058,NCBI_GP:CAL18815.1;Name=CAL18815.1;Note=Similar to Escherichia coli protein BioH%2C implicated in biotin biosynthesis%2C SW:BIOH_ECOLI (P13001) (256 aa) fasta scores: E(): 0%2C 64.6%25 id in 254 aa;gbkey=CDS;gene=bioH;product=putative biotin biosynthesis protein;protein_id=CAL18815.1;transl_table=11
AL590842.1	EMBL	sequence_feature	140448	141089	.	+	.	ID=id301;Note=Pfam match to entry PF00561 abhydrolase%2C alpha/beta hydrolase fold%2C score 109.70%2C E-value 5.4e-29;gbkey=misc_feature;gene=bioH;inference=protein motif:PF00561
AL590842.1	EMBL	gene	141277	141546	.	+	.	ID=gene131;Name=YPO0130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0130
AL590842.1	EMBL	CDS	141277	141546	.	+	0	ID=cds125;Parent=gene131;Dbxref=InterPro:IPR010854,InterPro:IPR025543,UniProtKB/TrEMBL:Q0WKH2,NCBI_GP:CAL18816.1;Name=CAL18816.1;Note=Similar to Escherichia coli hypothetical protein precursor YhcN SW:YHCN_ECOLI (P46477) (87 aa) fasta scores: E(): 3.6e-08%2C 46.1%25 id in 89 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL18816.1;transl_table=11
AL590842.1	EMBL	gene	141684	141941	.	-	.	ID=gene132;Name=YPO0131;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0131
AL590842.1	EMBL	CDS	141684	141941	.	-	0	ID=cds126;Parent=gene132;Dbxref=GOA:Q7CFX5,InterPro:IPR011991,InterPro:IPR015102,InterPro:IPR023732,NCBI_GP:CAL18817.1;Name=CAL18817.1;Note=Similar to Escherichia coli hypothetical protein YhgG SW:YHGG_ECOLI (P46845) (78 aa) fasta scores: E(): 3.9e-13%2C 56.3%25 id in 71 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL18817.1;transl_table=11
AL590842.1	EMBL	gene	141977	144292	.	-	.	ID=gene133;Name=feoB;gbkey=Gene;gene=feoB;gene_biotype=protein_coding;locus_tag=YPO0132
AL590842.1	EMBL	CDS	141977	144292	.	-	0	ID=cds127;Parent=gene133;Dbxref=GOA:Q74Y42,InterPro:IPR003373,InterPro:IPR005225,InterPro:IPR011619,InterPro:IPR011640,InterPro:IPR011642,InterPro:IPR027417,UniProtKB/TrEMBL:Q74Y42,NCBI_GP:CAL18818.1;Name=CAL18818.1;Note=Similar to Escherichia coli ferrous iron transport protein B%2C FeoB SW:FEOB_ECOLI (P33650) (773 aa) fasta scores: E(): 0%2C 74.4%25 id in 774 aa;gbkey=CDS;gene=feoB;inference=protein motif:TMHMM:2.0;product=ferrous iron transport protein B;protein_id=CAL18818.1;transl_table=11
AL590842.1	EMBL	sequence_feature	142064	142117	.	-	.	ID=id302;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=feoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	142145	144271	.	-	.	ID=id303;Note=Pfam match to entry PF02421 FeoB%2C %2C score 1238.20%2CE-value 0;gbkey=misc_feature;gene=feoB;inference=protein motif:PF02421
AL590842.1	EMBL	sequence_feature	142148	142213	.	-	.	ID=id304;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=feoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	142235	142300	.	-	.	ID=id305;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=feoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	142694	142759	.	-	.	ID=id306;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=feoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	142865	142930	.	-	.	ID=id307;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=feoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	142961	143026	.	-	.	ID=id308;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=feoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	143066	143131	.	-	.	ID=id309;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=feoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	143111	143134	.	-	.	ID=id310;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=feoB;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	143192	143257	.	-	.	ID=id311;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=feoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	143279	143344	.	-	.	ID=id312;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=feoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	143390	143455	.	-	.	ID=id313;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=feoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	144242	144265	.	-	.	ID=id314;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=feoB;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	144384	144611	.	-	.	ID=gene134;Name=feoA;gbkey=Gene;gene=feoA;gene_biotype=protein_coding;locus_tag=YPO0133
AL590842.1	EMBL	CDS	144384	144611	.	-	0	ID=cds128;Parent=gene134;Dbxref=GOA:Q7CFX2,InterPro:IPR007167,InterPro:IPR008988,UniProtKB/TrEMBL:Q7CFX2,NCBI_GP:CAL18819.1;Name=CAL18819.1;Note=Similar to Escherichia coli ferrous iron transport protein A%2C the function of which is not known%2C FeoA SW:FEOA_ECOLI (P33649) (75 aa) fasta scores: E(): 5.8e-19%2C77.5%25 id in 71 aa;gbkey=CDS;gene=feoA;product=hypothetical ferrous iron transport protein A;protein_id=CAL18819.1;transl_table=11
AL590842.1	EMBL	gene	145135	147510	.	-	.	ID=gene135;Name=YPO0134;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0134
AL590842.1	EMBL	CDS	145135	147510	.	-	0	ID=cds129;Parent=gene135;Dbxref=GOA:Q7CFX1,InterPro:IPR003029,InterPro:IPR003583,InterPro:IPR006641,InterPro:IPR010994,InterPro:IPR012337,InterPro:IPR012340,InterPro:IPR018974,InterPro:IPR022967,InterPro:IPR023097,InterPro:IPR023319,InterPro:IPR023323,UniProtKB/TrEMBL:Q7CFX1,NCBI_GP:CAL18820.1;Name=CAL18820.1;Note=Similar to Escherichia coli protein YhgF SW:YHGF_ECOLI (P46837) (773 aa) fasta scores: E(): 0%2C 82.7%25 id in 791 aa. Also similar to a transcriptional accessory protein from Bordetella pertussis%2C the exact function of which is not known: Tex protein SW:TEX_BORPE (Q45388) (791 aa) fasta scores: E(): 0%2C 58.6%25 id in 783 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL18820.1;transl_table=11
AL590842.1	EMBL	sequence_feature	145354	145575	.	-	.	ID=id315;Note=Pfam match to entry PF00575 S1%2C S1 RNA binding domain%2C score 100.10%2C E-value 4.5e-26;gbkey=misc_feature;inference=protein motif:PF00575
AL590842.1	EMBL	gene	148044	148559	.	+	.	ID=gene136;Name=greB;gbkey=Gene;gene=greB;gene_biotype=protein_coding;locus_tag=YPO0135
AL590842.1	EMBL	CDS	148044	148559	.	+	0	ID=cds130;Parent=gene136;Dbxref=GOA:Q8ZJH2,InterPro:IPR001437,InterPro:IPR006358,InterPro:IPR018151,InterPro:IPR022691,InterPro:IPR023459,InterPro:IPR028624,NCBI_GP:CAL18821.1;Name=CAL18821.1;Note=Similar to Haemophilus influenzae transcription elongation factor GreB SW:GREB_HAEIN (P43882) (158 aa) fasta scores: E(): 0%2C 74.4%25 id in 156 aa;gbkey=CDS;gene=greB;product=transcription elongation factor;protein_id=CAL18821.1;transl_table=11
AL590842.1	EMBL	sequence_feature	148047	148514	.	+	.	ID=id316;Note=Pfam match to entry PF01272 GreA_GreB%2C Prokaryotic transcription elongation factor%2C GreA/GreB%2C score 288.70%2CE-value 7.2e-83;gbkey=misc_feature;gene=greB;inference=protein motif:PF01272
AL590842.1	EMBL	sequence_feature	148065	148190	.	+	.	ID=id317;Note=PS00829 Prokaryotic transcription elongation factors signature 1.;gbkey=misc_feature;gene=greB;inference=protein motif:ProSite:PS00829
AL590842.1	EMBL	sequence_feature	148401	148451	.	+	.	ID=id318;Note=PS00830 Prokaryotic transcription elongation factors signature 2.;gbkey=misc_feature;gene=greB;inference=protein motif:ProSite:PS00830
AL590842.1	EMBL	gene	148695	149414	.	+	.	ID=gene137;Name=kmt;gbkey=Gene;gene=kmt;gene_biotype=protein_coding;gene_synonym=ompB,ompR;locus_tag=YPO0136
AL590842.1	EMBL	CDS	148695	149414	.	+	0	ID=cds131;Parent=gene137;Dbxref=GOA:Q7CFX0,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:Q7CFX0,NCBI_GP:CAL18822.1;Name=CAL18822.1;Note=Similar to Escherichia coli transcriptional regulatory protein OmpR SW:OMPR_ECOLI (P03025) (239 aa) fasta scores: E(): 0%2C 98.7%25 id in 239 aa and to Yersinia enterocolitica OmpR TR:P74982 (EMBL:Y08950) (239 aa) fasta scores: E(): 0%2C 98.7%25 id in 239 aa;gbkey=CDS;gene=kmt;inference=similar to sequence:INSDC:Y08950;product=transcriptional regulatory protein;protein_id=CAL18822.1;transl_table=11
AL590842.1	EMBL	sequence_feature	148707	149042	.	+	.	ID=id319;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 145.90%2C E-value 7.1e-40;gbkey=misc_feature;gene=kmt;inference=protein motif:PF00072
AL590842.1	EMBL	sequence_feature	149163	149381	.	+	.	ID=id320;Note=Pfam match to entry PF00486 trans_reg_C%2CTranscriptional regulatory protein%2C C terminal%2C score 126.80%2C E-value 1.2e-36;gbkey=misc_feature;gene=kmt;inference=protein motif:PF00486
AL590842.1	EMBL	gene	149411	150763	.	+	.	ID=gene138;Name=envZ;gbkey=Gene;gene=envZ;gene_biotype=protein_coding;gene_synonym=ompB,perA,tpo;locus_tag=YPO0137
AL590842.1	EMBL	CDS	149411	150763	.	+	0	ID=cds132;Parent=gene138;Dbxref=GOA:Q7CFW9,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,UniProtKB/TrEMBL:Q7CFW9,NCBI_GP:CAL18823.1;Name=CAL18823.1;Note=Similar to Escherichia coli osmolarity sensor protein EnvZ SW:ENVZ_ECOLI (P02933) (450 aa) fasta scores: E(): 0%2C 86.6%25 id in 440 aa%2C and to Yersinia enterocolitica EnvZ TR:O06468 (EMBL:Y08950) (450 aa) fasta scores: E(): 0%2C93.8%25 id in 450 aa;gbkey=CDS;gene=envZ;inference=similar to sequence:INSDC:Y08950;product=osmolarity sensor protein;protein_id=CAL18823.1;transl_table=11
AL590842.1	EMBL	sequence_feature	149447	149494	.	+	.	ID=id321;Note=PS00038 Myc-type%2C 'helix-loop-helix' dimerization domain signature.;gbkey=misc_feature;gene=envZ;inference=protein motif:ProSite:PS00038
AL590842.1	EMBL	sequence_feature	149453	149521	.	+	.	ID=id322;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=envZ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	149888	150097	.	+	.	ID=id323;Note=Pfam match to entry PF00672 DUF5%2C HAMP domain%2C score 52.10%2C E-value 1.2e-11;gbkey=misc_feature;gene=envZ;inference=protein motif:PF00672
AL590842.1	EMBL	sequence_feature	149888	149947	.	+	.	ID=id324;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=envZ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	150137	150721	.	+	.	ID=id325;Note=Pfam match to entry PF00512 signal%2C Histidine kinase%2C score 192.80%2C E-value 5.3e-54;gbkey=misc_feature;gene=envZ;inference=protein motif:PF00512
AL590842.1	EMBL	gene	150898	152517	.	-	.	ID=gene139;Name=pck;gbkey=Gene;gene=pck;gene_biotype=protein_coding;gene_synonym=pckA;locus_tag=YPO0138
AL590842.1	EMBL	CDS	150898	152517	.	-	0	ID=cds133;Parent=gene139;Dbxref=GOA:Q8ZJG9,InterPro:IPR001272,InterPro:IPR008210,InterPro:IPR013035,InterPro:IPR015994,NCBI_GP:CAL18824.1;Name=CAL18824.1;Note=Similar to Escherichia coli phosphoenolpyruvate carboxykinase [ATP]%2C PckA SW:PPCK_ECOLI (P22259) (540 aa) fasta scores: E(): 0%2C 87.9%25 id in 535 aa;gbkey=CDS;gene=pck;product=phosphoenolpyruvate carboxykinase [ATP];protein_id=CAL18824.1;transl_table=11
AL590842.1	EMBL	sequence_feature	151042	152466	.	-	.	ID=id326;Note=Pfam match to entry PF01293 PEPCK_ATP%2CPhosphoenolpyruvate carboxykinase%2C score 1212.90%2C E-value 0;gbkey=misc_feature;gene=pck;inference=protein motif:PF01293
AL590842.1	EMBL	sequence_feature	151681	151728	.	-	.	ID=id327;Note=PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature.;gbkey=misc_feature;gene=pck;inference=protein motif:ProSite:PS00532
AL590842.1	EMBL	sequence_feature	151756	151779	.	-	.	ID=id328;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=pck;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	152714	153595	.	-	.	ID=gene140;Name=hslO;gbkey=Gene;gene=hslO;gene_biotype=protein_coding;locus_tag=YPO0139
AL590842.1	EMBL	CDS	152714	153595	.	-	0	ID=cds134;Parent=gene140;Dbxref=GOA:Q8ZJG8,InterPro:IPR000397,InterPro:IPR016153,InterPro:IPR016154,InterPro:IPR023212,NCBI_GP:CAL18825.1;Name=CAL18825.1;Note=Similar to Escherichia coli 33 kDa chaperonin HslO SW:HSLO_ECOLI (P45803) (292 aa) fasta scores: E(): 0%2C 71.7%25 id in 293 aa;gbkey=CDS;gene=hslO;product=heat-shock chaperonin;protein_id=CAL18825.1;transl_table=11
AL590842.1	EMBL	sequence_feature	152753	153583	.	-	.	ID=id329;Note=Pfam match to entry PF01430 HSP33%2C Hsp33 protein%2Cscore 487.10%2C E-value 1.4e-142;gbkey=misc_feature;gene=hslO;inference=protein motif:PF01430
AL590842.1	EMBL	gene	153758	154165	.	-	.	ID=gene141;Name=hslR;gbkey=Gene;gene=hslR;gene_biotype=protein_coding;locus_tag=YPO0140
AL590842.1	EMBL	CDS	153758	154165	.	-	0	ID=cds135;Parent=gene141;Dbxref=GOA:Q7CFW8,InterPro:IPR002942,InterPro:IPR025708,UniProtKB/TrEMBL:Q7CFW8,NCBI_GP:CAL18826.1;Name=CAL18826.1;Note=Similar to Escherichia coli heat shock protein 15 HslR SW:HSLR_ECOLI (P45802) (133 aa) fasta scores: E(): 0%2C73.3%25 id in 135 aa;gbkey=CDS;gene=hslR;product=heat shock protein 15;protein_id=CAL18826.1;transl_table=11
AL590842.1	EMBL	sequence_feature	153995	154135	.	-	.	ID=id330;Note=Pfam match to entry PF01479 S4%2C S4 domain%2C score 54.00%2C E-value 3.2e-12;gbkey=misc_feature;gene=hslR;inference=protein motif:PF01479
AL590842.1	EMBL	gene	154194	154874	.	-	.	ID=gene142;Name=YPO0141;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0141
AL590842.1	EMBL	CDS	154194	154874	.	-	0	ID=cds136;Parent=gene142;Dbxref=GOA:Q7CFW7,InterPro:IPR006439,InterPro:IPR023214,UniProtKB/TrEMBL:Q7CFW7,NCBI_GP:CAL18827.1;Name=CAL18827.1;Note=Similar to Escherichia coli hypothetical protein YrfG SW:YRFG_ECOLI (P45801) (222 aa) fasta scores: E(): 0%2C67.0%25 id in 221 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL18827.1;transl_table=11
AL590842.1	EMBL	sequence_feature	154290	154847	.	-	.	ID=id331;Note=Pfam match to entry PF00702 Hydrolase%2C haloacid dehalogenase-like hydrolase%2C score 93.60%2C E-value 4e-24;gbkey=misc_feature;inference=protein motif:PF00702
AL590842.1	EMBL	gene	155018	157165	.	-	.	ID=gene143;Name=YPO0142;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0142
AL590842.1	EMBL	CDS	155018	157165	.	-	0	ID=cds137;Parent=gene143;Dbxref=GOA:P58722,InterPro:IPR010771,NCBI_GP:CAL18828.1;Name=CAL18828.1;Note=Similar to Escherichia coli hypothetical 79.5 kDa protein in mrcA-pckA intergenic region YrfF SW:YRFF_ECOLI (P45800) (711 aa) fasta scores: E(): 0%2C 53.6%25 id in 715 aa and to Proteus mirabilis UmoB TR:O86988 (EMBL:U66822) (702 aa) fasta scores: E(): 0%2C 43.4%25 id in 719 aa;gbkey=CDS;inference=similar to sequence:INSDC:U66822;product=putative membrane protein;protein_id=CAL18828.1;transl_table=11
AL590842.1	EMBL	sequence_feature	155117	155182	.	-	.	ID=id332;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	156053	156118	.	-	.	ID=id333;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	156401	156466	.	-	.	ID=id334;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	156482	156547	.	-	.	ID=id335;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	157088	157153	.	-	.	ID=id336;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	157445	157639	.	+	.	ID=gene144;Name=YPO0143;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0143
AL590842.1	EMBL	CDS	157445	157639	.	+	0	ID=cds138;Parent=gene144;Dbxref=UniProtKB/TrEMBL:Q74Y35,NCBI_GP:CAL18829.1;Name=CAL18829.1;Note=Doubtful CDS with no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL18829.1;transl_table=11
AL590842.1	EMBL	gene	157752	158297	.	+	.	ID=gene145;Name=YPO0144;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0144
AL590842.1	EMBL	CDS	157752	158297	.	+	0	ID=cds139;Parent=gene145;Dbxref=GOA:Q7CFW6,InterPro:IPR000086,InterPro:IPR015797,InterPro:IPR020084,UniProtKB/TrEMBL:Q7CFW6,NCBI_GP:CAL18830.1;Name=CAL18830.1;Note=Similar to Escherichia coli ADP compounds hydrolase NudE SW:NUDE_ECOLI (P45799) (186 aa) fasta scores: E(): 0%2C74.7%25 id in 178 aa;gbkey=CDS;product=putative hydrolase;protein_id=CAL18830.1;transl_table=11
AL590842.1	EMBL	sequence_feature	157884	158279	.	+	.	ID=id337;Note=Pfam match to entry PF00293 mutT%2C Bacterial mutT protein%2C score 61.90%2C E-value 1.4e-14;gbkey=misc_feature;inference=protein motif:PF00293
AL590842.1	EMBL	sequence_feature	157986	158045	.	+	.	ID=id338;Note=PS00893 mutT domain signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00893
AL590842.1	EMBL	gene	158433	160988	.	-	.	ID=gene146;Name=b3396;gbkey=Gene;gene=b3396;gene_biotype=protein_coding;gene_synonym=mrcA,ponA;locus_tag=YPO0145
AL590842.1	EMBL	CDS	158433	160988	.	-	0	ID=cds140;Parent=gene146;Dbxref=GOA:Q74Y33,InterPro:IPR001264,InterPro:IPR001460,InterPro:IPR011816,InterPro:IPR012338,InterPro:IPR012340,InterPro:IPR023346,UniProtKB/TrEMBL:Q74Y33,NCBI_GP:CAL18831.1;Name=CAL18831.1;Note=Similar to Escherichia coli penicillin-binding protein 1A MrcA SW:PBPA_ECOLI (P02918) (850 aa) fasta scores: E(): 0%2C 77.8%25 id in 851 aa;gbkey=CDS;gene=b3396;product=penicillin-binding protein;protein_id=CAL18831.1;transl_table=11
AL590842.1	EMBL	sequence_feature	158652	159782	.	-	.	ID=id339;Note=Pfam match to entry PF00905 Transpeptidase%2CPenicillin binding protein transpeptidase domain%2C score 42.00%2C E-value 4.6e-09;gbkey=misc_feature;gene=b3396;inference=protein motif:PF00905
AL590842.1	EMBL	sequence_feature	160341	160847	.	-	.	ID=id340;Note=Pfam match to entry PF00912 Transglycosyl%2CTransglycosylase%2C score 372.80%2C E-value 3.5e-108;gbkey=misc_feature;gene=b3396;inference=protein motif:PF00912
AL590842.1	EMBL	gene	161063	162004	.	+	.	ID=gene147;Name=YPO0146;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0146
AL590842.1	EMBL	CDS	161063	162004	.	+	0	ID=cds141;Parent=gene147;Dbxref=GOA:Q7CFW5,UniProtKB/TrEMBL:Q7CFW5,NCBI_GP:CAL18832.1;Name=CAL18832.1;Note=Weakly similar to Escherichia coli hypothetical protein YrfD SW:YRFD_ECOLI (P45753) (259 aa) fasta scores: E(): 9.6e-09%2C 25.1%25 id in 291 aa;gbkey=CDS;product=hypothetical protein;protein_id=CAL18832.1;transl_table=11
AL590842.1	EMBL	gene	162004	162609	.	+	.	ID=gene148;Name=YPO0147;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0147
AL590842.1	EMBL	CDS	162004	162609	.	+	0	ID=cds142;Parent=gene148;Dbxref=InterPro:IPR007813,UniProtKB/TrEMBL:Q0WKF5,NCBI_GP:CAL18833.1;Name=CAL18833.1;Note=Similar to Haemophilus influenzae competence protein B ComB SW:COMB_HAEIN (P31769) (168 aa) fasta scores: E(): 0.018%2C 26.6%25 id in 169 aa and to Escherichia coli hypothetical protein YrfC SW:YRFC_ECOLI (P45752) (179 aa) fasta scores: E(): 2.7e-07%2C 25.7%25 id in 179 aa;gbkey=CDS;product=putative membrane protein;protein_id=CAL18833.1;transl_table=11
AL590842.1	EMBL	sequence_feature	162061	162129	.	+	.	ID=id341;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	162602	163183	.	+	.	ID=gene149;Name=YPO0148;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0148
AL590842.1	EMBL	CDS	162602	163183	.	+	0	ID=cds143;Parent=gene149;Dbxref=GOA:Q0WKF4,InterPro:IPR006052,UniProtKB/TrEMBL:Q0WKF4,NCBI_GP:CAL18834.1;Name=CAL18834.1;Note=No significant database hits;gbkey=CDS;product=putative membrane protein;protein_id=CAL18834.1;transl_table=11
AL590842.1	EMBL	sequence_feature	162638	162706	.	+	.	ID=id342;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	163209	163577	.	+	.	ID=gene150;Name=YPO0149;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0149
AL590842.1	EMBL	CDS	163209	163577	.	+	0	ID=cds144;Parent=gene150;Dbxref=InterPro:IPR019684,UniProtKB/TrEMBL:Q0WKF3,NCBI_GP:CAL18835.1;Name=CAL18835.1;Note=Doubtful CDS%2C no significant database hits;gbkey=CDS;product=putative membrane protein;protein_id=CAL18835.1;transl_table=11
AL590842.1	EMBL	sequence_feature	163983	165122	.	+	.	ID=id343;Note=Pfam match to entry PF00263 Bac_GSPproteins%2CBacterial type II secretion system protein%2C score 224.00%2CE-value 2.1e-63;gbkey=misc_feature;inference=protein motif:PF00263
AL590842.1	EMBL	gene	164004	165128	.	+	.	ID=gene151;Name=YPO0150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0150
AL590842.1	EMBL	CDS	164004	165128	.	+	0	ID=cds145;Parent=gene151;Dbxref=GOA:Q7CFW4,InterPro:IPR001775,InterPro:IPR004846,InterPro:IPR005644,InterPro:IPR013355,UniProtKB/TrEMBL:Q7CFW4,NCBI_GP:CAL18836.1;Name=CAL18836.1;Note=Similar to Haemophilus influenzae competence protein E precursor ComE or HI0435 SW:COME_HAEIN (P31772) (445 aa) fasta scores: E(): 0%2C 42.1%25 id in 387 aa%2C and to Escherichia coli protein transport protein hofQ precursor SW:HOFQ_ECOLI (P34749) (412 aa) fasta scores: E(): 0%2C 48.6%25 id in 381 aa. Note the differing N-terminal region and the low G+C content of the upstream DNA region.;gbkey=CDS;product=putative membrane transport protein;protein_id=CAL18836.1;transl_table=11
AL590842.1	EMBL	gene	165477	165998	.	+	.	ID=gene152;Name=aroK;gbkey=Gene;gene=aroK;gene_biotype=protein_coding;locus_tag=YPO0151
AL590842.1	EMBL	CDS	165477	165998	.	+	0	ID=cds146;Parent=gene152;Dbxref=GOA:Q8ZJF7,InterPro:IPR000623,InterPro:IPR023000,InterPro:IPR027417,NCBI_GP:CAL18837.1;Name=CAL18837.1;Note=Similar to Escherichia coli shikimate kinase I AroK SW:AROK_ECOLI (P24167) (172 aa) fasta scores: E(): 0%2C 95.3%25 id in 172 aa;gbkey=CDS;gene=aroK;product=shikimate kinase I;protein_id=CAL18837.1;transl_table=11
AL590842.1	EMBL	sequence_feature	165489	165986	.	+	.	ID=id344;Note=Pfam match to entry PF01202 SKI%2C Shikimate kinase%2Cscore 302.50%2C E-value 5.2e-87;gbkey=misc_feature;gene=aroK;inference=protein motif:PF01202
AL590842.1	EMBL	sequence_feature	165507	165530	.	+	.	ID=id345;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=aroK;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	165654	165731	.	+	.	ID=id346;Note=PS01128 Shikimate kinase signature.;gbkey=misc_feature;gene=aroK;inference=protein motif:ProSite:PS01128
AL590842.1	EMBL	gene	166055	167143	.	+	.	ID=gene153;Name=aroB;gbkey=Gene;gene=aroB;gene_biotype=protein_coding;locus_tag=YPO0152
AL590842.1	EMBL	CDS	166055	167143	.	+	0	ID=cds147;Parent=gene153;Dbxref=GOA:Q8ZJF6,InterPro:IPR016037,NCBI_GP:CAL18838.1;Name=CAL18838.1;Note=Similar to Escherichia coli 3-dehydroquinate synthase AroB SW:AROB_ECOLI (P07639) (362 aa) fasta scores: E(): 0%2C 81.4%25 id in 361 aa;gbkey=CDS;gene=aroB;product=3-dehydroquinate synthase;protein_id=CAL18838.1;transl_table=11
AL590842.1	EMBL	sequence_feature	166100	167128	.	+	.	ID=id347;Note=Pfam match to entry PF01761 DHQ_synthase%2C3-dehydroquinate synthase%2C score 668.40%2C E-value 3.6e-197;gbkey=misc_feature;gene=aroB;inference=protein motif:PF01761
AL590842.1	EMBL	gene	167397	168386	.	+	.	ID=gene154;Name=YPO0153;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0153
AL590842.1	EMBL	CDS	167397	168386	.	+	0	ID=cds148;Parent=gene154;Dbxref=InterPro:IPR007730,UniProtKB/TrEMBL:Q74Y26,NCBI_GP:CAL18839.1;Name=CAL18839.1;Note=Similar to Escherichia coli DamX protein an inhibitor of cell-division%2C mode of action unknown%2CSW:DAMX_ECOLI (P11557) (427 aa) fasta scores: E(): 8.5e-18%2C41.6%25 id in 361 aa;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL18839.1;transl_table=11
AL590842.1	EMBL	sequence_feature	167502	167570	.	+	.	ID=id348;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	168470	169285	.	+	.	ID=gene155;Name=dam;gbkey=Gene;gene=dam;gene_biotype=protein_coding;locus_tag=YPO0154
AL590842.1	EMBL	CDS	168470	169285	.	+	0	ID=cds149;Parent=gene155;Dbxref=GOA:Q7CFW3,InterPro:IPR002052,InterPro:IPR012263,InterPro:IPR012327,InterPro:IPR023095,InterPro:IPR029063,UniProtKB/TrEMBL:Q7CFW3,NCBI_GP:CAL18840.1;Name=CAL18840.1;Note=Similar to Serratia marcescens DNA adenine methylase Dam SW:DMA_SERMA (P45454) (270 aa) fasta scores: E(): 0%2C84.8%25 id in 270 aa%2C and to Yersinia pseudotuberculosis DNA adenine methylase Dam TR:AAG23175 (EMBL:AF274318) (271 aa) fasta scores: E(): 0%2C 100.0%25 id in 271 aa;gbkey=CDS;gene=dam;inference=similar to sequence:INSDC:AF274318;product=DNA adenine methylase;protein_id=CAL18840.1;transl_table=11
AL590842.1	EMBL	sequence_feature	168497	169228	.	+	.	ID=id349;Note=Pfam match to entry PF02086 MethyltransfD12%2C D12 class N6 adenine-specific DNA methyltransferase%2C score 339.30%2C E-value 4.2e-98;gbkey=misc_feature;gene=dam;inference=protein motif:PF02086
AL590842.1	EMBL	sequence_feature	169001	169021	.	+	.	ID=id350;Note=PS00092 N-6 Adenine-specific DNA methylases signature.;gbkey=misc_feature;gene=dam;inference=protein motif:ProSite:PS00092
AL590842.1	EMBL	gene	169588	170265	.	+	.	ID=gene156;Name=rpe;gbkey=Gene;gene=rpe;gene_biotype=protein_coding;locus_tag=YPO0155
AL590842.1	EMBL	CDS	169588	170265	.	+	0	ID=cds150;Parent=gene156;Dbxref=GOA:Q0WKE7,InterPro:IPR000056,InterPro:IPR011060,InterPro:IPR013785,InterPro:IPR026019,UniProtKB/TrEMBL:Q0WKE7,NCBI_GP:CAL18841.1;Name=CAL18841.1;Note=Similar to Escherichia coli ribulose-phosphate 3-epimerase Rpe SW:RPE_ECOLI (P32661) (225 aa) fasta scores: E(): 0%2C 88.6%25 id in 220 aa;gbkey=CDS;gene=rpe;product=ribulose-phosphate 3-epimerase;protein_id=CAL18841.1;transl_table=11
AL590842.1	EMBL	sequence_feature	169600	170205	.	+	.	ID=id351;Note=Pfam match to entry PF00834 Ribul_P_3_epim%2CRibulose-phosphate 3 epimerase family%2C score 476.40%2CE-value 2.3e-139;gbkey=misc_feature;gene=rpe;inference=protein motif:PF00834
AL590842.1	EMBL	sequence_feature	169684	169728	.	+	.	ID=id352;Note=PS01085 Ribulose-phosphate 3-epimerase family signature 1.;gbkey=misc_feature;gene=rpe;inference=protein motif:ProSite:PS01085
AL590842.1	EMBL	sequence_feature	169993	170061	.	+	.	ID=id353;Note=PS01086 Ribulose-phosphate 3-epimerase family signature 2.;gbkey=misc_feature;gene=rpe;inference=protein motif:ProSite:PS01086
AL590842.1	EMBL	gene	170258	170956	.	+	.	ID=gene157;Name=gph;gbkey=Gene;gene=gph;gene_biotype=protein_coding;locus_tag=YPO0156
AL590842.1	EMBL	CDS	170258	170956	.	+	0	ID=cds151;Parent=gene157;Dbxref=GOA:Q8ZJF3,InterPro:IPR006346,InterPro:IPR006439,InterPro:IPR023198,InterPro:IPR023214,NCBI_GP:CAL18842.1;Name=CAL18842.1;Note=Similar to Escherichia coli phosphoglycolate phosphatase Gph SW:GPH_ECOLI (P32662) (252 aa) fasta scores: E(): 0%2C 60.5%25 id in 248 aa;gbkey=CDS;gene=gph;product=phosphoglycolate phosphatase;protein_id=CAL18842.1;transl_table=11
AL590842.1	EMBL	sequence_feature	170276	170845	.	+	.	ID=id354;Note=Pfam match to entry PF00702 Hydrolase%2C haloacid dehalogenase-like hydrolase%2C score 178.70%2C E-value 9.5e-50;gbkey=misc_feature;gene=gph;inference=protein motif:PF00702
AL590842.1	EMBL	gene	170958	171998	.	+	.	ID=gene158;Name=trpS;gbkey=Gene;gene=trpS;gene_biotype=protein_coding;locus_tag=YPO0157
AL590842.1	EMBL	CDS	170958	171998	.	+	0	ID=cds152;Parent=gene158;Dbxref=GOA:Q8ZJF2,InterPro:IPR001412,InterPro:IPR002305,InterPro:IPR002306,InterPro:IPR014729,InterPro:IPR024109,PDB:3N9I,NCBI_GP:CAL18843.1;Name=CAL18843.1;Note=Similar to Escherichia coli tryptophanyl-tRNA synthetase TrpS SW:SYW_ECOLI (P00954) (334 aa) fasta scores: E(): 0%2C 85.2%25 id in 332 aa;gbkey=CDS;gene=trpS;product=tryptophanyl-tRNA synthetase;protein_id=CAL18843.1;transl_table=11
AL590842.1	EMBL	sequence_feature	171009	171677	.	+	.	ID=id355;Note=Pfam match to entry PF00579 tRNA-synt_1b%2C tRNA synthetases class I (W and Y)%2C score 351.80%2C E-value 7.5e-102;gbkey=misc_feature;gene=trpS;inference=protein motif:PF00579
AL590842.1	EMBL	sequence_feature	171027	171056	.	+	.	ID=id356;Note=PS00178 Aminoacyl-transfer RNA synthetases class-I signature.;gbkey=misc_feature;gene=trpS;inference=protein motif:ProSite:PS00178
AL590842.1	EMBL	repeat_region	172072	172158	.	+	.	ID=id357;Note=5 x 18bp repeats;gbkey=repeat_region
AL590842.1	EMBL	gene	172153	173565	.	-	.	ID=gene159;Name=cysG;gbkey=Gene;gene=cysG;gene_biotype=protein_coding;locus_tag=YPO0158
AL590842.1	EMBL	CDS	172153	173565	.	-	0	ID=cds153;Parent=gene159;Dbxref=GOA:Q74Y23,InterPro:IPR000878,InterPro:IPR003043,InterPro:IPR006366,InterPro:IPR006367,InterPro:IPR012409,InterPro:IPR014776,InterPro:IPR014777,InterPro:IPR016040,InterPro:IPR019478,NCBI_GP:CAL18844.1;Name=CAL18844.1;Note=Similar to Escherichia coli siroheme synthase involved in porphyrin biosynthesis%2C CysG SW:CYSG_ECOLI (P11098) (457 aa) fasta scores: E(): 0%2C 72.6%25 id in 456 aa;gbkey=CDS;gene=cysG;product=siroheme synthase;protein_id=CAL18844.1;transl_table=11
AL590842.1	EMBL	sequence_feature	172294	172926	.	-	.	ID=id358;Note=Pfam match to entry PF00590 TP_methylase%2CTetrapyrrole (Corrin/Porphyrin) Methylases.%2C score 315.40%2CE-value 6.5e-91;gbkey=misc_feature;gene=cysG;inference=protein motif:PF00590
AL590842.1	EMBL	sequence_feature	172588	172689	.	-	.	ID=id359;Note=PS00840 Uroporphyrin-III C-methyltransferase signature 2.;gbkey=misc_feature;gene=cysG;inference=protein motif:ProSite:PS00840
AL590842.1	EMBL	sequence_feature	172870	172914	.	-	.	ID=id360;Note=PS00839 Uroporphyrin-III C-methyltransferase signature 1.;gbkey=misc_feature;gene=cysG;inference=protein motif:ProSite:PS00839
AL590842.1	EMBL	gene	173653	174459	.	-	.	ID=gene160;Name=nirC;gbkey=Gene;gene=nirC;gene_biotype=protein_coding;locus_tag=YPO0159
AL590842.1	EMBL	CDS	173653	174459	.	-	0	ID=cds154;Parent=gene160;Dbxref=GOA:Q7CFW2,InterPro:IPR000292,InterPro:IPR023271,InterPro:IPR024002,UniProtKB/TrEMBL:Q7CFW2,NCBI_GP:CAL18845.1;Name=CAL18845.1;Note=Similar to Escherichia coli putative nitrite transporter NirC SW:NIRC_ECOLI (P11097) (268 aa) fasta scores: E(): 0%2C 82.7%25 id in 266 aa;gbkey=CDS;gene=nirC;inference=protein motif:TMHMM:2.0;product=putative nitrite transporter;protein_id=CAL18845.1;transl_table=11
AL590842.1	EMBL	sequence_feature	173698	174459	.	-	.	ID=id361;Note=Pfam match to entry PF01226 Form_Nir_trans%2CFormate/nitrite transporter%2C score 425.90%2C E-value 3.6e-124;gbkey=misc_feature;gene=nirC;inference=protein motif:PF01226
AL590842.1	EMBL	sequence_feature	173716	173781	.	-	.	ID=id362;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=nirC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	173842	173907	.	-	.	ID=id363;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=nirC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	173944	174009	.	-	.	ID=id364;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=nirC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	173959	173991	.	-	.	ID=id365;Note=PS01006 Formate and nitrite transporters signature 2.;gbkey=misc_feature;gene=nirC;inference=protein motif:ProSite:PS01006
AL590842.1	EMBL	sequence_feature	174088	174153	.	-	.	ID=id366;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=nirC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	174214	174243	.	-	.	ID=id367;Note=PS01005 Formate and nitrite transporters signature 1.;gbkey=misc_feature;gene=nirC;inference=protein motif:ProSite:PS01005
AL590842.1	EMBL	sequence_feature	174217	174282	.	-	.	ID=id368;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=nirC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	174313	174378	.	-	.	ID=id369;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=nirC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	174662	174988	.	-	.	ID=gene161;Name=nirD;gbkey=Gene;gene=nirD;gene_biotype=protein_coding;locus_tag=YPO0160
AL590842.1	EMBL	CDS	174662	174988	.	-	0	ID=cds155;Parent=gene161;Dbxref=GOA:Q7CFW1,InterPro:IPR012748,InterPro:IPR017881,InterPro:IPR017941,UniProtKB/TrEMBL:Q7CFW1,NCBI_GP:CAL18846.1;Name=CAL18846.1;Note=Similar to Escherichia coli nitrite reductase NirD SW:NIRD_ECOLI (P23675) (108 aa) fasta scores: E(): 1.6e-32%2C69.8%25 id in 106 aa;gbkey=CDS;gene=nirD;product=nitrite reductase [NAD;protein_id=CAL18846.1;transl_table=11
AL590842.1	EMBL	gene	174985	177531	.	-	.	ID=gene162;Name=nirB;gbkey=Gene;gene=nirB;gene_biotype=protein_coding;locus_tag=YPO0161
AL590842.1	EMBL	CDS	174985	177531	.	-	0	ID=cds156;Parent=gene162;Dbxref=GOA:Q7CFW0,InterPro:IPR001327,InterPro:IPR005117,InterPro:IPR006066,InterPro:IPR006067,InterPro:IPR007419,InterPro:IPR012744,InterPro:IPR013027,InterPro:IPR017121,InterPro:IPR023753,UniProtKB/TrEMBL:Q7CFW0,NCBI_GP:CAL18847.1;Name=CAL18847.1;Note=Similar to Escherichia coli nitrite reductase NirB SW:NIRB_ECOLI (P08201) (847 aa) fasta scores: E(): 0%2C 82.7%25 id in 849 aa;gbkey=CDS;gene=nirB;product=nitrite reductase;protein_id=CAL18847.1;transl_table=11
AL590842.1	EMBL	sequence_feature	175435	175629	.	-	.	ID=id370;Note=Pfam match to entry PF01077 NIR_SIR%2C Nitrite and sulphite reductase 4Fe-4S domain%2C score 97.40%2C E-value 2.8e-25;gbkey=misc_feature;gene=nirB;inference=protein motif:PF01077
AL590842.1	EMBL	sequence_feature	175450	175500	.	-	.	ID=id371;Note=PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site.;gbkey=misc_feature;gene=nirB;inference=protein motif:ProSite:PS00365
AL590842.1	EMBL	sequence_feature	175648	175683	.	-	.	ID=id372;Note=PS00136 Serine proteases%2C subtilase family%2C aspartic acid active site.;gbkey=misc_feature;gene=nirB;inference=protein motif:ProSite:PS00136
AL590842.1	EMBL	sequence_feature	176686	177516	.	-	.	ID=id373;Note=Pfam match to entry PF00070 pyr_redox%2C Pyridine nucleotide-disulphide oxidoreductase%2C score 259.00%2C E-value 9.6e-76;gbkey=misc_feature;gene=nirB;inference=protein motif:PF00070
AL590842.1	EMBL	gene	177841	179151	.	+	.	ID=gene163;Name=codA;gbkey=Gene;gene=codA;gene_biotype=protein_coding;locus_tag=YPO0162
AL590842.1	EMBL	CDS	177841	179151	.	+	0	ID=cds157;Parent=gene163;Dbxref=GOA:Q7CFV9,InterPro:IPR011059,InterPro:IPR013108,UniProtKB/TrEMBL:Q7CFV9,NCBI_GP:CAL18848.1;Name=CAL18848.1;Note=Similar to Escherichia coli cytosine deaminase CodA SW:CODA_ECOLI (P25524) (426 aa) fasta scores: E(): 0%2C 80.5%25 id in 425 aa;gbkey=CDS;gene=codA;product=cytosine deaminase;protein_id=CAL18848.1;transl_table=11
AL590842.1	EMBL	gene	179236	180420	.	-	.	ID=gene164;Name=YPO0163;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0163
AL590842.1	EMBL	CDS	179236	180420	.	-	0	ID=cds158;Parent=gene164;Dbxref=GOA:Q8ZJE6,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,InterPro:IPR023528,NCBI_GP:CAL18849.1;Name=CAL18849.1;Note=Similar to Escherichia coli hypothetical 43.2 kDa protein in ppiA-nirB intergenic region YhfC SW:YHFC_ECOLI (P21229) (393 aa) fasta scores: E(): 0%2C 74.8%25 id in 393 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=conserved integral membrane protein;protein_id=CAL18849.1;transl_table=11
AL590842.1	EMBL	sequence_feature	179272	179337	.	-	.	ID=id374;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	179353	179418	.	-	.	ID=id375;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	179455	179520	.	-	.	ID=id376;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	179551	179601	.	-	.	ID=id377;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	179623	179688	.	-	.	ID=id378;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	179734	179799	.	-	.	ID=id379;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	179875	179940	.	-	.	ID=id380;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	179953	180018	.	-	.	ID=id381;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	180058	180114	.	-	.	ID=id382;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	180127	180192	.	-	.	ID=id383;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	180220	180285	.	-	.	ID=id384;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	180316	180381	.	-	.	ID=id385;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	180906	182966	.	+	.	ID=gene165;Name=YPO0164;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0164
AL590842.1	EMBL	CDS	180906	182966	.	+	0	ID=cds159;Parent=gene165;Dbxref=GOA:Q7CFV8,InterPro:IPR000531,InterPro:IPR010100,InterPro:IPR012910,UniProtKB/TrEMBL:Q7CFV8,NCBI_GP:CAL18850.1;Name=CAL18850.1;Note=Similar to Pseudomonas stutzeri outer membrane protein NosA TR:Q00620 (EMBL:M60717) (683 aa) fasta scores: E(): 0%2C 56.9%25 id in 640 aa and to Yersinia enterocolitica hemin receptor precursor HemR SW:HEMR_YEREN (P31499) (687 aa) fasta scores: E(): 1.8e-06%2C 22.7%25 id in 677 aa;gbkey=CDS;inference=similar to sequence:INSDC:M60717;product=putative membrane receptor protein;protein_id=CAL18850.1;transl_table=11
AL590842.1	EMBL	sequence_feature	180942	181010	.	+	.	ID=id386;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	182607	182963	.	+	.	ID=id387;Note=Pfam match to entry PF00593 TonB_boxC%2C TonB dependent receptor C-terminal region%2C score 80.80%2C E-value 4.3e-21;gbkey=misc_feature;inference=protein motif:PF00593
AL590842.1	EMBL	gene	183067	184053	.	-	.	ID=gene166;Name=YPO0165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0165
AL590842.1	EMBL	CDS	183067	184053	.	-	0	ID=cds160;Parent=gene166;Dbxref=GOA:Q7CFV7,InterPro:IPR000843,InterPro:IPR010982,InterPro:IPR028082,UniProtKB/TrEMBL:Q7CFV7,NCBI_GP:CAL18851.1;Name=CAL18851.1;Note=Similar to Vibrio cholerae transcriptional regulator%2C LacI family VC1286 TR:Q9KSH0 (EMBL:AE004208) (340 aa) fasta scores: E(): 0%2C 47.4%25 id in 331 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004208;product=LacI-family transcriptional regulator;protein_id=CAL18851.1;transl_table=11
AL590842.1	EMBL	sequence_feature	183163	183882	.	-	.	ID=id388;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 121.10%2C E-value 2.1e-32;gbkey=misc_feature;inference=protein motif:PF00532
AL590842.1	EMBL	sequence_feature	183973	184053	.	-	.	ID=id389;Note=Pfam match to entry PF00356 lacI%2C Bacterial regulatory proteins%2C lacI family%2C score 41.50%2C E-value 2.9e-10;gbkey=misc_feature;inference=protein motif:PF00356
AL590842.1	EMBL	sequence_feature	183985	184050	.	-	.	ID=id390;Note=Predicted helix-turn-helix motif with score 2027 (+6.09 SD) at aa 2-23%2C sequence VTLEDVAVLAGVSRATVSRVVN;gbkey=misc_feature
AL590842.1	EMBL	sequence_feature	183988	184044	.	-	.	ID=id391;Note=PS00356 Bacterial regulatory proteins%2C lacI family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00356
AL590842.1	EMBL	gene	184302	185615	.	-	.	ID=gene167;Name=YPO0166;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0166
AL590842.1	EMBL	CDS	184302	185615	.	-	0	ID=cds161;Parent=gene167;Dbxref=GOA:Q7CFV6,InterPro:IPR001088,InterPro:IPR015955,InterPro:IPR016040,InterPro:IPR019802,InterPro:IPR022616,UniProtKB/TrEMBL:Q7CFV6,NCBI_GP:CAL18852.1;Name=CAL18852.1;Note=Similar to Escherichia coli 6-phospho-beta-glucosidase CelF SW:CELF_ECOLI (P17411) (449 aa) fasta scores: E(): 0%2C 43.2%25 id in 440 aa and to Vibrio cholerae 6-phospho-beta-glucosidase VC1284 TR:Q9KSH2 (EMBL:AE004207) (440 aa) fasta scores: E(): 0%2C 55.9%25 id in 433 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004207;product=putative glycosyl hydrolase;protein_id=CAL18852.1;transl_table=11
AL590842.1	EMBL	sequence_feature	184386	185603	.	-	.	ID=id392;Note=Pfam match to entry PF02056 Glyco_hydro_4%2C Family 4 glycosyl hydrolase%2C score 434.90%2C E-value 7.2e-127;gbkey=misc_feature;inference=protein motif:PF02056
AL590842.1	EMBL	sequence_feature	185103	185195	.	-	.	ID=id393;Note=PS01324 Glycosyl hydrolases family 4 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01324
AL590842.1	EMBL	gene	186131	186700	.	+	.	ID=gene168;Name=ppiA;gbkey=Gene;gene=ppiA;gene_biotype=protein_coding;gene_synonym=rot,rotA;locus_tag=YPO0167
AL590842.1	EMBL	CDS	186131	186700	.	+	0	ID=cds162;Parent=gene168;Dbxref=GOA:Q0WKD5,InterPro:IPR002130,InterPro:IPR020892,InterPro:IPR029000,UniProtKB/TrEMBL:Q0WKD5,NCBI_GP:CAL18853.1;Name=CAL18853.1;Note=Similar to Escherichia coli peptidyl-prolyl cis-trans isomerase A precursor PpiA SW:PPIA_ECOLI (P20752) (190 aa) fasta scores: E(): 0%2C 79.5%25 id in 190 aa;gbkey=CDS;gene=ppiA;product=peptidyl-prolyl cis-trans isomerase A;protein_id=CAL18853.1;transl_table=11
AL590842.1	EMBL	sequence_feature	186209	186697	.	+	.	ID=id394;Note=Pfam match to entry PF00160 pro_isomerase%2CCyclophilin type peptidyl-prolyl cis-trans isomerase%2C score 243.30%2C E-value 7.2e-70;gbkey=misc_feature;gene=ppiA;inference=protein motif:PF00160
AL590842.1	EMBL	sequence_feature	186320	186373	.	+	.	ID=id395;Note=PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.;gbkey=misc_feature;gene=ppiA;inference=protein motif:ProSite:PS00170
AL590842.1	EMBL	gene	187026	188567	.	+	.	ID=gene169;Name=YPO0168;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0168
AL590842.1	EMBL	CDS	187026	188567	.	+	0	ID=cds163;Parent=gene169;Dbxref=InterPro:IPR003593,InterPro:IPR008571,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CFV5,NCBI_GP:CAL18854.1;Name=CAL18854.1;Note=Similar to Escherichia coli hypothetical protein YjgR SW:YJGR_ECOLI (P39342) (500 aa) fasta scores: E(): 0%2C67.4%25 id in 513 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL18854.1;transl_table=11
AL590842.1	EMBL	sequence_feature	187137	187160	.	+	.	ID=id396;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	188810	189385	.	+	.	ID=gene170;Name=pabA;gbkey=Gene;gene=pabA;gene_biotype=protein_coding;locus_tag=YPO0169
AL590842.1	EMBL	CDS	188810	189385	.	+	0	ID=cds164;Parent=gene170;Dbxref=GOA:Q0WKD3,InterPro:IPR006221,InterPro:IPR017926,InterPro:IPR029062,UniProtKB/TrEMBL:Q0WKD3,NCBI_GP:CAL18855.1;Name=CAL18855.1;Note=Similar to para-aminobenzoate synthase glutamine amidotransferase components II from several including: Serratia marcescens SW:PABA_SERMA (P06195) (191 aa) fasta scores: E(): 0%2C 84.7%25 id in 189 aa and to Escherichia coli SW:PABA_ECOLI (P00903) (187 aa) fasta scores: E(): 0%2C 74.1%25 id in 189 aa;gbkey=CDS;gene=pabA;product=para-aminobenzoate synthase glutamine amidotransferase component II;protein_id=CAL18855.1;transl_table=11
AL590842.1	EMBL	sequence_feature	188816	189382	.	+	.	ID=id397;Note=Pfam match to entry PF00117 GATase%2C Glutamine amidotransferase class-I%2C score 284.60%2C E-value 1.2e-81;gbkey=misc_feature;gene=pabA;inference=protein motif:PF00117
AL590842.1	EMBL	sequence_feature	189029	189064	.	+	.	ID=id398;Note=PS00442 Glutamine amidotransferases class-I active site.;gbkey=misc_feature;gene=pabA;inference=protein motif:ProSite:PS00442
AL590842.1	EMBL	pseudogene	189518	190051	.	+	.	ID=gene171;Name=argD;gbkey=Gene;gene=argD;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO0170;part=1/2;pseudo=true
AL590842.1	EMBL	pseudogene	192005	192694	.	+	.	ID=gene171;Name=argD;gbkey=Gene;gene=argD;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO0170;part=2/2;pseudo=true
AL590842.1	EMBL	CDS	189518	190051	.	+	0	ID=cds165;Parent=gene171;Dbxref=PSEUDO:CAL18856.1;Note=Similar to Escherichia coli acetylornithine aminotransferase ArgD SW:ARGD_ECOLI (P18335) (405 aa) fasta scores: E(): 0%2C 77.2%25 id in 403 aa. This CDS is interrupted by a IS100 element.;gbkey=CDS;gene=argD;product=acetylornithine aminotransferase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	CDS	192005	192694	.	+	0	ID=cds165;Parent=gene171;Dbxref=PSEUDO:CAL18856.1;Note=Similar to Escherichia coli acetylornithine aminotransferase ArgD SW:ARGD_ECOLI (P18335) (405 aa) fasta scores: E(): 0%2C 77.2%25 id in 403 aa. This CDS is interrupted by a IS100 element.;gbkey=CDS;gene=argD;product=acetylornithine aminotransferase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	189611	190048	.	+	.	ID=id399;Note=Pfam match to entry PF00202 aminotran_3%2CAminotransferases class-III pyridoxal-phosphate%2C score 231.80%2C E-value 4.7e-80;gbkey=misc_feature;gene=argD;inference=protein motif:PF00202
AL590842.1	EMBL	sequence_feature	192005	192619	.	+	.	ID=id400;Note=Pfam match to entry PF00202 aminotran_3%2CAminotransferases class-III pyridoxal-phosphate%2C score 306.00%2C E-value 6.9e-106;gbkey=misc_feature;gene=argD;inference=protein motif:PF00202
AL590842.1	EMBL	sequence_feature	192140	192253	.	+	.	ID=id401;Note=PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.;gbkey=misc_feature;gene=argD;inference=protein motif:ProSite:PS00600
AL590842.1	EMBL	repeat_region	190051	192004	.	+	.	ID=id402;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	190051	190078	.	+	.	ID=id403;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	190137	191159	.	+	.	ID=gene172;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO0171
AL590842.1	EMBL	CDS	190137	191159	.	+	0	ID=cds166;Parent=gene172;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL18857.1;Name=CAL18857.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL18857.1;transl_table=11
AL590842.1	EMBL	sequence_feature	190161	190244	.	+	.	ID=id404;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	sequence_feature	190188	190253	.	+	.	ID=id405;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	190482	191015	.	+	.	ID=id406;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	gene	191156	191938	.	+	.	ID=gene173;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO0172
AL590842.1	EMBL	CDS	191156	191938	.	+	0	ID=cds167;Parent=gene173;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL18858.1;Name=CAL18858.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL18858.1;transl_table=11
AL590842.1	EMBL	sequence_feature	191324	191863	.	+	.	ID=id407;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	191483	191506	.	+	.	ID=id408;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	INVERTED	191977	192004	.	-	.	ID=id409;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	192920	195040	.	-	.	ID=gene174;Name=YPO0174;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0174
AL590842.1	EMBL	CDS	192920	195040	.	-	0	ID=cds168;Parent=gene174;Dbxref=InterPro:IPR010020,UniProtKB/TrEMBL:Q7CFV4,NCBI_GP:CAL18859.1;Name=CAL18859.1;Note=Similar to Escherichia coli hypothetical 79.5 kDa protein in crp-argD intergenic region YhfK SW:YHFK_ECOLI (P45537) (696 aa) fasta scores: E(): 0%2C 56.4%25 id in 707 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL18859.1;transl_table=11
AL590842.1	EMBL	sequence_feature	193520	193576	.	-	.	ID=id410;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	193607	193663	.	-	.	ID=id411;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	193685	193750	.	-	.	ID=id412;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	193862	193927	.	-	.	ID=id413;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	194579	194644	.	-	.	ID=id414;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	194660	194716	.	-	.	ID=id415;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	194732	194797	.	-	.	ID=id416;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	194945	195001	.	-	.	ID=id417;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	195126	195758	.	-	.	ID=gene175;Name=cap;gbkey=Gene;gene=cap;gene_biotype=protein_coding;gene_synonym=crp,csm;locus_tag=YPO0175
AL590842.1	EMBL	CDS	195126	195758	.	-	0	ID=cds169;Parent=gene175;Dbxref=GOA:Q7CFV3,InterPro:IPR000595,InterPro:IPR001808,InterPro:IPR011991,InterPro:IPR012318,InterPro:IPR014710,InterPro:IPR018335,InterPro:IPR018488,InterPro:IPR018490,UniProtKB/TrEMBL:Q7CFV3,NCBI_GP:CAL18860.1;Name=CAL18860.1;Note=Similar to Escherichia coli and Shigella flexneri catabolite gene activator Crp SW:CRP_ECOLI (P03020) (210 aa) fasta scores: E(): 0%2C 98.6%25 id in 210 aa;gbkey=CDS;gene=cap;product=cAMP-regulatory protein;protein_id=CAL18860.1;transl_table=11
AL590842.1	EMBL	sequence_feature	195168	195263	.	-	.	ID=id418;Note=Pfam match to entry PF00325 crp%2C Bacterial regulatory proteins%2C crp family%2C score 59.30%2C E-value 3.7e-18;gbkey=misc_feature;gene=cap;inference=protein motif:PF00325
AL590842.1	EMBL	sequence_feature	195186	195257	.	-	.	ID=id419;Note=PS00042 Bacterial regulatory proteins%2C crp family signature.;gbkey=misc_feature;gene=cap;inference=protein motif:ProSite:PS00042
AL590842.1	EMBL	sequence_feature	195192	195257	.	-	.	ID=id420;Note=Predicted helix-turn-helix motif with score 2127 (+6.43 SD) at aa 168-189%2C sequence ITRQEIGQIVGCSRETVGRILK;gbkey=misc_feature;gene=cap
AL590842.1	EMBL	sequence_feature	195423	195707	.	-	.	ID=id421;Note=Pfam match to entry PF00027 cNMP_binding%2C Cyclic nucleotide-binding domain%2C score 122.70%2C E-value 7e-33;gbkey=misc_feature;gene=cap;inference=protein motif:PF00027
AL590842.1	EMBL	sequence_feature	195492	195548	.	-	.	ID=id422;Note=PS00889 Cyclic nucleotide-binding domain signature 2.;gbkey=misc_feature;gene=cap;inference=protein motif:ProSite:PS00889
AL590842.1	EMBL	sequence_feature	195621	195671	.	-	.	ID=id423;Note=PS00888 Cyclic nucleotide-binding domain signature 1.;gbkey=misc_feature;gene=cap;inference=protein motif:ProSite:PS00888
AL590842.1	EMBL	gene	196094	196501	.	+	.	ID=gene176;Name=YPO0176;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0176
AL590842.1	EMBL	CDS	196094	196501	.	+	0	ID=cds170;Parent=gene176;Dbxref=GOA:Q7CFV2,InterPro:IPR003718,InterPro:IPR015946,UniProtKB/TrEMBL:Q7CFV2,NCBI_GP:CAL18861.1;Name=CAL18861.1;Note=Similar to Escherichia coli hypothetical protein YhfA SW:YHFA_ECOLI (P24246) (134 aa) fasta scores: E(): 0%2C86.3%25 id in 131 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL18861.1;transl_table=11
AL590842.1	EMBL	gene	196573	197004	.	+	.	ID=gene177;Name=YPO0177;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0177
AL590842.1	EMBL	CDS	196573	197004	.	+	0	ID=cds171;Parent=gene177;Dbxref=InterPro:IPR010665,UniProtKB/TrEMBL:Q7CFV1,NCBI_GP:CAL18862.1;Name=CAL18862.1;Note=No significant database hits. CDS DNA has a low G+C content (34%25).;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL18862.1;transl_table=11
AL590842.1	EMBL	sequence_feature	196633	196701	.	+	.	ID=id424;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	196744	196812	.	+	.	ID=id425;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	196849	196908	.	+	.	ID=id426;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	197182	198051	.	-	.	ID=gene178;Name=prk;gbkey=Gene;gene=prk;gene_biotype=protein_coding;locus_tag=YPO0178
AL590842.1	EMBL	CDS	197182	198051	.	-	0	ID=cds172;Parent=gene178;Dbxref=GOA:Q0WKC6,InterPro:IPR006082,InterPro:IPR006083,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WKC6,NCBI_GP:CAL18863.1;Name=CAL18863.1;Note=Similar to Rhodobacter sphaeroides phosphoribulokinase 1 PrkA SW:KPP1_RHOSH (P12033) (290 aa) fasta scores: E(): 0%2C 49.3%25 id in 290 aa and to Escherichia coli probable phosphoribulokinase PrkB SW:KPPR_ECOLI (P37307) (289 aa) fasta scores: E(): 0%2C 86.5%25 id in 288 aa;gbkey=CDS;gene=prk;product=phosphoribulokinase 1;protein_id=CAL18863.1;transl_table=11
AL590842.1	EMBL	sequence_feature	197233	198033	.	-	.	ID=id427;Note=Pfam match to entry PF00485 PRK%2CPhosphoribulokinase%2C score 454.10%2C E-value 1.2e-132;gbkey=misc_feature;gene=prk;inference=protein motif:PF00485
AL590842.1	EMBL	sequence_feature	197521	197562	.	-	.	ID=id428;Note=PS00567 Phosphoribulokinase signature.;gbkey=misc_feature;gene=prk;inference=protein motif:ProSite:PS00567
AL590842.1	EMBL	gene	198200	198436	.	-	.	ID=gene179;Name=YPO0179;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0179
AL590842.1	EMBL	CDS	198200	198436	.	-	0	ID=cds173;Parent=gene179;Dbxref=InterPro:IPR010648,NCBI_GP:CAL18864.1;Name=CAL18864.1;Note=Similar to Escherichia coli hypothetical protein YheU SW:YHEU_ECOLI (P45536) (72 aa) fasta scores: E(): 4.3e-23%2C 76.1%25 id in 71 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL18864.1;transl_table=11
AL590842.1	EMBL	gene	198433	199413	.	-	.	ID=gene180;Name=YPO0180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0180
AL590842.1	EMBL	CDS	198433	199413	.	-	0	ID=cds174;Parent=gene180;Dbxref=GOA:Q7CFV0,InterPro:IPR000073,InterPro:IPR000952,InterPro:IPR012020,InterPro:IPR029058,UniProtKB/TrEMBL:Q7CFV0,NCBI_GP:CAL18865.1;Name=CAL18865.1;Note=Similar to many including: Vibrio cholerae hypothetical protein VC2610 TR:Q9KNX0 (EMBL:AE004327) (329 aa) fasta scores: E(): 0%2C 55.3%25 id in 320 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004327;product=conserved hypothetical protein;protein_id=CAL18865.1;transl_table=11
AL590842.1	EMBL	sequence_feature	198460	199149	.	-	.	ID=id429;Note=Pfam match to entry PF00561 abhydrolase%2C alpha/beta hydrolase fold%2C score 60.60%2C E-value 3.4e-14;gbkey=misc_feature;inference=protein motif:PF00561
AL590842.1	EMBL	sequence_feature	198613	198738	.	-	.	ID=id430;Note=PS01133 Uncharacterized protein family UPF0017 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01133
AL590842.1	EMBL	gene	199515	200117	.	+	.	ID=gene181;Name=YPO0181;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0181
AL590842.1	EMBL	CDS	199515	200117	.	+	0	ID=cds175;Parent=gene181;Dbxref=GOA:Q0WKC3,InterPro:IPR001123,UniProtKB/TrEMBL:Q0WKC3,NCBI_GP:CAL18866.1;Name=CAL18866.1;Note=Similar to many including: Bacillus sp sodium-dependent serotonin transporter TR:O82971 (EMBL:AB015670) (198 aa) fasta scores: E(): 2.4e-13%2C 34.5%25 id in 197 aa and to Pseudomonas aeruginosa hypothetical protein Pa2306 TR:AAG05694 (EMBL:AE004657) (205 aa) fasta scores: E(): 1.4e-21%2C 38.5%25 id in 195 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004657;product=putative ABC-transport protein;protein_id=CAL18866.1;transl_table=11
AL590842.1	EMBL	sequence_feature	199527	199595	.	+	.	ID=id431;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	199632	199700	.	+	.	ID=id432;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	199710	199778	.	+	.	ID=id433;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	199866	199934	.	+	.	ID=id434;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	199947	200015	.	+	.	ID=id435;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	199956	200000	.	+	.	ID=id436;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	200052	200111	.	+	.	ID=id437;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	200320	201381	.	+	.	ID=gene182;Name=ssiA;gbkey=Gene;gene=ssiA;gene_biotype=protein_coding;gene_synonym=tauA;locus_tag=YPO0182
AL590842.1	EMBL	CDS	200320	201381	.	+	0	ID=cds176;Parent=gene182;Dbxref=GOA:Q7CFU9,InterPro:IPR001638,InterPro:IPR006311,InterPro:IPR007210,InterPro:IPR010068,UniProtKB/TrEMBL:Q7CFU9,NCBI_GP:CAL18867.1;Name=CAL18867.1;Note=Similar to Escherichia coli taurine-binding periplasmic protein precursor TauA SW:TAUA_ECOLI (Q47537) (320 aa) fasta scores: E(): 0%2C 74.1%25 id in 313 aa%2C and to Pseudomonas aeruginosa probable periplasmic taurine-binding protein precursor PA3938 TR:AAG07325 (EMBL:AE004811) (337 aa) fasta scores: E(): 0%2C 50.2%25 id in 329 aa;gbkey=CDS;gene=ssiA;inference=similar to sequence:INSDC:AE004811;product=putative taurine-binding periplasmic protein precursor;protein_id=CAL18867.1;transl_table=11
AL590842.1	EMBL	gene	201390	202157	.	+	.	ID=gene183;Name=ssiB;gbkey=Gene;gene=ssiB;gene_biotype=protein_coding;gene_synonym=tauB;locus_tag=YPO0183
AL590842.1	EMBL	CDS	201390	202157	.	+	0	ID=cds177;Parent=gene183;Dbxref=GOA:Q8ZJD0,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR015859,InterPro:IPR017871,InterPro:IPR027417,NCBI_GP:CAL18868.1;Name=CAL18868.1;Note=Similar to Escherichia coli taurine transport ATP-binding protein TauB SW:TAUB_ECOLI (Q47538) (255 aa) fasta scores: E(): 0%2C 68.1%25 id in 254 aa%2C and to Pseudomonas aeruginosa probable ATP-binding component of ABC taurine transporter PA3937 TR:AAG07324 (EMBL:AE004811) (263 aa) fasta scores: E(): 0%2C 50.2%25 id in 241 aa;gbkey=CDS;gene=ssiB;inference=similar to sequence:INSDC:AE004811;product=putative taurine transport ATP-binding protein;protein_id=CAL18868.1;transl_table=11
AL590842.1	EMBL	sequence_feature	201468	202004	.	+	.	ID=id438;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 207.20%2C E-value 2.4e-58;gbkey=misc_feature;gene=ssiB;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	201489	201512	.	+	.	ID=id439;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ssiB;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	201774	201818	.	+	.	ID=id440;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=ssiB;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	202154	203008	.	+	.	ID=gene184;Name=ssiC;gbkey=Gene;gene=ssiC;gene_biotype=protein_coding;gene_synonym=tauC;locus_tag=YPO0184
AL590842.1	EMBL	CDS	202154	203008	.	+	0	ID=cds178;Parent=gene184;Dbxref=GOA:Q7CFU7,InterPro:IPR000515,UniProtKB/TrEMBL:Q7CFU7,NCBI_GP:CAL18869.1;Name=CAL18869.1;Note=Similar to Escherichia coli taurine transport system permease protein TauC SW:TAUC_ECOLI (Q47539) (275 aa) fasta scores: E(): 0%2C 75.4%25 id in 264 aa%2C and to Pseudomonas aeruginosa probable permease of ABC taurine transporter PA3936 TR:AAG07323 (EMBL:AE004811) (272 aa) fasta scores: E(): 0%2C 58.8%25 id in 267 aa;gbkey=CDS;gene=ssiC;inference=similar to sequence:INSDC:AE004811;product=putative taurine transport system permease protein;protein_id=CAL18869.1;transl_table=11
AL590842.1	EMBL	sequence_feature	202250	202318	.	+	.	ID=id441;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=ssiC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	202433	202501	.	+	.	ID=id442;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=ssiC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	202535	202603	.	+	.	ID=id443;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=ssiC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	202616	202675	.	+	.	ID=id444;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=ssiC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	202670	202885	.	+	.	ID=id445;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 46.00%2C E-value 8.3e-10;gbkey=misc_feature;gene=ssiC;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	202673	202759	.	+	.	ID=id446;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;gene=ssiC;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	202736	202804	.	+	.	ID=id447;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=ssiC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	202886	202954	.	+	.	ID=id448;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=ssiC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	203005	203853	.	+	.	ID=gene185;Name=ssiD;gbkey=Gene;gene=ssiD;gene_biotype=protein_coding;gene_synonym=tauD;locus_tag=YPO0185
AL590842.1	EMBL	CDS	203005	203853	.	+	0	ID=cds179;Parent=gene185;Dbxref=GOA:Q0WKB9,InterPro:IPR003819,UniProtKB/TrEMBL:Q0WKB9,NCBI_GP:CAL18870.1;Name=CAL18870.1;Note=Similar to Escherichia coli alpha-ketoglutarate-dependent taurine dioxygenase TauD SW:TAUD_ECOLI (P37610) (282 aa) fasta scores: E(): 0%2C 76.1%25 id in 280 aa%2C and to Pseudomonas aeruginosa taurine dioxygenase TauD TR:AAG07322 (EMBL:AE004811) (277 aa) fasta scores: E(): 0%2C 60.6%25 id in 274 aa;gbkey=CDS;gene=ssiD;inference=similar to sequence:INSDC:AE004811;product=putative taurine dioxygenase;protein_id=CAL18870.1;transl_table=11
AL590842.1	EMBL	gene	203866	204846	.	-	.	ID=gene186;Name=YPO0186;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0186
AL590842.1	EMBL	CDS	203866	204846	.	-	0	ID=cds180;Parent=gene186;Dbxref=GOA:Q3V8F4,InterPro:IPR002201,UniProtKB/TrEMBL:Q3V8F4,NCBI_GP:CAL18871.1;Name=CAL18871.1;Note=Similar to Serratia marcescens putative heptosyl III transferase WaaQ TR:Q9X979 (EMBL:U52844) (337 aa) fasta scores: E(): 5.4e-13%2C 27.1%25 id in 343 aa and to Salmonella typhimurium lipopolysaccharide core biosynthesis protein WaaQ TR:O68270 (EMBL:AF026386) (344 aa) fasta scores: E(): 5.1e-09%2C 26.2%25 id in 302 aa;gbkey=CDS;inference=similar to sequence:INSDC:U52844;product=putative sugar transferase;protein_id=CAL18871.1;transl_table=11
AL590842.1	EMBL	sequence_feature	203890	204612	.	-	.	ID=id449;Note=Pfam match to entry PF01075 Heptosyltranf%2CHeptosyltransferase%2C score -30.10%2C E-value 0.00075;gbkey=misc_feature;inference=protein motif:PF01075
AL590842.1	EMBL	gene	204939	205928	.	-	.	ID=gene187;Name=YPO0187;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0187
AL590842.1	EMBL	CDS	204939	205928	.	-	0	ID=cds181;Parent=gene187;Dbxref=GOA:Q7CFU6,InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:Q7CFU6,NCBI_GP:CAL18872.1;Name=CAL18872.1;Note=Similar to many transferases e.g. Klebsiella pneumoniae glycosyl transferase TR:Q9XC92 (EMBL:AF146532) (329 aa) fasta scores: E(): 2.1e-27%2C 29.4%25 id in 313 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF146532;product=putative glycosyl transferase;protein_id=CAL18872.1;transl_table=11
AL590842.1	EMBL	sequence_feature	205401	205910	.	-	.	ID=id450;Note=Pfam match to entry PF00535 Glycos_transf_2%2CGlycosyl transferases%2C score 66.70%2C E-value 5e-16;gbkey=misc_feature;inference=protein motif:PF00535
AL590842.1	EMBL	pseudogene	206063	207981	.	-	.	ID=gene188;Name=YPO0188;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO0188;pseudo=true
AL590842.1	EMBL	CDS	206063	207981	.	-	0	ID=cds182;Parent=gene188;Note=Similar to Escherichia coli O157:H7 putative ATP-binding component of a transport system YheS TR:AAG58460 (EMBL:AE005558) (637 aa) fasta scores: E(): 0%2C80.9%25 id in 634 aa Note this CDS contains a possible frameshift mutation following codon 177. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=similar to sequence:INSDC:AE005558;product=binding protein dependent ABC-transport protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	206477	206974	.	-	.	ID=id451;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 143.00%2C E-value 5.3e-39;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	206651	206695	.	-	.	ID=id452;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	206930	206953	.	-	.	ID=id453;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	207424	207903	.	-	.	ID=id454;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 45.40%2C E-value 1.2e-09;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	207490	207534	.	-	.	ID=id455;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	207859	207882	.	-	.	ID=id456;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	208229	208780	.	+	.	ID=gene189;Name=YPO0190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0190
AL590842.1	EMBL	CDS	208229	208780	.	+	0	ID=cds183;Parent=gene189;Dbxref=GOA:Q8ZJC5,InterPro:IPR003680,InterPro:IPR023947,InterPro:IPR029039,NCBI_GP:CAL18874.1;Name=CAL18874.1;Note=Similar to Escherichia coli putative NAD(P)H oxidoreductase%2C YheR SW:YHER_ECOLI (P45534) (184 aa) fasta scores: E(): 0%2C 75.3%25 id in 182 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL18874.1;transl_table=11
AL590842.1	EMBL	gene	208784	210592	.	+	.	ID=gene190;Name=kefB;gbkey=Gene;gene=kefB;gene_biotype=protein_coding;gene_synonym=trkB;locus_tag=YPO0191
AL590842.1	EMBL	CDS	208784	210592	.	+	0	ID=cds184;Parent=gene190;Dbxref=GOA:Q8ZJC4,InterPro:IPR003148,InterPro:IPR004771,InterPro:IPR006153,InterPro:IPR016040,InterPro:IPR020884,NCBI_GP:CAL18875.1;Name=CAL18875.1;Note=Similar to Escherichia coli glutathione-regulated potassium-efflux system protein KefB SW:KEFB_ECOLI (P45522) (601 aa) fasta scores: E(): 0%2C 77.9%25 id in 602 aa;gbkey=CDS;gene=kefB;inference=protein motif:TMHMM:2.0;product=probable potassium-efflux system protein;protein_id=CAL18875.1;transl_table=11
AL590842.1	EMBL	sequence_feature	208796	208855	.	+	.	ID=id457;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kefB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	208868	208936	.	+	.	ID=id458;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kefB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	208949	209002	.	+	.	ID=id459;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kefB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	209039	209107	.	+	.	ID=id460;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kefB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	209120	209188	.	+	.	ID=id461;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kefB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	209225	209293	.	+	.	ID=id462;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kefB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	209321	209386	.	+	.	ID=id463;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kefB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	209405	209473	.	+	.	ID=id464;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kefB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	209483	209551	.	+	.	ID=id465;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kefB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	209588	209656	.	+	.	ID=id466;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kefB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	209669	209737	.	+	.	ID=id467;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kefB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	209846	209914	.	+	.	ID=id468;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kefB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	209987	210349	.	+	.	ID=id469;Note=Pfam match to entry PF02254 KTN%2C KTN NAD-binding domain%2C score 52.30%2C E-value 1e-11;gbkey=misc_feature;gene=kefB;inference=protein motif:PF02254
AL590842.1	EMBL	gene	210608	210829	.	+	.	ID=gene191;Name=YPO0192;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0192
AL590842.1	EMBL	CDS	210608	210829	.	+	0	ID=cds185;Parent=gene191;Dbxref=InterPro:IPR012658,UniProtKB/TrEMBL:Q7CFU5,NCBI_GP:CAL18876.1;Name=CAL18876.1;Note=Similar to several hypothetical proteins e.g. Escherichia coli hypothetical protein YheV SW:YHEV_ECOLI (P56622) (66 aa) fasta scores: E(): 8e-17%2C 60.3%25 id in 63 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL18876.1;transl_table=11
AL590842.1	EMBL	gene	210924	211511	.	+	.	ID=gene192;Name=slyD;gbkey=Gene;gene=slyD;gene_biotype=protein_coding;locus_tag=YPO0193
AL590842.1	EMBL	CDS	210924	211511	.	+	0	ID=cds186;Parent=gene192;Dbxref=GOA:Q7CFU4,InterPro:IPR001179,InterPro:IPR023566,NCBI_GP:CAL18877.1;Name=CAL18877.1;Note=Similar to Escherichia coli peptidyl-prolyl cis-trans isomerase SlyD SW:SLYD_ECOLI (P30856) (196 aa) fasta scores: E(): 0%2C 83.4%25 id in 199 aa;gbkey=CDS;gene=slyD;product=peptidyl-prolyl cis-trans isomerase;protein_id=CAL18877.1;transl_table=11
AL590842.1	EMBL	sequence_feature	210954	211001	.	+	.	ID=id470;Note=PS00453 FKBP-type peptidyl-prolyl cis-trans isomerase signature 1.;gbkey=misc_feature;gene=slyD;inference=protein motif:ProSite:PS00453
AL590842.1	EMBL	sequence_feature	211032	211334	.	+	.	ID=id471;Note=Pfam match to entry PF00254 FKBP%2C FKBP-type peptidyl-prolyl cis-trans isomerases%2C score 35.50%2C E-value 1.3e-09;gbkey=misc_feature;gene=slyD;inference=protein motif:PF00254
AL590842.1	EMBL	sequence_feature	211044	211130	.	+	.	ID=id472;Note=PS00454 FKBP-type peptidyl-prolyl cis-trans isomerase signature 2.;gbkey=misc_feature;gene=slyD;inference=protein motif:ProSite:PS00454
AL590842.1	EMBL	sequence_feature	211467	211490	.	+	.	ID=id473;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=slyD;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	211732	211965	.	-	.	ID=gene193;Name=YPO0194;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0194
AL590842.1	EMBL	CDS	211732	211965	.	-	0	ID=cds187;Parent=gene193;Dbxref=InterPro:IPR007236,NCBI_GP:CAL18878.1;Name=CAL18878.1;Note=Similar to Escherichia coli SlyX protein of unknown function SW:SLYX_ECOLI (P30857) (72 aa) fasta scores: E(): 1.6e-15%2C 69.4%25 id in 72 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL18878.1;transl_table=11
AL590842.1	EMBL	gene	212265	213065	.	+	.	ID=gene194;Name=fkpA;gbkey=Gene;gene=fkpA;gene_biotype=protein_coding;locus_tag=YPO0195
AL590842.1	EMBL	CDS	212265	213065	.	+	0	ID=cds188;Parent=gene194;Dbxref=GOA:Q0WKB1,InterPro:IPR000774,InterPro:IPR001179,InterPro:IPR023566,UniProtKB/TrEMBL:Q0WKB1,NCBI_GP:CAL18879.1;Name=CAL18879.1;Note=Similar to Escherichia coli FkbP-type peptidyl-prolyl cis-trans isomerase SW:FKBA_ECOLI (P45523) (270 aa) fasta scores: E(): 0%2C 76.0%25 id in 267 aa;gbkey=CDS;gene=fkpA;product=peptidyl-prolyl cis-trans isomerase;protein_id=CAL18879.1;transl_table=11
AL590842.1	EMBL	sequence_feature	212331	212711	.	+	.	ID=id474;Note=Pfam match to entry PF01346 FKBP_N%2C Domain amino terminal to FKBP-type peptidyl-prolyl isomerase%2C score 176.10%2C E-value 5.7e-49;gbkey=misc_feature;gene=fkpA;inference=protein motif:PF01346
AL590842.1	EMBL	sequence_feature	212721	212993	.	+	.	ID=id475;Note=Pfam match to entry PF00254 FKBP%2C FKBP-type peptidyl-prolyl cis-trans isomerases%2C score 155.00%2C E-value 7e-46;gbkey=misc_feature;gene=fkpA;inference=protein motif:PF00254
AL590842.1	EMBL	sequence_feature	212847	212933	.	+	.	ID=id476;Note=PS00454 FKBP-type peptidyl-prolyl cis-trans isomerase signature 2.;gbkey=misc_feature;gene=fkpA;inference=protein motif:ProSite:PS00454
AL590842.1	EMBL	gene	213307	214041	.	+	.	ID=gene195;Name=YPO0196;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0196
AL590842.1	EMBL	CDS	213307	214041	.	+	0	ID=cds189;Parent=gene195;Dbxref=GOA:Q7CFU3,InterPro:IPR013559,UniProtKB/TrEMBL:Q7CFU3,NCBI_GP:CAL18880.1;Name=CAL18880.1;Note=Similar to Escherichia coli hypothetical protein YheO SW:YHEO_ECOLI (P45533) (240 aa) fasta scores: E(): 0%2C86.7%25 id in 240 aa%2C and to Vibrio cholerae hypothetical protein VC0355 vc0355 TR:Q9KV03 (EMBL:AE004124) (240 aa) fasta scores: E(): 0%2C 66.2%25 id in 234 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004124;product=putative DNA-binding protein;protein_id=CAL18880.1;transl_table=11
AL590842.1	EMBL	sequence_feature	213937	214002	.	+	.	ID=id477;Note=Predicted helix-turn-helix motif with score 1342 (+3.76 SD) at aa 211-232%2C sequence DAINQVAERLNISKHTVYLYIR;gbkey=misc_feature
AL590842.1	EMBL	gene	214041	214436	.	+	.	ID=gene196;Name=YPO0197;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0197
AL590842.1	EMBL	CDS	214041	214436	.	+	0	ID=cds190;Parent=gene196;Dbxref=GOA:Q8ZJB8,InterPro:IPR003787,InterPro:IPR017463,InterPro:IPR027396,NCBI_GP:CAL18881.1;Name=CAL18881.1;Note=Similar to Escherichia coli hypothetical protein YheN SW:YHEN_ECOLI (P45532) (128 aa) fasta scores: E(): 0%2C73.4%25 id in 128 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL18881.1;transl_table=11
AL590842.1	EMBL	gene	214436	214801	.	+	.	ID=gene197;Name=YPO0198;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0198
AL590842.1	EMBL	CDS	214436	214801	.	+	0	ID=cds191;Parent=gene197;Dbxref=GOA:Q8ZJB7,InterPro:IPR003787,InterPro:IPR017462,InterPro:IPR027396,NCBI_GP:CAL18882.1;Name=CAL18882.1;Note=Similar to Escherichia coli hypothetical protein YheM SW:YHEM_ECOLI (P45531) (119 aa) fasta scores: E(): 7.4e-29%2C 59.3%25 id in 118 aa and to Chromatium vinosum hypothetical protein%2C possibly involved in the intracellular sulfur oxidation%2C DsrF SW:DSRF_CHRVI (O87897) (136 aa) fasta scores: E(): 1.1e-05%2C 31.5%25 id in 89 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL18882.1;transl_table=11
AL590842.1	EMBL	gene	214821	215108	.	+	.	ID=gene198;Name=YPO0199;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0199
AL590842.1	EMBL	CDS	214821	215108	.	+	0	ID=cds192;Parent=gene198;Dbxref=GOA:Q8ZJB6,InterPro:IPR007215,InterPro:IPR023526,InterPro:IPR027396,NCBI_GP:CAL18883.1;Name=CAL18883.1;Note=Similar to Escherichia coli hypothetical protein SW:YHEL_ECOLI (P45530) (95 aa) fasta scores: E(): 2.4e-16%2C50.5%25 id in 95 aa%2C and to Chromatium vinosum DsrH TR:O87898 (EMBL:U84760) (102 aa) fasta scores: E(): 7.2e-05%2C 33.7%25 id in 101 aa;gbkey=CDS;inference=similar to sequence:INSDC:U84760;product=conserved hypothetical protein;protein_id=CAL18883.1;transl_table=11
AL590842.1	EMBL	gene	215246	215620	.	+	.	ID=gene199;Name=rpsl;gbkey=Gene;gene=rpsl;gene_biotype=protein_coding;gene_synonym=strA;locus_tag=YPO0200
AL590842.1	EMBL	CDS	215246	215620	.	+	0	ID=cds193;Parent=gene199;Dbxref=GOA:Q8ZJB5,InterPro:IPR005679,InterPro:IPR006032,InterPro:IPR012340,NCBI_GP:CAL18884.1;Name=CAL18884.1;Note=Similar to Escherichia coli%2C and Salmonella typhimurium 30S ribosomal protein S12 RpsL SW:RS12_ECOLI (P02367) (123 aa) fasta scores: E(): 0%2C 95.9%25 id in 123 aa;gbkey=CDS;gene=rpsl;product=30S ribosomal protein S12;protein_id=CAL18884.1;transl_table=11
AL590842.1	EMBL	sequence_feature	215246	215614	.	+	.	ID=id478;Note=Pfam match to entry PF00164 Ribosomal_S12%2C Ribosomal protein S12%2C score 275.30%2C E-value 7.9e-79;gbkey=misc_feature;gene=rpsl;inference=protein motif:PF00164
AL590842.1	EMBL	sequence_feature	215372	215395	.	+	.	ID=id479;Note=PS00055 Ribosomal protein S12 signature.;gbkey=misc_feature;gene=rpsl;inference=protein motif:ProSite:PS00055
AL590842.1	EMBL	gene	215717	216187	.	+	.	ID=gene200;Name=rpsG;gbkey=Gene;gene=rpsG;gene_biotype=protein_coding;locus_tag=YPO0201
AL590842.1	EMBL	CDS	215717	216187	.	+	0	ID=cds194;Parent=gene200;Dbxref=GOA:Q8ZJB4,InterPro:IPR000235,InterPro:IPR005717,InterPro:IPR020606,InterPro:IPR023798,NCBI_GP:CAL18885.1;Name=CAL18885.1;Note=Similar to Salmonella typhimurium 30S ribosomal protein S7 RpsG SW:RS7_SALTY (P26230) (155 aa) fasta scores: E(): 0%2C 94.8%25 id in 155 aa;gbkey=CDS;gene=rpsG;product=30S ribosomal protein S7;protein_id=CAL18885.1;transl_table=11
AL590842.1	EMBL	sequence_feature	215720	216184	.	+	.	ID=id480;Note=Pfam match to entry PF00177 Ribosomal_S7%2C Ribosomal protein S7p/S5e%2C score 328.40%2C E-value 8e-95;gbkey=misc_feature;gene=rpsG;inference=protein motif:PF00177
AL590842.1	EMBL	sequence_feature	215774	215854	.	+	.	ID=id481;Note=PS00052 Ribosomal protein S7 signature.;gbkey=misc_feature;gene=rpsG;inference=protein motif:ProSite:PS00052
AL590842.1	EMBL	gene	216281	218389	.	+	.	ID=gene201;Name=far;gbkey=Gene;gene=far;gene_biotype=protein_coding;gene_synonym=fus,fusA;locus_tag=YPO0202
AL590842.1	EMBL	CDS	216281	218389	.	+	0	ID=cds195;Parent=gene201;Dbxref=GOA:Q8ZJB3,InterPro:IPR000640,InterPro:IPR000795,InterPro:IPR004161,InterPro:IPR004540,InterPro:IPR005225,InterPro:IPR005517,InterPro:IPR009000,InterPro:IPR009022,InterPro:IPR014721,InterPro:IPR020568,InterPro:IPR027417,NCBI_GP:CAL18886.1;Name=CAL18886.1;Note=Similar to Escherichia coli elongation factor G FusA SW:EFG_ECOLI (P02996) (703 aa) fasta scores: E(): 0%2C 86.9%25 id in 703 aa;gbkey=CDS;gene=far;product=elongation factor G;protein_id=CAL18886.1;transl_table=11
AL590842.1	EMBL	sequence_feature	216302	217759	.	+	.	ID=id482;Note=Pfam match to entry PF00009 GTP_EFTU%2C Elongation factor Tu family%2C score 516.00%2C E-value 2.6e-152;gbkey=misc_feature;gene=far;inference=protein motif:PF00009
AL590842.1	EMBL	sequence_feature	216329	216352	.	+	.	ID=id483;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=far;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	216431	216478	.	+	.	ID=id484;Note=PS00301 GTP-binding elongation factors signature.;gbkey=misc_feature;gene=far;inference=protein motif:ProSite:PS00301
AL590842.1	EMBL	sequence_feature	217838	218356	.	+	.	ID=id485;Note=Pfam match to entry PF00679 EFG_C%2C Elongation factor G C-terminus%2C score 380.60%2C E-value 1.6e-110;gbkey=misc_feature;gene=far;inference=protein motif:PF00679
AL590842.1	EMBL	gene	218462	219646	.	+	.	ID=gene202;Name=tufA;gbkey=Gene;gene=tufA;gene_biotype=protein_coding;gene_synonym=tufB;locus_tag=YPO0203
AL590842.1	EMBL	CDS	218462	219646	.	+	0	ID=cds196;Parent=gene202;Dbxref=GOA:Q8ZJB2,InterPro:IPR000795,InterPro:IPR004160,InterPro:IPR004161,InterPro:IPR004541,InterPro:IPR005225,InterPro:IPR009000,InterPro:IPR009001,InterPro:IPR027417,NCBI_GP:CAL18887.1;Name=CAL18887.1;Note=Similar to Escherichia coli elongation factor Tu SW:EFTU_ECOLI (P02990) (393 aa) fasta scores: E(): 0%2C 95.2%25 id in 393 aa;gbkey=CDS;gene=tufA;product=elongation factor Tu;protein_id=CAL18887.1;transl_table=11
AL590842.1	EMBL	sequence_feature	218489	219583	.	+	.	ID=id486;Note=Pfam match to entry PF00009 GTP_EFTU%2C Elongation factor Tu family%2C score 487.00%2C E-value 9.9e-144;gbkey=misc_feature;gene=tufA;inference=protein motif:PF00009
AL590842.1	EMBL	sequence_feature	218516	218539	.	+	.	ID=id487;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=tufA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	218612	218659	.	+	.	ID=id488;Note=PS00301 GTP-binding elongation factors signature.;gbkey=misc_feature;gene=tufA;inference=protein motif:ProSite:PS00301
AL590842.1	EMBL	repeat_region	219704	220415	.	+	.	ID=id489;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	219849	220307	.	+	.	ID=gene203;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO0204
AL590842.1	EMBL	CDS	219849	220307	.	+	0	ID=cds197;Parent=gene203;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL18888.1;Name=CAL18888.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Also identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL18888.1;transl_table=11
AL590842.1	EMBL	sequence_feature	219903	220214	.	+	.	ID=id490;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	220495	220689	.	+	.	ID=gene204;Name=bfd;gbkey=Gene;gene=bfd;gene_biotype=protein_coding;locus_tag=YPO0205
AL590842.1	EMBL	CDS	220495	220689	.	+	0	ID=cds198;Parent=gene204;Dbxref=InterPro:IPR007419,UniProtKB/TrEMBL:Q74XZ3,NCBI_GP:CAL18889.1;Name=CAL18889.1;Note=Similar to Serratia marcescens bacterioferritin-associated ferredoxin Bfd SW:BFD_SERMA (O68934) (64 aa) fasta scores: E(): 1.2e-19%2C 73.4%25 id in 64 aa%2C and to Salmonella typhimurium bacterioferritin-associated ferredoxin Bfd SW:BFD_SALTY (O68925) (64 aa) fasta scores: E(): 5.5e-16%2C 56.2%25 id in 64 aa;gbkey=CDS;gene=bfd;product=putative bacterioferritin-associated ferredoxin;protein_id=CAL18889.1;transl_table=11
AL590842.1	EMBL	gene	220768	221241	.	+	.	ID=gene205;Name=bfr;gbkey=Gene;gene=bfr;gene_biotype=protein_coding;locus_tag=YPO0206
AL590842.1	EMBL	CDS	220768	221241	.	+	0	ID=cds199;Parent=gene205;Dbxref=GOA:Q7CFU0,InterPro:IPR002024,InterPro:IPR008331,InterPro:IPR009040,InterPro:IPR009078,InterPro:IPR012347,UniProtKB/TrEMBL:Q7CFU0,NCBI_GP:CAL18890.1;Name=CAL18890.1;Note=Similar to Serratia marcescens bacterioferritin Bfr SW:BFR_SERMA (O68935) (159 aa) fasta scores: E(): 0%2C 89.6%25 id in 154 aa%2C and to Escherichia coli bacterioferritin Bfr SW:BFR_ECOLI (P11056) (158 aa) fasta scores: E(): 0%2C 79.6%25 id in 157 aa;gbkey=CDS;gene=bfr;product=bacterioferritin;protein_id=CAL18890.1;transl_table=11
AL590842.1	EMBL	sequence_feature	220768	221229	.	+	.	ID=id491;Note=Pfam match to entry PF01334 Bacteriofer%2CBacterioferritin%2C score 343.70%2C E-value 2e-99;gbkey=misc_feature;gene=bfr;inference=protein motif:PF01334
AL590842.1	EMBL	gene	221655	221966	.	+	.	ID=gene206;Name=nusE;gbkey=Gene;gene=nusE;gene_biotype=protein_coding;gene_synonym=rpsJ;locus_tag=YPO0209
AL590842.1	EMBL	CDS	221655	221966	.	+	0	ID=cds200;Parent=gene206;Dbxref=GOA:P67906,InterPro:IPR001848,InterPro:IPR018268,InterPro:IPR027486,NCBI_GP:CAL18891.1;Name=CAL18891.1;Note=Similar to Escherichia coli 30S ribosomal protein S10 RpsJ SW:RS10_ECOLI (P02364) (103 aa) fasta scores: E(): 0%2C 98.1%25 id in 103 aa;gbkey=CDS;gene=nusE;product=30S ribosomal protein S10;protein_id=CAL18891.1;transl_table=11
AL590842.1	EMBL	sequence_feature	221667	221954	.	+	.	ID=id492;Note=Pfam match to entry PF00338 Ribosomal_S10%2C Ribosomal protein S10p/S20e%2C score 210.60%2C E-value 2.4e-59;gbkey=misc_feature;gene=nusE;inference=protein motif:PF00338
AL590842.1	EMBL	sequence_feature	221739	221786	.	+	.	ID=id493;Note=PS00361 Ribosomal protein S10 signature.;gbkey=misc_feature;gene=nusE;inference=protein motif:ProSite:PS00361
AL590842.1	EMBL	gene	221999	222628	.	+	.	ID=gene207;Name=rplC;gbkey=Gene;gene=rplC;gene_biotype=protein_coding;locus_tag=YPO0210
AL590842.1	EMBL	CDS	221999	222628	.	+	0	ID=cds201;Parent=gene207;Dbxref=GOA:Q8ZJA9,InterPro:IPR000597,InterPro:IPR009000,InterPro:IPR019926,InterPro:IPR019927,NCBI_GP:CAL18892.1;Name=CAL18892.1;Note=Similar to Escherichia coli 50S ribosomal protein L3 RplC SW:RL3_ECOLI (P02386) (209 aa) fasta scores: E(): 0%2C93.8%25 id in 209 aa;gbkey=CDS;gene=rplC;product=50S ribosomal protein L3;protein_id=CAL18892.1;transl_table=11
AL590842.1	EMBL	sequence_feature	222020	222610	.	+	.	ID=id494;Note=Pfam match to entry PF00297 Ribosomal_L3%2C Ribosomal protein L3%2C score 345.90%2C E-value 4.5e-100;gbkey=misc_feature;gene=rplC;inference=protein motif:PF00297
AL590842.1	EMBL	sequence_feature	222299	222370	.	+	.	ID=id495;Note=PS00474 Ribosomal protein L3 signature.;gbkey=misc_feature;gene=rplC;inference=protein motif:ProSite:PS00474
AL590842.1	EMBL	gene	222645	223250	.	+	.	ID=gene208;Name=eryA;gbkey=Gene;gene=eryA;gene_biotype=protein_coding;gene_synonym=rplD;locus_tag=YPO0211
AL590842.1	EMBL	CDS	222645	223250	.	+	0	ID=cds202;Parent=gene208;Dbxref=GOA:P60730,InterPro:IPR002136,InterPro:IPR013005,InterPro:IPR023574,NCBI_GP:CAL18893.1;Name=CAL18893.1;Note=Similar to Escherichia coli 50S ribosomal protein L4 RplD SW:RL4_ECOLI (P02388) (201 aa) fasta scores: E(): 0%2C94.5%25 id in 201 aa and to Yersinia pseudotuberculosis 50S ribosomal protein L4 RplD SW:RL4_YERPS (P11253) (201 aa) fasta scores: E(): 0%2C 100.0%25 id in 201 aa;gbkey=CDS;gene=eryA;product=50S ribosomal protein L4;protein_id=CAL18893.1;transl_table=11
AL590842.1	EMBL	sequence_feature	222675	223241	.	+	.	ID=id496;Note=Pfam match to entry PF00573 Ribosomal_L4%2C Ribosomal protein L4/L1 family%2C score 199.40%2C E-value 5.4e-56;gbkey=misc_feature;gene=eryA;inference=protein motif:PF00573
AL590842.1	EMBL	gene	223247	223549	.	+	.	ID=gene209;Name=rplW;gbkey=Gene;gene=rplW;gene_biotype=protein_coding;locus_tag=YPO0212
AL590842.1	EMBL	CDS	223247	223549	.	+	0	ID=cds203;Parent=gene209;Dbxref=GOA:P69963,InterPro:IPR001014,InterPro:IPR012677,InterPro:IPR012678,InterPro:IPR013025,NCBI_GP:CAL18894.1;Name=CAL18894.1;Note=Similar to Escherichia coli 50S ribosomal protein L23 RplW SW:RL23_ECOLI (P02424) (100 aa) fasta scores: E(): 0%2C 92.0%25 id in 100 aa and to Yersinia pseudotuberculosis 50S ribosomal protein L23 RplW SW:RL23_YERPS (P11254) (100 aa) fasta scores: E(): 0%2C 100.0%25 id in 100 aa;gbkey=CDS;gene=rplW;product=50S ribosomal protein L23;protein_id=CAL18894.1;transl_table=11
AL590842.1	EMBL	sequence_feature	223247	223444	.	+	.	ID=id497;Note=PS00430 TonB-dependent receptor proteins signature 1.;gbkey=misc_feature;gene=rplW;inference=protein motif:ProSite:PS00430
AL590842.1	EMBL	sequence_feature	223268	223543	.	+	.	ID=id498;Note=Pfam match to entry PF00276 Ribosomal_L23%2C Ribosomal protein L23%2C score 147.60%2C E-value 1.1e-42;gbkey=misc_feature;gene=rplW;inference=protein motif:PF00276
AL590842.1	EMBL	sequence_feature	223487	223534	.	+	.	ID=id499;Note=PS00050 Ribosomal protein L23 signature.;gbkey=misc_feature;gene=rplW;inference=protein motif:ProSite:PS00050
AL590842.1	EMBL	gene	223566	224390	.	+	.	ID=gene210;Name=rplB;gbkey=Gene;gene=rplB;gene_biotype=protein_coding;locus_tag=YPO0213
AL590842.1	EMBL	CDS	223566	224390	.	+	0	ID=cds204;Parent=gene210;Dbxref=GOA:P60436,InterPro:IPR002171,InterPro:IPR005880,InterPro:IPR008991,InterPro:IPR012340,InterPro:IPR014722,InterPro:IPR014726,InterPro:IPR022666,InterPro:IPR022669,InterPro:IPR022671,NCBI_GP:CAL18895.1;Name=CAL18895.1;Note=Similar to Escherichia coli 50S ribosomal protein l2 RplB SW:RL2_ECOLI (P02387) (272 aa) fasta scores: E(): 0%2C96.0%25 id in 272 aa and identical to Yersinia pseudotuberculosis 50S ribosomal protein l2 RplB SW:RL2_YERPS (P11255) (274 aa) fasta scores: E(): 0%2C 100.0%25 id in 274 aa;gbkey=CDS;gene=rplB;product=50S ribosomal protein l2;protein_id=CAL18895.1;transl_table=11
AL590842.1	EMBL	sequence_feature	223689	224384	.	+	.	ID=id500;Note=Pfam match to entry PF00181 Ribosomal_L2%2C Ribosomal Proteins L2%2C score 475.80%2C E-value 3.5e-139;gbkey=misc_feature;gene=rplB;inference=protein motif:PF00181
AL590842.1	EMBL	sequence_feature	224217	224252	.	+	.	ID=id501;Note=PS00467 Ribosomal protein L2 signature.;gbkey=misc_feature;gene=rplB;inference=protein motif:ProSite:PS00467
AL590842.1	EMBL	gene	224405	224683	.	+	.	ID=gene211;Name=rpsS;gbkey=Gene;gene=rpsS;gene_biotype=protein_coding;locus_tag=YPO0214
AL590842.1	EMBL	CDS	224405	224683	.	+	0	ID=cds205;Parent=gene211;Dbxref=GOA:Q8ZJA8,InterPro:IPR002222,InterPro:IPR005732,InterPro:IPR020934,InterPro:IPR023575,NCBI_GP:CAL18896.1;Name=CAL18896.1;Note=Similar to Escherichia coli 30S ribosomal protein S19 RpsS SW:RS19_ECOLI (P02375) (91 aa) fasta scores: E(): 0%2C 95.6%25 id in 91 aa;gbkey=CDS;gene=rpsS;product=30S ribosomal protein S19;protein_id=CAL18896.1;transl_table=11
AL590842.1	EMBL	sequence_feature	224411	224653	.	+	.	ID=id502;Note=Pfam match to entry PF00203 Ribosomal_S19%2C Ribosomal protein S19%2C score 187.20%2C E-value 1e-53;gbkey=misc_feature;gene=rpsS;inference=protein motif:PF00203
AL590842.1	EMBL	sequence_feature	224561	224635	.	+	.	ID=id503;Note=PS00323 Ribosomal protein S19 signature.;gbkey=misc_feature;gene=rpsS;inference=protein motif:ProSite:PS00323
AL590842.1	EMBL	gene	224698	225030	.	+	.	ID=gene212;Name=eryB;gbkey=Gene;gene=eryB;gene_biotype=protein_coding;gene_synonym=rplV;locus_tag=YPO0215
AL590842.1	EMBL	CDS	224698	225030	.	+	0	ID=cds206;Parent=gene212;Dbxref=GOA:Q8ZJA7,InterPro:IPR001063,InterPro:IPR005727,InterPro:IPR018260,NCBI_GP:CAL18897.1;Name=CAL18897.1;Note=Similar to Escherichia coli 50S ribosomal protein L22 RplV SW:RL22_ECOLI (P02423) (110 aa) fasta scores: E(): 0%2C 97.3%25 id in 110 aa;gbkey=CDS;gene=eryB;product=50S ribosomal protein L22;protein_id=CAL18897.1;transl_table=11
AL590842.1	EMBL	sequence_feature	224710	225024	.	+	.	ID=id504;Note=Pfam match to entry PF00237 Ribosomal_L22%2C Ribosomal protein L22p/L17e%2C score 204.30%2C E-value 1.8e-57;gbkey=misc_feature;gene=eryB;inference=protein motif:PF00237
AL590842.1	EMBL	sequence_feature	224944	225018	.	+	.	ID=id505;Note=PS00464 Ribosomal protein L22 signature.;gbkey=misc_feature;gene=eryB;inference=protein motif:ProSite:PS00464
AL590842.1	EMBL	gene	225048	225746	.	+	.	ID=gene213;Name=rpsC;gbkey=Gene;gene=rpsC;gene_biotype=protein_coding;locus_tag=YPO0216
AL590842.1	EMBL	CDS	225048	225746	.	+	0	ID=cds207;Parent=gene213;Dbxref=GOA:Q8ZJA6,InterPro:IPR001351,InterPro:IPR004044,InterPro:IPR004087,InterPro:IPR005704,InterPro:IPR009019,InterPro:IPR015946,InterPro:IPR018280,NCBI_GP:CAL18898.1;Name=CAL18898.1;Note=Similar to Escherichia coli 30S ribosomal protein S3 RpsC SW:RS3_ECOLI (P02352) (232 aa) fasta scores: E(): 0%2C98.3%25 id in 232 aa;gbkey=CDS;gene=rpsC;product=30S ribosomal protein S3;protein_id=CAL18898.1;transl_table=11
AL590842.1	EMBL	sequence_feature	225048	225233	.	+	.	ID=id506;Note=Pfam match to entry PF00417 Ribosomal_S3_N%2CRibosomal protein S3%2C N-terminal domain.%2C score 103.10%2CE-value 4.6e-32;gbkey=misc_feature;gene=rpsC;inference=protein motif:PF00417
AL590842.1	EMBL	sequence_feature	225240	225383	.	+	.	ID=id507;Note=Pfam match to entry PF00013 KH-domain%2C KH domain%2Cscore 35.90%2C E-value 9.1e-07;gbkey=misc_feature;gene=rpsC;inference=protein motif:PF00013
AL590842.1	EMBL	sequence_feature	225402	225653	.	+	.	ID=id508;Note=Pfam match to entry PF00189 Ribosomal_S3_C%2CRibosomal protein S3%2C C-terminal domain.%2C score 189.40%2CE-value 2e-58;gbkey=misc_feature;gene=rpsC;inference=protein motif:PF00189
AL590842.1	EMBL	sequence_feature	225534	225638	.	+	.	ID=id509;Note=PS00548 Ribosomal protein S3 signature.;gbkey=misc_feature;gene=rpsC;inference=protein motif:ProSite:PS00548
AL590842.1	EMBL	gene	225759	226169	.	+	.	ID=gene214;Name=rplP;gbkey=Gene;gene=rplP;gene_biotype=protein_coding;locus_tag=YPO0217
AL590842.1	EMBL	CDS	225759	226169	.	+	0	ID=cds208;Parent=gene214;Dbxref=GOA:Q8ZJA5,InterPro:IPR000114,InterPro:IPR016180,InterPro:IPR020798,NCBI_GP:CAL18899.1;Name=CAL18899.1;Note=Similar to Escherichia coli 50S ribosomal protein L16 RplP SW:RL16_ECOLI (P02414) (136 aa) fasta scores: E(): 0%2C 91.9%25 id in 136 aa;gbkey=CDS;gene=rplP;product=50S ribosomal protein L16;protein_id=CAL18899.1;transl_table=11
AL590842.1	EMBL	sequence_feature	225759	226151	.	+	.	ID=id510;Note=Pfam match to entry PF00252 Ribosomal_L16%2C Ribosomal protein L16%2C score 314.50%2C E-value 4.5e-91;gbkey=misc_feature;gene=rplP;inference=protein motif:PF00252
AL590842.1	EMBL	sequence_feature	225930	225965	.	+	.	ID=id511;Note=PS00586 Ribosomal protein L16 signature 1.;gbkey=misc_feature;gene=rplP;inference=protein motif:ProSite:PS00586
AL590842.1	EMBL	sequence_feature	225999	226034	.	+	.	ID=id512;Note=PS00701 Ribosomal protein L16 signature 2.;gbkey=misc_feature;gene=rplP;inference=protein motif:ProSite:PS00701
AL590842.1	EMBL	gene	226169	226360	.	+	.	ID=gene215;Name=rpmC;gbkey=Gene;gene=rpmC;gene_biotype=protein_coding;locus_tag=YPO0218
AL590842.1	EMBL	CDS	226169	226360	.	+	0	ID=cds209;Parent=gene215;Dbxref=GOA:Q8ZJA4,InterPro:IPR001854,InterPro:IPR018254,NCBI_GP:CAL18900.1;Name=CAL18900.1;Note=Similar to Escherichia coli 50S ribosomal protein L29 RpmC SW:RL29_ECOLI (P02429) (63 aa) fasta scores: E(): 1.3e-20%2C 93.7%25 id in 63 aa;gbkey=CDS;gene=rpmC;product=50S ribosomal protein L29;protein_id=CAL18900.1;transl_table=11
AL590842.1	EMBL	sequence_feature	226175	226357	.	+	.	ID=id513;Note=Pfam match to entry PF00831 Ribosomal_L29%2C Ribosomal L29 protein%2C score 97.20%2C E-value 3.3e-25;gbkey=misc_feature;gene=rpmC;inference=protein motif:PF00831
AL590842.1	EMBL	sequence_feature	226283	226327	.	+	.	ID=id514;Note=PS00579 Ribosomal protein L29 signature.;gbkey=misc_feature;gene=rpmC;inference=protein motif:ProSite:PS00579
AL590842.1	EMBL	gene	226360	226614	.	+	.	ID=gene216;Name=neaA;gbkey=Gene;gene=neaA;gene_biotype=protein_coding;gene_synonym=rpsQ;locus_tag=YPO0219
AL590842.1	EMBL	CDS	226360	226614	.	+	0	ID=cds210;Parent=gene216;Dbxref=GOA:Q8ZJA3,InterPro:IPR000266,InterPro:IPR012340,InterPro:IPR019979,InterPro:IPR019984,NCBI_GP:CAL18901.1;Name=CAL18901.1;Note=Similar to Escherichia coli 30S ribosomal protein S17 RpsQ SW:RS17_ECOLI (P02373) (83 aa) fasta scores: E(): 0%2C 94.0%25 id in 83 aa;gbkey=CDS;gene=neaA;product=30S ribosomal protein S17;protein_id=CAL18901.1;transl_table=11
AL590842.1	EMBL	sequence_feature	226387	226593	.	+	.	ID=id515;Note=Pfam match to entry PF00366 Ribosomal_S17%2C Ribosomal protein S17%2C score 145.50%2C E-value 5e-42;gbkey=misc_feature;gene=neaA;inference=protein motif:PF00366
AL590842.1	EMBL	sequence_feature	226525	226563	.	+	.	ID=id516;Note=PS00056 Ribosomal protein S17 signature.;gbkey=misc_feature;gene=neaA;inference=protein motif:ProSite:PS00056
AL590842.1	EMBL	gene	226795	227166	.	+	.	ID=gene217;Name=rplN;gbkey=Gene;gene=rplN;gene_biotype=protein_coding;locus_tag=YPO0220
AL590842.1	EMBL	CDS	226795	227166	.	+	0	ID=cds211;Parent=gene217;Dbxref=GOA:Q7CFT7,InterPro:IPR000218,InterPro:IPR005745,InterPro:IPR019972,InterPro:IPR023571,NCBI_GP:CAL18902.1;Name=CAL18902.1;Note=Similar to Escherichia coli 50S ribosomal protein L14 RplN SW:RL14_ECOLI (P02411) (123 aa) fasta scores: E(): 0%2C 97.6%25 id in 123 aa;gbkey=CDS;gene=rplN;product=50S ribosomal protein L14;protein_id=CAL18902.1;transl_table=11
AL590842.1	EMBL	sequence_feature	226813	227163	.	+	.	ID=id517;Note=Pfam match to entry PF00238 Ribosomal_L14%2C Ribosomal protein L14p/L23e%2C score 251.30%2C E-value 1.4e-71;gbkey=misc_feature;gene=rplN;inference=protein motif:PF00238
AL590842.1	EMBL	sequence_feature	226972	227052	.	+	.	ID=id518;Note=PS00049 Ribosomal protein L14 signature.;gbkey=misc_feature;gene=rplN;inference=protein motif:ProSite:PS00049
AL590842.1	EMBL	gene	227177	227491	.	+	.	ID=gene218;Name=rplX;gbkey=Gene;gene=rplX;gene_biotype=protein_coding;locus_tag=YPO0221
AL590842.1	EMBL	CDS	227177	227491	.	+	0	ID=cds212;Parent=gene218;Dbxref=GOA:Q8ZJA1,InterPro:IPR003256,InterPro:IPR005824,InterPro:IPR005825,InterPro:IPR008991,InterPro:IPR014722,NCBI_GP:CAL18903.1;Name=CAL18903.1;Note=Similar to Escherichia coli 50S ribosomal protein L24 RplX SW:RL24_ECOLI (P02425) (103 aa) fasta scores: E(): 0%2C 96.1%25 id in 103 aa;gbkey=CDS;gene=rplX;product=50S ribosomal protein L24;protein_id=CAL18903.1;transl_table=11
AL590842.1	EMBL	sequence_feature	227189	227359	.	+	.	ID=id519;Note=Pfam match to entry PF00467 Ribosomal_L24%2C KOW motif%2C score 89.90%2C E-value 5.1e-23;gbkey=misc_feature;gene=rplX;inference=protein motif:PF00467
AL590842.1	EMBL	sequence_feature	227198	227251	.	+	.	ID=id520;Note=PS01108 Ribosomal protein L24 signature.;gbkey=misc_feature;gene=rplX;inference=protein motif:ProSite:PS01108
AL590842.1	EMBL	gene	227506	228045	.	+	.	ID=gene219;Name=rplE;gbkey=Gene;gene=rplE;gene_biotype=protein_coding;locus_tag=YPO0222
AL590842.1	EMBL	CDS	227506	228045	.	+	0	ID=cds213;Parent=gene219;Dbxref=GOA:Q8ZJA0,InterPro:IPR002132,InterPro:IPR020930,InterPro:IPR022803,NCBI_GP:CAL18904.1;Name=CAL18904.1;Note=Similar to Escherichia coli 50S ribosomal protein L5 RplE SW:RL5_ECOLI (P02389) (178 aa) fasta scores: E(): 0%2C95.5%25 id in 178 aa;gbkey=CDS;gene=rplE;product=50S ribosomal protein L5;protein_id=CAL18904.1;transl_table=11
AL590842.1	EMBL	sequence_feature	227575	227745	.	+	.	ID=id521;Note=Pfam match to entry PF00281 Ribosomal_L5%2C Ribosomal protein L5%2C score 120.60%2C E-value 2.9e-32;gbkey=misc_feature;gene=rplE;inference=protein motif:PF00281
AL590842.1	EMBL	sequence_feature	227755	228039	.	+	.	ID=id522;Note=Pfam match to entry PF00673 Ribosomal_L5_C%2Cribosomal L5P family C-terminus%2C score 206.60%2C E-value 3.7e-58;gbkey=misc_feature;gene=rplE;inference=protein motif:PF00673
AL590842.1	EMBL	gene	228059	228364	.	+	.	ID=gene220;Name=rpsN;gbkey=Gene;gene=rpsN;gene_biotype=protein_coding;locus_tag=YPO0222a
AL590842.1	EMBL	CDS	228059	228364	.	+	0	ID=cds214;Parent=gene220;Dbxref=GOA:Q8ZJ99,InterPro:IPR001209,InterPro:IPR018271,InterPro:IPR023036,NCBI_GP:CAL18905.1;Name=CAL18905.1;Note=Similar to Escherichia coli 30S ribosomal protein S14 RpsN SW:RS14_ECOLI (P02370) (100 aa) fasta scores: E(): 0%2C 89.0%25 id in 100 aa;gbkey=CDS;gene=rpsN;product=30S ribosomal protein S14;protein_id=CAL18905.1;transl_table=11
AL590842.1	EMBL	gene	228398	228790	.	+	.	ID=gene221;Name=rpsH;gbkey=Gene;gene=rpsH;gene_biotype=protein_coding;locus_tag=YPO0223
AL590842.1	EMBL	CDS	228398	228790	.	+	0	ID=cds215;Parent=gene221;Dbxref=GOA:Q8ZJ98,InterPro:IPR000630,NCBI_GP:CAL18906.1;Name=CAL18906.1;Note=Similar to Escherichia coli 30S ribosomal protein S8 RpsH SW:RS8_ECOLI (P02361) (129 aa) fasta scores: E(): 0%2C94.6%25 id in 129 aa;gbkey=CDS;gene=rpsH;product=30S ribosomal protein S8;protein_id=CAL18906.1;transl_table=11
AL590842.1	EMBL	sequence_feature	228410	228787	.	+	.	ID=id523;Note=Pfam match to entry PF00410 Ribosomal_S8%2C Ribosomal protein S8%2C score 252.10%2C E-value 2.4e-76;gbkey=misc_feature;gene=rpsH;inference=protein motif:PF00410
AL590842.1	EMBL	sequence_feature	228695	228748	.	+	.	ID=id524;Note=PS00053 Ribosomal protein S8 signature.;gbkey=misc_feature;gene=rpsH;inference=protein motif:ProSite:PS00053
AL590842.1	EMBL	gene	228805	229338	.	+	.	ID=gene222;Name=rplF;gbkey=Gene;gene=rplF;gene_biotype=protein_coding;locus_tag=YPO0224
AL590842.1	EMBL	CDS	228805	229338	.	+	0	ID=cds216;Parent=gene222;Dbxref=GOA:Q7CFT4,InterPro:IPR000702,InterPro:IPR002358,InterPro:IPR019906,InterPro:IPR020040,NCBI_GP:CAL18907.1;Name=CAL18907.1;Note=Similar to Escherichia coli 50S ribosomal protein L6 RplF SW:RL6_ECOLI (P02390) (176 aa) fasta scores: E(): 0%2C89.8%25 id in 176 aa;gbkey=CDS;gene=rplF;product=50S ribosomal protein L6;protein_id=CAL18907.1;transl_table=11
AL590842.1	EMBL	sequence_feature	228835	229335	.	+	.	ID=id525;Note=Pfam match to entry PF00347 Ribosomal_L6%2C Ribosomal protein L6%2C score 308.20%2C E-value 9.8e-89;gbkey=misc_feature;gene=rplF;inference=protein motif:PF00347
AL590842.1	EMBL	sequence_feature	229264	229290	.	+	.	ID=id526;Note=PS00525 Ribosomal protein L6 signature 1.;gbkey=misc_feature;gene=rplF;inference=protein motif:ProSite:PS00525
AL590842.1	EMBL	gene	229348	229701	.	+	.	ID=gene223;Name=rplR;gbkey=Gene;gene=rplR;gene_biotype=protein_coding;locus_tag=YPO0225
AL590842.1	EMBL	CDS	229348	229701	.	+	0	ID=cds217;Parent=gene223;Dbxref=GOA:Q8ZJ96,InterPro:IPR004389,InterPro:IPR005484,NCBI_GP:CAL18908.1;Name=CAL18908.1;Note=Similar to Escherichia coli 50S ribosomal protein L18 RplR SW:RL18_ECOLI (P02419) (117 aa) fasta scores: E(): 0%2C 92.3%25 id in 117 aa;gbkey=CDS;gene=rplR;product=50S ribosomal protein L18;protein_id=CAL18908.1;transl_table=11
AL590842.1	EMBL	sequence_feature	229348	229698	.	+	.	ID=id527;Note=Pfam match to entry PF00861 Ribosomal_L18p%2CRibosomal L18p/L5e family%2C score 183.00%2C E-value 4.8e-51;gbkey=misc_feature;gene=rplR;inference=protein motif:PF00861
AL590842.1	EMBL	sequence_feature	229555	229578	.	+	.	ID=id528;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=rplR;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	229716	230219	.	+	.	ID=gene224;Name=rpsE;gbkey=Gene;gene=rpsE;gene_biotype=protein_coding;locus_tag=YPO0226
AL590842.1	EMBL	CDS	229716	230219	.	+	0	ID=cds218;Parent=gene224;Dbxref=GOA:Q8ZJ95,InterPro:IPR000851,InterPro:IPR005324,InterPro:IPR005712,InterPro:IPR013810,InterPro:IPR014720,InterPro:IPR014721,InterPro:IPR018192,InterPro:IPR020568,NCBI_GP:CAL18909.1;Name=CAL18909.1;Note=Similar to Escherichia coli 30S ribosomal protein S5 RpsE SW:RS5_ECOLI (P02356) (166 aa) fasta scores: E(): 0%2C95.8%25 id in 166 aa;gbkey=CDS;gene=rpsE;product=30S ribosomal protein S5;protein_id=CAL18909.1;transl_table=11
AL590842.1	EMBL	sequence_feature	229758	230144	.	+	.	ID=id529;Note=Pfam match to entry PF00333 Ribosomal_S5%2C Ribosomal protein S5%2C score 259.00%2C E-value 6.4e-74;gbkey=misc_feature;gene=rpsE;inference=protein motif:PF00333
AL590842.1	EMBL	sequence_feature	229797	229895	.	+	.	ID=id530;Note=PS00585 Ribosomal protein S5 signature.;gbkey=misc_feature;gene=rpsE;inference=protein motif:ProSite:PS00585
AL590842.1	EMBL	gene	230222	230401	.	+	.	ID=gene225;Name=rpmD;gbkey=Gene;gene=rpmD;gene_biotype=protein_coding;locus_tag=YPO0227
AL590842.1	EMBL	CDS	230222	230401	.	+	0	ID=cds219;Parent=gene225;Dbxref=GOA:Q7CFT2,InterPro:IPR005996,InterPro:IPR016082,InterPro:IPR018038,NCBI_GP:CAL18910.1;Name=CAL18910.1;Note=Similar to Escherichia coli 50S ribosomal protein L30 RpmD SW:RL30_ECOLI (P02430) (58 aa) fasta scores: E(): 1.5e-22%2C 86.2%25 id in 58 aa;gbkey=CDS;gene=rpmD;product=50S ribosomal protein L30;protein_id=CAL18910.1;transl_table=11
AL590842.1	EMBL	sequence_feature	230228	230386	.	+	.	ID=id531;Note=Pfam match to entry PF00327 Ribosomal_L30%2C Ribosomal protein L30p/L7e%2C score 90.50%2C E-value 5.6e-26;gbkey=misc_feature;gene=rpmD;inference=protein motif:PF00327
AL590842.1	EMBL	sequence_feature	230288	230386	.	+	.	ID=id532;Note=PS00634 Ribosomal protein L30 signature.;gbkey=misc_feature;gene=rpmD;inference=protein motif:ProSite:PS00634
AL590842.1	EMBL	gene	230405	230839	.	+	.	ID=gene226;Name=rplO;gbkey=Gene;gene=rplO;gene_biotype=protein_coding;locus_tag=YPO0228
AL590842.1	EMBL	CDS	230405	230839	.	+	0	ID=cds220;Parent=gene226;Dbxref=GOA:Q8ZJ93,InterPro:IPR001196,InterPro:IPR005749,InterPro:IPR021131,NCBI_GP:CAL18911.1;Name=CAL18911.1;Note=Similar to Escherichia coli 50S ribosomal protein L15 RplO SW:RL15_ECOLI (P02413) (144 aa) fasta scores: E(): 0%2C 85.4%25 id in 144 aa;gbkey=CDS;gene=rplO;product=50S ribosomal protein L15;protein_id=CAL18911.1;transl_table=11
AL590842.1	EMBL	sequence_feature	230405	230707	.	+	.	ID=id533;Note=Pfam match to entry PF01305 Ribosomal_L15%2C Ribosomal protein L15 amino terminal region%2C score 219.70%2C E-value 4.2e-62;gbkey=misc_feature;gene=rplO;inference=protein motif:PF01305
AL590842.1	EMBL	sequence_feature	230729	230824	.	+	.	ID=id534;Note=Pfam match to entry PF00256 L15%2C Ribosomal protein L15%2C score 38.00%2C E-value 2e-12;gbkey=misc_feature;gene=rplO;inference=protein motif:PF00256
AL590842.1	EMBL	sequence_feature	230729	230821	.	+	.	ID=id535;Note=PS00475 Ribosomal protein L15 signature.;gbkey=misc_feature;gene=rplO;inference=protein motif:ProSite:PS00475
AL590842.1	EMBL	gene	230847	232178	.	+	.	ID=gene227;Name=prlA;gbkey=Gene;gene=prlA;gene_biotype=protein_coding;gene_synonym=secY;locus_tag=YPO0229
AL590842.1	EMBL	CDS	230847	232178	.	+	0	ID=cds221;Parent=gene227;Dbxref=GOA:Q7CFT0,InterPro:IPR002208,InterPro:IPR023201,InterPro:IPR026593,UniProtKB/TrEMBL:Q7CFT0,NCBI_GP:CAL18912.1;Name=CAL18912.1;Note=Similar to Escherichia coli preprotein translocase SecY subunit SW:SECY_ECOLI (P03844) (443 aa) fasta scores: E(): 0%2C 98.0%25 id in 443 aa;gbkey=CDS;gene=prlA;inference=protein motif:TMHMM:2.0;product=preprotein translocase SecY subunit;protein_id=CAL18912.1;transl_table=11
AL590842.1	EMBL	sequence_feature	230910	230978	.	+	.	ID=id536;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=prlA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	231072	232103	.	+	.	ID=id537;Note=Pfam match to entry PF00344 secY%2C eubacterial secY protein%2C score 685.90%2C E-value 2e-202;gbkey=misc_feature;gene=prlA;inference=protein motif:PF00344
AL590842.1	EMBL	sequence_feature	231072	231140	.	+	.	ID=id538;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=prlA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	231072	231131	.	+	.	ID=id539;Note=PS00755 Protein secY signature 1.;gbkey=misc_feature;gene=prlA;inference=protein motif:ProSite:PS00755
AL590842.1	EMBL	sequence_feature	231201	231260	.	+	.	ID=id540;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=prlA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	231303	231371	.	+	.	ID=id541;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=prlA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	231363	231419	.	+	.	ID=id542;Note=PS00756 Protein secY signature 2.;gbkey=misc_feature;gene=prlA;inference=protein motif:ProSite:PS00756
AL590842.1	EMBL	sequence_feature	231390	231458	.	+	.	ID=id543;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=prlA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	231489	231557	.	+	.	ID=id544;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=prlA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	231666	231734	.	+	.	ID=id545;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=prlA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	231792	231860	.	+	.	ID=id546;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=prlA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	231951	232019	.	+	.	ID=id547;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=prlA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	232047	232115	.	+	.	ID=id548;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=prlA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	232212	232328	.	+	.	ID=gene228;Name=rpmJ;gbkey=Gene;gene=rpmJ;gene_biotype=protein_coding;locus_tag=YPO0230
AL590842.1	EMBL	CDS	232212	232328	.	+	0	ID=cds222;Parent=gene228;Dbxref=GOA:Q8ZJ91,InterPro:IPR000473,NCBI_GP:CAL18913.1;Name=CAL18913.1;Note=Similar to Escherichia coli 50S ribosomal protein L36 RpmJ SW:RL36_ECOLI (P21194) (38 aa) fasta scores: E(): 2.1e-15%2C 94.7%25 id in 38 aa;gbkey=CDS;gene=rpmJ;product=50S ribosomal protein L36;protein_id=CAL18913.1;transl_table=11
AL590842.1	EMBL	sequence_feature	232212	232325	.	+	.	ID=id549;Note=Pfam match to entry PF00444 Ribosomal_L36%2C Ribosomal protein L36%2C score 61.00%2C E-value 4.2e-19;gbkey=misc_feature;gene=rpmJ;inference=protein motif:PF00444
AL590842.1	EMBL	sequence_feature	232242	232322	.	+	.	ID=id550;Note=PS00828 Ribosomal protein L36 signature.;gbkey=misc_feature;gene=rpmJ;inference=protein motif:ProSite:PS00828
AL590842.1	EMBL	gene	232476	232832	.	+	.	ID=gene229;Name=rpsM;gbkey=Gene;gene=rpsM;gene_biotype=protein_coding;locus_tag=YPO0231
AL590842.1	EMBL	CDS	232476	232832	.	+	0	ID=cds223;Parent=gene229;Dbxref=GOA:Q8ZJ90,InterPro:IPR001892,InterPro:IPR010979,InterPro:IPR018269,InterPro:IPR019980,InterPro:IPR027437,NCBI_GP:CAL18914.1;Name=CAL18914.1;Note=Similar to Escherichia coli 30S ribosomal protein S13 RpsM SW:RS13_ECOLI (P02369) (117 aa) fasta scores: E(): 0%2C 85.5%25 id in 117 aa;gbkey=CDS;gene=rpsM;product=30S ribosomal protein S13;protein_id=CAL18914.1;transl_table=11
AL590842.1	EMBL	sequence_feature	232482	232799	.	+	.	ID=id551;Note=Pfam match to entry PF00416 Ribosomal_S13%2C Ribosomal protein S13/S18%2C score 205.70%2C E-value 7.1e-58;gbkey=misc_feature;gene=rpsM;inference=protein motif:PF00416
AL590842.1	EMBL	sequence_feature	232734	232775	.	+	.	ID=id552;Note=PS00646 Ribosomal protein S13 signature.;gbkey=misc_feature;gene=rpsM;inference=protein motif:ProSite:PS00646
AL590842.1	EMBL	gene	232849	233238	.	+	.	ID=gene230;Name=rpsK;gbkey=Gene;gene=rpsK;gene_biotype=protein_coding;locus_tag=YPO0232
AL590842.1	EMBL	CDS	232849	233238	.	+	0	ID=cds224;Parent=gene230;Dbxref=GOA:Q8ZJ89,InterPro:IPR001971,InterPro:IPR018102,InterPro:IPR019981,NCBI_GP:CAL18915.1;Name=CAL18915.1;Note=Similar to Escherichia coli 30S ribosomal protein S11 RpsK SW:RS11_ECOLI (P02366) (128 aa) fasta scores: E(): 0%2C 98.4%25 id in 128 aa;gbkey=CDS;gene=rpsK;product=30S ribosomal protein S11;protein_id=CAL18915.1;transl_table=11
AL590842.1	EMBL	sequence_feature	232906	233232	.	+	.	ID=id553;Note=Pfam match to entry PF00411 Ribosomal_S11%2C Ribosomal protein S11%2C score 256.30%2C E-value 7e-79;gbkey=misc_feature;gene=rpsK;inference=protein motif:PF00411
AL590842.1	EMBL	sequence_feature	233137	233205	.	+	.	ID=id554;Note=PS00054 Ribosomal protein S11 signature.;gbkey=misc_feature;gene=rpsK;inference=protein motif:ProSite:PS00054
AL590842.1	EMBL	gene	233269	233889	.	+	.	ID=gene231;Name=ramA;gbkey=Gene;gene=ramA;gene_biotype=protein_coding;gene_synonym=rpsD;locus_tag=YPO0233
AL590842.1	EMBL	CDS	233269	233889	.	+	0	ID=cds225;Parent=gene231;Dbxref=GOA:Q8ZJ88,InterPro:IPR001912,InterPro:IPR002942,InterPro:IPR005709,InterPro:IPR018079,InterPro:IPR022801,NCBI_GP:CAL18916.1;Name=CAL18916.1;Note=Similar to Escherichia coli 30S ribosomal protein S4 RpsD SW:RS4_ECOLI (P02354) (205 aa) fasta scores: E(): 0%2C96.1%25 id in 205 aa;gbkey=CDS;gene=ramA;product=30S ribosomal protein S4;protein_id=CAL18916.1;transl_table=11
AL590842.1	EMBL	sequence_feature	233269	233553	.	+	.	ID=id555;Note=Pfam match to entry PF00163 Ribosomal_S4%2C Ribosomal protein S4/S9 N-terminal domain%2C score 139.40%2C E-value 6.5e-38;gbkey=misc_feature;gene=ramA;inference=protein motif:PF00163
AL590842.1	EMBL	sequence_feature	233548	233622	.	+	.	ID=id556;Note=PS00632 Ribosomal protein S4 signature.;gbkey=misc_feature;gene=ramA;inference=protein motif:ProSite:PS00632
AL590842.1	EMBL	sequence_feature	233554	233697	.	+	.	ID=id557;Note=Pfam match to entry PF01479 S4%2C S4 domain%2C score 78.30%2C E-value 1.6e-19;gbkey=misc_feature;gene=ramA;inference=protein motif:PF01479
AL590842.1	EMBL	gene	233915	234904	.	+	.	ID=gene232;Name=rpoA;gbkey=Gene;gene=rpoA;gene_biotype=protein_coding;locus_tag=YPO0234
AL590842.1	EMBL	CDS	233915	234904	.	+	0	ID=cds226;Parent=gene232;Dbxref=GOA:Q8ZJ87,InterPro:IPR009025,InterPro:IPR011260,InterPro:IPR011262,InterPro:IPR011263,InterPro:IPR011773,NCBI_GP:CAL18917.1;Name=CAL18917.1;Note=Similar to Escherichia coli%2C and Salmonella typhimurium DNA-directed RNA polymerase alpha chain RpoA SW:RPOA_ECOLI (P00574) (329 aa) fasta scores: E(): 0%2C 99.4%25 id in 329 aa;gbkey=CDS;gene=rpoA;product=DNA-directed RNA polymerase alpha chain;protein_id=CAL18917.1;transl_table=11
AL590842.1	EMBL	sequence_feature	233930	234598	.	+	.	ID=id558;Note=Pfam match to entry PF01000 RNA_pol_A_bac%2C Bacterial RNA polymerase%2C alpha chain%2C score 385.10%2C E-value 7e-112;gbkey=misc_feature;gene=rpoA;inference=protein motif:PF01000
AL590842.1	EMBL	gene	234945	235334	.	+	.	ID=gene233;Name=rplQ;gbkey=Gene;gene=rplQ;gene_biotype=protein_coding;locus_tag=YPO0235
AL590842.1	EMBL	CDS	234945	235334	.	+	0	ID=cds227;Parent=gene233;Dbxref=GOA:Q7CFS8,InterPro:IPR000456,NCBI_GP:CAL18918.1;Name=CAL18918.1;Note=Similar to Escherichia coli 50S ribosomal protein L17 RplQ SW:RL17_ECOLI (P02416) (127 aa) fasta scores: E(): 0%2C 94.5%25 id in 127 aa;gbkey=CDS;gene=rplQ;product=50S ribosomal protein L17;protein_id=CAL18918.1;transl_table=11
AL590842.1	EMBL	sequence_feature	235002	235292	.	+	.	ID=id559;Note=Pfam match to entry PF01196 Ribosomal_L17%2C Ribosomal protein L17%2C score 231.80%2C E-value 9.8e-66;gbkey=misc_feature;gene=rplQ;inference=protein motif:PF01196
AL590842.1	EMBL	sequence_feature	235044	235112	.	+	.	ID=id560;Note=PS01167 Ribosomal protein L17 signature.;gbkey=misc_feature;gene=rplQ;inference=protein motif:ProSite:PS01167
AL590842.1	EMBL	gene	235781	236206	.	+	.	ID=gene234;Name=YPO0236;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0236
AL590842.1	EMBL	CDS	235781	236206	.	+	0	ID=cds228;Parent=gene234;Dbxref=GOA:Q0WK71,InterPro:IPR000551,InterPro:IPR009061,InterPro:IPR011788,InterPro:IPR015358,UniProtKB/TrEMBL:Q0WK71,NCBI_GP:CAL18919.1;Name=CAL18919.1;Note=Similar to Escherichia coli zinc responsive regulator of the zinc/cadmium expoter%2C ZntR SW:ZNTR_ECOLI (P36676) (141 aa) fasta scores: E(): 0%2C 69.6%25 id in 135 aa;gbkey=CDS;product=MerR-family transcriptional regulator;protein_id=CAL18919.1;transl_table=11
AL590842.1	EMBL	sequence_feature	235784	235849	.	+	.	ID=id561;Note=Predicted helix-turn-helix motif with score 1795 (+5.30 SD) at aa 5-26%2C sequence LKIGQLAKLADVTPDTIRYYEK;gbkey=misc_feature
AL590842.1	EMBL	sequence_feature	235793	235900	.	+	.	ID=id562;Note=Pfam match to entry PF00376 merR%2C Bacterial regulatory proteins%2C merR family%2C score 67.60%2C E-value 2.7e-16;gbkey=misc_feature;inference=protein motif:PF00376
AL590842.1	EMBL	sequence_feature	235793	235861	.	+	.	ID=id563;Note=PS00552 Bacterial regulatory proteins%2C merR family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00552
AL590842.1	EMBL	gene	236294	236494	.	+	.	ID=gene235;Name=YPO0237;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0237
AL590842.1	EMBL	CDS	236294	236494	.	+	0	ID=cds229;Parent=gene235;Dbxref=InterPro:IPR005589,UniProtKB/TrEMBL:Q7CFS7,NCBI_GP:CAL18920.1;Name=CAL18920.1;Note=Similar to Escherichia coli hypothetical protein YhdL SW:YHDL_ECOLI (P36675) (72 aa) fasta scores: E(): 5.5e-17%2C 69.4%25 id in 62 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL18920.1;transl_table=11
AL590842.1	EMBL	gene	236604	237017	.	-	.	ID=gene236;Name=mscL;gbkey=Gene;gene=mscL;gene_biotype=protein_coding;locus_tag=YPO0238
AL590842.1	EMBL	CDS	236604	237017	.	-	0	ID=cds230;Parent=gene236;Dbxref=GOA:Q8ZJ83,InterPro:IPR001185,InterPro:IPR019823,NCBI_GP:CAL18921.1;Name=CAL18921.1;Note=Similar to Escherichia coli O157:H7 mechanosensitive ion channel MscL TR:AAG58412 (EMBL:AE005556) (136 aa) fasta scores: E(): 0%2C 75.9%25 id in 137 aa;gbkey=CDS;gene=mscL;inference=similar to sequence:INSDC:AE005556;product=mechanosensitive ion channel;protein_id=CAL18921.1;transl_table=11
AL590842.1	EMBL	sequence_feature	236616	237011	.	-	.	ID=id564;Note=Pfam match to entry PF01741 MscL%2C Large-conductance mechanosensitive channel%2C MscL%2C score 274.30%2C E-value 1.6e-78;gbkey=misc_feature;gene=mscL;inference=protein motif:PF01741
AL590842.1	EMBL	sequence_feature	236730	236786	.	-	.	ID=id565;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=mscL;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	236904	236969	.	-	.	ID=id566;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=mscL;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	236940	236981	.	-	.	ID=id567;Note=PS01327 Large-conductance mechanosensitive channels mscL family signature.;gbkey=misc_feature;gene=mscL;inference=protein motif:ProSite:PS01327
AL590842.1	EMBL	gene	237156	238532	.	-	.	ID=gene237;Name=trkA;gbkey=Gene;gene=trkA;gene_biotype=protein_coding;locus_tag=YPO0239
AL590842.1	EMBL	CDS	237156	238532	.	-	0	ID=cds231;Parent=gene237;Dbxref=GOA:Q7CFS6,InterPro:IPR003148,InterPro:IPR006036,InterPro:IPR006037,InterPro:IPR016040,UniProtKB/TrEMBL:Q7CFS6,NCBI_GP:CAL18922.1;Name=CAL18922.1;Note=Similar to Escherichia coli Trk system potassium uptake protein TrkA SW:TRKA_ECOLI (P23868) (458 aa) fasta scores: E(): 0%2C 86.2%25 id in 458 aa;gbkey=CDS;gene=trkA;product=trk system potassium uptake protein;protein_id=CAL18922.1;transl_table=11
AL590842.1	EMBL	sequence_feature	237168	237431	.	-	.	ID=id568;Note=Pfam match to entry PF02080 TrkA%2C Potassium channel%2Cscore 58.80%2C E-value 1.2e-13;gbkey=misc_feature;gene=trkA;inference=protein motif:PF02080
AL590842.1	EMBL	sequence_feature	237483	237833	.	-	.	ID=id569;Note=Pfam match to entry PF02254 KTN%2C KTN NAD-binding domain%2C score 55.50%2C E-value 1.2e-12;gbkey=misc_feature;gene=trkA;inference=protein motif:PF02254
AL590842.1	EMBL	sequence_feature	237846	238115	.	-	.	ID=id570;Note=Pfam match to entry PF02080 TrkA%2C Potassium channel%2Cscore 83.60%2C E-value 3.9e-21;gbkey=misc_feature;gene=trkA;inference=protein motif:PF02080
AL590842.1	EMBL	sequence_feature	238158	238529	.	-	.	ID=id571;Note=Pfam match to entry PF02254 KTN%2C KTN NAD-binding domain%2C score 75.40%2C E-value 1.2e-18;gbkey=misc_feature;gene=trkA;inference=protein motif:PF02254
AL590842.1	EMBL	gene	238588	239877	.	-	.	ID=gene238;Name=YPO0240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0240
AL590842.1	EMBL	CDS	238588	239877	.	-	0	ID=cds232;Parent=gene238;Dbxref=GOA:Q8ZJ81,InterPro:IPR001678,InterPro:IPR004573,InterPro:IPR006027,InterPro:IPR018314,InterPro:IPR023267,InterPro:IPR023541,InterPro:IPR029063,NCBI_GP:CAL18923.1;Name=CAL18923.1;Note=Similar to Escherichia coli hypothetical protein Sun which belongs to the Bacterial Sun-family and the Eukaryotic nucleolar Nol1/Nop2 family SW:SUN_ECOLI (P36929) (429 aa) fasta scores: E(): 0%2C 73.9%25 id in 429 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL18923.1;transl_table=11
AL590842.1	EMBL	sequence_feature	238597	239388	.	-	.	ID=id572;Note=Pfam match to entry PF01189 Nol1_Nop2_Sun%2CNOL1/NOP2/sun family%2C score 417.40%2C E-value 1.3e-121;gbkey=misc_feature;inference=protein motif:PF01189
AL590842.1	EMBL	sequence_feature	238897	238932	.	-	.	ID=id573;Note=PS01153 NOL1/NOP2/sun family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01153
AL590842.1	EMBL	sequence_feature	239500	239859	.	-	.	ID=id574;Note=Pfam match to entry PF01029 NusB%2C NusB family%2C score 177.20%2C E-value 2.7e-49;gbkey=misc_feature;inference=protein motif:PF01029
AL590842.1	EMBL	gene	239971	240918	.	-	.	ID=gene239;Name=fmt;gbkey=Gene;gene=fmt;gene_biotype=protein_coding;locus_tag=YPO0241
AL590842.1	EMBL	CDS	239971	240918	.	-	0	ID=cds233;Parent=gene239;Dbxref=GOA:Q8ZJ80,InterPro:IPR001555,InterPro:IPR002376,InterPro:IPR005793,InterPro:IPR005794,InterPro:IPR011034,InterPro:IPR015518,PDB:3R8X,NCBI_GP:CAL18924.1;Name=CAL18924.1;Note=Similar to Escherichia coli methionyl-tRNA formyltransferase Fmt SW:FMT_ECOLI (P23882) (314 aa) fasta scores: E(): 0%2C 75.8%25 id in 314 aa;gbkey=CDS;gene=fmt;product=methionyl-tRNA formyltransferase;protein_id=CAL18924.1;transl_table=11
AL590842.1	EMBL	sequence_feature	240367	240912	.	-	.	ID=id575;Note=Pfam match to entry PF00551 formyl_transf%2C Formyl transferase%2C score 241.70%2C E-value 1e-68;gbkey=misc_feature;gene=fmt;inference=protein motif:PF00551
AL590842.1	EMBL	gene	240943	241455	.	-	.	ID=gene240;Name=def;gbkey=Gene;gene=def;gene_biotype=protein_coding;gene_synonym=fms;locus_tag=YPO0242
AL590842.1	EMBL	CDS	240943	241455	.	-	0	ID=cds234;Parent=gene240;Dbxref=GOA:Q8ZJ79,InterPro:IPR000181,InterPro:IPR023635,NCBI_GP:CAL18925.1;Name=CAL18925.1;Note=Similar to Escherichia coli polypeptide deformylase Def SW:DEF_ECOLI (P27251) (168 aa) fasta scores: E(): 0%2C89.3%25 id in 168 aa;gbkey=CDS;gene=def;product=polypeptide deformylase;protein_id=CAL18925.1;transl_table=11
AL590842.1	EMBL	sequence_feature	241027	241443	.	-	.	ID=id576;Note=Pfam match to entry PF01327 Pep_deformylase%2CPolypeptide deformylase%2C score 260.60%2C E-value 2.1e-74;gbkey=misc_feature;gene=def;inference=protein motif:PF01327
AL590842.1	EMBL	gene	241590	242711	.	+	.	ID=gene241;Name=YPO0243;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0243
AL590842.1	EMBL	CDS	241590	242711	.	+	0	ID=cds235;Parent=gene241;Dbxref=GOA:Q7CFS4,InterPro:IPR003488,UniProtKB/TrEMBL:Q7CFS4,NCBI_GP:CAL18926.1;Name=CAL18926.1;Note=Similar to Escherichia coli hypothetical protein Smf SW:SMF_ECOLI (P30852) (374 aa) fasta scores: E(): 0%2C 54.0%25 id in 374 aa%2C and to Haemophilus influenzae Smf protein SW:SMF_HAEIN (P43862) (373 aa) fasta scores: E(): 0%2C 44.0%25 id in 368 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL18926.1;transl_table=11
AL590842.1	EMBL	sequence_feature	241785	242411	.	+	.	ID=id577;Note=Pfam match to entry PF02481 SMF%2C %2C score 363.70%2CE-value 2e-105;gbkey=misc_feature;inference=protein motif:PF02481
AL590842.1	EMBL	gene	242719	243156	.	+	.	ID=gene242;Name=YPO0244;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0244
AL590842.1	EMBL	CDS	242719	243156	.	+	0	ID=cds236;Parent=gene242;Dbxref=InterPro:IPR007456,NCBI_GP:CAL18927.1;Name=CAL18927.1;Note=Similar to Escherichia coli hypothetical protein Smg SW:SMG_ECOLI (P30853) (157 aa) fasta scores: E(): 0%2C 68.3%25 id in 145 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL18927.1;transl_table=11
AL590842.1	EMBL	gene	243197	243736	.	+	.	ID=gene243;Name=YPO0245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0245
AL590842.1	EMBL	CDS	243197	243736	.	+	0	ID=cds237;Parent=gene243;Dbxref=GOA:Q0WK62,InterPro:IPR000380,InterPro:IPR013498,UniProtKB/TrEMBL:Q0WK62,NCBI_GP:CAL18928.1;Name=CAL18928.1;Note=Similar to the C-terminal DNA-binding zinc finger domains of several DNA topoisomerases e.g. Bacillus subtilis SW:TOP1_BACSU (P39814) (691 aa) fasta scores: E(): 3.3e-15%2C 40.7%25 id in 108 aa. Also similar to Escherichia coli hypothetical protein YrdD SW:YRDD_ECOLI (P45771) (169 aa) fasta scores: E(): 0%2C 69.0%25 id in 155 aa;gbkey=CDS;product=putative DNA-binding protein;protein_id=CAL18928.1;transl_table=11
AL590842.1	EMBL	sequence_feature	243224	243340	.	+	.	ID=id578;Note=Pfam match to entry PF01396 zf-C4_Topoisom%2CTopoisomerase DNA binding C4 zinc finger%2C score 64.40%2CE-value 2.5e-15;gbkey=misc_feature;inference=protein motif:PF01396
AL590842.1	EMBL	sequence_feature	243371	243487	.	+	.	ID=id579;Note=Pfam match to entry PF01396 zf-C4_Topoisom%2CTopoisomerase DNA binding C4 zinc finger%2C score 70.20%2CE-value 4.4e-17;gbkey=misc_feature;inference=protein motif:PF01396
AL590842.1	EMBL	sequence_feature	243497	243619	.	+	.	ID=id580;Note=Pfam match to entry PF01396 zf-C4_Topoisom%2CTopoisomerase DNA binding C4 zinc finger%2C score 64.90%2CE-value 1.7e-15;gbkey=misc_feature;inference=protein motif:PF01396
AL590842.1	EMBL	gene	243738	244310	.	+	.	ID=gene244;Name=YPO0245a;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0245a
AL590842.1	EMBL	CDS	243738	244310	.	+	0	ID=cds238;Parent=gene244;Dbxref=GOA:Q74XX5,InterPro:IPR006070,InterPro:IPR017945,InterPro:IPR023535,NCBI_GP:CAL18929.1;Name=CAL18929.1;Note=Similar to Escherichia coli hypothetical protein YrdC SW:YRDC_ECOLI (P45748) (190 aa) fasta scores: E(): 0%2C67.9%25 id in 190 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL18929.1;transl_table=11
AL590842.1	EMBL	sequence_feature	243801	243839	.	+	.	ID=id581;Note=PS01147 SUA5/yciO/yrdC family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01147
AL590842.1	EMBL	gene	244319	245140	.	+	.	ID=gene245;Name=aroE;gbkey=Gene;gene=aroE;gene_biotype=protein_coding;locus_tag=YPO0246
AL590842.1	EMBL	CDS	244319	245140	.	+	0	ID=cds239;Parent=gene245;Dbxref=GOA:Q8ZJ74,InterPro:IPR006151,InterPro:IPR011342,InterPro:IPR013708,InterPro:IPR016040,InterPro:IPR022893,NCBI_GP:CAL18930.1;Name=CAL18930.1;Note=Similar to Escherichia coli shikimate 5-dehydrogenase AroE SW:AROE_ECOLI (P15770) (272 aa) fasta scores: E(): 0%2C 61.7%25 id in 269 aa;gbkey=CDS;gene=aroE;product=shikimate 5-dehydrogenase;protein_id=CAL18930.1;transl_table=11
AL590842.1	EMBL	sequence_feature	244376	245086	.	+	.	ID=id582;Note=Pfam match to entry PF01488 Shikimate_DH%2C Shikimate / quinate 5-dehydrogenase%2C score 323.40%2C E-value 2.5e-93;gbkey=misc_feature;gene=aroE;inference=protein motif:PF01488
AL590842.1	EMBL	pseudogene	245195	245725	.	-	.	ID=gene246;Name=YPO0247;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO0247;pseudo=true
AL590842.1	EMBL	CDS	245195	245725	.	-	0	ID=cds240;Parent=gene246;Dbxref=PSEUDO:CAL18931.1;Note=Similar to many proteins of undefined function e.g. Escherichia coli O157:H7 putative transferase z4650 TR:AAG58401 (EMBL:AE005555) (256 aa) fasta scores: E(): 0%2C72.7%25 id in 172 aa. This CDS has been disrupted by a IS100 element.;gbkey=CDS;inference=similar to sequence:INSDC:AE005555;product=putative transferase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	245342	245395	.	-	.	ID=id583;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 13.00%2CE-value 7.2;gbkey=misc_feature;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	245396	245449	.	-	.	ID=id584;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 12.60%2CE-value 9.3;gbkey=misc_feature;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	245534	245587	.	-	.	ID=id585;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 7.20%2C E-value 80;gbkey=misc_feature;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	245597	245650	.	-	.	ID=id586;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 11.90%2CE-value 16;gbkey=misc_feature;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	245651	245704	.	-	.	ID=id587;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 0.30%2C E-value 7e+02;gbkey=misc_feature;inference=protein motif:PF00132
AL590842.1	EMBL	repeat_region	245726	247679	.	-	.	ID=id588;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	245726	245753	.	+	.	ID=id589;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	245792	246574	.	-	.	ID=gene247;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO0248
AL590842.1	EMBL	CDS	245792	246574	.	-	0	ID=cds241;Parent=gene247;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL18932.1;Name=CAL18932.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL18932.1;transl_table=11
AL590842.1	EMBL	sequence_feature	245867	246406	.	-	.	ID=id590;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	246224	246247	.	-	.	ID=id591;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	246571	247593	.	-	.	ID=gene248;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO0249
AL590842.1	EMBL	CDS	246571	247593	.	-	0	ID=cds242;Parent=gene248;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL18933.1;Name=CAL18933.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL18933.1;transl_table=11
AL590842.1	EMBL	sequence_feature	246715	247248	.	-	.	ID=id592;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	sequence_feature	247477	247542	.	-	.	ID=id593;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	247486	247569	.	-	.	ID=id594;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	INVERTED	247652	247679	.	-	.	ID=id595;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	pseudogene	247679	248638	.	+	.	ID=gene249;Name=YPO0250;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO0250;pseudo=true
AL590842.1	EMBL	CDS	247679	248638	.	+	0	ID=cds243;Parent=gene249;Note=Similar to Bacillus subtilis hypothetical protein YtaP TR:O34973 (EMBL:AF008220) (299 aa) fasta scores: E(): 1.8e-13%2C 30.0%25 id in 323 aa. This CDS has been disrupted by the insertion of an IS100 element.;gbkey=CDS;inference=similar to sequence:INSDC:AF008220;product=putative hydrolase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	247823	247888	.	+	.	ID=id596;Note=Pfam match to entry PF01738 DLH%2C Dienelactone hydrolase family%2C score 3.40%2C E-value 7.3;gbkey=misc_feature;inference=protein motif:PF01738
AL590842.1	EMBL	sequence_feature	248165	248293	.	+	.	ID=id597;Note=Pfam match to entry PF01738 DLH%2C Dienelactone hydrolase family%2C score 19.60%2C E-value 0.00021;gbkey=misc_feature;inference=protein motif:PF01738
AL590842.1	EMBL	gene	248712	250367	.	-	.	ID=gene250;Name=YPO0251;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0251
AL590842.1	EMBL	CDS	248712	250367	.	-	0	ID=cds244;Parent=gene250;Dbxref=GOA:Q8ZJ73,InterPro:IPR001734,InterPro:IPR014083,InterPro:IPR018212,InterPro:IPR019900,NCBI_GP:CAL18935.1;Name=CAL18935.1;Note=Similar to many proposed sodium symporter family proteins including: Pseudomonas aeruginosa PA3234 TR:AAG06622 (EMBL:AE004746) (551 aa) fasta scores: E(): 0%2C83.3%25 id in 552 aa and to Haemophilus influenzae PutP SW:PUTP_HAEIN (P45174) (504 aa) fasta scores: E(): 1.1e-21%2C24.2%25 id in 466 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004746;product=putative transmembrane transport protein;protein_id=CAL18935.1;transl_table=11
AL590842.1	EMBL	sequence_feature	248811	248861	.	-	.	ID=id598;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	248907	248972	.	-	.	ID=id599;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	248958	250178	.	-	.	ID=id600;Note=Pfam match to entry PF00474 SSF%2C Sodium:solute symporter family%2C score 605.70%2C E-value 2.7e-178;gbkey=misc_feature;inference=protein motif:PF00474
AL590842.1	EMBL	sequence_feature	249012	249077	.	-	.	ID=id601;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	249093	249149	.	-	.	ID=id602;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	249213	249278	.	-	.	ID=id603;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	249402	249467	.	-	.	ID=id604;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	249507	249572	.	-	.	ID=id605;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	249684	249749	.	-	.	ID=id606;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	249756	249833	.	-	.	ID=id607;Note=PS00456 Sodium:solute symporter family signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS00456
AL590842.1	EMBL	sequence_feature	249765	249830	.	-	.	ID=id608;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	249861	249926	.	-	.	ID=id609;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	249990	250055	.	-	.	ID=id610;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	250071	250136	.	-	.	ID=id611;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	250200	250265	.	-	.	ID=id612;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	250296	250346	.	-	.	ID=id613;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	250364	250675	.	-	.	ID=gene251;Name=YPO0252;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0252
AL590842.1	EMBL	CDS	250364	250675	.	-	0	ID=cds245;Parent=gene251;Dbxref=InterPro:IPR007436,UniProtKB/TrEMBL:Q7CKS8,NCBI_GP:CAL18936.1;Name=CAL18936.1;Note=Similar to Escherichia coli hypothetical 11.7 kDa protein in soxR-acs intergenic region YjcH SW:YJCH_ECOLI (P32706) (104 aa) fasta scores: E(): 1e-25%2C 64.7%25 id in 102 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL18936.1;transl_table=11
AL590842.1	EMBL	sequence_feature	250424	250489	.	-	.	ID=id614;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	250535	250600	.	-	.	ID=id615;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	250732	252690	.	-	.	ID=gene252;Name=acs;gbkey=Gene;gene=acs;gene_biotype=protein_coding;locus_tag=YPO0253
AL590842.1	EMBL	CDS	250732	252690	.	-	0	ID=cds246;Parent=gene252;Dbxref=GOA:Q8D1G8,InterPro:IPR000873,InterPro:IPR011904,InterPro:IPR020845,InterPro:IPR025110,NCBI_GP:CAL18937.1;Name=CAL18937.1;Note=Similar to Escherichia coli acetyl-coenzyme A synthetase Acs SW:ACSA_ECOLI (P27550) (652 aa) fasta scores: E(): 0%2C 84.8%25 id in 652 aa;gbkey=CDS;gene=acs;product=acetyl-coenzyme A synthetase;protein_id=CAL18937.1;transl_table=11
AL590842.1	EMBL	sequence_feature	251050	252366	.	-	.	ID=id616;Note=Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%2C score 527.00%2C E-value 1.3e-154;gbkey=misc_feature;gene=acs;inference=protein motif:PF00501
AL590842.1	EMBL	sequence_feature	251875	251910	.	-	.	ID=id617;Note=PS00455 Putative AMP-binding domain signature.;gbkey=misc_feature;gene=acs;inference=protein motif:ProSite:PS00455
AL590842.1	EMBL	gene	253545	254861	.	+	.	ID=gene253;Name=gltP;gbkey=Gene;gene=gltP;gene_biotype=protein_coding;locus_tag=YPO0254
AL590842.1	EMBL	CDS	253545	254861	.	+	0	ID=cds247;Parent=gene253;Dbxref=GOA:Q7CKS7,InterPro:IPR001991,InterPro:IPR018107,UniProtKB/TrEMBL:Q7CKS7,NCBI_GP:CAL18938.1;Name=CAL18938.1;Note=Similar to Escherichia coli proton glutamate symport protein GltP SW:GLTP_ECOLI (P21345) (437 aa) fasta scores: E(): 0%2C 81.0%25 id in 437 aa;gbkey=CDS;gene=gltP;inference=protein motif:TMHMM:2.0;product=proton glutamate symport protein;protein_id=CAL18938.1;transl_table=11
AL590842.1	EMBL	sequence_feature	253563	253631	.	+	.	ID=id618;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	253566	254777	.	+	.	ID=id619;Note=Pfam match to entry PF00375 SDF%2CSodium:dicarboxylate symporter family%2C score 724.50%2CE-value 4.8e-214;gbkey=misc_feature;gene=gltP;inference=protein motif:PF00375
AL590842.1	EMBL	sequence_feature	253671	253718	.	+	.	ID=id620;Note=PS00713 Sodium:dicarboxylate symporter family signature 1.;gbkey=misc_feature;gene=gltP;inference=protein motif:ProSite:PS00713
AL590842.1	EMBL	sequence_feature	253689	253757	.	+	.	ID=id621;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	253794	253862	.	+	.	ID=id622;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	254022	254075	.	+	.	ID=id623;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	254160	254228	.	+	.	ID=id624;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	254241	254309	.	+	.	ID=id625;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	254460	254531	.	+	.	ID=id626;Note=PS00714 Sodium:dicarboxylate symporter family signature 2.;gbkey=misc_feature;gene=gltP;inference=protein motif:ProSite:PS00714
AL590842.1	EMBL	sequence_feature	254520	254588	.	+	.	ID=id627;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	254631	254699	.	+	.	ID=id628;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	255039	273457	.	-	.	ID=id629;Note=Region encoding a type III ssecretion system which is shares a high degree of synteny and a significant level of sequence identity with the type III secretion system carried on the Salmonella typhi pathogenicity island 2.;gbkey=misc_feature
AL590842.1	EMBL	gene	255039	255671	.	-	.	ID=gene254;Name=YPO0255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0255
AL590842.1	EMBL	CDS	255039	255671	.	-	0	ID=cds248;Parent=gene254;Dbxref=GOA:Q7CKS6,InterPro:IPR000792,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:Q7CKS6,NCBI_GP:CAL18939.1;Name=CAL18939.1;Note=Similar to Salmonella typhimurium transcriptional activator SsrB TR:O54305 (EMBL:Z95891) (193 aa) fasta scores: E(): 0%2C 52.9%25 id in 189 aa%2C and to Pseudomonas aeruginosa response regulator GacA or Pa2586 TR:AAG05974 (EMBL:U27988) (214 aa) fasta scores: E(): 2.3e-22%2C 34.3%25 id in 207 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z95891;product=putative two-component response regulator;protein_id=CAL18939.1;transl_table=11
AL590842.1	EMBL	sequence_feature	255045	255236	.	-	.	ID=id630;Note=Pfam match to entry PF00196 GerE%2C Bacterial regulatory proteins%2C luxR family%2C score 73.20%2C E-value 5.3e-18;gbkey=misc_feature;inference=protein motif:PF00196
AL590842.1	EMBL	sequence_feature	255102	255185	.	-	.	ID=id631;Note=PS00622 Bacterial regulatory proteins%2C luxR family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00622
AL590842.1	EMBL	sequence_feature	255324	255665	.	-	.	ID=id632;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 107.90%2C E-value 1.9e-28;gbkey=misc_feature;inference=protein motif:PF00072
AL590842.1	EMBL	gene	255684	258503	.	-	.	ID=gene255;Name=YPO0256;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0256
AL590842.1	EMBL	CDS	255684	258503	.	-	0	ID=cds249;Parent=gene255;Dbxref=GOA:Q0WK52,InterPro:IPR001789,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR008207,InterPro:IPR009082,InterPro:IPR011006,UniProtKB/TrEMBL:Q0WK52,NCBI_GP:CAL18940.1;Name=CAL18940.1;Note=Similar to Salmonella typhimurium pathogenicity island regulator gene SpiR TR:P74862 (EMBL:U51927) (823 aa) fasta scores: E(): 0%2C 46.5%25 id in 826 aa and to Vibrio cholerae sensory box sensor histidine kinase/response regulator VieS VC1653 TR:Q9KRI8 (EMBL:AE004243) (1146 aa) fasta scores: E(): 0%2C 30.4%25 id in 559 aa. This CDS carries both the sensor and response regulator domains;gbkey=CDS;inference=similar to sequence:INSDC:U51927;product=two-component sensor/regulator;protein_id=CAL18940.1;transl_table=11
AL590842.1	EMBL	sequence_feature	256077	256424	.	-	.	ID=id633;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 96.10%2C E-value 6.8e-25;gbkey=misc_feature;inference=protein motif:PF00072
AL590842.1	EMBL	sequence_feature	256665	257285	.	-	.	ID=id634;Note=Pfam match to entry PF00512 signal%2C Histidine kinase%2C score 233.70%2C E-value 2.6e-66;gbkey=misc_feature;inference=protein motif:PF00512
AL590842.1	EMBL	sequence_feature	257400	257609	.	-	.	ID=id635;Note=Pfam match to entry PF00672 DUF5%2C HAMP domain%2C score 34.80%2C E-value 1.9e-06;gbkey=misc_feature;inference=protein motif:PF00672
AL590842.1	EMBL	sequence_feature	257496	257546	.	-	.	ID=id636;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	257553	257618	.	-	.	ID=id637;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	258399	258464	.	-	.	ID=id638;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	258675	260246	.	+	.	ID=gene256;Name=YPO0257;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0257
AL590842.1	EMBL	CDS	258675	260246	.	+	0	ID=cds250;Parent=gene256;Dbxref=GOA:Q7CKS5,InterPro:IPR003522,InterPro:IPR004845,InterPro:IPR004846,InterPro:IPR005644,UniProtKB/TrEMBL:Q7CKS5,NCBI_GP:CAL18941.1;Name=CAL18941.1;Note=Similar to Salmonella typhimurium Pathogenicity island secretion protein SpiA TR:P74864 (EMBL:U51927) (497 aa) fasta scores: E(): 0%2C 51.5%25 id in 499 aa;gbkey=CDS;inference=similar to sequence:INSDC:U51927;product=possible type III secretion protein;protein_id=CAL18941.1;transl_table=11
AL590842.1	EMBL	sequence_feature	258735	258803	.	+	.	ID=id639;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	258864	260234	.	+	.	ID=id640;Note=Pfam match to entry PF00263 Bac_GSPproteins%2CBacterial type II secretion system protein%2C score 237.20%2CE-value 2.2e-67;gbkey=misc_feature;inference=protein motif:PF00263
AL590842.1	EMBL	sequence_feature	260067	260168	.	+	.	ID=id641;Note=PS00875 Bacterial type II secretion system protein D signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00875
AL590842.1	EMBL	gene	260248	261462	.	+	.	ID=gene257;Name=YPO0258;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0258
AL590842.1	EMBL	CDS	260248	261462	.	+	0	ID=cds251;Parent=gene257;Dbxref=InterPro:IPR012843,UniProtKB/TrEMBL:Q0WK50,NCBI_GP:CAL18942.1;Name=CAL18942.1;Note=Similar to several type III secretion proteins including: Escherichia coli EscD TR:O52148 (EMBL:AF022236) (406 aa) fasta scores: E(): 1.8e-26%2C 25.1%25 id in 414 aa and Yersinia enterocolitica Yop proteins translocation protein D YscD SW:YSCD_YEREN (Q01245) (418 aa) fasta scores: E(): 0.00018%2C 23.5%25 id in 404 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF022236;product=putative type-III secretion protein;protein_id=CAL18942.1;transl_table=11
AL590842.1	EMBL	sequence_feature	260575	260643	.	+	.	ID=id642;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	261481	261702	.	+	.	ID=gene258;Name=YPO0259;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0259
AL590842.1	EMBL	CDS	261481	261702	.	+	0	ID=cds252;Parent=gene258;Dbxref=GOA:Q7CKS4,InterPro:IPR012671,UniProtKB/TrEMBL:Q7CKS4,NCBI_GP:CAL18943.1;Name=CAL18943.1;Note=Similar to Salmonella typhimurium putative secretory apparatus component SsaE TR:O84943 (EMBL:AF020808) (80 aa) fasta scores: E(): 0.15%2C 31.0%25 id in 71 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF020808;product=putative type III secretion apparatus;protein_id=CAL18943.1;transl_table=11
AL590842.1	EMBL	gene	261876	262496	.	+	.	ID=gene259;Name=YPO0260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0260
AL590842.1	EMBL	CDS	261876	262496	.	+	0	ID=cds253;Parent=gene259;Dbxref=GOA:Q7CKS3,InterPro:IPR009057,InterPro:IPR018060,InterPro:IPR020449,UniProtKB/TrEMBL:Q7CKS3,NCBI_GP:CAL18944.1;Name=CAL18944.1;Note=Similar to the C-terminal DNA-binding domain of several AraC-family regulators e.g. Yersinia pestis thermoregulatory transcription factor LcrF TR:AAC62554 (EMBL:AF053946) (271 aa) fasta scores: E(): 3e-11%2C 37.9%25 id in 95 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF053946;product=putative AraC-family regulatory protein;protein_id=CAL18944.1;transl_table=11
AL590842.1	EMBL	sequence_feature	262230	262490	.	+	.	ID=id643;Note=Pfam match to entry PF00165 HTH_AraC%2C Bacterial regulatory helix-turn-helix proteins%2C araC family%2C score 70.30%2C E-value 4.1e-17;gbkey=misc_feature;inference=protein motif:PF00165
AL590842.1	EMBL	gene	262506	262721	.	+	.	ID=gene260;Name=YPO0260a;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0260a
AL590842.1	EMBL	CDS	262506	262721	.	+	0	ID=cds254;Parent=gene260;Dbxref=GOA:Q74XK4,InterPro:IPR011841,InterPro:IPR021123,UniProtKB/TrEMBL:Q74XK4,NCBI_GP:CAL18945.1;Name=CAL18945.1;Note=Similar to Salmonella typhimurium putative secretory apparatus component SsaG or SsaH TR:O30903 (EMBL:AF020808) (71 aa) fasta scores: E(): 6.1e-06%2C 33.8%25 id in 71 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF020808;product=putative type III secretion apparatus;protein_id=CAL18945.1;transl_table=11
AL590842.1	EMBL	gene	262718	262966	.	+	.	ID=gene261;Name=YPO0261;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0261
AL590842.1	EMBL	CDS	262718	262966	.	+	0	ID=cds255;Parent=gene261;Dbxref=InterPro:IPR010437,UniProtKB/TrEMBL:Q7CKS2,NCBI_GP:CAL18946.1;Name=CAL18946.1;Note=Similar to Salmonella typhimurium putative secretory apparatus component SsaH or SsaI TR:O30904 (EMBL:AF020808) (75 aa) fasta scores: E(): 2.8e-05%2C 37.7%25 id in 61 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF020808;product=putative type III secretion apparatus;protein_id=CAL18946.1;transl_table=11
AL590842.1	EMBL	gene	263064	263315	.	+	.	ID=gene262;Name=YPO0262;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0262
AL590842.1	EMBL	CDS	263064	263315	.	+	0	ID=cds256;Parent=gene262;Dbxref=GOA:Q74XK2,InterPro:IPR012670,InterPro:IPR021123,UniProtKB/TrEMBL:Q74XK2,NCBI_GP:CAL18947.1;Name=CAL18947.1;Note=Weakly similar to Salmonella typhimurium putative secretory apparatus component SsaI TR:Q9ZEF3 (EMBL:AJ224892) (82 aa) fasta scores: E(): 0.0041%2C 31.4%25 id in 70 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ224892;product=putative type III secretion apparatus;protein_id=CAL18947.1;transl_table=11
AL590842.1	EMBL	gene	263312	264043	.	+	.	ID=gene263;Name=YPO0263;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0263
AL590842.1	EMBL	CDS	263312	264043	.	+	0	ID=cds257;Parent=gene263;Dbxref=GOA:Q74XK1,InterPro:IPR003282,InterPro:IPR006182,UniProtKB/TrEMBL:Q74XK1,NCBI_GP:CAL18948.1;Name=CAL18948.1;Note=Similar to Salmonella typhimurium type III secretion system apparatus lipoprotein SsaJ SW:SSAJ_SALTY (P74852) (249 aa) fasta scores: E(): 0%2C 45.5%25 id in 253 aa;gbkey=CDS;product=type III secretion system apparatus lipoprotein;protein_id=CAL18948.1;transl_table=11
AL590842.1	EMBL	sequence_feature	263312	263896	.	+	.	ID=id644;Note=Pfam match to entry PF01514 YscJ_FliF%2C Secretory protein of YscJ/FliF family%2C score 240.10%2C E-value 3.1e-68;gbkey=misc_feature;inference=protein motif:PF01514
AL590842.1	EMBL	sequence_feature	263339	263371	.	+	.	ID=id645;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	263963	264031	.	+	.	ID=id646;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	264218	264811	.	+	.	ID=gene264;Name=YPO0264;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0264
AL590842.1	EMBL	CDS	264218	264811	.	+	0	ID=cds258;Parent=gene264;Dbxref=InterPro:IPR025292,UniProtKB/TrEMBL:Q0WK43,NCBI_GP:CAL18949.1;Name=CAL18949.1;Note=Similar to Escherichia coli L0051 TR:O85644 (EMBL:AF071034) (199 aa) fasta scores: E(): 0.011%2C 25.3%25 id in 174 aa. L0051 is located within a pathogenicity island;gbkey=CDS;inference=similar to sequence:INSDC:AF071034;product=conserved hypothetical protein;protein_id=CAL18949.1;transl_table=11
AL590842.1	EMBL	gene	264808	265455	.	+	.	ID=gene265;Name=YPO0265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0265
AL590842.1	EMBL	CDS	264808	265455	.	+	0	ID=cds259;Parent=gene265;Dbxref=InterPro:IPR009335,InterPro:IPR012842,UniProtKB/TrEMBL:Q0WK42,NCBI_GP:CAL18950.1;Name=CAL18950.1;Note=Similar to the C-terminus of the Salmonella typhimurium type III secretion system apparatus protein SsaK SW:SSAK_SALTY (P74853) (314 aa) fasta scores: E(): 1.2e-10%2C 30.1%25 id in 176 aa. Also similar over the entire range to Erwinia amylovora HrpE secretion protein TR:Q46622 (EMBL:U56662) (196 aa) fasta scores: E(): 0.73%2C 29.0%25 id in 186 aa;gbkey=CDS;inference=similar to sequence:INSDC:U56662;product=putative type III secretion system apparatus protein;protein_id=CAL18950.1;transl_table=11
AL590842.1	EMBL	gene	265448	267496	.	+	.	ID=gene266;Name=YPO0266;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0266
AL590842.1	EMBL	CDS	265448	267496	.	+	0	ID=cds260;Parent=gene266;Dbxref=GOA:Q0WK41,InterPro:IPR001712,InterPro:IPR006302,InterPro:IPR025505,UniProtKB/TrEMBL:Q0WK41,NCBI_GP:CAL18951.1;Name=CAL18951.1;Note=Similar to Salmonella typhimurium type III secretion system apparatus protein SsaV SW:SSAV_SALTY (P74856) (681 aa) fasta scores: E(): 0%2C 58.1%25 id in 670 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=secretion system apparatus protein;protein_id=CAL18951.1;transl_table=11
AL590842.1	EMBL	sequence_feature	265502	265555	.	+	.	ID=id647;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	265526	267442	.	+	.	ID=id648;Note=Pfam match to entry PF00771 FHIPEP%2C FHIPEP family%2Cscore 1053.30%2C E-value 0;gbkey=misc_feature;inference=protein motif:PF00771
AL590842.1	EMBL	sequence_feature	265565	265633	.	+	.	ID=id649;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	265652	265720	.	+	.	ID=id650;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	265778	265846	.	+	.	ID=id651;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	265862	265933	.	+	.	ID=id652;Note=PS00994 Bacterial export FHIPEP family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00994
AL590842.1	EMBL	sequence_feature	266048	266116	.	+	.	ID=id653;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	266174	266242	.	+	.	ID=id654;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	266303	266407	.	+	.	ID=id655;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	267483	268820	.	+	.	ID=gene267;Name=YPO0267;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0267
AL590842.1	EMBL	CDS	267483	268820	.	+	0	ID=cds261;Parent=gene267;Dbxref=GOA:Q7CKS1,InterPro:IPR000194,InterPro:IPR003593,InterPro:IPR004100,InterPro:IPR005714,InterPro:IPR020003,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CKS1,NCBI_GP:CAL18952.1;Name=CAL18952.1;Note=Similar to many secretion system proteins including: Salmonella typhimurium probable secretion system apparatus ATP synthase SsaN SW:SSAN_SALTY (P74857) (433 aa) fasta scores: E(): 0%2C 58.1%25 id in 432 aa%2C Pseudomonas aeruginosa ATP synthase in type III secretion system PA1697 TR:AAG05086 (EMBL:AE004596) (440 aa) fasta scores: E(): 0%2C55.8%25 id in 423 aa and to Bacillus subtilis flagellum-specific ATP synthase FliI SW:FLII_BACSU (P23445) (440 aa) fasta scores: E(): 0%2C 46.6%25 id in 423 aa. Note the overlap with the upstream CDS.;gbkey=CDS;inference=similar to sequence:INSDC:AE004596;product=putative type III secretion system ATP synthase;protein_id=CAL18952.1;transl_table=11
AL590842.1	EMBL	sequence_feature	267567	268562	.	+	.	ID=id656;Note=Pfam match to entry PF00006 ATP-synt_ab%2C ATP synthase alpha/beta family%2C score 412.50%2C E-value 3.8e-120;gbkey=misc_feature;inference=protein motif:PF00006
AL590842.1	EMBL	sequence_feature	267990	268013	.	+	.	ID=id657;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	268530	268559	.	+	.	ID=id658;Note=PS00152 ATP synthase alpha and beta subunits signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00152
AL590842.1	EMBL	gene	268817	269218	.	+	.	ID=gene268;Name=YPO0268;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0268
AL590842.1	EMBL	CDS	268817	269218	.	+	0	ID=cds262;Parent=gene268;Dbxref=UniProtKB/TrEMBL:Q7CKS0,NCBI_GP:CAL18953.1;Name=CAL18953.1;Note=Similar to Erwinia amylovora HrpO TR:Q46643 (EMBL:L25828) (148 aa) fasta scores: E(): 0.0017%2C 34.1%25 id in 129 aa;gbkey=CDS;inference=similar to sequence:INSDC:L25828;product=type III secretion system apparatus protein;protein_id=CAL18953.1;transl_table=11
AL590842.1	EMBL	gene	269382	269597	.	+	.	ID=gene269;Name=YPO0268a;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0268a
AL590842.1	EMBL	CDS	269382	269597	.	+	0	ID=cds263;Parent=gene269;Dbxref=UniProtKB/TrEMBL:Q0WK38,NCBI_GP:CAL18954.1;Name=CAL18954.1;Note=Similar to the N-terminal region of Neisseria meningitidis glycerol-3-phosphate dehydrogenase [NAD(P)+] GpsA or Nma0375 TR:Q9JWH0 (EMBL:AL162753) (329 aa) fasta scores: E(): 1.2%2C 32.759%25 id in 58 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL162753;product=hypothetical protein;protein_id=CAL18954.1;transl_table=11
AL590842.1	EMBL	gene	269617	270537	.	+	.	ID=gene270;Name=YPO0269;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0269
AL590842.1	EMBL	CDS	269617	270537	.	+	0	ID=cds264;Parent=gene270;Dbxref=GOA:Q0WK37,InterPro:IPR001172,InterPro:IPR001543,InterPro:IPR013385,UniProtKB/TrEMBL:Q0WK37,NCBI_GP:CAL18955.1;Name=CAL18955.1;Note=Similar to Salmonella typhimurium secretion system apparatus protein SsaQ SW:SSAQ_SALTY (P74860) (322 aa) fasta scores: E(): 1.1e-20%2C 26.3%25 id in 285 aa;gbkey=CDS;product=type III secretion system apparatus protein;protein_id=CAL18955.1;transl_table=11
AL590842.1	EMBL	sequence_feature	270286	270516	.	+	.	ID=id659;Note=Pfam match to entry PF01052 SpoA%2C Surface presentation of antigens (SPOA) protein%2C score 57.10%2CE-value 3.9e-13;gbkey=misc_feature;inference=protein motif:PF01052
AL590842.1	EMBL	gene	270664	271314	.	+	.	ID=gene271;Name=YPO0270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0270
AL590842.1	EMBL	CDS	270664	271314	.	+	0	ID=cds265;Parent=gene271;Dbxref=GOA:Q0WK36,InterPro:IPR005773,InterPro:IPR005838,UniProtKB/TrEMBL:Q0WK36,NCBI_GP:CAL18956.1;Name=CAL18956.1;Note=Similar to Salmonella typhimurium virulence protein YscR SW:YSCR_SALTY (P74890) (215 aa) fasta scores: E(): 0%2C59.9%25 id in 217 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative type III secretion apparatus protein;protein_id=CAL18956.1;transl_table=11
AL590842.1	EMBL	sequence_feature	270694	270762	.	+	.	ID=id660;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	270700	271299	.	+	.	ID=id661;Note=Pfam match to entry PF00813 FliP%2C FliP family%2C score 360.50%2C E-value 1.8e-104;gbkey=misc_feature;inference=protein motif:PF00813
AL590842.1	EMBL	sequence_feature	270820	270879	.	+	.	ID=id662;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	271093	271140	.	+	.	ID=id663;Note=PS01060 Flagella transport protein fliP family signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS01060
AL590842.1	EMBL	sequence_feature	271138	271206	.	+	.	ID=id664;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	271237	271275	.	+	.	ID=id665;Note=PS01061 Flagella transport protein fliP family signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS01061
AL590842.1	EMBL	sequence_feature	271249	271308	.	+	.	ID=id666;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	271311	271604	.	+	.	ID=gene272;Name=YPO0271;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0271
AL590842.1	EMBL	CDS	271311	271604	.	+	0	ID=cds266;Parent=gene272;Dbxref=GOA:Q74XJ2,InterPro:IPR002191,InterPro:IPR006306,UniProtKB/TrEMBL:Q74XJ2,NCBI_GP:CAL18957.1;Name=CAL18957.1;Note=Similar to Salmonella typhimurium secretion system apparatus protein SsaS SW:SSAS_SALTY (P74891) (88 aa) fasta scores: E(): 5.8e-16%2C 60.8%25 id in 79 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative type III secretion apparatus protein;protein_id=CAL18957.1;transl_table=11
AL590842.1	EMBL	sequence_feature	271344	271571	.	+	.	ID=id667;Note=Pfam match to entry PF01313 Bac_export_3%2C Bacterial export proteins%2C family 3%2C score 124.50%2C E-value 2e-33;gbkey=misc_feature;inference=protein motif:PF01313
AL590842.1	EMBL	sequence_feature	271371	271439	.	+	.	ID=id668;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	271497	271565	.	+	.	ID=id669;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	271606	272400	.	+	.	ID=gene273;Name=YPO0272;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0272
AL590842.1	EMBL	CDS	271606	272400	.	+	0	ID=cds267;Parent=gene273;Dbxref=GOA:Q7CKR9,InterPro:IPR002010,InterPro:IPR006304,UniProtKB/TrEMBL:Q7CKR9,NCBI_GP:CAL18958.1;Name=CAL18958.1;Note=Similar to Salmonella typhimurium secretion system apparatus protein SsaT SW:SSAT_SALTY (P96068) (259 aa) fasta scores: E(): 0%2C 51.3%25 id in 234 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative type III secretion apparatus protein;protein_id=CAL18958.1;transl_table=11
AL590842.1	EMBL	sequence_feature	271609	272358	.	+	.	ID=id670;Note=Pfam match to entry PF01311 Bac_export_1%2C Bacterial export proteins%2C family 1%2C score 242.10%2C E-value 7.8e-69;gbkey=misc_feature;inference=protein motif:PF01311
AL590842.1	EMBL	sequence_feature	271618	271686	.	+	.	ID=id671;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	271723	271791	.	+	.	ID=id672;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	271834	271902	.	+	.	ID=id673;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	271963	272031	.	+	.	ID=id674;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	272146	272214	.	+	.	ID=id675;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	272233	272301	.	+	.	ID=id676;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	272390	273457	.	+	.	ID=gene274;Name=YPO0273;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0273
AL590842.1	EMBL	CDS	272390	273457	.	+	0	ID=cds268;Parent=gene274;Dbxref=GOA:Q0WK33,InterPro:IPR006135,InterPro:IPR006307,InterPro:IPR029025,UniProtKB/TrEMBL:Q0WK33,NCBI_GP:CAL18959.1;Name=CAL18959.1;Note=Similar to Salmonella typhimurium secretion system apparatus protein SsaU SW:SSAU_SALTY (P96069) (352 aa) fasta scores: E(): 0%2C 48.6%25 id in 354 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative type III secretion apparatus protein;protein_id=CAL18959.1;transl_table=11
AL590842.1	EMBL	sequence_feature	272390	273415	.	+	.	ID=id677;Note=Pfam match to entry PF01312 Bac_export_2%2C FlhB HrpN YscU SpaS Family%2C score 454.30%2C E-value 1e-132;gbkey=misc_feature;inference=protein motif:PF01312
AL590842.1	EMBL	sequence_feature	272471	272539	.	+	.	ID=id678;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	272633	272701	.	+	.	ID=id679;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	272828	272896	.	+	.	ID=id680;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	272915	272983	.	+	.	ID=id681;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	273840	275054	.	+	.	ID=gene275;Name=YPO0274;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0274
AL590842.1	EMBL	CDS	273840	275054	.	+	0	ID=cds269;Parent=gene275;Dbxref=InterPro:IPR007272,UniProtKB/TrEMBL:Q7CKR8,NCBI_GP:CAL18960.1;Name=CAL18960.1;Note=Similar to Escherichia coli hypothetical 44.4 kDa protein in amyA-fliE intergenic region YedE SW:YEDE_ECOLI (P31064) (401 aa) fasta scores: E(): 0%2C 78.0%25 id in 400 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative integral membrane protein;protein_id=CAL18960.1;transl_table=11
AL590842.1	EMBL	sequence_feature	273900	273968	.	+	.	ID=id682;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	274080	274148	.	+	.	ID=id683;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	274185	274253	.	+	.	ID=id684;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	274281	274349	.	+	.	ID=id685;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	274428	274487	.	+	.	ID=id686;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	274500	274559	.	+	.	ID=id687;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	274617	274676	.	+	.	ID=id688;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	274689	274757	.	+	.	ID=id689;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	274794	274862	.	+	.	ID=id690;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	274920	274988	.	+	.	ID=id691;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	275051	275320	.	+	.	ID=gene276;Name=YPO0275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0275
AL590842.1	EMBL	CDS	275051	275320	.	+	0	ID=cds270;Parent=gene276;Dbxref=InterPro:IPR001455,UniProtKB/TrEMBL:Q7CKR7,NCBI_GP:CAL18961.1;Name=CAL18961.1;Note=Similar to Escherichia coli and Salmonella typhimurium hypothetical protein YedF SW:YEDF_ECOLI (P31065) (77 aa) fasta scores: E(): 1.5e-26%2C 94.6%25 id in 74 aa. Note alternative possible translational start site at codon 17;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL18961.1;transl_table=11
AL590842.1	EMBL	sequence_feature	275096	275317	.	+	.	ID=id692;Note=Pfam match to entry PF01206 UPF0033%2C Uncharacterized protein family UPF0033%2C score 146.60%2C E-value 4.5e-40;gbkey=misc_feature;inference=protein motif:PF01206
AL590842.1	EMBL	sequence_feature	275114	275152	.	+	.	ID=id693;Note=PS01148 Uncharacterized protein family UPF0033 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01148
AL590842.1	EMBL	gene	275398	276384	.	-	.	ID=gene277;Name=YPO0276;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0276
AL590842.1	EMBL	CDS	275398	276384	.	-	0	ID=cds271;Parent=gene277;Dbxref=GOA:Q7CKR6,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CKR6,NCBI_GP:CAL18962.1;Name=CAL18962.1;Note=Similar to several putative regulators e.g. Pseudomonas aeruginosa probable transcriptional regulator PA0056 TR:AAG03446 (EMBL:AE004445) (306 aa) fasta scores: E(): 1.2e-30%2C 32.4%25 id in 293 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004445;product=putative LysR-family transcriptional regulator;protein_id=CAL18962.1;transl_table=11
AL590842.1	EMBL	sequence_feature	275905	276324	.	-	.	ID=id694;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 106.50%2C E-value 5.1e-28;gbkey=misc_feature;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	276220	276285	.	-	.	ID=id695;Note=Predicted helix-turn-helix motif with score 1299 (+3.61 SD) at aa 34-55%2C sequence NSLSIAAHKLNITPSSTSRSLA;gbkey=misc_feature
AL590842.1	EMBL	gene	276551	277837	.	+	.	ID=gene278;Name=YPO0277;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0277
AL590842.1	EMBL	CDS	276551	277837	.	+	0	ID=cds272;Parent=gene278;Dbxref=GOA:Q7CKR5,UniProtKB/TrEMBL:Q7CKR5,NCBI_GP:CAL18963.1;Name=CAL18963.1;Note=Similar to many transport proteins e.g. Escherichia coli serine transporter SdaC SW:SDAC_ECOLI (P36559) (429 aa) fasta scores: E(): 6.7e-26%2C 25.2%25 id in 437 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative transmembrane transport protein;protein_id=CAL18963.1;transl_table=11
AL590842.1	EMBL	sequence_feature	276623	276691	.	+	.	ID=id696;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	276704	276772	.	+	.	ID=id697;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	276851	276919	.	+	.	ID=id698;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	276977	277045	.	+	.	ID=id699;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	277064	277120	.	+	.	ID=id700;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	277178	277246	.	+	.	ID=id701;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	277304	277372	.	+	.	ID=id702;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	277415	277483	.	+	.	ID=id703;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	277496	277564	.	+	.	ID=id704;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	277592	277648	.	+	.	ID=id705;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	277667	277735	.	+	.	ID=id706;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	277763	277831	.	+	.	ID=id707;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	277883	279064	.	+	.	ID=gene279;Name=metC;gbkey=Gene;gene=metC;gene_biotype=protein_coding;locus_tag=YPO0278
AL590842.1	EMBL	CDS	277883	279064	.	+	0	ID=cds273;Parent=gene279;Dbxref=GOA:Q7CKR4,InterPro:IPR000277,InterPro:IPR006233,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q7CKR4,NCBI_GP:CAL18964.1;Name=CAL18964.1;Note=Similar to Prokaryotic and Eukaryotic cystathionine beta-lyases including Escherichia coli MetC SW:METC_ECOLI (P06721) (395 aa) fasta scores: E(): 0%2C 42.6%25 id in 390 aa and Saccharomyces cerevisiae YFR055W SW:METC_YEAST (P43623) (340 aa) fasta scores: E(): 0%2C 64.1%25 id in 340 aa;gbkey=CDS;gene=metC;product=cystathionine beta-lyase;protein_id=CAL18964.1;transl_table=11
AL590842.1	EMBL	sequence_feature	277916	279043	.	+	.	ID=id708;Note=Pfam match to entry PF01053 Cys_Met_Meta_PP%2C Cys/Met metabolism PLP-dependent enzyme%2C score 321.90%2C E-value 7.5e-93;gbkey=misc_feature;gene=metC;inference=protein motif:PF01053
AL590842.1	EMBL	sequence_feature	278480	278524	.	+	.	ID=id709;Note=PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site.;gbkey=misc_feature;gene=metC;inference=protein motif:ProSite:PS00868
AL590842.1	EMBL	gene	279205	280005	.	-	.	ID=gene280;Name=hmuV;gbkey=Gene;gene=hmuV;gene_biotype=protein_coding;locus_tag=YPO0279
AL590842.1	EMBL	CDS	279205	280005	.	-	0	ID=cds274;Parent=gene280;Dbxref=GOA:Q56993,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR015863,InterPro:IPR017871,InterPro:IPR027417,PDB:4G1U,NCBI_GP:CAL18965.1;Name=CAL18965.1;Note=Previously sequenced Yersinia pestis hemin transport system ATP-binding protein HmuV SW:HMUV_YERPE (Q56993) (266 aa) fasta scores: E(): 0%2C 99.6%25 id in 266 aa;gbkey=CDS;gene=hmuV;product=hemin transport system ATP-binding protein;protein_id=CAL18965.1;transl_table=11
AL590842.1	EMBL	sequence_feature	279334	279897	.	-	.	ID=id710;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 146.30%2C E-value 5.6e-40;gbkey=misc_feature;gene=hmuV;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	279538	279582	.	-	.	ID=id711;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=hmuV;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	279853	279876	.	-	.	ID=id712;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=hmuV;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	279998	281002	.	-	.	ID=gene281;Name=hmuU;gbkey=Gene;gene=hmuU;gene_biotype=protein_coding;locus_tag=YPO0280
AL590842.1	EMBL	CDS	279998	281002	.	-	0	ID=cds275;Parent=gene281;Dbxref=GOA:Q56992,InterPro:IPR000522,InterPro:IPR029022,PDB:4G1U,NCBI_GP:CAL18966.1;Name=CAL18966.1;Note=Previously sequenced Yersinia pestis hemin transport system permease protein HmuU SW:HMUU_YERPE (Q56992) (334 aa) fasta scores: E(): 0%2C 100.0%25 id in 334 aa;gbkey=CDS;gene=hmuU;inference=protein motif:TMHMM:2.0;product=hemin transport system permease protein HmuU;protein_id=CAL18966.1;transl_table=11
AL590842.1	EMBL	sequence_feature	280022	280918	.	-	.	ID=id713;Note=Pfam match to entry PF01032 FecCD_family%2C FecCD transport family%2C score 491.60%2C E-value 6.3e-144;gbkey=misc_feature;gene=hmuU;inference=protein motif:PF01032
AL590842.1	EMBL	sequence_feature	280025	280081	.	-	.	ID=id714;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=hmuU;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	280220	280285	.	-	.	ID=id715;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=hmuU;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	280367	280432	.	-	.	ID=id716;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=hmuU;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	280493	280558	.	-	.	ID=id717;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=hmuU;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	280580	280645	.	-	.	ID=id718;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=hmuU;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	280676	280741	.	-	.	ID=id719;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=hmuU;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	280763	280828	.	-	.	ID=id720;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=hmuU;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	280910	280975	.	-	.	ID=id721;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=hmuU;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	280999	281838	.	-	.	ID=gene282;Name=hmuT;gbkey=Gene;gene=hmuT;gene_biotype=protein_coding;locus_tag=YPO0281
AL590842.1	EMBL	CDS	280999	281838	.	-	0	ID=cds276;Parent=gene282;Dbxref=GOA:Q56991,InterPro:IPR002491,PDB:3MD9,NCBI_GP:CAL18967.1;Name=CAL18967.1;Note=Previously sequenced Yersinia pestis hemin-binding periplasmic protein HmuT precursor SW:HMUT_YERPE (Q56991) (279 aa) fasta scores: E(): 0%2C 100.0%25 id in 279 aa;gbkey=CDS;gene=hmuT;product=hemin-binding periplasmic protein;protein_id=CAL18967.1;transl_table=11
AL590842.1	EMBL	sequence_feature	281074	281769	.	-	.	ID=id722;Note=Pfam match to entry PF01497 Peripla_BP_2%2CPeriplasmic binding protein%2C score 219.20%2C E-value 5.9e-62;gbkey=misc_feature;gene=hmuT;inference=protein motif:PF01497
AL590842.1	EMBL	gene	281835	282872	.	-	.	ID=gene283;Name=hmuS;gbkey=Gene;gene=hmuS;gene_biotype=protein_coding;locus_tag=YPO0282
AL590842.1	EMBL	CDS	281835	282872	.	-	0	ID=cds277;Parent=gene283;Dbxref=GOA:Q56990,InterPro:IPR007845,NCBI_GP:CAL18968.1;Name=CAL18968.1;Note=Previously sequenced Yersinia pestis hemin transport protein HmuS SW:HMUS_YERPE (Q56990) (345 aa) fasta scores: E(): 0%2C 100.0%25 id in 345 aa;gbkey=CDS;gene=hmuS;product=hemin transport protein;protein_id=CAL18968.1;transl_table=11
AL590842.1	EMBL	gene	282991	285021	.	-	.	ID=gene284;Name=hmuR;gbkey=Gene;gene=hmuR;gene_biotype=protein_coding;locus_tag=YPO0283
AL590842.1	EMBL	CDS	282991	285021	.	-	0	ID=cds278;Parent=gene284;Dbxref=GOA:Q56989,InterPro:IPR000531,InterPro:IPR010916,InterPro:IPR010949,InterPro:IPR011276,InterPro:IPR012910,NCBI_GP:CAL18969.1;Name=CAL18969.1;Note=Previously sequenced Yersinia pestis hemin receptor precursor HmuR SW:HMUR_YERPE (Q56989) (676 aa) fasta scores: E(): 0%2C 100.0%25 id in 676 aa;gbkey=CDS;gene=hmuR;product=hemin receptor precursor;protein_id=CAL18969.1;transl_table=11
AL590842.1	EMBL	sequence_feature	282994	283296	.	-	.	ID=id723;Note=Pfam match to entry PF00593 TonB_boxC%2C TonB dependent receptor C-terminal region%2C score 56.20%2C E-value 2.9e-14;gbkey=misc_feature;gene=hmuR;inference=protein motif:PF00593
AL590842.1	EMBL	sequence_feature	284869	285021	.	-	.	ID=id724;Note=PS00430 TonB-dependent receptor proteins signature 1.;gbkey=misc_feature;gene=hmuR;inference=protein motif:ProSite:PS00430
AL590842.1	EMBL	gene	285436	286086	.	-	.	ID=gene285;Name=YPO0284;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0284
AL590842.1	EMBL	CDS	285436	286086	.	-	0	ID=cds279;Parent=gene285;Dbxref=InterPro:IPR016040,UniProtKB/TrEMBL:Q56987,NCBI_GP:CAL18970.1;Name=CAL18970.1;Note=Previously sequenced as Yersinia pestis hypothetical 23.2 kDa protein TR:Q56987 (EMBL:U60647) (216 aa) fasta scores: E(): 0%2C 100.0%25 id in 216 aa. Also similar to Shigella dysenteriae hypothetical 21.8 kDa protein ShuY TR:O70016 (EMBL:U64516) (207 aa) fasta scores: E(): 0%2C55.9%25 id in 211 aa;gbkey=CDS;inference=similar to sequence:INSDC:U64516;product=conserved hypothetical protein;protein_id=CAL18970.1;transl_table=11
AL590842.1	EMBL	gene	286120	286665	.	-	.	ID=gene286;Name=YPO0285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0285
AL590842.1	EMBL	CDS	286120	286665	.	-	0	ID=cds280;Parent=gene286;Dbxref=InterPro:IPR010413,UniProtKB/TrEMBL:Q7CKR1,NCBI_GP:CAL18971.1;Name=CAL18971.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q56986 (EMBL:U60647) (162 aa) fasta scores: E(): 0%2C 98.8%25 id in 162 aa. Also similar to Shigella dysenteriae hypothetical protein ShuX TR:O70017 (EMBL:U64516) (164 aa) fasta scores: E(): 0%2C 58.1%25 id in 160 aa. Note alternative possible translational start site at codon 13;gbkey=CDS;inference=similar to sequence:INSDC:U64516;product=conserved hypothetical protein;protein_id=CAL18971.1;transl_table=11
AL590842.1	EMBL	gene	286662	287975	.	-	.	ID=gene287;Name=YPO0286;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0286
AL590842.1	EMBL	CDS	286662	287975	.	-	0	ID=cds281;Parent=gene287;Dbxref=GOA:Q7CKR0,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR023404,InterPro:IPR026332,UniProtKB/TrEMBL:Q7CKR0,NCBI_GP:CAL18972.1;Name=CAL18972.1;Note=Similar to many coproporphyrinogen III oxidases including: Vibrio cholerae oxygen-independent coproporphyrinogen III oxidase VCA0909 TR:Q9KL39 (EMBL:AE004418) (455 aa) fasta scores: E(): 0%2C 37.9%25 id in 428 aa and to Escherichia coli oxygen-independent coproporphyrinogen III oxidase HemN SW:HEMN_ECOLI (P32131) (457 aa) fasta scores: E(): 4.7e-19%2C 26.9%25 id in 420 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004418;product=putative coproporphyrinogen III oxidase;protein_id=CAL18972.1;transl_table=11
AL590842.1	EMBL	sequence_feature	286944	287675	.	-	.	ID=id725;Note=Pfam match to entry PF02473 Coprogen_an_ox%2C %2C score -16.40%2C E-value 2.9e-13;gbkey=misc_feature;inference=protein motif:PF02473
AL590842.1	EMBL	gene	288316	289116	.	-	.	ID=gene288;Name=YPO0287;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0287
AL590842.1	EMBL	CDS	288316	289116	.	-	0	ID=cds282;Parent=gene288;Dbxref=GOA:Q7CKQ9,InterPro:IPR003171,InterPro:IPR029041,UniProtKB/TrEMBL:Q7CKQ9,NCBI_GP:CAL18973.1;Name=CAL18973.1;Note=Similar to Haemophilus influenzae 5%2C10-methylenetetrahydrofolate reductase MetF SW:METF_HAEIN (P45208) (292 aa) fasta scores: E(): 4.6e-14%2C 26.8%25 id in 269 aa%3B~deleted EC_number 1.7.99.5;gbkey=CDS;product=putative methylenetetrahydrofolate reductase;protein_id=CAL18973.1;transl_table=11
AL590842.1	EMBL	sequence_feature	288319	289116	.	-	.	ID=id726;Note=Pfam match to entry PF02219 MTHFR%2CMethylenetetrahydrofolate reductase%2C score -79.00%2C E-value 8.1e-07;gbkey=misc_feature;inference=protein motif:PF02219
AL590842.1	EMBL	gene	289431	289919	.	-	.	ID=gene289;Name=YPO0288;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0288
AL590842.1	EMBL	CDS	289431	289919	.	-	0	ID=cds283;Parent=gene289;Dbxref=InterPro:IPR011233,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CKQ8,NCBI_GP:CAL18974.1;Name=CAL18974.1;Note=Similar to Escherichia coli O157:H7 hypothetical protein TerW TR:AAG55309 (EMBL:AE005273) (155 aa) fasta scores: E(): 2.5e-24%2C 52.3%25 id in 149 aa%2C and to Serratia marcescens TerW TR:P75010 (EMBL:U49054) (155 aa) fasta scores: E(): 5.5e-24%2C 52.3%25 id in 149 aa;gbkey=CDS;inference=similar to sequence:INSDC:U49054;product=putative exported protein;protein_id=CAL18974.1;transl_table=11
AL590842.1	EMBL	gene	290316	291275	.	-	.	ID=gene290;Name=YPO0289;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0289
AL590842.1	EMBL	CDS	290316	291275	.	-	0	ID=cds284;Parent=gene290;Dbxref=GOA:Q7CKQ7,InterPro:IPR011206,InterPro:IPR015813,UniProtKB/TrEMBL:Q7CKQ7,NCBI_GP:CAL18975.1;Name=CAL18975.1;Note=Similar to several proteins of undefined function including: Deinococcus radiodurans hypothetical protein DR2219 TR:Q9RSA7 (EMBL:AE002054) (310 aa) fasta scores: E(): 0%2C 40.5%25 id in 309 aa and Streptomyces coelicolor putative ATP/GTP-binding protein SCC8A.21c TR:Q9KY27 (EMBL:AL356892) (388 aa) fasta scores: E(): 5.7e-14%2C 32.6%25 id in 344 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL356892;product=putative ATP/GTP-binding protein;protein_id=CAL18975.1;transl_table=11
AL590842.1	EMBL	sequence_feature	290565	290588	.	-	.	ID=id727;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	291275	292354	.	-	.	ID=gene291;Name=YPO0290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0290
AL590842.1	EMBL	CDS	291275	292354	.	-	0	ID=cds285;Parent=gene291;Dbxref=InterPro:IPR011215,InterPro:IPR028157,UniProtKB/TrEMBL:Q7CKQ6,NCBI_GP:CAL18976.1;Name=CAL18976.1;Note=Similar to Deinococcus radiodurans hypothetical protein DR2218 TR:Q9RSA8 (EMBL:AE002054) (353 aa) fasta scores: E(): 6.2e-23%2C 35.2%25 id in 338 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE002054;product=conserved hypothetical protein;protein_id=CAL18976.1;transl_table=11
AL590842.1	EMBL	gene	292347	293159	.	-	.	ID=gene292;Name=YPO0291;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0291
AL590842.1	EMBL	CDS	292347	293159	.	-	0	ID=cds286;Parent=gene292;Dbxref=InterPro:IPR023214,InterPro:IPR024197,UniProtKB/TrEMBL:Q0WK15,NCBI_GP:CAL18977.1;Name=CAL18977.1;Note=Similar to Deinococcus radiodurans hypothetical protein DR2215 TR:Q9RSB0 (EMBL:AE002054) (260 aa) fasta scores: E(): 3.3e-21%2C 36.1%25 id in 255 aa. Also similar to the C-terminus of Serratia marcescens plasmid hypothetical protein TR:P95795 (EMBL:U59239) (238 aa) fasta scores: E(): 3.3e-29%2C 87.1%25 id in 93 aa;gbkey=CDS;inference=similar to sequence:INSDC:U59239;product=conserved hypothetical protein;protein_id=CAL18977.1;transl_table=11
AL590842.1	EMBL	gene	293152	294288	.	-	.	ID=gene293;Name=YPO0292;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0292
AL590842.1	EMBL	CDS	293152	294288	.	-	0	ID=cds287;Parent=gene293;Dbxref=InterPro:IPR011214,InterPro:IPR022537,InterPro:IPR029057,UniProtKB/TrEMBL:Q7CKQ5,NCBI_GP:CAL18978.1;Name=CAL18978.1;Note=Similar to Deinococcus radiodurans conserved hypothetical protein DR2214 TR:Q9RSB1 (EMBL:AE002054) (371 aa) fasta scores: E(): 0%2C 40.7%25 id in 369 aa. The N-terminus of this protein is similar to Serratia marcescens plasmid hypothetical protein TR:P95796 (EMBL:U59239) (197 aa) fasta scores: E(): 0%2C 70.4%25 id in 189 aa%2C and to;gbkey=CDS;inference=similar to sequence:INSDC:U59239;product=conserved hypothetical protein;protein_id=CAL18978.1;transl_table=11
AL590842.1	EMBL	gene	294300	295361	.	-	.	ID=gene294;Name=YPO0293;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0293
AL590842.1	EMBL	CDS	294300	295361	.	-	0	ID=cds288;Parent=gene294;Dbxref=GOA:Q7CKQ4,InterPro:IPR011226,InterPro:IPR011761,InterPro:IPR013816,UniProtKB/TrEMBL:Q7CKQ4,NCBI_GP:CAL18979.1;Name=CAL18979.1;Note=Similar to Streptomyces coelicolor hypothetical 41.6 kDa protein SC5A7.21c TR:O88027 (EMBL:AL031107) (388 aa) fasta scores: E(): 1.1e-14%2C 27.4%25 id in 328 aa. In addition the C-terminus of the product of this CDS is similar to Serratia marcescens plasmid hypothetical protein TR:P95797 (EMBL:U59239) (173 aa) fasta scores: E(): 0%2C 56.1%25 id in 171 aa;gbkey=CDS;inference=similar to sequence:INSDC:U59239;product=conserved hypothetical protein;protein_id=CAL18979.1;transl_table=11
AL590842.1	EMBL	gene	295637	296230	.	+	.	ID=gene295;Name=terZ;gbkey=Gene;gene=terZ;gene_biotype=protein_coding;locus_tag=YPO0294
AL590842.1	EMBL	CDS	295637	296230	.	+	0	ID=cds289;Parent=gene295;Dbxref=GOA:Q0WK12,InterPro:IPR003325,UniProtKB/TrEMBL:Q0WK12,NCBI_GP:CAL18980.1;Name=CAL18980.1;Note=Similar to Serratia marcescens tellurium resistance protein TerZ SW:TERZ_SERMA (Q52353) (193 aa) fasta scores: E(): 0%2C 76.6%25 id in 197 aa and to Escherichia coli O157:H7 putative tellurium resistance protein TR:Q9LAN8 (EMBL:AF126104) (192 aa) fasta scores: E(): 9.9e-16%2C 40.2%25 id in 189 aa;gbkey=CDS;gene=terZ;inference=similar to sequence:INSDC:AF126104;product=tellurium resistance protein;protein_id=CAL18980.1;transl_table=11
AL590842.1	EMBL	sequence_feature	295841	296212	.	+	.	ID=id728;Note=Pfam match to entry PF02342 TerD%2C %2C score 183.50%2CE-value 3.4e-51;gbkey=misc_feature;gene=terZ;inference=protein motif:PF02342
AL590842.1	EMBL	gene	296362	297414	.	+	.	ID=gene296;Name=terA;gbkey=Gene;gene=terA;gene_biotype=protein_coding;locus_tag=YPO0295
AL590842.1	EMBL	CDS	296362	297414	.	+	0	ID=cds290;Parent=gene296;Dbxref=GOA:Q0WK11,InterPro:IPR003325,InterPro:IPR017115,UniProtKB/TrEMBL:Q0WK11,NCBI_GP:CAL18981.1;Name=CAL18981.1;Note=Similar to Serratia marcescens tellurite resistance protein TerA TR:Q52354 (EMBL:U59239) (341 aa) fasta scores: E(): 0%2C 70.0%25 id in 350 aa;gbkey=CDS;gene=terA;inference=similar to sequence:INSDC:U59239;product=putative tellurite resistance protein;protein_id=CAL18981.1;transl_table=11
AL590842.1	EMBL	sequence_feature	296362	296709	.	+	.	ID=id729;Note=Pfam match to entry PF02342 TerD%2C %2C score 118.20%2CE-value 1.6e-31;gbkey=misc_feature;gene=terA;inference=protein motif:PF02342
AL590842.1	EMBL	sequence_feature	297022	297381	.	+	.	ID=id730;Note=Pfam match to entry PF02342 TerD%2C %2C score 80.60%2CE-value 3.1e-20;gbkey=misc_feature;gene=terA;inference=protein motif:PF02342
AL590842.1	EMBL	gene	297447	297902	.	+	.	ID=gene297;Name=terB;gbkey=Gene;gene=terB;gene_biotype=protein_coding;locus_tag=YPO0296
AL590842.1	EMBL	CDS	297447	297902	.	+	0	ID=cds291;Parent=gene297;Dbxref=InterPro:IPR007791,InterPro:IPR029024,UniProtKB/TrEMBL:Q7CKQ3,NCBI_GP:CAL18982.1;Name=CAL18982.1;Note=Similar to Serratia marcescens tellurite resistance protein TerB TR:Q52355 (EMBL:U59239) (151 aa) fasta scores: E(): 0%2C 71.5%25 id in 151 aa;gbkey=CDS;gene=terB;inference=similar to sequence:INSDC:U59239;product=tellurite resistance protein;protein_id=CAL18982.1;transl_table=11
AL590842.1	EMBL	gene	297924	298961	.	+	.	ID=gene298;Name=terC;gbkey=Gene;gene=terC;gene_biotype=protein_coding;locus_tag=YPO0297
AL590842.1	EMBL	CDS	297924	298961	.	+	0	ID=cds292;Parent=gene298;Dbxref=GOA:Q74XG9,InterPro:IPR005496,InterPro:IPR022369,UniProtKB/TrEMBL:Q74XG9,NCBI_GP:CAL18983.1;Name=CAL18983.1;Note=Similar to Serratia marcescens tellurium resistance protein TerC SW:TERC_SERMA (Q52356) (346 aa) fasta scores: E(): 0%2C 83.3%25 id in 342 aa%2C and to Escherichia coli O157:H7 putative tellurium resistance protein D TR:Q9LAN7 (EMBL:AF126104) (89 aa) fasta scores: E(): 5.4e-21%2C 82.3%25 id in 79 aa;gbkey=CDS;gene=terC;inference=similar to sequence:INSDC:AF126104;product=tellurium resistance protein;protein_id=CAL18983.1;transl_table=11
AL590842.1	EMBL	sequence_feature	297951	298019	.	+	.	ID=id731;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=terC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	298053	298121	.	+	.	ID=id732;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=terC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	298164	298223	.	+	.	ID=id733;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=terC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	298242	298310	.	+	.	ID=id734;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=terC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	298320	298379	.	+	.	ID=id735;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=terC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	298566	298634	.	+	.	ID=id736;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=terC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	298677	298739	.	+	.	ID=id737;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=terC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	298758	298826	.	+	.	ID=id738;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=terC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	298869	298928	.	+	.	ID=id739;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=terC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	299025	299603	.	+	.	ID=gene299;Name=terD;gbkey=Gene;gene=terD;gene_biotype=protein_coding;locus_tag=YPO0298
AL590842.1	EMBL	CDS	299025	299603	.	+	0	ID=cds293;Parent=gene299;Dbxref=GOA:Q0WK08,InterPro:IPR003325,UniProtKB/TrEMBL:Q0WK08,NCBI_GP:CAL18984.1;Name=CAL18984.1;Note=Similar to Serratia marcescens tellurium resistance protein TerD SW:TERD_SERMA (Q52357) (192 aa) fasta scores: E(): 0%2C 86.5%25 id in 192 aa and Escherichia coli O157:H7 putative tellurium resistance protein TR:Q9LAN8 (EMBL:AF126104) (192 aa) fasta scores: E(): 0%2C 85.9%25 id in 192 aa;gbkey=CDS;gene=terD;inference=similar to sequence:INSDC:AF126104;product=tellurium resistance protein;protein_id=CAL18984.1;transl_table=11
AL590842.1	EMBL	sequence_feature	299202	299588	.	+	.	ID=id740;Note=Pfam match to entry PF02342 TerD%2C %2C score 249.30%2CE-value 5.4e-71;gbkey=misc_feature;gene=terD;inference=protein motif:PF02342
AL590842.1	EMBL	gene	299787	300362	.	+	.	ID=gene300;Name=terE;gbkey=Gene;gene=terE;gene_biotype=protein_coding;locus_tag=YPO0299
AL590842.1	EMBL	CDS	299787	300362	.	+	0	ID=cds294;Parent=gene300;Dbxref=GOA:Q7CKQ2,InterPro:IPR003325,UniProtKB/TrEMBL:Q7CKQ2,NCBI_GP:CAL18985.1;Name=CAL18985.1;Note=Similar to Serratia marcescens tellurium resistance protein TerE SW:TERE_SERMA (Q52358) (191 aa) fasta scores: E(): 0%2C 84.3%25 id in 191 aa and to Escherichia coli O157:H7 putative tellurium resistance protein C%2C TlrC TR:Q9LAN8 (EMBL:AF126104) (192 aa) fasta scores: E(): 0%2C 64.7%25 id in 190 aa;gbkey=CDS;gene=terE;inference=similar to sequence:INSDC:AF126104;product=tellurium resistance protein;protein_id=CAL18985.1;transl_table=11
AL590842.1	EMBL	sequence_feature	299964	300350	.	+	.	ID=id741;Note=Pfam match to entry PF02342 TerD%2C %2C score 254.90%2CE-value 1.1e-72;gbkey=misc_feature;gene=terE;inference=protein motif:PF02342
AL590842.1	EMBL	repeat_region	300409	301120	.	+	.	ID=id742;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	300554	301012	.	+	.	ID=gene301;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO0300
AL590842.1	EMBL	CDS	300554	301012	.	+	0	ID=cds295;Parent=gene301;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL18986.1;Name=CAL18986.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL18986.1;transl_table=11
AL590842.1	EMBL	sequence_feature	300608	300919	.	+	.	ID=id743;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	301786	302424	.	+	.	ID=gene302;Name=YPO0301;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0301
AL590842.1	EMBL	CDS	301786	302424	.	+	0	ID=cds296;Parent=gene302;Dbxref=InterPro:IPR010546,UniProtKB/TrEMBL:Q7CKQ1,NCBI_GP:CAL18987.1;Name=CAL18987.1;Note=Weakly similar to Escherichia coli protein GltF SW:GLTF_ECOLI (P28721) (254 aa) fasta scores: E(): 0.0025%2C25.5%25 id in 251 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL18987.1;transl_table=11
AL590842.1	EMBL	gene	302675	305053	.	+	.	ID=gene303;Name=YPO0302;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0302
AL590842.1	EMBL	CDS	302675	305053	.	+	0	ID=cds297;Parent=gene303;Dbxref=GOA:Q7CKQ0,InterPro:IPR000015,InterPro:IPR018030,InterPro:IPR025885,InterPro:IPR025949,UniProtKB/TrEMBL:Q7CKQ0,NCBI_GP:CAL18988.1;Name=CAL18988.1;Note=Similar to several membrane usher proteins including: Salmonella enteritidis SefC SW:SEFC_SALEN (P33388) (814 aa) fasta scores: E(): 7.7e-22%2C 25.1%25 id in 804 aa and to Escherichia coli YhcD SW:YHCD_ECOLI (P45420) (793 aa) fasta scores: E(): 0%2C 27.4%25 id in 795 aa.;gbkey=CDS;product=putative outer membrane fimbrial usher protein;protein_id=CAL18988.1;transl_table=11
AL590842.1	EMBL	sequence_feature	302765	303631	.	+	.	ID=id744;Note=Pfam match to entry PF00577 Usher%2C Fimbrial Usher proteins%2C score 170.90%2C E-value 2.1e-47;gbkey=misc_feature;inference=protein motif:PF00577
AL590842.1	EMBL	sequence_feature	303524	303556	.	+	.	ID=id745;Note=PS01151 Fimbrial biogenesis outer membrane usher protein signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01151
AL590842.1	EMBL	sequence_feature	304100	304999	.	+	.	ID=id746;Note=Pfam match to entry PF00577 Usher%2C Fimbrial Usher proteins%2C score 63.20%2C E-value 5.1e-17;gbkey=misc_feature;inference=protein motif:PF00577
AL590842.1	EMBL	gene	305125	305868	.	+	.	ID=gene304;Name=YPO0303;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0303
AL590842.1	EMBL	CDS	305125	305868	.	+	0	ID=cds298;Parent=gene304;Dbxref=GOA:Q7CKP9,InterPro:IPR008962,InterPro:IPR016147,InterPro:IPR016148,UniProtKB/TrEMBL:Q7CKP9,NCBI_GP:CAL18989.1;Name=CAL18989.1;Note=Similar to Escherichia coli hypothetical 25.3 kDa fimbrial chaperone YhcA SW:YHCA_ECOLI (P28722) (224 aa) fasta scores: E(): 1.1e-17%2C 32.6%25 id in 190 aa;gbkey=CDS;product=putative fimbrial chaperone;protein_id=CAL18989.1;transl_table=11
AL590842.1	EMBL	sequence_feature	305194	305262	.	+	.	ID=id747;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	305876	306133	.	+	.	ID=gene305;Name=YPO0304;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0304
AL590842.1	EMBL	CDS	305876	306133	.	+	0	ID=cds299;Parent=gene305;Dbxref=InterPro:IPR016196,UniProtKB/TrEMBL:Q7CKP8,NCBI_GP:CAL18990.1;Name=CAL18990.1;Note=No significant database hits;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL18990.1;transl_table=11
AL590842.1	EMBL	sequence_feature	305954	306022	.	+	.	ID=id748;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	306059	306127	.	+	.	ID=id749;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	307245	308645	.	+	.	ID=gene306;Name=YPO0306;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0306
AL590842.1	EMBL	CDS	307245	308645	.	+	0	ID=cds300;Parent=gene306;Dbxref=GOA:Q7CKP7,InterPro:IPR007087,UniProtKB/TrEMBL:Q7CKP7,NCBI_GP:CAL18991.1;Name=CAL18991.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL18991.1;transl_table=11
AL590842.1	EMBL	gene	309068	309322	.	+	.	ID=gene307;Name=YPO0307;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0307
AL590842.1	EMBL	CDS	309068	309322	.	+	0	ID=cds301;Parent=gene307;Dbxref=UniProtKB/TrEMBL:Q74XG1,NCBI_GP:CAL18992.1;Name=CAL18992.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL18992.1;transl_table=11
AL590842.1	EMBL	gene	309654	311711	.	+	.	ID=gene308;Name=YPO0308;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0308
AL590842.1	EMBL	CDS	309654	311711	.	+	0	ID=cds302;Parent=gene308;Dbxref=GOA:Q7CKP6,InterPro:IPR003610,InterPro:IPR003961,InterPro:IPR006094,InterPro:IPR012951,InterPro:IPR013783,InterPro:IPR016166,InterPro:IPR016167,UniProtKB/TrEMBL:Q7CKP6,NCBI_GP:CAL18993.1;Name=CAL18993.1;Note=Similar to the eukaryotic Chondrus crispus (red algae) hexose oxidase TR:P93762 (EMBL:U89770) (546 aa) fasta scores: E(): 0%2C 33.8%25 id in 551 aa. Note the C-terminus of this protein is similar to many chitinases e.g. Serratia marcescens ChiC TR:Q9WXD3 (EMBL:AB019238) (480 aa) fasta scores: E(): 2.1e-15%2C 43.1%25 id in 144 aa;gbkey=CDS;inference=similar to sequence:INSDC:U89770;product=putative oxidoreductase;protein_id=CAL18993.1;transl_table=11
AL590842.1	EMBL	sequence_feature	311277	311516	.	+	.	ID=id750;Note=Pfam match to entry PF00041 fn3%2C Fibronectin type III domain%2C score 38.90%2C E-value 1.1e-07;gbkey=misc_feature;inference=protein motif:PF00041
AL590842.1	EMBL	gene	312055	315771	.	-	.	ID=gene309;Name=YPO0309;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0309
AL590842.1	EMBL	CDS	312055	315771	.	-	0	ID=cds303;Parent=gene309;Dbxref=GOA:Q0WJZ8,InterPro:IPR005546,InterPro:IPR006315,InterPro:IPR011050,InterPro:IPR012332,UniProtKB/TrEMBL:Q0WJZ8,NCBI_GP:CAL18994.1;Name=CAL18994.1;Note=Similar to Bordetella pertussis putative autotransporter protein%2C BapA TR:CAC14165 (EMBL:AJ277632) (903 aa) fasta scores: E(): 0%2C 34.0%25 id in 915 aa. Also similar in part to Salmonella typhimurium ShdA TR:Q9XCJ4 (EMBL:AF140550) (2035 aa) fasta scores: E(): 1.1e-16%2C 24.7%25 id in 1382 aa. Also highly similar to Y. pestis CDSs YPO1672 and YPO0765;gbkey=CDS;inference=similar to sequence:INSDC:AJ277632;product=putative exported protein;protein_id=CAL18994.1;transl_table=11
AL590842.1	EMBL	gene	316696	317220	.	+	.	ID=gene310;Name=ubiC;gbkey=Gene;gene=ubiC;gene_biotype=protein_coding;locus_tag=YPO0310
AL590842.1	EMBL	CDS	316696	317220	.	+	0	ID=cds304;Parent=gene310;Dbxref=GOA:Q8ZJ20,InterPro:IPR007440,InterPro:IPR028978,NCBI_GP:CAL18995.1;Name=CAL18995.1;Note=Similar to Escherichia coli chorismate--pyruvate lyase UbiC SW:UBIC_ECOLI (P26602) (164 aa) fasta scores: E(): 0%2C 55.7%25 id in 158 aa;gbkey=CDS;gene=ubiC;product=putative chorismate--pyruvate lyase;protein_id=CAL18995.1;transl_table=11
AL590842.1	EMBL	gene	317386	318252	.	+	.	ID=gene311;Name=b4040;gbkey=Gene;gene=b4040;gene_biotype=protein_coding;gene_synonym=cyr,ubiA;locus_tag=YPO0311
AL590842.1	EMBL	CDS	317386	318252	.	+	0	ID=cds305;Parent=gene311;Dbxref=GOA:Q7CKP5,InterPro:IPR000537,InterPro:IPR006370,NCBI_GP:CAL18996.1;Name=CAL18996.1;Note=Similar to Escherichia coli 4-hydroxybenzoate octaprenyltransferase UbiA SW:UBIA_ECOLI (P26601) (290 aa) fasta scores: E(): 0%2C 73.3%25 id in 288 aa;gbkey=CDS;gene=b4040;inference=protein motif:TMHMM:2.0;product=4-hydroxybenzoate octaprenyltransferase;protein_id=CAL18996.1;transl_table=11
AL590842.1	EMBL	sequence_feature	317446	317499	.	+	.	ID=id751;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4040;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	317458	318249	.	+	.	ID=id752;Note=Pfam match to entry PF01040 UbiA%2C UbiA prenyltransferase family%2C score 341.20%2C E-value 1.2e-98;gbkey=misc_feature;gene=b4040;inference=protein motif:PF01040
AL590842.1	EMBL	sequence_feature	317527	317595	.	+	.	ID=id753;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4040;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	317584	317652	.	+	.	ID=id754;Note=PS00943 UbiA prenyltransferase family signature.;gbkey=misc_feature;gene=b4040;inference=protein motif:ProSite:PS00943
AL590842.1	EMBL	sequence_feature	317677	317745	.	+	.	ID=id755;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4040;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	317803	317871	.	+	.	ID=id756;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4040;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	317884	317952	.	+	.	ID=id757;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4040;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	318064	318132	.	+	.	ID=id758;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4040;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	318193	318246	.	+	.	ID=id759;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4040;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	318433	320910	.	-	.	ID=gene312;Name=b4041;gbkey=Gene;gene=b4041;gene_biotype=protein_coding;gene_synonym=plsB;locus_tag=YPO0312
AL590842.1	EMBL	CDS	318433	320910	.	-	0	ID=cds306;Parent=gene312;Dbxref=GOA:Q8ZJ18,InterPro:IPR002123,InterPro:IPR022284,InterPro:IPR028354,NCBI_GP:CAL18997.1;Name=CAL18997.1;Note=Similar to Escherichia coli glycerol-3-phosphate acyltransferase PlsB SW:PLSB_ECOLI (P00482) (806 aa) fasta scores: E(): 0%2C 80.2%25 id in 802 aa;gbkey=CDS;gene=b4041;product=glycerol-3-phosphate acyltransferase;protein_id=CAL18997.1;transl_table=11
AL590842.1	EMBL	sequence_feature	319462	320043	.	-	.	ID=id760;Note=Pfam match to entry PF01553 Acyltransferase%2CAcyltransferase%2C score 145.10%2C E-value 1.3e-39;gbkey=misc_feature;gene=b4041;inference=protein motif:PF01553
AL590842.1	EMBL	gene	321038	321409	.	+	.	ID=gene313;Name=b4042;gbkey=Gene;gene=b4042;gene_biotype=protein_coding;gene_synonym=dgkA;locus_tag=YPO0313
AL590842.1	EMBL	CDS	321038	321409	.	+	0	ID=cds307;Parent=gene313;Dbxref=GOA:Q7CKP4,InterPro:IPR000829,UniProtKB/TrEMBL:Q7CKP4,NCBI_GP:CAL18998.1;Name=CAL18998.1;Note=Similar to Escherichia coli diacylglycerol kinase DgkA SW:KDGL_ECOLI (P00556) (121 aa) fasta scores: E(): 0%2C68.1%25 id in 119 aa;gbkey=CDS;gene=b4042;inference=protein motif:TMHMM:2.0;product=diacylglycerol kinase;protein_id=CAL18998.1;transl_table=11
AL590842.1	EMBL	sequence_feature	321059	321394	.	+	.	ID=id761;Note=Pfam match to entry PF01219 DAGK_prokar%2C Prokaryotic diacylglycerol kinase%2C score 164.20%2C E-value 2.2e-45;gbkey=misc_feature;gene=b4042;inference=protein motif:PF01219
AL590842.1	EMBL	sequence_feature	321146	321214	.	+	.	ID=id762;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4042;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	321245	321280	.	+	.	ID=id763;Note=PS01069 Prokaryotic diacylglycerol kinase signature.;gbkey=misc_feature;gene=b4042;inference=protein motif:ProSite:PS01069
AL590842.1	EMBL	sequence_feature	321335	321403	.	+	.	ID=id764;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4042;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	321534	322142	.	+	.	ID=gene314;Name=b4043;gbkey=Gene;gene=b4043;gene_biotype=protein_coding;gene_synonym=exrA,lexA,spr,tsl,umuA;locus_tag=YPO0314
AL590842.1	EMBL	CDS	321534	322142	.	+	0	ID=cds308;Parent=gene314;Dbxref=GOA:Q8ZJ16,InterPro:IPR006197,InterPro:IPR006199,InterPro:IPR006200,InterPro:IPR011991,InterPro:IPR015927,InterPro:IPR019759,InterPro:IPR028360,NCBI_GP:CAL18999.1;Name=CAL18999.1;Note=Similar to Escherichia coli repressor LexA SW:LEXA_ECOLI (P03033) (202 aa) fasta scores: E(): 0%2C 91.6%25 id in 202 aa;gbkey=CDS;gene=b4043;product=LexA repressor;protein_id=CAL18999.1;transl_table=11
AL590842.1	EMBL	sequence_feature	321534	321728	.	+	.	ID=id765;Note=Pfam match to entry PF01726 LexA_DNA_bind%2C LexA DNA binding domain%2C score 135.90%2C E-value 7.1e-37;gbkey=misc_feature;gene=b4043;inference=protein motif:PF01726
AL590842.1	EMBL	sequence_feature	321729	322082	.	+	.	ID=id766;Note=Pfam match to entry PF00717 Peptidase_S24%2C Peptidase family S24%2C score 200.10%2C E-value 3.5e-56;gbkey=misc_feature;gene=b4043;inference=protein motif:PF00717
AL590842.1	EMBL	repeat_region	322219	322253	.	+	.	ID=id767;Note=contains 5x TTTTTGC repeats;gbkey=repeat_region
AL590842.1	EMBL	gene	322302	322811	.	-	.	ID=gene315;Name=YPO0315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0315
AL590842.1	EMBL	CDS	322302	322811	.	-	0	ID=cds309;Parent=gene315;Dbxref=GOA:Q0WJZ2,InterPro:IPR002481,InterPro:IPR011991,UniProtKB/TrEMBL:Q0WJZ2,NCBI_GP:CAL19000.1;Name=CAL19000.1;Note=Similar to Escherichia coli zinc uptake regulation protein Zur SW:ZUR_ECOLI (P32692) (171 aa) fasta scores: E(): 0%2C 69.2%25 id in 169 aa;gbkey=CDS;product=putative regulatory protein;protein_id=CAL19000.1;transl_table=11
AL590842.1	EMBL	sequence_feature	322392	322757	.	-	.	ID=id768;Note=Pfam match to entry PF01475 FUR%2C Ferric uptake regulator family%2C score 6.30%2C E-value 7.2e-05;gbkey=misc_feature;inference=protein motif:PF01475
AL590842.1	EMBL	gene	323066	324103	.	+	.	ID=gene316;Name=YPO0316;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0316
AL590842.1	EMBL	CDS	323066	324103	.	+	0	ID=cds310;Parent=gene316;Dbxref=GOA:Q8ZJ14,InterPro:IPR001269,InterPro:IPR004653,InterPro:IPR013785,InterPro:IPR018517,NCBI_GP:CAL19001.1;Name=CAL19001.1;Note=Similar to many proteins of unknown function e.g. Escherichia coli hypothetical protein YjbN SW:YJBN_ECOLI (P32695) (330 aa) fasta scores: E(): 0%2C 78.2%25 id in 316 aa. Note the possible alternative translational start site at codon 27;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19001.1;transl_table=11
AL590842.1	EMBL	sequence_feature	323132	324073	.	+	.	ID=id769;Note=Pfam match to entry PF01207 UPF0034%2C Uncharacterized protein family UPF0034%2C score 440.00%2C E-value 2.1e-128;gbkey=misc_feature;inference=protein motif:PF01207
AL590842.1	EMBL	sequence_feature	323369	323425	.	+	.	ID=id770;Note=PS01136 Uncharacterized protein family UPF0034 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01136
AL590842.1	EMBL	gene	324619	324837	.	+	.	ID=gene317;Name=YPO0318;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0318
AL590842.1	EMBL	CDS	324619	324837	.	+	0	ID=cds311;Parent=gene317;Dbxref=InterPro:IPR014318,UniProtKB/TrEMBL:Q7CKP3,NCBI_GP:CAL19002.1;Name=CAL19002.1;Note=Similar to Escherichia coli hypothetical protein YjbO SW:YJBO_ECOLI (P32696) (80 aa) fasta scores: E(): 1.7e-14%2C 58.3%25 id in 72 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative exported protein;protein_id=CAL19002.1;transl_table=11
AL590842.1	EMBL	sequence_feature	324637	324705	.	+	.	ID=id771;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	324733	324801	.	+	.	ID=id772;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	325182	326165	.	-	.	ID=gene318;Name=b4051;gbkey=Gene;gene=b4051;gene_biotype=protein_coding;gene_synonym=hcz,qor;locus_tag=YPO0319
AL590842.1	EMBL	CDS	325182	326165	.	-	0	ID=cds312;Parent=gene318;Dbxref=GOA:Q0WJY9,InterPro:IPR002085,InterPro:IPR002364,InterPro:IPR011032,InterPro:IPR013149,InterPro:IPR013154,InterPro:IPR016040,UniProtKB/TrEMBL:Q0WJY9,NCBI_GP:CAL19003.1;Name=CAL19003.1;Note=Similar to Escherichia coli quinone oxidoreductase Qor SW:QOR_ECOLI (P28304) (327 aa) fasta scores: E(): 0%2C73.4%25 id in 327 aa;gbkey=CDS;gene=b4051;product=quinone oxidoreductase;protein_id=CAL19003.1;transl_table=11
AL590842.1	EMBL	sequence_feature	325185	326123	.	-	.	ID=id773;Note=Pfam match to entry PF00107 adh_zinc%2C Zinc-binding dehydrogenases%2C score 264.40%2C E-value 1.5e-75;gbkey=misc_feature;gene=b4051;inference=protein motif:PF00107
AL590842.1	EMBL	sequence_feature	325680	325745	.	-	.	ID=id774;Note=PS01162 Quinone oxidoreductase / zeta-crystallin signature.;gbkey=misc_feature;gene=b4051;inference=protein motif:ProSite:PS01162
AL590842.1	EMBL	sequence_feature	325692	325724	.	-	.	ID=id775;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=b4051;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	326497	327903	.	+	.	ID=gene319;Name=b4052;gbkey=Gene;gene=b4052;gene_biotype=protein_coding;gene_synonym=dnaB,groP,grpA;locus_tag=YPO0320
AL590842.1	EMBL	CDS	326497	327903	.	+	0	ID=cds313;Parent=gene319;Dbxref=GOA:Q7CKP2,InterPro:IPR003593,InterPro:IPR007692,InterPro:IPR007693,InterPro:IPR007694,InterPro:IPR016136,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CKP2,NCBI_GP:CAL19004.1;Name=CAL19004.1;Note=Similar to Escherichia coli replicative DNA helicase DnaB SW:DNAB_ECOLI (P03005) (471 aa) fasta scores: E(): 0%2C84.9%25 id in 471 aa;gbkey=CDS;gene=b4052;product=replicative DNA helicase;protein_id=CAL19004.1;transl_table=11
AL590842.1	EMBL	sequence_feature	326641	327693	.	+	.	ID=id776;Note=Pfam match to entry PF00772 DnaB%2C DnaB-like helicase%2C score 652.30%2C E-value 1.4e-205;gbkey=misc_feature;gene=b4052;inference=protein motif:PF00772
AL590842.1	EMBL	sequence_feature	327178	327201	.	+	.	ID=id777;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=b4052;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	327583	327648	.	+	.	ID=id778;Note=Predicted helix-turn-helix motif with score 1279 (+3.54 SD) at aa 363-384%2C sequence RSLKALAKELQVPVVALSQLNR;gbkey=misc_feature;gene=b4052
AL590842.1	EMBL	gene	328000	329079	.	+	.	ID=gene320;Name=alr;gbkey=Gene;gene=alr;gene_biotype=protein_coding;locus_tag=YPO0321
AL590842.1	EMBL	CDS	328000	329079	.	+	0	ID=cds314;Parent=gene320;Dbxref=GOA:Q8ZJ10,InterPro:IPR000821,InterPro:IPR001608,InterPro:IPR009006,InterPro:IPR011079,InterPro:IPR020622,InterPro:IPR029066,NCBI_GP:CAL19005.1;Name=CAL19005.1;Note=Similar to Escherichia coli biosynthetic alanine racemase Alr SW:ALR1_ECOLI (P29743) (359 aa) fasta scores: E(): 0%2C 72.1%25 id in 358 aa;gbkey=CDS;gene=alr;product=alanine racemase (biosynthetic);protein_id=CAL19005.1;transl_table=11
AL590842.1	EMBL	sequence_feature	328081	329070	.	+	.	ID=id779;Note=Pfam match to entry PF00842 Ala_racemase%2C Alanine racemase%2C score 589.20%2C E-value 2.5e-173;gbkey=misc_feature;gene=alr;inference=protein motif:PF00842
AL590842.1	EMBL	sequence_feature	328090	328122	.	+	.	ID=id780;Note=PS00395 Alanine racemase pyridoxal-phosphate attachment site.;gbkey=misc_feature;gene=alr;inference=protein motif:ProSite:PS00395
AL590842.1	EMBL	gene	329265	330458	.	+	.	ID=gene321;Name=tyrB;gbkey=Gene;gene=tyrB;gene_biotype=protein_coding;locus_tag=YPO0322
AL590842.1	EMBL	CDS	329265	330458	.	+	0	ID=cds315;Parent=gene321;Dbxref=GOA:Q7CKP1,InterPro:IPR000796,InterPro:IPR004838,InterPro:IPR004839,InterPro:IPR015421,InterPro:IPR015424,UniProtKB/TrEMBL:Q7CKP1,NCBI_GP:CAL19006.1;Name=CAL19006.1;Note=Similar to Escherichia coli aromatic-amino-acid aminotransferase TyrB SW:TYRB_ECOLI (P04693) (397 aa) fasta scores: E(): 0%2C 75.5%25 id in 396 aa;gbkey=CDS;gene=tyrB;product=aromatic-amino-acid aminotransferase;protein_id=CAL19006.1;transl_table=11
AL590842.1	EMBL	sequence_feature	329265	330455	.	+	.	ID=id781;Note=Pfam match to entry PF00155 aminotran_1%2CAminotransferases class-I%2C score 503.10%2C E-value 2.1e-147;gbkey=misc_feature;gene=tyrB;inference=protein motif:PF00155
AL590842.1	EMBL	sequence_feature	329994	330035	.	+	.	ID=id782;Note=PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site.;gbkey=misc_feature;gene=tyrB;inference=protein motif:ProSite:PS00105
AL590842.1	EMBL	gene	330985	331344	.	+	.	ID=gene322;Name=YPO0323;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0323
AL590842.1	EMBL	CDS	330985	331344	.	+	0	ID=cds316;Parent=gene322;Dbxref=InterPro:IPR007351,UniProtKB/TrEMBL:Q74XF0,NCBI_GP:CAL19007.1;Name=CAL19007.1;Note=Similar to Escherichia coli hypothetical protein YjbR SW:YJBR_ECOLI (P32699) (118 aa) fasta scores: E(): 1.6e-27%2C 57.4%25 id in 115 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19007.1;transl_table=11
AL590842.1	EMBL	gene	331437	334280	.	-	.	ID=gene323;Name=b4058;gbkey=Gene;gene=b4058;gene_biotype=protein_coding;gene_synonym=dinE,uvrA;locus_tag=YPO0324
AL590842.1	EMBL	CDS	331437	334280	.	-	0	ID=cds317;Parent=gene323;Dbxref=GOA:Q8ZJ07,InterPro:IPR003439,InterPro:IPR004602,InterPro:IPR013815,InterPro:IPR017871,InterPro:IPR027417,NCBI_GP:CAL19008.1;Name=CAL19008.1;Note=Similar to Escherichia coli excinuclease ABC subunit A UvrA SW:UVRA_ECOLI (P07671) (940 aa) fasta scores: E(): 0%2C 90.9%25 id in 940 aa;gbkey=CDS;gene=b4058;product=excinuclease ABC subunit A;protein_id=CAL19008.1;transl_table=11
AL590842.1	EMBL	sequence_feature	331566	332384	.	-	.	ID=id783;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 133.30%2C E-value 4.5e-36;gbkey=misc_feature;gene=b4058;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	331749	331793	.	-	.	ID=id784;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=b4058;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	332340	332363	.	-	.	ID=id785;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=b4058;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	332592	334211	.	-	.	ID=id786;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 5.10%2C E-value 9.7e-06;gbkey=misc_feature;gene=b4058;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	332778	332822	.	-	.	ID=id787;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=b4058;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	334167	334190	.	-	.	ID=id788;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=b4058;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	334738	335286	.	+	.	ID=gene324;Name=exrB;gbkey=Gene;gene=exrB;gene_biotype=protein_coding;gene_synonym=lexC,ssb;locus_tag=YPO0325
AL590842.1	EMBL	CDS	334738	335286	.	+	0	ID=cds318;Parent=gene324;Dbxref=GOA:Q8ZJ06,InterPro:IPR000424,InterPro:IPR011344,InterPro:IPR012340,NCBI_GP:CAL19009.1;Name=CAL19009.1;Note=Similar to Escherichia coli single-strand DNA-binding protein Ssb SW:SSB_ECOLI (P02339) (177 aa) fasta scores: E(): 0%2C 87.3%25 id in 181 aa;gbkey=CDS;gene=exrB;product=single-strand binding protein;protein_id=CAL19009.1;transl_table=11
AL590842.1	EMBL	sequence_feature	334753	335079	.	+	.	ID=id789;Note=Pfam match to entry PF00436 SSB%2C Single-strand binding protein family%2C score 232.50%2C E-value 2.2e-68;gbkey=misc_feature;gene=exrB;inference=protein motif:PF00436
AL590842.1	EMBL	sequence_feature	334753	334791	.	+	.	ID=id790;Note=PS00735 Single-strand binding protein family signature 1.;gbkey=misc_feature;gene=exrB;inference=protein motif:ProSite:PS00735
AL590842.1	EMBL	sequence_feature	334894	334923	.	+	.	ID=id791;Note=PS00736 Single-strand binding protein family signature 2.;gbkey=misc_feature;gene=exrB;inference=protein motif:ProSite:PS00736
AL590842.1	EMBL	gene	335533	335847	.	-	.	ID=gene325;Name=YPO0326;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0326
AL590842.1	EMBL	CDS	335533	335847	.	-	0	ID=cds319;Parent=gene325;Dbxref=GOA:Q0WJY2,InterPro:IPR008000,InterPro:IPR011008,InterPro:IPR013448,NCBI_GP:CAL19010.1;Name=CAL19010.1;Note=Similar to Escherichia coli hypothetical protein YiiL SW:YIIL_ECOLI (P32156) (104 aa) fasta scores: E(): 0%2C77.7%25 id in 103 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19010.1;transl_table=11
AL590842.1	EMBL	gene	335861	337009	.	-	.	ID=gene326;Name=YPO0327;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0327
AL590842.1	EMBL	CDS	335861	337009	.	-	0	ID=cds320;Parent=gene326;Dbxref=GOA:Q7CKP0,InterPro:IPR001670,InterPro:IPR013460,InterPro:IPR018211,UniProtKB/TrEMBL:Q7CKP0,NCBI_GP:CAL19011.1;Name=CAL19011.1;Note=Similar to Bacillus methanolicus NAD-dependent methanol dehydrogenase Mdh SW:MEDH_BACMT (P31005) (380 aa) fasta scores: E(): 0%2C 42.9%25 id in 378 aa and to Escherichia coli probable alcohol dehydrogenase YiaY SW:ADH2_ECOLI (P37686) (382 aa) fasta scores: E(): 0%2C 43.6%25 id in 376 aa;gbkey=CDS;product=probable alcohol dehydrogenase;protein_id=CAL19011.1;transl_table=11
AL590842.1	EMBL	sequence_feature	335888	336988	.	-	.	ID=id792;Note=Pfam match to entry PF00465 Fe-ADH%2C Iron-containing alcohol dehydrogenases%2C score 439.60%2C E-value 2.7e-128;gbkey=misc_feature;inference=protein motif:PF00465
AL590842.1	EMBL	sequence_feature	336173	336235	.	-	.	ID=id793;Note=PS00060 Iron-containing alcohol dehydrogenases signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00060
AL590842.1	EMBL	sequence_feature	336410	336496	.	-	.	ID=id794;Note=PS00913 Iron-containing alcohol dehydrogenases signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS00913
AL590842.1	EMBL	gene	337076	337900	.	-	.	ID=gene327;Name=b3902;gbkey=Gene;gene=b3902;gene_biotype=protein_coding;gene_synonym=rhaD;locus_tag=YPO0328
AL590842.1	EMBL	CDS	337076	337900	.	-	0	ID=cds321;Parent=gene327;Dbxref=GOA:Q8ZJ03,InterPro:IPR001303,InterPro:IPR013447,NCBI_GP:CAL19012.1;Name=CAL19012.1;Note=Similar to Escherichia coli rhamnulose-1-phosphate aldolase RhaD SW:RHAD_ECOLI (P32169) (274 aa) fasta scores: E(): 0%2C 68.4%25 id in 272 aa;gbkey=CDS;gene=b3902;product=rhamnulose-1-phosphate aldolase;protein_id=CAL19012.1;transl_table=11
AL590842.1	EMBL	sequence_feature	337097	337759	.	-	.	ID=id795;Note=Pfam match to entry PF00596 Aldolase_II%2C Class II Aldolase and Adducin N-terminal domain.%2C score 169.40%2CE-value 6.1e-47;gbkey=misc_feature;gene=b3902;inference=protein motif:PF00596
AL590842.1	EMBL	gene	337913	339169	.	-	.	ID=gene328;Name=b3903;gbkey=Gene;gene=b3903;gene_biotype=protein_coding;gene_synonym=rhaA;locus_tag=YPO0329
AL590842.1	EMBL	CDS	337913	339169	.	-	0	ID=cds322;Parent=gene328;Dbxref=GOA:P58507,InterPro:IPR009308,InterPro:IPR013022,NCBI_GP:CAL19013.1;Name=CAL19013.1;Note=Similar to Escherichia coli L-rhamnose isomerase RhaA SW:RHAA_ECOLI (P32170) (419 aa) fasta scores: E(): 0%2C85.2%25 id in 418 aa;gbkey=CDS;gene=b3903;product=L-rhamnose isomerase;protein_id=CAL19013.1;transl_table=11
AL590842.1	EMBL	gene	339166	340623	.	-	.	ID=gene329;Name=b3904;gbkey=Gene;gene=b3904;gene_biotype=protein_coding;gene_synonym=rhaB;locus_tag=YPO0330
AL590842.1	EMBL	CDS	339166	340623	.	-	0	ID=cds323;Parent=gene329;Dbxref=GOA:Q8ZJ02,InterPro:IPR013449,InterPro:IPR018484,InterPro:IPR018485,NCBI_GP:CAL19014.1;Name=CAL19014.1;Note=Similar to Escherichia coli rhamnulokinase RhaB SW:RHAB_ECOLI (P32171) (489 aa) fasta scores: E(): 0%2C 62.9%25 id in 483 aa;gbkey=CDS;gene=b3904;product=rhamnulokinase;protein_id=CAL19014.1;transl_table=11
AL590842.1	EMBL	sequence_feature	339850	340395	.	-	.	ID=id796;Note=Pfam match to entry PF00370 FGGY%2C FGGY family of carbohydrate kinases%2C score 111.80%2C E-value 1.3e-29;gbkey=misc_feature;gene=b3904;inference=protein motif:PF00370
AL590842.1	EMBL	gene	340646	340828	.	+	.	ID=gene330;Name=YPO0331;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0331
AL590842.1	EMBL	CDS	340646	340828	.	+	0	ID=cds324;Parent=gene330;Dbxref=UniProtKB/TrEMBL:Q0WJX7,NCBI_GP:CAL19015.1;Name=CAL19015.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19015.1;transl_table=11
AL590842.1	EMBL	gene	341050	341871	.	+	.	ID=gene331;Name=b3905;gbkey=Gene;gene=b3905;gene_biotype=protein_coding;gene_synonym=rhaC2,rhaS;locus_tag=YPO0332
AL590842.1	EMBL	CDS	341050	341871	.	+	0	ID=cds325;Parent=gene331;Dbxref=GOA:Q8ZJ00,InterPro:IPR003313,InterPro:IPR009057,InterPro:IPR014710,InterPro:IPR018060,InterPro:IPR020449,InterPro:IPR023609,NCBI_GP:CAL19016.1;Name=CAL19016.1;Note=Similar to Escherichia coli L-rhamnose operon regulatory protein RhaS SW:RHAS_ECOLI (P09377) (278 aa) fasta scores: E(): 0%2C 60.0%25 id in 270 aa;gbkey=CDS;gene=b3905;product=L-rhamnose operon regulatory protein;protein_id=CAL19016.1;transl_table=11
AL590842.1	EMBL	sequence_feature	341608	341868	.	+	.	ID=id797;Note=Pfam match to entry PF00165 HTH_AraC%2C Bacterial regulatory helix-turn-helix proteins%2C araC family%2C score 97.10%2C E-value 3.6e-25;gbkey=misc_feature;gene=b3905;inference=protein motif:PF00165
AL590842.1	EMBL	sequence_feature	341611	341676	.	+	.	ID=id798;Note=Predicted helix-turn-helix motif with score 1051 (+2.77 SD) at aa 196-217%2C sequence VEWPELADRFALPLRTLHRQLK;gbkey=misc_feature;gene=b3905
AL590842.1	EMBL	gene	342004	342876	.	+	.	ID=gene332;Name=b3906;gbkey=Gene;gene=b3906;gene_biotype=protein_coding;gene_synonym=rhaC1,rhaR;locus_tag=YPO0333
AL590842.1	EMBL	CDS	342004	342876	.	+	0	ID=cds326;Parent=gene332;Dbxref=GOA:Q8ZIZ9,InterPro:IPR003313,InterPro:IPR009057,InterPro:IPR011051,InterPro:IPR018060,InterPro:IPR018062,InterPro:IPR020449,InterPro:IPR023699,NCBI_GP:CAL19017.1;Name=CAL19017.1;Note=Similar to Escherichia coli L-rhamnose operon transcriptional activator RhaR SW:RHAR_ECOLI (P09378) (312 aa) fasta scores: E(): 0%2C 54.0%25 id in 272 aa;gbkey=CDS;gene=b3906;product=L-rhamnose operon transcriptional activator;protein_id=CAL19017.1;transl_table=11
AL590842.1	EMBL	sequence_feature	342577	342837	.	+	.	ID=id799;Note=Pfam match to entry PF00165 HTH_AraC%2C Bacterial regulatory helix-turn-helix proteins%2C araC family%2C score 98.50%2C E-value 1.4e-25;gbkey=misc_feature;gene=b3906;inference=protein motif:PF00165
AL590842.1	EMBL	sequence_feature	342688	342816	.	+	.	ID=id800;Note=PS00041 Bacterial regulatory proteins%2C araC family signature.;gbkey=misc_feature;gene=b3906;inference=protein motif:ProSite:PS00041
AL590842.1	EMBL	gene	343025	344059	.	-	.	ID=gene333;Name=rhaT;gbkey=Gene;gene=rhaT;gene_biotype=protein_coding;locus_tag=YPO0334
AL590842.1	EMBL	CDS	343025	344059	.	-	0	ID=cds327;Parent=gene333;Dbxref=GOA:Q8ZIZ8,InterPro:IPR004673,NCBI_GP:CAL19018.1;Name=CAL19018.1;Note=Similar to Escherichia coli L-rhamnose-proton symport protein RhaT SW:RHAT_ECOLI (P27125) (344 aa) fasta scores: E(): 0%2C 79.9%25 id in 343 aa;gbkey=CDS;gene=rhaT;inference=protein motif:TMHMM:2.0;product=L-rhamnose-proton symport protein;protein_id=CAL19018.1;transl_table=11
AL590842.1	EMBL	sequence_feature	343031	343096	.	-	.	ID=id801;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rhaT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	343130	343186	.	-	.	ID=id802;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rhaT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	343232	343297	.	-	.	ID=id803;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rhaT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	343361	343426	.	-	.	ID=id804;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rhaT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	343487	343552	.	-	.	ID=id805;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rhaT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	343592	343657	.	-	.	ID=id806;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rhaT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	343703	343768	.	-	.	ID=id807;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rhaT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	343790	343855	.	-	.	ID=id808;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rhaT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	343886	343942	.	-	.	ID=id809;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rhaT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	343982	344047	.	-	.	ID=id810;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rhaT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	343997	344029	.	-	.	ID=id811;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=rhaT;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	344098	348755	.	-	.	ID=id812;Note=Region which exhibits many of the characteristics of a pathogenicity island: low G+C (37%25)%2C next to tRNA Phe%2Ccontains transposase remnants and other pseudogenes and contains a viral enhancing protein (YPO0339) important for the invasion of the cells of the insect midgut.;gbkey=misc_feature
AL590842.1	EMBL	gene	344213	344479	.	+	.	ID=gene334;Name=YPO0335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0335
AL590842.1	EMBL	CDS	344213	344479	.	+	0	ID=cds328;Parent=gene334;Dbxref=UniProtKB/TrEMBL:Q7CKN5,NCBI_GP:CAL19019.1;Name=CAL19019.1;Note=Doubtful CDS with no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19019.1;transl_table=11
AL590842.1	EMBL	gene	344490	344789	.	+	.	ID=gene335;Name=YPO0336;end_range=344789,.;gbkey=Gene;gene_biotype=other;locus_tag=YPO0336;partial=true;start_range=.,344490
AL590842.1	EMBL	mRNA	344490	344789	.	+	.	ID=rna5;Parent=gene335;Note=Gene remnant which is similar to Shigella dysenteriae insertion element protein InsB SW:ISBN_SHIDY (P03832) (131 aa) fasta scores: E(): 0%2C 84.7%25 id in 98 aa%3B~was marked partial;end_range=344789,.;gbkey=mRNA;partial=true;product=insertion element protein (fragment);start_range=.,344490
AL590842.1	EMBL	exon	344490	344789	.	+	.	ID=id813;Parent=rna5;Note=Gene remnant which is similar to Shigella dysenteriae insertion element protein InsB SW:ISBN_SHIDY (P03832) (131 aa) fasta scores: E(): 0%2C 84.7%25 id in 98 aa%3B~was marked partial;end_range=344789,.;gbkey=mRNA;partial=true;product=insertion element protein (fragment);start_range=.,344490
AL590842.1	EMBL	gene	344915	345340	.	-	.	ID=gene336;Name=YPO0337;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0337
AL590842.1	EMBL	CDS	344915	345340	.	-	0	ID=cds329;Parent=gene336;Dbxref=GOA:Q7CKN4,InterPro:IPR008992,UniProtKB/TrEMBL:Q7CKN4,NCBI_GP:CAL19020.1;Name=CAL19020.1;Note=No significant database hits;gbkey=CDS;product=putative exported protein;protein_id=CAL19020.1;transl_table=11
AL590842.1	EMBL	gene	345570	345737	.	+	.	ID=gene337;Name=YPO0338;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0338
AL590842.1	EMBL	CDS	345570	345737	.	+	0	ID=cds330;Parent=gene337;Dbxref=UniProtKB/TrEMBL:Q74XE0,NCBI_GP:CAL19021.1;Name=CAL19021.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19021.1;transl_table=11
AL590842.1	EMBL	gene	345752	348322	.	+	.	ID=gene338;Name=YPO0339;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0339
AL590842.1	EMBL	CDS	345752	348322	.	+	0	ID=cds331;Parent=gene338;Dbxref=GOA:Q7CKN3,InterPro:IPR004954,UniProtKB/TrEMBL:Q7CKN3,NCBI_GP:CAL19022.1;Name=CAL19022.1;Note=Significantly similar to many viral enhancing proteins important for the invasion of the cells of the insect midgut e.g. Pseudalatia unipuncta granulosis virus (PuGV) viral enhancing factor Vef SW:VEF_GVPU (P41723) (901 aa) fasta scores: E(): 1.5e-20%2C 25.2%25 id in 869 aa and to Lymantria dispar multicapsid nuclear polyhedrosis virus enhancin TR:O37353 (EMBL:AF019970) (782 aa) fasta scores: E(): 1.2e-24%2C 24.5%25 id in 783 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF019970;product=enhancing factor (viral);protein_id=CAL19022.1;transl_table=11
AL590842.1	EMBL	sequence_feature	346490	346519	.	+	.	ID=id814;Note=PS00142 Neutral zinc metallopeptidases%2C zinc-binding region signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00142
AL590842.1	EMBL	gene	348349	348483	.	-	.	ID=gene339;Name=YPO0340;end_range=348483,.;gbkey=Gene;gene_biotype=other;locus_tag=YPO0340;partial=true;start_range=.,348349
AL590842.1	EMBL	mRNA	348349	348483	.	-	.	ID=rna6;Parent=gene339;Note=Gene remnant which is similar to Escherichia coli transposase YdcA TR:Q9Z4D1 (EMBL:AB021078) (393 aa) fasta scores: E(): 2.4e-06%2C 51.1%25 id in 45 aa%3B~was marked partial;end_range=348483,.;gbkey=mRNA;inference=similar to sequence:INSDC:AB021078;partial=true;product=transposase (fragment);start_range=.,348349
AL590842.1	EMBL	exon	348349	348483	.	-	.	ID=id815;Parent=rna6;Note=Gene remnant which is similar to Escherichia coli transposase YdcA TR:Q9Z4D1 (EMBL:AB021078) (393 aa) fasta scores: E(): 2.4e-06%2C 51.1%25 id in 45 aa%3B~was marked partial;end_range=348483,.;gbkey=mRNA;inference=similar to sequence:INSDC:AB021078;partial=true;product=transposase (fragment);start_range=.,348349
AL590842.1	EMBL	tRNA	348756	348831	.	-	.	ID=rna7;Note=tRNA Phe anticodon GAA%2C Cove score 84.11;gbkey=tRNA;product=tRNA-Phe
AL590842.1	EMBL	exon	348756	348831	.	-	.	ID=id816;Parent=rna7;Note=tRNA Phe anticodon GAA%2C Cove score 84.11;gbkey=tRNA;product=tRNA-Phe
AL590842.1	EMBL	gene	348976	349551	.	-	.	ID=gene340;Name=YPO0341;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0341
AL590842.1	EMBL	CDS	348976	349551	.	-	0	ID=cds332;Parent=gene340;Dbxref=GOA:Q74XD8,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR011075,InterPro:IPR015893,UniProtKB/TrEMBL:Q74XD8,NCBI_GP:CAL19023.1;Name=CAL19023.1;Note=Similar to Escherichia coli hypothetical protein YjdC SW:YJDC_ECOLI (P36656) (191 aa) fasta scores: E(): 0%2C64.4%25 id in 191 aa;gbkey=CDS;product=putative TetR-family regulatory protein;protein_id=CAL19023.1;transl_table=11
AL590842.1	EMBL	sequence_feature	349396	349536	.	-	.	ID=id817;Note=Pfam match to entry PF00440 tetR%2C Bacterial regulatory proteins%2C tetR family%2C score 21.20%2C E-value 0.00097;gbkey=misc_feature;inference=protein motif:PF00440
AL590842.1	EMBL	gene	349971	351986	.	+	.	ID=gene341;Name=YPO0342;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0342
AL590842.1	EMBL	CDS	349971	351986	.	+	0	ID=cds333;Parent=gene341;Dbxref=GOA:Q0WJW8,InterPro:IPR006006,InterPro:IPR016040,InterPro:IPR017896,InterPro:IPR017900,InterPro:IPR028261,UniProtKB/TrEMBL:Q0WJW8,NCBI_GP:CAL19024.1;Name=CAL19024.1;Note=Similar over whole length to Escherichia coli AegA protein expressed in E. coli under anaerobic conditions SW:AEGA_ECOLI (P37127) (659 aa) fasta scores: E(): 0%2C 56.6%25 id in 670 aa. The C-terminal portion of the product of this CDS is similar to many glutamate synthases e.g. Escherichia coli glutamate synthase [NADPH] small chain GltD SW:GLTD_ECOLI (P09832) (471 aa) fasta scores: E(): 0%2C 68.9%25 id in 470 aa;gbkey=CDS;product=putative oxidoreductase;protein_id=CAL19024.1;transl_table=11
AL590842.1	EMBL	sequence_feature	350208	350279	.	+	.	ID=id818;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 35.60%2C E-value 1.1e-06;gbkey=misc_feature;inference=protein motif:PF00037
AL590842.1	EMBL	sequence_feature	350229	350264	.	+	.	ID=id819;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00198
AL590842.1	EMBL	gene	352009	352566	.	+	.	ID=gene342;Name=hydN;gbkey=Gene;gene=hydN;gene_biotype=protein_coding;locus_tag=YPO0343
AL590842.1	EMBL	CDS	352009	352566	.	+	0	ID=cds334;Parent=gene342;Dbxref=GOA:Q7CKN2,InterPro:IPR001450,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:Q7CKN2,NCBI_GP:CAL19025.1;Name=CAL19025.1;Note=Similar to Escherichia coli electron transport protein HydN SW:HYDN_ECOLI (P30132) (175 aa) fasta scores: E(): 0%2C 50.0%25 id in 176 aa;gbkey=CDS;gene=hydN;product=4Fe-4S ferrodoxin;protein_id=CAL19025.1;transl_table=11
AL590842.1	EMBL	sequence_feature	352252	352323	.	+	.	ID=id820;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 32.90%2C E-value 7.4e-06;gbkey=misc_feature;gene=hydN;inference=protein motif:PF00037
AL590842.1	EMBL	sequence_feature	352273	352308	.	+	.	ID=id821;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;gene=hydN;inference=protein motif:ProSite:PS00198
AL590842.1	EMBL	sequence_feature	352411	352428	.	+	.	ID=id822;Note=PS00190 Cytochrome c family heme-binding site signature.;gbkey=misc_feature;gene=hydN;inference=protein motif:ProSite:PS00190
AL590842.1	EMBL	gene	352589	354736	.	+	.	ID=gene343;Name=b4079;gbkey=Gene;gene=b4079;gene_biotype=protein_coding;gene_synonym=fdhF;locus_tag=YPO0344
AL590842.1	EMBL	CDS	352589	354736	.	+	0	ID=cds335;Parent=gene343;Dbxref=GOA:Q7CKN1,InterPro:IPR006478,InterPro:IPR006655,InterPro:IPR006656,InterPro:IPR006657,InterPro:IPR006963,InterPro:IPR009010,InterPro:IPR027467,UniProtKB/TrEMBL:Q7CKN1,NCBI_GP:CAL19026.1;Name=CAL19026.1;Note=Similar to Escherichia coli formate dehydrogenase H%2CFdhF SW:FDHF_ECOLI (P07658) (715 aa) fasta scores: E(): 0%2C63.4%25 id in 715 aa. Interestingly%2C unlike in E. coli and Salmonella%2C the Yersinia fdhF gene lacks the opal UGA selenocysteine codon.;gbkey=CDS;gene=b4079;product=formate dehydrogenase H;protein_id=CAL19026.1;transl_table=11
AL590842.1	EMBL	sequence_feature	352604	352657	.	+	.	ID=id823;Note=PS00551 Prokaryotic molybdopterin oxidoreductases signature 1.;gbkey=misc_feature;gene=b4079;inference=protein motif:ProSite:PS00551
AL590842.1	EMBL	sequence_feature	353858	354046	.	+	.	ID=id824;Note=Pfam match to entry PF00384 molybdopterin%2CProkaryotic molybdopterin oxidoreductases%2C score 98.80%2CE-value 2.9e-31;gbkey=misc_feature;gene=b4079;inference=protein motif:PF00384
AL590842.1	EMBL	sequence_feature	353885	353938	.	+	.	ID=id825;Note=PS00490 Prokaryotic molybdopterin oxidoreductases signature 2.;gbkey=misc_feature;gene=b4079;inference=protein motif:ProSite:PS00490
AL590842.1	EMBL	sequence_feature	354308	354631	.	+	.	ID=id826;Note=Pfam match to entry PF01568 Molydop_binding%2CMolydopterin dinucleotide binding domain%2C score 97.50%2CE-value 2.6e-25;gbkey=misc_feature;gene=b4079;inference=protein motif:PF01568
AL590842.1	EMBL	sequence_feature	354536	354568	.	+	.	ID=id827;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=b4079;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	354798	356585	.	-	.	ID=gene344;Name=cycZ;gbkey=Gene;gene=cycZ;gene_biotype=protein_coding;gene_synonym=dsbD;locus_tag=YPO0345
AL590842.1	EMBL	CDS	354798	356585	.	-	0	ID=cds336;Parent=gene344;Dbxref=GOA:Q8ZIY9,InterPro:IPR003834,InterPro:IPR012336,InterPro:IPR017937,InterPro:IPR022910,InterPro:IPR028250,NCBI_GP:CAL19027.1;Name=CAL19027.1;Note=Similar to many including: Haemophilus influenzae thiol:disulfide interchange protein DsbD SW:DSBD_HAEIN (P44919) (579 aa) fasta scores: E(): 0%2C 47.1%25 id in 592 aa and Pantoea citrea thiol disulfide interchange protein DsbC TR:Q9XDB2 (EMBL:AF102175) (578 aa) fasta scores: E(): 0%2C61.1%25 id in 594 aa. Note the large overlap with the upstream CDS;gbkey=CDS;gene=cycZ;inference=similar to sequence:INSDC:AF102175;product=thiol:disulfide interchange protein;protein_id=CAL19027.1;transl_table=11
AL590842.1	EMBL	sequence_feature	355035	355091	.	-	.	ID=id828;Note=PS00194 Thioredoxin family active site.;gbkey=misc_feature;gene=cycZ;inference=protein motif:ProSite:PS00194
AL590842.1	EMBL	sequence_feature	355221	355271	.	-	.	ID=id829;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=cycZ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	355293	355349	.	-	.	ID=id830;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=cycZ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	355362	355412	.	-	.	ID=id831;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=cycZ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	355452	355517	.	-	.	ID=id832;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=cycZ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	355578	355643	.	-	.	ID=id833;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=cycZ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	355707	355772	.	-	.	ID=id834;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=cycZ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	355818	355883	.	-	.	ID=id835;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=cycZ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	355920	355985	.	-	.	ID=id836;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=cycZ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	356561	356920	.	-	.	ID=gene345;Name=YPO0346;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0346
AL590842.1	EMBL	CDS	356561	356920	.	-	0	ID=cds337;Parent=gene345;Dbxref=GOA:Q74XD3,InterPro:IPR004323,InterPro:IPR011322,InterPro:IPR023700,PDB:3GSD,NCBI_GP:CAL19028.1;Name=CAL19028.1;Note=Similar to Escherichia coli periplasmic divalent cation tolerance protein%2C CutA SW:CUTA_ECOLI (P36654) (112 aa) fasta scores: E(): 0%2C 73.2%25 id in 112 aa;gbkey=CDS;product=putative cation tolerance protein;protein_id=CAL19028.1;transl_table=11
AL590842.1	EMBL	gene	357105	358406	.	-	.	ID=gene346;Name=b4138;gbkey=Gene;gene=b4138;gene_biotype=protein_coding;gene_synonym=dcuA,genA;locus_tag=YPO0347
AL590842.1	EMBL	CDS	357105	358406	.	-	0	ID=cds338;Parent=gene346;Dbxref=GOA:Q7CKM9,InterPro:IPR004668,UniProtKB/TrEMBL:Q7CKM9,NCBI_GP:CAL19029.1;Name=CAL19029.1;Note=Similar to Escherichia coli anaerobic C4-dicarboxylate transporter DcuA SW:DCUA_ECOLI (P04539) (433 aa) fasta scores: E(): 0%2C 85.0%25 id in 433 aa;gbkey=CDS;gene=b4138;inference=protein motif:TMHMM:2.0;product=anaerobic C4-dicarboxylate transporter;protein_id=CAL19029.1;transl_table=11
AL590842.1	EMBL	sequence_feature	357111	357176	.	-	.	ID=id837;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4138;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	357267	357332	.	-	.	ID=id838;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4138;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	357372	357428	.	-	.	ID=id839;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4138;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	357489	357554	.	-	.	ID=id840;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4138;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	357576	357632	.	-	.	ID=id841;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4138;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	357678	357728	.	-	.	ID=id842;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4138;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	357840	357905	.	-	.	ID=id843;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4138;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	357951	358016	.	-	.	ID=id844;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4138;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	358080	358145	.	-	.	ID=id845;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4138;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	358191	358256	.	-	.	ID=id846;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4138;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	358296	358361	.	-	.	ID=id847;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4138;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	358526	359962	.	-	.	ID=gene347;Name=aspA;gbkey=Gene;gene=aspA;gene_biotype=protein_coding;locus_tag=YPO0348
AL590842.1	EMBL	CDS	358526	359962	.	-	0	ID=cds339;Parent=gene347;Dbxref=GOA:Q0WJW2,InterPro:IPR000362,InterPro:IPR004708,InterPro:IPR008948,InterPro:IPR018951,InterPro:IPR020557,InterPro:IPR022761,InterPro:IPR024083,UniProtKB/TrEMBL:Q0WJW2,NCBI_GP:CAL19030.1;Name=CAL19030.1;Note=Similar to Escherichia coli aspartate ammonia-lyase AspA SW:ASPA_ECOLI (P04422) (478 aa) fasta scores: E(): 0%2C89.3%25 id in 478 aa;gbkey=CDS;gene=aspA;product=aspartate ammonia-lyase;protein_id=CAL19030.1;transl_table=11
AL590842.1	EMBL	sequence_feature	358583	359926	.	-	.	ID=id848;Note=Pfam match to entry PF00206 lyase_1%2C Lyase%2C score 685.70%2C E-value 2.2e-202;gbkey=misc_feature;gene=aspA;inference=protein motif:PF00206
AL590842.1	EMBL	sequence_feature	358976	359005	.	-	.	ID=id849;Note=PS00163 Fumarate lyases signature.;gbkey=misc_feature;gene=aspA;inference=protein motif:ProSite:PS00163
AL590842.1	EMBL	gene	360410	360988	.	+	.	ID=gene348;Name=YPO0349;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0349
AL590842.1	EMBL	CDS	360410	360988	.	+	0	ID=cds340;Parent=gene348;Dbxref=GOA:Q0WJW1,InterPro:IPR007313,UniProtKB/TrEMBL:Q0WJW1,NCBI_GP:CAL19031.1;Name=CAL19031.1;Note=Highly similar to Escherichia coli FxsA protein that suppresses F exclusion of bacteriophage T7 SW:FXSA_ECOLI (P37147) (158 aa) fasta scores: E(): 1.5e-29%2C 61.9%25 id in 176 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL19031.1;transl_table=11
AL590842.1	EMBL	sequence_feature	360413	360472	.	+	.	ID=id850;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	360482	360550	.	+	.	ID=id851;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	360653	360721	.	+	.	ID=id852;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	361243	361536	.	+	.	ID=gene349;Name=crpB;gbkey=Gene;gene=crpB;gene_biotype=protein_coding;gene_synonym=groES,hsp10;locus_tag=YPO0350
AL590842.1	EMBL	CDS	361243	361536	.	+	0	ID=cds341;Parent=gene349;Dbxref=GOA:Q8ZIY4,InterPro:IPR011032,InterPro:IPR018369,InterPro:IPR020818,NCBI_GP:CAL19032.1;Name=CAL19032.1;Note=Similar to Yersinia enterocolitica 10 kDa chaperonin%2C GroES SW:CH10_YEREN (P48228) (97 aa) fasta scores: E(): 3.1e-32%2C 95.9%25 id in 97 aa;gbkey=CDS;gene=crpB;product=10 kDa chaperonin;protein_id=CAL19032.1;transl_table=11
AL590842.1	EMBL	sequence_feature	361243	361530	.	+	.	ID=id853;Note=Pfam match to entry PF00166 cpn10%2C Chaperonins 10 Kd subunit%2C score 187.90%2C E-value 1.7e-52;gbkey=misc_feature;gene=crpB;inference=protein motif:PF00166
AL590842.1	EMBL	sequence_feature	361249	361323	.	+	.	ID=id854;Note=PS00681 Chaperonins cpn10 signature.;gbkey=misc_feature;gene=crpB;inference=protein motif:ProSite:PS00681
AL590842.1	EMBL	gene	361583	363229	.	+	.	ID=gene350;Name=crpA;gbkey=Gene;gene=crpA;gene_biotype=protein_coding;gene_synonym=groEL,hsp60,mopA;locus_tag=YPO0351
AL590842.1	EMBL	CDS	361583	363229	.	+	0	ID=cds342;Parent=gene350;Dbxref=GOA:Q8ZIY3,InterPro:IPR001844,InterPro:IPR002423,InterPro:IPR018370,InterPro:IPR027409,InterPro:IPR027413,NCBI_GP:CAL19033.1;Name=CAL19033.1;Note=Similar to Yersinia enterocolitica 60 kDa chaperonin GroEL SW:CH60_YEREN (P48219) (550 aa) fasta scores: E(): 0%2C98.4%25 id in 550 aa;gbkey=CDS;gene=crpA;product=60 kDa chaperonin;protein_id=CAL19033.1;transl_table=11
AL590842.1	EMBL	sequence_feature	361649	363157	.	+	.	ID=id855;Note=Pfam match to entry PF00118 cpn60_TCP1%2C TCP-1/cpn60 chaperonin family%2C score 867.20%2C E-value 5.1e-257;gbkey=misc_feature;gene=crpA;inference=protein motif:PF00118
AL590842.1	EMBL	sequence_feature	362795	362830	.	+	.	ID=id856;Note=PS00296 Chaperonins cpn60 signature.;gbkey=misc_feature;gene=crpA;inference=protein motif:ProSite:PS00296
AL590842.1	EMBL	gene	363865	364251	.	+	.	ID=gene351;Name=YPO0352;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0352
AL590842.1	EMBL	CDS	363865	364251	.	+	0	ID=cds343;Parent=gene351;Dbxref=InterPro:IPR025294,UniProtKB/TrEMBL:Q0WJV8,NCBI_GP:CAL19034.1;Name=CAL19034.1;Note=Similar to Escherichia coli hypothetical 13.1 kDa protein in mopA-efp intergenic region precursor YjeI SW:YJEI_ECOLI (P39278) (128 aa) fasta scores: E(): 1.6e-27%2C61.9%25 id in 126 aa;gbkey=CDS;product=putative lipoprotein;protein_id=CAL19034.1;transl_table=11
AL590842.1	EMBL	sequence_feature	363928	363960	.	+	.	ID=id857;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	364536	365564	.	-	.	ID=gene352;Name=YPO0353;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0353
AL590842.1	EMBL	CDS	364536	365564	.	-	0	ID=cds344;Parent=gene352;Dbxref=GOA:Q7CKM8,InterPro:IPR003739,InterPro:IPR007197,InterPro:IPR013785,InterPro:IPR022462,UniProtKB/TrEMBL:Q7CKM8,NCBI_GP:CAL19035.1;Name=CAL19035.1;Note=Similar to many proteins of undefined function e.g. Escherichia coli hypothetical protein YjeK SW:YJEK_ECOLI (P39280) (342 aa) fasta scores: E(): 0%2C 71.3%25 id in 341 aa. Also similar to several L-lysine 2%2C3-aminomutases e.g. from Clostridium subterminale KamA TR:Q9XBQ8 (EMBL:AF159146) (416 aa) fasta scores: E(): 0%2C 34.6%25 id in 324 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF159146;product=conserved hypothetical protein;protein_id=CAL19035.1;transl_table=11
AL590842.1	EMBL	gene	365600	366166	.	+	.	ID=gene353;Name=b4147;gbkey=Gene;gene=b4147;gene_biotype=protein_coding;gene_synonym=efp;locus_tag=YPO0354
AL590842.1	EMBL	CDS	365600	366166	.	+	0	ID=cds345;Parent=gene353;Dbxref=GOA:Q8ZIY0,InterPro:IPR001059,InterPro:IPR008991,InterPro:IPR011768,InterPro:IPR012340,InterPro:IPR013185,InterPro:IPR013852,InterPro:IPR014722,InterPro:IPR015365,InterPro:IPR020599,NCBI_GP:CAL19036.1;Name=CAL19036.1;Note=Similar to Escherichia coli elongation factor P EF-P SW:EFP_ECOLI (P33398) (187 aa) fasta scores: E(): 0%2C 90.9%25 id in 187 aa;gbkey=CDS;gene=b4147;product=elongation factor P;protein_id=CAL19036.1;transl_table=11
AL590842.1	EMBL	sequence_feature	365606	366160	.	+	.	ID=id858;Note=Pfam match to entry PF01132 EFP%2C Elongation factor P (EF-P)%2C score 398.20%2C E-value 8e-116;gbkey=misc_feature;gene=b4147;inference=protein motif:PF01132
AL590842.1	EMBL	sequence_feature	366053	366112	.	+	.	ID=id859;Note=PS01275 Elongation factor P signature.;gbkey=misc_feature;gene=b4147;inference=protein motif:ProSite:PS01275
AL590842.1	EMBL	gene	366413	366727	.	+	.	ID=gene354;Name=sugE;gbkey=Gene;gene=sugE;gene_biotype=protein_coding;locus_tag=YPO0355
AL590842.1	EMBL	CDS	366413	366727	.	+	0	ID=cds346;Parent=gene354;Dbxref=GOA:Q8D1E4,InterPro:IPR000390,NCBI_GP:CAL19037.1;Name=CAL19037.1;Note=Similar to Citrobacter freundii SugE protein%2C a supressor of groEL SW:SUGE_CITFR (O69279) (105 aa) fasta scores: E(): 6e-27%2C 75.0%25 id in 104 aa and to Escherichia coli protein SugE SW:SUGE_ECOLI (P30743) (105 aa) fasta scores: E(): 4.7e-26%2C 76.0%25 id in 104 aa;gbkey=CDS;gene=sugE;inference=protein motif:TMHMM:2.0;product=putative chaperone;protein_id=CAL19037.1;transl_table=11
AL590842.1	EMBL	sequence_feature	366413	366691	.	+	.	ID=id860;Note=Pfam match to entry PF00893 DUF7%2C Integral membrane protein DUF7%2C score 170.50%2C E-value 2.8e-47;gbkey=misc_feature;gene=sugE;inference=protein motif:PF00893
AL590842.1	EMBL	sequence_feature	366413	366472	.	+	.	ID=id861;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=sugE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	366509	366562	.	+	.	ID=id862;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=sugE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	366575	366643	.	+	.	ID=id863;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=sugE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	366662	366721	.	+	.	ID=id864;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=sugE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	repeat_region	366838	367549	.	-	.	ID=id865;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	366946	367404	.	-	.	ID=gene355;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO0356
AL590842.1	EMBL	CDS	366946	367404	.	-	0	ID=cds347;Parent=gene355;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL19038.1;Name=CAL19038.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL19038.1;transl_table=11
AL590842.1	EMBL	sequence_feature	367039	367350	.	-	.	ID=id866;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	367602	367958	.	-	.	ID=gene356;Name=b4151;gbkey=Gene;gene=b4151;gene_biotype=protein_coding;gene_synonym=frdD;locus_tag=YPO0357
AL590842.1	EMBL	CDS	367602	367958	.	-	0	ID=cds348;Parent=gene356;Dbxref=GOA:Q8ZIX8,InterPro:IPR003418,NCBI_GP:CAL19039.1;Name=CAL19039.1;Note=Similar to Escherichia coli fumarate reductase hydrophobic protein FrdD SW:FRDD_ECOLI (P03806) (119 aa) fasta scores: E(): 0%2C 85.6%25 id in 118 aa;gbkey=CDS;gene=b4151;inference=protein motif:TMHMM:2.0;product=fumarate reductase hydrophobic protein;protein_id=CAL19039.1;transl_table=11
AL590842.1	EMBL	sequence_feature	367605	367943	.	-	.	ID=id867;Note=Pfam match to entry PF02313 Fumarate_red_D%2C %2C score 270.30%2C E-value 2.5e-77;gbkey=misc_feature;gene=b4151;inference=protein motif:PF02313
AL590842.1	EMBL	sequence_feature	367608	367664	.	-	.	ID=id868;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4151;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	367728	367793	.	-	.	ID=id869;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4151;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	367854	367919	.	-	.	ID=id870;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4151;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	367975	368367	.	-	.	ID=gene357;Name=b4152;gbkey=Gene;gene=b4152;gene_biotype=protein_coding;gene_synonym=frdC;locus_tag=YPO0358
AL590842.1	EMBL	CDS	367975	368367	.	-	0	ID=cds349;Parent=gene357;Dbxref=GOA:Q8ZIX7,InterPro:IPR003510,NCBI_GP:CAL19040.1;Name=CAL19040.1;Note=Similar to Escherichia coli fumarate reductase hydrophobic protein FrdC SW:FRDC_ECOLI (P03805) (131 aa) fasta scores: E(): 0%2C 72.1%25 id in 129 aa;gbkey=CDS;gene=b4152;inference=protein motif:TMHMM:2.0;product=fumarate reductase hydrophobic protein;protein_id=CAL19040.1;transl_table=11
AL590842.1	EMBL	sequence_feature	367981	368346	.	-	.	ID=id871;Note=Pfam match to entry PF02300 Fumarate_red_C%2C Fumarate reductase subunit C%2C score 259.10%2C E-value 6.1e-74;gbkey=misc_feature;gene=b4152;inference=protein motif:PF02300
AL590842.1	EMBL	sequence_feature	367981	368031	.	-	.	ID=id872;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4152;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	368122	368187	.	-	.	ID=id873;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4152;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	368218	368274	.	-	.	ID=id874;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4152;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	368384	369118	.	-	.	ID=gene358;Name=b4153;gbkey=Gene;gene=b4153;gene_biotype=protein_coding;gene_synonym=frdB;locus_tag=YPO0359
AL590842.1	EMBL	CDS	368384	369118	.	-	0	ID=cds350;Parent=gene358;Dbxref=GOA:Q7CKM7,InterPro:IPR001041,InterPro:IPR004489,InterPro:IPR006058,InterPro:IPR009051,InterPro:IPR012675,InterPro:IPR017896,InterPro:IPR017900,InterPro:IPR025192,UniProtKB/TrEMBL:Q7CKM7,NCBI_GP:CAL19041.1;Name=CAL19041.1;Note=Similar to Escherichia coli fumarate reductase iron-sulfur protein FrdB SW:FRDB_ECOLI (P00364) (243 aa) fasta scores: E(): 0%2C 85.5%25 id in 242 aa;gbkey=CDS;gene=b4153;product=fumarate reductase iron-sulfur protein;protein_id=CAL19041.1;transl_table=11
AL590842.1	EMBL	sequence_feature	368624	368695	.	-	.	ID=id875;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 16.60%2C E-value 0.0069;gbkey=misc_feature;gene=b4153;inference=protein motif:PF00037
AL590842.1	EMBL	sequence_feature	368639	368674	.	-	.	ID=id876;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;gene=b4153;inference=protein motif:ProSite:PS00198
AL590842.1	EMBL	sequence_feature	368867	369061	.	-	.	ID=id877;Note=Pfam match to entry PF00111 fer2%2C 2Fe-2S iron-sulfur cluster binding domains%2C score 26.90%2C E-value 0.00047;gbkey=misc_feature;gene=b4153;inference=protein motif:PF00111
AL590842.1	EMBL	sequence_feature	368921	368947	.	-	.	ID=id878;Note=PS00197 2Fe-2S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;gene=b4153;inference=protein motif:ProSite:PS00197
AL590842.1	EMBL	gene	369111	370934	.	-	.	ID=gene359;Name=b4154;gbkey=Gene;gene=b4154;gene_biotype=protein_coding;gene_synonym=frdA;locus_tag=YPO0360
AL590842.1	EMBL	CDS	369111	370934	.	-	0	ID=cds351;Parent=gene359;Dbxref=GOA:Q7CKM6,InterPro:IPR003952,InterPro:IPR003953,InterPro:IPR005884,InterPro:IPR013027,InterPro:IPR014006,InterPro:IPR015939,InterPro:IPR027477,UniProtKB/TrEMBL:Q7CKM6,NCBI_GP:CAL19042.1;Name=CAL19042.1;Note=Similar to Escherichia coli fumarate reductase flavoprotein subunit FrdA SW:FRDA_ECOLI (P00363) (601 aa) fasta scores: E(): 0%2C 85.3%25 id in 605 aa;gbkey=CDS;gene=b4154;product=fumarate reductase flavoprotein subunit;protein_id=CAL19042.1;transl_table=11
AL590842.1	EMBL	sequence_feature	369636	370619	.	-	.	ID=id879;Note=Pfam match to entry PF00890 FAD_binding_2%2C FAD binding domain%2C score 682.80%2C E-value 1.7e-201;gbkey=misc_feature;gene=b4154;inference=protein motif:PF00890
AL590842.1	EMBL	sequence_feature	370779	370808	.	-	.	ID=id880;Note=PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site.;gbkey=misc_feature;gene=b4154;inference=protein motif:ProSite:PS00504
AL590842.1	EMBL	gene	371041	371232	.	+	.	ID=gene360;Name=YPO0361;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0361
AL590842.1	EMBL	CDS	371041	371232	.	+	0	ID=cds352;Parent=gene360;Dbxref=UniProtKB/TrEMBL:Q74XC2,NCBI_GP:CAL19043.1;Name=CAL19043.1;Note=Doubtful CDS with no significant database hits. Note the low G+C content (29%25);gbkey=CDS;product=putative membrane protein;protein_id=CAL19043.1;transl_table=11
AL590842.1	EMBL	sequence_feature	371083	371151	.	+	.	ID=id881;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	371392	372369	.	+	.	ID=gene361;Name=b4155;gbkey=Gene;gene=b4155;gene_biotype=protein_coding;gene_synonym=genX,poxA;locus_tag=YPO0362
AL590842.1	EMBL	CDS	371392	372369	.	+	0	ID=cds353;Parent=gene361;Dbxref=GOA:Q8ZIX3,InterPro:IPR004364,InterPro:IPR004525,InterPro:IPR006195,InterPro:IPR018149,InterPro:IPR018150,NCBI_GP:CAL19044.1;Name=CAL19044.1;Note=Similar to lysyl-tRNA synthetases from Escherichia coli putative PoxA SW:SYK3_ECOLI (P03812) (325 aa) fasta scores: E(): 0%2C 84.0%25 id in 325 aa and to Vibrio cholerae vc2655 TR:Q9KNS6 (EMBL:AE004331) (349 aa) fasta scores: E(): 0%2C 63.4%25 id in 317 aa;gbkey=CDS;gene=b4155;inference=similar to sequence:INSDC:AE004331;product=putative lysyl-tRNA synthetase;protein_id=CAL19044.1;transl_table=11
AL590842.1	EMBL	sequence_feature	371392	372366	.	+	.	ID=id882;Note=Pfam match to entry PF00152 tRNA-synt_2%2C tRNA synthetases class II (D%2C K and N)%2C score 436.20%2C E-value 2.8e-127;gbkey=misc_feature;gene=b4155;inference=protein motif:PF00152
AL590842.1	EMBL	sequence_feature	371686	371739	.	+	.	ID=id883;Note=PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.;gbkey=misc_feature;gene=b4155;inference=protein motif:ProSite:PS00179
AL590842.1	EMBL	sequence_feature	372283	372312	.	+	.	ID=id884;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.;gbkey=misc_feature;gene=b4155;inference=protein motif:ProSite:PS00339
AL590842.1	EMBL	gene	372490	375849	.	-	.	ID=gene362;Name=YPO0363;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0363
AL590842.1	EMBL	CDS	372490	375849	.	-	0	ID=cds354;Parent=gene362;Dbxref=GOA:Q7CKM5,InterPro:IPR006685,InterPro:IPR006686,InterPro:IPR010920,InterPro:IPR011014,InterPro:IPR011066,InterPro:IPR024393,InterPro:IPR025692,UniProtKB/TrEMBL:Q7CKM5,NCBI_GP:CAL19045.1;Name=CAL19045.1;Note=Similar to Escherichia coli potassium efflux system protein%2C KefA SW:KEFA_ECOLI (P77338) (1120 aa) fasta scores: E(): 0%2C 29.1%25 id in 1100 aa. Also similar to several proteins of undefined function e.g. Escherichia coli hypothetical 123.8 kDa protein in genX-psd intergenic region precursor YjeP SW:YJEP_ECOLI (P39285) (1107 aa) fasta scores: E(): 0%2C 68.1%25 id in 1105 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane transport protein;protein_id=CAL19045.1;transl_table=11
AL590842.1	EMBL	sequence_feature	372583	373188	.	-	.	ID=id885;Note=Pfam match to entry PF00924 UPF0003%2C Uncharacterized protein family UPF0003%2C score 248.80%2C E-value 7.3e-71;gbkey=misc_feature;inference=protein motif:PF00924
AL590842.1	EMBL	sequence_feature	372865	372969	.	-	.	ID=id886;Note=PS01246 Uncharacterized protein family UPF0003 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01246
AL590842.1	EMBL	sequence_feature	373114	373170	.	-	.	ID=id887;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	373264	373329	.	-	.	ID=id888;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	373390	373455	.	-	.	ID=id889;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	373654	373719	.	-	.	ID=id890;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	373735	373800	.	-	.	ID=id891;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	373864	373929	.	-	.	ID=id892;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	373960	374016	.	-	.	ID=id893;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	374080	374145	.	-	.	ID=id894;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	374176	374241	.	-	.	ID=id895;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	374332	374382	.	-	.	ID=id896;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	375873	376754	.	-	.	ID=gene363;Name=psd;gbkey=Gene;gene=psd;gene_biotype=protein_coding;locus_tag=YPO0364
AL590842.1	EMBL	CDS	375873	376754	.	-	0	ID=cds355;Parent=gene363;Dbxref=GOA:Q8ZIX1,InterPro:IPR003817,NCBI_GP:CAL19046.1;Name=CAL19046.1;Note=Similar to Haemophilus influenzae phosphatidylserine decarboxylase proenzyme Psd SW:DPSD_HAEIN (P43789) (290 aa) fasta scores: E(): 0%2C 58.9%25 id in 280 aa and to Escherichia coli phosphatidylserine decarboxylase proenzyme Psd SW:DPSD_ECOLI (P10740) (322 aa) fasta scores: E(): 0%2C 73.0%25 id in 293 aa;gbkey=CDS;gene=psd;product=phosphatidylserine decarboxylase proenzyme;protein_id=CAL19046.1;transl_table=11
AL590842.1	EMBL	gene	377079	378131	.	-	.	ID=gene364;Name=YPO0365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0365
AL590842.1	EMBL	CDS	377079	378131	.	-	0	ID=cds356;Parent=gene364;Dbxref=GOA:Q8ZIX0,InterPro:IPR004881,InterPro:IPR010914,InterPro:IPR027417,NCBI_GP:CAL19047.1;Name=CAL19047.1;Note=Similar to Escherichia coli hypothetical protein YjeQ SW:YJEQ_ECOLI (P39286) (350 aa) fasta scores: E(): 0%2C78.9%25 id in 351 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19047.1;transl_table=11
AL590842.1	EMBL	sequence_feature	377472	377495	.	-	.	ID=id897;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	378331	378876	.	+	.	ID=gene365;Name=b4162;gbkey=Gene;gene=b4162;gene_biotype=protein_coding;gene_synonym=orn;locus_tag=YPO0366
AL590842.1	EMBL	CDS	378331	378876	.	+	0	ID=cds357;Parent=gene365;Dbxref=GOA:Q8ZIW9,InterPro:IPR006055,InterPro:IPR012337,InterPro:IPR013520,InterPro:IPR022894,NCBI_GP:CAL19048.1;Name=CAL19048.1;Note=Similar to Escherichia coli oligoribonuclease Orn SW:ORN_ECOLI (P39287) (180 aa) fasta scores: E(): 0%2C 87.6%25 id in 177 aa;gbkey=CDS;gene=b4162;product=oligoribonuclease;protein_id=CAL19048.1;transl_table=11
AL590842.1	EMBL	sequence_feature	378352	378867	.	+	.	ID=id898;Note=Pfam match to entry PF00929 Exonuclease%2CExonuclease%2C score 126.60%2C E-value 4.4e-34;gbkey=misc_feature;gene=b4162;inference=protein motif:PF00929
AL590842.1	EMBL	tRNA	379434	379509	.	+	.	ID=rna8;Note=tRNA Gly anticodon GCC%2C Cove score 93.74;gbkey=tRNA;product=tRNA-Gly
AL590842.1	EMBL	exon	379434	379509	.	+	.	ID=id899;Parent=rna8;Note=tRNA Gly anticodon GCC%2C Cove score 93.74;gbkey=tRNA;product=tRNA-Gly
AL590842.1	EMBL	gene	379821	381056	.	-	.	ID=gene366;Name=YPO0367;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0367
AL590842.1	EMBL	CDS	379821	381056	.	-	0	ID=cds358;Parent=gene366;Dbxref=GOA:Q7CKM4,InterPro:IPR004453,InterPro:IPR009051,InterPro:IPR013542,InterPro:IPR017896,InterPro:IPR017900,NCBI_GP:CAL19049.1;Name=CAL19049.1;Note=Similar to several including: Vibrio cholerae iron-sulfur cluster-binding protein VC0342 TR:Q9KV16 (EMBL:AE004123) (369 aa) fasta scores: E(): 0%2C 58.7%25 id in 407 aa and Escherichia coli hypothetical protein YjeS or B4166 SW:YJES_ECOLI (P39288) (379 aa) fasta scores: E(): 0%2C74.7%25 id in 411 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004123;product=putative iron-sulfur cluster-binding protein;protein_id=CAL19049.1;transl_table=11
AL590842.1	EMBL	sequence_feature	380334	380405	.	-	.	ID=id900;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 16.90%2C E-value 0.0062;gbkey=misc_feature;inference=protein motif:PF00037
AL590842.1	EMBL	sequence_feature	380349	380384	.	-	.	ID=id901;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00198
AL590842.1	EMBL	gene	381055	382569	.	+	.	ID=gene367;Name=YPO0368;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0368
AL590842.1	EMBL	CDS	381055	382569	.	+	0	ID=cds359;Parent=gene367;Dbxref=GOA:Q7CKM3,InterPro:IPR000631,InterPro:IPR004443,InterPro:IPR029056,UniProtKB/TrEMBL:Q7CKM3,NCBI_GP:CAL19050.1;Name=CAL19050.1;Note=Similar to many proteins of unknown function e.g. Escherichia coli hypothetical protein YjeF or B4167 SW:YJEF_ECOLI (P31806) (515 aa) fasta scores: E(): 0%2C 61.0%25 id in 502 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19050.1;transl_table=11
AL590842.1	EMBL	sequence_feature	381823	382542	.	+	.	ID=id902;Note=Pfam match to entry PF01256 UPF0031%2C Uncharacterized protein family UPF0031%2C score 300.70%2C E-value 1.7e-86;gbkey=misc_feature;inference=protein motif:PF01256
AL590842.1	EMBL	gene	382580	383050	.	+	.	ID=gene368;Name=YPO0369;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0369
AL590842.1	EMBL	CDS	382580	383050	.	+	0	ID=cds360;Parent=gene368;Dbxref=GOA:Q7CKM2,InterPro:IPR003442,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CKM2,NCBI_GP:CAL19051.1;Name=CAL19051.1;Note=Similar to several proteins of undefined function e.g. Escherichia coli hypothetical protein YjeE or B4168 SW:YJEE_ECOLI (P31805) (153 aa) fasta scores: E(): 3.5e-41%2C73.026%25 id in 152 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19051.1;transl_table=11
AL590842.1	EMBL	sequence_feature	382640	382987	.	+	.	ID=id903;Note=Pfam match to entry PF02367 UPF0079%2C %2C score 187.60%2CE-value 2e-52;gbkey=misc_feature;inference=protein motif:PF02367
AL590842.1	EMBL	sequence_feature	382682	382705	.	+	.	ID=id904;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	383190	384971	.	+	.	ID=gene369;Name=YPO0370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0370
AL590842.1	EMBL	CDS	383190	384971	.	+	0	ID=cds361;Parent=gene369;Dbxref=GOA:Q0WJU0,InterPro:IPR002508,InterPro:IPR018392,InterPro:IPR021731,UniProtKB/TrEMBL:Q0WJU0,NCBI_GP:CAL19052.1;Name=CAL19052.1;Note=Similar to Escherichia coli cell wall hydrolase: N-acetylmuramoyl-L-alanine amidase amiB precursor SW:AMIB_ECOLI (P26365) (445 aa) fasta scores: E(): 4e-86%2C61.247%25 id in 449 aa. Also similar to Vibrio cholerae N-acetylmuramoyl-L-alanine amidase vc0344 TR:Q9KV14 (EMBL:AE004123) (581 aa) fasta scores: E(): 2.5e-41%2C37.605%25 id in 593 aa. Note that like the Vibrio cholerae hit the Y. pestis predicted product also possesses an additional LysM domain which may be involved in peptidoglycan binding.;gbkey=CDS;inference=similar to sequence:INSDC:AE004123;product=putative N-acetylmuramoyl-L-alanine amidase-family protein;protein_id=CAL19052.1;transl_table=11
AL590842.1	EMBL	sequence_feature	383964	384455	.	+	.	ID=id905;Note=Pfam match to entry PF01520 Amidase_3%2CN-acetylmuramoyl-L-alanine amidase%2C score 268.20%2C E-value 1.1e-76;gbkey=misc_feature;inference=protein motif:PF01520
AL590842.1	EMBL	sequence_feature	384606	384629	.	+	.	ID=id906;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	384636	384764	.	+	.	ID=id907;Note=Pfam match to entry PF01476 LysM%2C Putative peptidoglycan binding domain%2C score 59.30%2C E-value 8.5e-14;gbkey=misc_feature;inference=protein motif:PF01476
AL590842.1	EMBL	sequence_feature	384834	384962	.	+	.	ID=id908;Note=Pfam match to entry PF01476 LysM%2C Putative peptidoglycan binding domain%2C score 71.40%2C E-value 1.9e-17;gbkey=misc_feature;inference=protein motif:PF01476
AL590842.1	EMBL	sequence_feature	384852	384917	.	+	.	ID=id909;Note=Predicted helix-turn-helix motif with score 1170 (+3.17 SD) at aa 599-620%2C sequence DTLSAIAARYGVSMSEIERVNK;gbkey=misc_feature
AL590842.1	EMBL	gene	384987	386894	.	+	.	ID=gene370;Name=b4170;gbkey=Gene;gene=b4170;gene_biotype=protein_coding;gene_synonym=mutL;locus_tag=YPO0371
AL590842.1	EMBL	CDS	384987	386894	.	+	0	ID=cds362;Parent=gene370;Dbxref=GOA:Q8ZIW4,InterPro:IPR002099,InterPro:IPR003594,InterPro:IPR011186,InterPro:IPR013507,InterPro:IPR014721,InterPro:IPR014762,InterPro:IPR014790,InterPro:IPR020568,InterPro:IPR020667,NCBI_GP:CAL19053.1;Name=CAL19053.1;Note=Similar to Escherichia coli DNA mismatch repair protein MutL SW:MUTL_ECOLI (P23367) (615 aa) fasta scores: E(): 0%2C 65.0%25 id in 637 aa;gbkey=CDS;gene=b4170;product=DNA mismatch repair protein;protein_id=CAL19053.1;transl_table=11
AL590842.1	EMBL	sequence_feature	384993	385952	.	+	.	ID=id910;Note=Pfam match to entry PF01119 DNA_mis_repair%2C DNA mismatch repair protein%2C score 569.50%2C E-value 2.1e-167;gbkey=misc_feature;gene=b4170;inference=protein motif:PF01119
AL590842.1	EMBL	sequence_feature	385263	385283	.	+	.	ID=id911;Note=PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature.;gbkey=misc_feature;gene=b4170;inference=protein motif:ProSite:PS00058
AL590842.1	EMBL	gene	386887	387828	.	+	.	ID=gene371;Name=b4171;gbkey=Gene;gene=b4171;gene_biotype=protein_coding;gene_synonym=miaA,trpX;locus_tag=YPO0372
AL590842.1	EMBL	CDS	386887	387828	.	+	0	ID=cds363;Parent=gene371;Dbxref=GOA:Q8ZIW3,InterPro:IPR002627,InterPro:IPR018022,InterPro:IPR027417,NCBI_GP:CAL19054.1;Name=CAL19054.1;Note=Similar to Escherichia coli%2C and Shigella flexneri tRNA delta(2)-isopentenylpyrophosphate transferase MiaA SW:MIAA_ECOLI (P16384) (316 aa) fasta scores: E(): 0%2C 80.2%25 id in 313 aa;gbkey=CDS;gene=b4171;product=tRNA delta(2)-isopentenylpyrophosphate transferase;protein_id=CAL19054.1;transl_table=11
AL590842.1	EMBL	sequence_feature	386935	386958	.	+	.	ID=id912;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=b4171;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	387016	387780	.	+	.	ID=id913;Note=Pfam match to entry PF01715 IPPT%2C IPP transferase%2Cscore 506.50%2C E-value 2e-148;gbkey=misc_feature;gene=b4171;inference=protein motif:PF01715
AL590842.1	EMBL	gene	387944	388249	.	+	.	ID=gene372;Name=ymr;gbkey=Gene;gene=ymr;gene_biotype=protein_coding;locus_tag=YPO0373
AL590842.1	EMBL	CDS	387944	388249	.	+	0	ID=cds364;Parent=gene372;Dbxref=GOA:Q8ZIW2,InterPro:IPR001163,InterPro:IPR005001,InterPro:IPR010920,NCBI_GP:CAL19055.1;Name=CAL19055.1;Note=Similar to many regulatory proteins including: Yersinia enterocolitica multiple regulator Ymr TR:Q56928 (EMBL:D28762) (101 aa) fasta scores: E(): 0%2C 99.0%25 id in 101 aa and to Erwinia carotovora bacteriocin gene regulator TR:Q9ZI76 (EMBL:AF039142) (99 aa) fasta scores: E(): 5.2e-32%2C 88.1%25 id in 101 aa and to Escherichia coli host factor-I protein Hfq SW:HFQ_ECOLI (P25521) (101 aa) fasta scores: E(): 1.7e-28%2C 80.2%25 id in 101 aa;gbkey=CDS;gene=ymr;inference=similar to sequence:INSDC:D28762;product=yersinia multiple regulator;protein_id=CAL19055.1;transl_table=11
AL590842.1	EMBL	gene	388348	389634	.	+	.	ID=gene373;Name=hflX;gbkey=Gene;gene=hflX;gene_biotype=protein_coding;locus_tag=YPO0374
AL590842.1	EMBL	CDS	388348	389634	.	+	0	ID=cds365;Parent=gene373;Dbxref=GOA:Q7CKM1,InterPro:IPR006073,InterPro:IPR009022,InterPro:IPR016496,InterPro:IPR025121,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CKM1,NCBI_GP:CAL19056.1;Name=CAL19056.1;Note=Similar to Escherichia coli GTP-binding protein which lies within the high frequency of lysogenization locus governing the stability of the lambda cII protein%2CHflX SW:HFLX_ECOLI (P25519) (426 aa) fasta scores: E(): 0%2C84.7%25 id in 425 aa;gbkey=CDS;gene=hflX;product=GTP-binding protein;protein_id=CAL19056.1;transl_table=11
AL590842.1	EMBL	sequence_feature	388957	388980	.	+	.	ID=id914;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=hflX;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	389875	391134	.	+	.	ID=gene374;Name=hflA;gbkey=Gene;gene=hflA;gene_biotype=protein_coding;gene_synonym=hflK;locus_tag=YPO0375
AL590842.1	EMBL	CDS	389875	391134	.	+	0	ID=cds366;Parent=gene374;Dbxref=GOA:Q7CKM0,InterPro:IPR001107,InterPro:IPR001972,InterPro:IPR010201,InterPro:IPR020980,UniProtKB/TrEMBL:Q7CKM0,NCBI_GP:CAL19057.1;Name=CAL19057.1;Note=Similar to Escherichia coli HflK protein which lies within the high frequency of lysogenization locus governing the stability of the lambda cII protein SW:HFLK_ECOLI (P25662) (419 aa) fasta scores: E(): 0%2C 80.5%25 id in 420 aa;gbkey=CDS;gene=hflA;product=putative membrane protein;protein_id=CAL19057.1;transl_table=11
AL590842.1	EMBL	sequence_feature	390100	390168	.	+	.	ID=id915;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=hflA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	390112	390690	.	+	.	ID=id916;Note=Pfam match to entry PF01145 Band_7%2C SPFH domain / Band 7 family%2C score 275.80%2C E-value 5.8e-79;gbkey=misc_feature;gene=hflA;inference=protein motif:PF01145
AL590842.1	EMBL	gene	391138	392142	.	+	.	ID=gene375;Name=hflA;gbkey=Gene;gene=hflA;gene_biotype=protein_coding;gene_synonym=hflC;locus_tag=YPO0376
AL590842.1	EMBL	CDS	391138	392142	.	+	0	ID=cds367;Parent=gene375;Dbxref=GOA:Q7CKL9,InterPro:IPR001107,InterPro:IPR001972,InterPro:IPR010200,UniProtKB/TrEMBL:Q7CKL9,NCBI_GP:CAL19058.1;Name=CAL19058.1;Note=Similar to Escherichia coli HflC protein which lies within the high frequency of lysogenization locus governing the stability of the lambda cII protein SW:HFLC_ECOLI (P25661) (334 aa) fasta scores: E(): 0%2C 81.7%25 id in 334 aa;gbkey=CDS;gene=hflA;product=putative membrane protein;protein_id=CAL19058.1;transl_table=11
AL590842.1	EMBL	sequence_feature	391150	391869	.	+	.	ID=id917;Note=Pfam match to entry PF01145 Band_7%2C SPFH domain / Band 7 family%2C score 295.90%2C E-value 5e-85;gbkey=misc_feature;gene=hflA;inference=protein motif:PF01145
AL590842.1	EMBL	sequence_feature	391150	391206	.	+	.	ID=id918;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=hflA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	392314	392514	.	+	.	ID=gene376;Name=YPO0377;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0377
AL590842.1	EMBL	CDS	392314	392514	.	+	0	ID=cds368;Parent=gene376;Dbxref=InterPro:IPR019201,UniProtKB/TrEMBL:Q0WJT3,NCBI_GP:CAL19059.1;Name=CAL19059.1;Note=Similar to several proteins of unknown function including: Escherichia coli hypothetical 7.2 kDa protein in hflC-purA intergenic region YjeT SW:YJET_ECOLI (P39289) (65 aa) fasta scores: E(): 3.7e-20%2C 81.538%25 id in 65 aa and Escherichia coli O157:H7 hypothetical 7.2 kDa protein ecs5152 TR:BAB38575 (EMBL:AP002568) (65 aa) fasta scores: E(): 3.7e-20%2C 81.538%25 id in 65 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP002568;product=putative membrane protein;protein_id=CAL19059.1;transl_table=11
AL590842.1	EMBL	sequence_feature	392326	392394	.	+	.	ID=id919;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	392431	392499	.	+	.	ID=id920;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	392614	393912	.	+	.	ID=gene377;Name=adeK;gbkey=Gene;gene=adeK;gene_biotype=protein_coding;gene_synonym=purA;locus_tag=YPO0378
AL590842.1	EMBL	CDS	392614	393912	.	+	0	ID=cds369;Parent=gene377;Dbxref=GOA:Q8ZIV7,InterPro:IPR001114,InterPro:IPR018220,InterPro:IPR027417,PDB:3HID,NCBI_GP:CAL19060.1;Name=CAL19060.1;Note=Similar to Escherichia coli adenylosuccinate synthetase PurA SW:PURA_ECOLI (P12283) (431 aa) fasta scores: E(): 0%2C 88.6%25 id in 431 aa%2C and to Edwardsiella ictaluri adenylosuccinate synthetase PurA SW:PURA_EDWIC (O31047) (431 aa) fasta scores: E(): 0%2C 85.4%25 id in 431 aa;gbkey=CDS;gene=adeK;product=adenylosuccinate synthetase;protein_id=CAL19060.1;transl_table=11
AL590842.1	EMBL	sequence_feature	392629	393798	.	+	.	ID=id921;Note=Pfam match to entry PF00709 Adenylsucc_synt%2CAdenylosuccinate synthetase%2C score 943.30%2C E-value 6.3e-280;gbkey=misc_feature;gene=adeK;inference=protein motif:PF00709
AL590842.1	EMBL	sequence_feature	392644	392667	.	+	.	ID=id922;Note=PS01266 Adenylosuccinate synthetase GTP-binding site.;gbkey=misc_feature;gene=adeK;inference=protein motif:ProSite:PS01266
AL590842.1	EMBL	sequence_feature	393010	393045	.	+	.	ID=id923;Note=PS00513 Adenylosuccinate synthetase active site.;gbkey=misc_feature;gene=adeK;inference=protein motif:ProSite:PS00513
AL590842.1	EMBL	gene	394281	394706	.	+	.	ID=gene378;Name=YPO0379;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0379
AL590842.1	EMBL	CDS	394281	394706	.	+	0	ID=cds370;Parent=gene378;Dbxref=GOA:Q0WJT1,InterPro:IPR000944,InterPro:IPR011991,InterPro:IPR023761,NCBI_GP:CAL19061.1;Name=CAL19061.1;Note=Similar to Escherichia coli and Shigella flexneri hypothetical protein YjeB SW:YJEB_ECOLI (P21498) (141 aa) fasta scores: E(): 0%2C 84.4%25 id in 141 aa%2C and to Vibrio parahaemolyticus hypothetical protein YjeB SW:YJEB_VIBPA (P40610) (141 aa) fasta scores: E(): 1.4e-31%2C 61.6%25 id in 138 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19061.1;transl_table=11
AL590842.1	EMBL	sequence_feature	394281	394637	.	+	.	ID=id924;Note=Pfam match to entry PF02082 UPF0074%2C Uncharacterized protein family UPF0074%2C score 191.10%2C E-value 1.8e-53;gbkey=misc_feature;inference=protein motif:PF02082
AL590842.1	EMBL	sequence_feature	394356	394421	.	+	.	ID=id925;Note=Predicted helix-turn-helix motif with score 1116 (+2.99 SD) at aa 26-47%2C sequence TSISQVTEVYGVSRNHMVKIIN;gbkey=misc_feature
AL590842.1	EMBL	sequence_feature	394425	394481	.	+	.	ID=id926;Note=PS01332 Uncharacterized protein family UPF0074 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01332
AL590842.1	EMBL	gene	394947	397481	.	+	.	ID=gene379;Name=rnr;gbkey=Gene;gene=rnr;gene_biotype=protein_coding;gene_synonym=vacB;locus_tag=YPO0380
AL590842.1	EMBL	CDS	394947	397481	.	+	0	ID=cds371;Parent=gene379;Dbxref=GOA:Q7CKL8,InterPro:IPR003029,InterPro:IPR004476,InterPro:IPR011129,InterPro:IPR011805,InterPro:IPR012340,InterPro:IPR013223,InterPro:IPR013668,InterPro:IPR022967,UniProtKB/TrEMBL:Q7CKL8,NCBI_GP:CAL19062.1;Name=CAL19062.1;Note=Similar to Escherichia coli ribonuclease R Rnr SW:RNR_ECOLI (P21499) (813 aa) fasta scores: E(): 0%2C77.936%25 id in 843 aa%2C and to Shigella flexneri ribonuclease R Rnr SW:RNR_SHIFL (P30851) (770 aa) fasta scores: E(): 0%2C78.994%25 id in 795 aa;gbkey=CDS;gene=rnr;product=ribonuclease R;protein_id=CAL19062.1;transl_table=11
AL590842.1	EMBL	sequence_feature	395490	396596	.	+	.	ID=id927;Note=Pfam match to entry PF00773 RNB%2C RNB-like proteins%2Cscore 528.90%2C E-value 3.6e-155;gbkey=misc_feature;gene=rnr;inference=protein motif:PF00773
AL590842.1	EMBL	sequence_feature	396867	397124	.	+	.	ID=id928;Note=Pfam match to entry PF00575 S1%2C S1 RNA binding domain%2C score 68.80%2C E-value 2.2e-17;gbkey=misc_feature;gene=rnr;inference=protein motif:PF00575
AL590842.1	EMBL	gene	397600	398340	.	+	.	ID=gene380;Name=YPO0381;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0381
AL590842.1	EMBL	CDS	397600	398340	.	+	0	ID=cds372;Parent=gene380;Dbxref=GOA:Q8ZIV4,InterPro:IPR001537,InterPro:IPR004441,InterPro:IPR013123,InterPro:IPR024915,InterPro:IPR029026,InterPro:IPR029028,InterPro:IPR029064,NCBI_GP:CAL19063.1;Name=CAL19063.1;Note=Similar to Escherichia coli hypothetical tRNA/rRNA methyltransferase YjfH SW:YJFH_ECOLI (P39290) (243 aa) fasta scores: E(): 0%2C 81.8%25 id in 242 aa%2C and to Haemophilus influenzae hypothetical tRNA/rRNA methyltransferase HI0860 SW:YJFH_HAEIN (P44906) (246 aa) fasta scores: E(): 0%2C 70.4%25 id in 243 aa;gbkey=CDS;product=putative methylase;protein_id=CAL19063.1;transl_table=11
AL590842.1	EMBL	sequence_feature	397882	398307	.	+	.	ID=id929;Note=Pfam match to entry PF00588 SpoU_methylase%2C SpoU rRNA Methylase family%2C score 215.80%2C E-value 6.6e-61;gbkey=misc_feature;inference=protein motif:PF00588
AL590842.1	EMBL	gene	398748	400391	.	+	.	ID=gene381;Name=aidB;gbkey=Gene;gene=aidB;gene_biotype=protein_coding;locus_tag=YPO0383
AL590842.1	EMBL	CDS	398748	400391	.	+	0	ID=cds373;Parent=gene381;Dbxref=GOA:Q0WJS8,InterPro:IPR006089,InterPro:IPR006091,InterPro:IPR009075,InterPro:IPR009100,UniProtKB/TrEMBL:Q0WJS8,NCBI_GP:CAL19064.1;Name=CAL19064.1;Note=Similar to Escherichia coli probable CoA dehydrogenase protein AidB SW:AIDB_ECOLI (P33224) (546 aa) fasta scores: E(): 0%2C 69.5%25 id in 541 aa%2C and to Pseudomonas aeruginosa probable acyl-CoA dehydrogenase PA3972 TR:AAG07359 (EMBL:AE004815) (549 aa) fasta scores: E(): 0%2C 44.8%25 id in 542 aa. Possible alternative translational start site;gbkey=CDS;gene=aidB;inference=similar to sequence:INSDC:AE004815;product=putative acyl-CoA dehydrogenase;protein_id=CAL19064.1;transl_table=11
AL590842.1	EMBL	sequence_feature	398907	400082	.	+	.	ID=id930;Note=Pfam match to entry PF00441 Acyl-CoA_dh%2C Acyl-CoA dehydrogenase%2C score 422.60%2C E-value 3.5e-123;gbkey=misc_feature;gene=aidB;inference=protein motif:PF00441
AL590842.1	EMBL	sequence_feature	399306	399344	.	+	.	ID=id931;Note=PS00072 Acyl-CoA dehydrogenases signature 1.;gbkey=misc_feature;gene=aidB;inference=protein motif:ProSite:PS00072
AL590842.1	EMBL	gene	400463	400774	.	-	.	ID=gene382;Name=YPO0384;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0384
AL590842.1	EMBL	CDS	400463	400774	.	-	0	ID=cds374;Parent=gene382;Dbxref=InterPro:IPR010854,InterPro:IPR025543,UniProtKB/TrEMBL:Q0WJS7,NCBI_GP:CAL19065.1;Name=CAL19065.1;Note=Similar to Escherichia coli hypothetical lipoprotein YjfO SW:YJFO_ECOLI (P39297) (142 aa) fasta scores: E(): 1.8e-13%2C 43.5%25 id in 108 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative lipoprotein;protein_id=CAL19065.1;transl_table=11
AL590842.1	EMBL	sequence_feature	400469	400534	.	-	.	ID=id932;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	400688	400753	.	-	.	ID=id933;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	400715	400747	.	-	.	ID=id934;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	repeat_region	401048	403001	.	-	.	ID=id935;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	401048	401075	.	+	.	ID=id936;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	401114	401896	.	-	.	ID=gene383;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO0385
AL590842.1	EMBL	CDS	401114	401896	.	-	0	ID=cds375;Parent=gene383;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL19066.1;Name=CAL19066.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL19066.1;transl_table=11
AL590842.1	EMBL	sequence_feature	401189	401728	.	-	.	ID=id937;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	401546	401569	.	-	.	ID=id938;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	401893	402915	.	-	.	ID=gene384;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO0386
AL590842.1	EMBL	CDS	401893	402915	.	-	0	ID=cds376;Parent=gene384;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL19067.1;Name=CAL19067.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL19067.1;transl_table=11
AL590842.1	EMBL	sequence_feature	402037	402570	.	-	.	ID=id939;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	sequence_feature	402799	402864	.	-	.	ID=id940;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	402808	402891	.	-	.	ID=id941;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	INVERTED	402974	403001	.	-	.	ID=id942;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	403049	405112	.	+	.	ID=gene385;Name=YPO0387;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0387
AL590842.1	EMBL	CDS	403049	405112	.	+	0	ID=cds377;Parent=gene385;Dbxref=GOA:Q74PU0,InterPro:IPR003593,InterPro:IPR011704,InterPro:IPR027417,UniProtKB/TrEMBL:Q74PU0,NCBI_GP:CAL19068.1;Name=CAL19068.1;Note=C-terminal region is similar to the C-terminus of Escherichia coli 5-methylcytosine-specific restriction enzyme B McrB SW:MCRB_ECOLI (P15005) (459 aa) fasta scores: E(): 9.5e-12%2C 36.0%25 id in 211 aa. Internal region of the CDS is similar to the C-terminus of Deinococcus radiodurans McrB-related protein DRB0143 TR:Q9RZI5 (EMBL:AE001826) (969 aa) fasta scores: E(): 6.4e-30%2C 35.5%25 id in 498 aa. Possible gene remnant;gbkey=CDS;inference=similar to sequence:INSDC:AE001826;product=hypothetical protein;protein_id=CAL19068.1;transl_table=11
AL590842.1	EMBL	sequence_feature	403751	403774	.	+	.	ID=id943;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	405109	406425	.	+	.	ID=gene386;Name=YPO0388;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0388
AL590842.1	EMBL	CDS	405109	406425	.	+	0	ID=cds378;Parent=gene386;Dbxref=InterPro:IPR019292,UniProtKB/TrEMBL:Q7CG32,NCBI_GP:CAL19069.1;Name=CAL19069.1;Note=Similar to Deinococcus radiodurans hypothetical protein DRB0144 TR:Q9RZI4 (EMBL:AE001826) (442 aa) fasta scores: E(): 7.1e-30%2C 30.4%25 id in 395 aa%2C and to Campylobacter jejuni hypothetical protein CJ0140 TR:Q9PIY7 (EMBL:AL139074) (443 aa) fasta scores: E(): 2.9e-21%2C 28.8%25 id in 382 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL139074;product=conserved hypothetical protein;protein_id=CAL19069.1;transl_table=11
AL590842.1	EMBL	gene	406492	406722	.	+	.	ID=gene387;Name=YPO0389;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0389
AL590842.1	EMBL	CDS	406492	406722	.	+	0	ID=cds379;Parent=gene387;Dbxref=UniProtKB/TrEMBL:Q74PU2,NCBI_GP:CAL19070.1;Name=CAL19070.1;Note=Doubtful CDS. No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19070.1;transl_table=11
AL590842.1	EMBL	gene	406969	407436	.	+	.	ID=gene388;Name=YPO0390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0390
AL590842.1	EMBL	CDS	406969	407436	.	+	0	ID=cds380;Parent=gene388;Dbxref=UniProtKB/TrEMBL:Q7CG33,NCBI_GP:CAL19071.1;Name=CAL19071.1;Note=No significant database hits to the full length CDS. Similar to an internal region of Rhizobium sp insertion element ISR1 hypothetical protein A SW:YIA_RHISP (P17986) (278 aa) fasta scores: E(): 0.033%2C 37.2%25 id in 86 aa;gbkey=CDS;product=hypothetical protein;protein_id=CAL19071.1;transl_table=11
AL590842.1	EMBL	sequence_feature	407444	411230	.	+	.	ID=id944;Note=Region of low GC%25 content%2C 30.41%25. Possible horizontal gene transfer;gbkey=misc_feature
AL590842.1	EMBL	gene	407449	408774	.	+	.	ID=gene389;Name=YPO0391;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0391
AL590842.1	EMBL	CDS	407449	408774	.	+	0	ID=cds381;Parent=gene389;Dbxref=GOA:Q7CG34,InterPro:IPR029063,UniProtKB/TrEMBL:Q7CG34,NCBI_GP:CAL19072.1;Name=CAL19072.1;Note=Similar to Micrococcus varians modification methylase MvaI SW:MTMV_MICVA (P14244) (454 aa) fasta scores: E(): 0%2C 29.6%25 id in 456 aa%2C and to Pyrococcus sp GI-H PspGI restriction-modification system methylase TR:O93645 (EMBL:AF067805) (433 aa) fasta scores: E(): 1.6e-21%2C 30.3%25 id in 458 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF067805;product=modification methylase;protein_id=CAL19072.1;transl_table=11
AL590842.1	EMBL	gene	408824	409546	.	+	.	ID=gene390;Name=YPO0392;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0392
AL590842.1	EMBL	CDS	408824	409546	.	+	0	ID=cds382;Parent=gene390;Dbxref=InterPro:IPR003594,UniProtKB/TrEMBL:Q7CG35,NCBI_GP:CAL19073.1;Name=CAL19073.1;Note=Similar to N-terminal regions of Neisseria meningitidis hypothetical protein NMA0428 TR:Q9JWD7 (EMBL:AL162753) (548 aa) fasta scores: E(): 6.4e-07%2C 27.7%25 id in 260 aa%2C and to Campylobacter jejuni Hsp90 family heat shock protein HtpG TR:Q9PHZ3 (EMBL:AL139075) (608 aa) fasta scores: E(): 0.23%2C 25.1%25 id in 251 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL162753;product=hypothetical protein;protein_id=CAL19073.1;transl_table=11
AL590842.1	EMBL	gene	409656	410891	.	+	.	ID=gene391;Name=YPO0393;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0393
AL590842.1	EMBL	CDS	409656	410891	.	+	0	ID=cds383;Parent=gene391;Dbxref=UniProtKB/TrEMBL:Q0WJR8,NCBI_GP:CAL19074.1;Name=CAL19074.1;Note=Poor database hits%2C similar to internal regions of Caenorhabditis elegans hypothetical protein ZC53.4 TR:Q23371 (EMBL:U47144) (1410 aa) fasta scores: E(): 1.3%2C21.6%25 id in 375 aa%2C and Ureaplasma parvum hypothetical protein UU293 TR:Q9PQJ8 (EMBL:AE002126) (1447 aa) fasta scores: E(): 4.8%2C 21.4%25 id in 415 aa;gbkey=CDS;inference=similar to sequence:INSDC:U47144;product=hypothetical protein;protein_id=CAL19074.1;transl_table=11
AL590842.1	EMBL	sequence_feature	410610	410675	.	+	.	ID=id945;Note=Predicted helix-turn-helix motif with score 1280 (+3.55 SD) at aa 319-340%2C sequence KLLTKIAERLDISYSTFTNSLN;gbkey=misc_feature
AL590842.1	EMBL	gene	411235	411522	.	-	.	ID=gene392;Name=YPO0394;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0394
AL590842.1	EMBL	CDS	411235	411522	.	-	0	ID=cds384;Parent=gene392;Dbxref=UniProtKB/TrEMBL:Q7CG36,NCBI_GP:CAL19075.1;Name=CAL19075.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19075.1;transl_table=11
AL590842.1	EMBL	gene	411962	412054	.	+	.	ID=gene393;Name=YPO0395;end_range=412054,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0395;partial=true;start_range=.,411962
AL590842.1	EMBL	CDS	411962	412054	.	+	0	ID=cds385;Parent=gene393;Dbxref=UniProtKB/TrEMBL:Q7CG37,NCBI_GP:CAL19076.1;Name=CAL19076.1;Note=Probable gene remnant. Similar to N-terminal region of Yersinia pestis probable transposase remnant protein YPCD1.03C TR:Q9RI27 (EMBL:AL117189) (83 aa) fasta scores: E(): 2.5e-09%2C 96.0%25 id in 25 aa%2C and to Escherichia coli transposase IS21 TR:O82915 (EMBL:AB011549) (136 aa) fasta scores: E(): 4.9e-09%2C 92.0%25 id in 25 aa%3B~was marked partial;end_range=412054,.;gbkey=CDS;inference=similar to sequence:INSDC:AL117189;partial=true;product=transposase (partial);protein_id=CAL19076.1;start_range=.,411962;transl_table=11
AL590842.1	EMBL	gene	412139	413551	.	+	.	ID=gene394;Name=YPO0396;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0396
AL590842.1	EMBL	CDS	412139	413551	.	+	0	ID=cds386;Parent=gene394;Dbxref=InterPro:IPR027417,UniProtKB/TrEMBL:Q0WJR5,NCBI_GP:CAL19077.1;Name=CAL19077.1;Note=Similar to C-terminal regions of Xylella fastidiosa hypothetical protein XF2734 TR:Q9P9Y6 (EMBL:AE004080) (1144 aa) fasta scores: E(): 0.00014%2C 24.4%25 id in 468 aa%2C and Aeropyrum pernix hypothetical protein APE0110 TR:Q9YFZ1 (EMBL:AP000058) (919 aa) fasta scores: E(): 0.048%2C 23.2%25 id in 452 aa. Contains coil-coiled domain at approx. residues 68 to 97;gbkey=CDS;inference=similar to sequence:INSDC:AP000058;product=hypothetical protein;protein_id=CAL19077.1;transl_table=11
AL590842.1	EMBL	gene	413548	414702	.	+	.	ID=gene395;Name=YPO0397;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0397
AL590842.1	EMBL	CDS	413548	414702	.	+	0	ID=cds387;Parent=gene395;Dbxref=InterPro:IPR014544,InterPro:IPR024534,InterPro:IPR024537,UniProtKB/TrEMBL:Q7CG38,NCBI_GP:CAL19078.1;Name=CAL19078.1;Note=Weak database hits to the full length CDS. Similar to Xylella fastidiosa hypothetical protein XF2735 TR:Q9P9Y5 (EMBL:AE004080) (401 aa) fasta scores: E(): 8.3e-09%2C 27.8%25 id in 389 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004080;product=hypothetical protein;protein_id=CAL19078.1;transl_table=11
AL590842.1	EMBL	gene	414848	415894	.	-	.	ID=gene396;Name=YPO0398;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0398
AL590842.1	EMBL	CDS	414848	415894	.	-	0	ID=cds388;Parent=gene396;Dbxref=GOA:Q7CG39,InterPro:IPR001915,UniProtKB/TrEMBL:Q7CG39,NCBI_GP:CAL19079.1;Name=CAL19079.1;Note=Similar to Deinococcus radiodurans conserved hypothetical protein DR0190 TR:Q9RXW5 (EMBL:AE001881) (402 aa) fasta scores: E(): 1.2e-07%2C 26.6%25 id in 379 aa. C-terminal region is similar to the N-terminus of Myxococcus xanthus hypothetical protein TR:O30615 (EMBL:AF013216) (478 aa) fasta scores: E(): 4.6e-07%2C 23.7%25 id in 253 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF013216;product=M48 peptidase family protein;protein_id=CAL19079.1;transl_table=11
AL590842.1	EMBL	sequence_feature	414881	415393	.	-	.	ID=id946;Note=Pfam match to entry PF01435 Peptidase_M48%2C Peptidase family M48%2C score -12.20%2C E-value 3.6e-05;gbkey=misc_feature;inference=protein motif:PF01435
AL590842.1	EMBL	sequence_feature	415541	415606	.	-	.	ID=id947;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	415905	417101	.	-	.	ID=gene397;Name=YPO0399;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0399
AL590842.1	EMBL	CDS	415905	417101	.	-	0	ID=cds389;Parent=gene397;Dbxref=InterPro:IPR010295,UniProtKB/TrEMBL:Q7CG40,NCBI_GP:CAL19080.1;Name=CAL19080.1;Note=Similar to Escherichia coli hypothetical protein YjgN SW:YJGN_ECOLI (P39338) (393 aa) fasta scores: E(): 2.5e-30%2C 30.9%25 id in 379 aa%2C and to Salmonella typhimurium hypothetical protein YjgN SW:YJGN_SALTY (Q08022) (314 aa) fasta scores: E(): 1.8e-26%2C 30.7%25 id in 316 aa. S. typhimurium protein appears to be truncated at the C-terminus in comparison to E. coli and Y. pestis proteins;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL19080.1;transl_table=11
AL590842.1	EMBL	sequence_feature	416052	416117	.	-	.	ID=id948;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	416220	416285	.	-	.	ID=id949;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	416346	416411	.	-	.	ID=id950;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	416505	416570	.	-	.	ID=id951;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	416616	416681	.	-	.	ID=id952;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	416745	416810	.	-	.	ID=id953;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	416826	416882	.	-	.	ID=id954;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	416967	417032	.	-	.	ID=id955;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	417807	418343	.	+	.	ID=gene398;Name=YPO0400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0400
AL590842.1	EMBL	CDS	417807	418343	.	+	0	ID=cds390;Parent=gene398;Dbxref=GOA:Q7CG41,InterPro:IPR023802,UniProtKB/TrEMBL:Q7CG41,NCBI_GP:CAL19081.1;Name=CAL19081.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19081.1;transl_table=11
AL590842.1	EMBL	gene	418345	419220	.	+	.	ID=gene399;Name=YPO0401;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0401
AL590842.1	EMBL	CDS	418345	419220	.	+	0	ID=cds391;Parent=gene399;Dbxref=GOA:Q7CG42,InterPro:IPR009057,InterPro:IPR018060,InterPro:IPR018062,InterPro:IPR020449,UniProtKB/TrEMBL:Q7CG42,NCBI_GP:CAL19082.1;Name=CAL19082.1;Note=Similar to Salmonella typhimurium regulatory protein PocR SW:POCR_SALTY (Q05587) (303 aa) fasta scores: E(): 2.8e-09%2C 38.4%25 id in 112 aa and to Escherichia coli hypothetical transcriptional regulator YioO SW:YIJO_ECOLI (P32677) (283 aa) fasta scores: E(): 0%2C 53.9%25 id in 280 aa;gbkey=CDS;product=putative transcriptional regulator;protein_id=CAL19082.1;transl_table=11
AL590842.1	EMBL	sequence_feature	418927	419187	.	+	.	ID=id956;Note=Pfam match to entry PF00165 HTH_AraC%2C Bacterial regulatory helix-turn-helix proteins%2C araC family%2C score 111.60%2C E-value 1.5e-29;gbkey=misc_feature;inference=protein motif:PF00165
AL590842.1	EMBL	sequence_feature	418930	418995	.	+	.	ID=id957;Note=Predicted helix-turn-helix motif with score 1868 (+5.55 SD) at aa 196-217%2C sequence LTRESVAHVFHISPNYLSHLFR;gbkey=misc_feature
AL590842.1	EMBL	sequence_feature	419038	419166	.	+	.	ID=id958;Note=PS00041 Bacterial regulatory proteins%2C araC family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00041
AL590842.1	EMBL	gene	419213	419557	.	-	.	ID=gene400;Name=YPO0402;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0402
AL590842.1	EMBL	CDS	419213	419557	.	-	0	ID=cds392;Parent=gene400;Dbxref=GOA:Q0WJQ9,InterPro:IPR003353,InterPro:IPR003501,InterPro:IPR013011,UniProtKB/TrEMBL:Q0WJQ9,NCBI_GP:CAL19083.1;Name=CAL19083.1;Note=Similar to many carbohydrate phosphotransferase system IIB components e.g. Escherichia coli PTS system%2Cfructose-like-2 IIB component 2 FrwD SW:PTWX_ECOLI (P32676) (113 aa) fasta scores: E(): 3.2e-23%2C 52.7%25 id in 110 aa;gbkey=CDS;product=PTS system%2C IIB component;protein_id=CAL19083.1;transl_table=11
AL590842.1	EMBL	sequence_feature	419237	419548	.	-	.	ID=id959;Note=Pfam match to entry PF02379 PTS_IIB_fruc%2C %2C score 143.20%2C E-value 4.7e-39;gbkey=misc_feature;inference=protein motif:PF02379
AL590842.1	EMBL	gene	419650	419970	.	-	.	ID=gene401;Name=YPO0403;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0403
AL590842.1	EMBL	CDS	419650	419970	.	-	0	ID=cds393;Parent=gene401;Dbxref=GOA:Q7CG43,InterPro:IPR003353,InterPro:IPR003501,InterPro:IPR013011,UniProtKB/TrEMBL:Q7CG43,NCBI_GP:CAL19084.1;Name=CAL19084.1;Note=Similar to many carbohydrate phosphotransferase IIB components e.g. Escherichia coli PTS system%2Cfructose-like-2 IIB component 1 FrwB%2C SW:PTWB_ECOLI (P32673) (106 aa) fasta scores: E(): 0%2C 82.7%25 id in 104 aa. Similar to part of Rhodobacter capsulatus PTS system%2Cfructose-specific IIBC component FruA SW:PTFB_RHOCA (P23387) (578 aa) fasta scores: E(): 6.3e-16%2C 47.4%25 id in 97 aa and to Escherichia coli PTS system%2C fructose-specific IIBC component FruA%2C PtsF%2C SW:PTFB_ECOLI (P20966) (563 aa) fasta scores: E(): 1e-15%2C 49.5%25 id in 97 aa;gbkey=CDS;product=PTS system%2C IIB component;protein_id=CAL19084.1;transl_table=11
AL590842.1	EMBL	sequence_feature	419653	419964	.	-	.	ID=id960;Note=Pfam match to entry PF02379 PTS_IIB_fruc%2C %2C score 196.20%2C E-value 5e-55;gbkey=misc_feature;inference=protein motif:PF02379
AL590842.1	EMBL	gene	420311	421396	.	-	.	ID=gene402;Name=YPO0404;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0404
AL590842.1	EMBL	CDS	420311	421396	.	-	0	ID=cds394;Parent=gene402;Dbxref=GOA:Q7CG44,InterPro:IPR003352,InterPro:IPR006327,InterPro:IPR013014,UniProtKB/TrEMBL:Q7CG44,NCBI_GP:CAL19085.1;Name=CAL19085.1;Note=Similar to many carbohydrate phosphotransferase IIC components e.g. part of Escherichia coli PTS system%2Cfructose-specific IIBC component FruA SW:PTFB_ECOLI (P20966) (563 aa) fasta scores: E(): 0%2C 40.7%25 id in 329 aa and to Escherichia coli PTS system%2C fructose-like-2 IIC component FrwC SW:PTWC_ECOLI (P32672) (359 aa) fasta scores: E(): 0%2C 76.5%25 id in 358 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=PTS system%2C IIC component;protein_id=CAL19085.1;transl_table=11
AL590842.1	EMBL	sequence_feature	420392	420448	.	-	.	ID=id961;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	420479	420544	.	-	.	ID=id962;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	420539	420571	.	-	.	ID=id963;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	420548	421342	.	-	.	ID=id964;Note=Pfam match to entry PF02378 PTS_EIIC%2C %2C score 86.60%2CE-value 5.2e-22;gbkey=misc_feature;inference=protein motif:PF02378
AL590842.1	EMBL	sequence_feature	420686	420751	.	-	.	ID=id965;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	420812	420868	.	-	.	ID=id966;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	420932	420997	.	-	.	ID=id967;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	421043	421108	.	-	.	ID=id968;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	421148	421213	.	-	.	ID=id969;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	421274	421339	.	-	.	ID=id970;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	421758	424316	.	+	.	ID=gene403;Name=YPO0405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0405
AL590842.1	EMBL	CDS	421758	424316	.	+	0	ID=cds395;Parent=gene403;Dbxref=GOA:Q0WJQ6,InterPro:IPR000032,InterPro:IPR000121,InterPro:IPR001020,InterPro:IPR002178,InterPro:IPR006318,InterPro:IPR008279,InterPro:IPR008731,InterPro:IPR015813,InterPro:IPR016152,InterPro:IPR018274,InterPro:IPR023151,UniProtKB/TrEMBL:Q0WJQ6,NCBI_GP:CAL19086.1;Name=CAL19086.1;Note=Similar to e.g. Escherichia coli phosphoenolpyruvate-protein phosphotransferase PtsI%2CSW:PT1_ECOLI (P08839) (575 aa) fasta scores: E(): 0%2C 36.0%25 id in 583 aa%2C but has both N- and C-terminal extensions. Also similar to Escherichia coli phosphoenolpyruvate-protein phosphotransferase PtsA%2CSW:PT1A_ECOLI (P32670) (711 aa) fasta scores: E(): 0%2C 64.5%25 id in 726 aa and to Escherichia coli putative phosphoenolpyruvate-protein phosphotransferase YpdD%2CSW:YPDD_ECOLI (P77439) (831 aa) fasta scores: E(): 0%2C 41.5%25 id in 853 aa;gbkey=CDS;product=putative phosphoenolpyruvate-protein phosphotransferase;protein_id=CAL19086.1;transl_table=11
AL590842.1	EMBL	sequence_feature	421797	421820	.	+	.	ID=id971;Note=PS00369 PTS HPR component histidine phosphorylation site signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00369
AL590842.1	EMBL	sequence_feature	421881	421904	.	+	.	ID=id972;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	422619	423662	.	+	.	ID=id973;Note=Pfam match to entry PF00391 PEP-utilizers%2CPEP-utilizing enzymes%2C score 499.90%2C E-value 2e-146;gbkey=misc_feature;inference=protein motif:PF00391
AL590842.1	EMBL	sequence_feature	422700	422735	.	+	.	ID=id974;Note=PS00370 PEP-utilizing enzymes phosphorylation site signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00370
AL590842.1	EMBL	sequence_feature	423489	423545	.	+	.	ID=id975;Note=PS00742 PEP-utilizing enzymes signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00742
AL590842.1	EMBL	sequence_feature	424011	424121	.	+	.	ID=id976;Note=Pfam match to entry PF00359 PTS_EIIA_2%2Cphosphoenolpyruvate-dependent sugar phosphotransferase system%2C EIIA 2%2C score 18.20%2C E-value 0.0015;gbkey=misc_feature;inference=protein motif:PF00359
AL590842.1	EMBL	gene	424378	424869	.	-	.	ID=gene404;Name=YPO0406;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0406
AL590842.1	EMBL	CDS	424378	424869	.	-	0	ID=cds396;Parent=gene404;Dbxref=InterPro:IPR019637,UniProtKB/TrEMBL:Q7CG45,NCBI_GP:CAL19087.1;Name=CAL19087.1;Note=Similar to Escherichia coli hypothetical protein YjjA SW:YJJA_ECOLI (P18390) (165 aa) fasta scores: E(): 4.3e-21%2C 45.6%25 id in 158 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL19087.1;transl_table=11
AL590842.1	EMBL	gene	425170	425460	.	-	.	ID=gene405;Name=YPO0407;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0407
AL590842.1	EMBL	CDS	425170	425460	.	-	0	ID=cds397;Parent=gene405;Dbxref=GOA:Q7CG46,InterPro:IPR007138,InterPro:IPR011008,PDB:2GFF,NCBI_GP:CAL19088.1;Name=CAL19088.1;Note=Similar to e.g. Escherichia coli hypothetical protein YneC SW:YNEC_ECOLI (P76144) (96 aa) fasta scores: E(): 2.6e-30%2C 75.0%25 id in 96 aa and to Pseudomonas aeruginosa hypothetical protein PA0709 TR:AAG04098 (EMBL:AE004506) (98 aa) fasta scores: E(): 1.5e-05%2C 40.2%25 id in 87 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004506;product=conserved hypothetical protein;protein_id=CAL19088.1;transl_table=11
AL590842.1	EMBL	gene	425524	426399	.	-	.	ID=gene406;Name=YPO0408;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0408
AL590842.1	EMBL	CDS	425524	426399	.	-	0	ID=cds398;Parent=gene406;Dbxref=GOA:Q7CG47,InterPro:IPR002915,InterPro:IPR013785,NCBI_GP:CAL19089.1;Name=CAL19089.1;Note=Similar to many putative aldolases e.g. Escherichia coli putative aldolase YneB%2C SW:YNEB_ECOLI (P76143) (291 aa) fasta scores: E(): 0%2C 83.8%25 id in 290 aa;gbkey=CDS;product=putative aldolase;protein_id=CAL19089.1;transl_table=11
AL590842.1	EMBL	sequence_feature	425578	426252	.	-	.	ID=id977;Note=Pfam match to entry PF01791 DeoC%2CDeoxyribose-phosphate aldolase%2C score -1.80%2C E-value 8.7e-07;gbkey=misc_feature;inference=protein motif:PF01791
AL590842.1	EMBL	gene	426455	427474	.	-	.	ID=gene407;Name=YPO0409;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0409
AL590842.1	EMBL	CDS	426455	427474	.	-	0	ID=cds399;Parent=gene407;Dbxref=GOA:Q74PW2,InterPro:IPR025997,InterPro:IPR028082,PDB:3T95,NCBI_GP:CAL19090.1;Name=CAL19090.1;Note=Similar to many ABC transport binding proteins e.g. Escherichia coli D-allose-binding periplasmic protein precursor AlsB SW:ALSB_ECOLI (P39265) (311 aa) fasta scores: E(): 3.4e-06%2C 24.4%25 id in 299 aa and to Escherichia coli hypothetical protein TR:P76142 (EMBL:AE000249) (340 aa) fasta scores: E(): 0%2C 84.4%25 id in 340 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE000249;product=putative periplasmic solute-binding protein;protein_id=CAL19090.1;transl_table=11
AL590842.1	EMBL	sequence_feature	427382	427447	.	-	.	ID=id978;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	427418	427450	.	-	.	ID=id979;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	ribosome_entry_site	427481	427484	.	-	.	ID=id980;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	427540	428541	.	-	.	ID=gene408;Name=YPO0410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0410
AL590842.1	EMBL	CDS	427540	428541	.	-	0	ID=cds400;Parent=gene408;Dbxref=GOA:Q7CG48,InterPro:IPR001851,NCBI_GP:CAL19091.1;Name=CAL19091.1;Note=Similar to many ABC transporter permeases e.g. Bacillus subtilis ribose transport system permease protein RbsC SW:RBSC_BACSU (P36948) (323 aa) fasta scores: E(): 7.1e-26%2C 32.7%25 id in 300 aa and to Escherichia coli hypothetical ABC transporter permease protein YdeZ SW:YDEZ_ECOLI (P77651) (330 aa) fasta scores: E(): 0%2C 81.3%25 id in 321 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative ABC transporter permease protein;protein_id=CAL19091.1;transl_table=11
AL590842.1	EMBL	sequence_feature	427603	427659	.	-	.	ID=id981;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	427699	427791	.	-	.	ID=id982;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	427837	427902	.	-	.	ID=id983;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	427993	428058	.	-	.	ID=id984;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	428119	428184	.	-	.	ID=id985;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	428206	428271	.	-	.	ID=id986;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	428284	428346	.	-	.	ID=id987;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	428368	428433	.	-	.	ID=id988;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	428464	428520	.	-	.	ID=id989;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	428538	429593	.	-	.	ID=gene409;Name=YPO0411;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0411
AL590842.1	EMBL	CDS	428538	429593	.	-	0	ID=cds401;Parent=gene409;Dbxref=GOA:Q7CG49,InterPro:IPR001851,NCBI_GP:CAL19092.1;Name=CAL19092.1;Note=Similar to many ABC transporter permeases e.g. Escherichia coli ribose transport system permease protein RbsC SW:RBSC_ECOLI (P04984) (321 aa) fasta scores: E(): 2.3e-25%2C 33.2%25 id in 307 aa and to Escherichia coli hypothetical ABC transporter permease protein YdeY SW:YDEY_ECOLI (P77672) (342 aa) fasta scores: E(): 0%2C 75.7%25 id in 350 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative ABC transporter permease protein;protein_id=CAL19092.1;transl_table=11
AL590842.1	EMBL	sequence_feature	428691	428756	.	-	.	ID=id990;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	428778	428843	.	-	.	ID=id991;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	428904	428969	.	-	.	ID=id992;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	429063	429128	.	-	.	ID=id993;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	429189	429254	.	-	.	ID=id994;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	429270	429335	.	-	.	ID=id995;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	429318	429350	.	-	.	ID=id996;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	429348	429398	.	-	.	ID=id997;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	429420	429485	.	-	.	ID=id998;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	429498	429554	.	-	.	ID=id999;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	429587	431170	.	-	.	ID=gene410;Name=YPO0412;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0412
AL590842.1	EMBL	CDS	429587	431170	.	-	0	ID=cds402;Parent=gene410;Dbxref=GOA:Q0WJP9,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,NCBI_GP:CAL19093.1;Name=CAL19093.1;Note=Similar to many ABC transporter ATP-binding proteins e.g. Escherichia coli putative ABC transporter ATP-binding protein Ego SW:EGO_ECOLI (P77257) (511 aa) fasta scores: E(): 0%2C 66.0%25 id in 497 aa and to Bacillus stearothermophilus L-arabinose transport%2C ATP binding protein AraG TR:Q9S472 (EMBL:AF160811) (513 aa) fasta scores: E(): 0%2C 35.7%25 id in 507 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF160811;product=putative ABC transporter ATP-binding protein;protein_id=CAL19093.1;transl_table=11
AL590842.1	EMBL	sequence_feature	429725	430297	.	-	.	ID=id1000;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 101.80%2C E-value 1.4e-26;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	429908	429952	.	-	.	ID=id1001;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	430523	431062	.	-	.	ID=id1002;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 165.90%2C E-value 6.8e-46;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	431018	431041	.	-	.	ID=id1003;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	431280	431591	.	-	.	ID=gene411;Name=YPO0413;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0413
AL590842.1	EMBL	CDS	431280	431591	.	-	0	ID=cds403;Parent=gene411;Dbxref=UniProtKB/TrEMBL:Q74PW6,NCBI_GP:CAL19094.1;Name=CAL19094.1;Note=Doubtfull CDS. No significant database matches;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL19094.1;transl_table=11
AL590842.1	EMBL	sequence_feature	431289	431354	.	-	.	ID=id1004;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	431400	431465	.	-	.	ID=id1005;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	431481	431546	.	-	.	ID=id1006;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	pseudogene	431515	432502	.	+	.	ID=gene412;Name=YPO0414;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO0414;pseudo=true
AL590842.1	EMBL	CDS	431515	432502	.	+	0	ID=cds404;Parent=gene412;Note=Similar to Bacillus subtilis deoxyribonucleoside regulator DeoR SW:DEOR_BACSU (P39140) (313 aa) fasta scores: E(): 5.9e-18%2C 29.936%25 id in 314 aa%2C and to Escherichia coli hypothetical transcriptional regulator in hipB-uxaB intergenic region YdeW SW:YDEW_ECOLI (P76141) (317 aa) fasta scores: E(): 1.7e-78%2C 66.997%25 id in 303 aa. There is a frameshift around codon 73. The sequence has been checked and is believed to be correct;gbkey=CDS;product=putative transcriptional regulator (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	432673	434265	.	+	.	ID=gene413;Name=YPO0415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0415
AL590842.1	EMBL	CDS	432673	434265	.	+	0	ID=cds405;Parent=gene413;Dbxref=GOA:Q0WJP7,InterPro:IPR018484,InterPro:IPR018485,NCBI_GP:CAL19096.1;Name=CAL19096.1;Note=Similar to carbohydrate kinases e.g. Bacillus subtilis gluconokinase GntK%2C SW:GNTK_BACSU (P12011) (513 aa) fasta scores: E(): 1.2e-26%2C 26.250%25 id in 480 aa and Escherichia coli hypothetical sugar kinase YdeV%2CSW:YDEV_ECOLI (P77432) (530 aa) fasta scores: E(): 2.7e-181%2C 78.302%25 id in 530 aa;gbkey=CDS;product=putative carbohydrate kinase;protein_id=CAL19096.1;transl_table=11
AL590842.1	EMBL	sequence_feature	433117	433485	.	+	.	ID=id1007;Note=Pfam match to entry PF00370 FGGY%2C FGGY family of carbohydrate kinases%2C score 119.30%2C E-value 7.3e-32;gbkey=misc_feature;inference=protein motif:PF00370
AL590842.1	EMBL	sequence_feature	433918	434055	.	+	.	ID=id1008;Note=Pfam match to entry PF00370 FGGY%2C FGGY family of carbohydrate kinases%2C score 49.10%2C E-value 1.4e-11;gbkey=misc_feature;inference=protein motif:PF00370
AL590842.1	EMBL	gene	434734	435774	.	+	.	ID=gene414;Name=YPO0416;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0416
AL590842.1	EMBL	CDS	434734	435774	.	+	0	ID=cds406;Parent=gene414;Dbxref=GOA:Q0WJP6,InterPro:IPR002201,InterPro:IPR011916,UniProtKB/TrEMBL:Q0WJP6,NCBI_GP:CAL19097.1;Name=CAL19097.1;Note=Similar to Escherichia coli lipopolysaccharide core biosynthesis protein RfaQ or WaaQ SW:RFAQ_ECOLI (P25742) (344 aa) fasta scores: E(): 2.3e-45%2C 40.356%25 id in 337 aa and to Salmonella typhimurium lipopolysaccharide core biosynthesis protein RfaQ or WaaQ TR:O68270 (EMBL:AF026386) (344 aa) fasta scores: E(): 3.8e-46%2C 41.246%25 id in 337 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF026386;product=putative lipopolysaccharide core biosynthesis protein;protein_id=CAL19097.1;transl_table=11
AL590842.1	EMBL	sequence_feature	434938	435708	.	+	.	ID=id1009;Note=Pfam match to entry PF01075 Heptosyltranf%2CHeptosyltransferase%2C score 116.40%2C E-value 5.3e-31;gbkey=misc_feature;inference=protein motif:PF01075
AL590842.1	EMBL	gene	435822	437054	.	+	.	ID=gene415;Name=YPO0417;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0417
AL590842.1	EMBL	CDS	435822	437054	.	+	0	ID=cds407;Parent=gene415;Dbxref=UniProtKB/TrEMBL:Q7CG50,NCBI_GP:CAL19098.1;Name=CAL19098.1;Note=Shows weak similarity to Salmonella typhimurium O-antigen ligase RfaL SW:RFAL_SALTY (P26471) (404 aa) fasta scores: E(): 0.0056%2C 24.796%25 id in 367 aa. Similar to other putative O-antigen biosynthesis genes e.g. Haemophilus influenzae hypothetical protein HI0874 SW:Y874_HAEIN (P44067) (399 aa) fasta scores: E(): 7.4e-06%2C 25.369%25 id in 406 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative O-antigen biosynthesis protein;protein_id=CAL19098.1;transl_table=11
AL590842.1	EMBL	sequence_feature	435879	435968	.	+	.	ID=id1010;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	435996	436064	.	+	.	ID=id1011;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	436167	436235	.	+	.	ID=id1012;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	436278	436346	.	+	.	ID=id1013;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	436365	436424	.	+	.	ID=id1014;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	436434	436487	.	+	.	ID=id1015;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	436500	436553	.	+	.	ID=id1016;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	436797	436865	.	+	.	ID=id1017;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	436884	436952	.	+	.	ID=id1018;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	436965	437033	.	+	.	ID=id1019;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	437640	437837	.	+	.	ID=gene416;Name=YPO0418;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0418
AL590842.1	EMBL	CDS	437640	437837	.	+	0	ID=cds408;Parent=gene416;Dbxref=UniProtKB/TrEMBL:Q74PX1,NCBI_GP:CAL19099.1;Name=CAL19099.1;Note=Similar to the N-terminal region of Arabidopsis thaliana putative ring zinc finger protein At2g42350 TR:Q9SLC4 (EMBL:AC005956) (217 aa) fasta scores: E(): 5.9%2C28.814%25 id in 59 aa;gbkey=CDS;inference=similar to sequence:INSDC:AC005956;product=putative membrane protein;protein_id=CAL19099.1;transl_table=11
AL590842.1	EMBL	sequence_feature	437700	437768	.	+	.	ID=id1020;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	437864	438097	.	+	.	ID=gene417;Name=YPO0419;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0419
AL590842.1	EMBL	CDS	437864	438097	.	+	0	ID=cds409;Parent=gene417;Dbxref=InterPro:IPR010445,UniProtKB/TrEMBL:Q7CG51,NCBI_GP:CAL19100.1;Name=CAL19100.1;Note=Similar to the C-terminal regions of Malawimonas jakobiformis ABC transporter channel subunit YejV TR:Q9G873 (EMBL:AF295546) (218 aa) fasta scores: E(): 3%2C 32.857%25 id in 70 aa%2C and to Albinaria coerulea NADH-ubiquinone oxidoreductase chain 6 Nd6 SW:NU6M_ALBCO (P48922) (155 aa) fasta scores: E(): 3.3%2C 27.397%25 id in 73 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF295546;product=putative exported protein;protein_id=CAL19100.1;transl_table=11
AL590842.1	EMBL	sequence_feature	437870	437938	.	+	.	ID=id1021;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	437981	438049	.	+	.	ID=id1022;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	438149	439231	.	+	.	ID=gene418;Name=YPO0420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0420
AL590842.1	EMBL	CDS	438149	439231	.	+	0	ID=cds410;Parent=gene418;Dbxref=GOA:Q0WJP2,InterPro:IPR006143,UniProtKB/TrEMBL:Q0WJP2,NCBI_GP:CAL19101.1;Name=CAL19101.1;Note=Similar to Vibrio cholerae putative multidrug resistance protein Vc1675 TR:Q9KRG7 (EMBL:AE004245) (343 aa) fasta scores: E(): 1.2e-22%2C 30.919%25 id in 359 aa%2C and to Pseudomonas aeruginosa probable Rnd efflux membrane fusion protein precursor Pa4374 TR:Q9HW28 (EMBL:AE004853) (376 aa) fasta scores: E(): 2.1e-13%2C 28.086%25 id in 324 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004853;product=putative lipoprotein;protein_id=CAL19101.1;transl_table=11
AL590842.1	EMBL	sequence_feature	438170	438202	.	+	.	ID=id1023;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	439231	442317	.	+	.	ID=gene419;Name=YPO0421;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0421
AL590842.1	EMBL	CDS	439231	442317	.	+	0	ID=cds411;Parent=gene419;Dbxref=GOA:Q7CG52,InterPro:IPR001036,InterPro:IPR027463,UniProtKB/TrEMBL:Q7CG52,NCBI_GP:CAL19102.1;Name=CAL19102.1;Note=Similar to Vibrio cholerae transporter%2C AcrB/D/F family Vc1757 TR:Q9KR85 (EMBL:AE004253) (1016 aa) fasta scores: E(): 4.3e-157%2C 40.766%25 id in 1018 aa%2C and to Xylella fastidiosa cation efflux system protein Xf2083 TR:Q9PBQ7 (EMBL:AE004023) (1020 aa) fasta scores: E(): 2.1e-106%2C 30.731%25 id in 999 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004253;product=putative multi-drug efflux protein;protein_id=CAL19102.1;transl_table=11
AL590842.1	EMBL	sequence_feature	439237	439509	.	+	.	ID=id1024;Note=Pfam match to entry PF00873 ACR_tran%2C AcrB/AcrD/AcrF family%2C score 35.40%2C E-value 6.2e-09;gbkey=misc_feature;inference=protein motif:PF00873
AL590842.1	EMBL	sequence_feature	439267	439326	.	+	.	ID=id1025;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	439582	440457	.	+	.	ID=id1026;Note=Pfam match to entry PF00873 ACR_tran%2C AcrB/AcrD/AcrF family%2C score 132.50%2C E-value 7.8e-36;gbkey=misc_feature;inference=protein motif:PF00873
AL590842.1	EMBL	sequence_feature	440224	440292	.	+	.	ID=id1027;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	440305	440373	.	+	.	ID=id1028;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	440401	440469	.	+	.	ID=id1029;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	440530	440583	.	+	.	ID=id1030;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	440620	440688	.	+	.	ID=id1031;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	440761	441036	.	+	.	ID=id1032;Note=Pfam match to entry PF00873 ACR_tran%2C AcrB/AcrD/AcrF family%2C score 33.30%2C E-value 2.2e-08;gbkey=misc_feature;inference=protein motif:PF00873
AL590842.1	EMBL	sequence_feature	440800	440868	.	+	.	ID=id1033;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	441394	442272	.	+	.	ID=id1034;Note=Pfam match to entry PF00873 ACR_tran%2C AcrB/AcrD/AcrF family%2C score 130.10%2C E-value 4.1e-35;gbkey=misc_feature;inference=protein motif:PF00873
AL590842.1	EMBL	sequence_feature	441820	441879	.	+	.	ID=id1035;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	441898	441966	.	+	.	ID=id1036;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	441976	442044	.	+	.	ID=id1037;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	442105	442164	.	+	.	ID=id1038;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	442192	442260	.	+	.	ID=id1039;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	442678	443010	.	-	.	ID=gene420;Name=YPO0422;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0422
AL590842.1	EMBL	CDS	442678	443010	.	-	0	ID=cds412;Parent=gene420;Dbxref=UniProtKB/TrEMBL:Q74PX5,NCBI_GP:CAL19103.1;Name=CAL19103.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19103.1;transl_table=11
AL590842.1	EMBL	gene	443157	443504	.	-	.	ID=gene421;Name=YPO0423;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0423
AL590842.1	EMBL	CDS	443157	443504	.	-	0	ID=cds413;Parent=gene421;Dbxref=UniProtKB/TrEMBL:Q7CG53,NCBI_GP:CAL19104.1;Name=CAL19104.1;Note=Similar to the C-terminal region of Schizosaccharomyces pombe hypothetical protein C23E6.01 in chromosome II SPBC23E6.01 TR:O60176 (EMBL:AL023287) (240 aa) fasta scores: E(): 4%2C 32.258%25 id in 93 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL023287;product=hypothetical protein;protein_id=CAL19104.1;transl_table=11
AL590842.1	EMBL	gene	443813	444898	.	+	.	ID=gene422;Name=YPO0424;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0424
AL590842.1	EMBL	CDS	443813	444898	.	+	0	ID=cds414;Parent=gene422;Dbxref=GOA:Q7CG54,InterPro:IPR000070,InterPro:IPR011050,InterPro:IPR012334,UniProtKB/TrEMBL:Q7CG54,NCBI_GP:CAL19105.1;Name=CAL19105.1;Note=Similar to Erwinia chrysanthemi pectinesterase A PemA SW:PMEA_ERWCH (P07863) (366 aa) fasta scores: E(): 4.6e-79%2C 55.249%25 id in 362 aa%2C and to Burkholderia solanacearum pectinesterase Pme SW:PME_BURSO (P24791) (396 aa) fasta scores: E(): 9.3e-16%2C 30.321%25 id in 343 aa;gbkey=CDS;product=putative pectinesterase;protein_id=CAL19105.1;transl_table=11
AL590842.1	EMBL	sequence_feature	443828	444883	.	+	.	ID=id1040;Note=Pfam match to entry PF01095 Pectinesterase%2CPectinesterase%2C score 381.80%2C E-value 7.1e-111;gbkey=misc_feature;inference=protein motif:PF01095
AL590842.1	EMBL	gene	445439	446611	.	-	.	ID=gene423;Name=hmsT;gbkey=Gene;gene=hmsT;gene_biotype=protein_coding;locus_tag=YPO0425
AL590842.1	EMBL	CDS	445439	446611	.	-	0	ID=cds415;Parent=gene423;Dbxref=InterPro:IPR000160,InterPro:IPR029787,UniProtKB/TrEMBL:Q9X5X6,NCBI_GP:CAL19106.1;Name=CAL19106.1;Note=Identical to the previously sequenced Yersinia pestis HmsT protein TR:Q9X5X6 (EMBL:AF129277) (390 aa) fasta scores: E(): 4.6e-148%2C 100.000%25 id in 390 aa. HmsT has been shown to be essential for the expression of the hemin storage (Hms+) phenotype;gbkey=CDS;gene=hmsT;inference=similar to sequence:INSDC:AF129277;product=HmsT protein;protein_id=CAL19106.1;transl_table=11
AL590842.1	EMBL	sequence_feature	445487	445975	.	-	.	ID=id1041;Note=Pfam match to entry PF00990 DUF9%2C Domain of unknown function DUF9%2C score 199.90%2C E-value 3.8e-56;gbkey=misc_feature;gene=hmsT;inference=protein motif:PF00990
AL590842.1	EMBL	sequence_feature	446027	446092	.	-	.	ID=id1042;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=hmsT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	446144	446209	.	-	.	ID=id1043;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=hmsT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	446255	446305	.	-	.	ID=id1044;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=hmsT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	446402	446467	.	-	.	ID=id1045;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=hmsT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	446483	446548	.	-	.	ID=id1046;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=hmsT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	446953	447192	.	+	.	ID=gene424;Name=YPO0426;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0426
AL590842.1	EMBL	CDS	446953	447192	.	+	0	ID=cds416;Parent=gene424;Dbxref=InterPro:IPR009885,UniProtKB/TrEMBL:Q0WJN6,NCBI_GP:CAL19107.1;Name=CAL19107.1;Note=Similar to Escherichia coli hypothetical 8.7 kDa protein in fhuF-leuV intergenic region YjjZ or B4367.1 SW:YJJZ_ECOLI (P55914) (78 aa) fasta scores: E(): 1.5e-11%2C49.333%25 id in 75 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL19107.1;transl_table=11
AL590842.1	EMBL	sequence_feature	446974	447027	.	+	.	ID=id1047;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	447046	447102	.	+	.	ID=id1048;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	447115	447183	.	+	.	ID=id1049;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	tRNA	447362	447448	.	-	.	ID=rna9;Note=tRNA Leu anticodon CAG%2C Cove score 64.60;gbkey=tRNA;product=tRNA-Leu
AL590842.1	EMBL	exon	447362	447448	.	-	.	ID=id1050;Parent=rna9;Note=tRNA Leu anticodon CAG%2C Cove score 64.60;gbkey=tRNA;product=tRNA-Leu
AL590842.1	EMBL	gene	447705	448748	.	-	.	ID=gene425;Name=b4371;gbkey=Gene;gene=b4371;gene_biotype=protein_coding;gene_synonym=rsmC;locus_tag=YPO0427
AL590842.1	EMBL	CDS	447705	448748	.	-	0	ID=cds417;Parent=gene425;Dbxref=GOA:Q7CG56,InterPro:IPR002052,InterPro:IPR007848,InterPro:IPR013675,InterPro:IPR023543,InterPro:IPR029063,NCBI_GP:CAL19108.1;Name=CAL19108.1;Note=Similar to Escherichia coli ribosomal RNA small subunit methyltransferase C RsmC SW:RSMC_ECOLI (P39406) (342 aa) fasta scores: E(): 0%2C 69.1%25 id in 340 aa%2C and to Haemophilus influenzae ribosomal RNA small subunit methyltransferase C RsmC SW:RSMC_HAEIN (P44453) (330 aa) fasta scores: E(): 0%2C 45.5%25 id in 330 aa;gbkey=CDS;gene=b4371;product=ribosomal RNA small subunit methyltransferase C;protein_id=CAL19108.1;transl_table=11
AL590842.1	EMBL	sequence_feature	447936	447956	.	-	.	ID=id1051;Note=PS00092 N-6 Adenine-specific DNA methylases signature.;gbkey=misc_feature;gene=b4371;inference=protein motif:ProSite:PS00092
AL590842.1	EMBL	gene	448861	449298	.	+	.	ID=gene426;Name=b4372;gbkey=Gene;gene=b4372;gene_biotype=protein_coding;gene_synonym=holD;locus_tag=YPO0428
AL590842.1	EMBL	CDS	448861	449298	.	+	0	ID=cds418;Parent=gene426;Dbxref=GOA:Q7CG57,InterPro:IPR004615,UniProtKB/TrEMBL:Q7CG57,NCBI_GP:CAL19109.1;Name=CAL19109.1;Note=Similar to Escherichia coli DNA polymerase III%2C psi subunit HolD SW:HOLD_ECOLI (P28632) (137 aa) fasta scores: E(): 2.1e-30%2C 59.701%25 id in 134 aa%2C and to Haemophilus influenzae DNA polymerase III%2C psi subunit HolD or Hi0011 SW:HOLD_HAEIN (P43750) (134 aa) fasta scores: E(): 1.5e-10%2C38.168%25 id in 131 aa;gbkey=CDS;gene=b4372;product=DNA polymerase III%2C psi subunit;protein_id=CAL19109.1;transl_table=11
AL590842.1	EMBL	gene	449243	449686	.	+	.	ID=gene427;Name=b4373;gbkey=Gene;gene=b4373;gene_biotype=protein_coding;gene_synonym=rimI;locus_tag=YPO0429
AL590842.1	EMBL	CDS	449243	449686	.	+	0	ID=cds419;Parent=gene427;Dbxref=GOA:Q0WJN3,InterPro:IPR000182,InterPro:IPR006464,InterPro:IPR016181,UniProtKB/TrEMBL:Q0WJN3,NCBI_GP:CAL19110.1;Name=CAL19110.1;Note=Similar to Escherichia coli ribosomal-protein-alanine acetyltransferase RimI or B4373 SW:RIMI_ECOLI (P09453) (148 aa) fasta scores: E(): 7.7e-44%2C72.109%25 id in 147 aa%2C and to Haemophilus influenzae ribosomal-protein-alanine acetyltransferase RimI or Hi0010 SW:RIMI_HAEIN (P44305) (146 aa) fasta scores: E(): 8.1e-28%2C54.861%25 id in 144 aa. Note the large overlap with the upstream CDS.;gbkey=CDS;gene=b4373;product=ribosomal-protein-alanine acetyltransferase;protein_id=CAL19110.1;transl_table=11
AL590842.1	EMBL	sequence_feature	449381	449605	.	+	.	ID=id1052;Note=Pfam match to entry PF00583 Acetyltransf%2CAcetyltransferase (GNAT) family%2C score 78.30%2C E-value 1.6e-19;gbkey=misc_feature;gene=b4373;inference=protein motif:PF00583
AL590842.1	EMBL	gene	449865	451454	.	+	.	ID=gene428;Name=b4375;gbkey=Gene;gene=b4375;gene_biotype=protein_coding;gene_synonym=miaD,prfC,tos;locus_tag=YPO0430
AL590842.1	EMBL	CDS	449865	451454	.	+	0	ID=cds420;Parent=gene428;Dbxref=GOA:Q8ZIR0,InterPro:IPR000795,InterPro:IPR004161,InterPro:IPR004548,InterPro:IPR005225,InterPro:IPR009000,InterPro:IPR009022,InterPro:IPR027417,NCBI_GP:CAL19111.1;Name=CAL19111.1;Note=Similar to Escherichia coli peptide chain release factor 3 PrfC SW:RF3_ECOLI (P33998) (528 aa) fasta scores: E(): 0%2C 89.4%25 id in 526 aa%2C and to Salmonella typhimurium peptide chain release factor 3 PrfC SW:RF3_SALTY (Q56121) (528 aa) fasta scores: E(): 0%2C 90.1%25 id in 526 aa;gbkey=CDS;gene=b4375;product=peptide chain release factor 3;protein_id=CAL19111.1;transl_table=11
AL590842.1	EMBL	sequence_feature	449895	451283	.	+	.	ID=id1053;Note=Pfam match to entry PF00009 GTP_EFTU%2C Elongation factor Tu family%2C score 263.10%2C E-value 2.7e-77;gbkey=misc_feature;gene=b4375;inference=protein motif:PF00009
AL590842.1	EMBL	sequence_feature	450036	450083	.	+	.	ID=id1054;Note=PS00301 GTP-binding elongation factors signature.;gbkey=misc_feature;gene=b4375;inference=protein motif:ProSite:PS00301
AL590842.1	EMBL	gene	451781	452395	.	+	.	ID=gene429;Name=b4376;gbkey=Gene;gene=b4376;gene_biotype=protein_coding;gene_synonym=osmY;locus_tag=YPO0431
AL590842.1	EMBL	CDS	451781	452395	.	+	0	ID=cds421;Parent=gene429;Dbxref=InterPro:IPR007055,InterPro:IPR014004,UniProtKB/TrEMBL:Q7CG58,NCBI_GP:CAL19112.1;Name=CAL19112.1;Note=Similar to Escherichia coli osmotically inducible protein Y OsmY SW:OSMY_ECOLI (P27291) (201 aa) fasta scores: E(): 0%2C 64.0%25 id in 203 aa;gbkey=CDS;gene=b4376;product=osmotically inducible protein Y;protein_id=CAL19112.1;transl_table=11
AL590842.1	EMBL	gene	452562	452723	.	+	.	ID=gene430;Name=YPO0432;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0432
AL590842.1	EMBL	CDS	452562	452723	.	+	0	ID=cds422;Parent=gene430;Dbxref=GOA:Q7CG59,InterPro:IPR009760,NCBI_GP:CAL19113.1;Name=CAL19113.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein Pa5482 TR:AAG08867 (EMBL:AE004961) (53 aa) fasta scores: E(): 1.6e-08%2C 55.8%25 id in 52 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004961;product=putative exported protein;protein_id=CAL19113.1;transl_table=11
AL590842.1	EMBL	sequence_feature	452574	452630	.	+	.	ID=id1055;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	452640	452708	.	+	.	ID=id1056;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	452797	454068	.	+	.	ID=gene431;Name=YPO0433;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0433
AL590842.1	EMBL	CDS	452797	454068	.	+	0	ID=cds423;Parent=gene431;Dbxref=GOA:Q7CG60,InterPro:IPR002641,InterPro:IPR016035,UniProtKB/TrEMBL:Q7CG60,NCBI_GP:CAL19114.1;Name=CAL19114.1;Note=Similar to Escherichia coli hypothetical protein YjjU SW:YJJU_ECOLI (P39407) (357 aa) fasta scores: E(): 0%2C63.5%25 id in 348 aa%2C and to Vibrio cholerae hypothetical protein VC2009 TR:Q9KQI9 (EMBL:AE004275) (389 aa) fasta scores: E(): 7.2e-26%2C 33.3%25 id in 363 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004275;product=conserved hypothetical protein;protein_id=CAL19114.1;transl_table=11
AL590842.1	EMBL	gene	454105	454893	.	+	.	ID=gene432;Name=YPO0434;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0434
AL590842.1	EMBL	CDS	454105	454893	.	+	0	ID=cds424;Parent=gene432;Dbxref=GOA:Q0WJM8,InterPro:IPR001130,InterPro:IPR018228,UniProtKB/TrEMBL:Q0WJM8,NCBI_GP:CAL19115.1;Name=CAL19115.1;Note=Similar to Escherichia coli putative deoxyribonuclease YjjV SW:YJJV_ECOLI (P39408) (259 aa) fasta scores: E(): 6.7e-67%2C 64.314%25 id in 255 aa%2C and to Pasteurella multocida hypothetical protein PM0942 TR:Q9CM93 (EMBL:AE006134) (263 aa) fasta scores: E(): 7.7e-42%2C48.302%25 id in 265 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE006134;product=putative metalloenzyme;protein_id=CAL19115.1;transl_table=11
AL590842.1	EMBL	sequence_feature	454114	454140	.	+	.	ID=id1057;Note=PS01137 Uncharacterized protein family UPF0006 signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS01137
AL590842.1	EMBL	sequence_feature	454129	454872	.	+	.	ID=id1058;Note=Pfam match to entry PF01026 UPF0006%2C Metalloenzyme of unknown function UPF0006%2C score 295.70%2C E-value 5.5e-85;gbkey=misc_feature;inference=protein motif:PF01026
AL590842.1	EMBL	sequence_feature	455422	456690	.	+	.	ID=id1059;Note=Pfam match to entry PF01773 Nucleoside_tra2%2C Na+ dependent nucleoside transporter%2C score 792.80%2C E-value 1.3e-234;gbkey=misc_feature;inference=protein motif:PF01773
AL590842.1	EMBL	gene	455428	456699	.	+	.	ID=gene433;Name=YPO0435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0435
AL590842.1	EMBL	CDS	455428	456699	.	+	0	ID=cds425;Parent=gene433;Dbxref=GOA:Q0WJM7,InterPro:IPR002668,InterPro:IPR008276,InterPro:IPR011642,InterPro:IPR011657,InterPro:IPR018270,UniProtKB/TrEMBL:Q0WJM7,NCBI_GP:CAL19116.1;Name=CAL19116.1;Note=Similar to Vibrio cholerae NupC family protein Vc2352 TR:Q9KPL5 (EMBL:AE004305) (418 aa) fasta scores: E(): 2.1e-119%2C 72.340%25 id in 423 aa%2C and to Helicobacter pylori J99 putative nucleoside transporter Jhp1106 TR:Q9ZK36 (EMBL:AE001538) (418 aa) fasta scores: E(): 2.7e-74%2C 57.346%25 id in 422 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004305;product=putative Na+ dependent nucleoside transporter-family protein;protein_id=CAL19116.1;transl_table=11
AL590842.1	EMBL	sequence_feature	455428	455487	.	+	.	ID=id1060;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	455500	455568	.	+	.	ID=id1061;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	455605	455664	.	+	.	ID=id1062;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	455707	455775	.	+	.	ID=id1063;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	455938	456006	.	+	.	ID=id1064;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	456220	456288	.	+	.	ID=id1065;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	456301	456369	.	+	.	ID=id1066;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	456514	456582	.	+	.	ID=id1067;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	456619	456687	.	+	.	ID=id1068;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	457275	458072	.	+	.	ID=gene434;Name=deoC;gbkey=Gene;gene=deoC;gene_biotype=protein_coding;gene_synonym=dra,thyR;locus_tag=YPO0436
AL590842.1	EMBL	CDS	457275	458072	.	+	0	ID=cds426;Parent=gene434;Dbxref=GOA:Q8ZIQ4,InterPro:IPR002915,InterPro:IPR011343,InterPro:IPR013785,InterPro:IPR023649,NCBI_GP:CAL19117.1;Name=CAL19117.1;Note=Similar to Escherichia coli deoxyribose-phosphate aldolase DeoC B4381 SW:DEOC_ECOLI (P00882) (259 aa) fasta scores: E(): 6e-84%2C 78.491%25 id in 265 aa%2C and to Vibrio cholerae deoxyribose-phosphate aldolase Vc2350 TR:Q9KPL7 (EMBL:AE004305) (259 aa) fasta scores: E(): 8.3e-76%2C75.934%25 id in 241 aa;gbkey=CDS;gene=deoC;inference=similar to sequence:INSDC:AE004305;product=deoxyribose-phosphate aldolase;protein_id=CAL19117.1;transl_table=11
AL590842.1	EMBL	sequence_feature	457317	457991	.	+	.	ID=id1069;Note=Pfam match to entry PF01791 DeoC%2CDeoxyribose-phosphate aldolase%2C score 300.70%2C E-value 1.7e-86;gbkey=misc_feature;gene=deoC;inference=protein motif:PF01791
AL590842.1	EMBL	pseudogene	458193	459511	.	+	.	ID=gene435;Name=deoA;gbkey=Gene;gene=deoA;gene_biotype=pseudogene;gene_synonym=tpp,ttg;locus_tag=YPO0437;pseudo=true
AL590842.1	EMBL	CDS	458193	459511	.	+	0	ID=cds427;Parent=gene435;Note=Similar to Escherichia coli thymidine phosphorylase DeoA SW:TYPH_ECOLI (P07650) (440 aa) fasta scores: E(): 1.3e-147%2C 82.955%25 id in 440 aa%2C and to Bacillus halodurans pyrimidine-nucleoside phosphorylase Pdp TR:Q9KCN6 (EMBL:AP001512) (433 aa) fasta scores: E(): 1.5e-61%2C41.570%25 id in 433 aa. There is a frameshift around codon 146. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=deoA;inference=similar to sequence:INSDC:AP001512;product=thymidine phosphorylase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	458208	458639	.	+	.	ID=id1070;Note=Pfam match to entry PF00591 Glycos_transf_3%2Cglycosyl transferase family%2C score 185.00%2C E-value 1.2e-51;gbkey=misc_feature;gene=deoA;inference=protein motif:PF00591
AL590842.1	EMBL	sequence_feature	458529	458576	.	+	.	ID=id1071;Note=PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature.;gbkey=misc_feature;gene=deoA;inference=protein motif:ProSite:PS00647
AL590842.1	EMBL	gene	459643	460866	.	+	.	ID=gene436;Name=b4383;gbkey=Gene;gene=b4383;gene_biotype=protein_coding;gene_synonym=deoB,drm,thyR;locus_tag=YPO0439
AL590842.1	EMBL	CDS	459643	460866	.	+	0	ID=cds428;Parent=gene436;Dbxref=GOA:Q8ZIQ3,InterPro:IPR006124,InterPro:IPR010045,InterPro:IPR017849,InterPro:IPR017850,InterPro:IPR024052,NCBI_GP:CAL19119.1;Name=CAL19119.1;Note=Similar to Escherichia coli phosphopentomutase DeoB SW:DEOB_ECOLI (P07651) (407 aa) fasta scores: E(): 0%2C 86.0%25 id in 407 aa%2C and to Vibrio cholerae phosphopentomutase Vc2348 TR:Q9KPL9 (EMBL:AE004305) (406 aa) fasta scores: E(): 0%2C 77.0%25 id in 408 aa;gbkey=CDS;gene=b4383;inference=similar to sequence:INSDC:AE004305;product=phosphopentomutase;protein_id=CAL19119.1;transl_table=11
AL590842.1	EMBL	sequence_feature	460468	460797	.	+	.	ID=id1072;Note=Pfam match to entry PF01676 Metalloenzyme%2CMetalloenzyme superfamily%2C score 163.70%2C E-value 3.1e-45;gbkey=misc_feature;gene=b4383;inference=protein motif:PF01676
AL590842.1	EMBL	gene	460991	461710	.	+	.	ID=gene437;Name=b4384;gbkey=Gene;gene=b4384;gene_biotype=protein_coding;gene_synonym=deoD,pup;locus_tag=YPO0440
AL590842.1	EMBL	CDS	460991	461710	.	+	0	ID=cds429;Parent=gene437;Dbxref=GOA:Q8ZIQ2,InterPro:IPR000845,InterPro:IPR004402,InterPro:IPR018016,InterPro:IPR018017,NCBI_GP:CAL19120.1;Name=CAL19120.1;Note=Similar to Escherichia coli purine nucleoside phosphorylase DeoD SW:DEOD_ECOLI (P09743) (238 aa) fasta scores: E(): 0%2C 91.1%25 id in 236 aa%2C and to Klebsiella pneumoniae purine nucleoside phosphorylase DeoD SW:DEOD_KLEPN (Q59482) (239 aa) fasta scores: E(): 0%2C 88.7%25 id in 238 aa;gbkey=CDS;gene=b4384;product=purine nucleoside phosphorylase;protein_id=CAL19120.1;transl_table=11
AL590842.1	EMBL	sequence_feature	461033	461689	.	+	.	ID=id1073;Note=Pfam match to entry PF01048 PNP_UDP_1%2C Phosphorylase family%2C score 377.80%2C E-value 1.1e-109;gbkey=misc_feature;gene=b4384;inference=protein motif:PF01048
AL590842.1	EMBL	sequence_feature	461174	461221	.	+	.	ID=id1074;Note=PS01232 Purine and other phosphorylases family 1 signature.;gbkey=misc_feature;gene=b4384;inference=protein motif:ProSite:PS01232
AL590842.1	EMBL	gene	461822	462523	.	-	.	ID=gene438;Name=smp;gbkey=Gene;gene=smp;gene_biotype=protein_coding;locus_tag=YPO0441
AL590842.1	EMBL	CDS	461822	462523	.	-	0	ID=cds430;Parent=gene438;Dbxref=GOA:Q8ZIQ1,InterPro:IPR019305,NCBI_GP:CAL19121.1;Name=CAL19121.1;Note=Similar to Escherichia coli hypothetical protein Smp SW:SMP_ECOLI (P18838) (214 aa) fasta scores: E(): 0%2C 65.7%25 id in 213 aa;gbkey=CDS;gene=smp;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL19121.1;transl_table=11
AL590842.1	EMBL	sequence_feature	461966	462031	.	-	.	ID=id1075;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=smp;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	462419	462484	.	-	.	ID=id1076;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=smp;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	462755	463735	.	+	.	ID=gene439;Name=b4388;gbkey=Gene;gene=b4388;gene_biotype=protein_coding;gene_synonym=serB;locus_tag=YPO0442
AL590842.1	EMBL	CDS	462755	463735	.	+	0	ID=cds431;Parent=gene439;Dbxref=GOA:Q7CG61,InterPro:IPR004469,InterPro:IPR006383,InterPro:IPR023190,InterPro:IPR023214,UniProtKB/TrEMBL:Q7CG61,NCBI_GP:CAL19122.1;Name=CAL19122.1;Note=Similar to Escherichia coli phosphoserine phosphatase SerB SW:SERB_ECOLI (P06862) (322 aa) fasta scores: E(): 0%2C 75.0%25 id in 320 aa%2C and to Haemophilus influenzae phosphoserine phosphatase SerB SW:SERB_HAEIN (P44997) (314 aa) fasta scores: E(): 0%2C 51.0%25 id in 304 aa;gbkey=CDS;gene=b4388;product=phosphoserine phosphatase;protein_id=CAL19122.1;transl_table=11
AL590842.1	EMBL	gene	463823	465205	.	+	.	ID=gene440;Name=b4389;gbkey=Gene;gene=b4389;gene_biotype=protein_coding;gene_synonym=radA,sms;locus_tag=YPO0443
AL590842.1	EMBL	CDS	463823	465205	.	+	0	ID=cds432;Parent=gene440;Dbxref=GOA:Q7CG62,InterPro:IPR003593,InterPro:IPR004504,InterPro:IPR014721,InterPro:IPR020568,InterPro:IPR020588,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CG62,NCBI_GP:CAL19123.1;Name=CAL19123.1;Note=Similar to Escherichia coli DNA repair protein RadA SW:RADA_ECOLI (P24554) (460 aa) fasta scores: E(): 0%2C 91.1%25 id in 460 aa%2C and to Haemophilus influenzae DNA repair protein RadA SW:RADA_HAEIN (P45266) (458 aa) fasta scores: E(): 0%2C 79.6%25 id in 460 aa;gbkey=CDS;gene=b4389;product=DNA repair protein RadA;protein_id=CAL19123.1;transl_table=11
AL590842.1	EMBL	sequence_feature	464126	464149	.	+	.	ID=id1077;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=b4389;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	465364	466635	.	+	.	ID=gene441;Name=b4390;gbkey=Gene;gene=b4390;gene_biotype=protein_coding;gene_synonym=nadI,nadR,pnuA;locus_tag=YPO0444
AL590842.1	EMBL	CDS	465364	466635	.	+	0	ID=cds433;Parent=gene441;Dbxref=GOA:Q74PZ2,InterPro:IPR001387,InterPro:IPR004821,InterPro:IPR006417,InterPro:IPR010982,InterPro:IPR014729,InterPro:IPR016429,InterPro:IPR027417,UniProtKB/TrEMBL:Q74PZ2,NCBI_GP:CAL19124.1;Name=CAL19124.1;Note=Similar to Salmonella typhimurium transcriptional regulator NadR SW:NADR_SALTY (P24518) (409 aa) fasta scores: E(): 0%2C 85.0%25 id in 406 aa%2C and to Escherichia coli transcriptional regulator NadR SW:NADR_ECOLI (P27278) (410 aa) fasta scores: E(): 0%2C 83.7%25 id in 406 aa;gbkey=CDS;gene=b4390;product=transcriptional regulator NadR;protein_id=CAL19124.1;transl_table=11
AL590842.1	EMBL	sequence_feature	465382	465549	.	+	.	ID=id1078;Note=Pfam match to entry PF01381 HTH_3%2C Helix-turn-helix%2Cscore 41.70%2C E-value 1.7e-08;gbkey=misc_feature;gene=b4390;inference=protein motif:PF01381
AL590842.1	EMBL	sequence_feature	465409	465474	.	+	.	ID=id1079;Note=Predicted helix-turn-helix motif with score 1872 (+5.56 SD) at aa 16-37%2C sequence CTLQQVAEASGMTKGYLSQLLN;gbkey=misc_feature;gene=b4390
AL590842.1	EMBL	sequence_feature	466075	466098	.	+	.	ID=id1080;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=b4390;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	466078	466101	.	+	.	ID=id1081;Note=PS00687 Aldehyde dehydrogenases glutamic acid active site.;gbkey=misc_feature;gene=b4390;inference=protein motif:ProSite:PS00687
AL590842.1	EMBL	gene	466792	467922	.	+	.	ID=gene442;Name=YPO0445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0445
AL590842.1	EMBL	CDS	466792	467922	.	+	0	ID=cds434;Parent=gene442;Dbxref=InterPro:IPR003812,InterPro:IPR011991,InterPro:IPR025230,UniProtKB/TrEMBL:Q0WJL9,NCBI_GP:CAL19125.1;Name=CAL19125.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA0574 TR:AAG03963 (EMBL:AE004493) (373 aa) fasta scores: E(): 0%2C 57.0%25 id in 372 aa%2C and to Sphingomonas aromaticivorans hypothetical protein TR:O85863 (EMBL:AF079317) (379 aa) fasta scores: E(): 0%2C 37.0%25 id in 373 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF079317;product=conserved hypothetical protein;protein_id=CAL19125.1;transl_table=11
AL590842.1	EMBL	pseudogene	468068	469731	.	-	.	ID=gene443;Name=b4391;gbkey=Gene;gene=b4391;gene_biotype=pseudogene;gene_synonym=yjjK;locus_tag=YPO0446;pseudo=true
AL590842.1	EMBL	CDS	468068	469731	.	-	0	ID=cds435;Parent=gene443;Note=Similar to Escherichia coli ABC transporter ATP-binding protein YjjK SW:YJJK_ECOLI (P37797) (554 aa) fasta scores: E(): 1.9e-188%2C 89.892%25 id in 554 aa%2C and to Haemophilus influenzae ABC transporter ATP-binding protein Hi1252 SW:YJJK_HAEIN (P45127) (556 aa) fasta scores: E(): 6e-183%2C 85.921%25 id in 554 aa. There is a frameshift around codon 190. The sequence has been checked and is believed to be correct.;gbkey=CDS;gene=b4391;product=ABC transporter ATP-binding protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	468185	468691	.	-	.	ID=id1082;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 168.60%2C E-value 1e-46;gbkey=misc_feature;gene=b4391;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	468647	468670	.	-	.	ID=id1083;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=b4391;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	469108	469638	.	-	.	ID=id1084;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 58.60%2C E-value 1.4e-13;gbkey=misc_feature;gene=b4391;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	469201	469245	.	-	.	ID=id1085;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=b4391;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	469594	469617	.	-	.	ID=id1086;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=b4391;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	469914	470420	.	-	.	ID=gene444;Name=YPO0448;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0448
AL590842.1	EMBL	CDS	469914	470420	.	-	0	ID=cds436;Parent=gene444;Dbxref=GOA:Q7CG64,InterPro:IPR006664,InterPro:IPR006665,UniProtKB/TrEMBL:Q7CG64,NCBI_GP:CAL19127.1;Name=CAL19127.1;Note=Similar to Escherichia coli putative lipoprotein YfiB SW:YFIB_ECOLI (P07021) (160 aa) fasta scores: E(): 2.9e-22%2C 46.1%25 id in 154 aa%2C and to Pseudomonas aeruginosa probable outer membrane lipoprotein Pa1119 TR:AAG04508 (EMBL:AE004542) (168 aa) fasta scores: E(): 4.9e-26%2C 49.4%25 id in 168 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004542;product=putative lipoprotein;protein_id=CAL19127.1;transl_table=11
AL590842.1	EMBL	sequence_feature	469944	470231	.	-	.	ID=id1087;Note=Pfam match to entry PF00691 OmpA%2C OmpA family%2C score 102.60%2C E-value 7.8e-27;gbkey=misc_feature;inference=protein motif:PF00691
AL590842.1	EMBL	sequence_feature	470337	470369	.	-	.	ID=id1088;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	470426	471703	.	-	.	ID=gene445;Name=YPO0449;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0449
AL590842.1	EMBL	CDS	470426	471703	.	-	0	ID=cds437;Parent=gene445;Dbxref=GOA:Q7CG65,InterPro:IPR000160,InterPro:IPR003660,InterPro:IPR029787,UniProtKB/TrEMBL:Q7CG65,NCBI_GP:CAL19128.1;Name=CAL19128.1;Note=Similar to Escherichia coli hypothetical 46.0 kDa protein in aroF-rplS intergenic region YfiN SW:YFIN_ECOLI (P46139) (408 aa) fasta scores: E(): 3.1e-52%2C 36.524%25 id in 397 aa%2C and to Pseudomonas aeruginosa hypothetical protein Pa1120 TR:Q9I4L5 (EMBL:AE004542) (435 aa) fasta scores: E(): 2.6e-86%2C 55.639%25 id in 399 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004542;product=putative exported protein;protein_id=CAL19128.1;transl_table=11
AL590842.1	EMBL	sequence_feature	470480	470974	.	-	.	ID=id1089;Note=Pfam match to entry PF00990 DUF9%2C Domain of unknown function DUF9%2C score 216.30%2C E-value 4.5e-61;gbkey=misc_feature;inference=protein motif:PF00990
AL590842.1	EMBL	sequence_feature	470999	471211	.	-	.	ID=id1090;Note=Pfam match to entry PF00672 DUF5%2C HAMP domain%2C score 33.00%2C E-value 7e-06;gbkey=misc_feature;inference=protein motif:PF00672
AL590842.1	EMBL	sequence_feature	471167	471232	.	-	.	ID=id1091;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	471563	471628	.	-	.	ID=id1092;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	471596	471628	.	-	.	ID=id1093;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	471724	472347	.	-	.	ID=gene446;Name=YPO0450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0450
AL590842.1	EMBL	CDS	471724	472347	.	-	0	ID=cds438;Parent=gene446;Dbxref=InterPro:IPR025293,UniProtKB/TrEMBL:Q7CG66,NCBI_GP:CAL19129.1;Name=CAL19129.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein Pa1121 TR:AAG04510 (EMBL:AE004542) (190 aa) fasta scores: E(): 2e-25%2C 43.2%25 id in 148 aa%2C and to Escherichia coli hypothetical 19.0 kDa protein in aroF-rplS intergenic region precursor YfiR SW:YFIR_ECOLI (P76597) (172 aa) fasta scores: E(): 4.8e-16%2C 36.0%25 id in 178 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004542;product=putative membrane protein;protein_id=CAL19129.1;transl_table=11
AL590842.1	EMBL	sequence_feature	472198	472263	.	-	.	ID=id1094;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	472722	475448	.	-	.	ID=gene447;Name=YPO0451;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0451
AL590842.1	EMBL	CDS	472722	475448	.	-	0	ID=cds439;Parent=gene447;Dbxref=GOA:Q7CG67,InterPro:IPR001757,InterPro:IPR004014,InterPro:IPR006068,InterPro:IPR008250,InterPro:IPR018303,InterPro:IPR023214,InterPro:IPR023298,InterPro:IPR023299,UniProtKB/TrEMBL:Q7CG67,NCBI_GP:CAL19130.1;Name=CAL19130.1;Note=Similar to Pseudomonas aeruginosa probable cation-transporting P-type ATPase Pa1429 TR:AAG04818 (EMBL:AE004572) (902 aa) fasta scores: E(): 0%2C 44.4%25 id in 899 aa%2C and to Synechocystis sp cation-transporting ATPase Pma1 SW:ATA1_SYNY3 (P37367) (905 aa) fasta scores: E(): 0%2C41.5%25 id in 867 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004572;product=putative cation-transporting P-type ATPase;protein_id=CAL19130.1;transl_table=11
AL590842.1	EMBL	sequence_feature	472734	473171	.	-	.	ID=id1095;Note=Pfam match to entry PF00689 Na_K_ATPase_C%2C Na+/K+ ATPase C-terminus%2C score -51.30%2C E-value 0.00049;gbkey=misc_feature;inference=protein motif:PF00689
AL590842.1	EMBL	sequence_feature	472770	472826	.	-	.	ID=id1096;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	472872	472937	.	-	.	ID=id1097;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	472977	473033	.	-	.	ID=id1098;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	473064	473129	.	-	.	ID=id1099;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	473199	473264	.	-	.	ID=id1100;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	473277	473342	.	-	.	ID=id1101;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	474408	474428	.	-	.	ID=id1102;Note=PS00154 E1-E2 ATPases phosphorylation site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00154
AL590842.1	EMBL	sequence_feature	474456	475160	.	-	.	ID=id1103;Note=Pfam match to entry PF00122 E1-E2_ATPase%2C E1-E2 ATPase%2C score 292.20%2C E-value 1.4e-87;gbkey=misc_feature;inference=protein motif:PF00122
AL590842.1	EMBL	sequence_feature	474522	474587	.	-	.	ID=id1104;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	474618	474683	.	-	.	ID=id1105;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	475116	475181	.	-	.	ID=id1106;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	475194	475259	.	-	.	ID=id1107;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	475245	475388	.	-	.	ID=id1108;Note=Pfam match to entry PF00690 Na_K_ATPase_N%2C Na+/K+ ATPase C-terminus%2C score 24.20%2C E-value 5.9e-06;gbkey=misc_feature;inference=protein motif:PF00690
AL590842.1	EMBL	gene	476018	477937	.	+	.	ID=gene448;Name=slt;gbkey=Gene;gene=slt;gene_biotype=protein_coding;gene_synonym=sltY;locus_tag=YPO0452
AL590842.1	EMBL	CDS	476018	477937	.	+	0	ID=cds440;Parent=gene448;Dbxref=GOA:Q0WJL4,InterPro:IPR000189,InterPro:IPR008258,InterPro:IPR008939,InterPro:IPR012289,InterPro:IPR016026,InterPro:IPR023346,UniProtKB/TrEMBL:Q0WJL4,NCBI_GP:CAL19131.1;Name=CAL19131.1;Note=Similar to Escherichia coli soluble lytic murein transglycosylase precursor Slt SW:SLT_ECOLI (P03810) (645 aa) fasta scores: E(): 0%2C 63.7%25 id in 637 aa%2C and to Vibrio cholerae soluble lytic murein transglycosylase VC0700 TR:Q9KU29 (EMBL:AE004156) (648 aa) fasta scores: E(): 0%2C35.1%25 id in 639 aa;gbkey=CDS;gene=slt;inference=similar to sequence:INSDC:AE004156;product=putative soluble lytic murein transglycosylase;protein_id=CAL19131.1;transl_table=11
AL590842.1	EMBL	sequence_feature	477443	477805	.	+	.	ID=id1109;Note=Pfam match to entry PF01464 SLT%2C Transglycosylase SLT domain%2C score 140.70%2C E-value 2.5e-38;gbkey=misc_feature;gene=slt;inference=protein motif:PF01464
AL590842.1	EMBL	sequence_feature	477500	477586	.	+	.	ID=id1110;Note=PS00922 Prokaryotic transglycosylases signature.;gbkey=misc_feature;gene=slt;inference=protein motif:ProSite:PS00922
AL590842.1	EMBL	sequence_feature	477764	477799	.	+	.	ID=id1111;Note=PS01258 Apoptosis regulator%2C Bcl-2 family BH2 domain signature.;gbkey=misc_feature;gene=slt;inference=protein motif:ProSite:PS01258
AL590842.1	EMBL	gene	478188	478565	.	+	.	ID=gene449;Name=rtrY;gbkey=Gene;gene=rtrY;gene_biotype=protein_coding;gene_synonym=trpR;locus_tag=YPO0453
AL590842.1	EMBL	CDS	478188	478565	.	+	0	ID=cds441;Parent=gene449;Dbxref=GOA:P58700,InterPro:IPR000831,InterPro:IPR010921,InterPro:IPR013335,NCBI_GP:CAL19132.1;Name=CAL19132.1;Note=Similar to Escherichia coli trp operon repressor TrpR SW:TRPR_ECOLI (P03032) (107 aa) fasta scores: E(): 3.9e-26%2C 70.2%25 id in 104 aa%2C and to Enterobacter aerogenes trp operon repressor TrpR SW:TRPR_ENTAE (P39439) (108 aa) fasta scores: E(): 4.9e-28%2C 70.9%25 id in 110 aa;gbkey=CDS;gene=rtrY;product=putative Trp operon repressor;protein_id=CAL19132.1;transl_table=11
AL590842.1	EMBL	sequence_feature	478284	478547	.	+	.	ID=id1112;Note=Pfam match to entry PF01371 Trp_repressor%2C Trp repressor protein%2C score 186.30%2C E-value 4.8e-52;gbkey=misc_feature;gene=rtrY;inference=protein motif:PF01371
AL590842.1	EMBL	gene	478562	479104	.	-	.	ID=gene450;Name=YPO0454;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0454
AL590842.1	EMBL	CDS	478562	479104	.	-	0	ID=cds442;Parent=gene450;Dbxref=GOA:Q8ZIP1,InterPro:IPR002786,InterPro:IPR026533,InterPro:IPR029001,NCBI_GP:CAL19133.1;Name=CAL19133.1;Note=Similar to Escherichia coli hypothetical protein YjjX SW:YJJX_ECOLI (P39411) (173 aa) fasta scores: E(): 0%2C57.6%25 id in 170 aa%2C and to Vibrio cholerae hypothetical protein VC0702 TR:Q9KU27 (EMBL:AE004156) (183 aa) fasta scores: E(): 0%2C 53.9%25 id in 167 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004156;product=conserved hypothetical protein;protein_id=CAL19133.1;transl_table=11
AL590842.1	EMBL	sequence_feature	478595	479089	.	-	.	ID=id1113;Note=Pfam match to entry PF01931 DUF84%2C Protein of unknown function DUF84%2C score 219.70%2C E-value 4.4e-62;gbkey=misc_feature;inference=protein motif:PF01931
AL590842.1	EMBL	gene	479198	479845	.	+	.	ID=gene451;Name=gpmB;gbkey=Gene;gene=gpmB;gene_biotype=protein_coding;locus_tag=YPO0455
AL590842.1	EMBL	CDS	479198	479845	.	+	0	ID=cds443;Parent=gene451;Dbxref=GOA:Q8ZIP0,InterPro:IPR001345,InterPro:IPR013078,InterPro:IPR023086,InterPro:IPR029033,NCBI_GP:CAL19134.1;Name=CAL19134.1;Note=Similar to Escherichia coli probable phosphoglycerate mutase 2 GpmB SW:PMG2_ECOLI (P36942) (215 aa) fasta scores: E(): 0%2C 74.9%25 id in 215 aa%2C and to Deinococcus radiodurans phosphoglycerate putative mutase DR1393 TR:Q9RUJ3 (EMBL:AE001985) (237 aa) fasta scores: E(): 6e-15%2C 32.4%25 id in 207 aa;gbkey=CDS;gene=gpmB;inference=similar to sequence:INSDC:AE001985;product=putative phosphoglycerate mutase;protein_id=CAL19134.1;transl_table=11
AL590842.1	EMBL	sequence_feature	479210	479758	.	+	.	ID=id1114;Note=Pfam match to entry PF00300 PGAM%2C Phosphoglycerate mutase family%2C score 195.80%2C E-value 6.9e-55;gbkey=misc_feature;gene=gpmB;inference=protein motif:PF00300
AL590842.1	EMBL	sequence_feature	479213	479242	.	+	.	ID=id1115;Note=PS00175 Phosphoglycerate mutase family phosphohistidine signature.;gbkey=misc_feature;gene=gpmB;inference=protein motif:ProSite:PS00175
AL590842.1	EMBL	gene	479842	480708	.	-	.	ID=gene452;Name=rob;gbkey=Gene;gene=rob;gene_biotype=protein_coding;locus_tag=YPO0456
AL590842.1	EMBL	CDS	479842	480708	.	-	0	ID=cds444;Parent=gene452;Dbxref=GOA:Q7CG68,InterPro:IPR009057,InterPro:IPR010499,InterPro:IPR011256,InterPro:IPR018060,InterPro:IPR018062,InterPro:IPR020449,InterPro:IPR029442,UniProtKB/TrEMBL:Q7CG68,NCBI_GP:CAL19135.1;Name=CAL19135.1;Note=Similar to Escherichia coli right origin-binding protein Rob SW:ROB_ECOLI (P27292) (289 aa) fasta scores: E(): 0%2C 68.2%25 id in 289 aa%2C and to Bacillus halodurans possible transcriptional regulator BH3634 TR:Q9K6U1 (EMBL:AP001519) (300 aa) fasta scores: E(): 1.7e-19%2C 30.5%25 id in 311 aa;gbkey=CDS;gene=rob;inference=similar to sequence:INSDC:AP001519;product=putative right origin-binding protein;protein_id=CAL19135.1;transl_table=11
AL590842.1	EMBL	sequence_feature	480388	480648	.	-	.	ID=id1116;Note=Pfam match to entry PF00165 HTH_AraC%2C Bacterial regulatory helix-turn-helix proteins%2C araC family%2C score 124.20%2C E-value 2.4e-33;gbkey=misc_feature;gene=rob;inference=protein motif:PF00165
AL590842.1	EMBL	sequence_feature	480409	480546	.	-	.	ID=id1117;Note=PS00041 Bacterial regulatory proteins%2C araC family signature.;gbkey=misc_feature;gene=rob;inference=protein motif:ProSite:PS00041
AL590842.1	EMBL	gene	480934	481401	.	+	.	ID=gene453;Name=creA;gbkey=Gene;gene=creA;gene_biotype=protein_coding;locus_tag=YPO0457
AL590842.1	EMBL	CDS	480934	481401	.	+	0	ID=cds445;Parent=gene453;Dbxref=InterPro:IPR010292,UniProtKB/TrEMBL:Q7CG69,NCBI_GP:CAL19136.1;Name=CAL19136.1;Note=Similar to Escherichia coli hypothetical protein CreA SW:CREA_ECOLI (P08367) (157 aa) fasta scores: E(): 0%2C78.2%25 id in 156 aa%2C and to Pseudomonas aeruginosa hypothetical protein Pa4564 TR:AAG07952 (EMBL:AE004870) (154 aa) fasta scores: E(): 0%2C 63.9%25 id in 155 aa;gbkey=CDS;gene=creA;inference=similar to sequence:INSDC:AE004870;product=putative exported protein;protein_id=CAL19136.1;transl_table=11
AL590842.1	EMBL	gene	481575	482291	.	-	.	ID=gene454;Name=arcA;gbkey=Gene;gene=arcA;gene_biotype=protein_coding;gene_synonym=cpxC,dye,fexA,msp,seg,sfrA;locus_tag=YPO0458
AL590842.1	EMBL	CDS	481575	482291	.	-	0	ID=cds446;Parent=gene454;Dbxref=GOA:Q7CG70,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:Q7CG70,NCBI_GP:CAL19137.1;Name=CAL19137.1;Note=Similar to Escherichia coli aerobic respiration control protein ArcA SW:ARCA_ECOLI (P03026) (238 aa) fasta scores: E(): 0%2C 92.9%25 id in 238 aa%2C and to Vibrio cholerae aerobic respiration control protein FexA TR:Q9KPJ9 (EMBL:AE004307) (238 aa) fasta scores: E(): 0%2C 85.3%25 id in 238 aa;gbkey=CDS;gene=arcA;inference=similar to sequence:INSDC:AE004307;product=aerobic respiration control protein;protein_id=CAL19137.1;transl_table=11
AL590842.1	EMBL	sequence_feature	481605	481823	.	-	.	ID=id1118;Note=Pfam match to entry PF00486 trans_reg_C%2CTranscriptional regulatory protein%2C C terminal%2C score 100.10%2C E-value 1.2e-28;gbkey=misc_feature;gene=arcA;inference=protein motif:PF00486
AL590842.1	EMBL	sequence_feature	481950	482282	.	-	.	ID=id1119;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 114.50%2C E-value 2.1e-30;gbkey=misc_feature;gene=arcA;inference=protein motif:PF00072
AL590842.1	EMBL	gene	483395	485854	.	+	.	ID=gene455;Name=thrA;gbkey=Gene;gene=thrA;gene_biotype=protein_coding;gene_synonym=thrA1,thrA2;locus_tag=YPO0459
AL590842.1	EMBL	CDS	483395	485854	.	+	0	ID=cds447;Parent=gene455;Dbxref=GOA:Q0WJK7,InterPro:IPR001048,InterPro:IPR001341,InterPro:IPR001342,InterPro:IPR002912,InterPro:IPR005106,InterPro:IPR011147,InterPro:IPR016040,InterPro:IPR018042,InterPro:IPR019811,InterPro:IPR027795,UniProtKB/TrEMBL:Q0WJK7,NCBI_GP:CAL19138.1;Name=CAL19138.1;Note=Similar to Escherichia coli bifunctional aspartokinase/homoserine dehydrogenase I ThrA SW:AK1H_ECOLI (P00561) (820 aa) fasta scores: E(): 0%2C 82.0%25 id in 821 aa%2Cand to Serratia marcescens bifunctional aspartokinase/homoserine dehydrogenase I ThrA SW:AK1H_SERMA (P27725) (819 aa) fasta scores: E(): 0%2C 89.9%25 id in 819 aa;gbkey=CDS;gene=thrA;product=bifunctional aspartokinase/homoserine dehydrogenase I;protein_id=CAL19138.1;transl_table=11
AL590842.1	EMBL	sequence_feature	483395	484159	.	+	.	ID=id1120;Note=Pfam match to entry PF00696 aakinase%2C Amino acid kinase family%2C score 179.00%2C E-value 7.8e-50;gbkey=misc_feature;gene=thrA;inference=protein motif:PF00696
AL590842.1	EMBL	sequence_feature	483401	483427	.	+	.	ID=id1121;Note=PS00324 Aspartokinase signature.;gbkey=misc_feature;gene=thrA;inference=protein motif:ProSite:PS00324
AL590842.1	EMBL	sequence_feature	484877	485836	.	+	.	ID=id1122;Note=Pfam match to entry PF00742 Homoserine_dh%2CHomoserine dehydrogenase%2C score 530.00%2C E-value 1.7e-155;gbkey=misc_feature;gene=thrA;inference=protein motif:PF00742
AL590842.1	EMBL	sequence_feature	485372	485440	.	+	.	ID=id1123;Note=PS01042 Homoserine dehydrogenase signature.;gbkey=misc_feature;gene=thrA;inference=protein motif:ProSite:PS01042
AL590842.1	EMBL	gene	485857	486786	.	+	.	ID=gene456;Name=thrB;gbkey=Gene;gene=thrB;gene_biotype=protein_coding;locus_tag=YPO0460
AL590842.1	EMBL	CDS	485857	486786	.	+	0	ID=cds448;Parent=gene456;Dbxref=GOA:Q8ZIN5,InterPro:IPR000870,InterPro:IPR006203,InterPro:IPR006204,InterPro:IPR013750,InterPro:IPR014721,InterPro:IPR020568,NCBI_GP:CAL19139.1;Name=CAL19139.1;Note=Similar to Escherichia coli homoserine kinase ThrB SW:KHSE_ECOLI (P00547) (310 aa) fasta scores: E(): 0%2C 76.6%25 id in 308 aa%2C and to Serratia marcescens homoserine kinase ThrB SW:KHSE_SERMA (P27722) (309 aa) fasta scores: E(): 0%2C87.4%25 id in 309 aa;gbkey=CDS;gene=thrB;product=homoserine kinase;protein_id=CAL19139.1;transl_table=11
AL590842.1	EMBL	sequence_feature	486061	486252	.	+	.	ID=id1124;Note=Pfam match to entry PF00288 GHMP_kinases%2C GHMP kinases putative ATP-binding proteins%2C score 65.10%2C E-value 5.6e-17;gbkey=misc_feature;gene=thrB;inference=protein motif:PF00288
AL590842.1	EMBL	sequence_feature	486124	486159	.	+	.	ID=id1125;Note=PS00627 GHMP kinases putative ATP-binding domain.;gbkey=misc_feature;gene=thrB;inference=protein motif:ProSite:PS00627
AL590842.1	EMBL	sequence_feature	486127	486159	.	+	.	ID=id1126;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=thrB;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	486790	488079	.	+	.	ID=gene457;Name=thrC;gbkey=Gene;gene=thrC;gene_biotype=protein_coding;locus_tag=YPO0461
AL590842.1	EMBL	CDS	486790	488079	.	+	0	ID=cds449;Parent=gene457;Dbxref=GOA:Q7CG71,InterPro:IPR000634,InterPro:IPR001926,InterPro:IPR004450,InterPro:IPR029144,UniProtKB/TrEMBL:Q7CG71,NCBI_GP:CAL19140.1;Name=CAL19140.1;Note=Similar to Escherichia coli threonine synthase ThrC SW:THRC_ECOLI (P00934) (428 aa) fasta scores: E(): 0%2C 83.1%25 id in 425 aa%2C and to Serratia marcescens threonine synthase ThrC SW:THRC_SERMA (P27735) (429 aa) fasta scores: E(): 0%2C89.3%25 id in 428 aa;gbkey=CDS;gene=thrC;product=threonine synthase;protein_id=CAL19140.1;transl_table=11
AL590842.1	EMBL	sequence_feature	487018	487923	.	+	.	ID=id1127;Note=Pfam match to entry PF00291 PALP%2CPyridoxal-phosphate dependent enzyme%2C score 132.10%2C E-value 1e-35;gbkey=misc_feature;gene=thrC;inference=protein motif:PF00291
AL590842.1	EMBL	sequence_feature	487078	487122	.	+	.	ID=id1128;Note=PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site.;gbkey=misc_feature;gene=thrC;inference=protein motif:ProSite:PS00165
AL590842.1	EMBL	gene	488896	489672	.	-	.	ID=gene458;Name=YPO0462;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0462
AL590842.1	EMBL	CDS	488896	489672	.	-	0	ID=cds450;Parent=gene458;Dbxref=InterPro:IPR005583,NCBI_GP:CAL19141.1;Name=CAL19141.1;Note=Similar to Escherichia coli protein YaaA SW:YAAA_ECOLI (P11288) (258 aa) fasta scores: E(): 0%2C 78.6%25 id in 257 aa%2C and to Vibrio cholerae hypothetical protein VC2355 TR:Q9KPL2 (EMBL:AE004305) (257 aa) fasta scores: E(): 0%2C 65.0%25 id in 257 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004305;product=conserved hypothetical protein;protein_id=CAL19141.1;transl_table=11
AL590842.1	EMBL	sequence_feature	489388	489435	.	-	.	ID=id1129;Note=PS00225 Crystallins beta and gamma 'Greek key' motif signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00225
AL590842.1	EMBL	gene	490204	491157	.	+	.	ID=gene459;Name=talB;gbkey=Gene;gene=talB;gene_biotype=protein_coding;locus_tag=YPO0463
AL590842.1	EMBL	CDS	490204	491157	.	+	0	ID=cds451;Parent=gene459;Dbxref=GOA:Q8ZIN2,InterPro:IPR001585,InterPro:IPR004730,InterPro:IPR013785,InterPro:IPR018225,NCBI_GP:CAL19142.1;Name=CAL19142.1;Note=Similar to Escherichia coli transaldolase B TalB SW:TALB_ECOLI (P30148) (316 aa) fasta scores: E(): 0%2C 88.9%25 id in 316 aa%2C and to Haemophilus influenzae transaldolase Tal SW:TAL_HAEIN (P45055) (316 aa) fasta scores: E(): 0%2C77.3%25 id in 313 aa;gbkey=CDS;gene=talB;product=transaldolase B;protein_id=CAL19142.1;transl_table=11
AL590842.1	EMBL	sequence_feature	490228	490944	.	+	.	ID=id1130;Note=Pfam match to entry PF00923 Transaldolase%2CTransaldolase%2C score 454.00%2C E-value 1.2e-132;gbkey=misc_feature;gene=talB;inference=protein motif:PF00923
AL590842.1	EMBL	sequence_feature	490294	490320	.	+	.	ID=id1131;Note=PS01054 Transaldolase signature 1.;gbkey=misc_feature;gene=talB;inference=protein motif:ProSite:PS01054
AL590842.1	EMBL	sequence_feature	490588	490641	.	+	.	ID=id1132;Note=PS00958 Transaldolase active site.;gbkey=misc_feature;gene=talB;inference=protein motif:ProSite:PS00958
AL590842.1	EMBL	gene	491445	492032	.	+	.	ID=gene460;Name=chlG;gbkey=Gene;gene=chlG;gene_biotype=protein_coding;gene_synonym=mog,mogA;locus_tag=YPO0464
AL590842.1	EMBL	CDS	491445	492032	.	+	0	ID=cds452;Parent=gene460;Dbxref=GOA:Q7CG72,InterPro:IPR001453,InterPro:IPR008284,InterPro:IPR020817,UniProtKB/TrEMBL:Q7CG72,NCBI_GP:CAL19143.1;Name=CAL19143.1;Note=Similar to Escherichia coli molybdopterin biosynthesis protein Mog SW:MOG_ECOLI (P28694) (195 aa) fasta scores: E(): 0%2C 87.2%25 id in 195 aa%2C and to Haemophilus influenzae molybdopterin biosynthesis protein Mog SW:MOG_HAEIN (P44645) (197 aa) fasta scores: E(): 0%2C75.4%25 id in 187 aa;gbkey=CDS;gene=chlG;product=molybdopterin biosynthesis protein;protein_id=CAL19143.1;transl_table=11
AL590842.1	EMBL	sequence_feature	491649	491690	.	+	.	ID=id1133;Note=PS01078 Molybdenum cofactor biosynthesis proteins signature 1.;gbkey=misc_feature;gene=chlG;inference=protein motif:ProSite:PS01078
AL590842.1	EMBL	gene	492160	493548	.	+	.	ID=gene461;Name=YPO0465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0465
AL590842.1	EMBL	CDS	492160	493548	.	+	0	ID=cds453;Parent=gene461;Dbxref=GOA:Q7CG73,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q7CG73,NCBI_GP:CAL19144.1;Name=CAL19144.1;Note=Similar to Pseudomonas aeruginosa probable MFS transporter Pa5370 TR:AAG08755 (EMBL:AE004949) (438 aa) fasta scores: E(): 0%2C 69.2%25 id in 412 aa%2C and to Campylobacter jejuni putative transmembrane transport protein Cj0250C TR:Q9PIP5 (EMBL:AL139074) (436 aa) fasta scores: E(): 0%2C 45.1%25 id in 419 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL139074;product=putative transport protein;protein_id=CAL19144.1;transl_table=11
AL590842.1	EMBL	sequence_feature	492274	493506	.	+	.	ID=id1134;Note=Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporter%2C score 75.80%2C E-value 8.8e-19;gbkey=misc_feature;inference=protein motif:PF00083
AL590842.1	EMBL	sequence_feature	492277	492345	.	+	.	ID=id1135;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	492403	492471	.	+	.	ID=id1136;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	492508	492576	.	+	.	ID=id1137;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	492589	492657	.	+	.	ID=id1138;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	492682	492750	.	+	.	ID=id1139;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	492793	492852	.	+	.	ID=id1140;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	492955	493023	.	+	.	ID=id1141;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	493066	493134	.	+	.	ID=id1142;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	493153	493206	.	+	.	ID=id1143;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	493234	493302	.	+	.	ID=id1144;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	493339	493407	.	+	.	ID=id1145;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	493420	493488	.	+	.	ID=id1146;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	493618	496065	.	-	.	ID=gene462;Name=YPO0466;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0466
AL590842.1	EMBL	CDS	493618	496065	.	-	0	ID=cds454;Parent=gene462;Dbxref=GOA:Q7CG74,InterPro:IPR000182,InterPro:IPR001064,InterPro:IPR011024,InterPro:IPR016181,UniProtKB/TrEMBL:Q7CG74,NCBI_GP:CAL19145.1;Name=CAL19145.1;Note=No significant database matches. CDS DNA contains low GC content%2C 35.33%25;gbkey=CDS;product=hypothetical protein;protein_id=CAL19145.1;transl_table=11
AL590842.1	EMBL	gene	496354	496965	.	-	.	ID=gene463;Name=yaaH;gbkey=Gene;gene=yaaH;gene_biotype=protein_coding;locus_tag=YPO0467
AL590842.1	EMBL	CDS	496354	496965	.	-	0	ID=cds455;Parent=gene463;Dbxref=GOA:Q7CG75,InterPro:IPR000791,UniProtKB/TrEMBL:Q7CG75,NCBI_GP:CAL19146.1;Name=CAL19146.1;Note=Similar to Escherichia coli hypothetical 20.1 kDa protein in mog-htgA intergenic region YaaH or B0010 SW:YAAH_ECOLI (P28695) (188 aa) fasta scores: E(): 0%2C 73.7%25 id in 186 aa%2C and to Vibrio cholerae hypothetical protein Vc0770 TR:Q9KTW0 (EMBL:AE004162) (197 aa) fasta scores: E(): 0%2C 66.8%25 id in 184 aa;gbkey=CDS;gene=yaaH;inference=similar to sequence:INSDC:AE004162;product=putative membrane protein;protein_id=CAL19146.1;transl_table=11
AL590842.1	EMBL	sequence_feature	496402	496962	.	-	.	ID=id1147;Note=Pfam match to entry PF01184 Grp1_Fun34_YaaH%2CGPR1/FUN34/yaaH family%2C score 314.60%2C E-value 1.2e-90;gbkey=misc_feature;gene=yaaH;inference=protein motif:PF01184
AL590842.1	EMBL	sequence_feature	496456	496521	.	-	.	ID=id1148;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yaaH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	496543	496593	.	-	.	ID=id1149;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yaaH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	496606	496671	.	-	.	ID=id1150;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yaaH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	496711	496776	.	-	.	ID=id1151;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yaaH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	496807	496872	.	-	.	ID=id1152;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yaaH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	496888	496953	.	-	.	ID=id1153;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yaaH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	497339	499249	.	+	.	ID=gene464;Name=dnaK;gbkey=Gene;gene=dnaK;gene_biotype=protein_coding;gene_synonym=groP,grpF,seg;locus_tag=YPO0468
AL590842.1	EMBL	CDS	497339	499249	.	+	0	ID=cds456;Parent=gene464;Dbxref=GOA:Q8ZIM7,InterPro:IPR012725,InterPro:IPR013126,InterPro:IPR018181,InterPro:IPR029047,InterPro:IPR029048,NCBI_GP:CAL19147.1;Name=CAL19147.1;Note=Similar to Escherichia coli chaperone protein DnaK SW:DNAK_ECOLI (P04475) (637 aa) fasta scores: E(): 0%2C 91.4%25 id in 638 aa%2C and to Salmonella typhimurium chaperone protein DnaK SW:DNAK_SALTY (Q56073) (637 aa) fasta scores: E(): 0%2C 91.7%25 id in 637 aa;gbkey=CDS;gene=dnaK;product=chaperone protein DnaK;protein_id=CAL19147.1;transl_table=11
AL590842.1	EMBL	sequence_feature	497348	499150	.	+	.	ID=id1154;Note=Pfam match to entry PF00012 HSP70%2C Hsp70 protein%2Cscore 1355.50%2C E-value 0;gbkey=misc_feature;gene=dnaK;inference=protein motif:PF00012
AL590842.1	EMBL	sequence_feature	497357	497380	.	+	.	ID=id1155;Note=PS00297 Heat shock hsp70 proteins family signature 1.;gbkey=misc_feature;gene=dnaK;inference=protein motif:ProSite:PS00297
AL590842.1	EMBL	sequence_feature	497912	497953	.	+	.	ID=id1156;Note=PS00329 Heat shock hsp70 proteins family signature 2.;gbkey=misc_feature;gene=dnaK;inference=protein motif:ProSite:PS00329
AL590842.1	EMBL	sequence_feature	498347	498391	.	+	.	ID=id1157;Note=PS01036 Heat shock hsp70 proteins family signature 3.;gbkey=misc_feature;gene=dnaK;inference=protein motif:ProSite:PS01036
AL590842.1	EMBL	gene	499361	500500	.	+	.	ID=gene465;Name=dnaJ;gbkey=Gene;gene=dnaJ;gene_biotype=protein_coding;gene_synonym=groP;locus_tag=YPO0469
AL590842.1	EMBL	CDS	499361	500500	.	+	0	ID=cds457;Parent=gene465;Dbxref=GOA:Q8ZIM6,InterPro:IPR001305,InterPro:IPR001623,InterPro:IPR002939,InterPro:IPR008971,InterPro:IPR012724,InterPro:IPR018253,NCBI_GP:CAL19148.1;Name=CAL19148.1;Note=Similar to Escherichia coli chaperone protein DnaJ SW:DNAJ_ECOLI (P08622) (375 aa) fasta scores: E(): 0%2C 86.5%25 id in 378 aa%2C and to Salmonella typhimurium chaperone protein DnaJ SW:DNAJ_SALTY (Q60004) (378 aa) fasta scores: E(): 0%2C 87.6%25 id in 379 aa;gbkey=CDS;gene=dnaJ;product=chaperone protein DnaJ;protein_id=CAL19148.1;transl_table=11
AL590842.1	EMBL	sequence_feature	499373	499570	.	+	.	ID=id1158;Note=Pfam match to entry PF00226 DnaJ%2C DnaJ domain%2C score 127.90%2C E-value 1.9e-34;gbkey=misc_feature;gene=dnaJ;inference=protein motif:PF00226
AL590842.1	EMBL	sequence_feature	499499	499558	.	+	.	ID=id1159;Note=PS00636 Nt-dnaJ domain signature.;gbkey=misc_feature;gene=dnaJ;inference=protein motif:ProSite:PS00636
AL590842.1	EMBL	sequence_feature	499760	500002	.	+	.	ID=id1160;Note=Pfam match to entry PF00684 DnaJ_CXXCXGXG%2C DnaJ central domain (4 repeats)%2C score 172.80%2C E-value 5.5e-48;gbkey=misc_feature;gene=dnaJ;inference=protein motif:PF00684
AL590842.1	EMBL	sequence_feature	499799	499873	.	+	.	ID=id1161;Note=PS00637 CXXCXGXG dnaJ domain signature.;gbkey=misc_feature;gene=dnaJ;inference=protein motif:ProSite:PS00637
AL590842.1	EMBL	sequence_feature	499799	499816	.	+	.	ID=id1162;Note=PS00190 Cytochrome c family heme-binding site signature.;gbkey=misc_feature;gene=dnaJ;inference=protein motif:ProSite:PS00190
AL590842.1	EMBL	sequence_feature	499958	499975	.	+	.	ID=id1163;Note=PS00190 Cytochrome c family heme-binding site signature.;gbkey=misc_feature;gene=dnaJ;inference=protein motif:ProSite:PS00190
AL590842.1	EMBL	sequence_feature	500039	500404	.	+	.	ID=id1164;Note=Pfam match to entry PF01556 DnaJ_C%2C DnaJ C terminal region%2C score 278.50%2C E-value 8.9e-80;gbkey=misc_feature;gene=dnaJ;inference=protein motif:PF01556
AL590842.1	EMBL	gene	500743	501927	.	+	.	ID=gene466;Name=ant;gbkey=Gene;gene=ant;gene_biotype=protein_coding;gene_synonym=b0019,nhaA;locus_tag=YPO0470
AL590842.1	EMBL	CDS	500743	501927	.	+	0	ID=cds458;Parent=gene466;Dbxref=GOA:Q7CG77,InterPro:IPR004670,InterPro:IPR023171,NCBI_GP:CAL19149.1;Name=CAL19149.1;Note=Similar to Escherichia coli sodium-proton antiporter 1 NhaA SW:NHAA_ECOLI (P13738) (388 aa) fasta scores: E(): 0%2C 65.9%25 id in 381 aa%2C and to Vibrio cholerae sodium-proton antiporter affecting protein NhaA TR:O85187 (EMBL:AF051158) (382 aa) fasta scores: E(): 0%2C 64.3%25 id in 389 aa;gbkey=CDS;gene=ant;inference=similar to sequence:INSDC:AF051158;product=sodium-proton antiporter;protein_id=CAL19149.1;transl_table=11
AL590842.1	EMBL	sequence_feature	501022	501090	.	+	.	ID=id1165;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ant;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	501115	501174	.	+	.	ID=id1166;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ant;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	501202	501270	.	+	.	ID=id1167;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ant;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	501283	501351	.	+	.	ID=id1168;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ant;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	501379	501447	.	+	.	ID=id1169;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ant;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	501514	501582	.	+	.	ID=id1170;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ant;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	501610	501678	.	+	.	ID=id1171;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ant;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	501724	501792	.	+	.	ID=id1172;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ant;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	501835	501894	.	+	.	ID=id1173;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ant;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	502057	502956	.	+	.	ID=gene467;Name=antO;gbkey=Gene;gene=antO;gene_biotype=protein_coding;gene_synonym=b0020,nhaR;locus_tag=YPO0471
AL590842.1	EMBL	CDS	502057	502956	.	+	0	ID=cds459;Parent=gene467;Dbxref=GOA:Q7CG78,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CG78,NCBI_GP:CAL19150.1;Name=CAL19150.1;Note=Similar to Escherichia coli transcriptional activator protein NhaR SW:NHAR_ECOLI (P10087) (301 aa) fasta scores: E(): 0%2C 78.5%25 id in 298 aa%2C and to Vibrio cholerae transcriptional activator protein NhaR SW:NHAR_VIBCH (P52692) (296 aa) fasta scores: E(): 0%2C 67.2%25 id in 296 aa;gbkey=CDS;gene=antO;product=transcriptional activator protein NhaR;protein_id=CAL19150.1;transl_table=11
AL590842.1	EMBL	sequence_feature	502078	502503	.	+	.	ID=id1174;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 133.00%2C E-value 5.5e-36;gbkey=misc_feature;gene=antO;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	502120	502212	.	+	.	ID=id1175;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature.;gbkey=misc_feature;gene=antO;inference=protein motif:ProSite:PS00044
AL590842.1	EMBL	gene	503087	503350	.	-	.	ID=gene468;Name=b0023;gbkey=Gene;gene=b0023;gene_biotype=protein_coding;gene_synonym=rpsT;locus_tag=YPO0472
AL590842.1	EMBL	CDS	503087	503350	.	-	0	ID=cds460;Parent=gene468;Dbxref=GOA:Q8ZIM3,InterPro:IPR002583,NCBI_GP:CAL19151.1;Name=CAL19151.1;Note=Similar to Escherichia coli 30S ribosomal protein S20 RpsT SW:RS20_ECOLI (P02378) (86 aa) fasta scores: E(): 1.1e-26%2C 87.1%25 id in 85 aa%2C and to Proteus mirabilis 30S ribosomal protein S20 RpsT SW:RS20_PROMI (P42275) (72 aa) fasta scores: E(): 2.2e-22%2C 85.9%25 id in 71 aa;gbkey=CDS;gene=b0023;product=30S ribosomal protein S20;protein_id=CAL19151.1;transl_table=11
AL590842.1	EMBL	sequence_feature	503096	503347	.	-	.	ID=id1176;Note=Pfam match to entry PF01649 Ribosomal_S20p%2CRibosomal protein S20%2C score 159.30%2C E-value 6.4e-44;gbkey=misc_feature;gene=b0023;inference=protein motif:PF01649
AL590842.1	EMBL	gene	503372	503548	.	-	.	ID=gene469;Name=YPO0473;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0473
AL590842.1	EMBL	CDS	503372	503548	.	-	0	ID=cds461;Parent=gene469;Dbxref=UniProtKB/TrEMBL:Q74Q15,NCBI_GP:CAL19152.1;Name=CAL19152.1;Note=Doubtful CDS. No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19152.1;transl_table=11
AL590842.1	EMBL	gene	503765	504703	.	+	.	ID=gene470;Name=b0025;gbkey=Gene;gene=b0025;gene_biotype=protein_coding;gene_synonym=ribF;locus_tag=YPO0474
AL590842.1	EMBL	CDS	503765	504703	.	+	0	ID=cds462;Parent=gene470;Dbxref=GOA:Q7CG79,InterPro:IPR002606,InterPro:IPR004821,InterPro:IPR014729,InterPro:IPR015864,InterPro:IPR015865,InterPro:IPR023465,InterPro:IPR023468,UniProtKB/TrEMBL:Q7CG79,NCBI_GP:CAL19153.1;Name=CAL19153.1;Note=Similar to Escherichia coli riboflavin biosynthesis protein RibF SW:RIBF_ECOLI (P08391) (313 aa) fasta scores: E(): 0%2C 75.3%25 id in 312 aa%2C and to Vibrio cholerae riboflavin kinase/FMN adenylyltransferase VC0681 TR:Q9KU48 (EMBL:AE004154) (322 aa) fasta scores: E(): 0%2C 64.7%25 id in 306 aa;gbkey=CDS;gene=b0025;inference=similar to sequence:INSDC:AE004154;product=riboflavin biosynthesis protein (includes: riboflavin kinase and FMN adenyltransferase);protein_id=CAL19153.1;transl_table=11
AL590842.1	EMBL	sequence_feature	504311	504685	.	+	.	ID=id1177;Note=Pfam match to entry PF01687 FAD_Synth%2C Riboflavin kinase / FAD synthetase%2C score 205.90%2C E-value 6.3e-58;gbkey=misc_feature;gene=b0025;inference=protein motif:PF01687
AL590842.1	EMBL	gene	504735	507551	.	+	.	ID=gene471;Name=b0026;gbkey=Gene;gene=b0026;gene_biotype=protein_coding;gene_synonym=ileS,ilvS;locus_tag=YPO0475
AL590842.1	EMBL	CDS	504735	507551	.	+	0	ID=cds463;Parent=gene471;Dbxref=GOA:Q8ZIM0,InterPro:IPR001412,InterPro:IPR002300,InterPro:IPR002301,InterPro:IPR009008,InterPro:IPR009080,InterPro:IPR010663,InterPro:IPR013155,InterPro:IPR014729,InterPro:IPR023585,NCBI_GP:CAL19154.1;Name=CAL19154.1;Note=Similar to Escherichia coli isoleucyl-tRNA synthetase IleS SW:SYI_ECOLI (P00956) (937 aa) fasta scores: E(): 0%2C 83.7%25 id in 937 aa%2C and to Vibrio cholerae isoleucyl-tRNA synthetase Vc0682 TR:Q9KU47 (EMBL:AE004154) (949 aa) fasta scores: E(): 0%2C 69.8%25 id in 951 aa;gbkey=CDS;gene=b0026;inference=similar to sequence:INSDC:AE004154;product=isoleucyl-tRNA synthetase;protein_id=CAL19154.1;transl_table=11
AL590842.1	EMBL	sequence_feature	504813	506834	.	+	.	ID=id1178;Note=Pfam match to entry PF00133 tRNA-synt_1%2C tRNA synthetases class I (I%2C L%2C M and V)%2C score 1166.70%2C E-value 0;gbkey=misc_feature;gene=b0026;inference=protein motif:PF00133
AL590842.1	EMBL	sequence_feature	504906	504941	.	+	.	ID=id1179;Note=PS00178 Aminoacyl-transfer RNA synthetases class-I signature.;gbkey=misc_feature;gene=b0026;inference=protein motif:ProSite:PS00178
AL590842.1	EMBL	sequence_feature	505590	505622	.	+	.	ID=id1180;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=b0026;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	507551	508060	.	+	.	ID=gene472;Name=b0027;gbkey=Gene;gene=b0027;gene_biotype=protein_coding;gene_synonym=lspA;locus_tag=YPO0476
AL590842.1	EMBL	CDS	507551	508060	.	+	0	ID=cds464;Parent=gene472;Dbxref=GOA:Q8ZIL9,InterPro:IPR001872,NCBI_GP:CAL19155.1;Name=CAL19155.1;Note=Similar to Escherichia coli lipoprotein signal peptidase LspA SW:LSPA_ECOLI (P00804) (164 aa) fasta scores: E(): 0%2C 70.1%25 id in 157 aa%2C and to Enterobacter aerogenes lipoprotein signal peptidase LspA SW:LSPA_ENTAE (P13514) (165 aa) fasta scores: E(): 0%2C 67.3%25 id in 162 aa;gbkey=CDS;gene=b0027;inference=protein motif:TMHMM:2.0;product=lipoprotein signal peptidase;protein_id=CAL19155.1;transl_table=11
AL590842.1	EMBL	sequence_feature	507578	508042	.	+	.	ID=id1181;Note=Pfam match to entry PF01252 Peptidase_A8%2C Signal peptidase (SPase) II%2C score 256.60%2C E-value 3.4e-73;gbkey=misc_feature;gene=b0027;inference=protein motif:PF01252
AL590842.1	EMBL	sequence_feature	507587	507655	.	+	.	ID=id1182;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=b0027;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	507746	507814	.	+	.	ID=id1183;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=b0027;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	507833	507901	.	+	.	ID=id1184;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=b0027;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	507866	507898	.	+	.	ID=id1185;Note=PS00855 Signal peptidases II signature.;gbkey=misc_feature;gene=b0027;inference=protein motif:ProSite:PS00855
AL590842.1	EMBL	sequence_feature	507959	508027	.	+	.	ID=id1186;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=b0027;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	508128	508586	.	+	.	ID=gene473;Name=b0028;gbkey=Gene;gene=b0028;gene_biotype=protein_coding;gene_synonym=fkpB,slpA;locus_tag=YPO0476a
AL590842.1	EMBL	CDS	508128	508586	.	+	0	ID=cds465;Parent=gene473;Dbxref=GOA:Q0WJI9,InterPro:IPR001179,UniProtKB/TrEMBL:Q0WJI9,NCBI_GP:CAL19156.1;Name=CAL19156.1;Note=Similar to Escherichia coli FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase FkpB SW:FKBX_ECOLI (P22563) (148 aa) fasta scores: E(): 0%2C 68.8%25 id in 144 aa%2Cand to Klebsiella pneumoniae FKBP-type peptidyl-propyl cis-trans isomerase SlpA TR:Q9RF46 (EMBL:AF201388) (149 aa) fasta scores: E(): 0%2C 70.1%25 id in 144 aa;gbkey=CDS;gene=b0028;inference=similar to sequence:INSDC:AF201388;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=CAL19156.1;transl_table=11
AL590842.1	EMBL	sequence_feature	508152	508199	.	+	.	ID=id1187;Note=PS00453 FKBP-type peptidyl-prolyl cis-trans isomerase signature 1.;gbkey=misc_feature;gene=b0028;inference=protein motif:ProSite:PS00453
AL590842.1	EMBL	sequence_feature	508245	508331	.	+	.	ID=id1188;Note=PS00454 FKBP-type peptidyl-prolyl cis-trans isomerase signature 2.;gbkey=misc_feature;gene=b0028;inference=protein motif:ProSite:PS00454
AL590842.1	EMBL	gene	508567	509520	.	+	.	ID=gene474;Name=b0029;gbkey=Gene;gene=b0029;gene_biotype=protein_coding;gene_synonym=lytB;locus_tag=YPO0477
AL590842.1	EMBL	CDS	508567	509520	.	+	0	ID=cds466;Parent=gene474;Dbxref=GOA:P58680,InterPro:IPR003451,NCBI_GP:CAL19157.1;Name=CAL19157.1;Note=Similar to Escherichia coli protein involved in penicillin tolerance and control of the stringent response%2CLytB SW:LYTB_ECOLI (P22565) (316 aa) fasta scores: E(): 0%2C82.6%25 id in 317 aa%2C and to Vibrio cholerae LytB protein Vc0685 TR:Q9KU44 (EMBL:AE004154) (320 aa) fasta scores: E(): 0%2C 68.7%25 id in 319 aa. Note the large overlap with the upsteam CDS.;gbkey=CDS;gene=b0029;inference=similar to sequence:INSDC:AE004154;product=LytB protein;protein_id=CAL19157.1;transl_table=11
AL590842.1	EMBL	sequence_feature	508573	509424	.	+	.	ID=id1189;Note=Pfam match to entry PF02401 LYTB%2C %2C score 593.50%2CE-value 1.3e-174;gbkey=misc_feature;gene=b0029;inference=protein motif:PF02401
AL590842.1	EMBL	gene	509549	509713	.	+	.	ID=gene475;Name=YPO0478;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0478
AL590842.1	EMBL	CDS	509549	509713	.	+	0	ID=cds467;Parent=gene475;Dbxref=UniProtKB/TrEMBL:Q74Q19,NCBI_GP:CAL19158.1;Name=CAL19158.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19158.1;transl_table=11
AL590842.1	EMBL	repeat_region	509757	510468	.	+	.	ID=id1190;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	509902	510360	.	+	.	ID=gene476;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO0479
AL590842.1	EMBL	CDS	509902	510360	.	+	0	ID=cds468;Parent=gene476;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL19159.1;Name=CAL19159.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL19159.1;transl_table=11
AL590842.1	EMBL	sequence_feature	509956	510267	.	+	.	ID=id1191;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	510813	511634	.	+	.	ID=gene477;Name=b0031;gbkey=Gene;gene=b0031;gene_biotype=protein_coding;gene_synonym=dapB;locus_tag=YPO0480
AL590842.1	EMBL	CDS	510813	511634	.	+	0	ID=cds469;Parent=gene477;Dbxref=GOA:Q8ZIL6,InterPro:IPR000846,InterPro:IPR011770,InterPro:IPR016040,InterPro:IPR022663,InterPro:IPR022664,InterPro:IPR023940,NCBI_GP:CAL19160.1;Name=CAL19160.1;Note=Similar to Escherichia coli dihydrodipicolinate reductase DapB SW:DAPB_ECOLI (P04036) (273 aa) fasta scores: E(): 0%2C 79.5%25 id in 273 aa%2C and to Haemophilus influenzae dihydrodipicolinate reductase DapB SW:DAPB_HAEIN (P45153) (270 aa) fasta scores: E(): 0%2C 71.0%25 id in 269 aa;gbkey=CDS;gene=b0031;product=dihydrodipicolinate reductase;protein_id=CAL19160.1;transl_table=11
AL590842.1	EMBL	sequence_feature	510828	511400	.	+	.	ID=id1192;Note=Pfam match to entry PF01113 DapB%2CDihydrodipicolinate reductase%2C score 359.00%2C E-value 4.9e-104;gbkey=misc_feature;gene=b0031;inference=protein motif:PF01113
AL590842.1	EMBL	sequence_feature	511272	511325	.	+	.	ID=id1193;Note=PS01298 Dihydrodipicolinate reductase signature.;gbkey=misc_feature;gene=b0031;inference=protein motif:ProSite:PS01298
AL590842.1	EMBL	gene	512107	513282	.	+	.	ID=gene478;Name=b0032;gbkey=Gene;gene=b0032;gene_biotype=protein_coding;gene_synonym=carA,pyrA;locus_tag=YPO0481
AL590842.1	EMBL	CDS	512107	513282	.	+	0	ID=cds470;Parent=gene478;Dbxref=GOA:Q8ZIL5,InterPro:IPR002474,InterPro:IPR006274,InterPro:IPR017926,InterPro:IPR029062,NCBI_GP:CAL19161.1;Name=CAL19161.1;Note=Similar to Escherichia coli carbamoyl-phosphate synthase small chain CarA SW:CARA_ECOLI (P00907) (382 aa) fasta scores: E(): 0%2C 86.4%25 id in 381 aa%2C and to Salmonella typhimurium carbamoyl-phosphate synthase small chain CarA SW:CARA_SALTY (P14845) (382 aa) fasta scores: E(): 0%2C 86.4%25 id in 381 aa;gbkey=CDS;gene=b0032;product=carbamoyl-phosphate synthase small chain;protein_id=CAL19161.1;transl_table=11
AL590842.1	EMBL	sequence_feature	512119	512598	.	+	.	ID=id1194;Note=Pfam match to entry PF00988 CPSase_sm_chain%2CCarbamoyl-phosphate synthase small chain%2C CPSase domain%2Cscore 330.10%2C E-value 2.5e-95;gbkey=misc_feature;gene=b0032;inference=protein motif:PF00988
AL590842.1	EMBL	sequence_feature	512689	513225	.	+	.	ID=id1195;Note=Pfam match to entry PF00117 GATase%2C Glutamine amidotransferase class-I%2C score 248.90%2C E-value 6.9e-71;gbkey=misc_feature;gene=b0032;inference=protein motif:PF00117
AL590842.1	EMBL	sequence_feature	512896	512931	.	+	.	ID=id1196;Note=PS00442 Glutamine amidotransferases class-I active site.;gbkey=misc_feature;gene=b0032;inference=protein motif:ProSite:PS00442
AL590842.1	EMBL	gene	513298	516531	.	+	.	ID=gene479;Name=b0033;gbkey=Gene;gene=b0033;gene_biotype=protein_coding;gene_synonym=carB,pyrA;locus_tag=YPO0482
AL590842.1	EMBL	CDS	513298	516531	.	+	0	ID=cds471;Parent=gene479;Dbxref=GOA:Q8ZIL4,InterPro:IPR005479,InterPro:IPR005480,InterPro:IPR005481,InterPro:IPR005483,InterPro:IPR006275,InterPro:IPR011607,InterPro:IPR011761,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016185,NCBI_GP:CAL19162.1;Name=CAL19162.1;Note=Similar to Escherichia coli carbamoyl-phosphate synthase large chain CarB SW:CARB_ECOLI (P00968) (1072 aa) fasta scores: E(): 0%2C 92.6%25 id in 1072 aa%2C and to Salmonella typhimurium carbamoyl-phosphate synthase large chain CarB SW:CARB_SALTY (P14846) (1074 aa) fasta scores: E(): 0%2C 92.7%25 id in 1072 aa;gbkey=CDS;gene=b0033;product=carbamoyl-phosphate synthase large chain;protein_id=CAL19162.1;transl_table=11
AL590842.1	EMBL	sequence_feature	513322	514518	.	+	.	ID=id1197;Note=Pfam match to entry PF00289 CPSase_L_chain%2CCarbamoyl-phosphate synthase (CPSase)%2C score 762.90%2CE-value 1.3e-225;gbkey=misc_feature;gene=b0033;inference=protein motif:PF00289
AL590842.1	EMBL	sequence_feature	513337	513369	.	+	.	ID=id1198;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=b0033;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	513787	513831	.	+	.	ID=id1199;Note=PS00866 Carbamoyl-phosphate synthase subdomain signature 1.;gbkey=misc_feature;gene=b0033;inference=protein motif:ProSite:PS00866
AL590842.1	EMBL	sequence_feature	514186	514209	.	+	.	ID=id1200;Note=PS00867 Carbamoyl-phosphate synthase subdomain signature 2.;gbkey=misc_feature;gene=b0033;inference=protein motif:ProSite:PS00867
AL590842.1	EMBL	sequence_feature	514978	515925	.	+	.	ID=id1201;Note=Pfam match to entry PF00289 CPSase_L_chain%2CCarbamoyl-phosphate synthase (CPSase)%2C score 188.30%2CE-value 5.9e-53;gbkey=misc_feature;gene=b0033;inference=protein motif:PF00289
AL590842.1	EMBL	sequence_feature	515425	515469	.	+	.	ID=id1202;Note=PS00866 Carbamoyl-phosphate synthase subdomain signature 1.;gbkey=misc_feature;gene=b0033;inference=protein motif:ProSite:PS00866
AL590842.1	EMBL	sequence_feature	515812	515835	.	+	.	ID=id1203;Note=PS00867 Carbamoyl-phosphate synthase subdomain signature 2.;gbkey=misc_feature;gene=b0033;inference=protein motif:ProSite:PS00867
AL590842.1	EMBL	sequence_feature	515983	516111	.	+	.	ID=id1204;Note=Pfam match to entry PF00289 CPSase_L_chain%2CCarbamoyl-phosphate synthase (CPSase)%2C score 14.50%2C E-value 0.003;gbkey=misc_feature;gene=b0033;inference=protein motif:PF00289
AL590842.1	EMBL	sequence_feature	516130	516423	.	+	.	ID=id1205;Note=Pfam match to entry PF02142 MGS%2C Methylglyoxal synthase%2C score 121.70%2C E-value 1.4e-32;gbkey=misc_feature;gene=b0033;inference=protein motif:PF02142
AL590842.1	EMBL	gene	516759	517373	.	-	.	ID=gene480;Name=YPO0483;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0483
AL590842.1	EMBL	CDS	516759	517373	.	-	0	ID=cds472;Parent=gene480;Dbxref=GOA:Q0WJI2,InterPro:IPR001123,UniProtKB/TrEMBL:Q0WJI2,NCBI_GP:CAL19163.1;Name=CAL19163.1;Note=Similar to Escherichia coli threonine efflux protein RhtC SW:RHTC_ECOLI (P27846) (206 aa) fasta scores: E(): 2.9e-17%2C 31.6%25 id in 206 aa%2C and to Bacillus subtilis hypothetical 23.4 kDa protein in aapA-sigV intergenic region YrhP SW:YRHP_BACSU (O05406) (210 aa) fasta scores: E(): 1.2e-19%2C 34.1%25 id in 211 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative LysE type translocator;protein_id=CAL19163.1;transl_table=11
AL590842.1	EMBL	sequence_feature	516846	517172	.	-	.	ID=id1206;Note=Pfam match to entry PF01810 LysE%2C LysE type translocator%2C score 60.70%2C E-value 3.1e-14;gbkey=misc_feature;inference=protein motif:PF01810
AL590842.1	EMBL	sequence_feature	516861	516926	.	-	.	ID=id1207;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	516972	517037	.	-	.	ID=id1208;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	517101	517166	.	-	.	ID=id1209;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	517182	517247	.	-	.	ID=id1210;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	517697	518497	.	+	.	ID=gene481;Name=b4364;gbkey=Gene;gene=b4364;gene_biotype=protein_coding;gene_synonym=yjjP;locus_tag=YPO0484
AL590842.1	EMBL	CDS	517697	518497	.	+	0	ID=cds473;Parent=gene481;Dbxref=InterPro:IPR010619,UniProtKB/TrEMBL:Q7CG82,NCBI_GP:CAL19164.1;Name=CAL19164.1;Note=Similar to Escherichia coli hypothetical 30.5 kDa protein in dnaT-bglJ intergenic region YjjP SW:YJJP_ECOLI (P39402) (277 aa) fasta scores: E(): 0%2C 74.1%25 id in 251 aa%2Cand to Vibrio cholerae hypothetical protein Vc0438 TR:Q9KUS7 (EMBL:AE004131) (289 aa) fasta scores: E(): 0%2C49.4%25 id in 253 aa;gbkey=CDS;gene=b4364;inference=similar to sequence:INSDC:AE004131;product=putative membrane protein;protein_id=CAL19164.1;transl_table=11
AL590842.1	EMBL	sequence_feature	518129	518188	.	+	.	ID=id1211;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4364;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	518222	518290	.	+	.	ID=id1212;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4364;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	518303	518371	.	+	.	ID=id1213;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4364;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	518408	518476	.	+	.	ID=id1214;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=b4364;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	518494	518949	.	+	.	ID=gene482;Name=YPO0485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0485
AL590842.1	EMBL	CDS	518494	518949	.	+	0	ID=cds474;Parent=gene482;Dbxref=GOA:Q74Q23,InterPro:IPR020914,InterPro:IPR024528,NCBI_GP:CAL19165.1;Name=CAL19165.1;Note=Similar to Vibrio cholerae hypothetical protein Vc0439 TR:Q9KUS6 (EMBL:AE004131) (161 aa) fasta scores: E(): 0%2C 60.7%25 id in 150 aa%2C and to Escherichia coli protein YjjB SW:YJJB_ECOLI (P18389) (128 aa) fasta scores: E(): 2.6e-26%2C 73.1%25 id in 104 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004131;product=putative membrane protein;protein_id=CAL19165.1;transl_table=11
AL590842.1	EMBL	sequence_feature	518506	518574	.	+	.	ID=id1215;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	518632	518700	.	+	.	ID=id1216;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	518734	518802	.	+	.	ID=id1217;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	518860	518928	.	+	.	ID=id1218;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	519099	519581	.	+	.	ID=gene483;Name=folA;gbkey=Gene;gene=folA;gene_biotype=protein_coding;gene_synonym=tmrA;locus_tag=YPO0486
AL590842.1	EMBL	CDS	519099	519581	.	+	0	ID=cds475;Parent=gene483;Dbxref=GOA:Q7CG83,InterPro:IPR001796,InterPro:IPR012259,InterPro:IPR017925,InterPro:IPR024072,PDB:3Q1H,PDB:4QI9,UniProtKB/TrEMBL:Q7CG83,NCBI_GP:CAL19166.1;Name=CAL19166.1;Note=Similar to Escherichia coli dihydrofolate reductase FolA SW:DYR_ECOLI (P00379) (159 aa) fasta scores: E(): 0%2C80.5%25 id in 159 aa%2C and to Enterobacter aerogenes dihydrofolate reductase FolA SW:DYR_ENTAE (P31074) (159 aa) fasta scores: E(): 0%2C 80.5%25 id in 159 aa;gbkey=CDS;gene=folA;product=dihydrofolate reductase;protein_id=CAL19166.1;transl_table=11
AL590842.1	EMBL	sequence_feature	519108	519479	.	+	.	ID=id1219;Note=Pfam match to entry PF00186 DiHfolate_red%2CDihydrofolate reductase%2C score 194.10%2C E-value 1.6e-55;gbkey=misc_feature;gene=folA;inference=protein motif:PF00186
AL590842.1	EMBL	sequence_feature	519138	519206	.	+	.	ID=id1220;Note=PS00075 Dihydrofolate reductase signature.;gbkey=misc_feature;gene=folA;inference=protein motif:ProSite:PS00075
AL590842.1	EMBL	repeat_region	519648	520359	.	+	.	ID=id1221;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	519793	520251	.	+	.	ID=gene484;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO0487
AL590842.1	EMBL	CDS	519793	520251	.	+	0	ID=cds476;Parent=gene484;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL19167.1;Name=CAL19167.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL19167.1;transl_table=11
AL590842.1	EMBL	sequence_feature	519847	520158	.	+	.	ID=id1222;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	520786	521007	.	+	.	ID=gene485;Name=YPO0488;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0488
AL590842.1	EMBL	CDS	520786	521007	.	+	0	ID=cds477;Parent=gene485;Dbxref=InterPro:IPR022231,UniProtKB/TrEMBL:Q74Q26,NCBI_GP:CAL19168.1;Name=CAL19168.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19168.1;transl_table=11
AL590842.1	EMBL	gene	521134	521598	.	+	.	ID=gene486;Name=YPO0489;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0489
AL590842.1	EMBL	CDS	521134	521598	.	+	0	ID=cds478;Parent=gene486;Dbxref=InterPro:IPR022231,UniProtKB/TrEMBL:Q7CG85,NCBI_GP:CAL19169.1;Name=CAL19169.1;Note=No significant database matches;gbkey=CDS;product=putative exported protein;protein_id=CAL19169.1;transl_table=11
AL590842.1	EMBL	gene	521688	522557	.	-	.	ID=gene487;Name=apaH;gbkey=Gene;gene=apaH;gene_biotype=protein_coding;gene_synonym=b0049;locus_tag=YPO0490
AL590842.1	EMBL	CDS	521688	522557	.	-	0	ID=cds479;Parent=gene487;Dbxref=GOA:Q8ZIK7,InterPro:IPR004617,InterPro:IPR004843,InterPro:IPR029052,NCBI_GP:CAL19170.1;Name=CAL19170.1;Note=Similar to Escherichia coli bis(5'nucleosyl)-tetraphosphatase ApaH SW:APAH_ECOLI (P05637) (280 aa) fasta scores: E(): 0%2C 80.1%25 id in 266 aa%2Cand to Salmonella typhimurium bis(5'nucleosyl)-tetraphosphatase ApaH SW:APAH_SALTY (Q56018) (280 aa) fasta scores: E(): 0%2C 80.5%25 id in 266 aa;gbkey=CDS;gene=apaH;product=bis(5'nucleosyl)-tetraphosphatase;protein_id=CAL19170.1;transl_table=11
AL590842.1	EMBL	gene	522574	522951	.	-	.	ID=gene488;Name=apaG;gbkey=Gene;gene=apaG;gene_biotype=protein_coding;gene_synonym=corD;locus_tag=YPO0491
AL590842.1	EMBL	CDS	522574	522951	.	-	0	ID=cds480;Parent=gene488;Dbxref=InterPro:IPR007474,InterPro:IPR023065,NCBI_GP:CAL19171.1;Name=CAL19171.1;Note=Similar to Salmonella typhimurium ApaG protein SW:APAG_SALTY (Q56017) (125 aa) fasta scores: E(): 0%2C 72.0%25 id in 125 aa%2C and to Escherichia coli ApaG protein SW:APAG_ECOLI (P05636) (125 aa) fasta scores: E(): 0%2C 72.8%25 id in 125 aa. The function of ApaG is unknown%2C however%2Cmutations in apaG/corD give a phenotype of low-level Co2+ resistance. They also decrease Mg2+ efflux but not influx via the CorA Mg2+ transport system;gbkey=CDS;gene=apaG;product=ApaG protein homologue;protein_id=CAL19171.1;transl_table=11
AL590842.1	EMBL	gene	522965	523783	.	-	.	ID=gene489;Name=b0051;gbkey=Gene;gene=b0051;gene_biotype=protein_coding;gene_synonym=ksgA,rsmA;locus_tag=YPO0492
AL590842.1	EMBL	CDS	522965	523783	.	-	0	ID=cds481;Parent=gene489;Dbxref=GOA:Q8ZIK5,InterPro:IPR001737,InterPro:IPR011530,InterPro:IPR020596,InterPro:IPR020598,InterPro:IPR023165,InterPro:IPR029063,NCBI_GP:CAL19172.1;Name=CAL19172.1;Note=Similar to Escherichia coli dimethyladenosine transferase KsgA SW:KSGA_ECOLI (P06992) (273 aa) fasta scores: E(): 0%2C 80.7%25 id in 270 aa%2C and to Haemophilus influenzae dimethyladenosine transferase KsgA SW:KSGA_HAEIN (P44749) (287 aa) fasta scores: E(): 0%2C 65.5%25 id in 275 aa;gbkey=CDS;gene=b0051;product=dimethyladenosine transferase;protein_id=CAL19172.1;transl_table=11
AL590842.1	EMBL	sequence_feature	522998	523735	.	-	.	ID=id1223;Note=Pfam match to entry PF00398 RrnaAD%2C Ribosomal RNA adenine dimethylases%2C score 350.90%2C E-value 2e-108;gbkey=misc_feature;gene=b0051;inference=protein motif:PF00398
AL590842.1	EMBL	sequence_feature	523580	523663	.	-	.	ID=id1224;Note=PS01131 Ribosomal RNA adenine dimethylases signature.;gbkey=misc_feature;gene=b0051;inference=protein motif:ProSite:PS01131
AL590842.1	EMBL	gene	523776	524771	.	-	.	ID=gene490;Name=pdxA;gbkey=Gene;gene=pdxA;gene_biotype=protein_coding;locus_tag=YPO0493
AL590842.1	EMBL	CDS	523776	524771	.	-	0	ID=cds482;Parent=gene490;Dbxref=GOA:P58719,InterPro:IPR005255,InterPro:IPR024084,PDB:3LXY,NCBI_GP:CAL19173.1;Name=CAL19173.1;Note=Similar to Escherichia coli pyridoxal phosphate biosynthetic protein PdxA SW:PDXA_ECOLI (P19624) (329 aa) fasta scores: E(): 0%2C 74.9%25 id in 323 aa%2C and to Vibrio cholerae pyridoxal phosphate biosynthetic protein PdxA TR:Q9KUS1 (EMBL:AE004131) (330 aa) fasta scores: E(): 0%2C60.7%25 id in 328 aa;gbkey=CDS;gene=pdxA;inference=similar to sequence:INSDC:AE004131;product=pyridoxal phosphate biosynthetic protein;protein_id=CAL19173.1;transl_table=11
AL590842.1	EMBL	gene	524755	526059	.	-	.	ID=gene491;Name=b0053;gbkey=Gene;gene=b0053;gene_biotype=protein_coding;gene_synonym=surA;locus_tag=YPO0494
AL590842.1	EMBL	CDS	524755	526059	.	-	0	ID=cds483;Parent=gene491;Dbxref=GOA:Q7CG87,InterPro:IPR000297,InterPro:IPR015391,InterPro:IPR023034,InterPro:IPR027304,NCBI_GP:CAL19174.1;Name=CAL19174.1;Note=Similar to Escherichia coli survival protein SurA SW:SURA_ECOLI (P21202) (428 aa) fasta scores: E(): 0%2C 75.4%25 id in 426 aa%2C and to Vibrio cholerae survival protein SurA TR:Q9KUS0 (EMBL:AE004131) (431 aa) fasta scores: E(): 0%2C45.9%25 id in 436 aa;gbkey=CDS;gene=b0053;inference=similar to sequence:INSDC:AE004131;product=survival protein SurA precursor (peptidyl-prolyl cis-trans isomerase);protein_id=CAL19174.1;transl_table=11
AL590842.1	EMBL	sequence_feature	524914	525216	.	-	.	ID=id1225;Note=Pfam match to entry PF00639 Rotamase%2C PPIC-type PPIASE domain.%2C score 172.80%2C E-value 5.8e-48;gbkey=misc_feature;gene=b0053;inference=protein motif:PF00639
AL590842.1	EMBL	sequence_feature	525103	525126	.	-	.	ID=id1226;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=b0053;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	525244	525549	.	-	.	ID=id1227;Note=Pfam match to entry PF00639 Rotamase%2C PPIC-type PPIASE domain.%2C score 131.80%2C E-value 1.2e-35;gbkey=misc_feature;gene=b0053;inference=protein motif:PF00639
AL590842.1	EMBL	sequence_feature	525364	525426	.	-	.	ID=id1228;Note=PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature.;gbkey=misc_feature;gene=b0053;inference=protein motif:ProSite:PS01096
AL590842.1	EMBL	gene	526127	528469	.	-	.	ID=gene492;Name=b0054;gbkey=Gene;gene=b0054;gene_biotype=protein_coding;gene_synonym=imp,ostA;locus_tag=YPO0495
AL590842.1	EMBL	CDS	526127	528469	.	-	0	ID=cds484;Parent=gene492;Dbxref=GOA:Q8ZIK3,InterPro:IPR005653,InterPro:IPR007543,InterPro:IPR020889,NCBI_GP:CAL19175.1;Name=CAL19175.1;Note=Similar to Escherichia coli organic solvent tolerance protein precursor Imp SW:OSTA_ECOLI (P31554) (784 aa) fasta scores: E(): 0%2C 66.5%25 id in 786 aa%2C and to Haemophilus influenzae organic solvent tolerance protein homolog precursor Imp SW:OSTA_HAEIN (P44846) (782 aa) fasta scores: E(): 0%2C 47.1%25 id in 797 aa;gbkey=CDS;gene=b0054;product=organic solvent tolerance protein precursor;protein_id=CAL19175.1;transl_table=11
AL590842.1	EMBL	sequence_feature	526181	526213	.	-	.	ID=id1229;Note=PS00435 Peroxidases proximal heme-ligand signature.;gbkey=misc_feature;gene=b0054;inference=protein motif:ProSite:PS00435
AL590842.1	EMBL	gene	528654	529487	.	+	.	ID=gene493;Name=b0055;gbkey=Gene;gene=b0055;gene_biotype=protein_coding;gene_synonym=djlA;locus_tag=YPO0496
AL590842.1	EMBL	CDS	528654	529487	.	+	0	ID=cds485;Parent=gene493;Dbxref=GOA:Q74Q30,InterPro:IPR001623,InterPro:IPR007791,InterPro:IPR023749,InterPro:IPR029024,NCBI_GP:CAL19176.1;Name=CAL19176.1;Note=Similar to Escherichia coli DnaJ-like protein DjlA SW:DJLA_ECOLI (P31680) (271 aa) fasta scores: E(): 0%2C 69.7%25 id in 277 aa%2C and to Vibrio cholerae DnaJ-related protein Vc0447 TR:Q9KUR8 (EMBL:AE004132) (284 aa) fasta scores: E(): 0%2C 49.5%25 id in 285 aa;gbkey=CDS;gene=b0055;inference=similar to sequence:INSDC:AE004132;product=DnaJ-like protein;protein_id=CAL19176.1;transl_table=11
AL590842.1	EMBL	sequence_feature	528672	528740	.	+	.	ID=id1230;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=b0055;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	529110	529175	.	+	.	ID=id1231;Note=Predicted helix-turn-helix motif with score 1033 (+2.71 SD) at aa 153-174%2C sequence QVLYVIAEELGISRGQFDQFLR;gbkey=misc_feature;gene=b0055
AL590842.1	EMBL	sequence_feature	529284	529484	.	+	.	ID=id1232;Note=Pfam match to entry PF00226 DnaJ%2C DnaJ domain%2C score 52.50%2C E-value 9e-12;gbkey=misc_feature;gene=b0055;inference=protein motif:PF00226
AL590842.1	EMBL	gene	529785	530405	.	-	.	ID=gene494;Name=rluA;gbkey=Gene;gene=rluA;gene_biotype=protein_coding;locus_tag=YPO0497
AL590842.1	EMBL	CDS	529785	530405	.	-	0	ID=cds486;Parent=gene494;Dbxref=GOA:Q8ZIK1,InterPro:IPR006145,InterPro:IPR006224,InterPro:IPR020103,NCBI_GP:CAL19177.1;Name=CAL19177.1;Note=Similar to Escherichia coli ribosomal large subunit pseudouridine synthase A RluA SW:RLUA_ECOLI (P39219) (218 aa) fasta scores: E(): 0%2C 77.2%25 id in 206 aa%2C and to Haemophilus influenzae ribosomal large subunit pseudouridine synthase A RluA SW:RLUA_HAEIN (P44782) (219 aa) fasta scores: E(): 0%2C 62.3%25 id in 204 aa;gbkey=CDS;gene=rluA;product=ribosomal large subunit pseudouridine synthase A;protein_id=CAL19177.1;transl_table=11
AL590842.1	EMBL	sequence_feature	529935	530375	.	-	.	ID=id1233;Note=Pfam match to entry PF00849 PseudoU_synth_2%2C RNA pseudouridylate synthase%2C score 190.10%2C E-value 3.6e-53;gbkey=misc_feature;gene=rluA;inference=protein motif:PF00849
AL590842.1	EMBL	sequence_feature	530016	530081	.	-	.	ID=id1234;Note=Predicted helix-turn-helix motif with score 1027 (+2.68 SD) at aa 99-120%2C sequence RPKQKVCYETGKSAQTEYQVIS;gbkey=misc_feature;gene=rluA
AL590842.1	EMBL	sequence_feature	530223	530267	.	-	.	ID=id1235;Note=PS01129 Rlu family of pseudouridine synthase signature.;gbkey=misc_feature;gene=rluA;inference=protein motif:ProSite:PS01129
AL590842.1	EMBL	gene	531628	532371	.	-	.	ID=gene495;Name=YPO0498;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0498
AL590842.1	EMBL	CDS	531628	532371	.	-	0	ID=cds487;Parent=gene495;Dbxref=InterPro:IPR018754,UniProtKB/TrEMBL:Q7CG89,NCBI_GP:CAL19178.1;Name=CAL19178.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19178.1;transl_table=11
AL590842.1	EMBL	gene	532701	533714	.	+	.	ID=gene496;Name=YPO0499;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0499
AL590842.1	EMBL	CDS	532701	533714	.	+	0	ID=cds488;Parent=gene496;Dbxref=InterPro:IPR010657,UniProtKB/TrEMBL:Q7CG90,NCBI_GP:CAL19179.1;Name=CAL19179.1;Note=Weakly similar to Pseudomonas aeruginosa hypothetical protein PA0082 TR:AAG03472 (EMBL:AE004447) (344 aa) fasta scores: E(): 0.00022%2C 22.9%25 id in 341 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004447;product=hypothetical protein;protein_id=CAL19179.1;transl_table=11
AL590842.1	EMBL	gene	533725	534285	.	+	.	ID=gene497;Name=YPO0500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0500
AL590842.1	EMBL	CDS	533725	534285	.	+	0	ID=cds489;Parent=gene497;Dbxref=InterPro:IPR008312,UniProtKB/TrEMBL:Q7CG91,NCBI_GP:CAL19180.1;Name=CAL19180.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA0083 TR:AAG03473 (EMBL:AE004447) (172 aa) fasta scores: E(): 0%2C 59.9%25 id in 162 aa%2C and to Edwardsiella ictaluri putative protein EIP20 TR:O52407 (EMBL:AF037441) (170 aa) fasta scores: E(): 2.1e-20%2C 41.1%25 id in 163 aa. Similar to YPO2939 (59.3%25 identity in 162 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AF037441;product=conserved hypothetical protein;protein_id=CAL19180.1;transl_table=11
AL590842.1	EMBL	gene	534285	535796	.	+	.	ID=gene498;Name=YPO0501;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0501
AL590842.1	EMBL	CDS	534285	535796	.	+	0	ID=cds490;Parent=gene498;Dbxref=InterPro:IPR010269,UniProtKB/TrEMBL:Q7CG92,NCBI_GP:CAL19181.1;Name=CAL19181.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA0084 TR:AAG03474 (EMBL:AE004447) (498 aa) fasta scores: E(): 0%2C 63.9%25 id in 479 aa%2C and to Edwardsiella ictaluri hypothetical protein EIP55 TR:O52406 (EMBL:AF037441) (495 aa) fasta scores: E(): 0%2C 46.6%25 id in 494 aa. Similar to YPO2938 (61.4%25 identity in 479 aa overlap).;gbkey=CDS;inference=similar to sequence:INSDC:AF037441;product=conserved hypothetical protein;protein_id=CAL19181.1;transl_table=11
AL590842.1	EMBL	gene	535959	536477	.	+	.	ID=gene499;Name=YPO0502;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0502
AL590842.1	EMBL	CDS	535959	536477	.	+	0	ID=cds491;Parent=gene499;Dbxref=InterPro:IPR008514,UniProtKB/TrEMBL:Q7CG93,NCBI_GP:CAL19182.1;Name=CAL19182.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA0085 TR:AAG03475 (EMBL:AE004447) (162 aa) fasta scores: E(): 1.5e-15%2C 38.9%25 id in 167 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004447;product=conserved hypothetical protein;protein_id=CAL19182.1;transl_table=11
AL590842.1	EMBL	gene	536551	536994	.	+	.	ID=gene500;Name=YPO0503;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0503
AL590842.1	EMBL	CDS	536551	536994	.	+	0	ID=cds492;Parent=gene500;Dbxref=InterPro:IPR007048,UniProtKB/TrEMBL:Q7CG94,NCBI_GP:CAL19183.1;Name=CAL19183.1;Note=Similar to Edwardsiella ictaluri hypothetical protein eip19 TR:O52404 (EMBL:AF037441) (158 aa) fasta scores: E(): 9.1e-07%2C 33.6%25 id in 128 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0087 TR:AAG03477 (EMBL:AE004447) (169 aa) fasta scores: E(): 0.0041%2C 29.9%25 id in 127 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF037441;product=conserved hypothetical protein;protein_id=CAL19183.1;transl_table=11
AL590842.1	EMBL	gene	537027	538871	.	+	.	ID=gene501;Name=YPO0504;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0504
AL590842.1	EMBL	CDS	537027	538871	.	+	0	ID=cds493;Parent=gene501;Dbxref=InterPro:IPR010272,UniProtKB/TrEMBL:Q7CG95,NCBI_GP:CAL19184.1;Name=CAL19184.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA0088 TR:AAG03478 (EMBL:AE004447) (619 aa) fasta scores: E(): 0%2C 29.0%25 id in 617 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004447;product=conserved hypothetical protein;protein_id=CAL19184.1;transl_table=11
AL590842.1	EMBL	gene	538864	539847	.	+	.	ID=gene502;Name=YPO0505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0505
AL590842.1	EMBL	CDS	538864	539847	.	+	0	ID=cds494;Parent=gene502;Dbxref=InterPro:IPR010732,UniProtKB/TrEMBL:Q0WJG0,NCBI_GP:CAL19185.1;Name=CAL19185.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA0089 TR:AAG03479 (EMBL:AE004447) (348 aa) fasta scores: E(): 1.2e-22%2C 28.8%25 id in 316 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA2370 TR:AAG05758 (EMBL:AE004663) (338 aa) fasta scores: E(): 3.1e-11%2C 27.6%25 id in 301 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004663;product=conserved hypothetical protein;protein_id=CAL19185.1;transl_table=11
AL590842.1	EMBL	gene	539850	542453	.	+	.	ID=gene503;Name=clpB;gbkey=Gene;gene=clpB;gene_biotype=protein_coding;gene_synonym=htpM;locus_tag=YPO0506
AL590842.1	EMBL	CDS	539850	542453	.	+	0	ID=cds495;Parent=gene503;Dbxref=GOA:Q7CG96,InterPro:IPR001270,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR004176,InterPro:IPR017729,InterPro:IPR019489,InterPro:IPR023150,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CG96,NCBI_GP:CAL19186.1;Name=CAL19186.1;Note=Similar to Escherichia coli ClpB protein%2C which is thought to form part of a multi-chaperone system supressing protein aggregation%2C SW:CLPB_ECOLI (P03815) (857 aa) fasta scores: E(): 0%2C 35.1%25 identity in 883 aa overlap. Also similar to Yersinia enterocolitica Clp protease-associated protein ClpB TR:AAG00524 (EMBL:AF285784) (890 aa) fasta scores: E(): 0%2C 44.2%25 id in 866 aa. Contains small internal deletions relative to orthologues.;gbkey=CDS;gene=clpB;inference=similar to sequence:INSDC:AF285784;product=putative Clp ATPase;protein_id=CAL19186.1;transl_table=11
AL590842.1	EMBL	sequence_feature	540534	541109	.	+	.	ID=id1236;Note=Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA)%2C score 41.10%2CE-value 2.4e-08;gbkey=misc_feature;gene=clpB;inference=protein motif:PF00004
AL590842.1	EMBL	sequence_feature	540549	540572	.	+	.	ID=id1237;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=clpB;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	541674	541697	.	+	.	ID=id1238;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=clpB;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	542557	544905	.	+	.	ID=gene504;Name=YPO0507;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0507
AL590842.1	EMBL	CDS	542557	544905	.	+	0	ID=cds496;Parent=gene504;Dbxref=InterPro:IPR006531,InterPro:IPR006533,InterPro:IPR017847,UniProtKB/TrEMBL:Q7CG97,NCBI_GP:CAL19187.1;Name=CAL19187.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA0095 TR:AAG03485 (EMBL:AE004448) (741 aa) fasta scores: E(): 0%2C 31.5%25 id in 728 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0091 TR:AAG03481 (EMBL:AE004447) (643 aa) fasta scores: E(): 0%2C 32.7%25 id in 646 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004448;product=conserved hypothetical protein;protein_id=CAL19187.1;transl_table=11
AL590842.1	EMBL	gene	544918	545490	.	+	.	ID=gene505;Name=YPO0508;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0508
AL590842.1	EMBL	CDS	544918	545490	.	+	0	ID=cds497;Parent=gene505;Dbxref=InterPro:IPR018683,UniProtKB/TrEMBL:Q0WJF7,NCBI_GP:CAL19188.1;Name=CAL19188.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19188.1;transl_table=11
AL590842.1	EMBL	gene	545515	547137	.	+	.	ID=gene506;Name=YPO0509;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0509
AL590842.1	EMBL	CDS	545515	547137	.	+	0	ID=cds498;Parent=gene506;Dbxref=InterPro:IPR001646,InterPro:IPR012334,InterPro:IPR018683,UniProtKB/TrEMBL:Q0WJF6,NCBI_GP:CAL19189.1;Name=CAL19189.1;Note=Internal region weakly similar to Rickettsia prowazekii hypothetical protein RP563 TR:Q9ZCY8 (EMBL:AJ235272) (588 aa) fasta scores: E(): 0.00013%2C 21.8%25 id in 316 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ235272;product=hypothetical protein;protein_id=CAL19189.1;transl_table=11
AL590842.1	EMBL	sequence_feature	546931	547050	.	+	.	ID=id1239;Note=Pfam match to entry PF00805 Pentapeptide%2CPentapeptide repeats (8 copies)%2C score 24.40%2C E-value 0.0026;gbkey=misc_feature;inference=protein motif:PF00805
AL590842.1	EMBL	gene	547163	548266	.	+	.	ID=gene507;Name=YPO0510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0510
AL590842.1	EMBL	CDS	547163	548266	.	+	0	ID=cds499;Parent=gene507;Dbxref=InterPro:IPR001646,InterPro:IPR012334,UniProtKB/TrEMBL:Q7CG98,NCBI_GP:CAL19190.1;Name=CAL19190.1;Note=No significant database hits to the full length CDS. Similar to the internal regions of Synechocystis sp hypothetical protein SLR1819 SW:YI19_SYNY3 (P73709) (331 aa) fasta scores: E(): 4.5e-08%2C 24.1%25 id in 266 aa%2C and to Arabidopsis thaliana FH protein interacting protein FIP2 TR:Q9SE95 (EMBL:AF174429) (298 aa) fasta scores: E(): 1e-07%2C 29.7%25 id in 155 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF174429;product=hypothetical protein;protein_id=CAL19190.1;transl_table=11
AL590842.1	EMBL	sequence_feature	547850	547969	.	+	.	ID=id1240;Note=Pfam match to entry PF00805 Pentapeptide%2CPentapeptide repeats (8 copies)%2C score 21.70%2C E-value 0.017;gbkey=misc_feature;inference=protein motif:PF00805
AL590842.1	EMBL	sequence_feature	548000	548119	.	+	.	ID=id1241;Note=Pfam match to entry PF00805 Pentapeptide%2CPentapeptide repeats (8 copies)%2C score 28.90%2C E-value 0.00012;gbkey=misc_feature;inference=protein motif:PF00805
AL590842.1	EMBL	gene	548259	548876	.	+	.	ID=gene508;Name=YPO0511;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0511
AL590842.1	EMBL	CDS	548259	548876	.	+	0	ID=cds500;Parent=gene508;Dbxref=InterPro:IPR021927,UniProtKB/TrEMBL:Q7CG99,NCBI_GP:CAL19191.1;Name=CAL19191.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19191.1;transl_table=11
AL590842.1	EMBL	gene	548882	549247	.	+	.	ID=gene509;Name=YPO0511a;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0511a
AL590842.1	EMBL	CDS	548882	549247	.	+	0	ID=cds501;Parent=gene509;Dbxref=InterPro:IPR025425,UniProtKB/TrEMBL:Q7CGA0,NCBI_GP:CAL19192.1;Name=CAL19192.1;Note=No significant database hits to the full length CDS. Weakly similar to internal regions of Tetrahymena vorax SUBTRN TR:O00946 (EMBL:AF003090) (258 aa) fasta scores: E(): 3%2C 28.4%25 id in 116 aa%2C and to Xenopus laevis maternal transcription factor OCT-1 TR:Q91809 (EMBL:X57165) (758 aa) fasta scores: E(): 6.1%2C 24.8%25 id in 125 aa;gbkey=CDS;inference=similar to sequence:INSDC:X57165;product=hypothetical protein;protein_id=CAL19192.1;transl_table=11
AL590842.1	EMBL	gene	549240	549731	.	+	.	ID=gene510;Name=YPO0512;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0512
AL590842.1	EMBL	CDS	549240	549731	.	+	0	ID=cds502;Parent=gene510;Dbxref=InterPro:IPR017734,UniProtKB/TrEMBL:Q74Q45,NCBI_GP:CAL19193.1;Name=CAL19193.1;Note=Similar to N-terminal regions of Pseudomonas aureofaciens copper-containing nitrite reductase precursor NirK SW:NIR_PSEAR (Q06006) (363 aa) fasta scores: E(): 5.2%2C25.8%25 id in 155 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0080 TR:AAG03470 (EMBL:AE004447) (154 aa) fasta scores: E(): 0.0001%2C 30.8%25 id in 120 aa. Putative N-terminal lipoprotein attachment site.;gbkey=CDS;inference=similar to sequence:INSDC:AE004447;product=putative lipoprotein;protein_id=CAL19193.1;transl_table=11
AL590842.1	EMBL	sequence_feature	549252	549320	.	+	.	ID=id1242;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	549273	549305	.	+	.	ID=id1243;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	549851	551206	.	+	.	ID=gene511;Name=YPO0513;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0513
AL590842.1	EMBL	CDS	549851	551206	.	+	0	ID=cds503;Parent=gene511;Dbxref=InterPro:IPR010263,UniProtKB/TrEMBL:Q0WJF1,NCBI_GP:CAL19194.1;Name=CAL19194.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA0079 TR:AAG03469 (EMBL:AE004447) (444 aa) fasta scores: E(): 0%2C 35.3%25 id in 445 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA1667 TR:AAG05056 (EMBL:AE004594) (443 aa) fasta scores: E(): 0%2C 32.0%25 id in 450 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004594;product=conserved hypothetical protein;protein_id=CAL19194.1;transl_table=11
AL590842.1	EMBL	gene	551203	552813	.	+	.	ID=gene512;Name=YPO0514;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0514
AL590842.1	EMBL	CDS	551203	552813	.	+	0	ID=cds504;Parent=gene512;Dbxref=InterPro:IPR006665,InterPro:IPR017732,UniProtKB/TrEMBL:Q0WJF0,NCBI_GP:CAL19195.1;Name=CAL19195.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA0078 TR:AAG03468 (EMBL:AE004447) (449 aa) fasta scores: E(): 4.5e-09%2C 28.2%25 id in 457 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004447;product=putative OmpA-family membrane protein;protein_id=CAL19195.1;transl_table=11
AL590842.1	EMBL	sequence_feature	552148	552216	.	+	.	ID=id1244;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	552391	552705	.	+	.	ID=id1245;Note=Pfam match to entry PF00691 OmpA%2C OmpA family%2C score 65.30%2C E-value 1.3e-15;gbkey=misc_feature;inference=protein motif:PF00691
AL590842.1	EMBL	gene	552863	556315	.	+	.	ID=gene513;Name=YPO0515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0515
AL590842.1	EMBL	CDS	552863	556315	.	+	0	ID=cds505;Parent=gene513;Dbxref=InterPro:IPR009612,InterPro:IPR010623,InterPro:IPR017731,InterPro:IPR025743,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WJE9,NCBI_GP:CAL19196.1;Name=CAL19196.1;Note=Similar to Legionella pneumophila IcmF protein TR:O54529 (EMBL:Y15044) (973 aa) fasta scores: E(): 8.3e-11%2C 21.0%25 id in 1008 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0077 TR:AAG03467 (EMBL:AE004446) (1101 aa) fasta scores: E(): 0%2C 25.5%25 id in 1114 aa. In Legionella pneumophila%2C mutations in icmF resulted in a reduction in conjugation frequency.;gbkey=CDS;inference=similar to sequence:INSDC:Y15044;product=putative membrane protein;protein_id=CAL19196.1;transl_table=11
AL590842.1	EMBL	sequence_feature	552941	553009	.	+	.	ID=id1246;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	553202	553225	.	+	.	ID=id1247;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	554120	554179	.	+	.	ID=id1248;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	556337	556690	.	+	.	ID=gene514;Name=YPO0516;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0516
AL590842.1	EMBL	CDS	556337	556690	.	+	0	ID=cds506;Parent=gene514;Dbxref=UniProtKB/TrEMBL:Q0WJE8,NCBI_GP:CAL19197.1;Name=CAL19197.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19197.1;transl_table=11
AL590842.1	EMBL	gene	556946	559852	.	-	.	ID=gene515;Name=hepA;gbkey=Gene;gene=hepA;gene_biotype=protein_coding;gene_synonym=rapA;locus_tag=YPO0517
AL590842.1	EMBL	CDS	556946	559852	.	-	0	ID=cds507;Parent=gene515;Dbxref=GOA:Q8ZII0,InterPro:IPR000330,InterPro:IPR001650,InterPro:IPR014001,InterPro:IPR022737,InterPro:IPR023949,InterPro:IPR027417,NCBI_GP:CAL19198.1;Name=CAL19198.1;Note=Similar to Escherichia coli RNA polymerase associated protein (ATP-dependent helicase) RapA SW:HEPA_ECOLI (P23852) (967 aa) fasta scores: E(): 0%2C 79.6%25 id in 967 aa%2C and to Vibrio cholerae RNA polymerase-associated protein HepA VC2506 TR:Q9KP70 (EMBL:AE004320) (969 aa) fasta scores: E(): 0%2C 63.6%25 id in 969 aa;gbkey=CDS;gene=hepA;inference=similar to sequence:INSDC:AE004320;product=RNA polymerase associated helicase;protein_id=CAL19198.1;transl_table=11
AL590842.1	EMBL	sequence_feature	558050	558304	.	-	.	ID=id1249;Note=Pfam match to entry PF00271 helicase_C%2C Helicases conserved C-terminal domain%2C score 86.80%2C E-value 4.5e-22;gbkey=misc_feature;gene=hepA;inference=protein motif:PF00271
AL590842.1	EMBL	sequence_feature	558491	559384	.	-	.	ID=id1250;Note=Pfam match to entry PF00176 SNF2_N%2C SNF2 and others N-terminal domain%2C score 223.40%2C E-value 3.2e-63;gbkey=misc_feature;gene=hepA;inference=protein motif:PF00176
AL590842.1	EMBL	gene	560313	562682	.	-	.	ID=gene516;Name=dinA;gbkey=Gene;gene=dinA;gene_biotype=protein_coding;gene_synonym=polB;locus_tag=YPO0518
AL590842.1	EMBL	CDS	560313	562682	.	-	0	ID=cds508;Parent=gene516;Dbxref=GOA:Q7CGA1,InterPro:IPR006133,InterPro:IPR006134,InterPro:IPR006172,InterPro:IPR012337,InterPro:IPR017964,InterPro:IPR023211,UniProtKB/TrEMBL:Q7CGA1,NCBI_GP:CAL19199.1;Name=CAL19199.1;Note=Similar to Escherichia coli DNA damage-inducible DNA polymerase II PolB SW:DPO2_ECOLI (P21189) (782 aa) fasta scores: E(): 0%2C 72.4%25 id in 783 aa%2C and to Pseudomonas aeruginosa DNA polymerase II PolB TR:AAG05275 (EMBL:AE004614) (787 aa) fasta scores: E(): 0%2C 74.4%25 id in 785 aa;gbkey=CDS;gene=dinA;inference=similar to sequence:INSDC:AE004614;product=DNA polymerase II;protein_id=CAL19199.1;transl_table=11
AL590842.1	EMBL	sequence_feature	560352	562241	.	-	.	ID=id1251;Note=Pfam match to entry PF00136 DNA_pol_B%2C DNA polymerase family B%2C score 500.10%2C E-value 1.2e-148;gbkey=misc_feature;gene=dinA;inference=protein motif:PF00136
AL590842.1	EMBL	sequence_feature	561015	561041	.	-	.	ID=id1252;Note=PS00116 DNA polymerase family B signature.;gbkey=misc_feature;gene=dinA;inference=protein motif:ProSite:PS00116
AL590842.1	EMBL	sequence_feature	562302	562379	.	-	.	ID=id1253;Note=Pfam match to entry PF00136 DNA_pol_B%2C DNA polymerase family B%2C score 5.00%2C E-value 0.52;gbkey=misc_feature;gene=dinA;inference=protein motif:PF00136
AL590842.1	EMBL	gene	562878	563645	.	+	.	ID=gene517;Name=YPO0519;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0519
AL590842.1	EMBL	CDS	562878	563645	.	+	0	ID=cds509;Parent=gene517;Dbxref=InterPro:IPR015414,UniProtKB/TrEMBL:Q7CGA2,NCBI_GP:CAL19200.1;Name=CAL19200.1;Note=Similar to Escherichia coli hypothetical protein YabI SW:YABI_ECOLI (P30149) (254 aa) fasta scores: E(): 0%2C58.5%25 id in 253 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) hypothetical protein BU139 TR:BAB12857 (EMBL:AP001118) (256 aa) fasta scores: E(): 0%2C 50.2%25 id in 255 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001118;product=putative DedA-family membrane protein;protein_id=CAL19200.1;transl_table=11
AL590842.1	EMBL	sequence_feature	562887	562955	.	+	.	ID=id1254;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	562929	563414	.	+	.	ID=id1255;Note=Pfam match to entry PF00597 DedA%2C DedA family%2C score 159.10%2C E-value 7.5e-44;gbkey=misc_feature;inference=protein motif:PF00597
AL590842.1	EMBL	sequence_feature	562962	563030	.	+	.	ID=id1256;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	563043	563111	.	+	.	ID=id1257;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	563301	563369	.	+	.	ID=id1258;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	563397	563465	.	+	.	ID=id1259;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	563523	563591	.	+	.	ID=id1260;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	563714	564397	.	-	.	ID=gene518;Name=thiQ;gbkey=Gene;gene=thiQ;gene_biotype=protein_coding;locus_tag=YPO0520
AL590842.1	EMBL	CDS	563714	564397	.	-	0	ID=cds510;Parent=gene518;Dbxref=GOA:Q0WJE4,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR005968,InterPro:IPR017871,InterPro:IPR027417,NCBI_GP:CAL19201.1;Name=CAL19201.1;Note=Similar to Escherichia coli thiamine ABC transporter%2C ATP-binding protein ThiQ SW:THIQ_ECOLI (P31548) (232 aa) fasta scores: E(): 0%2C 62.9%25 id in 221 aa%2Cand to Vibrio cholerae putative thiamine ABC transporter%2CATP-binding protein VC2537 TR:Q9KP42 (EMBL:AE004323) (244 aa) fasta scores: E(): 0%2C 58.0%25 id in 207 aa;gbkey=CDS;gene=thiQ;inference=similar to sequence:INSDC:AE004323;product=thiamine transport ATP-binding protein;protein_id=CAL19201.1;transl_table=11
AL590842.1	EMBL	sequence_feature	563807	564352	.	-	.	ID=id1261;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 217.10%2C E-value 2.6e-61;gbkey=misc_feature;gene=thiQ;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	563993	564037	.	-	.	ID=id1262;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=thiQ;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	564308	564331	.	-	.	ID=id1263;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=thiQ;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	564411	565970	.	-	.	ID=gene519;Name=thiP;gbkey=Gene;gene=thiP;gene_biotype=protein_coding;locus_tag=YPO0521
AL590842.1	EMBL	CDS	564411	565970	.	-	0	ID=cds511;Parent=gene519;Dbxref=GOA:Q0WJE3,InterPro:IPR000515,InterPro:IPR005947,UniProtKB/TrEMBL:Q0WJE3,NCBI_GP:CAL19202.1;Name=CAL19202.1;Note=Similar to Escherichia coli thiamine ABC transporter%2C permease protein ThiP SW:THIP_ECOLI (P31549) (536 aa) fasta scores: E(): 0%2C 74.0%25 id in 516 aa%2C and to Vibrio cholerae putative thiamine ABC transporter%2C permease protein VC2538 TR:Q9KP41 (EMBL:AE004323) (530 aa) fasta scores: E(): 0%2C 46.5%25 id in 512 aa;gbkey=CDS;gene=thiP;inference=similar to sequence:INSDC:AE004323;product=thiamine transport system permease protein;protein_id=CAL19202.1;transl_table=11
AL590842.1	EMBL	sequence_feature	564444	564494	.	-	.	ID=id1264;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=thiP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	564567	564632	.	-	.	ID=id1265;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=thiP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	564747	564803	.	-	.	ID=id1266;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=thiP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	564834	564899	.	-	.	ID=id1267;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=thiP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	564960	565025	.	-	.	ID=id1268;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=thiP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	565086	565151	.	-	.	ID=id1269;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=thiP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	565239	565304	.	-	.	ID=id1270;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=thiP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	565314	565538	.	-	.	ID=id1271;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 21.80%2C E-value 0.016;gbkey=misc_feature;gene=thiP;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	565365	565430	.	-	.	ID=id1272;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=thiP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	565542	565607	.	-	.	ID=id1273;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=thiP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	565668	565733	.	-	.	ID=id1274;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=thiP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	565773	565838	.	-	.	ID=id1275;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=thiP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	565899	565964	.	-	.	ID=id1276;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=thiP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	565994	566986	.	-	.	ID=gene520;Name=tbpA;gbkey=Gene;gene=tbpA;gene_biotype=protein_coding;locus_tag=YPO0522
AL590842.1	EMBL	CDS	565994	566986	.	-	0	ID=cds512;Parent=gene520;Dbxref=GOA:Q74Q54,InterPro:IPR005948,InterPro:IPR005967,UniProtKB/TrEMBL:Q74Q54,NCBI_GP:CAL19203.1;Name=CAL19203.1;Note=Similar to Escherichia coli thiamine ABC transpoter%2Cperiplasmic binding protein protein TbpA SW:TBPA_ECOLI (P31550) (327 aa) fasta scores: E(): 0%2C 72.4%25 id in 323 aa%2Cand to Vibrio cholerae thiamine ABC transporter%2Cperiplasmic thiamin-binding protein VC2539 TR:Q9KP40 (EMBL:AE004323) (330 aa) fasta scores: E(): 0%2C 68.0%25 id in 319 aa;gbkey=CDS;gene=tbpA;inference=similar to sequence:INSDC:AE004323;product=thiamine-binding periplasmic protein;protein_id=CAL19203.1;transl_table=11
AL590842.1	EMBL	gene	567541	567825	.	+	.	ID=gene521;Name=YPO0523;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0523
AL590842.1	EMBL	CDS	567541	567825	.	+	0	ID=cds513;Parent=gene521;Dbxref=UniProtKB/TrEMBL:Q74Q55,NCBI_GP:CAL19204.1;Name=CAL19204.1;Note=Poor database matches%2C similar to the internal region of Caenorhabditis elegans C33a12.10 protein TR:Q18364 (EMBL:Z68493) (339 aa) fasta scores: E(): 1.1%2C31.4%25 id in 105 aa. CDS DNA has a low GC content%2C 26.31%25. Possible horizontal gene transfer.;gbkey=CDS;inference=similar to sequence:INSDC:Z68493;product=putative membrane protein;protein_id=CAL19204.1;transl_table=11
AL590842.1	EMBL	sequence_feature	567550	567618	.	+	.	ID=id1277;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	567637	567696	.	+	.	ID=id1278;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	567739	567798	.	+	.	ID=id1279;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	567926	569587	.	-	.	ID=gene522;Name=YPO0524;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0524
AL590842.1	EMBL	CDS	567926	569587	.	-	0	ID=cds514;Parent=gene522;Dbxref=GOA:Q74Q56,InterPro:IPR000914,InterPro:IPR023767,InterPro:IPR025370,NCBI_GP:CAL19205.1;Name=CAL19205.1;Note=Similar to Escherichia coli hypothetical protein YabN SW:YABN_ECOLI (P33595) (551 aa) fasta scores: E(): 0%2C62.5%25 id in 552 aa%2C and to Vibrio cholerae hypothetical protein VCA0578 TR:Q9KM11 (EMBL:AE004388) (565 aa) fasta scores: E(): 0%2C 36.1%25 id in 565 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004388;product=conserved hypothetical protein;protein_id=CAL19205.1;transl_table=11
AL590842.1	EMBL	sequence_feature	569453	569518	.	-	.	ID=id1280;Note=Predicted helix-turn-helix motif with score 1566 (+4.52 SD) at aa 24-45%2C sequence TTLQALAEVLNCSRRHVRSLLG;gbkey=misc_feature
AL590842.1	EMBL	gene	569825	569998	.	+	.	ID=gene523;Name=YPO0525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0525
AL590842.1	EMBL	CDS	569825	569998	.	+	0	ID=cds515;Parent=gene523;Dbxref=UniProtKB/TrEMBL:Q74Q57,NCBI_GP:CAL19206.1;Name=CAL19206.1;Note=Doubtful CDS with no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19206.1;transl_table=11
AL590842.1	EMBL	pseudogene	570251	571182	.	+	.	ID=gene524;Name=setA;gbkey=Gene;gene=setA;gene_biotype=pseudogene;gene_synonym=sotA;is_ordered=true;locus_tag=YPO0526;part=1/2;pseudo=true
AL590842.1	EMBL	pseudogene	573139	573391	.	+	.	ID=gene524;Name=setA;gbkey=Gene;gene=setA;gene_biotype=pseudogene;gene_synonym=sotA;is_ordered=true;locus_tag=YPO0526;part=2/2;pseudo=true
AL590842.1	EMBL	CDS	570251	571182	.	+	0	ID=cds516;Parent=gene524;Dbxref=PSEUDO:CAL19207.1;Note=Similar to Escherichia coli sugar efflux transporter SetA SW:SETA_ECOLI (P31675) (392 aa) fasta scores: E(): 0%2C70.5%25 id in 386 aa%2C and to Erwinia chrysanthemi sugar efflux transporter SotA SW:SOTA_ERWCH (Q9S3K0) (393 aa) fasta scores: E(): 0%2C 54.2%25 id in 393 aa. CDS disrupted by IS100 element at codon 311;gbkey=CDS;gene=setA;inference=protein motif:TMHMM:2.0;product=sugar efflux transporter (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	CDS	573139	573391	.	+	1	ID=cds516;Parent=gene524;Dbxref=PSEUDO:CAL19207.1;Note=Similar to Escherichia coli sugar efflux transporter SetA SW:SETA_ECOLI (P31675) (392 aa) fasta scores: E(): 0%2C70.5%25 id in 386 aa%2C and to Erwinia chrysanthemi sugar efflux transporter SotA SW:SOTA_ERWCH (Q9S3K0) (393 aa) fasta scores: E(): 0%2C 54.2%25 id in 393 aa. CDS disrupted by IS100 element at codon 311;gbkey=CDS;gene=setA;inference=protein motif:TMHMM:2.0;product=sugar efflux transporter (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	570287	570355	.	+	.	ID=id1281;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=setA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	570398	570457	.	+	.	ID=id1282;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=setA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	570494	570547	.	+	.	ID=id1283;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=setA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	570560	570628	.	+	.	ID=id1284;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=setA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	570665	570718	.	+	.	ID=id1285;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=setA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	570761	570829	.	+	.	ID=id1286;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=setA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	570899	570967	.	+	.	ID=id1287;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=setA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	571010	571078	.	+	.	ID=id1288;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=setA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	571097	571156	.	+	.	ID=id1289;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=setA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	repeat_region	571185	573138	.	-	.	ID=id1290;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	571185	571212	.	+	.	ID=id1291;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	571251	572033	.	-	.	ID=gene525;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO0527
AL590842.1	EMBL	CDS	571251	572033	.	-	0	ID=cds517;Parent=gene525;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL19208.1;Name=CAL19208.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL19208.1;transl_table=11
AL590842.1	EMBL	sequence_feature	571326	571865	.	-	.	ID=id1292;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	571683	571706	.	-	.	ID=id1293;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	572030	573052	.	-	.	ID=gene526;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO0528
AL590842.1	EMBL	CDS	572030	573052	.	-	0	ID=cds518;Parent=gene526;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL19209.1;Name=CAL19209.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL19209.1;transl_table=11
AL590842.1	EMBL	sequence_feature	572174	572707	.	-	.	ID=id1294;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	sequence_feature	572936	573001	.	-	.	ID=id1295;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	572945	573028	.	-	.	ID=id1296;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	INVERTED	573111	573138	.	-	.	ID=id1297;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	573140	573199	.	+	.	ID=gene527;Name=YPO0529;gbkey=Gene;gene_biotype=other;locus_tag=YPO0529
AL590842.1	EMBL	sequence_feature	573140	573199	.	+	.	ID=id1298;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	573227	573286	.	+	.	ID=id1299;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	573305	573373	.	+	.	ID=id1300;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	573227	573286	.	+	.	ID=gene528;Name=YPO0529;gbkey=Gene;gene_biotype=other;locus_tag=YPO0529
AL590842.1	EMBL	gene	573305	573373	.	+	.	ID=gene529;Name=YPO0529;gbkey=Gene;gene_biotype=other;locus_tag=YPO0529
AL590842.1	EMBL	gene	573632	574234	.	-	.	ID=gene530;Name=leuD;gbkey=Gene;gene=leuD;gene_biotype=protein_coding;locus_tag=YPO0530
AL590842.1	EMBL	CDS	573632	574234	.	-	0	ID=cds519;Parent=gene530;Dbxref=GOA:Q8ZIH1,InterPro:IPR000573,InterPro:IPR004431,InterPro:IPR015928,InterPro:IPR015937,NCBI_GP:CAL19210.1;Name=CAL19210.1;Note=Similar to Salmonella typhimurium 3-isopropylmalate dehydratase small subunit LeuD SW:LEUD_SALTY (P04787) (201 aa) fasta scores: E(): 0%2C 80.3%25 id in 198 aa%2C and to Escherichia coli 3-isopropylmalate dehydratase small subunit LeuD SW:LEUD_ECOLI (P30126) (201 aa) fasta scores: E(): 0%2C 79.7%25 id in 197 aa;gbkey=CDS;gene=leuD;product=3-isopropylmalate dehydratase small subunit;protein_id=CAL19210.1;transl_table=11
AL590842.1	EMBL	sequence_feature	573725	574234	.	-	.	ID=id1301;Note=Pfam match to entry PF00694 Aconitase_C%2C Aconitase C-terminal domain%2C score 295.60%2C E-value 6.3e-85;gbkey=misc_feature;gene=leuD;inference=protein motif:PF00694
AL590842.1	EMBL	gene	574249	575679	.	-	.	ID=gene531;Name=leuC;gbkey=Gene;gene=leuC;gene_biotype=protein_coding;locus_tag=YPO0531
AL590842.1	EMBL	CDS	574249	575679	.	-	0	ID=cds520;Parent=gene531;Dbxref=GOA:Q8ZIH0,InterPro:IPR001030,InterPro:IPR004430,InterPro:IPR015931,InterPro:IPR015932,InterPro:IPR015937,InterPro:IPR018136,NCBI_GP:CAL19211.1;Name=CAL19211.1;Note=Similar to Escherichia coli 3-isopropylmalate dehydratase large subunit LeuC SW:LEU2_ECOLI (P30127) (465 aa) fasta scores: E(): 0%2C 85.8%25 id in 464 aa%2C and to Salmonella typhimurium 3-isopropylmalate dehydratase large subunit LeuC SW:LEU2_SALTY (P15717) (464 aa) fasta scores: E(): 0%2C 84.1%25 id in 464 aa;gbkey=CDS;gene=leuC;product=3-isopropylmalate dehydratase large subunit;protein_id=CAL19211.1;transl_table=11
AL590842.1	EMBL	sequence_feature	574291	575652	.	-	.	ID=id1302;Note=Pfam match to entry PF00330 aconitase%2C Aconitase family (aconitate hydratase)%2C score 903.90%2C E-value 1.1e-275;gbkey=misc_feature;gene=leuC;inference=protein motif:PF00330
AL590842.1	EMBL	sequence_feature	574426	574467	.	-	.	ID=id1303;Note=PS01244 Aconitase family signature 2.;gbkey=misc_feature;gene=leuC;inference=protein motif:ProSite:PS01244
AL590842.1	EMBL	sequence_feature	574597	574647	.	-	.	ID=id1304;Note=PS00450 Aconitase family signature 1.;gbkey=misc_feature;gene=leuC;inference=protein motif:ProSite:PS00450
AL590842.1	EMBL	gene	575681	576778	.	-	.	ID=gene532;Name=leuB;gbkey=Gene;gene=leuB;gene_biotype=protein_coding;locus_tag=YPO0532
AL590842.1	EMBL	CDS	575681	576778	.	-	0	ID=cds521;Parent=gene532;Dbxref=GOA:Q8ZIG9,InterPro:IPR001804,InterPro:IPR004429,InterPro:IPR019818,InterPro:IPR024084,NCBI_GP:CAL19212.1;Name=CAL19212.1;Note=Similar to Escherichia coli 3-isopropylmalate dehydrogenase LeuB SW:LEU3_ECOLI (P30125) (362 aa) fasta scores: E(): 0%2C 85.9%25 id in 362 aa%2C and to Salmonella typhimurium 3-isopropylmalate dehydrogenase LeuB SW:LEU3_SALTY (P37412) (363 aa) fasta scores: E(): 0%2C 84.8%25 id in 363 aa;gbkey=CDS;gene=leuB;product=3-isopropylmalate dehydrogenase;protein_id=CAL19212.1;transl_table=11
AL590842.1	EMBL	sequence_feature	575708	576757	.	-	.	ID=id1305;Note=Pfam match to entry PF00180 isodh%2C Isocitrate and isopropylmalate dehydrogenases%2C score 718.40%2C E-value 8e-214;gbkey=misc_feature;gene=leuB;inference=protein motif:PF00180
AL590842.1	EMBL	sequence_feature	575975	576034	.	-	.	ID=id1306;Note=PS00470 Isocitrate and isopropylmalate dehydrogenases signature.;gbkey=misc_feature;gene=leuB;inference=protein motif:ProSite:PS00470
AL590842.1	EMBL	gene	576775	578337	.	-	.	ID=gene533;Name=leuA;gbkey=Gene;gene=leuA;gene_biotype=protein_coding;locus_tag=YPO0533
AL590842.1	EMBL	CDS	576775	578337	.	-	0	ID=cds522;Parent=gene533;Dbxref=GOA:Q8ZIG8,InterPro:IPR000891,InterPro:IPR002034,InterPro:IPR005671,InterPro:IPR013709,InterPro:IPR013785,NCBI_GP:CAL19213.1;Name=CAL19213.1;Note=Similar to Escherichia coli 2-isopropylmalate synthase LeuA SW:LEU1_ECOLI (P09151) (522 aa) fasta scores: E(): 0%2C 82.4%25 id in 516 aa%2C and to Buchnera aphidicola 2-isopropylmalate synthase LeuA SW:LEU1_BUCRP (P48571) (518 aa) fasta scores: E(): 0%2C 72.3%25 id in 517 aa. IS200-like element inserted 39 bp upstream of the translational start. Possible polar effects on transciption%2C and therefore function.;gbkey=CDS;gene=leuA;product=2-isopropylmalate synthase;protein_id=CAL19213.1;transl_table=11
AL590842.1	EMBL	sequence_feature	577471	578307	.	-	.	ID=id1307;Note=Pfam match to entry PF00682 HMGL-like%2C HMGL-like%2Cscore 497.60%2C E-value 9.8e-146;gbkey=misc_feature;gene=leuA;inference=protein motif:PF00682
AL590842.1	EMBL	sequence_feature	577702	577743	.	-	.	ID=id1308;Note=PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2.;gbkey=misc_feature;gene=leuA;inference=protein motif:ProSite:PS00816
AL590842.1	EMBL	sequence_feature	578254	578304	.	-	.	ID=id1309;Note=PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1.;gbkey=misc_feature;gene=leuA;inference=protein motif:ProSite:PS00815
AL590842.1	EMBL	repeat_region	578376	579087	.	-	.	ID=id1310;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	578484	578942	.	-	.	ID=gene534;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO0534
AL590842.1	EMBL	CDS	578484	578942	.	-	0	ID=cds523;Parent=gene534;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL19214.1;Name=CAL19214.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL19214.1;transl_table=11
AL590842.1	EMBL	sequence_feature	578577	578888	.	-	.	ID=id1311;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	sequence_feature	579100	580243	.	-	.	ID=id1312;Note=Region of noncoding DNA with low GC%25 content%2C33.12%25;gbkey=misc_feature
AL590842.1	EMBL	gene	580264	581220	.	+	.	ID=gene535;Name=leuO;gbkey=Gene;gene=leuO;gene_biotype=protein_coding;locus_tag=YPO0535
AL590842.1	EMBL	CDS	580264	581220	.	+	0	ID=cds524;Parent=gene535;Dbxref=GOA:Q0WJD1,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q0WJD1,NCBI_GP:CAL19215.1;Name=CAL19215.1;Note=Similar to Escherichia coli LysR-family transcriptional regulator LeuO TR:Q9XD92 (EMBL:AF106955) (349 aa) fasta scores: E(): 0%2C 61.4%25 id in 293 aa%2C and to Salmonella typhimurium putative transcriptional regulator LeuO TR:Q9X4P8 (EMBL:AF117227) (341 aa) fasta scores: E(): 0%2C 66.3%25 id in 291 aa;gbkey=CDS;gene=leuO;inference=similar to sequence:INSDC:AF117227;product=LysR-family transcriptional regulator LeuO;protein_id=CAL19215.1;transl_table=11
AL590842.1	EMBL	sequence_feature	580342	580770	.	+	.	ID=id1313;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 118.90%2C E-value 9.5e-32;gbkey=misc_feature;gene=leuO;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	580381	580446	.	+	.	ID=id1314;Note=Predicted helix-turn-helix motif with score 1520 (+4.36 SD) at aa 40-61%2C sequence QNVTRAAQSLGMSQPAVSNAVA;gbkey=misc_feature;gene=leuO
AL590842.1	EMBL	sequence_feature	580384	580476	.	+	.	ID=id1315;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature.;gbkey=misc_feature;gene=leuO;inference=protein motif:ProSite:PS00044
AL590842.1	EMBL	sequence_feature	580774	581214	.	+	.	ID=id1316;Note=Pfam match to entry PF01046 NodD_C_term%2C NodD transcription activator carboxyl terminal region%2C score 92.50%2C E-value 2.7e-26;gbkey=misc_feature;gene=leuO;inference=protein motif:PF01046
AL590842.1	EMBL	gene	581549	581755	.	+	.	ID=gene536;Name=YPO0536;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0536
AL590842.1	EMBL	CDS	581549	581755	.	+	0	ID=cds525;Parent=gene536;Dbxref=UniProtKB/TrEMBL:Q74Q63,NCBI_GP:CAL19216.1;Name=CAL19216.1;Note=Doubtful CDS with no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19216.1;transl_table=11
AL590842.1	EMBL	gene	581752	583557	.	+	.	ID=gene537;Name=YPO0537;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0537
AL590842.1	EMBL	CDS	581752	583557	.	+	0	ID=cds526;Parent=gene537;Dbxref=GOA:Q7CGA4,InterPro:IPR000873,InterPro:IPR020845,UniProtKB/TrEMBL:Q7CGA4,NCBI_GP:CAL19217.1;Name=CAL19217.1;Note=Similar to Rattus norvegicus long-chain-fatty-acid--CoA ligase FACL5 SW:LCFE_RAT (O88813) (683 aa) fasta scores: E(): 0%2C 29.7%25 id in 609 aa%2Cand to Vibrio cholerae putative long-chain-fatty-acid--CoA ligase VC2484 TR:Q9KP89 (EMBL:AE004318) (601 aa) fasta scores: E(): 0%2C 56.7%25 id in 596 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004318;product=putative AMP-binding enzyme-family protein;protein_id=CAL19217.1;transl_table=11
AL590842.1	EMBL	sequence_feature	581866	583239	.	+	.	ID=id1317;Note=Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%2C score -80.50%2C E-value 6.4e-11;gbkey=misc_feature;inference=protein motif:PF00501
AL590842.1	EMBL	sequence_feature	582310	582345	.	+	.	ID=id1318;Note=PS00455 Putative AMP-binding domain signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00455
AL590842.1	EMBL	gene	583588	583698	.	+	.	ID=gene538;Name=YPO0538;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0538
AL590842.1	EMBL	CDS	583588	583698	.	+	0	ID=cds527;Parent=gene538;Dbxref=UniProtKB/TrEMBL:Q0WJC8,NCBI_GP:CAL19218.1;Name=CAL19218.1;Note=Doubtful CDS with no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19218.1;transl_table=11
AL590842.1	EMBL	sequence_feature	583597	583665	.	+	.	ID=id1319;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	584017	585744	.	+	.	ID=gene539;Name=ilvI;gbkey=Gene;gene=ilvI;gene_biotype=protein_coding;locus_tag=YPO0539
AL590842.1	EMBL	CDS	584017	585744	.	+	0	ID=cds528;Parent=gene539;Dbxref=GOA:Q0WJC7,InterPro:IPR000399,InterPro:IPR011766,InterPro:IPR012000,InterPro:IPR012001,InterPro:IPR012846,InterPro:IPR029035,InterPro:IPR029061,UniProtKB/TrEMBL:Q0WJC7,NCBI_GP:CAL19219.1;Name=CAL19219.1;Note=Similar to Escherichia coli acetolactate synthase isozyme III large subunit IlvI SW:ILVI_ECOLI (P00893) (574 aa) fasta scores: E(): 0%2C 84.0%25 id in 575 aa%2C and to Buchnera aphidicola acetolactate synthase large subunit IlvI SW:ILVI_BUCAP (O85293) (571 aa) fasta scores: E(): 0%2C73.5%25 id in 573 aa;gbkey=CDS;gene=ilvI;product=acetolactate synthase isozyme III large subunit;protein_id=CAL19219.1;transl_table=11
AL590842.1	EMBL	sequence_feature	584056	585648	.	+	.	ID=id1320;Note=Pfam match to entry PF00205 TPP_enzymes%2C Thiamine pyrophosphate enzymes%2C score 941.80%2C E-value 3.4e-292;gbkey=misc_feature;gene=ilvI;inference=protein motif:PF00205
AL590842.1	EMBL	sequence_feature	584206	584298	.	+	.	ID=id1321;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature.;gbkey=misc_feature;gene=ilvI;inference=protein motif:ProSite:PS00044
AL590842.1	EMBL	sequence_feature	585307	585366	.	+	.	ID=id1322;Note=PS00187 Thiamine pyrophosphate enzymes signature.;gbkey=misc_feature;gene=ilvI;inference=protein motif:ProSite:PS00187
AL590842.1	EMBL	gene	585747	586241	.	+	.	ID=gene540;Name=ilvH;gbkey=Gene;gene=ilvH;gene_biotype=protein_coding;locus_tag=YPO0540
AL590842.1	EMBL	CDS	585747	586241	.	+	0	ID=cds529;Parent=gene540;Dbxref=GOA:Q0WJC6,InterPro:IPR002912,InterPro:IPR004789,InterPro:IPR019455,UniProtKB/TrEMBL:Q0WJC6,NCBI_GP:CAL19220.1;Name=CAL19220.1;Note=Similar to Salmonella typhimurium acetolactate synthase isozyme III small subunit IlvH SW:ILVH_SALTY (P21622) (163 aa) fasta scores: E(): 0%2C 88.3%25 id in 162 aa%2Cand to Escherichia coli acetolactate synthase isozyme III small subunit Ilvh SW:ILVH_ECOLI (P00894) (163 aa) fasta scores: E(): 0%2C 87.0%25 id in 162 aa;gbkey=CDS;gene=ilvH;product=acetolactate synthase isozyme III small subunit;protein_id=CAL19220.1;transl_table=11
AL590842.1	EMBL	sequence_feature	585747	585863	.	+	.	ID=id1323;Note=PS00430 TonB-dependent receptor proteins signature 1.;gbkey=misc_feature;gene=ilvH;inference=protein motif:ProSite:PS00430
AL590842.1	EMBL	sequence_feature	585756	585977	.	+	.	ID=id1324;Note=Pfam match to entry PF01842 ACT%2C ACT domain%2C score 71.50%2C E-value 1.8e-17;gbkey=misc_feature;gene=ilvH;inference=protein motif:PF01842
AL590842.1	EMBL	repeat_region	586295	587006	.	+	.	ID=id1325;Note=Contains a 'A' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	586440	586898	.	+	.	ID=gene541;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO0541
AL590842.1	EMBL	CDS	586440	586898	.	+	0	ID=cds530;Parent=gene541;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL19221.1;Name=CAL19221.1;Note=Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541 element transposase TnpTR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL19221.1;transl_table=11
AL590842.1	EMBL	sequence_feature	586494	586805	.	+	.	ID=id1326;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	587220	587336	.	-	.	ID=gene542;Name=YPO0542;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0542
AL590842.1	EMBL	CDS	587220	587336	.	-	0	ID=cds531;Parent=gene542;Dbxref=UniProtKB/TrEMBL:Q0WJC4,NCBI_GP:CAL19222.1;Name=CAL19222.1;Note=Doubtful CDS with no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19222.1;transl_table=11
AL590842.1	EMBL	gene	587403	588413	.	+	.	ID=gene543;Name=cra;gbkey=Gene;gene=cra;gene_biotype=protein_coding;gene_synonym=fruC,fruR,shl;locus_tag=YPO0543
AL590842.1	EMBL	CDS	587403	588413	.	+	0	ID=cds532;Parent=gene543;Dbxref=GOA:Q7CGA6,InterPro:IPR000843,InterPro:IPR001761,InterPro:IPR010982,InterPro:IPR012781,InterPro:IPR028082,UniProtKB/TrEMBL:Q7CGA6,NCBI_GP:CAL19223.1;Name=CAL19223.1;Note=Similar to Escherichia coli fructose repressor (catabolite repressor/activator) FruR SW:FRUR_ECOLI (P21168) (334 aa) fasta scores: E(): 0%2C 89.2%25 id in 334 aa%2Cand to Vibrio cholerae fructose repressor VCA0519 TR:Q9KM69 (EMBL:AE004382) (326 aa) fasta scores: E(): 0%2C 45.5%25 id in 323 aa;gbkey=CDS;gene=cra;inference=similar to sequence:INSDC:AE004382;product=putative fructose repressor;protein_id=CAL19223.1;transl_table=11
AL590842.1	EMBL	sequence_feature	587403	587480	.	+	.	ID=id1327;Note=Pfam match to entry PF00356 lacI%2C Bacterial regulatory proteins%2C lacI family%2C score 34.40%2C E-value 3.2e-08;gbkey=misc_feature;gene=cra;inference=protein motif:PF00356
AL590842.1	EMBL	sequence_feature	587403	587468	.	+	.	ID=id1328;Note=Predicted helix-turn-helix motif with score 1821 (+5.39 SD) at aa 1-22%2C sequence MKLDEIARLAGVSRTTASYVIN;gbkey=misc_feature;gene=cra
AL590842.1	EMBL	sequence_feature	587409	587465	.	+	.	ID=id1329;Note=PS00356 Bacterial regulatory proteins%2C lacI family signature.;gbkey=misc_feature;gene=cra;inference=protein motif:ProSite:PS00356
AL590842.1	EMBL	sequence_feature	587580	588305	.	+	.	ID=id1330;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 35.90%2C E-value 3.5e-08;gbkey=misc_feature;gene=cra;inference=protein motif:PF00532
AL590842.1	EMBL	gene	588544	588990	.	-	.	ID=gene544;Name=YPO0544;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0544
AL590842.1	EMBL	CDS	588544	588990	.	-	0	ID=cds533;Parent=gene544;Dbxref=GOA:Q0WJC2,InterPro:IPR010574,NCBI_GP:CAL19224.1;Name=CAL19224.1;Note=Similar to Escherichia coli hypothetical protein YgaW SW:YGAW_ECOLI (P76626) (149 aa) fasta scores: E(): 0%2C65.5%25 id in 145 aa%2C and to Vibrio cholerae hypothetical protein VC1828 TR:Q9KR19 (EMBL:AE004259) (150 aa) fasta scores: E(): 0%2C 61.6%25 id in 146 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004259;product=putative membrane protein;protein_id=CAL19224.1;transl_table=11
AL590842.1	EMBL	sequence_feature	588586	588651	.	-	.	ID=id1331;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	588670	588735	.	-	.	ID=id1332;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	588799	588855	.	-	.	ID=id1333;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	588886	588951	.	-	.	ID=id1334;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	590086	590544	.	+	.	ID=gene545;Name=YPO0546;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0546
AL590842.1	EMBL	CDS	590086	590544	.	+	0	ID=cds534;Parent=gene545;Dbxref=GOA:Q8ZIF8,InterPro:IPR003444,InterPro:IPR020603,NCBI_GP:CAL19225.1;Name=CAL19225.1;Note=Similar to Escherichia coli hypothetical protein YabB SW:YABB_ECOLI (P22186) (152 aa) fasta scores: E(): 0%2C84.9%25 id in 152 aa%2C and to Haemophilus influenzae hypothetical protein HI1129 SW:YABB_HAEIN (P45056) (151 aa) fasta scores: E(): 0%2C 62.6%25 id in 139 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19225.1;transl_table=11
AL590842.1	EMBL	sequence_feature	590086	590313	.	+	.	ID=id1335;Note=Pfam match to entry PF02381 UPF0040%2C %2C score 106.20%2CE-value 6.3e-28;gbkey=misc_feature;inference=protein motif:PF02381
AL590842.1	EMBL	sequence_feature	590314	590535	.	+	.	ID=id1336;Note=Pfam match to entry PF02381 UPF0040%2C %2C score 83.00%2CE-value 5.9e-21;gbkey=misc_feature;inference=protein motif:PF02381
AL590842.1	EMBL	gene	590547	591509	.	+	.	ID=gene546;Name=YPO0547;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0547
AL590842.1	EMBL	CDS	590547	591509	.	+	0	ID=cds535;Parent=gene546;Dbxref=GOA:Q8ZIF7,InterPro:IPR002903,InterPro:IPR023397,InterPro:IPR029063,NCBI_GP:CAL19226.1;Name=CAL19226.1;Note=Similar to Escherichia coli protein YabC SW:YABC_ECOLI (P18595) (313 aa) fasta scores: E(): 0%2C 77.2%25 id in 307 aa%2C and to Vibrio cholerae hypothetical protein VC2409 TR:Q9KPF9 (EMBL:AE004310) (316 aa) fasta scores: E(): 0%2C 64.0%25 id in 314 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004310;product=conserved hypothetical protein;protein_id=CAL19226.1;transl_table=11
AL590842.1	EMBL	sequence_feature	590580	591500	.	+	.	ID=id1337;Note=Pfam match to entry PF01795 UPF0117%2C Domain of unknown function DUF36%2C score 589.10%2C E-value 2.9e-176;gbkey=misc_feature;inference=protein motif:PF01795
AL590842.1	EMBL	gene	591506	591823	.	+	.	ID=gene547;Name=ftsL;gbkey=Gene;gene=ftsL;gene_biotype=protein_coding;gene_synonym=mraR;locus_tag=YPO0548
AL590842.1	EMBL	CDS	591506	591823	.	+	0	ID=cds536;Parent=gene547;Dbxref=GOA:Q7CGA7,InterPro:IPR011922,NCBI_GP:CAL19227.1;Name=CAL19227.1;Note=Similar to Escherichia coli inner membrane protein essential for cell growth and division%2C FtsL SW:FTSL_ECOLI (P22187) (121 aa) fasta scores: E(): 2.5e-30%2C 76.5%25 id in 102 aa%2C and to Vibrio cholerae cell division protein FtsL VC2408 TR:Q9KPG0 (EMBL:AE004310) (106 aa) fasta scores: E(): 5.2e-12%2C 42.1%25 id in 95 aa;gbkey=CDS;gene=ftsL;inference=similar to sequence:INSDC:AE004310;product=putative cell division protein;protein_id=CAL19227.1;transl_table=11
AL590842.1	EMBL	sequence_feature	591566	591634	.	+	.	ID=id1338;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=ftsL;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	591889	593652	.	+	.	ID=gene548;Name=ftsI;gbkey=Gene;gene=ftsI;gene_biotype=protein_coding;gene_synonym=pbpB;locus_tag=YPO0549
AL590842.1	EMBL	CDS	591889	593652	.	+	0	ID=cds537;Parent=gene548;Dbxref=GOA:Q7CGA8,InterPro:IPR001460,InterPro:IPR005311,InterPro:IPR012338,UniProtKB/TrEMBL:Q7CGA8,NCBI_GP:CAL19228.1;Name=CAL19228.1;Note=Similar to Escherichia coli penicillin-binding protein 3 PbpB SW:PBP3_ECOLI (P04286) (588 aa) fasta scores: E(): 0%2C 84.4%25 id in 588 aa%2C and to Buchnera aphidicola penicillin-binding protein 3 FtsI SW:PBP3_BUCAP (O85297) (568 aa) fasta scores: E(): 0%2C 57.3%25 id in 558 aa;gbkey=CDS;gene=ftsI;product=penicillin-binding protein 3;protein_id=CAL19228.1;transl_table=11
AL590842.1	EMBL	sequence_feature	591949	592017	.	+	.	ID=id1339;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=ftsI;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	592597	593541	.	+	.	ID=id1340;Note=Pfam match to entry PF00905 Transpeptidase%2CPenicillin binding protein transpeptidase domain%2C score 436.50%2C E-value 2.3e-127;gbkey=misc_feature;gene=ftsI;inference=protein motif:PF00905
AL590842.1	EMBL	gene	593654	595126	.	+	.	ID=gene549;Name=murE;gbkey=Gene;gene=murE;gene_biotype=protein_coding;locus_tag=YPO0550
AL590842.1	EMBL	CDS	593654	595126	.	+	0	ID=cds538;Parent=gene549;Dbxref=GOA:Q8ZIF4,InterPro:IPR000713,InterPro:IPR004101,InterPro:IPR005761,InterPro:IPR013221,NCBI_GP:CAL19229.1;Name=CAL19229.1;Note=Similar to Escherichia coli UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C6-diaminopimelat e ligase MurE SW:MURE_ECOLI (P22188) (494 aa) fasta scores: E(): 0%2C 77.6%25 id in 487 aa%2C and to Haemophilus influenzae UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C6-diaminopimelat e ligase HI1133 SW:MURE_HAEIN (P45060) (488 aa) fasta scores: E(): 0%2C 55.3%25 id in 463 aa;gbkey=CDS;gene=murE;product=UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C6-diam i nopimelate ligase;protein_id=CAL19229.1;transl_table=11
AL590842.1	EMBL	sequence_feature	593969	594724	.	+	.	ID=id1341;Note=Pfam match to entry PF01225 Mur_ligase%2C Mur ligase family%2C score 249.80%2C E-value 3.9e-71;gbkey=misc_feature;gene=murE;inference=protein motif:PF01225
AL590842.1	EMBL	gene	595123	596499	.	+	.	ID=gene550;Name=mra;gbkey=Gene;gene=mra;gene_biotype=protein_coding;gene_synonym=murF;locus_tag=YPO0551
AL590842.1	EMBL	CDS	595123	596499	.	+	0	ID=cds539;Parent=gene550;Dbxref=GOA:Q7CGA9,InterPro:IPR000713,InterPro:IPR004101,InterPro:IPR005863,InterPro:IPR013221,UniProtKB/TrEMBL:Q7CGA9,NCBI_GP:CAL19230.1;Name=CAL19230.1;Note=Similar to Escherichia coli UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C6-diaminopimelate--D-alanyl-D-alanyl ligase MurF SW:MURF_ECOLI (P11880) (452 aa) fasta scores: E(): 0%2C 69.9%25 id in 458 aa%2C and to Haemophilus influenzae UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C6-diaminopimelate--D-alanyl-D-alanyl ligase HI1134 SW:MURF_HAEIN (P45061) (457 aa) fasta scores: E(): 0%2C 49.5%25 id in 467 aa%3B~deleted EC_number 6.3.2.15;gbkey=CDS;gene=mra;product=UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C6-diamin o pimelate--D-alanyl-D-alanyl ligase;protein_id=CAL19230.1;transl_table=11
AL590842.1	EMBL	sequence_feature	595441	596175	.	+	.	ID=id1342;Note=Pfam match to entry PF01225 Mur_ligase%2C Mur ligase family%2C score 233.20%2C E-value 3.8e-66;gbkey=misc_feature;gene=mra;inference=protein motif:PF01225
AL590842.1	EMBL	gene	596493	597575	.	+	.	ID=gene551;Name=mraY;gbkey=Gene;gene=mraY;gene_biotype=protein_coding;gene_synonym=murX;locus_tag=YPO0552
AL590842.1	EMBL	CDS	596493	597575	.	+	0	ID=cds540;Parent=gene551;Dbxref=GOA:Q8ZIF2,InterPro:IPR000715,InterPro:IPR003524,InterPro:IPR018480,NCBI_GP:CAL19231.1;Name=CAL19231.1;Note=Similar to Escherichia coli phospho-N-acetylmuramoyl-pentapeptide-transferase MraY SW:MRAY_ECOLI (P15876) (360 aa) fasta scores: E(): 0%2C 89.7%25 id in 360 aa%2C and to Vibrio cholerae phospho-N-acetylmuramoyl-pentapeptide-transferase VC2404 TR:Q9KPG4 (EMBL:AE004310) (360 aa) fasta scores: E(): 0%2C81.4%25 id in 360 aa;gbkey=CDS;gene=mraY;inference=similar to sequence:INSDC:AE004310;product=phospho-N-acetylmuramoyl-pentapeptide-transferas e;protein_id=CAL19231.1;transl_table=11
AL590842.1	EMBL	sequence_feature	596568	596636	.	+	.	ID=id1343;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=mraY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	596715	596768	.	+	.	ID=id1344;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=mraY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	596781	596834	.	+	.	ID=id1345;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=mraY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	596784	597362	.	+	.	ID=id1346;Note=Pfam match to entry PF00953 Glycos_transf_4%2CGlycosyl transferase%2C score 288.30%2C E-value 9.7e-83;gbkey=misc_feature;gene=mraY;inference=protein motif:PF00953
AL590842.1	EMBL	sequence_feature	596892	596945	.	+	.	ID=id1347;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=mraY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	597003	597071	.	+	.	ID=id1348;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=mraY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	597090	597149	.	+	.	ID=id1349;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=mraY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	597192	597260	.	+	.	ID=id1350;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=mraY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	597279	597347	.	+	.	ID=id1351;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=mraY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	597357	597425	.	+	.	ID=id1352;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=mraY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	597504	597563	.	+	.	ID=id1353;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=mraY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	597578	598894	.	+	.	ID=gene552;Name=murD;gbkey=Gene;gene=murD;gene_biotype=protein_coding;locus_tag=YPO0553
AL590842.1	EMBL	CDS	597578	598894	.	+	0	ID=cds541;Parent=gene552;Dbxref=GOA:Q8ZIF1,InterPro:IPR004101,InterPro:IPR005762,InterPro:IPR013221,InterPro:IPR016040,NCBI_GP:CAL19232.1;Name=CAL19232.1;Note=Similar to Escherichia coli UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD SW:MURD_ECOLI (P14900) (437 aa) fasta scores: E(): 0%2C 81.0%25 id in 436 aa%2C and to Haemophilus influenzae UDP-N-acetylmuramoylalanine--D-glutamate ligase HI1136 SW:MURD_HAEIN (P45063) (437 aa) fasta scores: E(): 0%2C 58.4%25 id in 438 aa;gbkey=CDS;gene=murD;product=UDP-N-acetylmuramoylalanine--D-glutamate ligase;protein_id=CAL19232.1;transl_table=11
AL590842.1	EMBL	sequence_feature	597602	597670	.	+	.	ID=id1354;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=murD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	597608	597640	.	+	.	ID=id1355;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=murD;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	597896	598546	.	+	.	ID=id1356;Note=Pfam match to entry PF01225 Mur_ligase%2C Mur ligase family%2C score 231.70%2C E-value 1e-65;gbkey=misc_feature;gene=murD;inference=protein motif:PF01225
AL590842.1	EMBL	gene	598894	600096	.	+	.	ID=gene553;Name=ftsW;gbkey=Gene;gene=ftsW;gene_biotype=protein_coding;locus_tag=YPO0554
AL590842.1	EMBL	CDS	598894	600096	.	+	0	ID=cds542;Parent=gene553;Dbxref=GOA:Q7CGB0,InterPro:IPR001182,InterPro:IPR013437,InterPro:IPR018365,UniProtKB/TrEMBL:Q7CGB0,NCBI_GP:CAL19233.1;Name=CAL19233.1;Note=Similar to Escherichia coli cell division protein FtsW SW:FTSW_ECOLI (P16457) (414 aa) fasta scores: E(): 0%2C80.6%25 id in 403 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) (Acyrthosiphon pisum symbiotic bacterium) cell division protein FtsW SW:FTSW_BUCAI (P57312) (399 aa) fasta scores: E(): 0%2C 62.7%25 id in 373 aa;gbkey=CDS;gene=ftsW;inference=protein motif:TMHMM:2.0;product=cell division protein FtsW;protein_id=CAL19233.1;transl_table=11
AL590842.1	EMBL	sequence_feature	598987	600060	.	+	.	ID=id1357;Note=Pfam match to entry PF01098 FTSW_RODA_SPOVE%2C Cell cycle protein%2C score 581.40%2C E-value 5.6e-171;gbkey=misc_feature;gene=ftsW;inference=protein motif:PF01098
AL590842.1	EMBL	sequence_feature	598990	599049	.	+	.	ID=id1358;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=ftsW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	599107	599160	.	+	.	ID=id1359;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=ftsW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	599188	599256	.	+	.	ID=id1360;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=ftsW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	599374	599433	.	+	.	ID=id1361;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=ftsW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	599443	599502	.	+	.	ID=id1362;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=ftsW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	599515	599583	.	+	.	ID=id1363;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=ftsW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	599770	599838	.	+	.	ID=id1364;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=ftsW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	599872	599940	.	+	.	ID=id1365;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=ftsW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	599926	600000	.	+	.	ID=id1366;Note=PS00428 Cell cycle proteins ftsW / rodA / spoVE signature.;gbkey=misc_feature;gene=ftsW;inference=protein motif:ProSite:PS00428
AL590842.1	EMBL	sequence_feature	599968	600036	.	+	.	ID=id1367;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=ftsW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	600093	601163	.	+	.	ID=gene554;Name=murG;gbkey=Gene;gene=murG;gene_biotype=protein_coding;locus_tag=YPO0555
AL590842.1	EMBL	CDS	600093	601163	.	+	0	ID=cds543;Parent=gene554;Dbxref=GOA:Q8ZIE9,InterPro:IPR004276,InterPro:IPR006009,InterPro:IPR007235,NCBI_GP:CAL19234.1;Name=CAL19234.1;Note=Similar to Escherichia coli peptidoglycan synthesis enzyme%2C UDP-N-acetylglucosamine: N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase MurG SW:MURG_ECOLI (P17443) (354 aa) fasta scores: E(): 0%2C 78.5%25 id in 354 aa%2C and to Vibrio cholerae UDP-N-acetylglucosamine:N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase VC2401 TR:Q9KPG7 (EMBL:AE004310) (354 aa) fasta scores: E(): 0%2C 62.7%25 id in 354 aa;gbkey=CDS;gene=murG;inference=similar to sequence:INSDC:AE004310;product=UDP-N-acetylglucosamine:N-acetylmuramyl-(pentape p tide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase;protein_id=CAL19234.1;transl_table=11
AL590842.1	EMBL	gene	601301	602776	.	+	.	ID=gene555;Name=murC;gbkey=Gene;gene=murC;gene_biotype=protein_coding;locus_tag=YPO0556
AL590842.1	EMBL	CDS	601301	602776	.	+	0	ID=cds544;Parent=gene555;Dbxref=GOA:Q8ZIE8,InterPro:IPR000713,InterPro:IPR004101,InterPro:IPR005758,InterPro:IPR013221,InterPro:IPR016040,PDB:4HV4,NCBI_GP:CAL19235.1;Name=CAL19235.1;Note=Similar to Escherichia coli UDP-N-acetylmuramate--alanine ligase MurC SW:MURC_ECOLI (P17952) (491 aa) fasta scores: E(): 0%2C 86.1%25 id in 490 aa%2Cand to Vibrio cholerae UDP-N-acetylmuramate--alanine ligase VC2400 TR:Q9KPG8 (EMBL:AE004310) (506 aa) fasta scores: E(): 0%2C 73.7%25 id in 479 aa;gbkey=CDS;gene=murC;inference=similar to sequence:INSDC:AE004310;product=UDP-N-acetylmuramate--alanine ligase;protein_id=CAL19235.1;transl_table=11
AL590842.1	EMBL	sequence_feature	601361	601420	.	+	.	ID=id1368;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=murC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	601661	602368	.	+	.	ID=id1369;Note=Pfam match to entry PF01225 Mur_ligase%2C Mur ligase family%2C score 247.90%2C E-value 1.4e-70;gbkey=misc_feature;gene=murC;inference=protein motif:PF01225
AL590842.1	EMBL	gene	602769	603689	.	+	.	ID=gene556;Name=ddl;gbkey=Gene;gene=ddl;gene_biotype=protein_coding;gene_synonym=ddlB;locus_tag=YPO0557
AL590842.1	EMBL	CDS	602769	603689	.	+	0	ID=cds545;Parent=gene556;Dbxref=GOA:Q8ZIE7,InterPro:IPR000291,InterPro:IPR005905,InterPro:IPR011095,InterPro:IPR011127,InterPro:IPR011761,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016185,PDB:3V4Z,NCBI_GP:CAL19236.1;Name=CAL19236.1;Note=Similar to Escherichia coli D-alanine--D-alanine ligase B DdlB SW:DDLB_ECOLI (P07862) (305 aa) fasta scores: E(): 0%2C 72.7%25 id in 304 aa%2C and to Haemophilus influenzae D-alanine--D-alanine ligase HI1140 SW:DDL_HAEIN (P44405) (306 aa) fasta scores: E(): 0%2C 58.7%25 id in 303 aa;gbkey=CDS;gene=ddl;product=D-alanine--D-alanine ligase B;protein_id=CAL19236.1;transl_table=11
AL590842.1	EMBL	sequence_feature	602775	603677	.	+	.	ID=id1370;Note=Pfam match to entry PF01820 Dala_Dala_ligas%2C D-ala D-ala ligase%2C score 515.90%2C E-value 3e-151;gbkey=misc_feature;gene=ddl;inference=protein motif:PF01820
AL590842.1	EMBL	sequence_feature	602955	602990	.	+	.	ID=id1371;Note=PS00843 D-alanine--D-alanine ligase signature 1.;gbkey=misc_feature;gene=ddl;inference=protein motif:ProSite:PS00843
AL590842.1	EMBL	sequence_feature	603510	603596	.	+	.	ID=id1372;Note=PS00844 D-alanine--D-alanine ligase signature 2.;gbkey=misc_feature;gene=ddl;inference=protein motif:ProSite:PS00844
AL590842.1	EMBL	gene	603691	604518	.	+	.	ID=gene557;Name=ftsQ;gbkey=Gene;gene=ftsQ;gene_biotype=protein_coding;locus_tag=YPO0558
AL590842.1	EMBL	CDS	603691	604518	.	+	0	ID=cds546;Parent=gene557;Dbxref=GOA:Q7CGB1,InterPro:IPR005548,InterPro:IPR013685,InterPro:IPR026579,NCBI_GP:CAL19237.1;Name=CAL19237.1;Note=Similar to Escherichia coli cell division protein FtsQ SW:FTSQ_ECOLI (P06136) (276 aa) fasta scores: E(): 0%2C66.2%25 id in 278 aa%2C and to Vibrio cholerae cell division protein VC2399 TR:Q9KPG9 (EMBL:AE004310) (260 aa) fasta scores: E(): 0%2C 42.2%25 id in 230 aa;gbkey=CDS;gene=ftsQ;inference=similar to sequence:INSDC:AE004310;product=cell division protein FtsQ;protein_id=CAL19237.1;transl_table=11
AL590842.1	EMBL	sequence_feature	603766	603834	.	+	.	ID=id1373;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=ftsQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	604545	605801	.	+	.	ID=gene558;Name=divA;gbkey=Gene;gene=divA;gene_biotype=protein_coding;gene_synonym=ftsA;locus_tag=YPO0559
AL590842.1	EMBL	CDS	604545	605801	.	+	0	ID=cds547;Parent=gene558;Dbxref=GOA:Q7CGB2,InterPro:IPR003494,InterPro:IPR020823,UniProtKB/TrEMBL:Q7CGB2,NCBI_GP:CAL19238.1;Name=CAL19238.1;Note=Similar to Escherichia coli cell division protein FtsA SW:FTSA_ECOLI (P06137) (420 aa) fasta scores: E(): 0%2C95.0%25 id in 420 aa%2C and to Vibrio cholerae cell division protein FtsA TR:Q9KPH0 (EMBL:AE004310) (420 aa) fasta scores: E(): 0%2C 69.3%25 id in 420 aa;gbkey=CDS;gene=divA;inference=similar to sequence:INSDC:AE004310;product=cell division protein FtsA;protein_id=CAL19238.1;transl_table=11
AL590842.1	EMBL	sequence_feature	604641	605798	.	+	.	ID=id1374;Note=Pfam match to entry PF02491 FtsA%2C %2C score 756.50%2CE-value 1.1e-223;gbkey=misc_feature;gene=divA;inference=protein motif:PF02491
AL590842.1	EMBL	gene	605874	607025	.	+	.	ID=gene559;Name=ftsZ;gbkey=Gene;gene=ftsZ;gene_biotype=protein_coding;gene_synonym=sfiB,sulB;locus_tag=YPO0560
AL590842.1	EMBL	CDS	605874	607025	.	+	0	ID=cds548;Parent=gene559;Dbxref=GOA:Q7CGB3,InterPro:IPR000158,InterPro:IPR003008,InterPro:IPR008280,InterPro:IPR018316,InterPro:IPR020805,InterPro:IPR024757,UniProtKB/TrEMBL:Q7CGB3,NCBI_GP:CAL19239.1;Name=CAL19239.1;Note=Similar to Escherichia coli cell division protein FtsZ SW:FTSZ_ECOLI (P06138) (383 aa) fasta scores: E(): 0%2C94.3%25 id in 384 aa%2C and to Buchnera aphidicola cell division protein FtsZ SW:FTSZ_BUCAP (O51929) (384 aa) fasta scores: E(): 0%2C 79.7%25 id in 384 aa;gbkey=CDS;gene=ftsZ;product=cell division protein FtsZ;protein_id=CAL19239.1;transl_table=11
AL590842.1	EMBL	sequence_feature	606000	606104	.	+	.	ID=id1375;Note=PS01134 FtsZ protein signature 1.;gbkey=misc_feature;gene=ftsZ;inference=protein motif:ProSite:PS01134
AL590842.1	EMBL	sequence_feature	606042	606824	.	+	.	ID=id1376;Note=Pfam match to entry PF00091 tubulin%2C Tubulin/FtsZ family%2C score 100.60%2C E-value 3.1e-26;gbkey=misc_feature;gene=ftsZ;inference=protein motif:PF00091
AL590842.1	EMBL	sequence_feature	606159	606224	.	+	.	ID=id1377;Note=PS01135 FtsZ protein signature 2.;gbkey=misc_feature;gene=ftsZ;inference=protein motif:ProSite:PS01135
AL590842.1	EMBL	gene	607110	608045	.	+	.	ID=gene560;Name=asmB;gbkey=Gene;gene=asmB;gene_biotype=protein_coding;gene_synonym=envA,lpxC;locus_tag=YPO0561
AL590842.1	EMBL	CDS	607110	608045	.	+	0	ID=cds549;Parent=gene560;Dbxref=GOA:Q8ZIE3,InterPro:IPR004463,InterPro:IPR011334,InterPro:IPR015870,InterPro:IPR020568,NCBI_GP:CAL19240.1;Name=CAL19240.1;Note=Similar to Escherichia coli lipid A biosynthesis protein%2C UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC SW:LPXC_ECOLI (P07652) (305 aa) fasta scores: E(): 0%2C 92.8%25 id in 305 aa%2C and to Vibrio cholerae UDP-3-O-3-hydroxymyristoyl N-acetylglucosamine deacetylase VC2396 TR:Q9KPH2 (EMBL:AE004310) (305 aa) fasta scores: E(): 0%2C 74.1%25 id in 305 aa;gbkey=CDS;gene=asmB;inference=similar to sequence:INSDC:AE004310;product=UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase;protein_id=CAL19240.1;transl_table=11
AL590842.1	EMBL	gene	608212	608742	.	-	.	ID=gene561;Name=YPO0562;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0562
AL590842.1	EMBL	CDS	608212	608742	.	-	0	ID=cds550;Parent=gene561;Dbxref=InterPro:IPR007922,UniProtKB/TrEMBL:Q7CGB4,NCBI_GP:CAL19241.1;Name=CAL19241.1;Note=Similar to Vibrio cholerae hypothetical protein VC2395 TR:Q9KPH3 (EMBL:AE004310) (157 aa) fasta scores: E(): 4.3e-11%2C 34.1%25 id in 164 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004310;product=conserved hypothetical protein;protein_id=CAL19241.1;transl_table=11
AL590842.1	EMBL	gene	608765	609298	.	+	.	ID=gene562;Name=YPO0563;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0563
AL590842.1	EMBL	CDS	608765	609298	.	+	0	ID=cds551;Parent=gene562;Dbxref=GOA:Q8ZIE1,InterPro:IPR009502,NCBI_GP:CAL19242.1;Name=CAL19242.1;Note=C-terminus similar to Escherichia coli hypothetical protein YacA SW:YACA_ECOLI (P10409) (147 aa) fasta scores: E(): 6e-18%2C 44.0%25 id in 159 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL19242.1;transl_table=11
AL590842.1	EMBL	sequence_feature	608807	608875	.	+	.	ID=id1378;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	609376	612090	.	+	.	ID=gene563;Name=azi;gbkey=Gene;gene=azi;gene_biotype=protein_coding;gene_synonym=pea,prlD,secA;locus_tag=YPO0564
AL590842.1	EMBL	CDS	609376	612090	.	+	0	ID=cds552;Parent=gene563;Dbxref=GOA:Q7CGB6,InterPro:IPR000185,InterPro:IPR004027,InterPro:IPR011115,InterPro:IPR011116,InterPro:IPR011130,InterPro:IPR014018,InterPro:IPR020937,InterPro:IPR027417,NCBI_GP:CAL19243.1;Name=CAL19243.1;Note=Similar to Escherichia coli preprotein translocase SecA SW:SECA_ECOLI (P10408) (901 aa) fasta scores: E(): 0%2C89.2%25 id in 904 aa%2C and to Vibrio alginolyticus preprotein translocase SecA TR:O87123 (EMBL:AB012226) (908 aa) fasta scores: E(): 0%2C 70.6%25 id in 909 aa;gbkey=CDS;gene=azi;inference=similar to sequence:INSDC:AB012226;product=preprotein translocase SecA;protein_id=CAL19243.1;transl_table=11
AL590842.1	EMBL	sequence_feature	609391	610689	.	+	.	ID=id1379;Note=Pfam match to entry PF01043 SecA_protein%2C SecA protein%2C amino terminal region%2C score 1104.80%2C E-value 0;gbkey=misc_feature;gene=azi;inference=protein motif:PF01043
AL590842.1	EMBL	sequence_feature	610873	610920	.	+	.	ID=id1380;Note=PS01312 Protein secA signatures.;gbkey=misc_feature;gene=azi;inference=protein motif:ProSite:PS01312
AL590842.1	EMBL	gene	612385	612771	.	+	.	ID=gene564;Name=mutT;gbkey=Gene;gene=mutT;gene_biotype=protein_coding;locus_tag=YPO0565
AL590842.1	EMBL	CDS	612385	612771	.	+	0	ID=cds553;Parent=gene564;Dbxref=GOA:Q7CGB7,InterPro:IPR000086,InterPro:IPR003561,InterPro:IPR015797,InterPro:IPR020084,InterPro:IPR020476,UniProtKB/TrEMBL:Q7CGB7,NCBI_GP:CAL19244.1;Name=CAL19244.1;Note=Similar to Escherichia coli mutator protein MutT SW:MUTT_ECOLI (P08337) (129 aa) fasta scores: E(): 1.9e-28%2C60.2%25 id in 128 aa%2C and to Haemophilus influenzae mutator protein MutT SW:MUTT_HAEIN (P44932) (136 aa) fasta scores: E(): 5.7e-22%2C 51.2%25 id in 125 aa;gbkey=CDS;gene=mutT;product=mutator protein MutT;protein_id=CAL19244.1;transl_table=11
AL590842.1	EMBL	sequence_feature	612394	612768	.	+	.	ID=id1381;Note=Pfam match to entry PF00293 mutT%2C Bacterial mutT protein%2C score 104.40%2C E-value 2.3e-27;gbkey=misc_feature;gene=mutT;inference=protein motif:PF00293
AL590842.1	EMBL	sequence_feature	612496	612555	.	+	.	ID=id1382;Note=PS00893 mutT domain signature.;gbkey=misc_feature;gene=mutT;inference=protein motif:ProSite:PS00893
AL590842.1	EMBL	repeat_region	612841	612966	.	+	.	ID=id1383;Note=truncated insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	repeat_region	612967	614920	.	-	.	ID=id1384;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	612967	612994	.	+	.	ID=id1385;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	613033	613815	.	-	.	ID=gene565;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO0566
AL590842.1	EMBL	CDS	613033	613815	.	-	0	ID=cds554;Parent=gene565;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL19245.1;Name=CAL19245.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL19245.1;transl_table=11
AL590842.1	EMBL	sequence_feature	613108	613647	.	-	.	ID=id1386;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	613465	613488	.	-	.	ID=id1387;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	613812	614834	.	-	.	ID=gene566;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO0567
AL590842.1	EMBL	CDS	613812	614834	.	-	0	ID=cds555;Parent=gene566;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL19246.1;Name=CAL19246.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL19246.1;transl_table=11
AL590842.1	EMBL	sequence_feature	613956	614489	.	-	.	ID=id1388;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	sequence_feature	614718	614783	.	-	.	ID=id1389;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	614727	614810	.	-	.	ID=id1390;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	INVERTED	614893	614920	.	-	.	ID=id1391;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	615113	615481	.	-	.	ID=gene567;Name=YPO0568;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0568
AL590842.1	EMBL	CDS	615113	615481	.	-	0	ID=cds556;Parent=gene567;Dbxref=InterPro:IPR011637,UniProtKB/TrEMBL:Q0WJ99,NCBI_GP:CAL19247.1;Name=CAL19247.1;Note=Similar to Escherichia coli hypothetical protein YqjF SW:YQJF_ECOLI (P42619) (160 aa) fasta scores: E(): 0%2C77.0%25 id in 122 aa%2C and to Escherichia coli hypothetical protein YphA SW:YPHA_ECOLI (P77751) (164 aa) fasta scores: E(): 2.1e-11%2C 40.7%25 id in 123 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL19247.1;transl_table=11
AL590842.1	EMBL	sequence_feature	615125	615190	.	-	.	ID=id1392;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	615236	615289	.	-	.	ID=id1393;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	615305	615370	.	-	.	ID=id1394;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	615401	615466	.	-	.	ID=id1395;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	615812	616096	.	-	.	ID=gene568;Name=YPO0569;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0569
AL590842.1	EMBL	CDS	615812	616096	.	-	0	ID=cds557;Parent=gene568;Dbxref=InterPro:IPR025612,UniProtKB/TrEMBL:Q7CGC0,NCBI_GP:CAL19248.1;Name=CAL19248.1;Note=Similar to Escherichia coli hypothetical protein YqjK SW:YQJK_ECOLI (Q47710) (99 aa) fasta scores: E(): 1.6e-13%2C 42.7%25 id in 82 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19248.1;transl_table=11
AL590842.1	EMBL	gene	616093	616488	.	-	.	ID=gene569;Name=YPO0569a;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0569a
AL590842.1	EMBL	CDS	616093	616488	.	-	0	ID=cds558;Parent=gene569;Dbxref=InterPro:IPR009937,UniProtKB/TrEMBL:Q7CGC1,NCBI_GP:CAL19249.1;Name=CAL19249.1;Note=Similar to Escherichia coli hypothetical protein YqjE SW:YQJE_ECOLI (P42618) (134 aa) fasta scores: E(): 6.7e-29%2C 62.3%25 id in 130 aa%2C and to Sesamum indicum hypothetical oleosin protein TR:O04925 (EMBL:U97700) (144 aa) fasta scores: E(): 6.7%2C 29.4%25 id in 136 aa;gbkey=CDS;inference=similar to sequence:INSDC:U97700;product=conserved hypothetical protein;protein_id=CAL19249.1;transl_table=11
AL590842.1	EMBL	gene	616491	616796	.	-	.	ID=gene570;Name=yqjD;gbkey=Gene;gene=yqjD;gene_biotype=protein_coding;locus_tag=YPO0570
AL590842.1	EMBL	CDS	616491	616796	.	-	0	ID=cds559;Parent=gene570;Dbxref=InterPro:IPR010279,UniProtKB/TrEMBL:Q7CGC2,NCBI_GP:CAL19250.1;Name=CAL19250.1;Note=Similar to Escherichia coli hypothetical protein YqjD SW:YQJD_ECOLI (P42617) (101 aa) fasta scores: E(): 9.5e-20%2C 69.3%25 id in 101 aa%2C and to Escherichia coli ElaB protein SW:ELAB_ECOLI (P52084) (101 aa) fasta scores: E(): 5.3e-11%2C 49.4%25 id in 89 aa;gbkey=CDS;gene=yqjD;product=putative membrane protein;protein_id=CAL19250.1;transl_table=11
AL590842.1	EMBL	sequence_feature	616503	616553	.	-	.	ID=id1396;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=yqjD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	616801	616947	.	-	.	ID=gene571;Name=YPO0571;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0571
AL590842.1	EMBL	CDS	616801	616947	.	-	0	ID=cds560;Parent=gene571;Dbxref=UniProtKB/TrEMBL:Q7CGC3,NCBI_GP:CAL19251.1;Name=CAL19251.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19251.1;transl_table=11
AL590842.1	EMBL	gene	616951	617331	.	-	.	ID=gene572;Name=YPO0572;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0572
AL590842.1	EMBL	CDS	616951	617331	.	-	0	ID=cds561;Parent=gene572;Dbxref=InterPro:IPR009468,UniProtKB/TrEMBL:Q0WJ94,NCBI_GP:CAL19252.1;Name=CAL19252.1;Note=Similar to Escherichia coli hypothetical protein YqjC SW:YQJC_ECOLI (P42616) (127 aa) fasta scores: E(): 1.1e-12%2C 42.3%25 id in 123 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0542 TR:AAG03931 (EMBL:AE004490) (139 aa) fasta scores: E(): 7.3e-10%2C 41.9%25 id in 117 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004490;product=putative exported protein;protein_id=CAL19252.1;transl_table=11
AL590842.1	EMBL	gene	617557	617946	.	-	.	ID=gene573;Name=YPO0573;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0573
AL590842.1	EMBL	CDS	617557	617946	.	-	0	ID=cds562;Parent=gene573;Dbxref=GOA:Q7CGC4,InterPro:IPR026574,InterPro:IPR027398,UniProtKB/TrEMBL:Q7CGC4,NCBI_GP:CAL19253.1;Name=CAL19253.1;Note=Similar to Escherichia coli hypothetical protein YqjB SW:YQJB_ECOLI (P42615) (127 aa) fasta scores: E(): 1.3e-10%2C 38.7%25 id in 111 aa%2C and to the N-terminus of Neisseria meningitidis hypothetical protein SecD TR:Q9JVJ5 (EMBL:AL162754) (618 aa) fasta scores: E(): 0.32%2C 22.3%25 id in 121 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL162754;product=putative membrane protein;protein_id=CAL19253.1;transl_table=11
AL590842.1	EMBL	sequence_feature	617842	617907	.	-	.	ID=id1397;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	617943	618641	.	-	.	ID=gene574;Name=yqjA;gbkey=Gene;gene=yqjA;gene_biotype=protein_coding;locus_tag=YPO0574
AL590842.1	EMBL	CDS	617943	618641	.	-	0	ID=cds563;Parent=gene574;Dbxref=InterPro:IPR015414,UniProtKB/TrEMBL:Q7CGC5,NCBI_GP:CAL19254.1;Name=CAL19254.1;Note=Similar to Escherichia coli hypothetical protein YqjA SW:YQJA_ECOLI (P42614) (220 aa) fasta scores: E(): 0%2C78.6%25 id in 215 aa%2C and to Escherichia coli hypothetical protein YghB SW:YGHB_ECOLI (P33196) (219 aa) fasta scores: E(): 0%2C 63.7%25 id in 215 aa. Similar to YPO0680 (63.8%25 identity in 218 aa overlap).;gbkey=CDS;gene=yqjA;inference=protein motif:TMHMM:2.0;product=putative DedA-family membrane protein;protein_id=CAL19254.1;transl_table=11
AL590842.1	EMBL	sequence_feature	618006	618071	.	-	.	ID=id1398;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yqjA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	618072	618554	.	-	.	ID=id1399;Note=Pfam match to entry PF00597 DedA%2C DedA family%2C score 210.60%2C E-value 2.3e-59;gbkey=misc_feature;gene=yqjA;inference=protein motif:PF00597
AL590842.1	EMBL	sequence_feature	618117	618182	.	-	.	ID=id1400;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yqjA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	618198	618263	.	-	.	ID=id1401;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yqjA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	618417	618482	.	-	.	ID=id1402;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yqjA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	618919	619473	.	-	.	ID=gene575;Name=YPO0575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0575
AL590842.1	EMBL	CDS	618919	619473	.	-	0	ID=cds564;Parent=gene575;Dbxref=UniProtKB/TrEMBL:Q0WJ91,NCBI_GP:CAL19255.1;Name=CAL19255.1;Note=Doubtful CDS. No significant database matches;gbkey=CDS;product=putative lipoprotein;protein_id=CAL19255.1;transl_table=11
AL590842.1	EMBL	sequence_feature	619414	619446	.	-	.	ID=id1403;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	619701	620495	.	-	.	ID=gene576;Name=exuR;gbkey=Gene;gene=exuR;gene_biotype=protein_coding;locus_tag=YPO0576
AL590842.1	EMBL	CDS	619701	620495	.	-	0	ID=cds565;Parent=gene576;Dbxref=GOA:Q0WJ90,InterPro:IPR000524,InterPro:IPR008920,InterPro:IPR011711,InterPro:IPR011991,UniProtKB/TrEMBL:Q0WJ90,NCBI_GP:CAL19256.1;Name=CAL19256.1;Note=Similar to Erwinia chrysanthemi exu regulon transcriptional regulator ExuR SW:EXUR_ERWCH (Q9X9E0) (259 aa) fasta scores: E(): 0%2C 86.3%25 id in 256 aa%2C and to Escherichia coli exu regulon transcriptional regulator ExuR SW:EXUR_ECOLI (P42608) (258 aa) fasta scores: E(): 0%2C 75.2%25 id in 258 aa;gbkey=CDS;gene=exuR;product=exu regulon transcriptional regulator;protein_id=CAL19256.1;transl_table=11
AL590842.1	EMBL	sequence_feature	620280	620459	.	-	.	ID=id1404;Note=Pfam match to entry PF00392 gntR%2C Bacterial regulatory proteins%2C gntR family%2C score 100.50%2C E-value 1.6e-29;gbkey=misc_feature;gene=exuR;inference=protein motif:PF00392
AL590842.1	EMBL	sequence_feature	620328	620402	.	-	.	ID=id1405;Note=PS00043 Bacterial regulatory proteins%2C gntR family signature.;gbkey=misc_feature;gene=exuR;inference=protein motif:ProSite:PS00043
AL590842.1	EMBL	gene	620758	622062	.	-	.	ID=gene577;Name=exuT;gbkey=Gene;gene=exuT;gene_biotype=protein_coding;locus_tag=YPO0577
AL590842.1	EMBL	CDS	620758	622062	.	-	0	ID=cds566;Parent=gene577;Dbxref=GOA:Q7CGC6,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q7CGC6,NCBI_GP:CAL19257.1;Name=CAL19257.1;Note=Similar to Erwinia chrysanthemi ExuT protein TR:P94774 (EMBL:U86689) (345 aa) fasta scores: E(): 0%2C87.0%25 id in 330 aa%2C and to the C-terminus region of the Escherichia coli hexuronate transporter ExuT SW:EXUT_ECOLI (P42609) (472 aa) fasta scores: E(): 0%2C 84.1%25 id in 428 aa. The E. coli ExuT N-terminal region may be extended due to an alternative upstream translational start.;gbkey=CDS;gene=exuT;inference=similar to sequence:INSDC:U86689;product=ExuT transport protein;protein_id=CAL19257.1;transl_table=11
AL590842.1	EMBL	sequence_feature	620809	622020	.	-	.	ID=id1406;Note=Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporter%2C score -101.60%2C E-value 0.003;gbkey=misc_feature;gene=exuT;inference=protein motif:PF00083
AL590842.1	EMBL	sequence_feature	620827	620892	.	-	.	ID=id1407;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=exuT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	620908	620973	.	-	.	ID=id1408;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=exuT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	621013	621078	.	-	.	ID=id1409;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=exuT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	621094	621159	.	-	.	ID=id1410;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=exuT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	621199	621264	.	-	.	ID=id1411;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=exuT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	621310	621375	.	-	.	ID=id1412;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=exuT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	621505	621570	.	-	.	ID=id1413;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=exuT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	621586	621651	.	-	.	ID=id1414;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=exuT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	621757	621822	.	-	.	ID=id1415;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=exuT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	621853	621918	.	-	.	ID=id1416;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=exuT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	621982	622032	.	-	.	ID=id1417;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=exuT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	622106	622276	.	+	.	ID=gene578;Name=YPO0578;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0578
AL590842.1	EMBL	CDS	622106	622276	.	+	0	ID=cds567;Parent=gene578;Dbxref=UniProtKB/TrEMBL:Q74RW6,NCBI_GP:CAL19258.1;Name=CAL19258.1;Note=Doubtful CDS with no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19258.1;transl_table=11
AL590842.1	EMBL	sequence_feature	622148	622207	.	+	.	ID=id1418;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	622807	624216	.	+	.	ID=gene579;Name=uxaC;gbkey=Gene;gene=uxaC;gene_biotype=protein_coding;locus_tag=YPO0579
AL590842.1	EMBL	CDS	622807	624216	.	+	0	ID=cds568;Parent=gene579;Dbxref=GOA:Q8ZIC6,InterPro:IPR003766,InterPro:IPR023177,NCBI_GP:CAL19259.1;Name=CAL19259.1;Note=Similar to Escherichia coli uronate isomerase UxaC SW:UXAC_ECOLI (P42607) (470 aa) fasta scores: E(): 0%2C 83.2%25 id in 469 aa%2C and to Bacillus subtilis uronate isomerase UxaC SW:UXAC_BACSU (O34808) (473 aa) fasta scores: E(): 0%2C52.1%25 id in 468 aa;gbkey=CDS;gene=uxaC;product=uronate isomerase;protein_id=CAL19259.1;transl_table=11
AL590842.1	EMBL	gene	624415	625866	.	+	.	ID=gene580;Name=uxaB;gbkey=Gene;gene=uxaB;gene_biotype=protein_coding;locus_tag=YPO0580
AL590842.1	EMBL	CDS	624415	625866	.	+	0	ID=cds569;Parent=gene580;Dbxref=GOA:Q8ZIC5,InterPro:IPR008927,InterPro:IPR013118,InterPro:IPR013131,InterPro:IPR013328,InterPro:IPR016040,InterPro:IPR023668,NCBI_GP:CAL19260.1;Name=CAL19260.1;Note=Similar to Escherichia coli altronate oxidoreductase UxaB SW:UXAB_ECOLI (P24214) (483 aa) fasta scores: E(): 0%2C72.3%25 id in 481 aa%2C and to Bacillus subtilis hypothetical altronate oxidoreductase YjmI TR:O34354 (EMBL:AF015825) (480 aa) fasta scores: E(): 0%2C 45.1%25 id in 483 aa;gbkey=CDS;gene=uxaB;inference=similar to sequence:INSDC:AF015825;product=altronate oxidoreductase;protein_id=CAL19260.1;transl_table=11
AL590842.1	EMBL	sequence_feature	624460	625722	.	+	.	ID=id1419;Note=Pfam match to entry PF01232 Mannitol_dh%2C Mannitol dehydrogenase%2C score 440.90%2C E-value 7.7e-129;gbkey=misc_feature;gene=uxaB;inference=protein motif:PF01232
AL590842.1	EMBL	gene	625877	627367	.	+	.	ID=gene581;Name=uxaA;gbkey=Gene;gene=uxaA;gene_biotype=protein_coding;locus_tag=YPO0581
AL590842.1	EMBL	CDS	625877	627367	.	+	0	ID=cds570;Parent=gene581;Dbxref=GOA:Q7CGC7,InterPro:IPR007392,InterPro:IPR013974,UniProtKB/TrEMBL:Q7CGC7,NCBI_GP:CAL19261.1;Name=CAL19261.1;Note=Similar to Escherichia coli altronate hydrolase UxaA SW:UXAA_ECOLI (P42604) (495 aa) fasta scores: E(): 0%2C 78.8%25 id in 496 aa%2C and to Bacillus subtilis altronate hydrolase SW:UXAA_BACSU (O34673) (497 aa) fasta scores: E(): 0%2C 58.8%25 id in 497 aa;gbkey=CDS;gene=uxaA;product=altronate hydrolase;protein_id=CAL19261.1;transl_table=11
AL590842.1	EMBL	gene	627520	628050	.	+	.	ID=gene582;Name=YPO0582;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0582
AL590842.1	EMBL	CDS	627520	628050	.	+	0	ID=cds571;Parent=gene582;Dbxref=InterPro:IPR019629,InterPro:IPR026267,UniProtKB/TrEMBL:Q7CGC8,NCBI_GP:CAL19262.1;Name=CAL19262.1;Note=Similar to Escherichia coli hypothetical protein YgjV SW:YGJV_ECOLI (P42603) (183 aa) fasta scores: E(): 0%2C65.5%25 id in 174 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL19262.1;transl_table=11
AL590842.1	EMBL	sequence_feature	627529	627588	.	+	.	ID=id1420;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	627625	627693	.	+	.	ID=id1421;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	627736	627789	.	+	.	ID=id1422;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	627808	627861	.	+	.	ID=id1423;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	627904	627972	.	+	.	ID=id1424;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	repeat_region	628060	628771	.	-	.	ID=id1425;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	628168	628626	.	-	.	ID=gene583;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO0583
AL590842.1	EMBL	CDS	628168	628626	.	-	0	ID=cds572;Parent=gene583;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL19263.1;Name=CAL19263.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL19263.1;transl_table=11
AL590842.1	EMBL	sequence_feature	628261	628572	.	-	.	ID=id1426;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	628827	630095	.	-	.	ID=gene584;Name=YPO0584;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0584
AL590842.1	EMBL	CDS	628827	630095	.	-	0	ID=cds573;Parent=gene584;Dbxref=GOA:Q0WJ82,InterPro:IPR001991,InterPro:IPR023025,NCBI_GP:CAL19264.1;Name=CAL19264.1;Note=Similar to Escherichia coli hypothetical protein YgjU SW:YGJU_ECOLI (P42602) (414 aa) fasta scores: E(): 0%2C77.1%25 id in 407 aa%2C and to Vibrio cholerae putative sodium/dicarboxylate symporter VCA0036 TR:Q9KNC9 (EMBL:AE004347) (405 aa) fasta scores: E(): 0%2C 70.3%25 id in 400 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004347;product=putative symporter protein;protein_id=CAL19264.1;transl_table=11
AL590842.1	EMBL	sequence_feature	628893	630035	.	-	.	ID=id1427;Note=Pfam match to entry PF00375 SDF%2CSodium:dicarboxylate symporter family%2C score 509.20%2CE-value 3e-149;gbkey=misc_feature;inference=protein motif:PF00375
AL590842.1	EMBL	sequence_feature	629031	629096	.	-	.	ID=id1428;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	629133	629165	.	-	.	ID=id1429;Note=PS00435 Peroxidases proximal heme-ligand signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00435
AL590842.1	EMBL	sequence_feature	629157	629222	.	-	.	ID=id1430;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	629376	629441	.	-	.	ID=id1431;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	629472	629537	.	-	.	ID=id1432;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	629598	629663	.	-	.	ID=id1433;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	629769	629834	.	-	.	ID=id1434;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	629874	629939	.	-	.	ID=id1435;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	629955	630020	.	-	.	ID=id1436;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	630618	631613	.	-	.	ID=gene585;Name=YPO0585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0585
AL590842.1	EMBL	CDS	630618	631613	.	-	0	ID=cds574;Parent=gene585;Dbxref=GOA:Q74RW1,InterPro:IPR000683,InterPro:IPR016040,UniProtKB/TrEMBL:Q74RW1,NCBI_GP:CAL19265.1;Name=CAL19265.1;Note=Similar to Escherichia coli hypothetical protein YgjR SW:YGJR_ECOLI (P42599) (328 aa) fasta scores: E(): 0%2C73.5%25 id in 325 aa%2C and to Bacillus subtilis hypothetical protein YulF SW:YULF_BACSU (O05265) (328 aa) fasta scores: E(): 0%2C 46.3%25 id in 326 aa;gbkey=CDS;product=putative MocA-family oxidoreductase;protein_id=CAL19265.1;transl_table=11
AL590842.1	EMBL	sequence_feature	630969	631610	.	-	.	ID=id1437;Note=Pfam match to entry PF01408 GFO_IDH_MocA%2COxidoreductase family%2C score 136.50%2C E-value 4.7e-37;gbkey=misc_feature;inference=protein motif:PF01408
AL590842.1	EMBL	gene	631816	632325	.	-	.	ID=gene586;Name=YPO0586;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0586
AL590842.1	EMBL	CDS	631816	632325	.	-	0	ID=cds575;Parent=gene586;Dbxref=GOA:Q7CGD0,InterPro:IPR002725,UniProtKB/TrEMBL:Q7CGD0,NCBI_GP:CAL19266.1;Name=CAL19266.1;Note=Similar to Escherichia coli hypothetical protein YgjP SW:YGJP_ECOLI (P42597) (179 aa) fasta scores: E(): 0%2C77.8%25 id in 162 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0560 TR:AAG03949 (EMBL:AE004492) (162 aa) fasta scores: E(): 0%2C 67.1%25 id in 158 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004492;product=conserved hypothetical protein;protein_id=CAL19266.1;transl_table=11
AL590842.1	EMBL	gene	632564	635548	.	-	.	ID=gene587;Name=YPO0587;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0587
AL590842.1	EMBL	CDS	632564	635548	.	-	0	ID=cds576;Parent=gene587;Dbxref=GOA:Q9F286,InterPro:IPR004899,InterPro:IPR005546,InterPro:IPR006315,InterPro:IPR011050,InterPro:IPR012332,UniProtKB/TrEMBL:Q9F286,NCBI_GP:CAL19267.1;Name=CAL19267.1;Note=Previously sequenced%2C Yersinia pestis putative autotransporter protein YapG TR:CAC14226 (EMBL:AJ277630). Similar to Salmonella typhimurium pathogenicity island (SPI-3) protein MisL TR:Q9Z625 (EMBL:AF106566) (955 aa) fasta scores: E(): 0%2C 29.7%25 id in 966 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ277630;product=putative autotransporter protein;protein_id=CAL19267.1;transl_table=11
AL590842.1	EMBL	gene	636017	637204	.	+	.	ID=gene588;Name=YPO0588;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0588
AL590842.1	EMBL	CDS	636017	637204	.	+	0	ID=cds577;Parent=gene588;Dbxref=GOA:Q0WJ78,InterPro:IPR002052,InterPro:IPR007848,InterPro:IPR017237,InterPro:IPR029063,NCBI_GP:CAL19268.1;Name=CAL19268.1;Note=Similar to Escherichia coli putative ribosomal RNA small subunit methyltransferase D YgjO SW:RSMD_ECOLI (P42596) (378 aa) fasta scores: E(): 0%2C 63.1%25 id in 379 aa%2Cand to Vibrio cholerae hypothetical protein VC2297 TR:Q9KPR9 (EMBL:AE004300) (416 aa) fasta scores: E(): 0%2C41.3%25 id in 378 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004300;product=putative methyltransferase;protein_id=CAL19268.1;transl_table=11
AL590842.1	EMBL	sequence_feature	636923	636943	.	+	.	ID=id1438;Note=PS00092 N-6 Adenine-specific DNA methylases signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00092
AL590842.1	EMBL	gene	637320	639341	.	-	.	ID=gene589;Name=fadH;gbkey=Gene;gene=fadH;gene_biotype=protein_coding;gene_synonym=fadH1;locus_tag=YPO0589
AL590842.1	EMBL	CDS	637320	639341	.	-	0	ID=cds578;Parent=gene589;Dbxref=GOA:Q0WJ77,InterPro:IPR001155,InterPro:IPR013027,InterPro:IPR013785,InterPro:IPR023753,UniProtKB/TrEMBL:Q0WJ77,NCBI_GP:CAL19269.1;Name=CAL19269.1;Note=Similar to Escherichia coli 2%2C4-dienoyl-CoA reductase [NADPH] FadH SW:FADH_ECOLI (P42593) (671 aa) fasta scores: E(): 0%2C 72.7%25 id in 671 aa%2C and to Pseudomonas aeruginosa 2%2C4-dienoyl-CoA reductase FadH1 TR:AAG06480 (EMBL:AE004733) (679 aa) fasta scores: E(): 0%2C66.3%25 id in 670 aa;gbkey=CDS;gene=fadH;inference=similar to sequence:INSDC:AE004733;product=2%2C4-dienoyl-CoA reductase;protein_id=CAL19269.1;transl_table=11
AL590842.1	EMBL	sequence_feature	638346	639326	.	-	.	ID=id1439;Note=Pfam match to entry PF00724 oxidored_FMN%2CNADH:flavin oxidoreductase / NADH oxidase family%2C score 440.20%2C E-value 1.8e-128;gbkey=misc_feature;gene=fadH;inference=protein motif:PF00724
AL590842.1	EMBL	sequence_feature	639341	698939	.	-	.	ID=id1440;Note=Possible pathogenicity island%2C PPI-1. Shows some characteristics of a pathogenicity island. Contains homologues of pathogenicity island proteins%2C regulators%2Cresistance proteins%2C eukaryotic proteins etc. and is situated proximal to a tRNA;gbkey=misc_feature
AL590842.1	EMBL	gene	639554	640123	.	-	.	ID=gene590;Name=hdeD;gbkey=Gene;gene=hdeD;gene_biotype=protein_coding;locus_tag=YPO0590
AL590842.1	EMBL	CDS	639554	640123	.	-	0	ID=cds579;Parent=gene590;Dbxref=GOA:Q7CGD2,InterPro:IPR005325,InterPro:IPR006187,UniProtKB/TrEMBL:Q7CGD2,NCBI_GP:CAL19270.1;Name=CAL19270.1;Note=Similar to Escherichia coli H-NS regulated protein HdeD SW:HDED_ECOLI (P26603) (190 aa) fasta scores: E(): 4.1e-30%2C 46.2%25 id in 186 aa%2C and to Escherichia coli virulence factor homologue MviN SW:MVIN_ECOLI (P75932) (511 aa) fasta scores: E(): 0.35%2C 27.5%25 id in 131 aa;gbkey=CDS;gene=hdeD;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL19270.1;transl_table=11
AL590842.1	EMBL	sequence_feature	639566	639631	.	-	.	ID=id1441;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=hdeD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	639647	639712	.	-	.	ID=id1442;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=hdeD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	639752	639817	.	-	.	ID=id1443;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=hdeD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	639830	639895	.	-	.	ID=id1444;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=hdeD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	639917	639982	.	-	.	ID=id1445;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=hdeD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	639995	640060	.	-	.	ID=id1446;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=hdeD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	640219	640452	.	+	.	ID=gene591;Name=YPO0591;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0591
AL590842.1	EMBL	CDS	640219	640452	.	+	0	ID=cds580;Parent=gene591;Dbxref=UniProtKB/TrEMBL:Q74RV5,NCBI_GP:CAL19271.1;Name=CAL19271.1;Note=No significant database hits to the full length CDS. Weakly similar to internal region of Vaccinia virus hypothetical protein A ORF N SW:YVAN_VACCC (P20523) (70 aa) fasta scores: E(): 9.6%2C 27.5%25 id in 40 aa;gbkey=CDS;product=hypothetical protein;protein_id=CAL19271.1;transl_table=11
AL590842.1	EMBL	gene	640514	642013	.	-	.	ID=gene592;Name=YPO0592;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0592
AL590842.1	EMBL	CDS	640514	642013	.	-	0	ID=cds581;Parent=gene592;Dbxref=GOA:Q7CGD3,InterPro:IPR000719,InterPro:IPR008266,InterPro:IPR011009,UniProtKB/TrEMBL:Q7CGD3,NCBI_GP:CAL19272.1;Name=CAL19272.1;Note=Internal region of the CDS similar to internal regions of Streptomyces coelicolor protein serine/threonine kinase PkaD TR:Q9L0I0 (EMBL:AL161755) (599 aa) fasta scores: E(): 0.00027%2C 29.4%25 id in 211 aa%2C and to Dictyostelium discoideum RAC-family serine/threonine kinase homologue DagA SW:KRAC_DICDI (P54644) (444 aa) fasta scores: E(): 0.0082%2C 23.8%25 id in 323 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL161755;product=putative kinase protein;protein_id=CAL19272.1;transl_table=11
AL590842.1	EMBL	sequence_feature	641363	641530	.	-	.	ID=id1447;Note=Pfam match to entry PF00069 pkinase%2C Eukaryotic protein kinase domain%2C score 16.70%2C E-value 0.0016;gbkey=misc_feature;inference=protein motif:PF00069
AL590842.1	EMBL	sequence_feature	641477	641515	.	-	.	ID=id1448;Note=PS00109 Tyrosine protein kinases specific active-site signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00109
AL590842.1	EMBL	gene	642045	643778	.	-	.	ID=gene593;Name=YPO0593;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0593
AL590842.1	EMBL	CDS	642045	643778	.	-	0	ID=cds582;Parent=gene593;Dbxref=GOA:Q7CGD4,InterPro:IPR001932,UniProtKB/TrEMBL:Q7CGD4,NCBI_GP:CAL19273.1;Name=CAL19273.1;Note=Poor database hits. Internal region of the CDS similar to internal region of Saccharomyces cerevisiae hypothetical protein YAR002w SW:YAH2_YEAST (P39705) (539 aa) fasta scores: E(): 0.21%2C 22.3%25 id in 224 aa;gbkey=CDS;product=hypothetical protein;protein_id=CAL19273.1;transl_table=11
AL590842.1	EMBL	gene	643834	644817	.	-	.	ID=gene594;Name=YPO0594;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0594
AL590842.1	EMBL	CDS	643834	644817	.	-	0	ID=cds583;Parent=gene594;Dbxref=InterPro:IPR002035,InterPro:IPR028274,UniProtKB/TrEMBL:Q7CGD5,NCBI_GP:CAL19274.1;Name=CAL19274.1;Note=N-terminus of the CDS is similar to Serratia marcescens plasmid (R478) encoded protein TerY TR:P75011 (EMBL:U49054) (197 aa) fasta scores: E(): 3.6e-22%2C 38.0%25 id in 187 aa%2C and to Escherichia coli hypothetical protein TR:P76396 (EMBL:AE000297) (219 aa) fasta scores: E(): 3.1e-11%2C 28.0%25 id in 193 aa;gbkey=CDS;inference=similar to sequence:INSDC:U49054;product=conserved hypothetical protein;protein_id=CAL19274.1;transl_table=11
AL590842.1	EMBL	sequence_feature	644293	644805	.	-	.	ID=id1449;Note=Pfam match to entry PF00092 vwa%2C von Willebrand factor type A domain%2C score 8.10%2C E-value 0.00031;gbkey=misc_feature;inference=protein motif:PF00092
AL590842.1	EMBL	gene	644919	645557	.	-	.	ID=gene595;Name=YPO0595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0595
AL590842.1	EMBL	CDS	644919	645557	.	-	0	ID=cds584;Parent=gene595;Dbxref=InterPro:IPR002035,InterPro:IPR011392,UniProtKB/TrEMBL:Q0WJ71,NCBI_GP:CAL19275.1;Name=CAL19275.1;Note=Similar to Serratia marcescens plasmid (R478) encoded%2C possible tellurium resistance protein TerY TR:P75011 (EMBL:U49054) (197 aa) fasta scores: E(): 8e-32%2C45.3%25 id in 201 aa%2C and to Escherichia coli hypothetical protein TR:P76396 (EMBL:AE000297) (219 aa) fasta scores: E(): 3.3e-09%2C 33.5%25 id in 194 aa;gbkey=CDS;inference=similar to sequence:INSDC:U49054;product=conserved hypothetical protein;protein_id=CAL19275.1;transl_table=11
AL590842.1	EMBL	sequence_feature	645015	645545	.	-	.	ID=id1450;Note=Pfam match to entry PF00092 vwa%2C von Willebrand factor type A domain%2C score -7.30%2C E-value 0.0034;gbkey=misc_feature;inference=protein motif:PF00092
AL590842.1	EMBL	gene	645559	646200	.	-	.	ID=gene596;Name=terX;gbkey=Gene;gene=terX;gene_biotype=protein_coding;locus_tag=YPO0596
AL590842.1	EMBL	CDS	645559	646200	.	-	0	ID=cds585;Parent=gene596;Dbxref=GOA:Q7CGD6,InterPro:IPR003325,UniProtKB/TrEMBL:Q7CGD6,NCBI_GP:CAL19276.1;Name=CAL19276.1;Note=Similar to Serratia marcescens plasmid (R478) encoded%2C possible tellurium resistance protein TerX SW:TERX_SERMA (P75012) (213 aa) fasta scores: E(): 0%2C 86.9%25 id in 213 aa%2C and to Proteus mirabilis TerD TR:Q9S402 (EMBL:AF168355) (192 aa) fasta scores: E(): 1.1e-16%2C 41.2%25 id in 199 aa;gbkey=CDS;gene=terX;inference=similar to sequence:INSDC:AF168355;product=putative tellurium resistance protein;protein_id=CAL19276.1;transl_table=11
AL590842.1	EMBL	sequence_feature	645562	645954	.	-	.	ID=id1451;Note=Pfam match to entry PF02342 TerD%2C %2C score 175.70%2CE-value 7.8e-49;gbkey=misc_feature;gene=terX;inference=protein motif:PF02342
AL590842.1	EMBL	gene	646233	646871	.	-	.	ID=gene597;Name=terY;gbkey=Gene;gene=terY;gene_biotype=protein_coding;locus_tag=YPO0597
AL590842.1	EMBL	CDS	646233	646871	.	-	0	ID=cds586;Parent=gene597;Dbxref=InterPro:IPR002035,InterPro:IPR011392,UniProtKB/TrEMBL:Q7CGD7,NCBI_GP:CAL19277.1;Name=CAL19277.1;Note=Similar to Serratia marcescens plasmid (R478) encoded%2C possible tellurium resistance protein TerY TR:P75011 (EMBL:U49054) (197 aa) fasta scores: E(): 0%2C85.3%25 id in 197 aa%2C and to Escherichia coli hypothetical protein TR:P76396 (EMBL:AE000297) (219 aa) fasta scores: E(): 9.9e-12%2C 29.8%25 id in 181 aa;gbkey=CDS;gene=terY;inference=similar to sequence:INSDC:U49054;product=putative tellurium resistance protein;protein_id=CAL19277.1;transl_table=11
AL590842.1	EMBL	sequence_feature	646341	646859	.	-	.	ID=id1452;Note=Pfam match to entry PF00092 vwa%2C von Willebrand factor type A domain%2C score -10.80%2C E-value 0.0059;gbkey=misc_feature;gene=terY;inference=protein motif:PF00092
AL590842.1	EMBL	gene	647586	649274	.	+	.	ID=gene598;Name=YPO0598;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0598
AL590842.1	EMBL	CDS	647586	649274	.	+	0	ID=cds587;Parent=gene598;Dbxref=GOA:Q7CGD8,InterPro:IPR005565,InterPro:IPR013686,InterPro:IPR027282,UniProtKB/TrEMBL:Q7CGD8,NCBI_GP:CAL19278.1;Name=CAL19278.1;Note=Similar to Serratia marcescens secreted hemolysin activator protein precursor ShlB SW:HLYB_SERMA (P15321) (557 aa) fasta scores: E(): 7.3e-25%2C 26.7%25 id in 502 aa%2Cand to Xylella fastidiosa outer membrane putative hemolysin activator protein XF2550 TR:Q9PAG8 (EMBL:AE004062) (597 aa) fasta scores: E(): 0%2C 43.9%25 id in 560 aa. Similar to termini of YPO2491 (81.5%25 identity in 561 aa overlap) and almost identical to YPO0603 (98.8%25 identity in 243 aa overlap)%2C possible gene remenant.;gbkey=CDS;inference=similar to sequence:INSDC:AE004062;product=putative hemolysin activator protein;protein_id=CAL19278.1;transl_table=11
AL590842.1	EMBL	gene	649319	659206	.	+	.	ID=gene599;Name=YPO0599;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0599
AL590842.1	EMBL	CDS	649319	659206	.	+	0	ID=cds588;Parent=gene599;Dbxref=InterPro:IPR006914,InterPro:IPR008638,InterPro:IPR010069,InterPro:IPR011050,InterPro:IPR012334,InterPro:IPR024973,InterPro:IPR025157,UniProtKB/TrEMBL:Q7CGD9,NCBI_GP:CAL19279.1;Name=CAL19279.1;Note=Similar to Bordetella bronchiseptica hemagglutinin/adhesin FhaB TR:Q9JP78 (EMBL:AF111796) (3634 aa) fasta scores: E(): 0%2C 23.4%25 id in 3457 aa. N-terminus similar to Serratia marcescens hemolysin precursor ShlA SW:HLYA_SERMA (P15320) (1608 aa) fasta scores: E(): 1.3e-25%2C 23.3%25 id in 1657 aa. Similar to YPO2490 (54.0%25 identity in 3280 aa overlap).;gbkey=CDS;inference=similar to sequence:INSDC:AF111796;product=putative adhesin;protein_id=CAL19279.1;transl_table=11
AL590842.1	EMBL	sequence_feature	651038	651061	.	+	.	ID=id1453;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	659203	659436	.	+	.	ID=gene600;Name=YPO0600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0600
AL590842.1	EMBL	CDS	659203	659436	.	+	0	ID=cds589;Parent=gene600;Dbxref=UniProtKB/TrEMBL:Q74RU7,NCBI_GP:CAL19280.1;Name=CAL19280.1;Note=Poor database matches. Doubtful CDS;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL19280.1;transl_table=11
AL590842.1	EMBL	sequence_feature	659221	659289	.	+	.	ID=id1454;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	659365	659418	.	+	.	ID=id1455;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	659702	659929	.	+	.	ID=gene601;Name=YPO0601;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0601
AL590842.1	EMBL	CDS	659702	659929	.	+	0	ID=cds590;Parent=gene601;Dbxref=UniProtKB/TrEMBL:Q7CGE0,NCBI_GP:CAL19281.1;Name=CAL19281.1;Note=Poor database hits. Weakly similar to N-terminal region of Plasmodium falciparum PFEMP1 Var protein TR:Q9NHJ1 (EMBL:AF221799) (109 aa) fasta scores: E(): 2.7%2C31.3%25 id in 67 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF221799;product=hypothetical protein;protein_id=CAL19281.1;transl_table=11
AL590842.1	EMBL	gene	660010	660441	.	+	.	ID=gene602;Name=YPO0602;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0602
AL590842.1	EMBL	CDS	660010	660441	.	+	0	ID=cds591;Parent=gene602;Dbxref=InterPro:IPR028952,UniProtKB/TrEMBL:Q7CGE1,NCBI_GP:CAL19282.1;Name=CAL19282.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19282.1;transl_table=11
AL590842.1	EMBL	gene	660498	661454	.	+	.	ID=gene603;Name=YPO0603;end_range=661454,.;gbkey=Gene;gene_biotype=other;locus_tag=YPO0603;partial=true;start_range=.,660498
AL590842.1	EMBL	mRNA	660498	661454	.	+	.	ID=rna10;Parent=gene603;Note=Probable gene remanent%2C similar to internal regions of Xylella fastidiosa hemagglutinin-like secreted protein XF0889 TR:Q9PEY9 (EMBL:AE003928) (3282 aa) fasta scores: E(): 4.5e-10%2C 30.6%25 id in 245 aa%2C and Neisseria meningitidis hemagglutinin/hemolysin-related protein NMB0493 TR:Q9K0T0 (EMBL:AE002405) (2703 aa) fasta scores: E(): 1e-12%2C 40.8%25 id in 157 aa. Almost identical to YPO0599 (98.8%25 identity in 243 aa overlap). Possibly arose from partial duplication of upstream CDS%2C YPO0599.%3B~was marked partial;end_range=661454,.;gbkey=mRNA;inference=similar to sequence:INSDC:AE003928;partial=true;product=putative hemagglutinin/hemolysin-related protein (partial);start_range=.,660498
AL590842.1	EMBL	exon	660498	661229	.	+	.	ID=id1456;Parent=rna10;Note=Probable gene remanent%2C similar to internal regions of Xylella fastidiosa hemagglutinin-like secreted protein XF0889 TR:Q9PEY9 (EMBL:AE003928) (3282 aa) fasta scores: E(): 4.5e-10%2C 30.6%25 id in 245 aa%2C and Neisseria meningitidis hemagglutinin/hemolysin-related protein NMB0493 TR:Q9K0T0 (EMBL:AE002405) (2703 aa) fasta scores: E(): 1e-12%2C 40.8%25 id in 157 aa. Almost identical to YPO0599 (98.8%25 identity in 243 aa overlap). Possibly arose from partial duplication of upstream CDS%2C YPO0599.%3B~was marked partial;gbkey=mRNA;inference=similar to sequence:INSDC:AE003928;partial=true;product=putative hemagglutinin/hemolysin-related protein (partial);start_range=.,660498
AL590842.1	EMBL	exon	661230	661454	.	+	.	ID=id1457;Parent=rna10;Note=Probable gene remanent%2C similar to internal regions of Xylella fastidiosa hemagglutinin-like secreted protein XF0889 TR:Q9PEY9 (EMBL:AE003928) (3282 aa) fasta scores: E(): 4.5e-10%2C 30.6%25 id in 245 aa%2C and Neisseria meningitidis hemagglutinin/hemolysin-related protein NMB0493 TR:Q9K0T0 (EMBL:AE002405) (2703 aa) fasta scores: E(): 1e-12%2C 40.8%25 id in 157 aa. Almost identical to YPO0599 (98.8%25 identity in 243 aa overlap). Possibly arose from partial duplication of upstream CDS%2C YPO0599.%3B~was marked partial;end_range=661454,.;gbkey=mRNA;inference=similar to sequence:INSDC:AE003928;partial=true;product=putative hemagglutinin/hemolysin-related protein (partial)
AL590842.1	EMBL	gene	661725	664010	.	-	.	ID=gene604;Name=yapF;gbkey=Gene;gene=yapF;gene_biotype=protein_coding;locus_tag=YPO0606
AL590842.1	EMBL	CDS	661725	664010	.	-	0	ID=cds592;Parent=gene604;Dbxref=InterPro:IPR005546,UniProtKB/TrEMBL:Q9F287,NCBI_GP:CAL19283.1;Name=CAL19283.1;Note=Previously sequenced%2C Yersinia pestis putative autotransporter protein YapF TR:CAC14225 (EMBL:AJ277629). Similar to Acidovorax avenae subsp. avenae flagellin N1141-FLA1 TR:BAB16756 (EMBL:AB040139) (492 aa) fasta scores: E(): 0.0011%2C 20.8%25 id in 476 aa;gbkey=CDS;gene=yapF;inference=similar to sequence:INSDC:AJ277629;product=putative autotransporter protein;protein_id=CAL19283.1;transl_table=11
AL590842.1	EMBL	gene	664070	665065	.	-	.	ID=gene605;Name=YPO0607;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0607
AL590842.1	EMBL	CDS	664070	665065	.	-	0	ID=cds593;Parent=gene605;Dbxref=InterPro:IPR025737,UniProtKB/TrEMBL:Q74RU2,NCBI_GP:CAL19284.1;Name=CAL19284.1;Note=Similar to internal regions of Erwinia amylovora zinc-binding metalloprotease PrtA TR:Q9XB65 (EMBL:Y19002) (478 aa) fasta scores: E(): 6.6%2C 21.6%25 id in 264 aa%2C and to Pseudomonas aeruginosa pyridoxal phosphate biosynthetic protein PdxJ TR:AAG04162 (EMBL:AE004512) (248 aa) fasta scores: E(): 4.3%2C 24.0%25 id in 196 aa;gbkey=CDS;inference=similar to sequence:INSDC:Y19002;product=putative exported protein;protein_id=CAL19284.1;transl_table=11
AL590842.1	EMBL	gene	665167	666546	.	-	.	ID=gene606;Name=YPO0608;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0608
AL590842.1	EMBL	CDS	665167	666546	.	-	0	ID=cds594;Parent=gene606;Dbxref=InterPro:IPR019282,UniProtKB/TrEMBL:Q7CGE3,NCBI_GP:CAL19285.1;Name=CAL19285.1;Note=Poor database matches. Internal region of CDS similar to internal region of Rhizobium meliloti protein involved in the production of beta-(1----2)-glucan%2C NdvB SW:NDVB_RHIME (P20471) (2870 aa) fasta scores: E(): 0.0053%2C23.0%25 id in 343 aa;gbkey=CDS;product=putative membrane protein;protein_id=CAL19285.1;transl_table=11
AL590842.1	EMBL	sequence_feature	666469	666525	.	-	.	ID=id1458;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	666869	667987	.	+	.	ID=gene607;Name=YPO0609;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0609
AL590842.1	EMBL	CDS	666869	667987	.	+	0	ID=cds595;Parent=gene607;Dbxref=GOA:Q7CGE4,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR008995,InterPro:IPR012340,InterPro:IPR013611,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CGE4,NCBI_GP:CAL19286.1;Name=CAL19286.1;Note=Similar to Bacillus firmus maltose transporter ATP-binding protein MalK TR:O87551 (EMBL:AF084104) (366 aa) fasta scores: E(): 0%2C 51.5%25 id in 375 aa%2C and to Klebsiella oxytoca possible ABC transporter protein CymD TR:Q48394 (EMBL:X86014) (376 aa) fasta scores: E(): 0%2C 55.1%25 id in 374 aa. Similar to YPO1720 (53.9%25 identity in 373 aa overlap).;gbkey=CDS;inference=similar to sequence:INSDC:X86014;product=putative transporter ATP-binding protein;protein_id=CAL19286.1;transl_table=11
AL590842.1	EMBL	sequence_feature	666959	667519	.	+	.	ID=id1459;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 170.40%2C E-value 2.9e-47;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	667274	667318	.	+	.	ID=id1460;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	668070	671423	.	+	.	ID=gene608;Name=YPO0610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0610
AL590842.1	EMBL	CDS	668070	671423	.	+	0	ID=cds596;Parent=gene608;Dbxref=GOA:Q7CGE5,InterPro:IPR008928,UniProtKB/TrEMBL:Q7CGE5,NCBI_GP:CAL19287.1;Name=CAL19287.1;Note=Poor database hits ot the full length CDS. Weakly similar to internal regions of Mycoplasma hyopneumoniae membrane protein YX2 TR:Q9KGX7 (EMBL:AF279293) (560 aa) fasta scores: E(): 0.93%2C 20.2%25 id in 465 aa%2C and to Prevotella ruminicola xylanase precursor TR:Q45397 (EMBL:M83379) (584 aa) fasta scores: E(): 3.5%2C 20.3%25 id in 355 aa;gbkey=CDS;inference=similar to sequence:INSDC:M83379;product=hypothetical protein;protein_id=CAL19287.1;transl_table=11
AL590842.1	EMBL	gene	671532	672518	.	+	.	ID=gene609;Name=YPO0611;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0611
AL590842.1	EMBL	CDS	671532	672518	.	+	0	ID=cds597;Parent=gene609;Dbxref=GOA:Q7CGE6,InterPro:IPR000843,InterPro:IPR010982,InterPro:IPR028082,UniProtKB/TrEMBL:Q7CGE6,NCBI_GP:CAL19288.1;Name=CAL19288.1;Note=Similar to Bacillus subtilis catabolite control protein A CcpA SW:CCPA_BACSU (P25144) (334 aa) fasta scores: E(): 2.6e-32%2C 29.8%25 id in 329 aa%2C and to Bacillus subtilis LacI repressor-like protein YjmH TR:Q9JMQ1 (EMBL:AF015825) (333 aa) fasta scores: E(): 0%2C 33.7%25 id in 332 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF015825;product=LacI-family regulatory protein;protein_id=CAL19288.1;transl_table=11
AL590842.1	EMBL	sequence_feature	671532	671615	.	+	.	ID=id1461;Note=Pfam match to entry PF00356 lacI%2C Bacterial regulatory proteins%2C lacI family%2C score 40.60%2C E-value 5.2e-10;gbkey=misc_feature;inference=protein motif:PF00356
AL590842.1	EMBL	sequence_feature	671538	671603	.	+	.	ID=id1462;Note=Predicted helix-turn-helix motif with score 2187 (+6.64 SD) at aa 3-24%2C sequence VTIKDVAKRAKVSISTVSYAIN;gbkey=misc_feature
AL590842.1	EMBL	sequence_feature	671544	671600	.	+	.	ID=id1463;Note=PS00356 Bacterial regulatory proteins%2C lacI family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00356
AL590842.1	EMBL	sequence_feature	671706	672425	.	+	.	ID=id1464;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 98.80%2C E-value 1e-25;gbkey=misc_feature;inference=protein motif:PF00532
AL590842.1	EMBL	gene	672595	673839	.	+	.	ID=gene610;Name=YPO0612;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0612
AL590842.1	EMBL	CDS	672595	673839	.	+	0	ID=cds598;Parent=gene610;Dbxref=GOA:Q7CGE7,InterPro:IPR006059,UniProtKB/TrEMBL:Q7CGE7,NCBI_GP:CAL19289.1;Name=CAL19289.1;Note=Similar to Rhizobium meliloti putative trehalose/maltose binding protein ThuE TR:Q9R9Q7 (EMBL:AF175299) (423 aa) fasta scores: E(): 1.4e-08%2C 23.9%25 id in 427 aa%2C and to Thermotoga maritima hypothetical protein TM1120 TR:Q9X0K4 (EMBL:AE001770) (436 aa) fasta scores: E(): 5.9e-09%2C 22.3%25 id in 452 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF175299;product=putative sugar binding protein;protein_id=CAL19289.1;transl_table=11
AL590842.1	EMBL	sequence_feature	672937	673809	.	+	.	ID=id1465;Note=Pfam match to entry PF01547 SBP_bacterial_1%2CBacterial extracellular solute-binding protein%2C score 47.30%2C E-value 3e-12;gbkey=misc_feature;inference=protein motif:PF01547
AL590842.1	EMBL	gene	673893	674774	.	+	.	ID=gene611;Name=YPO0613;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0613
AL590842.1	EMBL	CDS	673893	674774	.	+	0	ID=cds599;Parent=gene611;Dbxref=GOA:Q7CGE8,InterPro:IPR000515,UniProtKB/TrEMBL:Q7CGE8,NCBI_GP:CAL19290.1;Name=CAL19290.1;Note=Similar to Agrobacterium radiobacter lactose transport system permease protein LacF SW:LACF_AGRRD (P29823) (298 aa) fasta scores: E(): 6.2e-28%2C 33.1%25 id in 287 aa%2C and to Bacillus halodurans possible L-arabinose transport system protein AraP TR:Q9KEF0 (EMBL:AP001510) (316 aa) fasta scores: E(): 3.2e-31%2C 35.9%25 id in 287 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001510;product=putative permease protein;protein_id=CAL19290.1;transl_table=11
AL590842.1	EMBL	sequence_feature	673911	673979	.	+	.	ID=id1466;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	674103	674171	.	+	.	ID=id1467;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	674190	674258	.	+	.	ID=id1468;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	674391	674450	.	+	.	ID=id1469;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	674424	674657	.	+	.	ID=id1470;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 44.50%2C E-value 2.4e-09;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	674427	674513	.	+	.	ID=id1471;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	674511	674579	.	+	.	ID=id1472;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	674676	674744	.	+	.	ID=id1473;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	674774	675592	.	+	.	ID=gene612;Name=YPO0614;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0614
AL590842.1	EMBL	CDS	674774	675592	.	+	0	ID=cds600;Parent=gene612;Dbxref=GOA:Q7CGE9,InterPro:IPR000515,UniProtKB/TrEMBL:Q7CGE9,NCBI_GP:CAL19291.1;Name=CAL19291.1;Note=Similar to Bacillus halodurans possible sugar transport system protein BH1926 TR:Q9KBK0 (EMBL:AP001513) (285 aa) fasta scores: E(): 1.4e-30%2C 35.9%25 id in 273 aa%2Cand to Bacillus halodurans sugar transport system protein BH1866 TR:Q9KBQ9 (EMBL:AP001513) (285 aa) fasta scores: E(): 2.5e-30%2C 34.2%25 id in 269 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001513;product=putative permease;protein_id=CAL19291.1;transl_table=11
AL590842.1	EMBL	sequence_feature	674792	674860	.	+	.	ID=id1474;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	674987	675055	.	+	.	ID=id1475;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	675080	675148	.	+	.	ID=id1476;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	675176	675244	.	+	.	ID=id1477;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	675239	675463	.	+	.	ID=id1478;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 76.00%2C E-value 7.9e-19;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	675242	675328	.	+	.	ID=id1479;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	675305	675373	.	+	.	ID=id1480;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	675488	675547	.	+	.	ID=id1481;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	675622	676104	.	+	.	ID=gene613;Name=YPO0615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0615
AL590842.1	EMBL	CDS	675622	676104	.	+	0	ID=cds601;Parent=gene613;Dbxref=UniProtKB/TrEMBL:Q0WJ54,NCBI_GP:CAL19292.1;Name=CAL19292.1;Note=No significant database matches;gbkey=CDS;product=putative exported protein;protein_id=CAL19292.1;transl_table=11
AL590842.1	EMBL	gene	676155	678338	.	+	.	ID=gene614;Name=YPO0616;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0616
AL590842.1	EMBL	CDS	676155	678338	.	+	0	ID=cds602;Parent=gene614;Dbxref=GOA:Q7CGF0,InterPro:IPR001764,InterPro:IPR002772,InterPro:IPR017853,InterPro:IPR026891,InterPro:IPR026892,UniProtKB/TrEMBL:Q7CGF0,NCBI_GP:CAL19293.1;Name=CAL19293.1;Note=Similar to Flavobacterium meningosepticum beta-glucosidase Bgl TR:O30713 (EMBL:AF015915) (726 aa) fasta scores: E(): 0%2C 38.6%25 id in 730 aa%2C and to Xylella fastidiosa beta-glucosidase XF0439 TR:Q9PG63 (EMBL:AE003894) (740 aa) fasta scores: E(): 0%2C 41.1%25 id in 733 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF015915;product=putative glycosyl hydrolase;protein_id=CAL19293.1;transl_table=11
AL590842.1	EMBL	sequence_feature	676188	677132	.	+	.	ID=id1482;Note=Pfam match to entry PF00933 Glyco_hydro_3%2C Glycosyl hydrolase family 3 N terminal domain%2C score 307.60%2C E-value 1.5e-88;gbkey=misc_feature;inference=protein motif:PF00933
AL590842.1	EMBL	sequence_feature	677241	677750	.	+	.	ID=id1483;Note=Pfam match to entry PF01915 Glyco_hydro_3_C%2CGlycosyl hydrolase family 3 C terminal domain%2C score 93.90%2CE-value 3.3e-24;gbkey=misc_feature;inference=protein motif:PF01915
AL590842.1	EMBL	gene	678402	679928	.	-	.	ID=gene615;Name=YPO0617;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0617
AL590842.1	EMBL	CDS	678402	679928	.	-	0	ID=cds603;Parent=gene615;Dbxref=GOA:Q7CGF1,InterPro:IPR003423,InterPro:IPR028351,UniProtKB/TrEMBL:Q7CGF1,NCBI_GP:CAL19294.1;Name=CAL19294.1;Note=Similar to Pseudomonas aeruginosa outer membrane component of multidrug resistance efflux pump OprJ SW:OPRJ_PSEAE (Q51397) (479 aa) fasta scores: E(): 7.2e-12%2C24.9%25 id in 418 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA4144 TR:AAG07531 (EMBL:AE004831) (471 aa) fasta scores: E(): 2.2e-18%2C 24.9%25 id in 490 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004831;product=putative membrane protein;protein_id=CAL19294.1;transl_table=11
AL590842.1	EMBL	sequence_feature	678411	679016	.	-	.	ID=id1484;Note=Pfam match to entry PF02321 OEP%2C %2C score 90.80%2CE-value 2.7e-23;gbkey=misc_feature;inference=protein motif:PF02321
AL590842.1	EMBL	sequence_feature	679056	679673	.	-	.	ID=id1485;Note=Pfam match to entry PF02321 OEP%2C %2C score 88.80%2CE-value 1.1e-22;gbkey=misc_feature;inference=protein motif:PF02321
AL590842.1	EMBL	sequence_feature	679530	679595	.	-	.	ID=id1486;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	679933	681702	.	-	.	ID=gene616;Name=YPO0618;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0618
AL590842.1	EMBL	CDS	679933	681702	.	-	0	ID=cds604;Parent=gene616;Dbxref=GOA:Q74RT1,InterPro:IPR006726,UniProtKB/TrEMBL:Q74RT1,NCBI_GP:CAL19295.1;Name=CAL19295.1;Note=Similar to Escherichia coli hypothetical transporter YjcQ SW:YJCQ_ECOLI (P32715) (683 aa) fasta scores: E(): 5.5e-22%2C 26.9%25 id in 572 aa%2C and to Streptomyces coelicolor putative integral membrane protein SC9A4.21 TR:CAC01648 (EMBL:AL391072) (645 aa) fasta scores: E(): 0.1%2C 24.7%25 id in 461 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL391072;product=putative membrane protein;protein_id=CAL19295.1;transl_table=11
AL590842.1	EMBL	sequence_feature	680362	680427	.	-	.	ID=id1487;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	680419	680448	.	-	.	ID=id1488;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00339
AL590842.1	EMBL	sequence_feature	680458	680523	.	-	.	ID=id1489;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	680545	680595	.	-	.	ID=id1490;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	680614	680679	.	-	.	ID=id1491;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	681310	681375	.	-	.	ID=id1492;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	681421	681513	.	-	.	ID=id1493;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	681553	681618	.	-	.	ID=id1494;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	681818	682867	.	-	.	ID=gene617;Name=YPO0619;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0619
AL590842.1	EMBL	CDS	681818	682867	.	-	0	ID=cds605;Parent=gene617;Dbxref=GOA:Q7CGF2,InterPro:IPR006143,UniProtKB/TrEMBL:Q7CGF2,NCBI_GP:CAL19296.1;Name=CAL19296.1;Note=Similar to Escherichia coli hypothetical protein YjcR SW:YJCR_ECOLI (P32716) (343 aa) fasta scores: E(): 0%2C38.3%25 id in 332 aa%2C and to Neisseria meningitidis possible fatty acid efflux system protein NMB0318 TR:Q9K160 (EMBL:AE002389) (384 aa) fasta scores: E(): 4.2e-17%2C 29.4%25 id in 350 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE002389;product=putative HlyD family secretion protein;protein_id=CAL19296.1;transl_table=11
AL590842.1	EMBL	sequence_feature	681839	682720	.	-	.	ID=id1495;Note=Pfam match to entry PF00529 HlyD%2C HlyD family secretion protein%2C score 112.00%2C E-value 1.1e-29;gbkey=misc_feature;inference=protein motif:PF00529
AL590842.1	EMBL	sequence_feature	682772	682828	.	-	.	ID=id1496;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	682877	683203	.	-	.	ID=gene618;Name=YPO0620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0620
AL590842.1	EMBL	CDS	682877	683203	.	-	0	ID=cds606;Parent=gene618;Dbxref=UniProtKB/TrEMBL:Q0WJ49,NCBI_GP:CAL19297.1;Name=CAL19297.1;Note=Similar to internal fragments of Streptomyces fradiae transporter protein UrdJ TR:Q9RP97 (EMBL:AF164961) (525 aa) fasta scores: E(): 6.2%2C 27.0%25 id in 100 aa%2C and Zymomonas mobilis hypothetical ABC transporter permease protein TR:Q9RQC7 (EMBL:AF117351) (337 aa) fasta scores: E(): 0.059%2C 34.8%25 id in 92 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF164961;product=putative exported protein;protein_id=CAL19297.1;transl_table=11
AL590842.1	EMBL	sequence_feature	682886	682942	.	-	.	ID=id1497;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	682979	683044	.	-	.	ID=id1498;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	683075	683140	.	-	.	ID=id1499;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	683209	683409	.	-	.	ID=gene619;Name=YPO0621;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0621
AL590842.1	EMBL	CDS	683209	683409	.	-	0	ID=cds607;Parent=gene619;Dbxref=UniProtKB/TrEMBL:Q7CGF3,NCBI_GP:CAL19298.1;Name=CAL19298.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19298.1;transl_table=11
AL590842.1	EMBL	gene	683582	683689	.	-	.	ID=gene620;Name=YPO0622;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0622
AL590842.1	EMBL	CDS	683582	683689	.	-	0	ID=cds608;Parent=gene620;Dbxref=UniProtKB/TrEMBL:Q0WJ47,NCBI_GP:CAL19299.1;Name=CAL19299.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19299.1;transl_table=11
AL590842.1	EMBL	gene	684175	685407	.	+	.	ID=gene621;Name=YPO0623;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0623
AL590842.1	EMBL	CDS	684175	685407	.	+	0	ID=cds609;Parent=gene621;Dbxref=GOA:Q7CGF4,InterPro:IPR004838,InterPro:IPR004839,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q7CGF4,NCBI_GP:CAL19300.1;Name=CAL19300.1;Note=Similar to Lactococcus lactis aspartate aminotransferase AspC TR:Q9R6Q3 (EMBL:AF035157) (393 aa) fasta scores: E(): 3.1e-29%2C 31.4%25 id in 373 aa%2C and to Pyrococcus abyssi possible aspartate aminotransferase AspC TR:Q9V0L2 (EMBL:AJ248285) (389 aa) fasta scores: E(): 0%2C33.4%25 id in 383 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ248285;product=putative aminotransferase;protein_id=CAL19300.1;transl_table=11
AL590842.1	EMBL	sequence_feature	684220	685377	.	+	.	ID=id1500;Note=Pfam match to entry PF00155 aminotran_1%2CAminotransferases class-I%2C score 121.80%2C E-value 1.2e-32;gbkey=misc_feature;inference=protein motif:PF00155
AL590842.1	EMBL	sequence_feature	684910	684951	.	+	.	ID=id1501;Note=PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00105
AL590842.1	EMBL	gene	685400	686851	.	+	.	ID=gene622;Name=YPO0624;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0624
AL590842.1	EMBL	CDS	685400	686851	.	+	0	ID=cds610;Parent=gene622;Dbxref=GOA:Q7CGF5,InterPro:IPR018461,UniProtKB/TrEMBL:Q7CGF5,NCBI_GP:CAL19301.1;Name=CAL19301.1;Note=Similar to Bacillus firmus Na+/H+ antiporter protein NhaC SW:NHAC_BACFI (P27611) (462 aa) fasta scores: E(): 3.8e-12%2C 24.0%25 id in 496 aa%2C and to Halobacterium sp. NRC-1 possible Na+/H+ antiporter protein NHAC1 TR:AAG18982 (EMBL:AE004998) (521 aa) fasta scores: E(): 9.2e-25%2C 27.2%25 id in 504 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004998;product=putative membrane protein;protein_id=CAL19301.1;transl_table=11
AL590842.1	EMBL	sequence_feature	685436	685504	.	+	.	ID=id1502;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	685514	685567	.	+	.	ID=id1503;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	685628	685696	.	+	.	ID=id1504;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	685739	685807	.	+	.	ID=id1505;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	686021	686089	.	+	.	ID=id1506;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	686117	686176	.	+	.	ID=id1507;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	686213	686281	.	+	.	ID=id1508;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	686324	686380	.	+	.	ID=id1509;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	686459	686527	.	+	.	ID=id1510;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	686606	686674	.	+	.	ID=id1511;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	686732	686800	.	+	.	ID=id1512;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	686855	687301	.	+	.	ID=gene623;Name=YPO0625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0625
AL590842.1	EMBL	CDS	686855	687301	.	+	0	ID=cds611;Parent=gene623;Dbxref=InterPro:IPR019587,InterPro:IPR023393,UniProtKB/TrEMBL:Q7CGF6,NCBI_GP:CAL19302.1;Name=CAL19302.1;Note=Similar to Paracoccus denitrificans hypothetical protein XoxI TR:Q51674 (EMBL:U34346) (183 aa) fasta scores: E(): 0.079%2C 27.0%25 id in 152 aa%2C and to Methylobacterium extorquens hypothetical protein MxaD TR:Q49142 (EMBL:L41608) (176 aa) fasta scores: E(): 0.14%2C 23.8%25 id in 147 aa. CDS DNA has a low G+C content%2C 34.67%25. Possible horizontally acquired gene;gbkey=CDS;inference=similar to sequence:INSDC:U34346;product=hypothetical protein;protein_id=CAL19302.1;transl_table=11
AL590842.1	EMBL	gene	687471	688061	.	+	.	ID=gene624;Name=YPO0626;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0626
AL590842.1	EMBL	CDS	687471	688061	.	+	0	ID=cds612;Parent=gene624;Dbxref=InterPro:IPR013559,UniProtKB/TrEMBL:Q0WJ43,NCBI_GP:CAL19303.1;Name=CAL19303.1;Note=Similar to Campylobacter jejuni hypothetical helix-turn-helix containing protein CJ1387C TR:Q9PMR3 (EMBL:AL139078) (218 aa) fasta scores: E(): 2.2e-14%2C 33.7%25 id in 190 aa%2C and to Vibrio cholerae hypothetical protein VC0355 TR:Q9KV03 (EMBL:AE004124) (240 aa) fasta scores: E(): 4.6e-12%2C 28.7%25 id in 181 aa. CDS DNA has a low G+C content%2C 35.36%25. Possible horizontally acquired gene;gbkey=CDS;inference=similar to sequence:INSDC:AL139078;product=conserved hypothetical protein;protein_id=CAL19303.1;transl_table=11
AL590842.1	EMBL	gene	688077	688457	.	+	.	ID=gene625;Name=YPO0627;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0627
AL590842.1	EMBL	CDS	688077	688457	.	+	0	ID=cds613;Parent=gene625;Dbxref=GOA:Q7CGF7,InterPro:IPR006056,InterPro:IPR006175,InterPro:IPR013813,InterPro:IPR019897,UniProtKB/TrEMBL:Q7CGF7,NCBI_GP:CAL19304.1;Name=CAL19304.1;Note=Similar to Homo sapiens translational inhibitor protein YER057c/YJGF SW:UK14_HUMAN (P52758) (137 aa) fasta scores: E(): 1.9e-18%2C 45.2%25 id in 124 aa%2C and to Bacillus halodurans possible translation initiation inhibitor BH0063 TR:Q9KGJ8 (EMBL:AP001507) (124 aa) fasta scores: E(): 6e-21%2C 53.2%25 id in 126 aa. CDS DNA has a low G+C content%2C35.43%25. Possible horizontally acquired gene;gbkey=CDS;inference=similar to sequence:INSDC:AP001507;product=putative translational inhibitor protein;protein_id=CAL19304.1;transl_table=11
AL590842.1	EMBL	sequence_feature	688095	688454	.	+	.	ID=id1513;Note=Pfam match to entry PF01042 UPF0076%2C Domain of unknown function UPF0076%2C score 219.80%2C E-value 4.1e-62;gbkey=misc_feature;inference=protein motif:PF01042
AL590842.1	EMBL	sequence_feature	688380	688436	.	+	.	ID=id1514;Note=PS01094 Uncharacterized protein family UPF0076 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01094
AL590842.1	EMBL	gene	688742	689146	.	+	.	ID=gene626;Name=YPO0628;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0628
AL590842.1	EMBL	CDS	688742	689146	.	+	0	ID=cds614;Parent=gene626;Dbxref=InterPro:IPR006175,InterPro:IPR013813,UniProtKB/TrEMBL:Q7CGF8,NCBI_GP:CAL19305.1;Name=CAL19305.1;Note=Similar to Rattus norvegicus translational inhibitor protein SW:UK14_RAT (P52759) (136 aa) fasta scores: E(): 0.00018%2C 31.3%25 id in 134 aa%2C and to Streptomyces coelicolor conserved hypothetical protein SC9C7.14c TR:Q9ZBJ6 (EMBL:AL035161) (132 aa) fasta scores: E(): 7.8e-09%2C 38.0%25 id in 129 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL035161;product=putative translational inhibitor protein;protein_id=CAL19305.1;transl_table=11
AL590842.1	EMBL	sequence_feature	688766	689140	.	+	.	ID=id1515;Note=Pfam match to entry PF01042 UPF0076%2C Domain of unknown function UPF0076%2C score 27.10%2C E-value 1.9e-06;gbkey=misc_feature;inference=protein motif:PF01042
AL590842.1	EMBL	gene	689361	689663	.	-	.	ID=gene627;Name=YPO0629;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0629
AL590842.1	EMBL	CDS	689361	689663	.	-	0	ID=cds615;Parent=gene627;Dbxref=InterPro:IPR011008,InterPro:IPR014910,UniProtKB/TrEMBL:Q7CGF9,NCBI_GP:CAL19306.1;Name=CAL19306.1;Note=Similar to Escherichia coli hypothetical protein YdhR SW:YDHR_ECOLI (P77225) (101 aa) fasta scores: E(): 9.3e-20%2C 50.0%25 id in 100 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19306.1;transl_table=11
AL590842.1	EMBL	gene	689923	690639	.	-	.	ID=gene628;Name=YPO0630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0630
AL590842.1	EMBL	CDS	689923	690639	.	-	0	ID=cds616;Parent=gene628;Dbxref=InterPro:IPR012336,InterPro:IPR023169,UniProtKB/TrEMBL:Q7CGG0,NCBI_GP:CAL19307.1;Name=CAL19307.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA0859 TR:AAG04248 (EMBL:AE004520) (200 aa) fasta scores: E(): 1.9e-21%2C 36.6%25 id in 186 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0058 TR:AAG03448 (EMBL:AE004445) (234 aa) fasta scores: E(): 2.6e-11%2C 27.6%25 id in 203 aa. Possible alternative translational start sites;gbkey=CDS;inference=similar to sequence:INSDC:AE004520;product=conserved hypothetical protein;protein_id=CAL19307.1;transl_table=11
AL590842.1	EMBL	gene	690801	691733	.	+	.	ID=gene629;Name=YPO0631;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0631
AL590842.1	EMBL	CDS	690801	691733	.	+	0	ID=cds617;Parent=gene629;Dbxref=GOA:Q7CGG1,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CGG1,NCBI_GP:CAL19308.1;Name=CAL19308.1;Note=Similar to Pseudomonas aeruginosa possible transcriptional regulator PA4174 TR:AAG07561 (EMBL:AE004834) (307 aa) fasta scores: E(): 0%2C 42.3%25 id in 298 aa%2C and to Pseudomonas aeruginosa possible transcriptional regulator PA2877 TR:AAG06265 (EMBL:AE004714) (297 aa) fasta scores: E(): 0%2C 37.8%25 id in 296 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004834;product=LysR-family regulatory protein;protein_id=CAL19308.1;transl_table=11
AL590842.1	EMBL	sequence_feature	690810	691229	.	+	.	ID=id1516;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 123.10%2C E-value 5.1e-33;gbkey=misc_feature;inference=protein motif:PF00126
AL590842.1	EMBL	pseudogene	692184	692692	.	+	.	ID=gene630;Name=YPO0632;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO0632;pseudo=true
AL590842.1	EMBL	CDS	692184	692692	.	+	0	ID=cds618;Parent=gene630;Note=Similar to Escherichia coli cell filamentation protein Fic SW:FIC_ECOLI (P20605) (200 aa) fasta scores: E(): 0.0094%2C 26.6%25 id in 184 aa%2C and to Lactococcus lactis putative mobilization protein MobC TR:O54679 (EMBL:AF036485) (200 aa) fasta scores: E(): 9.6e-05%2C 26.1%25 id in 176 aa. Contains a frameshift after codon 67. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=similar to sequence:INSDC:AF036485;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	692692	692850	.	-	.	ID=gene631;Name=YPO0634;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0634
AL590842.1	EMBL	CDS	692692	692850	.	-	0	ID=cds619;Parent=gene631;Dbxref=UniProtKB/TrEMBL:Q7CGG2,NCBI_GP:CAL19310.1;Name=CAL19310.1;Note=doubtful CDS with no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19310.1;transl_table=11
AL590842.1	EMBL	gene	693048	693248	.	-	.	ID=gene632;Name=YPO0635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0635
AL590842.1	EMBL	CDS	693048	693248	.	-	0	ID=cds620;Parent=gene632;Dbxref=UniProtKB/TrEMBL:Q74RR8,NCBI_GP:CAL19311.1;Name=CAL19311.1;Note=doubtful CDS with no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19311.1;transl_table=11
AL590842.1	EMBL	gene	693382	693636	.	+	.	ID=gene633;Name=YPO0636;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0636
AL590842.1	EMBL	CDS	693382	693636	.	+	0	ID=cds621;Parent=gene633;Dbxref=UniProtKB/TrEMBL:Q74RR7,NCBI_GP:CAL19312.1;Name=CAL19312.1;Note=doubtful CDS with no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19312.1;transl_table=11
AL590842.1	EMBL	repeat_region	693715	695668	.	+	.	ID=id1517;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	693715	693742	.	+	.	ID=id1518;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	693801	694823	.	+	.	ID=gene634;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO0637
AL590842.1	EMBL	CDS	693801	694823	.	+	0	ID=cds622;Parent=gene634;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL19313.1;Name=CAL19313.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL19313.1;transl_table=11
AL590842.1	EMBL	sequence_feature	693825	693908	.	+	.	ID=id1519;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	sequence_feature	693852	693917	.	+	.	ID=id1520;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	694146	694679	.	+	.	ID=id1521;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	gene	694820	695602	.	+	.	ID=gene635;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO0638
AL590842.1	EMBL	CDS	694820	695602	.	+	0	ID=cds623;Parent=gene635;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL19314.1;Name=CAL19314.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL19314.1;transl_table=11
AL590842.1	EMBL	sequence_feature	694988	695527	.	+	.	ID=id1522;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	695147	695170	.	+	.	ID=id1523;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	INVERTED	695641	695668	.	-	.	ID=id1524;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	695728	697110	.	+	.	ID=gene636;Name=YPO0639;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0639
AL590842.1	EMBL	CDS	695728	697110	.	+	0	ID=cds624;Parent=gene636;Dbxref=InterPro:IPR003615,InterPro:IPR016583,UniProtKB/TrEMBL:Q7CGG3,NCBI_GP:CAL19315.1;Name=CAL19315.1;Note=C-terminal region of the CDS is similar to an internal region of Pseudomonas aeruginosa flagellin FliC TR:O33419 (EMBL:L81176) (259 aa) fasta scores: E(): 2.1%2C25.6%25 id in 242 aa%2C and to the C-terminal region of Escherichia coli hypothetical protein YhhZ SW:YHHZ_ECOLI (P46855) (392 aa) fasta scores: E(): 8.7e-17%2C 33.3%25 id in 228 aa. CDS YP2868 and YP2962 have identity to the the N-terminal region of Escherichia coli hypothetical protein YhhZ. There are no IS100 insertion elements proximal to either CDS (there is an IS200 proximal to YP2962) therefore it is not possible to say if these truncated homologues resulted from recombination. CDS is also shares similarity with the termini of YPO1258 (52.6%25 identity in 462 aa overlap) and and the small CDS YPO3952 (59.5%25 identity in 79 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:L81176;product=hypothetical protein;protein_id=CAL19315.1;transl_table=11
AL590842.1	EMBL	gene	697119	697589	.	+	.	ID=gene637;Name=YPO0640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0640
AL590842.1	EMBL	CDS	697119	697589	.	+	0	ID=cds625;Parent=gene637;Dbxref=InterPro:IPR018958,UniProtKB/TrEMBL:Q0WJ31,NCBI_GP:CAL19316.1;Name=CAL19316.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19316.1;transl_table=11
AL590842.1	EMBL	gene	697667	698071	.	+	.	ID=gene638;Name=YPO0641;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0641
AL590842.1	EMBL	CDS	697667	698071	.	+	0	ID=cds626;Parent=gene638;Dbxref=UniProtKB/TrEMBL:Q0WJ30,NCBI_GP:CAL19317.1;Name=CAL19317.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19317.1;transl_table=11
AL590842.1	EMBL	gene	698088	698378	.	+	.	ID=gene639;Name=YPO0641a;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0641a
AL590842.1	EMBL	CDS	698088	698378	.	+	0	ID=cds627;Parent=gene639;Dbxref=GOA:Q7CGG4,InterPro:IPR005335,UniProtKB/TrEMBL:Q7CGG4,NCBI_GP:CAL19318.1;Name=CAL19318.1;Note=Poor database hits. Similar to C-terminal region of Lactococcus lactis bacteriophage hypothetical protein TR:O53062 (EMBL:Y11901) (136 aa) fasta scores: E(): 0.83%2C34.7%25 id in 75 aa;gbkey=CDS;inference=similar to sequence:INSDC:Y11901;product=hypothetical protein;protein_id=CAL19318.1;transl_table=11
AL590842.1	EMBL	gene	698575	698694	.	+	.	ID=gene640;Name=YPO0642;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0642
AL590842.1	EMBL	CDS	698575	698694	.	+	0	ID=cds628;Parent=gene640;Dbxref=UniProtKB/TrEMBL:Q0WJ28,NCBI_GP:CAL19319.1;Name=CAL19319.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19319.1;transl_table=11
AL590842.1	EMBL	tRNA	698940	699016	.	-	.	ID=rna11;Note=tRNA Met anticodon CAT%2C Cove score 93.29;gbkey=tRNA;product=tRNA-Met
AL590842.1	EMBL	exon	698940	699016	.	-	.	ID=id1525;Parent=rna11;Note=tRNA Met anticodon CAT%2C Cove score 93.29;gbkey=tRNA;product=tRNA-Met
AL590842.1	EMBL	gene	699212	701050	.	-	.	ID=gene641;Name=alt;gbkey=Gene;gene=alt;gene_biotype=protein_coding;gene_synonym=rpoD;locus_tag=YPO0643
AL590842.1	EMBL	CDS	699212	701050	.	-	0	ID=cds629;Parent=gene641;Dbxref=GOA:Q0WJ27,InterPro:IPR000943,InterPro:IPR007127,InterPro:IPR007624,InterPro:IPR007627,InterPro:IPR007630,InterPro:IPR007631,InterPro:IPR009042,InterPro:IPR011991,InterPro:IPR012760,InterPro:IPR013324,InterPro:IPR013325,InterPro:IPR014284,InterPro:IPR028630,UniProtKB/TrEMBL:Q0WJ27,NCBI_GP:CAL19320.1;Name=CAL19320.1;Note=Similar to Escherichia coli RNA polymerase sigma factor (sigma 70) RpoD SW:RPSD_ECOLI (P00579) (613 aa) fasta scores: E(): 0%2C 92.0%25 id in 616 aa%2C and to Salmonella typhimurium RNA polymerase sigma factor RpoD SW:RPSD_SALTY (P07336) (615 aa) fasta scores: E(): 0%2C 92.0%25 id in 615 aa;gbkey=CDS;gene=alt;product=RNA polymerase sigma factor RpoD;protein_id=CAL19320.1;transl_table=11
AL590842.1	EMBL	sequence_feature	699254	699937	.	-	.	ID=id1526;Note=Pfam match to entry PF00140 sigma70%2C Sigma-70 factor%2C score 461.10%2C E-value 9.4e-135;gbkey=misc_feature;gene=alt;inference=protein motif:PF00140
AL590842.1	EMBL	sequence_feature	699260	699340	.	-	.	ID=id1527;Note=PS00716 Sigma-70 factors family signature 2.;gbkey=misc_feature;gene=alt;inference=protein motif:ProSite:PS00716
AL590842.1	EMBL	sequence_feature	699278	699343	.	-	.	ID=id1528;Note=Predicted helix-turn-helix motif with score 1917 (+5.72 SD) at aa 590-611%2C sequence HTLEEVGKQFDVTRERIRQIEA;gbkey=misc_feature;gene=alt
AL590842.1	EMBL	sequence_feature	699806	699847	.	-	.	ID=id1529;Note=PS00715 Sigma-70 factors family signature 1.;gbkey=misc_feature;gene=alt;inference=protein motif:ProSite:PS00715
AL590842.1	EMBL	gene	701208	702956	.	-	.	ID=gene642;Name=dnaG;gbkey=Gene;gene=dnaG;gene_biotype=protein_coding;gene_synonym=dnaP,parB;locus_tag=YPO0644
AL590842.1	EMBL	CDS	701208	702956	.	-	0	ID=cds630;Parent=gene642;Dbxref=GOA:Q7CGG5,InterPro:IPR002694,InterPro:IPR006171,InterPro:IPR006295,InterPro:IPR013173,InterPro:IPR013264,InterPro:IPR016136,InterPro:IPR019475,UniProtKB/TrEMBL:Q7CGG5,NCBI_GP:CAL19321.1;Name=CAL19321.1;Note=Similar to Escherichia coli DNA primase SW:PRIM_ECOLI (P02923) (581 aa) fasta scores: E(): 0%2C 76.8%25 id in 581 aa%2C and to Salmonella typhimurium DNA primase DnaG SW:PRIM_SALTY (P07362) (581 aa) fasta scores: E(): 0%2C74.9%25 id in 581 aa;gbkey=CDS;gene=dnaG;product=DNA primase;protein_id=CAL19321.1;transl_table=11
AL590842.1	EMBL	sequence_feature	701934	702182	.	-	.	ID=id1530;Note=Pfam match to entry PF01751 Toprim%2C Toprim domain%2Cscore 107.50%2C E-value 2.6e-28;gbkey=misc_feature;gene=dnaG;inference=protein motif:PF01751
AL590842.1	EMBL	sequence_feature	702681	702851	.	-	.	ID=id1531;Note=Pfam match to entry PF01807 zf-CHC2%2C CHC2 zinc finger%2C score 137.80%2C E-value 1.9e-37;gbkey=misc_feature;gene=dnaG;inference=protein motif:PF01807
AL590842.1	EMBL	gene	703092	703307	.	-	.	ID=gene643;Name=rpsU;gbkey=Gene;gene=rpsU;gene_biotype=protein_coding;locus_tag=YPO0645
AL590842.1	EMBL	CDS	703092	703307	.	-	0	ID=cds631;Parent=gene643;Dbxref=GOA:P68686,InterPro:IPR001911,InterPro:IPR018278,NCBI_GP:CAL19322.1;Name=CAL19322.1;Note=Identical to Escherichia coli and Salmonella typhimurium 30S ribosomal protein S21 RpsU SW:RS21_ECOLI (P02379) (70 aa) fasta scores: E(): 2.3e-27%2C 100.0%25 id in 70 aa%2C and to Buchnera aphidicola (subsp Acyrthosiphon pisum) 30S ribosomal protein S21 RpsU TR:BAB12780 (EMBL:AP001118) (71 aa) fasta scores: E(): 1e-25%2C 90.1%25 id in 71 aa;gbkey=CDS;gene=rpsU;inference=similar to sequence:INSDC:AP001118;product=30S ribosomal protein S21;protein_id=CAL19322.1;transl_table=11
AL590842.1	EMBL	sequence_feature	703143	703304	.	-	.	ID=id1532;Note=Pfam match to entry PF01165 Ribosomal_S21%2C Ribosomal protein S21%2C score 127.90%2C E-value 1.9e-34;gbkey=misc_feature;gene=rpsU;inference=protein motif:PF01165
AL590842.1	EMBL	sequence_feature	703233	703271	.	-	.	ID=id1533;Note=PS01181 Ribosomal protein S21 signature.;gbkey=misc_feature;gene=rpsU;inference=protein motif:ProSite:PS01181
AL590842.1	EMBL	gene	703713	704726	.	+	.	ID=gene644;Name=gcp;gbkey=Gene;gene=gcp;gene_biotype=protein_coding;locus_tag=YPO0646
AL590842.1	EMBL	CDS	703713	704726	.	+	0	ID=cds632;Parent=gene644;Dbxref=GOA:Q74RQ9,InterPro:IPR000905,InterPro:IPR017860,InterPro:IPR017861,InterPro:IPR022450,NCBI_GP:CAL19323.1;Name=CAL19323.1;Note=Similar to Haemophilus ducreyi sialylglycoprotease Gcp TR:Q9L7A5 (EMBL:AF224466) (348 aa) fasta scores: E(): 0%2C 73.4%25 id in 342 aa%2C and to Escherichia coli probable O-sialoglycoprotein endopeptidase Gcp SW:GCP_ECOLI (P05852) (337 aa) fasta scores: E(): 0%2C 87.8%25 id in 335 aa;gbkey=CDS;gene=gcp;inference=similar to sequence:INSDC:AF224466;product=putative glycoprotease;protein_id=CAL19323.1;transl_table=11
AL590842.1	EMBL	sequence_feature	703713	704654	.	+	.	ID=id1534;Note=Pfam match to entry PF00814 Peptidase_M22%2CGlycoprotease family%2C score 649.20%2C E-value 2.2e-191;gbkey=misc_feature;gene=gcp;inference=protein motif:PF00814
AL590842.1	EMBL	sequence_feature	703998	704060	.	+	.	ID=id1535;Note=PS01016 Glycoprotease family signature.;gbkey=misc_feature;gene=gcp;inference=protein motif:ProSite:PS01016
AL590842.1	EMBL	gene	704972	705622	.	-	.	ID=gene645;Name=YPO0647;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0647
AL590842.1	EMBL	CDS	704972	705622	.	-	0	ID=cds633;Parent=gene645;Dbxref=GOA:Q8ZI67,InterPro:IPR003811,NCBI_GP:CAL19324.1;Name=CAL19324.1;Note=Similar to Escherichia coli hypothetical protein YgiH SW:YGIH_ECOLI (P31056) (205 aa) fasta scores: E(): 0%2C82.8%25 id in 204 aa%2C and to Haemophilus influenzae hypothetical protein HI0266 SW:YGIH_HAEIN (P44603) (199 aa) fasta scores: E(): 0%2C 67.3%25 id in 199 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL19324.1;transl_table=11
AL590842.1	EMBL	sequence_feature	705149	705214	.	-	.	ID=id1536;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	705230	705295	.	-	.	ID=id1537;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	705317	705382	.	-	.	ID=id1538;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	705395	705460	.	-	.	ID=id1539;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	705545	705610	.	-	.	ID=id1540;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	705730	706089	.	+	.	ID=gene646;Name=folB;gbkey=Gene;gene=folB;gene_biotype=protein_coding;locus_tag=YPO0648
AL590842.1	EMBL	CDS	705730	706089	.	+	0	ID=cds634;Parent=gene646;Dbxref=GOA:Q0WJ22,InterPro:IPR006156,InterPro:IPR006157,PDB:3R2E,UniProtKB/TrEMBL:Q0WJ22,NCBI_GP:CAL19325.1;Name=CAL19325.1;Note=Similar to Escherichia coli dihydroneopterin aldolase FolB SW:FOLB_ECOLI (P31055) (122 aa) fasta scores: E(): 0%2C 84.7%25 id in 118 aa%2C and to Vibrio cholerae putative dihydroneopterin aldolase VC0524 TR:Q9KUJ6 (EMBL:AE004138) (129 aa) fasta scores: E(): 2.9e-30%2C 67.2%25 id in 116 aa;gbkey=CDS;gene=folB;inference=similar to sequence:INSDC:AE004138;product=putative dihydroneopterin aldolase;protein_id=CAL19325.1;transl_table=11
AL590842.1	EMBL	sequence_feature	705739	706077	.	+	.	ID=id1541;Note=Pfam match to entry PF02152 FolB%2C Dihydroneopterin aldolase%2C score 168.20%2C E-value 1.7e-47;gbkey=misc_feature;gene=folB;inference=protein motif:PF02152
AL590842.1	EMBL	gene	706363	707181	.	+	.	ID=gene647;Name=bacA;gbkey=Gene;gene=bacA;gene_biotype=protein_coding;locus_tag=YPO0649
AL590842.1	EMBL	CDS	706363	707181	.	+	0	ID=cds635;Parent=gene647;Dbxref=GOA:Q8ZI65,InterPro:IPR003824,NCBI_GP:CAL19326.1;Name=CAL19326.1;Note=Similar to Escherichia coli bacitracin resistance protein (possible kinase) BacA SW:BACA_ECOLI (P31054) (273 aa) fasta scores: E(): 0%2C 81.3%25 id in 272 aa%2C and to Bacillus subtilis hypothetical protein YubB TR:P94507 (EMBL:Z99119) (276 aa) fasta scores: E(): 0%2C 47.5%25 id in 276 aa;gbkey=CDS;gene=bacA;inference=similar to sequence:INSDC:Z99119;product=putative bacitracin resistance protein;protein_id=CAL19326.1;transl_table=11
AL590842.1	EMBL	sequence_feature	706372	706440	.	+	.	ID=id1542;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=bacA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	706501	706569	.	+	.	ID=id1543;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=bacA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	706594	706617	.	+	.	ID=id1544;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=bacA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	706627	706686	.	+	.	ID=id1545;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=bacA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	706723	706776	.	+	.	ID=id1546;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=bacA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	706819	706878	.	+	.	ID=id1547;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=bacA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	706912	706980	.	+	.	ID=id1548;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=bacA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	707038	707106	.	+	.	ID=id1549;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=bacA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	707119	707175	.	+	.	ID=id1550;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=bacA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	707417	708655	.	-	.	ID=gene648;Name=cca;gbkey=Gene;gene=cca;gene_biotype=protein_coding;locus_tag=YPO0650
AL590842.1	EMBL	CDS	707417	708655	.	-	0	ID=cds636;Parent=gene648;Dbxref=GOA:Q8ZI64,InterPro:IPR002646,InterPro:IPR003607,InterPro:IPR006674,InterPro:IPR012006,NCBI_GP:CAL19327.1;Name=CAL19327.1;Note=Similar to Escherichia coli tRNA nucleotidyltransferase Cca SW:CCA_ECOLI (P06961) (412 aa) fasta scores: E(): 0%2C 72.6%25 id in 405 aa%2C and to Vibrio cholerae tRNA nucleotidyltransferase VC2446 TR:Q9KPC6 (EMBL:AE004314) (403 aa) fasta scores: E(): 0%2C 61.5%25 id in 400 aa;gbkey=CDS;gene=cca;inference=similar to sequence:INSDC:AE004314;product=tRNA nucleotidyltransferase;protein_id=CAL19327.1;transl_table=11
AL590842.1	EMBL	sequence_feature	707660	707974	.	-	.	ID=id1551;Note=Pfam match to entry PF01966 HD%2C HD domain%2C score 60.70%2C E-value 3.1e-14;gbkey=misc_feature;gene=cca;inference=protein motif:PF01966
AL590842.1	EMBL	sequence_feature	708008	708484	.	-	.	ID=id1552;Note=Pfam match to entry PF01743 PolyA_pol%2C Poly A polymerase family%2C score 218.20%2C E-value 1.2e-61;gbkey=misc_feature;gene=cca;inference=protein motif:PF01743
AL590842.1	EMBL	gene	708815	709438	.	-	.	ID=gene649;Name=YPO0651;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0651
AL590842.1	EMBL	CDS	708815	709438	.	-	0	ID=cds637;Parent=gene649;Dbxref=InterPro:IPR003646,InterPro:IPR016476,UniProtKB/TrEMBL:Q7CGG7,NCBI_GP:CAL19328.1;Name=CAL19328.1;Note=Similar to Escherichia coli hypothetical protein YgiM SW:YGIM_ECOLI (P39202) (206 aa) fasta scores: E(): 0%2C71.4%25 id in 206 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA4154 TR:AAG07541 (EMBL:AE004832) (222 aa) fasta scores: E(): 9.9e-23%2C 40.1%25 id in 207 aa. Contains coiled-coil region%2C residues 126 to 157.;gbkey=CDS;inference=similar to sequence:INSDC:AE004832;product=putative exported protein;protein_id=CAL19328.1;transl_table=11
AL590842.1	EMBL	sequence_feature	708854	708919	.	-	.	ID=id1553;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	709742	711049	.	+	.	ID=gene650;Name=YPO0652;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0652
AL590842.1	EMBL	CDS	709742	711049	.	+	0	ID=cds638;Parent=gene650;Dbxref=InterPro:IPR023577,UniProtKB/TrEMBL:Q74RQ5,NCBI_GP:CAL19329.1;Name=CAL19329.1;Note=Similar to Escherichia coli hypothetical protein YgiF SW:YGIF_ECOLI (P30871) (433 aa) fasta scores: E(): 0%2C49.2%25 id in 435 aa%2C and to Vibrio cholerae hypothetical protein VC2440 vc2440 TR:Q9KPD2 (EMBL:AE004314) (505 aa) fasta scores: E(): 0%2C 37.4%25 id in 478 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004314;product=conserved hypothetical protein;protein_id=CAL19329.1;transl_table=11
AL590842.1	EMBL	gene	711220	714075	.	+	.	ID=gene651;Name=glnE;gbkey=Gene;gene=glnE;gene_biotype=protein_coding;locus_tag=YPO0653
AL590842.1	EMBL	CDS	711220	714075	.	+	0	ID=cds639;Parent=gene651;Dbxref=GOA:Q8ZI61,InterPro:IPR005190,InterPro:IPR013546,InterPro:IPR023057,NCBI_GP:CAL19330.1;Name=CAL19330.1;Note=Similar to Escherichia coli glutamate-ammonia-ligase adenylyltransferase GlnE SW:GLNE_ECOLI (P30870) (946 aa) fasta scores: E(): 0%2C 72.3%25 id in 943 aa%2C and to Vibrio cholerae glutamate-ammonia-ligase adenylyltransferase VC2438 TR:Q9KPD4 (EMBL:AE004313) (948 aa) fasta scores: E(): 0%2C 60.1%25 id in 958 aa;gbkey=CDS;gene=glnE;inference=similar to sequence:INSDC:AE004313;product=glutamate-ammonia-ligase adenylyltransferase;protein_id=CAL19330.1;transl_table=11
AL590842.1	EMBL	gene	714210	715640	.	+	.	ID=gene652;Name=rfaE;gbkey=Gene;gene=rfaE;gene_biotype=protein_coding;gene_synonym=waaE;locus_tag=YPO0654
AL590842.1	EMBL	CDS	714210	715640	.	+	0	ID=cds640;Parent=gene652;Dbxref=GOA:Q8ZI60,InterPro:IPR002173,InterPro:IPR004821,InterPro:IPR011611,InterPro:IPR011913,InterPro:IPR011914,InterPro:IPR014729,InterPro:IPR023030,InterPro:IPR029056,NCBI_GP:CAL19331.1;Name=CAL19331.1;Note=Similar to Escherichia coli ADP-heptose synthase RfaE SW:RFAE_ECOLI (P76658) (477 aa) fasta scores: E(): 0%2C86.1%25 id in 475 aa%2C and to Salmonella enterica ADP-heptose synthase RfaE TR:Q9RFY8 (EMBL:AF163661) (477 aa) fasta scores: E(): 0%2C 84.7%25 id in 472 aa;gbkey=CDS;gene=rfaE;inference=similar to sequence:INSDC:AF163661;product=ADP-heptose synthase;protein_id=CAL19331.1;transl_table=11
AL590842.1	EMBL	sequence_feature	714357	715016	.	+	.	ID=id1554;Note=Pfam match to entry PF00294 pfkB%2C pfkB family carbohydrate kinase%2C score 113.00%2C E-value 5.7e-30;gbkey=misc_feature;gene=rfaE;inference=protein motif:PF00294
AL590842.1	EMBL	sequence_feature	714360	714431	.	+	.	ID=id1555;Note=PS00583 pfkB family of carbohydrate kinases signature 1.;gbkey=misc_feature;gene=rfaE;inference=protein motif:ProSite:PS00583
AL590842.1	EMBL	sequence_feature	715239	715631	.	+	.	ID=id1556;Note=Pfam match to entry PF01467 Cytidylyltransf%2CCytidylyltransferase%2C score 148.90%2C E-value 8.9e-41;gbkey=misc_feature;gene=rfaE;inference=protein motif:PF01467
AL590842.1	EMBL	gene	715677	716927	.	+	.	ID=gene653;Name=asoB;gbkey=Gene;gene=asoB;gene_biotype=protein_coding;gene_synonym=yjeH;locus_tag=YPO0655
AL590842.1	EMBL	CDS	715677	716927	.	+	0	ID=cds641;Parent=gene653;Dbxref=GOA:Q0WJ15,InterPro:IPR002293,UniProtKB/TrEMBL:Q0WJ15,NCBI_GP:CAL19332.1;Name=CAL19332.1;Note=Similar to Aeromonas salmonicida protein involved in surface layer secretion and virulence%2C AsoB TR:Q44255 (EMBL:L47259) (426 aa) fasta scores: E(): 0%2C 51.6%25 id in 401 aa%2C and to Escherichia coli hypothetical protein YjeH SW:YJEH_ECOLI (P39277) (418 aa) fasta scores: E(): 0%2C 70.1%25 id in 411 aa;gbkey=CDS;gene=asoB;inference=similar to sequence:INSDC:L47259;product=putative permease;protein_id=CAL19332.1;transl_table=11
AL590842.1	EMBL	sequence_feature	715686	716900	.	+	.	ID=id1557;Note=Pfam match to entry PF00324 aa_permeases%2C Amino acid permease%2C score -238.90%2C E-value 0.00081;gbkey=misc_feature;gene=asoB;inference=protein motif:PF00324
AL590842.1	EMBL	sequence_feature	715797	715865	.	+	.	ID=id1558;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=asoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	715941	716009	.	+	.	ID=id1559;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=asoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	716019	716087	.	+	.	ID=id1560;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=asoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	716106	716174	.	+	.	ID=id1561;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=asoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	716232	716300	.	+	.	ID=id1562;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=asoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	716334	716402	.	+	.	ID=id1563;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=asoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	716460	716528	.	+	.	ID=id1564;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=asoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	716622	716690	.	+	.	ID=id1565;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=asoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	716706	716774	.	+	.	ID=id1566;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=asoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	716811	716879	.	+	.	ID=id1567;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=asoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	717252	717533	.	-	.	ID=gene654;Name=YPO0656;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0656
AL590842.1	EMBL	CDS	717252	717533	.	-	0	ID=cds642;Parent=gene654;Dbxref=InterPro:IPR007475,UniProtKB/TrEMBL:Q7CGG8,NCBI_GP:CAL19333.1;Name=CAL19333.1;Note=Similar to Escherichia coli hypothetical protein YqiC SW:YQIC_ECOLI (Q46868) (116 aa) fasta scores: E(): 1.1e-23%2C 88.6%25 id in 79 aa%2C and to Vibrio cholerae hypothetical protein VC0163 TR:Q9KVI3 (EMBL:AE004106) (83 aa) fasta scores: E(): 1.5e-17%2C 62.5%25 id in 80 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004106;product=conserved hypothetical protein;protein_id=CAL19333.1;transl_table=11
AL590842.1	EMBL	gene	717689	717940	.	+	.	ID=gene655;Name=YPO0657;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0657
AL590842.1	EMBL	CDS	717689	717940	.	+	0	ID=cds643;Parent=gene655;Dbxref=UniProtKB/TrEMBL:Q0WJ13,NCBI_GP:CAL19334.1;Name=CAL19334.1;Note=No significant database hits to the full length CDS. N-terminus similar to internal region of Homo sapiens pyruvate kinase PK-L TR:Q16716 (EMBL:U47654) (566 aa) fasta scores: E(): 0.59%2C 40.8%25 id in 49 aa;gbkey=CDS;inference=similar to sequence:INSDC:U47654;product=hypothetical protein;protein_id=CAL19334.1;transl_table=11
AL590842.1	EMBL	gene	718102	718755	.	+	.	ID=gene656;Name=htrP;gbkey=Gene;gene=htrP;gene_biotype=protein_coding;gene_synonym=ribB;locus_tag=YPO0658
AL590842.1	EMBL	CDS	718102	718755	.	+	0	ID=cds644;Parent=gene656;Dbxref=GOA:Q8ZI56,InterPro:IPR000422,InterPro:IPR017945,PDB:3H07,NCBI_GP:CAL19335.1;Name=CAL19335.1;Note=Similar to Escherichia coli 3%2C4-dihydroxy-2-butanone 4-phosphate synthase RibB SW:RIBB_ECOLI (P24199) (217 aa) fasta scores: E(): 0%2C 77.4%25 id in 217 aa%2C and to Buchnera aphidicola (subsp Acyrthosiphon pisum) possible 3%2C4-dihydroxy-2-butanone 4-phosphate synthase BU059 SW:RIBB_BUCAI (P57167) (215 aa) fasta scores: E(): 0%2C 66.8%25 id in 211 aa;gbkey=CDS;gene=htrP;product=3%2C4-dihydroxy-2-butanone 4-phosphate synthase;protein_id=CAL19335.1;transl_table=11
AL590842.1	EMBL	sequence_feature	718147	718734	.	+	.	ID=id1568;Note=Pfam match to entry PF00926 DHBP_synthase%2C3%2C4-dihydroxy-2-butanone 4-phosphate synthase%2C score 414.30%2C E-value 1.1e-120;gbkey=misc_feature;gene=htrP;inference=protein motif:PF00926
AL590842.1	EMBL	gene	719214	719996	.	+	.	ID=gene657;Name=YPO0659;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0659
AL590842.1	EMBL	CDS	719214	719996	.	+	0	ID=cds645;Parent=gene657;Dbxref=GOA:Q7CGG9,InterPro:IPR004183,InterPro:IPR014436,UniProtKB/TrEMBL:Q7CGG9,NCBI_GP:CAL19336.1;Name=CAL19336.1;Note=Similar to Escherichia coli hypothetical protein YgiD SW:YGID_ECOLI (P24197) (271 aa) fasta scores: E(): 0%2C71.0%25 id in 262 aa%2C and to Pseudomonas aeruginosa conserved hypothetical protein PA2839 TR:AAG06227 (EMBL:AE004710) (256 aa) fasta scores: E(): 2.2e-32%2C 39.4%25 id in 254 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004710;product=conserved hypothetical protein;protein_id=CAL19336.1;transl_table=11
AL590842.1	EMBL	gene	720403	721563	.	-	.	ID=gene658;Name=YPO0660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0660
AL590842.1	EMBL	CDS	720403	721563	.	-	0	ID=cds646;Parent=gene658;Dbxref=InterPro:IPR005494,InterPro:IPR016185,UniProtKB/TrEMBL:Q7CGH0,NCBI_GP:CAL19337.1;Name=CAL19337.1;Note=Similar to Escherichia coli hypothetical protein YgiC SW:YGIC_ECOLI (P24196) (386 aa) fasta scores: E(): 0%2C78.7%25 id in 385 aa%2C and to the C-terminus of Escherichia coli bifunctional glutathionylspermidine synthetase/amidase Gsp SW:GSP_ECOLI (P43675) (619 aa) fasta scores: E(): 1.3e-10%2C 29.6%25 id in 389 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19337.1;transl_table=11
AL590842.1	EMBL	gene	721573	722259	.	-	.	ID=gene659;Name=YPO0661;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0661
AL590842.1	EMBL	CDS	721573	722259	.	-	0	ID=cds647;Parent=gene659;Dbxref=InterPro:IPR009576,NCBI_GP:CAL19338.1;Name=CAL19338.1;Note=Similar to Escherichia coli hypothetical protein YgiB SW:YGIB_ECOLI (P24195) (234 aa) fasta scores: E(): 0%2C73.5%25 id in 230 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL19338.1;transl_table=11
AL590842.1	EMBL	gene	722325	722495	.	+	.	ID=gene660;Name=YPO0662;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0662
AL590842.1	EMBL	CDS	722325	722495	.	+	0	ID=cds648;Parent=gene660;Dbxref=UniProtKB/TrEMBL:Q74RP6,NCBI_GP:CAL19339.1;Name=CAL19339.1;Note=doubtful CDS with no significant database matches;gbkey=CDS;product=hypothetical protein;protein_id=CAL19339.1;transl_table=11
AL590842.1	EMBL	gene	722560	723963	.	-	.	ID=gene661;Name=hasF;gbkey=Gene;gene=hasF;gene_biotype=protein_coding;gene_synonym=mtcB,mukA,refI,tolC;locus_tag=YPO0663
AL590842.1	EMBL	CDS	722560	723963	.	-	0	ID=cds649;Parent=gene661;Dbxref=GOA:Q7CGH2,InterPro:IPR003423,InterPro:IPR010130,UniProtKB/TrEMBL:Q7CGH2,NCBI_GP:CAL19340.1;Name=CAL19340.1;Note=Similar to Serratia marcescens haemophore (HasA) ABC-transporter outer membrane component%2C HasF TR:Q54452 (EMBL:X98513) (500 aa) fasta scores: E(): 0%2C 76.7%25 id in 455 aa%2C and to Escherichia coli ABC-transporter outer membrane protein%2C TolC SW:TOLC_ECOLI (P02930) (495 aa) fasta scores: E(): 0%2C 73.2%25 id in 470 aa;gbkey=CDS;gene=hasF;inference=similar to sequence:INSDC:X98513;product=ABC-transporter outer membrane component;protein_id=CAL19340.1;transl_table=11
AL590842.1	EMBL	sequence_feature	722653	723264	.	-	.	ID=id1569;Note=Pfam match to entry PF02321 OEP%2C %2C score 178.00%2CE-value 1.6e-49;gbkey=misc_feature;gene=hasF;inference=protein motif:PF02321
AL590842.1	EMBL	sequence_feature	723295	723885	.	-	.	ID=id1570;Note=Pfam match to entry PF02321 OEP%2C %2C score 155.50%2CE-value 8.9e-43;gbkey=misc_feature;gene=hasF;inference=protein motif:PF02321
AL590842.1	EMBL	gene	724353	724985	.	+	.	ID=gene662;Name=YPO0664;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0664
AL590842.1	EMBL	CDS	724353	724985	.	+	0	ID=cds650;Parent=gene662;Dbxref=GOA:Q7CGH3,InterPro:IPR000086,InterPro:IPR004385,InterPro:IPR015797,InterPro:IPR020084,UniProtKB/TrEMBL:Q7CGH3,NCBI_GP:CAL19341.1;Name=CAL19341.1;Note=Similar to Rhodobacter sphaeroides tellurite resistance protein TrgA TR:O07841 (EMBL:AF004296) (361 aa) fasta scores: E(): 5.9e-21%2C 37.8%25 id in 196 aa%2C and to Escherichia coli hypothetical protein YqiE SW:YQIE_ECOLI (P36651) (209 aa) fasta scores: E(): 0%2C 82.7%25 id in 208 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF004296;product=putative MutT-family protein;protein_id=CAL19341.1;transl_table=11
AL590842.1	EMBL	sequence_feature	724518	724943	.	+	.	ID=id1571;Note=Pfam match to entry PF00293 mutT%2C Bacterial mutT protein%2C score 82.40%2C E-value 9.1e-21;gbkey=misc_feature;inference=protein motif:PF00293
AL590842.1	EMBL	gene	725019	725444	.	+	.	ID=gene663;Name=YPO0665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0665
AL590842.1	EMBL	CDS	725019	725444	.	+	0	ID=cds651;Parent=gene663;Dbxref=InterPro:IPR009659,UniProtKB/TrEMBL:Q7CGH4,NCBI_GP:CAL19342.1;Name=CAL19342.1;Note=Similar to Escherichia coli hypothetical protein YqiB SW:YQIB_ECOLI (P36652) (140 aa) fasta scores: E(): 0%2C79.7%25 id in 138 aa%2C and to Vibrio cholerae hypothetical protein VC2434 TR:Q9KPD6 (EMBL:AE004313) (148 aa) fasta scores: E(): 1.6e-26%2C 49.3%25 id in 140 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004313;product=conserved hypothetical protein;protein_id=CAL19342.1;transl_table=11
AL590842.1	EMBL	gene	725526	726353	.	+	.	ID=gene664;Name=icc;gbkey=Gene;gene=icc;gene_biotype=protein_coding;locus_tag=YPO0666
AL590842.1	EMBL	CDS	725526	726353	.	+	0	ID=cds652;Parent=gene664;Dbxref=GOA:Q74RP2,InterPro:IPR004843,InterPro:IPR013622,InterPro:IPR026575,InterPro:IPR029052,UniProtKB/TrEMBL:Q74RP2,NCBI_GP:CAL19343.1;Name=CAL19343.1;Note=Similar to Escherichia coli Icc protein SW:ICC_ECOLI (P36650) (275 aa) fasta scores: E(): 0%2C 70.2%25 id in 275 aa. The Icc protein has been shown to affect the expression of the lacZ gene.;gbkey=CDS;gene=icc;product=Icc protein homologue;protein_id=CAL19343.1;transl_table=11
AL590842.1	EMBL	gene	726350	726934	.	+	.	ID=gene665;Name=YPO0667;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0667
AL590842.1	EMBL	CDS	726350	726934	.	+	0	ID=cds653;Parent=gene665;Dbxref=InterPro:IPR008886,InterPro:IPR029058,UniProtKB/TrEMBL:Q7CGH5,NCBI_GP:CAL19344.1;Name=CAL19344.1;Note=Similar to Escherichia coli hypothetical protein YqiA SW:YQIA_ECOLI (P36653) (193 aa) fasta scores: E(): 0%2C76.3%25 id in 190 aa%2C and to the C-terminus of Paracoccus denitrificans S-formylglutathione hydrolase FghA TR:Q51671 (EMBL:U34346) (279 aa) fasta scores: E(): 0.52%2C 25.5%25 id in 184 aa;gbkey=CDS;inference=similar to sequence:INSDC:U34346;product=conserved hypothetical protein;protein_id=CAL19344.1;transl_table=11
AL590842.1	EMBL	gene	727036	728931	.	+	.	ID=gene666;Name=nfxD;gbkey=Gene;gene=nfxD;gene_biotype=protein_coding;gene_synonym=parE;locus_tag=YPO0668
AL590842.1	EMBL	CDS	727036	728931	.	+	0	ID=cds654;Parent=gene666;Dbxref=GOA:Q7CGH6,InterPro:IPR001241,InterPro:IPR002288,InterPro:IPR003594,InterPro:IPR005737,InterPro:IPR006171,InterPro:IPR013506,InterPro:IPR013759,InterPro:IPR013760,InterPro:IPR014721,InterPro:IPR018522,InterPro:IPR020568,UniProtKB/TrEMBL:Q7CGH6,NCBI_GP:CAL19345.1;Name=CAL19345.1;Note=Similar to Escherichia coli topoisomerase IV subunit B ParE SW:PARE_ECOLI (P20083) (630 aa) fasta scores: E(): 0%2C 91.0%25 id in 631 aa%2C and to Salmonella typhimurium topoisomerase IV subunit B ParE SW:PARE_SALTY (P31598) (630 aa) fasta scores: E(): 0%2C 90.6%25 id in 631 aa;gbkey=CDS;gene=nfxD;product=topoisomerase IV subunit B;protein_id=CAL19345.1;transl_table=11
AL590842.1	EMBL	sequence_feature	727066	728673	.	+	.	ID=id1572;Note=Pfam match to entry PF00204 DNA_topoisoII%2C DNA topoisomerase II (N-terminal region)%2C score 897.60%2C E-value 3.8e-266;gbkey=misc_feature;gene=nfxD;inference=protein motif:PF00204
AL590842.1	EMBL	sequence_feature	728284	728310	.	+	.	ID=id1573;Note=PS00177 DNA topoisomerase II signature.;gbkey=misc_feature;gene=nfxD;inference=protein motif:ProSite:PS00177
AL590842.1	EMBL	sequence_feature	728689	728898	.	+	.	ID=id1574;Note=Pfam match to entry PF00986 DNA_gyraseB_C%2C DNA gyrase B subunit%2C carboxyl terminus%2C score 110.50%2C E-value 3.2e-29;gbkey=misc_feature;gene=nfxD;inference=protein motif:PF00986
AL590842.1	EMBL	gene	728935	729846	.	+	.	ID=gene667;Name=crgA;gbkey=Gene;gene=crgA;gene_biotype=protein_coding;locus_tag=YPO0669
AL590842.1	EMBL	CDS	728935	729846	.	+	0	ID=cds655;Parent=gene667;Dbxref=GOA:Q7CGH7,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CGH7,NCBI_GP:CAL19346.1;Name=CAL19346.1;Note=Similar to Neisseria meningitidis transcriptional regulator controlling adhesion to epithelial cells CrgA TR:Q9JPU9 (EMBL:AF190471) (299 aa) fasta scores: E(): 0%2C44.6%25 id in 294 aa%2C and to Pseudomonas aeruginosa probable transcriptional regulator PA1859 TR:AAG05248 (EMBL:AE004612) (295 aa) fasta scores: E(): 0%2C 63.8%25 id in 293 aa;gbkey=CDS;gene=crgA;inference=similar to sequence:INSDC:AF190471;product=LysR-family regulatory protein;protein_id=CAL19346.1;transl_table=11
AL590842.1	EMBL	sequence_feature	728947	729366	.	+	.	ID=id1575;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 128.80%2C E-value 9.9e-35;gbkey=misc_feature;gene=crgA;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	728986	729051	.	+	.	ID=id1576;Note=Predicted helix-turn-helix motif with score 1163 (+3.15 SD) at aa 18-39%2C sequence GSITAAAEQRSQTTSGISRALS;gbkey=misc_feature;gene=crgA
AL590842.1	EMBL	sequence_feature	728989	729081	.	+	.	ID=id1577;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature.;gbkey=misc_feature;gene=crgA;inference=protein motif:ProSite:PS00044
AL590842.1	EMBL	gene	729904	730488	.	-	.	ID=gene668;Name=mda66;gbkey=Gene;gene=mda66;gene_biotype=protein_coding;gene_synonym=mdaB;locus_tag=YPO0670
AL590842.1	EMBL	CDS	729904	730488	.	-	0	ID=cds656;Parent=gene668;Dbxref=GOA:Q7CGH8,InterPro:IPR003680,InterPro:IPR029039,PDB:3RPE,UniProtKB/TrEMBL:Q7CGH8,NCBI_GP:CAL19347.1;Name=CAL19347.1;Note=Similar to Escherichia coli modulator of drug activity B MdaB SW:MDAB_ECOLI (P40717) (193 aa) fasta scores: E(): 0%2C 67.9%25 id in 190 aa%2C and to Pseudomonas aeruginosa conserved hypothetical protein PA2580 TR:AAG05968 (EMBL:AE004686) (196 aa) fasta scores: E(): 0%2C60.6%25 id in 188 aa;gbkey=CDS;gene=mda66;inference=similar to sequence:INSDC:AE004686;product=putative modulator of drug activity;protein_id=CAL19347.1;transl_table=11
AL590842.1	EMBL	sequence_feature	730135	730158	.	-	.	ID=id1578;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=mda66;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	730792	733065	.	+	.	ID=gene669;Name=parC;gbkey=Gene;gene=parC;gene_biotype=protein_coding;locus_tag=YPO0671
AL590842.1	EMBL	CDS	730792	733065	.	+	0	ID=cds657;Parent=gene669;Dbxref=GOA:Q7CGH9,InterPro:IPR002205,InterPro:IPR005742,InterPro:IPR006691,InterPro:IPR013758,InterPro:IPR013760,InterPro:IPR024946,UniProtKB/TrEMBL:Q7CGH9,NCBI_GP:CAL19348.1;Name=CAL19348.1;Note=Similar to Serratia marcescens DNA topoisomerase IV subunit A ParC TR:Q9KIR1 (EMBL:AF227958) (756 aa) fasta scores: E(): 0%2C 88.1%25 id in 757 aa%2C and to Escherichia coli DNA topoisomerase IV subunit A ParC SW:PARC_ECOLI (P20082) (752 aa) fasta scores: E(): 0%2C 82.3%25 id in 751 aa;gbkey=CDS;gene=parC;inference=similar to sequence:INSDC:AF227958;product=DNA topoisomerase IV subunit A;protein_id=CAL19348.1;transl_table=11
AL590842.1	EMBL	sequence_feature	730888	732222	.	+	.	ID=id1579;Note=Pfam match to entry PF00521 DNA_topoisoIV%2C DNA gyrase/topoisomerase IV%2C subunit A%2C score 857.80%2C E-value 2.9e-270;gbkey=misc_feature;gene=parC;inference=protein motif:PF00521
AL590842.1	EMBL	sequence_feature	732640	732663	.	+	.	ID=id1580;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=parC;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	733354	734085	.	+	.	ID=gene670;Name=parF;gbkey=Gene;gene=parF;gene_biotype=protein_coding;gene_synonym=plsC;locus_tag=YPO0672
AL590842.1	EMBL	CDS	733354	734085	.	+	0	ID=cds658;Parent=gene670;Dbxref=GOA:Q74RN5,InterPro:IPR002123,InterPro:IPR004552,UniProtKB/TrEMBL:Q74RN5,NCBI_GP:CAL19349.1;Name=CAL19349.1;Note=Similar to Escherichia coli 1-acyl-sn-glycerol-3-phosphate acyltransferase PlsC SW:PLSC_ECOLI (P26647) (245 aa) fasta scores: E(): 0%2C 71.7%25 id in 244 aa%2C and to Salmonella typhimurium 1-acyl-sn-glycerol-3-phosphate acyltransferase PlsC SW:PLSC_SALTY (P26974) (245 aa) fasta scores: E(): 0%2C 71.7%25 id in 244 aa;gbkey=CDS;gene=parF;product=putative acyltransferase;protein_id=CAL19349.1;transl_table=11
AL590842.1	EMBL	sequence_feature	733357	733425	.	+	.	ID=id1581;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=parF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	733525	734046	.	+	.	ID=id1582;Note=Pfam match to entry PF01553 Acyltransferase%2CAcyltransferase%2C score 196.90%2C E-value 3.2e-55;gbkey=misc_feature;gene=parF;inference=protein motif:PF01553
AL590842.1	EMBL	gene	734264	735688	.	+	.	ID=gene671;Name=sufI;gbkey=Gene;gene=sufI;gene_biotype=protein_coding;locus_tag=YPO0673
AL590842.1	EMBL	CDS	734264	735688	.	+	0	ID=cds659;Parent=gene671;Dbxref=GOA:Q7CGI0,InterPro:IPR006311,InterPro:IPR008972,InterPro:IPR011706,InterPro:IPR011707,InterPro:IPR026589,NCBI_GP:CAL19350.1;Name=CAL19350.1;Note=Similar to Escherichia coli protein involved in cell division%2C SufI SW:SUFI_ECOLI (P26648) (470 aa) fasta scores: E(): 0%2C 74.2%25 id in 472 aa%2C and to Salmonella typhimurium protein involved in cell division%2C SufI SW:SUFI_SALTY (P40799) (470 aa) fasta scores: E(): 0%2C 73.0%25 id in 471 aa;gbkey=CDS;gene=sufI;product=putative cell division protein;protein_id=CAL19350.1;transl_table=11
AL590842.1	EMBL	pseudogene	735996	738340	.	+	.	ID=gene672;Name=YPO0674;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO0674;pseudo=true
AL590842.1	EMBL	CDS	735996	738340	.	+	0	ID=cds660;Parent=gene672;Note=Similar to Escherichia coli hypothetical protein YgiQ SW:YGIQ_ECOLI (Q46861) (413 aa) fasta scores: E(): 0%2C82.1%25 id in 725 aa%2C and to Vibrio cholerae hypothetical protein VC1711 TR:Q9KRD1 (EMBL:AE004249) (789 aa) fasta scores: E(): 0%2C 61.3%25 id in 776 aa. Contains a frameshift after codon 510. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=similar to sequence:INSDC:AE004249;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	737121	737183	.	+	.	ID=id1583;Note=PS01278 Uncharacterized protein family UPF0004 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01278
AL590842.1	EMBL	gene	738362	739195	.	-	.	ID=gene673;Name=YPO0676;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0676
AL590842.1	EMBL	CDS	738362	739195	.	-	0	ID=cds661;Parent=gene673;Dbxref=GOA:Q8ZI40,InterPro:IPR001395,InterPro:IPR018170,InterPro:IPR020471,InterPro:IPR023210,NCBI_GP:CAL19352.1;Name=CAL19352.1;Note=Similar to Corynebacterium sp. 2%2C5-diketo-D-gluconic acid reductase TR:P06632 (EMBL:M12799) (278 aa) fasta scores: E(): 0%2C 53.5%25 id in 269 aa%2C and to Escherichia coli hypothetical oxidoreductase YqhE SW:YQHE_ECOLI (Q46857) (275 aa) fasta scores: E(): 0%2C 73.7%25 id in 274 aa;gbkey=CDS;inference=similar to sequence:INSDC:M12799;product=putative aldo/keto reductase family protein;protein_id=CAL19352.1;transl_table=11
AL590842.1	EMBL	sequence_feature	738401	739171	.	-	.	ID=id1584;Note=Pfam match to entry PF00248 aldo_ket_red%2C Aldo/keto reductase family%2C score 466.40%2C E-value 2.3e-136;gbkey=misc_feature;inference=protein motif:PF00248
AL590842.1	EMBL	sequence_feature	738464	738511	.	-	.	ID=id1585;Note=PS00063 Aldo/keto reductase family putative active site signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00063
AL590842.1	EMBL	sequence_feature	738776	738829	.	-	.	ID=id1586;Note=PS00062 Aldo/keto reductase family signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00062
AL590842.1	EMBL	sequence_feature	739022	739075	.	-	.	ID=id1587;Note=PS00798 Aldo/keto reductase family signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS00798
AL590842.1	EMBL	gene	739342	739551	.	+	.	ID=gene674;Name=YPO0677;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0677
AL590842.1	EMBL	CDS	739342	739551	.	+	0	ID=cds662;Parent=gene674;Dbxref=UniProtKB/TrEMBL:Q7CGI1,NCBI_GP:CAL19353.1;Name=CAL19353.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19353.1;transl_table=11
AL590842.1	EMBL	gene	739614	740771	.	-	.	ID=gene675;Name=YPO0678;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0678
AL590842.1	EMBL	CDS	739614	740771	.	-	0	ID=cds663;Parent=gene675;Dbxref=GOA:Q7CGI2,InterPro:IPR001670,InterPro:IPR018211,UniProtKB/TrEMBL:Q7CGI2,NCBI_GP:CAL19354.1;Name=CAL19354.1;Note=Similar to Clostridium acetobutylicum NADH-dependent butanol dehydrogenase A BdhA SW:ADHA_CLOAB (Q04944) (389 aa) fasta scores: E(): 0%2C 36.4%25 id in 387 aa%2C and to Escherichia coli hypothetical oxidoreductase YqhD SW:YQHD_ECOLI (Q46856) (387 aa) fasta scores: E(): 0%2C 77.2%25 id in 386 aa;gbkey=CDS;product=putative iron-containing alcohol dehydrogenase;protein_id=CAL19354.1;transl_table=11
AL590842.1	EMBL	sequence_feature	739749	740747	.	-	.	ID=id1588;Note=Pfam match to entry PF00465 Fe-ADH%2C Iron-containing alcohol dehydrogenases%2C score 144.40%2C E-value 2e-40;gbkey=misc_feature;inference=protein motif:PF00465
AL590842.1	EMBL	sequence_feature	739926	739988	.	-	.	ID=id1589;Note=PS00060 Iron-containing alcohol dehydrogenases signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00060
AL590842.1	EMBL	sequence_feature	740175	740261	.	-	.	ID=id1590;Note=PS00913 Iron-containing alcohol dehydrogenases signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS00913
AL590842.1	EMBL	gene	741169	742062	.	+	.	ID=gene676;Name=YPO0679;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0679
AL590842.1	EMBL	CDS	741169	742062	.	+	0	ID=cds664;Parent=gene676;Dbxref=GOA:Q7CGI3,InterPro:IPR009057,InterPro:IPR009594,InterPro:IPR018060,UniProtKB/TrEMBL:Q7CGI3,NCBI_GP:CAL19355.1;Name=CAL19355.1;Note=Similar to Escherichia coli hypothetical transcriptional regulator YqhC SW:YQHC_ECOLI (Q46855) (318 aa) fasta scores: E(): 0%2C 61.4%25 id in 285 aa%2C and to Pseudomonas aeruginosa probable transcriptional regulator PA2276 TR:AAG05664 (EMBL:AE004653) (296 aa) fasta scores: E(): 0%2C 48.3%25 id in 290 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004653;product=AraC-family regulatory protein;protein_id=CAL19355.1;transl_table=11
AL590842.1	EMBL	sequence_feature	741745	741879	.	+	.	ID=id1591;Note=PS00041 Bacterial regulatory proteins%2C araC family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00041
AL590842.1	EMBL	sequence_feature	741790	742050	.	+	.	ID=id1592;Note=Pfam match to entry PF00165 HTH_AraC%2C Bacterial regulatory helix-turn-helix proteins%2C araC family%2C score 86.60%2C E-value 4.9e-22;gbkey=misc_feature;inference=protein motif:PF00165
AL590842.1	EMBL	sequence_feature	741793	741858	.	+	.	ID=id1593;Note=Predicted helix-turn-helix motif with score 1346 (+3.77 SD) at aa 209-230%2C sequence LSVEQLAAEVNMSVSAFHHNFK;gbkey=misc_feature
AL590842.1	EMBL	gene	742154	742816	.	-	.	ID=gene677;Name=YPO0680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0680
AL590842.1	EMBL	CDS	742154	742816	.	-	0	ID=cds665;Parent=gene677;Dbxref=InterPro:IPR015414,UniProtKB/TrEMBL:Q7CGI4,NCBI_GP:CAL19356.1;Name=CAL19356.1;Note=Similar to Escherichia coli hypothetical protein YghB SW:YGHB_ECOLI (P33196) (219 aa) fasta scores: E(): 0%2C70.2%25 id in 215 aa%2C and to Escherichia coli hypothetical protein YqjA SW:YQJA_ECOLI (P42614) (220 aa) fasta scores: E(): 0%2C 60.9%25 id in 215 aa. Similar to YPO0574 (63.8%25 identity in 218 aa overlap).;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative DedA-family membrane protein;protein_id=CAL19356.1;transl_table=11
AL590842.1	EMBL	sequence_feature	742181	742246	.	-	.	ID=id1594;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	742247	742729	.	-	.	ID=id1595;Note=Pfam match to entry PF00597 DedA%2C DedA family%2C score 160.30%2C E-value 3.2e-44;gbkey=misc_feature;inference=protein motif:PF00597
AL590842.1	EMBL	sequence_feature	742292	742351	.	-	.	ID=id1596;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	742373	742438	.	-	.	ID=id1597;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	742592	742657	.	-	.	ID=id1598;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	742679	742744	.	-	.	ID=id1599;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	743009	744220	.	-	.	ID=gene678;Name=metC;gbkey=Gene;gene=metC;gene_biotype=protein_coding;locus_tag=YPO0681
AL590842.1	EMBL	CDS	743009	744220	.	-	0	ID=cds666;Parent=gene678;Dbxref=GOA:Q7CGI5,InterPro:IPR000277,InterPro:IPR006233,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q7CGI5,NCBI_GP:CAL19357.1;Name=CAL19357.1;Note=Similar to Escherichia coli cystathionine beta-lyase MetC SW:METC_ECOLI (P06721) (395 aa) fasta scores: E(): 0%2C70.3%25 id in 391 aa%2C and to Salmonella typhimurium cystathionine beta-lyase MetC SW:METC_SALTY (P18949) (395 aa) fasta scores: E(): 0%2C 69.6%25 id in 391 aa;gbkey=CDS;gene=metC;product=putative cystathionine beta-lyase;protein_id=CAL19357.1;transl_table=11
AL590842.1	EMBL	sequence_feature	743030	744187	.	-	.	ID=id1600;Note=Pfam match to entry PF01053 Cys_Met_Meta_PP%2C Cys/Met metabolism PLP-dependent enzyme%2C score 485.90%2C E-value 3.2e-142;gbkey=misc_feature;gene=metC;inference=protein motif:PF01053
AL590842.1	EMBL	sequence_feature	743558	743602	.	-	.	ID=id1601;Note=PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site.;gbkey=misc_feature;gene=metC;inference=protein motif:ProSite:PS00868
AL590842.1	EMBL	gene	745023	745736	.	+	.	ID=gene679;Name=YPO0682;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0682
AL590842.1	EMBL	CDS	745023	745736	.	+	0	ID=cds667;Parent=gene679;Dbxref=GOA:Q0WIZ0,InterPro:IPR002898,InterPro:IPR014164,UniProtKB/TrEMBL:Q0WIZ0,NCBI_GP:CAL19358.1;Name=CAL19358.1;Note=Similar to Escherichia coli biopolymer transport protein ExbB SW:EXBB_ECOLI (P18783) (244 aa) fasta scores: E(): 0%2C 70.8%25 id in 236 aa%2C and to Pseudomonas putida biopolymer transport protein ExbB SW:EXBB_PSEPU (Q05605) (329 aa) fasta scores: E(): 0%2C 62.7%25 id in 236 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=MotA/TolQ/ExbB proton channel family protein;protein_id=CAL19358.1;transl_table=11
AL590842.1	EMBL	sequence_feature	745062	745130	.	+	.	ID=id1602;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	745227	745643	.	+	.	ID=id1603;Note=Pfam match to entry PF01618 MotA_ExbB%2CMotA/TolQ/ExbB proton channel family%2C score 180.10%2C E-value 3.5e-50;gbkey=misc_feature;inference=protein motif:PF01618
AL590842.1	EMBL	sequence_feature	745392	745460	.	+	.	ID=id1604;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	745530	745598	.	+	.	ID=id1605;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	745740	746171	.	+	.	ID=gene680;Name=YPO0683;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0683
AL590842.1	EMBL	CDS	745740	746171	.	+	0	ID=cds668;Parent=gene680;Dbxref=GOA:Q7CGI6,InterPro:IPR003400,InterPro:IPR014170,UniProtKB/TrEMBL:Q7CGI6,NCBI_GP:CAL19359.1;Name=CAL19359.1;Note=Similar to Escherichia coli biopolymer transport protein ExbD SW:EXBD_ECOLI (P18784) (141 aa) fasta scores: E(): 0%2C 67.9%25 id in 140 aa%2C and to Pseudomonas putida biopolymer transport protein ExbD SW:EXBD_PSEPU (Q05606) (142 aa) fasta scores: E(): 2.6e-31%2C 67.1%25 id in 140 aa;gbkey=CDS;product=ExbD/TolR-family transport protein;protein_id=CAL19359.1;transl_table=11
AL590842.1	EMBL	sequence_feature	745770	746150	.	+	.	ID=id1606;Note=Pfam match to entry PF02472 ExbD%2C %2C score 101.80%2CE-value 1.4e-26;gbkey=misc_feature;inference=protein motif:PF02472
AL590842.1	EMBL	sequence_feature	745797	745865	.	+	.	ID=id1607;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	746186	756714	.	-	.	ID=id1608;Note=Region of DNA with a low CG%25 content%2C 36.64%25. Possible horizontal gene transfer;gbkey=misc_feature
AL590842.1	EMBL	gene	746268	747824	.	-	.	ID=gene681;Name=YPO0684;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0684
AL590842.1	EMBL	CDS	746268	747824	.	-	0	ID=cds669;Parent=gene681;Dbxref=InterPro:IPR002035,UniProtKB/TrEMBL:Q7CGI7,NCBI_GP:CAL19360.1;Name=CAL19360.1;Note=Similar to Listeria seeligeri hypothetical protein TR:O07686 (EMBL:X97014) (902 aa) fasta scores: E(): 2.7%2C20.7%25 id in 518 aa;gbkey=CDS;inference=similar to sequence:INSDC:X97014;product=putative membrane protein;protein_id=CAL19360.1;transl_table=11
AL590842.1	EMBL	sequence_feature	747687	747752	.	-	.	ID=id1609;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	747849	748355	.	-	.	ID=gene682;Name=YPO0685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0685
AL590842.1	EMBL	CDS	747849	748355	.	-	0	ID=cds670;Parent=gene682;Dbxref=UniProtKB/TrEMBL:Q0WIY7,NCBI_GP:CAL19361.1;Name=CAL19361.1;Note=Similar to Actinobacillus actinomycetemcomitans nonspecific tight adherence protein TadF TR:Q9S4A5 (EMBL:AF152598) (200 aa) fasta scores: E(): 0.0072%2C 25.3%25 id in 178 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF152598;product=conserved hypothetical protein;protein_id=CAL19361.1;transl_table=11
AL590842.1	EMBL	gene	748405	748875	.	-	.	ID=gene683;Name=YPO0686;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0686
AL590842.1	EMBL	CDS	748405	748875	.	-	0	ID=cds671;Parent=gene683;Dbxref=InterPro:IPR012495,UniProtKB/TrEMBL:Q0WIY6,NCBI_GP:CAL19362.1;Name=CAL19362.1;Note=Similar to Actinobacillus actinomycetemcomitans nonspecific tight adherence protein TadE TR:Q9S4A6 (EMBL:AF152598) (191 aa) fasta scores: E(): 0.00022%2C 29.0%25 id in 176 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF152598;product=putative membrane protein;protein_id=CAL19362.1;transl_table=11
AL590842.1	EMBL	sequence_feature	748771	748836	.	-	.	ID=id1610;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	748875	749609	.	-	.	ID=gene684;Name=YPO0687;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0687
AL590842.1	EMBL	CDS	748875	749609	.	-	0	ID=cds672;Parent=gene684;Dbxref=InterPro:IPR011990,UniProtKB/TrEMBL:Q0WIY5,NCBI_GP:CAL19363.1;Name=CAL19363.1;Note=Similar to Pasteurella multocida putative nonspecific tight adherence protein TadD TR:Q9L6A6 (EMBL:AF237933) (257 aa) fasta scores: E(): 1.5e-31%2C 42.1%25 id in 228 aa%2C and to Actinobacillus actinomycetemcomitans nonspecific tight adherence protein TadD TR:Q9S4A7 (EMBL:AF152598) (253 aa) fasta scores: E(): 1.6e-26%2C 37.6%25 id in 234 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF237933;product=conserved hypothetical protein;protein_id=CAL19363.1;transl_table=11
AL590842.1	EMBL	gene	749629	750462	.	-	.	ID=gene685;Name=YPO0688;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0688
AL590842.1	EMBL	CDS	749629	750462	.	-	0	ID=cds673;Parent=gene685;Dbxref=InterPro:IPR018076,UniProtKB/TrEMBL:Q7CGI8,NCBI_GP:CAL19364.1;Name=CAL19364.1;Note=Similar to Actinobacillus actinomycetemcomitans putative nonspecific tight adherence protein TadC TR:Q9S4A8 (EMBL:AF152598) (288 aa) fasta scores: E(): 9.5e-26%2C 30.9%25 id in 285 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF152598;product=putative exported protein;protein_id=CAL19364.1;transl_table=11
AL590842.1	EMBL	sequence_feature	750112	750168	.	-	.	ID=id1611;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	750199	750264	.	-	.	ID=id1612;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	750459	751334	.	-	.	ID=gene686;Name=YPO0689;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0689
AL590842.1	EMBL	CDS	750459	751334	.	-	0	ID=cds674;Parent=gene686;Dbxref=InterPro:IPR018076,UniProtKB/TrEMBL:Q74RM1,NCBI_GP:CAL19365.1;Name=CAL19365.1;Note=Similar to Actinobacillus actinomycetemcomitans putative nonspecific tight adherence protein TabB TR:AAD38173 (EMBL:AF152598) (295 aa) fasta scores: E(): 0%2C33.8%25 id in 293 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF152598;product=putative membrane protein;protein_id=CAL19365.1;transl_table=11
AL590842.1	EMBL	sequence_feature	750486	750536	.	-	.	ID=id1613;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	750582	750638	.	-	.	ID=id1614;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	751011	751067	.	-	.	ID=id1615;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	751080	751136	.	-	.	ID=id1616;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	751272	751322	.	-	.	ID=id1617;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	751331	752617	.	-	.	ID=gene687;Name=YPO0690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0690
AL590842.1	EMBL	CDS	751331	752617	.	-	0	ID=cds675;Parent=gene687;Dbxref=GOA:Q7CGI9,InterPro:IPR001482,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CGI9,NCBI_GP:CAL19366.1;Name=CAL19366.1;Note=Similar to Caulobacter crescentus pilus biogenesis protein PilB TR:Q9L714 (EMBL:AF229646) (501 aa) fasta scores: E(): 0%2C 45.9%25 id in 405 aa%2C and to Actinobacillus actinomycetemcomitans putative nonspecific tight adherence protein TadA TR:AAD38172 (EMBL:AF152598) (426 aa) fasta scores: E(): 0%2C 63.5%25 id in 414 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF229646;product=putative type II secretion protein;protein_id=CAL19366.1;transl_table=11
AL590842.1	EMBL	sequence_feature	751658	752017	.	-	.	ID=id1618;Note=Pfam match to entry PF00437 GSPII_E%2C Bacterial type II secretion system protein%2C score 65.80%2C E-value 8.3e-19;gbkey=misc_feature;inference=protein motif:PF00437
AL590842.1	EMBL	sequence_feature	751982	752005	.	-	.	ID=id1619;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	752629	753861	.	-	.	ID=gene688;Name=YPO0691;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0691
AL590842.1	EMBL	CDS	752629	753861	.	-	0	ID=cds676;Parent=gene688;Dbxref=InterPro:IPR027417,UniProtKB/TrEMBL:Q7CGJ0,NCBI_GP:CAL19367.1;Name=CAL19367.1;Note=Poor database hits. Weakly similar to Synechocystis sp hypothetical protein SLR0105 TR:Q55876 (EMBL:D64004) (462 aa) fasta scores: E(): 3.3%2C 21.1%25 id in 336 aa;gbkey=CDS;inference=similar to sequence:INSDC:D64004;product=hypothetical protein;protein_id=CAL19367.1;transl_table=11
AL590842.1	EMBL	pseudogene	754057	755372	.	-	.	ID=gene689;Name=YPO0692;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO0692;pseudo=true
AL590842.1	EMBL	CDS	754057	755372	.	-	0	ID=cds677;Parent=gene689;Note=Similar to Actinobacillus actinomycetemcomitans rough colony protein A RcpA TR:Q9X6J1 (EMBL:AF139249) (460 aa) fasta scores: E(): 2.5e-32%2C 36.9%25 id in 455 aa%2C and to Rhizobium sp hypothetical protein Y4XJ SW:Y4XJ_RHISN (P55702) (423 aa) fasta scores: E(): 2.2e-18%2C 29.8%25 id in 400 aa. Contains a frameshift after codon 284. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=similar to sequence:INSDC:AF139249;product=putative membrane protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	755283	755333	.	-	.	ID=id1620;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	755369	756235	.	-	.	ID=gene690;Name=YPO0694;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0694
AL590842.1	EMBL	CDS	755369	756235	.	-	0	ID=cds678;Parent=gene690;Dbxref=UniProtKB/TrEMBL:Q7CGJ1,NCBI_GP:CAL19369.1;Name=CAL19369.1;Note=Similar to Actinobacillus actinomycetemcomitans membrane protein TR:O66152 (EMBL:AB005741) (274 aa) fasta scores: E(): 7.1e-05%2C 25.0%25 id in 300 aa;gbkey=CDS;inference=similar to sequence:INSDC:AB005741;product=putative membrane protein;protein_id=CAL19369.1;transl_table=11
AL590842.1	EMBL	sequence_feature	756167	756220	.	-	.	ID=id1621;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	756287	756709	.	-	.	ID=gene691;Name=YPO0695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0695
AL590842.1	EMBL	CDS	756287	756709	.	-	0	ID=cds679;Parent=gene691;Dbxref=GOA:Q7CGJ2,InterPro:IPR000045,UniProtKB/TrEMBL:Q7CGJ2,NCBI_GP:CAL19370.1;Name=CAL19370.1;Note=Similar to Actinobacillus actinomycetemcomitans membrane protein TR:O66151 (EMBL:AB005741) (142 aa) fasta scores: E(): 2.6e-15%2C 33.3%25 id in 129 aa%2C and to Caulobacter crescentus pilus biogenesis protein PilD TR:Q9L719 (EMBL:AF229646) (170 aa) fasta scores: E(): 0.061%2C 26.6%25 id in 158 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF229646;product=putative membrane protein;protein_id=CAL19370.1;transl_table=11
AL590842.1	EMBL	sequence_feature	756365	756430	.	-	.	ID=id1622;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	756491	756556	.	-	.	ID=id1623;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	756569	756625	.	-	.	ID=id1624;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	756647	756697	.	-	.	ID=id1625;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	repeat_region	756764	757475	.	+	.	ID=id1626;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	756909	757367	.	+	.	ID=gene692;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO0696
AL590842.1	EMBL	CDS	756909	757367	.	+	0	ID=cds680;Parent=gene692;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL19371.1;Name=CAL19371.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL19371.1;transl_table=11
AL590842.1	EMBL	sequence_feature	756963	757274	.	+	.	ID=id1627;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	repeat_region	757474	758185	.	+	.	ID=id1628;Note=Contains a 'A' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	757619	758077	.	+	.	ID=gene693;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO0697
AL590842.1	EMBL	CDS	757619	758077	.	+	0	ID=cds681;Parent=gene693;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL19372.1;Name=CAL19372.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541 element transposase Tn TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL19372.1;transl_table=11
AL590842.1	EMBL	sequence_feature	757673	757984	.	+	.	ID=id1629;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	758430	760910	.	+	.	ID=gene694;Name=YPO0698;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0698
AL590842.1	EMBL	CDS	758430	760910	.	+	0	ID=cds682;Parent=gene694;Dbxref=GOA:Q7CGJ4,InterPro:IPR000015,InterPro:IPR025885,InterPro:IPR025949,UniProtKB/TrEMBL:Q7CGJ4,NCBI_GP:CAL19373.1;Name=CAL19373.1;Note=Similar to Escherichia coli outer membrane usher protein PapC SW:PAPC_ECOLI (P07110) (836 aa) fasta scores: E(): 0%2C 48.4%25 id in 834 aa%2C and to Proteus mirabilis outer membrane usher protein MrpC TR:Q51904 (EMBL:Z32686) (871 aa) fasta scores: E(): 0%2C 45.8%25 id in 825 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z32686;product=outer membrane usher protein;protein_id=CAL19373.1;transl_table=11
AL590842.1	EMBL	sequence_feature	758502	760862	.	+	.	ID=id1630;Note=Pfam match to entry PF00577 Usher%2C Fimbrial Usher proteins%2C score 944.70%2C E-value 2.5e-280;gbkey=misc_feature;inference=protein motif:PF00577
AL590842.1	EMBL	gene	760928	761647	.	+	.	ID=gene695;Name=YPO0699;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0699
AL590842.1	EMBL	CDS	760928	761647	.	+	0	ID=cds683;Parent=gene695;Dbxref=GOA:Q7CGJ5,InterPro:IPR001829,InterPro:IPR008962,InterPro:IPR016147,InterPro:IPR016148,InterPro:IPR018046,UniProtKB/TrEMBL:Q7CGJ5,NCBI_GP:CAL19374.1;Name=CAL19374.1;Note=Similar to Escherichia coli fimbrial chaperone protein PapD SW:PAPD_ECOLI (P15319) (239 aa) fasta scores: E(): 0%2C 59.1%25 id in 232 aa%2C and to Proteus mirabilis pili chaperone protein MrpD TR:Q51905 (EMBL:Z32686) (252 aa) fasta scores: E(): 0%2C 55.5%25 id in 245 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z32686;product=fimbrial chaperone protein;protein_id=CAL19374.1;transl_table=11
AL590842.1	EMBL	sequence_feature	761012	761584	.	+	.	ID=id1631;Note=Pfam match to entry PF00345 pili_assembly%2CGram-negative pili assembly chaperone%2C score 231.20%2CE-value 3e-67;gbkey=misc_feature;inference=protein motif:PF00345
AL590842.1	EMBL	sequence_feature	761222	761275	.	+	.	ID=id1632;Note=PS00635 Gram-negative pili assembly chaperone signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00635
AL590842.1	EMBL	sequence_feature	761453	761476	.	+	.	ID=id1633;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	761672	762778	.	+	.	ID=gene696;Name=YPO0700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0700
AL590842.1	EMBL	CDS	761672	762778	.	+	0	ID=cds684;Parent=gene696;Dbxref=GOA:Q7CGJ6,InterPro:IPR000259,InterPro:IPR008966,UniProtKB/TrEMBL:Q7CGJ6,NCBI_GP:CAL19375.1;Name=CAL19375.1;Note=Similar to Escherichia coli fimbrial lectin GafD TR:Q47341 (EMBL:L33969) (343 aa) fasta scores: E(): 2.9e-06%2C 23.6%25 id in 360 aa%2C and to Escherichia coli adhesin F17d-G TR:Q47199 (EMBL:L77091) (344 aa) fasta scores: E(): 3.8e-06%2C 24.6%25 id in 370 aa;gbkey=CDS;inference=similar to sequence:INSDC:L77091;product=Fimbrial protein;protein_id=CAL19375.1;transl_table=11
AL590842.1	EMBL	sequence_feature	761720	761788	.	+	.	ID=id1634;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	761846	761905	.	+	.	ID=id1635;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	761939	762007	.	+	.	ID=id1636;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	762308	762775	.	+	.	ID=id1637;Note=Pfam match to entry PF00419 Fimbrial%2C Fimbrial proteins%2C score 18.80%2C E-value 1.9e-06;gbkey=misc_feature;inference=protein motif:PF00419
AL590842.1	EMBL	gene	762990	764003	.	-	.	ID=gene697;Name=YPO0701;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0701
AL590842.1	EMBL	CDS	762990	764003	.	-	0	ID=cds685;Parent=gene697;Dbxref=InterPro:IPR002491,UniProtKB/TrEMBL:Q0WIX3,NCBI_GP:CAL19376.1;Name=CAL19376.1;Note=Similar to Escherichia coli siderophore ferrienterobactin-binding periplasmic protein precursor FepB SW:FEPB_ECOLI (P14609) (318 aa) fasta scores: E(): 0%2C53.9%25 id in 293 aa%2C and to Pseudomonas aeruginosa ferrienterobactin-binding periplasmic protein FepB TR:AAG07546 (EMBL:AE004832) (301 aa) fasta scores: E(): 6.1e-32%2C 38.1%25 id in 278 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004832;product=periplasmic binding protein;protein_id=CAL19376.1;transl_table=11
AL590842.1	EMBL	sequence_feature	763095	763856	.	-	.	ID=id1638;Note=Pfam match to entry PF01497 Peripla_BP_2%2CPeriplasmic binding protein%2C score 120.10%2C E-value 4.1e-32;gbkey=misc_feature;inference=protein motif:PF01497
AL590842.1	EMBL	sequence_feature	763209	763232	.	-	.	ID=id1639;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	764010	764922	.	-	.	ID=id1640;Note=Region of noncoding DNA with a low GC%25 content%2C27.6%25;gbkey=misc_feature
AL590842.1	EMBL	gene	764925	765920	.	+	.	ID=gene698;Name=YPO0702;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0702
AL590842.1	EMBL	CDS	764925	765920	.	+	0	ID=cds686;Parent=gene698;Dbxref=UniProtKB/TrEMBL:Q7CGJ7,NCBI_GP:CAL19377.1;Name=CAL19377.1;Note=Poor database hits. Weakly similar to an internal region of Arabidopsis thaliana protein YUP8H12R.30 TR:O64543 (EMBL:AC002986) (566 aa) fasta scores: E(): 9.1%2C26.8%25 id in 123 aa;gbkey=CDS;inference=similar to sequence:INSDC:AC002986;product=putative exported protein;protein_id=CAL19377.1;transl_table=11
AL590842.1	EMBL	gene	766012	766581	.	-	.	ID=gene699;Name=YPO0703;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0703
AL590842.1	EMBL	CDS	766012	766581	.	-	0	ID=cds687;Parent=gene699;Dbxref=InterPro:IPR021326,UniProtKB/TrEMBL:Q0WIX1,NCBI_GP:CAL19378.1;Name=CAL19378.1;Note=Poor database matches%2C some similarity to internal regions of Mycobacterium leprae hypothetical 25.3 kDa protein MLCB458.05 TR:Q9X7E1 (EMBL:AL049478) (239 aa) fasta scores: E(): 3.7%2C 24.4%25 id in 160 aa%2C and to Vibrio cholerae hypothetical protein VC1420 TR:Q9KS41 (EMBL:AE004220) (245 aa) fasta scores: E(): 3.7%2C 24.4%25 id in 176 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL049478;product=putative lipoprotein;protein_id=CAL19378.1;transl_table=11
AL590842.1	EMBL	sequence_feature	766528	766560	.	-	.	ID=id1641;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	pseudogene	766796	768887	.	-	.	ID=gene700;Name=YPO0704;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO0704;pseudo=true
AL590842.1	EMBL	CDS	766796	768887	.	-	0	ID=cds688;Parent=gene700;Note=Similar to C-terminus of Escherichia coli flagellar assembly protein FhiA SW:FHIA_ECOLI (Q47153) (579 aa) fasta scores: E(): 0%2C 63.9%25 id in 573 aa%2C and to the full length Vibrio parahaemolyticus polar flagellar assembly protein FlhA TR:Q9Z6F4 (EMBL:AF069392) (699 aa) fasta scores: E(): 0%2C 46.1%25 id in 683 aa. Contains a frameshift after codon 424. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=similar to sequence:INSDC:AF069392;product=flagellar assembly protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	766817	767581	.	-	.	ID=id1642;Note=Pfam match to entry PF00771 FHIPEP%2C FHIPEP family%2Cscore 136.30%2C E-value 4e-39;gbkey=misc_feature;inference=protein motif:PF00771
AL590842.1	EMBL	sequence_feature	767610	768815	.	-	.	ID=id1643;Note=Pfam match to entry PF00771 FHIPEP%2C FHIPEP family%2Cscore 667.30%2C E-value 8e-197;gbkey=misc_feature;inference=protein motif:PF00771
AL590842.1	EMBL	sequence_feature	768393	768464	.	-	.	ID=id1644;Note=PS00994 Bacterial export FHIPEP family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00994
AL590842.1	EMBL	gene	767964	768029	.	-	.	ID=gene701;Name=YPO0705;gbkey=Gene;gene_biotype=other;locus_tag=YPO0705
AL590842.1	EMBL	sequence_feature	767964	768029	.	-	.	ID=id1645;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	768099	768164	.	-	.	ID=id1646;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	768210	768275	.	-	.	ID=id1647;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	768483	768548	.	-	.	ID=id1648;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	768609	768674	.	-	.	ID=id1649;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	768714	768764	.	-	.	ID=id1650;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	768780	768836	.	-	.	ID=id1651;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	768099	768164	.	-	.	ID=gene702;Name=YPO0705;gbkey=Gene;gene_biotype=other;locus_tag=YPO0705
AL590842.1	EMBL	gene	768210	768275	.	-	.	ID=gene703;Name=YPO0705;gbkey=Gene;gene_biotype=other;locus_tag=YPO0705
AL590842.1	EMBL	gene	768483	768548	.	-	.	ID=gene704;Name=YPO0705;gbkey=Gene;gene_biotype=other;locus_tag=YPO0705
AL590842.1	EMBL	gene	768609	768674	.	-	.	ID=gene705;Name=YPO0705;gbkey=Gene;gene_biotype=other;locus_tag=YPO0705
AL590842.1	EMBL	gene	768714	768764	.	-	.	ID=gene706;Name=YPO0705;gbkey=Gene;gene_biotype=other;locus_tag=YPO0705
AL590842.1	EMBL	gene	768780	768836	.	-	.	ID=gene707;Name=YPO0705;gbkey=Gene;gene_biotype=other;locus_tag=YPO0705
AL590842.1	EMBL	gene	768877	770010	.	-	.	ID=gene708;Name=flhB;gbkey=Gene;gene=flhB;gene_biotype=protein_coding;locus_tag=YPO0706
AL590842.1	EMBL	CDS	768877	770010	.	-	0	ID=cds689;Parent=gene708;Dbxref=GOA:Q3V8F5,InterPro:IPR006135,InterPro:IPR006136,InterPro:IPR029025,UniProtKB/TrEMBL:Q3V8F5,NCBI_GP:CAL19380.1;Name=CAL19380.1;Note=Similar to Yersinia enterocolitica flagellar biosynthetic protein FlhB SW:FLHB_YEREN (Q56886) (383 aa) fasta scores: E(): 0%2C 35.0%25 id in 389 aa%2C and to Pseudomonas aeruginosa probable flagellar biosynthetic protein FlhB TR:AAG04838 (EMBL:AE004574) (378 aa) fasta scores: E(): 0%2C 38.2%25 id in 377 aa;gbkey=CDS;gene=flhB;inference=similar to sequence:INSDC:AE004574;product=putative flagellar assembly protein;protein_id=CAL19380.1;transl_table=11
AL590842.1	EMBL	sequence_feature	768976	770001	.	-	.	ID=id1652;Note=Pfam match to entry PF01312 Bac_export_2%2C FlhB HrpN YscU SpaS Family%2C score 343.90%2C E-value 1.7e-99;gbkey=misc_feature;gene=flhB;inference=protein motif:PF01312
AL590842.1	EMBL	sequence_feature	769375	769440	.	-	.	ID=id1653;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=flhB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	769690	769755	.	-	.	ID=id1654;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=flhB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	769858	769914	.	-	.	ID=id1655;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=flhB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	770010	770783	.	-	.	ID=gene709;Name=fliR;gbkey=Gene;gene=fliR;gene_biotype=protein_coding;gene_synonym=mopE;locus_tag=YPO0707
AL590842.1	EMBL	CDS	770010	770783	.	-	0	ID=cds690;Parent=gene709;Dbxref=GOA:Q1MVQ2,InterPro:IPR002010,UniProtKB/TrEMBL:Q1MVQ2,NCBI_GP:CAL19381.1;Name=CAL19381.1;Note=Similar to Erwinia carotovora flagellar biosynthetic protein FliR SW:FLIR_ERWCA (P34202) (261 aa) fasta scores: E(): 4.9e-23%2C 33.6%25 id in 235 aa%2C and to Pseudomonas aeruginosa flagellar biosynthetic protein FliR TR:AAG04837 (EMBL:AE004574) (258 aa) fasta scores: E(): 1e-25%2C 37.8%25 id in 238 aa;gbkey=CDS;gene=fliR;inference=similar to sequence:INSDC:AE004574;product=putative flagellar assembly protein;protein_id=CAL19381.1;transl_table=11
AL590842.1	EMBL	sequence_feature	770028	770768	.	-	.	ID=id1656;Note=Pfam match to entry PF01311 Bac_export_1%2C Bacterial export proteins%2C family 1%2C score 127.90%2C E-value 1.9e-34;gbkey=misc_feature;gene=fliR;inference=protein motif:PF01311
AL590842.1	EMBL	sequence_feature	770082	770147	.	-	.	ID=id1657;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=fliR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	770169	770234	.	-	.	ID=id1658;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=fliR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	770343	770408	.	-	.	ID=id1659;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=fliR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	770472	770537	.	-	.	ID=id1660;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=fliR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	770583	770648	.	-	.	ID=id1661;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=fliR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	770688	770753	.	-	.	ID=id1662;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=fliR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	770790	771059	.	-	.	ID=gene710;Name=fliQ;gbkey=Gene;gene=fliQ;gene_biotype=protein_coding;locus_tag=YPO0708
AL590842.1	EMBL	CDS	770790	771059	.	-	0	ID=cds691;Parent=gene710;Dbxref=GOA:Q0WIW8,InterPro:IPR002191,InterPro:IPR006305,UniProtKB/TrEMBL:Q0WIW8,NCBI_GP:CAL19382.1;Name=CAL19382.1;Note=Similar to Vibrio parahaemolyticus polar flagellar assembly protein FliQ TR:Q9Z6F7 (EMBL:AF069392) (89 aa) fasta scores: E(): 4.1e-12%2C 44.3%25 id in 88 aa%2C and to Vibrio cholerae probable flagellar biosynthetic protein FliQ vc2122 TR:Q9KQ79 (EMBL:AE004285) (89 aa) fasta scores: E(): 3.5e-14%2C 50.0%25 id in 88 aa;gbkey=CDS;gene=fliQ;inference=similar to sequence:INSDC:AF069392;product=putative flagellar assembly protein;protein_id=CAL19382.1;transl_table=11
AL590842.1	EMBL	sequence_feature	770823	771041	.	-	.	ID=id1663;Note=Pfam match to entry PF01313 Bac_export_3%2C Bacterial export proteins%2C family 3%2C score 61.80%2C E-value 1.5e-14;gbkey=misc_feature;gene=fliQ;inference=protein motif:PF01313
AL590842.1	EMBL	sequence_feature	770847	770912	.	-	.	ID=id1664;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=fliQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	770949	771014	.	-	.	ID=id1665;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=fliQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	771064	771834	.	-	.	ID=gene711;Name=fliP;gbkey=Gene;gene=fliP;gene_biotype=protein_coding;locus_tag=YPO0709
AL590842.1	EMBL	CDS	771064	771834	.	-	0	ID=cds692;Parent=gene711;Dbxref=GOA:Q7CGJ8,InterPro:IPR005837,InterPro:IPR005838,UniProtKB/TrEMBL:Q7CGJ8,NCBI_GP:CAL19383.1;Name=CAL19383.1;Note=Similar to Vibrio parahaemolyticus polar flagellar assembly protein FliP TR:Q9Z6F8 (EMBL:AF069392) (289 aa) fasta scores: E(): 0%2C 52.5%25 id in 221 aa%2C and to Vibrio cholerae flagellar biosynthetic protein VC2123 TR:Q9KQ78 (EMBL:AE004285) (299 aa) fasta scores: E(): 0%2C 54.5%25 id in 222 aa;gbkey=CDS;gene=fliP;inference=similar to sequence:INSDC:AF069392;product=putative flagellar assembly protein;protein_id=CAL19383.1;transl_table=11
AL590842.1	EMBL	sequence_feature	771085	771660	.	-	.	ID=id1666;Note=Pfam match to entry PF00813 FliP%2C FliP family%2C score 314.10%2C E-value 1.7e-90;gbkey=misc_feature;gene=fliP;inference=protein motif:PF00813
AL590842.1	EMBL	sequence_feature	771181	771246	.	-	.	ID=id1667;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=fliP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	771244	771291	.	-	.	ID=id1668;Note=PS01060 Flagella transport protein fliP family signature 1.;gbkey=misc_feature;gene=fliP;inference=protein motif:ProSite:PS01060
AL590842.1	EMBL	sequence_feature	771607	771672	.	-	.	ID=id1669;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=fliP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	771718	771783	.	-	.	ID=id1670;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=fliP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	771831	772244	.	-	.	ID=gene712;Name=fliN;gbkey=Gene;gene=fliN;gene_biotype=protein_coding;gene_synonym=mopA;locus_tag=YPO0710
AL590842.1	EMBL	CDS	771831	772244	.	-	0	ID=cds693;Parent=gene712;Dbxref=GOA:Q7CGJ9,InterPro:IPR001172,InterPro:IPR001543,InterPro:IPR012826,UniProtKB/TrEMBL:Q7CGJ9,NCBI_GP:CAL19384.1;Name=CAL19384.1;Note=Similar to Vibrio parahaemolyticus polar flagellar switch protein FliN TR:Q9Z6G0 (EMBL:AF069392) (136 aa) fasta scores: E(): 6.9e-13%2C 38.1%25 id in 118 aa%2C and to C-terminal region of Erwinia carotovora flagellar motor switch protein FliN SW:FLIN_ERWCA (P35539) (106 aa) fasta scores: E(): 1e-08%2C 48.6%25 id in 72 aa;gbkey=CDS;gene=fliN;inference=similar to sequence:INSDC:AF069392;product=flagellar switch protein;protein_id=CAL19384.1;transl_table=11
AL590842.1	EMBL	sequence_feature	771852	772082	.	-	.	ID=id1671;Note=Pfam match to entry PF01052 SpoA%2C Surface presentation of antigens (SPOA) protein%2C score 71.50%2CE-value 1.8e-17;gbkey=misc_feature;gene=fliN;inference=protein motif:PF01052
AL590842.1	EMBL	gene	772237	773148	.	-	.	ID=gene713;Name=fliM;gbkey=Gene;gene=fliM;gene_biotype=protein_coding;locus_tag=YPO0711
AL590842.1	EMBL	CDS	772237	773148	.	-	0	ID=cds694;Parent=gene713;Dbxref=InterPro:IPR001543,UniProtKB/TrEMBL:Q0WIW5,NCBI_GP:CAL19385.1;Name=CAL19385.1;Note=Similar to Rhodobacter sphaeroides flagellar switch protein FliM TR:O85118 (EMBL:AF044254) (323 aa) fasta scores: E(): 0.29%2C 20.7%25 id in 276 aa%2C and to Buchnera aphidicola (subsp Acyrthosiphon pisum) putative motor switch protein FliM TR:BAB12800 (EMBL:AP001118) (315 aa) fasta scores: E(): 0.12%2C 20.2%25 id in 213 aa;gbkey=CDS;gene=fliM;inference=similar to sequence:INSDC:AP001118;product=putative flagellar motor switch protein;protein_id=CAL19385.1;transl_table=11
AL590842.1	EMBL	gene	773659	774687	.	+	.	ID=gene714;Name=flbD;gbkey=Gene;gene=flbD;gene_biotype=protein_coding;gene_synonym=fleR;locus_tag=YPO0712
AL590842.1	EMBL	CDS	773659	774687	.	+	0	ID=cds695;Parent=gene714;Dbxref=GOA:Q7CGK0,InterPro:IPR002078,InterPro:IPR002197,InterPro:IPR003593,InterPro:IPR009057,InterPro:IPR025662,InterPro:IPR025943,InterPro:IPR025944,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CGK0,NCBI_GP:CAL19386.1;Name=CAL19386.1;Note=Similar to C-terminal regions of Pseudomonas aeruginosa transcriptional activator FleR TR:Q51454 (EMBL:L41213) (473 aa) fasta scores: E(): 0%2C 50.0%25 id in 346 aa%2C and to Caulobacter crescentus transcriptional regulatory protein FlbD SW:FLBD_CAUCR (P17899) (455 aa) fasta scores: E(): 0%2C 42.4%25 id in 330 aa;gbkey=CDS;gene=flbD;inference=similar to sequence:INSDC:L41213;product=sigma-54 transcriptional regulatory protein;protein_id=CAL19386.1;transl_table=11
AL590842.1	EMBL	sequence_feature	773731	774396	.	+	.	ID=id1672;Note=Pfam match to entry PF00158 sigma54%2C Sigma-54 transcription factors%2C score 414.90%2C E-value 7.3e-121;gbkey=misc_feature;gene=flbD;inference=protein motif:PF00158
AL590842.1	EMBL	sequence_feature	773776	773817	.	+	.	ID=id1673;Note=PS00675 Sigma-54 interaction domain ATP-binding region A signature.;gbkey=misc_feature;gene=flbD;inference=protein motif:ProSite:PS00675
AL590842.1	EMBL	sequence_feature	773962	774009	.	+	.	ID=id1674;Note=PS00676 Sigma-54 interaction domain ATP-binding region B signature.;gbkey=misc_feature;gene=flbD;inference=protein motif:ProSite:PS00676
AL590842.1	EMBL	sequence_feature	774340	774369	.	+	.	ID=id1675;Note=PS00688 Sigma-54 interaction domain C-terminal part signature.;gbkey=misc_feature;gene=flbD;inference=protein motif:ProSite:PS00688
AL590842.1	EMBL	sequence_feature	774580	774645	.	+	.	ID=id1676;Note=Predicted helix-turn-helix motif with score 1434 (+4.07 SD) at aa 308-329%2C sequence GNKSKTAAFLGITPRALRYRLA;gbkey=misc_feature;gene=flbD
AL590842.1	EMBL	gene	774704	775084	.	+	.	ID=gene715;Name=fliE;gbkey=Gene;gene=fliE;gene_biotype=protein_coding;locus_tag=YPO0713
AL590842.1	EMBL	CDS	774704	775084	.	+	0	ID=cds696;Parent=gene715;Dbxref=GOA:Q7CGK1,InterPro:IPR001624,UniProtKB/TrEMBL:Q7CGK1,NCBI_GP:CAL19387.1;Name=CAL19387.1;Note=Similar to Pseudomonas aeruginosa FliE SW:FLIE_PSEAE (Q51462) (109 aa) fasta scores: E(): 1e-07%2C 44.5%25 id in 110 aa%2C and to Vibrio parahaemolyticus flagellar hook-basal body complex protein FliE TR:Q9LB18 (EMBL:AF069392) (103 aa) fasta scores: E(): 4e-06%2C 39.8%25 id in 98 aa;gbkey=CDS;gene=fliE;inference=similar to sequence:INSDC:AF069392;product=putative flagellar hook-basal body complex protein;protein_id=CAL19387.1;transl_table=11
AL590842.1	EMBL	sequence_feature	774842	775081	.	+	.	ID=id1677;Note=Pfam match to entry PF02049 FliE%2C Flagellar hook-basal body complex protein FliE%2C score 59.70%2C E-value 6.4e-14;gbkey=misc_feature;gene=fliE;inference=protein motif:PF02049
AL590842.1	EMBL	gene	775094	776734	.	+	.	ID=gene716;Name=fliF;gbkey=Gene;gene=fliF;gene_biotype=protein_coding;locus_tag=YPO0714
AL590842.1	EMBL	CDS	775094	776734	.	+	0	ID=cds697;Parent=gene716;Dbxref=GOA:Q7CGK2,InterPro:IPR000067,InterPro:IPR006182,InterPro:IPR013556,UniProtKB/TrEMBL:Q7CGK2,NCBI_GP:CAL19388.1;Name=CAL19388.1;Note=Similar to Pseudomonas aeruginosa flagellar M-ring protein FliF SW:FLIF_PSEAE (Q51463) (599 aa) fasta scores: E(): 2.9e-31%2C 30.8%25 id in 591 aa%2C and to Aquifex aeolicus flagellar M-ring protein FliF SW:FLIF_AQUAE (O67241) (489 aa) fasta scores: E(): 4e-29%2C 31.6%25 id in 455 aa;gbkey=CDS;gene=fliF;inference=protein motif:TMHMM:2.0;product=putative flagellar M-ring protein;protein_id=CAL19388.1;transl_table=11
AL590842.1	EMBL	sequence_feature	775133	775768	.	+	.	ID=id1678;Note=Pfam match to entry PF01514 YscJ_FliF%2C Secretory protein of YscJ/FliF family%2C score 164.70%2C E-value 1.5e-45;gbkey=misc_feature;gene=fliF;inference=protein motif:PF01514
AL590842.1	EMBL	sequence_feature	776354	776422	.	+	.	ID=id1679;Note=probable transmembrane helices predicted;gbkey=misc_feature;gene=fliF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	776775	777749	.	+	.	ID=gene717;Name=fla;gbkey=Gene;gene=fla;gene_biotype=protein_coding;gene_synonym=fliG;locus_tag=YPO0715
AL590842.1	EMBL	CDS	776775	777749	.	+	0	ID=cds698;Parent=gene717;Dbxref=GOA:Q0WIW1,InterPro:IPR000090,InterPro:IPR011002,InterPro:IPR028263,UniProtKB/TrEMBL:Q0WIW1,NCBI_GP:CAL19389.1;Name=CAL19389.1;Note=Similar to Escherichia coli flagellar motor switch protein FliG SW:FLIG_ECOLI (P31067) (331 aa) fasta scores: E(): 2.7e-20%2C 31.1%25 id in 318 aa%2C and to Salmonella typhimurium flagellar motor switch protein FliG SW:FLIG_SALTY (P15933) (331 aa) fasta scores: E(): 3.5e-21%2C31.4%25 id in 318 aa;gbkey=CDS;gene=fla;product=puative flagellar motor switch protein;protein_id=CAL19389.1;transl_table=11
AL590842.1	EMBL	sequence_feature	777393	777722	.	+	.	ID=id1680;Note=Pfam match to entry PF01706 FliG-C%2C FliG C-terminal domain%2C score 18.50%2C E-value 0.00019;gbkey=misc_feature;gene=fla;inference=protein motif:PF01706
AL590842.1	EMBL	gene	777751	778470	.	+	.	ID=gene718;Name=fliH;gbkey=Gene;gene=fliH;gene_biotype=protein_coding;locus_tag=YPO0716
AL590842.1	EMBL	CDS	777751	778470	.	+	0	ID=cds699;Parent=gene718;Dbxref=InterPro:IPR018035,InterPro:IPR019191,UniProtKB/TrEMBL:Q0WIW0,NCBI_GP:CAL19390.1;Name=CAL19390.1;Note=Similar to Vibrio parahaemolyticus polar flagellar assembly protein FliH TR:Q9Z6G6 (EMBL:AF069392) (266 aa) fasta scores: E(): 9e-11%2C 24.8%25 id in 210 aa%2C and to Escherichia coli flagellar assembly protein FliH SW:FLIH_ECOLI (P31068) (228 aa) fasta scores: E(): 7.5e-09%2C22.5%25 id in 209 aa;gbkey=CDS;gene=fliH;inference=similar to sequence:INSDC:AF069392;product=putative flagellar assembly protein;protein_id=CAL19390.1;transl_table=11
AL590842.1	EMBL	sequence_feature	777877	778368	.	+	.	ID=id1681;Note=Pfam match to entry PF02108 FliH%2C Flagellar assembly protein FliH%2C score 22.20%2C E-value 2.2e-05;gbkey=misc_feature;gene=fliH;inference=protein motif:PF02108
AL590842.1	EMBL	gene	778463	779803	.	+	.	ID=gene719;Name=fla;gbkey=Gene;gene=fla;gene_biotype=protein_coding;gene_synonym=flaC,fliI;locus_tag=YPO0717
AL590842.1	EMBL	CDS	778463	779803	.	+	0	ID=cds700;Parent=gene719;Dbxref=GOA:Q7CGK3,InterPro:IPR000194,InterPro:IPR003593,InterPro:IPR005714,InterPro:IPR020003,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CGK3,NCBI_GP:CAL19391.1;Name=CAL19391.1;Note=Similar to Salmonella typhimurium flagellum-specific ATP synthase FliI SW:FLII_SALTY (P26465) (456 aa) fasta scores: E(): 0%2C 52.5%25 id in 448 aa%2C and to Escherichia coli flagellum-specific ATP synthase FliI SW:FLII_ECOLI (P52612) (457 aa) fasta scores: E(): 0%2C 52.3%25 id in 444 aa. Similar to YPO1827 (52.1%25 identity in 445 aa overlap)%2C some sequence divergence at the N-terminus.;gbkey=CDS;gene=fla;product=putative flagellum-specific ATP synthase;protein_id=CAL19391.1;transl_table=11
AL590842.1	EMBL	sequence_feature	778547	779536	.	+	.	ID=id1682;Note=Pfam match to entry PF00006 ATP-synt_ab%2C ATP synthase alpha/beta family%2C score 301.10%2C E-value 1.3e-86;gbkey=misc_feature;gene=fla;inference=protein motif:PF00006
AL590842.1	EMBL	sequence_feature	778961	778984	.	+	.	ID=id1683;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=fla;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	779504	779533	.	+	.	ID=id1684;Note=PS00152 ATP synthase alpha and beta subunits signature.;gbkey=misc_feature;gene=fla;inference=protein motif:ProSite:PS00152
AL590842.1	EMBL	gene	779816	780190	.	+	.	ID=gene720;Name=YPO0718;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0718
AL590842.1	EMBL	CDS	779816	780190	.	+	0	ID=cds701;Parent=gene720;Dbxref=GOA:Q0WIV8,InterPro:IPR012823,UniProtKB/TrEMBL:Q0WIV8,NCBI_GP:CAL19392.1;Name=CAL19392.1;Note=no significant database hits. Glutamine rich protein%2C 22 out of the 124 amino acids are glutamine residues (22%25 of the protein);gbkey=CDS;product=hypothetical protein;protein_id=CAL19392.1;transl_table=11
AL590842.1	EMBL	gene	780518	780841	.	-	.	ID=gene721;Name=YPO0719;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0719
AL590842.1	EMBL	CDS	780518	780841	.	-	0	ID=cds702;Parent=gene721;Dbxref=GOA:Q0WIV7,InterPro:IPR007809,UniProtKB/TrEMBL:Q0WIV7,NCBI_GP:CAL19393.1;Name=CAL19393.1;Note=Poor database hits. Weakly similar to Homo sapiens HSPC043 protein TR:Q9NRY2 (EMBL:AF161411) (104 aa) fasta scores: E(): 0.71%2C 29.7%25 id in 74 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF161411;product=hypothetical protein;protein_id=CAL19393.1;transl_table=11
AL590842.1	EMBL	gene	780950	781216	.	-	.	ID=gene722;Name=YPO0720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0720
AL590842.1	EMBL	CDS	780950	781216	.	-	0	ID=cds703;Parent=gene722;Dbxref=GOA:Q7CGK4,InterPro:IPR007412,UniProtKB/TrEMBL:Q7CGK4,NCBI_GP:CAL19394.1;Name=CAL19394.1;Note=Similar to Vibrio parahaemolyticus lateral flagellar biosynthesis protein LfgM TR:Q56717 (EMBL:U51896) (93 aa) fasta scores: E(): 0.0083%2C 31.5%25 id in 73 aa%2C and to Escherichia coli negative regulator of flagellin synthesis FlgM SW:FLGM_ECOLI (P43532) (97 aa) fasta scores: E(): 3.7%2C26.0%25 id in 73 aa;gbkey=CDS;inference=similar to sequence:INSDC:U51896;product=putative flagellar regulatory protein;protein_id=CAL19394.1;transl_table=11
AL590842.1	EMBL	gene	781445	782158	.	-	.	ID=gene723;Name=flgA;gbkey=Gene;gene=flgA;gene_biotype=protein_coding;locus_tag=YPO0721
AL590842.1	EMBL	CDS	781445	782158	.	-	0	ID=cds704;Parent=gene723;Dbxref=InterPro:IPR013974,InterPro:IPR017585,UniProtKB/TrEMBL:Q0WIV5,NCBI_GP:CAL19395.1;Name=CAL19395.1;Note=Similar to Escherichia coli flagella basal body P-ring formation protein FlgA SW:FLGA_ECOLI (P75933) (219 aa) fasta scores: E(): 0.0022%2C 22.7%25 id in 185 aa%2C and to Vibrio parahaemolyticus possible flagella basal body P-ring formation protein LfgA TR:Q56718 (EMBL:U51896) (235 aa) fasta scores: E(): 8e-20%2C 28.9%25 id in 232 aa;gbkey=CDS;gene=flgA;inference=similar to sequence:INSDC:U51896;product=putative flagella basal body P-ring formation protein;protein_id=CAL19395.1;transl_table=11
AL590842.1	EMBL	gene	782351	782797	.	+	.	ID=gene724;Name=flgB;gbkey=Gene;gene=flgB;gene_biotype=protein_coding;gene_synonym=lfgB;locus_tag=YPO0722
AL590842.1	EMBL	CDS	782351	782797	.	+	0	ID=cds705;Parent=gene724;Dbxref=GOA:Q7CGK5,InterPro:IPR001444,InterPro:IPR006300,InterPro:IPR019776,UniProtKB/TrEMBL:Q7CGK5,NCBI_GP:CAL19396.1;Name=CAL19396.1;Note=Similar to Escherichia coli flagellar basal-body rod protein FlgB SW:FLGB_ECOLI (P75934) (137 aa) fasta scores: E(): 1.7e-05%2C 37.9%25 id in 140 aa%2C and to Vibrio parahaemolyticus potential basal-body rod protein LfgB TR:Q56719 (EMBL:U51896) (120 aa) fasta scores: E(): 2.8e-09%2C 43.2%25 id in 148 aa;gbkey=CDS;gene=flgB;inference=similar to sequence:INSDC:U51896;product=putative flagellar basal-body rod protein;protein_id=CAL19396.1;transl_table=11
AL590842.1	EMBL	sequence_feature	782375	782467	.	+	.	ID=id1685;Note=Pfam match to entry PF00460 flg_bb_rod%2C Flagella basal body rod proteins%2C score 24.00%2C E-value 0.00019;gbkey=misc_feature;gene=flgB;inference=protein motif:PF00460
AL590842.1	EMBL	sequence_feature	782393	782455	.	+	.	ID=id1686;Note=PS00588 Flagella basal body rod proteins signature.;gbkey=misc_feature;gene=flgB;inference=protein motif:ProSite:PS00588
AL590842.1	EMBL	gene	782800	783225	.	+	.	ID=gene725;Name=flgC;gbkey=Gene;gene=flgC;gene_biotype=protein_coding;gene_synonym=lfgC;locus_tag=YPO0723
AL590842.1	EMBL	CDS	782800	783225	.	+	0	ID=cds706;Parent=gene725;Dbxref=GOA:Q7CGK6,InterPro:IPR001444,InterPro:IPR006299,InterPro:IPR010930,InterPro:IPR019776,UniProtKB/TrEMBL:Q7CGK6,NCBI_GP:CAL19397.1;Name=CAL19397.1;Note=Similar to Escherichia coli flagellar basal-body rod protein FlgC SW:FLGC_ECOLI (P75935) (134 aa) fasta scores: E(): 5.2e-17%2C 46.1%25 id in 141 aa%2C and to Vibrio parahaemolyticus possible flagellar basal-body rod protein LfgC TR:Q56720 (EMBL:U51896) (144 aa) fasta scores: E(): 6.8e-28%2C 57.0%25 id in 142 aa;gbkey=CDS;gene=flgC;inference=similar to sequence:INSDC:U51896;product=putative flagellar basal-body rod protein;protein_id=CAL19397.1;transl_table=11
AL590842.1	EMBL	sequence_feature	782821	782892	.	+	.	ID=id1687;Note=Pfam match to entry PF00460 flg_bb_rod%2C Flagella basal body rod proteins%2C score 23.60%2C E-value 0.00025;gbkey=misc_feature;gene=flgC;inference=protein motif:PF00460
AL590842.1	EMBL	gene	783228	783884	.	+	.	ID=gene726;Name=flgD;gbkey=Gene;gene=flgD;gene_biotype=protein_coding;gene_synonym=lfgD;locus_tag=YPO0724
AL590842.1	EMBL	CDS	783228	783884	.	+	0	ID=cds707;Parent=gene726;Dbxref=InterPro:IPR005648,InterPro:IPR025963,InterPro:IPR025965,UniProtKB/TrEMBL:Q7CGK7,NCBI_GP:CAL19398.1;Name=CAL19398.1;Note=Similar to Escherichia coli basal-body rod modification protein FlgD SW:FLGD_ECOLI (P75936) (231 aa) fasta scores: E(): 5.4e-08%2C 31.7%25 id in 227 aa%2C and to Vibrio parahaemolyticus possible basal-body rod modification protein LfgD TR:Q56721 (EMBL:U51896) (227 aa) fasta scores: E(): 8.1e-27%2C 42.9%25 id in 203 aa;gbkey=CDS;gene=flgD;inference=similar to sequence:INSDC:U51896;product=putative basal-body rod modification protein;protein_id=CAL19398.1;transl_table=11
AL590842.1	EMBL	gene	783939	785180	.	+	.	ID=gene727;Name=flgE;gbkey=Gene;gene=flgE;gene_biotype=protein_coding;gene_synonym=lfgE;locus_tag=YPO0725
AL590842.1	EMBL	CDS	783939	785180	.	+	0	ID=cds708;Parent=gene727;Dbxref=GOA:Q7CGK8,InterPro:IPR001444,InterPro:IPR010930,InterPro:IPR011491,InterPro:IPR019776,InterPro:IPR020013,UniProtKB/TrEMBL:Q7CGK8,NCBI_GP:CAL19399.1;Name=CAL19399.1;Note=Similar to Escherichia coli flagellar hook protein FlgE SW:FLGE_ECOLI (P75937) (401 aa) fasta scores: E(): 1.9e-15%2C 38.8%25 id in 415 aa%2C and to Vibrio parahaemolyticus possible flagellar hook protein LfgE TR:Q56722 (EMBL:U51896) (362 aa) fasta scores: E(): 6.4e-33%2C 42.6%25 id in 380 aa;gbkey=CDS;gene=flgE;inference=similar to sequence:INSDC:U51896;product=putative flagellar hook protein;protein_id=CAL19399.1;transl_table=11
AL590842.1	EMBL	sequence_feature	783945	784037	.	+	.	ID=id1688;Note=Pfam match to entry PF00460 flg_bb_rod%2C Flagella basal body rod proteins%2C score 39.20%2C E-value 1.7e-08;gbkey=misc_feature;gene=flgE;inference=protein motif:PF00460
AL590842.1	EMBL	sequence_feature	783963	784025	.	+	.	ID=id1689;Note=PS00588 Flagella basal body rod proteins signature.;gbkey=misc_feature;gene=flgE;inference=protein motif:ProSite:PS00588
AL590842.1	EMBL	pseudogene	785180	785293	.	+	.	ID=gene728;Name=flgF;gbkey=Gene;gene=flgF;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO0727;part=1/2;pseudo=true
AL590842.1	EMBL	pseudogene	786008	786619	.	+	.	ID=gene728;Name=flgF;gbkey=Gene;gene=flgF;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO0727;part=2/2;pseudo=true
AL590842.1	EMBL	CDS	785180	785293	.	+	0	ID=cds709;Parent=gene728;Note=Similar to Escherichia coli flagellar basal-body rod protein FlgF SW:FLGF_ECOLI (P75938) (251 aa) fasta scores: E(): 4.6e-27%2C 37.8%25 id in 251 aa%2C and to Vibrio cholerae flagellar basal-body rod protein FlgF TR:Q9KQ11 (EMBL:AE004291) (249 aa) fasta scores: E(): 1.1e-29%2C 42.0%25 id in 250 aa. CDS disrupted by insertion of IS200-like element at codon 39.;gbkey=CDS;gene=flgF;inference=similar to sequence:INSDC:AE004291;product=putative flagellar basal-body rod protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	CDS	786008	786619	.	+	0	ID=cds709;Parent=gene728;Note=Similar to Escherichia coli flagellar basal-body rod protein FlgF SW:FLGF_ECOLI (P75938) (251 aa) fasta scores: E(): 4.6e-27%2C 37.8%25 id in 251 aa%2C and to Vibrio cholerae flagellar basal-body rod protein FlgF TR:Q9KQ11 (EMBL:AE004291) (249 aa) fasta scores: E(): 1.1e-29%2C 42.0%25 id in 250 aa. CDS disrupted by insertion of IS200-like element at codon 39.;gbkey=CDS;gene=flgF;inference=similar to sequence:INSDC:AE004291;product=putative flagellar basal-body rod protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	repeat_region	785296	786007	.	-	.	ID=id1690;Note=Contains a 'A' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	785404	785862	.	-	.	ID=gene729;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO0726
AL590842.1	EMBL	CDS	785404	785862	.	-	0	ID=cds710;Parent=gene729;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL19401.1;Name=CAL19401.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL19401.1;transl_table=11
AL590842.1	EMBL	sequence_feature	785497	785808	.	-	.	ID=id1691;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	786690	787475	.	+	.	ID=gene730;Name=flgG;gbkey=Gene;gene=flgG;gene_biotype=protein_coding;locus_tag=YPO0728
AL590842.1	EMBL	CDS	786690	787475	.	+	0	ID=cds711;Parent=gene730;Dbxref=GOA:Q7CGK9,InterPro:IPR001444,InterPro:IPR010930,InterPro:IPR012834,InterPro:IPR019776,InterPro:IPR020013,UniProtKB/TrEMBL:Q7CGK9,NCBI_GP:CAL19402.1;Name=CAL19402.1;Note=Similar to Escherichia coli flagellar basal-body rod protein FlgG SW:FLGG_ECOLI (P75939) (260 aa) fasta scores: E(): 0%2C 50.2%25 id in 259 aa%2C and to Pseudomonas aeruginosa flagellar basal-body rod protein FlgG TR:AAG04471 (EMBL:AE004539) (261 aa) fasta scores: E(): 0%2C 52.5%25 id in 261 aa;gbkey=CDS;gene=flgG;inference=similar to sequence:INSDC:AE004539;product=putative flagellar basal-body rod protein;protein_id=CAL19402.1;transl_table=11
AL590842.1	EMBL	sequence_feature	786702	786794	.	+	.	ID=id1692;Note=Pfam match to entry PF00460 flg_bb_rod%2C Flagella basal body rod proteins%2C score 47.00%2C E-value 1.4e-10;gbkey=misc_feature;gene=flgG;inference=protein motif:PF00460
AL590842.1	EMBL	sequence_feature	786720	786782	.	+	.	ID=id1693;Note=PS00588 Flagella basal body rod proteins signature.;gbkey=misc_feature;gene=flgG;inference=protein motif:ProSite:PS00588
AL590842.1	EMBL	gene	787510	788175	.	+	.	ID=gene731;Name=flgH;gbkey=Gene;gene=flgH;gene_biotype=protein_coding;locus_tag=YPO0729
AL590842.1	EMBL	CDS	787510	788175	.	+	0	ID=cds712;Parent=gene731;Dbxref=GOA:Q8ZHZ5,InterPro:IPR000527,NCBI_GP:CAL19403.1;Name=CAL19403.1;Note=Similar to Escherichia coli flagellar L-ring protein FlgH SW:FLGH_ECOLI (P75940) (232 aa) fasta scores: E(): 2.6e-19%2C 35.4%25 id in 223 aa%2C and to Vibrio cholerae flagellar L-ring protein FlgH TR:Q9KQ13 (EMBL:AE004291) (261 aa) fasta scores: E(): 7.2e-28%2C 46.1%25 id in 193 aa;gbkey=CDS;gene=flgH;inference=similar to sequence:INSDC:AE004291;product=putative flagellar L-ring protein;protein_id=CAL19403.1;transl_table=11
AL590842.1	EMBL	sequence_feature	787528	787560	.	+	.	ID=id1694;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=flgH;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	787681	788169	.	+	.	ID=id1695;Note=Pfam match to entry PF02107 FlgH%2C Flagellar L-ring protein%2C score 175.10%2C E-value 3.2e-54;gbkey=misc_feature;gene=flgH;inference=protein motif:PF02107
AL590842.1	EMBL	gene	788252	789364	.	+	.	ID=gene732;Name=flgI;gbkey=Gene;gene=flgI;gene_biotype=protein_coding;locus_tag=YPO0730
AL590842.1	EMBL	CDS	788252	789364	.	+	0	ID=cds713;Parent=gene732;Dbxref=GOA:Q8ZHZ4,InterPro:IPR001782,NCBI_GP:CAL19404.1;Name=CAL19404.1;Note=Similar to Escherichia coli flagellar P-ring protein precursor FlgI SW:FLGI_ECOLI (P75941) (365 aa) fasta scores: E(): 0%2C 45.7%25 id in 370 aa%2C and to Vibrio parahaemolyticus polar flagellar FlgI homologue TR:Q9X9J4 (EMBL:U12817) (363 aa) fasta scores: E(): 0%2C 48.5%25 id in 363 aa;gbkey=CDS;gene=flgI;inference=similar to sequence:INSDC:U12817;product=putative flagellar P-ring protein;protein_id=CAL19404.1;transl_table=11
AL590842.1	EMBL	sequence_feature	788333	789361	.	+	.	ID=id1696;Note=Pfam match to entry PF02119 FlgI%2C Flagellar P-ring protein%2C score 509.20%2C E-value 3.1e-149;gbkey=misc_feature;gene=flgI;inference=protein motif:PF02119
AL590842.1	EMBL	gene	789374	789667	.	+	.	ID=gene733;Name=flgJ;gbkey=Gene;gene=flgJ;gene_biotype=protein_coding;locus_tag=YPO0731
AL590842.1	EMBL	CDS	789374	789667	.	+	0	ID=cds714;Parent=gene733;Dbxref=InterPro:IPR019301,UniProtKB/TrEMBL:Q7CGL1,NCBI_GP:CAL19405.1;Name=CAL19405.1;Note=Similar to Buchnera aphidicola (subsp. Acyrthosiphon pisum) possible FlgJ TR:BAB13050 (EMBL:AP001119) (99 aa) fasta scores: E(): 0.044%2C 29.4%25 id in 68 aa%2C and to Rhodobacter sphaeroides flagellar muramidase protein FlgJ TR:AAG29752 (EMBL:AF205139) (100 aa) fasta scores: E(): 0.27%2C 32.6%25 id in 92 aa;gbkey=CDS;gene=flgJ;inference=similar to sequence:INSDC:AP001119;product=putative flagellar protein;protein_id=CAL19405.1;transl_table=11
AL590842.1	EMBL	gene	789780	791141	.	+	.	ID=gene734;Name=flgK;gbkey=Gene;gene=flgK;gene_biotype=protein_coding;locus_tag=YPO0732
AL590842.1	EMBL	CDS	789780	791141	.	+	0	ID=cds715;Parent=gene734;Dbxref=GOA:Q7CGL2,InterPro:IPR001444,InterPro:IPR002371,InterPro:IPR010930,UniProtKB/TrEMBL:Q7CGL2,NCBI_GP:CAL19406.1;Name=CAL19406.1;Note=Similar to Escherichia coli flagellar hook-associated protein 1 FlgK SW:FLGK_ECOLI (P33235) (546 aa) fasta scores: E(): 6.8e-24%2C 26.6%25 id in 477 aa%2C and to Salmonella typhimurium flagellar hook-associated protein 1 FlgK SW:FLGK_SALTY (P15932) (552 aa) fasta scores: E(): 1.4e-23%2C 25.9%25 id in 552 aa;gbkey=CDS;gene=flgK;product=putative flagellar hook-associated protein;protein_id=CAL19406.1;transl_table=11
AL590842.1	EMBL	gene	791170	792093	.	+	.	ID=gene735;Name=flgL;gbkey=Gene;gene=flgL;gene_biotype=protein_coding;locus_tag=YPO0733
AL590842.1	EMBL	CDS	791170	792093	.	+	0	ID=cds716;Parent=gene735;Dbxref=GOA:Q0WIU4,InterPro:IPR001029,InterPro:IPR013384,UniProtKB/TrEMBL:Q0WIU4,NCBI_GP:CAL19407.1;Name=CAL19407.1;Note=Similar to Escherichia coli flagellar hook-associated protein 3 FlgL SW:FLGL_ECOLI (P29744) (317 aa) fasta scores: E(): 3.3e-07%2C 23.4%25 id in 320 aa%2C and to Salmonella typhimurium flagellar hook-associated protein 3 Flgl SW:FLGL_SALTY (P16326) (317 aa) fasta scores: E(): 7.6e-07%2C 24.5%25 id in 319 aa;gbkey=CDS;gene=flgL;product=putative flagellar hook-associated protein;protein_id=CAL19407.1;transl_table=11
AL590842.1	EMBL	gene	792138	793118	.	+	.	ID=gene736;Name=YPO0734;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0734
AL590842.1	EMBL	CDS	792138	793118	.	+	0	ID=cds717;Parent=gene736;Dbxref=UniProtKB/TrEMBL:Q0WIU3,NCBI_GP:CAL19408.1;Name=CAL19408.1;Note=no significant database hits to the full length CDS. N-terminus of the CDS similar to internal regions of Aotus trivirgatus involucrin SW:INVO_AOTTR (P24708) (544 aa) fasta scores: E(): 0.42%2C 25.6%25 id in 172 aa%2C and to Mus musculus nuclear receptor coactivator 1 NCOA1 TR:Q61202 (EMBL:U56920) (1405 aa) fasta scores: E(): 2.6%2C 22.5%25 id in 275 aa;gbkey=CDS;inference=similar to sequence:INSDC:U56920;product=hypothetical protein;protein_id=CAL19408.1;transl_table=11
AL590842.1	EMBL	gene	793282	793605	.	-	.	ID=gene737;Name=YPO0735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0735
AL590842.1	EMBL	CDS	793282	793605	.	-	0	ID=cds718;Parent=gene737;Dbxref=UniProtKB/TrEMBL:Q0WIU2,NCBI_GP:CAL19409.1;Name=CAL19409.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19409.1;transl_table=11
AL590842.1	EMBL	gene	793709	794755	.	-	.	ID=gene738;Name=YPO0736;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0736
AL590842.1	EMBL	CDS	793709	794755	.	-	0	ID=cds719;Parent=gene738;Dbxref=GOA:Q7CGL3,InterPro:IPR001867,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:Q7CGL3,NCBI_GP:CAL19410.1;Name=CAL19410.1;Note=N-terminus similar to the N-terminus regions of Photobacterium profundum protein required for pressure-responsive gene expression ToxR TR:O66013 (EMBL:U77060) (290 aa) fasta scores: E(): 1.6e-06%2C 30.0%25 id in 150 aa%2C and to Vibrio fischeri transmembrane transcriptional activator ToxR TR:Q56689 (EMBL:L29053) (316 aa) fasta scores: E(): 2.1e-06%2C 28.5%25 id in 172 aa;gbkey=CDS;inference=similar to sequence:INSDC:U77060;product=putative regulatory protein;protein_id=CAL19410.1;transl_table=11
AL590842.1	EMBL	sequence_feature	794069	794134	.	-	.	ID=id1697;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	794438	794653	.	-	.	ID=id1698;Note=Pfam match to entry PF00486 trans_reg_C%2CTranscriptional regulatory protein%2C C terminal%2C score 39.80%2C E-value 1.6e-10;gbkey=misc_feature;inference=protein motif:PF00486
AL590842.1	EMBL	gene	795381	796595	.	+	.	ID=gene739;Name=flaA1;gbkey=Gene;gene=flaA1;gene_biotype=protein_coding;locus_tag=YPO0737
AL590842.1	EMBL	CDS	795381	796595	.	+	0	ID=cds720;Parent=gene739;Dbxref=GOA:Q0WIU0,InterPro:IPR001029,InterPro:IPR001492,UniProtKB/TrEMBL:Q0WIU0,NCBI_GP:CAL19411.1;Name=CAL19411.1;Note=Similar to Legionella pneumophila FlaA TR:Q48824 (EMBL:X83232) (475 aa) fasta scores: E(): 3.7e-15%2C 26.9%25 id in 476 aa%2C and to Clostridium chauvoei flagellin FliC TR:BAB13814 (EMBL:D89073) (413 aa) fasta scores: E(): 2.1e-14%2C 29.0%25 id in 417 aa. Similar to YPO0738 (79.8%25 identity in 406 aa overlap) and YPO0739 (78.4%25 identity in 408 aa overlap).;gbkey=CDS;gene=flaA1;inference=similar to sequence:INSDC:X83232;product=putative flagellin;protein_id=CAL19411.1;transl_table=11
AL590842.1	EMBL	sequence_feature	795465	795899	.	+	.	ID=id1699;Note=Pfam match to entry PF00669 Flagellin_N%2C Bacterial flagellin N-terminus%2C score 142.40%2C E-value 8.2e-39;gbkey=misc_feature;gene=flaA1;inference=protein motif:PF00669
AL590842.1	EMBL	sequence_feature	796308	796523	.	+	.	ID=id1700;Note=Pfam match to entry PF00700 Flagellin_C%2C Bacterial flagellin C-terminus%2C score 50.30%2C E-value 4.4e-11;gbkey=misc_feature;gene=flaA1;inference=protein motif:PF00700
AL590842.1	EMBL	gene	797110	798309	.	+	.	ID=gene740;Name=flaA2;gbkey=Gene;gene=flaA2;gene_biotype=protein_coding;locus_tag=YPO0738
AL590842.1	EMBL	CDS	797110	798309	.	+	0	ID=cds721;Parent=gene740;Dbxref=GOA:Q0WIT9,InterPro:IPR001029,InterPro:IPR001492,UniProtKB/TrEMBL:Q0WIT9,NCBI_GP:CAL19412.1;Name=CAL19412.1;Note=Similar to Pseudomonas aeruginosa flagellin FlaA SW:FLAA_PSEAE (P21184) (393 aa) fasta scores: E(): 1.3e-19%2C31.2%25 id in 401 aa%2C and to Bordetella bronchiseptica flagellin FlaA SW:FLAA_BORBR (Q06064) (390 aa) fasta scores: E(): 7.2e-19%2C 30.6%25 id in 402 aa. Similar to YPO0739 (90.5%25 identity in 401 aa overlap) and YPO0737 (79.8%25 identity in 406 aa overlap).;gbkey=CDS;gene=flaA2;product=putative flagellin;protein_id=CAL19412.1;transl_table=11
AL590842.1	EMBL	sequence_feature	797194	797628	.	+	.	ID=id1701;Note=Pfam match to entry PF00669 Flagellin_N%2C Bacterial flagellin N-terminus%2C score 142.40%2C E-value 8.2e-39;gbkey=misc_feature;gene=flaA2;inference=protein motif:PF00669
AL590842.1	EMBL	sequence_feature	798022	798237	.	+	.	ID=id1702;Note=Pfam match to entry PF00700 Flagellin_C%2C Bacterial flagellin C-terminus%2C score 50.30%2C E-value 4.4e-11;gbkey=misc_feature;gene=flaA2;inference=protein motif:PF00700
AL590842.1	EMBL	gene	798592	799797	.	+	.	ID=gene741;Name=flaA3;gbkey=Gene;gene=flaA3;gene_biotype=protein_coding;locus_tag=YPO0739
AL590842.1	EMBL	CDS	798592	799797	.	+	0	ID=cds722;Parent=gene741;Dbxref=GOA:Q0WIT8,InterPro:IPR001029,InterPro:IPR001492,UniProtKB/TrEMBL:Q0WIT8,NCBI_GP:CAL19413.1;Name=CAL19413.1;Note=Similar to Pseudomonas aeruginosa flagellin FlaA SW:FLAA_PSEAE (P21184) (393 aa) fasta scores: E(): 1.1e-20%2C30.5%25 id in 403 aa%2C and to Clostridium chauvoei flagellin FliC TR:BAB13814 (EMBL:D89073) (413 aa) fasta scores: E(): 2e-15%2C 30.9%25 id in 421 aa. Similar to YPO0738 (90.5%25 identity in 401 aa overlap) and YPO0737 (78.4%25 identity in 408 aa overlap).;gbkey=CDS;gene=flaA3;inference=similar to sequence:INSDC:D89073;product=putative flagellin;protein_id=CAL19413.1;transl_table=11
AL590842.1	EMBL	sequence_feature	798676	799110	.	+	.	ID=id1703;Note=Pfam match to entry PF00669 Flagellin_N%2C Bacterial flagellin N-terminus%2C score 142.40%2C E-value 8.2e-39;gbkey=misc_feature;gene=flaA3;inference=protein motif:PF00669
AL590842.1	EMBL	sequence_feature	799126	799149	.	+	.	ID=id1704;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=flaA3;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	799510	799725	.	+	.	ID=id1705;Note=Pfam match to entry PF00700 Flagellin_C%2C Bacterial flagellin C-terminus%2C score 50.30%2C E-value 4.4e-11;gbkey=misc_feature;gene=flaA3;inference=protein motif:PF00700
AL590842.1	EMBL	gene	800017	801294	.	+	.	ID=gene742;Name=fliD;gbkey=Gene;gene=fliD;gene_biotype=protein_coding;locus_tag=YPO0740
AL590842.1	EMBL	CDS	800017	801294	.	+	0	ID=cds723;Parent=gene742;Dbxref=GOA:Q74RI4,InterPro:IPR003481,InterPro:IPR010809,InterPro:IPR010810,UniProtKB/TrEMBL:Q74RI4,NCBI_GP:CAL19414.1;Name=CAL19414.1;Note=Similar to Salmonella typhimurium flagellar hook-associated protein 2 FliD SW:FLID_SALTY (P16328) (466 aa) fasta scores: E(): 2.4e-07%2C 25.3%25 id in 443 aa%2C and to Vibrio parahaemolyticus flagellar hook-associated protein 2 LafB SW:LAFB_VIBPA (Q03475) (445 aa) fasta scores: E(): 2.7e-07%2C 27.8%25 id in 450 aa;gbkey=CDS;gene=fliD;product=putative flagellar hook-associated protein;protein_id=CAL19414.1;transl_table=11
AL590842.1	EMBL	sequence_feature	800050	801255	.	+	.	ID=id1706;Note=Pfam match to entry PF02465 FliD%2C %2C score 44.30%2CE-value 1.8e-10;gbkey=misc_feature;gene=fliD;inference=protein motif:PF02465
AL590842.1	EMBL	gene	801304	801684	.	+	.	ID=gene743;Name=fliS;gbkey=Gene;gene=fliS;gene_biotype=protein_coding;gene_synonym=lafC;locus_tag=YPO0741
AL590842.1	EMBL	CDS	801304	801684	.	+	0	ID=cds724;Parent=gene743;Dbxref=GOA:Q74RI3,InterPro:IPR003713,UniProtKB/TrEMBL:Q74RI3,NCBI_GP:CAL19415.1;Name=CAL19415.1;Note=Similar to Vibrio parahaemolyticus flagellar protein LafC TR:P74950 (EMBL:U52957) (128 aa) fasta scores: E(): 9.5e-18%2C 44.3%25 id in 122 aa%2C and to Salmonella typhimurium flagellar protein FliS SW:FLIS_SALTY (P26609) (135 aa) fasta scores: E(): 1.5e-12%2C 36.1%25 id in 119 aa;gbkey=CDS;gene=fliS;inference=similar to sequence:INSDC:U52957;product=putative flagellar protein;protein_id=CAL19415.1;transl_table=11
AL590842.1	EMBL	gene	801686	802012	.	+	.	ID=gene744;Name=YPO0742;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0742
AL590842.1	EMBL	CDS	801686	802012	.	+	0	ID=cds725;Parent=gene744;Dbxref=UniProtKB/TrEMBL:Q74RI2,NCBI_GP:CAL19416.1;Name=CAL19416.1;Note=Weakly similar to N-terminus of Haemophilus influenzae phosphohistidine phosphatase SixA homologue HI1338 SW:SIXA_HAEIN (P44164) (164 aa) fasta scores: E(): 6.2%2C 26.5%25 id in 98 aa;gbkey=CDS;product=hypothetical protein;protein_id=CAL19416.1;transl_table=11
AL590842.1	EMBL	gene	802014	803195	.	+	.	ID=gene745;Name=YPO0743;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0743
AL590842.1	EMBL	CDS	802014	803195	.	+	0	ID=cds726;Parent=gene745;Dbxref=GOA:Q0WIT4,InterPro:IPR001451,InterPro:IPR011004,InterPro:IPR018357,InterPro:IPR021136,UniProtKB/TrEMBL:Q0WIT4,NCBI_GP:CAL19417.1;Name=CAL19417.1;Note=Similar to Escherichia coli flagellar hook-length control protein FliK SW:FLIK_ECOLI (P52614) (375 aa) fasta scores: E(): 0.0085%2C 22.6%25 id in 381 aa;gbkey=CDS;product=putative flagellar hook-length control protein;protein_id=CAL19417.1;transl_table=11
AL590842.1	EMBL	sequence_feature	802527	802613	.	+	.	ID=id1707;Note=PS00101 Hexapeptide-repeat containing-transferases signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00101
AL590842.1	EMBL	sequence_feature	802536	802589	.	+	.	ID=id1708;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 8.30%2C E-value 57;gbkey=misc_feature;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	802590	802643	.	+	.	ID=id1709;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 5.30%2C E-value 1.5e+02;gbkey=misc_feature;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	802617	802703	.	+	.	ID=id1710;Note=PS00101 Hexapeptide-repeat containing-transferases signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00101
AL590842.1	EMBL	sequence_feature	802662	802715	.	+	.	ID=id1711;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 6.60%2C E-value 97;gbkey=misc_feature;inference=protein motif:PF00132
AL590842.1	EMBL	gene	803234	803704	.	+	.	ID=gene746;Name=YPO0744;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0744
AL590842.1	EMBL	CDS	803234	803704	.	+	0	ID=cds727;Parent=gene746;Dbxref=GOA:Q0WIT3,InterPro:IPR005503,UniProtKB/TrEMBL:Q0WIT3,NCBI_GP:CAL19418.1;Name=CAL19418.1;Note=Similar to C-terminal regions of Vibrio parahaemolyticus possible flagellar biogenesis protein LafF TR:P74953 (EMBL:U52957) (166 aa) fasta scores: E(): 0.0008%2C25.7%25 id in 109 aa%2C and to Pseudomonas putida possible flagellar biogenesis protein FliL TR:Q9R9X9 (EMBL:AF031418) (165 aa) fasta scores: E(): 0.047%2C 20.5%25 id in 151 aa;gbkey=CDS;inference=similar to sequence:INSDC:U52957;product=putative flagellar biogenesis protein;protein_id=CAL19418.1;transl_table=11
AL590842.1	EMBL	sequence_feature	803267	803320	.	+	.	ID=id1712;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	803710	804405	.	+	.	ID=gene747;Name=fliA;gbkey=Gene;gene=fliA;gene_biotype=protein_coding;gene_synonym=lafS;locus_tag=YPO0745
AL590842.1	EMBL	CDS	803710	804405	.	+	0	ID=cds728;Parent=gene747;Dbxref=GOA:Q74RH9,InterPro:IPR000943,InterPro:IPR007624,InterPro:IPR007627,InterPro:IPR007630,InterPro:IPR011991,InterPro:IPR012845,InterPro:IPR013324,InterPro:IPR013325,InterPro:IPR014284,UniProtKB/TrEMBL:Q74RH9,NCBI_GP:CAL19419.1;Name=CAL19419.1;Note=Similar to Salmonella typhimurium RNA polymerase sigma factor for flagellar operon FliA SW:FLIA_SALTY (P17168) (239 aa) fasta scores: E(): 4e-20%2C 35.0%25 id in 217 aa%2C and to Vibrio parahaemolyticus RNA polymerase sigma factor for flagellar operon LafS SW:LAFS_VIBPA (Q03474) (242 aa) fasta scores: E(): 2.5e-25%2C 40.3%25 id in 216 aa;gbkey=CDS;gene=fliA;product=putative RNA polymerase sigma factor for flagellar operon;protein_id=CAL19419.1;transl_table=11
AL590842.1	EMBL	sequence_feature	803752	804396	.	+	.	ID=id1713;Note=Pfam match to entry PF00140 sigma70%2C Sigma-70 factor%2C score 156.30%2C E-value 5.4e-43;gbkey=misc_feature;gene=fliA;inference=protein motif:PF00140
AL590842.1	EMBL	sequence_feature	804307	804372	.	+	.	ID=id1714;Note=Predicted helix-turn-helix motif with score 1416 (+4.01 SD) at aa 200-221%2C sequence LSMKEIAQVLDLTEARICQLNK;gbkey=misc_feature;gene=fliA
AL590842.1	EMBL	gene	804421	805287	.	+	.	ID=gene748;Name=motA;gbkey=Gene;gene=motA;gene_biotype=protein_coding;locus_tag=YPO0746
AL590842.1	EMBL	CDS	804421	805287	.	+	0	ID=cds729;Parent=gene748;Dbxref=GOA:Q0WIT1,InterPro:IPR000540,InterPro:IPR002898,InterPro:IPR022522,UniProtKB/TrEMBL:Q0WIT1,NCBI_GP:CAL19420.1;Name=CAL19420.1;Note=Similar to Escherichia coli chemotaxis protein MotA SW:MOTA_ECOLI (P09348) (295 aa) fasta scores: E(): 0%2C 37.9%25 id in 277 aa%2C and to Vibrio parahaemolyticus chemotaxis protein LafT SW:LAFT_VIBPA (Q03477) (285 aa) fasta scores: E(): 0%2C 56.4%25 id in 280 aa;gbkey=CDS;gene=motA;inference=protein motif:TMHMM:2.0;product=putative flagellar motor transmembrane channel protein;protein_id=CAL19420.1;transl_table=11
AL590842.1	EMBL	sequence_feature	804520	804579	.	+	.	ID=id1715;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=motA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	804754	805149	.	+	.	ID=id1716;Note=Pfam match to entry PF01618 MotA_ExbB%2CMotA/TolQ/ExbB proton channel family%2C score -29.50%2C E-value 0.011;gbkey=misc_feature;gene=motA;inference=protein motif:PF01618
AL590842.1	EMBL	sequence_feature	804934	804993	.	+	.	ID=id1717;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=motA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	805003	805071	.	+	.	ID=id1718;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=motA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	805033	805086	.	+	.	ID=id1719;Note=PS01307 Flagellar motor protein motA family signature.;gbkey=misc_feature;gene=motA;inference=protein motif:ProSite:PS01307
AL590842.1	EMBL	gene	805287	806198	.	+	.	ID=gene749;Name=lafU;gbkey=Gene;gene=lafU;gene_biotype=protein_coding;gene_synonym=motB;locus_tag=YPO0747
AL590842.1	EMBL	CDS	805287	806198	.	+	0	ID=cds730;Parent=gene749;Dbxref=InterPro:IPR006665,InterPro:IPR025713,UniProtKB/TrEMBL:Q74RH7,NCBI_GP:CAL19421.1;Name=CAL19421.1;Note=Similar to Escherichia coli chemotaxis protein MotB protein SW:MOTB_ECOLI (P09349) (308 aa) fasta scores: E(): 1.1e-23%2C 32.6%25 id in 310 aa%2C and to Vibrio parahaemolyticus chemotaxis protein LafU SW:LAFU_VIBPA (Q03478) (330 aa) fasta scores: E(): 0%2C 40.1%25 id in 297 aa;gbkey=CDS;gene=lafU;product=putative chemotaxis membrane protein;protein_id=CAL19421.1;transl_table=11
AL590842.1	EMBL	sequence_feature	805365	805433	.	+	.	ID=id1720;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=lafU;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	805794	806087	.	+	.	ID=id1721;Note=Pfam match to entry PF00691 OmpA%2C OmpA family%2C score 51.60%2C E-value 1.8e-11;gbkey=misc_feature;gene=lafU;inference=protein motif:PF00691
AL590842.1	EMBL	gene	806267	806455	.	+	.	ID=gene750;Name=YPO0748;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0748
AL590842.1	EMBL	CDS	806267	806455	.	+	0	ID=cds731;Parent=gene750;Dbxref=UniProtKB/TrEMBL:Q74RH6,NCBI_GP:CAL19422.1;Name=CAL19422.1;Note=Poor database hits to the full length CDS. Weakly similar to internal fragment of Bacillus thuringiensis transposase TR:Q45711 (EMBL:L29100) (262 aa) fasta scores: E(): 7.9%2C 34.0%25 id in 47 aa;gbkey=CDS;inference=similar to sequence:INSDC:L29100;product=hypothetical protein;protein_id=CAL19422.1;transl_table=11
AL590842.1	EMBL	gene	806658	807254	.	+	.	ID=gene751;Name=YPO0749;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0749
AL590842.1	EMBL	CDS	806658	807254	.	+	0	ID=cds732;Parent=gene751;Dbxref=UniProtKB/TrEMBL:Q74RH5,NCBI_GP:CAL19423.1;Name=CAL19423.1;Note=no significant database hits to the full length CDS. Similar to C-terminus of Salmonella typhimurium LT2 protein STMF1.40 TR:Q9L9J5 (EMBL:AF170176) (114 aa) fasta scores: E(): 0.0016%2C 26.2%25 id in 103 aa%2C and to N-terminus of Bacillus halodurans BH2153 protein bh2153 TR:Q9KAY3 (EMBL:AP001514) (150 aa) fasta scores: E(): 4.4%2C 25.8%25 id in 128 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001514;product=hypothetical protein;protein_id=CAL19423.1;transl_table=11
AL590842.1	EMBL	gene	807251	807706	.	+	.	ID=gene752;Name=YPO0750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0750
AL590842.1	EMBL	CDS	807251	807706	.	+	0	ID=cds733;Parent=gene752;Dbxref=UniProtKB/TrEMBL:Q74RH4,NCBI_GP:CAL19424.1;Name=CAL19424.1;Note=Poor database matches%2C similarity to the internal regions of Drosophila melanogaster mitochondrial cytochrome B SW:CYB_DROME (P18935) (378 aa) fasta scores: E(): 1.1%2C23.6%25 id in 144 aa%2C and to Chrysodidymus synuroideus mitochondrial apocytochrome B TR:Q9MGB4 (EMBL:AF222718) (389 aa) fasta scores: E(): 1.6%2C 23.7%25 id in 131 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF222718;product=putative membrane protein;protein_id=CAL19424.1;transl_table=11
AL590842.1	EMBL	sequence_feature	807287	807355	.	+	.	ID=id1722;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	807398	807457	.	+	.	ID=id1723;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	807491	807559	.	+	.	ID=id1724;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	807617	807673	.	+	.	ID=id1725;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	807780	808061	.	+	.	ID=gene753;Name=YPO0751;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0751
AL590842.1	EMBL	CDS	807780	808061	.	+	0	ID=cds734;Parent=gene753;Dbxref=GOA:Q0WIS6,InterPro:IPR008523,UniProtKB/TrEMBL:Q0WIS6,NCBI_GP:CAL19425.1;Name=CAL19425.1;Note=Similar to internal regions of Pseudomonas aeruginosa hypothetical protein PA0659 TR:AAG04048 (EMBL:AE004500) (358 aa) fasta scores: E(): 0.26%2C 28.7%25 id in 87 aa%2C and to Bacillus subtilis hypothetical protein YrbD TR:O32060 (EMBL:Z99118) (484 aa) fasta scores: E(): 5.7%2C 29.3%25 id in 99 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z99118;product=putative membrane protein;protein_id=CAL19425.1;transl_table=11
AL590842.1	EMBL	sequence_feature	807783	807839	.	+	.	ID=id1726;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	807882	807935	.	+	.	ID=id1727;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	807954	808013	.	+	.	ID=id1728;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	pseudogene	808224	808689	.	-	.	ID=gene754;Name=pcp;gbkey=Gene;gene=pcp;gene_biotype=pseudogene;gene_synonym=pcpY,slyB;locus_tag=YPO0752;pseudo=true
AL590842.1	EMBL	CDS	808224	808689	.	-	0	ID=cds735;Parent=gene754;Note=Similar to Yersinia enterocolitica outer membrane lipoprotein PcpY SW:PCP_YEREN (P31484) (155 aa) fasta scores: E(): 0%2C 72.3%25 id in 155 aa%2C and to Escherichia coli outer membrane lipoprotein SlyB SW:SLYB_ECOLI (P55741) (155 aa) fasta scores: E(): 3.1e-31%2C 61.9%25 id in 155 aa. Contains a frameshift after codon 54. Frame shift occurs at a poly G nonamer. The sequence has been checked and is believed to be correct. Similar to YPO2373 (68.0%25 identity in 119 aa overlap).;gbkey=CDS;gene=pcp;product=putative lipoprotein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	808636	808668	.	-	.	ID=id1729;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=pcp;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	808939	809241	.	-	.	ID=gene755;Name=YPO0754;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0754
AL590842.1	EMBL	CDS	808939	809241	.	-	0	ID=cds736;Parent=gene755;Dbxref=InterPro:IPR022553,UniProtKB/TrEMBL:Q0WIS5,NCBI_GP:CAL19427.1;Name=CAL19427.1;Note=Similar to Escherichia coli hypothetical protein YjeO SW:YJEO_ECOLI (P39284) (104 aa) fasta scores: E(): 9.2e-07%2C 27.8%25 id in 97 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL19427.1;transl_table=11
AL590842.1	EMBL	sequence_feature	808957	809010	.	-	.	ID=id1730;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	809038	809094	.	-	.	ID=id1731;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	809176	809226	.	-	.	ID=id1732;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	repeat_region	809409	809576	.	+	.	ID=id1733;Note=Multiple repeat region containing 12xCCTTTA and 16xCTTTTA repeats.;gbkey=repeat_region
AL590842.1	EMBL	sequence_feature	809776	811239	.	+	.	ID=id1734;Note=IS1397-like insertion element: IS1661;gbkey=misc_feature
AL590842.1	EMBL	INVERTED	809776	809809	.	+	.	ID=id1735;Note=Inverted repeat for IS1661 insertion element;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	809842	810357	.	+	.	ID=gene756;Name=YPO0755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0755
AL590842.1	EMBL	CDS	809842	810357	.	+	0	ID=cds737;Parent=gene756;Dbxref=GOA:Q74RD6,InterPro:IPR009057,InterPro:IPR010921,InterPro:IPR011991,UniProtKB/TrEMBL:Q74RD6,NCBI_GP:CAL19428.1;Name=CAL19428.1;Note=Similar to Escherichia coli insertion element IS1397 hypothetical 20.1 kDa protein SW:YI9A_ECOLI (Q47309) (173 aa) fasta scores: E(): 2.3e-20%2C 39.6%25 id in 169 aa.;gbkey=CDS;product=insertion element DNA-binding protein;protein_id=CAL19428.1;transl_table=11
AL590842.1	EMBL	sequence_feature	809899	809964	.	+	.	ID=id1736;Note=Predicted helix-turn-helix motif with score 1691 (+4.95 SD) at aa 20-41%2C sequence ATLRETARQFSVGKSPLTRWIR;gbkey=misc_feature
AL590842.1	EMBL	gene	810411	811196	.	+	.	ID=gene757;Name=YPO0756;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0756
AL590842.1	EMBL	CDS	810411	811196	.	+	0	ID=cds738;Parent=gene757;Dbxref=GOA:Q7CKI6,InterPro:IPR001584,InterPro:IPR012337,InterPro:IPR025948,UniProtKB/TrEMBL:Q7CKI6,NCBI_GP:CAL19429.1;Name=CAL19429.1;Note=Similar to Escherichia coli insertion sequence IS1397 transposase%2C OrfB TR:Q47310 (EMBL:X92970) (240 aa) fasta scores: E(): 0%2C 53.0%25 id in 234 aa;gbkey=CDS;inference=similar to sequence:INSDC:X92970;product=transposase for insertion sequence IS1661;protein_id=CAL19429.1;transl_table=11
AL590842.1	EMBL	sequence_feature	810699	811178	.	+	.	ID=id1737;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 141.50%2C E-value 9.6e-40;gbkey=misc_feature;inference=protein motif:PF00665
AL590842.1	EMBL	INVERTED	811206	811239	.	-	.	ID=id1738;Note=Inverted repeat for IS1661 insertion element;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	pseudogene	811240	812261	.	-	.	ID=gene758;Name=YPO0757;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO0757;pseudo=true
AL590842.1	EMBL	CDS	811240	812261	.	-	0	ID=cds739;Parent=gene758;Note=Similar to Mycobacterium tuberculosis hypothetical protein MTCY164.07 TR:O05775 (EMBL:Z95150) (379 aa) fasta scores: E(): 7.2e-26%2C 34.2%25 id in 336 aa. This CDS is disrupted by the insertion of IS1661 element. The insertion occurred near the C-terminus. It is not clear whether this insertion affects the function of the protein.;gbkey=CDS;inference=similar to sequence:INSDC:Z95150;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	811734	811763	.	-	.	ID=id1739;Note=PS00659 Glycosyl hydrolases family 5 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00659
AL590842.1	EMBL	gene	812567	813562	.	+	.	ID=gene759;Name=YPO0758;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0758
AL590842.1	EMBL	CDS	812567	813562	.	+	0	ID=cds740;Parent=gene759;Dbxref=GOA:Q0WIS2,InterPro:IPR000843,InterPro:IPR010982,InterPro:IPR028082,UniProtKB/TrEMBL:Q0WIS2,NCBI_GP:CAL19431.1;Name=CAL19431.1;Note=Similar to Escherichia coli transcriptional repressor CytR SW:CYTR_ECOLI (P06964) (341 aa) fasta scores: E(): 1.1e-25%2C 32.0%25 id in 331 aa%2C and to Haemophilus influenzae ribose operon repressor RbsR SW:RBSR_HAEIN (P44329) (331 aa) fasta scores: E(): 2.7e-27%2C32.5%25 id in 329 aa;gbkey=CDS;product=LacI-family regulatory protein;protein_id=CAL19431.1;transl_table=11
AL590842.1	EMBL	sequence_feature	812726	813454	.	+	.	ID=id1740;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 77.60%2C E-value 2.5e-19;gbkey=misc_feature;inference=protein motif:PF00532
AL590842.1	EMBL	gene	813844	815214	.	+	.	ID=gene760;Name=YPO0759;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0759
AL590842.1	EMBL	CDS	813844	815214	.	+	0	ID=cds741;Parent=gene760;Dbxref=GOA:Q0WIS1,InterPro:IPR001898,UniProtKB/TrEMBL:Q0WIS1,NCBI_GP:CAL19432.1;Name=CAL19432.1;Note=Similar to Haemophilus influenzae hypothetical protein HI0608 SW:Y608_HAEIN (Q57486) (461 aa) fasta scores: E(): 0%2C 58.1%25 id in 451 aa%2C and to Vibrio cholerae transporter%2C NadC VCA0025 TR:Q9KNE0 (EMBL:AE004346) (462 aa) fasta scores: E(): 0%2C 54.6%25 id in 454 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004346;product=Sodium:sulfate symporter-family protein;protein_id=CAL19432.1;transl_table=11
AL590842.1	EMBL	sequence_feature	813901	813957	.	+	.	ID=id1741;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	813976	814044	.	+	.	ID=id1742;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	814087	814155	.	+	.	ID=id1743;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	814192	814260	.	+	.	ID=id1744;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	814261	815208	.	+	.	ID=id1745;Note=Pfam match to entry PF00939 Na_sulph_symp%2CSodium:sulfate symporter transmembrane region%2C score 83.50%2CE-value 4.3e-23;gbkey=misc_feature;inference=protein motif:PF00939
AL590842.1	EMBL	sequence_feature	814270	814338	.	+	.	ID=id1746;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	814357	814425	.	+	.	ID=id1747;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	814483	814542	.	+	.	ID=id1748;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	814600	814659	.	+	.	ID=id1749;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	814702	814761	.	+	.	ID=id1750;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	814780	814833	.	+	.	ID=id1751;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	814876	814944	.	+	.	ID=id1752;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	814963	815031	.	+	.	ID=id1753;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	815041	815109	.	+	.	ID=id1754;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	815056	815106	.	+	.	ID=id1755;Note=PS01271 Sodium:sulfate symporter family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01271
AL590842.1	EMBL	sequence_feature	815146	815205	.	+	.	ID=id1756;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	815394	815807	.	-	.	ID=gene761;Name=YPO0760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0760
AL590842.1	EMBL	CDS	815394	815807	.	-	0	ID=cds742;Parent=gene761;Dbxref=UniProtKB/TrEMBL:Q7CGL6,NCBI_GP:CAL19433.1;Name=CAL19433.1;Note=Similar to Escherichia coli hypothetical protein YjaA SW:YJAA_ECOLI (P09162) (127 aa) fasta scores: E(): 9.2e-13%2C 41.7%25 id in 120 aa;gbkey=CDS;product=putative membrane protein;protein_id=CAL19433.1;transl_table=11
AL590842.1	EMBL	gene	816351	816593	.	-	.	ID=gene762;Name=YPO0761;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0761
AL590842.1	EMBL	CDS	816351	816593	.	-	0	ID=cds743;Parent=gene762;Dbxref=UniProtKB/TrEMBL:Q7CGL7,NCBI_GP:CAL19434.1;Name=CAL19434.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19434.1;transl_table=11
AL590842.1	EMBL	gene	816868	821184	.	-	.	ID=gene763;Name=YPO0762;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0762
AL590842.1	EMBL	CDS	816868	821184	.	-	0	ID=cds744;Parent=gene763;Dbxref=GOA:Q74QM5,InterPro:IPR001826,InterPro:IPR006530,InterPro:IPR022385,UniProtKB/TrEMBL:Q74QM5,NCBI_GP:CAL19435.1;Name=CAL19435.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA2684 TR:AAG06072 (EMBL:AE004696) (1317 aa) fasta scores: E(): 3.9e-30%2C 27.3%25 id in 1251 aa%2C and to Escherichia coli putative rhs protein RhsD SW:RHSD_ECOLI (P16919) (1426 aa) fasta scores: E(): 1e-24%2C 26.5%25 id in 1288 aa. The CDS has an extension at the N-terminal end in comparison to other orthologues%2C possible alternative translational starts;gbkey=CDS;inference=similar to sequence:INSDC:AE004696;product=conserved hypothetical protein;protein_id=CAL19435.1;transl_table=11
AL590842.1	EMBL	sequence_feature	818431	818457	.	-	.	ID=id1757;Note=PS00221 MIP family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00221
AL590842.1	EMBL	gene	821198	822517	.	-	.	ID=gene764;Name=YPO0763;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0763
AL590842.1	EMBL	CDS	821198	822517	.	-	0	ID=cds745;Parent=gene764;Dbxref=InterPro:IPR001440,InterPro:IPR011990,UniProtKB/TrEMBL:Q0WIR7,NCBI_GP:CAL19436.1;Name=CAL19436.1;Note=Poor database hits. C-terminal region of CDS is similar to N-terminal region of Deinococcus radiodurans possible carboxypeptidase DR2423 TR:Q9RRR3 (EMBL:AE002072) (503 aa) fasta scores: E(): 9.2%2C 21.9%25 id in 274 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE002072;product=hypothetical protein;protein_id=CAL19436.1;transl_table=11
AL590842.1	EMBL	gene	822543	824768	.	-	.	ID=gene765;Name=YPO0764;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0764
AL590842.1	EMBL	CDS	822543	824768	.	-	0	ID=cds746;Parent=gene765;Dbxref=InterPro:IPR006531,InterPro:IPR006533,InterPro:IPR010609,InterPro:IPR017847,UniProtKB/TrEMBL:Q7CGL8,NCBI_GP:CAL19437.1;Name=CAL19437.1;Note=Similar to Escherichia coli hypothetical protein VgrG TR:O52672 (EMBL:AF044503) (713 aa) fasta scores: E(): 0%2C 43.2%25 id in 713 aa%2C and to Vibrio cholerae hypothetical protein VC1416 TR:Q9KS45 (EMBL:AE004220) (1163 aa) fasta scores: E(): 0%2C 39.1%25 id in 701 aa. Similar to the C-terminal regions of YPO3606 (77.2%25 identity in 615 aa overlap) and YPO3613 (76.2%25 identity in 621 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AF044503;product=conserved hypothetical protein;protein_id=CAL19437.1;transl_table=11
AL590842.1	EMBL	pseudogene	825357	829117	.	-	.	ID=gene766;Name=YPO0765;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO0765;pseudo=true
AL590842.1	EMBL	CDS	825357	829117	.	-	0	ID=cds747;Parent=gene766;Note=Similar to Escherichia coli adhesin AIDA-I SW:AIDA_ECOLI (Q03155) (1286 aa) fasta scores: E(): 6.2e-14%2C 23.7%25 id in 1272 aa%2C and to Yersinia pestis protein YapD TR:CAC14223 (EMBL:AJ277627) (1457 aa) fasta scores: E(): 1.2e-12%2C 24.5%25 id in 1218 aa. Similar to YPO1672 (82.4%25 identity in 1206 aa overlap) and YPO0309 (81.1%25 identity in 1199 aa overlap). Contains a frameshift after codon 552. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=similar to sequence:INSDC:AJ277627;product=putative adhesin (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	830118	831461	.	-	.	ID=gene767;Name=gntP;gbkey=Gene;gene=gntP;gene_biotype=protein_coding;locus_tag=YPO0767
AL590842.1	EMBL	CDS	830118	831461	.	-	0	ID=cds748;Parent=gene767;Dbxref=GOA:Q7CGL9,InterPro:IPR003474,UniProtKB/TrEMBL:Q7CGL9,NCBI_GP:CAL19439.1;Name=CAL19439.1;Note=Similar to Escherichia coli high-affinity gluconate transporter GntP SW:GNTP_ECOLI (P39373) (447 aa) fasta scores: E(): 0%2C 82.7%25 id in 445 aa%2C and to Escherichia coli high-affinity gluconate transporter GntT SW:GNTT_ECOLI (P39835) (437 aa) fasta scores: E(): 0%2C 41.7%25 id in 439 aa;gbkey=CDS;gene=gntP;inference=protein motif:TMHMM:2.0;product=putative gluconate transporter;protein_id=CAL19439.1;transl_table=11
AL590842.1	EMBL	sequence_feature	830124	831452	.	-	.	ID=id1758;Note=Pfam match to entry PF02447 GntP_permease%2C %2C score 770.60%2C E-value 6.5e-228;gbkey=misc_feature;gene=gntP;inference=protein motif:PF02447
AL590842.1	EMBL	sequence_feature	830124	830189	.	-	.	ID=id1759;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=gntP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	830325	830390	.	-	.	ID=id1760;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=gntP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	830412	830477	.	-	.	ID=id1761;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=gntP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	830490	830555	.	-	.	ID=id1762;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=gntP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	830619	830684	.	-	.	ID=id1763;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=gntP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	830715	830780	.	-	.	ID=id1764;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=gntP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	830874	830939	.	-	.	ID=id1765;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=gntP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	830985	831050	.	-	.	ID=id1766;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=gntP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	831090	831155	.	-	.	ID=id1767;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=gntP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	831225	831290	.	-	.	ID=id1768;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=gntP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	831312	831377	.	-	.	ID=id1769;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=gntP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	831351	831398	.	-	.	ID=id1770;Note=PS00012 Phosphopantetheine attachment site.;gbkey=misc_feature;gene=gntP;inference=protein motif:ProSite:PS00012
AL590842.1	EMBL	sequence_feature	831393	831449	.	-	.	ID=id1771;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=gntP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	833001	833399	.	+	.	ID=gene768;Name=YPO0768;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0768
AL590842.1	EMBL	CDS	833001	833399	.	+	0	ID=cds749;Parent=gene768;Dbxref=UniProtKB/TrEMBL:Q7CGM0,NCBI_GP:CAL19440.1;Name=CAL19440.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19440.1;transl_table=11
AL590842.1	EMBL	gene	833835	834710	.	+	.	ID=gene769;Name=YPO0769;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0769
AL590842.1	EMBL	CDS	833835	834710	.	+	0	ID=cds750;Parent=gene769;Dbxref=UniProtKB/TrEMBL:Q7CGM1,NCBI_GP:CAL19441.1;Name=CAL19441.1;Note=Similar to Salmonella typhimurium hypothetical protein SinI TR:Q9XCJ0 (EMBL:AF140550) (319 aa) fasta scores: E(): 3.2e-05%2C 27.3%25 id in 326 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF140550;product=putative exported protein;protein_id=CAL19441.1;transl_table=11
AL590842.1	EMBL	sequence_feature	835030	856930	.	-	.	ID=id1772;Note=Yersinia pestis High Pathogenicity Island (HPI)-like region. HPI-2.;gbkey=misc_feature
AL590842.1	EMBL	gene	835033	836790	.	-	.	ID=gene770;Name=YPO0770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0770
AL590842.1	EMBL	CDS	835033	836790	.	-	0	ID=cds751;Parent=gene770;Dbxref=GOA:Q0WIR2,InterPro:IPR001140,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR011527,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WIR2,NCBI_GP:CAL19442.1;Name=CAL19442.1;Note=Similar to Yersinia enterocolitica%2Chigh-pathogenicity island%2C lipoprotein inner membrane ABC-transporter%2C Irp6 TR:Q9X9I5 (EMBL:AJ132668) (600 aa) fasta scores: E(): 0%2C 30.8%25 id in 582 aa%2C and to Yersinia pestis hypothetical protein YbtQ TR:Q9Z375 (EMBL:AL031866) (600 aa) fasta scores: E(): 0%2C 33.7%25 id in 594 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=ABC-transporter transmembrane protein;protein_id=CAL19442.1;transl_table=11
AL590842.1	EMBL	sequence_feature	835150	835716	.	-	.	ID=id1773;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 183.30%2C E-value 3.9e-51;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	835327	835371	.	-	.	ID=id1774;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	835672	835695	.	-	.	ID=id1775;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	835921	836742	.	-	.	ID=id1776;Note=Pfam match to entry PF00664 ABC_membrane%2C ABC transporter transmembrane region.%2C score 33.40%2C E-value 5e-06;gbkey=misc_feature;inference=protein motif:PF00664
AL590842.1	EMBL	sequence_feature	835990	836055	.	-	.	ID=id1777;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	836263	836319	.	-	.	ID=id1778;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	836332	836397	.	-	.	ID=id1779;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	836533	836598	.	-	.	ID=id1780;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	836659	836724	.	-	.	ID=id1781;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	836783	838555	.	-	.	ID=gene771;Name=YPO0771;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0771
AL590842.1	EMBL	CDS	836783	838555	.	-	0	ID=cds752;Parent=gene771;Dbxref=GOA:Q7CGM2,InterPro:IPR001140,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR011527,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CGM2,NCBI_GP:CAL19443.1;Name=CAL19443.1;Note=Similar to Yersinia enterocolitica%2Chigh-pathogenicity island%2C lipoprotein inner membrane ABC-transporter%2C Irp6 TR:Q9X9I5 (EMBL:AJ132668) (600 aa) fasta scores: E(): 0%2C 32.4%25 id in 574 aa%2C and to Yersinia pestis hypothetical protein protein YbtP TR:Q9R7V3 (EMBL:AL031866) (600 aa) fasta scores: E(): 0%2C 32.6%25 id in 574 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=ABC-transporter transmembrane protein;protein_id=CAL19443.1;transl_table=11
AL590842.1	EMBL	sequence_feature	836915	837463	.	-	.	ID=id1782;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 165.60%2C E-value 8.2e-46;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	837092	837136	.	-	.	ID=id1783;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	837419	837442	.	-	.	ID=id1784;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	837662	837727	.	-	.	ID=id1785;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	837671	838492	.	-	.	ID=id1786;Note=Pfam match to entry PF00664 ABC_membrane%2C ABC transporter transmembrane region.%2C score 44.40%2C E-value 2.5e-09;gbkey=misc_feature;inference=protein motif:PF00664
AL590842.1	EMBL	sequence_feature	837743	837808	.	-	.	ID=id1787;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	837998	838063	.	-	.	ID=id1788;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	838076	838126	.	-	.	ID=id1789;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	838301	838366	.	-	.	ID=id1790;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	838427	838492	.	-	.	ID=id1791;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	838555	839859	.	-	.	ID=gene772;Name=YPO0772;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0772
AL590842.1	EMBL	CDS	838555	839859	.	-	0	ID=cds753;Parent=gene772;Dbxref=GOA:Q0WIR0,InterPro:IPR011701,InterPro:IPR016196,UniProtKB/TrEMBL:Q0WIR0,NCBI_GP:CAL19444.1;Name=CAL19444.1;Note=Similar to Yersinia enterocolitica%2Chigh-pathogenicity island%2C signal transducer protein Irp8 TR:Q9X9I7 (EMBL:AJ132668) (462 aa) fasta scores: E(): 3.9e-22%2C 27.9%25 id in 416 aa%2C and to Yersinia pestis protein hypothetical protein YbtX TR:Q9ZC28 (EMBL:AL031866) (462 aa) fasta scores: E(): 8e-22%2C 27.1%25 id in 421 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=putative membrane protein;protein_id=CAL19444.1;transl_table=11
AL590842.1	EMBL	sequence_feature	838624	838689	.	-	.	ID=id1792;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	838819	838884	.	-	.	ID=id1793;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	838906	838971	.	-	.	ID=id1794;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	839002	839067	.	-	.	ID=id1795;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	839107	839172	.	-	.	ID=id1796;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	839242	839307	.	-	.	ID=id1797;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	839329	839394	.	-	.	ID=id1798;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	839440	839505	.	-	.	ID=id1799;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	839527	839592	.	-	.	ID=id1800;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	839638	839700	.	-	.	ID=id1801;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	839716	839766	.	-	.	ID=id1802;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	839782	839838	.	-	.	ID=id1803;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	839849	840613	.	-	.	ID=gene773;Name=YPO0773;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0773
AL590842.1	EMBL	CDS	839849	840613	.	-	0	ID=cds754;Parent=gene773;Dbxref=GOA:Q0WIQ9,InterPro:IPR001031,InterPro:IPR012223,InterPro:IPR029058,UniProtKB/TrEMBL:Q0WIQ9,NCBI_GP:CAL19445.1;Name=CAL19445.1;Note=Similar to Pseudomonas aeruginosa probable pyochelin biosynthetic protein PchC TR:AAG07617 (EMBL:AE004840) (251 aa) fasta scores: E(): 1.1e-30%2C 38.6%25 id in 236 aa%2C and to C-terminus of Streptomyces griseus probable cadicidin biosynthesis thioesterase SW:PABT_STRGR (P33586) (361 aa) fasta scores: E(): 6e-25%2C 36.4%25 id in 225 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004840;product=putative thioesterase;protein_id=CAL19445.1;transl_table=11
AL590842.1	EMBL	sequence_feature	839900	840571	.	-	.	ID=id1804;Note=Pfam match to entry PF00975 Thioesterase%2CThioesterase domain%2C score 146.10%2C E-value 6.1e-40;gbkey=misc_feature;inference=protein motif:PF00975
AL590842.1	EMBL	gene	840606	841733	.	-	.	ID=gene774;Name=YPO0774;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0774
AL590842.1	EMBL	CDS	840606	841733	.	-	0	ID=cds755;Parent=gene774;Dbxref=GOA:Q7CGM3,InterPro:IPR000683,InterPro:IPR010091,InterPro:IPR016040,UniProtKB/TrEMBL:Q7CGM3,NCBI_GP:CAL19446.1;Name=CAL19446.1;Note=Similar to Yersinia enterocolitica high-pathogenicity island protein Irp3 TR:O54512 (EMBL:Y12527) (365 aa) fasta scores: E(): 3.6e-30%2C 33.7%25 id in 362 aa%2C and to Yersinia pestis YbtU protein ybtU TR:Q9Z3C6 (EMBL:AL031866) (365 aa) fasta scores: E(): 3.6e-30%2C 33.8%25 id in 364 aa;gbkey=CDS;inference=similar to sequence:INSDC:Y12527;product=conserved hypothetical protein;protein_id=CAL19446.1;transl_table=11
AL590842.1	EMBL	gene	841730	842806	.	-	.	ID=gene775;Name=YPO0775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0775
AL590842.1	EMBL	CDS	841730	842806	.	-	0	ID=cds756;Parent=gene775;Dbxref=GOA:Q0WIQ7,InterPro:IPR005097,InterPro:IPR016040,UniProtKB/TrEMBL:Q0WIQ7,NCBI_GP:CAL19447.1;Name=CAL19447.1;Note=Similar to Corynebacterium diphtheriae DtxR/iron-regulated protein 2 Irp2 TR:Q46024 (EMBL:U02634) (369 aa) fasta scores: E(): 2.2e-06%2C 23.3%25 id in 339 aa. N-terminal region similar to N-terminus of Pseudomonas aeruginosa hypothetical protein PA4362 TR:AAG07750 (EMBL:AE004852) (352 aa) fasta scores: E(): 0.054%2C 27.8%25 id in 209 aa;gbkey=CDS;inference=similar to sequence:INSDC:U02634;product=conserved hypothetical protein;protein_id=CAL19447.1;transl_table=11
AL590842.1	EMBL	gene	842803	848622	.	-	.	ID=gene776;Name=YPO0776;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0776
AL590842.1	EMBL	CDS	842803	848622	.	-	0	ID=cds757;Parent=gene776;Dbxref=GOA:Q0WIQ6,InterPro:IPR000873,InterPro:IPR001031,InterPro:IPR001242,InterPro:IPR006162,InterPro:IPR009081,InterPro:IPR010071,InterPro:IPR013217,InterPro:IPR013624,InterPro:IPR020845,InterPro:IPR025110,InterPro:IPR029058,InterPro:IPR029063,UniProtKB/TrEMBL:Q0WIQ6,NCBI_GP:CAL19448.1;Name=CAL19448.1;Note=Similar to N-terminus of Yersinia pestis yersiniabactin biogenesis protein Irp2 TR:Q9Z399 (EMBL:AL031866) (2041 aa) fasta scores: E(): 0%2C 31.1%25 id in 1659 aa%2C and to Pseudomonas aeruginosa pyochelin synthetase PchF TR:Q9RFM7 (EMBL:AF184622) (1809 aa) fasta scores: E(): 0%2C 34.1%25 id in 1957 aa. and to Vibrio anguillarum anguibactin biosynthesis protein AngR SW:ANGR_VIBAN (P19828) (1048 aa) fasta scores: E(): 0%2C 32.1%25 id in 844 aa. CDS contains a glutamine and threonine rich imperfect repeat region%2C residues 996 to 1065;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=putative siderophore biosysnthesis protein;protein_id=CAL19448.1;transl_table=11
AL590842.1	EMBL	sequence_feature	843862	843993	.	-	.	ID=id1805;Note=Pfam match to entry PF00550 pp-binding%2CPhosphopantetheine attachment site%2C score 20.40%2C E-value 0.00053;gbkey=misc_feature;inference=protein motif:PF00550
AL590842.1	EMBL	sequence_feature	843877	843924	.	-	.	ID=id1806;Note=PS00012 Phosphopantetheine attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00012
AL590842.1	EMBL	sequence_feature	845653	846834	.	-	.	ID=id1807;Note=Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%2C score 399.40%2C E-value 3.4e-116;gbkey=misc_feature;inference=protein motif:PF00501
AL590842.1	EMBL	sequence_feature	846463	846498	.	-	.	ID=id1808;Note=PS00455 Putative AMP-binding domain signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00455
AL590842.1	EMBL	sequence_feature	847489	848379	.	-	.	ID=id1809;Note=Pfam match to entry PF00668 DUF4%2C Domain of unknown function DUF4%2C score 103.90%2C E-value 6.1e-29;gbkey=misc_feature;inference=protein motif:PF00668
AL590842.1	EMBL	gene	848635	850287	.	-	.	ID=gene777;Name=YPO0777;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0777
AL590842.1	EMBL	CDS	848635	850287	.	-	0	ID=cds758;Parent=gene777;Dbxref=GOA:Q74QN9,InterPro:IPR000873,InterPro:IPR009081,InterPro:IPR010071,InterPro:IPR020845,InterPro:IPR025110,UniProtKB/TrEMBL:Q74QN9,NCBI_GP:CAL19449.1;Name=CAL19449.1;Note=Similar to the C-terminus of Vibrio anguillarum anguibactin biosynthesis protein AngR SW:ANGR_VIBAN (P19828) (1048 aa) fasta scores: E(): 0%2C 40.7%25 id in 553 aa. N-terminus of the CDS is similar to an internal region of Yersinia pestis yersiniabactin biogenesis protein Irp2 TR:Q9Z399 (EMBL:AL031866) (2041 aa) fasta scores: E(): 0%2C45.1%25 id in 439 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=putative siderophore biosysnthesis protein;protein_id=CAL19449.1;transl_table=11
AL590842.1	EMBL	sequence_feature	848689	848895	.	-	.	ID=id1810;Note=Pfam match to entry PF00550 pp-binding%2CPhosphopantetheine attachment site%2C score 42.00%2C E-value 5.3e-10;gbkey=misc_feature;inference=protein motif:PF00550
AL590842.1	EMBL	sequence_feature	849142	850284	.	-	.	ID=id1811;Note=Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%2C score 330.70%2C E-value 1.7e-95;gbkey=misc_feature;inference=protein motif:PF00501
AL590842.1	EMBL	sequence_feature	849970	850005	.	-	.	ID=id1812;Note=PS00455 Putative AMP-binding domain signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00455
AL590842.1	EMBL	gene	850331	856936	.	-	.	ID=gene778;Name=YPO0778;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0778
AL590842.1	EMBL	CDS	850331	856936	.	-	0	ID=cds759;Parent=gene778;Dbxref=GOA:Q0WIQ4,InterPro:IPR000873,InterPro:IPR001242,InterPro:IPR006162,InterPro:IPR009081,InterPro:IPR010071,InterPro:IPR013624,InterPro:IPR020845,InterPro:IPR025110,UniProtKB/TrEMBL:Q0WIQ4,NCBI_GP:CAL19450.1;Name=CAL19450.1;Note=Similar to Yersinia pestis yersiniabactin biogenesis protein Irp2 TR:Q9Z399 (EMBL:AL031866) (2041 aa) fasta scores: E(): 0%2C 36.8%25 id in 2031 aa%2C and to C-terminus of Stigmatella aurantiaca myxothiazol biosynthetic protein MtaD TR:Q9RFK8 (EMBL:AF188287) (3291 aa) fasta scores: E(): 0%2C 32.0%25 id in 1435 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=putative siderophore biosysnthesis protein;protein_id=CAL19450.1;transl_table=11
AL590842.1	EMBL	sequence_feature	850895	851680	.	-	.	ID=id1813;Note=Pfam match to entry PF00668 DUF4%2C Domain of unknown function DUF4%2C score 139.10%2C E-value 4.9e-39;gbkey=misc_feature;inference=protein motif:PF00668
AL590842.1	EMBL	sequence_feature	851900	852091	.	-	.	ID=id1814;Note=Pfam match to entry PF00550 pp-binding%2CPhosphopantetheine attachment site%2C score 33.10%2C E-value 1.6e-07;gbkey=misc_feature;inference=protein motif:PF00550
AL590842.1	EMBL	sequence_feature	851978	852025	.	-	.	ID=id1815;Note=PS00012 Phosphopantetheine attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00012
AL590842.1	EMBL	sequence_feature	853439	854665	.	-	.	ID=id1816;Note=Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%2C score 392.60%2C E-value 4e-114;gbkey=misc_feature;inference=protein motif:PF00501
AL590842.1	EMBL	sequence_feature	854249	854284	.	-	.	ID=id1817;Note=PS00455 Putative AMP-binding domain signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00455
AL590842.1	EMBL	sequence_feature	855212	855721	.	-	.	ID=id1818;Note=Pfam match to entry PF00668 DUF4%2C Domain of unknown function DUF4%2C score 43.40%2C E-value 1.5e-11;gbkey=misc_feature;inference=protein motif:PF00668
AL590842.1	EMBL	sequence_feature	855887	856102	.	-	.	ID=id1819;Note=Pfam match to entry PF00668 DUF4%2C Domain of unknown function DUF4%2C score 23.70%2C E-value 6.5e-06;gbkey=misc_feature;inference=protein motif:PF00668
AL590842.1	EMBL	sequence_feature	856190	856387	.	-	.	ID=id1820;Note=Pfam match to entry PF00550 pp-binding%2CPhosphopantetheine attachment site%2C score 32.80%2C E-value 2e-07;gbkey=misc_feature;inference=protein motif:PF00550
AL590842.1	EMBL	repeat_region	856931	858884	.	-	.	ID=id1821;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	856931	856958	.	+	.	ID=id1822;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	856997	857779	.	-	.	ID=gene779;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO0779
AL590842.1	EMBL	CDS	856997	857779	.	-	0	ID=cds760;Parent=gene779;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL19451.1;Name=CAL19451.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL19451.1;transl_table=11
AL590842.1	EMBL	sequence_feature	857072	857611	.	-	.	ID=id1823;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	857429	857452	.	-	.	ID=id1824;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	857776	858798	.	-	.	ID=gene780;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO0780
AL590842.1	EMBL	CDS	857776	858798	.	-	0	ID=cds761;Parent=gene780;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL19452.1;Name=CAL19452.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL19452.1;transl_table=11
AL590842.1	EMBL	sequence_feature	857920	858453	.	-	.	ID=id1825;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	sequence_feature	858682	858747	.	-	.	ID=id1826;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	858691	858774	.	-	.	ID=id1827;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	INVERTED	858857	858884	.	-	.	ID=id1828;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	pseudogene	858883	859233	.	-	.	ID=gene781;Name=YPO0781;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO0781;pseudo=true
AL590842.1	EMBL	CDS	858883	859233	.	-	0	ID=cds762;Parent=gene781;Note=Similar to N-terminal regions of Escherichia coli prepilin peptidase dependent protein A PpdA SW:PPDA_ECOLI (P33554) (156 aa) fasta scores: E(): 0.0018%2C 26.7%25 id in 101 aa%2C and Pseudomonas aeruginosa fimbrial protein precursor FimU TR:Q59652 (EMBL:L48934) (168 aa) fasta scores: E(): 0.27%2C 29.1%25 id in 86 aa. This CDS is disrupted by the insertion of IS100 element. The insertion occurred near the C-terminus. It is not clear whether this insertion affects the function of the protein.;gbkey=CDS;inference=similar to sequence:INSDC:L48934;product=putative surface structure protein (pseudo);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	859268	859486	.	-	.	ID=gene782;Name=YPO0782;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0782
AL590842.1	EMBL	CDS	859268	859486	.	-	0	ID=cds763;Parent=gene782;Dbxref=UniProtKB/TrEMBL:Q74RY8,NCBI_GP:CAL19454.1;Name=CAL19454.1;Note=Poor database matches. Doubtful CDS;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL19454.1;transl_table=11
AL590842.1	EMBL	sequence_feature	859313	859378	.	-	.	ID=id1829;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	859418	859474	.	-	.	ID=id1830;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	859517	860311	.	-	.	ID=gene783;Name=thyA;gbkey=Gene;gene=thyA;gene_biotype=protein_coding;locus_tag=YPO0783
AL590842.1	EMBL	CDS	859517	860311	.	-	0	ID=cds764;Parent=gene783;Dbxref=GOA:Q8ZHV1,InterPro:IPR000398,InterPro:IPR020940,InterPro:IPR023451,NCBI_GP:CAL19455.1;Name=CAL19455.1;Note=Similar to Escherichia coli thymidylate synthase ThyA SW:TYSY_ECOLI (P00470) (264 aa) fasta scores: E(): 0%2C88.6%25 id in 264 aa%2C and to Shigella flexneri thymidylate synthase ThyA SW:TYSY_SHIFL (P48464) (264 aa) fasta scores: E(): 0%2C 86.7%25 id in 264 aa. The Escherichia coli thymidylate synthase binds to its own mRNA%2C repressing translation thus leading to negative autoregulation.;gbkey=CDS;gene=thyA;product=thymidylate synthase;protein_id=CAL19455.1;transl_table=11
AL590842.1	EMBL	sequence_feature	859520	860311	.	-	.	ID=id1831;Note=Pfam match to entry PF00303 thymidylat_synt%2CThymidylate synthase%2C score 617.70%2C E-value 6.6e-182;gbkey=misc_feature;gene=thyA;inference=protein motif:PF00303
AL590842.1	EMBL	sequence_feature	859850	859936	.	-	.	ID=id1832;Note=PS00091 Thymidylate synthase active site.;gbkey=misc_feature;gene=thyA;inference=protein motif:ProSite:PS00091
AL590842.1	EMBL	gene	860318	861190	.	-	.	ID=gene784;Name=lgt;gbkey=Gene;gene=lgt;gene_biotype=protein_coding;gene_synonym=umpA;locus_tag=YPO0784
AL590842.1	EMBL	CDS	860318	861190	.	-	0	ID=cds765;Parent=gene784;Dbxref=GOA:Q8ZHV0,InterPro:IPR001640,NCBI_GP:CAL19456.1;Name=CAL19456.1;Note=Similar to Salmonella typhimurium lipoprotein biogenesis protein%2C prolipoprotein diacylglyceryl transferase Lgt SW:LGT_SALTY (Q07293) (291 aa) fasta scores: E(): 0%2C 80.1%25 id in 292 aa%2C and to Escherichia coli prolipoprotein diacylglyceryl transferase Lgt SW:LGT_ECOLI (P37149) (291 aa) fasta scores: E(): 0%2C 77.7%25 id in 292 aa;gbkey=CDS;gene=lgt;inference=protein motif:TMHMM:2.0;product=prolipoprotein diacylglyceryl transferase;protein_id=CAL19456.1;transl_table=11
AL590842.1	EMBL	sequence_feature	860339	861163	.	-	.	ID=id1833;Note=Pfam match to entry PF01790 LGT%2C Prolipoprotein diacylglyceryl transferase%2C score 463.00%2C E-value 2.4e-135;gbkey=misc_feature;gene=lgt;inference=protein motif:PF01790
AL590842.1	EMBL	sequence_feature	860351	860416	.	-	.	ID=id1834;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=lgt;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	860462	860512	.	-	.	ID=id1835;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=lgt;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	860534	860590	.	-	.	ID=id1836;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=lgt;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	860729	860767	.	-	.	ID=id1837;Note=PS01311 Prolipoprotein diacylglyceryl transferase signature.;gbkey=misc_feature;gene=lgt;inference=protein motif:ProSite:PS01311
AL590842.1	EMBL	sequence_feature	860753	860818	.	-	.	ID=id1838;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=lgt;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	860840	860905	.	-	.	ID=id1839;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=lgt;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	860951	861016	.	-	.	ID=id1840;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=lgt;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	861080	861145	.	-	.	ID=id1841;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=lgt;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	861441	863687	.	-	.	ID=gene785;Name=ptsP;gbkey=Gene;gene=ptsP;gene_biotype=protein_coding;locus_tag=YPO0785
AL590842.1	EMBL	CDS	861441	863687	.	-	0	ID=cds766;Parent=gene785;Dbxref=GOA:Q7CGZ5,InterPro:IPR000121,InterPro:IPR003018,InterPro:IPR006318,InterPro:IPR008279,InterPro:IPR008731,InterPro:IPR015813,InterPro:IPR018274,InterPro:IPR023151,InterPro:IPR029016,UniProtKB/TrEMBL:Q7CGZ5,NCBI_GP:CAL19457.1;Name=CAL19457.1;Note=Similar to Escherichia coli phosphoenolpyruvate-protein phosphotransferase PtsP SW:PT1P_ECOLI (P37177) (748 aa) fasta scores: E(): 0%2C 79.3%25 id in 747 aa%2C and to Vibrio cholerae phosphoenolpyruvate-protein phosphotransferase VC0672 TR:Q9KU52 (EMBL:AE004153) (748 aa) fasta scores: E(): 0%2C51.2%25 id in 752 aa. Escherichia coli protein also possesses a putative sensory transduction domain and is possible transcriptional regulator.;gbkey=CDS;gene=ptsP;inference=similar to sequence:INSDC:AE004153;product=phosphoenolpyruvate-protein phosphotransferase;protein_id=CAL19457.1;transl_table=11
AL590842.1	EMBL	sequence_feature	861678	862718	.	-	.	ID=id1842;Note=Pfam match to entry PF00391 PEP-utilizers%2CPEP-utilizing enzymes%2C score 532.80%2C E-value 2.4e-156;gbkey=misc_feature;gene=ptsP;inference=protein motif:PF00391
AL590842.1	EMBL	sequence_feature	861795	861851	.	-	.	ID=id1843;Note=PS00742 PEP-utilizing enzymes signature 2.;gbkey=misc_feature;gene=ptsP;inference=protein motif:ProSite:PS00742
AL590842.1	EMBL	sequence_feature	862602	862637	.	-	.	ID=id1844;Note=PS00370 PEP-utilizing enzymes phosphorylation site signature.;gbkey=misc_feature;gene=ptsP;inference=protein motif:ProSite:PS00370
AL590842.1	EMBL	sequence_feature	863163	863228	.	-	.	ID=id1845;Note=Predicted helix-turn-helix motif with score 987 (+2.55 SD) at aa 154-175%2C sequence LSQSQLNAIFGQYRQTRIRALA;gbkey=misc_feature;gene=ptsP
AL590842.1	EMBL	sequence_feature	863211	863639	.	-	.	ID=id1846;Note=Pfam match to entry PF01590 GAF%2C GAF domain%2C score 116.60%2C E-value 4.7e-31;gbkey=misc_feature;gene=ptsP;inference=protein motif:PF01590
AL590842.1	EMBL	gene	863700	864227	.	-	.	ID=gene786;Name=YPO0786;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0786
AL590842.1	EMBL	CDS	863700	864227	.	-	0	ID=cds767;Parent=gene786;Dbxref=GOA:Q8ZHU8,InterPro:IPR000086,InterPro:IPR015797,InterPro:IPR020084,InterPro:IPR020476,InterPro:IPR022927,NCBI_GP:CAL19458.1;Name=CAL19458.1;Note=Similar to Escherichia coli hypothetical protein YgdP SW:YGDP_ECOLI (Q46930) (176 aa) fasta scores: E(): 0%2C85.8%25 id in 176 aa%2C and to Vibrio cholerae probable nucleoside polyphosphate hydrolase VC0671 TR:Q9KU53 (EMBL:AE004153) (193 aa) fasta scores: E(): 0%2C 78.1%25 id in 160 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004153;product=conserved hypothetical protein;protein_id=CAL19458.1;transl_table=11
AL590842.1	EMBL	sequence_feature	863778	864209	.	-	.	ID=id1847;Note=Pfam match to entry PF00293 mutT%2C Bacterial mutT protein%2C score 111.10%2C E-value 2.2e-29;gbkey=misc_feature;inference=protein motif:PF00293
AL590842.1	EMBL	sequence_feature	864057	864116	.	-	.	ID=id1848;Note=PS00893 mutT domain signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00893
AL590842.1	EMBL	gene	864253	864504	.	-	.	ID=gene787;Name=YPO0787;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0787
AL590842.1	EMBL	CDS	864253	864504	.	-	0	ID=cds768;Parent=gene787;Dbxref=UniProtKB/TrEMBL:Q74RZ0,NCBI_GP:CAL19459.1;Name=CAL19459.1;Note=doubtful CDS with no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19459.1;transl_table=11
AL590842.1	EMBL	gene	864501	864692	.	-	.	ID=gene788;Name=YPO0788;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0788
AL590842.1	EMBL	CDS	864501	864692	.	-	0	ID=cds769;Parent=gene788;Dbxref=UniProtKB/TrEMBL:Q74RZ1,NCBI_GP:CAL19460.1;Name=CAL19460.1;Note=doubtful CDS with no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19460.1;transl_table=11
AL590842.1	EMBL	gene	864925	865611	.	+	.	ID=gene789;Name=mutH;gbkey=Gene;gene=mutH;gene_biotype=protein_coding;gene_synonym=mutR,prv;locus_tag=YPO0789
AL590842.1	EMBL	CDS	864925	865611	.	+	0	ID=cds770;Parent=gene789;Dbxref=GOA:Q8ZHU5,InterPro:IPR004230,InterPro:IPR011335,InterPro:IPR011337,NCBI_GP:CAL19461.1;Name=CAL19461.1;Note=Similar to Escherichia coli DNA mismatch repair protein MutH SW:MUTH_ECOLI (P06722) (228 aa) fasta scores: E(): 0%2C 72.7%25 id in 220 aa%2C and to Vibrio cholerae DNA mismatch repair protein VC0668 TR:Q9KU56 (EMBL:AE004153) (221 aa) fasta scores: E(): 0%2C 64.3%25 id in 221 aa;gbkey=CDS;gene=mutH;inference=similar to sequence:INSDC:AE004153;product=DNA mismatch repair protein;protein_id=CAL19461.1;transl_table=11
AL590842.1	EMBL	gene	865946	866986	.	+	.	ID=gene790;Name=tas;gbkey=Gene;gene=tas;gene_biotype=protein_coding;locus_tag=YPO0790
AL590842.1	EMBL	CDS	865946	866986	.	+	0	ID=cds771;Parent=gene790;Dbxref=InterPro:IPR001395,InterPro:IPR023210,UniProtKB/TrEMBL:Q7CGZ3,NCBI_GP:CAL19462.1;Name=CAL19462.1;Note=Similar to Escherichia coli putative aldo-keto reductase protein Tas SW:TAS_ECOLI (Q46933) (346 aa) fasta scores: E(): 0%2C 77.7%25 id in 346 aa%2C and to Vibrio cholerae oxidoreductase Tas%2C aldo/keto reductase family VC0667 TR:Q9KU57 (EMBL:AE004153) (352 aa) fasta scores: E(): 0%2C66.9%25 id in 347 aa;gbkey=CDS;gene=tas;inference=similar to sequence:INSDC:AE004153;product=putative aldo/keto reductase-family protein;protein_id=CAL19462.1;transl_table=11
AL590842.1	EMBL	sequence_feature	866258	866485	.	+	.	ID=id1849;Note=Pfam match to entry PF00248 aldo_ket_red%2C Aldo/keto reductase family%2C score 41.00%2C E-value 1.2e-10;gbkey=misc_feature;gene=tas;inference=protein motif:PF00248
AL590842.1	EMBL	gene	867363	867788	.	-	.	ID=gene791;Name=YPO0791;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0791
AL590842.1	EMBL	CDS	867363	867788	.	-	0	ID=cds772;Parent=gene791;Dbxref=UniProtKB/TrEMBL:Q0WIP2,NCBI_GP:CAL19463.1;Name=CAL19463.1;Note=no significant database hits. CDS DNA has a low G+C content%2C 40.61%25;gbkey=CDS;product=hypothetical protein;protein_id=CAL19463.1;transl_table=11
AL590842.1	EMBL	gene	867955	869175	.	-	.	ID=gene792;Name=ygeD;gbkey=Gene;gene=ygeD;gene_biotype=protein_coding;locus_tag=YPO0792
AL590842.1	EMBL	CDS	867955	869175	.	-	0	ID=cds773;Parent=gene792;Dbxref=GOA:Q7CGZ2,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR023727,NCBI_GP:CAL19464.1;Name=CAL19464.1;Note=Similar to Escherichia coli hypothetical protein YgeD SW:YGED_ECOLI (P39196) (397 aa) fasta scores: E(): 0%2C74.3%25 id in 397 aa%2C and to Chlamydia muridarum hypothetical protein TC0009 TR:Q9PLT6 (EMBL:AE002269) (559 aa) fasta scores: E(): 2.3e-13%2C 27.7%25 id in 404 aa;gbkey=CDS;gene=ygeD;inference=similar to sequence:INSDC:AE002269;product=putative membrane protein;protein_id=CAL19464.1;transl_table=11
AL590842.1	EMBL	sequence_feature	867997	868062	.	-	.	ID=id1850;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ygeD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	868078	868143	.	-	.	ID=id1851;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ygeD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	868183	868248	.	-	.	ID=id1852;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ygeD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	868261	868317	.	-	.	ID=id1853;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ygeD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	868339	868404	.	-	.	ID=id1854;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ygeD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	868450	868515	.	-	.	ID=id1855;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ygeD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	868624	868689	.	-	.	ID=id1856;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ygeD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	868828	868893	.	-	.	ID=id1857;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ygeD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	868957	869022	.	-	.	ID=id1858;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ygeD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	869053	869118	.	-	.	ID=id1859;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ygeD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	869172	871328	.	-	.	ID=gene793;Name=aas;gbkey=Gene;gene=aas;gene_biotype=protein_coding;locus_tag=YPO0793
AL590842.1	EMBL	CDS	869172	871328	.	-	0	ID=cds774;Parent=gene793;Dbxref=GOA:Q74RZ6,InterPro:IPR000873,InterPro:IPR002123,InterPro:IPR020845,InterPro:IPR023775,NCBI_GP:CAL19465.1;Name=CAL19465.1;Note=Similar to Escherichia coli bifunctional protein%2C2-Acylglycerophosphoethanolamine [2-acyl-GPE] acyltransferase and acyl-acyl carrier protein [acyl-ACP] synthase activities%2C Aas SW:AAS_ECOLI (P31119) (719 aa) fasta scores: E(): 0%2C 70.8%25 id in 715 aa%2C and to Rickettsia prowazekii 2-acylglycerophosphoethanolamine acyltransferase RP620 TR:Q9ZCU1 (EMBL:AJ235272) (1152 aa) fasta scores: E(): 0%2C 38.4%25 id in 724 aa;gbkey=CDS;gene=aas;inference=similar to sequence:INSDC:AJ235272;product=Aas bifunctional protein;protein_id=CAL19465.1;transl_table=11
AL590842.1	EMBL	sequence_feature	869391	870632	.	-	.	ID=id1860;Note=Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%2C score -58.50%2C E-value 3.8e-12;gbkey=misc_feature;gene=aas;inference=protein motif:PF00501
AL590842.1	EMBL	sequence_feature	869877	869906	.	-	.	ID=id1861;Note=PS00215 Mitochondrial energy transfer proteins signature.;gbkey=misc_feature;gene=aas;inference=protein motif:ProSite:PS00215
AL590842.1	EMBL	sequence_feature	870186	870221	.	-	.	ID=id1862;Note=PS00455 Putative AMP-binding domain signature.;gbkey=misc_feature;gene=aas;inference=protein motif:ProSite:PS00455
AL590842.1	EMBL	sequence_feature	870729	871265	.	-	.	ID=id1863;Note=Pfam match to entry PF01553 Acyltransferase%2CAcyltransferase%2C score 94.20%2C E-value 2.7e-24;gbkey=misc_feature;gene=aas;inference=protein motif:PF01553
AL590842.1	EMBL	gene	871777	874038	.	-	.	ID=gene794;Name=bisC;gbkey=Gene;gene=bisC;gene_biotype=protein_coding;locus_tag=YPO0794
AL590842.1	EMBL	CDS	871777	874038	.	-	0	ID=cds775;Parent=gene794;Dbxref=GOA:Q74RZ7,InterPro:IPR006656,InterPro:IPR006657,InterPro:IPR009010,UniProtKB/TrEMBL:Q74RZ7,NCBI_GP:CAL19466.1;Name=CAL19466.1;Note=Similar to Rhodobacter sphaeroides biotin sulfoxide reductase BisC SW:BISC_RHOSH (P54934) (744 aa) fasta scores: E(): 0%2C 49.0%25 id in 725 aa%2C and to Mycobacterium tuberculosis possible biotin sulfoxide reductase BisC TR:O06817 (EMBL:Z95844) (766 aa) fasta scores: E(): 0%2C42.7%25 id in 752 aa;gbkey=CDS;gene=bisC;inference=similar to sequence:INSDC:Z95844;product=putative biotin sulfoxide reductas2;protein_id=CAL19466.1;transl_table=11
AL590842.1	EMBL	sequence_feature	871801	872166	.	-	.	ID=id1864;Note=Pfam match to entry PF01568 Molydop_binding%2CMolydopterin dinucleotide binding domain%2C score 94.00%2CE-value 3e-24;gbkey=misc_feature;gene=bisC;inference=protein motif:PF01568
AL590842.1	EMBL	sequence_feature	872518	872709	.	-	.	ID=id1865;Note=Pfam match to entry PF00384 molybdopterin%2CProkaryotic molybdopterin oxidoreductases%2C score 79.50%2CE-value 6.7e-25;gbkey=misc_feature;gene=bisC;inference=protein motif:PF00384
AL590842.1	EMBL	sequence_feature	874345	874428	.	+	.	ID=id1866;Note=Pfam match to entry PF00356 lacI%2C Bacterial regulatory proteins%2C lacI family%2C score 60.80%2C E-value 6.9e-16;gbkey=misc_feature;inference=protein motif:PF00356
AL590842.1	EMBL	gene	874348	875370	.	+	.	ID=gene795;Name=galR;gbkey=Gene;gene=galR;gene_biotype=protein_coding;locus_tag=YPO0795
AL590842.1	EMBL	CDS	874348	875370	.	+	0	ID=cds776;Parent=gene795;Dbxref=GOA:Q0WIN8,InterPro:IPR000843,InterPro:IPR010982,InterPro:IPR028082,UniProtKB/TrEMBL:Q0WIN8,NCBI_GP:CAL19467.1;Name=CAL19467.1;Note=Similar to Escherichia coli galactose operon repressor GalR SW:GALR_ECOLI (P03024) (343 aa) fasta scores: E(): 0%2C 80.7%25 id in 332 aa%2C and to Vibrio cholerae LacI-family transcriptional regulator VC2337 TR:Q9KPM9 (EMBL:AE004303) (335 aa) fasta scores: E(): 0%2C 59.1%25 id in 330 aa;gbkey=CDS;gene=galR;inference=similar to sequence:INSDC:AE004303;product=galactose operon repressor;protein_id=CAL19467.1;transl_table=11
AL590842.1	EMBL	sequence_feature	874351	874416	.	+	.	ID=id1867;Note=Predicted helix-turn-helix motif with score 2181 (+6.62 SD) at aa 56-77%2C sequence ATIKDVAKLAGVSVATVSRVIN;gbkey=misc_feature;gene=galR
AL590842.1	EMBL	sequence_feature	874357	874413	.	+	.	ID=id1868;Note=PS00356 Bacterial regulatory proteins%2C lacI family signature.;gbkey=misc_feature;gene=galR;inference=protein motif:ProSite:PS00356
AL590842.1	EMBL	sequence_feature	874519	875244	.	+	.	ID=id1869;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 141.70%2C E-value 1.3e-38;gbkey=misc_feature;gene=galR;inference=protein motif:PF00532
AL590842.1	EMBL	gene	875367	876629	.	-	.	ID=gene796;Name=lysA;gbkey=Gene;gene=lysA;gene_biotype=protein_coding;locus_tag=YPO0796
AL590842.1	EMBL	CDS	875367	876629	.	-	0	ID=cds777;Parent=gene796;Dbxref=GOA:Q7CGZ1,InterPro:IPR000183,InterPro:IPR002986,InterPro:IPR009006,InterPro:IPR022643,InterPro:IPR022644,InterPro:IPR022653,InterPro:IPR022657,InterPro:IPR029066,UniProtKB/TrEMBL:Q7CGZ1,NCBI_GP:CAL19468.1;Name=CAL19468.1;Note=Similar to Escherichia coli diaminopimelate decarboxylase LysA SW:DCDA_ECOLI (P00861) (420 aa) fasta scores: E(): 0%2C 77.3%25 id in 418 aa%2C and to Streptomyces coelicolor diaminopimelate decarboxylase LysA SW:DCDA_STRCO (Q9ZBH5) (440 aa) fasta scores: E(): 0%2C 65.7%25 id in 405 aa;gbkey=CDS;gene=lysA;product=diaminopimelate decarboxylase;protein_id=CAL19468.1;transl_table=11
AL590842.1	EMBL	sequence_feature	875463	876548	.	-	.	ID=id1870;Note=Pfam match to entry PF00278 Orn_DAP_Arg_deC%2CPyridoxal-dependent decarboxylase%2C score 424.50%2C E-value 4.3e-126;gbkey=misc_feature;gene=lysA;inference=protein motif:PF00278
AL590842.1	EMBL	sequence_feature	875943	875984	.	-	.	ID=id1871;Note=PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2.;gbkey=misc_feature;gene=lysA;inference=protein motif:ProSite:PS00879
AL590842.1	EMBL	sequence_feature	876279	876311	.	-	.	ID=id1872;Note=PS00591 Glycosyl hydrolases family 10 active site.;gbkey=misc_feature;gene=lysA;inference=protein motif:ProSite:PS00591
AL590842.1	EMBL	sequence_feature	876423	876479	.	-	.	ID=id1873;Note=PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.;gbkey=misc_feature;gene=lysA;inference=protein motif:ProSite:PS00878
AL590842.1	EMBL	gene	876844	877785	.	+	.	ID=gene797;Name=lysR;gbkey=Gene;gene=lysR;gene_biotype=protein_coding;locus_tag=YPO0797
AL590842.1	EMBL	CDS	876844	877785	.	+	0	ID=cds778;Parent=gene797;Dbxref=GOA:Q0WIN6,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q0WIN6,NCBI_GP:CAL19469.1;Name=CAL19469.1;Note=Similar to Escherichia coli transcriptional activator protein LysR SW:LYSR_ECOLI (P03030) (311 aa) fasta scores: E(): 0%2C 67.9%25 id in 312 aa%2C and to Agrobacterium tumefaciens regulatory protein NocR SW:NOCR_AGRT5 (Q00678) (300 aa) fasta scores: E(): 4e-25%2C32.2%25 id in 289 aa;gbkey=CDS;gene=lysR;product=transcriptional activator protein LysR;protein_id=CAL19469.1;transl_table=11
AL590842.1	EMBL	sequence_feature	876859	877287	.	+	.	ID=id1874;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 123.20%2C E-value 4.8e-33;gbkey=misc_feature;gene=lysR;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	876898	876963	.	+	.	ID=id1875;Note=Predicted helix-turn-helix motif with score 1601 (+4.64 SD) at aa 19-40%2C sequence GNLTEAALLLQTSQPTVSRELA;gbkey=misc_feature;gene=lysR
AL590842.1	EMBL	sequence_feature	876901	876993	.	+	.	ID=id1876;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature.;gbkey=misc_feature;gene=lysR;inference=protein motif:ProSite:PS00044
AL590842.1	EMBL	gene	877782	878942	.	-	.	ID=gene798;Name=YPO0798;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0798
AL590842.1	EMBL	CDS	877782	878942	.	-	0	ID=cds779;Parent=gene798;Dbxref=GOA:Q7CGZ0,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q7CGZ0,NCBI_GP:CAL19470.1;Name=CAL19470.1;Note=Similar to Pseudomonas aeruginosa probable MFS transporter PA4355 TR:AAG07743 (EMBL:AE004851) (388 aa) fasta scores: E(): 0%2C 70.2%25 id in 376 aa%2C and to Streptomyces violaceus chloramphenicol resistance protein CmlV TR:Q56147 (EMBL:U09991) (436 aa) fasta scores: E(): 0%2C41.9%25 id in 377 aa;gbkey=CDS;inference=similar to sequence:INSDC:U09991;product=putative sugar transport protein;protein_id=CAL19470.1;transl_table=11
AL590842.1	EMBL	sequence_feature	877785	878942	.	-	.	ID=id1877;Note=Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporter%2C score -63.90%2C E-value 0.00014;gbkey=misc_feature;inference=protein motif:PF00083
AL590842.1	EMBL	sequence_feature	877818	877883	.	-	.	ID=id1878;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	877899	877955	.	-	.	ID=id1879;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	877992	878057	.	-	.	ID=id1880;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	878088	878153	.	-	.	ID=id1881;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	878175	878231	.	-	.	ID=id1882;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	878277	878342	.	-	.	ID=id1883;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	878406	878462	.	-	.	ID=id1884;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	878493	878558	.	-	.	ID=id1885;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	878580	878645	.	-	.	ID=id1886;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	878676	878732	.	-	.	ID=id1887;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	878754	878819	.	-	.	ID=id1888;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	878865	878927	.	-	.	ID=id1889;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	879311	880219	.	-	.	ID=gene799;Name=YPO0799;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0799
AL590842.1	EMBL	CDS	879311	880219	.	-	0	ID=cds780;Parent=gene799;Dbxref=GOA:Q7CGY9,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CGY9,NCBI_GP:CAL19471.1;Name=CAL19471.1;Note=Similar to Vibrio cholerae LysR-family transcriptional regulator VCA1055 TR:Q9KKP7 (EMBL:AE004431) (307 aa) fasta scores: E(): 0%2C 38.7%25 id in 297 aa%2C and to Synechocystis sp. transcriptional regulator SLR1245 TR:P73778 (EMBL:D90909) (302 aa) fasta scores: E(): 2.2e-32%2C 34.1%25 id in 302 aa;gbkey=CDS;inference=similar to sequence:INSDC:D90909;product=LysR-family transcriptional regulatory protein;protein_id=CAL19471.1;transl_table=11
AL590842.1	EMBL	sequence_feature	879791	880138	.	-	.	ID=id1890;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 88.90%2C E-value 1e-22;gbkey=misc_feature;inference=protein motif:PF00126
AL590842.1	EMBL	gene	880326	881213	.	+	.	ID=gene800;Name=YPO0800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0800
AL590842.1	EMBL	CDS	880326	881213	.	+	0	ID=cds781;Parent=gene800;Dbxref=InterPro:IPR001279,UniProtKB/TrEMBL:Q74S03,NCBI_GP:CAL19472.1;Name=CAL19472.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA0057 TR:AAG03447 (EMBL:AE004445) (295 aa) fasta scores: E(): 0%2C 57.9%25 id in 290 aa%2C and to Xylella fastidiosa hypothetical protein XF2283 TR:Q9PB61 (EMBL:AE004040) (317 aa) fasta scores: E(): 0%2C 53.8%25 id in 266 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004445;product=putative exported protein;protein_id=CAL19472.1;transl_table=11
AL590842.1	EMBL	sequence_feature	880437	881009	.	+	.	ID=id1891;Note=Pfam match to entry PF00753 lactamase_B%2CMetallo-beta-lactamase superfamily%2C score 12.30%2C E-value 0.00026;gbkey=misc_feature;inference=protein motif:PF00753
AL590842.1	EMBL	gene	881326	881961	.	+	.	ID=gene801;Name=YPO0801;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0801
AL590842.1	EMBL	CDS	881326	881961	.	+	0	ID=cds782;Parent=gene801;Dbxref=GOA:Q7CGY8,InterPro:IPR001853,InterPro:IPR012336,InterPro:IPR023169,UniProtKB/TrEMBL:Q7CGY8,NCBI_GP:CAL19473.1;Name=CAL19473.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA0058 TR:AAG03448 (EMBL:AE004445) (234 aa) fasta scores: E(): 0%2C 54.1%25 id in 205 aa%2C and to Vibrio cholerae hypothetical protein VCA0901 TR:Q9KL47 (EMBL:AE004418) (209 aa) fasta scores: E(): 2.9e-19%2C 33.3%25 id in 207 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004445;product=conserved hypothetical protein;protein_id=CAL19473.1;transl_table=11
AL590842.1	EMBL	gene	881947	883590	.	-	.	ID=gene802;Name=cheD;gbkey=Gene;gene=cheD;gene_biotype=protein_coding;gene_synonym=tse;locus_tag=YPO0802
AL590842.1	EMBL	CDS	881947	883590	.	-	0	ID=cds783;Parent=gene802;Dbxref=GOA:Q0WIN1,InterPro:IPR003122,InterPro:IPR003660,InterPro:IPR004089,InterPro:IPR004090,UniProtKB/TrEMBL:Q0WIN1,NCBI_GP:CAL19474.1;Name=CAL19474.1;Note=Similar to Escherichia coli methyl-accepting chemotaxis protein I CheD SW:MCP1_ECOLI (P02942) (551 aa) fasta scores: E(): 0%2C 40.2%25 id in 537 aa%2C and to Enterobacter aerogenes methyl-accepting chemotaxis serine transducer Tse SW:MCPS_ENTAE (P21822) (557 aa) fasta scores: E(): 0%2C 40.5%25 id in 523 aa;gbkey=CDS;gene=cheD;inference=protein motif:TMHMM:2.0;product=putative methyl-accepting chemotaxis protein;protein_id=CAL19474.1;transl_table=11
AL590842.1	EMBL	sequence_feature	882310	882492	.	-	.	ID=id1892;Note=Pfam match to entry PF00015 MCPsignal%2CMethyl-accepting chemotaxis protein (MCP) signaling domain%2Cscore 107.10%2C E-value 3.5e-29;gbkey=misc_feature;gene=cheD;inference=protein motif:PF00015
AL590842.1	EMBL	sequence_feature	882778	882996	.	-	.	ID=id1893;Note=Pfam match to entry PF00672 DUF5%2C HAMP domain%2C score 51.80%2C E-value 1.5e-11;gbkey=misc_feature;gene=cheD;inference=protein motif:PF00672
AL590842.1	EMBL	sequence_feature	882928	882993	.	-	.	ID=id1894;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=cheD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	883036	883443	.	-	.	ID=id1895;Note=Pfam match to entry PF02203 TarH%2C Tar ligand binding domain homologues%2C score 28.80%2C E-value 0.00012;gbkey=misc_feature;gene=cheD;inference=protein motif:PF02203
AL590842.1	EMBL	sequence_feature	883486	883551	.	-	.	ID=id1896;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=cheD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	883650	897327	.	-	.	ID=id1897;Note=Region of DNA with a low CG%25 content%2C 32.8%25. Possible horizontal gene transfer;gbkey=misc_feature
AL590842.1	EMBL	gene	883793	884194	.	-	.	ID=gene803;Name=YPO0803;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0803
AL590842.1	EMBL	CDS	883793	884194	.	-	0	ID=cds784;Parent=gene803;Dbxref=UniProtKB/TrEMBL:Q74S06,NCBI_GP:CAL19475.1;Name=CAL19475.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19475.1;transl_table=11
AL590842.1	EMBL	gene	884191	884907	.	-	.	ID=gene804;Name=YPO0804;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0804
AL590842.1	EMBL	CDS	884191	884907	.	-	0	ID=cds785;Parent=gene804;Dbxref=GOA:Q0WIM9,InterPro:IPR001867,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:Q0WIM9,NCBI_GP:CAL19476.1;Name=CAL19476.1;Note=Similar to Vibrio cholerae toxin corregulated pilus biosynthesis protein TcpP SW:TCPP_VIBCH (P29485) (221 aa) fasta scores: E(): 1.5e-05%2C 28.7%25 id in 181 aa%2C N-terminus is similar to the N-terminus of Vibrio fischeri transmembrane transcriptional activator ToxR TR:Q56689 (EMBL:L29053) (316 aa) fasta scores: E(): 8.5e-05%2C 36.6%25 id in 101 aa;gbkey=CDS;inference=similar to sequence:INSDC:L29053;product=putative regulatory membrane protein;protein_id=CAL19476.1;transl_table=11
AL590842.1	EMBL	sequence_feature	884197	884250	.	-	.	ID=id1898;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	884437	884502	.	-	.	ID=id1899;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	884632	884820	.	-	.	ID=id1900;Note=Pfam match to entry PF00486 trans_reg_C%2CTranscriptional regulatory protein%2C C terminal%2C score 36.40%2C E-value 1.6e-09;gbkey=misc_feature;inference=protein motif:PF00486
AL590842.1	EMBL	gene	885191	885496	.	+	.	ID=gene805;Name=YPO0805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0805
AL590842.1	EMBL	CDS	885191	885496	.	+	0	ID=cds786;Parent=gene805;Dbxref=InterPro:IPR019114,UniProtKB/TrEMBL:Q0WIM8,NCBI_GP:CAL19477.1;Name=CAL19477.1;Note=Similar to Klebsiella pneumoniae pullulanase secretion protein PulS SW:PULS_KLEPN (P20440) (125 aa) fasta scores: E(): 0.0042%2C 28.9%25 id in 97 aa%2C and to enterohemorrhagic Escherichia coli (EHEC) O157:H7 large virulence plasmid (pO157) protein EtpO TR:O32577 (EMBL:Y09824) (133 aa) fasta scores: E(): 0.0045%2C 32.9%25 id in 79 aa;gbkey=CDS;inference=similar to sequence:INSDC:Y09824;product=putative lipoprotein;protein_id=CAL19477.1;transl_table=11
AL590842.1	EMBL	sequence_feature	885215	885247	.	+	.	ID=id1901;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	885548	886390	.	-	.	ID=gene806;Name=YPO0806;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0806
AL590842.1	EMBL	CDS	885548	886390	.	-	0	ID=cds787;Parent=gene806;Dbxref=GOA:Q0WIM7,InterPro:IPR000045,InterPro:IPR010627,InterPro:IPR014032,UniProtKB/TrEMBL:Q0WIM7,NCBI_GP:CAL19478.1;Name=CAL19478.1;Note=Similar to Erwinia carotovora type 4 prepilin-like proteins leader peptide processing enzyme OutO SW:LEP4_ERWCA (P31712) (279 aa) fasta scores: E(): 0%2C 42.3%25 id in 265 aa%2C and to Aeromonas salmonicida type 4 prepilin-like proteins leader peptide processing enzyme TapD SW:LEP4_AERSA (O68964) (291 aa) fasta scores: E(): 0%2C42.2%25 id in 277 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=prepilin peptidase;protein_id=CAL19478.1;transl_table=11
AL590842.1	EMBL	sequence_feature	885563	885628	.	-	.	ID=id1902;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	885575	886357	.	-	.	ID=id1903;Note=Pfam match to entry PF01478 Peptidase_C20%2C Type III leader peptidase family%2C score 300.10%2C E-value 2.6e-86;gbkey=misc_feature;inference=protein motif:PF01478
AL590842.1	EMBL	sequence_feature	885668	885760	.	-	.	ID=id1904;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	885821	885886	.	-	.	ID=id1905;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	885908	885973	.	-	.	ID=id1906;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	886034	886099	.	-	.	ID=id1907;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	886313	886378	.	-	.	ID=id1908;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	886416	886877	.	-	.	ID=gene807;Name=YPO0807;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0807
AL590842.1	EMBL	CDS	886416	886877	.	-	0	ID=cds788;Parent=gene807;Dbxref=UniProtKB/TrEMBL:Q7CGY7,NCBI_GP:CAL19479.1;Name=CAL19479.1;Note=Poor database matches. Similar to Amsacta moorei entomopoxvirus protein AMV030 TR:AAG02736 (EMBL:AF250284) (144 aa) fasta scores: E(): 5.4%2C 22.9%25 id in 118 aa%2C and similar to the N-terminual region of Amsacta moorei entomopoxvirus protein AMV212 TR:AAG02918 (EMBL:AF250284) (284 aa) fasta scores: E(): 10%2C 29.1%25 id in 127 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF250284;product=putative membrane protein;protein_id=CAL19479.1;transl_table=11
AL590842.1	EMBL	sequence_feature	886761	886826	.	-	.	ID=id1909;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	886874	888043	.	-	.	ID=gene808;Name=YPO0808;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0808
AL590842.1	EMBL	CDS	886874	888043	.	-	0	ID=cds789;Parent=gene808;Dbxref=GOA:Q0WIM5,InterPro:IPR007812,InterPro:IPR024230,InterPro:IPR025691,UniProtKB/TrEMBL:Q0WIM5,NCBI_GP:CAL19480.1;Name=CAL19480.1;Note=Similar to Aeromonas hydrophila general secretion pathway protein L ExeL SW:GSPL_AERHY (P45789) (389 aa) fasta scores: E(): 1.8e-20%2C 23.3%25 id in 347 aa%2C and to Erwinia chrysanthemi general secretion pathway protein L OutL SW:GSPL_ERWCH (P31707) (399 aa) fasta scores: E(): 1.2e-16%2C 20.5%25 id in 396 aa;gbkey=CDS;product=general secretion pathway protein L;protein_id=CAL19480.1;transl_table=11
AL590842.1	EMBL	sequence_feature	887258	887323	.	-	.	ID=id1910;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	888048	889004	.	-	.	ID=gene809;Name=YPO0809;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0809
AL590842.1	EMBL	CDS	888048	889004	.	-	0	ID=cds790;Parent=gene809;Dbxref=GOA:Q7CGY6,InterPro:IPR005628,UniProtKB/TrEMBL:Q7CGY6,NCBI_GP:CAL19481.1;Name=CAL19481.1;Note=Similar to Erwinia carotovora general secretion pathway protein K OutK SW:GSPK_ERWCA (P31706) (328 aa) fasta scores: E(): 0.00012%2C 22.6%25 id in 327 aa%2C and to Klebsiella pneumoniae general secretion pathway protein K PulK SW:GSPK_KLEPN (P15750) (326 aa) fasta scores: E(): 0.0012%2C 25.4%25 id in 323 aa;gbkey=CDS;product=general secretion pathway protein K;protein_id=CAL19481.1;transl_table=11
AL590842.1	EMBL	sequence_feature	888918	888983	.	-	.	ID=id1911;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	889013	889609	.	-	.	ID=gene810;Name=YPO0810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0810
AL590842.1	EMBL	CDS	889013	889609	.	-	0	ID=cds791;Parent=gene810;Dbxref=GOA:Q0WIM3,InterPro:IPR010055,InterPro:IPR012902,UniProtKB/TrEMBL:Q0WIM3,NCBI_GP:CAL19482.1;Name=CAL19482.1;Note=Similar to Aeromonas hydrophila general secretion pathway protein J ExeJ SW:GSPJ_AERHY (P31739) (207 aa) fasta scores: E(): 1.1e-14%2C 30.3%25 id in 198 aa%2C and to enterohemorrhagic Escherichia coli (EHEC) O157:H7 large virulence plasmid (pO157) protein EtpJ TR:O32572 (EMBL:Y09824) (199 aa) fasta scores: E(): 2.1e-16%2C 31.9%25 id in 191 aa;gbkey=CDS;inference=similar to sequence:INSDC:Y09824;product=general secretion pathway protein J;protein_id=CAL19482.1;transl_table=11
AL590842.1	EMBL	sequence_feature	889514	889579	.	-	.	ID=id1912;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	889602	889946	.	-	.	ID=gene811;Name=YPO0811;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0811
AL590842.1	EMBL	CDS	889602	889946	.	-	0	ID=cds792;Parent=gene811;Dbxref=GOA:Q74S14,InterPro:IPR003413,InterPro:IPR010052,UniProtKB/TrEMBL:Q74S14,NCBI_GP:CAL19483.1;Name=CAL19483.1;Note=Similar to Aeromonas hydrophila general secretion pathway protein I ExeI SW:GSPI_AERHY (P31737) (119 aa) fasta scores: E(): 4.3e-15%2C 41.2%25 id in 102 aa%2C and to Erwinia chrysanthemi general secretion pathway protein I precursor OutI SW:GSPI_ERWCH (P24688) (125 aa) fasta scores: E(): 8.1e-13%2C 34.9%25 id in 109 aa;gbkey=CDS;product=general secretion pathway protein I;protein_id=CAL19483.1;transl_table=11
AL590842.1	EMBL	sequence_feature	889611	889946	.	-	.	ID=id1913;Note=Pfam match to entry PF02501 GSPII_IJ%2C %2C score 68.60%2CE-value 1.3e-16;gbkey=misc_feature;inference=protein motif:PF02501
AL590842.1	EMBL	sequence_feature	889869	889934	.	-	.	ID=id1914;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	889984	890526	.	-	.	ID=gene812;Name=YPO0812;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0812
AL590842.1	EMBL	CDS	889984	890526	.	-	0	ID=cds793;Parent=gene812;Dbxref=GOA:Q0WIM1,InterPro:IPR002416,InterPro:IPR012902,InterPro:IPR022346,UniProtKB/TrEMBL:Q0WIM1,NCBI_GP:CAL19484.1;Name=CAL19484.1;Note=Similar to Erwinia chrysanthemi general secretion pathway protein H OutH SW:GSPH_ERWCH (P24687) (181 aa) fasta scores: E(): 0.13%2C 20.2%25 id in 178 aa%2C and to enterohemorrhagic Escherichia coli (EHEC) O157:H7 large virulence plasmid (pO157) protein EtpH TR:O32570 (EMBL:Y09824) (184 aa) fasta scores: E(): 0.084%2C 20.8%25 id in 183 aa;gbkey=CDS;inference=similar to sequence:INSDC:Y09824;product=general secretion pathway protein H;protein_id=CAL19484.1;transl_table=11
AL590842.1	EMBL	sequence_feature	890275	890292	.	-	.	ID=id1915;Note=PS00190 Cytochrome c family heme-binding site signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00190
AL590842.1	EMBL	sequence_feature	890440	890505	.	-	.	ID=id1916;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	890531	890968	.	-	.	ID=gene813;Name=YPO0813;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0813
AL590842.1	EMBL	CDS	890531	890968	.	-	0	ID=cds794;Parent=gene813;Dbxref=GOA:Q7CGY5,InterPro:IPR000983,InterPro:IPR010054,InterPro:IPR012902,InterPro:IPR013545,UniProtKB/TrEMBL:Q7CGY5,NCBI_GP:CAL19485.1;Name=CAL19485.1;Note=Similar to Erwinia carotovora general secretion pathway protein G OutG SW:GSPG_ERWCA (P31586) (156 aa) fasta scores: E(): 0%2C 69.9%25 id in 133 aa%2C and to Erwinia chrysanthemi general secretion pathway protein G OutG SW:GSPG_ERWCH (P31585) (153 aa) fasta scores: E(): 0%2C 67.9%25 id in 134 aa;gbkey=CDS;product=general secretion pathway protein G;protein_id=CAL19485.1;transl_table=11
AL590842.1	EMBL	sequence_feature	890870	890926	.	-	.	ID=id1917;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	pseudogene	890991	892189	.	-	.	ID=gene814;Name=YPO0814;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO0814;pseudo=true
AL590842.1	EMBL	CDS	890991	892189	.	-	0	ID=cds795;Parent=gene814;Note=Similar to Erwinia carotovora general secretion pathway protein F OutF SW:GSPF_ERWCA (P31705) (408 aa) fasta scores: E(): 0%2C 42.4%25 id in 406 aa%2C and to Erwinia chrysanthemi general secretion pathway protein F OutF SW:GSPF_ERWCH (P31704) (404 aa) fasta scores: E(): 0%2C 40.9%25 id in 406 aa. Contains a frameshift after codon 59. Possible deletion in this region. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=general secretion pathway protein F (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	891006	891992	.	-	.	ID=id1918;Note=Pfam match to entry PF00482 GSPII_F%2C Bacterial type II secretion system protein F domain%2C score 406.00%2C E-value 3.5e-118;gbkey=misc_feature;inference=protein motif:PF00482
AL590842.1	EMBL	sequence_feature	891024	891089	.	-	.	ID=id1919;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	891162	891287	.	-	.	ID=id1920;Note=PS00041 Bacterial regulatory proteins%2C araC family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00041
AL590842.1	EMBL	sequence_feature	891477	891530	.	-	.	ID=id1921;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	891624	891710	.	-	.	ID=id1922;Note=PS00874 Bacterial type II secretion system protein F signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00874
AL590842.1	EMBL	sequence_feature	891627	891692	.	-	.	ID=id1923;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	892176	893687	.	-	.	ID=gene815;Name=YPO0815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0815
AL590842.1	EMBL	CDS	892176	893687	.	-	0	ID=cds796;Parent=gene815;Dbxref=GOA:Q7CGY4,InterPro:IPR001482,InterPro:IPR003593,InterPro:IPR013369,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CGY4,NCBI_GP:CAL19487.1;Name=CAL19487.1;Note=Similar to Erwinia carotovora general secretion pathway protein E OutE SW:GSPE_ERWCA (P31703) (498 aa) fasta scores: E(): 0%2C 56.0%25 id in 502 aa%2C and to enterohemorrhagic Escherichia coli (EHEC) O157:H7 large virulence plasmid (pO157) protein EtpE TR:O82884 (EMBL:AB011549) (501 aa) fasta scores: E(): 0%2C 56.6%25 id in 484 aa;gbkey=CDS;inference=similar to sequence:INSDC:AB011549;product=general secretion pathway protein E;protein_id=CAL19487.1;transl_table=11
AL590842.1	EMBL	sequence_feature	892509	893354	.	-	.	ID=id1924;Note=Pfam match to entry PF00437 GSPII_E%2C Bacterial type II secretion system protein%2C score 568.50%2C E-value 1.9e-168;gbkey=misc_feature;inference=protein motif:PF00437
AL590842.1	EMBL	sequence_feature	892698	892742	.	-	.	ID=id1925;Note=PS00662 Bacterial type II secretion system protein E signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00662
AL590842.1	EMBL	sequence_feature	892896	892919	.	-	.	ID=id1926;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	893684	895606	.	-	.	ID=gene816;Name=YPO0816;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0816
AL590842.1	EMBL	CDS	893684	895606	.	-	0	ID=cds797;Parent=gene816;Dbxref=GOA:Q0WIL8,InterPro:IPR001775,InterPro:IPR004845,InterPro:IPR004846,InterPro:IPR005644,InterPro:IPR013356,UniProtKB/TrEMBL:Q0WIL8,NCBI_GP:CAL19488.1;Name=CAL19488.1;Note=Similar to Klebsiella pneumoniae general secretion pathway protein D GspD SW:GSPD_KLEPN (P15644) (660 aa) fasta scores: E(): 0%2C 48.9%25 id in 640 aa%2C and to Aeromonas salmonicida general secretion pathway protein D ExeD SW:GSPD_AERSA (P45778) (678 aa) fasta scores: E(): 0%2C 47.1%25 id in 633 aa. The CDS contains an internal deletion relative to other orthologues around codon 380. The effect on function is unknown.;gbkey=CDS;product=general secretion pathway protein D;protein_id=CAL19488.1;transl_table=11
AL590842.1	EMBL	sequence_feature	893864	895498	.	-	.	ID=id1927;Note=Pfam match to entry PF00263 Bac_GSPproteins%2CBacterial type II secretion system protein%2C score 605.70%2CE-value 2.7e-178;gbkey=misc_feature;inference=protein motif:PF00263
AL590842.1	EMBL	sequence_feature	893930	894031	.	-	.	ID=id1928;Note=PS00875 Bacterial type II secretion system protein D signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00875
AL590842.1	EMBL	sequence_feature	894824	894871	.	-	.	ID=id1929;Note=PS00589 PTS HPR component serine phosphorylation site signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00589
AL590842.1	EMBL	sequence_feature	895502	895567	.	-	.	ID=id1930;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	895687	896190	.	-	.	ID=gene817;Name=YPO0817;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0817
AL590842.1	EMBL	CDS	895687	896190	.	-	0	ID=cds798;Parent=gene817;Dbxref=UniProtKB/TrEMBL:Q0WIL7,NCBI_GP:CAL19489.1;Name=CAL19489.1;Note=Similar to N-terminal regions of Aeromonas hydrophila general secretion pathway protein C ExeC SW:GSPC_AERHY (P45790) (290 aa) fasta scores: E(): 0.013%2C24.3%25 id in 144 aa%2C and to Aeromonas salmonicida general secretion pathway protein C ExeC SW:GSPC_AERSA (P45772) (290 aa) fasta scores: E(): 0.12%2C 23.6%25 id in 144 aa. CDS is truncated relative orthologues%2C effect on function unknown.;gbkey=CDS;product=general secretion pathway protein C;protein_id=CAL19489.1;transl_table=11
AL590842.1	EMBL	sequence_feature	896065	896130	.	-	.	ID=id1931;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	896258	896674	.	-	.	ID=gene818;Name=YPO0818;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0818
AL590842.1	EMBL	CDS	896258	896674	.	-	0	ID=cds799;Parent=gene818;Dbxref=GOA:Q7CGY3,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:Q7CGY3,NCBI_GP:CAL19490.1;Name=CAL19490.1;Note=Poor database hits. Weakly similar to internal region of Salmonella typhimurium putative transcriptional regulator MarT TR:Q9Z623 (EMBL:AF106566) (285 aa) fasta scores: E(): 4%2C 29.7%25 id in 74 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF106566;product=hypothetical protein;protein_id=CAL19490.1;transl_table=11
AL590842.1	EMBL	gene	897417	898172	.	-	.	ID=gene819;Name=YPO0819;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0819
AL590842.1	EMBL	CDS	897417	898172	.	-	0	ID=cds800;Parent=gene819;Dbxref=GOA:Q7CGY2,InterPro:IPR001765,InterPro:IPR006311,InterPro:IPR019546,UniProtKB/TrEMBL:Q7CGY2,NCBI_GP:CAL19491.1;Name=CAL19491.1;Note=Similar to Chlamydomonas reinhardtii beta-carbonic anhydrase CA1 TR:P93108 (EMBL:U80804) (267 aa) fasta scores: E(): 1.8e-17%2C 39.0%25 id in 223 aa%2C and to Salmonella typhimurium putative carbonic anhydrase Mig-5 TR:O30898 (EMBL:AF020806) (246 aa) fasta scores: E(): 0%2C 60.9%25 id in 243 aa;gbkey=CDS;inference=similar to sequence:INSDC:U80804;product=putative carbonic anhydrase;protein_id=CAL19491.1;transl_table=11
AL590842.1	EMBL	sequence_feature	897678	897902	.	-	.	ID=id1932;Note=Pfam match to entry PF00484 Pro_CA%2C Prokaryotic-type carbonic anhydrases%2C score 29.80%2C E-value 1.4e-07;gbkey=misc_feature;inference=protein motif:PF00484
AL590842.1	EMBL	sequence_feature	898044	898109	.	-	.	ID=id1933;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	898548	898856	.	+	.	ID=gene820;Name=YPO0820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0820
AL590842.1	EMBL	CDS	898548	898856	.	+	0	ID=cds801;Parent=gene820;Dbxref=UniProtKB/TrEMBL:Q7CGY1,NCBI_GP:CAL19492.1;Name=CAL19492.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19492.1;transl_table=11
AL590842.1	EMBL	gene	899243	899437	.	+	.	ID=gene821;Name=YPO0821;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0821
AL590842.1	EMBL	CDS	899243	899437	.	+	0	ID=cds802;Parent=gene821;Dbxref=UniProtKB/TrEMBL:Q74S24,NCBI_GP:CAL19493.1;Name=CAL19493.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19493.1;transl_table=11
AL590842.1	EMBL	gene	899459	900409	.	+	.	ID=gene822;Name=YPO0822;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0822
AL590842.1	EMBL	CDS	899459	900409	.	+	0	ID=cds803;Parent=gene822;Dbxref=UniProtKB/TrEMBL:Q7CGY0,NCBI_GP:CAL19494.1;Name=CAL19494.1;Note=Poor database matches to the full length CDS. Similar to enterohemorrhagic Escherichia coli O157:H7 outer membrane protein OmpG TR:AAG56483 (EMBL:AE005375) (301 aa) fasta scores: E(): 6.3%2C 20.6%25 id in 325 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE005375;product=putative exported protein;protein_id=CAL19494.1;transl_table=11
AL590842.1	EMBL	gene	900524	902710	.	+	.	ID=gene823;Name=YPO0823;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0823
AL590842.1	EMBL	CDS	900524	902710	.	+	0	ID=cds804;Parent=gene823;Dbxref=GOA:Q0WIL1,InterPro:IPR005546,InterPro:IPR006315,UniProtKB/TrEMBL:Q0WIL1,NCBI_GP:CAL19495.1;Name=CAL19495.1;Note=Similar to internal regions of Serratia marcescens serine protease homologue SSP-H2 TR:Q54484 (EMBL:D78380) (1034 aa) fasta scores: E(): 2e-10%2C 21.9%25 id in 725 aa%2C and to Pseudomonas fluorescens probable serine protease PrtB TR:Q9KJ18 (EMBL:AF216702) (1036 aa) fasta scores: E(): 1.2e-13%2C 23.1%25 id in 654 aa;gbkey=CDS;inference=similar to sequence:INSDC:D78380;product=putative exported protein;protein_id=CAL19495.1;transl_table=11
AL590842.1	EMBL	gene	902780	905893	.	+	.	ID=gene824;Name=YPO0824;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0824
AL590842.1	EMBL	CDS	902780	905893	.	+	0	ID=cds805;Parent=gene824;Dbxref=GOA:Q0WIL0,InterPro:IPR003159,InterPro:IPR004103,InterPro:IPR008929,InterPro:IPR008979,InterPro:IPR011013,InterPro:IPR011071,InterPro:IPR012329,InterPro:IPR014718,InterPro:IPR015176,InterPro:IPR015177,InterPro:IPR024200,UniProtKB/TrEMBL:Q0WIL0,NCBI_GP:CAL19496.1;Name=CAL19496.1;Note=C-terminus of CDS is similar to Bacteroides thetaiotaomicron lyase 2 TR:Q45773 (EMBL:L42367) (645 aa) fasta scores: E(): 0%2C 35.9%25 id in 604 aa%2C and internal region of Streptomyces griseus hyaluronidase Hya TR:Q9WXL3 (EMBL:AB028210) (721 aa) fasta scores: E(): 7.2e-06%2C 25.3%25 id in 617 aa;gbkey=CDS;inference=similar to sequence:INSDC:L42367;product=putative exported protein;protein_id=CAL19496.1;transl_table=11
AL590842.1	EMBL	repeat_region	905968	906173	.	+	.	ID=id1934;Note=Also a member of the IS200-like elements which carry a 'G' at nucleotide position 315 of the complete element. 3' termini is represented by misc_feature 908122..908638%3B~Disrupted IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	pseudogene	906113	906169	.	+	.	ID=gene825;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO0824A;part=1/2;pseudo=true
AL590842.1	EMBL	pseudogene	908129	908530	.	+	.	ID=gene825;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO0824A;part=2/2;pseudo=true
AL590842.1	EMBL	CDS	906113	906169	.	+	0	ID=cds806;Parent=gene825;Dbxref=PSEUDO:CAL19497.1;Note=This CDS has been disrupted by the insertion of IS100. Identical to Yersinia pseudotuberculosis transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 5.3e-67%2C 100.000%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	CDS	908129	908530	.	+	0	ID=cds806;Parent=gene825;Dbxref=PSEUDO:CAL19497.1;Note=This CDS has been disrupted by the insertion of IS100. Identical to Yersinia pseudotuberculosis transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 5.3e-67%2C 100.000%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	908219	908437	.	+	.	ID=id1935;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 130.20%2C E-value 3.8e-35;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	repeat_region	906172	908125	.	-	.	ID=id1936;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	906172	906199	.	+	.	ID=id1937;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	906238	907020	.	-	.	ID=gene826;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO0825
AL590842.1	EMBL	CDS	906238	907020	.	-	0	ID=cds807;Parent=gene826;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL19498.1;Name=CAL19498.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL19498.1;transl_table=11
AL590842.1	EMBL	sequence_feature	906313	906852	.	-	.	ID=id1938;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	906670	906693	.	-	.	ID=id1939;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	907017	908039	.	-	.	ID=gene827;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO0826
AL590842.1	EMBL	CDS	907017	908039	.	-	0	ID=cds808;Parent=gene827;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL19499.1;Name=CAL19499.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL19499.1;transl_table=11
AL590842.1	EMBL	sequence_feature	907161	907694	.	-	.	ID=id1940;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	sequence_feature	907923	907988	.	-	.	ID=id1941;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	907932	908015	.	-	.	ID=id1942;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	INVERTED	908098	908125	.	-	.	ID=id1943;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	repeat_region	908122	908638	.	+	.	ID=id1944;Note=Also a member of the IS200-like elements which carry a 'G' at nucleotide position 315 of the complete element. 5' termini is represented by misc_feature 905968..906173%3B~Disrupted IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	908982	910535	.	-	.	ID=gene828;Name=YPO0829;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0829
AL590842.1	EMBL	CDS	908982	910535	.	-	0	ID=cds809;Parent=gene828;Dbxref=GOA:Q7CGX7,InterPro:IPR000917,InterPro:IPR006311,InterPro:IPR017849,InterPro:IPR017850,UniProtKB/TrEMBL:Q7CGX7,NCBI_GP:CAL19500.1;Name=CAL19500.1;Note=Similar to Prevotella sp RS2 mucin-desulfating sulfatase MdsA TR:Q9L5W0 (EMBL:AF248951) (517 aa) fasta scores: E(): 2e-12%2C 25.9%25 id in 486 aa%2C and to Homo sapiens iduronate 2-sulfatase precursor SW:IDS_HUMAN (P22304) (550 aa) fasta scores: E(): 9.3e-11%2C 26.8%25 id in 463 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF248951;product=putative sulfatase;protein_id=CAL19500.1;transl_table=11
AL590842.1	EMBL	sequence_feature	909063	910406	.	-	.	ID=id1945;Note=Pfam match to entry PF00884 Sulfatase%2C Sulfatase%2Cscore 101.60%2C E-value 1.6e-26;gbkey=misc_feature;inference=protein motif:PF00884
AL590842.1	EMBL	gene	911375	912151	.	+	.	ID=gene829;Name=YPO0831;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0831
AL590842.1	EMBL	CDS	911375	912151	.	+	0	ID=cds810;Parent=gene829;Dbxref=GOA:Q7CGX6,InterPro:IPR001034,InterPro:IPR011991,InterPro:IPR014036,UniProtKB/TrEMBL:Q7CGX6,NCBI_GP:CAL19501.1;Name=CAL19501.1;Note=Similar to Escherichia coli galactitol utilization operon repressor GatR SW:GATR_ECOLI (P36930) (259 aa) fasta scores: E(): 2.9e-27%2C 39.0%25 id in 254 aa%2C and to Escherichia coli putative aga operon transcriptional repressor AgaR SW:AGAR_ECOLI (P42902) (269 aa) fasta scores: E(): 0%2C 46.7%25 id in 255 aa;gbkey=CDS;product=DeoR-family regulatory protein;protein_id=CAL19501.1;transl_table=11
AL590842.1	EMBL	sequence_feature	911393	912073	.	+	.	ID=id1946;Note=Pfam match to entry PF00455 deoR%2C Bacterial regulatory proteins%2C deoR family%2C score 254.40%2C E-value 1.5e-72;gbkey=misc_feature;inference=protein motif:PF00455
AL590842.1	EMBL	sequence_feature	911435	911500	.	+	.	ID=id1947;Note=Predicted helix-turn-helix motif with score 1114 (+2.98 SD) at aa 21-42%2C sequence ARVEDLAERFNVSSVTIRSDLS;gbkey=misc_feature
AL590842.1	EMBL	gene	912201	913499	.	+	.	ID=gene830;Name=agaZ;gbkey=Gene;gene=agaZ;gene_biotype=protein_coding;locus_tag=YPO0832
AL590842.1	EMBL	CDS	912201	913499	.	+	0	ID=cds811;Parent=gene830;Dbxref=GOA:Q7CGX5,InterPro:IPR012062,InterPro:IPR013785,UniProtKB/TrEMBL:Q7CGX5,NCBI_GP:CAL19502.1;Name=CAL19502.1;Note=Similar to Escherichia coli putative tagatose 6-phosphate kinase AgaZ SW:AGAZ_ECOLI (P42903) (426 aa) fasta scores: E(): 0%2C 63.6%25 id in 423 aa%2C and to Streptomyces coelicolor tagatose 6-phosphate kinase AgaZ TR:O50522 (EMBL:AL009204) (435 aa) fasta scores: E(): 0%2C57.2%25 id in 418 aa;gbkey=CDS;gene=agaZ;inference=similar to sequence:INSDC:AL009204;product=putative tagatose 6-phosphate kinase;protein_id=CAL19502.1;transl_table=11
AL590842.1	EMBL	gene	913496	914662	.	+	.	ID=gene831;Name=YPO0833;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0833
AL590842.1	EMBL	CDS	913496	914662	.	+	0	ID=cds812;Parent=gene831;Dbxref=GOA:Q7CGX4,InterPro:IPR001347,InterPro:IPR014180,UniProtKB/TrEMBL:Q7CGX4,NCBI_GP:CAL19503.1;Name=CAL19503.1;Note=Similar to Drosophila melanogaster glucosamine--fructose-6-phosphate aminotransferase GfaT TR:Q9Y093 (EMBL:Y18628) (694 aa) fasta scores: E(): 0.00036%2C 22.3%25 id in 363 aa%2C and to Escherichia coli putative tagatose-6-phosphate ketose/aldose isomerase AgaS SW:AGAS_ECOLI (P42907) (384 aa) fasta scores: E(): 0%2C 48.0%25 id in 373 aa;gbkey=CDS;inference=similar to sequence:INSDC:Y18628;product=putative phosphosugar isomerase;protein_id=CAL19503.1;transl_table=11
AL590842.1	EMBL	sequence_feature	913646	914083	.	+	.	ID=id1948;Note=Pfam match to entry PF01380 SIS%2C SIS domain%2C score 42.30%2C E-value 1.1e-08;gbkey=misc_feature;inference=protein motif:PF01380
AL590842.1	EMBL	sequence_feature	914159	914587	.	+	.	ID=id1949;Note=Pfam match to entry PF01380 SIS%2C SIS domain%2C score 45.70%2C E-value 1e-09;gbkey=misc_feature;inference=protein motif:PF01380
AL590842.1	EMBL	gene	914680	915177	.	+	.	ID=gene832;Name=manX;gbkey=Gene;gene=manX;gene_biotype=protein_coding;locus_tag=YPO0834
AL590842.1	EMBL	CDS	914680	915177	.	+	0	ID=cds813;Parent=gene832;Dbxref=GOA:Q7CGX3,InterPro:IPR004720,InterPro:IPR018455,UniProtKB/TrEMBL:Q7CGX3,NCBI_GP:CAL19504.1;Name=CAL19504.1;Note=Similar to Vibrio furnissii phosphenolpyruvate-dependent sugar phosphotransferase system (PTS) permease for mannose subunit IIIMan C-terminal domain%2C ManX TR:P96162 (EMBL:U65015) (157 aa) fasta scores: E(): 6.8e-31%2C 51.6%25 id in 159 aa%2C and to Escherichia coli PTS system%2C N-acetylgalactosamine-specific IIB component 2 AgaV SW:PTPV_ECOLI (P42904) (157 aa) fasta scores: E(): 8.1e-29%2C 48.1%25 id in 158 aa;gbkey=CDS;gene=manX;inference=similar to sequence:INSDC:U65015;product=putative PTS transport protein;protein_id=CAL19504.1;transl_table=11
AL590842.1	EMBL	gene	915224	916012	.	+	.	ID=gene833;Name=YPO0835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0835
AL590842.1	EMBL	CDS	915224	916012	.	+	0	ID=cds814;Parent=gene833;Dbxref=GOA:Q7CGX2,InterPro:IPR004700,UniProtKB/TrEMBL:Q7CGX2,NCBI_GP:CAL19505.1;Name=CAL19505.1;Note=Similar to Vibrio furnissii phosphenolpyruvate-dependent sugar phosphotransferase system (PTS) permease for mannose subunit IIPMman%2C ManY TR:P96163 (EMBL:U65015) (258 aa) fasta scores: E(): 0%2C41.2%25 id in 262 aa%2C and to Escherichia coli PTS dependent N-acetyl-galactosamine-IIC component AgaW TR:Q9KIQ3 (EMBL:AF228498) (259 aa) fasta scores: E(): 0%2C 41.2%25 id in 262 aa;gbkey=CDS;inference=similar to sequence:INSDC:U65015;product=putative PTS permease protein;protein_id=CAL19505.1;transl_table=11
AL590842.1	EMBL	sequence_feature	915503	915571	.	+	.	ID=id1950;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	915629	915697	.	+	.	ID=id1951;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	915740	915805	.	+	.	ID=id1952;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	915866	915934	.	+	.	ID=id1953;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	916002	916892	.	+	.	ID=gene834;Name=YPO0836;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0836
AL590842.1	EMBL	CDS	916002	916892	.	+	0	ID=cds815;Parent=gene834;Dbxref=GOA:Q74QF1,InterPro:IPR004704,UniProtKB/TrEMBL:Q74QF1,NCBI_GP:CAL19506.1;Name=CAL19506.1;Note=Similar to Vibrio furnissii phosphenolpyruvate-dependent sugar phosphotransferase system (PTS) permease for mannose subunit IIBMan ManZ TR:P96164 (EMBL:U65015) (293 aa) fasta scores: E(): 0%2C43.8%25 id in 272 aa%2C and to Escherichia coli PTS dependent N-acetyl-galactosamine- and galactosamine IIA component AgaE TR:Q9KIQ2 (EMBL:AF228498) (292 aa) fasta scores: E(): 0%2C 41.7%25 id in 266 aa;gbkey=CDS;inference=similar to sequence:INSDC:U65015;product=putative PTS permease protein;protein_id=CAL19506.1;transl_table=11
AL590842.1	EMBL	sequence_feature	916485	916553	.	+	.	ID=id1954;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	916614	916682	.	+	.	ID=id1955;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	916695	916718	.	+	.	ID=id1956;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	916725	916793	.	+	.	ID=id1957;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	916812	916880	.	+	.	ID=id1958;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	916978	917418	.	+	.	ID=gene835;Name=YPO0837;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0837
AL590842.1	EMBL	CDS	916978	917418	.	+	0	ID=cds816;Parent=gene835;Dbxref=GOA:Q0WIK0,InterPro:IPR004701,UniProtKB/TrEMBL:Q0WIK0,NCBI_GP:CAL19507.1;Name=CAL19507.1;Note=Similar to Vibrio furnissii phosphenolpyruvate-dependent sugar phosphotransferase system (PTS) permease for mannose subunit IIIMan N-terminal domain%2C ManW TR:P96165 (EMBL:U65015) (146 aa) fasta scores: E(): 3.3e-18%2C 37.7%25 id in 146 aa%2C and to Escherichia coli PTS dependent N-acetyl-galactosamine- and galactosamine IIA component AgaF TR:Q9KIQ1 (EMBL:AF228498) (144 aa) fasta scores: E(): 1.4e-13%2C 37.4%25 id in 131 aa;gbkey=CDS;inference=similar to sequence:INSDC:U65015;product=putative PTS permease protein;protein_id=CAL19507.1;transl_table=11
AL590842.1	EMBL	gene	917421	918587	.	+	.	ID=gene836;Name=YPO0838;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0838
AL590842.1	EMBL	CDS	917421	918587	.	+	0	ID=cds817;Parent=gene836;Dbxref=GOA:Q7CGX1,InterPro:IPR003764,InterPro:IPR011059,UniProtKB/TrEMBL:Q7CGX1,NCBI_GP:CAL19508.1;Name=CAL19508.1;Note=Similar to Vibrio furnissii N-acetylglucosamine-6-phosphate deacetylase ManD SW:NAGA_VIBFU (P96166) (399 aa) fasta scores: E(): 0%2C 43.4%25 id in 373 aa%2C and to Escherichia coli N-acetyl-galactosamine-6-phosphate deacetylase AgaA TR:Q9KIQ0 (EMBL:AF228498) (384 aa) fasta scores: E(): 0%2C39.7%25 id in 378 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF228498;product=putative acetylglucosamine-6-phosphate deacetylase;protein_id=CAL19508.1;transl_table=11
AL590842.1	EMBL	gene	918783	919538	.	+	.	ID=gene837;Name=kduD2;gbkey=Gene;gene=kduD2;gene_biotype=protein_coding;locus_tag=YPO0839
AL590842.1	EMBL	CDS	918783	919538	.	+	0	ID=cds818;Parent=gene837;Dbxref=GOA:Q7CGX0,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR011286,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:Q7CGX0,NCBI_GP:CAL19509.1;Name=CAL19509.1;Note=Similar to Escherichia coli 2-deoxy-D-gluconate 3-dehydrogenase KduD SW:KDUD_ECOLI (P37769) (253 aa) fasta scores: E(): 0%2C 68.1%25 id in 251 aa%2C and to Erwinia chrysanthemi 2-deoxy-D-gluconate 3-dehydrogenase KduD SW:KDUD_ERWCH (Q05528) (253 aa) fasta scores: E(): 0%2C 65.7%25 id in 251 aa. Similar to YPO1724 (68.1%25 identity in 251 aa overlap);gbkey=CDS;gene=kduD2;product=2-deoxy-D-gluconate 3-dehydrogenase;protein_id=CAL19509.1;transl_table=11
AL590842.1	EMBL	sequence_feature	918807	919358	.	+	.	ID=id1959;Note=Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase%2C score 239.00%2C E-value 6.5e-68;gbkey=misc_feature;gene=kduD2;inference=protein motif:PF00106
AL590842.1	EMBL	sequence_feature	919209	919295	.	+	.	ID=id1960;Note=PS00061 Short-chain dehydrogenases/reductases family signature.;gbkey=misc_feature;gene=kduD2;inference=protein motif:ProSite:PS00061
AL590842.1	EMBL	sequence_feature	919422	919514	.	+	.	ID=id1961;Note=Pfam match to entry PF00678 adh_short_C2%2C Short chain dehydrogenase/reductase C-terminus%2C score 44.90%2CE-value 4.5e-11;gbkey=misc_feature;gene=kduD2;inference=protein motif:PF00678
AL590842.1	EMBL	gene	919554	920612	.	+	.	ID=gene838;Name=YPO0840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0840
AL590842.1	EMBL	CDS	919554	920612	.	+	0	ID=cds819;Parent=gene838;Dbxref=GOA:Q7CGW9,InterPro:IPR008928,InterPro:IPR010905,InterPro:IPR012341,UniProtKB/TrEMBL:Q7CGW9,NCBI_GP:CAL19510.1;Name=CAL19510.1;Note=Similar to Bacillus halodurans conserved hypothetical protein BH0485 TR:Q9KFJ4 (EMBL:AP001508) (365 aa) fasta scores: E(): 1.9e-08%2C 23.9%25 id in 356 aa%2C and to Bacillus subtilis conserved hypothetical protein YteR TR:O34559 (EMBL:AF008220) (373 aa) fasta scores: E(): 5.3e-07%2C 25.3%25 id in 332 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001508;product=conserved hypothetical protein;protein_id=CAL19510.1;transl_table=11
AL590842.1	EMBL	gene	920856	922082	.	+	.	ID=gene839;Name=YPO0841;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0841
AL590842.1	EMBL	CDS	920856	922082	.	+	0	ID=cds820;Parent=gene839;Dbxref=GOA:Q7CGW8,InterPro:IPR007197,InterPro:IPR013785,InterPro:IPR023867,InterPro:IPR023885,UniProtKB/TrEMBL:Q7CGW8,NCBI_GP:CAL19511.1;Name=CAL19511.1;Note=Similar to Bacteroides thetaiotaomicron chondro-6-sulfatase regulatory protein ChuR SW:CHUR_BACTN (Q02550) (401 aa) fasta scores: E(): 0%2C 39.4%25 id in 381 aa%2Cand to Salmonella typhimurium LT2 hypothetical protein STMD1.23 TR:Q9L6N0 (EMBL:AF233324) (431 aa) fasta scores: E(): 0%2C 46.2%25 id in 396 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF233324;product=putative regulatory protein;protein_id=CAL19511.1;transl_table=11
AL590842.1	EMBL	gene	922103	923710	.	+	.	ID=gene840;Name=YPO0842;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0842
AL590842.1	EMBL	CDS	922103	923710	.	+	0	ID=cds821;Parent=gene840;Dbxref=GOA:Q7CGW7,InterPro:IPR000917,InterPro:IPR017849,InterPro:IPR017850,InterPro:IPR024607,UniProtKB/TrEMBL:Q7CGW7,NCBI_GP:CAL19512.1;Name=CAL19512.1;Note=Similar to Hemicentrotus pulcherrimus arylsulfatase SW:ARS_HEMPU (P14000) (551 aa) fasta scores: E(): 3e-19%2C28.5%25 id in 403 aa%2C and to Escherichia coli putative sulfatase YdeN SW:YDEN_ECOLI (P77318) (560 aa) fasta scores: E(): 0%2C 39.6%25 id in 508 aa;gbkey=CDS;product=putative sulfatase;protein_id=CAL19512.1;transl_table=11
AL590842.1	EMBL	sequence_feature	922202	923563	.	+	.	ID=id1962;Note=Pfam match to entry PF00884 Sulfatase%2C Sulfatase%2Cscore 287.40%2C E-value 1.7e-82;gbkey=misc_feature;inference=protein motif:PF00884
AL590842.1	EMBL	sequence_feature	922553	922585	.	+	.	ID=id1963;Note=PS00149 Sulfatases signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00149
AL590842.1	EMBL	gene	923833	925320	.	+	.	ID=gene841;Name=YPO0843;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0843
AL590842.1	EMBL	CDS	923833	925320	.	+	0	ID=cds822;Parent=gene841;Dbxref=InterPro:IPR016624,UniProtKB/TrEMBL:Q7CGW6,NCBI_GP:CAL19513.1;Name=CAL19513.1;Note=Poor database hits. Weakly similar to internal region of Streptomyces coelicolor hypothetical protein SCF91.24 TR:Q9RJA0 (EMBL:AL132973) (631 aa) fasta scores: E(): 3.8e-24%2C 32.1%25 id in 361 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL132973;product=hypothetical protein;protein_id=CAL19513.1;transl_table=11
AL590842.1	EMBL	sequence_feature	924334	924399	.	+	.	ID=id1964;Note=Predicted helix-turn-helix motif with score 1221 (+3.35 SD) at aa 168-189%2C sequence CESADLALALWLSHESVWQAFT;gbkey=misc_feature
AL590842.1	EMBL	gene	925429	926283	.	+	.	ID=gene842;Name=agaY;gbkey=Gene;gene=agaY;gene_biotype=protein_coding;gene_synonym=kba;locus_tag=YPO0844
AL590842.1	EMBL	CDS	925429	926283	.	+	0	ID=cds823;Parent=gene842;Dbxref=GOA:Q7CGW5,InterPro:IPR000771,InterPro:IPR011288,InterPro:IPR013785,UniProtKB/TrEMBL:Q7CGW5,NCBI_GP:CAL19514.1;Name=CAL19514.1;Note=Similar to Escherichia coli tagatose-bisphosphate aldolase AgaY SW:AGAY_ECOLI (P42908) (286 aa) fasta scores: E(): 0%2C 59.4%25 id in 283 aa%2C and to Vibrio furnissii putative aldolase ManF TR:P96167 (EMBL:U65015) (287 aa) fasta scores: E(): 0%2C 66.1%25 id in 283 aa;gbkey=CDS;gene=agaY;inference=similar to sequence:INSDC:U65015;product=putative aldolase;protein_id=CAL19514.1;transl_table=11
AL590842.1	EMBL	sequence_feature	925432	926280	.	+	.	ID=id1965;Note=Pfam match to entry PF01116 F_bP_aldolase%2CFructose-bisphosphate aldolase class-II%2C score 437.40%2CE-value 1.3e-127;gbkey=misc_feature;gene=agaY;inference=protein motif:PF01116
AL590842.1	EMBL	sequence_feature	925819	925854	.	+	.	ID=id1966;Note=PS00806 Fructose-bisphosphate aldolase class-II signature 2.;gbkey=misc_feature;gene=agaY;inference=protein motif:ProSite:PS00806
AL590842.1	EMBL	gene	926307	926885	.	+	.	ID=gene843;Name=YPO0845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0845
AL590842.1	EMBL	CDS	926307	926885	.	+	0	ID=cds824;Parent=gene843;Dbxref=InterPro:IPR002818,InterPro:IPR029062,UniProtKB/TrEMBL:Q7CGW4,NCBI_GP:CAL19515.1;Name=CAL19515.1;Note=Similar to Homo sapiens oncogenic protein DJ-1 TR:Q99497 (EMBL:D61380) (189 aa) fasta scores: E(): 2.2e-12%2C 32.7%25 id in 171 aa%2C and to Borrelia burgdorferi putative 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein ThiJ BB0621 TR:O51566 (EMBL:AE001163) (184 aa) fasta scores: E(): 8.6e-17%2C 35.0%25 id in 160 aa;gbkey=CDS;inference=similar to sequence:INSDC:D61380;product=ThiJ/PfpI-family thiamine biogenesis protein;protein_id=CAL19515.1;transl_table=11
AL590842.1	EMBL	sequence_feature	926316	926768	.	+	.	ID=id1967;Note=Pfam match to entry PF01965 ThiJ%2C ThiJ/PfpI family%2Cscore 77.60%2C E-value 2.6e-19;gbkey=misc_feature;inference=protein motif:PF01965
AL590842.1	EMBL	gene	927126	928208	.	-	.	ID=gene844;Name=YPO0846;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0846
AL590842.1	EMBL	CDS	927126	928208	.	-	0	ID=cds825;Parent=gene844;Dbxref=GOA:Q7CGW3,InterPro:IPR000843,InterPro:IPR010982,InterPro:IPR028082,UniProtKB/TrEMBL:Q7CGW3,NCBI_GP:CAL19516.1;Name=CAL19516.1;Note=Similar to Sphingomonas sp transcriptional regulator CcpA TR:Q9KWU0 (EMBL:AB011415) (353 aa) fasta scores: E(): 1.1e-20%2C 27.2%25 id in 342 aa%2C and to Vibrio cholerae LacI-family transcriptional repressor VC2677 TR:Q9KNQ4 (EMBL:AE004333) (335 aa) fasta scores: E(): 6.8e-16%2C 25.7%25 id in 338 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004333;product=LacI-family regulatory protein;protein_id=CAL19516.1;transl_table=11
AL590842.1	EMBL	sequence_feature	927285	928034	.	-	.	ID=id1968;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 31.20%2C E-value 8.4e-08;gbkey=misc_feature;inference=protein motif:PF00532
AL590842.1	EMBL	sequence_feature	928131	928196	.	-	.	ID=id1969;Note=Predicted helix-turn-helix motif with score 2041 (+6.14 SD) at aa 5-26%2C sequence LKIQEIANQTGLSISTVSRVLA;gbkey=misc_feature
AL590842.1	EMBL	gene	928602	929909	.	+	.	ID=gene845;Name=YPO0847;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0847
AL590842.1	EMBL	CDS	928602	929909	.	+	0	ID=cds826;Parent=gene845;Dbxref=GOA:Q7CGW2,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q7CGW2,NCBI_GP:CAL19517.1;Name=CAL19517.1;Note=Similar to Escherichia coli hexuronate transport protein ExuT SW:EXUT_ECOLI (P42609) (472 aa) fasta scores: E(): 0%2C 47.0%25 id in 419 aa%2C and to Erwinia chrysanthemi probable galacturonate transport protein ExuT TR:P94774 (EMBL:U86689) (345 aa) fasta scores: E(): 0%2C 44.0%25 id in 332 aa;gbkey=CDS;inference=similar to sequence:INSDC:U86689;product=putative sugar transporter;protein_id=CAL19517.1;transl_table=11
AL590842.1	EMBL	sequence_feature	928659	928712	.	+	.	ID=id1970;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	928668	929882	.	+	.	ID=id1971;Note=Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporter%2C score -86.30%2C E-value 0.00088;gbkey=misc_feature;inference=protein motif:PF00083
AL590842.1	EMBL	sequence_feature	928836	928904	.	+	.	ID=id1972;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	929040	929108	.	+	.	ID=id1973;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	929118	929186	.	+	.	ID=id1974;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	929319	929387	.	+	.	ID=id1975;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	929430	929498	.	+	.	ID=id1976;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	929535	929603	.	+	.	ID=id1977;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	929616	929684	.	+	.	ID=id1978;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	929721	929789	.	+	.	ID=id1979;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	929817	929876	.	+	.	ID=id1980;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	930057	932435	.	+	.	ID=gene846;Name=YPO0848;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0848
AL590842.1	EMBL	CDS	930057	932435	.	+	0	ID=cds827;Parent=gene846;Dbxref=GOA:Q7CGW1,InterPro:IPR000322,InterPro:IPR011013,InterPro:IPR017853,InterPro:IPR025887,UniProtKB/TrEMBL:Q7CGW1,NCBI_GP:CAL19518.1;Name=CAL19518.1;Note=Internal region of CDS similar internal region of Solanum tuberosum alpha-glucosidase TR:O24375 (EMBL:AJ001374) (919 aa) fasta scores: E(): 0%2C 28.9%25 id in 610 aa. Full length CDS similar to Bacillus halodurans hypothetical glucosidase BH0704 TR:Q9KEZ5 (EMBL:AP001509) (801 aa) fasta scores: E(): 0%2C 52.4%25 id in 757 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001509;product=putative glucosidase;protein_id=CAL19518.1;transl_table=11
AL590842.1	EMBL	sequence_feature	930492	930866	.	+	.	ID=id1981;Note=Pfam match to entry PF01055 Glyco_hydro_31%2C Glycosyl hydrolases family 31%2C score 42.30%2C E-value 5.6e-12;gbkey=misc_feature;inference=protein motif:PF01055
AL590842.1	EMBL	sequence_feature	930552	930596	.	+	.	ID=id1982;Note=PS00066 Hydroxymethylglutaryl-coenzyme A reductases signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS00066
AL590842.1	EMBL	sequence_feature	931404	931673	.	+	.	ID=id1983;Note=Pfam match to entry PF01055 Glyco_hydro_31%2C Glycosyl hydrolases family 31%2C score 70.60%2C E-value 3e-20;gbkey=misc_feature;inference=protein motif:PF01055
AL590842.1	EMBL	sequence_feature	931734	932234	.	+	.	ID=id1984;Note=Pfam match to entry PF01055 Glyco_hydro_31%2C Glycosyl hydrolases family 31%2C score 107.30%2C E-value 5.2e-31;gbkey=misc_feature;inference=protein motif:PF01055
AL590842.1	EMBL	gene	932764	933837	.	-	.	ID=gene847;Name=lacI;gbkey=Gene;gene=lacI;gene_biotype=protein_coding;locus_tag=YPO0849
AL590842.1	EMBL	CDS	932764	933837	.	-	0	ID=cds828;Parent=gene847;Dbxref=GOA:Q0WII8,InterPro:IPR000843,InterPro:IPR010982,InterPro:IPR028082,UniProtKB/TrEMBL:Q0WII8,NCBI_GP:CAL19519.1;Name=CAL19519.1;Note=Similar to Escherichia coli lactose operon repressor LacI SW:LACI_ECOLI (P03023) (360 aa) fasta scores: E(): 0%2C43.3%25 id in 353 aa%2C and to Klebsiella pneumoniae lactose operon repressor LacI SW:LACI_KLEPN (P06220) (354 aa) fasta scores: E(): 0%2C 43.9%25 id in 355 aa;gbkey=CDS;gene=lacI;product=lactose operon repressor;protein_id=CAL19519.1;transl_table=11
AL590842.1	EMBL	sequence_feature	932932	933654	.	-	.	ID=id1985;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 70.70%2C E-value 3.1e-17;gbkey=misc_feature;gene=lacI;inference=protein motif:PF00532
AL590842.1	EMBL	sequence_feature	933745	933828	.	-	.	ID=id1986;Note=Pfam match to entry PF00356 lacI%2C Bacterial regulatory proteins%2C lacI family%2C score 47.40%2C E-value 5.3e-12;gbkey=misc_feature;gene=lacI;inference=protein motif:PF00356
AL590842.1	EMBL	sequence_feature	933757	933822	.	-	.	ID=id1987;Note=Predicted helix-turn-helix motif with score 2321 (+7.09 SD) at aa 6-27%2C sequence TTLEDVARHAGVSYQTVSRVLN;gbkey=misc_feature;gene=lacI
AL590842.1	EMBL	sequence_feature	933760	933816	.	-	.	ID=id1988;Note=PS00356 Bacterial regulatory proteins%2C lacI family signature.;gbkey=misc_feature;gene=lacI;inference=protein motif:ProSite:PS00356
AL590842.1	EMBL	gene	934109	935368	.	+	.	ID=gene848;Name=lamB;gbkey=Gene;gene=lamB;gene_biotype=protein_coding;gene_synonym=malB;locus_tag=YPO0850
AL590842.1	EMBL	CDS	934109	935368	.	+	0	ID=cds829;Parent=gene848;Dbxref=GOA:Q8ZHP0,InterPro:IPR003192,InterPro:IPR023738,NCBI_GP:CAL19520.1;Name=CAL19520.1;Note=Similar to Aeromonas salmonicida maltoporin LamB SW:LAMB_AERSA (Q44287) (445 aa) fasta scores: E(): 0%2C 44.7%25 id in 447 aa%2C and to Escherichia coli maltoporin LamB SW:LAMB_ECOLI (P02943) (446 aa) fasta scores: E(): 0%2C 33.5%25 id in 462 aa;gbkey=CDS;gene=lamB;product=maltoporin;protein_id=CAL19520.1;transl_table=11
AL590842.1	EMBL	sequence_feature	934193	935365	.	+	.	ID=id1989;Note=Pfam match to entry PF02264 LamB%2C LamB porin%2C score 351.70%2C E-value 8e-102;gbkey=misc_feature;gene=lamB;inference=protein motif:PF02264
AL590842.1	EMBL	gene	935741	936052	.	-	.	ID=gene849;Name=YPO0851;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0851
AL590842.1	EMBL	CDS	935741	936052	.	-	0	ID=cds830;Parent=gene849;Dbxref=GOA:Q7CGW0,InterPro:IPR001996,InterPro:IPR018113,UniProtKB/TrEMBL:Q7CGW0,NCBI_GP:CAL19521.1;Name=CAL19521.1;Note=Probable gene remnant%2C similar to C-terminal regions of Escherichia coli phosphenolpyruvate-dependent sugar phosphotransferase system (PTS) glucose-specific IIBC component PtsG SW:PTGB_ECOLI (P05053) (477 aa) fasta scores: E(): 2.3e-11%2C 54.1%25 id in 74 aa%2C and to Salmonella typhimurium PTS system%2C glucose-specific IIBC component PtsG SW:PTGB_SALTY (P37439) (477 aa) fasta scores: E(): 4.3e-11%2C 52.7%25 id in 74 aa%3B~was marked partial;gbkey=CDS;product=PTS transport protein (partial);protein_id=CAL19521.1;transl_table=11
AL590842.1	EMBL	sequence_feature	935867	935971	.	-	.	ID=id1990;Note=Pfam match to entry PF00367 PTS_EIIB%2Cphosphotransferase system%2C EIIB%2C score 58.40%2C E-value 2.5e-15;gbkey=misc_feature;inference=protein motif:PF00367
AL590842.1	EMBL	sequence_feature	935882	935935	.	-	.	ID=id1991;Note=PS01035 PTS EIIB domains cysteine phosphorylation site signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01035
AL590842.1	EMBL	gene	936164	938224	.	-	.	ID=gene850;Name=bgaB;gbkey=Gene;gene=bgaB;gene_biotype=protein_coding;gene_synonym=pbg;locus_tag=YPO0852
AL590842.1	EMBL	CDS	936164	938224	.	-	0	ID=cds831;Parent=gene850;Dbxref=GOA:Q7CGV9,InterPro:IPR003476,InterPro:IPR013529,InterPro:IPR013738,InterPro:IPR013739,InterPro:IPR013781,InterPro:IPR017853,InterPro:IPR029062,UniProtKB/TrEMBL:Q7CGV9,NCBI_GP:CAL19522.1;Name=CAL19522.1;Note=Similar to Clostridium perfringens beta-galactosidase Pbg TR:Q59312 (EMBL:D49537) (676 aa) fasta scores: E(): 0%2C 51.4%25 id in 675 aa%2C and to Bacillus circulans beta-D-galactosidase BgaB TR:Q45093 (EMBL:L03425) (690 aa) fasta scores: E(): 0%2C 61.6%25 id in 685 aa;gbkey=CDS;gene=bgaB;inference=similar to sequence:INSDC:L03425;product=puative beta-galactosidase;protein_id=CAL19522.1;transl_table=11
AL590842.1	EMBL	sequence_feature	936344	937624	.	-	.	ID=id1992;Note=Pfam match to entry PF02449 Glyco_hydro_42%2C %2C score 714.90%2C E-value 3.8e-211;gbkey=misc_feature;gene=bgaB;inference=protein motif:PF02449
AL590842.1	EMBL	gene	938275	939477	.	-	.	ID=gene851;Name=YPO0853;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0853
AL590842.1	EMBL	CDS	938275	939477	.	-	0	ID=cds832;Parent=gene851;Dbxref=GOA:Q7CGV8,InterPro:IPR011683,InterPro:IPR013781,InterPro:IPR017853,UniProtKB/TrEMBL:Q7CGV8,NCBI_GP:CAL19523.1;Name=CAL19523.1;Note=Similar to Pseudomonas fluorescens arabinogalactan endo-1%2C4-beta-galactosidase GalA SW:GANA_PSEFL (P48841) (376 aa) fasta scores: E(): 0%2C 33.3%25 id in 387 aa%2C and to N-terminus of Thermotoga maritima putative arabinogalactan endo-1%2C4-beta-galactosidase TM1201 TR:Q9X0S8 (EMBL:AE001777) (606 aa) fasta scores: E(): 0%2C 50.3%25 id in 384 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE001777;product=putative galactosidase;protein_id=CAL19523.1;transl_table=11
AL590842.1	EMBL	gene	939482	940333	.	-	.	ID=gene852;Name=YPO0854;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0854
AL590842.1	EMBL	CDS	939482	940333	.	-	0	ID=cds833;Parent=gene852;Dbxref=GOA:Q7CGV7,InterPro:IPR000515,UniProtKB/TrEMBL:Q7CGV7,NCBI_GP:CAL19524.1;Name=CAL19524.1;Note=Similar to Streptococcus pneumoniae maltodextrin transport system permease protein MalD SW:MALD_STRPN (Q04699) (277 aa) fasta scores: E(): 0%2C 42.0%25 id in 274 aa%2Cand to Bacillus halodurans hypothetical maltose/maltodextrin transport system BH2021 TR:Q9KBA7 (EMBL:AP001514) (283 aa) fasta scores: E(): 0%2C 69.6%25 id in 280 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001514;product=putative maltodextrin permease protein;protein_id=CAL19524.1;transl_table=11
AL590842.1	EMBL	sequence_feature	939530	939595	.	-	.	ID=id1993;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	939614	939838	.	-	.	ID=id1994;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 64.60%2C E-value 2.1e-15;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	939704	939769	.	-	.	ID=id1995;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	939749	939835	.	-	.	ID=id1996;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	939833	939898	.	-	.	ID=id1997;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	939929	939994	.	-	.	ID=id1998;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	940031	940087	.	-	.	ID=id1999;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	940229	940294	.	-	.	ID=id2000;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	940345	941652	.	-	.	ID=gene853;Name=YPO0855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0855
AL590842.1	EMBL	CDS	940345	941652	.	-	0	ID=cds834;Parent=gene853;Dbxref=GOA:Q7CGV6,InterPro:IPR000515,UniProtKB/TrEMBL:Q7CGV6,NCBI_GP:CAL19525.1;Name=CAL19525.1;Note=Similar to Streptococcus pneumoniae maltodextrin transport system permease protein MalC SW:MALC_STRPN (Q04698) (430 aa) fasta scores: E(): 0%2C 45.5%25 id in 422 aa%2Cand to Bacillus subtilis hypothetical protein YvfL TR:O07010 (EMBL:Z94043) (421 aa) fasta scores: E(): 0%2C67.8%25 id in 419 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z94043;product=putative maltodextrin transport permease;protein_id=CAL19525.1;transl_table=11
AL590842.1	EMBL	sequence_feature	940384	940449	.	-	.	ID=id2001;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	940477	940716	.	-	.	ID=id2002;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 50.40%2C E-value 3.8e-11;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	940573	940638	.	-	.	ID=id2003;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	940627	940713	.	-	.	ID=id2004;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	940702	940767	.	-	.	ID=id2005;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	940798	940854	.	-	.	ID=id2006;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	940876	940941	.	-	.	ID=id2007;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	940972	941037	.	-	.	ID=id2008;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	941059	941124	.	-	.	ID=id2009;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	941185	941250	.	-	.	ID=id2010;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	941347	941412	.	-	.	ID=id2011;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	941458	941523	.	-	.	ID=id2012;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	941812	943074	.	-	.	ID=gene854;Name=YPO0856;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0856
AL590842.1	EMBL	CDS	941812	943074	.	-	0	ID=cds835;Parent=gene854;Dbxref=GOA:Q7CGV5,InterPro:IPR006060,UniProtKB/TrEMBL:Q7CGV5,NCBI_GP:CAL19526.1;Name=CAL19526.1;Note=Similar to Streptococcus pneumoniae maltose/maltodextrin-binding protein MalX SW:MALX_STRPN (P29850) (423 aa) fasta scores: E(): 0%2C 33.9%25 id in 383 aa%2Cand to Bacillus subtilis hypothetical protein YvfK TR:O07009 (EMBL:Z94043) (421 aa) fasta scores: E(): 0%2C49.1%25 id in 401 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z94043;product=putative sugar-binding protein;protein_id=CAL19526.1;transl_table=11
AL590842.1	EMBL	sequence_feature	941845	942675	.	-	.	ID=id2013;Note=Pfam match to entry PF01547 SBP_bacterial_1%2CBacterial extracellular solute-binding protein%2C score 154.20%2C E-value 2.2e-42;gbkey=misc_feature;inference=protein motif:PF01547
AL590842.1	EMBL	gene	943410	944510	.	+	.	ID=gene855;Name=YPO0857;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0857
AL590842.1	EMBL	CDS	943410	944510	.	+	0	ID=cds836;Parent=gene855;Dbxref=GOA:Q0WII0,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR008995,InterPro:IPR012340,InterPro:IPR013611,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WII0,NCBI_GP:CAL19527.1;Name=CAL19527.1;Note=Similar to Agrobacterium radiobacter lactose ABC transporter%2C ATP-binding protein LacK SW:LACK_AGRRD (Q01937) (363 aa) fasta scores: E(): 0%2C 55.6%25 id in 365 aa%2Cand to Escherichia coli maltose/maltodextrin ABC transporter%2C ATP-binding protein MalK SW:MALK_ECOLI (P02914) (371 aa) fasta scores: E(): 0%2C 52.1%25 id in 359 aa. Similar to YPO3712 (52.7%25 identity in 357 aa overlap)%2CYPO3469 (51.6%25 identity in 372 aa overlap) and YPO1896 (59.1%25 identity in 286 aa overlap).;gbkey=CDS;product=sugar transport ATP-binding protein;protein_id=CAL19527.1;transl_table=11
AL590842.1	EMBL	sequence_feature	943494	944039	.	+	.	ID=id2014;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 212.00%2C E-value 9.1e-60;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	943515	943538	.	+	.	ID=id2015;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	943809	943853	.	+	.	ID=id2016;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	945059	946567	.	+	.	ID=gene856;Name=YPO0858;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0858
AL590842.1	EMBL	CDS	945059	946567	.	+	0	ID=cds837;Parent=gene856;Dbxref=GOA:Q0WIH9,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WIH9,NCBI_GP:CAL19528.1;Name=CAL19528.1;Note=Similar to Escherichia coli ribose ABC transporter%2CATP-binding protein RbsA SW:RBSA_ECOLI (P04983) (501 aa) fasta scores: E(): 0%2C 43.0%25 id in 493 aa%2C and to Vibrio cholerae ribose ABC transporter%2C ATP-binding protein VCA0128 TR:Q9KN37 (EMBL:AE004354) (500 aa) fasta scores: E(): 0%2C 43.1%25 id in 490 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004354;product=sugar transport ATP-binding protein;protein_id=CAL19528.1;transl_table=11
AL590842.1	EMBL	sequence_feature	945176	945739	.	+	.	ID=id2017;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 135.40%2C E-value 1e-36;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	945197	945220	.	+	.	ID=id2018;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	945923	946501	.	+	.	ID=id2019;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 103.30%2C E-value 4.7e-27;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	946274	946318	.	+	.	ID=id2020;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	946633	947643	.	+	.	ID=gene857;Name=YPO0859;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0859
AL590842.1	EMBL	CDS	946633	947643	.	+	0	ID=cds838;Parent=gene857;Dbxref=GOA:Q7CGV4,InterPro:IPR001851,UniProtKB/TrEMBL:Q7CGV4,NCBI_GP:CAL19529.1;Name=CAL19529.1;Note=Similar to Escherichia coli ribose transport system permease protein RbsC SW:RBSC_ECOLI (P04984) (321 aa) fasta scores: E(): 0%2C 49.4%25 id in 312 aa%2C and to Vibrio cholerae ribose ABC transporter%2C permease protein VCA0129 TR:Q9KN36 (EMBL:AE004354) (332 aa) fasta scores: E(): 0%2C 52.4%25 id in 290 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004354;product=sugar transport system permease;protein_id=CAL19529.1;transl_table=11
AL590842.1	EMBL	sequence_feature	946690	946758	.	+	.	ID=id2021;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	946801	946869	.	+	.	ID=id2022;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	946882	946935	.	+	.	ID=id2023;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	946978	947046	.	+	.	ID=id2024;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	947065	947133	.	+	.	ID=id2025;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	947176	947244	.	+	.	ID=id2026;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	947335	947403	.	+	.	ID=id2027;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	947446	947514	.	+	.	ID=id2028;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	948078	949079	.	+	.	ID=gene858;Name=YPO0860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0860
AL590842.1	EMBL	CDS	948078	949079	.	+	0	ID=cds839;Parent=gene858;Dbxref=InterPro:IPR025997,InterPro:IPR028082,UniProtKB/TrEMBL:Q0WIH7,NCBI_GP:CAL19530.1;Name=CAL19530.1;Note=Similar to Escherichia coli D-ribose-binding periplasmic protein precursor RbsB SW:RBSB_ECOLI (P02925) (296 aa) fasta scores: E(): 2.2e-17%2C 32.5%25 id in 295 aa%2Cand to Bacillus halodurans sugar ABC transporter BH2323 TR:Q9KAG4 (EMBL:AP001515) (323 aa) fasta scores: E(): 2.6e-24%2C 36.3%25 id in 251 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001515;product=sugar-binding periplasmic protein;protein_id=CAL19530.1;transl_table=11
AL590842.1	EMBL	sequence_feature	948150	948908	.	+	.	ID=id2029;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 11.50%2C E-value 3.2e-06;gbkey=misc_feature;inference=protein motif:PF00532
AL590842.1	EMBL	gene	949858	950376	.	+	.	ID=gene859;Name=YPO0862;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0862
AL590842.1	EMBL	CDS	949858	950376	.	+	0	ID=cds840;Parent=gene859;Dbxref=UniProtKB/TrEMBL:Q7CGV3,NCBI_GP:CAL19531.1;Name=CAL19531.1;Note=No significant database matches to the full length CDS;gbkey=CDS;product=putative exported protein;protein_id=CAL19531.1;transl_table=11
AL590842.1	EMBL	gene	950752	951609	.	+	.	ID=gene860;Name=YPO0863;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0863
AL590842.1	EMBL	CDS	950752	951609	.	+	0	ID=cds841;Parent=gene860;Dbxref=UniProtKB/TrEMBL:Q7CGV2,NCBI_GP:CAL19532.1;Name=CAL19532.1;Note=Similar to Escherichia coli hypothetical lipoprotein YaeF SW:YAEF_ECOLI (P37056) (274 aa) fasta scores: E(): 0%2C43.1%25 id in 253 aa;gbkey=CDS;product=putative lipoprotein;protein_id=CAL19532.1;transl_table=11
AL590842.1	EMBL	sequence_feature	950779	950811	.	+	.	ID=id2030;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	952033	952713	.	+	.	ID=gene861;Name=YPO0864;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0864
AL590842.1	EMBL	CDS	952033	952713	.	+	0	ID=cds842;Parent=gene861;Dbxref=InterPro:IPR005149,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CGV1,NCBI_GP:CAL19533.1;Name=CAL19533.1;Note=Similar to Escherichia coli hypothetical protein YqjI SW:YQJI_ECOLI (Q46872) (207 aa) fasta scores: E(): 1.1e-17%2C 36.3%25 id in 201 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19533.1;transl_table=11
AL590842.1	EMBL	gene	952713	953033	.	+	.	ID=gene862;Name=YPO0865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0865
AL590842.1	EMBL	CDS	952713	953033	.	+	0	ID=cds843;Parent=gene862;Dbxref=InterPro:IPR024476,UniProtKB/TrEMBL:Q7CGV0,NCBI_GP:CAL19534.1;Name=CAL19534.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19534.1;transl_table=11
AL590842.1	EMBL	gene	953116	953421	.	-	.	ID=gene863;Name=YPO0866;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0866
AL590842.1	EMBL	CDS	953116	953421	.	-	0	ID=cds844;Parent=gene863;Dbxref=InterPro:IPR008727,UniProtKB/TrEMBL:Q7CGU9,NCBI_GP:CAL19535.1;Name=CAL19535.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA1508 TR:AAG04897 (EMBL:AE004579) (86 aa) fasta scores: E(): 9.6e-07%2C 39.5%25 id in 76 aa%2C and to Vibrio cholerae hypothetical protein VCA0105 TR:Q9KN60 (EMBL:AE004353) (94 aa) fasta scores: E(): 1%2C 28.4%25 id in 95 aa. Alternative translational start at codon 14;gbkey=CDS;inference=similar to sequence:INSDC:AE004579;product=conserved hypothetical protein;protein_id=CAL19535.1;transl_table=11
AL590842.1	EMBL	gene	953638	954417	.	-	.	ID=gene864;Name=YPO0867;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0867
AL590842.1	EMBL	CDS	953638	954417	.	-	0	ID=cds845;Parent=gene864;Dbxref=UniProtKB/TrEMBL:Q7CGU8,NCBI_GP:CAL19536.1;Name=CAL19536.1;Note=No significant database matches to the full length CDS. N-terminus similar to N-terminus of Aquifex aeolicus possible NADH dehydrogenase I chain M NUOM2 TR:O67390 (EMBL:AE000737) (501 aa) fasta scores: E(): 0.051%2C 23.8%25 id in 168 aa. Internal region of CDS is similar to internal region of Ureaplasma urealyticum hypothetical membrane lipoprotein UU384 TR:Q9PQA6 (EMBL:AE002136) (365 aa) fasta scores: E(): 0.37%2C 22.2%25 id in 203 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE002136;product=putative membrane protein;protein_id=CAL19536.1;transl_table=11
AL590842.1	EMBL	sequence_feature	953887	953952	.	-	.	ID=id2031;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	953974	954039	.	-	.	ID=id2032;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	954124	954189	.	-	.	ID=id2033;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	954211	954276	.	-	.	ID=id2034;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	954337	954402	.	-	.	ID=id2035;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	954498	954710	.	-	.	ID=gene865;Name=YPO0868;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0868
AL590842.1	EMBL	CDS	954498	954710	.	-	0	ID=cds846;Parent=gene865;Dbxref=UniProtKB/TrEMBL:Q0WIH0,NCBI_GP:CAL19537.1;Name=CAL19537.1;Note=No significant database matches;gbkey=CDS;product=putative membrane protein;protein_id=CAL19537.1;transl_table=11
AL590842.1	EMBL	sequence_feature	954624	954689	.	-	.	ID=id2036;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	955022	955738	.	-	.	ID=gene866;Name=YPO0869;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0869
AL590842.1	EMBL	CDS	955022	955738	.	-	0	ID=cds847;Parent=gene866;Dbxref=InterPro:IPR021488,UniProtKB/TrEMBL:Q0WIG9,NCBI_GP:CAL19538.1;Name=CAL19538.1;Note=No significant database hits to the full length CDS. Weakly similar to an internal region of Burkholderia pseudomallei hypothetical protein TR:Q9ZF74 (EMBL:AF110185) (541 aa) fasta scores: E(): 0.85%2C 29.2%25 id in 185 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF110185;product=hypothetical protein;protein_id=CAL19538.1;transl_table=11
AL590842.1	EMBL	gene	955759	958083	.	-	.	ID=gene867;Name=YPO0870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0870
AL590842.1	EMBL	CDS	955759	958083	.	-	0	ID=cds848;Parent=gene867;Dbxref=UniProtKB/TrEMBL:Q7CGU7,NCBI_GP:CAL19539.1;Name=CAL19539.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA5441 TR:AAG08826 (EMBL:AE004957) (733 aa) fasta scores: E(): 0%2C 33.9%25 id in 749 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004957;product=conserved hypothetical protein;protein_id=CAL19539.1;transl_table=11
AL590842.1	EMBL	gene	958328	958612	.	-	.	ID=gene868;Name=YPO0871;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0871
AL590842.1	EMBL	CDS	958328	958612	.	-	0	ID=cds849;Parent=gene868;Dbxref=GOA:Q74QB8,InterPro:IPR015287,UniProtKB/TrEMBL:Q74QB8,NCBI_GP:CAL19540.1;Name=CAL19540.1;Note=Similar to Escherichia coli colicin D-157 immunity protein Cdi TR:O52990 (EMBL:Y10412) (87 aa) fasta scores: E(): 0.0034%2C 27.9%25 id in 86 aa. C-terminus is identical to YPO3653 (100.0%25 identity in 39 aa overlap).;gbkey=CDS;inference=similar to sequence:INSDC:Y10412;product=putative colicin immunity protein;protein_id=CAL19540.1;transl_table=11
AL590842.1	EMBL	gene	958659	958916	.	-	.	ID=gene869;Name=YPO0872;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0872
AL590842.1	EMBL	CDS	958659	958916	.	-	0	ID=cds850;Parent=gene869;Dbxref=UniProtKB/TrEMBL:Q74QB7,NCBI_GP:CAL19541.1;Name=CAL19541.1;Note=No significant database hits to the full length CDS. Weakly similar to the C-terminus of Bacillus subtilis hypothetical protein YxzC TR:O32286 (EMBL:Z99124) (122 aa) fasta scores: E(): 0.00019%2C 29.7%25 id in 74 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z99124;product=hypothetical protein;protein_id=CAL19541.1;transl_table=11
AL590842.1	EMBL	gene	959426	960964	.	-	.	ID=gene870;Name=YPO0873;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0873
AL590842.1	EMBL	CDS	959426	960964	.	-	0	ID=cds851;Parent=gene870;Dbxref=GOA:Q7CGU6,InterPro:IPR008727,InterPro:IPR016128,UniProtKB/TrEMBL:Q7CGU6,NCBI_GP:CAL19542.1;Name=CAL19542.1;Note=Weakly similar to internal regions of Pseudomonas aeruginosa pyocin (killer protein) S1 SW:PYS1_PSEAE (Q06583) (617 aa) fasta scores: E(): 0.32%2C 24.6%25 id in 403 aa. Similar to the N-terminus of YPO1484 (62.1%25 identity in 124 aa overlap).;gbkey=CDS;product=hypothetical protein;protein_id=CAL19542.1;transl_table=11
AL590842.1	EMBL	gene	961468	962610	.	-	.	ID=gene871;Name=YPO0874;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0874
AL590842.1	EMBL	CDS	961468	962610	.	-	0	ID=cds852;Parent=gene871;Dbxref=InterPro:IPR003812,UniProtKB/TrEMBL:Q7CGU5,NCBI_GP:CAL19543.1;Name=CAL19543.1;Note=Weakly similar to Halobacterium sp (strain NRC-1) hypothetical protein TR:AAG20974 (EMBL:AE005164) (424 aa) fasta scores: E(): 5.2e-07%2C 26.0%25 id in 362 aa%2C and to Neisseria meningitidis hypothetical protein NMB1759 TR:Q9JY39 (EMBL:AE002525) (454 aa) fasta scores: E(): 3.7e-05%2C 24.5%25 id in 330 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE005164;product=hypothetical protein;protein_id=CAL19543.1;transl_table=11
AL590842.1	EMBL	gene	962879	963244	.	+	.	ID=gene872;Name=YPO0875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0875
AL590842.1	EMBL	CDS	962879	963244	.	+	0	ID=cds853;Parent=gene872;Dbxref=UniProtKB/TrEMBL:Q0WIG3,NCBI_GP:CAL19544.1;Name=CAL19544.1;Note=doubtful CDS with no significant database hits to the full length CDS. Similarity to internal region of to Arabidopsis thaliana cytochrome P450 TR:Q9LTM6 (EMBL:AB024038) (502 aa) fasta scores: E(): 5.1%2C 27.3%25 id in 128 aa;gbkey=CDS;inference=similar to sequence:INSDC:AB024038;product=hypothetical protein;protein_id=CAL19544.1;transl_table=11
AL590842.1	EMBL	gene	963257	963493	.	+	.	ID=gene873;Name=YPO0876;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0876
AL590842.1	EMBL	CDS	963257	963493	.	+	0	ID=cds854;Parent=gene873;Dbxref=UniProtKB/TrEMBL:Q7CGU4,NCBI_GP:CAL19545.1;Name=CAL19545.1;Note=doubtful CDS with no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19545.1;transl_table=11
AL590842.1	EMBL	gene	963499	963831	.	+	.	ID=gene874;Name=YPO0877;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0877
AL590842.1	EMBL	CDS	963499	963831	.	+	0	ID=cds855;Parent=gene874;Dbxref=UniProtKB/TrEMBL:Q7CGU3,NCBI_GP:CAL19546.1;Name=CAL19546.1;Note=doubtful CDS with no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19546.1;transl_table=11
AL590842.1	EMBL	gene	964013	964213	.	+	.	ID=gene875;Name=YPO0878;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0878
AL590842.1	EMBL	CDS	964013	964213	.	+	0	ID=cds856;Parent=gene875;Dbxref=InterPro:IPR009061,InterPro:IPR010260,UniProtKB/TrEMBL:Q7CGU2,NCBI_GP:CAL19547.1;Name=CAL19547.1;Note=Similar to Escherichia coli prophage CP4-57 regulatory protein AlpA SW:ALPA_ECOLI (P33997) (70 aa) fasta scores: E(): 0.0042%2C 29.3%25 id in 58 aa%2C and to Vibrio cholerae putative transcriptional regulator VC1809 TR:Q9KR38 (EMBL:AE004257) (76 aa) fasta scores: E(): 3.6e-09%2C 49.1%25 id in 57 aa%2C and to Yersinia pestis hypothetical protein TR:Q9ZFZ8 (EMBL:AF091251) (93 aa) fasta scores: E(): 4.1e-06%2C 39.0%25 id in 59 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF091251;product=putative regulatory protein;protein_id=CAL19547.1;transl_table=11
AL590842.1	EMBL	sequence_feature	964031	964096	.	+	.	ID=id2037;Note=Predicted helix-turn-helix motif with score 1306 (+3.64 SD) at aa 7-28%2C sequence IRLPEVLKRTGFSRPWVYKLLK;gbkey=misc_feature
AL590842.1	EMBL	gene	964372	964698	.	-	.	ID=gene876;Name=YPO0879;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0879
AL590842.1	EMBL	CDS	964372	964698	.	-	0	ID=cds857;Parent=gene876;Dbxref=InterPro:IPR009241,UniProtKB/TrEMBL:Q0WIF9,NCBI_GP:CAL19548.1;Name=CAL19548.1;Note=Weakly similar to Salmonella typhimurium LT2 hypothetical protein STMD1.84 TR:Q9L6S7 (EMBL:AF233324) (105 aa) fasta scores: E(): 6.6%2C 23.4%25 id in 94 aa%2C and to Bacteriophage N15 protein GP49 TR:O64357 (EMBL:AF064539) (103 aa) fasta scores: E(): 9.2%2C 24.7%25 id in 93 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF233324;product=hypothetical protein;protein_id=CAL19548.1;transl_table=11
AL590842.1	EMBL	gene	964998	967289	.	+	.	ID=gene877;Name=YPO0880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0880
AL590842.1	EMBL	CDS	964998	967289	.	+	0	ID=cds858;Parent=gene877;Dbxref=GOA:Q74QA8,InterPro:IPR002694,InterPro:IPR004968,InterPro:IPR006171,InterPro:IPR011991,InterPro:IPR013237,InterPro:IPR014015,InterPro:IPR014818,InterPro:IPR027417,UniProtKB/TrEMBL:Q74QA8,NCBI_GP:CAL19549.1;Name=CAL19549.1;Note=N-terminus similar to C-terminus of Escherichia coli DNA primase TraC SW:TRC4_ECOLI (P27189) (1061 aa) fasta scores: E(): 2.8e-08%2C 30.0%25 id in 293 aa. Full length CDS similar to Bacteriophage P4 putative P4-specific DNA primase SW:PRIM_BPP4 (P10277) (777 aa) fasta scores: E(): 0%2C 40.5%25 id in 790 aa;gbkey=CDS;product=putative primase;protein_id=CAL19549.1;transl_table=11
AL590842.1	EMBL	sequence_feature	966441	966464	.	+	.	ID=id2038;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	967689	968087	.	-	.	ID=gene878;Name=YPO0881;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0881
AL590842.1	EMBL	CDS	967689	968087	.	-	0	ID=cds859;Parent=gene878;Dbxref=GOA:Q7CGU1,InterPro:IPR001387,InterPro:IPR010982,InterPro:IPR022452,InterPro:IPR022453,UniProtKB/TrEMBL:Q7CGU1,NCBI_GP:CAL19550.1;Name=CAL19550.1;Note=Similar to Escherichia coli hypothetical protein YgiT SW:YGIT_ECOLI (Q46864) (131 aa) fasta scores: E(): 1.3e-31%2C 60.3%25 id in 131 aa%2C and to Alcaligenes eutrophus hypothetical protein TR:Q9ZAL4 (EMBL:Y10831) (133 aa) fasta scores: E(): 1.1e-28%2C 55.0%25 id in 131 aa;gbkey=CDS;inference=similar to sequence:INSDC:Y10831;product=conserved hypothetical protein;protein_id=CAL19550.1;transl_table=11
AL590842.1	EMBL	sequence_feature	967704	967865	.	-	.	ID=id2039;Note=Pfam match to entry PF01381 HTH_3%2C Helix-turn-helix%2Cscore 37.10%2C E-value 4e-07;gbkey=misc_feature;inference=protein motif:PF01381
AL590842.1	EMBL	sequence_feature	967773	967838	.	-	.	ID=id2040;Note=Predicted helix-turn-helix motif with score 1346 (+3.77 SD) at aa 84-105%2C sequence LNQREASEIFGGGVNAFSRYEK;gbkey=misc_feature
AL590842.1	EMBL	gene	968087	968383	.	-	.	ID=gene879;Name=YPO0882;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0882
AL590842.1	EMBL	CDS	968087	968383	.	-	0	ID=cds860;Parent=gene879;Dbxref=UniProtKB/TrEMBL:Q74QA6,NCBI_GP:CAL19551.1;Name=CAL19551.1;Note=Similar to Escherichia coli hypothetical protein YgiU SW:YGIU_ECOLI (Q46865) (98 aa) fasta scores: E(): 1.4e-24%2C 67.0%25 id in 97 aa%2C and to Alcaligenes eutrophus hypothetical protein TR:Q9ZAL5 (EMBL:Y10831) (98 aa) fasta scores: E(): 3.5e-21%2C 57.1%25 id in 98 aa;gbkey=CDS;inference=similar to sequence:INSDC:Y10831;product=conserved hypothetical protein;protein_id=CAL19551.1;transl_table=11
AL590842.1	EMBL	gene	968547	968909	.	-	.	ID=gene880;Name=YPO0883;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0883
AL590842.1	EMBL	CDS	968547	968909	.	-	0	ID=cds861;Parent=gene880;Dbxref=GOA:Q74QA5,InterPro:IPR001387,InterPro:IPR010982,UniProtKB/TrEMBL:Q74QA5,NCBI_GP:CAL19552.1;Name=CAL19552.1;Note=Similar to Xylella fastidiosa hypothetical protein XF0534 TR:Q9PFX2 (EMBL:AE003901) (114 aa) fasta scores: E(): 0.0049%2C 30.5%25 id in 118 aa. Similar to YPO4028 (97.5%25 identity in 120 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AE003901;product=putative DNA binding protein;protein_id=CAL19552.1;transl_table=11
AL590842.1	EMBL	sequence_feature	968556	968720	.	-	.	ID=id2041;Note=Pfam match to entry PF01381 HTH_3%2C Helix-turn-helix%2Cscore 31.60%2C E-value 1.8e-05;gbkey=misc_feature;inference=protein motif:PF01381
AL590842.1	EMBL	sequence_feature	968628	968693	.	-	.	ID=id2042;Note=Predicted helix-turn-helix motif with score 2582 (+7.98 SD) at aa 73-94%2C sequence FSQYEIAELLGTTQSAVSQWEA;gbkey=misc_feature
AL590842.1	EMBL	gene	968972	969232	.	-	.	ID=gene881;Name=YPO0884;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0884
AL590842.1	EMBL	CDS	968972	969232	.	-	0	ID=cds862;Parent=gene881;Dbxref=InterPro:IPR007712,UniProtKB/TrEMBL:Q74QA4,NCBI_GP:CAL19553.1;Name=CAL19553.1;Note=Weakly similar to Methanococcus jannaschii hypothetical protein MJ0071 SW:Y071_METJA (Q60374) (90 aa) fasta scores: E(): 0.022%2C 28.9%25 id in 83 aa%2C and to Escherichia coli hypothetical protein RelE SW:RELE_ECOLI (P07008) (95 aa) fasta scores: E(): 0.13%2C 22.4%25 id in 85 aa;gbkey=CDS;product=hypothetical protein;protein_id=CAL19553.1;transl_table=11
AL590842.1	EMBL	sequence_feature	968975	969229	.	-	.	ID=id2043;Note=Pfam match to entry PF01919 DUF79%2C Protein of unknown function DUF79%2C score 17.80%2C E-value 8.4e-05;gbkey=misc_feature;inference=protein motif:PF01919
AL590842.1	EMBL	gene	969475	969669	.	+	.	ID=gene882;Name=YPO0886;end_range=969669,.;gbkey=Gene;gene_biotype=other;locus_tag=YPO0886;partial=true;start_range=.,969475
AL590842.1	EMBL	mRNA	969475	969669	.	+	.	ID=rna12;Parent=gene882;Note=Probable gene remnant%2C similar to Shigella flexneri insertion sequence IS911 protein TR:Q54158 (EMBL:Z23100) (119 aa) fasta scores: E(): 0.0067%2C 43.5%25 id in 62 aa%2C and to Shigella flexneri insertion sequence IS2 protein TR:Q54157 (EMBL:Z23101) (179 aa) fasta scores: E(): 0.0096%2C36.1%25 id in 72 aa%3B~was marked partial;end_range=969669,.;gbkey=mRNA;inference=similar to sequence:INSDC:Z23101;partial=true;product=insertion sequence protein (partial);start_range=.,969475
AL590842.1	EMBL	exon	969475	969669	.	+	.	ID=id2044;Parent=rna12;Note=Probable gene remnant%2C similar to Shigella flexneri insertion sequence IS911 protein TR:Q54158 (EMBL:Z23100) (119 aa) fasta scores: E(): 0.0067%2C 43.5%25 id in 62 aa%2C and to Shigella flexneri insertion sequence IS2 protein TR:Q54157 (EMBL:Z23101) (179 aa) fasta scores: E(): 0.0096%2C36.1%25 id in 72 aa%3B~was marked partial;end_range=969669,.;gbkey=mRNA;inference=similar to sequence:INSDC:Z23101;partial=true;product=insertion sequence protein (partial);start_range=.,969475
AL590842.1	EMBL	gene	970097	971311	.	-	.	ID=gene883;Name=int;gbkey=Gene;gene=int;gene_biotype=protein_coding;locus_tag=YPO0887
AL590842.1	EMBL	CDS	970097	971311	.	-	0	ID=cds863;Parent=gene883;Dbxref=GOA:Q7CGU0,InterPro:IPR002104,InterPro:IPR004107,InterPro:IPR011010,InterPro:IPR013762,InterPro:IPR023109,InterPro:IPR025166,UniProtKB/TrEMBL:Q7CGU0,NCBI_GP:CAL19554.1;Name=CAL19554.1;Note=Similar to Shigella flexneri P4-like integrase Int TR:Q9XCI7 (EMBL:AF141323) (394 aa) fasta scores: E(): 0%2C65.2%25 id in 394 aa%2C and to Escherichia coli CP4-like integrase Int TR:O85610 (EMBL:AF071034) (393 aa) fasta scores: E(): 0%2C 65.6%25 id in 389 aa. Similar to YPO4033 (62.4%25 identity in 386 aa overlap).;gbkey=CDS;gene=int;inference=similar to sequence:INSDC:AF141323;product=integrase;protein_id=CAL19554.1;transl_table=11
AL590842.1	EMBL	sequence_feature	970184	970711	.	-	.	ID=id2045;Note=Pfam match to entry PF00589 Phage_integrase%2C Phage integrase family%2C score 119.50%2C E-value 6.5e-32;gbkey=misc_feature;gene=int;inference=protein motif:PF00589
AL590842.1	EMBL	tRNA	971477	971550	.	-	.	ID=rna13;Note=tRNA Gly anticodon CCC%2C Cove score 78.87;gbkey=tRNA;product=tRNA-Gly
AL590842.1	EMBL	exon	971477	971550	.	-	.	ID=id2046;Parent=rna13;Note=tRNA Gly anticodon CCC%2C Cove score 78.87;gbkey=tRNA;product=tRNA-Gly
AL590842.1	EMBL	gene	971744	973261	.	-	.	ID=gene884;Name=asuD;gbkey=Gene;gene=asuD;gene_biotype=protein_coding;gene_synonym=herC,lysS;locus_tag=YPO0888
AL590842.1	EMBL	CDS	971744	973261	.	-	0	ID=cds864;Parent=gene884;Dbxref=GOA:Q8ZHK5,InterPro:IPR002313,InterPro:IPR004364,InterPro:IPR004365,InterPro:IPR006195,InterPro:IPR012340,InterPro:IPR018149,InterPro:IPR018150,NCBI_GP:CAL19555.1;Name=CAL19555.1;Note=Similar to Escherichia coli lysyl-tRNA synthetase LysS SW:SYK1_ECOLI (P13030) (504 aa) fasta scores: E(): 0%2C85.9%25 id in 504 aa%2C and to Haemophilus influenzae lysyl-tRNA synthetase LysS SW:SYK_HAEIN (P43825) (502 aa) fasta scores: E(): 0%2C 68.5%25 id in 504 aa;gbkey=CDS;gene=asuD;product=lysyl-tRNA synthetase;protein_id=CAL19555.1;transl_table=11
AL590842.1	EMBL	sequence_feature	971753	972778	.	-	.	ID=id2047;Note=Pfam match to entry PF00152 tRNA-synt_2%2C tRNA synthetases class II (D%2C K and N)%2C score 661.80%2C E-value 3.6e-195;gbkey=misc_feature;gene=asuD;inference=protein motif:PF00152
AL590842.1	EMBL	sequence_feature	971807	971836	.	-	.	ID=id2048;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.;gbkey=misc_feature;gene=asuD;inference=protein motif:ProSite:PS00339
AL590842.1	EMBL	sequence_feature	972425	972478	.	-	.	ID=id2049;Note=PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.;gbkey=misc_feature;gene=asuD;inference=protein motif:ProSite:PS00179
AL590842.1	EMBL	sequence_feature	972824	973060	.	-	.	ID=id2050;Note=Pfam match to entry PF01336 tRNA_anti%2C tRNA synthetase anti-codon binding domain%2C score 90.00%2C E-value 4.9e-23;gbkey=misc_feature;gene=asuD;inference=protein motif:PF01336
AL590842.1	EMBL	gene	973271	974369	.	-	.	ID=gene885;Name=prfB;gbkey=Gene;gene=prfB;gene_biotype=protein_coding;gene_synonym=supK;locus_tag=YPO0889
AL590842.1	EMBL	CDS	974293	974369	.	-	0	ID=cds865;Parent=gene885;Dbxref=GOA:Q8ZHK4,InterPro:IPR000352,InterPro:IPR004374,InterPro:IPR005139,InterPro:IPR014720,InterPro:IPR020853,NCBI_GP:CAL19556.1;Name=CAL19556.1;Note=Similar to Escherichia coli peptide chain release factor 2 PrfB SW:RF2_ECOLI (P07012) (365 aa) fasta scores: E(): 0%2C 88.8%25 id in 365 aa%2C and to Salmonella typhimurium peptide chain release factor 2 PrfB SW:RF2_SALTY (P28353) (365 aa) fasta scores: E(): 0%2C 89.0%25 id in 365 aa. Contains an in-frame premature opal (UGA) termination codon (codon 26) followed by a frameshift. Orthologues also contain nonsense mutation and frameshift. Autogenous suppression of the nonsense mutation. Full length E. coli and S. typhimurium orthologues have been shown to translated via a frameshift mechanism.;gbkey=CDS;gene=prfB;product=peptide chain release factor 2;protein_id=CAL19556.1;transl_table=11
AL590842.1	EMBL	CDS	973271	974294	.	-	1	ID=cds865;Parent=gene885;Dbxref=GOA:Q8ZHK4,InterPro:IPR000352,InterPro:IPR004374,InterPro:IPR005139,InterPro:IPR014720,InterPro:IPR020853,NCBI_GP:CAL19556.1;Name=CAL19556.1;Note=Similar to Escherichia coli peptide chain release factor 2 PrfB SW:RF2_ECOLI (P07012) (365 aa) fasta scores: E(): 0%2C 88.8%25 id in 365 aa%2C and to Salmonella typhimurium peptide chain release factor 2 PrfB SW:RF2_SALTY (P28353) (365 aa) fasta scores: E(): 0%2C 89.0%25 id in 365 aa. Contains an in-frame premature opal (UGA) termination codon (codon 26) followed by a frameshift. Orthologues also contain nonsense mutation and frameshift. Autogenous suppression of the nonsense mutation. Full length E. coli and S. typhimurium orthologues have been shown to translated via a frameshift mechanism.;gbkey=CDS;gene=prfB;product=peptide chain release factor 2;protein_id=CAL19556.1;transl_table=11
AL590842.1	EMBL	sequence_feature	973358	973696	.	-	.	ID=id2051;Note=Pfam match to entry PF00472 RF-1%2C Peptidyl-tRNA hydrolase domain%2C score 238.80%2C E-value 7.7e-68;gbkey=misc_feature;gene=prfB;inference=protein motif:PF00472
AL590842.1	EMBL	sequence_feature	973586	973636	.	-	.	ID=id2052;Note=PS00745 Prokaryotic-type class I peptide chain release factors signature.;gbkey=misc_feature;gene=prfB;inference=protein motif:ProSite:PS00745
AL590842.1	EMBL	gene	974548	976281	.	-	.	ID=gene886;Name=recJ;gbkey=Gene;gene=recJ;gene_biotype=protein_coding;locus_tag=YPO0890
AL590842.1	EMBL	CDS	974548	976281	.	-	0	ID=cds866;Parent=gene886;Dbxref=GOA:Q7CGT9,InterPro:IPR001667,InterPro:IPR003156,InterPro:IPR004610,UniProtKB/TrEMBL:Q7CGT9,NCBI_GP:CAL19557.1;Name=CAL19557.1;Note=Similar to Escherichia coli single-stranded-DNA-specific exonuclease RecJ SW:RECJ_ECOLI (P21893) (577 aa) fasta scores: E(): 0%2C 75.4%25 id in 573 aa%2Cand to Erwinia chrysanthemi single-stranded-DNA-specific exonuclease RecJ SW:RECJ_ERWCH (P39693) (575 aa) fasta scores: E(): 0%2C 79.0%25 id in 572 aa;gbkey=CDS;gene=recJ;product=single-stranded-DNA-specific exonuclease;protein_id=CAL19557.1;transl_table=11
AL590842.1	EMBL	sequence_feature	974929	975138	.	-	.	ID=id2053;Note=Pfam match to entry PF02272 DHHA1%2C DHHA1 domain%2Cscore 58.40%2C E-value 1.6e-13;gbkey=misc_feature;gene=recJ;inference=protein motif:PF02272
AL590842.1	EMBL	sequence_feature	975565	976083	.	-	.	ID=id2054;Note=Pfam match to entry PF01368 DHH%2C DHH family%2C score 210.80%2C E-value 2.1e-59;gbkey=misc_feature;gene=recJ;inference=protein motif:PF01368
AL590842.1	EMBL	gene	976288	977004	.	-	.	ID=gene887;Name=dsbC;gbkey=Gene;gene=dsbC;gene_biotype=protein_coding;locus_tag=YPO0891
AL590842.1	EMBL	CDS	976288	977004	.	-	0	ID=cds867;Parent=gene887;Dbxref=GOA:Q7CGT8,InterPro:IPR009094,InterPro:IPR012336,InterPro:IPR017937,InterPro:IPR018950,PDB:4NPB,UniProtKB/TrEMBL:Q7CGT8,NCBI_GP:CAL19558.1;Name=CAL19558.1;Note=Similar to Erwinia chrysanthemi thiol:disulfide interchange protein DsbC SW:DSBC_ERWCH (P39691) (238 aa) fasta scores: E(): 0%2C 73.1%25 id in 238 aa%2C and to Escherichia coli thiol:disulfide interchange protein dsbc precursor DsbC SW:DSBC_ECOLI (P21892) (236 aa) fasta scores: E(): 0%2C 68.0%25 id in 231 aa;gbkey=CDS;gene=dsbC;product=thiol:disulfide interchange protein (DsbC);protein_id=CAL19558.1;transl_table=11
AL590842.1	EMBL	sequence_feature	976618	976674	.	-	.	ID=id2055;Note=PS00194 Thioredoxin family active site.;gbkey=misc_feature;gene=dsbC;inference=protein motif:ProSite:PS00194
AL590842.1	EMBL	gene	977035	977934	.	-	.	ID=gene888;Name=xerD;gbkey=Gene;gene=xerD;gene_biotype=protein_coding;locus_tag=YPO0892
AL590842.1	EMBL	CDS	977035	977934	.	-	0	ID=cds868;Parent=gene888;Dbxref=GOA:Q8ZHK1,InterPro:IPR002104,InterPro:IPR004107,InterPro:IPR010998,InterPro:IPR011010,InterPro:IPR011932,InterPro:IPR013762,InterPro:IPR023009,InterPro:IPR023109,NCBI_GP:CAL19559.1;Name=CAL19559.1;Note=Similar to Escherichia coli integrase/recombinase XerD SW:XERD_ECOLI (P21891) (298 aa) fasta scores: E(): 0%2C83.5%25 id in 297 aa%2C and to Salmonella typhimurium integrase/recombinase XerD SW:XERD_SALTY (P55889) (298 aa) fasta scores: E(): 0%2C 82.8%25 id in 297 aa. Belongs to the phage integrase family.;gbkey=CDS;gene=xerD;product=integrase/recombinase;protein_id=CAL19559.1;transl_table=11
AL590842.1	EMBL	sequence_feature	977065	977613	.	-	.	ID=id2056;Note=Pfam match to entry PF00589 Phage_integrase%2C Phage integrase family%2C score 255.00%2C E-value 1e-72;gbkey=misc_feature;gene=xerD;inference=protein motif:PF00589
AL590842.1	EMBL	gene	978041	978559	.	+	.	ID=gene889;Name=fldB;gbkey=Gene;gene=fldB;gene_biotype=protein_coding;locus_tag=YPO0893
AL590842.1	EMBL	CDS	978041	978559	.	+	0	ID=cds869;Parent=gene889;Dbxref=GOA:Q0WIE7,InterPro:IPR001226,InterPro:IPR008254,InterPro:IPR010086,InterPro:IPR029039,UniProtKB/TrEMBL:Q0WIE7,NCBI_GP:CAL19560.1;Name=CAL19560.1;Note=Similar to Escherichia coli flavodoxin 2 FldB SW:FLAW_ECOLI (P41050) (173 aa) fasta scores: E(): 0%2C 75.0%25 id in 168 aa%2C and to Vibrio cholerae flavodoxin 2 VC2420 TR:Q9KPE8 (EMBL:AE004311) (198 aa) fasta scores: E(): 0%2C61.7%25 id in 167 aa;gbkey=CDS;gene=fldB;inference=similar to sequence:INSDC:AE004311;product=flavodoxin 2;protein_id=CAL19560.1;transl_table=11
AL590842.1	EMBL	sequence_feature	978044	978520	.	+	.	ID=id2057;Note=Pfam match to entry PF00258 flavodoxin%2C Flavodoxins%2Cscore 264.00%2C E-value 2e-75;gbkey=misc_feature;gene=fldB;inference=protein motif:PF00258
AL590842.1	EMBL	sequence_feature	978053	978103	.	+	.	ID=id2058;Note=PS00201 Flavodoxin signature.;gbkey=misc_feature;gene=fldB;inference=protein motif:ProSite:PS00201
AL590842.1	EMBL	gene	978649	980127	.	-	.	ID=gene890;Name=creD;gbkey=Gene;gene=creD;gene_biotype=protein_coding;locus_tag=YPO0894
AL590842.1	EMBL	CDS	978649	980127	.	-	0	ID=cds870;Parent=gene890;Dbxref=InterPro:IPR010364,UniProtKB/TrEMBL:Q74Q99,NCBI_GP:CAL19561.1;Name=CAL19561.1;Note=Similar to Escherichia coli inner membrane protein CreD SW:CRED_ECOLI (P08369) (450 aa) fasta scores: E(): 0%2C47.1%25 id in 429 aa%2C and to Aeromonas hydrophila putative inner membrane protein BlrD TR:Q9KGR5 (EMBL:AJ276632) (449 aa) fasta scores: E(): 0%2C 46.9%25 id in 452 aa;gbkey=CDS;gene=creD;inference=similar to sequence:INSDC:AJ276632;product=putative membrane protein;protein_id=CAL19561.1;transl_table=11
AL590842.1	EMBL	sequence_feature	978844	978900	.	-	.	ID=id2059;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=creD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	978916	978981	.	-	.	ID=id2060;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=creD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	978997	979062	.	-	.	ID=id2061;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=creD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	979075	979125	.	-	.	ID=id2062;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=creD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	979147	979209	.	-	.	ID=id2063;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=creD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	980041	980091	.	-	.	ID=id2064;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=creD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	980227	981645	.	-	.	ID=gene891;Name=creC;gbkey=Gene;gene=creC;gene_biotype=protein_coding;gene_synonym=phoM,sasS;locus_tag=YPO0895
AL590842.1	EMBL	CDS	980227	981645	.	-	0	ID=cds871;Parent=gene891;Dbxref=GOA:Q7CGT7,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR029151,UniProtKB/TrEMBL:Q7CGT7,NCBI_GP:CAL19562.1;Name=CAL19562.1;Note=Similar to Myxococcus xanthus developmental histidine kinase sensor SasS TR:O52223 (EMBL:AF029787) (497 aa) fasta scores: E(): 1.4e-23%2C 28.2%25 id in 485 aa%2C and to Escherichia coli sensor protein CreC SW:CREC_ECOLI (P08401) (474 aa) fasta scores: E(): 0%2C 58.3%25 id in 470 aa. Probable sensor kinase protein of two-component regulatory system;gbkey=CDS;gene=creC;inference=similar to sequence:INSDC:AF029787;product=putative histidine kinase sensor;protein_id=CAL19562.1;transl_table=11
AL590842.1	EMBL	sequence_feature	980233	980853	.	-	.	ID=id2065;Note=Pfam match to entry PF00512 signal%2C Histidine kinase%2C score 202.80%2C E-value 5.2e-57;gbkey=misc_feature;gene=creC;inference=protein motif:PF00512
AL590842.1	EMBL	sequence_feature	980890	981096	.	-	.	ID=id2066;Note=Pfam match to entry PF00672 DUF5%2C HAMP domain%2C score 45.20%2C E-value 1.4e-09;gbkey=misc_feature;gene=creC;inference=protein motif:PF00672
AL590842.1	EMBL	sequence_feature	981028	981093	.	-	.	ID=id2067;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=creC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	981565	981630	.	-	.	ID=id2068;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=creC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	981670	982371	.	-	.	ID=gene892;Name=blrA;gbkey=Gene;gene=blrA;gene_biotype=protein_coding;gene_synonym=creB;locus_tag=YPO0896
AL590842.1	EMBL	CDS	981670	982371	.	-	0	ID=cds872;Parent=gene892;Dbxref=GOA:Q7CGT6,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:Q7CGT6,NCBI_GP:CAL19563.1;Name=CAL19563.1;Note=Similar to Aeromonas jandaei beta-lactamase production response regulator protein BlrA TR:P97015 (EMBL:U67069) (223 aa) fasta scores: E(): 0%2C 60.3%25 id in 229 aa%2C and to Escherichia coli transcriptional regulatory protein CreB SW:CREB_ECOLI (P08368) (229 aa) fasta scores: E(): 0%2C 59.4%25 id in 229 aa. Probable response regulator protein of two-component regulatory system;gbkey=CDS;gene=blrA;inference=similar to sequence:INSDC:U67069;product=putative response regulator;protein_id=CAL19563.1;transl_table=11
AL590842.1	EMBL	sequence_feature	981694	981912	.	-	.	ID=id2069;Note=Pfam match to entry PF00486 trans_reg_C%2CTranscriptional regulatory protein%2C C terminal%2C score 96.50%2C E-value 1.5e-27;gbkey=misc_feature;gene=blrA;inference=protein motif:PF00486
AL590842.1	EMBL	sequence_feature	982027	982362	.	-	.	ID=id2070;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 106.30%2C E-value 5.8e-28;gbkey=misc_feature;gene=blrA;inference=protein motif:PF00072
AL590842.1	EMBL	gene	982368	982793	.	-	.	ID=gene893;Name=YPO0896a;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0896a
AL590842.1	EMBL	CDS	982368	982793	.	-	0	ID=cds873;Parent=gene893;Dbxref=InterPro:IPR009883,UniProtKB/TrEMBL:Q7CGT5,NCBI_GP:CAL19564.1;Name=CAL19564.1;Note=Similar to Escherichia coli hypothetical protein YgfX SW:YGFX_ECOLI (Q46824) (135 aa) fasta scores: E(): 1.1e-28%2C 53.7%25 id in 123 aa%2C 53.7%25 id in 123 aa%2C and to enterohemorrhagic Escherichia coli O157:H7 hypothetical protein Z4234 TR:AAG58024 (EMBL:AE005520) (135 aa) fasta scores: E(): 3.9e-28%2C 52.8%25 id in 123 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE005520;product=conserved hypothetical protein;protein_id=CAL19564.1;transl_table=11
AL590842.1	EMBL	gene	982774	983040	.	-	.	ID=gene894;Name=YPO0897;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0897
AL590842.1	EMBL	CDS	982774	983040	.	-	0	ID=cds874;Parent=gene894;Dbxref=InterPro:IPR005631,NCBI_GP:CAL19565.1;Name=CAL19565.1;Note=Similar to Escherichia coli hypothetical protein YgfY SW:YGFY_ECOLI (Q46825) (88 aa) fasta scores: E(): 0%2C81.8%25 id in 88 aa%2C and to Vibrio cholerae hypothetical protein VC2471 TR:Q9KPA2 (EMBL:AE004316) (86 aa) fasta scores: E(): 3.1e-16%2C 53.8%25 id in 80 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004316;product=conserved hypothetical protein;protein_id=CAL19565.1;transl_table=11
AL590842.1	EMBL	gene	983357	984349	.	+	.	ID=gene895;Name=YPO0898;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0898
AL590842.1	EMBL	CDS	983357	984349	.	+	0	ID=cds875;Parent=gene895;Dbxref=GOA:Q7CGT3,InterPro:IPR006222,InterPro:IPR017703,InterPro:IPR023758,InterPro:IPR029043,NCBI_GP:CAL19566.1;Name=CAL19566.1;Note=Similar to Escherichia coli hypothetical protein YgfZ SW:UP14_ECOLI (P39179) (325 aa) fasta scores: E(): 0%2C68.2%25 id in 324 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) hypothetical protein BU435 TR:BAB13133 (EMBL:AP001119) (319 aa) fasta scores: E(): 0%2C 39.3%25 id in 295 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001119;product=conserved hypothetical protein;protein_id=CAL19566.1;transl_table=11
AL590842.1	EMBL	gene	984422	984919	.	-	.	ID=gene896;Name=YPO0899;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0899
AL590842.1	EMBL	CDS	984422	984919	.	-	0	ID=cds876;Parent=gene896;Dbxref=InterPro:IPR018681,UniProtKB/TrEMBL:Q0WIE0,NCBI_GP:CAL19567.1;Name=CAL19567.1;Note=Similar to Streptomyces coelicolor putative integral membrane protein SCD6.09C TR:Q9KZZ5 (EMBL:AL353815) (169 aa) fasta scores: E(): 3e-18%2C 40.6%25 id in 160 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL353815;product=putative membrane protein;protein_id=CAL19567.1;transl_table=11
AL590842.1	EMBL	sequence_feature	984449	984499	.	-	.	ID=id2071;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	984545	984610	.	-	.	ID=id2072;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	984650	984715	.	-	.	ID=id2073;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	984839	984904	.	-	.	ID=id2074;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	985177	985878	.	-	.	ID=gene897;Name=YPO0900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0900
AL590842.1	EMBL	CDS	985177	985878	.	-	0	ID=cds877;Parent=gene897;Dbxref=GOA:Q7CGT2,InterPro:IPR004254,InterPro:IPR005744,UniProtKB/TrEMBL:Q7CGT2,NCBI_GP:CAL19568.1;Name=CAL19568.1;Note=Similar to Bacillus cereus hemolysin III SW:HLY3_BACCE (P54176) (219 aa) fasta scores: E(): 6.7e-33%2C46.0%25 id in 202 aa%2C and to Escherichia coli hypothetical protein YqfA SW:YQFA_ECOLI (Q46827) (219 aa) fasta scores: E(): 0%2C 76.7%25 id in 206 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative hemolysin III;protein_id=CAL19568.1;transl_table=11
AL590842.1	EMBL	sequence_feature	985186	985251	.	-	.	ID=id2075;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	985267	985332	.	-	.	ID=id2076;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	985345	985410	.	-	.	ID=id2077;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	985426	985491	.	-	.	ID=id2078;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	985507	985563	.	-	.	ID=id2079;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	985603	985668	.	-	.	ID=id2080;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	985699	985764	.	-	.	ID=id2081;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	986080	987225	.	-	.	ID=gene898;Name=YPO0901;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0901
AL590842.1	EMBL	CDS	986080	987225	.	-	0	ID=cds878;Parent=gene898;Dbxref=UniProtKB/TrEMBL:Q74Q91,NCBI_GP:CAL19569.1;Name=CAL19569.1;Note=No significant database matches. Similar to YPO1686 (61.0%25 identity in 354 aa overlap).;gbkey=CDS;product=putative exported protein;protein_id=CAL19569.1;transl_table=11
AL590842.1	EMBL	gene	987287	989263	.	-	.	ID=gene899;Name=YPO0902;end_range=989263,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0902;partial=true
AL590842.1	EMBL	CDS	987287	989263	.	-	0	ID=cds879;Parent=gene899;Dbxref=GOA:Q0WID7,InterPro:IPR005594,InterPro:IPR008635,InterPro:IPR008640,InterPro:IPR011049,UniProtKB/TrEMBL:Q0WID7,NCBI_GP:CAL19570.1;Name=CAL19570.1;Note=Similar to C-terminal regions of Haemophilus influenzae adhesin Hia TR:Q48152 (EMBL:U38617) (1098 aa) fasta scores: E(): 3.6e-09%2C 23.0%25 id in 709 aa%2C and Xylella fastidiosa surface protein XF1981 TR:Q9PC04 (EMBL:AE004017) (1190 aa) fasta scores: E(): 0%2C 36.7%25 id in 671 aa. CDS is similar to the C-terminal regions of surface proteins and does not have an N-terminal signal sequence. Therefore it is unlikely to be exported and is a possible gene fragment. Upstream of the CDS is a region of ow GC%25 that is possibly laterally acquired DNA and may account for the truncation. The N- and C-terminal region of the CDS are similar to YPO1684 (53.0%25 identity in 658 aa overlap)%2C and the C-terminus of the CDS is similar YPO1685 (79.2%25 identity in 144 aa overlap).%3B~was marked partial;end_range=989263,.;gbkey=CDS;inference=similar to sequence:INSDC:U38617;partial=true;product=putative surface protein (partial);protein_id=CAL19570.1;transl_table=11
AL590842.1	EMBL	sequence_feature	989263	990406	.	+	.	ID=id2082;Note=DNA has a low GC content%2C 29.89%25%2C possible laterally acquired DNA.;gbkey=misc_feature
AL590842.1	EMBL	gene	990473	990910	.	-	.	ID=gene900;Name=YPO0904;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0904
AL590842.1	EMBL	CDS	990473	990910	.	-	0	ID=cds880;Parent=gene900;Dbxref=InterPro:IPR024311,UniProtKB/TrEMBL:Q7CGT1,NCBI_GP:CAL19571.1;Name=CAL19571.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19571.1;transl_table=11
AL590842.1	EMBL	gene	991288	994167	.	-	.	ID=gene901;Name=gcvP;gbkey=Gene;gene=gcvP;gene_biotype=protein_coding;locus_tag=YPO0905
AL590842.1	EMBL	CDS	991288	994167	.	-	0	ID=cds881;Parent=gene901;Dbxref=GOA:Q8ZHI8,InterPro:IPR003437,InterPro:IPR015421,InterPro:IPR015424,InterPro:IPR020580,InterPro:IPR020581,NCBI_GP:CAL19572.1;Name=CAL19572.1;Note=Similar to Escherichia coli glycine dehydrogenase (glycine-cleavage system P protein) GcvP SW:GCSP_ECOLI (P33195) (956 aa) fasta scores: E(): 0%2C 83.5%25 id in 958 aa%2Cand to Pseudomonas aeruginosa glycine cleavage system protein P1%2C GcvP1 TR:AAG08598 (EMBL:AE004934) (958 aa) fasta scores: E(): 0%2C 64.7%25 id in 958 aa;gbkey=CDS;gene=gcvP;inference=similar to sequence:INSDC:AE004934;product=glycine dehydrogenase;protein_id=CAL19572.1;transl_table=11
AL590842.1	EMBL	sequence_feature	992848	994122	.	-	.	ID=id2083;Note=Pfam match to entry PF02347 GDC-P%2C %2C score 866.90%2CE-value 6.2e-257;gbkey=misc_feature;gene=gcvP;inference=protein motif:PF02347
AL590842.1	EMBL	gene	994379	994765	.	-	.	ID=gene902;Name=gcsH;gbkey=Gene;gene=gcsH;gene_biotype=protein_coding;locus_tag=YPO0906
AL590842.1	EMBL	CDS	994379	994765	.	-	0	ID=cds882;Parent=gene902;Dbxref=GOA:Q8ZHI7,InterPro:IPR002930,InterPro:IPR003016,InterPro:IPR011053,InterPro:IPR017453,NCBI_GP:CAL19573.1;Name=CAL19573.1;Note=Similar to Escherichia coli glycine cleavage system H protein GcsH SW:GCSH_ECOLI (P23884) (128 aa) fasta scores: E(): 0%2C 75.6%25 id in 127 aa%2C and to Pseudomonas aeruginosa glycine cleavage system protein H1%2C GcvH1 TR:AAG08599 (EMBL:AE004934) (129 aa) fasta scores: E(): 1.1e-26%2C 55.1%25 id in 127 aa;gbkey=CDS;gene=gcsH;inference=similar to sequence:INSDC:AE004934;product=glycine cleavage system H protein;protein_id=CAL19573.1;transl_table=11
AL590842.1	EMBL	sequence_feature	994382	994759	.	-	.	ID=id2084;Note=Pfam match to entry PF01597 GCV_H%2C Glycine cleavage H-protein%2C score 218.90%2C E-value 7.3e-62;gbkey=misc_feature;gene=gcsH;inference=protein motif:PF01597
AL590842.1	EMBL	sequence_feature	994532	994621	.	-	.	ID=id2085;Note=PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.;gbkey=misc_feature;gene=gcsH;inference=protein motif:ProSite:PS00189
AL590842.1	EMBL	gene	994834	995931	.	-	.	ID=gene903;Name=gcvT;gbkey=Gene;gene=gcvT;gene_biotype=protein_coding;locus_tag=YPO0907
AL590842.1	EMBL	CDS	994834	995931	.	-	0	ID=cds883;Parent=gene903;Dbxref=GOA:Q8ZHI6,InterPro:IPR006222,InterPro:IPR006223,InterPro:IPR013977,InterPro:IPR022903,InterPro:IPR027266,InterPro:IPR028896,InterPro:IPR029043,NCBI_GP:CAL19574.1;Name=CAL19574.1;Note=Similar to Escherichia coli aminomethyltransferase GcsT SW:GCST_ECOLI (P27248) (363 aa) fasta scores: E(): 0%2C79.6%25 id in 362 aa%2C and to Pseudomonas aeruginosa glycine-cleavage system protein T1%2C GcvT1 TR:AAG08600 (EMBL:AE004934) (360 aa) fasta scores: E(): 0%2C 57.8%25 id in 365 aa;gbkey=CDS;gene=gcvT;inference=similar to sequence:INSDC:AE004934;product=aminomethyltransferase;protein_id=CAL19574.1;transl_table=11
AL590842.1	EMBL	sequence_feature	994855	995796	.	-	.	ID=id2086;Note=Pfam match to entry PF01571 GCV_T%2C Glycine cleavage T-protein (aminomethyl transferase)%2C score 517.90%2C E-value 7.2e-152;gbkey=misc_feature;gene=gcvT;inference=protein motif:PF01571
AL590842.1	EMBL	gene	996652	997872	.	-	.	ID=gene904;Name=visC;gbkey=Gene;gene=visC;gene_biotype=protein_coding;locus_tag=YPO0908
AL590842.1	EMBL	CDS	996652	997872	.	-	0	ID=cds884;Parent=gene904;Dbxref=GOA:Q0WID2,InterPro:IPR002938,InterPro:IPR003042,InterPro:IPR010971,InterPro:IPR018168,UniProtKB/TrEMBL:Q0WID2,NCBI_GP:CAL19575.1;Name=CAL19575.1;Note=Similar to Escherichia coli hypothetical VisC protein ( which is required for the biosynthesis of ubiquinone) SW:VISC_ECOLI (P25535) (400 aa) fasta scores: E(): 0%2C 71.4%25 id in 402 aa%2C and to Escherichia coli 2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol hydroxylase UbiF SW:UBIF_ECOLI (P75728) (391 aa) fasta scores: E(): 0%2C38.2%25 id in 395 aa;gbkey=CDS;gene=visC;product=putative monooxygenase;protein_id=CAL19575.1;transl_table=11
AL590842.1	EMBL	sequence_feature	996811	997398	.	-	.	ID=id2087;Note=Pfam match to entry PF01360 Monooxygenase%2CMonooxygenase%2C score 139.60%2C E-value 5.6e-38;gbkey=misc_feature;gene=visC;inference=protein motif:PF01360
AL590842.1	EMBL	sequence_feature	996940	996981	.	-	.	ID=id2088;Note=PS01304 ubiH/COQ6 monooxygenase family signature.;gbkey=misc_feature;gene=visC;inference=protein motif:ProSite:PS01304
AL590842.1	EMBL	sequence_feature	997213	997245	.	-	.	ID=id2089;Note=PS00133 Zinc carboxypeptidases%2C zinc-binding region 2 signature.;gbkey=misc_feature;gene=visC;inference=protein motif:ProSite:PS00133
AL590842.1	EMBL	gene	998045	999223	.	-	.	ID=gene905;Name=ubiH;gbkey=Gene;gene=ubiH;gene_biotype=protein_coding;locus_tag=YPO0909
AL590842.1	EMBL	CDS	998045	999223	.	-	0	ID=cds885;Parent=gene905;Dbxref=GOA:Q7CGT0,InterPro:IPR002938,InterPro:IPR003042,InterPro:IPR010971,InterPro:IPR011295,InterPro:IPR018168,UniProtKB/TrEMBL:Q7CGT0,NCBI_GP:CAL19576.1;Name=CAL19576.1;Note=Similar to Escherichia coli 2-octaprenyl-6-methoxyphenol hydroxylase UbiH SW:UBIH_ECOLI (P25534) (392 aa) fasta scores: E(): 0%2C 66.1%25 id in 392 aa%2Cand to Vibrio cholerae putative 2-octaprenyl-6-methoxyphenol hydroxylase VC2475 TR:Q9KP98 (EMBL:AE004317) (402 aa) fasta scores: E(): 0%2C 50.0%25 id in 394 aa;gbkey=CDS;gene=ubiH;inference=similar to sequence:INSDC:AE004317;product=2-octaprenyl-6-methoxyphenol hydroxylase;protein_id=CAL19576.1;transl_table=11
AL590842.1	EMBL	sequence_feature	998180	998764	.	-	.	ID=id2090;Note=Pfam match to entry PF01360 Monooxygenase%2CMonooxygenase%2C score 94.00%2C E-value 3e-24;gbkey=misc_feature;gene=ubiH;inference=protein motif:PF01360
AL590842.1	EMBL	sequence_feature	998309	998350	.	-	.	ID=id2091;Note=PS01304 ubiH/COQ6 monooxygenase family signature.;gbkey=misc_feature;gene=ubiH;inference=protein motif:ProSite:PS01304
AL590842.1	EMBL	gene	999292	1000605	.	-	.	ID=gene906;Name=pepP;gbkey=Gene;gene=pepP;gene_biotype=protein_coding;locus_tag=YPO0910
AL590842.1	EMBL	CDS	999292	1000605	.	-	0	ID=cds886;Parent=gene906;Dbxref=GOA:Q7CGS9,InterPro:IPR000994,InterPro:IPR001131,InterPro:IPR001714,InterPro:IPR007865,InterPro:IPR028980,InterPro:IPR029149,PDB:4PV4,UniProtKB/TrEMBL:Q7CGS9,NCBI_GP:CAL19577.1;Name=CAL19577.1;Note=Similar to Escherichia coli proline-specific (Xaa-Pro) aminopeptidase PepP SW:AMPP_ECOLI (P15034) (440 aa) fasta scores: E(): 0%2C 82.0%25 id in 433 aa%2C and to Shigella flexneri aminopeptidase PepP TR:O52579 (EMBL:AF041033) (441 aa) fasta scores: E(): 0%2C 81.8%25 id in 434 aa;gbkey=CDS;gene=pepP;inference=similar to sequence:INSDC:AF041033;product=proline-specific aminopeptidase;protein_id=CAL19577.1;transl_table=11
AL590842.1	EMBL	sequence_feature	999328	1000092	.	-	.	ID=id2092;Note=Pfam match to entry PF00557 Peptidase_M24%2Cmetallopeptidase family M24%2C score 368.00%2C E-value 1e-106;gbkey=misc_feature;gene=pepP;inference=protein motif:PF00557
AL590842.1	EMBL	sequence_feature	999526	999564	.	-	.	ID=id2093;Note=PS00491 Aminopeptidase P and proline dipeptidase signature.;gbkey=misc_feature;gene=pepP;inference=protein motif:ProSite:PS00491
AL590842.1	EMBL	gene	1000693	1001271	.	-	.	ID=gene907;Name=YPO0911;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0911
AL590842.1	EMBL	CDS	1000693	1001271	.	-	0	ID=cds887;Parent=gene907;Dbxref=InterPro:IPR011978,NCBI_GP:CAL19578.1;Name=CAL19578.1;Note=Similar to Escherichia coli hypothetical protein YgfB SW:YGFB_ECOLI (P25533) (194 aa) fasta scores: E(): 0%2C66.7%25 id in 192 aa%2C and to Haemophilus influenzae hypothetical protein HI0817 SW:YGFB_HAEIN (P44882) (182 aa) fasta scores: E(): 8.9e-29%2C 43.9%25 id in 187 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL19578.1;transl_table=11
AL590842.1	EMBL	gene	1001608	1001937	.	+	.	ID=gene908;Name=YPO0912;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0912
AL590842.1	EMBL	CDS	1001608	1001937	.	+	0	ID=cds888;Parent=gene908;Dbxref=GOA:Q0WIC8,InterPro:IPR007838,InterPro:IPR023771,NCBI_GP:CAL19579.1;Name=CAL19579.1;Note=Similar to Escherichia coli hypothetical protein YgfE SW:YGFE_ECOLI (P45580) (109 aa) fasta scores: E(): 0%2C79.8%25 id in 109 aa%2C and to Vibrio cholerae hypothetical protein VC2478 TR:Q9KP95 (EMBL:AE004317) (102 aa) fasta scores: E(): 2.1e-11%2C 41.5%25 id in 94 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004317;product=conserved hypothetical protein;protein_id=CAL19579.1;transl_table=11
AL590842.1	EMBL	gene	1001993	1002174	.	+	.	ID=gene909;Name=ssrS;gbkey=Gene;gene=ssrS;gene_biotype=misc_RNA
AL590842.1	EMBL	transcript	1001993	1002174	.	+	.	ID=rna14;Parent=gene909;Note=Similar to Escherichia coli 6S RNA%2C ssrS%2C 86%25 identity in 159 overlap;gbkey=misc_RNA;gene=ssrS
AL590842.1	EMBL	exon	1001993	1002174	.	+	.	ID=id2094;Parent=rna14;Note=Similar to Escherichia coli 6S RNA%2C ssrS%2C 86%25 identity in 159 overlap;gbkey=misc_RNA;gene=ssrS
AL590842.1	EMBL	gene	1002301	1002897	.	+	.	ID=gene910;Name=YPO0913;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0913
AL590842.1	EMBL	CDS	1002301	1002897	.	+	0	ID=cds889;Parent=gene910;Dbxref=GOA:Q7CGS8,InterPro:IPR002698,InterPro:IPR024185,UniProtKB/TrEMBL:Q7CGS8,NCBI_GP:CAL19580.1;Name=CAL19580.1;Note=Similar to Escherichia coli hypothetical protein YgfA SW:YGFA_ECOLI (P09160) (182 aa) fasta scores: E(): 0%2C69.6%25 id in 181 aa%2C and to Oryctolagus cuniculus 5-formyltetrahydrofolate cyclo-ligase SW:FTHC_RABIT (P80405) (201 aa) fasta scores: E(): 2.4e-13%2C 32.1%25 id in 187 aa;gbkey=CDS;product=putative 5-formyltetrahydrofolate cyclo-ligase-family protein;protein_id=CAL19580.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1002361	1002876	.	+	.	ID=id2095;Note=Pfam match to entry PF01812 5-FTHF_cyc-lig%2C5-formyltetrahydrofolate cyclo-ligase%2C score 248.90%2CE-value 7.2e-71;gbkey=misc_feature;inference=protein motif:PF01812
AL590842.1	EMBL	gene	1003162	1004403	.	-	.	ID=gene911;Name=serA;gbkey=Gene;gene=serA;gene_biotype=protein_coding;locus_tag=YPO0914
AL590842.1	EMBL	CDS	1003162	1004403	.	-	0	ID=cds890;Parent=gene911;Dbxref=GOA:Q0WIC6,InterPro:IPR002912,InterPro:IPR006139,InterPro:IPR006140,InterPro:IPR016040,InterPro:IPR029015,InterPro:IPR029752,InterPro:IPR029753,UniProtKB/TrEMBL:Q0WIC6,NCBI_GP:CAL19581.1;Name=CAL19581.1;Note=Similar to Escherichia coli D-3-phosphoglycerate dehydrogenase SerA SW:SERA_ECOLI (P08328) (409 aa) fasta scores: E(): 0%2C 83.7%25 id in 412 aa%2C and to Vibrio cholerae probable D-3-phosphoglycerate dehydrogenase VC2481 TR:Q9KP92 (EMBL:AE004317) (409 aa) fasta scores: E(): 0%2C74.3%25 id in 413 aa;gbkey=CDS;gene=serA;inference=similar to sequence:INSDC:AE004317;product=D-3-phosphoglycerate dehydrogenase;protein_id=CAL19581.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1003168	1003386	.	-	.	ID=id2096;Note=Pfam match to entry PF01842 ACT%2C ACT domain%2C score 52.00%2C E-value 1.3e-11;gbkey=misc_feature;gene=serA;inference=protein motif:PF01842
AL590842.1	EMBL	sequence_feature	1003528	1004151	.	-	.	ID=id2097;Note=Pfam match to entry PF00389 2-Hacid_DH%2C D-isomer specific 2-hydroxyacid dehydrogenases%2C score 360.80%2CE-value 1.8e-147;gbkey=misc_feature;gene=serA;inference=protein motif:PF00389
AL590842.1	EMBL	sequence_feature	1003669	1003719	.	-	.	ID=id2098;Note=PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3.;gbkey=misc_feature;gene=serA;inference=protein motif:ProSite:PS00671
AL590842.1	EMBL	sequence_feature	1003738	1003806	.	-	.	ID=id2099;Note=PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2.;gbkey=misc_feature;gene=serA;inference=protein motif:ProSite:PS00670
AL590842.1	EMBL	sequence_feature	1003861	1003944	.	-	.	ID=id2100;Note=PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.;gbkey=misc_feature;gene=serA;inference=protein motif:ProSite:PS00065
AL590842.1	EMBL	gene	1004710	1005366	.	-	.	ID=gene912;Name=rpiA;gbkey=Gene;gene=rpiA;gene_biotype=protein_coding;locus_tag=YPO0915
AL590842.1	EMBL	CDS	1004710	1005366	.	-	0	ID=cds891;Parent=gene912;Dbxref=GOA:Q8ZHH8,InterPro:IPR004788,InterPro:IPR020672,NCBI_GP:CAL19582.1;Name=CAL19582.1;Note=Similar to Escherichia coli ribose 5-phosphate isomerase A RpiA SW:RPIA_ECOLI (P27252) (219 aa) fasta scores: E(): 0%2C 83.4%25 id in 217 aa%2C and to Edwardsiella ictaluri ribose 5-phosphate isomerase A RpiA SW:RPIA_EDWIC (O52398) (219 aa) fasta scores: E(): 0%2C 81.6%25 id in 217 aa;gbkey=CDS;gene=rpiA;product=ribose 5-phosphate isomerase A;protein_id=CAL19582.1;transl_table=11
AL590842.1	EMBL	gene	1005708	1006616	.	+	.	ID=gene913;Name=iciA;gbkey=Gene;gene=iciA;gene_biotype=protein_coding;locus_tag=YPO0916
AL590842.1	EMBL	CDS	1005708	1006616	.	+	0	ID=cds892;Parent=gene913;Dbxref=GOA:P58510,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,InterPro:IPR017685,InterPro:IPR023490,NCBI_GP:CAL19583.1;Name=CAL19583.1;Note=Similar to Escherichia coli%2C LysR-family%2C chromosome initiation inhibitor IciA SW:ICIA_ECOLI (P24194) (297 aa) fasta scores: E(): 0%2C 91.9%25 id in 297 aa%2C and to Edwardsiella ictaluri chromosome initiation inhibitor IciA SW:ICIA_EDWIC (O52399) (297 aa) fasta scores: E(): 0%2C 89.9%25 id in 297 aa;gbkey=CDS;gene=iciA;product=chromosome initiation inhibitor;protein_id=CAL19583.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1005723	1006139	.	+	.	ID=id2101;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 108.70%2C E-value 1.1e-28;gbkey=misc_feature;gene=iciA;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	1005762	1005827	.	+	.	ID=id2102;Note=Predicted helix-turn-helix motif with score 1987 (+5.95 SD) at aa 35-56%2C sequence RGFERAAQKLCITQSAVSQRIK;gbkey=misc_feature;gene=iciA
AL590842.1	EMBL	sequence_feature	1005765	1005857	.	+	.	ID=id2103;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature.;gbkey=misc_feature;gene=iciA;inference=protein motif:ProSite:PS00044
AL590842.1	EMBL	gene	1006627	1007406	.	-	.	ID=gene914;Name=yggE;gbkey=Gene;gene=yggE;gene_biotype=protein_coding;locus_tag=YPO0917
AL590842.1	EMBL	CDS	1006627	1007406	.	-	0	ID=cds893;Parent=gene914;Dbxref=InterPro:IPR007497,UniProtKB/TrEMBL:Q0WIC3,NCBI_GP:CAL19584.1;Name=CAL19584.1;Note=Similar to Edwardsiella ictaluri hypothetical protein YggE SW:YGGE_EDWIC (O52400) (239 aa) fasta scores: E(): 0%2C 66.5%25 id in 239 aa%2C and to Escherichia coli hypothetical protein YggE SW:YGGE_ECOLI (P11668) (246 aa) fasta scores: E(): 0%2C 62.9%25 id in 251 aa;gbkey=CDS;gene=yggE;product=putative exported protein;protein_id=CAL19584.1;transl_table=11
AL590842.1	EMBL	gene	1007596	1008213	.	-	.	ID=gene915;Name=yggA;gbkey=Gene;gene=yggA;gene_biotype=protein_coding;locus_tag=YPO0918
AL590842.1	EMBL	CDS	1007596	1008213	.	-	0	ID=cds894;Parent=gene915;Dbxref=GOA:Q8ZHH6,InterPro:IPR001123,InterPro:IPR004777,InterPro:IPR023445,NCBI_GP:CAL19585.1;Name=CAL19585.1;Note=Similar to Escherichia coli hypothetical protein YggA SW:YGGA_ECOLI (P11667) (211 aa) fasta scores: E(): 0%2C68.6%25 id in 204 aa%2C and to Aeromonas salmonicida hypothetical protein YggA SW:YGGA_AERSA (P70775) (206 aa) fasta scores: E(): 0%2C 52.3%25 id in 199 aa;gbkey=CDS;gene=yggA;inference=protein motif:TMHMM:2.0;product=putative LysE type translocator;protein_id=CAL19585.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1007617	1007667	.	-	.	ID=id2104;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yggA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1007692	1008018	.	-	.	ID=id2105;Note=Pfam match to entry PF01810 LysE%2C LysE type translocator%2C score 105.10%2C E-value 1.4e-27;gbkey=misc_feature;gene=yggA;inference=protein motif:PF01810
AL590842.1	EMBL	sequence_feature	1007704	1007769	.	-	.	ID=id2106;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yggA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1007815	1007880	.	-	.	ID=id2107;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yggA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1007938	1008003	.	-	.	ID=id2108;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yggA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1008034	1008099	.	-	.	ID=id2109;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yggA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1008136	1008201	.	-	.	ID=id2110;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yggA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1008476	1009345	.	-	.	ID=gene916;Name=YPO0919;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0919
AL590842.1	EMBL	CDS	1008476	1009345	.	-	0	ID=cds895;Parent=gene916;Dbxref=GOA:Q7CGS6,InterPro:IPR006685,InterPro:IPR006686,InterPro:IPR008910,InterPro:IPR010920,InterPro:IPR011014,InterPro:IPR011066,UniProtKB/TrEMBL:Q7CGS6,NCBI_GP:CAL19586.1;Name=CAL19586.1;Note=Similar to Edwardsiella ictaluri hypothetical protein YggB SW:YGGB_EDWIC (O52401) (286 aa) fasta scores: E(): 0%2C 72.4%25 id in 286 aa%2C and to Escherichia coli hypothetical protein YggB SW:YGGB_ECOLI (P11666) (286 aa) fasta scores: E(): 0%2C 66.7%25 id in 285 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL19586.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1008539	1009138	.	-	.	ID=id2111;Note=Pfam match to entry PF00924 UPF0003%2C Uncharacterized protein family UPF0003%2C score 252.70%2C E-value 5.1e-72;gbkey=misc_feature;inference=protein motif:PF00924
AL590842.1	EMBL	sequence_feature	1008815	1008919	.	-	.	ID=id2112;Note=PS01246 Uncharacterized protein family UPF0003 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01246
AL590842.1	EMBL	sequence_feature	1008998	1009063	.	-	.	ID=id2113;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1009085	1009150	.	-	.	ID=id2114;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1009211	1009276	.	-	.	ID=id2115;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1009783	1010862	.	-	.	ID=gene917;Name=fba;gbkey=Gene;gene=fba;gene_biotype=protein_coding;gene_synonym=fbaA,fda;locus_tag=YPO0920
AL590842.1	EMBL	CDS	1009783	1010862	.	-	0	ID=cds896;Parent=gene917;Dbxref=GOA:Q7CGS5,InterPro:IPR000771,InterPro:IPR006411,InterPro:IPR013785,UniProtKB/TrEMBL:Q7CGS5,NCBI_GP:CAL19587.1;Name=CAL19587.1;Note=Similar to Escherichia coli fructose-bisphosphate aldolase class II FbaA SW:ALF_ECOLI (P11604) (358 aa) fasta scores: E(): 0%2C 91.3%25 id in 358 aa%2C and to Edwardsiella ictaluri fructose-bisphosphate aldolase FbaA SW:ALF_EDWIC (O52402) (358 aa) fasta scores: E(): 0%2C 89.1%25 id in 359 aa;gbkey=CDS;gene=fba;product=fructose-bisphosphate aldolase class II;protein_id=CAL19587.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1009786	1010823	.	-	.	ID=id2116;Note=Pfam match to entry PF01116 F_bP_aldolase%2CFructose-bisphosphate aldolase class-II%2C score 703.10%2CE-value 1.3e-207;gbkey=misc_feature;gene=fba;inference=protein motif:PF01116
AL590842.1	EMBL	sequence_feature	1010314	1010349	.	-	.	ID=id2117;Note=PS00806 Fructose-bisphosphate aldolase class-II signature 2.;gbkey=misc_feature;gene=fba;inference=protein motif:ProSite:PS00806
AL590842.1	EMBL	sequence_feature	1010527	1010562	.	-	.	ID=id2118;Note=PS00602 Fructose-bisphosphate aldolase class-II signature 1.;gbkey=misc_feature;gene=fba;inference=protein motif:ProSite:PS00602
AL590842.1	EMBL	gene	1010982	1012145	.	-	.	ID=gene918;Name=pgk;gbkey=Gene;gene=pgk;gene_biotype=protein_coding;locus_tag=YPO0921
AL590842.1	EMBL	CDS	1010982	1012145	.	-	0	ID=cds897;Parent=gene918;Dbxref=GOA:Q8ZHH3,InterPro:IPR001576,InterPro:IPR015824,InterPro:IPR015901,InterPro:IPR015911,NCBI_GP:CAL19588.1;Name=CAL19588.1;Note=Similar to Escherichia coli phosphoglycerate kinase Pgk SW:PGK_ECOLI (P11665) (386 aa) fasta scores: E(): 0%2C88.6%25 id in 386 aa%2C and to Haemophilus influenzae phosphoglycerate kinase Pgk SW:PGK_HAEIN (P43726) (385 aa) fasta scores: E(): 0%2C 79.2%25 id in 385 aa;gbkey=CDS;gene=pgk;product=phosphoglycerate kinase;protein_id=CAL19588.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1010991	1012145	.	-	.	ID=id2119;Note=Pfam match to entry PF00162 PGK%2C Phosphoglycerate kinases%2C score 718.50%2C E-value 2.9e-212;gbkey=misc_feature;gene=pgk;inference=protein motif:PF00162
AL590842.1	EMBL	sequence_feature	1012071	1012103	.	-	.	ID=id2120;Note=PS00111 Phosphoglycerate kinase signature.;gbkey=misc_feature;gene=pgk;inference=protein motif:ProSite:PS00111
AL590842.1	EMBL	gene	1012248	1013264	.	-	.	ID=gene919;Name=epd;gbkey=Gene;gene=epd;gene_biotype=protein_coding;gene_synonym=gapB;locus_tag=YPO0922
AL590842.1	EMBL	CDS	1012248	1013264	.	-	0	ID=cds898;Parent=gene919;Dbxref=GOA:Q7CGS4,InterPro:IPR006422,InterPro:IPR016040,InterPro:IPR020828,InterPro:IPR020829,InterPro:IPR020830,InterPro:IPR020831,NCBI_GP:CAL19589.1;Name=CAL19589.1;Note=Similar to Escherichia coli D-erythrose 4-phosphate dehydrogenase Epd SW:E4PD_ECOLI (P11603) (338 aa) fasta scores: E(): 0%2C 82.7%25 id in 336 aa%2C and to Vibrio cholerae erythrose-4-phosphate dehydrogenase Epd TR:P96153 (EMBL:U72152) (341 aa) fasta scores: E(): 0%2C 69.0%25 id in 336 aa;gbkey=CDS;gene=epd;inference=similar to sequence:INSDC:U72152;product=D-erythrose 4-phosphate dehydrogenase;protein_id=CAL19589.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1012257	1013261	.	-	.	ID=id2121;Note=Pfam match to entry PF00044 gpdh%2C glyceraldehyde 3-phosphate dehydrogenases%2C score 530.30%2C E-value 6.4e-158;gbkey=misc_feature;gene=epd;inference=protein motif:PF00044
AL590842.1	EMBL	sequence_feature	1012785	1012808	.	-	.	ID=id2122;Note=PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site.;gbkey=misc_feature;gene=epd;inference=protein motif:ProSite:PS00071
AL590842.1	EMBL	sequence_feature	1013034	1013078	.	-	.	ID=id2123;Note=PS00090 Nitrogenases component 1 alpha and beta subunits signature 2.;gbkey=misc_feature;gene=epd;inference=protein motif:ProSite:PS00090
AL590842.1	EMBL	repeat_region	1013513	1015466	.	-	.	ID=id2124;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	1013513	1013540	.	+	.	ID=id2125;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1013579	1014361	.	-	.	ID=gene920;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO0923
AL590842.1	EMBL	CDS	1013579	1014361	.	-	0	ID=cds899;Parent=gene920;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL19590.1;Name=CAL19590.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL19590.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1013654	1014193	.	-	.	ID=id2126;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	1014011	1014034	.	-	.	ID=id2127;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1014358	1015380	.	-	.	ID=gene921;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO0924
AL590842.1	EMBL	CDS	1014358	1015380	.	-	0	ID=cds900;Parent=gene921;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL19591.1;Name=CAL19591.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL19591.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1014502	1015035	.	-	.	ID=id2128;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	sequence_feature	1015264	1015329	.	-	.	ID=id2129;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	1015273	1015356	.	-	.	ID=id2130;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	INVERTED	1015439	1015466	.	-	.	ID=id2131;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	repeat_region	1015465	1016167	.	-	.	ID=id2132;Note=Contains an 'A' at nucleotide position 315.%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	1015564	1016022	.	-	.	ID=gene922;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO0925
AL590842.1	EMBL	CDS	1015564	1016022	.	-	0	ID=cds901;Parent=gene922;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL19592.1;Name=CAL19592.1;Note=Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541 element transposase Tn TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL19592.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1015657	1015968	.	-	.	ID=id2133;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	1016330	1018324	.	-	.	ID=gene923;Name=tkt;gbkey=Gene;gene=tkt;gene_biotype=protein_coding;gene_synonym=tktA;locus_tag=YPO0926
AL590842.1	EMBL	CDS	1016330	1018324	.	-	0	ID=cds902;Parent=gene923;Dbxref=GOA:Q7CGS3,InterPro:IPR005474,InterPro:IPR005475,InterPro:IPR005476,InterPro:IPR005478,InterPro:IPR009014,InterPro:IPR020826,InterPro:IPR029061,UniProtKB/TrEMBL:Q7CGS3,NCBI_GP:CAL19593.1;Name=CAL19593.1;Note=Similar to Escherichia coli transketolase 1 TktA SW:TKT1_ECOLI (P27302) (663 aa) fasta scores: E(): 0%2C 86.1%25 id in 663 aa%2C and to Vibrio cholerae transketolase 1 VC0473 TR:Q9KUP2 (EMBL:AE004133) (694 aa) fasta scores: E(): 0%2C80.1%25 id in 664 aa;gbkey=CDS;gene=tkt;inference=similar to sequence:INSDC:AE004133;product=transketolase 1;protein_id=CAL19593.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1016360	1018303	.	-	.	ID=id2134;Note=Pfam match to entry PF00456 transketolase%2CTransketolase%2C score 1577.40%2C E-value 0;gbkey=misc_feature;gene=tkt;inference=protein motif:PF00456
AL590842.1	EMBL	sequence_feature	1016876	1016926	.	-	.	ID=id2135;Note=PS00802 Transketolase signature 2.;gbkey=misc_feature;gene=tkt;inference=protein motif:ProSite:PS00802
AL590842.1	EMBL	sequence_feature	1017011	1017076	.	-	.	ID=id2136;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=tkt;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1018229	1018291	.	-	.	ID=id2137;Note=PS00801 Transketolase signature 1.;gbkey=misc_feature;gene=tkt;inference=protein motif:ProSite:PS00801
AL590842.1	EMBL	gene	1018815	1019567	.	+	.	ID=gene924;Name=YPO0927;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0927
AL590842.1	EMBL	CDS	1018815	1019567	.	+	0	ID=cds903;Parent=gene924;Dbxref=GOA:Q0WIB3,InterPro:IPR001915,UniProtKB/TrEMBL:Q0WIB3,NCBI_GP:CAL19594.1;Name=CAL19594.1;Note=Similar to Escherichia coli hypothetical protein YggG SW:YGGG_ECOLI (P25894) (252 aa) fasta scores: E(): 0%2C69.1%25 id in 249 aa%2C and to Pseudomonas aeruginosa conserved hypothetical protein PA0277 TR:AAG03666 (EMBL:AE004465) (252 aa) fasta scores: E(): 0%2C 63.9%25 id in 252 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004465;product=putative lipoprotein;protein_id=CAL19594.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1018839	1018871	.	+	.	ID=id2138;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	1019857	1020177	.	-	.	ID=gene925;Name=YPO0928;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0928
AL590842.1	EMBL	CDS	1019857	1020177	.	-	0	ID=cds904;Parent=gene925;Dbxref=GOA:Q7CGS2,InterPro:IPR017941,UniProtKB/TrEMBL:Q7CGS2,NCBI_GP:CAL19595.1;Name=CAL19595.1;Note=Similar to Pseudomonas putida benzene 1%2C2-dioxygenase system ferredoxin component BedB SW:BEDB_PSEPU (Q07947) (107 aa) fasta scores: E(): 6.6e-12%2C35.8%25 id in 106 aa%2C and to Acinetobacter sp ADP1 hypothetical protein TR:O24846 (EMBL:AF009672) (101 aa) fasta scores: E(): 1.9e-19%2C 42.6%25 id in 101 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF009672;product=putative Rieske protein;protein_id=CAL19595.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1019935	1020117	.	-	.	ID=id2139;Note=Pfam match to entry PF00355 Rieske%2C Rieske [2Fe-2S] domain%2C score 59.20%2C E-value 8.7e-14;gbkey=misc_feature;inference=protein motif:PF00355
AL590842.1	EMBL	gene	1020337	1022316	.	-	.	ID=gene926;Name=speA;gbkey=Gene;gene=speA;gene_biotype=protein_coding;locus_tag=YPO0929
AL590842.1	EMBL	CDS	1020337	1022316	.	-	0	ID=cds905;Parent=gene926;Dbxref=GOA:Q8ZHG8,InterPro:IPR000183,InterPro:IPR002985,InterPro:IPR009006,InterPro:IPR022643,InterPro:IPR022644,InterPro:IPR022653,InterPro:IPR022657,InterPro:IPR029066,NCBI_GP:CAL19596.1;Name=CAL19596.1;Note=Similar to Escherichia coli biosynthetic arginine decarboxylase SpeA SW:SPEA_ECOLI (P21170) (658 aa) fasta scores: E(): 0%2C 84.7%25 id in 659 aa%2C and to Neisseria meningitidis biosynthetic arginine decarboxylase NMB0468 TR:Q9K0U3 (EMBL:AE002403) (630 aa) fasta scores: E(): 0%2C69.7%25 id in 620 aa;gbkey=CDS;gene=speA;inference=similar to sequence:INSDC:AE002403;product=biosynthetic arginine decarboxylase;protein_id=CAL19596.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1020577	1022046	.	-	.	ID=id2140;Note=Pfam match to entry PF00278 Orn_DAP_Arg_deC%2CPyridoxal-dependent decarboxylase%2C score 604.40%2C E-value 7.2e-180;gbkey=misc_feature;gene=speA;inference=protein motif:PF00278
AL590842.1	EMBL	sequence_feature	1021372	1021413	.	-	.	ID=id2141;Note=PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2.;gbkey=misc_feature;gene=speA;inference=protein motif:ProSite:PS00879
AL590842.1	EMBL	sequence_feature	1021888	1021944	.	-	.	ID=id2142;Note=PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.;gbkey=misc_feature;gene=speA;inference=protein motif:ProSite:PS00878
AL590842.1	EMBL	gene	1023523	1024677	.	+	.	ID=gene927;Name=metK;gbkey=Gene;gene=metK;gene_biotype=protein_coding;locus_tag=YPO0931
AL590842.1	EMBL	CDS	1023523	1024677	.	+	0	ID=cds906;Parent=gene927;Dbxref=GOA:Q8ZHG7,InterPro:IPR002133,InterPro:IPR022628,InterPro:IPR022629,InterPro:IPR022630,InterPro:IPR022631,InterPro:IPR022636,NCBI_GP:CAL19597.1;Name=CAL19597.1;Note=Similar to Escherichia coli S-adenosylmethionine synthetase MetK SW:METK_ECOLI (P04384) (384 aa) fasta scores: E(): 0%2C 93.5%25 id in 384 aa%2C and to Vibrio cholerae S-adenosylmethionine synthase VC0472 TR:Q9KUP3 (EMBL:AE004133) (385 aa) fasta scores: E(): 0%2C 86.1%25 id in 382 aa;gbkey=CDS;gene=metK;inference=similar to sequence:INSDC:AE004133;product=S-adenosylmethionine synthetase;protein_id=CAL19597.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1023529	1024629	.	+	.	ID=id2143;Note=Pfam match to entry PF00438 S-AdoMet_synt%2CS-adenosylmethionine synthetase%2C score 906.40%2C E-value 0;gbkey=misc_feature;gene=metK;inference=protein motif:PF00438
AL590842.1	EMBL	sequence_feature	1023868	1023900	.	+	.	ID=id2144;Note=PS00376 S-adenosylmethionine synthetase signature 1.;gbkey=misc_feature;gene=metK;inference=protein motif:ProSite:PS00376
AL590842.1	EMBL	sequence_feature	1024297	1024323	.	+	.	ID=id2145;Note=PS00377 S-adenosylmethionine synthetase signature 2.;gbkey=misc_feature;gene=metK;inference=protein motif:ProSite:PS00377
AL590842.1	EMBL	gene	1024870	1025382	.	+	.	ID=gene928;Name=YPO0932;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0932
AL590842.1	EMBL	CDS	1024870	1025382	.	+	0	ID=cds907;Parent=gene928;Dbxref=GOA:Q8ZHG6,InterPro:IPR006640,InterPro:IPR023483,NCBI_GP:CAL19598.1;Name=CAL19598.1;Note=Similar to Escherichia coli hypothetical protein SprT SW:SPRT_ECOLI (P39902) (165 aa) fasta scores: E(): 0%2C69.8%25 id in 162 aa%2C and to Haemophilus influenzae hypothetical protein HI1173 SW:SPRT_HAEIN (P44119) (156 aa) fasta scores: E(): 1.8e-30%2C 52.0%25 id in 148 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19598.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1025092	1025121	.	+	.	ID=id2146;Note=PS00142 Neutral zinc metallopeptidases%2C zinc-binding region signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00142
AL590842.1	EMBL	gene	1025480	1026187	.	+	.	ID=gene929;Name=endA;gbkey=Gene;gene=endA;gene_biotype=protein_coding;gene_synonym=nucM;locus_tag=YPO0933
AL590842.1	EMBL	CDS	1025480	1026187	.	+	0	ID=cds908;Parent=gene929;Dbxref=GOA:Q7CGS1,InterPro:IPR007346,UniProtKB/TrEMBL:Q7CGS1,NCBI_GP:CAL19599.1;Name=CAL19599.1;Note=Similar to Escherichia coli endonuclease I EndA SW:END1_ECOLI (P25736) (235 aa) fasta scores: E(): 0%2C 74.0%25 id in 235 aa%2C and to Erwinia chrysanthemi nuclease NucM SW:NUCM_ERWCH (P37994) (266 aa) fasta scores: E(): 0%2C 75.7%25 id in 230 aa. Orthologues are periplasmic proteins. CDS is predicted to have an uncleavable N-terminal signal sequence. Effect on the function is unknown.;gbkey=CDS;gene=endA;product=endonuclease I;protein_id=CAL19599.1;transl_table=11
AL590842.1	EMBL	gene	1026439	1027170	.	+	.	ID=gene930;Name=YPO0934;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0934
AL590842.1	EMBL	CDS	1026439	1027170	.	+	0	ID=cds909;Parent=gene930;Dbxref=GOA:Q7CGS0,InterPro:IPR006700,InterPro:IPR015947,InterPro:IPR029026,InterPro:IPR029028,UniProtKB/TrEMBL:Q7CGS0,NCBI_GP:CAL19600.1;Name=CAL19600.1;Note=Similar to Escherichia coli hypothetical protein YggJ SW:YGGJ_ECOLI (P37912) (243 aa) fasta scores: E(): 0%2C78.2%25 id in 243 aa%2C and to Haemophilus influenzae hypothetical protein HI0303 SW:YGGJ_HAEIN (P44627) (245 aa) fasta scores: E(): 0%2C 68.4%25 id in 244 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19600.1;transl_table=11
AL590842.1	EMBL	gene	1027196	1028155	.	+	.	ID=gene931;Name=gsh-II;gbkey=Gene;gene=gsh-II;gene_biotype=protein_coding;gene_synonym=gshB;locus_tag=YPO0935
AL590842.1	EMBL	CDS	1027196	1028155	.	+	0	ID=cds910;Parent=gene931;Dbxref=GOA:P58582,InterPro:IPR004215,InterPro:IPR004218,InterPro:IPR006284,InterPro:IPR011761,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016185,NCBI_GP:CAL19601.1;Name=CAL19601.1;Note=Similar to Escherichia coli glutathione synthetase GshB SW:GSHB_ECOLI (P04425) (316 aa) fasta scores: E(): 0%2C80.1%25 id in 317 aa%2C and to Vibrio cholerae glutathione synthetase VC0468 TR:Q9KUP7 (EMBL:AE004133) (318 aa) fasta scores: E(): 0%2C 73.9%25 id in 314 aa;gbkey=CDS;gene=gsh-II;inference=similar to sequence:INSDC:AE004133;product=glutathione synthetase;protein_id=CAL19601.1;transl_table=11
AL590842.1	EMBL	gene	1028271	1028834	.	+	.	ID=gene932;Name=YPO0936;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0936
AL590842.1	EMBL	CDS	1028271	1028834	.	+	0	ID=cds911;Parent=gene932;Dbxref=InterPro:IPR003774,NCBI_GP:CAL19602.1;Name=CAL19602.1;Note=Similar to Escherichia coli protein YqgE SW:YQGE_ECOLI (P52049) (187 aa) fasta scores: E(): 0%2C 66.8%25 id in 187 aa%2C and to Vibrio cholerae hypothetical protein VC0467 TR:Q9KUP8 (EMBL:AE004133) (200 aa) fasta scores: E(): 0%2C 51.6%25 id in 190 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004133;product=conserved hypothetical protein;protein_id=CAL19602.1;transl_table=11
AL590842.1	EMBL	gene	1028834	1029256	.	+	.	ID=gene933;Name=YPO0937;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0937
AL590842.1	EMBL	CDS	1028834	1029256	.	+	0	ID=cds912;Parent=gene933;Dbxref=GOA:Q8ZHG2,InterPro:IPR005227,InterPro:IPR006641,InterPro:IPR012337,NCBI_GP:CAL19603.1;Name=CAL19603.1;Note=Similar to Escherichia coli hypothetical protein YqgF SW:YQGF_ECOLI (P52050) (138 aa) fasta scores: E(): 0%2C76.7%25 id in 133 aa%2C and to Aeromonas hydrophila hypothetical protein YqgF TR:Q9L3I7 (EMBL:AJ276030) (140 aa) fasta scores: E(): 0%2C 67.1%25 id in 140 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ276030;product=conserved hypothetical protein;protein_id=CAL19603.1;transl_table=11
AL590842.1	EMBL	gene	1029436	1030320	.	+	.	ID=gene934;Name=YPO0938;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0938
AL590842.1	EMBL	CDS	1029436	1030320	.	+	0	ID=cds913;Parent=gene934;Dbxref=GOA:Q7CGR9,InterPro:IPR003010,InterPro:IPR017755,UniProtKB/TrEMBL:Q7CGR9,NCBI_GP:CAL19604.1;Name=CAL19604.1;Note=Similar to Pseudomonas aeruginosa probable hydratase PA0293 TR:AAG03682 (EMBL:AE004467) (292 aa) fasta scores: E(): 0%2C 63.9%25 id in 291 aa%2C and to eukaryoyic Lycopersicon esculentum (Tomato) beta-alanine synthase TR:Q9XGI9 (EMBL:Y19104) (300 aa) fasta scores: E(): 0%2C 60.1%25 id in 288 aa;gbkey=CDS;inference=similar to sequence:INSDC:Y19104;product=putative carbon-nitrogen hydrolase;protein_id=CAL19604.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1029442	1030281	.	+	.	ID=id2147;Note=Pfam match to entry PF00795 CN_hydrolase%2CCarbon-nitrogen hydrolase%2C score 278.90%2C E-value 6.7e-80;gbkey=misc_feature;inference=protein motif:PF00795
AL590842.1	EMBL	gene	1030324	1031439	.	+	.	ID=gene935;Name=YPO0939;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0939
AL590842.1	EMBL	CDS	1030324	1031439	.	+	0	ID=cds914;Parent=gene935;Dbxref=GOA:Q8ZHG0,InterPro:IPR007466,InterPro:IPR017754,NCBI_GP:CAL19605.1;Name=CAL19605.1;Note=Similar to Pseudomonas aeruginosa conserved hypothetical protein PA0292 TR:AAG03681 (EMBL:AE004467) (368 aa) fasta scores: E(): 0%2C 57.5%25 id in 358 aa%2C and to eukaryotic Arabidopsis thaliana hypothetical protein T22D6_110 TR:Q9LEZ0 (EMBL:AL357612) (383 aa) fasta scores: E(): 0%2C 51.4%25 id in 368 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL357612;product=conserved hypothetical protein;protein_id=CAL19605.1;transl_table=11
AL590842.1	EMBL	gene	1031548	1032624	.	-	.	ID=gene936;Name=YPO0940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0940
AL590842.1	EMBL	CDS	1031548	1032624	.	-	0	ID=cds915;Parent=gene936;Dbxref=GOA:Q0WIA1,InterPro:IPR001482,InterPro:IPR003593,InterPro:IPR006321,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WIA1,NCBI_GP:CAL19606.1;Name=CAL19606.1;Note=Similar to Pseudomonas aeruginosa twitching mobility protein PilT SW:PILT_PSEAE (P24559) (344 aa) fasta scores: E(): 0%2C 45.2%25 id in 330 aa%2C and to Escherichia coli hypothetical protein YggR SW:YGGR_ECOLI (P52052) (326 aa) fasta scores: E(): 0%2C 56.3%25 id in 325 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19606.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1031740	1031997	.	-	.	ID=id2148;Note=Pfam match to entry PF00437 GSPII_E%2C Bacterial type II secretion system protein%2C score 88.80%2C E-value 1.2e-25;gbkey=misc_feature;inference=protein motif:PF00437
AL590842.1	EMBL	sequence_feature	1031929	1031973	.	-	.	ID=id2149;Note=PS00662 Bacterial type II secretion system protein E signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00662
AL590842.1	EMBL	sequence_feature	1032061	1032207	.	-	.	ID=id2150;Note=Pfam match to entry PF00437 GSPII_E%2C Bacterial type II secretion system protein%2C score 58.50%2C E-value 1.2e-16;gbkey=misc_feature;inference=protein motif:PF00437
AL590842.1	EMBL	sequence_feature	1032139	1032162	.	-	.	ID=id2151;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1032692	1033390	.	+	.	ID=gene937;Name=YPO0941;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0941
AL590842.1	EMBL	CDS	1032692	1033390	.	+	0	ID=cds916;Parent=gene937;Dbxref=InterPro:IPR001608,InterPro:IPR011078,InterPro:IPR029066,UniProtKB/TrEMBL:Q0WIA0,NCBI_GP:CAL19607.1;Name=CAL19607.1;Note=Similar to Escherichia coli hypothetical protein YggS SW:YGGS_ECOLI (P52054) (234 aa) fasta scores: E(): 0%2C69.0%25 id in 232 aa%2C and to Vibrio cholerae hypothetical protein VC0461 TR:Q9KUQ4 (EMBL:AE004132) (236 aa) fasta scores: E(): 0%2C 62.2%25 id in 233 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004132;product=conserved hypothetical protein;protein_id=CAL19607.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1032707	1033375	.	+	.	ID=id2152;Note=Pfam match to entry PF01168 UPF0001%2C Uncharacterized protein family UPF0001%2C score 454.80%2C E-value 7.3e-133;gbkey=misc_feature;inference=protein motif:PF01168
AL590842.1	EMBL	sequence_feature	1032920	1032964	.	+	.	ID=id2153;Note=PS01211 Uncharacterized protein family UPF0001 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01211
AL590842.1	EMBL	gene	1033523	1034344	.	+	.	ID=gene938;Name=proC;gbkey=Gene;gene=proC;gene_biotype=protein_coding;locus_tag=YPO0942
AL590842.1	EMBL	CDS	1033523	1034344	.	+	0	ID=cds917;Parent=gene938;Dbxref=GOA:Q7CGR8,InterPro:IPR000304,InterPro:IPR008927,InterPro:IPR016040,InterPro:IPR028939,InterPro:IPR029036,UniProtKB/TrEMBL:Q7CGR8,NCBI_GP:CAL19608.1;Name=CAL19608.1;Note=Similar to Vibrio alginolyticus pyrroline-5-carboxylate reductase ProC SW:PROC_VIBAL (P52053) (278 aa) fasta scores: E(): 0%2C 61.9%25 id in 273 aa%2Cand to Vibrio cholerae probable pyrroline-5-carboxylate reductase VC0460 TR:Q9KUQ5 (EMBL:AE004132) (272 aa) fasta scores: E(): 0%2C 64.5%25 id in 273 aa;gbkey=CDS;gene=proC;inference=similar to sequence:INSDC:AE004132;product=putative pyrroline-5-carboxylate reductase;protein_id=CAL19608.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1033532	1034284	.	+	.	ID=id2154;Note=Pfam match to entry PF01089 P5CR%2C Delta 1-pyrroline-5-carboxylate reductase%2C score 327.00%2C E-value 2.2e-94;gbkey=misc_feature;gene=proC;inference=protein motif:PF01089
AL590842.1	EMBL	sequence_feature	1033547	1033612	.	+	.	ID=id2155;Note=PS00107 Protein kinases ATP-binding region signature.;gbkey=misc_feature;gene=proC;inference=protein motif:ProSite:PS00107
AL590842.1	EMBL	sequence_feature	1034192	1034263	.	+	.	ID=id2156;Note=PS00521 Delta 1-pyrroline-5-carboxylate reductase signature.;gbkey=misc_feature;gene=proC;inference=protein motif:ProSite:PS00521
AL590842.1	EMBL	gene	1034632	1035186	.	+	.	ID=gene939;Name=yggT;gbkey=Gene;gene=yggT;gene_biotype=protein_coding;locus_tag=YPO0943
AL590842.1	EMBL	CDS	1034632	1035186	.	+	0	ID=cds918;Parent=gene939;Dbxref=GOA:Q7CGR7,InterPro:IPR003425,UniProtKB/TrEMBL:Q7CGR7,NCBI_GP:CAL19609.1;Name=CAL19609.1;Note=Similar to Escherichia coli hypothetical protein YggT SW:YGGT_ECOLI (P52058) (188 aa) fasta scores: E(): 0%2C58.7%25 id in 184 aa%2C and to Vibrio cholerae hypothetical protein VC0459 vc0459 TR:Q9KUQ6 (EMBL:AE004132) (185 aa) fasta scores: E(): 0%2C 54.6%25 id in 185 aa;gbkey=CDS;gene=yggT;inference=similar to sequence:INSDC:AE004132;product=putative membrane protein;protein_id=CAL19609.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1034632	1034901	.	+	.	ID=id2157;Note=Pfam match to entry PF02325 YGGT%2C %2C score 29.80%2CE-value 6.4e-05;gbkey=misc_feature;gene=yggT;inference=protein motif:PF02325
AL590842.1	EMBL	sequence_feature	1034635	1034703	.	+	.	ID=id2158;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=yggT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1034812	1034880	.	+	.	ID=id2159;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=yggT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1034899	1034967	.	+	.	ID=id2160;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=yggT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1034917	1035159	.	+	.	ID=id2161;Note=Pfam match to entry PF02325 YGGT%2C %2C score 85.00%2CE-value 1.6e-21;gbkey=misc_feature;gene=yggT;inference=protein motif:PF02325
AL590842.1	EMBL	sequence_feature	1035109	1035177	.	+	.	ID=id2162;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=yggT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1035183	1035473	.	+	.	ID=gene940;Name=YPO0944;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0944
AL590842.1	EMBL	CDS	1035183	1035473	.	+	0	ID=cds919;Parent=gene940;Dbxref=InterPro:IPR003746,InterPro:IPR005228,NCBI_GP:CAL19610.1;Name=CAL19610.1;Note=Similar to Escherichia coli hypothetical protein YggU SW:YGGU_ECOLI (P52060) (96 aa) fasta scores: E(): 1.5e-29%2C 78.9%25 id in 95 aa%2C and to Vibrio cholerae hypothetical protein VC0458 TR:Q9KUQ7 (EMBL:AE004132) (96 aa) fasta scores: E(): 1.2e-22%2C 65.9%25 id in 88 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004132;product=conserved hypothetical protein;protein_id=CAL19610.1;transl_table=11
AL590842.1	EMBL	gene	1035573	1036166	.	+	.	ID=gene941;Name=YPO0945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0945
AL590842.1	EMBL	CDS	1035573	1036166	.	+	0	ID=cds920;Parent=gene941;Dbxref=GOA:Q8ZHF4,InterPro:IPR002637,InterPro:IPR020922,InterPro:IPR029001,NCBI_GP:CAL19611.1;Name=CAL19611.1;Note=Similar to Escherichia coli hypothetical protein YggV SW:YGGV_ECOLI (P52061) (197 aa) fasta scores: E(): 0%2C79.6%25 id in 196 aa%2C and to Vibrio cholerae Ham1 protein VC0456 TR:Q9KUQ9 (EMBL:AE004132) (200 aa) fasta scores: E(): 0%2C 65.8%25 id in 196 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004132;product=conserved hypothetical protein;protein_id=CAL19611.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1035582	1036154	.	+	.	ID=id2163;Note=Pfam match to entry PF01725 Ham1p_like%2C Ham1 family%2Cscore 336.70%2C E-value 2.5e-97;gbkey=misc_feature;inference=protein motif:PF01725
AL590842.1	EMBL	gene	1036159	1037289	.	+	.	ID=gene942;Name=YPO0946;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0946
AL590842.1	EMBL	CDS	1036159	1037289	.	+	0	ID=cds921;Parent=gene942;Dbxref=GOA:Q0WI95,InterPro:IPR004559,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR010723,InterPro:IPR023404,UniProtKB/TrEMBL:Q0WI95,NCBI_GP:CAL19612.1;Name=CAL19612.1;Note=Similar to Escherichia coli hypothetical protein YggW SW:YGGW_ECOLI (P52062) (378 aa) fasta scores: E(): 0%2C81.6%25 id in 376 aa%2C and to Haemophilus influenzae hypothetical protein HI0463SW:YGGW_HAEIN (P43899) (383 aa) fasta scores: E(): 0%2C 65.8%25 id in 380 aa;gbkey=CDS;product=putative oxygen-independent coproporphyrinogen III oxidase;protein_id=CAL19612.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1036315	1037010	.	+	.	ID=id2164;Note=Pfam match to entry PF02473 Coprogen_an_ox%2C %2C score -4.90%2C E-value 4.7e-14;gbkey=misc_feature;inference=protein motif:PF02473
AL590842.1	EMBL	gene	1037479	1046811	.	-	.	ID=gene943;Name=YPO0947;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0947
AL590842.1	EMBL	CDS	1037479	1046811	.	-	0	ID=cds922;Parent=gene943;Dbxref=InterPro:IPR011049,InterPro:IPR020974,UniProtKB/TrEMBL:Q7CGR6,NCBI_GP:CAL19613.1;Name=CAL19613.1;Note=No significant database matches to the full length CDS. Internal regions similar to Vibrio cholerae RTX toxin gene cluster protein RtxA TR:Q9X4W2 (EMBL:AF119150) (4545 aa) fasta scores: E(): 1.9e-10%2C 32.4%25 id in 241 aa%2C and to Rhizobium leguminosarum putative bacteriocin TR:O33527 (EMBL:AJ001518) (958 aa) fasta scores: E(): 8.4e-05%2C 21.2%25 id in 900 aa. CDS DNA encoding protein has a low GC content%2C 37.22%25;gbkey=CDS;inference=similar to sequence:INSDC:AJ001518;product=putative virulence determinant;protein_id=CAL19613.1;transl_table=11
AL590842.1	EMBL	pseudogene	1047313	1048067	.	-	.	ID=gene944;Name=YPO0948;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO0948;pseudo=true
AL590842.1	EMBL	CDS	1047313	1048067	.	-	0	ID=cds923;Parent=gene944;Note=Similar to Escherichia coli hypothetical protein YggN SW:YGGN_ECOLI (P46143) (239 aa) fasta scores: E(): 0%2C60.6%25 id in 231 aa%2C and to Vibrio cholerae hypothetical protein VC2286 TR:Q9KPS6 (EMBL:AE004299) (256 aa) fasta scores: E(): 0.00045%2C 26.1%25 id in 241 aa. Contains a frameshift after codon 166. Frame shift occurs at a poly A pentamer. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=similar to sequence:INSDC:AE004299;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	1048155	1049081	.	-	.	ID=gene945;Name=YPO0949;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0949
AL590842.1	EMBL	CDS	1048155	1049081	.	-	0	ID=cds924;Parent=gene945;Dbxref=GOA:Q8ZHF1,InterPro:IPR012338,InterPro:IPR015868,NCBI_GP:CAL19615.1;Name=CAL19615.1;Note=Similar to Rhizobium etli thermolabile glutaminase GlsA TR:O87405 (EMBL:AF057158) (309 aa) fasta scores: E(): 0%2C 52.6%25 id in 304 aa%2C and to Escherichia coli hypothetical protein YneH SW:YNEH_ECOLI (P77470) (308 aa) fasta scores: E(): 0%2C 74.4%25 id in 308 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF057158;product=putative glutaminase;protein_id=CAL19615.1;transl_table=11
AL590842.1	EMBL	gene	1049192	1049518	.	-	.	ID=gene946;Name=YPO0950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0950
AL590842.1	EMBL	CDS	1049192	1049518	.	-	0	ID=cds925;Parent=gene946;Dbxref=InterPro:IPR007416,UniProtKB/TrEMBL:Q7CGR4,NCBI_GP:CAL19616.1;Name=CAL19616.1;Note=Similar to Escherichia coli hypothetical protein YggL SW:YGGL_ECOLI (P38521) (108 aa) fasta scores: E(): 0%2C78.7%25 id in 108 aa%2C and to Haemophilus influenzae hypothetical protein HI0341 SW:YGGL_HAEIN (P44649) (114 aa) fasta scores: E(): 1.7e-27%2C 59.3%25 id in 108 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19616.1;transl_table=11
AL590842.1	EMBL	gene	1049518	1050237	.	-	.	ID=gene947;Name=YPO0951;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0951
AL590842.1	EMBL	CDS	1049518	1050237	.	-	0	ID=cds926;Parent=gene947;Dbxref=GOA:Q8ZHE9,InterPro:IPR003358,InterPro:IPR029063,NCBI_GP:CAL19617.1;Name=CAL19617.1;Note=Similar to Escherichia coli hypothetical protein YggH SW:YGGH_ECOLI (P32049) (239 aa) fasta scores: E(): 0%2C80.2%25 id in 237 aa%2C and to Vibrio cholerae hypothetical protein VC0453 TR:Q9KUR2 (EMBL:AE004132) (239 aa) fasta scores: E(): 0%2C 65.0%25 id in 237 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004132;product=Putative methyltransferase;protein_id=CAL19617.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1049524	1050114	.	-	.	ID=id2165;Note=Pfam match to entry PF02390 Methyltransf_4%2C %2C score 326.50%2C E-value 3.1e-94;gbkey=misc_feature;inference=protein motif:PF02390
AL590842.1	EMBL	gene	1050575	1051690	.	+	.	ID=gene948;Name=mutB;gbkey=Gene;gene=mutB;gene_biotype=protein_coding;gene_synonym=mutY;locus_tag=YPO0952
AL590842.1	EMBL	CDS	1050575	1051690	.	+	0	ID=cds927;Parent=gene948;Dbxref=GOA:Q0WI90,InterPro:IPR000445,InterPro:IPR003265,InterPro:IPR003583,InterPro:IPR003651,InterPro:IPR004035,InterPro:IPR004036,InterPro:IPR005760,InterPro:IPR011257,InterPro:IPR015797,InterPro:IPR023170,InterPro:IPR029119,UniProtKB/TrEMBL:Q0WI90,NCBI_GP:CAL19618.1;Name=CAL19618.1;Note=Similar to Escherichia coli A/G-specific adenine glycosylase MutY SW:MUTY_ECOLI (P17802) (350 aa) fasta scores: E(): 0%2C 75.9%25 id in 344 aa%2C and to Salmonella typhimurium A/G-specific adenine glycosylase MutY SW:MUTY_SALTY (Q05869) (350 aa) fasta scores: E(): 0%2C 74.1%25 id in 344 aa. CDS contains extra amino acids at the C-terminus. Comparison of the synteny of the Y. pestis chromosome in this region reveals a small insertion relative to E. coli and S. typhi.;gbkey=CDS;gene=mutB;product=A/G-specific adenine glycosylase;protein_id=CAL19618.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1050665	1051141	.	+	.	ID=id2166;Note=Pfam match to entry PF00730 HhH-GPD%2C HhH-GPD superfamily base excision DNA repair protein%2C score 221.10%2CE-value 1.6e-62;gbkey=misc_feature;gene=mutB;inference=protein motif:PF00730
AL590842.1	EMBL	sequence_feature	1051148	1051198	.	+	.	ID=id2167;Note=PS00764 Endonuclease III iron-sulfur binding region signature.;gbkey=misc_feature;gene=mutB;inference=protein motif:ProSite:PS00764
AL590842.1	EMBL	gene	1051868	1052140	.	+	.	ID=gene949;Name=YPO0953;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0953
AL590842.1	EMBL	CDS	1051868	1052140	.	+	0	ID=cds928;Parent=gene949;Dbxref=GOA:Q8ZHE7,InterPro:IPR007457,NCBI_GP:CAL19619.1;Name=CAL19619.1;Note=Similar to Escherichia coli hypothetical protein YggX SW:YGGX_ECOLI (P52065) (90 aa) fasta scores: E(): 8.7e-31%2C 82.0%25 id in 89 aa%2C and to Haemophilus influenzae hypothetical protein HI0760 SW:YGGX_HAEIN (P44048) (90 aa) fasta scores: E(): 1.9e-29%2C 74.2%25 id in 89 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19619.1;transl_table=11
AL590842.1	EMBL	gene	1052311	1053399	.	+	.	ID=gene950;Name=mltC;gbkey=Gene;gene=mltC;gene_biotype=protein_coding;locus_tag=YPO0954
AL590842.1	EMBL	CDS	1052311	1053399	.	+	0	ID=cds929;Parent=gene950;Dbxref=GOA:Q8ZHE6,InterPro:IPR000189,InterPro:IPR008258,InterPro:IPR023346,InterPro:IPR023664,InterPro:IPR024570,NCBI_GP:CAL19620.1;Name=CAL19620.1;Note=Similar to Escherichia coli membrane-bound lytic murein transglycosylase C MltC SW:MLTC_ECOLI (P52066) (359 aa) fasta scores: E(): 0%2C 77.7%25 id in 358 aa%2C and to Haemophilus influenzae membrane-bound lytic murein transglycosylase C Mltc SW:MLTC_HAEIN (P44049) (357 aa) fasta scores: E(): 0%2C 56.8%25 id in 359 aa;gbkey=CDS;gene=mltC;product=membrane-bound lytic murein transglycosylase C;protein_id=CAL19620.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1052341	1052373	.	+	.	ID=id2168;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=mltC;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	1052899	1053285	.	+	.	ID=id2169;Note=Pfam match to entry PF01464 SLT%2C Transglycosylase SLT domain%2C score 158.00%2C E-value 1.6e-43;gbkey=misc_feature;gene=mltC;inference=protein motif:PF01464
AL590842.1	EMBL	sequence_feature	1052956	1053042	.	+	.	ID=id2170;Note=PS00922 Prokaryotic transglycosylases signature.;gbkey=misc_feature;gene=mltC;inference=protein motif:ProSite:PS00922
AL590842.1	EMBL	gene	1053828	1054799	.	+	.	ID=gene951;Name=YPO0955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0955
AL590842.1	EMBL	CDS	1053828	1054799	.	+	0	ID=cds930;Parent=gene951;Dbxref=InterPro:IPR002491,UniProtKB/TrEMBL:Q74QI3,NCBI_GP:CAL19621.1;Name=CAL19621.1;Note=Weakly similar to internal regions of Pseudomonas aeruginosa periplasmic binding protein PhuT TR:O68879 (EMBL:AF055999) (297 aa) fasta scores: E(): 0.0054%2C 27.7%25 id in 256 aa%2C and Pyrococcus horikoshii hypothetical protein PH1237 TR:O58946 (EMBL:AP000005) (366 aa) fasta scores: E(): 0.0047%2C 26.5%25 id in 283 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP000005;product=hypothetical protein;protein_id=CAL19621.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1053828	1054634	.	+	.	ID=id2171;Note=Pfam match to entry PF01497 Peripla_BP_2%2CPeriplasmic binding protein%2C score 18.70%2C E-value 1.9e-05;gbkey=misc_feature;inference=protein motif:PF01497
AL590842.1	EMBL	gene	1054837	1056936	.	+	.	ID=gene952;Name=YPO0956;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0956
AL590842.1	EMBL	CDS	1054837	1056936	.	+	0	ID=cds931;Parent=gene952;Dbxref=GOA:Q0WI86,InterPro:IPR000531,InterPro:IPR010105,InterPro:IPR012910,UniProtKB/TrEMBL:Q0WI86,NCBI_GP:CAL19622.1;Name=CAL19622.1;Note=Similar to Pseudomonas aeruginosa hydroxamate-type ferrisiderophore receptor FiuA TR:O68595 (EMBL:AF051691) (802 aa) fasta scores: E(): 0%2C 28.2%25 id in 689 aa%2C and to Escherichia coli O157:H7 putative iron compound receptor Z4386 TR:AAG58168 (EMBL:AE005533) (713 aa) fasta scores: E(): 0%2C 44.9%25 id in 664 aa. Lack of similarity in the N-terminus%2C signal sequence containing region of the CDS.;gbkey=CDS;inference=similar to sequence:INSDC:AF051691;product=putative hydroxamate-type ferrisiderophore receptor;protein_id=CAL19622.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1054852	1054911	.	+	.	ID=id2172;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1056595	1056933	.	+	.	ID=id2173;Note=Pfam match to entry PF00593 TonB_boxC%2C TonB dependent receptor C-terminal region%2C score 74.40%2C E-value 2.5e-19;gbkey=misc_feature;inference=protein motif:PF00593
AL590842.1	EMBL	gene	1057019	1058038	.	-	.	ID=gene953;Name=YPO0957;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0957
AL590842.1	EMBL	CDS	1057019	1058038	.	-	0	ID=cds932;Parent=gene953;Dbxref=GOA:Q7CGR2,InterPro:IPR001851,UniProtKB/TrEMBL:Q7CGR2,NCBI_GP:CAL19623.1;Name=CAL19623.1;Note=Similar to Bacillus subtilis ribose transport system permease protein RbsC SW:RBSC_BACSU (P36948) (323 aa) fasta scores: E(): 0%2C 42.3%25 id in 298 aa%2C and to Vibrio cholerae possible ribose ABC transporter%2C permease protein VCA0129 TR:Q9KN36 (EMBL:AE004354) (332 aa) fasta scores: E(): 0%2C38.0%25 id in 329 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004354;product=putative sugar transport system permease protein;protein_id=CAL19623.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1057097	1057162	.	-	.	ID=id2174;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1057193	1057258	.	-	.	ID=id2175;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1057202	1057243	.	-	.	ID=id2176;Note=PS01039 Bacterial extracellular solute-binding proteins%2C family 3 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01039
AL590842.1	EMBL	sequence_feature	1057280	1057333	.	-	.	ID=id2177;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1057439	1057504	.	-	.	ID=id2178;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1057565	1057630	.	-	.	ID=id2179;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1057661	1057726	.	-	.	ID=id2180;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1057748	1057813	.	-	.	ID=id2181;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1057874	1057939	.	-	.	ID=id2182;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1058035	1059534	.	-	.	ID=gene954;Name=mglA;gbkey=Gene;gene=mglA;gene_biotype=protein_coding;gene_synonym=rbsA;locus_tag=YPO0958
AL590842.1	EMBL	CDS	1058035	1059534	.	-	0	ID=cds933;Parent=gene954;Dbxref=GOA:Q7CGR1,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CGR1,NCBI_GP:CAL19624.1;Name=CAL19624.1;Note=Similar to Escherichia coli galactoside transport ATP-binding protein MglA SW:MGLA_ECOLI (P23199) (506 aa) fasta scores: E(): 0%2C 42.0%25 id in 493 aa%2C and to Bacillus halodurans ribose ABC transporter RbsA TR:Q9K6J9 (EMBL:AP001519) (499 aa) fasta scores: E(): 0%2C 45.6%25 id in 489 aa;gbkey=CDS;gene=mglA;inference=similar to sequence:INSDC:AP001519;product=putative sugar transport ATP-binding protein;protein_id=CAL19624.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1058119	1058700	.	-	.	ID=id2183;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 90.60%2C E-value 3.2e-23;gbkey=misc_feature;gene=mglA;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1058302	1058346	.	-	.	ID=id2184;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=mglA;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	1058884	1059444	.	-	.	ID=id2185;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 181.10%2C E-value 1.7e-50;gbkey=misc_feature;gene=mglA;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1059400	1059423	.	-	.	ID=id2186;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=mglA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1059580	1060539	.	-	.	ID=gene955;Name=YPO0959;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0959
AL590842.1	EMBL	CDS	1059580	1060539	.	-	0	ID=cds934;Parent=gene955;Dbxref=InterPro:IPR025997,InterPro:IPR028082,UniProtKB/TrEMBL:Q7CGR0,NCBI_GP:CAL19625.1;Name=CAL19625.1;Note=Similar to Escherichia coli D-xylose-binding periplasmic protein precursor XylF SW:XYLF_ECOLI (P37387) (330 aa) fasta scores: E(): 8.7e-11%2C 25.0%25 id in 328 aa%2Cand to Thermotoga maritima possible ribose ABC transporter%2Cperiplasmic ribose-binding protein TM0958 TR:Q9X053 (EMBL:AE001759) (323 aa) fasta scores: E(): 1.8e-17%2C 28.0%25 id in 314 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE001759;product=putative sugar ABC transporter periplasmic binding protein;protein_id=CAL19625.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1059703	1060473	.	-	.	ID=id2187;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 12.50%2C E-value 2.7e-06;gbkey=misc_feature;inference=protein motif:PF00532
AL590842.1	EMBL	gene	1061095	1063257	.	-	.	ID=gene956;Name=speC;gbkey=Gene;gene=speC;gene_biotype=protein_coding;locus_tag=YPO0960
AL590842.1	EMBL	CDS	1061095	1063257	.	-	0	ID=cds935;Parent=gene956;Dbxref=GOA:Q7CGQ9,InterPro:IPR000310,InterPro:IPR005308,InterPro:IPR008286,InterPro:IPR011006,InterPro:IPR011193,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR027464,InterPro:IPR027568,UniProtKB/TrEMBL:Q7CGQ9,NCBI_GP:CAL19626.1;Name=CAL19626.1;Note=Similar to Escherichia coli constitutive ornithine decarboxylase SpeC SW:DCOR_ECOLI (P21169) (731 aa) fasta scores: E(): 0%2C 73.1%25 id in 718 aa%2C and to Vibrio cholerae inducible ornithine decarboxylase VCA1063 TR:Q9KKN9 (EMBL:AE004431) (720 aa) fasta scores: E(): 0%2C 72.4%25 id in 718 aa;gbkey=CDS;gene=speC;inference=similar to sequence:INSDC:AE004431;product=ornithine decarboxylase;protein_id=CAL19626.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1061122	1062939	.	-	.	ID=id2188;Note=Pfam match to entry PF01276 OKR_DC_1%2C Orn/Lys/Arg decarboxylase%2C score 1238.20%2C E-value 0;gbkey=misc_feature;gene=speC;inference=protein motif:PF01276
AL590842.1	EMBL	sequence_feature	1062166	1062210	.	-	.	ID=id2189;Note=PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site.;gbkey=misc_feature;gene=speC;inference=protein motif:ProSite:PS00703
AL590842.1	EMBL	tRNA	1063926	1064001	.	+	.	ID=rna15;Note=tRNA Phe anticodon GAA%2C Cove score 84.11;gbkey=tRNA;product=tRNA-Phe
AL590842.1	EMBL	exon	1063926	1064001	.	+	.	ID=id2190;Parent=rna15;Note=tRNA Phe anticodon GAA%2C Cove score 84.11;gbkey=tRNA;product=tRNA-Phe
AL590842.1	EMBL	gene	1064254	1064562	.	-	.	ID=gene957;Name=YPO0961;end_range=1064562,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0961;partial=true
AL590842.1	EMBL	CDS	1064254	1064562	.	-	0	ID=cds936;Parent=gene957;Dbxref=GOA:Q0WI81,InterPro:IPR002104,InterPro:IPR011010,InterPro:IPR013762,UniProtKB/TrEMBL:Q0WI81,NCBI_GP:CAL19627.1;Name=CAL19627.1;Note=Similar to internal fragments of Pseudomonas aeruginosa integrase XerC TR:AAG02084 (EMBL:AF285416) (427 aa) fasta scores: E(): 4e-13%2C 40.7%25 id in 91 aa%2C and Mycobacterium leprae integrase XerC TR:O33037 (EMBL:Z97369) (302 aa) fasta scores: E(): 0.0026%2C 34.3%25 id in 105 aa%3B~was marked partial;end_range=1064562,.;gbkey=CDS;inference=similar to sequence:INSDC:Z97369;partial=true;product=integrase (partial);protein_id=CAL19627.1;transl_table=11
AL590842.1	EMBL	gene	1064586	1065221	.	-	.	ID=gene958;Name=YPO0962;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0962
AL590842.1	EMBL	CDS	1064586	1065221	.	-	0	ID=cds937;Parent=gene958;Dbxref=InterPro:IPR018769,UniProtKB/TrEMBL:Q7CGQ8,NCBI_GP:CAL19628.1;Name=CAL19628.1;Note=no significant database hits to the full length CDS. Weakly similar to internal region of Pseudomonas aeruginosa conserved hypothetical protein PA0262 TR:AAG03651 (EMBL:AE004464) (1019 aa) fasta scores: E(): 3.8e-10%2C 28.4%25 id in 148 aa%2C and to the N-terminus of Neisseria meningitidis ribose 5-phosphate isomerase A RpiA TR:Q9JTM5 (EMBL:AL162756) (223 aa) fasta scores: E(): 1.6%2C 26.1%25 id in 138 aa. CDS is similar to YPO0967 (92.9%25 identity in 211 aa overlap) and to the C-terminal regions of YPO1472 (94.8%25 identity in 211 aa overlap)%2C YPO0970 (87.2%25 identity in 211 aa overlap) and YPO1475 (86.0%25 identity in 86 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AL162756;product=hypothetical protein;protein_id=CAL19628.1;transl_table=11
AL590842.1	EMBL	gene	1065829	1066185	.	-	.	ID=gene959;Name=insB;gbkey=Gene;gene=insB;gene_biotype=protein_coding;locus_tag=YPO0963
AL590842.1	EMBL	CDS	1065829	1066185	.	-	0	ID=cds938;Parent=gene959;Dbxref=GOA:Q0WI79,InterPro:IPR005063,UniProtKB/TrEMBL:Q0WI79,NCBI_GP:CAL19629.1;Name=CAL19629.1;Note=Similar to Erwinia herbicola putative transposase B TR:AAG53990 (EMBL:AF327446) (168 aa) fasta scores: E(): 0%2C81.4%25 id in 118 aa%2C and to Shigella sonnei insertion element IS1 protein InsB SW:ISB_SHISO (P19766) (131 aa) fasta scores: E(): 1.9e-21%2C 51.3%25 id in 117 aa. CDS is truncated at the N-terminus relative to the Erwinia herbicola protein. There is strong similarity to the Erwinia herbicola sequence upstream of the CDS%2C but there is no translational start. Conservation in the upstream sequence may be accounted for by the overlap with the upstream insertion sequence protein in both organisms (YPO0964 in Y. pestis and putative transposase A in Erwinia herbicola).;gbkey=CDS;gene=insB;inference=similar to sequence:INSDC:AF327446;product=insertion sequence protein;protein_id=CAL19629.1;transl_table=11
AL590842.1	EMBL	gene	1066251	1066526	.	-	.	ID=gene960;Name=insA;gbkey=Gene;gene=insA;gene_biotype=protein_coding;locus_tag=YPO0964
AL590842.1	EMBL	CDS	1066251	1066526	.	-	0	ID=cds939;Parent=gene960;Dbxref=GOA:Q0WI78,InterPro:IPR003220,InterPro:IPR024431,UniProtKB/TrEMBL:Q0WI78,NCBI_GP:CAL19630.1;Name=CAL19630.1;Note=Similar to Erwinia herbicola putative transposase A TR:AAG53989 (EMBL:AF327446) (91 aa) fasta scores: E(): 1.1e-29%2C 84.6%25 id in 91 aa%2C and to Shigella dysenteriae insertion element IS1 protein InsA TR:AAF28118 (EMBL:AF153317) (90 aa) fasta scores: E(): 5.9e-17%2C 55.6%25 id in 90 aa. CDS is similar to YPO0968 (97.8%25 identity in 91 aa overlap).;gbkey=CDS;gene=insA;inference=similar to sequence:INSDC:AF327446;product=insertion sequence protein;protein_id=CAL19630.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1066272	1066337	.	-	.	ID=id2191;Note=Predicted helix-turn-helix motif with score 1231 (+3.38 SD) at aa 64-85%2C sequence AGIRDTARALHISINAVMRTLK;gbkey=misc_feature;gene=insA
AL590842.1	EMBL	gene	1066622	1067371	.	-	.	ID=gene961;Name=YPO0965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0965
AL590842.1	EMBL	CDS	1066622	1067371	.	-	0	ID=cds940;Parent=gene961;Dbxref=UniProtKB/TrEMBL:Q0WI77,NCBI_GP:CAL19631.1;Name=CAL19631.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19631.1;transl_table=11
AL590842.1	EMBL	gene	1067376	1069673	.	-	.	ID=gene962;Name=YPO0966;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0966
AL590842.1	EMBL	CDS	1067376	1069673	.	-	0	ID=cds941;Parent=gene962;Dbxref=GOA:Q7CGQ7,InterPro:IPR011055,InterPro:IPR016047,InterPro:IPR023346,UniProtKB/TrEMBL:Q7CGQ7,NCBI_GP:CAL19632.1;Name=CAL19632.1;Note=No significant database matches to the full length CDS. Some similarity to internal region of Staphylococcus carnosus hydroxyethylthiazole kinase ThiM SW:THIM_STACA (Q9RGS6) (264 aa) fasta scores: E(): 8.5%2C 30.2%25 id in 106 aa. CDS is similar to YPO1473 (83.2%25 identity in 768 aa overlap).;gbkey=CDS;product=putative kinase;protein_id=CAL19632.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1069293	1069370	.	-	.	ID=id2192;Note=PS00107 Protein kinases ATP-binding region signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00107
AL590842.1	EMBL	gene	1069689	1070324	.	-	.	ID=gene963;Name=YPO0967;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0967
AL590842.1	EMBL	CDS	1069689	1070324	.	-	0	ID=cds942;Parent=gene963;Dbxref=InterPro:IPR018769,UniProtKB/TrEMBL:Q7CGQ6,NCBI_GP:CAL19633.1;Name=CAL19633.1;Note=no significant database hits. Full length CDS is similar to YPO0962 (92.9%25 identity in 211 aa overlap) and C-terminal regions of YPO1472 (97.2%25 identity in 211 aa overlap) and YPO0970 (90.0%25 identity in 211 aa overlap). C-terminus of CDS is similar to YPO1475 (79.1%25 identity in 86 aa overlap);gbkey=CDS;product=hypothetical protein;protein_id=CAL19633.1;transl_table=11
AL590842.1	EMBL	gene	1070859	1071191	.	-	.	ID=gene964;Name=YPO0967a;end_range=1071191,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0967a;partial=true;start_range=.,1070859
AL590842.1	EMBL	CDS	1070859	1071191	.	-	0	ID=cds943;Parent=gene964;Dbxref=GOA:Q7CGQ5,InterPro:IPR005063,UniProtKB/TrEMBL:Q7CGQ5,NCBI_GP:CAL19634.1;Name=CAL19634.1;Note=Similar to Erwinia herbicola putative transposase B TR:AAG53990 (EMBL:AF327446) (168 aa) fasta scores: E(): 1.3e-10%2C 76.7%25 id in 43 aa%2C and to Shigella sonnei insertion element IS1 protein InsB SW:ISB_SHISO (P19766) (131 aa) fasta scores: E(): 0.0014%2C 48.5%25 id in 33 aa%3B~was marked partial;end_range=1071191,.;gbkey=CDS;inference=similar to sequence:INSDC:AF327446;partial=true;product=insertion sequence protein (partial);protein_id=CAL19634.1;start_range=.,1070859;transl_table=11
AL590842.1	EMBL	gene	1071245	1071520	.	-	.	ID=gene965;Name=insA;gbkey=Gene;gene=insA;gene_biotype=protein_coding;locus_tag=YPO0968
AL590842.1	EMBL	CDS	1071245	1071520	.	-	0	ID=cds944;Parent=gene965;Dbxref=GOA:Q0WI73,InterPro:IPR003220,InterPro:IPR024431,UniProtKB/TrEMBL:Q0WI73,NCBI_GP:CAL19635.1;Name=CAL19635.1;Note=Similar to Erwinia herbicola putative transposase A TR:AAG53989 (EMBL:AF327446) (91 aa) fasta scores: E(): 3.3e-30%2C 83.5%25 id in 91 aa%2C and to Shigella dysenteriae insertion element IS1 protein InsA TR:AAF28138 (EMBL:AF153317) (90 aa) fasta scores: E(): 1.1e-17%2C 55.6%25 id in 90 aa;gbkey=CDS;gene=insA;inference=similar to sequence:INSDC:AF327446;product=insertion sequence protein;protein_id=CAL19635.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1071266	1071331	.	-	.	ID=id2193;Note=Predicted helix-turn-helix motif with score 1231 (+3.38 SD) at aa 64-85%2C sequence AGIRDTARALHISINAVMRTLK;gbkey=misc_feature;gene=insA
AL590842.1	EMBL	gene	1071907	1072287	.	-	.	ID=gene966;Name=YPO0968a;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0968a
AL590842.1	EMBL	CDS	1071907	1072287	.	-	0	ID=cds945;Parent=gene966;Dbxref=UniProtKB/TrEMBL:Q0WI72,NCBI_GP:CAL19636.1;Name=CAL19636.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19636.1;transl_table=11
AL590842.1	EMBL	gene	1072398	1074620	.	-	.	ID=gene967;Name=YPO0969;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0969
AL590842.1	EMBL	CDS	1072398	1074620	.	-	0	ID=cds946;Parent=gene967;Dbxref=InterPro:IPR023346,UniProtKB/TrEMBL:Q7CGQ4,NCBI_GP:CAL19637.1;Name=CAL19637.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19637.1;transl_table=11
AL590842.1	EMBL	gene	1074635	1076983	.	-	.	ID=gene968;Name=YPO0970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0970
AL590842.1	EMBL	CDS	1074635	1076983	.	-	0	ID=cds947;Parent=gene968;Dbxref=InterPro:IPR006531,InterPro:IPR006533,InterPro:IPR017847,InterPro:IPR018769,InterPro:IPR027440,InterPro:IPR028244,UniProtKB/TrEMBL:Q7CGQ3,NCBI_GP:CAL19638.1;Name=CAL19638.1;Note=Similar to Pseudomonas aeruginosa conserved hypothetical protein TR:AAG03485 (EMBL:AE004448) (741 aa) fasta scores: E(): 3.9e-22%2C 24.1%25 id in 771 aa%2C and to the N-terminal region of Escherichia coli hypothetical protein VgrE TR:O52660 (EMBL:AF044499) (702 aa) fasta scores: E(): 1.5e-19%2C 22.1%25 id in 721 aa. Similar to YPO1472 (94.6%25 identity in 782 aa overlap)%2C YPO0962 (87.2%25 identity in 211 aa overlap) and YPO0967 (90.0%25 identity in 211 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AF044499;product=conserved hypothetical protein;protein_id=CAL19638.1;transl_table=11
AL590842.1	EMBL	gene	1076980	1079628	.	-	.	ID=gene969;Name=clpB3;gbkey=Gene;gene=clpB3;gene_biotype=protein_coding;locus_tag=YPO0971
AL590842.1	EMBL	CDS	1076980	1079628	.	-	0	ID=cds948;Parent=gene969;Dbxref=GOA:Q7CGQ2,InterPro:IPR001270,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR017729,InterPro:IPR018368,InterPro:IPR019489,InterPro:IPR023150,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CGQ2,NCBI_GP:CAL19639.1;Name=CAL19639.1;Note=Similar to Escherichia coli ClpB protein%2C which is thought to form part of a multi-chaperone system supressing protein aggregation%2C SW:CLPB_ECOLI (P03815) (857 aa) fasta scores: E(): 0%2C 39.4%25 identity in 872 aa overlap and Yersinia enterocolitica Clp protease-associated protein ClpB TR:AAG00524 (EMBL:AF285784) (890 aa) fasta scores: E(): 0%2C 43.2%25 id in 876 aa. Similar to YPO1471 (95.0%25 identity in 879 aa overlap);gbkey=CDS;gene=clpB3;inference=similar to sequence:INSDC:AF285784;product=Clp ATPase;protein_id=CAL19639.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1077124	1077789	.	-	.	ID=id2194;Note=Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA)%2C score 0.10%2C E-value 0.0014;gbkey=misc_feature;gene=clpB3;inference=protein motif:PF00004
AL590842.1	EMBL	sequence_feature	1077751	1077774	.	-	.	ID=id2195;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=clpB3;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1078336	1078920	.	-	.	ID=id2196;Note=Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA)%2C score 42.80%2CE-value 7.5e-09;gbkey=misc_feature;gene=clpB3;inference=protein motif:PF00004
AL590842.1	EMBL	sequence_feature	1078603	1078641	.	-	.	ID=id2197;Note=PS00870 Chaperonins clpA/B signature 1.;gbkey=misc_feature;gene=clpB3;inference=protein motif:ProSite:PS00870
AL590842.1	EMBL	sequence_feature	1078882	1078905	.	-	.	ID=id2198;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=clpB3;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1080046	1080537	.	-	.	ID=gene970;Name=YPO0973;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0973
AL590842.1	EMBL	CDS	1080046	1080537	.	-	0	ID=cds949;Parent=gene970;Dbxref=InterPro:IPR008514,UniProtKB/TrEMBL:Q7CHN3,NCBI_GP:CAL19640.1;Name=CAL19640.1;Note=Similar to Vibrio cholerae secreted hydrophilic protein VC1415 TR:P72350 (EMBL:S81006) (172 aa) fasta scores: E(): 3.9e-18%2C 37.8%25 id in 143 aa%2C and to Pseudomonas aeruginosa probable secreted protein HcpC TR:AAG03652 (EMBL:AE004464) (172 aa) fasta scores: E(): 1.6e-17%2C 35.5%25 id in 166 aa. Identical to YPO1470.;gbkey=CDS;inference=similar to sequence:INSDC:S81006;product=conserved hypothetical protein;protein_id=CAL19640.1;transl_table=11
AL590842.1	EMBL	gene	1080541	1082277	.	-	.	ID=gene971;Name=YPO0974;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0974
AL590842.1	EMBL	CDS	1080541	1082277	.	-	0	ID=cds950;Parent=gene971;Dbxref=InterPro:IPR006665,UniProtKB/TrEMBL:Q7CHN2,NCBI_GP:CAL19641.1;Name=CAL19641.1;Note=No significant database matches to the full length CDS. Similar to C-terminus of Pseudomonas fluorescens major outer-membrane protein OprF TR:Q51780 (EMBL:L21200) (317 aa) fasta scores: E(): 2.2e-08%2C 37.1%25 id in 159 aa. Almost identical to YPO1469 (99.5%25 identity in 578 aa overlap).;gbkey=CDS;inference=similar to sequence:INSDC:L21200;product=putative OmpA-family membrane protein;protein_id=CAL19641.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1080649	1080939	.	-	.	ID=id2199;Note=Pfam match to entry PF00691 OmpA%2C OmpA family%2C score 57.20%2C E-value 3.7e-13;gbkey=misc_feature;inference=protein motif:PF00691
AL590842.1	EMBL	sequence_feature	1082185	1082250	.	-	.	ID=id2200;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1082277	1082963	.	-	.	ID=gene972;Name=YPO0975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0975
AL590842.1	EMBL	CDS	1082277	1082963	.	-	0	ID=cds951;Parent=gene972;Dbxref=InterPro:IPR017732,UniProtKB/TrEMBL:Q7CHN1,NCBI_GP:CAL19642.1;Name=CAL19642.1;Note=Similar to Vibrio cholerae hypothetical protein VCA0115 TR:Q9KN50 (EMBL:AE004353) (257 aa) fasta scores: E(): 3.1e-05%2C 25.2%25 id in 206 aa. Identical to YPO1468.;gbkey=CDS;inference=similar to sequence:INSDC:AE004353;product=putative membrane protein;protein_id=CAL19642.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1082328	1082384	.	-	.	ID=id2201;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1082960	1084312	.	-	.	ID=gene973;Name=YPO0976;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0976
AL590842.1	EMBL	CDS	1082960	1084312	.	-	0	ID=cds952;Parent=gene973;Dbxref=InterPro:IPR010263,UniProtKB/TrEMBL:Q7CHN0,NCBI_GP:CAL19643.1;Name=CAL19643.1;Note=Similar to Vibrio cholerae hypothetical protein VCA0114 TR:Q9KN51 (EMBL:AE004353) (444 aa) fasta scores: E(): 6.8e-31%2C 27.8%25 id in 449 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0079 TR:AAG03469 (EMBL:AE004447) (444 aa) fasta scores: E(): 6.6e-30%2C 28.7%25 id in 449 aa. Almost identical to YPO1467 (98.9%25 identity in 450 aa overlap).;gbkey=CDS;inference=similar to sequence:INSDC:AE004447;product=conserved hypothetical protein;protein_id=CAL19643.1;transl_table=11
AL590842.1	EMBL	gene	1084324	1085868	.	-	.	ID=gene974;Name=YPO0977;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0977
AL590842.1	EMBL	CDS	1084324	1085868	.	-	0	ID=cds953;Parent=gene974;Dbxref=InterPro:IPR010269,UniProtKB/TrEMBL:Q7CHM9,NCBI_GP:CAL19644.1;Name=CAL19644.1;Note=Similar to the C-terminal regions of Vibrio cholerae hypothetical protein VCA0108 TR:Q9KN57 (EMBL:AE004353) (492 aa) fasta scores: E(): 0%2C 43.4%25 id in 488 aa%2C and Pseudomonas aeruginosa conserved hypothetical protein PA1658 TR:AAG05047 (EMBL:AE004593) (491 aa) fasta scores: E(): 0%2C 43.3%25 id in 450 aa. Almost identical to YPO1466 (98.8%25 identity in 516 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AE004593;product=conserved hypothetical protein;protein_id=CAL19644.1;transl_table=11
AL590842.1	EMBL	gene	1085911	1086411	.	-	.	ID=gene975;Name=YPO0978;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0978
AL590842.1	EMBL	CDS	1085911	1086411	.	-	0	ID=cds954;Parent=gene975;Dbxref=InterPro:IPR008312,UniProtKB/TrEMBL:Q0WI63,NCBI_GP:CAL19645.1;Name=CAL19645.1;Note=Similar to Vibrio cholerae hypothetical protein VCA0107 TR:Q9KN58 (EMBL:AE004353) (168 aa) fasta scores: E(): 9.8e-18%2C 41.0%25 id in 156 aa%2C and to Pseudomonas aeruginosa conserved hypothetical protein PA1657 TR:AAG05046 (EMBL:AE004593) (168 aa) fasta scores: E(): 1.2e-18%2C 39.2%25 id in 158 aa. Almost identical to YPO1465 (97.6%25 identity in 166 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AE004593;product=conserved hypothetical protein;protein_id=CAL19645.1;transl_table=11
AL590842.1	EMBL	gene	1087599	1087768	.	-	.	ID=gene976;Name=YPO0979;end_range=1087768,.;gbkey=Gene;gene_biotype=other;locus_tag=YPO0979;partial=true;start_range=.,1087599
AL590842.1	EMBL	mRNA	1087599	1087768	.	-	.	ID=rna16;Parent=gene976;Note=Probable gene remnant%2C similar to N-terminal region of Erwinia herbicola putative transposase A TR:AAG53989 (EMBL:AF327446) (91 aa) fasta scores: E(): 4.3e-10%2C 63.2%25 id in 57 aa%2C and Shigella dysenteriae insertion element iso-IS1N protein InsA SW:ISA2_SHIDY (P03829) (90 aa) fasta scores: E(): 0.00048%2C 43.4%25 id in 53 aa%3B~was marked partial;end_range=1087768,.;gbkey=mRNA;inference=similar to sequence:INSDC:AF327446;partial=true;product=insertion element protein (partial);start_range=.,1087599
AL590842.1	EMBL	exon	1087599	1087768	.	-	.	ID=id2202;Parent=rna16;Note=Probable gene remnant%2C similar to N-terminal region of Erwinia herbicola putative transposase A TR:AAG53989 (EMBL:AF327446) (91 aa) fasta scores: E(): 4.3e-10%2C 63.2%25 id in 57 aa%2C and Shigella dysenteriae insertion element iso-IS1N protein InsA SW:ISA2_SHIDY (P03829) (90 aa) fasta scores: E(): 0.00048%2C 43.4%25 id in 53 aa%3B~was marked partial;end_range=1087768,.;gbkey=mRNA;inference=similar to sequence:INSDC:AF327446;partial=true;product=insertion element protein (partial);start_range=.,1087599
AL590842.1	EMBL	gene	1087811	1088155	.	-	.	ID=gene977;Name=YPO0980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0980
AL590842.1	EMBL	CDS	1087811	1088155	.	-	0	ID=cds955;Parent=gene977;Dbxref=UniProtKB/TrEMBL:Q0WI62,NCBI_GP:CAL19646.1;Name=CAL19646.1;Note=Very weak similarity to Sheep pulmonary adenomatosis virus (Jaagsiekte sheep retrovirus) OrfX TR:Q9IC99 (EMBL:AF128922) (166 aa) fasta scores: E(): 0.19%2C 29.204%25 id in 113 aa%2C and to Ovis aries OrfX Pol TR:AAK38687 (EMBL:AF357971) (179 aa) fasta scores: E(): 1.1%2C 27.434%25 id in 113 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF357971;product=putative phage protein (partial);protein_id=CAL19646.1;transl_table=11
AL590842.1	EMBL	gene	1088261	1088320	.	-	.	ID=gene978;Name=insB;end_range=1088320,.;gbkey=Gene;gene=insB;gene_biotype=protein_coding;locus_tag=YPO0980A;partial=true;start_range=.,1088261
AL590842.1	EMBL	CDS	1088261	1088320	.	-	0	ID=cds956;Parent=gene978;Dbxref=GOA:Q0WI61,InterPro:IPR005063,UniProtKB/TrEMBL:Q0WI61,NCBI_GP:CAL19647.1;Name=CAL19647.1;Note=Probable gene remnant%2C similar to N-terminal regions of Shigella dysenteriae insertion element protein InsB TR:Q9LA39 (EMBL:AF153317) (131 aa) fasta scores: E(): 4.4e-08%2C 85.0%25 id in 20 aa%2C and Escherichia coli insertion element protein InsB TR:Q9S104 (EMBL:AB024946) (131 aa) fasta scores: E(): 4.4e-07%2C 75.0%25 id in 20 aa%3B~was marked partial;end_range=1088320,.;gbkey=CDS;gene=insB;inference=similar to sequence:INSDC:AF153317;partial=true;product=insertion element protein (partial);protein_id=CAL19647.1;start_range=.,1088261;transl_table=11
AL590842.1	EMBL	gene	1088356	1088619	.	-	.	ID=gene979;Name=insA;gbkey=Gene;gene=insA;gene_biotype=protein_coding;locus_tag=YPO0981
AL590842.1	EMBL	CDS	1088356	1088619	.	-	0	ID=cds957;Parent=gene979;Dbxref=GOA:Q0WI60,InterPro:IPR003220,InterPro:IPR024431,UniProtKB/TrEMBL:Q0WI60,NCBI_GP:CAL19648.1;Name=CAL19648.1;Note=Similar to Shigella dysenteriae insertion element iso-IS1N protein InsA SW:ISA2_SHIDY (P03829) (90 aa) fasta scores: E(): 5.7e-26%2C 75.6%25 id in 86 aa%2C and to Escherichia coli insertion element protein InsA TR:Q9S103 (EMBL:AB024946) (90 aa) fasta scores: E(): 7.7e-25%2C 74.4%25 id in 86 aa. Similar to YPO0964 (50.6%25 identity in 87 aa overlap) and YPO0968 (50.6%25 identity in 87 aa overlap).;gbkey=CDS;gene=insA;inference=similar to sequence:INSDC:AB024946;product=insertion element protein;protein_id=CAL19648.1;transl_table=11
AL590842.1	EMBL	gene	1088687	1089082	.	-	.	ID=gene980;Name=YPO0982;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0982
AL590842.1	EMBL	CDS	1088687	1089082	.	-	0	ID=cds958;Parent=gene980;Dbxref=UniProtKB/TrEMBL:Q7CGP5,NCBI_GP:CAL19649.1;Name=CAL19649.1;Note=No significant database matches;gbkey=CDS;product=putative lipoprotein;protein_id=CAL19649.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1089020	1089052	.	-	.	ID=id2203;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	1089533	1090183	.	-	.	ID=gene981;Name=YPO0983;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0983
AL590842.1	EMBL	CDS	1089533	1090183	.	-	0	ID=cds959;Parent=gene981;Dbxref=GOA:Q7CGP4,InterPro:IPR003675,UniProtKB/TrEMBL:Q7CGP4,NCBI_GP:CAL19650.1;Name=CAL19650.1;Note=Similar to Escherichia coli hypothetical protein YprA SW:YPRA_ECOLI (P13974) (217 aa) fasta scores: E(): 2.1e-08%2C 27.9%25 id in 201 aa%2C and to Bacillus anthracis hypothetical protein TR:Q9RMY6 (EMBL:AF188935) (221 aa) fasta scores: E(): 0.014%2C 28.4%25 id in 208 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF188935;product=putative membrane protein;protein_id=CAL19650.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1089539	1089604	.	-	.	ID=id2204;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1089665	1089730	.	-	.	ID=id2205;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1089767	1089832	.	-	.	ID=id2206;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1089893	1089943	.	-	.	ID=id2207;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1090004	1090060	.	-	.	ID=id2208;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1090091	1090147	.	-	.	ID=id2209;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1091363	1092013	.	+	.	ID=gene982;Name=yspI;gbkey=Gene;gene=yspI;gene_biotype=protein_coding;locus_tag=YPO0984
AL590842.1	EMBL	CDS	1091363	1092013	.	+	0	ID=cds960;Parent=gene982;Dbxref=GOA:Q7CGP3,InterPro:IPR001690,InterPro:IPR016181,InterPro:IPR018311,UniProtKB/TrEMBL:Q7CGP3,NCBI_GP:CAL19651.1;Name=CAL19651.1;Note=Indentical to Yersinia pseudotuberculosis%2Cquorum-sensing signal generator%2C N-acylhomoserine lactone synthase%2C YspI TR:O85823 (EMBL:AF079136) (216 aa) fasta scores: E(): 0%2C 100.0%25 id in 216 aa%2C and similar to Yersinia ruckeri autoinducer synthesis protein YukI SW:YUKI_YERRU (O87970) (216 aa) fasta scores: E(): 0%2C 75.2%25 id in 214 aa%2C and to Yersinia pestis N-acylhomoserine lactone synthase YpeI TR:Q9RH44 (EMBL:AF071401) (214 aa) fasta scores: E(): 0%2C 46.9%25 id in 213 aa;gbkey=CDS;gene=yspI;inference=similar to sequence:INSDC:AF079136;product=N-acylhomoserine lactone synthase YspI;protein_id=CAL19651.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1091384	1091926	.	+	.	ID=id2210;Note=Pfam match to entry PF00765 Autoind_synth%2CAutoinducer synthetase%2C score 398.60%2C E-value 6e-116;gbkey=misc_feature;gene=yspI;inference=protein motif:PF00765
AL590842.1	EMBL	sequence_feature	1091429	1091506	.	+	.	ID=id2211;Note=PS00949 Autoinducers synthetases family signature.;gbkey=misc_feature;gene=yspI;inference=protein motif:ProSite:PS00949
AL590842.1	EMBL	gene	1091994	1092737	.	-	.	ID=gene983;Name=yspR;gbkey=Gene;gene=yspR;gene_biotype=protein_coding;locus_tag=YPO0985
AL590842.1	EMBL	CDS	1091994	1092737	.	-	0	ID=cds961;Parent=gene983;Dbxref=GOA:Q7CGP2,InterPro:IPR000792,InterPro:IPR005143,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:Q7CGP2,NCBI_GP:CAL19652.1;Name=CAL19652.1;Note=Similar to Yersinia pseudotuberculosis quorum-sensing transcriptional regulator YspR TR:O85822 (EMBL:AF079136) (247 aa) fasta scores: E(): 0%2C 99.6%25 id in 247 aa%2C to Yersinia ruckeri quorum-sensing transcriptional regulator YruR TR:AAG17669 (EMBL:AF274748) (247 aa) fasta scores: E(): 0%2C 69.9%25 id in 246 aa%2C and to Yersinia pestis quorum-sensing transcriptional regulator YpeR TR:Q9RH45 (EMBL:AF071401) (245 aa) fasta scores: E(): 0%2C 47.7%25 id in 239 aa;gbkey=CDS;gene=yspR;inference=similar to sequence:INSDC:AF274748;product=quorum-sensing transcriptional regulator;protein_id=CAL19652.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1092006	1092203	.	-	.	ID=id2212;Note=Pfam match to entry PF00196 GerE%2C Bacterial regulatory proteins%2C luxR family%2C score 49.70%2C E-value 6.5e-11;gbkey=misc_feature;gene=yspR;inference=protein motif:PF00196
AL590842.1	EMBL	sequence_feature	1092069	1092152	.	-	.	ID=id2213;Note=PS00622 Bacterial regulatory proteins%2C luxR family signature.;gbkey=misc_feature;gene=yspR;inference=protein motif:ProSite:PS00622
AL590842.1	EMBL	sequence_feature	1092084	1092149	.	-	.	ID=id2214;Note=Predicted helix-turn-helix motif with score 1900 (+5.66 SD) at aa 197-218%2C sequence KTYQEIAIITNITPRTVKYHIG;gbkey=misc_feature;gene=yspR
AL590842.1	EMBL	INVERTED	1092755	1092791	.	+	.	ID=id2215;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	INVERTED	1092915	1092966	.	+	.	ID=id2216;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1093299	1094675	.	+	.	ID=gene984;Name=YPO0986;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0986
AL590842.1	EMBL	CDS	1093299	1094675	.	+	0	ID=cds962;Parent=gene984;Dbxref=InterPro:IPR006311,InterPro:IPR029058,UniProtKB/TrEMBL:Q7CGP1,NCBI_GP:CAL19653.1;Name=CAL19653.1;Note=No significant database matches to the full length CDS. Similar to Thermotoga maritima hypothetical protein TM0033 TR:Q9WXP0 (EMBL:AE001691) (395 aa) fasta scores: E(): 7.1e-13%2C 27.9%25 id in 427 aa. CDS contains an imperfect amino acid repeat (KDYSPD x3) residues 207 to 224.;gbkey=CDS;inference=similar to sequence:INSDC:AE001691;product=putative exported protein;protein_id=CAL19653.1;transl_table=11
AL590842.1	EMBL	gene	1095052	1095885	.	+	.	ID=gene985;Name=YPO0987;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0987
AL590842.1	EMBL	CDS	1095052	1095885	.	+	0	ID=cds963;Parent=gene985;Dbxref=GOA:Q7CGP0,InterPro:IPR000627,InterPro:IPR015889,UniProtKB/TrEMBL:Q7CGP0,NCBI_GP:CAL19654.1;Name=CAL19654.1;Note=no significant database hits to the full length CDS. Similar to internal regions of Streptomyces coelicolor putative dioxygenase SCH69.12 TR:Q9XA22 (EMBL:AL079308) (294 aa) fasta scores: E(): 0.003%2C 29.8%25 id in 198 aa%2C and Streptomyces protocatechuate 3%2C4-dioxygenase beta subunit PcaH TR:Q9ZFA1 (EMBL:AF109386) (257 aa) fasta scores: E(): 0.21%2C 25.9%25 id in 201 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL079308;product=putative exported protein;protein_id=CAL19654.1;transl_table=11
AL590842.1	EMBL	gene	1096175	1097398	.	-	.	ID=gene986;Name=YPO0988;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0988
AL590842.1	EMBL	CDS	1096175	1097398	.	-	0	ID=cds964;Parent=gene986;Dbxref=GOA:Q74QL4,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q74QL4,NCBI_GP:CAL19655.1;Name=CAL19655.1;Note=Similar to Shigella flexneri SHI-2 pathogenicity island protein ShiF TR:Q9XCH6 (EMBL:AF141323) (397 aa) fasta scores: E(): 0%2C 58.5%25 id in 381 aa%2C and to Deinococcus radiodurans possible drug transport protein DR2169 TR:Q9RSF5 (EMBL:AE002050) (441 aa) fasta scores: E(): 2.7e-11%2C 25.4%25 id in 409 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF141323;product=putative membrane protein;protein_id=CAL19655.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1096214	1096264	.	-	.	ID=id2217;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1096295	1096360	.	-	.	ID=id2218;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1096397	1096462	.	-	.	ID=id2219;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1096475	1096540	.	-	.	ID=id2220;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1096556	1096621	.	-	.	ID=id2221;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1096667	1096732	.	-	.	ID=id2222;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1096796	1096852	.	-	.	ID=id2223;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1096868	1096933	.	-	.	ID=id2224;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1096970	1097035	.	-	.	ID=id2225;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1097081	1097146	.	-	.	ID=id2226;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1097183	1097239	.	-	.	ID=id2227;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1097270	1097335	.	-	.	ID=id2228;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	pseudogene	1097538	1099306	.	+	.	ID=gene987;Name=iucA;gbkey=Gene;gene=iucA;gene_biotype=pseudogene;locus_tag=YPO0989;pseudo=true
AL590842.1	EMBL	CDS	1097538	1099306	.	+	0	ID=cds965;Parent=gene987;Note=Similar to Escherichia coli aerobactin siderophore biosynthesis protein IucA SW:IUCA_ECOLI (Q47316) (575 aa) fasta scores: E(): 0%2C 61.1%25 id in 584 aa%2C and to Shigella flexneri SHI-2 pathogenicity island protein IucA TR:Q9XCH4 (EMBL:AF141323) (593 aa) fasta scores: E(): 0%2C 63.0%25 id in 583 aa. Contains a frameshift after codon 180. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=iucA;inference=similar to sequence:INSDC:AF141323;product=putative siderophore biosynthesis protein IucA (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	1099293	1100243	.	+	.	ID=gene988;Name=iucB;gbkey=Gene;gene=iucB;gene_biotype=protein_coding;locus_tag=YPO0991
AL590842.1	EMBL	CDS	1099293	1100243	.	+	0	ID=cds966;Parent=gene988;Dbxref=GOA:Q7CGN9,InterPro:IPR016181,InterPro:IPR019432,UniProtKB/TrEMBL:Q7CGN9,NCBI_GP:CAL19657.1;Name=CAL19657.1;Note=Similar to Escherichia coli aerobactin siderophore biosynthesis protein IucB SW:IUCB_ECOLI (Q47317) (315 aa) fasta scores: E(): 0%2C 62.8%25 id in 312 aa%2C and to Shigella flexneri SHI-2 pathogenicity island protein IucB TR:Q9XCH3 (EMBL:AF141323) (315 aa) fasta scores: E(): 0%2C 65.0%25 id in 309 aa;gbkey=CDS;gene=iucB;inference=similar to sequence:INSDC:AF141323;product=putative siderophore biosynthesis protein IucB;protein_id=CAL19657.1;transl_table=11
AL590842.1	EMBL	gene	1100240	1101988	.	+	.	ID=gene989;Name=iucC;gbkey=Gene;gene=iucC;gene_biotype=protein_coding;locus_tag=YPO0992
AL590842.1	EMBL	CDS	1100240	1101988	.	+	0	ID=cds967;Parent=gene989;Dbxref=GOA:Q7CGN8,InterPro:IPR007310,InterPro:IPR022770,UniProtKB/TrEMBL:Q7CGN8,NCBI_GP:CAL19658.1;Name=CAL19658.1;Note=Similar to Escherichia coli aerobactin siderophore biosynthesis protein IucC SW:IUCC_ECOLI (Q47318) (580 aa) fasta scores: E(): 0%2C 65.8%25 id in 576 aa%2C and to Shigella flexneri SHI-2 pathogenicity island protein IucC TR:Q9XCH2 (EMBL:AF141323) (580 aa) fasta scores: E(): 0%2C 65.3%25 id in 576 aa;gbkey=CDS;gene=iucC;inference=similar to sequence:INSDC:AF141323;product=putative siderophore biosynthesis protein IucC;protein_id=CAL19658.1;transl_table=11
AL590842.1	EMBL	gene	1101985	1103313	.	+	.	ID=gene990;Name=iucD;gbkey=Gene;gene=iucD;gene_biotype=protein_coding;locus_tag=YPO0993
AL590842.1	EMBL	CDS	1101985	1103313	.	+	0	ID=cds968;Parent=gene990;Dbxref=GOA:Q7CGN7,InterPro:IPR025700,UniProtKB/TrEMBL:Q7CGN7,NCBI_GP:CAL19659.1;Name=CAL19659.1;Note=Similar to Escherichia coli L-lysine 6-monooxygenase%2C aerobactin biosynthetic protein IucD SW:IUCD_ECOLI (P11295) (425 aa) fasta scores: E(): 0%2C 59.8%25 id in 423 aa%2C and to Shigella flexneri SHI-2 pathogenicity island protein IucD TR:Q9XCH1 (EMBL:AF141323) (445 aa) fasta scores: E(): 0%2C 59.8%25 id in 433 aa;gbkey=CDS;gene=iucD;inference=similar to sequence:INSDC:AF141323;product=putative siderophore biosynthesis protein IucD;protein_id=CAL19659.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1102003	1102080	.	+	.	ID=id2229;Note=PS00217 Sugar transport proteins signature 2.;gbkey=misc_feature;gene=iucD;inference=protein motif:ProSite:PS00217
AL590842.1	EMBL	gene	1103385	1105565	.	+	.	ID=gene991;Name=iutA;gbkey=Gene;gene=iutA;gene_biotype=protein_coding;locus_tag=YPO0994
AL590842.1	EMBL	CDS	1103385	1105565	.	+	0	ID=cds969;Parent=gene991;Dbxref=GOA:Q7CGN6,InterPro:IPR000531,InterPro:IPR010105,InterPro:IPR010917,InterPro:IPR012910,UniProtKB/TrEMBL:Q7CGN6,NCBI_GP:CAL19660.1;Name=CAL19660.1;Note=Similar to Escherichia coli ferric aerobactin receptor precursor IutA SW:IUTA_ECOLI (P14542) (732 aa) fasta scores: E(): 0%2C 65.8%25 id in 730 aa%2C and to Shigella flexneri SHI-2 pathogenicity island protein IutA TR:Q9XCH0 (EMBL:AF141323) (732 aa) fasta scores: E(): 0%2C 66.0%25 id in 732 aa;gbkey=CDS;gene=iutA;inference=similar to sequence:INSDC:AF141323;product=putative ferric siderophore receptor;protein_id=CAL19660.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1105287	1105556	.	+	.	ID=id2230;Note=Pfam match to entry PF00593 TonB_boxC%2C TonB dependent receptor C-terminal region%2C score 45.50%2C E-value 2.8e-11;gbkey=misc_feature;gene=iutA;inference=protein motif:PF00593
AL590842.1	EMBL	sequence_feature	1105509	1105562	.	+	.	ID=id2231;Note=PS01156 TonB-dependent receptor proteins signature 2.;gbkey=misc_feature;gene=iutA;inference=protein motif:ProSite:PS01156
AL590842.1	EMBL	gene	1105824	1107257	.	-	.	ID=gene992;Name=YPO0995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0995
AL590842.1	EMBL	CDS	1105824	1107257	.	-	0	ID=cds970;Parent=gene992;Dbxref=GOA:Q7CGN5,InterPro:IPR001927,InterPro:IPR016196,UniProtKB/TrEMBL:Q7CGN5,NCBI_GP:CAL19661.1;Name=CAL19661.1;Note=Similar to Salmonella typhimurium melibiose permease MelB SW:MELB_SALTY (P30878) (476 aa) fasta scores: E(): 8.4e-25%2C 31.3%25 id in 451 aa%2C and to Bacillus subtilis hypothetical symporter YnaJ SW:YNAJ_BACSU (P94488) (463 aa) fasta scores: E(): 0%2C 31.5%25 id in 445 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=Sodium:galactoside symporter family protein;protein_id=CAL19661.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1105839	1106642	.	-	.	ID=id2232;Note=Pfam match to entry PF01236 Na_Galacto_symp%2CSodium:galactoside symporter family%2C score 147.50%2C E-value 2.3e-40;gbkey=misc_feature;inference=protein motif:PF01236
AL590842.1	EMBL	sequence_feature	1105914	1105979	.	-	.	ID=id2233;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1106010	1106075	.	-	.	ID=id2234;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1106151	1106216	.	-	.	ID=id2235;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1106247	1106297	.	-	.	ID=id2236;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1106319	1106384	.	-	.	ID=id2237;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1106415	1106480	.	-	.	ID=id2238;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1106568	1106633	.	-	.	ID=id2239;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1106664	1106720	.	-	.	ID=id2240;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1106784	1106849	.	-	.	ID=id2241;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1106880	1106930	.	-	.	ID=id2242;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1106994	1107059	.	-	.	ID=id2243;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1107072	1107137	.	-	.	ID=id2244;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1107456	1108917	.	+	.	ID=id2245;Note=IS1397-like insertion element: IS1661;gbkey=misc_feature
AL590842.1	EMBL	INVERTED	1107456	1107487	.	+	.	ID=id2246;Note=Inverted repeat for IS1661 insertion element;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1107499	1108035	.	+	.	ID=gene993;Name=YPO0996;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0996
AL590842.1	EMBL	CDS	1107499	1108035	.	+	0	ID=cds971;Parent=gene993;Dbxref=GOA:Q7CKI7,InterPro:IPR009057,InterPro:IPR010921,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CKI7,NCBI_GP:CAL19662.1;Name=CAL19662.1;Note=Similar to Escherichia coli insertion element IS1397 hypothetical protein SW:YI9A_ECOLI (Q47309) (173 aa) fasta scores: E(): 4.5e-21%2C 39.6%25 id in 169 aa%2C and to Lactobacillus johnsonii insertion element IS1223 hypothetical protein SW:YI3A_LACJO (Q48585) (177 aa) fasta scores: E(): 8.2e-11%2C 31.7%25 id in 164 aa;gbkey=CDS;product=insertion element IS1661 DNA-binding protein;protein_id=CAL19662.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1107577	1107642	.	+	.	ID=id2247;Note=Predicted helix-turn-helix motif with score 1691 (+4.95 SD) at aa 75-96%2C sequence ATLRETARQFSVGKSPLTRWIR;gbkey=misc_feature
AL590842.1	EMBL	gene	1108089	1108874	.	+	.	ID=gene994;Name=YPO0997;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0997
AL590842.1	EMBL	CDS	1108089	1108874	.	+	0	ID=cds972;Parent=gene994;Dbxref=GOA:Q7CKI6,InterPro:IPR001584,InterPro:IPR012337,InterPro:IPR025948,UniProtKB/TrEMBL:Q7CKI6,NCBI_GP:CAL19663.1;Name=CAL19663.1;Note=Similar to Escherichia coli insertion sequence IS1397 transposase%2C OrfB TR:Q47310 (EMBL:X92970) (240 aa) fasta scores: E(): 0%2C 53.0%25 id in 234 aa;gbkey=CDS;inference=similar to sequence:INSDC:X92970;product=transposase for insertion sequence IS1661;protein_id=CAL19663.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1108377	1108856	.	+	.	ID=id2248;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 141.50%2C E-value 9.6e-40;gbkey=misc_feature;inference=protein motif:PF00665
AL590842.1	EMBL	INVERTED	1108883	1108917	.	-	.	ID=id2249;Note=Inverted repeat for IS1661 insertion element;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1109070	1111436	.	-	.	ID=gene995;Name=YPO0998;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0998
AL590842.1	EMBL	CDS	1109070	1111436	.	-	0	ID=cds973;Parent=gene995;Dbxref=GOA:Q7CGN3,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR001610,InterPro:IPR001633,InterPro:IPR007892,InterPro:IPR013767,InterPro:IPR029787,UniProtKB/TrEMBL:Q7CGN3,NCBI_GP:CAL19664.1;Name=CAL19664.1;Note=Similar to Pseudomonas aeruginosa conserved hypothetical protein PA2072 TR:AAG05460 (EMBL:AE004634) (864 aa) fasta scores: E(): 0%2C 43.7%25 id in 773 aa%2C and to C-terminus of Pseudomonas aeruginosa conserved hypothetical protein PA4601 TR:AAG07989 (EMBL:AE004874) (1415 aa) fasta scores: E(): 0%2C 42.2%25 id in 460 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004874;product=putative membrane protein;protein_id=CAL19664.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1109106	1109834	.	-	.	ID=id2250;Note=Pfam match to entry PF00563 DUF2%2C Domain of unknown function 2%2C score 257.80%2C E-value 1.4e-73;gbkey=misc_feature;inference=protein motif:PF00563
AL590842.1	EMBL	sequence_feature	1109874	1110368	.	-	.	ID=id2251;Note=Pfam match to entry PF00990 DUF9%2C Domain of unknown function DUF9%2C score 204.60%2C E-value 1.5e-57;gbkey=misc_feature;inference=protein motif:PF00990
AL590842.1	EMBL	sequence_feature	1110378	1110503	.	-	.	ID=id2252;Note=Pfam match to entry PF00785 PAC%2C PAC motif%2C score 21.00%2C E-value 0.00025;gbkey=misc_feature;inference=protein motif:PF00785
AL590842.1	EMBL	sequence_feature	1110525	1110716	.	-	.	ID=id2253;Note=Pfam match to entry PF00989 PAS%2C PAS domain%2C score 20.10%2C E-value 0.00062;gbkey=misc_feature;inference=protein motif:PF00989
AL590842.1	EMBL	sequence_feature	1110783	1110848	.	-	.	ID=id2254;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1111440	1111637	.	-	.	ID=gene996;Name=YPO0999;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO0999
AL590842.1	EMBL	CDS	1111440	1111637	.	-	0	ID=cds974;Parent=gene996;Dbxref=UniProtKB/TrEMBL:Q0WI44,NCBI_GP:CAL19665.1;Name=CAL19665.1;Note=No significant database matches to the full length CDS. Similar to N-terminus of Synechocystis sp hypothetical protein SLR1601 TR:P72987 (EMBL:D90902) (125 aa) fasta scores: E(): 7.3%2C 29.5%25 id in 61 aa;gbkey=CDS;inference=similar to sequence:INSDC:D90902;product=putative membrane protein;protein_id=CAL19665.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1111500	1111565	.	-	.	ID=id2255;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1112076	1113353	.	+	.	ID=gene997;Name=YPO1000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1000
AL590842.1	EMBL	CDS	1112076	1113353	.	+	0	ID=cds975;Parent=gene997;Dbxref=GOA:Q7CGN2,InterPro:IPR006143,UniProtKB/TrEMBL:Q7CGN2,NCBI_GP:CAL19666.1;Name=CAL19666.1;Note=Similar to Escherichia coli acriflavin resistance protein A AcrA SW:ACRA_ECOLI (P31223) (397 aa) fasta scores: E(): 1.9e-31%2C 32.8%25 id in 348 aa%2C and to Pseudomonas aeruginosa multidrug efflux system protein MexE TR:P95421 (EMBL:X99514) (414 aa) fasta scores: E(): 2e-26%2C30.5%25 id in 370 aa;gbkey=CDS;inference=similar to sequence:INSDC:X99514;product=putative drug efflux protein;protein_id=CAL19666.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1112199	1112267	.	+	.	ID=id2256;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1112346	1113251	.	+	.	ID=id2257;Note=Pfam match to entry PF00529 HlyD%2C HlyD family secretion protein%2C score 75.20%2C E-value 1.4e-18;gbkey=misc_feature;inference=protein motif:PF00529
AL590842.1	EMBL	gene	1113366	1116485	.	+	.	ID=gene998;Name=YPO1001;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1001
AL590842.1	EMBL	CDS	1113366	1116485	.	+	0	ID=cds976;Parent=gene998;Dbxref=GOA:Q7CGN1,InterPro:IPR000731,InterPro:IPR001036,InterPro:IPR004764,InterPro:IPR027463,UniProtKB/TrEMBL:Q7CGN1,NCBI_GP:CAL19667.1;Name=CAL19667.1;Note=Many paralogues within Yersinia pestis eg. YPO3133 fasta scores: E(): 0%2C 40.1%25 identity in 1054 aa. Similar to Pseudomonas aeruginosa multidrug resistance protein MexB SW:MEXB_PSEAE (P52002) (1046 aa) fasta scores: E(): 0%2C40.3%25 id in 1046 aa%2C and to Campylobacter jejuni transmembrane efflux protein Cj0366c TR:Q9PID6 (EMBL:AL139075) (1040 aa) fasta scores: E(): 0%2C 38.5%25 id in 1037 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL139075;product=putative integral membrane efflux protein;protein_id=CAL19667.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1113366	1116431	.	+	.	ID=id2258;Note=Pfam match to entry PF00873 ACR_tran%2C AcrB/AcrD/AcrF family%2C score 1305.20%2C E-value 0;gbkey=misc_feature;inference=protein motif:PF00873
AL590842.1	EMBL	sequence_feature	1113402	1113461	.	+	.	ID=id2259;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1114386	1114445	.	+	.	ID=id2260;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1114464	1114532	.	+	.	ID=id2261;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1114542	1114610	.	+	.	ID=id2262;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1114683	1114751	.	+	.	ID=id2263;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1114794	1114862	.	+	.	ID=id2264;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1114968	1115027	.	+	.	ID=id2265;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1115952	1116020	.	+	.	ID=id2266;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1116039	1116107	.	+	.	ID=id2267;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1116120	1116188	.	+	.	ID=id2268;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1116264	1116332	.	+	.	ID=id2269;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1116360	1116428	.	+	.	ID=id2270;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1116620	1118110	.	-	.	ID=gene999;Name=YPO1002;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1002
AL590842.1	EMBL	CDS	1116620	1118110	.	-	0	ID=cds977;Parent=gene999;Dbxref=InterPro:IPR012927,UniProtKB/TrEMBL:Q7CGN0,NCBI_GP:CAL19668.1;Name=CAL19668.1;Note=N-terminal region similar to Escherichia coli shet2 enterotoxin SenA TR:Q47634 (EMBL:Z54194) (565 aa) fasta scores: E(): 2.3e-11%2C 29.1%25 id in 330 aa%2C and to Shigella flexneri shet2 enterotoxin SenA TR:Q47635 (EMBL:Z54211) (565 aa) fasta scores: E(): 2.3e-11%2C 29.4%25 id in 330 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z54211;product=enterotoxin-like protein;protein_id=CAL19668.1;transl_table=11
AL590842.1	EMBL	gene	1118388	1118975	.	+	.	ID=gene1000;Name=YPO1003;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1003
AL590842.1	EMBL	CDS	1118388	1118975	.	+	0	ID=cds978;Parent=gene1000;Dbxref=UniProtKB/TrEMBL:Q7CGM9,NCBI_GP:CAL19669.1;Name=CAL19669.1;Note=No significant database matches;gbkey=CDS;product=putative exported protein;protein_id=CAL19669.1;transl_table=11
AL590842.1	EMBL	gene	1119829	1130946	.	+	.	ID=gene1001;Name=yapH;gbkey=Gene;gene=yapH;gene_biotype=protein_coding;locus_tag=YPO1004
AL590842.1	EMBL	CDS	1119829	1130946	.	+	0	ID=cds979;Parent=gene1001;Dbxref=GOA:Q0WI39,InterPro:IPR005546,InterPro:IPR006315,InterPro:IPR011050,InterPro:IPR012332,InterPro:IPR024973,UniProtKB/TrEMBL:Q0WI39,NCBI_GP:CAL19670.1;Name=CAL19670.1;Note=Previously sequenced as Yersinia pestis YapH protein TR:CAC14227 (EMBL:AJ277631) (3705 aa) fasta scores: E(): 0%2C99.6%25 id in 3705 aa. Similar in regions to Escherichia coli YchA protein TR:Q9JMS3 (EMBL:AP001918) (1371 aa) fasta scores: E(): 0%2C 39.1%25 id in 1405 aa%2C and to Escherichia coli adhesin Aida-I precursor SW:AIDA_ECOLI (Q03155) (1286 aa) fasta scores: E(): 0%2C 29.2%25 id in 1286 aa. Contains a possible N-terminal signal sequence.;gbkey=CDS;gene=yapH;inference=similar to sequence:INSDC:AP001918;product=putative autotransporter protein;protein_id=CAL19670.1;transl_table=11
AL590842.1	EMBL	gene	1131049	1132929	.	-	.	ID=gene1002;Name=YPO1005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1005
AL590842.1	EMBL	CDS	1131049	1132929	.	-	0	ID=cds980;Parent=gene1002;Dbxref=GOA:Q7CGM8,InterPro:IPR001611,InterPro:IPR029487,UniProtKB/TrEMBL:Q7CGM8,NCBI_GP:CAL19671.1;Name=CAL19671.1;Note=Similar to neighbouring CDSs YPO1007 and YPO1006. Similar to Salmonella typhimurium leucine-rich repeat protein SlrP TR:Q9XCV2 (EMBL:AF127079) (765 aa) fasta scores: E(): 0%2C 39.0%25 id in 644 aa%2C and to Shigella flexneri 65.4 kDa antigen IpaH 4.5 SW:IPA4_SHIFL (P18009) (574 aa) fasta scores: E(): 0%2C 40.4%25 id in 589 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF127079;product=putative antigenic leucine-rich repeat protein;protein_id=CAL19671.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1132099	1132164	.	-	.	ID=id2271;Note=Pfam match to entry PF00560 LRR%2C Leucine Rich Repeat%2C score 9.30%2C E-value 44;gbkey=misc_feature;inference=protein motif:PF00560
AL590842.1	EMBL	sequence_feature	1132219	1132290	.	-	.	ID=id2272;Note=Pfam match to entry PF00560 LRR%2C Leucine Rich Repeat%2C score 12.80%2C E-value 8.4;gbkey=misc_feature;inference=protein motif:PF00560
AL590842.1	EMBL	sequence_feature	1132294	1132353	.	-	.	ID=id2273;Note=Pfam match to entry PF00560 LRR%2C Leucine Rich Repeat%2C score 10.40%2C E-value 30;gbkey=misc_feature;inference=protein motif:PF00560
AL590842.1	EMBL	sequence_feature	1132468	1132539	.	-	.	ID=id2274;Note=Pfam match to entry PF00560 LRR%2C Leucine Rich Repeat%2C score 17.30%2C E-value 0.36;gbkey=misc_feature;inference=protein motif:PF00560
AL590842.1	EMBL	sequence_feature	1132543	1132602	.	-	.	ID=id2275;Note=Pfam match to entry PF00560 LRR%2C Leucine Rich Repeat%2C score 12.90%2C E-value 7.8;gbkey=misc_feature;inference=protein motif:PF00560
AL590842.1	EMBL	gene	1133492	1134367	.	-	.	ID=gene1003;Name=YPO1006;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1006
AL590842.1	EMBL	CDS	1133492	1134367	.	-	0	ID=cds981;Parent=gene1003;Dbxref=InterPro:IPR001611,UniProtKB/TrEMBL:Q7CGM7,NCBI_GP:CAL19672.1;Name=CAL19672.1;Note=Similar to neighbouring CDSs YPO1005 and YPO1007. Similar to regions of Salmonella typhimurium secreted protein h2 TR:Q9RPH0 (EMBL:AF160727) (788 aa) fasta scores: E(): 2.5e-24%2C 41.9%25 id in 272 aa%2C and to regions of Yersinia pestis outer membrane protein YopM TR:O68701 (EMBL:AF053946) (409 aa) fasta scores: E(): 7e-23%2C 40.5%25 id in 259 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF160727;product=putative antigenic leucine-rich repeat protein;protein_id=CAL19672.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1133657	1133728	.	-	.	ID=id2276;Note=Pfam match to entry PF00560 LRR%2C Leucine Rich Repeat%2C score 15.40%2C E-value 1.3;gbkey=misc_feature;inference=protein motif:PF00560
AL590842.1	EMBL	sequence_feature	1133732	1133791	.	-	.	ID=id2277;Note=Pfam match to entry PF00560 LRR%2C Leucine Rich Repeat%2C score 9.30%2C E-value 43;gbkey=misc_feature;inference=protein motif:PF00560
AL590842.1	EMBL	sequence_feature	1133981	1134040	.	-	.	ID=id2278;Note=Pfam match to entry PF00560 LRR%2C Leucine Rich Repeat%2C score 11.30%2C E-value 22;gbkey=misc_feature;inference=protein motif:PF00560
AL590842.1	EMBL	sequence_feature	1134095	1134163	.	-	.	ID=id2279;Note=Pfam match to entry PF00560 LRR%2C Leucine Rich Repeat%2C score 9.40%2C E-value 43;gbkey=misc_feature;inference=protein motif:PF00560
AL590842.1	EMBL	gene	1134575	1136392	.	-	.	ID=gene1004;Name=YPO1007;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1007
AL590842.1	EMBL	CDS	1134575	1136392	.	-	0	ID=cds982;Parent=gene1004;Dbxref=GOA:Q7CGM6,InterPro:IPR001611,InterPro:IPR029487,UniProtKB/TrEMBL:Q7CGM6,NCBI_GP:CAL19673.1;Name=CAL19673.1;Note=Similar to neighbouring CDSs YPO1005 and YPO1006. Similar to Salmonella typhimurium leucine-rich repeat protein SlrP TR:Q9XCV2 (EMBL:AF127079) (765 aa) fasta scores: E(): 0%2C 36.9%25 id in 642 aa%2C and to Shigella flexneri 65.4 kDa antigen IpaH SW:IPA4_SHIFL (P18009) (574 aa) fasta scores: E(): 0%2C 40.4%25 id in 569 aa%2C and to Salmonella typhimurium secreted protein H2 TR:Q9RPH0 (EMBL:AF160727) (788 aa) fasta scores: E(): 0%2C 40.3%25 id in 608 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF160727;product=putative antigenic leucine-rich repeat protein;protein_id=CAL19673.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1135625	1135690	.	-	.	ID=id2280;Note=Pfam match to entry PF00560 LRR%2C Leucine Rich Repeat%2C score 13.70%2C E-value 4.6;gbkey=misc_feature;inference=protein motif:PF00560
AL590842.1	EMBL	sequence_feature	1135757	1135816	.	-	.	ID=id2281;Note=Pfam match to entry PF00560 LRR%2C Leucine Rich Repeat%2C score 10.80%2C E-value 26;gbkey=misc_feature;inference=protein motif:PF00560
AL590842.1	EMBL	sequence_feature	1135931	1136002	.	-	.	ID=id2282;Note=Pfam match to entry PF00560 LRR%2C Leucine Rich Repeat%2C score 17.30%2C E-value 0.36;gbkey=misc_feature;inference=protein motif:PF00560
AL590842.1	EMBL	sequence_feature	1136006	1136065	.	-	.	ID=id2283;Note=Pfam match to entry PF00560 LRR%2C Leucine Rich Repeat%2C score 9.90%2C E-value 36;gbkey=misc_feature;inference=protein motif:PF00560
AL590842.1	EMBL	sequence_feature	1136117	1136188	.	-	.	ID=id2284;Note=Pfam match to entry PF00560 LRR%2C Leucine Rich Repeat%2C score 10.00%2C E-value 34;gbkey=misc_feature;inference=protein motif:PF00560
AL590842.1	EMBL	gene	1137111	1138667	.	+	.	ID=gene1005;Name=YPO1008;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1008
AL590842.1	EMBL	CDS	1137111	1138667	.	+	0	ID=cds983;Parent=gene1005;Dbxref=GOA:Q74QP2,InterPro:IPR004697,UniProtKB/TrEMBL:Q74QP2,NCBI_GP:CAL19674.1;Name=CAL19674.1;Note=Similar to Vibrio cholerae hypothetical protein VC0863 TR:Q9KTN8 (EMBL:AE004171) (519 aa) fasta scores: E(): 0%2C 47.5%25 id in 512 aa%2C and to Neisseria gonorrhoeae putative efflux pump component MtrF TR:Q9RNX2 (EMBL:AF176820) (522 aa) fasta scores: E(): 0%2C 37.2%25 id in 524 aa%2C and to Escherichia coli arsenical pump membrane protein ArsB SW:ARB1_ECOLI (P08691) (429 aa) fasta scores: E(): 1.1%2C 26.1%25 id in 111 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF176820;product=putative integral membrane efflux protein;protein_id=CAL19674.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1137198	1137257	.	+	.	ID=id2285;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1137300	1137368	.	+	.	ID=id2286;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1137381	1137449	.	+	.	ID=id2287;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1137492	1137560	.	+	.	ID=id2288;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1137597	1137665	.	+	.	ID=id2289;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1137735	1137803	.	+	.	ID=id2290;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1137921	1137974	.	+	.	ID=id2291;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1138032	1138100	.	+	.	ID=id2292;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1138161	1138229	.	+	.	ID=id2293;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1138272	1138340	.	+	.	ID=id2294;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1138359	1138412	.	+	.	ID=id2295;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1138440	1138508	.	+	.	ID=id2296;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1138545	1138613	.	+	.	ID=id2297;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1138745	1139977	.	+	.	ID=gene1006;Name=YPO1009;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1009
AL590842.1	EMBL	CDS	1138745	1139977	.	+	0	ID=cds984;Parent=gene1006;Dbxref=GOA:Q8ZH96,InterPro:IPR001261,InterPro:IPR002933,InterPro:IPR010161,InterPro:IPR011650,NCBI_GP:CAL19675.1;Name=CAL19675.1;Note=Similar to Bacillus subtilis Peptidase T PepT SW:PEPT_BACSU (P55179) (410 aa) fasta scores: E(): 0%2C 39.6%25 id in 396 aa%2C and to Escherichia coli Peptidase T PepT SW:PEPT_ECOLI (P29745) (408 aa) fasta scores: E(): 0%2C 38.2%25 id in 408 aa;gbkey=CDS;product=probable peptidase;protein_id=CAL19675.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1138781	1139011	.	+	.	ID=id2298;Note=Pfam match to entry PF01546 Peptidase_M20%2C Peptidase family M20/M25/M40%2C score 19.30%2C E-value 0.00013;gbkey=misc_feature;inference=protein motif:PF01546
AL590842.1	EMBL	sequence_feature	1139171	1139425	.	+	.	ID=id2299;Note=Pfam match to entry PF01546 Peptidase_M20%2C Peptidase family M20/M25/M40%2C score 15.90%2C E-value 0.0012;gbkey=misc_feature;inference=protein motif:PF01546
AL590842.1	EMBL	sequence_feature	1139549	1139818	.	+	.	ID=id2300;Note=Pfam match to entry PF01546 Peptidase_M20%2C Peptidase family M20/M25/M40%2C score 15.90%2C E-value 0.0013;gbkey=misc_feature;inference=protein motif:PF01546
AL590842.1	EMBL	gene	1140365	1142437	.	+	.	ID=gene1007;Name=YPO1011;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1011
AL590842.1	EMBL	CDS	1140365	1142437	.	+	0	ID=cds985;Parent=gene1007;Dbxref=GOA:Q74QP1,InterPro:IPR000531,InterPro:IPR012910,UniProtKB/TrEMBL:Q74QP1,NCBI_GP:CAL19676.1;Name=CAL19676.1;Note=Similar to Azospirillum irakense putative outer membrane salicin receptor salC TR:Q9LAE4 (EMBL:AF143227) (726 aa) fasta scores: E(): 0%2C 25.3%25 id in 730 aa%2C and to Escherichia coli probable TonB-dependent receptor YncD SW:YNCD_ECOLI (P76115) (700 aa) fasta scores: E(): 2.1e-15%2C22.9%25 id in 721 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF143227;product=putative TonB-dependent outer membrane receptor;protein_id=CAL19676.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1140365	1140487	.	+	.	ID=id2301;Note=PS00430 TonB-dependent receptor proteins signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS00430
AL590842.1	EMBL	sequence_feature	1142117	1142434	.	+	.	ID=id2302;Note=Pfam match to entry PF00593 TonB_boxC%2C TonB dependent receptor C-terminal region%2C score 28.70%2C E-value 1.3e-06;gbkey=misc_feature;inference=protein motif:PF00593
AL590842.1	EMBL	pseudogene	1142618	1145928	.	+	.	ID=gene1008;Name=YPO1012;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO1012;pseudo=true
AL590842.1	EMBL	CDS	1142618	1145928	.	+	0	ID=cds986;Parent=gene1008;Note=This CDS is disrupted by the insertion of IS100 element. Similar to regions of polyketide synthases/peptide synthetases eg. Bacillus subtilis MycA TR:Q9R9J1 (EMBL:AF184956) (3971 aa) fasta scores: E(): 0%2C 29.5%25 id in 1112 aa%2C Streptomyces coelicolor polyketide synthase SC3f7.12 TR:O54155 (EMBL:AL021409) (2297 aa) fasta scores: E(): 0%2C 31.1%25 id in 1199 aa and Sorangium cellulosum polyketide synthase EpoC TR:Q9L8C7 (EMBL:AF210843) (7257 aa) fasta scores: E(): 0%2C 39.3%25 id in 499 aa.;gbkey=CDS;inference=similar to sequence:INSDC:AL021409;product=putative peptide/polyketide synthase subunit (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	1142705	1144051	.	+	.	ID=id2303;Note=Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%2C score -62.80%2C E-value 6.5e-12;gbkey=misc_feature;inference=protein motif:PF00501
AL590842.1	EMBL	sequence_feature	1144382	1144576	.	+	.	ID=id2304;Note=Pfam match to entry PF00550 pp-binding%2CPhosphopantetheine attachment site%2C score 29.50%2C E-value 1.5e-06;gbkey=misc_feature;inference=protein motif:PF00550
AL590842.1	EMBL	sequence_feature	1144637	1145854	.	+	.	ID=id2305;Note=Pfam match to entry PF00109 ketoacyl-synt%2CBeta-ketoacyl synthase%2C score 419.00%2C E-value 4.3e-122;gbkey=misc_feature;inference=protein motif:PF00109
AL590842.1	EMBL	sequence_feature	1145081	1145131	.	+	.	ID=id2306;Note=PS00606 Beta-ketoacyl synthases active site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00606
AL590842.1	EMBL	repeat_region	1145929	1147882	.	+	.	ID=id2307;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	1145929	1145956	.	+	.	ID=id2308;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1146015	1147037	.	+	.	ID=gene1009;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO1013
AL590842.1	EMBL	CDS	1146015	1147037	.	+	0	ID=cds987;Parent=gene1009;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL19678.1;Name=CAL19678.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL19678.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1146039	1146122	.	+	.	ID=id2309;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	sequence_feature	1146066	1146131	.	+	.	ID=id2310;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	1146360	1146893	.	+	.	ID=id2311;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	gene	1147034	1147816	.	+	.	ID=gene1010;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO1014
AL590842.1	EMBL	CDS	1147034	1147816	.	+	0	ID=cds988;Parent=gene1010;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL19679.1;Name=CAL19679.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL19679.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1147202	1147741	.	+	.	ID=id2312;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	1147361	1147384	.	+	.	ID=id2313;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	INVERTED	1147855	1147882	.	-	.	ID=id2314;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1147881	1148057	.	+	.	ID=gene1011;Name=YPO1014a;end_range=1148057,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1014a;partial=true;start_range=.,1147881
AL590842.1	EMBL	CDS	1147881	1148057	.	+	0	ID=cds989;Parent=gene1011;Dbxref=UniProtKB/TrEMBL:Q0WI30,NCBI_GP:CAL19680.1;Name=CAL19680.1;Note=Similar to the C-terminal regions of Escherichia coli prepilin peptidase dependent protein A PpdA SW:PPDA_ECOLI (P33554) (156 aa) fasta scores: E(): 0.00089%2C41.304%25 id in 46 aa%2C and Escherichia coli O157:H7 prepilin peptidase dependent protein A ECS3683 TR:BAB37106 (EMBL:AP002563) (156 aa) fasta scores: E(): 0.00089%2C41.304%25 id in 46 aa. Probable gene remnant resulting from insertion of the upstream IS element and recombination.%3B~was marked partial;end_range=1148057,.;gbkey=CDS;inference=similar to sequence:INSDC:AP002563;partial=true;product=prepilin peptidase (partial);protein_id=CAL19680.1;start_range=.,1147881;transl_table=11
AL590842.1	EMBL	gene	1148051	1148659	.	+	.	ID=gene1012;Name=YPO1015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1015
AL590842.1	EMBL	CDS	1148051	1148659	.	+	0	ID=cds990;Parent=gene1012;Dbxref=InterPro:IPR012902,InterPro:IPR016419,UniProtKB/TrEMBL:Q7CGZ7,NCBI_GP:CAL19681.1;Name=CAL19681.1;Note=Similar to Escherichia coli prepilin peptidase dependent protein B SW:PPDB_ECOLI (P08371) (187 aa) fasta scores: E(): 5e-17%2C 30.4%25 id in 191 aa%2C and N-terminus of Pseudomonas aeruginosa general secretion pathway protein J precursor SW:GSPJ_PSEAE (Q00517) (237 aa) fasta scores: E(): 0.19%2C 39.3%25 id in 61 aa;gbkey=CDS;product=putative prepilin peptidase dependent protein;protein_id=CAL19681.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1148108	1148170	.	+	.	ID=id2315;Note=PS00409 Prokaryotic N-terminal methylation site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00409
AL590842.1	EMBL	gene	1148656	1149126	.	+	.	ID=gene1013;Name=YPO1016;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1016
AL590842.1	EMBL	CDS	1148656	1149126	.	+	0	ID=cds991;Parent=gene1013;Dbxref=InterPro:IPR019652,UniProtKB/TrEMBL:Q7CGZ8,NCBI_GP:CAL19682.1;Name=CAL19682.1;Note=No significant database matches;gbkey=CDS;product=putative membrane protein;protein_id=CAL19682.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1148683	1148742	.	+	.	ID=id2316;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1149114	1149524	.	+	.	ID=gene1014;Name=YPO1017;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1017
AL590842.1	EMBL	CDS	1149114	1149524	.	+	0	ID=cds992;Parent=gene1014;Dbxref=InterPro:IPR012902,InterPro:IPR022204,UniProtKB/TrEMBL:Q7CGZ9,NCBI_GP:CAL19683.1;Name=CAL19683.1;Note=Weakly similar to Escherichia coli prepilin peptidase dependent protein C precursor PpdC SW:PPDC_ECOLI (P08372) (107 aa) fasta scores: E(): 0.42%2C 23.7%25 id in 114 aa%2C and to Pseudomonas aeruginosa PilV TR:Q57003 (EMBL:L36117) (185 aa) fasta scores: E(): 0.91%2C 32.8%25 id in 58 aa;gbkey=CDS;inference=similar to sequence:INSDC:L36117;product=putative prepilin peptidase dependent protein;protein_id=CAL19683.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1149192	1149254	.	+	.	ID=id2317;Note=PS00409 Prokaryotic N-terminal methylation site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00409
AL590842.1	EMBL	sequence_feature	1149198	1149266	.	+	.	ID=id2318;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1149659	1153030	.	+	.	ID=gene1015;Name=recC;gbkey=Gene;gene=recC;gene_biotype=protein_coding;locus_tag=YPO1018
AL590842.1	EMBL	CDS	1149659	1153030	.	+	0	ID=cds993;Parent=gene1015;Dbxref=GOA:Q74RY3,InterPro:IPR006697,InterPro:IPR011335,InterPro:IPR013986,InterPro:IPR027417,UniProtKB/TrEMBL:Q74RY3,NCBI_GP:CAL19684.1;Name=CAL19684.1;Note=Similar to Escherichia coli exodeoxyribonuclease V gamma chain RecC SW:EX5C_ECOLI (P07648) (1122 aa) fasta scores: E(): 0%2C 63.5%25 id in 1123 aa%2C and to Vibrio cholerae exodeoxyribonuclease V%2C 125 kDa subunit VC2322 TR:Q9KPP4 (EMBL:AE004302) (1148 aa) fasta scores: E(): 0%2C 45.8%25 id in 1130 aa;gbkey=CDS;gene=recC;inference=similar to sequence:INSDC:AE004302;product=exodeoxyribonuclease V gamma chain;protein_id=CAL19684.1;transl_table=11
AL590842.1	EMBL	gene	1153112	1156000	.	+	.	ID=gene1016;Name=ptr;gbkey=Gene;gene=ptr;gene_biotype=protein_coding;gene_synonym=ptrA;locus_tag=YPO1019
AL590842.1	EMBL	CDS	1153112	1156000	.	+	0	ID=cds994;Parent=gene1016;Dbxref=GOA:Q7CH00,InterPro:IPR001431,InterPro:IPR007863,InterPro:IPR011237,InterPro:IPR011249,InterPro:IPR011765,UniProtKB/TrEMBL:Q7CH00,NCBI_GP:CAL19685.1;Name=CAL19685.1;Note=Similar to Escherichia coli protease III precursor PtrA SW:PTRA_ECOLI (P05458) (962 aa) fasta scores: E(): 0%2C63.0%25 id in 947 aa%2C and to Vibrio cholerae peptidase%2Cinsulinase family VC2072 TR:Q9KQC8 (EMBL:AE004281) (939 aa) fasta scores: E(): 0%2C 28.0%25 id in 919 aa;gbkey=CDS;gene=ptr;inference=similar to sequence:INSDC:AE004281;product=protease III precursor;protein_id=CAL19685.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1153274	1153693	.	+	.	ID=id2319;Note=Pfam match to entry PF00675 Peptidase_M16%2CInsulinase (Peptidase family M16)%2C score 166.30%2C E-value 5e-46;gbkey=misc_feature;gene=ptr;inference=protein motif:PF00675
AL590842.1	EMBL	sequence_feature	1153340	1153411	.	+	.	ID=id2320;Note=PS00143 Insulinase family%2C zinc-binding region signature.;gbkey=misc_feature;gene=ptr;inference=protein motif:ProSite:PS00143
AL590842.1	EMBL	gene	1155997	1159659	.	+	.	ID=gene1017;Name=recB;gbkey=Gene;gene=recB;gene_biotype=protein_coding;gene_synonym=rorA;locus_tag=YPO1020
AL590842.1	EMBL	CDS	1155997	1159659	.	+	0	ID=cds995;Parent=gene1017;Dbxref=GOA:Q0WI24,InterPro:IPR000212,InterPro:IPR004586,InterPro:IPR011335,InterPro:IPR011604,InterPro:IPR014016,InterPro:IPR014017,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WI24,NCBI_GP:CAL19686.1;Name=CAL19686.1;Note=Similar to Escherichia coli exodeoxyribonuclease V beta chain RecB SW:EX5B_ECOLI (P08394) (1180 aa) fasta scores: E(): 0%2C 62.0%25 id in 1190 aa%2C and to Vibrio cholerae exodeoxyribonuclease V%2C 135 kDa subunit VC2320 TR:Q9KPP6 (EMBL:AE004302) (1208 aa) fasta scores: E(): 0%2C 48.0%25 id in 1203 aa;gbkey=CDS;gene=recB;inference=similar to sequence:INSDC:AE004302;product=exodeoxyribonuclease V beta chain;protein_id=CAL19686.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1156006	1158120	.	+	.	ID=id2321;Note=Pfam match to entry PF00580 UvrD-helicase%2C UvrD/REP helicase%2C score 367.30%2C E-value 1.6e-106;gbkey=misc_feature;gene=recB;inference=protein motif:PF00580
AL590842.1	EMBL	sequence_feature	1156066	1156089	.	+	.	ID=id2322;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=recB;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1159656	1161614	.	+	.	ID=gene1018;Name=recD;gbkey=Gene;gene=recD;gene_biotype=protein_coding;locus_tag=YPO1021
AL590842.1	EMBL	CDS	1159656	1161614	.	+	0	ID=cds996;Parent=gene1018;Dbxref=GOA:Q7CH01,InterPro:IPR003593,InterPro:IPR006344,InterPro:IPR027417,InterPro:IPR027785,UniProtKB/TrEMBL:Q7CH01,NCBI_GP:CAL19687.1;Name=CAL19687.1;Note=Similar to Escherichia coli exodeoxyribonuclease V alpha chain RecD SW:EX5A_ECOLI (P04993) (608 aa) fasta scores: E(): 0%2C 56.7%25 id in 638 aa%2C and to Vibrio cholerae exodeoxyribonuclease V%2C 67 kDa subunit VC2319 TR:Q9KPP7 (EMBL:AE004302) (706 aa) fasta scores: E(): 0%2C 45.3%25 id in 727 aa;gbkey=CDS;gene=recD;inference=similar to sequence:INSDC:AE004302;product=exodeoxyribonuclease V alpha chain;protein_id=CAL19687.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1160223	1160246	.	+	.	ID=id2323;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=recD;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1161384	1161524	.	+	.	ID=id2324;Note=Pfam match to entry PF01443 Viral_helicase1%2C Viral (Superfamily 1) RNA helicase%2C score 29.70%2C E-value 6.5e-08;gbkey=misc_feature;gene=recD;inference=protein motif:PF01443
AL590842.1	EMBL	gene	1161769	1163094	.	-	.	ID=gene1019;Name=argA;gbkey=Gene;gene=argA;gene_biotype=protein_coding;locus_tag=YPO1022
AL590842.1	EMBL	CDS	1161769	1163094	.	-	0	ID=cds997;Parent=gene1019;Dbxref=GOA:Q8ZH86,InterPro:IPR000182,InterPro:IPR001048,InterPro:IPR010167,InterPro:IPR016181,NCBI_GP:CAL19688.1;Name=CAL19688.1;Note=Similar to Escherichia coli amino-acid acetyltransferase ArgA SW:ARGA_ECOLI (P08205) (443 aa) fasta scores: E(): 0%2C 87.3%25 id in 441 aa%2C and to Vibrio cholerae N-acetylglutamate synthase VC2316 TR:Q9KPQ0 (EMBL:AE004301) (456 aa) fasta scores: E(): 0%2C 65.8%25 id in 445 aa;gbkey=CDS;gene=argA;inference=similar to sequence:INSDC:AE004301;product=amino-acid acetyltransferase;protein_id=CAL19688.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1161856	1162074	.	-	.	ID=id2325;Note=Pfam match to entry PF00583 Acetyltransf%2CAcetyltransferase (GNAT) family%2C score 42.00%2C E-value 1.3e-08;gbkey=misc_feature;gene=argA;inference=protein motif:PF00583
AL590842.1	EMBL	sequence_feature	1162387	1163022	.	-	.	ID=id2326;Note=Pfam match to entry PF00696 aakinase%2C Amino acid kinase family%2C score 65.00%2C E-value 1.6e-15;gbkey=misc_feature;gene=argA;inference=protein motif:PF00696
AL590842.1	EMBL	gene	1163330	1164580	.	+	.	ID=gene1020;Name=YPO1023;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1023
AL590842.1	EMBL	CDS	1163330	1164580	.	+	0	ID=cds998;Parent=gene1020;Dbxref=GOA:Q0WI21,InterPro:IPR002508,InterPro:IPR021731,UniProtKB/TrEMBL:Q0WI21,NCBI_GP:CAL19689.1;Name=CAL19689.1;Note=Similar to Escherichia coli N-acetylmuramoyl-L-alanine amidase AmiC precursor SW:AMIC_ECOLI (Q46929) (417 aa) fasta scores: E(): 0%2C 70.4%25 id in 419 aa%2C and to Neisseria meningitidis N-acetylmuramoyl-L-alanine amidase AmiC or NMA2028 TR:Q9JT18 (EMBL:AL162757) (416 aa) fasta scores: E(): 0%2C49.9%25 id in 421 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL162757;product=N-acetylmuramoyl-L-alanine amidase AmiC precursor;protein_id=CAL19689.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1164077	1164553	.	+	.	ID=id2327;Note=Pfam match to entry PF01520 Amidase_3%2CN-acetylmuramoyl-L-alanine amidase%2C score 238.00%2C E-value 1.4e-67;gbkey=misc_feature;inference=protein motif:PF01520
AL590842.1	EMBL	tRNA	1164810	1164886	.	-	.	ID=rna17;Note=tRNA Met anticodon CAT%2C Cove score 86.07;gbkey=tRNA;product=tRNA-Met
AL590842.1	EMBL	exon	1164810	1164886	.	-	.	ID=id2328;Parent=rna17;Note=tRNA Met anticodon CAT%2C Cove score 86.07;gbkey=tRNA;product=tRNA-Met
AL590842.1	EMBL	tRNA	1165010	1165086	.	-	.	ID=rna18;Note=tRNA Met anticodon CAT%2C Cove score 86.07;gbkey=tRNA;product=tRNA-Met
AL590842.1	EMBL	exon	1165010	1165086	.	-	.	ID=id2329;Parent=rna18;Note=tRNA Met anticodon CAT%2C Cove score 86.07;gbkey=tRNA;product=tRNA-Met
AL590842.1	EMBL	gene	1165302	1166474	.	+	.	ID=gene1021;Name=YPO1025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1025
AL590842.1	EMBL	CDS	1165302	1166474	.	+	0	ID=cds999;Parent=gene1021;Dbxref=GOA:Q7CH02,InterPro:IPR005300,InterPro:IPR009009,InterPro:IPR010611,InterPro:IPR014733,InterPro:IPR026044,UniProtKB/TrEMBL:Q7CH02,NCBI_GP:CAL19690.1;Name=CAL19690.1;Note=Similar to Escherichia coli membrane-bound lytic murein transglycosylase A precursor SW:MLTA_ECOLI (P46885) (365 aa) fasta scores: E(): 0%2C 69.9%25 id in 366 aa%2C and to Vibrio cholerae membrane-bound lytic murein transglycosylase A precursor TR:Q9KPQ4 (EMBL:AE004301) (368 aa) fasta scores: E(): 0%2C 46.0%25 id in 359 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004301;product=membrane-bound lytic murein transglycosylase A precursor;protein_id=CAL19690.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1165332	1165364	.	+	.	ID=id2330;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	1166617	1167444	.	+	.	ID=gene1022;Name=YPO1026;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1026
AL590842.1	EMBL	CDS	1166617	1167444	.	+	0	ID=cds1000;Parent=gene1022;Dbxref=GOA:Q7CH03,InterPro:IPR000594,InterPro:IPR009036,InterPro:IPR016040,UniProtKB/TrEMBL:Q7CH03,NCBI_GP:CAL19691.1;Name=CAL19691.1;Note=Similar to Escherichia coli hypothetical protein YgdL SW:YGDL_ECOLI (Q46927) (268 aa) fasta scores: E(): 0%2C80.5%25 id in 267 aa%2C and to Vibrio cholerae HesA/MoeB/ThiF family protein VC2311 TR:Q9KPQ5 (EMBL:AE004301) (273 aa) fasta scores: E(): 0%2C 65.8%25 id in 263 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004301;product=conserved hypothetical protein;protein_id=CAL19691.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1166701	1167114	.	+	.	ID=id2331;Note=Pfam match to entry PF00899 ThiF_family%2C ThiF family%2C score 183.20%2C E-value 4.2e-51;gbkey=misc_feature;inference=protein motif:PF00899
AL590842.1	EMBL	sequence_feature	1167319	1167387	.	+	.	ID=id2332;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1167480	1167923	.	-	.	ID=gene1023;Name=YPO1027;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1027
AL590842.1	EMBL	CDS	1167480	1167923	.	-	0	ID=cds1001;Parent=gene1023;Dbxref=InterPro:IPR003808,InterPro:IPR017763,UniProtKB/TrEMBL:Q7CH04,NCBI_GP:CAL19692.1;Name=CAL19692.1;Note=Similar to Escherichia coli hypothetical protein YgdK SW:YGDK_ECOLI (Q46926) (147 aa) fasta scores: E(): 5.7e-30%2C 59.0%25 id in 139 aa%2C and to Vibrio cholerae hypothetical protein VC2310 TR:Q9KPQ6 (EMBL:AE004301) (144 aa) fasta scores: E(): 3.5e-19%2C 43.1%25 id in 144 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004301;product=conserved hypothetical protein;protein_id=CAL19692.1;transl_table=11
AL590842.1	EMBL	gene	1168058	1169377	.	-	.	ID=gene1024;Name=YPO1028;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1028
AL590842.1	EMBL	CDS	1168058	1169377	.	-	0	ID=cds1002;Parent=gene1024;Dbxref=GOA:Q0WI17,InterPro:IPR000192,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR020578,InterPro:IPR022471,UniProtKB/TrEMBL:Q0WI17,NCBI_GP:CAL19693.1;Name=CAL19693.1;Note=Similar to Escherichia coli ORF_O401 TR:Q46925 (EMBL:U29581) (401 aa) fasta scores: E(): 0%2C 67.1%25 id in 401 aa%2C and to Vibrio cholerae aminotransferase%2C class V VC2309 TR:Q9KPQ7 (EMBL:AE004301) (404 aa) fasta scores: E(): 0%2C 51.5%25 id in 396 aa;gbkey=CDS;inference=similar to sequence:INSDC:U29581;product=putative aminotransferase class V;protein_id=CAL19693.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1168100	1169176	.	-	.	ID=id2333;Note=Pfam match to entry PF00266 aminotran_5%2CAminotransferases class-V%2C score 5.20%2C E-value 1.6e-07;gbkey=misc_feature;inference=protein motif:PF00266
AL590842.1	EMBL	sequence_feature	1168568	1168627	.	-	.	ID=id2334;Note=PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00595
AL590842.1	EMBL	gene	1169923	1170840	.	+	.	ID=gene1025;Name=gcvA;gbkey=Gene;gene=gcvA;gene_biotype=protein_coding;locus_tag=YPO1029
AL590842.1	EMBL	CDS	1169923	1170840	.	+	0	ID=cds1003;Parent=gene1025;Dbxref=GOA:Q7CH05,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CH05,NCBI_GP:CAL19694.1;Name=CAL19694.1;Note=Similar to Escherichia coli glycine cleavage system transcriptional activator GcvA SW:GCVA_ECOLI (P32064) (305 aa) fasta scores: E(): 0%2C 88.2%25 id in 304 aa%2C and to Vibrio cholerae transcriptional regulator%2C LysR family VC0896 TR:Q9KTK6 (EMBL:AE004173) (306 aa) fasta scores: E(): 0%2C69.3%25 id in 296 aa;gbkey=CDS;gene=gcvA;inference=similar to sequence:INSDC:AE004173;product=glycine cleavage system transcriptional activator;protein_id=CAL19694.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1169944	1170357	.	+	.	ID=id2335;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 185.90%2C E-value 6.3e-52;gbkey=misc_feature;gene=gcvA;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	1169983	1170048	.	+	.	ID=id2336;Note=Predicted helix-turn-helix motif with score 1894 (+5.64 SD) at aa 21-42%2C sequence LSFTKAAEELFVTQAAVSHQIK;gbkey=misc_feature;gene=gcvA
AL590842.1	EMBL	sequence_feature	1169986	1170078	.	+	.	ID=id2337;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature.;gbkey=misc_feature;gene=gcvA;inference=protein motif:ProSite:PS00044
AL590842.1	EMBL	gene	1171006	1171401	.	+	.	ID=gene1026;Name=YPO1030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1030
AL590842.1	EMBL	CDS	1171006	1171401	.	+	0	ID=cds1004;Parent=gene1026;Dbxref=InterPro:IPR006696,UniProtKB/TrEMBL:Q0WI15,NCBI_GP:CAL19695.1;Name=CAL19695.1;Note=Similar to Escherichia coli hypothetical protein YgdD SW:YGDD_ECOLI (P32065) (131 aa) fasta scores: E(): 0%2C71.8%25 id in 131 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=conserved hypothetical protein;protein_id=CAL19695.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1171018	1171086	.	+	.	ID=id2338;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1171114	1171182	.	+	.	ID=id2339;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1171201	1171269	.	+	.	ID=id2340;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1171297	1171365	.	+	.	ID=id2341;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1171394	1172500	.	+	.	ID=gene1027;Name=YPO1031;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1031
AL590842.1	EMBL	CDS	1171394	1172500	.	+	0	ID=cds1005;Parent=gene1027;Dbxref=GOA:Q8ZH78,InterPro:IPR002877,InterPro:IPR011224,InterPro:IPR029063,NCBI_GP:CAL19696.1;Name=CAL19696.1;Note=Similar to Escherichia coli hypothetical protein YgdE SW:YGDE_ECOLI (P32066) (366 aa) fasta scores: E(): 0%2C78.1%25 id in 365 aa%2C and to Haemophilus influenzae hypothetical protein HI1195 SW:YGDE_HAEIN (P45100) (363 aa) fasta scores: E(): 0%2C 60.9%25 id in 358 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19696.1;transl_table=11
AL590842.1	EMBL	gene	1172751	1173506	.	-	.	ID=gene1028;Name=exo;gbkey=Gene;gene=exo;gene_biotype=protein_coding;gene_synonym=xni;locus_tag=YPO1032
AL590842.1	EMBL	CDS	1172751	1173506	.	-	0	ID=cds1006;Parent=gene1028;Dbxref=GOA:Q7CH07,InterPro:IPR002421,InterPro:IPR008918,InterPro:IPR020045,InterPro:IPR020046,InterPro:IPR022895,InterPro:IPR029060,NCBI_GP:CAL19697.1;Name=CAL19697.1;Note=Similar to Escherichia coli exodeoxyribonuclease IX Xni or Exo SW:EX9_ECOLI (P38506) (281 aa) fasta scores: E(): 0%2C 71.7%25 id in 247 aa%2C and to Vibrio cholerae exodeoxyribonuclease IX VC0898 TR:Q9KTK4 (EMBL:AE004173) (283 aa) fasta scores: E(): 0%2C 53.9%25 id in 254 aa;gbkey=CDS;gene=exo;inference=similar to sequence:INSDC:AE004173;product=exodeoxyribonuclease IX;protein_id=CAL19697.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1172754	1173500	.	-	.	ID=id2342;Note=Pfam match to entry PF01367 5_3_exonuclease%2C 5'-3' exonuclease%2C score 123.20%2C E-value 4.9e-33;gbkey=misc_feature;gene=exo;inference=protein motif:PF01367
AL590842.1	EMBL	gene	1173766	1175130	.	-	.	ID=gene1029;Name=YPO1033;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1033
AL590842.1	EMBL	CDS	1173766	1175130	.	-	0	ID=cds1007;Parent=gene1029;Dbxref=InterPro:IPR005269,InterPro:IPR021826,InterPro:IPR027820,UniProtKB/TrEMBL:Q7CH10,NCBI_GP:CAL19698.1;Name=CAL19698.1;Note=Similar to Escherichia coli hypothetical protein YgdH SW:YGDH_ECOLI (P37350) (454 aa) fasta scores: E(): 0%2C82.6%25 id in 454 aa%2C and to Vibrio cholerae hypothetical protein VC0899 TR:Q9KTK3 (EMBL:AE004173) (457 aa) fasta scores: E(): 0%2C 69.9%25 id in 455 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004173;product=conserved hypothetical protein;protein_id=CAL19698.1;transl_table=11
AL590842.1	EMBL	gene	1175283	1176128	.	-	.	ID=gene1030;Name=YPO1034;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1034
AL590842.1	EMBL	CDS	1175283	1176128	.	-	0	ID=cds1008;Parent=gene1030;Dbxref=GOA:Q8ZH75,InterPro:IPR016428,InterPro:IPR029139,InterPro:IPR029500,NCBI_GP:CAL19699.1;Name=CAL19699.1;Note=Similar to Escherichia coli hypothetical protein YqcD SW:YQCD_ECOLI (Q46920) (282 aa) fasta scores: E(): 0%2C75.9%25 id in 282 aa%2C and to Vibrio cholerae hypothetical protein VC0902 TR:Q9KTK0 (EMBL:AE004174) (287 aa) fasta scores: E(): 0%2C 64.2%25 id in 282 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004174;product=conserved hypothetical protein;protein_id=CAL19699.1;transl_table=11
AL590842.1	EMBL	gene	1176266	1176811	.	+	.	ID=gene1031;Name=syd;gbkey=Gene;gene=syd;gene_biotype=protein_coding;gene_synonym=ydr;locus_tag=YPO1035
AL590842.1	EMBL	CDS	1176266	1176811	.	+	0	ID=cds1009;Parent=gene1031;Dbxref=GOA:Q8CZY7,InterPro:IPR009948,NCBI_GP:CAL19700.1;Name=CAL19700.1;Note=Similar to Escherichia coli Syd protein SW:SYDP_ECOLI (P43526) (181 aa) fasta scores: E(): 0%2C 58.0%25 id in 174 aa%2C and to Vibrio cholerae Syd protein VC0903 TR:Q9KTJ9 (EMBL:AE004174) (198 aa) fasta scores: E(): 0%2C50.0%25 id in 176 aa;gbkey=CDS;gene=syd;inference=similar to sequence:INSDC:AE004174;product=Syd protein;protein_id=CAL19700.1;transl_table=11
AL590842.1	EMBL	gene	1177074	1177355	.	+	.	ID=gene1032;Name=csrB;gbkey=Gene;gene=csrB;gene_biotype=misc_RNA
AL590842.1	EMBL	transcript	1177074	1177355	.	+	.	ID=rna19;Parent=gene1032;Note=Similar to Escherichia coli regulatory RNA csrB%2C 62%25 identity in 283 nt overlap;gbkey=misc_RNA;gene=csrB
AL590842.1	EMBL	exon	1177074	1177355	.	+	.	ID=id2343;Parent=rna19;Note=Similar to Escherichia coli regulatory RNA csrB%2C 62%25 identity in 283 nt overlap;gbkey=misc_RNA;gene=csrB
AL590842.1	EMBL	repeat_region	1177356	1178067	.	+	.	ID=id2344;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	1177501	1177959	.	+	.	ID=gene1033;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO1036
AL590842.1	EMBL	CDS	1177501	1177959	.	+	0	ID=cds1010;Parent=gene1033;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL19701.1;Name=CAL19701.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL19701.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1177555	1177866	.	+	.	ID=id2345;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	1178213	1178545	.	+	.	ID=gene1034;Name=YPO1037;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1037
AL590842.1	EMBL	CDS	1178213	1178545	.	+	0	ID=cds1011;Parent=gene1034;Dbxref=InterPro:IPR007384,InterPro:IPR023376,UniProtKB/TrEMBL:Q0WI08,NCBI_GP:CAL19702.1;Name=CAL19702.1;Note=Similar to Escherichia coli hypothetical protein YqcC SW:YQCC_ECOLI (Q46919) (109 aa) fasta scores: E(): 1.3e-15%2C 41.3%25 id in 109 aa%2C and to the N-terminal region of Erwinia carotovora exoenzyme regulation regulon ORF1 SW:YQCB_ERWCA (Q47417) (376 aa) fasta scores: E(): 1.8e-16%2C67.1%25 id in 70 aa. Note that the Erwinia carotovora paralogue is fused to the downstream gene;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19702.1;transl_table=11
AL590842.1	EMBL	gene	1178545	1179318	.	+	.	ID=gene1035;Name=YPO1038;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1038
AL590842.1	EMBL	CDS	1178545	1179318	.	+	0	ID=cds1012;Parent=gene1035;Dbxref=GOA:Q8ZH72,InterPro:IPR006145,InterPro:IPR006224,InterPro:IPR020103,NCBI_GP:CAL19703.1;Name=CAL19703.1;Note=Similar to Escherichia coli hypothetical protein YqcB SW:YQCB_ECOLI (Q46918) (260 aa) fasta scores: E(): 0%2C69.3%25 id in 257 aa%2C and to the C-terminal region of Erwinia carotovora exoenzyme regulation regulon ORF1 SW:YQCB_ERWCA (Q47417) (376 aa) fasta scores: E(): 0%2C 76.3%25 id in 257 aa. Note that the Erwinia carotovora paralogue is fused to the upstream gene;gbkey=CDS;product=Conserved hypothetical protein;protein_id=CAL19703.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1178572	1179054	.	+	.	ID=id2346;Note=Pfam match to entry PF00849 PseudoU_synth_2%2C RNA pseudouridylate synthase%2C score 176.90%2C E-value 3.4e-49;gbkey=misc_feature;inference=protein motif:PF00849
AL590842.1	EMBL	sequence_feature	1178692	1178736	.	+	.	ID=id2347;Note=PS01129 Rlu family of pseudouridine synthase signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01129
AL590842.1	EMBL	gene	1179346	1179795	.	+	.	ID=gene1036;Name=YPO1039;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1039
AL590842.1	EMBL	CDS	1179346	1179795	.	+	0	ID=cds1013;Parent=gene1036;Dbxref=GOA:Q7CH13,InterPro:IPR001094,InterPro:IPR008254,InterPro:IPR029039,UniProtKB/TrEMBL:Q7CH13,NCBI_GP:CAL19704.1;Name=CAL19704.1;Note=Similar to Escherichia coli hypothetical protein TR:Q46917 (EMBL:U29581) (149 aa) fasta scores: E(): 0%2C66.2%25 id in 148 aa%2C and to Erwinia carotovora SCRI193 TR:Q47418 (EMBL:X79474) (151 aa) fasta scores: E(): 0%2C68.9%25 id in 148 aa;gbkey=CDS;inference=similar to sequence:INSDC:X79474;product=conserved hypothetical protein;protein_id=CAL19704.1;transl_table=11
AL590842.1	EMBL	gene	1179885	1180274	.	-	.	ID=gene1037;Name=YPO1040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1040
AL590842.1	EMBL	CDS	1179885	1180274	.	-	0	ID=cds1014;Parent=gene1037;Dbxref=InterPro:IPR020911,NCBI_GP:CAL19705.1;Name=CAL19705.1;Note=Similar to Escherichia coli hypothetical protein YaeH SW:YAEH_ECOLI (P37048) (128 aa) fasta scores: E(): 0%2C85.7%25 id in 126 aa%2C and to Vibrio cholerae hypothetical protein VC2264 TR:Q9KPU8 (EMBL:AE004298) (137 aa) fasta scores: E(): 1.9e-27%2C 64.3%25 id in 126 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004298;product=conserved hypothetical protein;protein_id=CAL19705.1;transl_table=11
AL590842.1	EMBL	gene	1180398	1181222	.	-	.	ID=gene1038;Name=dapD;gbkey=Gene;gene=dapD;gene_biotype=protein_coding;locus_tag=YPO1041
AL590842.1	EMBL	CDS	1180398	1181222	.	-	0	ID=cds1015;Parent=gene1038;Dbxref=GOA:Q8ZH69,InterPro:IPR001451,InterPro:IPR005664,InterPro:IPR011004,InterPro:IPR018357,InterPro:IPR023180,PDB:3GOS,NCBI_GP:CAL19706.1;Name=CAL19706.1;Note=Similar to Escherichia coli 2%2C3%2C4%2C5-tetrahydropyridine-2-carboxylate N-succinyltransferase dapD SW:DAPD_ECOLI (P03948) (274 aa) fasta scores: E(): 0%2C 92.3%25 id in 274 aa%2C and to Mycobacterium bovis 2%2C3%2C4%2C5-tetrahydropyridine-2-carboxylate N-succinyltransferase dapD SW:DAPD_MYCBO (P56220) (274 aa) fasta scores: E(): 0%2C 93.8%25 id in 274 aa;gbkey=CDS;gene=dapD;product=2%2C3%2C4%2C5-tetrahydropyridine-2-carboxylate N-succinyltransferase;protein_id=CAL19706.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1180575	1180628	.	-	.	ID=id2348;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 11.30%2CE-value 23;gbkey=misc_feature;gene=dapD;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	1180629	1180682	.	-	.	ID=id2349;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 10.60%2CE-value 28;gbkey=misc_feature;gene=dapD;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	1180725	1180778	.	-	.	ID=id2350;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 13.30%2CE-value 6;gbkey=misc_feature;gene=dapD;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	1180737	1180823	.	-	.	ID=id2351;Note=PS00101 Hexapeptide-repeat containing-transferases signature.;gbkey=misc_feature;gene=dapD;inference=protein motif:ProSite:PS00101
AL590842.1	EMBL	sequence_feature	1180779	1180832	.	-	.	ID=id2352;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 5.50%2C E-value 1.4e+02;gbkey=misc_feature;gene=dapD;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	1180848	1180901	.	-	.	ID=id2353;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 3.20%2C E-value 2.8e+02;gbkey=misc_feature;gene=dapD;inference=protein motif:PF00132
AL590842.1	EMBL	gene	1181397	1184135	.	-	.	ID=gene1039;Name=glnD;gbkey=Gene;gene=glnD;gene_biotype=protein_coding;locus_tag=YPO1042
AL590842.1	EMBL	CDS	1181397	1184135	.	-	0	ID=cds1016;Parent=gene1039;Dbxref=GOA:Q8ZH68,InterPro:IPR002912,InterPro:IPR002934,InterPro:IPR003607,InterPro:IPR006674,InterPro:IPR010043,InterPro:IPR013546,NCBI_GP:CAL19707.1;Name=CAL19707.1;Note=Similar to Escherichia coli [protein-PII] uridylyltransferase GlnD SW:GLND_ECOLI (P27249) (890 aa) fasta scores: E(): 0%2C 76.5%25 id in 880 aa;gbkey=CDS;gene=glnD;product=[protein-PII] uridylyltransferase;protein_id=CAL19707.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1181403	1181627	.	-	.	ID=id2354;Note=Pfam match to entry PF01842 ACT%2C ACT domain%2C score 43.20%2C E-value 6e-09;gbkey=misc_feature;gene=glnD;inference=protein motif:PF01842
AL590842.1	EMBL	sequence_feature	1182267	1182671	.	-	.	ID=id2355;Note=Pfam match to entry PF01966 HD%2C HD domain%2C score 75.50%2C E-value 1.1e-18;gbkey=misc_feature;gene=glnD;inference=protein motif:PF01966
AL590842.1	EMBL	sequence_feature	1183566	1183883	.	-	.	ID=id2356;Note=Pfam match to entry PF01909 NTP_transf_2%2CNucleotidyltransferase domain%2C score 39.90%2C E-value 5.8e-08;gbkey=misc_feature;gene=glnD;inference=protein motif:PF01909
AL590842.1	EMBL	gene	1184138	1184929	.	-	.	ID=gene1040;Name=ampM;gbkey=Gene;gene=ampM;gene_biotype=protein_coding;gene_synonym=b0168,map;locus_tag=YPO1043
AL590842.1	EMBL	CDS	1184138	1184929	.	-	0	ID=cds1017;Parent=gene1040;Dbxref=GOA:Q7CH15,InterPro:IPR000994,InterPro:IPR001714,InterPro:IPR002467,UniProtKB/TrEMBL:Q7CH15,NCBI_GP:CAL19708.1;Name=CAL19708.1;Note=Similar to Escherichia coli methionine aminopeptidase SW:AMPM_ECOLI (P07906) (264 aa) fasta scores: E(): 0%2C 84.0%25 id in 263 aa;gbkey=CDS;gene=ampM;product=methionine aminopeptidase;protein_id=CAL19708.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1184192	1184920	.	-	.	ID=id2357;Note=Pfam match to entry PF00557 Peptidase_M24%2Cmetallopeptidase family M24%2C score 336.80%2C E-value 2.4e-97;gbkey=misc_feature;gene=ampM;inference=protein motif:PF00557
AL590842.1	EMBL	sequence_feature	1184372	1184428	.	-	.	ID=id2358;Note=PS00680 Methionine aminopeptidase subfamily 1 signature.;gbkey=misc_feature;gene=ampM;inference=protein motif:ProSite:PS00680
AL590842.1	EMBL	gene	1185364	1186089	.	+	.	ID=gene1041;Name=rpsB;gbkey=Gene;gene=rpsB;gene_biotype=protein_coding;locus_tag=YPO1044
AL590842.1	EMBL	CDS	1185364	1186089	.	+	0	ID=cds1018;Parent=gene1041;Dbxref=GOA:Q8ZH66,InterPro:IPR001865,InterPro:IPR005706,InterPro:IPR018130,InterPro:IPR023591,NCBI_GP:CAL19709.1;Name=CAL19709.1;Note=Similar to Escherichia coli 30S ribosomal protein S2 RpsB SW:RS2_ECOLI (P02351) (240 aa) fasta scores: E(): 0%2C93.8%25 id in 240 aa;gbkey=CDS;gene=rpsB;product=30S ribosomal protein S2;protein_id=CAL19709.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1185379	1185414	.	+	.	ID=id2359;Note=PS00962 Ribosomal protein S2 signature 1.;gbkey=misc_feature;gene=rpsB;inference=protein motif:ProSite:PS00962
AL590842.1	EMBL	sequence_feature	1185388	1186038	.	+	.	ID=id2360;Note=Pfam match to entry PF00318 Ribosomal_S2%2C Ribosomal protein S2%2C score 435.90%2C E-value 3.5e-127;gbkey=misc_feature;gene=rpsB;inference=protein motif:PF00318
AL590842.1	EMBL	sequence_feature	1185835	1185909	.	+	.	ID=id2361;Note=PS00963 Ribosomal protein S2 signature 2.;gbkey=misc_feature;gene=rpsB;inference=protein motif:ProSite:PS00963
AL590842.1	EMBL	gene	1186217	1187074	.	+	.	ID=gene1042;Name=tsf;gbkey=Gene;gene=tsf;gene_biotype=protein_coding;locus_tag=YPO1045
AL590842.1	EMBL	CDS	1186217	1187074	.	+	0	ID=cds1019;Parent=gene1042;Dbxref=GOA:Q8ZH65,InterPro:IPR000449,InterPro:IPR001816,InterPro:IPR009060,InterPro:IPR014039,InterPro:IPR018101,NCBI_GP:CAL19710.1;Name=CAL19710.1;Note=Similar to Escherichia coli elongation factor Ts Tsf SW:EFTS_ECOLI (P02997) (282 aa) fasta scores: E(): 0%2C 78.4%25 id in 282 aa;gbkey=CDS;gene=tsf;product=elongation factor Ts;protein_id=CAL19710.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1186223	1186342	.	+	.	ID=id2362;Note=Pfam match to entry PF02094 TS-N%2C TS-N domain%2C score 71.00%2C E-value 2.6e-17;gbkey=misc_feature;gene=tsf;inference=protein motif:PF02094
AL590842.1	EMBL	sequence_feature	1186385	1187011	.	+	.	ID=id2363;Note=Pfam match to entry PF00889 EF_TS%2C Elongation factor TS%2C score 356.30%2C E-value 3.2e-103;gbkey=misc_feature;gene=tsf;inference=protein motif:PF00889
AL590842.1	EMBL	sequence_feature	1186445	1186477	.	+	.	ID=id2364;Note=PS01127 Elongation factor Ts signature 2.;gbkey=misc_feature;gene=tsf;inference=protein motif:ProSite:PS01127
AL590842.1	EMBL	gene	1187283	1188008	.	+	.	ID=gene1043;Name=pyrH;gbkey=Gene;gene=pyrH;gene_biotype=protein_coding;gene_synonym=smbA;locus_tag=YPO1046
AL590842.1	EMBL	CDS	1187283	1188008	.	+	0	ID=cds1020;Parent=gene1043;Dbxref=GOA:Q8ZH64,InterPro:IPR001048,InterPro:IPR011817,InterPro:IPR015963,NCBI_GP:CAL19711.1;Name=CAL19711.1;Note=Similar to Escherichia coli uridylate kinase PyrH SW:PYRH_ECOLI (P29464) (240 aa) fasta scores: E(): 0%2C 90.8%25 id in 240 aa;gbkey=CDS;gene=pyrH;product=uridylate kinase;protein_id=CAL19711.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1187310	1187861	.	+	.	ID=id2365;Note=Pfam match to entry PF00696 aakinase%2C Amino acid kinase family%2C score 148.00%2C E-value 1.7e-40;gbkey=misc_feature;gene=pyrH;inference=protein motif:PF00696
AL590842.1	EMBL	gene	1188144	1188701	.	+	.	ID=gene1044;Name=b0172;gbkey=Gene;gene=b0172;gene_biotype=protein_coding;gene_synonym=frr,rrf;locus_tag=YPO1047
AL590842.1	EMBL	CDS	1188144	1188701	.	+	0	ID=cds1021;Parent=gene1044;Dbxref=GOA:Q8ZH63,InterPro:IPR002661,InterPro:IPR023584,NCBI_GP:CAL19712.1;Name=CAL19712.1;Note=Similar to Escherichia coli ribosome recycling factor SW:RRF_ECOLI (P16174) (185 aa) fasta scores: E(): 0%2C80.5%25 id in 185 aa;gbkey=CDS;gene=b0172;product=ribosome recycling factor;protein_id=CAL19712.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1188198	1188692	.	+	.	ID=id2366;Note=Pfam match to entry PF01765 RRF%2C Ribosome recycling factor%2C score 336.80%2C E-value 2.4e-97;gbkey=misc_feature;gene=b0172;inference=protein motif:PF01765
AL590842.1	EMBL	gene	1188915	1190111	.	+	.	ID=gene1045;Name=b0173;gbkey=Gene;gene=b0173;gene_biotype=protein_coding;gene_synonym=dxr;locus_tag=YPO1048
AL590842.1	EMBL	CDS	1188915	1190111	.	+	0	ID=cds1022;Parent=gene1045;Dbxref=GOA:Q8ZH62,InterPro:IPR003821,InterPro:IPR013512,InterPro:IPR013644,InterPro:IPR016040,InterPro:IPR026877,NCBI_GP:CAL19713.1;Name=CAL19713.1;Note=Similar to Escherichia coli 1-deoxy-D-xylulose 5-phosphate reductoisomerase SW:DXR_ECOLI (P45568) (398 aa) fasta scores: E(): 0%2C 72.2%25 id in 396 aa;gbkey=CDS;gene=b0173;product=1-deoxy-D-xylulose 5-phosphate reductoisomerase;protein_id=CAL19713.1;transl_table=11
AL590842.1	EMBL	gene	1190335	1191093	.	+	.	ID=gene1046;Name=rth;gbkey=Gene;gene=rth;gene_biotype=protein_coding;gene_synonym=uppS;locus_tag=YPO1049
AL590842.1	EMBL	CDS	1190335	1191093	.	+	0	ID=cds1023;Parent=gene1046;Dbxref=GOA:Q8ZH61,InterPro:IPR001441,InterPro:IPR018520,NCBI_GP:CAL19714.1;Name=CAL19714.1;Note=Similar to Escherichia coli undecaprenyl pyrophosphate synthetase SW:UPPS_ECOLI (Q47675) (253 aa) fasta scores: E(): 0%2C 78.8%25 id in 245 aa;gbkey=CDS;gene=rth;product=undecaprenyl pyrophosphate synthetase;protein_id=CAL19714.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1190398	1191063	.	+	.	ID=id2367;Note=Pfam match to entry PF01255 UPP_synthetase%2C Putative undecaprenyl diphosphate synthase%2C score 454.70%2C E-value 8e-133;gbkey=misc_feature;gene=rth;inference=protein motif:PF01255
AL590842.1	EMBL	sequence_feature	1190896	1190949	.	+	.	ID=id2368;Note=PS01066 Undecaprenyl pyrophosphate synthetase family signature.;gbkey=misc_feature;gene=rth;inference=protein motif:ProSite:PS01066
AL590842.1	EMBL	gene	1191103	1191951	.	+	.	ID=gene1047;Name=cds;gbkey=Gene;gene=cds;gene_biotype=protein_coding;gene_synonym=cdsA;locus_tag=YPO1050
AL590842.1	EMBL	CDS	1191103	1191951	.	+	0	ID=cds1024;Parent=gene1047;Dbxref=GOA:Q7CH16,InterPro:IPR000374,UniProtKB/TrEMBL:Q7CH16,NCBI_GP:CAL19715.1;Name=CAL19715.1;Note=Similar to Escherichia coli phosphatidate cytidylyltransferase cdsA or cds SW:CDSA_ECOLI (P06466) (249 aa) fasta scores: E(): 0%2C 75.2%25 id in 246 aa;gbkey=CDS;gene=cds;inference=protein motif:TMHMM:2.0;product=phosphatidate cytidylyltransferase;protein_id=CAL19715.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1191106	1191945	.	+	.	ID=id2369;Note=Pfam match to entry PF01148 Cytidylyltrans%2CPhosphatidate cytidylyltransferase%2C score 155.80%2C E-value 7.5e-43;gbkey=misc_feature;gene=cds;inference=protein motif:PF01148
AL590842.1	EMBL	sequence_feature	1191121	1191225	.	+	.	ID=id2370;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=cds;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1191268	1191324	.	+	.	ID=id2371;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=cds;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1191343	1191411	.	+	.	ID=id2372;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=cds;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1191454	1191513	.	+	.	ID=id2373;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=cds;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1191550	1191618	.	+	.	ID=id2374;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=cds;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1191676	1191735	.	+	.	ID=id2375;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=cds;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1191817	1191897	.	+	.	ID=id2376;Note=PS01315 Phosphatidate cytidylyltransferase signature.;gbkey=misc_feature;gene=cds;inference=protein motif:ProSite:PS01315
AL590842.1	EMBL	gene	1191980	1193335	.	+	.	ID=gene1048;Name=YPO1051;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1051
AL590842.1	EMBL	CDS	1191980	1193335	.	+	0	ID=cds1025;Parent=gene1048;Dbxref=GOA:Q8ZH59,InterPro:IPR001478,InterPro:IPR004387,InterPro:IPR008915,NCBI_GP:CAL19716.1;Name=CAL19716.1;Note=Similar to Escherichia coli hypothetical 49.1 kDa protein in cdsA-hlpA intergenic region SW:YAEL_ECOLI (P37764) (450 aa) fasta scores: E(): 0%2C 77.6%25 id in 451 aa%2Cand to Neisseria meningitidis putative integral membrane protein NMA0084 TR:Q9JX32 (EMBL:AL162752) (446 aa) fasta scores: E(): 0%2C 39.4%25 id in 452 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL162752;product=putative membrane protein;protein_id=CAL19716.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1191992	1192060	.	+	.	ID=id2377;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1192034	1192063	.	+	.	ID=id2378;Note=PS00142 Neutral zinc metallopeptidases%2C zinc-binding region signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00142
AL590842.1	EMBL	sequence_feature	1192271	1192339	.	+	.	ID=id2379;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1192574	1192816	.	+	.	ID=id2380;Note=Pfam match to entry PF00595 PDZ%2C PDZ domain (Also known as DHR or GLGF).%2C score 46.40%2C E-value 6.2e-10;gbkey=misc_feature;inference=protein motif:PF00595
AL590842.1	EMBL	sequence_feature	1193108	1193176	.	+	.	ID=id2381;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1193258	1193317	.	+	.	ID=id2382;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1193372	1195759	.	+	.	ID=gene1049;Name=YPO1052;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1052
AL590842.1	EMBL	CDS	1193372	1195759	.	+	0	ID=cds1026;Parent=gene1049;Dbxref=GOA:Q8ZH58,InterPro:IPR000184,InterPro:IPR010827,InterPro:IPR023707,NCBI_GP:CAL19717.1;Name=CAL19717.1;Note=Similar to Photorhabdus luminescens outer membrane antigen Oma TR:Q9S341 (EMBL:AJ236920) (797 aa) fasta scores: E(): 0%2C 80.4%25 id in 797 aa%2C and to Haemophilus influenzae protective surface antigen D15 precursor SW:D151_HAEIN (P46024) (797 aa) fasta scores: E(): 0%2C 44.3%25 id in 804 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ236920;product=putative surface antigen;protein_id=CAL19717.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1193378	1195756	.	+	.	ID=id2383;Note=Pfam match to entry PF01103 Bac_surface_Ag%2CBacterial surface antigen%2C score 1444.20%2C E-value 0;gbkey=misc_feature;inference=protein motif:PF01103
AL590842.1	EMBL	sequence_feature	1193390	1193449	.	+	.	ID=id2384;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1195917	1196414	.	+	.	ID=gene1050;Name=ompH;gbkey=Gene;gene=ompH;gene_biotype=protein_coding;locus_tag=YPO1053
AL590842.1	EMBL	CDS	1195917	1196414	.	+	0	ID=cds1027;Parent=gene1050;Dbxref=GOA:P58607,InterPro:IPR005632,InterPro:IPR024930,NCBI_GP:CAL19718.1;Name=CAL19718.1;Note=Similar to Yersinia enterocolitica cationic 19 kDa outer membrane protein precursor OmpH SW:OMPH_YEREN (P31519) (164 aa) fasta scores: E(): 0%2C 93.3%25 id in 165 aa%2Cand to Escherichia coli histone-like protein Hlp-1 precursor SW:HLPA_ECOLI (P11457) (161 aa) fasta scores: E(): 1.3e-30%2C 67.1%25 id in 167 aa;gbkey=CDS;gene=ompH;product=cationic 19 kDa outer membrane protein precursor;protein_id=CAL19718.1;transl_table=11
AL590842.1	EMBL	gene	1196418	1197440	.	+	.	ID=gene1051;Name=firA;gbkey=Gene;gene=firA;gene_biotype=protein_coding;gene_synonym=lpxD,omsA;locus_tag=YPO1054
AL590842.1	EMBL	CDS	1196418	1197440	.	+	0	ID=cds1028;Parent=gene1051;Dbxref=GOA:P58611,InterPro:IPR001451,InterPro:IPR007691,InterPro:IPR011004,InterPro:IPR018357,InterPro:IPR020573,NCBI_GP:CAL19719.1;Name=CAL19719.1;Note=Similar to Escherichia coli UDP-3-o-[3-hydroxymyristoyl] glucosamine N-acyltransferase SW:LPXD_ECOLI (P21645) (340 aa) fasta scores: E(): 0%2C 82.6%25 id in 339 aa%2C and to Yersinia enterocolitica UDP-3-o-[3-hydroxymyristoyl] glucosamine N-acyltransferase SW:LPXD_YEREN (P32203) (339 aa) fasta scores: E(): 0%2C 95.3%25 id in 339 aa;gbkey=CDS;gene=firA;product=UDP-3-o-[3-hydroxymyristoyl] glucosamine N-acyltransferase;protein_id=CAL19719.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1196715	1196801	.	+	.	ID=id2385;Note=PS00101 Hexapeptide-repeat containing-transferases signature.;gbkey=misc_feature;gene=firA;inference=protein motif:ProSite:PS00101
AL590842.1	EMBL	sequence_feature	1196742	1196795	.	+	.	ID=id2386;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 13.90%2CE-value 3.9;gbkey=misc_feature;gene=firA;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	1196796	1196849	.	+	.	ID=id2387;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 22.20%2CE-value 0.012;gbkey=misc_feature;gene=firA;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	1196805	1196891	.	+	.	ID=id2388;Note=PS00101 Hexapeptide-repeat containing-transferases signature.;gbkey=misc_feature;gene=firA;inference=protein motif:ProSite:PS00101
AL590842.1	EMBL	sequence_feature	1196850	1196903	.	+	.	ID=id2389;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 16.70%2CE-value 0.54;gbkey=misc_feature;gene=firA;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	1196904	1196957	.	+	.	ID=id2390;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 18.50%2CE-value 0.15;gbkey=misc_feature;gene=firA;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	1197015	1197068	.	+	.	ID=id2391;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 13.90%2CE-value 3.8;gbkey=misc_feature;gene=firA;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	1197081	1197134	.	+	.	ID=id2392;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 19.10%2CE-value 0.1;gbkey=misc_feature;gene=firA;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	1197090	1197176	.	+	.	ID=id2393;Note=PS00101 Hexapeptide-repeat containing-transferases signature.;gbkey=misc_feature;gene=firA;inference=protein motif:ProSite:PS00101
AL590842.1	EMBL	sequence_feature	1197135	1197188	.	+	.	ID=id2394;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 12.90%2CE-value 7.7;gbkey=misc_feature;gene=firA;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	1197207	1197260	.	+	.	ID=id2395;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 6.50%2C E-value 1e+02;gbkey=misc_feature;gene=firA;inference=protein motif:PF00132
AL590842.1	EMBL	gene	1197598	1198143	.	+	.	ID=gene1052;Name=fabZ;gbkey=Gene;gene=fabZ;gene_biotype=protein_coding;gene_synonym=sefA;locus_tag=YPO1055
AL590842.1	EMBL	CDS	1197598	1198143	.	+	0	ID=cds1029;Parent=gene1052;Dbxref=GOA:Q8ZH57,InterPro:IPR010084,InterPro:IPR013114,InterPro:IPR029069,NCBI_GP:CAL19720.1;Name=CAL19720.1;Note=Similar to Escherichia coli FabZ SW:FABZ_ECOLI (P21774) (151 aa) fasta scores: E(): 0%2C 88.7%25 id in 151 aa%2Cand to Yersinia enterocolitica FabZ SW:FABZ_YEREN (P32205) (201 aa) fasta scores: E(): 0%2C 90.1%25 id in 181 aa;gbkey=CDS;gene=fabZ;product=(3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase (EC 4.2.1.-);protein_id=CAL19720.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1197619	1198017	.	+	.	ID=id2396;Note=Pfam match to entry PF01377 Thioester_dehyd%2CThioester dehydrase%2C score 286.40%2C E-value 3.5e-82;gbkey=misc_feature;gene=fabZ;inference=protein motif:PF01377
AL590842.1	EMBL	gene	1198147	1198935	.	+	.	ID=gene1053;Name=lpxA;gbkey=Gene;gene=lpxA;gene_biotype=protein_coding;locus_tag=YPO1056
AL590842.1	EMBL	CDS	1198147	1198935	.	+	0	ID=cds1030;Parent=gene1053;Dbxref=GOA:Q8ZH56,InterPro:IPR001451,InterPro:IPR010137,InterPro:IPR011004,InterPro:IPR018357,InterPro:IPR029098,NCBI_GP:CAL19721.1;Name=CAL19721.1;Note=Similar to Escherichia coli acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase LpxA SW:LPXA_ECOLI (P10440) (262 aa) fasta scores: E(): 0%2C 81.3%25 id in 262 aa%2C and to Yersinia enterocolitica acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase LpxA SW:LPXA_YEREN (P32201) (262 aa) fasta scores: E(): 0%2C 90.1%25 id in 262 aa;gbkey=CDS;gene=lpxA;product=acyl-[acyl-carrier-protein]--UDP-N-acetylglucosa m ine O-acyltransferase;protein_id=CAL19721.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1198195	1198248	.	+	.	ID=id2397;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 21.70%2CE-value 0.017;gbkey=misc_feature;gene=lpxA;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	1198204	1198290	.	+	.	ID=id2398;Note=PS00101 Hexapeptide-repeat containing-transferases signature.;gbkey=misc_feature;gene=lpxA;inference=protein motif:ProSite:PS00101
AL590842.1	EMBL	sequence_feature	1198249	1198302	.	+	.	ID=id2399;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 11.10%2CE-value 24;gbkey=misc_feature;gene=lpxA;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	1198303	1198356	.	+	.	ID=id2400;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 8.50%2C E-value 54;gbkey=misc_feature;gene=lpxA;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	1198393	1198446	.	+	.	ID=id2401;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 7.90%2C E-value 65;gbkey=misc_feature;gene=lpxA;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	1198468	1198521	.	+	.	ID=id2402;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 0.80%2C E-value 5.9e+02;gbkey=misc_feature;gene=lpxA;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	1198522	1198575	.	+	.	ID=id2403;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 14.40%2CE-value 2.7;gbkey=misc_feature;gene=lpxA;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	1198594	1198647	.	+	.	ID=id2404;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 17.80%2CE-value 0.26;gbkey=misc_feature;gene=lpxA;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	1198603	1198689	.	+	.	ID=id2405;Note=PS00101 Hexapeptide-repeat containing-transferases signature.;gbkey=misc_feature;gene=lpxA;inference=protein motif:ProSite:PS00101
AL590842.1	EMBL	gene	1198939	1200123	.	+	.	ID=gene1054;Name=lpxB;gbkey=Gene;gene=lpxB;gene_biotype=protein_coding;gene_synonym=pgsB;locus_tag=YPO1057
AL590842.1	EMBL	CDS	1198939	1200123	.	+	0	ID=cds1031;Parent=gene1054;Dbxref=GOA:Q8ZH55,InterPro:IPR003835,NCBI_GP:CAL19722.1;Name=CAL19722.1;Note=Similar to Escherichia coli lipid-A-disaccharide synthase LpxB SW:LPXB_ECOLI (P10441) (382 aa) fasta scores: E(): 0%2C 82.2%25 id in 377 aa;gbkey=CDS;gene=lpxB;product=lipid-A-disaccharide synthase;protein_id=CAL19722.1;transl_table=11
AL590842.1	EMBL	gene	1200120	1200716	.	+	.	ID=gene1055;Name=b0183;gbkey=Gene;gene=b0183;gene_biotype=protein_coding;gene_synonym=rnhB;locus_tag=YPO1058
AL590842.1	EMBL	CDS	1200120	1200716	.	+	0	ID=cds1032;Parent=gene1055;Dbxref=GOA:Q8ZH54,InterPro:IPR001352,InterPro:IPR012337,InterPro:IPR022898,InterPro:IPR024567,NCBI_GP:CAL19723.1;Name=CAL19723.1;Note=Similar to Escherichia coli ribonuclease hII SW:RNH2_ECOLI (P10442) (198 aa) fasta scores: E(): 0%2C 84.5%25 id in 193 aa;gbkey=CDS;gene=b0183;product=ribonuclease HII;protein_id=CAL19723.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1200159	1200692	.	+	.	ID=id2406;Note=Pfam match to entry PF01351 RNase_HII%2C Ribonuclease HII%2C score 305.80%2C E-value 5.1e-88;gbkey=misc_feature;gene=b0183;inference=protein motif:PF01351
AL590842.1	EMBL	gene	1200846	1204361	.	+	.	ID=gene1056;Name=dnaE;gbkey=Gene;gene=dnaE;gene_biotype=protein_coding;gene_synonym=polC;locus_tag=YPO1059
AL590842.1	EMBL	CDS	1200846	1204361	.	+	0	ID=cds1033;Parent=gene1056;Dbxref=GOA:Q7CH18,InterPro:IPR003141,InterPro:IPR004013,InterPro:IPR004365,InterPro:IPR004805,InterPro:IPR011708,InterPro:IPR012340,InterPro:IPR016195,InterPro:IPR029460,UniProtKB/TrEMBL:Q7CH18,NCBI_GP:CAL19724.1;Name=CAL19724.1;Note=Similar to Escherichia coli DNA polymerase III%2Calpha chain DnaE SW:DP3A_ECOLI (P10443) (1160 aa) fasta scores: E(): 0%2C 89.0%25 id in 1160 aa;gbkey=CDS;gene=dnaE;product=DNA polymerase III%2C alpha chain;protein_id=CAL19724.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1200897	1201094	.	+	.	ID=id2407;Note=Pfam match to entry PF02231 PHP_N%2C PHP domain N-terminal region%2C score 115.50%2C E-value 1e-30;gbkey=misc_feature;gene=dnaE;inference=protein motif:PF02231
AL590842.1	EMBL	sequence_feature	1203873	1204097	.	+	.	ID=id2408;Note=Pfam match to entry PF01336 tRNA_anti%2C tRNA synthetase anti-codon binding domain%2C score 43.00%2C E-value 6.7e-09;gbkey=misc_feature;gene=dnaE;inference=protein motif:PF01336
AL590842.1	EMBL	gene	1204374	1205333	.	+	.	ID=gene1057;Name=accA;gbkey=Gene;gene=accA;gene_biotype=protein_coding;locus_tag=YPO1060
AL590842.1	EMBL	CDS	1204374	1205333	.	+	0	ID=cds1034;Parent=gene1057;Dbxref=GOA:Q8ZH52,InterPro:IPR001095,InterPro:IPR011763,InterPro:IPR029045,NCBI_GP:CAL19725.1;Name=CAL19725.1;Note=Similar to Escherichia coli acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha AccA SW:ACCA_ECOLI (P30867) (318 aa) fasta scores: E(): 0%2C 90.5%25 id in 317 aa;gbkey=CDS;gene=accA;product=acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha;protein_id=CAL19725.1;transl_table=11
AL590842.1	EMBL	gene	1205517	1205915	.	+	.	ID=gene1058;Name=YPO1061;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1061
AL590842.1	EMBL	CDS	1205517	1205915	.	+	0	ID=cds1035;Parent=gene1058;Dbxref=GOA:Q7CH20,InterPro:IPR004360,InterPro:IPR029068,UniProtKB/TrEMBL:Q7CH20,NCBI_GP:CAL19726.1;Name=CAL19726.1;Note=Similar to Escherichia coli hypothetical protein YaeR SW:YAER_ECOLI (P52096) (129 aa) fasta scores: E(): 0%2C71.1%25 id in 128 aa%2C and to Vibrio cholerae glyoxylase I family protein VCA0890 TR:Q9KL58 (EMBL:AE004416) (127 aa) fasta scores: E(): 1.1e-27%2C 59.2%25 id in 125 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004416;product=conserved hypothetical protein;protein_id=CAL19726.1;transl_table=11
AL590842.1	EMBL	gene	1205917	1207299	.	+	.	ID=gene1059;Name=YPO1062;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1062
AL590842.1	EMBL	CDS	1205917	1207299	.	+	0	ID=cds1036;Parent=gene1059;Dbxref=GOA:Q8ZH50,InterPro:IPR011063,InterPro:IPR012094,InterPro:IPR012795,InterPro:IPR012796,InterPro:IPR014729,InterPro:IPR015262,InterPro:IPR020825,NCBI_GP:CAL19727.1;Name=CAL19727.1;Note=Similar to Escherichia coli putative cell cycle protein MesJ SW:MESJ_ECOLI (P52097) (432 aa) fasta scores: E(): 0%2C 55.2%25 id in 440 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19727.1;transl_table=11
AL590842.1	EMBL	gene	1207536	1207853	.	+	.	ID=gene1060;Name=YPO1063;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1063
AL590842.1	EMBL	CDS	1207536	1207853	.	+	0	ID=cds1037;Parent=gene1060;Dbxref=GOA:Q7CH22,InterPro:IPR003088,InterPro:IPR008168,InterPro:IPR009056,UniProtKB/TrEMBL:Q7CH22,NCBI_GP:CAL19728.1;Name=CAL19728.1;Note=Similar to Vibrio cholerae cytochrome C554 VC2241 TR:Q9KPX1 (EMBL:AE004296) (107 aa) fasta scores: E(): 1.6e-14%2C 50.5%25 id in 105 aa%2C and to Shewanella violacea soluble cytochrome CB CytCB TR:Q9RHJ5 (EMBL:AB032405) (206 aa) fasta scores: E(): 9.1e-10%2C 37.7%25 id in 106 aa%2C and to Pseudomonas aeruginosa cytochrome C4 precursor PA5490 TR:AAG08875 (EMBL:AE004961) (201 aa) fasta scores: E(): 2.5e-09%2C 40.4%25 id in 104 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004961;product=putative cytochrome;protein_id=CAL19728.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1207602	1207847	.	+	.	ID=id2409;Note=Pfam match to entry PF00034 cytochrome_c%2C Cytochrome c%2C score 47.20%2C E-value 3.6e-10;gbkey=misc_feature;inference=protein motif:PF00034
AL590842.1	EMBL	sequence_feature	1207638	1207655	.	+	.	ID=id2410;Note=PS00190 Cytochrome c family heme-binding site signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00190
AL590842.1	EMBL	gene	1208118	1208378	.	-	.	ID=gene1061;Name=YPO1064;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1064
AL590842.1	EMBL	CDS	1208118	1208378	.	-	0	ID=cds1038;Parent=gene1061;Dbxref=InterPro:IPR009778,InterPro:IPR023534,UniProtKB/TrEMBL:Q7CH23,NCBI_GP:CAL19729.1;Name=CAL19729.1;Note=Similar to Escherichia coli ROF protein SW:ROF_ECOLI (P52098) (84 aa) fasta scores: E(): 1.4e-26%2C 73.8%25 id in 84 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19729.1;transl_table=11
AL590842.1	EMBL	gene	1208365	1208565	.	-	.	ID=gene1062;Name=YPO1064a;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1064a
AL590842.1	EMBL	CDS	1208365	1208565	.	-	0	ID=cds1039;Parent=gene1062;Dbxref=InterPro:IPR009624,NCBI_GP:CAL19730.1;Name=CAL19730.1;Note=Similar to Escherichia coli hypothetical protein YaeP SW:YAEP_ECOLI (P52099) (66 aa) fasta scores: E(): 1.5e-18%2C 74.2%25 id in 66 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19730.1;transl_table=11
AL590842.1	EMBL	gene	1208807	1209355	.	+	.	ID=gene1063;Name=YPO1065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1065
AL590842.1	EMBL	CDS	1208807	1209355	.	+	0	ID=cds1040;Parent=gene1063;Dbxref=InterPro:IPR009822,InterPro:IPR011335,UniProtKB/TrEMBL:Q0WHX9,NCBI_GP:CAL19731.1;Name=CAL19731.1;Note=Similar to Escherichia coli hypothetical protein YaeQ SW:YAEQ_ECOLI (P52100) (181 aa) fasta scores: E(): 0%2C61.8%25 id in 178 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19731.1;transl_table=11
AL590842.1	EMBL	gene	1209358	1209774	.	+	.	ID=gene1064;Name=YPO1066;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1066
AL590842.1	EMBL	CDS	1209358	1209774	.	+	0	ID=cds1041;Parent=gene1064;Dbxref=GOA:Q0WHX8,InterPro:IPR000352,UniProtKB/TrEMBL:Q0WHX8,NCBI_GP:CAL19732.1;Name=CAL19732.1;Note=Similar to Escherichia coli hypothetical protein YaeJ SW:YAEJ_ECOLI (P40711) (140 aa) fasta scores: E(): 0%2C65.2%25 id in 135 aa%2C and to Pseudomonas putida hypothetical protein SW:YAEJ_PSEPU (P45388) (137 aa) fasta scores: E(): 8.6e-31%2C 65.2%25 id in 135 aa%2C and to Streptomyces coelicolor hypothetical protein SCD95A.11 TR:Q9KXW3 (EMBL:AL357432) (145 aa) fasta scores: E(): 7.4e-13%2C 41.5%25 id in 135 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL357432;product=conserved hypothetical protein;protein_id=CAL19732.1;transl_table=11
AL590842.1	EMBL	gene	1209814	1210542	.	+	.	ID=gene1065;Name=cutF;gbkey=Gene;gene=cutF;gene_biotype=protein_coding;gene_synonym=nlpE;locus_tag=YPO1067
AL590842.1	EMBL	CDS	1209814	1210542	.	+	0	ID=cds1042;Parent=gene1065;Dbxref=InterPro:IPR007298,UniProtKB/TrEMBL:Q7CH24,NCBI_GP:CAL19733.1;Name=CAL19733.1;Note=Similar to Escherichia coli copper homeostasis protein CutF precursor SW:CUTF_ECOLI (P40710) (236 aa) fasta scores: E(): 0%2C 48.3%25 id in 230 aa;gbkey=CDS;gene=cutF;product=putative copper homeostasis lipoprotein;protein_id=CAL19733.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1209886	1209918	.	+	.	ID=id2411;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=cutF;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	1210676	1212394	.	-	.	ID=gene1066;Name=drpA;gbkey=Gene;gene=drpA;gene_biotype=protein_coding;gene_synonym=proS;locus_tag=YPO1068
AL590842.1	EMBL	CDS	1210676	1212394	.	-	0	ID=cds1043;Parent=gene1066;Dbxref=GOA:Q7CH25,InterPro:IPR002314,InterPro:IPR002316,InterPro:IPR004154,InterPro:IPR004500,InterPro:IPR006195,InterPro:IPR007214,InterPro:IPR023717,NCBI_GP:CAL19734.1;Name=CAL19734.1;Note=Similar to Escherichia coli prolyl-tRNA synthetase SW:SYP_ECOLI (P16659) (572 aa) fasta scores: E(): 0%2C 84.2%25 id in 571 aa;gbkey=CDS;gene=drpA;product=prolyl-tRNA synthetase;protein_id=CAL19734.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1210730	1212010	.	-	.	ID=id2412;Note=Pfam match to entry PF00587 tRNA-synt_2b%2C tRNA synthetase class II (G%2C H%2C P%2C S and T)%2C score 244.70%2CE-value 1.3e-69;gbkey=misc_feature;gene=drpA;inference=protein motif:PF00587
AL590842.1	EMBL	sequence_feature	1211918	1211980	.	-	.	ID=id2413;Note=PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.;gbkey=misc_feature;gene=drpA;inference=protein motif:ProSite:PS00179
AL590842.1	EMBL	gene	1212498	1213205	.	-	.	ID=gene1067;Name=YPO1069;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1069
AL590842.1	EMBL	CDS	1212498	1213205	.	-	0	ID=cds1044;Parent=gene1067;Dbxref=InterPro:IPR001378,InterPro:IPR023368,InterPro:IPR023370,UniProtKB/TrEMBL:Q7CH26,NCBI_GP:CAL19735.1;Name=CAL19735.1;Note=Similar to Escherichia coli hypothetical protein YaeB SW:YAEB_ECOLI (P28634) (235 aa) fasta scores: E(): 0%2C71.1%25 id in 235 aa%2C and to Vibrio cholerae hypothetical protein VC0876 TR:Q9KTM6 (EMBL:AE004172) (231 aa) fasta scores: E(): 0%2C 50.0%25 id in 232 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004172;product=conserved hypothetical protein;protein_id=CAL19735.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1212774	1213154	.	-	.	ID=id2414;Note=Pfam match to entry PF01980 UPF0066%2C Uncharacterised protein family UPF0066%2C score 254.10%2C E-value 2e-72;gbkey=misc_feature;inference=protein motif:PF01980
AL590842.1	EMBL	sequence_feature	1212912	1212947	.	-	.	ID=id2415;Note=PS01318 Uncharacterized protein family UPF0066 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01318
AL590842.1	EMBL	gene	1213202	1213609	.	-	.	ID=gene1068;Name=rcsF;gbkey=Gene;gene=rcsF;gene_biotype=protein_coding;locus_tag=YPO1070
AL590842.1	EMBL	CDS	1213202	1213609	.	-	0	ID=cds1045;Parent=gene1068;Dbxref=UniProtKB/TrEMBL:Q7CH27,NCBI_GP:CAL19736.1;Name=CAL19736.1;Note=May be involved in regulation of exopolysaccharide biosynthesis. Similar to Escherichia coli RcsF protein rcsF SW:RCSF_ECOLI (P28633) (133 aa) fasta scores: E(): 2.1e-27%2C63.5%25 id in 137 aa;gbkey=CDS;gene=rcsF;product=putative lipoprotein;protein_id=CAL19736.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1213562	1213594	.	-	.	ID=id2416;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=rcsF;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	1213727	1214542	.	-	.	ID=gene1069;Name=YPO1071;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1071
AL590842.1	EMBL	CDS	1213727	1214542	.	-	0	ID=cds1046;Parent=gene1069;Dbxref=GOA:Q8ZH40,InterPro:IPR004872,NCBI_GP:CAL19737.1;Name=CAL19737.1;Note=Similar to Escherichia coli putative lipoprotein YaeC precursor SW:YAEC_ECOLI (P28635) (271 aa) fasta scores: E(): 0%2C 90.4%25 id in 271 aa%2C and to Vibrio cholerae lipoprotein VC0905 TR:Q9KTJ7 (EMBL:AE004174) (275 aa) fasta scores: E(): 0%2C 68.3%25 id in 271 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004174;product=putative lipoprotein;protein_id=CAL19737.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1214474	1214506	.	-	.	ID=id2417;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	1214606	1215259	.	-	.	ID=gene1070;Name=YPO1072;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1072
AL590842.1	EMBL	CDS	1214606	1215259	.	-	0	ID=cds1047;Parent=gene1070;Dbxref=GOA:Q8ZH39,InterPro:IPR000515,NCBI_GP:CAL19738.1;Name=CAL19738.1;Note=Similar to Escherichia coli hypothetical ABC transporter permease protein YaeE SW:YAEE_ECOLI (P31547) (217 aa) fasta scores: E(): 0%2C 90.8%25 id in 217 aa%2C and to Vibrio cholerae ABC transporter%2C permease protein VC0906 TR:Q9KTJ6 (EMBL:AE004174) (225 aa) fasta scores: E(): 0%2C54.3%25 id in 210 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004174;product=ABC transporter permease protein;protein_id=CAL19738.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1214651	1214716	.	-	.	ID=id2418;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1214717	1214929	.	-	.	ID=id2419;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 66.00%2C E-value 8.1e-16;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	1214762	1214827	.	-	.	ID=id2420;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1214840	1214926	.	-	.	ID=id2421;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	1214948	1215013	.	-	.	ID=id2422;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1215029	1215094	.	-	.	ID=id2423;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1215134	1215199	.	-	.	ID=id2424;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1215252	1216283	.	-	.	ID=gene1071;Name=abc;gbkey=Gene;gene=abc;gene_biotype=protein_coding;locus_tag=YPO1073
AL590842.1	EMBL	CDS	1215252	1216283	.	-	0	ID=cds1048;Parent=gene1071;Dbxref=GOA:Q8ZH38,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR012692,InterPro:IPR017871,InterPro:IPR017908,InterPro:IPR018449,InterPro:IPR026253,InterPro:IPR027417,NCBI_GP:CAL19739.1;Name=CAL19739.1;Note=Similar to Escherichia coli ATP-binding protein Abc SW:ABC_ECOLI (P30750) (343 aa) fasta scores: E(): 0%2C 80.2%25 id in 343 aa;gbkey=CDS;gene=abc;product=ABC transporter ATP-binding protein;protein_id=CAL19739.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1215633	1216193	.	-	.	ID=id2425;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 258.10%2C E-value 1.2e-73;gbkey=misc_feature;gene=abc;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1215819	1215863	.	-	.	ID=id2426;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=abc;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	1216149	1216172	.	-	.	ID=id2427;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=abc;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1216470	1217036	.	+	.	ID=gene1072;Name=YPO1074;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1074
AL590842.1	EMBL	CDS	1216470	1217036	.	+	0	ID=cds1049;Parent=gene1072;Dbxref=GOA:Q8ZH37,InterPro:IPR004446,InterPro:IPR006543,InterPro:IPR006549,InterPro:IPR023214,NCBI_GP:CAL19740.1;Name=CAL19740.1;Note=Similar to Escherichia coli hypothetical protein YaeD SW:YAED_ECOLI (P31546) (191 aa) fasta scores: E(): 0%2C80.3%25 id in 188 aa%2C and to Escherichia coli O157:H7 phosphatase YaeD TR:BAA93568 (EMBL:AB035926) (191 aa) fasta scores: E(): 0%2C 80.3%25 id in 188 aa;gbkey=CDS;inference=similar to sequence:INSDC:AB035926;product=conserved hypothetical protein;protein_id=CAL19740.1;transl_table=11
AL590842.1	EMBL	gene	1217505	1218993	.	+	.	ID=gene1073;Name=16S_rRNA;gbkey=Gene;gene=16S_rRNA;gene_biotype=rRNA
AL590842.1	EMBL	rRNA	1217505	1218993	.	+	.	ID=rna20;Parent=gene1073;Note=match to 16S_rRNA 1..1489 (EMBL:YPE16SA);gbkey=rRNA;gene=16S_rRNA
AL590842.1	EMBL	exon	1217505	1218993	.	+	.	ID=id2428;Parent=rna20;Note=match to 16S_rRNA 1..1489 (EMBL:YPE16SA);gbkey=rRNA;gene=16S_rRNA
AL590842.1	EMBL	tRNA	1219157	1219232	.	+	.	ID=rna21;Note=tRNA Glu anticodon TTC%2C Cove score 56.95;gbkey=tRNA;product=tRNA-Glu
AL590842.1	EMBL	exon	1219157	1219232	.	+	.	ID=id2429;Parent=rna21;Note=tRNA Glu anticodon TTC%2C Cove score 56.95;gbkey=tRNA;product=tRNA-Glu
AL590842.1	EMBL	gene	1219485	1222391	.	+	.	ID=gene1074;Name=23S_rRNA;gbkey=Gene;gene=23S_rRNA;gene_biotype=rRNA
AL590842.1	EMBL	rRNA	1219485	1222391	.	+	.	ID=rna22;Parent=gene1074;Note=match to 23S_rRNA 1..2906 (Y. enterocolitica 23S EMBL:U77925);gbkey=rRNA;gene=23S_rRNA
AL590842.1	EMBL	exon	1219485	1222391	.	+	.	ID=id2430;Parent=rna22;Note=match to 23S_rRNA 1..2906 (Y. enterocolitica 23S EMBL:U77925);gbkey=rRNA;gene=23S_rRNA
AL590842.1	EMBL	gene	1222391	1222624	.	+	.	ID=gene1075;Name=5S_rRNA;gbkey=Gene;gene=5S_rRNA;gene_biotype=rRNA
AL590842.1	EMBL	rRNA	1222391	1222624	.	+	.	ID=rna23;Parent=gene1075;Note=match to 5SrRNA 1..234 blast score 1131 percent identity 98 (incl. 23S-5S spacer);gbkey=rRNA;gene=5S_rRNA
AL590842.1	EMBL	exon	1222391	1222624	.	+	.	ID=id2431;Parent=rna23;Note=match to 5SrRNA 1..234 blast score 1131 percent identity 98 (incl. 23S-5S spacer);gbkey=rRNA;gene=5S_rRNA
AL590842.1	EMBL	tRNA	1222742	1222818	.	+	.	ID=rna24;Note=tRNA Asp anticodon GTC%2C Cove score 90.47;gbkey=tRNA;product=tRNA-Asp
AL590842.1	EMBL	exon	1222742	1222818	.	+	.	ID=id2432;Parent=rna24;Note=tRNA Asp anticodon GTC%2C Cove score 90.47;gbkey=tRNA;product=tRNA-Asp
AL590842.1	EMBL	gene	1223177	1223980	.	+	.	ID=gene1076;Name=YPO1075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1075
AL590842.1	EMBL	CDS	1223177	1223980	.	+	0	ID=cds1050;Parent=gene1076;Dbxref=GOA:Q8ZH36,InterPro:IPR001395,InterPro:IPR018170,InterPro:IPR020471,InterPro:IPR023210,NCBI_GP:CAL19741.1;Name=CAL19741.1;Note=Similar to Escherichia coli hypothetical oxidoreductase in aspU-mltD intergenic region YafB SW:YAFB_ECOLI (P30863) (267 aa) fasta scores: E(): 0%2C 74.9%25 id in 267 aa%2C and to Corynebacterium sp 2%2C5-diketo-D-gluconic acid reductase TR:P06632 (EMBL:M12799) (278 aa) fasta scores: E(): 6.3e-31%2C 41.6%25 id in 255 aa;gbkey=CDS;inference=similar to sequence:INSDC:M12799;product=putative aldo/keto reductase;protein_id=CAL19741.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1223177	1223941	.	+	.	ID=id2433;Note=Pfam match to entry PF00248 aldo_ket_red%2C Aldo/keto reductase family%2C score 357.70%2C E-value 1.3e-103;gbkey=misc_feature;inference=protein motif:PF00248
AL590842.1	EMBL	sequence_feature	1223261	1223314	.	+	.	ID=id2434;Note=PS00798 Aldo/keto reductase family signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS00798
AL590842.1	EMBL	sequence_feature	1223516	1223569	.	+	.	ID=id2435;Note=PS00062 Aldo/keto reductase family signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00062
AL590842.1	EMBL	gene	1224015	1224479	.	+	.	ID=gene1077;Name=YPO1076;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1076
AL590842.1	EMBL	CDS	1224015	1224479	.	+	0	ID=cds1051;Parent=gene1077;Dbxref=UniProtKB/TrEMBL:Q74S63,NCBI_GP:CAL19742.1;Name=CAL19742.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19742.1;transl_table=11
AL590842.1	EMBL	gene	1224840	1225622	.	+	.	ID=gene1078;Name=YPO1077;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1077
AL590842.1	EMBL	CDS	1224840	1225622	.	+	0	ID=cds1052;Parent=gene1078;Dbxref=GOA:Q8ZH34,InterPro:IPR005135,InterPro:IPR022958,NCBI_GP:CAL19743.1;Name=CAL19743.1;Note=Similar to Escherichia coli hypothetical protein YafD SW:YAFD_ECOLI (P30865) (259 aa) fasta scores: E(): 0%2C75.2%25 id in 254 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19743.1;transl_table=11
AL590842.1	EMBL	gene	1225664	1227091	.	-	.	ID=gene1079;Name=dniR;gbkey=Gene;gene=dniR;gene_biotype=protein_coding;gene_synonym=mltD;locus_tag=YPO1078
AL590842.1	EMBL	CDS	1225664	1227091	.	-	0	ID=cds1053;Parent=gene1079;Dbxref=GOA:Q0WHW6,InterPro:IPR000189,InterPro:IPR008258,InterPro:IPR018392,InterPro:IPR023346,UniProtKB/TrEMBL:Q0WHW6,NCBI_GP:CAL19744.1;Name=CAL19744.1;Note=Similar to Escherichia coli membrane-bound lytic murein transglycosylase D precursor MltD SW:MLTD_ECOLI (P23931) (452 aa) fasta scores: E(): 0%2C 63.4%25 id in 470 aa;gbkey=CDS;gene=dniR;product=membrane-bound lytic murein transglycosylase D precursor;protein_id=CAL19744.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1225694	1225828	.	-	.	ID=id2436;Note=Pfam match to entry PF01476 LysM%2C Putative peptidoglycan binding domain%2C score 44.10%2C E-value 3.2e-09;gbkey=misc_feature;gene=dniR;inference=protein motif:PF01476
AL590842.1	EMBL	sequence_feature	1225856	1225987	.	-	.	ID=id2437;Note=Pfam match to entry PF01476 LysM%2C Putative peptidoglycan binding domain%2C score 62.30%2C E-value 1e-14;gbkey=misc_feature;gene=dniR;inference=protein motif:PF01476
AL590842.1	EMBL	sequence_feature	1226372	1226722	.	-	.	ID=id2438;Note=Pfam match to entry PF01464 SLT%2C Transglycosylase SLT domain%2C score 122.70%2C E-value 6.7e-33;gbkey=misc_feature;gene=dniR;inference=protein motif:PF01464
AL590842.1	EMBL	sequence_feature	1226579	1226665	.	-	.	ID=id2439;Note=PS00922 Prokaryotic transglycosylases signature.;gbkey=misc_feature;gene=dniR;inference=protein motif:ProSite:PS00922
AL590842.1	EMBL	sequence_feature	1227005	1227037	.	-	.	ID=id2440;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=dniR;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	1227124	1227879	.	-	.	ID=gene1080;Name=gloB;gbkey=Gene;gene=gloB;gene_biotype=protein_coding;locus_tag=YPO1079
AL590842.1	EMBL	CDS	1227124	1227879	.	-	0	ID=cds1054;Parent=gene1080;Dbxref=GOA:Q0WHW5,InterPro:IPR001279,InterPro:IPR017782,NCBI_GP:CAL19745.1;Name=CAL19745.1;Note=Similar to Escherichia coli probable hydroxyacylglutathione hydrolase GloB SW:GLO2_ECOLI (Q47677) (251 aa) fasta scores: E(): 0%2C 57.4%25 id in 251 aa%2Cand to Arabidopsis thaliana hydroxyacylglutathione hydrolase%2C mitochondrial precursor Glx2-1 SW:GL2M_ARATH (O24495) (331 aa) fasta scores: E(): 2.9e-32%2C 39.0%25 id in 236 aa;gbkey=CDS;gene=gloB;product=putative hydroxyacylglutathione hydrolase;protein_id=CAL19745.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1227385	1227861	.	-	.	ID=id2441;Note=Pfam match to entry PF00753 lactamase_B%2CMetallo-beta-lactamase superfamily%2C score 162.10%2C E-value 9.3e-45;gbkey=misc_feature;gene=gloB;inference=protein motif:PF00753
AL590842.1	EMBL	gene	1227924	1228643	.	+	.	ID=gene1081;Name=YPO1080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1080
AL590842.1	EMBL	CDS	1227924	1228643	.	+	0	ID=cds1055;Parent=gene1081;Dbxref=GOA:Q7CH29,InterPro:IPR013216,InterPro:IPR029063,UniProtKB/TrEMBL:Q7CH29,NCBI_GP:CAL19746.1;Name=CAL19746.1;Note=Similar to Escherichia coli hypothetical protein YafS SW:YAFS_ECOLI (P75672) (240 aa) fasta scores: E(): 0%2C63.6%25 id in 236 aa%2C and to Vibrio cholerae hypothetical protein VC2235 TR:Q9KPX7 (EMBL:AE004295) (245 aa) fasta scores: E(): 0%2C 44.2%25 id in 233 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004295;product=conserved hypothetical protein;protein_id=CAL19746.1;transl_table=11
AL590842.1	EMBL	gene	1228698	1229162	.	-	.	ID=gene1082;Name=dasF;gbkey=Gene;gene=dasF;gene_biotype=protein_coding;gene_synonym=herA,rnh,rnhA,sdrA;locus_tag=YPO1081
AL590842.1	EMBL	CDS	1228698	1229162	.	-	0	ID=cds1056;Parent=gene1082;Dbxref=GOA:Q8ZH30,InterPro:IPR002156,InterPro:IPR012337,InterPro:IPR022892,NCBI_GP:CAL19747.1;Name=CAL19747.1;Note=Similar to Escherichia coli ribonuclease HI SW:RNH_ECOLI (P00647) (155 aa) fasta scores: E(): 0%2C 84.8%25 id in 151 aa;gbkey=CDS;gene=dasF;product=ribonuclease HI;protein_id=CAL19747.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1228737	1229159	.	-	.	ID=id2442;Note=Pfam match to entry PF00075 rnaseH%2C RNase H%2C score 227.00%2C E-value 2.8e-64;gbkey=misc_feature;gene=dasF;inference=protein motif:PF00075
AL590842.1	EMBL	gene	1229232	1229996	.	+	.	ID=gene1083;Name=dnaQ;gbkey=Gene;gene=dnaQ;gene_biotype=protein_coding;gene_synonym=mutD;locus_tag=YPO1082
AL590842.1	EMBL	CDS	1229232	1229996	.	+	0	ID=cds1057;Parent=gene1083;Dbxref=GOA:Q7CH30,InterPro:IPR006054,InterPro:IPR006055,InterPro:IPR006309,InterPro:IPR012337,InterPro:IPR013520,UniProtKB/TrEMBL:Q7CH30,NCBI_GP:CAL19748.1;Name=CAL19748.1;Note=Similar to Escherichia coli DNA polymerase III%2Cepsilon chain SW:DP3E_ECOLI (P03007) (243 aa) fasta scores: E(): 0%2C 75.9%25 id in 237 aa;gbkey=CDS;gene=dnaQ;product=DNA polymerase III%2C epsilon chain;protein_id=CAL19748.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1229253	1229780	.	+	.	ID=id2443;Note=Pfam match to entry PF00929 Exonuclease%2CExonuclease%2C score 171.30%2C E-value 1.6e-47;gbkey=misc_feature;gene=dnaQ;inference=protein motif:PF00929
AL590842.1	EMBL	tRNA	1230109	1230185	.	+	.	ID=rna25;Note=tRNA Asp anticodon GTC%2C Cove score 94.51;gbkey=tRNA;product=tRNA-Asp
AL590842.1	EMBL	exon	1230109	1230185	.	+	.	ID=id2444;Parent=rna25;Note=tRNA Asp anticodon GTC%2C Cove score 94.51;gbkey=tRNA;product=tRNA-Asp
AL590842.1	EMBL	gene	1230242	1231726	.	-	.	ID=gene1084;Name=YPO1083;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1083
AL590842.1	EMBL	CDS	1230242	1231726	.	-	0	ID=cds1058;Parent=gene1084;Dbxref=GOA:Q0WHW1,InterPro:IPR001248,UniProtKB/TrEMBL:Q0WHW1,NCBI_GP:CAL19749.1;Name=CAL19749.1;Note=Similar to Pseudomonas aeruginosa probable permease TR:AAG03865 (EMBL:AE004485) (575 aa) fasta scores: E(): 0%2C39.1%25 id in 465 aa%2C and to Streptomyces coelicolor putative transmembrane transporter SC1A6.06 TR:O69811 (EMBL:AL023496) (522 aa) fasta scores: E(): 0%2C 32.6%25 id in 481 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL023496;product=putative permease;protein_id=CAL19749.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1230305	1230370	.	-	.	ID=id2445;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1230341	1231648	.	-	.	ID=id2446;Note=Pfam match to entry PF02133 Transp_cyt_pur%2CPermeases for cytosine/purines%2C uracil%2C thiamine%2Callantoin%2C score 272.50%2C E-value 1.8e-78;gbkey=misc_feature;inference=protein motif:PF02133
AL590842.1	EMBL	sequence_feature	1230383	1230448	.	-	.	ID=id2447;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1230536	1230601	.	-	.	ID=id2448;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1230614	1230679	.	-	.	ID=id2449;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1230719	1230784	.	-	.	ID=id2450;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1230845	1230910	.	-	.	ID=id2451;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1230971	1231036	.	-	.	ID=id2452;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1231091	1231156	.	-	.	ID=id2453;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1231196	1231261	.	-	.	ID=id2454;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1231307	1231372	.	-	.	ID=id2455;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1231466	1231531	.	-	.	ID=id2456;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1231547	1231612	.	-	.	ID=id2457;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	pseudogene	1232065	1232283	.	+	.	ID=gene1085;Name=YPO1084;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO1084;pseudo=true
AL590842.1	EMBL	CDS	1232065	1232283	.	+	0	ID=cds1059;Parent=gene1085;Note=Appears to have been interrupted by the insertion of downstream IS100. Similar to N-terminus of Pseudomonas aeruginosa hypothetical protein TR:AAG04906 (EMBL:AE004580) (308 aa) fasta scores: E(): 6.7e-13%2C 56.5%25 id in 69 aa%2C and to N-terminus of Schizosaccharomyces pombe hypothetical 36.2 kDa protein C19G12.03 in chromosome I SPAC19G12.03 TR:O13842 (EMBL:Z97209) (320 aa) fasta scores: E(): 3.6e-06%2C 44.4%25 id in 63 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z97209;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	repeat_region	1232283	1234236	.	-	.	ID=id2458;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	1232283	1232310	.	+	.	ID=id2459;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1232349	1233131	.	-	.	ID=gene1086;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO1085
AL590842.1	EMBL	CDS	1232349	1233131	.	-	0	ID=cds1060;Parent=gene1086;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL19751.1;Name=CAL19751.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL19751.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1232424	1232963	.	-	.	ID=id2460;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	1232781	1232804	.	-	.	ID=id2461;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1233128	1234150	.	-	.	ID=gene1087;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO1086
AL590842.1	EMBL	CDS	1233128	1234150	.	-	0	ID=cds1061;Parent=gene1087;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL19752.1;Name=CAL19752.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL19752.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1233272	1233805	.	-	.	ID=id2462;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	sequence_feature	1234034	1234099	.	-	.	ID=id2463;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	1234043	1234126	.	-	.	ID=id2464;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	INVERTED	1234209	1234236	.	-	.	ID=id2465;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1234239	1234340	.	-	.	ID=gene1088;Name=intA;end_range=1234340,.;gbkey=Gene;gene=intA;gene_biotype=protein_coding;locus_tag=YPO1086a;partial=true;start_range=.,1234239
AL590842.1	EMBL	CDS	1234239	1234340	.	-	0	ID=cds1062;Parent=gene1088;Dbxref=UniProtKB/TrEMBL:Q0WHV8,NCBI_GP:CAL19753.1;Name=CAL19753.1;Note=Probable gene remnant. Similar to N-terminal regions of Escherichia coli prophage Cp4-57 integrase IntA SW:INTA_ECOLI (P32053) (413 aa) fasta scores: E(): 2.8e-05%2C61.765%25 id in 34 aa%2C and Haemophilus influenzae Cp4-57 integrase-like protein TR:Q9L8P3 (EMBL:AF198256) (408 aa) fasta scores: E(): 0.00043%2C 52.941%25 id in 34 aa. CDS is truncated by the insertion of the downstream IS100 element and subsequent recombination events%3B~was marked partial;end_range=1234340,.;gbkey=CDS;gene=intA;inference=similar to sequence:INSDC:AF198256;partial=true;product=phage integrase (partial);protein_id=CAL19753.1;start_range=.,1234239;transl_table=11
AL590842.1	EMBL	gene	1234752	1235063	.	+	.	ID=gene1089;Name=YPO1087;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1087
AL590842.1	EMBL	CDS	1234752	1235063	.	+	0	ID=cds1063;Parent=gene1089;Dbxref=InterPro:IPR009241,InterPro:IPR014056,UniProtKB/TrEMBL:Q0WHV7,NCBI_GP:CAL19754.1;Name=CAL19754.1;Note=Similar to plasmid proteins. Similar to Xylella fastidiosa hypothetical protein XFA0045 TR:Q9PHG3 (EMBL:AE003851) (106 aa) fasta scores: E(): 3e-14%2C 54.2%25 id in 72 aa%2C and to Pseudomonas alcaligenes hypothetical 11.2 kDa protein TR:Q9XAX7 (EMBL:U88088) (99 aa) fasta scores: E(): 4e-06%2C 50.0%25 id in 54 aa;gbkey=CDS;inference=similar to sequence:INSDC:U88088;product=putative prophage protein;protein_id=CAL19754.1;transl_table=11
AL590842.1	EMBL	gene	1235071	1235391	.	+	.	ID=gene1090;Name=YPO1088;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1088
AL590842.1	EMBL	CDS	1235071	1235391	.	+	0	ID=cds1064;Parent=gene1090;Dbxref=GOA:Q7CH33,InterPro:IPR010982,InterPro:IPR014057,UniProtKB/TrEMBL:Q7CH33,NCBI_GP:CAL19755.1;Name=CAL19755.1;Note=Similar to Xylella fastidiosa hypothetical protein XFA0046 TR:Q9PHG2 (EMBL:AE003851) (108 aa) fasta scores: E(): 4.3e-10%2C 40.0%25 id in 95 aa%2C and to Pseudomonas alcaligenes hypothetical 10.3 kDa protein TR:Q9XAX6 (EMBL:U88088) (96 aa) fasta scores: E(): 2e-05%2C 36.6%25 id in 82 aa;gbkey=CDS;inference=similar to sequence:INSDC:U88088;product=putative DNA-binding prophage protein;protein_id=CAL19755.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1235236	1235301	.	+	.	ID=id2466;Note=Predicted helix-turn-helix motif with score 1826 (+5.41 SD) at aa 56-77%2C sequence GGMASVAKKAGVSRETLYRTLS;gbkey=misc_feature
AL590842.1	EMBL	gene	1235740	1236828	.	-	.	ID=gene1091;Name=YPO1089;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1089
AL590842.1	EMBL	CDS	1235740	1236828	.	-	0	ID=cds1065;Parent=gene1091;Dbxref=InterPro:IPR027417,UniProtKB/TrEMBL:Q74W34,NCBI_GP:CAL19756.1;Name=CAL19756.1;Note=Weakly similar to many from plasmids and bacteriophage. Similar to unidentified replication protein A repA TR:Q03086 (EMBL:M73777) (290 aa) fasta scores: E(): 6.1e-07%2C 30.7%25 id in 238 aa%2C and to uncultured eubacterium plasmid putative DNA helicase repA TR:Q9L3P0 (EMBL:AJ271879) (279 aa) fasta scores: E(): 0.00012%2C 25.7%25 id in 237 aa%2C and to Escherichia coli regulatory protein RepA repA SW:REPJ_ECOLI (P20356) (279 aa) fasta scores: E(): 0.00022%2C 27.6%25 id in 192 aa%2C and to uncultured eubacterium plasmid pIE1115 putative DNA helicase repA TR:CAC05682 (EMBL:AJ293027) (279 aa) fasta scores: E(): 0.00036%2C 26.7%25 id in 191 aa%2C and to lactococcal bacteriophage bIL170 complete genome e5 TR:O80155 (EMBL:AF009630) (316 aa) fasta scores: E(): 0.51%2C 22.2%25 id in 203 aa;gbkey=CDS;inference=similar to sequence:INSDC:M73777;product=putative regulatory prophage protein;protein_id=CAL19756.1;transl_table=11
AL590842.1	EMBL	gene	1236825	1237784	.	-	.	ID=gene1092;Name=YPO1090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1090
AL590842.1	EMBL	CDS	1236825	1237784	.	-	0	ID=cds1066;Parent=gene1092;Dbxref=GOA:Q0WHV4,InterPro:IPR002694,InterPro:IPR006171,InterPro:IPR013237,UniProtKB/TrEMBL:Q0WHV4,NCBI_GP:CAL19757.1;Name=CAL19757.1;Note=Similar to the N-terminal regions of bacteriophage P4 putative P4-specific DNA primase alpha SW:PRIM_BPP4 (P10277) (777 aa) fasta scores: E(): 0%2C 35.8%25 id in 324 aa%2Cand Escherichia coli DNA primase TraC SW:TRC5_ECOLI (P27190) (1448 aa) fasta scores: E(): 1.5e-10%2C 27.8%25 id in 270 aa. Possible truncated protein.;gbkey=CDS;product=putative prophage DNA primase;protein_id=CAL19757.1;transl_table=11
AL590842.1	EMBL	gene	1237777	1238319	.	-	.	ID=gene1093;Name=YPO1091;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1091
AL590842.1	EMBL	CDS	1237777	1238319	.	-	0	ID=cds1067;Parent=gene1093;Dbxref=InterPro:IPR018880,UniProtKB/TrEMBL:Q7CH34,NCBI_GP:CAL19758.1;Name=CAL19758.1;Note=Similar to Shigella flexneri insertion sequence IS2 DNA TR:Q54157 (EMBL:Z23101) (179 aa) fasta scores: E(): 0.0091%2C 28.8%25 id in 132 aa%2C and to Bacteriophage P4 ASH protein cI SW:VASH_BPP4 (P05462) (137 aa) fasta scores: E(): 0.25%2C 37.5%25 id in 72 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z23101;product=putative prophage protein;protein_id=CAL19758.1;transl_table=11
AL590842.1	EMBL	gene	1238512	1239408	.	-	.	ID=gene1094;Name=YPO1092;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1092
AL590842.1	EMBL	CDS	1238512	1239408	.	-	0	ID=cds1068;Parent=gene1094;Dbxref=GOA:Q7CH35,InterPro:IPR011010,InterPro:IPR013762,InterPro:IPR023109,InterPro:IPR024456,InterPro:IPR024457,UniProtKB/TrEMBL:Q7CH35,NCBI_GP:CAL19759.1;Name=CAL19759.1;Note=Similar to Pseudomonas aeruginosa integrase/recombinase XerD TR:AAG07125 (EMBL:AE004793) (298 aa) fasta scores: E(): 0.027%2C 28.0%25 id in 239 aa%2C and to Chlamydia pneumoniae integrase/recombinase XerC or CP0752 TR:Q9Z9F7 (EMBL:AE001587) (312 aa) fasta scores: E(): 0.16%2C23.3%25 id in 232 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004793;product=putative DNA-binding prophage protein;protein_id=CAL19759.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1239319	1239384	.	-	.	ID=id2467;Note=Predicted helix-turn-helix motif with score 1045 (+2.75 SD) at aa 9-30%2C sequence REMKMLAKQAGGSHKTVHDRIR;gbkey=misc_feature
AL590842.1	EMBL	gene	1239421	1239711	.	-	.	ID=gene1095;Name=YPO1092a;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1092a
AL590842.1	EMBL	CDS	1239421	1239711	.	-	0	ID=cds1069;Parent=gene1095;Dbxref=UniProtKB/TrEMBL:Q7CH36,NCBI_GP:CAL19760.1;Name=CAL19760.1;Note=No significant database matches;gbkey=CDS;product=hypothetical protein;protein_id=CAL19760.1;transl_table=11
AL590842.1	EMBL	gene	1239803	1239976	.	-	.	ID=gene1096;Name=YPO1094;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1094
AL590842.1	EMBL	CDS	1239803	1239976	.	-	0	ID=cds1070;Parent=gene1096;Dbxref=UniProtKB/TrEMBL:Q74W40,NCBI_GP:CAL19761.1;Name=CAL19761.1;Note=No significant database matches;gbkey=CDS;product=hypothetical protein;protein_id=CAL19761.1;transl_table=11
AL590842.1	EMBL	gene	1240207	1240434	.	+	.	ID=gene1097;Name=YPO1095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1095
AL590842.1	EMBL	CDS	1240207	1240434	.	+	0	ID=cds1071;Parent=gene1097;Dbxref=UniProtKB/TrEMBL:Q74W41,NCBI_GP:CAL19762.1;Name=CAL19762.1;Note=No significant database matches;gbkey=CDS;product=hypothetical protein;protein_id=CAL19762.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1240566	1243482	.	+	.	ID=id2468;Note=Low GC region;gbkey=misc_feature
AL590842.1	EMBL	gene	1240596	1242266	.	-	.	ID=gene1098;Name=YPO1096;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1096
AL590842.1	EMBL	CDS	1240596	1242266	.	-	0	ID=cds1072;Parent=gene1098;Dbxref=UniProtKB/TrEMBL:Q74W42,NCBI_GP:CAL19763.1;Name=CAL19763.1;Note=No significant database matches;gbkey=CDS;product=putative phage protein;protein_id=CAL19763.1;transl_table=11
AL590842.1	EMBL	gene	1242317	1243405	.	-	.	ID=gene1099;Name=YPO1097;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1097
AL590842.1	EMBL	CDS	1242317	1243405	.	-	0	ID=cds1073;Parent=gene1099;Dbxref=InterPro:IPR025382,UniProtKB/TrEMBL:Q7CH37,NCBI_GP:CAL19764.1;Name=CAL19764.1;Note=No significant database matches;gbkey=CDS;product=putative phage protein;protein_id=CAL19764.1;transl_table=11
AL590842.1	EMBL	gene	1243484	1244683	.	-	.	ID=gene1100;Name=YPO1098;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1098
AL590842.1	EMBL	CDS	1243484	1244683	.	-	0	ID=cds1074;Parent=gene1100;Dbxref=GOA:Q0WHU6,InterPro:IPR002104,InterPro:IPR011010,InterPro:IPR013762,InterPro:IPR023109,InterPro:IPR025166,UniProtKB/TrEMBL:Q0WHU6,NCBI_GP:CAL19765.1;Name=CAL19765.1;Note=Similar to Escherichia coli prophage CP4-57 integrase SW:INTA_ECOLI (P32053) (413 aa) fasta scores: E(): 0%2C 57.8%25 id in 389 aa%2C and to Vibrio cholerae phage integrase VC0516 TR:Q9KUK2 (EMBL:AE004138) (413 aa) fasta scores: E(): 0%2C 52.7%25 id in 393 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004138;product=putative prophage integrase;protein_id=CAL19765.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1243535	1244062	.	-	.	ID=id2469;Note=Pfam match to entry PF00589 Phage_integrase%2C Phage integrase family%2C score 116.60%2C E-value 4.7e-31;gbkey=misc_feature;inference=protein motif:PF00589
AL590842.1	EMBL	repeat_region	1244799	1245510	.	-	.	ID=id2470;Note=Contains an 'A' at nucleotide position 315.%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	1244907	1245365	.	-	.	ID=gene1101;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO1099
AL590842.1	EMBL	CDS	1244907	1245365	.	-	0	ID=cds1075;Parent=gene1101;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL19766.1;Name=CAL19766.1;Note=Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL19766.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1245000	1245311	.	-	.	ID=id2471;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	1245588	1245951	.	+	.	ID=gene1102;Name=ssrA;gbkey=Gene;gene=ssrA;gene_biotype=misc_RNA
AL590842.1	EMBL	transcript	1245588	1245951	.	+	.	ID=rna26;Parent=gene1102;Note=Similar to Escherichia coli small stable RNA molecule%2C tmRNA [10Sa RNA] (D12501)%2C 91%25 identity in 333 nt overlap;gbkey=misc_RNA;gene=ssrA
AL590842.1	EMBL	exon	1245588	1245951	.	+	.	ID=id2472;Parent=rna26;Note=Similar to Escherichia coli small stable RNA molecule%2C tmRNA [10Sa RNA] (D12501)%2C 91%25 identity in 333 nt overlap;gbkey=misc_RNA;gene=ssrA
AL590842.1	EMBL	gene	1246000	1246482	.	-	.	ID=gene1103;Name=b2620;gbkey=Gene;gene=b2620;gene_biotype=protein_coding;gene_synonym=smpB,smqB;locus_tag=YPO1101
AL590842.1	EMBL	CDS	1246000	1246482	.	-	0	ID=cds1076;Parent=gene1103;Dbxref=GOA:Q8ZH14,InterPro:IPR000037,InterPro:IPR020081,InterPro:IPR023620,NCBI_GP:CAL19767.1;Name=CAL19767.1;Note=Similar to Escherichia coli SsrA-binding protein SmpB SW:SMPB_ECOLI (P32052) (159 aa) fasta scores: E(): 0%2C84.9%25 id in 159 aa%2C and to Vibrio cholerae SsrA-binding protein small protein B TR:Q9KTQ3 (EMBL:AE004170) (161 aa) fasta scores: E(): 0%2C 67.7%25 id in 161 aa;gbkey=CDS;gene=b2620;inference=similar to sequence:INSDC:AE004170;product=SsrA-binding protein (small protein B);protein_id=CAL19767.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1246243	1246449	.	-	.	ID=id2473;Note=Pfam match to entry PF01668 SmpB%2C SmpB protein%2Cscore 161.50%2C E-value 1.4e-44;gbkey=misc_feature;gene=b2620;inference=protein motif:PF01668
AL590842.1	EMBL	sequence_feature	1246351	1246389	.	-	.	ID=id2474;Note=PS01317 Protein smpB signature.;gbkey=misc_feature;gene=b2620;inference=protein motif:ProSite:PS01317
AL590842.1	EMBL	gene	1246643	1247077	.	+	.	ID=gene1104;Name=YPO1102;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1102
AL590842.1	EMBL	CDS	1246643	1247077	.	+	0	ID=cds1077;Parent=gene1104;Dbxref=InterPro:IPR005031,InterPro:IPR023393,UniProtKB/TrEMBL:Q0WHU3,NCBI_GP:CAL19768.1;Name=CAL19768.1;Note=Similar to Escherichia coli hypothetical protein YfjG SW:YFJG_ECOLI (P52121) (158 aa) fasta scores: E(): 0%2C79.3%25 id in 145 aa%2C and to Vibrio cholerae hypothetical protein VC0849 SW:Y849_VIBCH (P52122) (144 aa) fasta scores: E(): 0%2C 69.0%25 id in 142 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19768.1;transl_table=11
AL590842.1	EMBL	gene	1247070	1247354	.	+	.	ID=gene1105;Name=YPO1103;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1103
AL590842.1	EMBL	CDS	1247070	1247354	.	+	0	ID=cds1078;Parent=gene1105;Dbxref=InterPro:IPR005346,InterPro:IPR016155,NCBI_GP:CAL19769.1;Name=CAL19769.1;Note=Similar to Escherichia coli hypothetical protein YfjF SW:YFJF_ECOLI (P52119) (96 aa) fasta scores: E(): 5.8e-24%2C 76.4%25 id in 89 aa%2C and to Vibrio cholerae hypothetical protein YfjF SW:YFJF_VIBCH (P52120) (101 aa) fasta scores: E(): 2.4e-17%2C 60.9%25 id in 92 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19769.1;transl_table=11
AL590842.1	EMBL	gene	1247504	1247854	.	-	.	ID=gene1106;Name=YPO1104;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1104
AL590842.1	EMBL	CDS	1247504	1247854	.	-	0	ID=cds1079;Parent=gene1106;Dbxref=GOA:Q7CH39,InterPro:IPR007450,InterPro:IPR026592,NCBI_GP:CAL19770.1;Name=CAL19770.1;Note=Similar to Escherichia coli small protein A precursor SmpA SW:SMPA_ECOLI (P23089) (113 aa) fasta scores: E(): 0%2C 78.8%25 id in 113 aa%2C and to Vibrio cholerae small protein A homolog precursor SmpA TR:Q9KTQ0 (EMBL:AE004170) (136 aa) fasta scores: E(): 3.1e-12%2C 36.8%25 id in 114 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004170;product=conserved hypothetical protein;protein_id=CAL19770.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1247786	1247818	.	-	.	ID=id2475;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	1247959	1249638	.	-	.	ID=gene1107;Name=YPO1105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1105
AL590842.1	EMBL	CDS	1247959	1249638	.	-	0	ID=cds1080;Parent=gene1107;Dbxref=GOA:Q0WHU0,InterPro:IPR003395,InterPro:IPR004604,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WHU0,NCBI_GP:CAL19771.1;Name=CAL19771.1;Note=Similar to Escherichia coli DNA repair protein RecN SW:RECN_ECOLI (P05824) (553 aa) fasta scores: E(): 0%2C 74.3%25 id in 553 aa%2C and to Vibrio cholerae DNA repair protein RecN SW:RECN_VIBCH (P52118) (554 aa) fasta scores: E(): 0%2C53.7%25 id in 553 aa;gbkey=CDS;product=DNA repair protein RecN;protein_id=CAL19771.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1249513	1249536	.	-	.	ID=id2476;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1249707	1250588	.	-	.	ID=gene1108;Name=YPO1106;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1106
AL590842.1	EMBL	CDS	1249707	1250588	.	-	0	ID=cds1081;Parent=gene1108;Dbxref=GOA:Q8ZH09,InterPro:IPR002504,InterPro:IPR016064,InterPro:IPR017437,InterPro:IPR017438,PDB:4HAO,NCBI_GP:CAL19772.1;Name=CAL19772.1;Note=Similar to Escherichia coli hypothetical protein YfjB SW:YFJB_ECOLI (P37768) (292 aa) fasta scores: E(): 0%2C82.9%25 id in 293 aa%2C and to Vibrio cholerae hypothetical protein VC0853 TR:Q9KTP8 (EMBL:AE004170) (294 aa) fasta scores: E(): 0%2C 59.3%25 id in 290 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004170;product=conserved hypothetical protein;protein_id=CAL19772.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1249746	1250522	.	-	.	ID=id2477;Note=Pfam match to entry PF01513 DUF15%2C Domain of unknown function DUF15%2C score 397.30%2C E-value 1.5e-115;gbkey=misc_feature;inference=protein motif:PF01513
AL590842.1	EMBL	gene	1250712	1251290	.	+	.	ID=gene1109;Name=YPO1107;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1107
AL590842.1	EMBL	CDS	1250712	1251290	.	+	0	ID=cds1082;Parent=gene1109;Dbxref=GOA:Q7CH40,InterPro:IPR000740,InterPro:IPR009012,InterPro:IPR013805,NCBI_GP:CAL19773.1;Name=CAL19773.1;Note=Similar to Escherichia coli GrpE protein SW:GRPE_ECOLI (P09372) (197 aa) fasta scores: E(): 0%2C 59.2%25 id in 179 aa%2C and to Vibrio cholerae GrpE protein TR:Q9KTP7 (EMBL:AE004170) (200 aa) fasta scores: E(): 2.1e-28%2C 53.9%25 id in 167 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004170;product=heat shock protein GrpE;protein_id=CAL19773.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1250778	1251278	.	+	.	ID=id2478;Note=Pfam match to entry PF01025 GrpE%2C GrpE%2C score 240.00%2C E-value 3.2e-68;gbkey=misc_feature;inference=protein motif:PF01025
AL590842.1	EMBL	sequence_feature	1251141	1251272	.	+	.	ID=id2479;Note=PS01071 grpE protein signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01071
AL590842.1	EMBL	gene	1251398	1252678	.	-	.	ID=gene1110;Name=gltA;gbkey=Gene;gene=gltA;gene_biotype=protein_coding;gene_synonym=gluT,icdB;locus_tag=YPO1108
AL590842.1	EMBL	CDS	1251398	1252678	.	-	0	ID=cds1083;Parent=gene1110;Dbxref=GOA:Q7CH41,InterPro:IPR002020,InterPro:IPR010953,InterPro:IPR016141,InterPro:IPR016142,InterPro:IPR016143,InterPro:IPR019810,InterPro:IPR024176,UniProtKB/TrEMBL:Q7CH41,NCBI_GP:CAL19774.1;Name=CAL19774.1;Note=Similar to Escherichia coli citrate synthase GltA SW:CISY_ECOLI (P00891) (427 aa) fasta scores: E(): 0%2C 86.7%25 id in 427 aa%2C and to Vibrio cholerae citrate synthase VC2092 TR:Q9KQA8 (EMBL:AE004283) (431 aa) fasta scores: E(): 0%2C 78.0%25 id in 422 aa;gbkey=CDS;gene=gltA;inference=similar to sequence:INSDC:AE004283;product=citrate synthase GltA;protein_id=CAL19774.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1251455	1252546	.	-	.	ID=id2480;Note=Pfam match to entry PF00285 citrate_synt%2C Citrate synthase%2C score 783.50%2C E-value 4.5e-246;gbkey=misc_feature;gene=gltA;inference=protein motif:PF00285
AL590842.1	EMBL	sequence_feature	1251737	1251775	.	-	.	ID=id2481;Note=PS00480 Citrate synthase signature.;gbkey=misc_feature;gene=gltA;inference=protein motif:ProSite:PS00480
AL590842.1	EMBL	gene	1253388	1253777	.	+	.	ID=gene1111;Name=cybA;gbkey=Gene;gene=cybA;gene_biotype=protein_coding;gene_synonym=sdhC;locus_tag=YPO1109
AL590842.1	EMBL	CDS	1253388	1253777	.	+	0	ID=cds1084;Parent=gene1111;Dbxref=GOA:Q7CH42,InterPro:IPR000701,InterPro:IPR014314,InterPro:IPR014361,InterPro:IPR018495,UniProtKB/TrEMBL:Q7CH42,NCBI_GP:CAL19775.1;Name=CAL19775.1;Note=Similar to Escherichia coli succinate dehydrogenase cytochrome b556 subunit SdhC SW:DHSC_ECOLI (P10446) (129 aa) fasta scores: E(): 0%2C 77.2%25 id in 127 aa%2C and to Vibrio cholerae succinate dehydrogenase%2C cytochrome b556 subunit VC2091 TR:Q9KQA9 (EMBL:AE004283) (130 aa) fasta scores: E(): 0%2C 75.0%25 id in 124 aa;gbkey=CDS;gene=cybA;inference=similar to sequence:INSDC:AE004283;product=succinate dehydrogenase cytochrome b-556 subunit;protein_id=CAL19775.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1253403	1253756	.	+	.	ID=id2482;Note=Pfam match to entry PF01127 Sdh_cyt%2C Succinate dehydrogenase cytochrome b subunit%2C score 165.60%2C E-value 8.3e-46;gbkey=misc_feature;gene=cybA;inference=protein motif:PF01127
AL590842.1	EMBL	sequence_feature	1253412	1253486	.	+	.	ID=id2483;Note=PS01000 Succinate dehydrogenase cytochrome b subunit signature 1.;gbkey=misc_feature;gene=cybA;inference=protein motif:ProSite:PS01000
AL590842.1	EMBL	sequence_feature	1253472	1253540	.	+	.	ID=id2484;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=cybA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1253601	1253669	.	+	.	ID=id2485;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=cybA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1253637	1253678	.	+	.	ID=id2486;Note=PS01001 Succinate dehydrogenase cytochrome b subunit signature 2.;gbkey=misc_feature;gene=cybA;inference=protein motif:ProSite:PS01001
AL590842.1	EMBL	sequence_feature	1253712	1253771	.	+	.	ID=id2487;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=cybA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1253771	1254118	.	+	.	ID=gene1112;Name=sdhD;gbkey=Gene;gene=sdhD;gene_biotype=protein_coding;locus_tag=YPO1110
AL590842.1	EMBL	CDS	1253771	1254118	.	+	0	ID=cds1085;Parent=gene1112;Dbxref=GOA:Q7CH43,InterPro:IPR000701,InterPro:IPR014312,UniProtKB/TrEMBL:Q7CH43,NCBI_GP:CAL19776.1;Name=CAL19776.1;Note=Similar to Escherichia coli succinate dehydrogenase hydrophobic membrane anchor protein SdhD SW:DHSD_ECOLI (P10445) (115 aa) fasta scores: E(): 1.9e-32%2C 69.3%25 id in 114 aa%2C and to Vibrio cholerae succinate dehydrogenase%2Chydrophobic membrane anchor protein VC2090 TR:Q9KQB0 (EMBL:AE004283) (114 aa) fasta scores: E(): 1.1e-23%2C 57.4%25 id in 115 aa;gbkey=CDS;gene=sdhD;inference=similar to sequence:INSDC:AE004283;product=succinate dehydrogenase hydrophobic membrane anchor protein;protein_id=CAL19776.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1253819	1253887	.	+	.	ID=id2488;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=sdhD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1253945	1254013	.	+	.	ID=id2489;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=sdhD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1254041	1254109	.	+	.	ID=id2490;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=sdhD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1254119	1255885	.	+	.	ID=gene1113;Name=sdhA;gbkey=Gene;gene=sdhA;gene_biotype=protein_coding;locus_tag=YPO1111
AL590842.1	EMBL	CDS	1254119	1255885	.	+	0	ID=cds1086;Parent=gene1113;Dbxref=GOA:Q7CH44,InterPro:IPR003952,InterPro:IPR003953,InterPro:IPR011281,InterPro:IPR013027,InterPro:IPR014006,InterPro:IPR015939,InterPro:IPR027477,UniProtKB/TrEMBL:Q7CH44,NCBI_GP:CAL19777.1;Name=CAL19777.1;Note=Similar to Escherichia coli succinate dehydrogenase flavoprotein subunit SdhA SW:DHSA_ECOLI (P10444) (588 aa) fasta scores: E(): 0%2C 92.0%25 id in 588 aa%2C and to Vibrio cholerae succinate dehydrogenase%2C flavoprotein subunit VC2089 TR:Q9KQB1 (EMBL:AE004283) (588 aa) fasta scores: E(): 0%2C 82.3%25 id in 588 aa;gbkey=CDS;gene=sdhA;inference=similar to sequence:INSDC:AE004283;product=succinate dehydrogenase flavoprotein subunit;protein_id=CAL19777.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1254245	1254274	.	+	.	ID=id2491;Note=PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site.;gbkey=misc_feature;gene=sdhA;inference=protein motif:ProSite:PS00504
AL590842.1	EMBL	sequence_feature	1254440	1255438	.	+	.	ID=id2492;Note=Pfam match to entry PF00890 FAD_binding_2%2C FAD binding domain%2C score 733.90%2C E-value 7.1e-217;gbkey=misc_feature;gene=sdhA;inference=protein motif:PF00890
AL590842.1	EMBL	gene	1255935	1256651	.	+	.	ID=gene1114;Name=sdhB;gbkey=Gene;gene=sdhB;gene_biotype=protein_coding;locus_tag=YPO1112
AL590842.1	EMBL	CDS	1255935	1256651	.	+	0	ID=cds1087;Parent=gene1114;Dbxref=GOA:Q7CH45,InterPro:IPR001041,InterPro:IPR004489,InterPro:IPR009051,InterPro:IPR012675,InterPro:IPR017896,InterPro:IPR017900,InterPro:IPR025192,UniProtKB/TrEMBL:Q7CH45,NCBI_GP:CAL19778.1;Name=CAL19778.1;Note=Similar to Escherichia coli succinate dehydrogenase iron-sulfur protein SdhB SW:DHSB_ECOLI (P07014) (238 aa) fasta scores: E(): 0%2C 90.8%25 id in 238 aa%2C and to Vibrio cholerae succinate dehydrogenase%2C iron-sulfur protein VC2088 TR:Q9KQB2 (EMBL:AE004283) (236 aa) fasta scores: E(): 0%2C 80.2%25 id in 237 aa;gbkey=CDS;gene=sdhB;inference=similar to sequence:INSDC:AE004283;product=succinate dehydrogenase iron-sulfur protein;protein_id=CAL19778.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1255980	1256177	.	+	.	ID=id2493;Note=Pfam match to entry PF00111 fer2%2C 2Fe-2S iron-sulfur cluster binding domains%2C score 8.70%2C E-value 0.96;gbkey=misc_feature;gene=sdhB;inference=protein motif:PF00111
AL590842.1	EMBL	sequence_feature	1256379	1256414	.	+	.	ID=id2494;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;gene=sdhB;inference=protein motif:ProSite:PS00198
AL590842.1	EMBL	gene	1257007	1259814	.	+	.	ID=gene1115;Name=sucA;gbkey=Gene;gene=sucA;gene_biotype=protein_coding;locus_tag=YPO1113
AL590842.1	EMBL	CDS	1257007	1259814	.	+	0	ID=cds1088;Parent=gene1115;Dbxref=GOA:Q7CH46,InterPro:IPR001017,InterPro:IPR005475,InterPro:IPR011603,InterPro:IPR029061,UniProtKB/TrEMBL:Q7CH46,NCBI_GP:CAL19779.1;Name=CAL19779.1;Note=Similar to Escherichia coli 2-oxoglutarate dehydrogenase E1 component SucA SW:ODO1_ECOLI (P07015) (933 aa) fasta scores: E(): 0%2C 87.8%25 id in 935 aa%2C and to Vibrio cholerae 2-oxoglutarate dehydrogenase%2C E1 component VC2087 TR:Q9KQB3 (EMBL:AE004282) (936 aa) fasta scores: E(): 0%2C73.8%25 id in 936 aa;gbkey=CDS;gene=sucA;inference=similar to sequence:INSDC:AE004282;product=2-oxoglutarate dehydrogenase E1 component;protein_id=CAL19779.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1257625	1258599	.	+	.	ID=id2495;Note=Pfam match to entry PF00676 E1_dehydrog%2CDehydrogenase E1 component%2C score 115.00%2C E-value 1.5e-30;gbkey=misc_feature;gene=sucA;inference=protein motif:PF00676
AL590842.1	EMBL	gene	1259844	1261067	.	+	.	ID=gene1116;Name=sucB;gbkey=Gene;gene=sucB;gene_biotype=protein_coding;locus_tag=YPO1114
AL590842.1	EMBL	CDS	1259844	1261067	.	+	0	ID=cds1089;Parent=gene1116;Dbxref=GOA:Q7CH47,InterPro:IPR000089,InterPro:IPR001078,InterPro:IPR003016,InterPro:IPR004167,InterPro:IPR006255,InterPro:IPR011053,InterPro:IPR023213,UniProtKB/TrEMBL:Q7CH47,NCBI_GP:CAL19780.1;Name=CAL19780.1;Note=Similar to Escherichia coli dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex SucB SW:ODO2_ECOLI (P07016) (404 aa) fasta scores: E(): 0%2C 84.2%25 id in 406 aa%2C and to Vibrio cholerae 2-oxoglutarate dehydrogenase%2C E2 component%2Cdihydrolipoamide succinyltransferase VC2086 TR:Q9KQB4 (EMBL:AE004282) (404 aa) fasta scores: E(): 0%2C 75.1%25 id in 405 aa;gbkey=CDS;gene=sucB;inference=similar to sequence:INSDC:AE004282;product=dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex;protein_id=CAL19780.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1259853	1260074	.	+	.	ID=id2496;Note=Pfam match to entry PF00364 biotin_lipoyl%2CBiotin-requiring enzymes%2C score 90.40%2C E-value 3.7e-23;gbkey=misc_feature;gene=sucB;inference=protein motif:PF00364
AL590842.1	EMBL	sequence_feature	1260402	1261061	.	+	.	ID=id2497;Note=Pfam match to entry PF00198 2-oxoacid_dh%2C 2-oxo acid dehydrogenases acyltransferase (catalytic domain)%2C score 364.60%2C E-value 1e-105;gbkey=misc_feature;gene=sucB;inference=protein motif:PF00198
AL590842.1	EMBL	gene	1261180	1262346	.	+	.	ID=gene1117;Name=b0728;gbkey=Gene;gene=b0728;gene_biotype=protein_coding;gene_synonym=sucC;locus_tag=YPO1115
AL590842.1	EMBL	CDS	1261180	1262346	.	+	0	ID=cds1090;Parent=gene1117;Dbxref=GOA:Q8ZH00,InterPro:IPR005809,InterPro:IPR005811,InterPro:IPR011761,InterPro:IPR013650,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016102,InterPro:IPR017866,NCBI_GP:CAL19781.1;Name=CAL19781.1;Note=Similar to Escherichia coli succinyl-CoA synthetase beta chain SW:SUCC_ECOLI (P07460) (388 aa) fasta scores: E(): 0%2C 92.8%25 id in 388 aa%2C and to Vibrio cholerae succinyl-CoA synthase%2C beta subunit VC2085 TR:Q9KQB5 (EMBL:AE004282) (388 aa) fasta scores: E(): 0%2C 77.1%25 id in 388 aa;gbkey=CDS;gene=b0728;inference=similar to sequence:INSDC:AE004282;product=succinyl-CoA synthetase beta chain;protein_id=CAL19781.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1261264	1261773	.	+	.	ID=id2498;Note=Pfam match to entry PF02222 ATP-grasp%2C ATP-grasp domain%2C score 213.20%2C E-value 4e-60;gbkey=misc_feature;gene=b0728;inference=protein motif:PF02222
AL590842.1	EMBL	sequence_feature	1261915	1262343	.	+	.	ID=id2499;Note=Pfam match to entry PF00549 ligase-CoA%2C CoA-ligases%2Cscore 280.20%2C E-value 2.6e-80;gbkey=misc_feature;gene=b0728;inference=protein motif:PF00549
AL590842.1	EMBL	sequence_feature	1261948	1262022	.	+	.	ID=id2500;Note=PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3.;gbkey=misc_feature;gene=b0728;inference=protein motif:ProSite:PS01217
AL590842.1	EMBL	gene	1262346	1263218	.	+	.	ID=gene1118;Name=sucD;gbkey=Gene;gene=sucD;gene_biotype=protein_coding;locus_tag=YPO1116
AL590842.1	EMBL	CDS	1262346	1263218	.	+	0	ID=cds1091;Parent=gene1118;Dbxref=GOA:Q7CH48,InterPro:IPR003781,InterPro:IPR005810,InterPro:IPR005811,InterPro:IPR016040,InterPro:IPR016102,InterPro:IPR017440,UniProtKB/TrEMBL:Q7CH48,NCBI_GP:CAL19782.1;Name=CAL19782.1;Note=Similar to Escherichia coli succinyl-CoA synthetase alpha chain SW:SUCD_ECOLI (P07459) (288 aa) fasta scores: E(): 0%2C 90.9%25 id in 287 aa%2C and to Vibrio cholerae succinyl-CoA synthase%2C alpha subunit VC2084 TR:Q9KQB6 (EMBL:AE004282) (290 aa) fasta scores: E(): 0%2C 85.4%25 id in 287 aa;gbkey=CDS;gene=sucD;inference=similar to sequence:INSDC:AE004282;product=succinyl-CoA synthetase alpha chain;protein_id=CAL19782.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1262742	1263185	.	+	.	ID=id2501;Note=Pfam match to entry PF00549 ligase-CoA%2C CoA-ligases%2Cscore 225.20%2C E-value 9.4e-64;gbkey=misc_feature;gene=sucD;inference=protein motif:PF00549
AL590842.1	EMBL	sequence_feature	1262799	1262888	.	+	.	ID=id2502;Note=PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1.;gbkey=misc_feature;gene=sucD;inference=protein motif:ProSite:PS01216
AL590842.1	EMBL	sequence_feature	1263051	1263092	.	+	.	ID=id2503;Note=PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site.;gbkey=misc_feature;gene=sucD;inference=protein motif:ProSite:PS00399
AL590842.1	EMBL	gene	1263985	1265553	.	+	.	ID=gene1119;Name=cydA;gbkey=Gene;gene=cydA;gene_biotype=protein_coding;locus_tag=YPO1117
AL590842.1	EMBL	CDS	1263985	1265553	.	+	0	ID=cds1092;Parent=gene1119;Dbxref=GOA:Q7CH49,InterPro:IPR002585,UniProtKB/TrEMBL:Q7CH49,NCBI_GP:CAL19783.1;Name=CAL19783.1;Note=Similar to Escherichia coli cytochrome D ubiquinol oxidase subunit I SW:CYDA_ECOLI (P11026) (522 aa) fasta scores: E(): 0%2C 86.6%25 id in 522 aa;gbkey=CDS;gene=cydA;inference=protein motif:TMHMM:2.0;product=cytochrome D ubiquinol oxidase subunit I;protein_id=CAL19783.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1264003	1265517	.	+	.	ID=id2504;Note=Pfam match to entry PF01654 Bac_Ubq_Cox%2C Bacterial Cytochrome Ubiquinol Oxidase%2C score 1092.40%2C E-value 0;gbkey=misc_feature;gene=cydA;inference=protein motif:PF01654
AL590842.1	EMBL	sequence_feature	1264042	1264110	.	+	.	ID=id2505;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1264144	1264212	.	+	.	ID=id2506;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1264270	1264338	.	+	.	ID=id2507;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1264357	1264425	.	+	.	ID=id2508;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1264537	1264605	.	+	.	ID=id2509;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1264639	1264698	.	+	.	ID=id2510;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1265143	1265211	.	+	.	ID=id2511;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1265245	1265313	.	+	.	ID=id2512;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1265380	1265448	.	+	.	ID=id2513;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1265568	1266707	.	+	.	ID=gene1120;Name=cydB;gbkey=Gene;gene=cydB;gene_biotype=protein_coding;locus_tag=YPO1118
AL590842.1	EMBL	CDS	1265568	1266707	.	+	0	ID=cds1093;Parent=gene1120;Dbxref=GOA:Q7CH50,InterPro:IPR003317,UniProtKB/TrEMBL:Q7CH50,NCBI_GP:CAL19784.1;Name=CAL19784.1;Note=Similar to Escherichia coli cytochrome D ubiquinol oxidase subunit II SW:CYDB_ECOLI (P11027) (379 aa) fasta scores: E(): 0%2C 78.4%25 id in 379 aa;gbkey=CDS;gene=cydB;inference=protein motif:TMHMM:2.0;product=cytochrome D ubiquinol oxidase subunit II;protein_id=CAL19784.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1265580	1266668	.	+	.	ID=id2514;Note=Pfam match to entry PF02322 Cyto_ox_2%2C %2C score 714.90%2C E-value 3.7e-211;gbkey=misc_feature;gene=cydB;inference=protein motif:PF02322
AL590842.1	EMBL	sequence_feature	1265586	1265639	.	+	.	ID=id2515;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1265799	1265867	.	+	.	ID=id2516;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1265928	1265996	.	+	.	ID=id2517;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1266054	1266122	.	+	.	ID=id2518;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1266183	1266236	.	+	.	ID=id2519;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1266354	1266422	.	+	.	ID=id2520;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1266441	1266509	.	+	.	ID=id2521;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1266567	1266635	.	+	.	ID=id2522;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1266799	1267131	.	+	.	ID=gene1121;Name=YPO1119;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1119
AL590842.1	EMBL	CDS	1266799	1267131	.	+	0	ID=cds1094;Parent=gene1121;Dbxref=InterPro:IPR011846,UniProtKB/TrEMBL:Q7CH51,NCBI_GP:CAL19785.1;Name=CAL19785.1;Note=Similar to Escherichia coli protein YbgE SW:YBGE_ECOLI (P37343) (97 aa) fasta scores: E(): 6e-22%2C59.6%25 id in 89 aa%2C and to Vibrio cholerae hypothetical protein VC1841 TR:Q9KR06 (EMBL:AE004260) (105 aa) fasta scores: E(): 4.3e-08%2C 34.5%25 id in 84 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004260;product=conserved hypothetical protein;protein_id=CAL19785.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1266886	1266939	.	+	.	ID=id2523;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1266982	1267041	.	+	.	ID=id2524;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1267054	1267122	.	+	.	ID=id2525;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1267263	1267664	.	+	.	ID=gene1122;Name=YPO1120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1120
AL590842.1	EMBL	CDS	1267263	1267664	.	+	0	ID=cds1095;Parent=gene1122;Dbxref=GOA:Q7CH52,InterPro:IPR006683,InterPro:IPR006684,InterPro:IPR014166,InterPro:IPR029069,UniProtKB/TrEMBL:Q7CH52,NCBI_GP:CAL19786.1;Name=CAL19786.1;Note=Similar to Escherichia coli hypothetical protein YbgC SW:YBGC_ECOLI (P08999) (134 aa) fasta scores: E(): 0%2C72.2%25 id in 133 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19786.1;transl_table=11
AL590842.1	EMBL	gene	1267664	1268350	.	+	.	ID=gene1123;Name=tolQ;gbkey=Gene;gene=tolQ;gene_biotype=protein_coding;locus_tag=YPO1121
AL590842.1	EMBL	CDS	1267664	1268350	.	+	0	ID=cds1096;Parent=gene1123;Dbxref=GOA:Q7CH53,InterPro:IPR002898,InterPro:IPR014163,UniProtKB/TrEMBL:Q7CH53,NCBI_GP:CAL19787.1;Name=CAL19787.1;Note=Similar to Escherichia coli TolQ protein SW:TOLQ_ECOLI (P05828) (230 aa) fasta scores: E(): 0%2C 89.4%25 id in 227 aa;gbkey=CDS;gene=tolQ;inference=protein motif:TMHMM:2.0;product=TolQ colicin import protein;protein_id=CAL19787.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1267706	1267774	.	+	.	ID=id2526;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=tolQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1267880	1268296	.	+	.	ID=id2527;Note=Pfam match to entry PF01618 MotA_ExbB%2CMotA/TolQ/ExbB proton channel family%2C score 220.60%2C E-value 2.4e-62;gbkey=misc_feature;gene=tolQ;inference=protein motif:PF01618
AL590842.1	EMBL	sequence_feature	1268060	1268128	.	+	.	ID=id2528;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=tolQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1268171	1268239	.	+	.	ID=id2529;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=tolQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1268363	1268791	.	+	.	ID=gene1124;Name=tolR;gbkey=Gene;gene=tolR;gene_biotype=protein_coding;locus_tag=YPO1122
AL590842.1	EMBL	CDS	1268363	1268791	.	+	0	ID=cds1097;Parent=gene1124;Dbxref=GOA:Q7CH54,InterPro:IPR003400,InterPro:IPR014168,UniProtKB/TrEMBL:Q7CH54,NCBI_GP:CAL19788.1;Name=CAL19788.1;Note=Similar to Escherichia coli TolR protein protein SW:TOLR_ECOLI (P05829) (142 aa) fasta scores: E(): 0%2C 83.1%25 id in 142 aa%2C and to Vibrio cholerae TolR membrane protein vc1838 TR:Q9KR09 (EMBL:AE004259) (146 aa) fasta scores: E(): 5.5e-15%2C 39.4%25 id in 137 aa;gbkey=CDS;gene=tolR;inference=similar to sequence:INSDC:AE004259;product=TolR colicin import membrane protein;protein_id=CAL19788.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1268387	1268788	.	+	.	ID=id2530;Note=Pfam match to entry PF02472 ExbD%2C %2C score 67.50%2CE-value 2.8e-16;gbkey=misc_feature;gene=tolR;inference=protein motif:PF02472
AL590842.1	EMBL	sequence_feature	1268411	1268479	.	+	.	ID=id2531;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=tolR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1268903	1270069	.	+	.	ID=gene1125;Name=tolA;gbkey=Gene;gene=tolA;gene_biotype=protein_coding;locus_tag=YPO1123
AL590842.1	EMBL	CDS	1268903	1270069	.	+	0	ID=cds1098;Parent=gene1125;Dbxref=GOA:Q0WHS2,InterPro:IPR014161,UniProtKB/TrEMBL:Q0WHS2,NCBI_GP:CAL19789.1;Name=CAL19789.1;Note=Similar to Escherichia coli TolA protein SW:TOLA_ECOLI (P19934) (421 aa) fasta scores: E(): 5.1e-27%2C57.9%25 id in 423 aa%2C and to Pseudomonas aeruginosa TolA protein SW:TOLA_PSEAE (P50600) (347 aa) fasta scores: E(): 6.6e-09%2C 33.2%25 id in 319 aa;gbkey=CDS;gene=tolA;product=TolA colicin import membrane protein;protein_id=CAL19789.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1268939	1269007	.	+	.	ID=id2532;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=tolA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1270189	1271481	.	+	.	ID=gene1126;Name=tolB;gbkey=Gene;gene=tolB;gene_biotype=protein_coding;locus_tag=YPO1124
AL590842.1	EMBL	CDS	1270189	1271481	.	+	0	ID=cds1099;Parent=gene1126;Dbxref=GOA:Q8ZGZ1,InterPro:IPR007195,InterPro:IPR011659,InterPro:IPR014167,InterPro:IPR015943,PDB:4PWZ,PDB:4R40,NCBI_GP:CAL19790.1;Name=CAL19790.1;Note=Similar to Escherichia coli TolB protein precursor SW:TOLB_ECOLI (P19935) (430 aa) fasta scores: E(): 0%2C 84.9%25 id in 430 aa;gbkey=CDS;gene=tolB;product=TolB colicin import protein;protein_id=CAL19790.1;transl_table=11
AL590842.1	EMBL	gene	1271532	1272038	.	+	.	ID=gene1127;Name=excC;gbkey=Gene;gene=excC;gene_biotype=protein_coding;gene_synonym=pal;locus_tag=YPO1125
AL590842.1	EMBL	CDS	1271532	1272038	.	+	0	ID=cds1100;Parent=gene1127;Dbxref=GOA:Q7CH55,InterPro:IPR006664,InterPro:IPR006665,InterPro:IPR006690,InterPro:IPR014169,PDB:4PWT,PDB:4R40,UniProtKB/TrEMBL:Q7CH55,NCBI_GP:CAL19791.1;Name=CAL19791.1;Note=Similar to Escherichia coli peptidoglycan-associated lipoprotein precursor Pal or ExcC SW:PAL_ECOLI (P07176) (173 aa) fasta scores: E(): 0%2C 84.4%25 id in 173 aa%2C and to Vibrio cholerae peptidoglycan-associated lipoprotein vc1835 TR:Q9KR12 (EMBL:AE004259) (172 aa) fasta scores: E(): 0%2C59.9%25 id in 172 aa;gbkey=CDS;gene=excC;inference=similar to sequence:INSDC:AE004259;product=peptidoglycan-associated lipoprotein Pal;protein_id=CAL19791.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1271565	1271597	.	+	.	ID=id2533;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=excC;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	1271730	1272017	.	+	.	ID=id2534;Note=Pfam match to entry PF00691 OmpA%2C OmpA family%2C score 171.40%2C E-value 1.5e-47;gbkey=misc_feature;gene=excC;inference=protein motif:PF00691
AL590842.1	EMBL	sequence_feature	1271829	1271963	.	+	.	ID=id2535;Note=PS01068 OmpA-like domain.;gbkey=misc_feature;gene=excC;inference=protein motif:ProSite:PS01068
AL590842.1	EMBL	gene	1272048	1272857	.	+	.	ID=gene1128;Name=YPO1126;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1126
AL590842.1	EMBL	CDS	1272048	1272857	.	+	0	ID=cds1101;Parent=gene1128;Dbxref=InterPro:IPR011990,InterPro:IPR013026,InterPro:IPR014162,InterPro:IPR019734,InterPro:IPR026930,UniProtKB/TrEMBL:Q0WHR9,NCBI_GP:CAL19792.1;Name=CAL19792.1;Note=Similar to Escherichia coli hypothetical 28.2 kDa protein in pal-lysT intergenic region precursor YbgF SW:YBGF_ECOLI (P45955) (263 aa) fasta scores: E(): 0%2C 70.0%25 id in 270 aa%2C and to Pseudomonas aeruginosa periplasmic protein TR:Q9RNV2 (EMBL:AF177774) (274 aa) fasta scores: E(): 6.6e-17%2C 34.2%25 id in 225 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF177774;product=putative exported protein;protein_id=CAL19792.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1272603	1272704	.	+	.	ID=id2536;Note=Pfam match to entry PF00515 TPR%2C TPR Domain%2C score 8.70%2C E-value 5.6;gbkey=misc_feature;inference=protein motif:PF00515
AL590842.1	EMBL	sequence_feature	1272714	1272815	.	+	.	ID=id2537;Note=Pfam match to entry PF00515 TPR%2C TPR Domain%2C score 11.80%2C E-value 2.6;gbkey=misc_feature;inference=protein motif:PF00515
AL590842.1	EMBL	tRNA	1273048	1273123	.	+	.	ID=rna27;Note=tRNA Lys anticodon TTT%2C Cove score 95.27;gbkey=tRNA;product=tRNA-Lys
AL590842.1	EMBL	exon	1273048	1273123	.	+	.	ID=id2538;Parent=rna27;Note=tRNA Lys anticodon TTT%2C Cove score 95.27;gbkey=tRNA;product=tRNA-Lys
AL590842.1	EMBL	tRNA	1273151	1273226	.	+	.	ID=rna28;Note=tRNA Lys anticodon TTT%2C Cove score 95.27;gbkey=tRNA;product=tRNA-Lys
AL590842.1	EMBL	exon	1273151	1273226	.	+	.	ID=id2539;Parent=rna28;Note=tRNA Lys anticodon TTT%2C Cove score 95.27;gbkey=tRNA;product=tRNA-Lys
AL590842.1	EMBL	tRNA	1273255	1273324	.	+	.	ID=rna29;Note=tRNA Pseudo anticodon TTT%2C Cove score 40.49;gbkey=tRNA
AL590842.1	EMBL	exon	1273255	1273324	.	+	.	ID=id2540;Parent=rna29;Note=tRNA Pseudo anticodon TTT%2C Cove score 40.49;gbkey=tRNA
AL590842.1	EMBL	gene	1273693	1274754	.	+	.	ID=gene1129;Name=nadA;gbkey=Gene;gene=nadA;gene_biotype=protein_coding;gene_synonym=nicA;locus_tag=YPO1127
AL590842.1	EMBL	CDS	1273693	1274754	.	+	0	ID=cds1102;Parent=gene1129;Dbxref=GOA:Q8ZGY8,InterPro:IPR003473,InterPro:IPR023513,NCBI_GP:CAL19793.1;Name=CAL19793.1;Note=Similar to Escherichia coli quinolinate synthetase A NadA or NicA SW:NADA_ECOLI (P11458) (347 aa) fasta scores: E(): 0%2C 82.1%25 id in 346 aa;gbkey=CDS;gene=nadA;product=quinolinate synthetase A;protein_id=CAL19793.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1273777	1274715	.	+	.	ID=id2541;Note=Pfam match to entry PF02445 NadA%2C %2C score 609.80%2CE-value 1.6e-179;gbkey=misc_feature;gene=nadA;inference=protein motif:PF02445
AL590842.1	EMBL	gene	1274876	1275601	.	+	.	ID=gene1130;Name=pnuC;gbkey=Gene;gene=pnuC;gene_biotype=protein_coding;locus_tag=YPO1128
AL590842.1	EMBL	CDS	1274876	1275601	.	+	0	ID=cds1103;Parent=gene1130;Dbxref=GOA:Q7CH56,InterPro:IPR006419,UniProtKB/TrEMBL:Q7CH56,NCBI_GP:CAL19794.1;Name=CAL19794.1;Note=Similar to Escherichia coli PnuC protein SW:PNUC_ECOLI (P31215) (239 aa) fasta scores: E(): 0%2C 76.1%25 id in 238 aa;gbkey=CDS;gene=pnuC;inference=protein motif:TMHMM:2.0;product=intergral membrane NMN transport protein PnuC;protein_id=CAL19794.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1274933	1274992	.	+	.	ID=id2542;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=pnuC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1275011	1275079	.	+	.	ID=id2543;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=pnuC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1275089	1275142	.	+	.	ID=id2544;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=pnuC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1275203	1275271	.	+	.	ID=id2545;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=pnuC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1275347	1275406	.	+	.	ID=id2546;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=pnuC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1275425	1275484	.	+	.	ID=id2547;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=pnuC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1275494	1275553	.	+	.	ID=id2548;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=pnuC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1275716	1276654	.	-	.	ID=gene1131;Name=YPO1129;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1129
AL590842.1	EMBL	CDS	1275716	1276654	.	-	0	ID=cds1104;Parent=gene1131;Dbxref=GOA:Q8ZGY6,InterPro:IPR002524,InterPro:IPR023500,InterPro:IPR027469,NCBI_GP:CAL19795.1;Name=CAL19795.1;Note=Similar to Escherichia coli hypothetical 34.7 kDa protein in pnuC-aroG intergenic region YbgR SW:YBGR_ECOLI (P75757) (313 aa) fasta scores: E(): 0%2C 66.1%25 id in 307 aa%2Cand to Bacillus subtilis cation transport protein TR:O07084 (EMBL:U93876) (311 aa) fasta scores: E(): 0%2C 41.4%25 id in 309 aa;gbkey=CDS;inference=similar to sequence:INSDC:U93876;product=putative cation transport protein;protein_id=CAL19795.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1275791	1276450	.	-	.	ID=id2549;Note=Pfam match to entry PF01545 Cation_efflux%2C Cation efflux family%2C score 250.50%2C E-value 2.3e-71;gbkey=misc_feature;inference=protein motif:PF01545
AL590842.1	EMBL	sequence_feature	1276139	1276204	.	-	.	ID=id2550;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1276244	1276309	.	-	.	ID=id2551;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1276355	1276420	.	-	.	ID=id2552;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1276460	1276510	.	-	.	ID=id2553;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1276541	1276606	.	-	.	ID=id2554;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	pseudogene	1277103	1278062	.	+	.	ID=gene1132;Name=aroG;gbkey=Gene;gene=aroG;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO1130;part=1/2;pseudo=true
AL590842.1	EMBL	pseudogene	1280022	1280114	.	+	.	ID=gene1132;Name=aroG;gbkey=Gene;gene=aroG;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO1130;part=2/2;pseudo=true
AL590842.1	EMBL	CDS	1277103	1278062	.	+	0	ID=cds1105;Parent=gene1132;Dbxref=PSEUDO:CAL19796.1;Note=Similar to Escherichia coli phospho-2-dehydro-3-deoxyheptonate aldolase%2C Phe-sensitive AroG SW:AROG_ECOLI (P00886) (350 aa) fasta scores: E(): 0%2C86.6%25 id in 320 aa. The IS insertion occurred near the C-terminal end (following codon 320). This CDS is disrupted by the insertion of IS100. The insertion occurred near the C-terminus. It is not clear whether this insertion affects the function of the protein.;gbkey=CDS;gene=aroG;product=phospho-2-dehydro-3-deoxyheptonate aldolase%2Cphe-sensitive%2C AroG (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	CDS	1280022	1280114	.	+	0	ID=cds1105;Parent=gene1132;Dbxref=PSEUDO:CAL19796.1;Note=Similar to Escherichia coli phospho-2-dehydro-3-deoxyheptonate aldolase%2C Phe-sensitive AroG SW:AROG_ECOLI (P00886) (350 aa) fasta scores: E(): 0%2C86.6%25 id in 320 aa. The IS insertion occurred near the C-terminal end (following codon 320). This CDS is disrupted by the insertion of IS100. The insertion occurred near the C-terminus. It is not clear whether this insertion affects the function of the protein.;gbkey=CDS;gene=aroG;product=phospho-2-dehydro-3-deoxyheptonate aldolase%2Cphe-sensitive%2C AroG (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	1277112	1278092	.	+	.	ID=id2555;Note=Pfam match to entry PF00793 DAHP_synth_1%2C DAHP synthetase family%2C score 755.60%2C E-value 2e-223;gbkey=misc_feature;inference=protein motif:PF00793
AL590842.1	EMBL	repeat_region	1278063	1280016	.	-	.	ID=id2556;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	1278063	1278090	.	+	.	ID=id2557;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1278129	1278911	.	-	.	ID=gene1133;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO1131
AL590842.1	EMBL	CDS	1278129	1278911	.	-	0	ID=cds1106;Parent=gene1133;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL19797.1;Name=CAL19797.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL19797.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1278204	1278743	.	-	.	ID=id2558;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	1278561	1278584	.	-	.	ID=id2559;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1278908	1279930	.	-	.	ID=gene1134;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO1132
AL590842.1	EMBL	CDS	1278908	1279930	.	-	0	ID=cds1107;Parent=gene1134;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL19798.1;Name=CAL19798.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL19798.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1279052	1279585	.	-	.	ID=id2560;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	sequence_feature	1279814	1279879	.	-	.	ID=id2561;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	1279823	1279906	.	-	.	ID=id2562;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	INVERTED	1279989	1280016	.	-	.	ID=id2563;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1280296	1281048	.	-	.	ID=gene1135;Name=gpm;gbkey=Gene;gene=gpm;gene_biotype=protein_coding;gene_synonym=gpmA;locus_tag=YPO1133
AL590842.1	EMBL	CDS	1280296	1281048	.	-	0	ID=cds1108;Parent=gene1135;Dbxref=GOA:Q8ZGY5,InterPro:IPR001345,InterPro:IPR005952,InterPro:IPR013078,InterPro:IPR029033,NCBI_GP:CAL19799.1;Name=CAL19799.1;Note=Similar to Escherichia coli phosphoglycerate mutase 1 SW:PMG1_ECOLI (P31217) (249 aa) fasta scores: E(): 0%2C88.0%25 id in 249 aa;gbkey=CDS;gene=gpm;product=phosphoglycerate mutase 1;protein_id=CAL19799.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1280386	1281030	.	-	.	ID=id2564;Note=Pfam match to entry PF00300 PGAM%2C Phosphoglycerate mutase family%2C score 447.60%2C E-value 1.1e-130;gbkey=misc_feature;gene=gpm;inference=protein motif:PF00300
AL590842.1	EMBL	sequence_feature	1280998	1281027	.	-	.	ID=id2565;Note=PS00175 Phosphoglycerate mutase family phosphohistidine signature.;gbkey=misc_feature;gene=gpm;inference=protein motif:ProSite:PS00175
AL590842.1	EMBL	gene	1281395	1281730	.	-	.	ID=gene1136;Name=psiF;gbkey=Gene;gene=psiF;gene_biotype=protein_coding;locus_tag=YPO1134
AL590842.1	EMBL	CDS	1281395	1281730	.	-	0	ID=cds1109;Parent=gene1136;Dbxref=InterPro:IPR011690,UniProtKB/TrEMBL:Q7CH57,NCBI_GP:CAL19800.1;Name=CAL19800.1;Note=Similar to Escherichia coli phosphate starvation-inducible protein PsiF precursor psiF SW:PSIF_ECOLI (P27295) (106 aa) fasta scores: E(): 1.2e-15%2C54.5%25 id in 112 aa;gbkey=CDS;gene=psiF;product=putative starvation-inducible protein;protein_id=CAL19800.1;transl_table=11
AL590842.1	EMBL	pseudogene	1282023	1283092	.	-	.	ID=gene1137;Name=galM;gbkey=Gene;gene=galM;gene_biotype=pseudogene;locus_tag=YPO1135;pseudo=true
AL590842.1	EMBL	CDS	1282023	1283092	.	-	0	ID=cds1110;Parent=gene1137;Note=Similar to Escherichia coli aldose 1-epimerase galM SW:GALM_ECOLI (P40681) (346 aa) fasta scores: E(): 0%2C 60.2%25 id in 344 aa. There is a frameshift following codon 39. The frameshift occurs within a homopolymeric tract of 6G. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=galM;product=aldose 1-epimerase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	1282038	1282919	.	-	.	ID=id2566;Note=Pfam match to entry PF01263 Aldose_epim%2C Aldose 1-epimerase%2C score 377.60%2C E-value 1.3e-109;gbkey=misc_feature;gene=galM;inference=protein motif:PF01263
AL590842.1	EMBL	sequence_feature	1282533	1282562	.	-	.	ID=id2567;Note=PS00545 Aldose 1-epimerase putative active site.;gbkey=misc_feature;gene=galM;inference=protein motif:ProSite:PS00545
AL590842.1	EMBL	gene	1283086	1284237	.	-	.	ID=gene1138;Name=galA;gbkey=Gene;gene=galA;gene_biotype=protein_coding;gene_synonym=galK;locus_tag=YPO1137
AL590842.1	EMBL	CDS	1283086	1284237	.	-	0	ID=cds1111;Parent=gene1138;Dbxref=GOA:Q8ZGY3,InterPro:IPR000705,InterPro:IPR006203,InterPro:IPR006204,InterPro:IPR006206,InterPro:IPR013750,InterPro:IPR014721,InterPro:IPR019539,InterPro:IPR019741,InterPro:IPR020568,InterPro:IPR022963,NCBI_GP:CAL19802.1;Name=CAL19802.1;Note=Similar to Escherichia coli galactokinase SW:GAL1_ECOLI (P06976) (381 aa) fasta scores: E(): 0%2C 72.5%25 id in 382 aa;gbkey=CDS;gene=galA;product=galactokinase;protein_id=CAL19802.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1283737	1283964	.	-	.	ID=id2568;Note=Pfam match to entry PF00288 GHMP_kinases%2C GHMP kinases putative ATP-binding proteins%2C score 83.90%2C E-value 2.5e-22;gbkey=misc_feature;gene=galA;inference=protein motif:PF00288
AL590842.1	EMBL	sequence_feature	1283842	1283877	.	-	.	ID=id2569;Note=PS00627 GHMP kinases putative ATP-binding domain.;gbkey=misc_feature;gene=galA;inference=protein motif:ProSite:PS00627
AL590842.1	EMBL	sequence_feature	1284124	1284159	.	-	.	ID=id2570;Note=PS00106 Galactokinase signature.;gbkey=misc_feature;gene=galA;inference=protein motif:ProSite:PS00106
AL590842.1	EMBL	gene	1284234	1285286	.	-	.	ID=gene1139;Name=galB;gbkey=Gene;gene=galB;gene_biotype=protein_coding;gene_synonym=galT;locus_tag=YPO1138
AL590842.1	EMBL	CDS	1284234	1285286	.	-	0	ID=cds1112;Parent=gene1139;Dbxref=GOA:Q7CH58,InterPro:IPR001937,InterPro:IPR005849,InterPro:IPR005850,InterPro:IPR011146,InterPro:IPR019779,UniProtKB/TrEMBL:Q7CH58,NCBI_GP:CAL19803.1;Name=CAL19803.1;Note=Similar to Escherichia coli galactose-1-phosphate uridylyltransferase GalT or GalB SW:GAL7_ECOLI (P09148) (348 aa) fasta scores: E(): 0%2C 82.4%25 id in 347 aa;gbkey=CDS;gene=galB;product=galactose-1-phosphate uridylyltransferase;protein_id=CAL19803.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1284252	1285283	.	-	.	ID=id2571;Note=Pfam match to entry PF01087 GalP_UDP_transf%2CGalactose-1-phosphate uridyl transferase%2C score 702.60%2CE-value 1.8e-207;gbkey=misc_feature;gene=galB;inference=protein motif:PF01087
AL590842.1	EMBL	sequence_feature	1284783	1284836	.	-	.	ID=id2572;Note=PS00117 Galactose-1-phosphate uridyl transferase family 1 active site signature.;gbkey=misc_feature;gene=galB;inference=protein motif:ProSite:PS00117
AL590842.1	EMBL	gene	1285296	1286312	.	-	.	ID=gene1140;Name=galD;gbkey=Gene;gene=galD;gene_biotype=protein_coding;gene_synonym=galE;locus_tag=YPO1139
AL590842.1	EMBL	CDS	1285296	1286312	.	-	0	ID=cds1113;Parent=gene1140;Dbxref=GOA:Q9F7D4,InterPro:IPR001509,InterPro:IPR005886,InterPro:IPR016040,InterPro:IPR025308,NCBI_GP:CAL19804.1;Name=CAL19804.1;Note=Similar to Escherichia coli UDP-glucose 4-epimerase GalE or GalD SW:GALE_ECOLI (P09147) (338 aa) fasta scores: E(): 0%2C 76.0%25 id in 338 aa. Previously sequenced in Yersinia pestis as TR:AAG22000 (EMBL:AF282311) (338 aa) fasta scores: E(): 0%2C 100.0%25 id in 338 aa;gbkey=CDS;gene=galD;inference=similar to sequence:INSDC:AF282311;product=UDP-glucose 4-epimerase;protein_id=CAL19804.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1285314	1286306	.	-	.	ID=id2573;Note=Pfam match to entry PF01370 Epimerase%2C NAD dependent epimerase/dehydratase family%2C score 559.10%2C E-value 2.9e-164;gbkey=misc_feature;gene=galD;inference=protein motif:PF01370
AL590842.1	EMBL	gene	1286672	1287490	.	-	.	ID=gene1141;Name=YPO1140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1140
AL590842.1	EMBL	CDS	1286672	1287490	.	-	0	ID=cds1114;Parent=gene1141;Dbxref=GOA:Q7CH59,InterPro:IPR003675,UniProtKB/TrEMBL:Q7CH59,NCBI_GP:CAL19805.1;Name=CAL19805.1;Note=Similar to Vibrio cholerae hypothetical protein VC1074 TR:Q9KT31 (EMBL:AE004189) (276 aa) fasta scores: E(): 0%2C 45.5%25 id in 275 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004189;product=putative membrane protein;protein_id=CAL19805.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1286681	1286746	.	-	.	ID=id2574;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1286768	1286833	.	-	.	ID=id2575;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1286849	1286899	.	-	.	ID=id2576;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1286939	1286995	.	-	.	ID=id2577;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1287011	1287076	.	-	.	ID=id2578;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1287113	1287178	.	-	.	ID=id2579;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1287239	1287304	.	-	.	ID=id2580;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1287326	1287391	.	-	.	ID=id2581;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1287404	1287469	.	-	.	ID=id2582;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1287707	1289197	.	-	.	ID=gene1142;Name=modF;gbkey=Gene;gene=modF;gene_biotype=protein_coding;gene_synonym=phrA;locus_tag=YPO1142
AL590842.1	EMBL	CDS	1287707	1289197	.	-	0	ID=cds1115;Parent=gene1142;Dbxref=GOA:Q0WHQ7,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WHQ7,NCBI_GP:CAL19806.1;Name=CAL19806.1;Note=Similar to Escherichia coli putative molybdenum transport ATP-binding protein ModF or PhrA SW:MODF_ECOLI (P31060) (490 aa) fasta scores: E(): 0%2C 75.0%25 id in 484 aa;gbkey=CDS;gene=modF;product=putative molybdenum transport ATP-binding protein modF;protein_id=CAL19806.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1287761	1288342	.	-	.	ID=id2583;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 155.20%2C E-value 1.1e-42;gbkey=misc_feature;gene=modF;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1288298	1288321	.	-	.	ID=id2584;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=modF;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1288565	1289113	.	-	.	ID=id2585;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 87.10%2C E-value 3.7e-22;gbkey=misc_feature;gene=modF;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1289069	1289092	.	-	.	ID=id2586;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=modF;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1289307	1290098	.	-	.	ID=gene1143;Name=modE;gbkey=Gene;gene=modE;gene_biotype=protein_coding;gene_synonym=modR;locus_tag=YPO1143
AL590842.1	EMBL	CDS	1289307	1290098	.	-	0	ID=cds1116;Parent=gene1143;Dbxref=GOA:P58497,InterPro:IPR000847,InterPro:IPR003725,InterPro:IPR004606,InterPro:IPR005116,InterPro:IPR008995,InterPro:IPR011991,InterPro:IPR016462,NCBI_GP:CAL19807.1;Name=CAL19807.1;Note=Similar to Escherichia coli molybdenum transport protein SW:MODE_ECOLI (P46930) (262 aa) fasta scores: E(): 0%2C 70.5%25 id in 264 aa;gbkey=CDS;gene=modE;product=molybdenum transport protein ModE;protein_id=CAL19807.1;transl_table=11
AL590842.1	EMBL	gene	1290415	1290567	.	+	.	ID=gene1144;Name=YPO1144;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1144
AL590842.1	EMBL	CDS	1290415	1290567	.	+	0	ID=cds1117;Parent=gene1144;Dbxref=InterPro:IPR019702,UniProtKB/TrEMBL:Q7CH60,NCBI_GP:CAL19808.1;Name=CAL19808.1;Note=Similar to Escherichia coli hypothetical 5.3 kDa protein in modE-modA intergenic region precursor YbhT SW:YBHT_ECOLI (P75759) (49 aa) fasta scores: E(): 8.4e-11%2C82.5%25 id in 40 aa. Also contains region similar to many eukaryotic ATPase subunits eg. Mesembryanthemum crystallinum vacuolar H+ ATPase subunit C TR:Q9S953 (EMBL:UNKNOWN ACCESSION) (76 aa) fasta scores: E(): 3.9%2C54.5%25 id in 33 aa;gbkey=CDS;inference=similar to sequence:UniProtKB:Q9S953;product=putative membrane protein;protein_id=CAL19808.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1290433	1290501	.	+	.	ID=id2587;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1290802	1291581	.	+	.	ID=gene1145;Name=modA;gbkey=Gene;gene=modA;gene_biotype=protein_coding;locus_tag=YPO1145
AL590842.1	EMBL	CDS	1290802	1291581	.	+	0	ID=cds1118;Parent=gene1145;Dbxref=GOA:Q0WHQ4,InterPro:IPR005950,UniProtKB/TrEMBL:Q0WHQ4,NCBI_GP:CAL19809.1;Name=CAL19809.1;Note=Similar to Escherichia coli molybdate-binding periplasmic protein precursor ModA SW:MODA_ECOLI (P37329) (257 aa) fasta scores: E(): 0%2C 71.1%25 id in 246 aa;gbkey=CDS;gene=modA;product=molybdate-binding periplasmic protein precursor;protein_id=CAL19809.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1290826	1290885	.	+	.	ID=id2588;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=modA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1291581	1292276	.	+	.	ID=gene1146;Name=chlJ;gbkey=Gene;gene=chlJ;gene_biotype=protein_coding;gene_synonym=modB;locus_tag=YPO1146
AL590842.1	EMBL	CDS	1291581	1292276	.	+	0	ID=cds1119;Parent=gene1146;Dbxref=GOA:Q7CH61,InterPro:IPR000515,InterPro:IPR011867,UniProtKB/TrEMBL:Q7CH61,NCBI_GP:CAL19810.1;Name=CAL19810.1;Note=Similar to Escherichia coli molybdenum transport system permease protein Modb or ChlJ SW:MODB_ECOLI (P09834) (229 aa) fasta scores: E(): 0%2C 76.3%25 id in 228 aa;gbkey=CDS;gene=chlJ;inference=protein motif:TMHMM:2.0;product=molybdenum transport system permease protein ModB;protein_id=CAL19810.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1291623	1291691	.	+	.	ID=id2589;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=chlJ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1291725	1291793	.	+	.	ID=id2590;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=chlJ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1291851	1291919	.	+	.	ID=id2591;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=chlJ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1291920	1292150	.	+	.	ID=id2592;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 78.90%2C E-value 1e-19;gbkey=misc_feature;gene=chlJ;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	1291980	1292048	.	+	.	ID=id2593;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=chlJ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1292169	1292237	.	+	.	ID=id2594;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=chlJ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1292270	1293349	.	+	.	ID=gene1147;Name=chlD;gbkey=Gene;gene=chlD;gene_biotype=protein_coding;gene_synonym=modC,narD;locus_tag=YPO1147
AL590842.1	EMBL	CDS	1292270	1293349	.	+	0	ID=cds1120;Parent=gene1147;Dbxref=GOA:Q8ZGX6,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR004606,InterPro:IPR005116,InterPro:IPR008995,InterPro:IPR011868,InterPro:IPR015852,InterPro:IPR017871,InterPro:IPR027417,NCBI_GP:CAL19811.1;Name=CAL19811.1;Note=Similar to Escherichia coli molybdenum transport ATP-binding protein ModC or ChlD or NarD SW:MODC_ECOLI (P09833) (352 aa) fasta scores: E(): 0%2C 69.1%25 id in 349 aa;gbkey=CDS;gene=chlD;product=molybdenum transport ATP-binding protein ModC;protein_id=CAL19811.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1292339	1292884	.	+	.	ID=id2595;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 203.30%2C E-value 3.7e-57;gbkey=misc_feature;gene=chlD;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1292360	1292383	.	+	.	ID=id2596;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=chlD;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1292654	1292698	.	+	.	ID=id2597;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=chlD;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	1293405	1294226	.	-	.	ID=gene1148;Name=YPO1148;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1148
AL590842.1	EMBL	CDS	1293405	1294226	.	-	0	ID=cds1121;Parent=gene1148;Dbxref=GOA:Q7CH63,InterPro:IPR000150,InterPro:IPR001757,InterPro:IPR006379,InterPro:IPR023214,UniProtKB/TrEMBL:Q7CH63,NCBI_GP:CAL19812.1;Name=CAL19812.1;Note=Similar to Escherichia coli hypothetical protein YbhA SW:YBHA_ECOLI (P21829) (272 aa) fasta scores: E(): 0%2C64.0%25 id in 272 aa%2C and to Vibrio cholerae hypothetical protein VCA0243 TR:Q9KMS7 (EMBL:AE004364) (273 aa) fasta scores: E(): 0%2C 39.2%25 id in 273 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004364;product=conserved hypothetical protein;protein_id=CAL19812.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1293447	1294214	.	-	.	ID=id2598;Note=Pfam match to entry PF00592 DUF3%2C Cof family DUF3%2Cscore 280.90%2C E-value 1.6e-80;gbkey=misc_feature;inference=protein motif:PF00592
AL590842.1	EMBL	sequence_feature	1293498	1293566	.	-	.	ID=id2599;Note=PS01229 Hypothetical cof family signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS01229
AL590842.1	EMBL	gene	1294517	1295521	.	+	.	ID=gene1149;Name=YPO1149;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1149
AL590842.1	EMBL	CDS	1294517	1295521	.	+	0	ID=cds1122;Parent=gene1149;Dbxref=GOA:Q8ZGX4,InterPro:IPR011045,InterPro:IPR015943,InterPro:IPR019405,InterPro:IPR022528,NCBI_GP:CAL19813.1;Name=CAL19813.1;Note=Similar to Escherichia coli hypothetical protein YbhE SW:YBHE_ECOLI (P52697) (331 aa) fasta scores: E(): 0%2C56.8%25 id in 329 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) hypothetical protein BU293 SW:Y293_BUCAI (P57380) (334 aa) fasta scores: E(): 0%2C 35.8%25 id in 330 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19813.1;transl_table=11
AL590842.1	EMBL	gene	1295706	1296974	.	-	.	ID=gene1150;Name=bioA;gbkey=Gene;gene=bioA;gene_biotype=protein_coding;locus_tag=YPO1150
AL590842.1	EMBL	CDS	1295706	1296974	.	-	0	ID=cds1123;Parent=gene1150;Dbxref=GOA:Q0WHP9,InterPro:IPR005814,InterPro:IPR005815,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q0WHP9,NCBI_GP:CAL19814.1;Name=CAL19814.1;Note=Similar to many eg. Escherichia coli adenosylmethionine-8-amino-7-oxononanoate aminotransferase BioA SW:BIOA_ECOLI (P12995) (429 aa) fasta scores: E(): 0%2C74.6%25 id in 417 aa;gbkey=CDS;gene=bioA;product=adenosylmethionine-8-amino-7-oxononanoate aminotransferase;protein_id=CAL19814.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1295766	1296875	.	-	.	ID=id2600;Note=Pfam match to entry PF00202 aminotran_3%2CAminotransferases class-III pyridoxal-phosphate%2C score 527.10%2C E-value 8.3e-183;gbkey=misc_feature;gene=bioA;inference=protein motif:PF00202
AL590842.1	EMBL	sequence_feature	1296138	1296251	.	-	.	ID=id2601;Note=PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.;gbkey=misc_feature;gene=bioA;inference=protein motif:ProSite:PS00600
AL590842.1	EMBL	gene	1297073	1298110	.	+	.	ID=gene1151;Name=bioB;gbkey=Gene;gene=bioB;gene_biotype=protein_coding;locus_tag=YPO1151
AL590842.1	EMBL	CDS	1297073	1298110	.	+	0	ID=cds1124;Parent=gene1151;Dbxref=GOA:Q7CH65,InterPro:IPR002684,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR010722,InterPro:IPR013785,InterPro:IPR024177,NCBI_GP:CAL19815.1;Name=CAL19815.1;Note=Similar to many eg. Escherichia coli biotin synthase BioB SW:BIOB_ECOLI (P12996) (346 aa) fasta scores: E(): 0%2C84.6%25 id in 344 aa;gbkey=CDS;gene=bioB;product=biotin synthase;protein_id=CAL19815.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1297085	1298005	.	+	.	ID=id2602;Note=Pfam match to entry PF01792 Biotin_synth%2C Biotin synthase%2C score 689.90%2C E-value 1.2e-203;gbkey=misc_feature;gene=bioB;inference=protein motif:PF01792
AL590842.1	EMBL	gene	1298110	1299261	.	+	.	ID=gene1152;Name=bioF;gbkey=Gene;gene=bioF;gene_biotype=protein_coding;locus_tag=YPO1152
AL590842.1	EMBL	CDS	1298110	1299261	.	+	0	ID=cds1125;Parent=gene1152;Dbxref=GOA:Q7CH66,InterPro:IPR001917,InterPro:IPR004723,InterPro:IPR004839,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR022834,NCBI_GP:CAL19816.1;Name=CAL19816.1;Note=Similar to many eg. Escherichia coli 8-amino-7-oxononanoate synthase BioF SW:BIOF_ECOLI (P12998) (384 aa) fasta scores: E(): 0%2C 65.8%25 id in 383 aa;gbkey=CDS;gene=bioF;product=8-amino-7-oxononanoate synthase;protein_id=CAL19816.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1298350	1299186	.	+	.	ID=id2603;Note=Pfam match to entry PF00222 aminotran_2%2CAminotransferases class-II%2C score 337.40%2C E-value 1.6e-97;gbkey=misc_feature;gene=bioF;inference=protein motif:PF00222
AL590842.1	EMBL	sequence_feature	1298806	1298835	.	+	.	ID=id2604;Note=PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site.;gbkey=misc_feature;gene=bioF;inference=protein motif:ProSite:PS00599
AL590842.1	EMBL	gene	1299245	1300048	.	+	.	ID=gene1153;Name=bioC;gbkey=Gene;gene=bioC;gene_biotype=protein_coding;locus_tag=YPO1153
AL590842.1	EMBL	CDS	1299245	1300048	.	+	0	ID=cds1126;Parent=gene1153;Dbxref=GOA:Q7CH67,InterPro:IPR011814,InterPro:IPR013216,InterPro:IPR029063,NCBI_GP:CAL19817.1;Name=CAL19817.1;Note=Similar to many eg. Escherichia coli biotin synthesis protein BioC SW:BIOC_ECOLI (P12999) (251 aa) fasta scores: E(): 0%2C 49.6%25 id in 250 aa;gbkey=CDS;gene=bioC;product=biotin synthesis protein BioC;protein_id=CAL19817.1;transl_table=11
AL590842.1	EMBL	gene	1300041	1300763	.	+	.	ID=gene1154;Name=bioD;gbkey=Gene;gene=bioD;gene_biotype=protein_coding;locus_tag=YPO1154
AL590842.1	EMBL	CDS	1300041	1300763	.	+	0	ID=cds1127;Parent=gene1154;Dbxref=GOA:Q8ZGW9,InterPro:IPR004472,InterPro:IPR027417,NCBI_GP:CAL19818.1;Name=CAL19818.1;Note=Similar to many eg. Escherichia coli dethiobiotin synthetase BioD SW:BIOD_ECOLI (P13000) (224 aa) fasta scores: E(): 0%2C 71.2%25 id in 229 aa;gbkey=CDS;gene=bioD;product=dethiobiotin synthetase;protein_id=CAL19818.1;transl_table=11
AL590842.1	EMBL	gene	1300915	1301625	.	-	.	ID=gene1155;Name=YPO1155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1155
AL590842.1	EMBL	CDS	1300915	1301625	.	-	0	ID=cds1128;Parent=gene1155;Dbxref=GOA:Q7CH68,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CH68,NCBI_GP:CAL19819.1;Name=CAL19819.1;Note=Similar to Synechocystis sp high-affinity branched-chain amino acid transport ATP-binding protein TR:Q55753 (EMBL:D64002) (249 aa) fasta scores: E(): 5.8e-31%2C 43.3%25 id in 238 aa%2C and to Escherichia coli high-affinity branched-chain amino acid transport ATP-binding protein LivF SW:LIVF_ECOLI (P22731) (237 aa) fasta scores: E(): 5.1e-22%2C 36.3%25 id in 237 aa;gbkey=CDS;inference=similar to sequence:INSDC:D64002;product=putative amino acid transporter;protein_id=CAL19819.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1300984	1301547	.	-	.	ID=id2605;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 135.40%2C E-value 1.1e-36;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1301503	1301526	.	-	.	ID=id2606;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1302715	1304730	.	+	.	ID=gene1156;Name=uvrB;gbkey=Gene;gene=uvrB;gene_biotype=protein_coding;locus_tag=YPO1156
AL590842.1	EMBL	CDS	1302715	1304730	.	+	0	ID=cds1129;Parent=gene1156;Dbxref=GOA:Q8ZGW7,InterPro:IPR001650,InterPro:IPR001943,InterPro:IPR004807,InterPro:IPR006935,InterPro:IPR014001,InterPro:IPR024759,InterPro:IPR027417,NCBI_GP:CAL19820.1;Name=CAL19820.1;Note=Similar to many eg. Escherichia coli excinuclease ABC subunit B UvrB SW:UVRB_ECOLI (P07025) (673 aa) fasta scores: E(): 0%2C 85.9%25 id in 673 aa;gbkey=CDS;gene=uvrB;product=excinuclease ABC subunit B;protein_id=CAL19820.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1302829	1302852	.	+	.	ID=id2607;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=uvrB;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1304092	1304352	.	+	.	ID=id2608;Note=Pfam match to entry PF00271 helicase_C%2C Helicases conserved C-terminal domain%2C score 78.20%2C E-value 1.7e-19;gbkey=misc_feature;gene=uvrB;inference=protein motif:PF00271
AL590842.1	EMBL	sequence_feature	1304605	1304712	.	+	.	ID=id2609;Note=Pfam match to entry PF02151 UVR%2C UvrB/uvrC motif%2Cscore 58.00%2C E-value 2e-13;gbkey=misc_feature;gene=uvrB;inference=protein motif:PF02151
AL590842.1	EMBL	gene	1305022	1305267	.	+	.	ID=gene1157;Name=YPO1157;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1157
AL590842.1	EMBL	CDS	1305022	1305267	.	+	0	ID=cds1130;Parent=gene1157;Dbxref=GOA:Q7CH69,InterPro:IPR003034,InterPro:IPR018668,UniProtKB/TrEMBL:Q7CH69,NCBI_GP:CAL19821.1;Name=CAL19821.1;Note=Similar to Vibrio cholerae hypothetical protein VC1816 TR:Q9KR31 (EMBL:AE004257) (71 aa) fasta scores: E(): 6.9e-17%2C 64.7%25 id in 68 aa%2C and to Vibrio marinus genes%2Ccomplete cds%2C similar to eicosapentaenoic acid synthesis gene cluster TR:Q9RA23 (EMBL:AB025342) (72 aa) fasta scores: E(): 1.2e-16%2C 68.3%25 id in 63 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004257;product=conserved hypothetical protein;protein_id=CAL19821.1;transl_table=11
AL590842.1	EMBL	gene	1305398	1306321	.	-	.	ID=gene1158;Name=YPO1158;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1158
AL590842.1	EMBL	CDS	1305398	1306321	.	-	0	ID=cds1131;Parent=gene1158;Dbxref=GOA:P58589,InterPro:IPR002882,InterPro:IPR010119,NCBI_GP:CAL19822.1;Name=CAL19822.1;Note=Similar to Escherichia coli hypothetical protein YbhK SW:YBHK_ECOLI (P75767) (302 aa) fasta scores: E(): 0%2C77.7%25 id in 301 aa%2C and to Vibrio cholerae hypothetical protein VC1023 TR:Q9KT82 (EMBL:AE004184) (296 aa) fasta scores: E(): 0%2C 53.9%25 id in 297 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004184;product=conserved hypothetical protein;protein_id=CAL19822.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1305416	1306288	.	-	.	ID=id2610;Note=Pfam match to entry PF01933 UPF0052%2C Uncharacterised protein family UPF0052%2C score 345.20%2C E-value 7.4e-100;gbkey=misc_feature;inference=protein motif:PF01933
AL590842.1	EMBL	gene	1306853	1307833	.	+	.	ID=gene1159;Name=bisA;gbkey=Gene;gene=bisA;gene_biotype=protein_coding;gene_synonym=chlA,chlA1,moaA,narA;locus_tag=YPO1159
AL590842.1	EMBL	CDS	1306853	1307833	.	+	0	ID=cds1132;Parent=gene1159;Dbxref=GOA:Q8ZGW5,InterPro:IPR000385,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR010505,InterPro:IPR013483,InterPro:IPR013785,NCBI_GP:CAL19823.1;Name=CAL19823.1;Note=Similar to Escherichia coli molybdenum cofactor biosynthesis protein A MoaA SW:MOAA_ECOLI (P30745) (329 aa) fasta scores: E(): 0%2C 78.2%25 id in 326 aa%2C and to Vibrio cholerae molybdenum cofactor biosynthesis protein A VC1024 TR:Q9KT81 (EMBL:AE004184) (334 aa) fasta scores: E(): 0%2C65.0%25 id in 329 aa;gbkey=CDS;gene=bisA;inference=similar to sequence:INSDC:AE004184;product=molybdenum cofactor biosynthesis protein A;protein_id=CAL19823.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1306907	1306942	.	+	.	ID=id2611;Note=PS01305 moaA / nifB / pqqE family signature.;gbkey=misc_feature;gene=bisA;inference=protein motif:ProSite:PS01305
AL590842.1	EMBL	sequence_feature	1307012	1307656	.	+	.	ID=id2612;Note=Pfam match to entry PF01444 MoaA_NifB_PqqE%2C moaA / nifB / pqqE family%2C score 258.80%2C E-value 7.5e-74;gbkey=misc_feature;gene=bisA;inference=protein motif:PF01444
AL590842.1	EMBL	gene	1307934	1308413	.	+	.	ID=gene1160;Name=chlA3;gbkey=Gene;gene=chlA3;gene_biotype=protein_coding;gene_synonym=moaC;locus_tag=YPO1160
AL590842.1	EMBL	CDS	1307934	1308413	.	+	0	ID=cds1133;Parent=gene1160;Dbxref=GOA:Q8ZGW4,InterPro:IPR002820,InterPro:IPR023045,InterPro:IPR023046,NCBI_GP:CAL19824.1;Name=CAL19824.1;Note=Similar to Escherichia coli molybdenum cofactor biosynthesis protein C MoaC SW:MOAC_ECOLI (P30747) (160 aa) fasta scores: E(): 0%2C 87.9%25 id in 157 aa%2C and to Vibrio cholerae molybdenum cofactor biosynthesis protein C VC1026 TR:Q9KT79 (EMBL:AE004184) (160 aa) fasta scores: E(): 0%2C78.5%25 id in 158 aa;gbkey=CDS;gene=chlA3;inference=similar to sequence:INSDC:AE004184;product=molybdenum cofactor biosynthesis protein C;protein_id=CAL19824.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1307976	1308383	.	+	.	ID=id2613;Note=Pfam match to entry PF01967 MoaC%2C MoaC family%2C score 306.40%2C E-value 3.3e-88;gbkey=misc_feature;gene=chlA3;inference=protein motif:PF01967
AL590842.1	EMBL	gene	1308410	1308655	.	+	.	ID=gene1161;Name=chlA4;gbkey=Gene;gene=chlA4;gene_biotype=protein_coding;gene_synonym=chlM,moaD;locus_tag=YPO1161
AL590842.1	EMBL	CDS	1308410	1308655	.	+	0	ID=cds1134;Parent=gene1161;Dbxref=GOA:Q7CH70,InterPro:IPR003749,InterPro:IPR010034,InterPro:IPR012675,InterPro:IPR016155,UniProtKB/TrEMBL:Q7CH70,NCBI_GP:CAL19825.1;Name=CAL19825.1;Note=Similar to Escherichia coli molybdopterin [mpt] converting factor%2C subunit 1 MoaD SW:MOAD_ECOLI (P30748) (81 aa) fasta scores: E(): 2.9e-23%2C 71.6%25 id in 81 aa%2C and to Vibrio cholerae molybdenum cofactor biosynthesis protein D vc1027 TR:Q9KT78 (EMBL:AE004184) (81 aa) fasta scores: E(): 2.4e-17%2C 63.0%25 id in 81 aa;gbkey=CDS;gene=chlA4;inference=similar to sequence:INSDC:AE004184;product=molybdopterin [mpt] converting factor%2C subunit 1;protein_id=CAL19825.1;transl_table=11
AL590842.1	EMBL	gene	1308655	1309110	.	+	.	ID=gene1162;Name=chlA5;gbkey=Gene;gene=chlA5;gene_biotype=protein_coding;gene_synonym=moaE;locus_tag=YPO1162
AL590842.1	EMBL	CDS	1308655	1309110	.	+	0	ID=cds1135;Parent=gene1162;Dbxref=GOA:Q8ZGW2,InterPro:IPR003448,NCBI_GP:CAL19826.1;Name=CAL19826.1;Note=Similar to Escherichia coli molybdopterin [mpt] converting factor%2C subunit 2 MoaE SW:MOAE_ECOLI (P30749) (149 aa) fasta scores: E(): 0%2C 81.7%25 id in 120 aa%2C and to Vibrio cholerae molybdenum cofactor biosynthesis protein E VC1028 TR:Q9KT77 (EMBL:AE004184) (150 aa) fasta scores: E(): 0%2C 68.3%25 id in 120 aa;gbkey=CDS;gene=chlA5;inference=similar to sequence:INSDC:AE004184;product=molybdopterin [mpt] converting factor%2C subunit 2;protein_id=CAL19826.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1308748	1309023	.	+	.	ID=id2614;Note=Pfam match to entry PF02391 MoeA%2C %2C score 123.70%2CE-value 3.4e-33;gbkey=misc_feature;gene=chlA5;inference=protein motif:PF02391
AL590842.1	EMBL	gene	1309253	1309963	.	+	.	ID=gene1163;Name=YPO1163;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1163
AL590842.1	EMBL	CDS	1309253	1309963	.	+	0	ID=cds1136;Parent=gene1163;Dbxref=GOA:Q7CH71,InterPro:IPR006214,UniProtKB/TrEMBL:Q7CH71,NCBI_GP:CAL19827.1;Name=CAL19827.1;Note=Similar to Escherichia coli hypothetical 25.9 kDa protein in moaE-rhlE intergenic region SW:YBHL_ECOLI (P75768) (234 aa) fasta scores: E(): 0%2C 73.3%25 id in 236 aa%2Cand to Borrelia burgdorferi conserved hypothetical integral membrane protein BB0539 TR:O51489 (EMBL:AE001155) (232 aa) fasta scores: E(): 0%2C 49.3%25 id in 215 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE001155;product=putative membrane protein;protein_id=CAL19827.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1309313	1309381	.	+	.	ID=id2615;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1309373	1309960	.	+	.	ID=id2616;Note=Pfam match to entry PF01027 UPF0005%2C Uncharacterized protein family UPF0005%2C score 190.90%2C E-value 2e-53;gbkey=misc_feature;inference=protein motif:PF01027
AL590842.1	EMBL	sequence_feature	1309424	1309492	.	+	.	ID=id2617;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1309511	1309579	.	+	.	ID=id2618;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1309592	1309651	.	+	.	ID=id2619;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1309670	1309738	.	+	.	ID=id2620;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1309751	1309810	.	+	.	ID=id2621;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1309883	1309951	.	+	.	ID=id2622;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	repeat_region	1310053	1310764	.	+	.	ID=id2623;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	1310198	1310656	.	+	.	ID=gene1164;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO1164
AL590842.1	EMBL	CDS	1310198	1310656	.	+	0	ID=cds1137;Parent=gene1164;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL19828.1;Name=CAL19828.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL19828.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1310252	1310563	.	+	.	ID=id2624;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	1310885	1312588	.	-	.	ID=gene1165;Name=betA;gbkey=Gene;gene=betA;gene_biotype=protein_coding;locus_tag=YPO1165
AL590842.1	EMBL	CDS	1310885	1312588	.	-	0	ID=cds1138;Parent=gene1165;Dbxref=GOA:Q8ZGW0,InterPro:IPR000172,InterPro:IPR007867,InterPro:IPR011533,InterPro:IPR012132,NCBI_GP:CAL19829.1;Name=CAL19829.1;Note=Similar to many eg. Escherichia coli choline dehydrogenase BetA SW:BETA_ECOLI (P17444) (556 aa) fasta scores: E(): 0%2C 79.4%25 id in 553 aa%2C and to Homo sapiens choline dehydrogenase ChdH TR:Q9NY17 (EMBL:AJ272267) (482 aa) fasta scores: E(): 0%2C 50.1%25 id in 467 aa;gbkey=CDS;gene=betA;inference=similar to sequence:INSDC:AJ272267;product=choline dehydrogenase;protein_id=CAL19829.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1311008	1312582	.	-	.	ID=id2625;Note=Pfam match to entry PF00732 GMC_oxred%2C GMC oxidoreductases%2C score 963.20%2C E-value 6.6e-286;gbkey=misc_feature;gene=betA;inference=protein motif:PF00732
AL590842.1	EMBL	sequence_feature	1311770	1311814	.	-	.	ID=id2626;Note=PS00624 GMC oxidoreductases signature 2.;gbkey=misc_feature;gene=betA;inference=protein motif:ProSite:PS00624
AL590842.1	EMBL	sequence_feature	1312274	1312345	.	-	.	ID=id2627;Note=PS00623 GMC oxidoreductases signature 1.;gbkey=misc_feature;gene=betA;inference=protein motif:ProSite:PS00623
AL590842.1	EMBL	gene	1312611	1314083	.	-	.	ID=gene1166;Name=betB;gbkey=Gene;gene=betB;gene_biotype=protein_coding;locus_tag=YPO1166
AL590842.1	EMBL	CDS	1312611	1314083	.	-	0	ID=cds1139;Parent=gene1166;Dbxref=GOA:Q8ZGV9,InterPro:IPR011264,InterPro:IPR015590,InterPro:IPR016160,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,InterPro:IPR029510,NCBI_GP:CAL19830.1;Name=CAL19830.1;Note=Similar to Escherichia coli betaine aldehyde dehydrogenase BetB SW:DHAB_ECOLI (P17445) (489 aa) fasta scores: E(): 0%2C 76.7%25 id in 489 aa%2C and to Homo sapiens aldehyde dehydrogenase%2C E3 isozyme AldH9 or AldH7 or AldH9A1 SW:DHAG_HUMAN (P49189) (493 aa) fasta scores: E(): 0%2C 51.3%25 id in 483 aa;gbkey=CDS;gene=betB;product=betaine aldehyde dehydrogenase;protein_id=CAL19830.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1312635	1314044	.	-	.	ID=id2628;Note=Pfam match to entry PF00171 aldedh%2C Aldehyde dehydrogenase family%2C score 804.40%2C E-value 4.1e-238;gbkey=misc_feature;gene=betB;inference=protein motif:PF00171
AL590842.1	EMBL	sequence_feature	1313214	1313249	.	-	.	ID=id2629;Note=PS00070 Aldehyde dehydrogenases cysteine active site.;gbkey=misc_feature;gene=betB;inference=protein motif:ProSite:PS00070
AL590842.1	EMBL	sequence_feature	1313310	1313333	.	-	.	ID=id2630;Note=PS00687 Aldehyde dehydrogenases glutamic acid active site.;gbkey=misc_feature;gene=betB;inference=protein motif:ProSite:PS00687
AL590842.1	EMBL	gene	1314141	1314737	.	-	.	ID=gene1167;Name=betI;gbkey=Gene;gene=betI;gene_biotype=protein_coding;locus_tag=YPO1167
AL590842.1	EMBL	CDS	1314141	1314737	.	-	0	ID=cds1140;Parent=gene1167;Dbxref=GOA:Q8ZGV8,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR011075,InterPro:IPR015893,InterPro:IPR017757,InterPro:IPR023772,NCBI_GP:CAL19831.1;Name=CAL19831.1;Note=Similar to Escherichia coli regulatory protein of the osmoregulatory choline-glycine betaine pathway BetI SW:BETI_ECOLI (P17446) (195 aa) fasta scores: E(): 0%2C 64.1%25 id in 192 aa;gbkey=CDS;gene=betI;product=TetR-family regulatory protein;protein_id=CAL19831.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1314537	1314584	.	-	.	ID=id2631;Note=PS00038 Myc-type%2C 'helix-loop-helix' dimerization domain signature.;gbkey=misc_feature;gene=betI;inference=protein motif:ProSite:PS00038
AL590842.1	EMBL	sequence_feature	1314558	1314698	.	-	.	ID=id2632;Note=Pfam match to entry PF00440 tetR%2C Bacterial regulatory proteins%2C tetR family%2C score 53.90%2C E-value 2.3e-12;gbkey=misc_feature;gene=betI;inference=protein motif:PF00440
AL590842.1	EMBL	sequence_feature	1314570	1314662	.	-	.	ID=id2633;Note=PS01081 Bacterial regulatory proteins%2C tetR family signature.;gbkey=misc_feature;gene=betI;inference=protein motif:ProSite:PS01081
AL590842.1	EMBL	sequence_feature	1314585	1314650	.	-	.	ID=id2634;Note=Predicted helix-turn-helix motif with score 1758 (+5.17 SD) at aa 30-51%2C sequence ASIAQIAKRAGVSNGIISHYFR;gbkey=misc_feature;gene=betI
AL590842.1	EMBL	gene	1315102	1317123	.	+	.	ID=gene1168;Name=betT;gbkey=Gene;gene=betT;gene_biotype=protein_coding;locus_tag=YPO1168
AL590842.1	EMBL	CDS	1315102	1317123	.	+	0	ID=cds1141;Parent=gene1168;Dbxref=GOA:Q0WHN1,InterPro:IPR000060,InterPro:IPR018093,UniProtKB/TrEMBL:Q0WHN1,NCBI_GP:CAL19832.1;Name=CAL19832.1;Note=Similar to Escherichia coli high-affinity choline transport protein BetT SW:BETT_ECOLI (P17447) (677 aa) fasta scores: E(): 0%2C 77.6%25 id in 678 aa%2C and to Erwinia amylovora high-affinity choline transport protein BetT TR:AAG31040 (EMBL:AF264948) (676 aa) fasta scores: E(): 0%2C80.0%25 id in 681 aa;gbkey=CDS;gene=betT;inference=similar to sequence:INSDC:AF264948;product=high-affinity choline transport protein;protein_id=CAL19832.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1315144	1315212	.	+	.	ID=id2635;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=betT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1315156	1316589	.	+	.	ID=id2636;Note=Pfam match to entry PF02028 BCCT%2C BCCT family transporter%2C score 909.00%2C E-value 1.3e-269;gbkey=misc_feature;gene=betT;inference=protein motif:PF02028
AL590842.1	EMBL	sequence_feature	1315255	1315323	.	+	.	ID=id2637;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=betT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1315384	1315452	.	+	.	ID=id2638;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=betT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1315534	1315602	.	+	.	ID=id2639;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=betT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1315687	1315755	.	+	.	ID=id2640;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=betT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1315798	1315866	.	+	.	ID=id2641;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=betT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1315900	1315968	.	+	.	ID=id2642;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=betT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1316026	1316094	.	+	.	ID=id2643;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=betT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1316032	1316061	.	+	.	ID=id2644;Note=PS01303 BCCT family of transporters signature.;gbkey=misc_feature;gene=betT;inference=protein motif:ProSite:PS01303
AL590842.1	EMBL	sequence_feature	1316128	1316187	.	+	.	ID=id2645;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=betT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1316278	1316346	.	+	.	ID=id2646;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=betT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1316434	1316502	.	+	.	ID=id2647;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=betT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1316512	1316571	.	+	.	ID=id2648;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=betT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1317355	1318248	.	+	.	ID=gene1169;Name=YPO1169;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1169
AL590842.1	EMBL	CDS	1317355	1318248	.	+	0	ID=cds1142;Parent=gene1169;Dbxref=GOA:Q74W91,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q74W91,NCBI_GP:CAL19833.1;Name=CAL19833.1;Note=Similar to many eg. Escherichia coli xanthosine operon regulatory protein WapR SW:XAPR_ECOLI (P23841) (294 aa) fasta scores: E(): 0%2C 38.3%25 id in 287 aa;gbkey=CDS;product=putative LysR-family regulatory protein;protein_id=CAL19833.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1317388	1317816	.	+	.	ID=id2649;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 123.40%2C E-value 4.3e-33;gbkey=misc_feature;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	1317427	1317492	.	+	.	ID=id2650;Note=Predicted helix-turn-helix motif with score 1460 (+4.16 SD) at aa 25-46%2C sequence LHFGKAAERLHISQPPLSLQIK;gbkey=misc_feature
AL590842.1	EMBL	sequence_feature	1317430	1317522	.	+	.	ID=id2651;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00044
AL590842.1	EMBL	gene	1318286	1319167	.	-	.	ID=gene1170;Name=YPO1170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1170
AL590842.1	EMBL	CDS	1318286	1319167	.	-	0	ID=cds1143;Parent=gene1170;Dbxref=GOA:Q74W92,InterPro:IPR000620,UniProtKB/TrEMBL:Q74W92,NCBI_GP:CAL19834.1;Name=CAL19834.1;Note=Weakly similar to Bacillus subtilis hypothetical 35.8 kDa protein in lplD-pel intergenic region SW:YETK_BACSU (O31540) (330 aa) fasta scores: E(): 8e-12%2C22.5%25 id in 298 aa%2C and to Erwinia chrysanthemi PecM protein pecM SW:PECM_ERWCH (P42194) (297 aa) fasta scores: E(): 0.00048%2C 20.9%25 id in 277 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL19834.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1318292	1318342	.	-	.	ID=id2652;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1318298	1318678	.	-	.	ID=id2653;Note=Pfam match to entry PF00892 DUF6%2C Integral membrane protein DUF6%2C score 41.70%2C E-value 1.6e-08;gbkey=misc_feature;inference=protein motif:PF00892
AL590842.1	EMBL	sequence_feature	1318358	1318423	.	-	.	ID=id2654;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1318463	1318528	.	-	.	ID=id2655;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1318559	1318624	.	-	.	ID=id2656;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1318652	1318717	.	-	.	ID=id2657;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1318748	1319119	.	-	.	ID=id2658;Note=Pfam match to entry PF00892 DUF6%2C Integral membrane protein DUF6%2C score 54.80%2C E-value 1.9e-12;gbkey=misc_feature;inference=protein motif:PF00892
AL590842.1	EMBL	sequence_feature	1318748	1318804	.	-	.	ID=id2659;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1318820	1318870	.	-	.	ID=id2660;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1318883	1318948	.	-	.	ID=id2661;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1318988	1319053	.	-	.	ID=id2662;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1319066	1319131	.	-	.	ID=id2663;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1319480	1320343	.	+	.	ID=gene1171;Name=pndA;gbkey=Gene;gene=pndA;gene_biotype=protein_coding;gene_synonym=xapA;locus_tag=YPO1171
AL590842.1	EMBL	CDS	1319480	1320343	.	+	0	ID=cds1144;Parent=gene1171;Dbxref=GOA:Q74W93,InterPro:IPR000845,InterPro:IPR001369,InterPro:IPR010943,InterPro:IPR011268,InterPro:IPR011270,UniProtKB/TrEMBL:Q74W93,NCBI_GP:CAL19835.1;Name=CAL19835.1;Note=Similar to Escherichia coli xanthosine phosphorylase XapA or PndA SW:XAPA_ECOLI (P45563) (277 aa) fasta scores: E(): 0%2C 70.2%25 id in 272 aa%2C and to Mus musculus purine nucleoside phosphorylase SW:PNPH_MOUSE (P23492) (289 aa) fasta scores: E(): 0%2C 42.6%25 id in 265 aa;gbkey=CDS;gene=pndA;product=xanthosine phosphorylase;protein_id=CAL19835.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1319585	1320220	.	+	.	ID=id2664;Note=Pfam match to entry PF00896 Mtap_PNP%2C phosphorylases family 2%2C score 362.50%2C E-value 4.6e-105;gbkey=misc_feature;gene=pndA;inference=protein motif:PF00896
AL590842.1	EMBL	pseudogene	1320482	1321126	.	+	.	ID=gene1172;Name=xapB';gbkey=Gene;gene=xapB';gene_biotype=pseudogene;locus_tag=YPO1172;pseudo=true
AL590842.1	EMBL	CDS	1320482	1321126	.	+	0	ID=cds1145;Parent=gene1172;Note=Gene interrupted by IS1541. Similar to Escherichia coli xanthosine permease XapB SW:XAPB_ECOLI (P45562) (418 aa) fasta scores: E(): 0%2C 62.5%25 id in 216 aa%2C and to Escherichia coli nucleoside permease NupG nupG SW:NUPG_ECOLI (P09452) (418 aa) fasta scores: E(): 0%2C 49.6%25 id in 248 aa;gbkey=CDS;gene=xapB';inference=protein motif:TMHMM:2.0;product=xanthosine permease (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	1320500	1320568	.	+	.	ID=id2665;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=xapB';inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1320596	1320664	.	+	.	ID=id2666;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=xapB';inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1320683	1320742	.	+	.	ID=id2667;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=xapB';inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1320770	1320838	.	+	.	ID=id2668;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=xapB';inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1320875	1320931	.	+	.	ID=id2669;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=xapB';inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1320959	1321027	.	+	.	ID=id2670;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=xapB';inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	repeat_region	1321127	1321838	.	+	.	ID=id2671;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	1321272	1321730	.	+	.	ID=gene1173;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO1173
AL590842.1	EMBL	CDS	1321272	1321730	.	+	0	ID=cds1146;Parent=gene1173;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL19837.1;Name=CAL19837.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Also identical to the Yersinia pseudotuberculosis IS1541-like elements transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL19837.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1321326	1321637	.	+	.	ID=id2672;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	1322145	1323074	.	+	.	ID=gene1174;Name=YPO1174;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1174
AL590842.1	EMBL	CDS	1322145	1323074	.	+	0	ID=cds1147;Parent=gene1174;Dbxref=InterPro:IPR025386,UniProtKB/TrEMBL:Q7CH73,NCBI_GP:CAL19838.1;Name=CAL19838.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19838.1;transl_table=11
AL590842.1	EMBL	gene	1323368	1324312	.	+	.	ID=gene1175;Name=YPO1175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1175
AL590842.1	EMBL	CDS	1323368	1324312	.	+	0	ID=cds1148;Parent=gene1175;Dbxref=GOA:Q8ZGV2,InterPro:IPR001269,InterPro:IPR013785,InterPro:IPR018517,NCBI_GP:CAL19839.1;Name=CAL19839.1;Note=Similar to many e.g. Escherichia coli hypothetical protein YohI SW:YOHI_ECOLI (P33371) (315 aa) fasta scores: E(): 0%2C 83.3%25 id in 311 aa%2C and to Vibrio cholerae hypothetical protein VC1105 TR:Q9KT00 (EMBL:AE004191) (323 aa) fasta scores: E(): 0%2C 58.9%25 id in 309 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004191;product=conserved hypothetical protein;protein_id=CAL19839.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1323383	1324297	.	+	.	ID=id2673;Note=Pfam match to entry PF01207 UPF0034%2C Uncharacterized protein family UPF0034%2C score 428.70%2C E-value 5.2e-125;gbkey=misc_feature;inference=protein motif:PF01207
AL590842.1	EMBL	sequence_feature	1323647	1323703	.	+	.	ID=id2674;Note=PS01136 Uncharacterized protein family UPF0034 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01136
AL590842.1	EMBL	gene	1324904	1325839	.	+	.	ID=gene1176;Name=pbpG;gbkey=Gene;gene=pbpG;gene_biotype=protein_coding;locus_tag=YPO1176
AL590842.1	EMBL	CDS	1324904	1325839	.	+	0	ID=cds1149;Parent=gene1176;Dbxref=GOA:Q7CH74,InterPro:IPR001967,InterPro:IPR012338,InterPro:IPR018044,UniProtKB/TrEMBL:Q7CH74,NCBI_GP:CAL19840.1;Name=CAL19840.1;Note=Similar to Escherichia coli penicillin-binding protein 7 precursor PBPG SW:PBP7_ECOLI (P33364) (313 aa) fasta scores: E(): 0%2C 73.5%25 id in 309 aa%2C and to Vibrio cholerae D-alanyl-d-alanine endopeptidase vca0870 TR:Q9KL77 (EMBL:AE004414) (316 aa) fasta scores: E(): 0%2C 61.1%25 id in 314 aa;gbkey=CDS;gene=pbpG;inference=similar to sequence:INSDC:AE004414;product=penicillin-binding protein 7 precursor;protein_id=CAL19840.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1324994	1325764	.	+	.	ID=id2675;Note=Pfam match to entry PF00768 Peptidase_S11%2CD-alanyl-D-alanine carboxypeptidase%2C score 380.50%2C E-value 1.7e-110;gbkey=misc_feature;gene=pbpG;inference=protein motif:PF00768
AL590842.1	EMBL	gene	1325960	1327675	.	-	.	ID=gene1177;Name=dld;gbkey=Gene;gene=dld;gene_biotype=protein_coding;locus_tag=YPO1177
AL590842.1	EMBL	CDS	1325960	1327675	.	-	0	ID=cds1150;Parent=gene1177;Dbxref=GOA:Q7CH75,InterPro:IPR006094,InterPro:IPR012256,InterPro:IPR015409,InterPro:IPR016164,InterPro:IPR016166,InterPro:IPR016167,InterPro:IPR016169,InterPro:IPR016172,InterPro:IPR016173,UniProtKB/TrEMBL:Q7CH75,NCBI_GP:CAL19841.1;Name=CAL19841.1;Note=Similar to Escherichia coli D-lactate dehydrogenase Dld SW:DLD_ECOLI (P06149) (570 aa) fasta scores: E(): 0%2C66.1%25 id in 558 aa%2C and to Neisseria meningitidis D-lactate dehydrogenase NMB0997 TR:Q9JZL7 (EMBL:AE002450) (563 aa) fasta scores: E(): 0%2C 60.9%25 id in 558 aa;gbkey=CDS;gene=dld;inference=similar to sequence:INSDC:AE002450;product=D-lactate dehydrogenase;protein_id=CAL19841.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1327031	1327633	.	-	.	ID=id2676;Note=Pfam match to entry PF01565 FAD_binding_4%2C FAD binding domain%2C score 104.80%2C E-value 1.7e-27;gbkey=misc_feature;gene=dld;inference=protein motif:PF01565
AL590842.1	EMBL	gene	1327882	1328421	.	+	.	ID=gene1178;Name=cyaB;gbkey=Gene;gene=cyaB;gene_biotype=protein_coding;locus_tag=YPO1178
AL590842.1	EMBL	CDS	1327882	1328421	.	+	0	ID=cds1151;Parent=gene1178;Dbxref=GOA:Q7CH76,InterPro:IPR008173,InterPro:IPR023577,PDB:2FJT,PDB:3N0Y,PDB:3N0Z,PDB:3N10,UniProtKB/TrEMBL:Q7CH76,NCBI_GP:CAL19842.1;Name=CAL19842.1;Note=Belongs to a family of thermophilic adenylate cyclases. Similar to Aeromonas hydrophila adenylate cyclase 2 CyaB TR:O69199 (EMBL:AJ223730) (190 aa) fasta scores: E(): 8.9e-33%2C 50.9%25 id in 175 aa;gbkey=CDS;gene=cyaB;inference=similar to sequence:INSDC:AJ223730;product=adenylate cyclase 2;protein_id=CAL19842.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1327912	1328418	.	+	.	ID=id2677;Note=Pfam match to entry PF01928 Adenylate_cyc_2%2CAdenylate cyclase%2C score 136.60%2C E-value 4.6e-37;gbkey=misc_feature;gene=cyaB;inference=protein motif:PF01928
AL590842.1	EMBL	gene	1328447	1328788	.	-	.	ID=gene1179;Name=YPO1179;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1179
AL590842.1	EMBL	CDS	1328447	1328788	.	-	0	ID=cds1152;Parent=gene1179;Dbxref=GOA:Q0WHM1,InterPro:IPR002711,InterPro:IPR003615,InterPro:IPR015880,UniProtKB/TrEMBL:Q0WHM1,NCBI_GP:CAL19843.1;Name=CAL19843.1;Note=Similar to Escherichia coli hypothetical protein YajD SW:YAJD_ECOLI (P19678) (109 aa) fasta scores: E(): 0%2C84.7%25 id in 98 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19843.1;transl_table=11
AL590842.1	EMBL	gene	1329101	1330204	.	+	.	ID=gene1180;Name=YPO1180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1180
AL590842.1	EMBL	CDS	1329101	1330204	.	+	0	ID=cds1153;Parent=gene1180;Dbxref=InterPro:IPR020941,UniProtKB/TrEMBL:Q7CH77,NCBI_GP:CAL19844.1;Name=CAL19844.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19844.1;transl_table=11
AL590842.1	EMBL	gene	1330314	1330637	.	+	.	ID=gene1181;Name=YPO1181;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1181
AL590842.1	EMBL	CDS	1330314	1330637	.	+	0	ID=cds1154;Parent=gene1181;Dbxref=GOA:Q74WC1,InterPro:IPR007341,UniProtKB/TrEMBL:Q74WC1,NCBI_GP:CAL19845.1;Name=CAL19845.1;Note=Similar to Escherichia coli hypothetical 8.7 kDa protein in gapA-rnd intergenic region YeaQ SW:YEAQ_ECOLI (P76246) (82 aa) fasta scores: E(): 1.8e-23%2C 82.9%25 id in 82 aa%2C and to Escherichia coli transglycosylase associated protein SW:TAG1_ECOLI (P76011) (84 aa) fasta scores: E(): 1.7e-16%2C 63.4%25 id in 82 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL19845.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1330362	1330430	.	+	.	ID=id2678;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1330473	1330541	.	+	.	ID=id2679;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1330560	1330619	.	+	.	ID=id2680;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1330845	1331681	.	+	.	ID=gene1182;Name=YPO1182;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1182
AL590842.1	EMBL	CDS	1330845	1331681	.	+	0	ID=cds1155;Parent=gene1182;Dbxref=GOA:Q8ZGU5,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR012693,InterPro:IPR017871,InterPro:IPR027417,NCBI_GP:CAL19846.1;Name=CAL19846.1;Note=Similar to Rhizobium meliloti phosphate transport protein PhoC TR:Q52906 (EMBL:U59229) (270 aa) fasta scores: E(): 0%2C 46.8%25 id in 252 aa%2C and to Escherichia coli phosphonates transport ATP-binding protein PhnC phnC SW:PHNC_ECOLI (P16677) (262 aa) fasta scores: E(): 3.7e-32%2C39.8%25 id in 251 aa;gbkey=CDS;inference=similar to sequence:INSDC:U59229;product=putative ABC transport ATP-binding subunit;protein_id=CAL19846.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1330995	1331591	.	+	.	ID=id2681;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 166.40%2C E-value 4.8e-46;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1331016	1331039	.	+	.	ID=id2682;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1331364	1331408	.	+	.	ID=id2683;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	1331718	1332647	.	+	.	ID=gene1183;Name=YPO1183;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1183
AL590842.1	EMBL	CDS	1331718	1332647	.	+	0	ID=cds1156;Parent=gene1183;Dbxref=GOA:Q7CH78,InterPro:IPR005770,InterPro:IPR017797,UniProtKB/TrEMBL:Q7CH78,NCBI_GP:CAL19847.1;Name=CAL19847.1;Note=Similar to Rhizobium meliloti phosphate-binding protein PhoD precursor phoD TR:Q52907 (EMBL:U59229) (301 aa) fasta scores: E(): 0%2C 39.8%25 id in 309 aa%2C and to Escherichia coli phosphonates-binding periplasmic protein precursor SW:PHND_ECOLI (P16682) (338 aa) fasta scores: E(): 2.5e-09%2C 30.0%25 id in 263 aa;gbkey=CDS;inference=similar to sequence:INSDC:U59229;product=putative substrate-binding periplasmic transport protein;protein_id=CAL19847.1;transl_table=11
AL590842.1	EMBL	gene	1332810	1333610	.	+	.	ID=gene1184;Name=YPO1184;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1184
AL590842.1	EMBL	CDS	1332810	1333610	.	+	0	ID=cds1157;Parent=gene1184;Dbxref=GOA:Q0WHL6,InterPro:IPR000515,InterPro:IPR005769,UniProtKB/TrEMBL:Q0WHL6,NCBI_GP:CAL19848.1;Name=CAL19848.1;Note=Similar to Pseudomonas stutzeri phosphite transporter PtxC TR:O69053 (EMBL:AF061070) (275 aa) fasta scores: E(): 4.5e-30%2C 43.7%25 id in 199 aa%2C and to Rhizobium meliloti phosphate transporter PhoE TR:Q52908 (EMBL:U59229) (320 aa) fasta scores: E(): 2.2e-27%2C 36.9%25 id in 260 aa%2Cand to Escherichia coli phosphonates transport system permease protein SW:PHNE_ECOLI (P16683) (276 aa) fasta scores: E(): 4e-26%2C 40.2%25 id in 189 aa;gbkey=CDS;inference=similar to sequence:INSDC:U59229;product=putative ABC transport membrane permease;protein_id=CAL19848.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1332828	1332896	.	+	.	ID=id2684;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1333035	1333103	.	+	.	ID=id2685;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1333179	1333247	.	+	.	ID=id2686;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1333287	1333499	.	+	.	ID=id2687;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 22.40%2C E-value 0.011;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	1333509	1333562	.	+	.	ID=id2688;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1333607	1334494	.	+	.	ID=gene1185;Name=YPO1185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1185
AL590842.1	EMBL	CDS	1333607	1334494	.	+	0	ID=cds1158;Parent=gene1185;Dbxref=GOA:Q7CH79,InterPro:IPR000515,InterPro:IPR005769,UniProtKB/TrEMBL:Q7CH79,NCBI_GP:CAL19849.1;Name=CAL19849.1;Note=Similar to Rhizobium meliloti phosphate transporter PhoT TR:Q52909 (EMBL:U59229) (505 aa) fasta scores: E(): 1.8e-30%2C 40.3%25 id in 243 aa%2C and to Bacillus halodurans alkylphosphonate ABC tranporter PhnE TR:Q9K8M9 (EMBL:AP001517) (266 aa) fasta scores: E(): 2.1e-28%2C 35.3%25 id in 275 aa%2C and to Escherichia coli phosphonates transport system permease protein SW:PHNE_ECOLI (P16683) (276 aa) fasta scores: E(): 4.3e-25%2C 34.3%25 id in 251 aa;gbkey=CDS;inference=similar to sequence:INSDC:U59229;product=putative ABC transport membrane permease;protein_id=CAL19849.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1333703	1333771	.	+	.	ID=id2689;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1333877	1333945	.	+	.	ID=id2690;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1334045	1334113	.	+	.	ID=id2691;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1334150	1334362	.	+	.	ID=id2692;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 14.00%2C E-value 0.12;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	1334225	1334278	.	+	.	ID=id2693;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1334297	1334350	.	+	.	ID=id2694;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1334378	1334446	.	+	.	ID=id2695;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1334740	1335213	.	+	.	ID=gene1186;Name=YPO1186;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1186
AL590842.1	EMBL	CDS	1334740	1335213	.	+	0	ID=cds1159;Parent=gene1186;Dbxref=InterPro:IPR009921,UniProtKB/TrEMBL:Q7CH80,NCBI_GP:CAL19850.1;Name=CAL19850.1;Note=Similar to Escherichia coli O157:H7 hypothetical protein YehS TR:BAB19553 (EMBL:AP000400) (156 aa) fasta scores: E(): 3.1e-29%2C 50.7%25 id in 150 aa%2C and to Escherichia coli hypothetical protein YehS SW:YEHS_ECOLI (P33355) (156 aa) fasta scores: E(): 3.1e-29%2C 50.7%25 id in 150 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP000400;product=conserved hypothetical protein;protein_id=CAL19850.1;transl_table=11
AL590842.1	EMBL	gene	1335648	1336916	.	+	.	ID=gene1187;Name=YPO1187;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1187
AL590842.1	EMBL	CDS	1335648	1336916	.	+	0	ID=cds1160;Parent=gene1187;Dbxref=GOA:Q0WHL3,InterPro:IPR000709,InterPro:IPR017777,InterPro:IPR028082,UniProtKB/TrEMBL:Q0WHL3,NCBI_GP:CAL19851.1;Name=CAL19851.1;Note=Similar to Bacillus halodurans ABC transporter BH0251 TR:Q9KG62 (EMBL:AP001507) (419 aa) fasta scores: E(): 0%2C 52.6%25 id in 378 aa%2C and to Pseudomonas aeruginosa aliphatic amidase expression-regulating protein Amic or PA3364 SW:AMIC_PSEAE (P27017) (384 aa) fasta scores: E(): 2.3e-24%2C 28.6%25 id in 371 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001507;product=putative substrate-binding periplasmic transport protein;protein_id=CAL19851.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1335672	1335740	.	+	.	ID=id2696;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1337040	1338641	.	+	.	ID=gene1188;Name=YPO1188;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1188
AL590842.1	EMBL	CDS	1337040	1338641	.	+	0	ID=cds1161;Parent=gene1188;Dbxref=GOA:Q0WHL2,InterPro:IPR001851,InterPro:IPR011989,InterPro:IPR016024,InterPro:IPR017779,UniProtKB/TrEMBL:Q0WHL2,NCBI_GP:CAL19852.1;Name=CAL19852.1;Note=C-terminal region similar to many transport permeases eg. Synechocystis sp high-affinity branched-chain amino acid transport protein LivhH or SLR1200 TR:P73350 (EMBL:D90905) (388 aa) fasta scores: E(): 2.2e-21%2C 41.2%25 id in 381 aa%2C and to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport system permease protein BraD or PA1073 SW:BRAD_PSEAE (P21627) (307 aa) fasta scores: E(): 1.3e-18%2C 28.9%25 id in 298 aa%2C and to Escherichia coli high-affinity branched-chain amino acid transport system permease protein LivH SW:LIVH_ECOLI (P08340) (308 aa) fasta scores: E(): 5e-17%2C 27.1%25 id in 295 aa. N-terminal region has no significant database similarities.;gbkey=CDS;inference=similar to sequence:INSDC:D90905;product=putative Branched-chain amino acid transport system%2C permease component;protein_id=CAL19852.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1337076	1337144	.	+	.	ID=id2697;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1337775	1337843	.	+	.	ID=id2698;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1337862	1337921	.	+	.	ID=id2699;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1337931	1337999	.	+	.	ID=id2700;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1338036	1338104	.	+	.	ID=id2701;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1338174	1338242	.	+	.	ID=id2702;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1338441	1338509	.	+	.	ID=id2703;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1338522	1338590	.	+	.	ID=id2704;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1338641	1339717	.	+	.	ID=gene1189;Name=YPO1189;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1189
AL590842.1	EMBL	CDS	1338641	1339717	.	+	0	ID=cds1162;Parent=gene1189;Dbxref=GOA:Q74WC9,InterPro:IPR001851,InterPro:IPR017778,UniProtKB/TrEMBL:Q74WC9,NCBI_GP:CAL19853.1;Name=CAL19853.1;Note=Similar to many proposed transport permeases eg. Bacillus halodurans ABC transporter bh0249 TR:Q9KG64 (EMBL:AP001507) (367 aa) fasta scores: E(): 0%2C 43.3%25 id in 351 aa%2C and to Deinococcus radiodurans urea/short chain-amide ABC transporter%2C permease protein dra0322 TR:Q9RYJ0 (EMBL:AE001863) (358 aa) fasta scores: E(): 0%2C44.1%25 id in 333 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001507;product=putative Branched-chain amino acid transport system%2C permease component;protein_id=CAL19853.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1338689	1338757	.	+	.	ID=id2705;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1338770	1338838	.	+	.	ID=id2706;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1338857	1338925	.	+	.	ID=id2707;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1339016	1339084	.	+	.	ID=id2708;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1339103	1339162	.	+	.	ID=id2709;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1339172	1339231	.	+	.	ID=id2710;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1339250	1339318	.	+	.	ID=id2711;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1339409	1339477	.	+	.	ID=id2712;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1339514	1339582	.	+	.	ID=id2713;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1339625	1339693	.	+	.	ID=id2714;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1339714	1340550	.	+	.	ID=gene1190;Name=YPO1190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1190
AL590842.1	EMBL	CDS	1339714	1340550	.	+	0	ID=cds1163;Parent=gene1190;Dbxref=GOA:Q7CH81,InterPro:IPR003439,InterPro:IPR017781,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CH81,NCBI_GP:CAL19854.1;Name=CAL19854.1;Note=Similar to Bacillus halodurans ABC transporter BH0248 TR:Q9KG65 (EMBL:AP001507) (267 aa) fasta scores: E(): 0%2C 49.4%25 id in 255 aa%2C and to Escherichia coli high-affinity branched-chain amino acid transport ATP-binding protein LivG SW:LIVG_ECOLI (P22730) (255 aa) fasta scores: E(): 4.4e-23%2C 36.5%25 id in 252 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001507;product=putative ABC transport ATP-binding subunit;protein_id=CAL19854.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1339900	1340475	.	+	.	ID=id2715;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 155.90%2C E-value 6.8e-43;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1339921	1339944	.	+	.	ID=id2716;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1340644	1341342	.	+	.	ID=gene1191;Name=YPO1191;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1191
AL590842.1	EMBL	CDS	1340644	1341342	.	+	0	ID=cds1164;Parent=gene1191;Dbxref=GOA:Q0WHK9,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017780,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WHK9,NCBI_GP:CAL19855.1;Name=CAL19855.1;Note=Similar to Bacillus halodurans ABC transporter BH0247 TR:Q9KG66 (EMBL:AP001507) (230 aa) fasta scores: E(): 0%2C 51.2%25 id in 217 aa%2C and to Streptomyces coelicolor putative branched chain amino acid transport ATP-binding protein SC7H2.26 TR:Q9S2J1 (EMBL:AL109732) (238 aa) fasta scores: E(): 1.5e-30%2C 44.4%25 id in 232 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001507;product=putative ABC transport ATP-binding subunit;protein_id=CAL19855.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1340722	1341273	.	+	.	ID=id2717;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 167.20%2C E-value 2.7e-46;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1340743	1340766	.	+	.	ID=id2718;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1341457	1342314	.	+	.	ID=gene1192;Name=YPO1192;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1192
AL590842.1	EMBL	CDS	1341457	1342314	.	+	0	ID=cds1165;Parent=gene1192;Dbxref=InterPro:IPR016946,UniProtKB/TrEMBL:Q7CH82,NCBI_GP:CAL19856.1;Name=CAL19856.1;Note=Weakly similar to others of unknown function Bacillus halodurans BH2933 protein BH2933 TR:Q9K8S0 (EMBL:AP001517) (269 aa) fasta scores: E(): 2e-09%2C 26.8%25 id in 284 aa%2C and to Nostoc sp. GSV224 hypothetical protein TR:Q9RAH0 (EMBL:AF204805) (265 aa) fasta scores: E(): 0.12%2C22.3%25 id in 292 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001517;product=conserved hypothetical protein;protein_id=CAL19856.1;transl_table=11
AL590842.1	EMBL	gene	1342338	1343753	.	+	.	ID=gene1193;Name=YPO1193;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1193
AL590842.1	EMBL	CDS	1342338	1343753	.	+	0	ID=cds1166;Parent=gene1193;Dbxref=GOA:Q7CH83,InterPro:IPR002129,InterPro:IPR010977,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q7CH83,NCBI_GP:CAL19857.1;Name=CAL19857.1;Note=Similar to many decarboxylases eg. Catharanthus roseus aromatic-L-amino-acid decarboxylase Tdc SW:DCD_CATRO (P17770) (500 aa) fasta scores: E(): 0%2C 38.0%25 id in 481 aa%2Cand to Arabidopsis thaliana putative tyrosine decarboxylase AT2G20340 TR:Q9SK68 (EMBL:AC006569) (479 aa) fasta scores: E(): 0%2C 38.7%25 id in 475 aa%2C and to Sorangium cellulosum aromatic amino acid decarboxylase Ddc TR:Q9L402 (EMBL:AJ270937) (512 aa) fasta scores: E(): 0%2C 40.0%25 id in 480 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ270937;product=putative pyridoxal-dependent decarboxylase;protein_id=CAL19857.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1342440	1343549	.	+	.	ID=id2719;Note=Pfam match to entry PF00282 pyridoxal_deC%2CPyridoxal-dependent decarboxylase conserved domain%2C score 395.60%2C E-value 5e-115;gbkey=misc_feature;inference=protein motif:PF00282
AL590842.1	EMBL	sequence_feature	1342743	1342769	.	+	.	ID=id2720;Note=PS00123 Alkaline phosphatase active site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00123
AL590842.1	EMBL	gene	1343908	1344762	.	-	.	ID=gene1194;Name=YPO1194;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1194
AL590842.1	EMBL	CDS	1343908	1344762	.	-	0	ID=cds1167;Parent=gene1194;Dbxref=GOA:Q7CH84,InterPro:IPR001307,InterPro:IPR001763,UniProtKB/TrEMBL:Q7CH84,NCBI_GP:CAL19858.1;Name=CAL19858.1;Note=Similar to many eg. Escherichia coli putative thiosulfate sulfurtransferase SseA SW:THTR_ECOLI (P31142) (280 aa) fasta scores: E(): 0%2C 50.4%25 id in 278 aa%2C and to Homo sapiens 3-mercaptopyruvate sulfurtransferase MpsT or Tst2 SW:THTM_HUMAN (P25325) (296 aa) fasta scores: E(): 0%2C40.4%25 id in 272 aa;gbkey=CDS;product=putative sulfurtransferase;protein_id=CAL19858.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1343944	1344294	.	-	.	ID=id2721;Note=Pfam match to entry PF00581 Rhodanese%2CRhodanese-like domain%2C score 73.00%2C E-value 6.1e-18;gbkey=misc_feature;inference=protein motif:PF00581
AL590842.1	EMBL	sequence_feature	1343953	1343985	.	-	.	ID=id2722;Note=PS00683 Rhodanese C-terminal signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00683
AL590842.1	EMBL	sequence_feature	1344373	1344741	.	-	.	ID=id2723;Note=Pfam match to entry PF00581 Rhodanese%2CRhodanese-like domain%2C score 96.90%2C E-value 4e-25;gbkey=misc_feature;inference=protein motif:PF00581
AL590842.1	EMBL	sequence_feature	1344601	1344636	.	-	.	ID=id2724;Note=PS00380 Rhodanese signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS00380
AL590842.1	EMBL	pseudogene	1345498	1346430	.	+	.	ID=gene1195;Name=YPO1195;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO1195;pseudo=true
AL590842.1	EMBL	CDS	1345498	1346430	.	+	0	ID=cds1168;Parent=gene1195;Note=Similar to Escherichia coli hypothetical 32.6 kDa protein in molR-bglX intergenic region precursor YehZ SW:YEHZ_ECOLI (P33362) (305 aa) fasta scores: E(): 0%2C 70.8%25 id in 301 aa%2C and to Escherichia coli O157:H7 putative transport system permease protein YehZ TR:AAG57263 (EMBL:AE005444) (305 aa) fasta scores: E(): 0%2C 70.5%25 id in 302 aa%2C and to Bacillus subtilis glycine betaine/carnitine/choline-binding protein precursor OpuCC SW:OPCC_BACSU (O32243) (303 aa) fasta scores: E(): 1.5e-11%2C26.1%25 id in 303 aa. There is a stop codon at position 156. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=similar to sequence:INSDC:AE005444;product=putative substrate-binding transport protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	1346691	1347845	.	+	.	ID=gene1196;Name=YPO1197;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1197
AL590842.1	EMBL	CDS	1346691	1347845	.	+	0	ID=cds1169;Parent=gene1196;Dbxref=GOA:Q7CH85,InterPro:IPR000515,InterPro:IPR001991,UniProtKB/TrEMBL:Q7CH85,NCBI_GP:CAL19860.1;Name=CAL19860.1;Note=Similar to Escherichia coli hypothetical ABC transporter permease protein YehY SW:YEHY_ECOLI (P33361) (385 aa) fasta scores: E(): 0%2C 52.0%25 id in 377 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative ABC transport integral membrane subunit;protein_id=CAL19860.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1346709	1346765	.	+	.	ID=id2725;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1346808	1346876	.	+	.	ID=id2726;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1346895	1346963	.	+	.	ID=id2727;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1347006	1347074	.	+	.	ID=id2728;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1347093	1347161	.	+	.	ID=id2729;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1347231	1347299	.	+	.	ID=id2730;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1347336	1347404	.	+	.	ID=id2731;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1347432	1347500	.	+	.	ID=id2732;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1347519	1347731	.	+	.	ID=id2733;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 59.30%2C E-value 8e-14;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	1347522	1347608	.	+	.	ID=id2734;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	1347660	1347728	.	+	.	ID=id2735;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1347756	1347824	.	+	.	ID=id2736;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1347842	1348780	.	+	.	ID=gene1197;Name=YPO1198;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1198
AL590842.1	EMBL	CDS	1347842	1348780	.	+	0	ID=cds1170;Parent=gene1197;Dbxref=GOA:Q7CH86,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CH86,NCBI_GP:CAL19861.1;Name=CAL19861.1;Note=Similar to Escherichia coli hypothetical ABC transporter ATP-binding protein YehX yehX SW:YEHX_ECOLI (P33360) (308 aa) fasta scores: E(): 0%2C 66.7%25 id in 306 aa%2Cand to Bacillus subtilis glycine betaine/carnitine/choline transport ATP-binding protein OpucA SW:OPCA_BACSU (O34992) (380 aa) fasta scores: E(): 0%2C 49.5%25 id in 295 aa;gbkey=CDS;product=putative ABC transport ATP-binding subunit;protein_id=CAL19861.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1347920	1348477	.	+	.	ID=id2737;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 226.80%2C E-value 3.2e-64;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1347941	1347964	.	+	.	ID=id2738;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1348247	1348291	.	+	.	ID=id2739;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	1348777	1349613	.	+	.	ID=gene1198;Name=YPO1199;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1199
AL590842.1	EMBL	CDS	1348777	1349613	.	+	0	ID=cds1171;Parent=gene1198;Dbxref=GOA:Q7CH87,InterPro:IPR000515,UniProtKB/TrEMBL:Q7CH87,NCBI_GP:CAL19862.1;Name=CAL19862.1;Note=Similar to Escherichia coli hypothetical ABC transporter permease protein YehW SW:YEHW_ECOLI (P33359) (243 aa) fasta scores: E(): 0%2C 62.9%25 id in 237 aa%2C and to Bacillus subtilis choline transport system permease protein SW:OPBB_BACSU (Q45461) (217 aa) fasta scores: E(): 1e-21%2C40.1%25 id in 187 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative ABC transport integral membrane subunit;protein_id=CAL19862.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1348873	1348941	.	+	.	ID=id2740;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1348999	1349067	.	+	.	ID=id2741;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1349104	1349172	.	+	.	ID=id2742;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1349200	1349268	.	+	.	ID=id2743;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1349257	1349487	.	+	.	ID=id2744;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 75.20%2C E-value 1.3e-18;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	1349260	1349346	.	+	.	ID=id2745;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	1349326	1349394	.	+	.	ID=id2746;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1349452	1349520	.	+	.	ID=id2747;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1350091	1351425	.	+	.	ID=gene1199;Name=YPO1200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1200
AL590842.1	EMBL	CDS	1350091	1351425	.	+	0	ID=cds1172;Parent=gene1199;Dbxref=GOA:Q8ZGS9,InterPro:IPR002293,NCBI_GP:CAL19863.1;Name=CAL19863.1;Note=Similar to Escherichia coli hypothetical 46.8 kDa protein in basS-adiY intergenic region YjdE SW:YJDE_ECOLI (P39269) (445 aa) fasta scores: E(): 0%2C 87.6%25 id in 437 aa%2Cand to Escherichia coli probable cadaverine/lysine antiporter CadB SW:CADB_ECOLI (P23891) (444 aa) fasta scores: E(): 0%2C 39.6%25 id in 424 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative amino acid permease;protein_id=CAL19863.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1350109	1350177	.	+	.	ID=id2748;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1350127	1351383	.	+	.	ID=id2749;Note=Pfam match to entry PF00324 aa_permeases%2C Amino acid permease%2C score -181.20%2C E-value 6.3e-06;gbkey=misc_feature;inference=protein motif:PF00324
AL590842.1	EMBL	sequence_feature	1350205	1350264	.	+	.	ID=id2750;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1350352	1350420	.	+	.	ID=id2751;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1350448	1350516	.	+	.	ID=id2752;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1350535	1350603	.	+	.	ID=id2753;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1350661	1350729	.	+	.	ID=id2754;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1350766	1350834	.	+	.	ID=id2755;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1350904	1350972	.	+	.	ID=id2756;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1351042	1351110	.	+	.	ID=id2757;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1351138	1351206	.	+	.	ID=id2758;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1351243	1351296	.	+	.	ID=id2759;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1351309	1351368	.	+	.	ID=id2760;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1351495	1353801	.	+	.	ID=gene1200;Name=YPO1201;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1201
AL590842.1	EMBL	CDS	1351495	1353801	.	+	0	ID=cds1173;Parent=gene1200;Dbxref=GOA:Q7CH88,InterPro:IPR000310,InterPro:IPR005308,InterPro:IPR008286,InterPro:IPR011193,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q7CH88,NCBI_GP:CAL19864.1;Name=CAL19864.1;Note=Similar to Escherichia coli biodegradative arginine decarboxylase AdiA or Adi SW:ADIA_ECOLI (P28629) (755 aa) fasta scores: E(): 0%2C 52.4%25 id in 757 aa%2C and to Vibrio cholerae ornithine decarboxylase%2C inducible VCA1063 TR:Q9KKN9 (EMBL:AE004431) (720 aa) fasta scores: E(): 0%2C34.0%25 id in 633 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004431;product=putative amino acid decarboxylase;protein_id=CAL19864.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1351936	1353786	.	+	.	ID=id2761;Note=Pfam match to entry PF01276 OKR_DC_1%2C Orn/Lys/Arg decarboxylase%2C score 835.90%2C E-value 1.4e-247;gbkey=misc_feature;inference=protein motif:PF01276
AL590842.1	EMBL	sequence_feature	1352674	1352718	.	+	.	ID=id2762;Note=PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00703
AL590842.1	EMBL	gene	1354247	1355137	.	-	.	ID=gene1201;Name=YPO1203;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1203
AL590842.1	EMBL	CDS	1354247	1355137	.	-	0	ID=cds1174;Parent=gene1201;Dbxref=GOA:Q7CH89,InterPro:IPR000620,UniProtKB/TrEMBL:Q7CH89,NCBI_GP:CAL19865.1;Name=CAL19865.1;Note=Similar to Escherichia coli hypothetical 32.2 kDa protein in dsrA-vsr intergenic region yedA SW:YEDA_ECOLI (P09185) (306 aa) fasta scores: E(): 0%2C 67.6%25 id in 287 aa%2Cand to Pseudomonas aeruginosa hypothetical protein PA4783 TR:AAG08169 (EMBL:AE004891) (296 aa) fasta scores: E(): 0%2C63.4%25 id in 290 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004891;product=putative membrane protein;protein_id=CAL19865.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1354256	1354312	.	-	.	ID=id2763;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1354274	1354651	.	-	.	ID=id2764;Note=Pfam match to entry PF00892 DUF6%2C Integral membrane protein DUF6%2C score 74.90%2C E-value 1.7e-18;gbkey=misc_feature;inference=protein motif:PF00892
AL590842.1	EMBL	sequence_feature	1354343	1354408	.	-	.	ID=id2765;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1354430	1354495	.	-	.	ID=id2766;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1354541	1354606	.	-	.	ID=id2767;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1354622	1354678	.	-	.	ID=id2768;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1354691	1354756	.	-	.	ID=id2769;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1354706	1355077	.	-	.	ID=id2770;Note=Pfam match to entry PF00892 DUF6%2C Integral membrane protein DUF6%2C score 96.80%2C E-value 4.3e-25;gbkey=misc_feature;inference=protein motif:PF00892
AL590842.1	EMBL	sequence_feature	1354778	1354834	.	-	.	ID=id2771;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1354865	1354921	.	-	.	ID=id2772;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1354943	1355008	.	-	.	ID=id2773;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1355054	1355110	.	-	.	ID=id2774;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1355549	1356664	.	-	.	ID=gene1202;Name=ompC2;gbkey=Gene;gene=ompC2;gene_biotype=protein_coding;locus_tag=YPO1205
AL590842.1	EMBL	CDS	1355549	1356664	.	-	0	ID=cds1175;Parent=gene1202;Dbxref=GOA:Q74WE1,InterPro:IPR001702,InterPro:IPR001897,InterPro:IPR013793,InterPro:IPR023614,UniProtKB/TrEMBL:Q74WE1,NCBI_GP:CAL19866.1;Name=CAL19866.1;Note=Similar to Salmonella typhi outer membrane protein C precursor OmpC SW:OMPC_SALTI (P09878) (378 aa) fasta scores: E(): 0%2C 60.4%25 id in 384 aa%2C and to Escherichia coli outer membrane protein C precursor OmpC or MeoA or Par SW:OMPC_ECOLI (P06996) (367 aa) fasta scores: E(): 0%2C 58.9%25 id in 384 aa;gbkey=CDS;gene=ompC2;product=outer membrane protein C2;protein_id=CAL19866.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1355552	1356586	.	-	.	ID=id2775;Note=Pfam match to entry PF00267 Gram-ve_porins%2C General diffusion Gram-negative porins%2C score 678.60%2C E-value 1.9e-228;gbkey=misc_feature;gene=ompC2;inference=protein motif:PF00267
AL590842.1	EMBL	sequence_feature	1355639	1355689	.	-	.	ID=id2776;Note=PS00576 General diffusion Gram-negative porins signature.;gbkey=misc_feature;gene=ompC2;inference=protein motif:ProSite:PS00576
AL590842.1	EMBL	gene	1356934	1359114	.	+	.	ID=gene1203;Name=dinG;gbkey=Gene;gene=dinG;gene_biotype=protein_coding;gene_synonym=rarB;locus_tag=YPO1206
AL590842.1	EMBL	CDS	1356934	1359114	.	+	0	ID=cds1176;Parent=gene1203;Dbxref=GOA:Q7CH90,InterPro:IPR006555,InterPro:IPR010614,InterPro:IPR011545,InterPro:IPR014001,InterPro:IPR014013,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CH90,NCBI_GP:CAL19867.1;Name=CAL19867.1;Note=Similar to Escherichia coli probable ATP-dependent helicase DinG or RarB SW:DING_ECOLI (P27296) (716 aa) fasta scores: E(): 0%2C 70.0%25 id in 717 aa%2C and to Vibrio cholerae ATP-dependent helicase%2C DinG family VC1855 TR:Q9KQZ2 (EMBL:AE004261) (703 aa) fasta scores: E(): 0%2C 35.3%25 id in 708 aa;gbkey=CDS;gene=dinG;inference=similar to sequence:INSDC:AE004261;product=putative ATP-dependent helicase DinG;protein_id=CAL19867.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1357093	1357116	.	+	.	ID=id2777;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=dinG;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1359182	1360624	.	-	.	ID=gene1204;Name=katA;gbkey=Gene;gene=katA;gene_biotype=protein_coding;locus_tag=YPO1207
AL590842.1	EMBL	CDS	1359182	1360624	.	-	0	ID=cds1177;Parent=gene1204;Dbxref=GOA:Q7CH91,InterPro:IPR010582,InterPro:IPR011614,InterPro:IPR018028,InterPro:IPR020835,InterPro:IPR024708,InterPro:IPR024711,UniProtKB/TrEMBL:Q7CH91,NCBI_GP:CAL19868.1;Name=CAL19868.1;Note=Similar to many eg. Proteus mirabilis catalase KatA SW:CATA_PROMI (P42321) (484 aa) fasta scores: E(): 0%2C 84.9%25 id in 476 aa%2C and to Pseudomonas aeruginosa catalase KatA or PA4236 SW:CATA_PSEAE (O52762) (482 aa) fasta scores: E(): 0%2C 80.4%25 id in 479 aa;gbkey=CDS;gene=katA;product=catalase;protein_id=CAL19868.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1359191	1360600	.	-	.	ID=id2778;Note=Pfam match to entry PF00199 catalase%2C Catalase%2Cscore 1110.40%2C E-value 0;gbkey=misc_feature;gene=katA;inference=protein motif:PF00199
AL590842.1	EMBL	sequence_feature	1360442	1360492	.	-	.	ID=id2779;Note=PS00438 Catalase proximal active site signature.;gbkey=misc_feature;gene=katA;inference=protein motif:ProSite:PS00438
AL590842.1	EMBL	gene	1360997	1361524	.	+	.	ID=gene1205;Name=YPO1208;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1208
AL590842.1	EMBL	CDS	1360997	1361524	.	+	0	ID=cds1178;Parent=gene1205;Dbxref=GOA:Q0WHJ6,InterPro:IPR009998,InterPro:IPR011250,InterPro:IPR023614,UniProtKB/TrEMBL:Q0WHJ6,NCBI_GP:CAL19869.1;Name=CAL19869.1;Note=Similar to Escherichia coli hypothetical 18.6 kDa protein in glpC-ais intergenic region precursor YfaZ SW:YFAZ_ECOLI (P76471) (180 aa) fasta scores: E(): 0%2C 51.4%25 id in 175 aa%2C and to Proteus mirabilis hypothetical 11.1 kDa protein TR:Q9K374 (EMBL:AJ400965) (110 aa) fasta scores: E(): 1.4e-14%2C 48.5%25 id in 99 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ400965;product=putative exported protein;protein_id=CAL19869.1;transl_table=11
AL590842.1	EMBL	gene	1361781	1362989	.	-	.	ID=gene1206;Name=tyrP;gbkey=Gene;gene=tyrP;gene_biotype=protein_coding;locus_tag=YPO1209
AL590842.1	EMBL	CDS	1361781	1362989	.	-	0	ID=cds1179;Parent=gene1206;Dbxref=GOA:Q7CH92,InterPro:IPR002091,InterPro:IPR013059,InterPro:IPR013061,InterPro:IPR018227,UniProtKB/TrEMBL:Q7CH92,NCBI_GP:CAL19870.1;Name=CAL19870.1;Note=Similar to Escherichia coli tyrosine-specific transport protein TyrP SW:TYRP_ECOLI (P18199) (403 aa) fasta scores: E(): 0%2C 78.9%25 id in 403 aa%2C and to Vibrio cholerae tyrosine-specific transport protein VCA0772 TR:Q9KLH2 (EMBL:AE004405) (400 aa) fasta scores: E(): 0%2C47.5%25 id in 402 aa%2C and to Escherichia coli tryptophan-specific transport protein Mtr SW:MTR_ECOLI (P22306) (414 aa) fasta scores: E(): 0%2C 33.8%25 id in 399 aa;gbkey=CDS;gene=tyrP;inference=similar to sequence:INSDC:AE004405;product=tyrosine-specific transport protein;protein_id=CAL19870.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1361796	1361861	.	-	.	ID=id2780;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=tyrP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1361925	1361990	.	-	.	ID=id2781;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=tyrP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1362003	1362068	.	-	.	ID=id2782;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=tyrP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1362105	1362170	.	-	.	ID=id2783;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=tyrP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1362285	1362341	.	-	.	ID=id2784;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=tyrP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1362381	1362446	.	-	.	ID=id2785;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=tyrP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1362492	1362557	.	-	.	ID=id2786;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=tyrP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1362579	1362635	.	-	.	ID=id2787;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=tyrP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1362681	1362746	.	-	.	ID=id2788;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=tyrP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1362825	1362890	.	-	.	ID=id2789;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=tyrP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1362891	1362941	.	-	.	ID=id2790;Note=PS00594 Aromatic amino acids permeases signature.;gbkey=misc_feature;gene=tyrP;inference=protein motif:ProSite:PS00594
AL590842.1	EMBL	sequence_feature	1362903	1362968	.	-	.	ID=id2791;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=tyrP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1363608	1364801	.	+	.	ID=gene1207;Name=YPO1210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1210
AL590842.1	EMBL	CDS	1363608	1364801	.	+	0	ID=cds1180;Parent=gene1207;Dbxref=GOA:Q7CH93,InterPro:IPR001453,InterPro:IPR008135,InterPro:IPR020817,UniProtKB/TrEMBL:Q7CH93,NCBI_GP:CAL19871.1;Name=CAL19871.1;Note=Similar to Escherichia coli CinA-like protein CinA SW:CINA_ECOLI (P77808) (400 aa) fasta scores: E(): 0%2C 59.7%25 id in 395 aa%2C and to Vibrio cholerae competence damage protein CinA%2C putative VC1252 TR:Q9KSK4 (EMBL:AE004204) (415 aa) fasta scores: E(): 0%2C 43.5%25 id in 395 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004204;product=conserved hypothetical protein;protein_id=CAL19871.1;transl_table=11
AL590842.1	EMBL	gene	1364859	1365368	.	-	.	ID=gene1208;Name=eco;gbkey=Gene;gene=eco;gene_biotype=protein_coding;gene_synonym=eti;locus_tag=YPO1211
AL590842.1	EMBL	CDS	1364859	1365368	.	-	0	ID=cds1181;Parent=gene1208;Dbxref=GOA:Q8ZGS0,InterPro:IPR005658,InterPro:IPR023084,InterPro:IPR023189,InterPro:IPR027438,NCBI_GP:CAL19872.1;Name=CAL19872.1;Note=Similar to Escherichia coli ecotin precursor Eco or Eti SW:ECOT_ECOLI (P23827) (162 aa) fasta scores: E(): 0%2C63.2%25 id in 163 aa%2C and to Escherichia coli O157:H7 Ecotin%2Ca serine protease inhibitor Eco TR:AAG57344 (EMBL:AE005453) (162 aa) fasta scores: E(): 0%2C 62.6%25 id in 163 aa%2C and to Leishmania major possible ecotin precursor LM15.534 TR:Q9NMX0 (EMBL:AL160371) (154 aa) fasta scores: E(): 1.1e-13%2C 38.4%25 id in 125 aa;gbkey=CDS;gene=eco;inference=similar to sequence:INSDC:AL160371;product=putative ecotin precursor;protein_id=CAL19872.1;transl_table=11
AL590842.1	EMBL	gene	1365403	1365660	.	-	.	ID=gene1209;Name=YPO1212;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1212
AL590842.1	EMBL	CDS	1365403	1365660	.	-	0	ID=cds1182;Parent=gene1209;Dbxref=GOA:Q7CH94,InterPro:IPR001041,InterPro:IPR006058,InterPro:IPR012675,UniProtKB/TrEMBL:Q7CH94,NCBI_GP:CAL19873.1;Name=CAL19873.1;Note=Similar to Escherichia coli hypothetical protein YfaE SW:YFAE_ECOLI (P37910) (84 aa) fasta scores: E(): 5.6e-17%2C 62.2%25 id in 82 aa%2C and to Neisseria meningitidis (serogroup A)%2C and putative iron-sulphur binding protein NMA1497 TR:Q9JQU8 (EMBL:AL162756) (96 aa) fasta scores: E(): 4.2e-11%2C 56.5%25 id in 62 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL162756;product=putative iron-sulphur binding protein;protein_id=CAL19873.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1365424	1365648	.	-	.	ID=id2792;Note=Pfam match to entry PF00111 fer2%2C 2Fe-2S iron-sulfur cluster binding domains%2C score 38.50%2C E-value 1.5e-07;gbkey=misc_feature;inference=protein motif:PF00111
AL590842.1	EMBL	sequence_feature	1365523	1365549	.	-	.	ID=id2793;Note=PS00197 2Fe-2S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00197
AL590842.1	EMBL	gene	1365664	1366794	.	-	.	ID=gene1210;Name=ftsB;gbkey=Gene;gene=ftsB;gene_biotype=protein_coding;gene_synonym=nrdB;locus_tag=YPO1213
AL590842.1	EMBL	CDS	1365664	1366794	.	-	0	ID=cds1183;Parent=gene1210;Dbxref=GOA:Q0WHJ1,InterPro:IPR000358,InterPro:IPR009078,InterPro:IPR012348,UniProtKB/TrEMBL:Q0WHJ1,NCBI_GP:CAL19874.1;Name=CAL19874.1;Note=Similar to Escherichia coli ribonucleoside-diphosphate reductase 1 beta chain NrdB or FtsB SW:RIR2_ECOLI (P00453) (375 aa) fasta scores: E(): 0%2C88.3%25 id in 375 aa%2C and to Bacteriophage T4 ribonucleoside-diphosphate reductase beta chain NrdB SW:RIR2_BPT4 (P11156) (388 aa) fasta scores: E(): 0%2C 51.4%25 id in 385 aa;gbkey=CDS;gene=ftsB;product=ribonucleoside-diphosphate reductase 1 beta chain;protein_id=CAL19874.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1365724	1366650	.	-	.	ID=id2794;Note=Pfam match to entry PF00268 ribonuc_red%2CRibonucleotide reductases%2C score 504.40%2C E-value 1.3e-172;gbkey=misc_feature;gene=ftsB;inference=protein motif:PF00268
AL590842.1	EMBL	sequence_feature	1366402	1366452	.	-	.	ID=id2795;Note=PS00368 Ribonucleotide reductase small subunit signature.;gbkey=misc_feature;gene=ftsB;inference=protein motif:ProSite:PS00368
AL590842.1	EMBL	gene	1366957	1369245	.	-	.	ID=gene1211;Name=dnaF;gbkey=Gene;gene=dnaF;gene_biotype=protein_coding;gene_synonym=nrdA;locus_tag=YPO1214
AL590842.1	EMBL	CDS	1366957	1369245	.	-	0	ID=cds1184;Parent=gene1211;Dbxref=GOA:Q7CH95,InterPro:IPR000788,InterPro:IPR005144,InterPro:IPR008926,InterPro:IPR013346,InterPro:IPR013509,UniProtKB/TrEMBL:Q7CH95,NCBI_GP:CAL19875.1;Name=CAL19875.1;Note=Similar to Escherichia coli ribonucleoside-diphosphate reductase 1 alpha chain NrdA or DnaF SW:RIR1_ECOLI (P00452) (761 aa) fasta scores: E(): 0%2C90.9%25 id in 762 aa%2C and to Bacteriophage T4 ribonucleoside-diphosphate reductase alpha chain NrdA SW:RIR1_BPT4 (P32282) (754 aa) fasta scores: E(): 0%2C 53.1%25 id in 767 aa;gbkey=CDS;gene=dnaF;product=ribonucleoside-diphosphate reductase 1 alpha chain;protein_id=CAL19875.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1367053	1368849	.	-	.	ID=id2796;Note=Pfam match to entry PF00317 ribonucleo_red%2CRibonucleotide reductase%2C score 961.60%2C E-value 0;gbkey=misc_feature;gene=dnaF;inference=protein motif:PF00317
AL590842.1	EMBL	sequence_feature	1367383	1367451	.	-	.	ID=id2797;Note=PS00089 Ribonucleotide reductase large subunit signature.;gbkey=misc_feature;gene=dnaF;inference=protein motif:ProSite:PS00089
AL590842.1	EMBL	gene	1369739	1370467	.	-	.	ID=gene1212;Name=pufX;gbkey=Gene;gene=pufX;gene_biotype=protein_coding;gene_synonym=ubiG;locus_tag=YPO1215
AL590842.1	EMBL	CDS	1369739	1370467	.	-	0	ID=cds1185;Parent=gene1212;Dbxref=GOA:Q8ZGR6,InterPro:IPR010233,InterPro:IPR029063,NCBI_GP:CAL19876.1;Name=CAL19876.1;Note=Similar to many eg. Escherichia coli 3-demethylubiquinone-9 3-methyltransferase UbiG or PufX SW:UBIG_ECOLI (P17993) (240 aa) fasta scores: E(): 0%2C 80.3%25 id in 238 aa%2C and to Vibrio cholerae 3-demethylubiquinone-9 3-methyltransferase VC1257 TR:Q9KSJ9 (EMBL:AE004205) (245 aa) fasta scores: E(): 0%2C 74.7%25 id in 229 aa;gbkey=CDS;gene=pufX;inference=similar to sequence:INSDC:AE004205;product=3-demethylubiquinone-9 3-methyltransferase;protein_id=CAL19876.1;transl_table=11
AL590842.1	EMBL	gene	1370729	1373404	.	+	.	ID=gene1213;Name=gyrA;gbkey=Gene;gene=gyrA;gene_biotype=protein_coding;gene_synonym=hisW,nalA,parD;locus_tag=YPO1216
AL590842.1	EMBL	CDS	1370729	1373404	.	+	0	ID=cds1186;Parent=gene1213;Dbxref=GOA:Q7CH96,InterPro:IPR002205,InterPro:IPR005743,InterPro:IPR006691,InterPro:IPR013757,InterPro:IPR013758,InterPro:IPR013760,InterPro:IPR024946,UniProtKB/TrEMBL:Q7CH96,NCBI_GP:CAL19877.1;Name=CAL19877.1;Note=Similar to Escherichia coli DNA gyrase subunit a GyrA or ParD or NalA or HisW SW:GYRA_ECOLI (P09097) (875 aa) fasta scores: E(): 0%2C 85.0%25 id in 878 aa%2C and to Serratia marcescens DNA gyrase GyrA TR:O54355 (EMBL:U56906) (880 aa) fasta scores: E(): 0%2C 90.5%25 id in 886 aa;gbkey=CDS;gene=gyrA;inference=similar to sequence:INSDC:U56906;product=DNA gyrase subunit A;protein_id=CAL19877.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1370822	1372270	.	+	.	ID=id2798;Note=Pfam match to entry PF00521 DNA_topoisoIV%2C DNA gyrase/topoisomerase IV%2C subunit A%2C score 1082.70%2C E-value 0;gbkey=misc_feature;gene=gyrA;inference=protein motif:PF00521
AL590842.1	EMBL	gene	1373592	1376465	.	+	.	ID=gene1214;Name=rcsC;gbkey=Gene;gene=rcsC;gene_biotype=protein_coding;locus_tag=YPO1217
AL590842.1	EMBL	CDS	1373592	1376465	.	+	0	ID=cds1187;Parent=gene1214;Dbxref=GOA:Q7CH97,InterPro:IPR001789,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR011006,InterPro:IPR019017,UniProtKB/TrEMBL:Q7CH97,NCBI_GP:CAL19878.1;Name=CAL19878.1;Note=Possibly regulates capsule synthesis. Similar to Escherichia coli sensor protein RcsC SW:RCSC_ECOLI (P14376) (933 aa) fasta scores: E(): 0%2C 58.5%25 id in 934 aa%2C and to Pseudomonas aeruginosa probable sensor/response regulator hybrid PA2824 TR:AAG06212 (EMBL:AE004709) (786 aa) fasta scores: E(): 0%2C 30.0%25 id in 716 aa;gbkey=CDS;gene=rcsC;inference=similar to sequence:INSDC:AE004709;product=two component sensor kinase/response regulator protein RcsC;protein_id=CAL19878.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1373673	1373741	.	+	.	ID=id2799;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=rcsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1374561	1374629	.	+	.	ID=id2800;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=rcsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1375056	1375688	.	+	.	ID=id2801;Note=Pfam match to entry PF00512 signal%2C Histidine kinase%2C score 260.40%2C E-value 2.3e-74;gbkey=misc_feature;gene=rcsC;inference=protein motif:PF00512
AL590842.1	EMBL	sequence_feature	1376094	1376429	.	+	.	ID=id2802;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 140.50%2C E-value 3e-38;gbkey=misc_feature;gene=rcsC;inference=protein motif:PF00072
AL590842.1	EMBL	gene	1376533	1377186	.	-	.	ID=gene1215;Name=rcsB;gbkey=Gene;gene=rcsB;gene_biotype=protein_coding;locus_tag=YPO1218
AL590842.1	EMBL	CDS	1376533	1377186	.	-	0	ID=cds1188;Parent=gene1215;Dbxref=GOA:Q7CH98,InterPro:IPR000792,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:Q7CH98,NCBI_GP:CAL19879.1;Name=CAL19879.1;Note=Possibly regulates capsule synthesis. Similar to Escherichia coli capsular synthesis regulator component B RcsB SW:RCSB_ECOLI (P14374) (216 aa) fasta scores: E(): 0%2C91.2%25 id in 216 aa%2C and to Erwinia amylovora RcsB TR:P96320 (EMBL:Y09848) (215 aa) fasta scores: E(): 0%2C 93.0%25 id in 215 aa;gbkey=CDS;gene=rcsB;inference=similar to sequence:INSDC:Y09848;product=probable two component response regulator component B;protein_id=CAL19879.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1376548	1376745	.	-	.	ID=id2803;Note=Pfam match to entry PF00196 GerE%2C Bacterial regulatory proteins%2C luxR family%2C score 76.90%2C E-value 4.2e-19;gbkey=misc_feature;gene=rcsB;inference=protein motif:PF00196
AL590842.1	EMBL	sequence_feature	1376611	1376694	.	-	.	ID=id2804;Note=PS00622 Bacterial regulatory proteins%2C luxR family signature.;gbkey=misc_feature;gene=rcsB;inference=protein motif:ProSite:PS00622
AL590842.1	EMBL	sequence_feature	1376626	1376691	.	-	.	ID=id2805;Note=Predicted helix-turn-helix motif with score 1127 (+3.03 SD) at aa 166-187%2C sequence FLVTEIARKLNRSIKTISSQKK;gbkey=misc_feature;gene=rcsB
AL590842.1	EMBL	sequence_feature	1376827	1377177	.	-	.	ID=id2806;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 112.50%2C E-value 8e-30;gbkey=misc_feature;gene=rcsB;inference=protein motif:PF00072
AL590842.1	EMBL	pseudogene	1377189	1379881	.	-	.	ID=gene1216;Name=YPO1219;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO1219;pseudo=true
AL590842.1	EMBL	CDS	1377189	1379881	.	-	0	ID=cds1189;Parent=gene1216;Note=Similar to Escherichia coli probable sensor protein YojN SW:YOJN_ECOLI (P39838) (890 aa) fasta scores: E(): 0%2C46.5%25 id in 890 aa%2C and to Proteus mirabilis regulator of swarming behavior precursor rsbA TR:O85661 (EMBL:AF071215) (897 aa) fasta scores: E(): 0%2C 37.2%25 id in 894 aa. There is a frameshift following codon 642. The frameshift occurs within a homopolymeric tract of 7T. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=similar to sequence:INSDC:AF071215;product=putative two component sensor kinase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	1377947	1378501	.	-	.	ID=id2807;Note=Pfam match to entry PF00512 signal%2C Histidine kinase%2C score -30.10%2C E-value 0.002;gbkey=misc_feature;inference=protein motif:PF00512
AL590842.1	EMBL	gene	1378919	1378984	.	-	.	ID=gene1217;Name=YPO1220;gbkey=Gene;gene_biotype=other;locus_tag=YPO1220
AL590842.1	EMBL	sequence_feature	1378919	1378984	.	-	.	ID=id2808;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1379777	1379842	.	-	.	ID=id2809;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1379777	1379842	.	-	.	ID=gene1218;Name=YPO1220;gbkey=Gene;gene_biotype=other;locus_tag=YPO1220
AL590842.1	EMBL	gene	1379905	1381059	.	-	.	ID=gene1219;Name=YPO1221;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1221
AL590842.1	EMBL	CDS	1379905	1381059	.	-	0	ID=cds1190;Parent=gene1219;Dbxref=GOA:Q7CH99,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,NCBI_GP:CAL19881.1;Name=CAL19881.1;Note=Similar to Deinococcus radiodurans transport protein%2C putative dr2502 TR:Q9RRI8 (EMBL:AE002079) (471 aa) fasta scores: E(): 0%2C 39.8%25 id in 367 aa%2C and to Streptomyces coelicolor putative transport protein scl6.05 TR:Q9L111 (EMBL:AL159139) (403 aa) fasta scores: E(): 1.2e-32%2C 36.0%25 id in 367 aa%3B~one of 2 probable transmembrane helices predicted;gbkey=CDS;inference=similar to sequence:INSDC:AL159139;product=putative membrane protein;protein_id=CAL19881.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1379914	1379979	.	-	.	ID=id2810;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1379995	1380060	.	-	.	ID=id2811;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1380100	1380165	.	-	.	ID=id2812;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1380178	1380231	.	-	.	ID=id2813;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1380268	1380324	.	-	.	ID=id2814;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1380385	1380450	.	-	.	ID=id2815;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1380487	1380552	.	-	.	ID=id2816;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1380565	1380630	.	-	.	ID=id2817;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1380670	1380735	.	-	.	ID=id2818;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1380748	1380813	.	-	.	ID=id2819;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1380835	1380900	.	-	.	ID=id2820;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1380946	1380996	.	-	.	ID=id2821;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1381758	1381842	.	-	.	ID=gene1220;Name=micF;gbkey=Gene;gene=micF;gene_biotype=misc_RNA
AL590842.1	EMBL	transcript	1381758	1381842	.	-	.	ID=rna30;Parent=gene1220;gbkey=misc_RNA;gene=micF
AL590842.1	EMBL	exon	1381758	1381842	.	-	.	ID=id2822;Parent=rna30;gbkey=misc_RNA;gene=micF
AL590842.1	EMBL	gene	1382092	1383277	.	+	.	ID=gene1221;Name=ompC;end_range=1383277,.;gbkey=Gene;gene=ompC;gene_biotype=protein_coding;gene_synonym=meoA,par;locus_tag=YPO1222;partial=true
AL590842.1	EMBL	mRNA	1382092	1383277	.	+	.	ID=rna31;Parent=gene1221;end_range=1383277,.;gbkey=mRNA;gene=ompC;partial=true
AL590842.1	EMBL	exon	1382092	1383277	.	+	.	ID=id2823;Parent=rna31;end_range=1383277,.;gbkey=mRNA;gene=ompC;partial=true
AL590842.1	EMBL	CDS	1382162	1383277	.	+	0	ID=cds1191;Parent=rna31;Dbxref=GOA:Q0WHI4,InterPro:IPR001702,InterPro:IPR001897,InterPro:IPR013793,InterPro:IPR023614,UniProtKB/TrEMBL:Q0WHI4,NCBI_GP:CAL19882.1;Name=CAL19882.1;Note=Similar to Escherichia coli outer membrane protein C precursor OmpC or MeoA or Par SW:OMPC_ECOLI (P06996) (367 aa) fasta scores: E(): 0%2C 70.3%25 id in 381 aa%2C and to Serratia marcescens outer membrane protein C precursor OmpC SW:OMPC_SERMA (Q54471) (376 aa) fasta scores: E(): 0%2C 68.1%25 id in 382 aa;gbkey=CDS;gene=ompC;product=outer membrane protein C%2C porin;protein_id=CAL19882.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1382240	1383274	.	+	.	ID=id2824;Note=Pfam match to entry PF00267 Gram-ve_porins%2C General diffusion Gram-negative porins%2C score 677.50%2C E-value 4.3e-228;gbkey=misc_feature;gene=ompC;inference=protein motif:PF00267
AL590842.1	EMBL	sequence_feature	1383128	1383178	.	+	.	ID=id2825;Note=PS00576 General diffusion Gram-negative porins signature.;gbkey=misc_feature;gene=ompC;inference=protein motif:ProSite:PS00576
AL590842.1	EMBL	five_prime_UTR	1382092	1382161	.	+	.	ID=id2826;Note=acknowledging Delihas N.;gbkey=5'UTR;gene=ompC
AL590842.1	EMBL	repeat_region	1383334	1384045	.	+	.	ID=id2827;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	1383479	1383937	.	+	.	ID=gene1222;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO1223
AL590842.1	EMBL	CDS	1383479	1383937	.	+	0	ID=cds1192;Parent=gene1222;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL19883.1;Name=CAL19883.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL19883.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1383533	1383844	.	+	.	ID=id2828;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	tRNA	1384371	1384458	.	+	.	ID=rna32;Note=tRNA Ser anticodon TGA%2C Cove score 68.39;gbkey=tRNA;product=tRNA-Ser
AL590842.1	EMBL	exon	1384371	1384458	.	+	.	ID=id2829;Parent=rna32;Note=tRNA Ser anticodon TGA%2C Cove score 68.39;gbkey=tRNA;product=tRNA-Ser
AL590842.1	EMBL	tRNA	1384464	1384539	.	+	.	ID=rna33;Note=tRNA Thr anticodon TGT%2C Cove score 93.97;gbkey=tRNA;product=tRNA-Thr
AL590842.1	EMBL	exon	1384464	1384539	.	+	.	ID=id2830;Parent=rna33;Note=tRNA Thr anticodon TGT%2C Cove score 93.97;gbkey=tRNA;product=tRNA-Thr
AL590842.1	EMBL	gene	1384727	1385893	.	-	.	ID=gene1223;Name=ampH;gbkey=Gene;gene=ampH;gene_biotype=protein_coding;locus_tag=YPO1224
AL590842.1	EMBL	CDS	1384727	1385893	.	-	0	ID=cds1193;Parent=gene1223;Dbxref=InterPro:IPR001466,InterPro:IPR012338,PDB:3OZH,PDB:3RJU,UniProtKB/TrEMBL:Q7CHA2,NCBI_GP:CAL19884.1;Name=CAL19884.1;Note=Similar to Escherichia coli penicillin-binding protein AmpH SW:AMPH_ECOLI (P46127) (376 aa) fasta scores: E(): 0%2C 62.5%25 id in 376 aa;gbkey=CDS;gene=ampH;product=putative penicillin-binding protein;protein_id=CAL19884.1;transl_table=11
AL590842.1	EMBL	gene	1386168	1387664	.	-	.	ID=gene1224;Name=YPO1226;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1226
AL590842.1	EMBL	CDS	1386168	1387664	.	-	0	ID=cds1194;Parent=gene1224;Dbxref=InterPro:IPR016196,UniProtKB/TrEMBL:Q0WHI1,NCBI_GP:CAL19885.1;Name=CAL19885.1;Note=Weakly similar to many sugar transporters eg. Escherichia coli melibiose carrier protein MelB SW:MELB_ECOLI (P02921) (469 aa) fasta scores: E(): 7.4e-13%2C23.6%25 id in 478 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative transport protein;protein_id=CAL19885.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1386387	1386452	.	-	.	ID=id2831;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1386498	1386563	.	-	.	ID=id2832;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1386639	1386704	.	-	.	ID=id2833;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1386717	1386773	.	-	.	ID=id2834;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1386795	1386860	.	-	.	ID=id2835;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1386906	1386971	.	-	.	ID=id2836;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1387098	1387163	.	-	.	ID=id2837;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1387179	1387244	.	-	.	ID=id2838;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1387308	1387373	.	-	.	ID=id2839;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1387389	1387439	.	-	.	ID=id2840;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1387500	1387565	.	-	.	ID=id2841;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1387578	1387643	.	-	.	ID=id2842;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1388071	1389099	.	+	.	ID=gene1225;Name=YPO1228;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1228
AL590842.1	EMBL	CDS	1388071	1389099	.	+	0	ID=cds1195;Parent=gene1225;Dbxref=GOA:Q7CHA3,InterPro:IPR001279,InterPro:IPR024884,UniProtKB/TrEMBL:Q7CHA3,NCBI_GP:CAL19886.1;Name=CAL19886.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA3969 TR:AAG07356 (EMBL:AE004814) (361 aa) fasta scores: E(): 0%2C 39.5%25 id in 319 aa%2C and to Streptomyces coelicolor hypothetical protein SC5C7.08 TR:O86705 (EMBL:AL031515) (346 aa) fasta scores: E(): 0%2C 37.0%25 id in 322 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031515;product=conserved hypothetical protein;protein_id=CAL19886.1;transl_table=11
AL590842.1	EMBL	gene	1389173	1390960	.	-	.	ID=gene1226;Name=cheD2;gbkey=Gene;gene=cheD2;gene_biotype=protein_coding;gene_synonym=tsr2;locus_tag=YPO1229
AL590842.1	EMBL	CDS	1389173	1390960	.	-	0	ID=cds1196;Parent=gene1226;Dbxref=GOA:Q0WHH9,InterPro:IPR003660,InterPro:IPR004010,InterPro:IPR004089,InterPro:IPR029151,UniProtKB/TrEMBL:Q0WHH9,NCBI_GP:CAL19887.1;Name=CAL19887.1;Note=C-terminal region similar to many eg. Escherichia coli methyl-accepting chemotaxis protein I CheD SW:MCP1_ECOLI (P02942) (551 aa) fasta scores: E(): 0%2C 46.6%25 id in 369 aa%2C and to Salmonella typhimurium methyl-accepting chemotaxis citrate transducer Tcp SW:MCPC_SALTY (Q02755) (547 aa) fasta scores: E(): 0%2C 50.1%25 id in 351 aa;gbkey=CDS;gene=cheD2;inference=protein motif:TMHMM:2.0;product=putative methyl-accepting chemotaxis protein;protein_id=CAL19887.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1389464	1389646	.	-	.	ID=id2843;Note=Pfam match to entry PF00015 MCPsignal%2CMethyl-accepting chemotaxis protein (MCP) signaling domain%2Cscore 129.90%2C E-value 1e-35;gbkey=misc_feature;gene=cheD2;inference=protein motif:PF00015
AL590842.1	EMBL	sequence_feature	1389932	1390147	.	-	.	ID=id2844;Note=Pfam match to entry PF00672 DUF5%2C HAMP domain%2C score 67.20%2C E-value 3.6e-16;gbkey=misc_feature;gene=cheD2;inference=protein motif:PF00672
AL590842.1	EMBL	sequence_feature	1390091	1390156	.	-	.	ID=id2845;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=cheD2;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1390865	1390930	.	-	.	ID=id2846;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=cheD2;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1391382	1392317	.	-	.	ID=gene1227;Name=pla2;gbkey=Gene;gene=pla2;gene_biotype=protein_coding;locus_tag=YPO1231
AL590842.1	EMBL	CDS	1391382	1392317	.	-	0	ID=cds1197;Parent=gene1227;Dbxref=GOA:Q7CHA4,InterPro:IPR000036,InterPro:IPR020080,InterPro:IPR023619,UniProtKB/TrEMBL:Q7CHA4,NCBI_GP:CAL19888.1;Name=CAL19888.1;Note=Similar to virulence associated proteases eg. Yersinia pestis plasmid pPCP1 coagulase/fibrinolysin precursor Pla SW:COLY_YERPE (P17811) (312 aa) fasta scores: E(): 0%2C 43.5%25 id in 313 aa%2C and to Salmonella typhimurium outer membrane protease E precursor PgtE or PrtA SW:PGTE_SALTY (P06185) (296 aa) fasta scores: E(): 0%2C 47.6%25 id in 248 aa%2C and to Escherichia coli protease VII precursor OmpT SW:OMPT_ECOLI (P09169) (317 aa) fasta scores: E(): 0%2C 40.0%25 id in 290 aa%2C and to Shigella flexneri 2a icsa-cleaving protease IcsP TR:O33641 (EMBL:AF001633) (326 aa) fasta scores: E(): 0%2C 37.2%25 id in 301 aa;gbkey=CDS;gene=pla2;inference=similar to sequence:INSDC:AF001633;product=putative outer membrane-associated protease;protein_id=CAL19888.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1391475	1392317	.	-	.	ID=id2847;Note=Pfam match to entry PF01278 Omptin%2C Omptin family%2Cscore 332.10%2C E-value 6.4e-96;gbkey=misc_feature;gene=pla2;inference=protein motif:PF01278
AL590842.1	EMBL	gene	1392489	1392731	.	-	.	ID=gene1228;Name=dinI;gbkey=Gene;gene=dinI;gene_biotype=protein_coding;gene_synonym=msgA;locus_tag=YPO1232
AL590842.1	EMBL	CDS	1392489	1392731	.	-	0	ID=cds1198;Parent=gene1228;Dbxref=InterPro:IPR010391,UniProtKB/TrEMBL:Q7CHA5,NCBI_GP:CAL19889.1;Name=CAL19889.1;Note=Similar to Salmonella typhimurium virulence protein MsgA SW:MSGA_SALTY (Q56031) (79 aa) fasta scores: E(): 1.3e-15%2C 60.8%25 id in 79 aa%2C and to Escherichia coli DNA-damage-inducible protein I DinI SW:DINI_ECOLI (Q47143) (81 aa) fasta scores: E(): 0.00067%2C 30.5%25 id in 82 aa;gbkey=CDS;gene=dinI;product=putative stress response protein;protein_id=CAL19889.1;transl_table=11
AL590842.1	EMBL	gene	1392937	1393659	.	-	.	ID=gene1229;Name=YPO1233;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1233
AL590842.1	EMBL	CDS	1392937	1393659	.	-	0	ID=cds1199;Parent=gene1229;Dbxref=GOA:Q7CHA6,InterPro:IPR001387,InterPro:IPR010982,InterPro:IPR015927,InterPro:IPR019759,InterPro:IPR028360,UniProtKB/TrEMBL:Q7CHA6,NCBI_GP:CAL19890.1;Name=CAL19890.1;Note=Similar to many cI-like repressors eg. Bacteriophage HK97 prophage repressor cI repressor protein TR:Q9MCQ2 (EMBL:AF069529) (237 aa) fasta scores: E(): 0%2C 47.7%25 id in 237 aa%2C and to Bacteriophage L c2 repressor protein TR:Q37946 (EMBL:X94331) (220 aa) fasta scores: E(): 0%2C50.5%25 id in 218 aa%2C and to Escherichia coli phage lambda repressor protein cI TR:CAB96428 (EMBL:AJ277653) (237 aa) fasta scores: E(): 0%2C 47.3%25 id in 237 aa;gbkey=CDS;inference=similar to sequence:INSDC:X94331;product=putative prophage repressor protein;protein_id=CAL19890.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1392985	1393362	.	-	.	ID=id2848;Note=Pfam match to entry PF00717 Peptidase_S24%2C Peptidase family S24%2C score 142.90%2C E-value 5.6e-39;gbkey=misc_feature;inference=protein motif:PF00717
AL590842.1	EMBL	sequence_feature	1393435	1393602	.	-	.	ID=id2849;Note=Pfam match to entry PF01381 HTH_3%2C Helix-turn-helix%2Cscore 38.00%2C E-value 2.2e-07;gbkey=misc_feature;inference=protein motif:PF01381
AL590842.1	EMBL	sequence_feature	1393507	1393572	.	-	.	ID=id2850;Note=Predicted helix-turn-helix motif with score 1936 (+5.78 SD) at aa 30-51%2C sequence ISQESVAHELGVGQSAVNQFLN;gbkey=misc_feature
AL590842.1	EMBL	gene	1393933	1394412	.	+	.	ID=gene1230;Name=YPO1234;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1234
AL590842.1	EMBL	CDS	1393933	1394412	.	+	0	ID=cds1200;Parent=gene1230;Dbxref=GOA:Q7CHA7,InterPro:IPR010534,UniProtKB/TrEMBL:Q7CHA7,NCBI_GP:CAL19891.1;Name=CAL19891.1;Note=Similar to bacteriophage APSE-1 probable antitermination protein Q SW:REGQ_BPAPS (Q9T1U3) (148 aa) fasta scores: E(): 2.8e-25%2C 55.6%25 id in 124 aa%2C and to bacteriophage 933W%2C and bacteriophage VT2-Sa antitermination protein Q SW:REGQ_BP933 (Q9ZWW9) (144 aa) fasta scores: E(): 1.4e-18%2C 41.2%25 id in 136 aa%2C and to Escherichia coli O157:H7 antiterminator protein Q TR:Q9KXE0 (EMBL:AP000422) (157 aa) fasta scores: E(): 1.5e-18%2C 41.2%25 id in 136 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP000422;product=probable phage antitermination protein Q;protein_id=CAL19891.1;transl_table=11
AL590842.1	EMBL	gene	1394614	1395927	.	+	.	ID=gene1231;Name=YPO1235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1235
AL590842.1	EMBL	CDS	1394614	1395927	.	+	0	ID=cds1201;Parent=gene1231;Dbxref=InterPro:IPR010737,UniProtKB/TrEMBL:Q7CHA8,NCBI_GP:CAL19892.1;Name=CAL19892.1;Note=Similar to Escherichia coli hypothetical protein YgbK SW:YGBK_ECOLI (Q46889) (388 aa) fasta scores: E(): 0%2C46.9%25 id in 399 aa%2C and to Haemophilus influenzae hypothetical protein HI1011 SW:YGBK_HAEIN (P44093) (413 aa) fasta scores: E(): 0%2C 48.1%25 id in 426 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19892.1;transl_table=11
AL590842.1	EMBL	gene	1395924	1396535	.	+	.	ID=gene1232;Name=YPO1236;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1236
AL590842.1	EMBL	CDS	1395924	1396535	.	+	0	ID=cds1202;Parent=gene1232;Dbxref=InterPro:IPR001303,UniProtKB/TrEMBL:Q0WHH3,NCBI_GP:CAL19893.1;Name=CAL19893.1;Note=Similar to Escherichia coli hypothetical protein YgbL SW:YGBL_ECOLI (Q46890) (212 aa) fasta scores: E(): 0%2C57.1%25 id in 168 aa%2C and to Escherichia coli L-fuculose phosphate aldolase FucA or FucC or Prd SW:FUCA_ECOLI (P11550) (215 aa) fasta scores: E(): 2.6e-07%2C 32.7%25 id in 159 aa;gbkey=CDS;product=putative class II aldolase-family protein;protein_id=CAL19893.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1395999	1396529	.	+	.	ID=id2851;Note=Pfam match to entry PF00596 Aldolase_II%2C Class II Aldolase and Adducin N-terminal domain.%2C score 0.60%2CE-value 5e-06;gbkey=misc_feature;inference=protein motif:PF00596
AL590842.1	EMBL	gene	1396615	1397430	.	+	.	ID=gene1233;Name=YPO1237;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1237
AL590842.1	EMBL	CDS	1396615	1397430	.	+	0	ID=cds1203;Parent=gene1233;Dbxref=GOA:Q7CHA9,InterPro:IPR001034,InterPro:IPR011991,InterPro:IPR014036,InterPro:IPR018356,UniProtKB/TrEMBL:Q7CHA9,NCBI_GP:CAL19894.1;Name=CAL19894.1;Note=Similar to Escherichia coli hypothetical transcriptional regulator YgbI SW:YGBI_ECOLI (P52598) (265 aa) fasta scores: E(): 0%2C 42.2%25 id in 258 aa%2C and to Escherichia coli putative Aga operon transcriptional repressor AgaR SW:AGAR_ECOLI (P42902) (269 aa) fasta scores: E(): 2.7e-21%2C 29.8%25 id in 255 aa;gbkey=CDS;product=putative transcriptional regulatory protein;protein_id=CAL19894.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1396636	1397322	.	+	.	ID=id2852;Note=Pfam match to entry PF00455 deoR%2C Bacterial regulatory proteins%2C deoR family%2C score 193.90%2C E-value 2.5e-54;gbkey=misc_feature;inference=protein motif:PF00455
AL590842.1	EMBL	sequence_feature	1396636	1396740	.	+	.	ID=id2853;Note=PS00894 Bacterial regulatory proteins%2C deoR family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00894
AL590842.1	EMBL	sequence_feature	1396678	1396743	.	+	.	ID=id2854;Note=Predicted helix-turn-helix motif with score 1754 (+5.16 SD) at aa 22-43%2C sequence ASFMDLAELMNVSHMTVRRDIQ;gbkey=misc_feature
AL590842.1	EMBL	gene	1397448	1398200	.	+	.	ID=gene1234;Name=YPO1238;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1238
AL590842.1	EMBL	CDS	1397448	1398200	.	+	0	ID=cds1204;Parent=gene1234;Dbxref=GOA:Q0WHH1,InterPro:IPR013022,InterPro:IPR026040,UniProtKB/TrEMBL:Q0WHH1,NCBI_GP:CAL19895.1;Name=CAL19895.1;Note=Similar to hypothetical proteins from both prokaryotes and eukaryotes Escherichia coli hypothetical protein YgbM TR:AAG14983 (EMBL:AF242210) (258 aa) fasta scores: E(): 0%2C 42.5%25 id in 240 aa%2C and to Drosophila melanogaster transient receptor potential locus C protein precursor Gip or CG2227 SW:TRLC_DROME (P36951) (264 aa) fasta scores: E(): 1.6e-28%2C 38.5%25 id in 244 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF242210;product=conserved hypothetical protein;protein_id=CAL19895.1;transl_table=11
AL590842.1	EMBL	gene	1398814	1399104	.	+	.	ID=gene1235;Name=YPO1239;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1239
AL590842.1	EMBL	CDS	1398814	1399104	.	+	0	ID=cds1205;Parent=gene1235;Dbxref=UniProtKB/TrEMBL:Q7CHB0,NCBI_GP:CAL19896.1;Name=CAL19896.1;Note=Weakly similar to Bacteriophage N15 gp53 protein 53 TR:O64361 (EMBL:AF064539) (101 aa) fasta scores: E(): 0.43%2C25.6%25 id in 78 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF064539;product=putative bacteriophage protein;protein_id=CAL19896.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1398856	1398924	.	+	.	ID=id2855;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1399150	1399767	.	+	.	ID=gene1236;Name=YPO1240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1240
AL590842.1	EMBL	CDS	1399150	1399767	.	+	0	ID=cds1206;Parent=gene1236;Dbxref=GOA:Q0WHG9,UniProtKB/TrEMBL:Q0WHG9,NCBI_GP:CAL19897.1;Name=CAL19897.1;Note=no significant database hits;gbkey=CDS;product=putative ATP-binding protein;protein_id=CAL19897.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1399228	1399251	.	+	.	ID=id2856;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1399772	1399966	.	+	.	ID=gene1237;Name=YPO1241;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1241
AL590842.1	EMBL	CDS	1399772	1399966	.	+	0	ID=cds1207;Parent=gene1237;Dbxref=InterPro:IPR024400,UniProtKB/TrEMBL:Q74WH1,NCBI_GP:CAL19898.1;Name=CAL19898.1;Note=Similar to Bacteriophage Mu protein gp38 SW:VG38_BPMU (P79677) (67 aa) fasta scores: E(): 6.6e-06%2C48.9%25 id in 45 aa%2C and to Haemophilus influenzae Mu-like prophage FluMu protein gp38 HI1510 SW:VG38_HAEIN (P44232) (63 aa) fasta scores: E(): 0.07%2C 37.5%25 id in 40 aa;gbkey=CDS;product=putative bacteriophage protein;protein_id=CAL19898.1;transl_table=11
AL590842.1	EMBL	gene	1399963	1401471	.	+	.	ID=gene1238;Name=YPO1242;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1242
AL590842.1	EMBL	CDS	1399963	1401471	.	+	0	ID=cds1208;Parent=gene1238;Dbxref=InterPro:IPR007067,UniProtKB/TrEMBL:Q7CHB1,NCBI_GP:CAL19899.1;Name=CAL19899.1;Note=Similar to Bacteriophage Mu tail sheath protein L or 39 SW:VPL_BPMU (P79678) (495 aa) fasta scores: E(): 0%2C38.1%25 id in 501 aa%2C and to Haemophilus influenzae Mu-like prophage FluMu tail sheath protein HI1511 SW:VPL_HAEIN (P44233) (487 aa) fasta scores: E(): 0%2C 40.0%25 id in 500 aa%2Cand to Neisseria meningitidis phage sheath protein NMB1104 TR:Q9JZD4 (EMBL:AE002460) (469 aa) fasta scores: E(): 8.7e-10%2C 27.2%25 id in 493 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE002460;product=putative bacteriophage tail sheath protein;protein_id=CAL19899.1;transl_table=11
AL590842.1	EMBL	gene	1401493	1401861	.	+	.	ID=gene1239;Name=YPO1243;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1243
AL590842.1	EMBL	CDS	1401493	1401861	.	+	0	ID=cds1209;Parent=gene1239;Dbxref=InterPro:IPR019596,UniProtKB/TrEMBL:Q7CHB2,NCBI_GP:CAL19900.1;Name=CAL19900.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19900.1;transl_table=11
AL590842.1	EMBL	gene	1401863	1402162	.	+	.	ID=gene1240;Name=YPO1244;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1244
AL590842.1	EMBL	CDS	1401863	1402162	.	+	0	ID=cds1210;Parent=gene1240;Dbxref=InterPro:IPR019289,UniProtKB/TrEMBL:Q7CHB3,NCBI_GP:CAL19901.1;Name=CAL19901.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19901.1;transl_table=11
AL590842.1	EMBL	gene	1402283	1403776	.	+	.	ID=gene1241;Name=YPO1245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1245
AL590842.1	EMBL	CDS	1402283	1403776	.	+	0	ID=cds1211;Parent=gene1241;Dbxref=GOA:Q7CHB4,UniProtKB/TrEMBL:Q7CHB4,NCBI_GP:CAL19902.1;Name=CAL19902.1;Note=Contains a region of weak similarity to Aedes albopictus densovirus coat protein VP1 [contains: coat protein vp2] vP SW:COAT_AEDEB (Q90187) (355 aa) fasta scores: E(): 0.92%2C 21.8%25 id in 206 aa;gbkey=CDS;product=putative bacteriophage coat protein;protein_id=CAL19902.1;transl_table=11
AL590842.1	EMBL	gene	1404043	1405449	.	+	.	ID=gene1242;Name=YPO1246;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1246
AL590842.1	EMBL	CDS	1404043	1405449	.	+	0	ID=cds1212;Parent=gene1242;Dbxref=InterPro:IPR009826,UniProtKB/TrEMBL:Q7CHB5,NCBI_GP:CAL19903.1;Name=CAL19903.1;Note=Similar to Haemophilus influenzae Mu-like prophage FluMu DNA circulation protein HI1515 SW:VPN_HAEIN (P71389) (455 aa) fasta scores: E(): 1.2e-12%2C 25.3%25 id in 454 aa%2Cand to Bacteriophage Mu DNA circularisation protein N or 43 SW:VPN_BPMU (P08557) (491 aa) fasta scores: E(): 4.4e-08%2C24.6%25 id in 505 aa;gbkey=CDS;product=putative bacteriophage protein;protein_id=CAL19903.1;transl_table=11
AL590842.1	EMBL	gene	1405446	1406501	.	+	.	ID=gene1243;Name=YPO1247;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1247
AL590842.1	EMBL	CDS	1405446	1406501	.	+	0	ID=cds1213;Parent=gene1243;Dbxref=InterPro:IPR026276,UniProtKB/TrEMBL:Q7CHB6,NCBI_GP:CAL19904.1;Name=CAL19904.1;Note=Similar to Bacteriophage Mu 43 kDa tail protein P or 44 SW:VPP_BPMU (P08558) (379 aa) fasta scores: E(): 8.3e-25%2C 28.2%25 id in 351 aa;gbkey=CDS;product=putative bacteriophage tail protein;protein_id=CAL19904.1;transl_table=11
AL590842.1	EMBL	gene	1406517	1407113	.	+	.	ID=gene1244;Name=YPO1248;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1248
AL590842.1	EMBL	CDS	1406517	1407113	.	+	0	ID=cds1214;Parent=gene1244;Dbxref=InterPro:IPR014462,UniProtKB/TrEMBL:Q7CHB7,NCBI_GP:CAL19905.1;Name=CAL19905.1;Note=Similar to Neisseria meningitidis (serogroup A) hypothetical protein NMA1321 TR:Q9JQQ9 (EMBL:AL162755) (222 aa) fasta scores: E(): 2.4e-09%2C 36.9%25 id in 130 aa%2C and to Bacteriophage Mu protein gp45 45 SW:VG45_BPMU (Q9T1V4) (197 aa) fasta scores: E(): 0.00018%2C 27.7%25 id in 148 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL162755;product=putative bacteriophage (baseplate assembly) protein;protein_id=CAL19905.1;transl_table=11
AL590842.1	EMBL	gene	1407110	1407565	.	+	.	ID=gene1245;Name=YPO1249;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1249
AL590842.1	EMBL	CDS	1407110	1407565	.	+	0	ID=cds1215;Parent=gene1245;Dbxref=InterPro:IPR010877,UniProtKB/TrEMBL:Q7CHB8,NCBI_GP:CAL19906.1;Name=CAL19906.1;Note=Similar to Bacteriophage Mu protein gp46 46 SW:VG46_BPMU (Q9T1V3) (145 aa) fasta scores: E(): 7.5e-16%2C44.6%25 id in 130 aa%2C and to Haemophilus influenzae Mu-like prophage FluMu protein gp46 hi1519 SW:VG46_HAEIN (P44239) (135 aa) fasta scores: E(): 1.5e-09%2C 32.2%25 id in 146 aa;gbkey=CDS;product=putative bacteriophage protein GP46;protein_id=CAL19906.1;transl_table=11
AL590842.1	EMBL	gene	1407569	1408705	.	+	.	ID=gene1246;Name=YPO1250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1250
AL590842.1	EMBL	CDS	1407569	1408705	.	+	0	ID=cds1216;Parent=gene1246;Dbxref=InterPro:IPR006949,UniProtKB/TrEMBL:Q7CHB9,NCBI_GP:CAL19907.1;Name=CAL19907.1;Note=Similar to Bacteriophage Mu protein gp47 47 SW:VG47_BPMU (Q9T1V2) (360 aa) fasta scores: E(): 8.1e-15%2C32.2%25 id in 379 aa%2C and to Haemophilus influenzae Mu-like prophage FluMu protein gp47 hi1520 SW:VG47_HAEIN (P44240) (355 aa) fasta scores: E(): 2.2e-12%2C 31.0%25 id in 384 aa;gbkey=CDS;product=putative bacteriophage protein;protein_id=CAL19907.1;transl_table=11
AL590842.1	EMBL	gene	1408702	1408962	.	+	.	ID=gene1247;Name=YPO1250a;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1250a
AL590842.1	EMBL	CDS	1408702	1408962	.	+	0	ID=cds1217;Parent=gene1247;Dbxref=InterPro:IPR018755,UniProtKB/TrEMBL:Q7CHC0,NCBI_GP:CAL19908.1;Name=CAL19908.1;Note=Similar to Bacteriophage Mu protein gp48 48 SW:VG48_BPMU (Q9T1V1) (180 aa) fasta scores: E(): 1.4e-05%2C33.8%25 id in 74 aa%2C and to Haemophilus influenzae Mu-like prophage FluMu protein gp48 hi1521 SW:VG48_HAEIN (P44241) (168 aa) fasta scores: E(): 3.5%2C 44.1%25 id in 34 aa;gbkey=CDS;product=putative bacteriophage protein;protein_id=CAL19908.1;transl_table=11
AL590842.1	EMBL	gene	1408959	1409306	.	+	.	ID=gene1248;Name=YPO1251;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1251
AL590842.1	EMBL	CDS	1408959	1409306	.	+	0	ID=cds1218;Parent=gene1248;Dbxref=InterPro:IPR018755,UniProtKB/TrEMBL:Q74WI2,NCBI_GP:CAL19909.1;Name=CAL19909.1;Note=Similar to Escherichia coli hypothetical 21.6 kDa protein in lambdoid prophage E14 region precursor YmfQ SW:YMFQ_ECOLI (P75982) (194 aa) fasta scores: E(): 6.3e-10%2C33.3%25 id in 123 aa%2C and to Neisseria meningitidis hypothetical protein NMA1324 TR:Q9JUG4 (EMBL:AL162755) (186 aa) fasta scores: E(): 4.4e-05%2C 30.1%25 id in 113 aa%2C and to Shigella flexneri bacteriophage V glucosyl transferase TR:O22003 (EMBL:U82619) (137 aa) fasta scores: E(): 0.00015%2C 30.3%25 id in 99 aa%2C and to Haemophilus influenzae Mu-like prophage FluMu protein gp48 hi1521 SW:VG48_HAEIN (P44241) (168 aa) fasta scores: E(): 0.93%2C 24.3%25 id in 115 aa;gbkey=CDS;inference=similar to sequence:INSDC:U82619;product=putative bacteriophage protein;protein_id=CAL19909.1;transl_table=11
AL590842.1	EMBL	gene	1409403	1410182	.	+	.	ID=gene1249;Name=stf;gbkey=Gene;gene=stf;gene_biotype=protein_coding;locus_tag=YPO1252
AL590842.1	EMBL	CDS	1409403	1410182	.	+	0	ID=cds1219;Parent=gene1249;Dbxref=InterPro:IPR011083,UniProtKB/TrEMBL:Q7CHC1,NCBI_GP:CAL19910.1;Name=CAL19910.1;Note=Similar to Bacteriophage HK97 tail fiber Stf TR:Q9MCR6 (EMBL:AF069529) (321 aa) fasta scores: E(): 0%2C52.9%25 id in 208 aa%2C and to Escherichia coli DNA inversion product sc/svmR TR:Q47429 (EMBL:X62121) (760 aa) fasta scores: E(): 1.8e-28%2C 49.2%25 id in 177 aa%2C and to Escherichia coli side tail fiber protein homolog from lambdoid prophage S14 StfE or b1157 SW:STFE_ECOLI (P33227) (166 aa) fasta scores: E(): 1.1e-27%2C 49.4%25 id in 166 aa;gbkey=CDS;gene=stf;inference=similar to sequence:INSDC:X62121;product=putative bacteriophage tail fiber protein;protein_id=CAL19910.1;transl_table=11
AL590842.1	EMBL	gene	1410480	1411220	.	+	.	ID=gene1250;Name=YPO1253;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1253
AL590842.1	EMBL	CDS	1410480	1411220	.	+	0	ID=cds1220;Parent=gene1250;Dbxref=GOA:Q7CHC2,InterPro:IPR000281,InterPro:IPR001347,InterPro:IPR009057,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CHC2,NCBI_GP:CAL19911.1;Name=CAL19911.1;Note=Similar to Bacillus halodurans BH0181 protein TR:Q9KGC3 (EMBL:AP001507) (241 aa) fasta scores: E(): 0%2C46.3%25 id in 240 aa%2C and weakly to Thermotoga maritima transcriptional regulator RpiR family TM1228 TR:Q9X0V5 (EMBL:AE001779) (266 aa) fasta scores: E(): 1.2e-10%2C 23.6%25 id in 233 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001507;product=putative LacI-family regulatory protein;protein_id=CAL19911.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1410570	1410635	.	+	.	ID=id2857;Note=Predicted helix-turn-helix motif with score 1754 (+5.16 SD) at aa 31-52%2C sequence MTIRELADASGVSTTTVLRFCK;gbkey=misc_feature
AL590842.1	EMBL	sequence_feature	1410576	1410632	.	+	.	ID=id2858;Note=PS00356 Bacterial regulatory proteins%2C lacI family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00356
AL590842.1	EMBL	sequence_feature	1410792	1411187	.	+	.	ID=id2859;Note=Pfam match to entry PF01380 SIS%2C SIS domain%2C score 42.30%2C E-value 1.1e-08;gbkey=misc_feature;inference=protein motif:PF01380
AL590842.1	EMBL	gene	1411511	1412947	.	+	.	ID=gene1251;Name=bglA;gbkey=Gene;gene=bglA;gene_biotype=protein_coding;locus_tag=YPO1254
AL590842.1	EMBL	CDS	1411511	1412947	.	+	0	ID=cds1221;Parent=gene1251;Dbxref=GOA:Q0WHF4,InterPro:IPR001360,InterPro:IPR013781,InterPro:IPR017853,InterPro:IPR018120,UniProtKB/TrEMBL:Q0WHF4,NCBI_GP:CAL19912.1;Name=CAL19912.1;Note=Similar to Escherichia coli 6-phospho-beta-glucosidase BglA SW:BGLA_ECOLI (Q46829) (479 aa) fasta scores: E(): 0%2C 78.6%25 id in 473 aa%2C and to Bacillus subtilis 6-phospho-beta-glucosidase BglA SW:BGLA_BACSU (P42973) (479 aa) fasta scores: E(): 0%2C 63.9%25 id in 476 aa;gbkey=CDS;gene=bglA;product=6-phospho-beta-glucosidase;protein_id=CAL19912.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1411514	1411621	.	+	.	ID=id2860;Note=Pfam match to entry PF00232 Glyco_hydro_1%2C Glycosyl hydrolase family 1%2C score 49.30%2C E-value 2.2e-13;gbkey=misc_feature;gene=bglA;inference=protein motif:PF00232
AL590842.1	EMBL	sequence_feature	1411538	1411582	.	+	.	ID=id2861;Note=PS00653 Glycosyl hydrolases family 1 N-terminal signature.;gbkey=misc_feature;gene=bglA;inference=protein motif:ProSite:PS00653
AL590842.1	EMBL	sequence_feature	1411700	1412050	.	+	.	ID=id2862;Note=Pfam match to entry PF00232 Glyco_hydro_1%2C Glycosyl hydrolase family 1%2C score 192.00%2C E-value 3.7e-54;gbkey=misc_feature;gene=bglA;inference=protein motif:PF00232
AL590842.1	EMBL	sequence_feature	1412120	1412935	.	+	.	ID=id2863;Note=Pfam match to entry PF00232 Glyco_hydro_1%2C Glycosyl hydrolase family 1%2C score 219.10%2C E-value 6.6e-62;gbkey=misc_feature;gene=bglA;inference=protein motif:PF00232
AL590842.1	EMBL	sequence_feature	1412624	1412650	.	+	.	ID=id2864;Note=PS00572 Glycosyl hydrolases family 1 active site.;gbkey=misc_feature;gene=bglA;inference=protein motif:ProSite:PS00572
AL590842.1	EMBL	gene	1413073	1413435	.	-	.	ID=gene1252;Name=YPO1255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1255
AL590842.1	EMBL	CDS	1413073	1413435	.	-	0	ID=cds1222;Parent=gene1252;Dbxref=UniProtKB/TrEMBL:Q0WHF3,NCBI_GP:CAL19913.1;Name=CAL19913.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19913.1;transl_table=11
AL590842.1	EMBL	gene	1414135	1414623	.	-	.	ID=gene1253;Name=YPO1257;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1257
AL590842.1	EMBL	CDS	1414135	1414623	.	-	0	ID=cds1223;Parent=gene1253;Dbxref=UniProtKB/TrEMBL:Q0WHF2,NCBI_GP:CAL19914.1;Name=CAL19914.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19914.1;transl_table=11
AL590842.1	EMBL	gene	1414636	1415784	.	-	.	ID=gene1254;Name=YPO1258;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1258
AL590842.1	EMBL	CDS	1414636	1415784	.	-	0	ID=cds1224;Parent=gene1254;Dbxref=GOA:Q7CHC3,InterPro:IPR016583,InterPro:IPR024622,UniProtKB/TrEMBL:Q7CHC3,NCBI_GP:CAL19915.1;Name=CAL19915.1;Note=Similar to Escherichia coli hypothetical protein YhhZ SW:YHHZ_ECOLI (P46855) (392 aa) fasta scores: E(): 4.1e-32%2C 36.5%25 id in 323 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19915.1;transl_table=11
AL590842.1	EMBL	gene	1416141	1416524	.	-	.	ID=gene1255;Name=YPO1259;end_range=1416524,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1259;partial=true
AL590842.1	EMBL	CDS	1416141	1416524	.	-	0	ID=cds1225;Parent=gene1255;Dbxref=UniProtKB/TrEMBL:Q0WHF0,NCBI_GP:CAL19916.1;Name=CAL19916.1;Note=Similar to internal region of Escherichia coli O157:H7 EDL933 unknown protein encoded by prophage CP-933C z1843 TR:AAG55940 (EMBL:AE005327) (386 aa) fasta scores: E(): 1.5e-22%2C 56.075%25 id in 107 aa. Probable gene remnant%3B~was marked partial;end_range=1416524,.;gbkey=CDS;inference=similar to sequence:INSDC:AE005327;partial=true;product=putative bacteriophage protein (partial);protein_id=CAL19916.1;transl_table=11
AL590842.1	EMBL	tRNA	1416574	1416650	.	-	.	ID=rna34;Note=tRNA Pro anticodon GGG%2C Cove score 79.79;gbkey=tRNA;product=tRNA-Pro
AL590842.1	EMBL	exon	1416574	1416650	.	-	.	ID=id2865;Parent=rna34;Note=tRNA Pro anticodon GGG%2C Cove score 79.79;gbkey=tRNA;product=tRNA-Pro
AL590842.1	EMBL	gene	1416755	1418551	.	-	.	ID=gene1256;Name=YPO1260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1260
AL590842.1	EMBL	CDS	1416755	1418551	.	-	0	ID=cds1226;Parent=gene1256;Dbxref=GOA:Q7CHC4,InterPro:IPR000917,InterPro:IPR012159,InterPro:IPR017849,InterPro:IPR017850,InterPro:IPR024588,UniProtKB/TrEMBL:Q7CHC4,NCBI_GP:CAL19917.1;Name=CAL19917.1;Note=Similar to Escherichia coli hypothetical protein YejM SW:YEJM_ECOLI (P33922) (586 aa) fasta scores: E(): 0%2C63.3%25 id in 600 aa%2C and to Vibrio cholerae hypothetical protein VC2041 TR:Q9KQF7 (EMBL:AE004278) (600 aa) fasta scores: E(): 0%2C 41.9%25 id in 604 aa.;gbkey=CDS;inference=similar to sequence:INSDC:AE004278;product=putative membrane protein;protein_id=CAL19917.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1416776	1417777	.	-	.	ID=id2866;Note=Pfam match to entry PF00884 Sulfatase%2C Sulfatase%2Cscore 14.20%2C E-value 3.5e-07;gbkey=misc_feature;inference=protein motif:PF00884
AL590842.1	EMBL	sequence_feature	1417982	1418047	.	-	.	ID=id2867;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1418081	1418146	.	-	.	ID=id2868;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1418243	1418296	.	-	.	ID=id2869;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1418312	1418377	.	-	.	ID=id2870;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1418348	1418551	.	-	.	ID=id2871;Note=PS00430 TonB-dependent receptor proteins signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS00430
AL590842.1	EMBL	sequence_feature	1418423	1418488	.	-	.	ID=id2872;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1418579	1418806	.	-	.	ID=gene1257;Name=YPO1261;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1261
AL590842.1	EMBL	CDS	1418579	1418806	.	-	0	ID=cds1227;Parent=gene1257;Dbxref=InterPro:IPR009857,InterPro:IPR023202,NCBI_GP:CAL19918.1;Name=CAL19918.1;Note=Similar to Escherichia coli hypothetical protein YejL SW:YEJL_ECOLI (P33921) (75 aa) fasta scores: E(): 5e-21%2C 80.0%25 id in 75 aa%2C and to Vibrio cholerae hypothetical protein VC2040 TR:Q9KQF8 (EMBL:AE004278) (71 aa) fasta scores: E(): 5.7e-12%2C 54.3%25 id in 70 aa%2C and to Haemophilus influenzae hypothetical protein HI0840 SW:YEJL_HAEIN (P44897) (72 aa) fasta scores: E(): 5.5e-09%2C42.9%25 id in 70 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004278;product=conserved hypothetical protein;protein_id=CAL19918.1;transl_table=11
AL590842.1	EMBL	gene	1418984	1419988	.	+	.	ID=gene1258;Name=YPO1262;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1262
AL590842.1	EMBL	CDS	1418984	1419988	.	+	0	ID=cds1228;Parent=gene1258;Dbxref=GOA:Q8ZGM5,InterPro:IPR007358,NCBI_GP:CAL19919.1;Name=CAL19919.1;Note=Similar to Escherichia coli nucleoid-associated protein YejK SW:NA37_ECOLI (P33920) (334 aa) fasta scores: E(): 0%2C 79.7%25 id in 330 aa%2C and to Vibrio cholerae hypothetical protein VC2039 TR:Q9KQF9 (EMBL:AE004278) (333 aa) fasta scores: E(): 0%2C 54.4%25 id in 331 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004278;product=putative nucleoid-associated protein;protein_id=CAL19919.1;transl_table=11
AL590842.1	EMBL	repeat_region	1420044	1420755	.	+	.	ID=id2873;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	1420189	1420647	.	+	.	ID=gene1259;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO1263
AL590842.1	EMBL	CDS	1420189	1420647	.	+	0	ID=cds1229;Parent=gene1259;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL19920.1;Name=CAL19920.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL19920.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1420243	1420554	.	+	.	ID=id2874;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	1420786	1421070	.	-	.	ID=gene1260;Name=rplY;gbkey=Gene;gene=rplY;gene_biotype=protein_coding;locus_tag=YPO1264
AL590842.1	EMBL	CDS	1420786	1421070	.	-	0	ID=cds1230;Parent=gene1260;Dbxref=GOA:Q8ZGM4,InterPro:IPR011035,InterPro:IPR020055,InterPro:IPR020056,InterPro:IPR029751,NCBI_GP:CAL19921.1;Name=CAL19921.1;Note=Similar to Escherichia coli 50S ribosomal protein L25 RplY SW:RL25_ECOLI (P02426) (94 aa) fasta scores: E(): 2.7e-26%2C 69.9%25 id in 93 aa%2C and to Haemophilus influenzae 50S ribosomal protein L25 RplY SW:RL25_HAEIN (P45281) (95 aa) fasta scores: E(): 2.3e-21%2C 62.9%25 id in 89 aa;gbkey=CDS;gene=rplY;product=50S ribosomal protein L25;protein_id=CAL19921.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1420798	1421061	.	-	.	ID=id2875;Note=Pfam match to entry PF01386 Ribosomal_L25p%2CRibosomal L25p family%2C score 145.30%2C E-value 1e-39;gbkey=misc_feature;gene=rplY;inference=protein motif:PF01386
AL590842.1	EMBL	gene	1421232	1422989	.	-	.	ID=gene1261;Name=YPO1265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1265
AL590842.1	EMBL	CDS	1421232	1422989	.	-	0	ID=cds1231;Parent=gene1261;Dbxref=GOA:Q7CHC7,InterPro:IPR001650,InterPro:IPR006935,InterPro:IPR011332,InterPro:IPR014001,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CHC7,NCBI_GP:CAL19922.1;Name=CAL19922.1;Note=Similar to Escherichia coli hypothetical protein YejH SW:YEJH_ECOLI (P33919) (586 aa) fasta scores: E(): 0%2C78.4%25 id in 584 aa%2C and to Lactobacillus casei bacteriophage A2 hypothetical protein TR:Q9T0Y3 (EMBL:AJ251789) (455 aa) fasta scores: E(): 7.7e-10%2C 27.9%25 id in 373 aa%2C and to Vibrio cholerae helicase-related protein VC1636 TR:Q9KRK4 (EMBL:AE004241) (657 aa) fasta scores: E(): 0%2C 59.8%25 id in 572 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ251789;product=putative DEAD box helicase family protein;protein_id=CAL19922.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1421955	1422215	.	-	.	ID=id2876;Note=Pfam match to entry PF00271 helicase_C%2C Helicases conserved C-terminal domain%2C score 53.30%2C E-value 5.2e-12;gbkey=misc_feature;inference=protein motif:PF00271
AL590842.1	EMBL	sequence_feature	1422531	1422983	.	-	.	ID=id2877;Note=Pfam match to entry PF00270 DEAD%2C DEAD/DEAH box helicase%2C score 31.70%2C E-value 3.9e-09;gbkey=misc_feature;inference=protein motif:PF00270
AL590842.1	EMBL	gene	1423503	1424210	.	+	.	ID=gene1262;Name=rsuA;gbkey=Gene;gene=rsuA;gene_biotype=protein_coding;locus_tag=YPO1266
AL590842.1	EMBL	CDS	1423503	1424210	.	+	0	ID=cds1232;Parent=gene1262;Dbxref=GOA:Q8ZGM2,InterPro:IPR000748,InterPro:IPR002942,InterPro:IPR006145,InterPro:IPR018496,InterPro:IPR020103,NCBI_GP:CAL19923.1;Name=CAL19923.1;Note=Similar to Escherichia coli ribosomal small subunit pseudouridine synthase A RsuA SW:RSUA_ECOLI (P33918) (231 aa) fasta scores: E(): 0%2C 82.2%25 id in 230 aa%2C and to Haemophilus influenzae ribosomal small subunit pseudouridine synthase A RsuA SW:RSUA_HAEIN (P45124) (232 aa) fasta scores: E(): 0%2C 56.4%25 id in 227 aa;gbkey=CDS;gene=rsuA;product=ribosomal small subunit pseudouridine synthase A;protein_id=CAL19923.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1423503	1423643	.	+	.	ID=id2878;Note=Pfam match to entry PF01479 S4%2C S4 domain%2C score 27.00%2C E-value 0.00046;gbkey=misc_feature;gene=rsuA;inference=protein motif:PF01479
AL590842.1	EMBL	sequence_feature	1423683	1424078	.	+	.	ID=id2879;Note=Pfam match to entry PF00849 PseudoU_synth_2%2C RNA pseudouridylate synthase%2C score 93.90%2C E-value 3.3e-24;gbkey=misc_feature;gene=rsuA;inference=protein motif:PF00849
AL590842.1	EMBL	sequence_feature	1423797	1423841	.	+	.	ID=id2880;Note=PS01149 Rsu family of pseudouridine synthase signature.;gbkey=misc_feature;gene=rsuA;inference=protein motif:ProSite:PS01149
AL590842.1	EMBL	gene	1424329	1425528	.	+	.	ID=gene1263;Name=bcr;gbkey=Gene;gene=bcr;gene_biotype=protein_coding;gene_synonym=bicA,bicR,sur,suxA;locus_tag=YPO1267
AL590842.1	EMBL	CDS	1424329	1425528	.	+	0	ID=cds1233;Parent=gene1263;Dbxref=GOA:Q7CHC8,InterPro:IPR004812,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q7CHC8,NCBI_GP:CAL19924.1;Name=CAL19924.1;Note=Similar to Escherichia coli bicyclomycin resistance protein Bcr SW:BCR_ECOLI (P28246) (396 aa) fasta scores: E(): 0%2C 69.2%25 id in 390 aa%2C and to Vibrio cholerae multidrug resistance protein VC1634 TR:Q9KRK6 (EMBL:AE004241) (401 aa) fasta scores: E(): 0%2C 48.1%25 id in 395 aa;gbkey=CDS;gene=bcr;inference=similar to sequence:INSDC:AE004241;product=probable drug resistance translocator protein;protein_id=CAL19924.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1424335	1425525	.	+	.	ID=id2881;Note=Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporter%2C score -52.30%2C E-value 5.6e-05;gbkey=misc_feature;gene=bcr;inference=protein motif:PF00083
AL590842.1	EMBL	sequence_feature	1424347	1424406	.	+	.	ID=id2882;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=bcr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1424476	1424535	.	+	.	ID=id2883;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=bcr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1424554	1424622	.	+	.	ID=id2884;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=bcr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1424632	1424700	.	+	.	ID=id2885;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=bcr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1424737	1424805	.	+	.	ID=id2886;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=bcr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1424815	1424883	.	+	.	ID=id2887;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=bcr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1424983	1425051	.	+	.	ID=id2888;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=bcr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1425079	1425147	.	+	.	ID=id2889;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=bcr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1425184	1425252	.	+	.	ID=id2890;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=bcr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1425265	1425324	.	+	.	ID=id2891;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=bcr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1425361	1425420	.	+	.	ID=id2892;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=bcr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1425433	1425501	.	+	.	ID=id2893;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=bcr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1426495	1426839	.	+	.	ID=gene1264;Name=YPO1269;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1269
AL590842.1	EMBL	CDS	1426495	1426839	.	+	0	ID=cds1234;Parent=gene1264;Dbxref=InterPro:IPR020489,UniProtKB/TrEMBL:Q7CHC9,NCBI_GP:CAL19925.1;Name=CAL19925.1;Note=Similar to Escherichia coli hypothetical protein YejG SW:YEJG_ECOLI (P33917) (114 aa) fasta scores: E(): 5.8e-24%2C 54.4%25 id in 114 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19925.1;transl_table=11
AL590842.1	EMBL	gene	1426900	1428492	.	-	.	ID=gene1265;Name=YPO1270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1270
AL590842.1	EMBL	CDS	1426900	1428492	.	-	0	ID=cds1235;Parent=gene1265;Dbxref=GOA:Q0WHE0,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR013563,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WHE0,NCBI_GP:CAL19926.1;Name=CAL19926.1;Note=N-terminal region of the CDS is similar to the N-terminus of Bacillus subtilis oligopeptide transport ATP-binding protein OppD SW:OPPD_BACSU (P24136) (358 aa) fasta scores: E(): 0%2C 42.3%25 id in 312 aa. Full length CDS is similar to Escherichia coli hypothetical ABC transporter ATP-binding protein YejF SW:YEJF_ECOLI (P33916) (529 aa) fasta scores: E(): 0%2C 71.4%25 id in 528 aa;gbkey=CDS;product=putative ABC transporter ATP-binding subunit;protein_id=CAL19926.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1426987	1427556	.	-	.	ID=id2894;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 212.90%2C E-value 4.8e-60;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1427173	1427217	.	-	.	ID=id2895;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	1427512	1427535	.	-	.	ID=id2896;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1427791	1428387	.	-	.	ID=id2897;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 193.10%2C E-value 4.3e-54;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1427977	1428021	.	-	.	ID=id2898;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	1428343	1428366	.	-	.	ID=id2899;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1428494	1429522	.	-	.	ID=gene1266;Name=YPO1271;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1271
AL590842.1	EMBL	CDS	1428494	1429522	.	-	0	ID=cds1236;Parent=gene1266;Dbxref=GOA:Q7CHD0,InterPro:IPR000515,InterPro:IPR025966,UniProtKB/TrEMBL:Q7CHD0,NCBI_GP:CAL19927.1;Name=CAL19927.1;Note=C-terminus of the CDS is similar to the C-terminal region of Lactococcus lactis (subsp. lactis) oligopeptide transport system permease protein OppC SW:OPPC_LACLA (Q07743) (294 aa) fasta scores: E(): 9.3e-25%2C 34.8%25 id in 227 aa. Full length CDS is similar to Escherichia coli hypothetical ABC transporter permease protein YejE SW:YEJE_ECOLI (P33915) (341 aa) fasta scores: E(): 0%2C 78.5%25 id in 339 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative ABC transporter integral membrane subunit;protein_id=CAL19927.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1428536	1428601	.	-	.	ID=id2900;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1428614	1428844	.	-	.	ID=id2901;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 68.20%2C E-value 1.7e-16;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	1428692	1428757	.	-	.	ID=id2902;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1428755	1428841	.	-	.	ID=id2903;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	1428839	1428904	.	-	.	ID=id2904;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1428917	1428982	.	-	.	ID=id2905;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1429043	1429108	.	-	.	ID=id2906;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1429394	1429459	.	-	.	ID=id2907;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1429522	1430622	.	-	.	ID=gene1267;Name=YPO1272;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1272
AL590842.1	EMBL	CDS	1429522	1430622	.	-	0	ID=cds1237;Parent=gene1267;Dbxref=GOA:Q7CHD1,InterPro:IPR000515,UniProtKB/TrEMBL:Q7CHD1,NCBI_GP:CAL19928.1;Name=CAL19928.1;Note=Similar to Bacillus subtilis oligopeptide transport system permease protein AppB SW:APPB_BACSU (P42062) (317 aa) fasta scores: E(): 8.4e-23%2C 29.9%25 id in 364 aa%2C and to Vibrio cholerae peptide ABC transporter%2C permease protein%2Cputative VCA0590 TR:Q9KLZ9 (EMBL:AE004389) (360 aa) fasta scores: E(): 0%2C 68.6%25 id in 363 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004389;product=putative ABC transporter integral membrane subunit;protein_id=CAL19928.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1429576	1429632	.	-	.	ID=id2908;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1429651	1429869	.	-	.	ID=id2909;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 53.60%2C E-value 4.3e-12;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	1429705	1429770	.	-	.	ID=id2910;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1429882	1429947	.	-	.	ID=id2911;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1430047	1430112	.	-	.	ID=id2912;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1430152	1430217	.	-	.	ID=id2913;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1430530	1430595	.	-	.	ID=id2914;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1430632	1432440	.	-	.	ID=gene1268;Name=YPO1273;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1273
AL590842.1	EMBL	CDS	1430632	1432440	.	-	0	ID=cds1238;Parent=gene1268;Dbxref=GOA:Q7CHD2,InterPro:IPR000914,UniProtKB/TrEMBL:Q7CHD2,NCBI_GP:CAL19929.1;Name=CAL19929.1;Note=Similar to Bacillus subtilis oligopeptide-binding protein AppA SW:APPA_BACSU (P42061) (543 aa) fasta scores: E(): 2.3e-11%2C 23.4%25 id in 556 aa%2C and to Escherichia coli hypothetical protein YejA SW:YEJA_ECOLI (P33913) (604 aa) fasta scores: E(): 0%2C 67.6%25 id in 598 aa;gbkey=CDS;product=putative substrate-binding transport protein;protein_id=CAL19929.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1431190	1431819	.	-	.	ID=id2915;Note=Pfam match to entry PF00496 SBP_bac_5%2C Bacterial extracellular solute-binding proteins%2C family 5%2C score 32.80%2C E-value 2.3e-08;gbkey=misc_feature;inference=protein motif:PF00496
AL590842.1	EMBL	sequence_feature	1432015	1432071	.	-	.	ID=id2916;Note=Pfam match to entry PF00496 SBP_bac_5%2C Bacterial extracellular solute-binding proteins%2C family 5%2C score 6.50%2C E-value 0.49;gbkey=misc_feature;inference=protein motif:PF00496
AL590842.1	EMBL	gene	1432522	1433895	.	-	.	ID=gene1269;Name=YPO1274;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1274
AL590842.1	EMBL	CDS	1432522	1433895	.	-	0	ID=cds1239;Parent=gene1269;Dbxref=InterPro:IPR001633,InterPro:IPR024744,UniProtKB/TrEMBL:Q0WHD6,NCBI_GP:CAL19930.1;Name=CAL19930.1;Note=Similar to Escherichia coli hypothetical protein Rtn SW:RTN_ECOLI (P76446) (518 aa) fasta scores: E(): 0%2C 45.1%25 id in 443 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA3825 TR:AAG07212 (EMBL:AE004800) (526 aa) fasta scores: E(): 0%2C 32.4%25 id in 451 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004800;product=putative membrane protein;protein_id=CAL19930.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1432573	1433310	.	-	.	ID=id2917;Note=Pfam match to entry PF00563 DUF2%2C Domain of unknown function 2%2C score 147.20%2C E-value 2.8e-40;gbkey=misc_feature;inference=protein motif:PF00563
AL590842.1	EMBL	sequence_feature	1433308	1433373	.	-	.	ID=id2918;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1434690	1435274	.	-	.	ID=gene1270;Name=spr;gbkey=Gene;gene=spr;gene_biotype=protein_coding;locus_tag=YPO1275
AL590842.1	EMBL	CDS	1434690	1435274	.	-	0	ID=cds1240;Parent=gene1270;Dbxref=InterPro:IPR000064,UniProtKB/TrEMBL:Q7CHD3,NCBI_GP:CAL19931.1;Name=CAL19931.1;Note=Similar to Escherichia coli lipoprotein Spr SW:SPR_ECOLI (P77685) (188 aa) fasta scores: E(): 0%2C 68.6%25 id in 191 aa%2C and to Haemophilus influenzae probable lipoprotein HI1652 SW:NLPC_HAEIN (P45296) (183 aa) fasta scores: E(): 3.9e-25%2C 41.3%25 id in 184 aa;gbkey=CDS;gene=spr;product=putative lipoprotein;protein_id=CAL19931.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1434714	1435046	.	-	.	ID=id2919;Note=Pfam match to entry PF00877 NLPC_P60%2C NLP/P60 family%2C score 172.60%2C E-value 6.6e-48;gbkey=misc_feature;gene=spr;inference=protein motif:PF00877
AL590842.1	EMBL	sequence_feature	1435194	1435226	.	-	.	ID=id2920;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=spr;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	1435716	1436417	.	-	.	ID=gene1271;Name=YPO1276;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1276
AL590842.1	EMBL	CDS	1435716	1436417	.	-	0	ID=cds1241;Parent=gene1271;Dbxref=GOA:Q7CHD4,InterPro:IPR000326,UniProtKB/TrEMBL:Q7CHD4,NCBI_GP:CAL19932.1;Name=CAL19932.1;Note=Similar to Escherichia coli hypothetical protein YeiU SW:YEIU_ECOLI (P76445) (237 aa) fasta scores: E(): 0%2C62.3%25 id in 231 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA5194 TR:AAG08579 (EMBL:AE004932) (267 aa) fasta scores: E(): 1e-10%2C 28.6%25 id in 227 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004932;product=putative membrane protein;protein_id=CAL19932.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1435779	1435844	.	-	.	ID=id2921;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1435857	1435907	.	-	.	ID=id2922;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1435923	1435979	.	-	.	ID=id2923;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1436073	1436138	.	-	.	ID=id2924;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1436175	1436240	.	-	.	ID=id2925;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1436337	1436402	.	-	.	ID=id2926;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1436476	1437459	.	-	.	ID=gene1272;Name=YPO1277;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1277
AL590842.1	EMBL	CDS	1436476	1437459	.	-	0	ID=cds1242;Parent=gene1272;Dbxref=InterPro:IPR003495,InterPro:IPR011629,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CHD5,NCBI_GP:CAL19933.1;Name=CAL19933.1;Note=Similar to Escherichia coli hypothetical protein YeiR SW:YEIR_ECOLI (P33030) (328 aa) fasta scores: E(): 0%2C67.3%25 id in 324 aa%2C and to Neisseria meningitidis CobW-related protein NMB1263 TR:Q9JZ73 (EMBL:AE002474) (305 aa) fasta scores: E(): 3.9e-27%2C 33.6%25 id in 327 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE002474;product=putative cobalamin synthesis protein;protein_id=CAL19933.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1436545	1437360	.	-	.	ID=id2927;Note=Pfam match to entry PF02492 cobW%2C %2C score 182.10%2CE-value 9.2e-51;gbkey=misc_feature;inference=protein motif:PF02492
AL590842.1	EMBL	sequence_feature	1437412	1437435	.	-	.	ID=id2928;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1437775	1438101	.	+	.	ID=gene1273;Name=YPO1278;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1278
AL590842.1	EMBL	CDS	1437775	1438101	.	+	0	ID=cds1243;Parent=gene1273;Dbxref=UniProtKB/TrEMBL:Q0WHD2,NCBI_GP:CAL19934.1;Name=CAL19934.1;Note=Similar to Escherichia coli hypothetical protein precursor YmdA SW:YMDA_ECOLI (P75917) (103 aa) fasta scores: E(): 0.003%2C 27.3%25 id in 99 aa. Regions of weak similarity to fimbrial proteins e%2Cg. Escherichia coli F17A fimbrial subunit precursor F17A TR:Q9R360 (EMBL:AF055309) (181 aa) fasta scores: E(): 0.68%2C 28.8%25 id in 66 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF055309;product=putative membrane protein;protein_id=CAL19934.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1437778	1437846	.	+	.	ID=id2929;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1438210	1439010	.	+	.	ID=gene1274;Name=YPO1279;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1279
AL590842.1	EMBL	CDS	1438210	1439010	.	+	0	ID=cds1244;Parent=gene1274;Dbxref=GOA:Q7CHD6,InterPro:IPR000524,InterPro:IPR008920,InterPro:IPR011711,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CHD6,NCBI_GP:CAL19935.1;Name=CAL19935.1;Note=Similar to Escherichia coli Uxu operon transcriptional regulator UxuR SW:UXUR_ECOLI (P39161) (257 aa) fasta scores: E(): 0%2C 52.9%25 id in 244 aa%2C and to Erwinia chrysanthemi Exu regulon transcriptional regulator ExuR SW:EXUR_ERWCH (Q9X9E0) (259 aa) fasta scores: E(): 0%2C44.9%25 id in 245 aa;gbkey=CDS;product=putative transcriptional regulatory protein;protein_id=CAL19935.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1438285	1438464	.	+	.	ID=id2930;Note=Pfam match to entry PF00392 gntR%2C Bacterial regulatory proteins%2C gntR family%2C score 97.80%2C E-value 1.1e-28;gbkey=misc_feature;inference=protein motif:PF00392
AL590842.1	EMBL	sequence_feature	1438342	1438416	.	+	.	ID=id2931;Note=PS00043 Bacterial regulatory proteins%2C gntR family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00043
AL590842.1	EMBL	gene	1439154	1440626	.	-	.	ID=gene1275;Name=YPO1280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1280
AL590842.1	EMBL	CDS	1439154	1440626	.	-	0	ID=cds1245;Parent=gene1275;Dbxref=GOA:Q7CHD7,InterPro:IPR000669,InterPro:IPR008927,InterPro:IPR013118,InterPro:IPR013131,InterPro:IPR013328,InterPro:IPR016040,InterPro:IPR023027,UniProtKB/TrEMBL:Q7CHD7,NCBI_GP:CAL19936.1;Name=CAL19936.1;Note=Similar to Escherichia coli hypothetical protein YeiQ SW:YEIQ_ECOLI (P33029) (488 aa) fasta scores: E(): 0%2C64.0%25 id in 483 aa%2C and to Escherichia coli D-mannonate oxidoreductase UxuB SW:UXUB_ECOLI (P39160) (486 aa) fasta scores: E(): 0%2C 59.1%25 id in 489 aa%2C and to Pseudomonas aeruginosa mannitol dehydrogenase MtlD TR:AAG05730 (EMBL:AE004660) (491 aa) fasta scores: E(): 0%2C 42.5%25 id in 482 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004660;product=putative D-mannonate oxidoreductase;protein_id=CAL19936.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1439283	1440554	.	-	.	ID=id2932;Note=Pfam match to entry PF01232 Mannitol_dh%2C Mannitol dehydrogenase%2C score 703.10%2C E-value 1.3e-207;gbkey=misc_feature;inference=protein motif:PF01232
AL590842.1	EMBL	sequence_feature	1439937	1439975	.	-	.	ID=id2933;Note=PS00974 Mannitol dehydrogenases signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00974
AL590842.1	EMBL	gene	1441211	1442404	.	+	.	ID=gene1276;Name=uxuA;gbkey=Gene;gene=uxuA;gene_biotype=protein_coding;locus_tag=YPO1283
AL590842.1	EMBL	CDS	1441211	1442404	.	+	0	ID=cds1246;Parent=gene1276;Dbxref=GOA:Q8ZGK8,InterPro:IPR004628,InterPro:IPR013022,NCBI_GP:CAL19937.1;Name=CAL19937.1;Note=Similar to Escherichia coli mannonate dehydratase UxuA SW:UXUA_ECOLI (P24215) (394 aa) fasta scores: E(): 0%2C78.6%25 id in 392 aa%2C and to Haemophilus influenzae mannonate dehydratase UxuA SW:UXUA_HAEIN (P44488) (394 aa) fasta scores: E(): 0%2C 72.2%25 id in 392 aa;gbkey=CDS;gene=uxuA;product=mannonate dehydratase;protein_id=CAL19937.1;transl_table=11
AL590842.1	EMBL	gene	1442544	1443116	.	-	.	ID=gene1277;Name=YPO1284;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1284
AL590842.1	EMBL	CDS	1442544	1443116	.	-	0	ID=cds1247;Parent=gene1277;Dbxref=GOA:Q8ZGK7,InterPro:IPR001059,InterPro:IPR008991,InterPro:IPR011897,InterPro:IPR012340,InterPro:IPR013185,InterPro:IPR013852,InterPro:IPR014722,InterPro:IPR015365,InterPro:IPR020599,NCBI_GP:CAL19938.1;Name=CAL19938.1;Note=C-terminal region is similar to similar to Synechococcus sp elongation factor P Efp SW:EFP_SYNP7 (Q54760) (185 aa) fasta scores: E(): 3.4e-17%2C 31.9%25 id in 188 aa. Similar to the C-terminal region of Escherichia coli hypothetical protein YeiP SW:YEIP_ECOLI (P33028) (275 aa) fasta scores: E(): 0%2C 78.0%25 id in 205 aa. Possible alternative translational start sites.;gbkey=CDS;product=putative elongation factor P;protein_id=CAL19938.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1442550	1443116	.	-	.	ID=id2934;Note=Pfam match to entry PF01132 EFP%2C Elongation factor P (EF-P)%2C score 328.20%2C E-value 9.2e-95;gbkey=misc_feature;inference=protein motif:PF01132
AL590842.1	EMBL	sequence_feature	1442598	1442657	.	-	.	ID=id2935;Note=PS01275 Elongation factor P signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01275
AL590842.1	EMBL	gene	1443220	1444464	.	-	.	ID=gene1278;Name=mtr;gbkey=Gene;gene=mtr;gene_biotype=protein_coding;locus_tag=YPO1285
AL590842.1	EMBL	CDS	1443220	1444464	.	-	0	ID=cds1248;Parent=gene1278;Dbxref=GOA:Q7CHD8,InterPro:IPR002091,InterPro:IPR006311,InterPro:IPR013059,InterPro:IPR018227,UniProtKB/TrEMBL:Q7CHD8,NCBI_GP:CAL19939.1;Name=CAL19939.1;Note=Similar to Escherichia coli tryptophan-specific transport protein Mtr SW:MTR_ECOLI (P22306) (414 aa) fasta scores: E(): 0%2C 57.9%25 id in 411 aa%2C and to Pseudomonas aeruginosa tryptophan permease Mtr TR:AAG08819 (EMBL:AE004956) (417 aa) fasta scores: E(): 0%2C 59.2%25 id in 417 aa;gbkey=CDS;gene=mtr;inference=similar to sequence:INSDC:AE004956;product=putative tryptophan-specific transport protein;protein_id=CAL19939.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1443229	1444452	.	-	.	ID=id2936;Note=Pfam match to entry PF00324 aa_permeases%2C Amino acid permease%2C score -299.90%2C E-value 0.14;gbkey=misc_feature;gene=mtr;inference=protein motif:PF00324
AL590842.1	EMBL	sequence_feature	1443241	1443306	.	-	.	ID=id2937;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=mtr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1443370	1443435	.	-	.	ID=id2938;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=mtr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1443724	1443789	.	-	.	ID=id2939;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=mtr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1443829	1443894	.	-	.	ID=id2940;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=mtr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1443940	1444005	.	-	.	ID=id2941;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=mtr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1444027	1444092	.	-	.	ID=id2942;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=mtr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1444138	1444203	.	-	.	ID=id2943;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=mtr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1444282	1444347	.	-	.	ID=id2944;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=mtr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1444360	1444425	.	-	.	ID=id2945;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=mtr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1444839	1445093	.	+	.	ID=gene1279;Name=YPO1286;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1286
AL590842.1	EMBL	CDS	1444839	1445093	.	+	0	ID=cds1249;Parent=gene1279;Dbxref=InterPro:IPR005358,UniProtKB/TrEMBL:Q7CHD9,NCBI_GP:CAL19940.1;Name=CAL19940.1;Note=Similar to Vibrio cholerae putative proteinase inhibitor VC1057 TR:Q9KT48 (EMBL:AE004187) (83 aa) fasta scores: E(): 3e-17%2C 56.1%25 id in 82 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004187;product=conserved hypothetical protein;protein_id=CAL19940.1;transl_table=11
AL590842.1	EMBL	gene	1445162	1445977	.	-	.	ID=gene1280;Name=YPO1287;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1287
AL590842.1	EMBL	CDS	1445162	1445977	.	-	0	ID=cds1250;Parent=gene1280;Dbxref=GOA:Q7CHE0,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:Q7CHE0,NCBI_GP:CAL19941.1;Name=CAL19941.1;Note=Similar to Gluconobacter oxydans gluconate 5-dehydrogenase Gno SW:GNO_GLUOX (P50199) (256 aa) fasta scores: E(): 9e-27%2C 37.5%25 id in 256 aa%2C and to Thermotoga maritima oxidoreductase%2C short chain dehydrogenase/reductase family TM0297 TR:Q9WYD3 (EMBL:AE001711) (257 aa) fasta scores: E(): 5.4e-32%2C 48.4%25 id in 248 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE001711;product=putative short chain oxidoreductase;protein_id=CAL19941.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1445186	1445278	.	-	.	ID=id2946;Note=Pfam match to entry PF00678 adh_short_C2%2C Short chain dehydrogenase/reductase C-terminus%2C score 46.40%2CE-value 1.6e-11;gbkey=misc_feature;inference=protein motif:PF00678
AL590842.1	EMBL	sequence_feature	1445342	1445890	.	-	.	ID=id2947;Note=Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase%2C score 239.50%2C E-value 4.7e-68;gbkey=misc_feature;inference=protein motif:PF00106
AL590842.1	EMBL	sequence_feature	1445405	1445491	.	-	.	ID=id2948;Note=PS00061 Short-chain dehydrogenases/reductases family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00061
AL590842.1	EMBL	gene	1445988	1446953	.	-	.	ID=gene1281;Name=YPO1288;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1288
AL590842.1	EMBL	CDS	1445988	1446953	.	-	0	ID=cds1251;Parent=gene1281;Dbxref=GOA:Q7CHE1,InterPro:IPR006139,InterPro:IPR006140,InterPro:IPR016040,InterPro:IPR029753,UniProtKB/TrEMBL:Q7CHE1,NCBI_GP:CAL19942.1;Name=CAL19942.1;Note=Similar to Streptomyces coelicolor putative dehydrogenase SCE65.14C TR:Q9RKF9 (EMBL:AL133236) (344 aa) fasta scores: E(): 0%2C 35.7%25 id in 297 aa%2C and to Bacillus subtilis D-3-phosphoglycerate dehydrogenase SerA SW:SERA_BACSU (P35136) (525 aa) fasta scores: E(): 5.7e-31%2C36.1%25 id in 291 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL133236;product=putative D-isomer specific 2-hydroxyacid dehydrogenase family protein;protein_id=CAL19942.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1446093	1446716	.	-	.	ID=id2949;Note=Pfam match to entry PF00389 2-Hacid_DH%2C D-isomer specific 2-hydroxyacid dehydrogenases%2C score 201.90%2CE-value 2.3e-82;gbkey=misc_feature;inference=protein motif:PF00389
AL590842.1	EMBL	sequence_feature	1446222	1446272	.	-	.	ID=id2950;Note=PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3.;gbkey=misc_feature;inference=protein motif:ProSite:PS00671
AL590842.1	EMBL	sequence_feature	1446291	1446359	.	-	.	ID=id2951;Note=PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00670
AL590842.1	EMBL	gene	1446950	1448092	.	-	.	ID=gene1282;Name=YPO1289;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1289
AL590842.1	EMBL	CDS	1446950	1448092	.	-	0	ID=cds1252;Parent=gene1282;Dbxref=GOA:Q7CHE2,InterPro:IPR002529,InterPro:IPR011234,UniProtKB/TrEMBL:Q7CHE2,NCBI_GP:CAL19943.1;Name=CAL19943.1;Note=Similar to Streptomyces coelicolor hypothetical protein SCF41.20c TR:Q9RJU9 (EMBL:AL117387) (390 aa) fasta scores: E(): 0%2C 54.7%25 id in 380 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL117387;product=conserved hypothetical protein;protein_id=CAL19943.1;transl_table=11
AL590842.1	EMBL	gene	1448444	1449940	.	+	.	ID=gene1283;Name=YPO1290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1290
AL590842.1	EMBL	CDS	1448444	1449940	.	+	0	ID=cds1253;Parent=gene1283;Dbxref=GOA:Q7CHE3,InterPro:IPR015590,InterPro:IPR016160,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,UniProtKB/TrEMBL:Q7CHE3,NCBI_GP:CAL19944.1;Name=CAL19944.1;Note=Similar to Escherichia coli succinate-semialdehyde dehydrogenase GabD SW:GABD_ECOLI (P25526) (482 aa) fasta scores: E(): 0%2C 43.4%25 id in 470 aa%2C and to Pseudomonas aeruginosa succinate-semialdehyde dehydrogenase GabD TR:AAG03654 (EMBL:AE004464) (483 aa) fasta scores: E(): 0%2C43.3%25 id in 487 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004464;product=putative aldehyde dehydrogenase;protein_id=CAL19944.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1448522	1449925	.	+	.	ID=id2952;Note=Pfam match to entry PF00171 aldedh%2C Aldehyde dehydrogenase family%2C score 598.70%2C E-value 3.6e-176;gbkey=misc_feature;inference=protein motif:PF00171
AL590842.1	EMBL	sequence_feature	1449308	1449343	.	+	.	ID=id2953;Note=PS00070 Aldehyde dehydrogenases cysteine active site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00070
AL590842.1	EMBL	gene	1449944	1451497	.	+	.	ID=gene1284;Name=YPO1291;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1291
AL590842.1	EMBL	CDS	1449944	1451497	.	+	0	ID=cds1254;Parent=gene1284;Dbxref=GOA:Q7CHE4,InterPro:IPR006000,InterPro:IPR018483,InterPro:IPR018484,InterPro:IPR018485,UniProtKB/TrEMBL:Q7CHE4,NCBI_GP:CAL19945.1;Name=CAL19945.1;Note=Similar to Thermoanaerobacter ethanolicus xylulose kinase XylB TR:O30364 (EMBL:AF001974) (500 aa) fasta scores: E(): 0%2C 40.7%25 id in 511 aa%2C and to Bacillus subtilis xylulose kinase XylB SW:XYLB_BACSU (P39211) (499 aa) fasta scores: E(): 0%2C 36.6%25 id in 517 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF001974;product=putative carbohydrate kinase;protein_id=CAL19945.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1450175	1451305	.	+	.	ID=id2954;Note=Pfam match to entry PF00370 FGGY%2C FGGY family of carbohydrate kinases%2C score 411.90%2C E-value 5.9e-120;gbkey=misc_feature;inference=protein motif:PF00370
AL590842.1	EMBL	sequence_feature	1450334	1450372	.	+	.	ID=id2955;Note=PS00933 FGGY family of carbohydrate kinases signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS00933
AL590842.1	EMBL	sequence_feature	1451057	1451119	.	+	.	ID=id2956;Note=PS00445 FGGY family of carbohydrate kinases signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00445
AL590842.1	EMBL	gene	1451517	1452227	.	+	.	ID=gene1285;Name=rpiA;gbkey=Gene;gene=rpiA;gene_biotype=protein_coding;locus_tag=YPO1292
AL590842.1	EMBL	CDS	1451517	1452227	.	+	0	ID=cds1255;Parent=gene1285;Dbxref=GOA:Q8ZGJ9,InterPro:IPR004788,InterPro:IPR020672,NCBI_GP:CAL19946.1;Name=CAL19946.1;Note=Similar to Methanobacterium thermoautotrophicum probable ribose 5-phosphate isomerase RpiA or NTH608 SW:RPIA_METTH (P72012) (226 aa) fasta scores: E(): 2.7e-28%2C40.5%25 id in 222 aa%2C and to Mus musculus ribose 5-phosphate isomerase RpiA or Rpi SW:RPIA_MOUSE (P47968) (236 aa) fasta scores: E(): 2.7e-22%2C 34.7%25 id in 236 aa;gbkey=CDS;gene=rpiA;product=putative ribose 5-phosphate isomerase;protein_id=CAL19946.1;transl_table=11
AL590842.1	EMBL	gene	1452359	1453447	.	+	.	ID=gene1286;Name=YPO1293;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1293
AL590842.1	EMBL	CDS	1452359	1453447	.	+	0	ID=cds1256;Parent=gene1286;Dbxref=InterPro:IPR006311,InterPro:IPR025997,InterPro:IPR028082,UniProtKB/TrEMBL:Q7CHE5,NCBI_GP:CAL19947.1;Name=CAL19947.1;Note=Weakly similar to Vibrio cholerae ribose ABC transporter%2C periplasmic D-ribose-binding protein VCA0130 TR:Q9KN35 (EMBL:AE004354) (294 aa) fasta scores: E(): 8.6e-10%2C 29.0%25 id in 293 aa%2C and to Escherichia coli D-ribose-binding periplasmic protein precursor RbsB SW:RBSB_ECOLI (P02925) (296 aa) fasta scores: E(): 3.3e-09%2C26.5%25 id in 287 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004354;product=putative periplasmic carbohydrate-binding transport protein;protein_id=CAL19947.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1452395	1452454	.	+	.	ID=id2957;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1453556	1455130	.	+	.	ID=gene1287;Name=YPO1294;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1294
AL590842.1	EMBL	CDS	1453556	1455130	.	+	0	ID=cds1257;Parent=gene1287;Dbxref=GOA:Q7CHE6,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CHE6,NCBI_GP:CAL19948.1;Name=CAL19948.1;Note=Similar to Escherichia coli ribose transport ATP-binding protein RbsA SW:RBSA_ECOLI (P04983) (501 aa) fasta scores: E(): 0%2C 33.2%25 id in 497 aa%2C and to Streptomyces coelicolor ABC transporter protein%2C ATP binding component SCC57A.17 TR:Q9RDI1 (EMBL:AL136519) (517 aa) fasta scores: E(): 0%2C 36.6%25 id in 492 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL136519;product=putative ABC transport ATP-binding subunit;protein_id=CAL19948.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1453739	1454293	.	+	.	ID=id2958;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 130.40%2C E-value 3.4e-35;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1453760	1453783	.	+	.	ID=id2959;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1454480	1455061	.	+	.	ID=id2960;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 85.50%2C E-value 1.1e-21;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1454834	1454878	.	+	.	ID=id2961;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	1455166	1456164	.	+	.	ID=gene1288;Name=YPO1295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1295
AL590842.1	EMBL	CDS	1455166	1456164	.	+	0	ID=cds1258;Parent=gene1288;Dbxref=GOA:Q7CHE7,InterPro:IPR001851,UniProtKB/TrEMBL:Q7CHE7,NCBI_GP:CAL19949.1;Name=CAL19949.1;Note=Similar to Bacillus subtilis ribose membrane transport protein RbsC TR:P96731 (EMBL:Z92953) (322 aa) fasta scores: E(): 1.6e-28%2C 35.6%25 id in 292 aa%2C and to Streptomyces coelicolor bifunctional carbohydrate binding and transport protein SCC7A.18 TR:Q9RDI0 (EMBL:AL136519) (651 aa) fasta scores: E(): 4.5e-30%2C 39.2%25 id in 293 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z92953;product=putative ABC transport integral membrane subunit;protein_id=CAL19949.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1455256	1455324	.	+	.	ID=id2962;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1455358	1455426	.	+	.	ID=id2963;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1455484	1455552	.	+	.	ID=id2964;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1455571	1455630	.	+	.	ID=id2965;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1455688	1455756	.	+	.	ID=id2966;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1455847	1455915	.	+	.	ID=id2967;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1455943	1455999	.	+	.	ID=id2968;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1456018	1456077	.	+	.	ID=id2969;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1456090	1456158	.	+	.	ID=id2970;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1456277	1456798	.	-	.	ID=gene1289;Name=YPO1296;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1296
AL590842.1	EMBL	CDS	1456277	1456798	.	-	0	ID=cds1259;Parent=gene1289;Dbxref=GOA:Q0WHB6,InterPro:IPR000086,InterPro:IPR015797,InterPro:IPR020084,InterPro:IPR020476,UniProtKB/TrEMBL:Q0WHB6,NCBI_GP:CAL19950.1;Name=CAL19950.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA2769 TR:AAG06157 (EMBL:AE004704) (136 aa) fasta scores: E(): 6.9e-14%2C 41.3%25 id in 138 aa%2C and to Streptomyces coelicolor putative Mut-like protein SCD10.05c TR:Q9K3X1 (EMBL:AL359988) (184 aa) fasta scores: E(): 1.5e-07%2C 37.7%25 id in 114 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL359988;product=putative Mut family protein;protein_id=CAL19950.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1456334	1456726	.	-	.	ID=id2971;Note=Pfam match to entry PF00293 mutT%2C Bacterial mutT protein%2C score 99.80%2C E-value 5.5e-26;gbkey=misc_feature;inference=protein motif:PF00293
AL590842.1	EMBL	sequence_feature	1456568	1456627	.	-	.	ID=id2972;Note=PS00893 mutT domain signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00893
AL590842.1	EMBL	gene	1456994	1458127	.	+	.	ID=gene1290;Name=fpr;gbkey=Gene;gene=fpr;gene_biotype=protein_coding;gene_synonym=fruB,fruF;locus_tag=YPO1298
AL590842.1	EMBL	CDS	1456994	1458127	.	+	0	ID=cds1260;Parent=gene1290;Dbxref=GOA:Q7CHE8,InterPro:IPR000032,InterPro:IPR001020,InterPro:IPR002114,InterPro:IPR002178,InterPro:IPR016152,UniProtKB/TrEMBL:Q7CHE8,NCBI_GP:CAL19951.1;Name=CAL19951.1;Note=Similar to Salmonella typhimurium PTS system%2Cfructose-specific IIa/FPr component FruB SW:PTFA_SALTY (P17127) (376 aa) fasta scores: E(): 0%2C 71.0%25 id in 376 aa%2Cand to Escherichia coli PTS system%2C fructose-specific IIa/FPr component FruB SW:PTFA_ECOLI (P24217) (376 aa) fasta scores: E(): 0%2C 69.4%25 id in 376 aa;gbkey=CDS;gene=fpr;product=CAL19951.1;protein_id=CAL19951.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1457054	1457239	.	+	.	ID=id2973;Note=Pfam match to entry PF00359 PTS_EIIA_2%2Cphosphoenolpyruvate-dependent sugar phosphotransferase system%2C EIIA 2%2C score 108.90%2C E-value 2.9e-29;gbkey=misc_feature;gene=fpr;inference=protein motif:PF00359
AL590842.1	EMBL	sequence_feature	1457132	1457182	.	+	.	ID=id2974;Note=PS00372 PTS EIIA domains phosphorylation site signature 2.;gbkey=misc_feature;gene=fpr;inference=protein motif:ProSite:PS00372
AL590842.1	EMBL	sequence_feature	1457846	1458085	.	+	.	ID=id2975;Note=Pfam match to entry PF00381 PTS-HPr%2C PTS HPr component phosphorylation sites%2C score 155.80%2C E-value 7.5e-43;gbkey=misc_feature;gene=fpr;inference=protein motif:PF00381
AL590842.1	EMBL	sequence_feature	1457882	1457905	.	+	.	ID=id2976;Note=PS00369 PTS HPR component histidine phosphorylation site signature.;gbkey=misc_feature;gene=fpr;inference=protein motif:ProSite:PS00369
AL590842.1	EMBL	sequence_feature	1457969	1458016	.	+	.	ID=id2977;Note=PS00589 PTS HPR component serine phosphorylation site signature.;gbkey=misc_feature;gene=fpr;inference=protein motif:ProSite:PS00589
AL590842.1	EMBL	gene	1458124	1459062	.	+	.	ID=gene1291;Name=fpk;gbkey=Gene;gene=fpk;gene_biotype=protein_coding;gene_synonym=fruK;locus_tag=YPO1299
AL590842.1	EMBL	CDS	1458124	1459062	.	+	0	ID=cds1261;Parent=gene1291;Dbxref=GOA:Q7CHE9,InterPro:IPR002173,InterPro:IPR011611,InterPro:IPR017583,InterPro:IPR022463,InterPro:IPR029056,UniProtKB/TrEMBL:Q7CHE9,NCBI_GP:CAL19952.1;Name=CAL19952.1;Note=Similar to Escherichia coli 1-phosphofructokinase FruK or Fpk SW:K1PF_ECOLI (P23539) (312 aa) fasta scores: E(): 0%2C 92.0%25 id in 312 aa%2C and to Haemophilus influenzae 1-phosphofructokinase FruK SW:K1PF_HAEIN (P44330) (313 aa) fasta scores: E(): 0%2C 55.4%25 id in 305 aa;gbkey=CDS;gene=fpk;product=1-phosphofructokinase;protein_id=CAL19952.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1458238	1458903	.	+	.	ID=id2978;Note=Pfam match to entry PF00294 pfkB%2C pfkB family carbohydrate kinase%2C score 200.20%2C E-value 3.2e-56;gbkey=misc_feature;gene=fpk;inference=protein motif:PF00294
AL590842.1	EMBL	sequence_feature	1458238	1458312	.	+	.	ID=id2979;Note=PS00583 pfkB family of carbohydrate kinases signature 1.;gbkey=misc_feature;gene=fpk;inference=protein motif:ProSite:PS00583
AL590842.1	EMBL	sequence_feature	1458868	1458909	.	+	.	ID=id2980;Note=PS00584 pfkB family of carbohydrate kinases signature 2.;gbkey=misc_feature;gene=fpk;inference=protein motif:ProSite:PS00584
AL590842.1	EMBL	gene	1459077	1460777	.	+	.	ID=gene1292;Name=fruA;gbkey=Gene;gene=fruA;gene_biotype=protein_coding;gene_synonym=ptsF;locus_tag=YPO1300
AL590842.1	EMBL	CDS	1459077	1460777	.	+	0	ID=cds1262;Parent=gene1292;Dbxref=GOA:Q7CHF0,InterPro:IPR003352,InterPro:IPR003353,InterPro:IPR003501,InterPro:IPR006327,InterPro:IPR013011,InterPro:IPR013014,UniProtKB/TrEMBL:Q7CHF0,NCBI_GP:CAL19953.1;Name=CAL19953.1;Note=Similar to Escherichia coli PTS system%2Cfructose-specific IIBC component FruA or PtsF SW:PTFB_ECOLI (P20966) (563 aa) fasta scores: E(): 0%2C 77.2%25 id in 569 aa%2Cand to Vibrio cholerae PTS system%2C fructose-specific IIBC component VCA0516 TR:Q9KM72 (EMBL:AE004382) (580 aa) fasta scores: E(): 0%2C 65.7%25 id in 531 aa;gbkey=CDS;gene=fruA;inference=similar to sequence:INSDC:AE004382;product=PTS system%2C fructose-specific IIBC component;protein_id=CAL19953.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1459407	1459712	.	+	.	ID=id2981;Note=Pfam match to entry PF02379 PTS_IIB_fruc%2C %2C score 209.70%2C E-value 4.4e-59;gbkey=misc_feature;gene=fruA;inference=protein motif:PF02379
AL590842.1	EMBL	sequence_feature	1459785	1460576	.	+	.	ID=id2982;Note=Pfam match to entry PF02378 PTS_EIIC%2C %2C score 244.70%2C E-value 1.3e-69;gbkey=misc_feature;gene=fruA;inference=protein motif:PF02378
AL590842.1	EMBL	sequence_feature	1459797	1459865	.	+	.	ID=id2983;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=fruA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1459902	1459970	.	+	.	ID=id2984;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=fruA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1459998	1460066	.	+	.	ID=id2985;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=fruA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1460124	1460192	.	+	.	ID=id2986;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=fruA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1460220	1460288	.	+	.	ID=id2987;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=fruA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1460325	1460393	.	+	.	ID=id2988;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=fruA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1460481	1460534	.	+	.	ID=id2989;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=fruA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1460553	1460621	.	+	.	ID=id2990;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=fruA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1460664	1460732	.	+	.	ID=id2991;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=fruA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1461102	1461746	.	+	.	ID=gene1293;Name=psaE;gbkey=Gene;gene=psaE;gene_biotype=protein_coding;locus_tag=YPO1301
AL590842.1	EMBL	CDS	1461102	1461746	.	+	0	ID=cds1263;Parent=gene1293;Dbxref=GOA:P68588,InterPro:IPR001867,InterPro:IPR011991,InterPro:IPR016032,NCBI_GP:CAL19954.1;Name=CAL19954.1;Note=Previously sequenced as Yersinia pestis%2C and Yersinia pseudotuberculosis PsaE protein%2C possible pH6 antigen regulator SW:PSAE_YERPE (P31524) (214 aa) fasta scores: E(): 0%2C 100.0%25 id in 214 aa. Similar to to Yersinia enterocolitica surface antigen regulatory protein MyfE TR:Q56848 (EMBL:AJ131728) (221 aa) fasta scores: E(): 0%2C52.9%25 id in 221 aa;gbkey=CDS;gene=psaE;inference=similar to sequence:INSDC:AJ131728;product=putative regulatory protein;protein_id=CAL19954.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1461156	1461368	.	+	.	ID=id2992;Note=Pfam match to entry PF00486 trans_reg_C%2CTranscriptional regulatory protein%2C C terminal%2C score 25.60%2C E-value 2.9e-06;gbkey=misc_feature;gene=psaE;inference=protein motif:PF00486
AL590842.1	EMBL	sequence_feature	1461498	1461566	.	+	.	ID=id2993;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=psaE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1461743	1462231	.	+	.	ID=gene1294;Name=psaF;gbkey=Gene;gene=psaF;gene_biotype=protein_coding;locus_tag=YPO1302
AL590842.1	EMBL	CDS	1461743	1462231	.	+	0	ID=cds1264;Parent=gene1294;Dbxref=NCBI_GP:CAL19955.1;Name=CAL19955.1;Note=Previously sequenced as Yersinia pestis PsaF protein SW:PSAF_YERPE (Q56978) (162 aa) fasta scores: E(): 0%2C100.0%25 id in 162 aa%2C and similar to Yersinia enterocolitica MyfF TR:Q56849 (EMBL:U12766) (163 aa) fasta scores: E(): 0%2C54.3%25 id in 162 aa. Predicted to be anchored to the inner membrane with the majority of the protein in the periplasmic space. Possible involvememnt in the regulation of pH 6 antigen expression.;gbkey=CDS;gene=psaF;inference=similar to sequence:INSDC:U12766;product=putative membrane protein;protein_id=CAL19955.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1461761	1461829	.	+	.	ID=id2994;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=psaF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1462776	1463252	.	+	.	ID=gene1295;Name=psaA;gbkey=Gene;gene=psaA;gene_biotype=protein_coding;locus_tag=YPO1303
AL590842.1	EMBL	CDS	1462776	1463252	.	+	0	ID=cds1265;Parent=gene1295;Dbxref=GOA:P31522,PDB:4F8L,PDB:4F8N,PDB:4F8O,PDB:4F8P,NCBI_GP:CAL19956.1;Name=CAL19956.1;Note=Previously sequenced as Yersinia pestis pH 6 antigen precursor PsaA SW:PSAA_YERPE (P31522) (158 aa) fasta scores: E(): 0%2C 100.0%25 id in 158 aa. Similar to Yersinia enterocolitica fimbrial protein MyfA SW:MYFA_YEREN (P33406) (159 aa) fasta scores: E(): 1.8e-22%2C 45.7%25 id in 162 aa;gbkey=CDS;gene=psaA;product=pH 6 antigen precursor (antigen 4) (adhesin);protein_id=CAL19956.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1462806	1462838	.	+	.	ID=id2995;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=psaA;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	1463379	1464200	.	+	.	ID=gene1296;Name=psaB;gbkey=Gene;gene=psaB;gene_biotype=protein_coding;locus_tag=YPO1304
AL590842.1	EMBL	CDS	1463379	1464200	.	+	0	ID=cds1266;Parent=gene1296;Dbxref=GOA:P69965,InterPro:IPR001829,InterPro:IPR008962,InterPro:IPR016147,InterPro:IPR016148,InterPro:IPR018046,NCBI_GP:CAL19957.1;Name=CAL19957.1;Note=Required for the biogenesis of pH 6 antigen. Previously sequenced as Yersinia pestis%2C and Yersinia pseudotuberculosis chaperone protein PsaB precursor SW:PSAB_YERPE (P31523) (273 aa) fasta scores: E(): 0%2C100.0%25 id in 273 aa. Similar to Escherichia coli chaperone protein AfaB precursor SW:AFAB_ECOLI (P53516) (247 aa) fasta scores: E(): 0%2C 40.9%25 id in 254 aa%2C and to Yersinia pestis F1 capsule Caf1M TR:O68774 (EMBL:AF074611) (269 aa) fasta scores: E(): 1.6e-32%2C 41.4%25 id in 261 aa;gbkey=CDS;gene=psaB;inference=similar to sequence:INSDC:AF074611;product=chaperone protein PsaB precursor;protein_id=CAL19957.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1463412	1463471	.	+	.	ID=id2996;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=psaB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1463526	1464164	.	+	.	ID=id2997;Note=Pfam match to entry PF00345 pili_assembly%2CGram-negative pili assembly chaperone%2C score 382.00%2CE-value 9.4e-112;gbkey=misc_feature;gene=psaB;inference=protein motif:PF00345
AL590842.1	EMBL	sequence_feature	1463727	1463780	.	+	.	ID=id2998;Note=PS00635 Gram-negative pili assembly chaperone signature.;gbkey=misc_feature;gene=psaB;inference=protein motif:ProSite:PS00635
AL590842.1	EMBL	gene	1464242	1466755	.	+	.	ID=gene1297;Name=psaC;gbkey=Gene;gene=psaC;gene_biotype=protein_coding;locus_tag=YPO1305
AL590842.1	EMBL	CDS	1464242	1466755	.	+	0	ID=cds1267;Parent=gene1297;Dbxref=GOA:P31527,InterPro:IPR000015,InterPro:IPR018030,InterPro:IPR025885,InterPro:IPR025949,NCBI_GP:CAL19958.1;Name=CAL19958.1;Note=Previously sequenced as Yersinia pestis outer membrane usher protein PsaC SW:PSAC_YERPE (P31527) (822 aa) fasta scores: E(): 0%2C 98.1%25 id in 823 aa. Similar to Escherichia coli outer membrane usher protein AfaC SW:AFAC_ECOLI (P53517) (859 aa) fasta scores: E(): 0%2C 42.8%25 id in 838 aa;gbkey=CDS;gene=psaC;product=outer membrane usher protein PsaC precursor;protein_id=CAL19958.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1464317	1466701	.	+	.	ID=id2999;Note=Pfam match to entry PF00577 Usher%2C Fimbrial Usher proteins%2C score 1295.30%2C E-value 0;gbkey=misc_feature;gene=psaC;inference=protein motif:PF00577
AL590842.1	EMBL	sequence_feature	1465145	1465177	.	+	.	ID=id3000;Note=PS01151 Fimbrial biogenesis outer membrane usher protein signature.;gbkey=misc_feature;gene=psaC;inference=protein motif:ProSite:PS01151
AL590842.1	EMBL	gene	1466842	1467699	.	-	.	ID=gene1298;Name=nfo;gbkey=Gene;gene=nfo;gene_biotype=protein_coding;locus_tag=YPO1306
AL590842.1	EMBL	CDS	1466842	1467699	.	-	0	ID=cds1268;Parent=gene1298;Dbxref=GOA:Q8ZGJ1,InterPro:IPR001719,InterPro:IPR013022,InterPro:IPR018246,NCBI_GP:CAL19959.1;Name=CAL19959.1;Note=Similar to Escherichia coli endonuclease IV Nfo SW:END4_ECOLI (P12638) (285 aa) fasta scores: E(): 0%2C 81.3%25 id in 278 aa%2C and to Caenorhabditis elegans DNA- Apn-1 or T05H10.2 SW:APN1_CAEEL (Q10002) (278 aa) fasta scores: E(): 0%2C 46.3%25 id in 259 aa;gbkey=CDS;gene=nfo;product=endonuclease IV;protein_id=CAL19959.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1466860	1467678	.	-	.	ID=id3001;Note=Pfam match to entry PF01261 AP_endonulease2%2C AP endonuclease family 2%2C score 514.50%2C E-value 8e-151;gbkey=misc_feature;gene=nfo;inference=protein motif:PF01261
AL590842.1	EMBL	sequence_feature	1466974	1466997	.	-	.	ID=id3002;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=nfo;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1467154	1467177	.	-	.	ID=id3003;Note=PS00730 AP endonucleases family 2 signature 2.;gbkey=misc_feature;gene=nfo;inference=protein motif:ProSite:PS00730
AL590842.1	EMBL	sequence_feature	1467469	1467495	.	-	.	ID=id3004;Note=PS00729 AP endonucleases family 2 signature 1.;gbkey=misc_feature;gene=nfo;inference=protein motif:ProSite:PS00729
AL590842.1	EMBL	gene	1467863	1468951	.	-	.	ID=gene1299;Name=YPO1307;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1307
AL590842.1	EMBL	CDS	1467863	1468951	.	-	0	ID=cds1269;Parent=gene1299;Dbxref=GOA:Q8ZGJ0,InterPro:IPR004630,InterPro:IPR018383,NCBI_GP:CAL19960.1;Name=CAL19960.1;Note=Similar to Escherichia coli hypothetical protein YeiH SW:YEIH_ECOLI (P33019) (349 aa) fasta scores: E(): 0%2C66.4%25 id in 339 aa%2C and to Neisseria meningitidis hypothetical inner membrane protein NMA0465 TR:Q9JWA8 (EMBL:AL162753) (338 aa) fasta scores: E(): 0%2C 49.9%25 id in 339 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL162753;product=putative membrane protein;protein_id=CAL19960.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1467884	1467949	.	-	.	ID=id3005;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1467971	1468036	.	-	.	ID=id3006;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1468052	1468117	.	-	.	ID=id3007;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1468181	1468231	.	-	.	ID=id3008;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1468382	1468447	.	-	.	ID=id3009;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1468469	1468534	.	-	.	ID=id3010;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1468580	1468645	.	-	.	ID=id3011;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1468742	1468807	.	-	.	ID=id3012;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1468838	1468888	.	-	.	ID=id3013;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1469609	1470481	.	+	.	ID=gene1300;Name=YPO1308;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1308
AL590842.1	EMBL	CDS	1469609	1470481	.	+	0	ID=cds1270;Parent=gene1300;Dbxref=GOA:Q7CHF1,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CHF1,NCBI_GP:CAL19961.1;Name=CAL19961.1;Note=Similar to Chromatium vinosum rubisco operon transcriptional regulator RbcR SW:RBCR_CHRVI (P25544) (302 aa) fasta scores: E(): 7.6e-29%2C 34.2%25 id in 295 aa%2C and to Escherichia coli hypothetical transcriptional regulator YeiE SW:YEIE_ECOLI (P32484) (293 aa) fasta scores: E(): 0%2C73.8%25 id in 286 aa;gbkey=CDS;product=putative LysR-family transcriptional regulatory protein;protein_id=CAL19961.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1469621	1470037	.	+	.	ID=id3014;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 143.00%2C E-value 5.5e-39;gbkey=misc_feature;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	1469663	1469755	.	+	.	ID=id3015;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00044
AL590842.1	EMBL	gene	1470739	1472250	.	+	.	ID=gene1301;Name=cadR;gbkey=Gene;gene=cadR;gene_biotype=protein_coding;gene_synonym=lysP;locus_tag=YPO1309
AL590842.1	EMBL	CDS	1470739	1472250	.	+	0	ID=cds1271;Parent=gene1301;Dbxref=GOA:Q7CHF2,InterPro:IPR002293,InterPro:IPR004840,InterPro:IPR004841,UniProtKB/TrEMBL:Q7CHF2,NCBI_GP:CAL19962.1;Name=CAL19962.1;Note=Similar to Escherichia coli lysine-specific permease LysP SW:LYSP_ECOLI (P25737) (488 aa) fasta scores: E(): 0%2C87.6%25 id in 476 aa%2C and to Pseudomonas aeruginosa lysine-specific permease LysP TR:AAG08016 (EMBL:AE004877) (487 aa) fasta scores: E(): 0%2C 72.6%25 id in 481 aa;gbkey=CDS;gene=cadR;inference=similar to sequence:INSDC:AE004877;product=putative lysine-specific permease;protein_id=CAL19962.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1470787	1472166	.	+	.	ID=id3016;Note=Pfam match to entry PF00324 aa_permeases%2C Amino acid permease%2C score 843.00%2C E-value 9.9e-250;gbkey=misc_feature;gene=cadR;inference=protein motif:PF00324
AL590842.1	EMBL	sequence_feature	1470811	1470879	.	+	.	ID=id3017;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cadR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1470886	1470981	.	+	.	ID=id3018;Note=PS00218 Amino acid permeases signature.;gbkey=misc_feature;gene=cadR;inference=protein motif:ProSite:PS00218
AL590842.1	EMBL	sequence_feature	1470922	1470990	.	+	.	ID=id3019;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cadR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1471027	1471095	.	+	.	ID=id3020;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cadR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1471138	1471206	.	+	.	ID=id3021;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cadR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1471225	1471293	.	+	.	ID=id3022;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cadR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1471336	1471404	.	+	.	ID=id3023;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cadR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1471483	1471551	.	+	.	ID=id3024;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cadR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1471621	1471689	.	+	.	ID=id3025;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cadR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1471777	1471845	.	+	.	ID=id3026;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cadR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1471858	1471926	.	+	.	ID=id3027;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cadR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1471987	1472055	.	+	.	ID=id3028;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cadR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1472083	1472151	.	+	.	ID=id3029;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cadR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1472536	1473681	.	+	.	ID=gene1302;Name=YPO1310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1310
AL590842.1	EMBL	CDS	1472536	1473681	.	+	0	ID=cds1272;Parent=gene1302;Dbxref=InterPro:IPR002491,UniProtKB/TrEMBL:Q0WHA3,NCBI_GP:CAL19963.1;Name=CAL19963.1;Note=Similar to Methanococcus jannaschii hypothetical protein MJ0085 SW:Y085_METJA (Q57550) (373 aa) fasta scores: E(): 1.6e-10%2C 26.7%25 id in 352 aa%2C and to Archaeoglobus fulgidus possible iron (III) ABC transporter%2CATP-binding protein (hemV-2) AF0432 TR:O29817 (EMBL:AE001075) (366 aa) fasta scores: E(): 2.3e-09%2C 27.9%25 id in 344 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE001075;product=putative periplasmic substrate-binding transport protein;protein_id=CAL19963.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1472569	1472637	.	+	.	ID=id3030;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1472740	1473510	.	+	.	ID=id3031;Note=Pfam match to entry PF01497 Peripla_BP_2%2CPeriplasmic binding protein%2C score 32.70%2C E-value 2.5e-06;gbkey=misc_feature;inference=protein motif:PF01497
AL590842.1	EMBL	gene	1473876	1474958	.	+	.	ID=gene1303;Name=YPO1311;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1311
AL590842.1	EMBL	CDS	1473876	1474958	.	+	0	ID=cds1273;Parent=gene1303;Dbxref=GOA:Q7CHF3,InterPro:IPR000522,InterPro:IPR029022,UniProtKB/TrEMBL:Q7CHF3,NCBI_GP:CAL19964.1;Name=CAL19964.1;Note=Similar to Yersinia pestis hemin transport system permease protein HmuU SW:HMUU_YERPE (Q56992) (334 aa) fasta scores: E(): 0%2C 37.3%25 id in 335 aa%2C and to Corynebacterium diphtheriae ABC-type transporter permease HmuU TR:Q9XD88 (EMBL:AF109162) (350 aa) fasta scores: E(): 0%2C 36.3%25 id in 331 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF109162;product=putative FecCD-family membrane transport protein;protein_id=CAL19964.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1473963	1474031	.	+	.	ID=id3032;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1474029	1474940	.	+	.	ID=id3033;Note=Pfam match to entry PF01032 FecCD_family%2C FecCD transport family%2C score 291.30%2C E-value 1.2e-83;gbkey=misc_feature;inference=protein motif:PF01032
AL590842.1	EMBL	sequence_feature	1474104	1474172	.	+	.	ID=id3034;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1474209	1474277	.	+	.	ID=id3035;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1474305	1474361	.	+	.	ID=id3036;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1474398	1474466	.	+	.	ID=id3037;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1474524	1474592	.	+	.	ID=id3038;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1474695	1474763	.	+	.	ID=id3039;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1474791	1474850	.	+	.	ID=id3040;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1474869	1474937	.	+	.	ID=id3041;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1474955	1475743	.	+	.	ID=gene1304;Name=YPO1312;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1312
AL590842.1	EMBL	CDS	1474955	1475743	.	+	0	ID=cds1274;Parent=gene1304;Dbxref=GOA:Q7CHF4,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CHF4,NCBI_GP:CAL19965.1;Name=CAL19965.1;Note=Similar to Vibrio cholerae vibriobactin ABC transporter ATPase ViuC TR:Q9RCF3 (EMBL:U52150) (279 aa) fasta scores: E(): 1.5e-24%2C 37.7%25 id in 239 aa%2C and to Escherichia coli ferric enterobactin transport ATP-binding protein FepC SW:FEPC_ECOLI (P23878) (271 aa) fasta scores: E(): 5.2e-24%2C 34.1%25 id in 264 aa;gbkey=CDS;inference=similar to sequence:INSDC:U52150;product=putative siderophore ABC transporter%2C ATP-binding subunit;protein_id=CAL19965.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1475045	1475596	.	+	.	ID=id3042;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 173.90%2C E-value 2.6e-48;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1475066	1475089	.	+	.	ID=id3043;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1475366	1475410	.	+	.	ID=id3044;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	1476003	1478000	.	+	.	ID=gene1305;Name=YPO1313;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1313
AL590842.1	EMBL	CDS	1476003	1478000	.	+	0	ID=cds1275;Parent=gene1305;Dbxref=GOA:Q7CHF5,InterPro:IPR000531,InterPro:IPR010916,InterPro:IPR012910,UniProtKB/TrEMBL:Q7CHF5,NCBI_GP:CAL19966.1;Name=CAL19966.1;Note=Similar to Vibrio cholerae iron-regulated outer membrane virulence protein precursor IrgA SW:IRGA_VIBCH (P27772) (652 aa) fasta scores: E(): 0%2C 46.2%25 id in 671 aa%2Cand to Escherichia coli exogenous ferric siderophore receptor R4 TR:O87518 (EMBL:AF081285) (669 aa) fasta scores: E(): 0%2C 36.9%25 id in 651 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF081285;product=putative outer membrane protein;protein_id=CAL19966.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1476003	1476140	.	+	.	ID=id3045;Note=PS00430 TonB-dependent receptor proteins signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS00430
AL590842.1	EMBL	sequence_feature	1477692	1477997	.	+	.	ID=id3046;Note=Pfam match to entry PF00593 TonB_boxC%2C TonB dependent receptor C-terminal region%2C score 68.40%2C E-value 1.2e-17;gbkey=misc_feature;inference=protein motif:PF00593
AL590842.1	EMBL	gene	1478270	1478890	.	-	.	ID=gene1306;Name=YPO1314;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1314
AL590842.1	EMBL	CDS	1478270	1478890	.	-	0	ID=cds1276;Parent=gene1306;Dbxref=GOA:Q0WH99,InterPro:IPR004045,InterPro:IPR004046,InterPro:IPR010987,InterPro:IPR012336,UniProtKB/TrEMBL:Q0WH99,NCBI_GP:CAL19967.1;Name=CAL19967.1;Note=Similar to Pseudomonas aeruginosa probable glutathione S-transferase PA2813 TR:AAG06201 (EMBL:AE004708) (206 aa) fasta scores: E(): 0%2C 51.5%25 id in 206 aa%2C and to Zea mays glutathione S-transferase IV Gst4 SW:GTH4_MAIZE (P46420) (222 aa) fasta scores: E(): 1.8e-12%2C27.1%25 id in 203 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004708;product=putative glutathione S-transferase-family protein;protein_id=CAL19967.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1478306	1478887	.	-	.	ID=id3047;Note=Pfam match to entry PF00043 GST%2C Glutathione S-transferases.%2C score 87.30%2C E-value 1.6e-25;gbkey=misc_feature;inference=protein motif:PF00043
AL590842.1	EMBL	gene	1479044	1479694	.	-	.	ID=gene1307;Name=YPO1315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1315
AL590842.1	EMBL	CDS	1479044	1479694	.	-	0	ID=cds1277;Parent=gene1307;Dbxref=GOA:Q7CHF6,InterPro:IPR006383,InterPro:IPR006385,InterPro:IPR023214,UniProtKB/TrEMBL:Q7CHF6,NCBI_GP:CAL19968.1;Name=CAL19968.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA1143 TR:AAG04532 (EMBL:AE004544) (217 aa) fasta scores: E(): 5.4e-29%2C 42.4%25 id in 217 aa%2C and to Streptomyces cyaneus inhibition of morphological differentiation protein SW:IMD_STRCN (O33611) (277 aa) fasta scores: E(): 3.2e-10%2C 29.7%25 id in 219 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004544;product=putative hydrolase;protein_id=CAL19968.1;transl_table=11
AL590842.1	EMBL	gene	1480181	1481248	.	+	.	ID=gene1308;Name=YPO1316;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1316
AL590842.1	EMBL	CDS	1480181	1481248	.	+	0	ID=cds1278;Parent=gene1308;Dbxref=GOA:Q74VM2,InterPro:IPR002283,InterPro:IPR005123,InterPro:IPR026992,InterPro:IPR027443,UniProtKB/TrEMBL:Q74VM2,NCBI_GP:CAL19969.1;Name=CAL19969.1;Note=Similar to Campylobacter jejuni putative iron/ascorbate-dependent oxidoreductase CJ1199 TR:Q9PN96 (EMBL:AL139077) (330 aa) fasta scores: E(): 0%2C 46.8%25 id in 327 aa%2C and to Pseudomonas aeruginosa probable iron/ascorbate oxidoreductase PA4191 TR:AAG07578 (EMBL:AE004835) (334 aa) fasta scores: E(): 1.2e-31%2C 37.1%25 id in 294 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL139077;product=putative iron/ascorbate oxidoreductase family protein;protein_id=CAL19969.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1480283	1481119	.	+	.	ID=id3048;Note=Pfam match to entry PF00671 Fe_Asc_oxidored%2CIron/Ascorbate oxidoreductase family%2C score 148.00%2C E-value 1.6e-40;gbkey=misc_feature;inference=protein motif:PF00671
AL590842.1	EMBL	gene	1481476	1482300	.	+	.	ID=gene1309;Name=YPO1317;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1317
AL590842.1	EMBL	CDS	1481476	1482300	.	+	0	ID=cds1279;Parent=gene1309;Dbxref=InterPro:IPR004872,UniProtKB/TrEMBL:Q7CHF7,NCBI_GP:CAL19970.1;Name=CAL19970.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA3931 TR:AAG07318 (EMBL:AE004811) (259 aa) fasta scores: E(): 0%2C 50.2%25 id in 257 aa%2C and to Streptomyces coelicolor putative lipoprotein SCL11.13c TR:Q9L1C5 (EMBL:AL157953) (275 aa) fasta scores: E(): 0%2C 48.0%25 id in 269 aa%2C and to Pseudomonas aeruginosa probable TonB-dependent receptor PA5505 TR:AAG08890 (EMBL:AE004963) (260 aa) fasta scores: E(): 0%2C 47.7%25 id in 258 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL157953;product=putative exported protein;protein_id=CAL19970.1;transl_table=11
AL590842.1	EMBL	gene	1482297	1483283	.	+	.	ID=gene1310;Name=YPO1318;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1318
AL590842.1	EMBL	CDS	1482297	1483283	.	+	0	ID=cds1280;Parent=gene1310;Dbxref=GOA:Q7CHF8,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR017908,InterPro:IPR018449,InterPro:IPR026253,InterPro:IPR027417,NCBI_GP:CAL19971.1;Name=CAL19971.1;Note=Similar to Streptomyces coelicolor putative ABC transporter ATP-binding protein SCL11.15c TR:Q9L1C3 (EMBL:AL157953) (368 aa) fasta scores: E(): 0%2C 50.4%25 id in 335 aa%2C and to Escherichia coli ATP-binding protein Abc SW:ABC_ECOLI (P30750) (343 aa) fasta scores: E(): 0%2C 44.7%25 id in 342 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL157953;product=putative ABC transport ATP-binding subunit;protein_id=CAL19971.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1482387	1482947	.	+	.	ID=id3049;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 224.70%2C E-value 1.4e-63;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1482408	1482431	.	+	.	ID=id3050;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1482717	1482761	.	+	.	ID=id3051;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	1483280	1483951	.	+	.	ID=gene1311;Name=YPO1319;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1319
AL590842.1	EMBL	CDS	1483280	1483951	.	+	0	ID=cds1281;Parent=gene1311;Dbxref=GOA:Q7CHF9,InterPro:IPR000515,UniProtKB/TrEMBL:Q7CHF9,NCBI_GP:CAL19972.1;Name=CAL19972.1;Note=Similar to Streptomyces coelicolor putative ABC transporter permease protein SCL11.14C TR:Q9L1C4 (EMBL:AL157953) (240 aa) fasta scores: E(): 0%2C 54.0%25 id in 211 aa%2C and to Pseudomonas aeruginosa probable permease of ABC transporter PA5504 TR:AAG08889 (EMBL:AE004963) (225 aa) fasta scores: E(): 0%2C 50.0%25 id in 218 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL157953;product=putative ABC transport integral membrane subunit;protein_id=CAL19972.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1483343	1483411	.	+	.	ID=id3052;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1483454	1483522	.	+	.	ID=id3053;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1483535	1483603	.	+	.	ID=id3054;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1483625	1483837	.	+	.	ID=id3055;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 41.10%2C E-value 2.5e-08;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	1483742	1483810	.	+	.	ID=id3056;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1483844	1483912	.	+	.	ID=id3057;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1484193	1485491	.	+	.	ID=gene1312;Name=dacC;gbkey=Gene;gene=dacC;gene_biotype=protein_coding;locus_tag=YPO1320
AL590842.1	EMBL	CDS	1484193	1485491	.	+	0	ID=cds1282;Parent=gene1312;Dbxref=GOA:Q7CHG0,InterPro:IPR001967,InterPro:IPR012338,InterPro:IPR012907,InterPro:IPR015956,InterPro:IPR018044,UniProtKB/TrEMBL:Q7CHG0,NCBI_GP:CAL19973.1;Name=CAL19973.1;Note=Similar to Escherichia coli penicillin-binding protein 6 precursor DacC SW:DACC_ECOLI (P08506) (400 aa) fasta scores: E(): 0%2C 73.3%25 id in 386 aa%2C to Vibrio cholerae D-alanyl-D-alanine carboxypeptidase VC0947 TR:Q9KTF5 (EMBL:AE004177) (391 aa) fasta scores: E(): 0%2C53.3%25 id in 396 aa and to Yersinia pestis YPO2601 (367 aa) fasta scores:E(): 0%2C 72.3%25 identity in 365 aa overlap;gbkey=CDS;gene=dacC;inference=similar to sequence:INSDC:AE004177;product=D-alanyl-D-alanine carboxypeptidase;protein_id=CAL19973.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1484367	1485149	.	+	.	ID=id3058;Note=Pfam match to entry PF00768 Peptidase_S11%2CD-alanyl-D-alanine carboxypeptidase%2C score 506.00%2C E-value 2.8e-148;gbkey=misc_feature;gene=dacC;inference=protein motif:PF00768
AL590842.1	EMBL	gene	1485931	1487232	.	-	.	ID=gene1313;Name=b2796;gbkey=Gene;gene=b2796;gene_biotype=protein_coding;gene_synonym=dcrA,sdaC;locus_tag=YPO1321
AL590842.1	EMBL	CDS	1485931	1487232	.	-	0	ID=cds1283;Parent=gene1313;Dbxref=GOA:Q0WH92,InterPro:IPR004694,InterPro:IPR018227,UniProtKB/TrEMBL:Q0WH92,NCBI_GP:CAL19974.1;Name=CAL19974.1;Note=Similar to Escherichia coli serine transporter SdaC SW:SDAC_ECOLI (P36559) (429 aa) fasta scores: E(): 0%2C 83.0%25 id in 429 aa%2C and to Aeromonas salmonicida membrane virulence protein AsoA TR:Q44218 (EMBL:U08855) (431 aa) fasta scores: E(): 0%2C 65.6%25 id in 419 aa;gbkey=CDS;gene=b2796;inference=similar to sequence:INSDC:U08855;product=serine transporter;protein_id=CAL19974.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1485943	1486008	.	-	.	ID=id3059;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b2796;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1486048	1486098	.	-	.	ID=id3060;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b2796;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1486111	1486176	.	-	.	ID=id3061;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b2796;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1486264	1486329	.	-	.	ID=id3062;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b2796;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1486411	1486476	.	-	.	ID=id3063;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b2796;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1486528	1486593	.	-	.	ID=id3064;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b2796;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1486654	1486719	.	-	.	ID=id3065;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b2796;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1486756	1486806	.	-	.	ID=id3066;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b2796;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1486867	1486923	.	-	.	ID=id3067;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b2796;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1487026	1487091	.	-	.	ID=id3068;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b2796;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1487104	1487154	.	-	.	ID=id3069;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b2796;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1488332	1489096	.	-	.	ID=gene1314;Name=deoR;gbkey=Gene;gene=deoR;gene_biotype=protein_coding;gene_synonym=nucR;locus_tag=YPO1322
AL590842.1	EMBL	CDS	1488332	1489096	.	-	0	ID=cds1284;Parent=gene1314;Dbxref=GOA:Q7CHG1,InterPro:IPR001034,InterPro:IPR014036,InterPro:IPR018356,UniProtKB/TrEMBL:Q7CHG1,NCBI_GP:CAL19975.1;Name=CAL19975.1;Note=Similar to Escherichia coli deoxyribose operon repressor DeoR SW:DEOR_ECOLI (P06217) (252 aa) fasta scores: E(): 0%2C 56.7%25 id in 252 aa%2C and to Salmonella typhimurium transcriptional activator DeoR TR:O30907 (EMBL:AF020809) (252 aa) fasta scores: E(): 0%2C 57.1%25 id in 252 aa;gbkey=CDS;gene=deoR;inference=similar to sequence:INSDC:AF020809;product=deoxyribose operon repressor;protein_id=CAL19975.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1488395	1489075	.	-	.	ID=id3070;Note=Pfam match to entry PF00455 deoR%2C Bacterial regulatory proteins%2C deoR family%2C score 273.40%2C E-value 3e-78;gbkey=misc_feature;gene=deoR;inference=protein motif:PF00455
AL590842.1	EMBL	sequence_feature	1488968	1489033	.	-	.	ID=id3071;Note=Predicted helix-turn-helix motif with score 1500 (+4.30 SD) at aa 22-43%2C sequence IHLKDAANLLRVSEMTIRRDLS;gbkey=misc_feature;gene=deoR
AL590842.1	EMBL	sequence_feature	1488971	1489075	.	-	.	ID=id3072;Note=PS00894 Bacterial regulatory proteins%2C deoR family signature.;gbkey=misc_feature;gene=deoR;inference=protein motif:ProSite:PS00894
AL590842.1	EMBL	gene	1489326	1489997	.	-	.	ID=gene1315;Name=deoC;gbkey=Gene;gene=deoC;gene_biotype=protein_coding;gene_synonym=dra;locus_tag=YPO1323
AL590842.1	EMBL	CDS	1489326	1489997	.	-	0	ID=cds1285;Parent=gene1315;Dbxref=GOA:Q8ZGH4,InterPro:IPR002915,InterPro:IPR011343,InterPro:IPR013785,InterPro:IPR028581,NCBI_GP:CAL19976.1;Name=CAL19976.1;Note=Similar to Bacillus subtilis deoxyribose-phosphate aldolase DeoC SW:DEOC_BACSU (P39121) (211 aa) fasta scores: E(): 0%2C 53.0%25 id in 200 aa%2C and to Haemophilus influenzae deoxyribose-phosphate aldolase DeoC SW:DEOC_HAEIN (P44430) (223 aa) fasta scores: E(): 0%2C 61.6%25 id in 224 aa;gbkey=CDS;gene=deoC;product=putative deoxyribose-phosphate aldolase;protein_id=CAL19976.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1489356	1489991	.	-	.	ID=id3073;Note=Pfam match to entry PF01791 DeoC%2CDeoxyribose-phosphate aldolase%2C score 323.60%2C E-value 2.3e-93;gbkey=misc_feature;gene=deoC;inference=protein motif:PF01791
AL590842.1	EMBL	gene	1490255	1490851	.	-	.	ID=gene1316;Name=YPO1324;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1324
AL590842.1	EMBL	CDS	1490255	1490851	.	-	0	ID=cds1286;Parent=gene1316;Dbxref=GOA:Q0WH89,InterPro:IPR000326,UniProtKB/TrEMBL:Q0WH89,NCBI_GP:CAL19977.1;Name=CAL19977.1;Note=Similar to Bacillus licheniformis bacitracin transport permease protein BcrC SW:BCRC_BACLI (P42334) (203 aa) fasta scores: E(): 1.4e-07%2C 30.0%25 id in 170 aa%2C and to Salmonella typhimurium putative permease Mig-13 TR:O30906 (EMBL:AF020809) (202 aa) fasta scores: E(): 0%2C 57.9%25 id in 197 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF020809;product=putative permease;protein_id=CAL19977.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1490333	1490782	.	-	.	ID=id3074;Note=Pfam match to entry PF01569 PAP2%2C PAP2 superfamily%2Cscore 92.40%2C E-value 9.1e-24;gbkey=misc_feature;inference=protein motif:PF01569
AL590842.1	EMBL	sequence_feature	1490336	1490401	.	-	.	ID=id3075;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1490432	1490482	.	-	.	ID=id3076;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1490498	1490548	.	-	.	ID=id3077;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1490618	1490683	.	-	.	ID=id3078;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1490720	1490785	.	-	.	ID=id3079;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1490860	1491675	.	-	.	ID=gene1317;Name=YPO1325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1325
AL590842.1	EMBL	CDS	1490860	1491675	.	-	0	ID=cds1287;Parent=gene1317;Dbxref=GOA:Q7CHG2,InterPro:IPR000326,UniProtKB/TrEMBL:Q7CHG2,NCBI_GP:CAL19978.1;Name=CAL19978.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA4382 TR:AAG07770 (EMBL:AE004854) (264 aa) fasta scores: E(): 1.6e-21%2C 34.1%25 id in 226 aa%2C and to Xylella fastidiosa hypothetical protein XF0374 TR:Q9PGC8 (EMBL:AE003889) (255 aa) fasta scores: E(): 1.8e-15%2C 30.9%25 id in 220 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004854;product=putative membrane protein;protein_id=CAL19978.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1490884	1490940	.	-	.	ID=id3080;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1490971	1491036	.	-	.	ID=id3081;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1491058	1491114	.	-	.	ID=id3082;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1491214	1491279	.	-	.	ID=id3083;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1491301	1491366	.	-	.	ID=id3084;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1491463	1491528	.	-	.	ID=id3085;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1492008	1493696	.	-	.	ID=gene1318;Name=YPO1326;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1326
AL590842.1	EMBL	CDS	1492008	1493696	.	-	0	ID=cds1288;Parent=gene1318;Dbxref=GOA:Q8ZGH1,InterPro:IPR006037,InterPro:IPR006512,InterPro:IPR023017,NCBI_GP:CAL19979.1;Name=CAL19979.1;Note=Similar to Escherichia coli hypothetical protein HI0035 TR:P75812 (EMBL:AE000187) (561 aa) fasta scores: E(): 0%2C 90.0%25 id in 560 aa%2C and to Vibrio cholerae hypothetical protein VC1145 TR:Q9KSW1 (EMBL:AE004194) (558 aa) fasta scores: E(): 0%2C 65.1%25 id in 559 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004194;product=TrkA%2C Potassium channel-family protein;protein_id=CAL19979.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1492014	1492079	.	-	.	ID=id3086;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1492203	1492268	.	-	.	ID=id3087;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1492290	1492355	.	-	.	ID=id3088;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1492416	1492472	.	-	.	ID=id3089;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1492494	1492559	.	-	.	ID=id3090;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1492575	1492814	.	-	.	ID=id3091;Note=Pfam match to entry PF02080 TrkA%2C Potassium channel%2Cscore 39.10%2C E-value 9.9e-08;gbkey=misc_feature;inference=protein motif:PF02080
AL590842.1	EMBL	sequence_feature	1492827	1493087	.	-	.	ID=id3092;Note=Pfam match to entry PF02080 TrkA%2C Potassium channel%2Cscore 62.70%2C E-value 7.9e-15;gbkey=misc_feature;inference=protein motif:PF02080
AL590842.1	EMBL	sequence_feature	1493154	1493219	.	-	.	ID=id3093;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1493283	1493348	.	-	.	ID=id3094;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1493364	1493417	.	-	.	ID=id3095;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1493439	1493504	.	-	.	ID=id3096;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1493535	1493600	.	-	.	ID=id3097;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1493616	1493681	.	-	.	ID=id3098;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1494106	1494369	.	-	.	ID=gene1319;Name=grxA;gbkey=Gene;gene=grxA;gene_biotype=protein_coding;locus_tag=YPO1327
AL590842.1	EMBL	CDS	1494106	1494369	.	-	0	ID=cds1289;Parent=gene1319;Dbxref=GOA:Q7CHG3,InterPro:IPR002109,InterPro:IPR011767,InterPro:IPR011902,InterPro:IPR012336,InterPro:IPR014025,UniProtKB/TrEMBL:Q7CHG3,NCBI_GP:CAL19980.1;Name=CAL19980.1;Note=Similar to Salmonella typhimurium glutaredoxin 1 GrxA SW:GRX1_SALTY (Q9Z5Z3) (87 aa) fasta scores: E(): 2.1e-29%2C 79.1%25 id in 86 aa%2C and to Escherichia coli glutaredoxin 1 GrxA or grX SW:GLR1_ECOLI (P00277) (85 aa) fasta scores: E(): 1.6e-23%2C 69.9%25 id in 83 aa;gbkey=CDS;gene=grxA;product=glutaredoxin 1;protein_id=CAL19980.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1494172	1494366	.	-	.	ID=id3099;Note=Pfam match to entry PF00462 glutaredoxin%2CGlutaredoxin%2C score 86.00%2C E-value 7.4e-22;gbkey=misc_feature;gene=grxA;inference=protein motif:PF00462
AL590842.1	EMBL	sequence_feature	1494310	1494357	.	-	.	ID=id3100;Note=PS00195 Glutaredoxin active site.;gbkey=misc_feature;gene=grxA;inference=protein motif:ProSite:PS00195
AL590842.1	EMBL	ribosome_entry_site	1494376	1494381	.	-	.	ID=id3101;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	1494832	1495146	.	+	.	ID=gene1320;Name=YPO1328;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1328
AL590842.1	EMBL	CDS	1494832	1495146	.	+	0	ID=cds1290;Parent=gene1320;Dbxref=InterPro:IPR010815,UniProtKB/TrEMBL:Q7CHG4,NCBI_GP:CAL19981.1;Name=CAL19981.1;Note=Similar to Escherichia coli hypothetical protein YbjC SW:YBJC_ECOLI (P46119) (95 aa) fasta scores: E(): 2.5e-09%2C 40.4%25 id in 104 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL19981.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1494850	1494918	.	+	.	ID=id3102;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1494961	1495029	.	+	.	ID=id3103;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1495162	1495281	.	+	.	ID=gene1321;Name=YPO1329;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1329
AL590842.1	EMBL	CDS	1495162	1495281	.	+	0	ID=cds1291;Parent=gene1321;Dbxref=UniProtKB/TrEMBL:Q0WH84,NCBI_GP:CAL19982.1;Name=CAL19982.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19982.1;transl_table=11
AL590842.1	EMBL	gene	1495288	1495773	.	+	.	ID=gene1322;Name=YPO1330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1330
AL590842.1	EMBL	CDS	1495288	1495773	.	+	0	ID=cds1292;Parent=gene1322;Dbxref=InterPro:IPR019660,UniProtKB/TrEMBL:Q7CHG5,NCBI_GP:CAL19983.1;Name=CAL19983.1;Note=Similar to Escherichia coli hypothetical protein YbjN SW:YBJN_ECOLI (P75815) (158 aa) fasta scores: E(): 0%2C68.8%25 id in 157 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL19983.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	1496277	1496281	.	+	.	ID=id3104;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	1496291	1497400	.	+	.	ID=gene1323;Name=potF;gbkey=Gene;gene=potF;gene_biotype=protein_coding;locus_tag=YPO1331
AL590842.1	EMBL	CDS	1496291	1497400	.	+	0	ID=cds1293;Parent=gene1323;Dbxref=GOA:Q0WH82,InterPro:IPR001188,UniProtKB/TrEMBL:Q0WH82,NCBI_GP:CAL19984.1;Name=CAL19984.1;Note=Similar to Escherichia coli putrescine-binding periplasmic protein precursor PotF SW:POTF_ECOLI (P31133) (370 aa) fasta scores: E(): 0%2C 85.9%25 id in 370 aa%2C and to Pseudomonas fluorescens putative putrescine/spermidine binding protein TR:O69760 (EMBL:L49465) (377 aa) fasta scores: E(): 0%2C 52.6%25 id in 352 aa;gbkey=CDS;gene=potF;inference=similar to sequence:INSDC:L49465;product=putrescine-binding periplasmic protein precursor;protein_id=CAL19984.1;transl_table=11
AL590842.1	EMBL	gene	1497571	1498704	.	+	.	ID=gene1324;Name=potG;gbkey=Gene;gene=potG;gene_biotype=protein_coding;locus_tag=YPO1332
AL590842.1	EMBL	CDS	1497571	1498704	.	+	0	ID=cds1294;Parent=gene1324;Dbxref=GOA:Q7CHG6,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR005893,InterPro:IPR008995,InterPro:IPR013611,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CHG6,NCBI_GP:CAL19985.1;Name=CAL19985.1;Note=Similar to Escherichia coli putrescine transport ATP-binding protein PotG SW:POTG_ECOLI (P31134) (404 aa) fasta scores: E(): 0%2C 86.7%25 id in 375 aa%2C and to Pseudomonas aeruginosa polyamine transport protein PotG TR:AAG03691 (EMBL:AE004468) (384 aa) fasta scores: E(): 0%2C63.7%25 id in 364 aa;gbkey=CDS;gene=potG;inference=similar to sequence:INSDC:AE004468;product=putrescine transport ATP-binding protein;protein_id=CAL19985.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1497703	1498248	.	+	.	ID=id3105;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 244.30%2C E-value 1.7e-69;gbkey=misc_feature;gene=potG;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1497724	1497747	.	+	.	ID=id3106;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=potG;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1498018	1498062	.	+	.	ID=id3107;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=potG;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	1498729	1499694	.	+	.	ID=gene1325;Name=potH;gbkey=Gene;gene=potH;gene_biotype=protein_coding;locus_tag=YPO1333
AL590842.1	EMBL	CDS	1498729	1499694	.	+	0	ID=cds1295;Parent=gene1325;Dbxref=GOA:Q7CHG7,InterPro:IPR000515,UniProtKB/TrEMBL:Q7CHG7,NCBI_GP:CAL19986.1;Name=CAL19986.1;Note=Similar to Escherichia coli putrescine transport system permease protein PotH SW:POTH_ECOLI (P31135) (317 aa) fasta scores: E(): 0%2C 80.6%25 id in 310 aa%2C and to Pseudomonas aeruginosa polyamine transport protein poth PotH TR:AAG03692 (EMBL:AE004468) (293 aa) fasta scores: E(): 0%2C 64.3%25 id in 291 aa;gbkey=CDS;gene=potH;inference=similar to sequence:INSDC:AE004468;product=putrescine transport system permease protein;protein_id=CAL19986.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1498819	1498851	.	+	.	ID=id3108;Note=PS00133 Zinc carboxypeptidases%2C zinc-binding region 2 signature.;gbkey=misc_feature;gene=potH;inference=protein motif:ProSite:PS00133
AL590842.1	EMBL	sequence_feature	1498828	1498896	.	+	.	ID=id3109;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=potH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1499038	1499106	.	+	.	ID=id3110;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=potH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1499143	1499211	.	+	.	ID=id3111;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=potH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1499293	1499361	.	+	.	ID=id3112;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=potH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1499356	1499577	.	+	.	ID=id3113;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 83.90%2C E-value 3.2e-21;gbkey=misc_feature;gene=potH;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	1499359	1499445	.	+	.	ID=id3114;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;gene=potH;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	1499422	1499490	.	+	.	ID=id3115;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=potH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1499590	1499658	.	+	.	ID=id3116;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=potH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1499691	1500536	.	+	.	ID=gene1326;Name=potI;gbkey=Gene;gene=potI;gene_biotype=protein_coding;locus_tag=YPO1334
AL590842.1	EMBL	CDS	1499691	1500536	.	+	0	ID=cds1296;Parent=gene1326;Dbxref=GOA:Q7CHG8,InterPro:IPR000515,UniProtKB/TrEMBL:Q7CHG8,NCBI_GP:CAL19987.1;Name=CAL19987.1;Note=Similar to Escherichia coli putrescine transport system permease protein PotI SW:POTI_ECOLI (P31136) (281 aa) fasta scores: E(): 0%2C 84.3%25 id in 280 aa%2C and to Pseudomonas aeruginosa polyamine transport protein PotI TR:AAG03693 (EMBL:AE004468) (289 aa) fasta scores: E(): 0%2C63.4%25 id in 265 aa;gbkey=CDS;gene=potI;inference=similar to sequence:INSDC:AE004468;product=putrescine transport system permease protein;protein_id=CAL19987.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1499727	1499795	.	+	.	ID=id3117;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=potI;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1499895	1499963	.	+	.	ID=id3118;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=potI;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1500000	1500068	.	+	.	ID=id3119;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=potI;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1500111	1500179	.	+	.	ID=id3120;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=potI;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1500174	1500395	.	+	.	ID=id3121;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 46.60%2C E-value 5.6e-10;gbkey=misc_feature;gene=potI;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	1500177	1500263	.	+	.	ID=id3122;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;gene=potI;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	1500240	1500308	.	+	.	ID=id3123;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=potI;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1500324	1500392	.	+	.	ID=id3124;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=potI;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1500411	1500479	.	+	.	ID=id3125;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=potI;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1500661	1501125	.	+	.	ID=gene1327;Name=YPO1335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1335
AL590842.1	EMBL	CDS	1500661	1501125	.	+	0	ID=cds1297;Parent=gene1327;Dbxref=InterPro:IPR019703,UniProtKB/TrEMBL:Q7CHG9,NCBI_GP:CAL19988.1;Name=CAL19988.1;Note=Similar to Escherichia coli hypothetical protein YbjO SW:YBJO_ECOLI (P75816) (162 aa) fasta scores: E(): 2.9e-21%2C 40.7%25 id in 150 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL19988.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1500697	1500765	.	+	.	ID=id3126;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1500823	1500891	.	+	.	ID=id3127;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1500910	1500978	.	+	.	ID=id3128;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1501021	1501089	.	+	.	ID=id3129;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1501209	1502339	.	+	.	ID=gene1328;Name=YPO1336;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1336
AL590842.1	EMBL	CDS	1501209	1502339	.	+	0	ID=cds1298;Parent=gene1328;Dbxref=GOA:Q8ZGG1,InterPro:IPR001566,InterPro:IPR010280,InterPro:IPR011825,InterPro:IPR029063,NCBI_GP:CAL19989.1;Name=CAL19989.1;Note=Similar to Escherichia coli hypothetical RNA methyltransferase YbjF SW:YBJF_ECOLI (P75817) (375 aa) fasta scores: E(): 0%2C 74.7%25 id in 372 aa%2C and to Haemophilus influenzae hypothetical RNA methyltransferase HI0958 SW:YBJF_HAEIN (P44083) (392 aa) fasta scores: E(): 0%2C 56.6%25 id in 389 aa;gbkey=CDS;product=putative RNA methyltransferase;protein_id=CAL19989.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1502127	1502222	.	+	.	ID=id3130;Note=PS01230 RNA methyltransferase trmA family signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS01230
AL590842.1	EMBL	sequence_feature	1502277	1502309	.	+	.	ID=id3131;Note=PS01231 RNA methyltransferase trmA family signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS01231
AL590842.1	EMBL	pseudogene	1504695	1505156	.	-	.	ID=gene1329;Name=artJ;gbkey=Gene;gene=artJ;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO1337;part=1/2;pseudo=true
AL590842.1	EMBL	pseudogene	1502466	1502735	.	-	.	ID=gene1329;Name=artJ;gbkey=Gene;gene=artJ;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO1337;part=2/2;pseudo=true
AL590842.1	EMBL	CDS	1504695	1505156	.	-	0	ID=cds1299;Parent=gene1329;Dbxref=PSEUDO:CAL19990.1;Note=Similar to Escherichia coli arginine-binding periplasmic protein 2 precursor ArtJ SW:ARTJ_ECOLI (P30860) (243 aa) fasta scores: E(): 0%2C 78.6%25 id in 243 aa%2C and to Escherichia coli arginine-binding periplasmic protein 1 precursor ArtI SW:ARTI_ECOLI (P30859) (243 aa) fasta scores: E(): 0%2C 67.5%25 id in 243 aa. Disrupted by the isertion of an IS100 element after codon 154.;gbkey=CDS;gene=artJ;product=arginine-binding periplasmic protein 2 precursor (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	CDS	1502466	1502735	.	-	0	ID=cds1299;Parent=gene1329;Dbxref=PSEUDO:CAL19990.1;Note=Similar to Escherichia coli arginine-binding periplasmic protein 2 precursor ArtJ SW:ARTJ_ECOLI (P30860) (243 aa) fasta scores: E(): 0%2C 78.6%25 id in 243 aa%2C and to Escherichia coli arginine-binding periplasmic protein 1 precursor ArtI SW:ARTI_ECOLI (P30859) (243 aa) fasta scores: E(): 0%2C 67.5%25 id in 243 aa. Disrupted by the isertion of an IS100 element after codon 154.;gbkey=CDS;gene=artJ;product=arginine-binding periplasmic protein 2 precursor (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	1504983	1505024	.	-	.	ID=id3132;Note=PS01039 Bacterial extracellular solute-binding proteins%2C family 3 signature.;gbkey=misc_feature;gene=artJ;inference=protein motif:ProSite:PS01039
AL590842.1	EMBL	repeat_region	1502741	1504694	.	+	.	ID=id3133;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	1502741	1502768	.	+	.	ID=id3134;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1502827	1503849	.	+	.	ID=gene1330;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO1338
AL590842.1	EMBL	CDS	1502827	1503849	.	+	0	ID=cds1300;Parent=gene1330;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL19991.1;Name=CAL19991.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL19991.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1502851	1502934	.	+	.	ID=id3135;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	sequence_feature	1502878	1502943	.	+	.	ID=id3136;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	1503172	1503705	.	+	.	ID=id3137;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	gene	1503846	1504628	.	+	.	ID=gene1331;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO1339
AL590842.1	EMBL	CDS	1503846	1504628	.	+	0	ID=cds1301;Parent=gene1331;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL19992.1;Name=CAL19992.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL19992.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1504014	1504553	.	+	.	ID=id3138;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	1504173	1504196	.	+	.	ID=id3139;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1504641	1505156	.	-	.	ID=id3140;Note=Pfam match to entry PF00497 SBP_bac_3%2C Bacterial extracellular solute-binding proteins%2C family 3%2C score 118.90%2C E-value 9.5e-32;gbkey=misc_feature;inference=protein motif:PF00497
AL590842.1	EMBL	INVERTED	1504667	1504694	.	-	.	ID=id3141;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	ribosome_entry_site	1505392	1505396	.	+	.	ID=id3142;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	1505404	1505634	.	+	.	ID=gene1332;Name=YPO1341;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1341
AL590842.1	EMBL	CDS	1505404	1505634	.	+	0	ID=cds1302;Parent=gene1332;Dbxref=UniProtKB/TrEMBL:Q74VP0,NCBI_GP:CAL19993.1;Name=CAL19993.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL19993.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1505560	1505628	.	+	.	ID=id3143;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1505975	1506901	.	+	.	ID=gene1333;Name=YPO1342;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1342
AL590842.1	EMBL	CDS	1505975	1506901	.	+	0	ID=cds1303;Parent=gene1333;Dbxref=GOA:Q7CHH0,InterPro:IPR001107,InterPro:IPR001972,UniProtKB/TrEMBL:Q7CHH0,NCBI_GP:CAL19994.1;Name=CAL19994.1;Note=Similar to Toxocara canis prohibitin-like molecule TC-PRO-1 TR:O01720 (EMBL:U97204) (274 aa) fasta scores: E(): 5.7e-05%2C 23.3%25 id in 232 aa%2C and to Yersinia pestis plasmid pMT-1 encoded%2C putative serine protease y1114 TR:O68763 (EMBL:AF074611) (276 aa) fasta scores: E(): 6.1e-07%2C 24.7%25 id in 292 aa;gbkey=CDS;inference=similar to sequence:INSDC:U97204;product=putative SPFH domain protein;protein_id=CAL19994.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1506026	1506586	.	+	.	ID=id3144;Note=Pfam match to entry PF01145 Band_7%2C SPFH domain / Band 7 family%2C score -35.50%2C E-value 0.00078;gbkey=misc_feature;inference=protein motif:PF01145
AL590842.1	EMBL	gene	1507268	1508404	.	+	.	ID=gene1334;Name=YPO1343;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1343
AL590842.1	EMBL	CDS	1507268	1508404	.	+	0	ID=cds1304;Parent=gene1334;Dbxref=InterPro:IPR002491,UniProtKB/TrEMBL:Q7CHH1,NCBI_GP:CAL19995.1;Name=CAL19995.1;Note=Similar to Vibrio cholerae vibriobactin and enterobactin periplasmic binding protein ViuP TR:Q9RCF6 (EMBL:U52150) (325 aa) fasta scores: E(): 0.00051%2C 25.9%25 id in 259 aa%2C and to Thermotoga maritima possible iron(III) ABC transporter%2C periplasmic iron-binding protein TM0189 TR:Q9WY32 (EMBL:AE001704) (358 aa) fasta scores: E(): 0.0025%2C 24.9%25 id in 374 aa;gbkey=CDS;inference=similar to sequence:INSDC:U52150;product=putative periplasmic binding protein;protein_id=CAL19995.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1507490	1508236	.	+	.	ID=id3145;Note=Pfam match to entry PF01497 Peripla_BP_2%2CPeriplasmic binding protein%2C score 3.20%2C E-value 0.00018;gbkey=misc_feature;inference=protein motif:PF01497
AL590842.1	EMBL	gene	1508555	1509460	.	+	.	ID=gene1335;Name=YPO1344;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1344
AL590842.1	EMBL	CDS	1508555	1509460	.	+	0	ID=cds1305;Parent=gene1335;Dbxref=GOA:Q0WH71,InterPro:IPR000522,InterPro:IPR029022,UniProtKB/TrEMBL:Q0WH71,NCBI_GP:CAL19996.1;Name=CAL19996.1;Note=C-terminal domain similar to C-terminal region of Corynebacterium diphtheriae putative iron acquisition protein HmuU TR:Q9XD88 (EMBL:AF109162) (350 aa) fasta scores: E(): 7.4e-17%2C 36.7%25 id in 169 aa%2C and to Methanococcus jannaschii putative ABC transporter permease protein Mj0087 SW:Y087_METJA (Q57552) (349 aa) fasta scores: E(): 3.4e-20%2C 36.2%25 id in 185 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF109162;product=FecCD transport family protein;protein_id=CAL19996.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1508750	1509442	.	+	.	ID=id3146;Note=Pfam match to entry PF01032 FecCD_family%2C FecCD transport family%2C score 64.60%2C E-value 2.1e-15;gbkey=misc_feature;inference=protein motif:PF01032
AL590842.1	EMBL	sequence_feature	1509194	1509262	.	+	.	ID=id3147;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1509296	1509364	.	+	.	ID=id3148;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1509377	1509436	.	+	.	ID=id3149;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1509457	1510242	.	+	.	ID=gene1336;Name=YPO1345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1345
AL590842.1	EMBL	CDS	1509457	1510242	.	+	0	ID=cds1306;Parent=gene1336;Dbxref=GOA:Q7CHH2,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CHH2,NCBI_GP:CAL19997.1;Name=CAL19997.1;Note=Similar to Escherichia coli ferrichrome transport ATP-binding protein FhuC SW:FHUC_ECOLI (P07821) (265 aa) fasta scores: E(): 2.7e-22%2C 32.8%25 id in 259 aa%2C and to Streptomyces coelicolor Fe uptake system permease FtrE TR:CAC14366 (EMBL:AL445963) (272 aa) fasta scores: E(): 8.8e-22%2C 34.2%25 id in 260 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL445963;product=putative transport ATP-binding protein;protein_id=CAL19997.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1509541	1510080	.	+	.	ID=id3150;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 151.00%2C E-value 2.1e-41;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1509562	1509585	.	+	.	ID=id3151;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1509850	1509894	.	+	.	ID=id3152;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	1510239	1511027	.	+	.	ID=gene1337;Name=YPO1346;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1346
AL590842.1	EMBL	CDS	1510239	1511027	.	+	0	ID=cds1307;Parent=gene1337;Dbxref=GOA:Q0WH69,InterPro:IPR004298,InterPro:IPR016040,UniProtKB/TrEMBL:Q0WH69,NCBI_GP:CAL19998.1;Name=CAL19998.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA4836 TR:AAG08221 (EMBL:AE004896) (263 aa) fasta scores: E(): 4e-21%2C 34.4%25 id in 259 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004896;product=conserved hypothetical protein;protein_id=CAL19998.1;transl_table=11
AL590842.1	EMBL	gene	1511020	1512390	.	+	.	ID=gene1338;Name=YPO1347;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1347
AL590842.1	EMBL	CDS	1511020	1512390	.	+	0	ID=cds1308;Parent=gene1338;Dbxref=InterPro:IPR016040,InterPro:IPR016935,UniProtKB/TrEMBL:Q0WH68,NCBI_GP:CAL19999.1;Name=CAL19999.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA4835 TR:AAG08220 (EMBL:AE004896) (433 aa) fasta scores: E(): 0%2C 40.0%25 id in 447 aa%2C and to Bacillus halodurans hypothtetical protein BH2073 TR:Q9KB58 (EMBL:AP001514) (436 aa) fasta scores: E(): 3.7e-26%2C 30.0%25 id in 414 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001514;product=putative exported protein;protein_id=CAL19999.1;transl_table=11
AL590842.1	EMBL	gene	1512387	1513232	.	+	.	ID=gene1339;Name=YPO1348;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1348
AL590842.1	EMBL	CDS	1512387	1513232	.	+	0	ID=cds1309;Parent=gene1339;Dbxref=GOA:Q0WH67,InterPro:IPR000620,UniProtKB/TrEMBL:Q0WH67,NCBI_GP:CAL20000.1;Name=CAL20000.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA4834 TR:AAG08219 (EMBL:AE004896) (284 aa) fasta scores: E(): 0%2C 55.7%25 id in 280 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA2628 TR:AAG06016 (EMBL:AE004691) (296 aa) fasta scores: E(): 6.6e-28%2C 33.2%25 id in 283 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004896;product=putative membrane protein;protein_id=CAL20000.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1512423	1512788	.	+	.	ID=id3153;Note=Pfam match to entry PF00892 DUF6%2C Integral membrane protein DUF6%2C score 62.70%2C E-value 7.6e-15;gbkey=misc_feature;inference=protein motif:PF00892
AL590842.1	EMBL	sequence_feature	1512489	1512557	.	+	.	ID=id3154;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1512576	1512644	.	+	.	ID=id3155;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1512657	1512716	.	+	.	ID=id3156;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1512735	1512794	.	+	.	ID=id3157;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1512804	1512872	.	+	.	ID=id3158;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1512843	1513208	.	+	.	ID=id3159;Note=Pfam match to entry PF00892 DUF6%2C Integral membrane protein DUF6%2C score 27.20%2C E-value 0.00038;gbkey=misc_feature;inference=protein motif:PF00892
AL590842.1	EMBL	sequence_feature	1512906	1512974	.	+	.	ID=id3160;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1512987	1513055	.	+	.	ID=id3161;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1513068	1513136	.	+	.	ID=id3162;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1513149	1513208	.	+	.	ID=id3163;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1513422	1514090	.	-	.	ID=gene1340;Name=artM;gbkey=Gene;gene=artM;gene_biotype=protein_coding;locus_tag=YPO1349
AL590842.1	EMBL	CDS	1513422	1514090	.	-	0	ID=cds1310;Parent=gene1340;Dbxref=GOA:Q7CHH3,InterPro:IPR000515,InterPro:IPR010065,UniProtKB/TrEMBL:Q7CHH3,NCBI_GP:CAL20001.1;Name=CAL20001.1;Note=Similar to Escherichia coli arginine transport system permease protein ArtM SW:ARTM_ECOLI (P30862) (222 aa) fasta scores: E(): 0%2C 81.1%25 id in 222 aa%2C and to Vibrio cholerae arginine ABC transporter%2C permease protein VCA0757 TR:Q9KLI7 (EMBL:AE004404) (222 aa) fasta scores: E(): 0%2C61.9%25 id in 218 aa;gbkey=CDS;gene=artM;inference=similar to sequence:INSDC:AE004404;product=arginine transport system permease protein;protein_id=CAL20001.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1513458	1513523	.	-	.	ID=id3164;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=artM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1513524	1513754	.	-	.	ID=id3165;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 25.80%2C E-value 0.001;gbkey=misc_feature;gene=artM;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	1513569	1513625	.	-	.	ID=id3166;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=artM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1513779	1513844	.	-	.	ID=id3167;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=artM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1513875	1513940	.	-	.	ID=id3168;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=artM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1513980	1514045	.	-	.	ID=id3169;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=artM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1514090	1514806	.	-	.	ID=gene1341;Name=artQ;gbkey=Gene;gene=artQ;gene_biotype=protein_coding;locus_tag=YPO1350
AL590842.1	EMBL	CDS	1514090	1514806	.	-	0	ID=cds1311;Parent=gene1341;Dbxref=GOA:Q7CHH4,InterPro:IPR000515,InterPro:IPR010065,UniProtKB/TrEMBL:Q7CHH4,NCBI_GP:CAL20002.1;Name=CAL20002.1;Note=Similar to Escherichia coli arginine transport system permease protein ArtQ SW:ARTQ_ECOLI (P30861) (238 aa) fasta scores: E(): 0%2C 79.4%25 id in 238 aa%2C and to Haemophilus influenzae arginine transport system permease protein ArtQ SW:ARTQ_HAEIN (P45090) (221 aa) fasta scores: E(): 2e-32%2C 57.3%25 id in 227 aa;gbkey=CDS;gene=artQ;inference=protein motif:TMHMM:2.0;product=arginine transport system permease protein;protein_id=CAL20002.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1514138	1514203	.	-	.	ID=id3170;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=artQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1514198	1514431	.	-	.	ID=id3171;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 53.60%2C E-value 4.5e-12;gbkey=misc_feature;gene=artQ;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	1514342	1514428	.	-	.	ID=id3172;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;gene=artQ;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	1514453	1514503	.	-	.	ID=id3173;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=artQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1514606	1514671	.	-	.	ID=id3174;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=artQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1514669	1514713	.	-	.	ID=id3175;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=artQ;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	1514818	1515549	.	-	.	ID=gene1342;Name=artI;gbkey=Gene;gene=artI;gene_biotype=protein_coding;locus_tag=YPO1351
AL590842.1	EMBL	CDS	1514818	1515549	.	-	0	ID=cds1312;Parent=gene1342;Dbxref=GOA:Q0WH64,InterPro:IPR001638,InterPro:IPR005768,InterPro:IPR018313,UniProtKB/TrEMBL:Q0WH64,NCBI_GP:CAL20003.1;Name=CAL20003.1;Note=Similar to Escherichia coli arginine-binding periplasmic protein 1 precursor ArtI SW:ARTI_ECOLI (P30859) (243 aa) fasta scores: E(): 0%2C 74.1%25 id in 243 aa%2C and to Escherichia coli arginine-binding periplasmic protein 2 precursor ArtJ SW:ARTJ_ECOLI (P30860) (243 aa) fasta scores: E(): 0%2C 67.9%25 id in 243 aa. Similar to Yersinia pestis CDS YPO134 (172 aa)fasta scores: E(): 0%2C 72.1%25 identity in 154 aa overlap;gbkey=CDS;gene=artI;product=arginine-binding periplasmic protein 1 precursor;protein_id=CAL20003.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1514827	1515549	.	-	.	ID=id3176;Note=Pfam match to entry PF00497 SBP_bac_3%2C Bacterial extracellular solute-binding proteins%2C family 3%2C score 381.60%2C E-value 7.9e-111;gbkey=misc_feature;gene=artI;inference=protein motif:PF00497
AL590842.1	EMBL	sequence_feature	1515376	1515417	.	-	.	ID=id3177;Note=PS01039 Bacterial extracellular solute-binding proteins%2C family 3 signature.;gbkey=misc_feature;gene=artI;inference=protein motif:ProSite:PS01039
AL590842.1	EMBL	gene	1515570	1516298	.	-	.	ID=gene1343;Name=artP;gbkey=Gene;gene=artP;gene_biotype=protein_coding;locus_tag=YPO1352
AL590842.1	EMBL	CDS	1515570	1516298	.	-	0	ID=cds1313;Parent=gene1343;Dbxref=GOA:Q74VQ1,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q74VQ1,NCBI_GP:CAL20004.1;Name=CAL20004.1;Note=Similar to Escherichia coli arginine transport ATP-binding protein ArtP SW:ARTP_ECOLI (P30858) (242 aa) fasta scores: E(): 0%2C 86.8%25 id in 242 aa%2C and to Pasteurella multocida possible arginine transport ATP-binding protein ArtP TR:AAK02207 (EMBL:AE006047) (243 aa) fasta scores: E(): 0%2C 67.9%25 id in 243 aa;gbkey=CDS;gene=artP;inference=similar to sequence:INSDC:AE006047;product=arginine transport ATP-binding protein;protein_id=CAL20004.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1515648	1516217	.	-	.	ID=id3178;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 247.00%2C E-value 2.7e-70;gbkey=misc_feature;gene=artP;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1515831	1515875	.	-	.	ID=id3179;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=artP;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	1516173	1516196	.	-	.	ID=id3180;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=artP;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1516593	1517153	.	-	.	ID=gene1344;Name=YPO1353;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1353
AL590842.1	EMBL	CDS	1516593	1517153	.	-	0	ID=cds1314;Parent=gene1344;Dbxref=GOA:Q7CHH5,InterPro:IPR002701,InterPro:IPR008240,InterPro:IPR020822,PDB:2GBB,NCBI_GP:CAL20005.1;Name=CAL20005.1;Note=Similar to Erwinia herbicola monofunctional chorismate mutase precursor AroQ SW:CHMU_ERWHE (P42517) (181 aa) fasta scores: E(): 2.1e-16%2C 34.9%25 id in 169 aa%2Cand to Meloidogyne javanica chorismate mutase NC30 TR:Q9XTN9 (EMBL:AF095950) (191 aa) fasta scores: E(): 0.045%2C 25.8%25 id in 132 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF095950;product=putative chorismate mutase;protein_id=CAL20005.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1516842	1517099	.	-	.	ID=id3181;Note=Pfam match to entry PF01817 Chorismate_mut%2CChorismate mutase%2C score 36.80%2C E-value 4.8e-07;gbkey=misc_feature;inference=protein motif:PF01817
AL590842.1	EMBL	gene	1517323	1517898	.	-	.	ID=gene1345;Name=YPO1354;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1354
AL590842.1	EMBL	CDS	1517323	1517898	.	-	0	ID=cds1315;Parent=gene1345;Dbxref=UniProtKB/TrEMBL:Q7CHH6,NCBI_GP:CAL20006.1;Name=CAL20006.1;Note=Similar to Escherichia coli putative lipoprotein YbjP precursor SW:YBJP_ECOLI (P75818) (171 aa) fasta scores: E(): 3.9e-08%2C 45.8%25 id in 192 aa;gbkey=CDS;product=putative lipoprotein;protein_id=CAL20006.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1517842	1517874	.	-	.	ID=id3182;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	1517995	1519002	.	-	.	ID=gene1346;Name=YPO1355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1355
AL590842.1	EMBL	CDS	1517995	1519002	.	-	0	ID=cds1316;Parent=gene1346;Dbxref=GOA:Q74VQ4,InterPro:IPR001509,InterPro:IPR016040,UniProtKB/TrEMBL:Q74VQ4,NCBI_GP:CAL20007.1;Name=CAL20007.1;Note=Similar to Escherichia coli hypothetical protein B0868 TR:P75821 (EMBL:AE000188) (349 aa) fasta scores: E(): 0%2C 72.8%25 id in 335 aa%2C and to Yersinia pestis hypothetical protein MG1655 TR:Q9ZC81 (EMBL:AL031866) (338 aa) fasta scores: E(): 0%2C 46.2%25 id in 329 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=conserved hypothetical protein;protein_id=CAL20007.1;transl_table=11
AL590842.1	EMBL	gene	1519102	1520592	.	-	.	ID=gene1347;Name=YPO1356;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1356
AL590842.1	EMBL	CDS	1519102	1520592	.	-	0	ID=cds1317;Parent=gene1347;Dbxref=InterPro:IPR016040,UniProtKB/TrEMBL:Q7CHH7,NCBI_GP:CAL20008.1;Name=CAL20008.1;Note=Similar to Escherichia coli hypothetical protein YbjT SW:YBJT_ECOLI (P75822) (476 aa) fasta scores: E(): 0%2C62.3%25 id in 478 aa%2C and to Vibrio cholerae hypothetical protein VC1632 TR:Q9KRK8 (EMBL:AE004241) (478 aa) fasta scores: E(): 0%2C 47.0%25 id in 483 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004241;product=putative membrane protein;protein_id=CAL20008.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1519198	1519263	.	-	.	ID=id3183;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1520589	1521608	.	-	.	ID=gene1348;Name=ltaA;gbkey=Gene;gene=ltaA;gene_biotype=protein_coding;locus_tag=YPO1357
AL590842.1	EMBL	CDS	1520589	1521608	.	-	0	ID=cds1318;Parent=gene1348;Dbxref=GOA:Q7CHH8,InterPro:IPR001597,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR023603,UniProtKB/TrEMBL:Q7CHH8,NCBI_GP:CAL20009.1;Name=CAL20009.1;Note=Similar to Aeromonas jandaei L-allo-threonine aldolase LtaA SW:LTAA_AERJA (O07051) (338 aa) fasta scores: E(): 0%2C 55.9%25 id in 333 aa%2C and to Similar to Escherichia coli L-allo-threonine aldolase YbjU SW:LTAA_ECOLI (P75823) (333 aa) fasta scores: E(): 0%2C 69.2%25 id in 334 aa;gbkey=CDS;gene=ltaA;product=L-allo-threonine aldolase;protein_id=CAL20009.1;transl_table=11
AL590842.1	EMBL	gene	1521957	1523678	.	-	.	ID=gene1349;Name=poxB;gbkey=Gene;gene=poxB;gene_biotype=protein_coding;locus_tag=YPO1358
AL590842.1	EMBL	CDS	1521957	1523678	.	-	0	ID=cds1319;Parent=gene1349;Dbxref=GOA:Q7CHH9,InterPro:IPR000399,InterPro:IPR011766,InterPro:IPR012000,InterPro:IPR012001,InterPro:IPR029035,InterPro:IPR029061,UniProtKB/TrEMBL:Q7CHH9,NCBI_GP:CAL20010.1;Name=CAL20010.1;Note=Similar to Escherichia coli pyruvate dehydrogenase [cytochrome] PoxB SW:POXB_ECOLI (P07003) (572 aa) fasta scores: E(): 0%2C 79.2%25 id in 573 aa%2C and to Streptomyces coelicolor pyruvate dehydrogenase SC1A9.19 TR:Q9ZBT3 (EMBL:AL034446) (580 aa) fasta scores: E(): 0%2C 52.4%25 id in 571 aa;gbkey=CDS;gene=poxB;inference=similar to sequence:INSDC:AL034446;product=pyruvate dehydrogenase [cytochrome];protein_id=CAL20010.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1522101	1523642	.	-	.	ID=id3184;Note=Pfam match to entry PF00205 TPP_enzymes%2C Thiamine pyrophosphate enzymes%2C score 665.70%2C E-value 2.4e-206;gbkey=misc_feature;gene=poxB;inference=protein motif:PF00205
AL590842.1	EMBL	sequence_feature	1522371	1522430	.	-	.	ID=id3185;Note=PS00187 Thiamine pyrophosphate enzymes signature.;gbkey=misc_feature;gene=poxB;inference=protein motif:ProSite:PS00187
AL590842.1	EMBL	gene	1523822	1524844	.	-	.	ID=gene1350;Name=hcr;gbkey=Gene;gene=hcr;gene_biotype=protein_coding;locus_tag=YPO1359
AL590842.1	EMBL	CDS	1523822	1524844	.	-	0	ID=cds1320;Parent=gene1350;Dbxref=GOA:Q0WH56,InterPro:IPR001041,InterPro:IPR001433,InterPro:IPR001834,InterPro:IPR006058,InterPro:IPR008333,InterPro:IPR012675,InterPro:IPR017927,InterPro:IPR017938,UniProtKB/TrEMBL:Q0WH56,NCBI_GP:CAL20011.1;Name=CAL20011.1;Note=Similar to Escherichia coli NADH oxidoreductase Hcr SW:HCR_ECOLI (P75824) (322 aa) fasta scores: E(): 0%2C 59.5%25 id in 331 aa%2C and to Acinetobacter sp aniline dioxygenase reductase component atdA5 TR:Q44253 (EMBL:D86080) (336 aa) fasta scores: E(): 2.3e-20%2C 27.4%25 id in 325 aa;gbkey=CDS;gene=hcr;inference=similar to sequence:INSDC:D86080;product=putative oxidoreductase;protein_id=CAL20011.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1523840	1524076	.	-	.	ID=id3186;Note=Pfam match to entry PF00111 fer2%2C 2Fe-2S iron-sulfur cluster binding domains%2C score 50.50%2C E-value 3.6e-11;gbkey=misc_feature;gene=hcr;inference=protein motif:PF00111
AL590842.1	EMBL	sequence_feature	1523948	1523974	.	-	.	ID=id3187;Note=PS00197 2Fe-2S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;gene=hcr;inference=protein motif:ProSite:PS00197
AL590842.1	EMBL	sequence_feature	1524161	1524496	.	-	.	ID=id3188;Note=Pfam match to entry PF00175 oxidored_fad%2COxidoreductase FAD/NAD-binding domain%2C score 39.70%2C E-value 6.6e-08;gbkey=misc_feature;gene=hcr;inference=protein motif:PF00175
AL590842.1	EMBL	gene	1524958	1526610	.	-	.	ID=gene1351;Name=hcp;gbkey=Gene;gene=hcp;gene_biotype=protein_coding;locus_tag=YPO1360
AL590842.1	EMBL	CDS	1524958	1526610	.	-	0	ID=cds1321;Parent=gene1351;Dbxref=GOA:Q8ZGE1,InterPro:IPR004137,InterPro:IPR010048,InterPro:IPR011254,InterPro:IPR016099,InterPro:IPR016100,NCBI_GP:CAL20012.1;Name=CAL20012.1;Note=Similar to Desulfovibrio vulgaris iron-sulfur containing prismane protein Hcp SW:PRIS_DESVH (P31101) (553 aa) fasta scores: E(): 0%2C 40.3%25 id in 568 aa%2C and to Escherichia coli prismane protein homologue Hcp SW:PRIS_ECOLI (P75825) (550 aa) fasta scores: E(): 0%2C 75.2%25 id in 548 aa. The protein is only detected in E. coli when grown anaerobically in the presence of nitrate or nitrite.;gbkey=CDS;gene=hcp;product=putative prismane protein homologue;protein_id=CAL20012.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1526527	1526550	.	-	.	ID=id3189;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=hcp;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1526812	1527708	.	-	.	ID=gene1352;Name=YPO1361;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1361
AL590842.1	EMBL	CDS	1526812	1527708	.	-	0	ID=cds1322;Parent=gene1352;Dbxref=InterPro:IPR005642,UniProtKB/TrEMBL:Q7CHI0,NCBI_GP:CAL20013.1;Name=CAL20013.1;Note=Similar to Escherichia coli hypothetical protein YbjE SW:YBJE_ECOLI (P75826) (315 aa) fasta scores: E(): 0%2C71.5%25 id in 298 aa%2C and to Vibrio cholerae hypothetical protein VC1151 TR:Q9KSV5 (EMBL:AE004195) (301 aa) fasta scores: E(): 0%2C 50.2%25 id in 297 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004195;product=putative membrane protein;protein_id=CAL20013.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1526818	1526874	.	-	.	ID=id3190;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1527028	1527093	.	-	.	ID=id3191;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1527139	1527204	.	-	.	ID=id3192;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1527244	1527294	.	-	.	ID=id3193;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1527340	1527396	.	-	.	ID=id3194;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1527460	1527525	.	-	.	ID=id3195;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1527556	1527606	.	-	.	ID=id3196;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1527646	1527696	.	-	.	ID=id3197;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1528061	1529728	.	+	.	ID=gene1353;Name=YPO1362;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1362
AL590842.1	EMBL	CDS	1528061	1529728	.	+	0	ID=cds1323;Parent=gene1353;Dbxref=InterPro:IPR022602,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WH53,NCBI_GP:CAL20014.1;Name=CAL20014.1;Note=Similar to Escherichia coli hypothetical protein YbjD SW:YBJD_ECOLI (P75828) (552 aa) fasta scores: E(): 0%2C64.4%25 id in 554 aa%2C and to Vibrio cholerae hypothetical protein VCA0544 TR:Q9KM45 (EMBL:AE004385) (554 aa) fasta scores: E(): 0%2C 45.1%25 id in 554 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004385;product=conserved hypothetical protein;protein_id=CAL20014.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1528145	1528168	.	+	.	ID=id3198;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1529865	1530812	.	-	.	ID=gene1354;Name=YPO1363;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1363
AL590842.1	EMBL	CDS	1529865	1530812	.	-	0	ID=cds1324;Parent=gene1354;Dbxref=InterPro:IPR007488,UniProtKB/TrEMBL:Q7CHI1,NCBI_GP:CAL20015.1;Name=CAL20015.1;Note=Similar to Shigella flexneri large plasmid (pMYSH6000) encoded protein%2C essential for intercellular spreading and virulence%2C VirK TR:Q52617 (EMBL:D11025) (316 aa) fasta scores: E(): 0%2C 34.8%25 id in 296 aa%2C and to Escherichia coli hypothetical protein YbjX SW:YBJX_ECOLI (P75829) (330 aa) fasta scores: E(): 0%2C 45.4%25 id in 315 aa;gbkey=CDS;inference=similar to sequence:INSDC:D11025;product=putative virulence factor;protein_id=CAL20015.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	1531033	1531038	.	+	.	ID=id3199;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	1531046	1532161	.	+	.	ID=gene1355;Name=YPO1364;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1364
AL590842.1	EMBL	CDS	1531046	1532161	.	+	0	ID=cds1325;Parent=gene1355;Dbxref=GOA:P58411,InterPro:IPR006143,NCBI_GP:CAL20016.1;Name=CAL20016.1;Note=Similar to Escherichia coli hypothetical protein YbjY SW:YBJY_ECOLI (P75830) (371 aa) fasta scores: E(): 0%2C65.1%25 id in 364 aa%2C and to Pseudomonas syringae putative membrane fusion protein precursor MfpA TR:AAG22807 (EMBL:AF297012) (400 aa) fasta scores: E(): 2.6e-28%2C 42.4%25 id in 321 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF297012;product=putative HlyD family secretion protein;protein_id=CAL20016.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1531079	1531138	.	+	.	ID=id3200;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1531226	1532134	.	+	.	ID=id3201;Note=Pfam match to entry PF00529 HlyD%2C HlyD family secretion protein%2C score 29.40%2C E-value 8.2e-05;gbkey=misc_feature;inference=protein motif:PF00529
AL590842.1	EMBL	sequence_feature	1531973	1532038	.	+	.	ID=id3202;Note=Predicted helix-turn-helix motif with score 1088 (+2.89 SD) at aa 310-331%2C sequence IPLAALGDELGSNRYQVTVLKE;gbkey=misc_feature
AL590842.1	EMBL	gene	1532161	1534110	.	+	.	ID=gene1356;Name=YPO1365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1365
AL590842.1	EMBL	CDS	1532161	1534110	.	+	0	ID=cds1326;Parent=gene1356;Dbxref=GOA:Q7CHI2,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR003838,InterPro:IPR017871,InterPro:IPR017911,InterPro:IPR025857,InterPro:IPR027417,NCBI_GP:CAL20017.1;Name=CAL20017.1;Note=Similar to Escherichia coli hypothetical ABC transporter ATP-binding protein YbjZ SW:YBJZ_ECOLI (P75831) (648 aa) fasta scores: E(): 0%2C 69.5%25 id in 653 aa%2C and to Neisseria meningitidis ABC transporter%2C ATP-binding protein NMB0549 TR:Q9K0N7 (EMBL:AE002410) (644 aa) fasta scores: E(): 0%2C 51.0%25 id in 649 aa. CDS is similar to Yersinia pestis YPO3000 (678 aa) fasta scores: E(): 0%2C 53.8%25 identity in 669 aa overlap;gbkey=CDS;inference=similar to sequence:INSDC:AE002410;product=putative ABC transporter ATP-binding protein;protein_id=CAL20017.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1532260	1532817	.	+	.	ID=id3203;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 205.00%2C E-value 1.1e-57;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1532281	1532304	.	+	.	ID=id3204;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1532593	1532637	.	+	.	ID=id3205;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	1532971	1533039	.	+	.	ID=id3206;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1533418	1533477	.	+	.	ID=id3207;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1533733	1533801	.	+	.	ID=id3208;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1533889	1533957	.	+	.	ID=id3209;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1533985	1534053	.	+	.	ID=id3210;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1534391	1534654	.	-	.	ID=gene1357;Name=cspD;gbkey=Gene;gene=cspD;gene_biotype=protein_coding;gene_synonym=cspH;locus_tag=YPO1366
AL590842.1	EMBL	CDS	1534391	1534654	.	-	0	ID=cds1327;Parent=gene1357;Dbxref=GOA:Q74VR5,InterPro:IPR002059,InterPro:IPR011129,InterPro:IPR012156,InterPro:IPR012340,InterPro:IPR012751,InterPro:IPR019844,UniProtKB/TrEMBL:Q74VR5,NCBI_GP:CAL20018.1;Name=CAL20018.1;Note=Similar to Escherichia coli cold shock-like protein CspD SW:CSPD_ECOLI (P24245) (74 aa) fasta scores: E(): 3e-25%2C 87.3%25 id in 71 aa%2C and to Vibrio cholerae cold shock-like protein CspD TR:Q9KSW4 (EMBL:AE004194) (76 aa) fasta scores: E(): 1.1e-20%2C 77.5%25 id in 71 aa;gbkey=CDS;gene=cspD;inference=similar to sequence:INSDC:AE004194;product=cold shock-like protein;protein_id=CAL20018.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1534454	1534654	.	-	.	ID=id3211;Note=Pfam match to entry PF00313 CSD%2C 'Cold-shock' DNA-binding domain%2C score 134.60%2C E-value 1.6e-36;gbkey=misc_feature;gene=cspD;inference=protein motif:PF00313
AL590842.1	EMBL	sequence_feature	1534553	1534612	.	-	.	ID=id3212;Note=PS00352 'Cold-shock' DNA-binding domain signature.;gbkey=misc_feature;gene=cspD;inference=protein motif:ProSite:PS00352
AL590842.1	EMBL	gene	1535015	1535335	.	+	.	ID=gene1358;Name=YPO1367;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1367
AL590842.1	EMBL	CDS	1535015	1535335	.	+	0	ID=cds1328;Parent=gene1358;Dbxref=GOA:Q8ZGD5,InterPro:IPR003769,InterPro:IPR014719,InterPro:IPR022935,NCBI_GP:CAL20019.1;Name=CAL20019.1;Note=Similar to Escherichia coli hypothetical protein YljA SW:YLJA_ECOLI (P75832) (106 aa) fasta scores: E(): 0%2C84.9%25 id in 106 aa%2C and to Vibrio cholerae hypothetical protein VC1143 vc1143 TR:Q9KSW3 (EMBL:AE004194) (106 aa) fasta scores: E(): 1.3e-31%2C 67.0%25 id in 106 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004194;product=conserved hypothetical protein;protein_id=CAL20019.1;transl_table=11
AL590842.1	EMBL	gene	1535361	1537637	.	+	.	ID=gene1359;Name=clpA;gbkey=Gene;gene=clpA;gene_biotype=protein_coding;gene_synonym=lopD;locus_tag=YPO1368
AL590842.1	EMBL	CDS	1535361	1537637	.	+	0	ID=cds1329;Parent=gene1359;Dbxref=GOA:Q0WH47,InterPro:IPR001270,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR004176,InterPro:IPR013461,InterPro:IPR018368,InterPro:IPR019489,InterPro:IPR023150,InterPro:IPR027417,InterPro:IPR028299,UniProtKB/TrEMBL:Q0WH47,NCBI_GP:CAL20020.1;Name=CAL20020.1;Note=Similar to Escherichia coli ATP-dependent Clp protease ATP-binding subunit ClpA SW:CLPA_ECOLI (P15716) (758 aa) fasta scores: E(): 0%2C 89.432%25 id in 757 aa%2C and to Vibrio cholerae ATP-dependent Clp protease%2C ATP-binding subunit ClpA TR:Q9KSW2 (EMBL:AE004194) (756 aa) fasta scores: E(): 3.8e-209%2C 77.303%25 id in 749 aa;gbkey=CDS;gene=clpA;inference=similar to sequence:INSDC:AE004194;product=ATP-dependent Clp protease ATP-binding subunit;protein_id=CAL20020.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1535982	1536566	.	+	.	ID=id3213;Note=Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA)%2C score 71.30%2CE-value 2.1e-17;gbkey=misc_feature;gene=clpA;inference=protein motif:PF00004
AL590842.1	EMBL	sequence_feature	1535997	1536020	.	+	.	ID=id3214;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=clpA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1536261	1536299	.	+	.	ID=id3215;Note=PS00870 Chaperonins clpA/B signature 1.;gbkey=misc_feature;gene=clpA;inference=protein motif:ProSite:PS00870
AL590842.1	EMBL	sequence_feature	1536840	1536863	.	+	.	ID=id3216;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=clpA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1536909	1536965	.	+	.	ID=id3217;Note=PS00871 Chaperonins clpA/B signature 2.;gbkey=misc_feature;gene=clpA;inference=protein motif:ProSite:PS00871
AL590842.1	EMBL	repeat_region	1537785	1538496	.	+	.	ID=id3218;Note=Contains a 'A' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	1537930	1538388	.	+	.	ID=gene1360;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO1369
AL590842.1	EMBL	CDS	1537930	1538388	.	+	0	ID=cds1330;Parent=gene1360;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL20021.1;Name=CAL20021.1;Note=Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL20021.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1537984	1538295	.	+	.	ID=id3219;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	1538760	1538978	.	-	.	ID=gene1361;Name=infA;gbkey=Gene;gene=infA;gene_biotype=protein_coding;locus_tag=YPO1370
AL590842.1	EMBL	CDS	1538760	1538978	.	-	0	ID=cds1331;Parent=gene1361;Dbxref=GOA:P65115,InterPro:IPR004368,InterPro:IPR006196,InterPro:IPR012340,InterPro:IPR022967,NCBI_GP:CAL20022.1;Name=CAL20022.1;Note=Similar to Escherichia coli translation initiation factor IF-1 InfA SW:IF1_ECOLI (P02998) (71 aa) fasta scores: E(): 6.7e-27%2C 98.6%25 id in 71 aa%2C and to Vibrio cholerae translation initiation factor IF-1 InfA TR:Q9KRA5 (EMBL:AE004251) (72 aa) fasta scores: E(): 1.1e-26%2C 95.8%25 id in 72 aa;gbkey=CDS;gene=infA;inference=similar to sequence:INSDC:AE004251;product=translation initiation factor IF-1;protein_id=CAL20022.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1538763	1538975	.	-	.	ID=id3220;Note=Pfam match to entry PF00575 S1%2C S1 RNA binding domain%2C score 43.10%2C E-value 2.8e-10;gbkey=misc_feature;gene=infA;inference=protein motif:PF00575
AL590842.1	EMBL	gene	1539144	1539854	.	-	.	ID=gene1362;Name=aat;gbkey=Gene;gene=aat;gene_biotype=protein_coding;locus_tag=YPO1371
AL590842.1	EMBL	CDS	1539144	1539854	.	-	0	ID=cds1332;Parent=gene1362;Dbxref=GOA:Q8ZGD2,InterPro:IPR004616,InterPro:IPR016181,NCBI_GP:CAL20023.1;Name=CAL20023.1;Note=Similar to Escherichia coli leucyl/phenylalanyl-tRNA--protein transferase Aat SW:LPTP_ECOLI (P23885) (234 aa) fasta scores: E(): 0%2C 68.1%25 id in 232 aa%2C and to Vibrio cholerae leucyl/phenylalanyl-tRNA--protein transferase VC1735 TR:Q9KRA7 (EMBL:AE004251) (243 aa) fasta scores: E(): 0%2C49.1%25 id in 230 aa;gbkey=CDS;gene=aat;inference=similar to sequence:INSDC:AE004251;product=putative leucyl/phenylalanyl-tRNA-protein transferase;protein_id=CAL20023.1;transl_table=11
AL590842.1	EMBL	gene	1540073	1541797	.	-	.	ID=gene1363;Name=cydC;gbkey=Gene;gene=cydC;gene_biotype=protein_coding;gene_synonym=mdrA,mdrH,surB;locus_tag=YPO1372
AL590842.1	EMBL	CDS	1540073	1541797	.	-	0	ID=cds1333;Parent=gene1363;Dbxref=GOA:Q7CHI4,InterPro:IPR001140,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR011527,InterPro:IPR014223,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CHI4,NCBI_GP:CAL20024.1;Name=CAL20024.1;Note=Similar to Escherichia coli transport ATP-binding protein CydC SW:CYDC_ECOLI (P23886) (573 aa) fasta scores: E(): 0%2C 65.6%25 id in 572 aa%2C and to Shigella flexneri putative ABC transporter CydC TR:O52574 (EMBL:AF040718) (573 aa) fasta scores: E(): 0%2C 64.9%25 id in 572 aa. In E. coli%2C functional CydC is necessary for the formation of the cytochrome bd quinol oxidase;gbkey=CDS;gene=cydC;inference=similar to sequence:INSDC:AF040718;product=transport ATP-binding protein;protein_id=CAL20024.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1540151	1540702	.	-	.	ID=id3221;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 192.20%2C E-value 8.2e-54;gbkey=misc_feature;gene=cydC;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1540328	1540372	.	-	.	ID=id3222;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=cydC;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	1540658	1540681	.	-	.	ID=id3223;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=cydC;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1540895	1540960	.	-	.	ID=id3224;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1541006	1541071	.	-	.	ID=id3225;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1541252	1541317	.	-	.	ID=id3226;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1541333	1541398	.	-	.	ID=id3227;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1541615	1541680	.	-	.	ID=id3228;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1541800	1543584	.	-	.	ID=gene1364;Name=cydD;gbkey=Gene;gene=cydD;gene_biotype=protein_coding;gene_synonym=htrD;locus_tag=YPO1373
AL590842.1	EMBL	CDS	1541800	1543584	.	-	0	ID=cds1334;Parent=gene1364;Dbxref=GOA:Q7CHI5,InterPro:IPR001140,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR011527,InterPro:IPR014216,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CHI5,NCBI_GP:CAL20025.1;Name=CAL20025.1;Note=Similar to Escherichia coli transport ATP-binding protein CydD SW:CYDD_ECOLI (P29018) (588 aa) fasta scores: E(): 0%2C 65.6%25 id in 588 aa%2C and to Providencia stuartii transport ATP-binding protein AarD SW:AARD_PROST (Q52402) (588 aa) fasta scores: E(): 0%2C 69.9%25 id in 588 aa. In E. coli%2C functional CydD is necessary for the formation of the cytochrome bd quinol oxidase;gbkey=CDS;gene=cydD;inference=protein motif:TMHMM:2.0;product=transport ATP-binding protein;protein_id=CAL20025.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1541890	1542441	.	-	.	ID=id3229;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 206.20%2C E-value 5.2e-58;gbkey=misc_feature;gene=cydD;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1542067	1542111	.	-	.	ID=id3230;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=cydD;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	1542397	1542420	.	-	.	ID=id3231;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=cydD;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1542670	1543497	.	-	.	ID=id3232;Note=Pfam match to entry PF00664 ABC_membrane%2C ABC transporter transmembrane region.%2C score 128.90%2C E-value 9.5e-35;gbkey=misc_feature;gene=cydD;inference=protein motif:PF00664
AL590842.1	EMBL	sequence_feature	1542676	1542732	.	-	.	ID=id3233;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1542763	1542828	.	-	.	ID=id3234;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1543006	1543071	.	-	.	ID=id3235;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1543084	1543134	.	-	.	ID=id3236;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1543321	1543386	.	-	.	ID=id3237;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1543432	1543497	.	-	.	ID=id3238;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=cydD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1544025	1544987	.	-	.	ID=gene1365;Name=trxB;gbkey=Gene;gene=trxB;gene_biotype=protein_coding;locus_tag=YPO1374
AL590842.1	EMBL	CDS	1544025	1544987	.	-	0	ID=cds1335;Parent=gene1365;Dbxref=GOA:Q7CHI6,InterPro:IPR000103,InterPro:IPR001327,InterPro:IPR005982,InterPro:IPR008255,InterPro:IPR013027,InterPro:IPR023753,UniProtKB/TrEMBL:Q7CHI6,NCBI_GP:CAL20026.1;Name=CAL20026.1;Note=Similar to Escherichia coli thioredoxin reductase TrxB SW:TRXB_ECOLI (P09625) (320 aa) fasta scores: E(): 0%2C85.3%25 id in 319 aa%2C and to Vibrio cholerae thioredoxin reductase VC1182 TR:Q9KSS4 (EMBL:AE004198) (318 aa) fasta scores: E(): 0%2C 84.4%25 id in 314 aa;gbkey=CDS;gene=trxB;inference=similar to sequence:INSDC:AE004198;product=thioredoxin reductase;protein_id=CAL20026.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1544127	1544963	.	-	.	ID=id3239;Note=Pfam match to entry PF00070 pyr_redox%2C Pyridine nucleotide-disulphide oxidoreductase%2C score 205.50%2C E-value 6.4e-60;gbkey=misc_feature;gene=trxB;inference=protein motif:PF00070
AL590842.1	EMBL	sequence_feature	1544520	1544582	.	-	.	ID=id3240;Note=PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site.;gbkey=misc_feature;gene=trxB;inference=protein motif:ProSite:PS00573
AL590842.1	EMBL	gene	1545754	1546248	.	+	.	ID=gene1366;Name=alsB;gbkey=Gene;gene=alsB;gene_biotype=protein_coding;gene_synonym=ihb,livR,lrp,oppI;locus_tag=YPO1375
AL590842.1	EMBL	CDS	1545754	1546248	.	+	0	ID=cds1336;Parent=gene1366;Dbxref=GOA:Q7CHI7,InterPro:IPR000485,InterPro:IPR011008,InterPro:IPR011991,InterPro:IPR019885,InterPro:IPR019887,InterPro:IPR019888,UniProtKB/TrEMBL:Q7CHI7,NCBI_GP:CAL20027.1;Name=CAL20027.1;Note=Similar to Escherichia coli and Enterobacter aerogenes leucine-responsive regulatory protein Lrp SW:LRP_ECOLI (P19494) (163 aa) fasta scores: E(): 0%2C 93.9%25 id in 163 aa%2C and to Salmonella typhimurium leucine-responsive regulatory protein Lrp SW:LRP_SALTY (P37403) (163 aa) fasta scores: E(): 0%2C 93.9%25 id in 163 aa;gbkey=CDS;gene=alsB;product=leucine-responsive regulatory protein;protein_id=CAL20027.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1545841	1545921	.	+	.	ID=id3241;Note=PS00519 Bacterial regulatory proteins%2C asnC family signature.;gbkey=misc_feature;gene=alsB;inference=protein motif:ProSite:PS00519
AL590842.1	EMBL	sequence_feature	1545859	1546170	.	+	.	ID=id3242;Note=Pfam match to entry PF01037 ASNC_trans_reg%2C AsnC family%2C score 191.70%2C E-value 1.2e-53;gbkey=misc_feature;gene=alsB;inference=protein motif:PF01037
AL590842.1	EMBL	gene	1546371	1550288	.	+	.	ID=gene1367;Name=ftsK;gbkey=Gene;gene=ftsK;gene_biotype=protein_coding;locus_tag=YPO1376
AL590842.1	EMBL	CDS	1546371	1550288	.	+	0	ID=cds1337;Parent=gene1367;Dbxref=GOA:Q8ZGC7,InterPro:IPR002543,InterPro:IPR018541,InterPro:IPR025199,InterPro:IPR027417,NCBI_GP:CAL20028.1;Name=CAL20028.1;Note=Similar to Escherichia coli cell division protein FtsK SW:FTSK_ECOLI (P46889) (1329 aa) fasta scores: E(): 0%2C54.1%25 id in 1411 aa%2C and to Vibrio cholerae putative cell division protein FtsK TR:Q9KQU5 (EMBL:AE004266) (960 aa) fasta scores: E(): 0%2C 41.5%25 id in 1298 aa;gbkey=CDS;gene=ftsK;inference=similar to sequence:INSDC:AE004266;product=putative cell division protein;protein_id=CAL20028.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1546434	1546502	.	+	.	ID=id3243;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=ftsK;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1546596	1546664	.	+	.	ID=id3244;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=ftsK;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1546701	1546769	.	+	.	ID=id3245;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=ftsK;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1546827	1546895	.	+	.	ID=id3246;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=ftsK;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1546908	1546976	.	+	.	ID=id3247;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=ftsK;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1548537	1548581	.	+	.	ID=id3248;Note=3x repeat: QSTYG;gbkey=misc_feature;gene=ftsK
AL590842.1	EMBL	sequence_feature	1549134	1549778	.	+	.	ID=id3249;Note=Pfam match to entry PF01580 FtsK_SpoIIIE%2CFtsK/SpoIIIE family%2C score 336.80%2C E-value 2.4e-97;gbkey=misc_feature;gene=ftsK;inference=protein motif:PF01580
AL590842.1	EMBL	sequence_feature	1549266	1549289	.	+	.	ID=id3250;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ftsK;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1550481	1551089	.	+	.	ID=gene1368;Name=lolA;gbkey=Gene;gene=lolA;gene_biotype=protein_coding;gene_synonym=lplA;locus_tag=YPO1377
AL590842.1	EMBL	CDS	1550481	1551089	.	+	0	ID=cds1338;Parent=gene1368;Dbxref=GOA:Q8ZGC6,InterPro:IPR004564,InterPro:IPR018323,InterPro:IPR029046,NCBI_GP:CAL20029.1;Name=CAL20029.1;Note=Similar to Escherichia coli outer-membrane lipoproteins carrier protein precursor LolA SW:LOLA_ECOLI (P39178) (204 aa) fasta scores: E(): 0%2C 70.3%25 id in 202 aa%2Cand to Haemophilus influenzae outer-membrane lipoproteins carrier protein precursor LolA SW:LOLA_HAEIN (P45263) (205 aa) fasta scores: E(): 0%2C 47.3%25 id in 203 aa;gbkey=CDS;gene=lolA;product=putative outer-membrane lipoproteins carrier protein;protein_id=CAL20029.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	1551091	1551095	.	+	.	ID=id3251;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	1551100	1552443	.	+	.	ID=gene1369;Name=YPO1378;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1378
AL590842.1	EMBL	CDS	1551100	1552443	.	+	0	ID=cds1339;Parent=gene1369;Dbxref=GOA:Q7CHI8,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR008921,InterPro:IPR021886,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CHI8,NCBI_GP:CAL20030.1;Name=CAL20030.1;Note=Similar to Escherichia coli hypothetical protein YcaJ SW:YCAJ_ECOLI (P45526) (447 aa) fasta scores: E(): 0%2C86.1%25 id in 447 aa%2C and to Haemophilus influenzae hypothetical protein HI1590 SW:YCAJ_HAEIN (P45262) (446 aa) fasta scores: E(): 0%2C 70.7%25 id in 447 aa;gbkey=CDS;product=putative ATPase protein;protein_id=CAL20030.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1551253	1551762	.	+	.	ID=id3252;Note=Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA)%2C score 44.70%2CE-value 2.1e-09;gbkey=misc_feature;inference=protein motif:PF00004
AL590842.1	EMBL	sequence_feature	1551268	1551291	.	+	.	ID=id3253;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1552685	1553977	.	+	.	ID=gene1370;Name=serS;gbkey=Gene;gene=serS;gene_biotype=protein_coding;locus_tag=YPO1379
AL590842.1	EMBL	CDS	1552685	1553977	.	+	0	ID=cds1340;Parent=gene1370;Dbxref=GOA:Q8ZGC4,InterPro:IPR002314,InterPro:IPR002317,InterPro:IPR006195,InterPro:IPR010978,InterPro:IPR015866,NCBI_GP:CAL20031.1;Name=CAL20031.1;Note=Similar to Escherichia coli seryl-tRNA synthetase SerS SW:SYS_ECOLI (P09156) (430 aa) fasta scores: E(): 0%2C84.9%25 id in 430 aa%2C and to Haemophilus influenzae seryl-tRNA synthetase SerS SW:SYS_HAEIN (P43833) (429 aa) fasta scores: E(): 0%2C 75.9%25 id in 431 aa;gbkey=CDS;gene=serS;product=seryl-tRNA synthetase;protein_id=CAL20031.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1552685	1552825	.	+	.	ID=id3254;Note=Pfam match to entry PF02403 Seryl_tRNA_N%2C %2C score 60.30%2C E-value 4.2e-14;gbkey=misc_feature;gene=serS;inference=protein motif:PF02403
AL590842.1	EMBL	sequence_feature	1552886	1553956	.	+	.	ID=id3255;Note=Pfam match to entry PF00587 tRNA-synt_2b%2C tRNA synthetase class II (G%2C H%2C P%2C S and T)%2C score 381.30%2CE-value 9.9e-111;gbkey=misc_feature;gene=serS;inference=protein motif:PF00587
AL590842.1	EMBL	sequence_feature	1553483	1553557	.	+	.	ID=id3256;Note=PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.;gbkey=misc_feature;gene=serS;inference=protein motif:ProSite:PS00179
AL590842.1	EMBL	gene	1554240	1555388	.	+	.	ID=gene1371;Name=YPO1380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1380
AL590842.1	EMBL	CDS	1554240	1555388	.	+	0	ID=cds1341;Parent=gene1371;Dbxref=GOA:Q8ZGC3,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,InterPro:IPR023745,NCBI_GP:CAL20032.1;Name=CAL20032.1;Note=Similar to Escherichia coli hypothetical protein YcaD SW:YCAD_ECOLI (P21503) (382 aa) fasta scores: E(): 0%2C65.7%25 id in 382 aa%2C and to Vibrio cholerae hypothetical protein VCA0753 TR:Q9KLJ1 (EMBL:AE004404) (384 aa) fasta scores: E(): 2.6e-30%2C 31.0%25 id in 378 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004404;product=putative membrane protein;protein_id=CAL20032.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1554360	1554428	.	+	.	ID=id3257;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1554447	1554515	.	+	.	ID=id3258;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1554528	1554596	.	+	.	ID=id3259;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1554630	1554698	.	+	.	ID=id3260;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1554711	1554770	.	+	.	ID=id3261;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1554849	1554917	.	+	.	ID=id3262;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1554945	1554998	.	+	.	ID=id3263;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1555032	1555091	.	+	.	ID=id3264;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1555104	1555172	.	+	.	ID=id3265;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1555197	1555265	.	+	.	ID=id3266;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1555293	1555346	.	+	.	ID=id3267;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1555542	1556276	.	-	.	ID=gene1372;Name=act;gbkey=Gene;gene=act;gene_biotype=protein_coding;gene_synonym=pflA;locus_tag=YPO1381
AL590842.1	EMBL	CDS	1555542	1556276	.	-	0	ID=cds1342;Parent=gene1372;Dbxref=GOA:Q0WH34,InterPro:IPR001989,InterPro:IPR007197,InterPro:IPR012838,UniProtKB/TrEMBL:Q0WH34,NCBI_GP:CAL20033.1;Name=CAL20033.1;Note=Similar to Escherichia coli pyruvate formate-lyase 1 activating enzyme PflA SW:PFLA_ECOLI (P09374) (245 aa) fasta scores: E(): 0%2C 88.5%25 id in 244 aa%2C and to Pasteurella multocida Act TR:AAK02161 (EMBL:AE006043) (246 aa) fasta scores: E(): 0%2C 76.6%25 id in 244 aa;gbkey=CDS;gene=act;inference=similar to sequence:INSDC:AE006043;product=pyruvate formate-lyase 1 activating enzyme;protein_id=CAL20033.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1556166	1556231	.	-	.	ID=id3268;Note=PS01087 Radical activating enzymes signature.;gbkey=misc_feature;gene=act;inference=protein motif:ProSite:PS01087
AL590842.1	EMBL	sequence_feature	1556166	1556183	.	-	.	ID=id3269;Note=PS00190 Cytochrome c family heme-binding site signature.;gbkey=misc_feature;gene=act;inference=protein motif:ProSite:PS00190
AL590842.1	EMBL	sequence_feature	1556169	1556264	.	-	.	ID=id3270;Note=Pfam match to entry PF02143 RADICAL_ACTIVATING%2CRadical activating enzymes%2C score 59.80%2C E-value 6e-14;gbkey=misc_feature;gene=act;inference=protein motif:PF02143
AL590842.1	EMBL	gene	1557263	1557937	.	+	.	ID=gene1373;Name=YPO1382;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1382
AL590842.1	EMBL	CDS	1557263	1557937	.	+	0	ID=cds1343;Parent=gene1373;Dbxref=GOA:Q7CHJ1,InterPro:IPR002654,UniProtKB/TrEMBL:Q7CHJ1,NCBI_GP:CAL20034.1;Name=CAL20034.1;Note=Weak similarity to Pasteurella haemolytica LPS biosynthesis protein LpsA SW:LPSA_PASHA (Q05770) (263 aa) fasta scores: E(): 0.04%2C 27.0%25 id in 159 aa%2C and to Actinobacillus pleuropneumoniae putative LPS biosynthesis protein TR:Q9X6Q5 (EMBL:AF143905) (224 aa) fasta scores: E(): 0.041%2C 28.5%25 id in 186 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF143905;product=hypothetical protein;protein_id=CAL20034.1;transl_table=11
AL590842.1	EMBL	gene	1558055	1560337	.	-	.	ID=gene1374;Name=pfl;gbkey=Gene;gene=pfl;gene_biotype=protein_coding;gene_synonym=pflB;locus_tag=YPO1383
AL590842.1	EMBL	CDS	1558055	1560337	.	-	0	ID=cds1344;Parent=gene1374;Dbxref=GOA:Q0WH32,InterPro:IPR001150,InterPro:IPR004184,InterPro:IPR005949,InterPro:IPR019777,UniProtKB/TrEMBL:Q0WH32,NCBI_GP:CAL20035.1;Name=CAL20035.1;Note=Similar to Escherichia coli formate acetyltransferase 1 PflB SW:PFLB_ECOLI (P09373) (759 aa) fasta scores: E(): 0%2C 90.5%25 id in 759 aa%2C and to Vibrio cholerae formate acetyltransferase VC1866 TR:Q9KQY1 (EMBL:AE004262) (787 aa) fasta scores: E(): 0%2C 82.6%25 id in 758 aa;gbkey=CDS;gene=pfl;inference=similar to sequence:INSDC:AE004262;product=formate acetyltransferase 1;protein_id=CAL20035.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1558112	1558450	.	-	.	ID=id3271;Note=Pfam match to entry PF01228 Gly_radical%2C Glycine radical%2C score 237.20%2C E-value 2.4e-67;gbkey=misc_feature;gene=pfl;inference=protein motif:PF01228
AL590842.1	EMBL	sequence_feature	1558124	1558150	.	-	.	ID=id3272;Note=PS00850 Glycine radical signature.;gbkey=misc_feature;gene=pfl;inference=protein motif:ProSite:PS00850
AL590842.1	EMBL	gene	1560393	1561250	.	-	.	ID=gene1375;Name=focA;gbkey=Gene;gene=focA;gene_biotype=protein_coding;locus_tag=YPO1384
AL590842.1	EMBL	CDS	1560393	1561250	.	-	0	ID=cds1345;Parent=gene1375;Dbxref=GOA:Q7CHJ2,InterPro:IPR000292,InterPro:IPR023271,InterPro:IPR023999,InterPro:IPR024002,UniProtKB/TrEMBL:Q7CHJ2,NCBI_GP:CAL20036.1;Name=CAL20036.1;Note=Similar to Escherichia coli probable formate transporter 1 FocA SW:FOCA_ECOLI (P21501) (285 aa) fasta scores: E(): 0%2C 82.1%25 id in 285 aa%2C and to Haemophilus influenzae probable formate transporter FocA SW:FOCA_HAEIN (P43756) (284 aa) fasta scores: E(): 0%2C 56.1%25 id in 264 aa;gbkey=CDS;gene=focA;inference=protein motif:TMHMM:2.0;product=putative formate transporter 1;protein_id=CAL20036.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1560402	1561229	.	-	.	ID=id3273;Note=Pfam match to entry PF01226 Form_Nir_trans%2CFormate/nitrite transporter%2C score 560.20%2C E-value 1.4e-164;gbkey=misc_feature;gene=focA;inference=protein motif:PF01226
AL590842.1	EMBL	sequence_feature	1560417	1560482	.	-	.	ID=id3274;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=focA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1560600	1560665	.	-	.	ID=id3275;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=focA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1560702	1560767	.	-	.	ID=id3276;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=focA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1560717	1560749	.	-	.	ID=id3277;Note=PS01006 Formate and nitrite transporters signature 2.;gbkey=misc_feature;gene=focA;inference=protein motif:ProSite:PS01006
AL590842.1	EMBL	sequence_feature	1560843	1560908	.	-	.	ID=id3278;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=focA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1560969	1561034	.	-	.	ID=id3279;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=focA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1560975	1561004	.	-	.	ID=id3280;Note=PS01005 Formate and nitrite transporters signature 1.;gbkey=misc_feature;gene=focA;inference=protein motif:ProSite:PS01005
AL590842.1	EMBL	sequence_feature	1561080	1561145	.	-	.	ID=id3281;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=focA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1561947	1563713	.	-	.	ID=gene1376;Name=YPO1385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1385
AL590842.1	EMBL	CDS	1561947	1563713	.	-	0	ID=cds1346;Parent=gene1376;Dbxref=InterPro:IPR003776,UniProtKB/TrEMBL:Q0WH30,NCBI_GP:CAL20037.1;Name=CAL20037.1;Note=Similar to Escherichia coli hypothetical protein YcaO SW:YCAO_ECOLI (P75838) (586 aa) fasta scores: E(): 0%2C80.2%25 id in 586 aa%2C and to Haemophilus influenzae hypothetical protein HI1265 SW:YCAO_HAEIN (P44144) (587 aa) fasta scores: E(): 0%2C 67.8%25 id in 583 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL20037.1;transl_table=11
AL590842.1	EMBL	gene	1563862	1564899	.	+	.	ID=gene1377;Name=ansB;gbkey=Gene;gene=ansB;gene_biotype=protein_coding;locus_tag=YPO1386
AL590842.1	EMBL	CDS	1563862	1564899	.	+	0	ID=cds1347;Parent=gene1377;Dbxref=GOA:Q7CHJ3,InterPro:IPR004550,InterPro:IPR006034,InterPro:IPR020827,InterPro:IPR027473,InterPro:IPR027474,InterPro:IPR027475,UniProtKB/TrEMBL:Q7CHJ3,NCBI_GP:CAL20038.1;Name=CAL20038.1;Note=Similar to Escherichia coli L-asparaginase II precursor AnsB SW:ASG2_ECOLI (P00805) (348 aa) fasta scores: E(): 0%2C 73.6%25 id in 348 aa%2C and to Haemophilus influenzae probable L-asparaginase periplasmic precursor AnsB SW:ASG2_HAEIN (P43843) (349 aa) fasta scores: E(): 0%2C63.9%25 id in 349 aa;gbkey=CDS;gene=ansB;product=putative L-asparaginase II precursor;protein_id=CAL20038.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1563943	1563969	.	+	.	ID=id3282;Note=PS00144 Asparaginase / glutaminase active site signature 1.;gbkey=misc_feature;gene=ansB;inference=protein motif:ProSite:PS00144
AL590842.1	EMBL	sequence_feature	1563961	1564881	.	+	.	ID=id3283;Note=Pfam match to entry PF00710 Asparaginase%2CAsparaginase%2C score 531.70%2C E-value 5e-156;gbkey=misc_feature;gene=ansB;inference=protein motif:PF00710
AL590842.1	EMBL	sequence_feature	1564171	1564203	.	+	.	ID=id3284;Note=PS00917 Asparaginase / glutaminase active site signature 2.;gbkey=misc_feature;gene=ansB;inference=protein motif:ProSite:PS00917
AL590842.1	EMBL	gene	1565168	1566262	.	+	.	ID=gene1378;Name=YPO1387;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1387
AL590842.1	EMBL	CDS	1565168	1566262	.	+	0	ID=cds1348;Parent=gene1378;Dbxref=GOA:Q7CHJ4,InterPro:IPR005594,InterPro:IPR008126,InterPro:IPR008635,InterPro:IPR011049,UniProtKB/TrEMBL:Q7CHJ4,NCBI_GP:CAL20039.1;Name=CAL20039.1;Note=Similar to Yersinia enterocolitica invasin precursor YadA SW:YADA_YEREN (P31489) (455 aa) fasta scores: E(): 6.6e-17%2C 30.7%25 id in 368 aa%2C and to Yersinia pseudotuberculosis invasin precursor YadA SW:YADA_YERPS (P10858) (434 aa) fasta scores: E(): 5.9e-11%2C 28.3%25 id in 357 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL20039.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1565576	1565800	.	+	.	ID=id3285;Note=5x degenerate repeat: (K/Q)(A/S)(T/S)ET(L/I)N(N/S)AN(I/T/S)Y(T/V)D(N/S);gbkey=misc_feature
AL590842.1	EMBL	gene	1566262	1568130	.	+	.	ID=gene1379;Name=YPO1388;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1388
AL590842.1	EMBL	CDS	1566262	1568130	.	+	0	ID=cds1349;Parent=gene1379;Dbxref=InterPro:IPR005594,UniProtKB/TrEMBL:Q7CHJ5,NCBI_GP:CAL20040.1;Name=CAL20040.1;Note=C-terminal region of the CDS is similar to Yersinia enterocolitica invasin precursor YadA SW:YADA_YEREN (P31489) (455 aa) fasta scores: E(): 3.5e-10%2C 26.8%25 id in 355 aa. Internal region of the CDS is similar to the N-terminus Yersinia pestis putative autotransporter protein YapD TR:CAC14223 (EMBL:AJ277627) (1457 aa) fasta scores: E(): 8.8e-06%2C 23.6%25 id in 559 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ277627;product=putative exported protein;protein_id=CAL20040.1;transl_table=11
AL590842.1	EMBL	gene	1568497	1569582	.	+	.	ID=gene1380;Name=serC;gbkey=Gene;gene=serC;gene_biotype=protein_coding;locus_tag=YPO1389
AL590842.1	EMBL	CDS	1568497	1569582	.	+	0	ID=cds1350;Parent=gene1380;Dbxref=GOA:Q8ZGB4,InterPro:IPR000192,InterPro:IPR003248,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR020578,InterPro:IPR022278,NCBI_GP:CAL20041.1;Name=CAL20041.1;Note=Similar to Yersinia enterocolitica phosphoserine aminotransferase SerC SW:SERC_YEREN (P19689) (361 aa) fasta scores: E(): 0%2C 93.9%25 id in 361 aa%2C and to Escherichia coli phosphoserine aminotransferase SerC SW:SERC_ECOLI (P23721) (361 aa) fasta scores: E(): 0%2C 76.1%25 id in 360 aa;gbkey=CDS;gene=serC;product=phosphoserine aminotransferase;protein_id=CAL20041.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1568536	1569543	.	+	.	ID=id3286;Note=Pfam match to entry PF00266 aminotran_5%2CAminotransferases class-V%2C score 359.50%2C E-value 3.5e-104;gbkey=misc_feature;gene=serC;inference=protein motif:PF00266
AL590842.1	EMBL	sequence_feature	1569058	1569117	.	+	.	ID=id3287;Note=PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site.;gbkey=misc_feature;gene=serC;inference=protein motif:ProSite:PS00595
AL590842.1	EMBL	gene	1569745	1571031	.	+	.	ID=gene1381;Name=aroA;gbkey=Gene;gene=aroA;gene_biotype=protein_coding;locus_tag=YPO1390
AL590842.1	EMBL	CDS	1569745	1571031	.	+	0	ID=cds1351;Parent=gene1381;Dbxref=GOA:Q60112,InterPro:IPR001986,InterPro:IPR006264,InterPro:IPR013792,InterPro:IPR023193,NCBI_GP:CAL20042.1;Name=CAL20042.1;Note=Previously sequenced as Yersinia pestis 3-phosphoshikimate 1-carboxyvinyltransferase AroA SW:AROA_YERPE (Q60112) (424 aa) fasta scores: E(): 0%2C100.0%25 id in 423 aa. Similar to Yersinia enterocolitica 3-phosphoshikimate 1-carboxyvinyltransferase AroA SW:AROA_YEREN (P19688) (427 aa) fasta scores: E(): 0%2C 91.1%25 id in 428 aa;gbkey=CDS;gene=aroA;product=3-phosphoshikimate 1-carboxyvinyltransferase;protein_id=CAL20042.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1569763	1571007	.	+	.	ID=id3288;Note=Pfam match to entry PF00275 EPSP_syntase%2C EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)%2Cscore 715.90%2C E-value 1.9e-211;gbkey=misc_feature;gene=aroA;inference=protein motif:PF00275
AL590842.1	EMBL	sequence_feature	1570015	1570059	.	+	.	ID=id3289;Note=PS00104 EPSP synthase signature 1.;gbkey=misc_feature;gene=aroA;inference=protein motif:ProSite:PS00104
AL590842.1	EMBL	sequence_feature	1570759	1570815	.	+	.	ID=id3290;Note=PS00885 EPSP synthase signature 2.;gbkey=misc_feature;gene=aroA;inference=protein motif:ProSite:PS00885
AL590842.1	EMBL	ribosome_entry_site	1571331	1571337	.	+	.	ID=id3291;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	1571344	1572036	.	+	.	ID=gene1382;Name=cmk;gbkey=Gene;gene=cmk;gene_biotype=protein_coding;gene_synonym=mssA;locus_tag=YPO1391
AL590842.1	EMBL	CDS	1571344	1572036	.	+	0	ID=cds1352;Parent=gene1382;Dbxref=GOA:Q8ZGB3,InterPro:IPR003136,InterPro:IPR011994,InterPro:IPR027417,NCBI_GP:CAL20043.1;Name=CAL20043.1;Note=Similar to Escherichia coli cytidylate kinase Cmk SW:KCY_ECOLI (P23863) (227 aa) fasta scores: E(): 0%2C 84.5%25 id in 226 aa%2C and to Vibrio cholerae cytidylate kinase VC1916 TR:Q9KQT2 (EMBL:AE004267) (229 aa) fasta scores: E(): 0%2C 67.0%25 id in 224 aa;gbkey=CDS;gene=cmk;inference=similar to sequence:INSDC:AE004267;product=cytidylate kinase;protein_id=CAL20043.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1571524	1571997	.	+	.	ID=id3292;Note=Pfam match to entry PF02224 Cytidylate_kin%2CCytidylate kinase%2C score 292.10%2C E-value 7e-84;gbkey=misc_feature;gene=cmk;inference=protein motif:PF02224
AL590842.1	EMBL	gene	1572210	1573883	.	+	.	ID=gene1383;Name=rpsA;gbkey=Gene;gene=rpsA;gene_biotype=protein_coding;gene_synonym=ssyF;locus_tag=YPO1392
AL590842.1	EMBL	CDS	1572210	1573883	.	+	0	ID=cds1353;Parent=gene1383;Dbxref=GOA:Q7CHJ6,InterPro:IPR000110,InterPro:IPR003029,InterPro:IPR012340,InterPro:IPR022967,UniProtKB/TrEMBL:Q7CHJ6,NCBI_GP:CAL20044.1;Name=CAL20044.1;Note=Similar to Escherichia coli 30S ribosomal protein S1 RpsA SW:RS1_ECOLI (P02349) (557 aa) fasta scores: E(): 0%2C95.0%25 id in 558 aa%2C and to Vibrio cholerae ribosomal protein S1 VC1915 TR:Q9KQT3 (EMBL:AE004267) (556 aa) fasta scores: E(): 0%2C 83.5%25 id in 557 aa;gbkey=CDS;gene=rpsA;inference=similar to sequence:INSDC:AE004267;product=30S ribosomal protein S1;protein_id=CAL20044.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1572258	1572470	.	+	.	ID=id3293;Note=Pfam match to entry PF00575 S1%2C S1 RNA binding domain%2C score 47.00%2C E-value 2.4e-11;gbkey=misc_feature;gene=rpsA;inference=protein motif:PF00575
AL590842.1	EMBL	sequence_feature	1572510	1572722	.	+	.	ID=id3294;Note=Pfam match to entry PF00575 S1%2C S1 RNA binding domain%2C score 68.50%2C E-value 2.7e-17;gbkey=misc_feature;gene=rpsA;inference=protein motif:PF00575
AL590842.1	EMBL	sequence_feature	1572771	1572989	.	+	.	ID=id3295;Note=Pfam match to entry PF00575 S1%2C S1 RNA binding domain%2C score 114.80%2C E-value 1.6e-30;gbkey=misc_feature;gene=rpsA;inference=protein motif:PF00575
AL590842.1	EMBL	sequence_feature	1573026	1573250	.	+	.	ID=id3296;Note=Pfam match to entry PF00575 S1%2C S1 RNA binding domain%2C score 105.20%2C E-value 1.3e-27;gbkey=misc_feature;gene=rpsA;inference=protein motif:PF00575
AL590842.1	EMBL	sequence_feature	1573287	1573511	.	+	.	ID=id3297;Note=Pfam match to entry PF00575 S1%2C S1 RNA binding domain%2C score 92.60%2C E-value 6.2e-24;gbkey=misc_feature;gene=rpsA;inference=protein motif:PF00575
AL590842.1	EMBL	sequence_feature	1573548	1573769	.	+	.	ID=id3298;Note=Pfam match to entry PF00575 S1%2C S1 RNA binding domain%2C score 75.30%2C E-value 3.5e-19;gbkey=misc_feature;gene=rpsA;inference=protein motif:PF00575
AL590842.1	EMBL	gene	1573944	1574228	.	+	.	ID=gene1384;Name=himD;gbkey=Gene;gene=himD;gene_biotype=protein_coding;gene_synonym=hip,ihfB;locus_tag=YPO1393
AL590842.1	EMBL	CDS	1573944	1574228	.	+	0	ID=cds1354;Parent=gene1384;Dbxref=GOA:Q8ZGB1,InterPro:IPR000119,InterPro:IPR005685,InterPro:IPR010992,InterPro:IPR020816,NCBI_GP:CAL20045.1;Name=CAL20045.1;Note=Similar to Serratia marcescens integration host factor beta-subunit IhfB SW:IHFB_SERMA (P23303) (94 aa) fasta scores: E(): 0%2C 95.7%25 id in 94 aa%2C and to Escherichia coli integration host factor beta-subunit IhfB SW:IHFB_ECOLI (P08756) (94 aa) fasta scores: E(): 0%2C 93.6%25 id in 94 aa;gbkey=CDS;gene=himD;product=integration host factor beta-subunit;protein_id=CAL20045.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1573944	1574216	.	+	.	ID=id3299;Note=Pfam match to entry PF00216 Bac_DNA_binding%2CBacterial DNA-binding protein%2C score 170.90%2C E-value 4.1e-48;gbkey=misc_feature;gene=himD;inference=protein motif:PF00216
AL590842.1	EMBL	sequence_feature	1574082	1574141	.	+	.	ID=id3300;Note=PS00045 Bacterial histone-like DNA-binding proteins signature.;gbkey=misc_feature;gene=himD;inference=protein motif:ProSite:PS00045
AL590842.1	EMBL	gene	1574775	1577066	.	+	.	ID=gene1385;Name=YPO1394;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1394
AL590842.1	EMBL	CDS	1574775	1577066	.	+	0	ID=cds1355;Parent=gene1385;Dbxref=GOA:Q7CHJ7,InterPro:IPR001279,InterPro:IPR004477,InterPro:IPR004797,InterPro:IPR025405,UniProtKB/TrEMBL:Q7CHJ7,NCBI_GP:CAL20046.1;Name=CAL20046.1;Note=Similar to Neisseria gonorrhoeae competence protein ComA SW:COMA_NEIGO (P51973) (691 aa) fasta scores: E(): 1.8e-27%2C 28.9%25 id in 714 aa%2C and to Escherichia coli hypothetical protein YcaI SW:YCAI_ECOLI (P37443) (780 aa) fasta scores: E(): 0%2C 41.9%25 id in 756 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL20046.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1574811	1574879	.	+	.	ID=id3301;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1574922	1574975	.	+	.	ID=id3302;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1575468	1575536	.	+	.	ID=id3303;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1575564	1575632	.	+	.	ID=id3304;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1575651	1575719	.	+	.	ID=id3305;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1575762	1575830	.	+	.	ID=id3306;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1575849	1575917	.	+	.	ID=id3307;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1575975	1576043	.	+	.	ID=id3308;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1576062	1576115	.	+	.	ID=id3309;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1576128	1576196	.	+	.	ID=id3310;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1576302	1576868	.	+	.	ID=id3311;Note=Pfam match to entry PF00753 lactamase_B%2CMetallo-beta-lactamase superfamily%2C score 52.00%2C E-value 1.3e-11;gbkey=misc_feature;inference=protein motif:PF00753
AL590842.1	EMBL	gene	1577102	1578850	.	+	.	ID=gene1386;Name=msbA;gbkey=Gene;gene=msbA;gene_biotype=protein_coding;locus_tag=YPO1395
AL590842.1	EMBL	CDS	1577102	1578850	.	+	0	ID=cds1356;Parent=gene1386;Dbxref=GOA:Q8ZGA9,InterPro:IPR001140,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR011527,InterPro:IPR011917,InterPro:IPR017871,InterPro:IPR027417,NCBI_GP:CAL20047.1;Name=CAL20047.1;Note=Similar to Escherichia coli probable transport ATP-binding protein MsbA SW:MSBA_ECOLI (P27299) (582 aa) fasta scores: E(): 0%2C 85.2%25 id in 582 aa%2C and to Vibrio cholerae transport ATP-binding protein MsbA TR:Q9KQW9 (EMBL:AE004263) (582 aa) fasta scores: E(): 0%2C 69.0%25 id in 577 aa;gbkey=CDS;gene=msbA;inference=similar to sequence:INSDC:AE004263;product=probable transport ATP-binding protein;protein_id=CAL20047.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1577159	1577218	.	+	.	ID=id3312;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=msbA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1577168	1577995	.	+	.	ID=id3313;Note=Pfam match to entry PF00664 ABC_membrane%2C ABC transporter transmembrane region.%2C score 229.90%2C E-value 3.7e-65;gbkey=misc_feature;gene=msbA;inference=protein motif:PF00664
AL590842.1	EMBL	sequence_feature	1577312	1577380	.	+	.	ID=id3314;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=msbA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1577510	1577578	.	+	.	ID=id3315;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=msbA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1577591	1577659	.	+	.	ID=id3316;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=msbA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1577831	1577899	.	+	.	ID=id3317;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=msbA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1577927	1577995	.	+	.	ID=id3318;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=msbA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1578206	1578763	.	+	.	ID=id3319;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 237.20%2C E-value 2.3e-67;gbkey=misc_feature;gene=msbA;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1578227	1578250	.	+	.	ID=id3320;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=msbA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1578542	1578586	.	+	.	ID=id3321;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=msbA;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	1578847	1579833	.	+	.	ID=gene1387;Name=lpxK;gbkey=Gene;gene=lpxK;gene_biotype=protein_coding;locus_tag=YPO1396
AL590842.1	EMBL	CDS	1578847	1579833	.	+	0	ID=cds1357;Parent=gene1387;Dbxref=GOA:Q8ZGA8,InterPro:IPR003758,InterPro:IPR027417,NCBI_GP:CAL20048.1;Name=CAL20048.1;Note=Similar to Escherichia coli tetraacyldisaccharide 4'-kinase LpxK SW:LPXK_ECOLI (P27300) (328 aa) fasta scores: E(): 0%2C 70.2%25 id in 325 aa%2C and to Vibrio cholerae tetraacyldisaccharide 4`-kinase VC1877 TR:Q9KQX0 (EMBL:AE004263) (336 aa) fasta scores: E(): 0%2C 54.2%25 id in 325 aa;gbkey=CDS;gene=lpxK;inference=similar to sequence:INSDC:AE004263;product=tetraacyldisaccharide 4'-kinase;protein_id=CAL20048.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1578880	1578948	.	+	.	ID=id3322;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=lpxK;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1579841	1581277	.	-	.	ID=gene1388;Name=YPO1397;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1397
AL590842.1	EMBL	CDS	1579841	1581277	.	-	0	ID=cds1358;Parent=gene1388;Dbxref=InterPro:IPR009770,UniProtKB/TrEMBL:Q7CHJ9,NCBI_GP:CAL20049.1;Name=CAL20049.1;Note=Similar to Escherichia coli hypothetical protein YdcJ TR:P76097 (EMBL:AE000239) (447 aa) fasta scores: E(): 0%2C 54.3%25 id in 464 aa%2C and to Mycobacterium tuberculosis hypothetical protein rv3292 RV3292 TR:P96897 (EMBL:Z92771) (415 aa) fasta scores: E(): 0%2C 34.3%25 id in 472 aa. The CDS contains extra internal amino acid residues%2C relative to the Mycobacterium tuberculosis protein%2C in the degenerate repeat (5x IQE) region;gbkey=CDS;inference=similar to sequence:INSDC:Z92771;product=conserved hypothetical protein;protein_id=CAL20049.1;transl_table=11
AL590842.1	EMBL	repeat_region	1580111	1580155	.	-	.	ID=id3323;Note=5x degenerate repeat: IQE;gbkey=repeat_region
AL590842.1	EMBL	gene	1581996	1582205	.	+	.	ID=gene1389;Name=cspB;gbkey=Gene;gene=cspB;gene_biotype=protein_coding;locus_tag=YPO1398
AL590842.1	EMBL	CDS	1581996	1582205	.	+	0	ID=cds1359;Parent=gene1389;Dbxref=GOA:Q0WH17,InterPro:IPR002059,InterPro:IPR011129,InterPro:IPR012156,InterPro:IPR012340,UniProtKB/TrEMBL:Q0WH17,NCBI_GP:CAL20050.1;Name=CAL20050.1;Note=Similar to Yersinia enterocolitica cold shock-like protein CspB SW:CSPB_YEREN (O85593) (70 aa) fasta scores: E(): 3e-12%2C 51.4%25 id in 70 aa%2C and to Escherichia coli cold shock-like protein CspE SW:CSPE_ECOLI (P36997) (68 aa) fasta scores: E(): 4.2e-12%2C 54.7%25 id in 64 aa;gbkey=CDS;gene=cspB;product=cold shock-like protein;protein_id=CAL20050.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1582002	1582202	.	+	.	ID=id3324;Note=Pfam match to entry PF00313 CSD%2C 'Cold-shock' DNA-binding domain%2C score 72.20%2C E-value 7e-19;gbkey=misc_feature;gene=cspB;inference=protein motif:PF00313
AL590842.1	EMBL	gene	1582753	1582935	.	+	.	ID=gene1390;Name=YPO1399;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1399
AL590842.1	EMBL	CDS	1582753	1582935	.	+	0	ID=cds1360;Parent=gene1390;Dbxref=InterPro:IPR005651,NCBI_GP:CAL20051.1;Name=CAL20051.1;Note=Similar to Escherichia coli protein YcaR SW:YCAR_ECOLI (P75844) (60 aa) fasta scores: E(): 1.7e-19%2C71.7%25 id in 60 aa%2C and to Vibrio cholerae hypothetical protein VC1876 TR:Q9KQX1 (EMBL:AE004263) (59 aa) fasta scores: E(): 1.5e-17%2C 70.2%25 id in 57 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004263;product=conserved hypothetical protein;protein_id=CAL20051.1;transl_table=11
AL590842.1	EMBL	gene	1582932	1583684	.	+	.	ID=gene1391;Name=kdsB;gbkey=Gene;gene=kdsB;gene_biotype=protein_coding;locus_tag=YPO1400
AL590842.1	EMBL	CDS	1582932	1583684	.	+	0	ID=cds1361;Parent=gene1391;Dbxref=GOA:Q8ZGA4,InterPro:IPR003329,InterPro:IPR004528,InterPro:IPR029044,PDB:3JTJ,NCBI_GP:CAL20052.1;Name=CAL20052.1;Note=Similar to Escherichia coli 3-deoxy-manno-octulosonate cytidylyltransferase KdsB SW:KDSB_ECOLI (P04951) (247 aa) fasta scores: E(): 0%2C 77.6%25 id in 246 aa%2C and to Vibrio cholerae 3-deoxy-manno-octulosonate cytidylyltransferase VC1875 TR:Q9KQX2 (EMBL:AE004263) (252 aa) fasta scores: E(): 0%2C67.6%25 id in 247 aa;gbkey=CDS;gene=kdsB;inference=similar to sequence:INSDC:AE004263;product=putative 3-deoxy-manno-octulosonate cytidylyltransferase;protein_id=CAL20052.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1582941	1583594	.	+	.	ID=id3325;Note=Pfam match to entry PF02348 Cytidylyl_trans%2C %2C score 315.80%2C E-value 5e-91;gbkey=misc_feature;gene=kdsB;inference=protein motif:PF02348
AL590842.1	EMBL	gene	1584047	1584940	.	+	.	ID=gene1392;Name=YPO1401;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1401
AL590842.1	EMBL	CDS	1584047	1584940	.	+	0	ID=cds1362;Parent=gene1392;Dbxref=GOA:Q0WH14,InterPro:IPR011009,InterPro:IPR016477,UniProtKB/TrEMBL:Q0WH14,NCBI_GP:CAL20053.1;Name=CAL20053.1;Note=C-terminal region is similar to the C-terminus of Homo sapiens fructosamine-3-kinase FN3K TR:CAC16393 (EMBL:AJ404615) (309 aa) fasta scores: E(): 0.038%2C 22.0%25 id in 205 aa. Full length CDS is similar to Escherichia coli hypothetical protein YcbJ TR:P75845 (EMBL:AE000194) (297 aa) fasta scores: E(): 0%2C 54.5%25 id in 297 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ404615;product=conserved hypothetical protein;protein_id=CAL20053.1;transl_table=11
AL590842.1	EMBL	gene	1585713	1586498	.	+	.	ID=gene1393;Name=smtA;gbkey=Gene;gene=smtA;gene_biotype=protein_coding;locus_tag=YPO1402
AL590842.1	EMBL	CDS	1585713	1586498	.	+	0	ID=cds1363;Parent=gene1393;Dbxref=GOA:Q0WH13,InterPro:IPR025714,InterPro:IPR029063,UniProtKB/TrEMBL:Q0WH13,NCBI_GP:CAL20054.1;Name=CAL20054.1;Note=Some similarity to an internal region of Escherichia coli 3-demethylubiquinone-9 3-methyltransferase UbiG SW:UBIG_ECOLI (P17993) (240 aa) fasta scores: E(): 8.5e-06%2C27.0%25 id in 163 aa. Full length CDS is similar to Escherichia coli possible S-adenosylmethionine-dependent methyltransferase SmtA SW:SMTA_ECOLI (P36566) (261 aa) fasta scores: E(): 0%2C 64.5%25 id in 259 aa;gbkey=CDS;gene=smtA;product=putative methyltransferase;protein_id=CAL20054.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1586235	1586300	.	+	.	ID=id3326;Note=Predicted helix-turn-helix motif with score 1181 (+3.21 SD) at aa 177-198%2C sequence RRQRSLSPQYPLDPPTVYGWLE;gbkey=misc_feature;gene=smtA
AL590842.1	EMBL	sequence_feature	1586307	1586330	.	+	.	ID=id3327;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=smtA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1586495	1587817	.	+	.	ID=gene1394;Name=kicB;gbkey=Gene;gene=kicB;gene_biotype=protein_coding;gene_synonym=mukF;locus_tag=YPO1403
AL590842.1	EMBL	CDS	1586495	1587817	.	+	0	ID=cds1364;Parent=gene1394;Dbxref=GOA:Q8ZGA1,InterPro:IPR005582,InterPro:IPR010916,InterPro:IPR011991,NCBI_GP:CAL20055.1;Name=CAL20055.1;Note=Similar to Escherichia coli killing factor protein%2Ccausing inhibition of protein biosynthesis and killing of cells%2C MukF SW:MUKF_ECOLI (P36567) (440 aa) fasta scores: E(): 0%2C 84.8%25 id in 440 aa%2C and to Haemophilus influenzae MukF protein homolog HI1372 SW:MUKF_HAEIN (P45185) (475 aa) fasta scores: E(): 0%2C 64.6%25 id in 444 aa;gbkey=CDS;gene=kicB;product=putative killing factor protein;protein_id=CAL20055.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1586495	1586719	.	+	.	ID=id3328;Note=PS00430 TonB-dependent receptor proteins signature 1.;gbkey=misc_feature;gene=kicB;inference=protein motif:ProSite:PS00430
AL590842.1	EMBL	gene	1587825	1588526	.	+	.	ID=gene1395;Name=kicA;gbkey=Gene;gene=kicA;gene_biotype=protein_coding;gene_synonym=mukE;locus_tag=YPO1404
AL590842.1	EMBL	CDS	1587825	1588526	.	+	0	ID=cds1365;Parent=gene1395;Dbxref=GOA:Q8D049,InterPro:IPR007385,NCBI_GP:CAL20056.1;Name=CAL20056.1;Note=Similar to Escherichia coli hypothetical protein MukE SW:MUKE_ECOLI (P22524) (225 aa) fasta scores: E(): 0%2C81.8%25 id in 231 aa%2C and to Haemophilus influenzae hypothetical protein HI1373 SW:MUKE_HAEIN (P45186) (243 aa) fasta scores: E(): 0%2C 67.1%25 id in 234 aa;gbkey=CDS;gene=kicA;product=conserved hypothetical protein;protein_id=CAL20056.1;transl_table=11
AL590842.1	EMBL	gene	1588523	1592980	.	+	.	ID=gene1396;Name=mukB;gbkey=Gene;gene=mukB;gene_biotype=protein_coding;locus_tag=YPO1405
AL590842.1	EMBL	CDS	1588523	1592980	.	+	0	ID=cds1366;Parent=gene1396;Dbxref=GOA:Q8ZG99,InterPro:IPR009053,InterPro:IPR012090,InterPro:IPR027417,NCBI_GP:CAL20057.1;Name=CAL20057.1;Note=Similar to Escherichia coli cell division protein MukB SW:MUKB_ECOLI (P22523) (1486 aa) fasta scores: E(): 0%2C81.1%25 id in 1476 aa%2C and to Haemophilus influenzae cell division protein MukB homolog HI1374 SW:MUKB_HAEIN (P45187) (1510 aa) fasta scores: E(): 0%2C 64.6%25 id in 1467 aa. Contains various coiled-coil domains at approx. residues 344..415%2C 564..589%2C 844..868%2C 989..1033%2C 1078..1105;gbkey=CDS;gene=mukB;product=cell division protein;protein_id=CAL20057.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1588622	1588645	.	+	.	ID=id3329;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=mukB;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	repeat_region	1593051	1593762	.	+	.	ID=id3330;Note=Contains a 'A' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	1593196	1593654	.	+	.	ID=gene1397;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO1406
AL590842.1	EMBL	CDS	1593196	1593654	.	+	0	ID=cds1367;Parent=gene1397;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL20058.1;Name=CAL20058.1;Note=Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL20058.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1593250	1593561	.	+	.	ID=id3331;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	1593938	1595794	.	+	.	ID=gene1398;Name=YPO1407;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1407
AL590842.1	EMBL	CDS	1593938	1595794	.	+	0	ID=cds1368;Parent=gene1398;Dbxref=GOA:Q7CHK1,InterPro:IPR002477,InterPro:IPR005490,UniProtKB/TrEMBL:Q7CHK1,NCBI_GP:CAL20059.1;Name=CAL20059.1;Note=C-terminal region is similar to the C-terminus of Haemophilus influenzae hypothetical protein HI1667 SW:YCBB_HAEIN (P44285) (489 aa) fasta scores: E(): 0%2C 53.1%25 id in 243 aa%2C and Vibrio cholerae hypothetical protein VC1268 TR:Q9KSI8 (EMBL:AE004206) (524 aa) fasta scores: E(): 0%2C 32.0%25 id in 543 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004206;product=putative exported protein;protein_id=CAL20059.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1595198	1595218	.	+	.	ID=id3332;Note=PS00092 N-6 Adenine-specific DNA methylases signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00092
AL590842.1	EMBL	gene	1596018	1596566	.	+	.	ID=gene1399;Name=YPO1408;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1408
AL590842.1	EMBL	CDS	1596018	1596566	.	+	0	ID=cds1369;Parent=gene1399;Dbxref=InterPro:IPR009045,InterPro:IPR010275,UniProtKB/TrEMBL:Q7CHK2,NCBI_GP:CAL20060.1;Name=CAL20060.1;Note=Similar to Escherichia coli hypothetical 20.4 kDa protein YcbK SW:YCBK_ECOLI (P75848) (182 aa) fasta scores: E(): 0%2C 81.9%25 id in 182 aa%2C and to Vibrio cholerae hypothetical protein VC1269 TR:Q9KSI7 (EMBL:AE004206) (182 aa) fasta scores: E(): 0%2C 50.8%25 id in 181 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004206;product=putative exported protein;protein_id=CAL20060.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	1596619	1596622	.	+	.	ID=id3333;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	1596627	1597274	.	+	.	ID=gene1400;Name=YPO1409;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1409
AL590842.1	EMBL	CDS	1596627	1597274	.	+	0	ID=cds1370;Parent=gene1400;Dbxref=InterPro:IPR001279,UniProtKB/TrEMBL:Q7CHK3,NCBI_GP:CAL20061.1;Name=CAL20061.1;Note=Similar to Escherichia coli hypothetical protein YcbL SW:YCBL_ECOLI (P75849) (215 aa) fasta scores: E(): 0%2C70.7%25 id in 215 aa%2C and to Vibrio cholerae glyoxalase II family protein VC1270 TR:Q9KSI6 (EMBL:AE004206) (218 aa) fasta scores: E(): 0%2C 51.9%25 id in 212 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004206;product=metallo-beta-lactamase superfamily protein;protein_id=CAL20061.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1596711	1597202	.	+	.	ID=id3334;Note=Pfam match to entry PF00753 lactamase_B%2CMetallo-beta-lactamase superfamily%2C score 109.40%2C E-value 6.8e-29;gbkey=misc_feature;inference=protein motif:PF00753
AL590842.1	EMBL	gene	1597698	1598888	.	-	.	ID=gene1401;Name=aspC;gbkey=Gene;gene=aspC;gene_biotype=protein_coding;locus_tag=YPO1410
AL590842.1	EMBL	CDS	1597698	1598888	.	-	0	ID=cds1371;Parent=gene1401;Dbxref=GOA:Q0WH05,InterPro:IPR000796,InterPro:IPR004838,InterPro:IPR004839,InterPro:IPR015421,InterPro:IPR015424,UniProtKB/TrEMBL:Q0WH05,NCBI_GP:CAL20062.1;Name=CAL20062.1;Note=Similar to Escherichia coli aspartate aminotransferase AspC SW:AAT_ECOLI (P00509) (396 aa) fasta scores: E(): 0%2C 86.1%25 id in 396 aa%2C and to Aeromonas hydrophila aspartate amino-transferase AspC TR:Q9RNA0 (EMBL:AF183931) (396 aa) fasta scores: E(): 0%2C 64.1%25 id in 396 aa;gbkey=CDS;gene=aspC;inference=similar to sequence:INSDC:AF183931;product=aspartate aminotransferase;protein_id=CAL20062.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1597701	1598888	.	-	.	ID=id3335;Note=Pfam match to entry PF00155 aminotran_1%2CAminotransferases class-I%2C score 608.00%2C E-value 5.5e-179;gbkey=misc_feature;gene=aspC;inference=protein motif:PF00155
AL590842.1	EMBL	sequence_feature	1598121	1598162	.	-	.	ID=id3336;Note=PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site.;gbkey=misc_feature;gene=aspC;inference=protein motif:ProSite:PS00105
AL590842.1	EMBL	gene	1599145	1600321	.	-	.	ID=gene1402;Name=ompF;gbkey=Gene;gene=ompF;gene_biotype=protein_coding;locus_tag=YPO1411;partial=true;start_range=.,1599145
AL590842.1	EMBL	mRNA	1599145	1600321	.	-	.	ID=rna35;Parent=gene1402;gbkey=mRNA;gene=ompF;partial=true;start_range=.,1599145
AL590842.1	EMBL	exon	1599145	1600321	.	-	.	ID=id3337;Parent=rna35;gbkey=mRNA;gene=ompF;partial=true;start_range=.,1599145
AL590842.1	EMBL	CDS	1599145	1600227	.	-	0	ID=cds1372;Parent=rna35;Dbxref=GOA:Q0WH04,InterPro:IPR001702,InterPro:IPR001897,InterPro:IPR013793,InterPro:IPR023614,UniProtKB/TrEMBL:Q0WH04,NCBI_GP:CAL20063.1;Name=CAL20063.1;Note=Similar to Klebsiella pneumoniae outer membrane protein C OmpC SW:OMPC_KLEPN (Q48473) (363 aa) fasta scores: E(): 0%2C 62.2%25 id in 370 aa%2C to Escherichia coli outer membrane pore protein E OmpE SW:PHOE_ECOLI (P02932) (351 aa) fasta scores: E(): 0%2C 58.3%25 id in 362 aa and to Yersinia pestis YPO1205 (371 aa) fasta scores: E(): 0%2C62.2%25 identity in 376 aa overlap;gbkey=CDS;gene=ompF;product=Outer membrane porin protein F;protein_id=CAL20063.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1599148	1600146	.	-	.	ID=id3338;Note=Pfam match to entry PF00267 Gram-ve_porins%2C General diffusion Gram-negative porins%2C score 674.10%2C E-value 6.4e-227;gbkey=misc_feature;gene=ompF;inference=protein motif:PF00267
AL590842.1	EMBL	sequence_feature	1599244	1599294	.	-	.	ID=id3339;Note=PS00576 General diffusion Gram-negative porins signature.;gbkey=misc_feature;gene=ompF;inference=protein motif:ProSite:PS00576
AL590842.1	EMBL	five_prime_UTR	1600228	1600321	.	-	.	ID=id3340;Note=acknowledging Delihas N.;gbkey=5'UTR;gene=ompF
AL590842.1	EMBL	gene	1600525	1601925	.	-	.	ID=gene1403;Name=asnS;gbkey=Gene;gene=asnS;gene_biotype=protein_coding;gene_synonym=tss;locus_tag=YPO1412
AL590842.1	EMBL	CDS	1600525	1601925	.	-	0	ID=cds1373;Parent=gene1403;Dbxref=GOA:P58697,InterPro:IPR002312,InterPro:IPR004364,InterPro:IPR004365,InterPro:IPR004522,InterPro:IPR006195,InterPro:IPR012340,InterPro:IPR018150,NCBI_GP:CAL20064.1;Name=CAL20064.1;Note=Similar to Escherichia coli asparaginyl-tRNA synthetase AsnS SW:SYN_ECOLI (P17242) (465 aa) fasta scores: E(): 0%2C 87.3%25 id in 465 aa%2C and to Haemophilus influenzae asparaginyl-tRNA synthetase AsnS SW:SYN_HAEIN (P43829) (477 aa) fasta scores: E(): 0%2C 79.5%25 id in 464 aa;gbkey=CDS;gene=asnS;product=asparaginyl-tRNA synthetase;protein_id=CAL20064.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1600540	1601577	.	-	.	ID=id3341;Note=Pfam match to entry PF00152 tRNA-synt_2%2C tRNA synthetases class II (D%2C K and N)%2C score 590.60%2C E-value 9.6e-174;gbkey=misc_feature;gene=asnS;inference=protein motif:PF00152
AL590842.1	EMBL	sequence_feature	1600594	1600623	.	-	.	ID=id3342;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.;gbkey=misc_feature;gene=asnS;inference=protein motif:ProSite:PS00339
AL590842.1	EMBL	sequence_feature	1601173	1601229	.	-	.	ID=id3343;Note=PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.;gbkey=misc_feature;gene=asnS;inference=protein motif:ProSite:PS00179
AL590842.1	EMBL	sequence_feature	1601626	1601868	.	-	.	ID=id3344;Note=Pfam match to entry PF01336 tRNA_anti%2C tRNA synthetase anti-codon binding domain%2C score 66.50%2C E-value 5.7e-16;gbkey=misc_feature;gene=asnS;inference=protein motif:PF01336
AL590842.1	EMBL	gene	1602424	1603629	.	-	.	ID=gene1404;Name=pncB;gbkey=Gene;gene=pncB;gene_biotype=protein_coding;locus_tag=YPO1413
AL590842.1	EMBL	CDS	1602424	1603629	.	-	0	ID=cds1374;Parent=gene1404;Dbxref=GOA:Q8ZG93,InterPro:IPR002638,InterPro:IPR006406,InterPro:IPR007229,PDB:3OS4,NCBI_GP:CAL20065.1;Name=CAL20065.1;Note=Similar to Escherichia coli nicotinate phosphoribosyltransferase PncB SW:PNCB_ECOLI (P18133) (399 aa) fasta scores: E(): 0%2C 73.5%25 id in 400 aa%2C and to Salmonella typhimurium nicotinate phosphoribosyltransferase PncB SW:PNCB_SALTY (P22253) (399 aa) fasta scores: E(): 0%2C72.5%25 id in 400 aa;gbkey=CDS;gene=pncB;product=putative nicotinate phosphoribosyltransferase;protein_id=CAL20065.1;transl_table=11
AL590842.1	EMBL	gene	1604345	1606960	.	+	.	ID=gene1405;Name=pepN;gbkey=Gene;gene=pepN;gene_biotype=protein_coding;locus_tag=YPO1414
AL590842.1	EMBL	CDS	1604345	1606960	.	+	0	ID=cds1375;Parent=gene1405;Dbxref=GOA:Q7CHK4,InterPro:IPR001930,InterPro:IPR012779,InterPro:IPR014782,InterPro:IPR024601,UniProtKB/TrEMBL:Q7CHK4,NCBI_GP:CAL20066.1;Name=CAL20066.1;Note=Similar to Escherichia coli aminopeptidase N PepN SW:AMPN_ECOLI (P04825) (869 aa) fasta scores: E(): 0%2C 77.2%25 id in 869 aa%2C and to Vibrio cholerae aminopeptidase N VC1494 TR:Q9KRY9 (EMBL:AE004227) (868 aa) fasta scores: E(): 0%2C 65.1%25 id in 871 aa;gbkey=CDS;gene=pepN;inference=similar to sequence:INSDC:AE004227;product=putative aminopeptidase N;protein_id=CAL20066.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1604696	1605496	.	+	.	ID=id3345;Note=Pfam match to entry PF01433 Peptidase_M1%2C Peptidase family M1%2C score 251.30%2C E-value 1.4e-86;gbkey=misc_feature;gene=pepN;inference=protein motif:PF01433
AL590842.1	EMBL	sequence_feature	1605224	1605253	.	+	.	ID=id3346;Note=PS00142 Neutral zinc metallopeptidases%2C zinc-binding region signature.;gbkey=misc_feature;gene=pepN;inference=protein motif:ProSite:PS00142
AL590842.1	EMBL	gene	1607578	1608588	.	+	.	ID=gene1406;Name=pyrD;gbkey=Gene;gene=pyrD;gene_biotype=protein_coding;locus_tag=YPO1415
AL590842.1	EMBL	CDS	1607578	1608588	.	+	0	ID=cds1376;Parent=gene1406;Dbxref=GOA:Q8ZG91,InterPro:IPR001295,InterPro:IPR005719,InterPro:IPR012135,InterPro:IPR013785,NCBI_GP:CAL20067.1;Name=CAL20067.1;Note=Similar to Escherichia coli dihydroorotate dehydrogenase PyrD SW:PYRD_ECOLI (P05021) (336 aa) fasta scores: E(): 0%2C 83.6%25 id in 336 aa%2C and to Salmonella typhimurium dihydroorotate dehydrogenase PyrD SW:PYRD_SALTY (P25468) (336 aa) fasta scores: E(): 0%2C 83.6%25 id in 336 aa;gbkey=CDS;gene=pyrD;product=dihydroorotate dehydrogenase;protein_id=CAL20067.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1607713	1608567	.	+	.	ID=id3347;Note=Pfam match to entry PF01180 DHOdehase%2CDihydroorotate dehydrogenase%2C score 558.60%2C E-value 4.1e-164;gbkey=misc_feature;gene=pyrD;inference=protein motif:PF01180
AL590842.1	EMBL	sequence_feature	1607815	1607874	.	+	.	ID=id3348;Note=PS00911 Dihydroorotate dehydrogenase signature 1.;gbkey=misc_feature;gene=pyrD;inference=protein motif:ProSite:PS00911
AL590842.1	EMBL	sequence_feature	1608451	1608513	.	+	.	ID=id3349;Note=PS00912 Dihydroorotate dehydrogenase signature 2.;gbkey=misc_feature;gene=pyrD;inference=protein motif:ProSite:PS00912
AL590842.1	EMBL	gene	1608771	1609322	.	+	.	ID=gene1407;Name=YPO1416;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1416
AL590842.1	EMBL	CDS	1608771	1609322	.	+	0	ID=cds1377;Parent=gene1407;Dbxref=GOA:Q7CHK5,InterPro:IPR009809,NCBI_GP:CAL20068.1;Name=CAL20068.1;Note=Similar to Escherichia coli hypothetical protein YcbW SW:YCBW_ECOLI (P75862) (192 aa) fasta scores: E(): 0%2C66.5%25 id in 167 aa%2C and to Vibrio cholerae hypothetical protein VC1490 TR:Q9KRZ3 (EMBL:AE004227) (180 aa) fasta scores: E(): 1.1e-17%2C 38.1%25 id in 168 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004227;product=conserved hypothetical protein;protein_id=CAL20068.1;transl_table=11
AL590842.1	EMBL	gene	1609348	1610460	.	-	.	ID=gene1408;Name=YPO1417;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1417
AL590842.1	EMBL	CDS	1609348	1610460	.	-	0	ID=cds1378;Parent=gene1408;Dbxref=GOA:Q7CHK6,InterPro:IPR001041,InterPro:IPR005302,InterPro:IPR005303,InterPro:IPR006058,InterPro:IPR011037,InterPro:IPR012675,UniProtKB/TrEMBL:Q7CHK6,NCBI_GP:CAL20069.1;Name=CAL20069.1;Note=Similar to Escherichia coli hypothetical protein RfbI TR:P75863 (EMBL:AE000196) (369 aa) fasta scores: E(): 3.1e-107%2C 69.126%25 id in 366 aa%2C and to Vibrio cholerae hypothetical protein VCA0924 TR:Q9KL25 (EMBL:AE004419) (662 aa) fasta scores: E(): 1.2e-44%2C 46.642%25 id in 268 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004419;product=putative iron-sulfur binding protein;protein_id=CAL20069.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1609372	1609596	.	-	.	ID=id3350;Note=Pfam match to entry PF00111 fer2%2C 2Fe-2S iron-sulfur cluster binding domains%2C score 49.10%2C E-value 9.6e-11;gbkey=misc_feature;inference=protein motif:PF00111
AL590842.1	EMBL	sequence_feature	1609468	1609494	.	-	.	ID=id3351;Note=PS00197 2Fe-2S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00197
AL590842.1	EMBL	sequence_feature	1610344	1610373	.	-	.	ID=id3352;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00339
AL590842.1	EMBL	gene	1610560	1612680	.	+	.	ID=gene1409;Name=YPO1418;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1418
AL590842.1	EMBL	CDS	1610560	1612680	.	+	0	ID=cds1379;Parent=gene1409;Dbxref=GOA:Q7CHK7,InterPro:IPR000241,InterPro:IPR002052,InterPro:IPR004114,InterPro:IPR017244,InterPro:IPR019614,InterPro:IPR029063,NCBI_GP:CAL20070.1;Name=CAL20070.1;Note=Similar to Escherichia coli hypothetical protein YcbY SW:YCBY_ECOLI (P75864) (702 aa) fasta scores: E(): 0%2C75.4%25 id in 700 aa%2C and to Vibrio cholerae hypothetical protein VC1488 TR:Q9KRZ5 (EMBL:AE004226) (708 aa) fasta scores: E(): 0%2C 56.2%25 id in 707 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004226;product=conserved hypothetical protein;protein_id=CAL20070.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1610563	1611696	.	+	.	ID=id3353;Note=Pfam match to entry PF01170 UPF0020%2C Uncharacterized protein family UPF0020%2C score 677.30%2C E-value 7.5e-200;gbkey=misc_feature;inference=protein motif:PF01170
AL590842.1	EMBL	sequence_feature	1611142	1611177	.	+	.	ID=id3354;Note=PS01261 Uncharacterized protein family UPF0020 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01261
AL590842.1	EMBL	sequence_feature	1611475	1611495	.	+	.	ID=id3355;Note=PS00092 N-6 Adenine-specific DNA methylases signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00092
AL590842.1	EMBL	gene	1612686	1614599	.	+	.	ID=gene1410;Name=uup;gbkey=Gene;gene=uup;gene_biotype=protein_coding;locus_tag=YPO1419
AL590842.1	EMBL	CDS	1612686	1614599	.	+	0	ID=cds1380;Parent=gene1410;Dbxref=GOA:Q74VU9,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q74VU9,NCBI_GP:CAL20071.1;Name=CAL20071.1;Note=Similar to Escherichia coli ABC transporter ATP-binding protein Uup SW:UUP_ECOLI (P43672) (635 aa) fasta scores: E(): 0%2C 77.4%25 id in 637 aa%2C and to Haemophilus influenzae ABC transporter ATP-binding protein Uup-1 SW:UUP1_HAEIN (Q57242) (647 aa) fasta scores: E(): 0%2C66.3%25 id in 641 aa;gbkey=CDS;gene=uup;product=ABC transporter ATP-binding protein;protein_id=CAL20071.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1612770	1613372	.	+	.	ID=id3356;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 156.00%2C E-value 6.3e-43;gbkey=misc_feature;gene=uup;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1612791	1612814	.	+	.	ID=id3357;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=uup;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1613154	1613198	.	+	.	ID=id3358;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=uup;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	1613718	1614224	.	+	.	ID=id3359;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 127.20%2C E-value 3e-34;gbkey=misc_feature;gene=uup;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1613739	1613762	.	+	.	ID=id3360;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=uup;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1614006	1614050	.	+	.	ID=id3361;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=uup;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	1614728	1616014	.	+	.	ID=gene1411;Name=pqiA;gbkey=Gene;gene=pqiA;gene_biotype=protein_coding;locus_tag=YPO1420
AL590842.1	EMBL	CDS	1614728	1616014	.	+	0	ID=cds1381;Parent=gene1411;Dbxref=InterPro:IPR005219,InterPro:IPR007498,UniProtKB/TrEMBL:Q7CHK8,NCBI_GP:CAL20072.1;Name=CAL20072.1;Note=Similar to Escherichia coli paraquat-inducible protein A PqiA SW:PQIA_ECOLI (P43670) (417 aa) fasta scores: E(): 0%2C 70.4%25 id in 406 aa%2C and to Vibrio cholerae paraquat-inducible protein A VC1753 TR:Q9KR89 (EMBL:AE004252) (434 aa) fasta scores: E(): 0%2C 39.1%25 id in 419 aa;gbkey=CDS;gene=pqiA;inference=similar to sequence:INSDC:AE004252;product=putative paraquat-inducible protein A;protein_id=CAL20072.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1614899	1614958	.	+	.	ID=id3362;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=pqiA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1615040	1615108	.	+	.	ID=id3363;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=pqiA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1615157	1615225	.	+	.	ID=id3364;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=pqiA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1615235	1615294	.	+	.	ID=id3365;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=pqiA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1615508	1615576	.	+	.	ID=id3366;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=pqiA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1615655	1615723	.	+	.	ID=id3367;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=pqiA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1615793	1615861	.	+	.	ID=id3368;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=pqiA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1615874	1615942	.	+	.	ID=id3369;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=pqiA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1616028	1617653	.	+	.	ID=gene1412;Name=pqiB;gbkey=Gene;gene=pqiB;gene_biotype=protein_coding;locus_tag=YPO1421
AL590842.1	EMBL	CDS	1616028	1617653	.	+	0	ID=cds1382;Parent=gene1412;Dbxref=InterPro:IPR003399,UniProtKB/TrEMBL:Q0WGZ4,NCBI_GP:CAL20073.1;Name=CAL20073.1;Note=Similar to Escherichia coli paraquat-inducible protein B PqiB SW:PQIB_ECOLI (P43671) (546 aa) fasta scores: E(): 0%2C 69.4%25 id in 540 aa%2C and to Vibrio cholerae paraquat-inducible protein B VC1754 TR:Q9KR88 (EMBL:AE004252) (547 aa) fasta scores: E(): 0%2C 43.2%25 id in 542 aa;gbkey=CDS;gene=pqiB;inference=similar to sequence:INSDC:AE004252;product=putative paraquat-inducible protein B;protein_id=CAL20073.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1616064	1616123	.	+	.	ID=id3370;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=pqiB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1617650	1618228	.	+	.	ID=gene1413;Name=YPO1422;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1422
AL590842.1	EMBL	CDS	1617650	1618228	.	+	0	ID=cds1383;Parent=gene1413;Dbxref=InterPro:IPR005586,UniProtKB/TrEMBL:Q7CHK9,NCBI_GP:CAL20074.1;Name=CAL20074.1;Note=Similar to Escherichia coli hypothetical protein YmbA SW:YMBA_ECOLI (P75866) (182 aa) fasta scores: E(): 0%2C58.4%25 id in 185 aa%2C and to Vibrio cholerae hypothetical protein VC1755 TR:Q9KR87 (EMBL:AE004252) (192 aa) fasta scores: E(): 1.1e-10%2C 29.6%25 id in 196 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004252;product=putative lipoprotein protein;protein_id=CAL20074.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1617665	1617697	.	+	.	ID=id3371;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	repeat_region	1617725	1617760	.	+	.	ID=id3372;Note=2x degenerate repeat unit: QLPALN;gbkey=repeat_region
AL590842.1	EMBL	gene	1618277	1618417	.	+	.	ID=gene1414;Name=YPO1423;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1423
AL590842.1	EMBL	CDS	1618277	1618417	.	+	0	ID=cds1384;Parent=gene1414;Dbxref=UniProtKB/TrEMBL:Q74VV3,NCBI_GP:CAL20075.1;Name=CAL20075.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20075.1;transl_table=11
AL590842.1	EMBL	gene	1618498	1618665	.	+	.	ID=gene1415;Name=rmf;gbkey=Gene;gene=rmf;gene_biotype=protein_coding;locus_tag=YPO1423a
AL590842.1	EMBL	CDS	1618498	1618665	.	+	0	ID=cds1385;Parent=gene1415;Dbxref=GOA:Q74VV4,InterPro:IPR007040,InterPro:IPR023200,UniProtKB/TrEMBL:Q74VV4,NCBI_GP:CAL20076.1;Name=CAL20076.1;Note=Similar to Escherichia coli ribosome modulation factor Rmf SW:RMF_ECOLI (P22986) (55 aa) fasta scores: E(): 2.5e-17%2C 76.364%25 id in 55 aa%2C and to Vibrio cholerae ribosome modulation factor VC1484 TR:Q9KRZ9 (EMBL:AE004226) (57 aa) fasta scores: E(): 1.7e-13%2C 66.667%25 id in 51 aa;gbkey=CDS;gene=rmf;inference=similar to sequence:INSDC:AE004226;product=putative ribosome modulation factor;protein_id=CAL20076.1;transl_table=11
AL590842.1	EMBL	repeat_region	1618718	1619429	.	+	.	ID=id3373;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	1618863	1619321	.	+	.	ID=gene1416;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO1424
AL590842.1	EMBL	CDS	1618863	1619321	.	+	0	ID=cds1386;Parent=gene1416;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL20077.1;Name=CAL20077.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL20077.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1618917	1619228	.	+	.	ID=id3374;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	pseudogene	1622372	1622671	.	-	.	ID=gene1417;Name=YPO1428;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO1428;part=1/2;pseudo=true
AL590842.1	EMBL	pseudogene	1619438	1620412	.	-	.	ID=gene1417;Name=YPO1428;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO1428;part=2/2;pseudo=true
AL590842.1	EMBL	CDS	1622372	1622671	.	-	0	ID=cds1387;Parent=gene1417;Dbxref=PSEUDO:CAL20078.1;Note=CDS is disrupted by the insertion of an IS100 element after codon 100. The full length CDS is similar to Escherichia coli 3-oxoacyl-[acyl-carrier-protein] synthase II FabF SW:FABF_ECOLI (P39435) (412 aa) fasta scores: E(): 9.5e-62%2C 46.445%25 id in 422 aa%2C and to Rhizobium meliloti 3-oxoacyl-[acyl-carrier-protein] synthase II TR:AAF24182 (EMBL:AF159244) (421 aa) fasta scores: E(): 5.3e-84%2C51.905%25 id in 420 aa%2C and to Pseudomonas aeruginosa 3-oxoacyl-acyl carrier protein synthase II FabF2 TR:Q9I3X1 (EMBL:AE004567) (422 aa) fasta scores: E(): 3.3e-122%2C71.868%25 id in 423 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF159244;product=putative 3-oxoacyl-[acyl-carrier-protein] synthase II (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	CDS	1619438	1620412	.	-	0	ID=cds1387;Parent=gene1417;Dbxref=PSEUDO:CAL20078.1;Note=CDS is disrupted by the insertion of an IS100 element after codon 100. The full length CDS is similar to Escherichia coli 3-oxoacyl-[acyl-carrier-protein] synthase II FabF SW:FABF_ECOLI (P39435) (412 aa) fasta scores: E(): 9.5e-62%2C 46.445%25 id in 422 aa%2C and to Rhizobium meliloti 3-oxoacyl-[acyl-carrier-protein] synthase II TR:AAF24182 (EMBL:AF159244) (421 aa) fasta scores: E(): 5.3e-84%2C51.905%25 id in 420 aa%2C and to Pseudomonas aeruginosa 3-oxoacyl-acyl carrier protein synthase II FabF2 TR:Q9I3X1 (EMBL:AE004567) (422 aa) fasta scores: E(): 3.3e-122%2C71.868%25 id in 423 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF159244;product=putative 3-oxoacyl-[acyl-carrier-protein] synthase II (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	1619828	1619908	.	-	.	ID=id3375;Note=PS00107 Protein kinases ATP-binding region signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00107
AL590842.1	EMBL	sequence_feature	1620173	1620223	.	-	.	ID=id3376;Note=PS00606 Beta-ketoacyl synthases active site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00606
AL590842.1	EMBL	sequence_feature	1619444	1620463	.	-	.	ID=id3377;Note=Pfam match to entry PF00109 ketoacyl-synt%2CBeta-ketoacyl synthase%2C score 283.80%2C E-value 2.2e-81;gbkey=misc_feature;inference=protein motif:PF00109
AL590842.1	EMBL	repeat_region	1620416	1622369	.	-	.	ID=id3378;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	1620416	1620443	.	+	.	ID=id3379;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1620482	1621264	.	-	.	ID=gene1418;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO1426
AL590842.1	EMBL	CDS	1620482	1621264	.	-	0	ID=cds1388;Parent=gene1418;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL20079.1;Name=CAL20079.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL20079.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1620557	1621096	.	-	.	ID=id3380;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	1620914	1620937	.	-	.	ID=id3381;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1621261	1622283	.	-	.	ID=gene1419;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO1427
AL590842.1	EMBL	CDS	1621261	1622283	.	-	0	ID=cds1389;Parent=gene1419;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL20080.1;Name=CAL20080.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL20080.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1621405	1621938	.	-	.	ID=id3382;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	sequence_feature	1622167	1622232	.	-	.	ID=id3383;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	1622176	1622259	.	-	.	ID=id3384;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	INVERTED	1622342	1622369	.	-	.	ID=id3385;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1622917	1623105	.	+	.	ID=gene1420;Name=YPO1429;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1429
AL590842.1	EMBL	CDS	1622917	1623105	.	+	0	ID=cds1390;Parent=gene1420;Dbxref=UniProtKB/TrEMBL:Q74WJ3,NCBI_GP:CAL20081.1;Name=CAL20081.1;Note=Doubtful CDS. No significant database matches;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL20081.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1622929	1622997	.	+	.	ID=id3386;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1623040	1623099	.	+	.	ID=id3387;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1623371	1623889	.	-	.	ID=gene1421;Name=fabA;gbkey=Gene;gene=fabA;gene_biotype=protein_coding;locus_tag=YPO1430
AL590842.1	EMBL	CDS	1623371	1623889	.	-	0	ID=cds1391;Parent=gene1421;Dbxref=GOA:Q8ZG80,InterPro:IPR010083,InterPro:IPR013114,InterPro:IPR029069,NCBI_GP:CAL20082.1;Name=CAL20082.1;Note=Similar to Escherichia coli 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase FabA SW:FABA_ECOLI (P18391) (171 aa) fasta scores: E(): 0%2C 87.1%25 id in 171 aa%2C and to Haemophilus influenzae 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase FabA SW:FABA_HAEIN (P45159) (177 aa) fasta scores: E(): 0%2C 76.6%25 id in 171 aa;gbkey=CDS;gene=fabA;product=3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase;protein_id=CAL20082.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1623419	1623844	.	-	.	ID=id3388;Note=Pfam match to entry PF01377 Thioester_dehyd%2CThioester dehydrase%2C score 231.50%2C E-value 1.3e-65;gbkey=misc_feature;gene=fabA;inference=protein motif:PF01377
AL590842.1	EMBL	gene	1623958	1625730	.	-	.	ID=gene1422;Name=YPO1431;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1431
AL590842.1	EMBL	CDS	1623958	1625730	.	-	0	ID=cds1392;Parent=gene1422;Dbxref=GOA:Q7CHL3,InterPro:IPR008269,InterPro:IPR014721,InterPro:IPR020568,InterPro:IPR027065,UniProtKB/TrEMBL:Q7CHL3,NCBI_GP:CAL20083.1;Name=CAL20083.1;Note=Similar to Vibrio parahaemolyticus ATP-dependent protease Lon SW:LON_VIBPA (P74956) (783 aa) fasta scores: E(): 0.004%2C 33.3%25 id in 117 aa%2C and to Escherichia coli putative Lon protease homologue YcbZ SW:LONH_ECOLI (P75867) (586 aa) fasta scores: E(): 0%2C 57.9%25 id in 584 aa;gbkey=CDS;product=putative Lon protease;protein_id=CAL20083.1;transl_table=11
AL590842.1	EMBL	gene	1625920	1626375	.	+	.	ID=gene1423;Name=YPO1433;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1433
AL590842.1	EMBL	CDS	1625920	1626375	.	+	0	ID=cds1393;Parent=gene1423;Dbxref=GOA:Q8ZG78,InterPro:IPR009390,PDB:3VEA,PDB:3VEB,NCBI_GP:CAL20084.1;Name=CAL20084.1;Note=Similar to Escherichia coli hypothetical protein YcbG SW:YCBG_ECOLI (P45569) (150 aa) fasta scores: E(): 0%2C80.0%25 id in 150 aa%2C and to Vibrio cholerae hypothetical protein VC1481 TR:Q9KS02 (EMBL:AE004226) (169 aa) fasta scores: E(): 3.1e-29%2C 52.4%25 id in 147 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004226;product=conserved hypothetical protein;protein_id=CAL20084.1;transl_table=11
AL590842.1	EMBL	repeat_region	1626436	1627147	.	-	.	ID=id3389;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	1626544	1627002	.	-	.	ID=gene1424;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO1434
AL590842.1	EMBL	CDS	1626544	1627002	.	-	0	ID=cds1394;Parent=gene1424;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL20085.1;Name=CAL20085.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL20085.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1626637	1626948	.	-	.	ID=id3390;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	1627192	1628253	.	-	.	ID=gene1425;Name=con;gbkey=Gene;gene=con;gene_biotype=protein_coding;gene_synonym=ompA,tolG,tut;locus_tag=YPO1435
AL590842.1	EMBL	CDS	1627192	1628253	.	-	0	ID=cds1395;Parent=gene1425;Dbxref=GOA:Q8ZG77,InterPro:IPR000498,InterPro:IPR002368,InterPro:IPR006664,InterPro:IPR006665,InterPro:IPR006690,InterPro:IPR011250,NCBI_GP:CAL20086.1;Name=CAL20086.1;Note=Similar to Escherichia coli outer membrane protein A precursor OmpA SW:OMPA_ECOLI (P02934) (346 aa) fasta scores: E(): 3.1e-103%2C 75.921%25 id in 353 aa%2C and to Salmonella typhimurium outer membrane protein A precursor OmpA SW:OMPA_SALTY (P02936) (350 aa) fasta scores: E(): 1.4e-104%2C 76.771%25 id in 353 aa;gbkey=CDS;gene=con;product=putative outer membrane porin A protein;protein_id=CAL20086.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1627276	1627569	.	-	.	ID=id3391;Note=Pfam match to entry PF00691 OmpA%2C OmpA family%2C score 150.10%2C E-value 3.9e-41;gbkey=misc_feature;gene=con;inference=protein motif:PF00691
AL590842.1	EMBL	sequence_feature	1627651	1628238	.	-	.	ID=id3392;Note=Pfam match to entry PF01389 OmpA_membrane%2C OmpA-like transmembrane domain%2C score 353.00%2C E-value 3.2e-102;gbkey=misc_feature;gene=con;inference=protein motif:PF01389
AL590842.1	EMBL	gene	1628611	1629117	.	-	.	ID=gene1426;Name=sfiA;gbkey=Gene;gene=sfiA;gene_biotype=protein_coding;gene_synonym=sulA;locus_tag=YPO1436
AL590842.1	EMBL	CDS	1628611	1629117	.	-	0	ID=cds1396;Parent=gene1426;Dbxref=GOA:Q7CHL5,InterPro:IPR004596,InterPro:IPR027417,NCBI_GP:CAL20087.1;Name=CAL20087.1;Note=Similar to Escherichia coli cell division inhibitor SulA SW:SULA_ECOLI (P08846) (169 aa) fasta scores: E(): 5.1e-31%2C 60.6%25 id in 142 aa%2C and to Serratia marcescens cell division inhibitor SulA SW:SULA_SERMA (P08845) (168 aa) fasta scores: E(): 0%2C 67.9%25 id in 168 aa;gbkey=CDS;gene=sfiA;product=putative cell division inhibitor;protein_id=CAL20087.1;transl_table=11
AL590842.1	EMBL	gene	1629346	1629981	.	+	.	ID=gene1427;Name=YPO1437;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1437
AL590842.1	EMBL	CDS	1629346	1629981	.	+	0	ID=cds1397;Parent=gene1427;Dbxref=InterPro:IPR007076,InterPro:IPR007077,InterPro:IPR026256,UniProtKB/TrEMBL:Q0WGY0,NCBI_GP:CAL20088.1;Name=CAL20088.1;Note=Similar to Haemophilus influenzae DNA transformation protein TfoX SW:TFOX_HAEIN (P43779) (217 aa) fasta scores: E(): 5.5e-05%2C 27.9%25 id in 183 aa%2C and to Escherichia coli hypothetical protein YccR SW:YCCR_ECOLI (P75869) (209 aa) fasta scores: E(): 4.2e-27%2C 44.6%25 id in 195 aa. TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes in Haemophilus influenzae;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL20088.1;transl_table=11
AL590842.1	EMBL	gene	1630083	1632221	.	-	.	ID=gene1428;Name=YPO1438;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1438
AL590842.1	EMBL	CDS	1630083	1632221	.	-	0	ID=cds1398;Parent=gene1428;Dbxref=InterPro:IPR010019,InterPro:IPR010020,UniProtKB/TrEMBL:Q7CHL6,NCBI_GP:CAL20089.1;Name=CAL20089.1;Note=Similar to Escherichia coli hypothetical protein YccS SW:YCCS_ECOLI (P75870) (720 aa) fasta scores: E(): 0%2C69.7%25 id in 710 aa%2C and to Vibrio cholerae hypothetical protein VCA0718 TR:Q9KLM5 (EMBL:AE004401) (725 aa) fasta scores: E(): 0%2C 45.7%25 id in 715 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004401;product=putative membrane protein;protein_id=CAL20089.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1630620	1630676	.	-	.	ID=id3393;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1630698	1630763	.	-	.	ID=id3394;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1630836	1630901	.	-	.	ID=id3395;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1630911	1630988	.	-	.	ID=id3396;Note=PS00217 Sugar transport proteins signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00217
AL590842.1	EMBL	sequence_feature	1631727	1631792	.	-	.	ID=id3397;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1631805	1631870	.	-	.	ID=id3398;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1631892	1631948	.	-	.	ID=id3399;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1631961	1632017	.	-	.	ID=id3400;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1632111	1632176	.	-	.	ID=id3401;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1632251	1632697	.	-	.	ID=gene1429;Name=YPO1439;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1439
AL590842.1	EMBL	CDS	1632251	1632697	.	-	0	ID=cds1399;Parent=gene1429;Dbxref=InterPro:IPR005185,UniProtKB/TrEMBL:Q7CHL7,NCBI_GP:CAL20090.1;Name=CAL20090.1;Note=Similar to Escherichia coli hypothetical protein YccF SW:YCCF_ECOLI (P37065) (148 aa) fasta scores: E(): 0%2C78.1%25 id in 146 aa%2C and to Vibrio cholerae hypothetical protein VCA1051 TR:Q9KKQ1 (EMBL:AE004430) (143 aa) fasta scores: E(): 1.5e-18%2C 39.6%25 id in 139 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004430;product=putative membrane protein;protein_id=CAL20090.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1632320	1632385	.	-	.	ID=id3402;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1632422	1632487	.	-	.	ID=id3403;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1632611	1632676	.	-	.	ID=id3404;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1632891	1634876	.	+	.	ID=gene1430;Name=YPO1440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1440
AL590842.1	EMBL	CDS	1632891	1634876	.	+	0	ID=cds1400;Parent=gene1430;Dbxref=GOA:Q0WGX7,InterPro:IPR000212,InterPro:IPR014016,InterPro:IPR014017,InterPro:IPR022161,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WGX7,NCBI_GP:CAL20091.1;Name=CAL20091.1;Note=Similar to Escherichia coli helicase IV HelD SW:HELD_ECOLI (P15038) (684 aa) fasta scores: E(): 0%2C 66.7%25 id in 684 aa%2C and to Vibrio cholerae helicase IV VCA0717 TR:Q9KLM6 (EMBL:AE004401) (699 aa) fasta scores: E(): 0%2C37.2%25 id in 682 aa. CDS contains an internal deletion or deletions%2C around codon 320%2C relative to the E. coli and V. cholerae proteins;gbkey=CDS;inference=similar to sequence:INSDC:AE004401;product=putative helicase IV;protein_id=CAL20091.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1633479	1633745	.	+	.	ID=id3405;Note=Pfam match to entry PF00580 UvrD-helicase%2C UvrD/REP helicase%2C score 82.80%2C E-value 6.8e-22;gbkey=misc_feature;inference=protein motif:PF00580
AL590842.1	EMBL	sequence_feature	1633536	1633559	.	+	.	ID=id3406;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1634022	1634465	.	+	.	ID=id3407;Note=Pfam match to entry PF00580 UvrD-helicase%2C UvrD/REP helicase%2C score 62.90%2C E-value 1.9e-16;gbkey=misc_feature;inference=protein motif:PF00580
AL590842.1	EMBL	gene	1634937	1635401	.	-	.	ID=gene1431;Name=mgsA;gbkey=Gene;gene=mgsA;gene_biotype=protein_coding;locus_tag=YPO1441
AL590842.1	EMBL	CDS	1634937	1635401	.	-	0	ID=cds1401;Parent=gene1431;Dbxref=GOA:Q8ZG71,InterPro:IPR004363,InterPro:IPR011607,InterPro:IPR018148,NCBI_GP:CAL20092.1;Name=CAL20092.1;Note=Similar to Escherichia coli methylglyoxal synthase MgsA SW:MGSA_ECOLI (P37066) (152 aa) fasta scores: E(): 0%2C73.5%25 id in 151 aa%2C and to Vibrio cholerae methylglyoxal synthase VCA0711 TR:Q9KLN2 (EMBL:AE004400) (151 aa) fasta scores: E(): 0%2C 66.0%25 id in 150 aa;gbkey=CDS;gene=mgsA;inference=similar to sequence:INSDC:AE004400;product=methylglyoxal synthase;protein_id=CAL20092.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1635048	1635359	.	-	.	ID=id3408;Note=Pfam match to entry PF02142 MGS%2C Methylglyoxal synthase%2C score 100.30%2C E-value 3.8e-26;gbkey=misc_feature;gene=mgsA;inference=protein motif:PF02142
AL590842.1	EMBL	gene	1635580	1636260	.	-	.	ID=gene1432;Name=YPO1442;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1442
AL590842.1	EMBL	CDS	1635580	1636260	.	-	0	ID=cds1402;Parent=gene1432;Dbxref=InterPro:IPR018635,NCBI_GP:CAL20093.1;Name=CAL20093.1;Note=Similar to Escherichia coli hypothetical protein YccT SW:YCCT_ECOLI (P75873) (220 aa) fasta scores: E(): 3e-24%2C 36.7%25 id in 226 aa%2C and to Haemophilus influenzae hypothetical protein HI1681 SW:YG81_HAEIN (P44290) (221 aa) fasta scores: E(): 1.3e-17%2C 33.3%25 id in 225 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL20093.1;transl_table=11
AL590842.1	EMBL	gene	1636576	1636992	.	+	.	ID=gene1433;Name=YPO1443;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1443
AL590842.1	EMBL	CDS	1636576	1636992	.	+	0	ID=cds1403;Parent=gene1433;Dbxref=GOA:Q7CHL9,InterPro:IPR003781,InterPro:IPR016040,UniProtKB/TrEMBL:Q7CHL9,NCBI_GP:CAL20094.1;Name=CAL20094.1;Note=Similar to Escherichia coli hypothetical protein B0965 TR:P75874 (EMBL:AE000198) (164 aa) fasta scores: E(): 0%2C 70.8%25 id in 137 aa%2C and to Pyrococcus horikoshii hypothetical protein PH1109 TR:O58836 (EMBL:AP000005) (144 aa) fasta scores: E(): 4.5e-17%2C 44.5%25 id in 137 aa. CDS appears to be truncated at the N-terminus in comparison to E. coli protein;gbkey=CDS;inference=similar to sequence:INSDC:AP000005;product=conserved hypothetical protein;protein_id=CAL20094.1;transl_table=11
AL590842.1	EMBL	gene	1637101	1637442	.	-	.	ID=gene1434;Name=YPO1444;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1444
AL590842.1	EMBL	CDS	1637101	1637442	.	-	0	ID=cds1404;Parent=gene1434;Dbxref=GOA:Q7CHM0,InterPro:IPR011722,InterPro:IPR022866,NCBI_GP:CAL20095.1;Name=CAL20095.1;Note=Similar to Escherichia coli hypothetical protein YccV SW:YCCV_ECOLI (P75875) (122 aa) fasta scores: E(): 0%2C76.1%25 id in 113 aa%2C and to the N-terminal region of Mycobacterium tuberculosis hypothetical protein RV1155 TR:O06553 (EMBL:Z95584) (147 aa) fasta scores: E(): 9.7%2C24.3%25 id in 103 aa. CDS appears to be truncated at the N-terminus in comparison to E. coli protein;gbkey=CDS;inference=similar to sequence:INSDC:Z95584;product=conserved hypothetical protein;protein_id=CAL20095.1;transl_table=11
AL590842.1	EMBL	gene	1637479	1638669	.	-	.	ID=gene1435;Name=YPO1445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1445
AL590842.1	EMBL	CDS	1637479	1638669	.	-	0	ID=cds1405;Parent=gene1435;Dbxref=GOA:Q7CHM1,InterPro:IPR002478,InterPro:IPR015947,InterPro:IPR019614,InterPro:IPR023542,InterPro:IPR029063,NCBI_GP:CAL20096.1;Name=CAL20096.1;Note=Similar to Escherichia coli hypothetical protein YccW TR:Q9R7Q2 (EMBL:AE000198) (396 aa) fasta scores: E(): 0%2C 80.6%25 id in 396 aa%2C and to Vibrio cholerae hypothetical protein VC1354 TR:Q9KSA5 (EMBL:AE004215) (418 aa) fasta scores: E(): 0%2C 62.3%25 id in 398 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004215;product=conserved hypothetical protein;protein_id=CAL20096.1;transl_table=11
AL590842.1	EMBL	gene	1638763	1639041	.	+	.	ID=gene1436;Name=YPO1446;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1446
AL590842.1	EMBL	CDS	1638763	1639041	.	+	0	ID=cds1406;Parent=gene1436;Dbxref=GOA:Q0WGX1,InterPro:IPR001792,InterPro:IPR017968,InterPro:IPR020456,InterPro:IPR028627,UniProtKB/TrEMBL:Q0WGX1,NCBI_GP:CAL20097.1;Name=CAL20097.1;Note=Similar to Cavia porcellus skeletal muscle acylphosphatase AcyP SW:ACYM_CAVPO (P35744) (98 aa) fasta scores: E(): 1.2e-05%2C 34.9%25 id in 86 aa%2C and to Escherichia coli putative acylphosphatase YccX SW:ACYP_ECOLI (P75877) (92 aa) fasta scores: E(): 5.3e-21%2C 62.0%25 id in 92 aa;gbkey=CDS;product=putative acylphosphatase;protein_id=CAL20097.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1638769	1639032	.	+	.	ID=id3409;Note=Pfam match to entry PF00708 Acylphosphatase%2CAcylphosphatase%2C score 51.80%2C E-value 1.5e-11;gbkey=misc_feature;inference=protein motif:PF00708
AL590842.1	EMBL	sequence_feature	1638790	1638822	.	+	.	ID=id3410;Note=PS00150 Acylphosphatase signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS00150
AL590842.1	EMBL	sequence_feature	1638862	1638912	.	+	.	ID=id3411;Note=PS00151 Acylphosphatase signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00151
AL590842.1	EMBL	gene	1639093	1639419	.	-	.	ID=gene1437;Name=YPO1447;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1447
AL590842.1	EMBL	CDS	1639093	1639419	.	-	0	ID=cds1407;Parent=gene1437;Dbxref=GOA:Q8ZG65,InterPro:IPR007453,InterPro:IPR025526,NCBI_GP:CAL20098.1;Name=CAL20098.1;Note=Similar to Archaeoglobus fulgidus sulfite reductase%2Cdesulfoviridin-type subunit gamma protein AF2228 TR:O28055 (EMBL:AE000951) (115 aa) fasta scores: E(): 7.2e-16%2C 39.8%25 id in 113 aa%2C and to Escherichia coli hypothetical protein YccK SW:YCCK_ECOLI (P45572) (109 aa) fasta scores: E(): 0%2C80.6%25 id in 108 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE000951;product=putative sulfite reductase subunit protein;protein_id=CAL20098.1;transl_table=11
AL590842.1	EMBL	tRNA	1639663	1639750	.	+	.	ID=rna36;Note=tRNA Ser anticodon TGA%2C Cove score 74.25;gbkey=tRNA;product=tRNA-Ser
AL590842.1	EMBL	exon	1639663	1639750	.	+	.	ID=id3412;Parent=rna36;Note=tRNA Ser anticodon TGA%2C Cove score 74.25;gbkey=tRNA;product=tRNA-Ser
AL590842.1	EMBL	gene	1639931	1640457	.	+	.	ID=gene1438;Name=tnpA;end_range=1640457,.;gbkey=Gene;gene=tnpA;gene_biotype=other;locus_tag=YPO1448;partial=true;start_range=.,1639931
AL590842.1	EMBL	mRNA	1639931	1640457	.	+	.	ID=rna37;Parent=gene1438;Note=Similar to Erwinia herbicola IS1327 transposase TnpA TR:P94785 (EMBL:X87144) (234 aa) fasta scores: E(): 0%2C67.5%25 id in 169 aa%2C and to Yersinia pseudotuberculosis transposase Tnp TR:AAG45432 (EMBL:AF324349) (106 aa) fasta scores: E(): 0%2C 97.0%25 id in 99 aa. Contains a frameshift after codon 76 and is truncated at the C-terminus. Probable gene remnant%3B~was marked partial;end_range=1640457,.;gbkey=mRNA;gene=tnpA;inference=similar to sequence:INSDC:X87144;partial=true;product=transposase (partial);start_range=.,1639931
AL590842.1	EMBL	exon	1639931	1640457	.	+	.	ID=id3413;Parent=rna37;Note=Similar to Erwinia herbicola IS1327 transposase TnpA TR:P94785 (EMBL:X87144) (234 aa) fasta scores: E(): 0%2C67.5%25 id in 169 aa%2C and to Yersinia pseudotuberculosis transposase Tnp TR:AAG45432 (EMBL:AF324349) (106 aa) fasta scores: E(): 0%2C 97.0%25 id in 99 aa. Contains a frameshift after codon 76 and is truncated at the C-terminus. Probable gene remnant%3B~was marked partial;end_range=1640457,.;gbkey=mRNA;gene=tnpA;inference=similar to sequence:INSDC:X87144;partial=true;product=transposase (partial);start_range=.,1639931
AL590842.1	EMBL	sequence_feature	1640161	1640346	.	+	.	ID=id3414;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 23.40%2C E-value 1.4e-05;gbkey=misc_feature;gene=tnpA;inference=protein motif:PF00665
AL590842.1	EMBL	gene	1640827	1642940	.	+	.	ID=gene1439;Name=cnf;end_range=1642940,.;gbkey=Gene;gene=cnf;gene_biotype=other;locus_tag=YPO1449;partial=true;start_range=.,1640827
AL590842.1	EMBL	mRNA	1640827	1642940	.	+	.	ID=rna38;Parent=gene1439;Note=Similar to C-terminal regions of Escherichia coli cytotoxic necrotizing factor type 2 Cnf2 TR:Q47107 (EMBL:U01097) (1014 aa) fasta scores: E(): 0%2C 61.8%25 id in 706 aa%2C and Yersinia pseudotuberculosis cytotoxic necrotizing factor Cnf TR:AAG45433 (EMBL:AF324349) (1014 aa) fasta scores: E(): 0%2C 97.0%25 id in 704 aa. CDS contains nonsense and frameshift mutations%2C and appears to be truncated at the C-terminus. Probable gene remnant%3B~was marked partial;end_range=1642940,.;gbkey=mRNA;gene=cnf;inference=similar to sequence:INSDC:U01097;partial=true;product=cytotoxic necrotizing factor (partial);start_range=.,1640827
AL590842.1	EMBL	exon	1640827	1642940	.	+	.	ID=id3415;Parent=rna38;Note=Similar to C-terminal regions of Escherichia coli cytotoxic necrotizing factor type 2 Cnf2 TR:Q47107 (EMBL:U01097) (1014 aa) fasta scores: E(): 0%2C 61.8%25 id in 706 aa%2C and Yersinia pseudotuberculosis cytotoxic necrotizing factor Cnf TR:AAG45433 (EMBL:AF324349) (1014 aa) fasta scores: E(): 0%2C 97.0%25 id in 704 aa. CDS contains nonsense and frameshift mutations%2C and appears to be truncated at the C-terminus. Probable gene remnant%3B~was marked partial;end_range=1642940,.;gbkey=mRNA;gene=cnf;inference=similar to sequence:INSDC:U01097;partial=true;product=cytotoxic necrotizing factor (partial);start_range=.,1640827
AL590842.1	EMBL	gene	1643068	1645485	.	-	.	ID=gene1440;Name=YPO1451;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1451
AL590842.1	EMBL	CDS	1643068	1645485	.	-	0	ID=cds1408;Parent=gene1440;Dbxref=GOA:Q0WGW9,InterPro:IPR006093,InterPro:IPR006094,InterPro:IPR012951,InterPro:IPR016166,InterPro:IPR016167,InterPro:IPR016169,InterPro:IPR016181,UniProtKB/TrEMBL:Q0WGW9,NCBI_GP:CAL20099.1;Name=CAL20099.1;Note=C-terminal region similar to similar to Arthrobacter oxidans 6-hydroxy-D-nicotine oxidase SW:HDNO_ARTOX (P08159) (458 aa) fasta scores: E(): 1.7e-20%2C 27.5%25 id in 466 aa%2Cand Mycobacterium tuberculosis probable oxidoreductase MTCY25C11.01 TR:O33177 (EMBL:Z97345) (446 aa) fasta scores: E(): 0%2C 32.5%25 id in 424 aa. Possible alternative translational start sites;gbkey=CDS;inference=similar to sequence:INSDC:Z97345;product=putative oxidoreductase;protein_id=CAL20099.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1643812	1643886	.	-	.	ID=id3416;Note=PS01159 WW/rsp5/WWP domain signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01159
AL590842.1	EMBL	sequence_feature	1643839	1644444	.	-	.	ID=id3417;Note=Pfam match to entry PF01565 FAD_binding_4%2C FAD binding domain%2C score 46.70%2C E-value 5.3e-10;gbkey=misc_feature;inference=protein motif:PF01565
AL590842.1	EMBL	sequence_feature	1644220	1644321	.	-	.	ID=id3418;Note=PS00862 Oxygen oxidoreductases covalent FAD-binding site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00862
AL590842.1	EMBL	gene	1645639	1646385	.	-	.	ID=gene1441;Name=YPO1452;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1452
AL590842.1	EMBL	CDS	1645639	1646385	.	-	0	ID=cds1409;Parent=gene1441;Dbxref=GOA:Q7CHM2,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:Q7CHM2,NCBI_GP:CAL20100.1;Name=CAL20100.1;Note=Similar to Pseudomonas paucimobilis 2%2C5-dichloro-2%2C5-cyclohexadiene-1%2C4-diol dehydrogenase LinC SW:LINC_PSEPA (P50197) (250 aa) fasta scores: E(): 4.8e-27%2C37.0%25 id in 246 aa%2C and to Acinetobacter sp SE19 cyclohexanol dehydrogenase ChnA TR:AAG10026 (EMBL:AF282240) (251 aa) fasta scores: E(): 1.8e-26%2C 33.3%25 id in 246 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF282240;product=putative short chain dehydrogenase;protein_id=CAL20100.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1645663	1645755	.	-	.	ID=id3419;Note=Pfam match to entry PF00678 adh_short_C2%2C Short chain dehydrogenase/reductase C-terminus%2C score 24.50%2CE-value 3.3e-05;gbkey=misc_feature;inference=protein motif:PF00678
AL590842.1	EMBL	sequence_feature	1645822	1646379	.	-	.	ID=id3420;Note=Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase%2C score 184.70%2C E-value 1.5e-51;gbkey=misc_feature;inference=protein motif:PF00106
AL590842.1	EMBL	sequence_feature	1645885	1645971	.	-	.	ID=id3421;Note=PS00061 Short-chain dehydrogenases/reductases family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00061
AL590842.1	EMBL	sequence_feature	1646146	1646196	.	-	.	ID=id3422;Note=PS00237 G-protein coupled receptors signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00237
AL590842.1	EMBL	gene	1647014	1647334	.	+	.	ID=gene1442;Name=YPO1453;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1453
AL590842.1	EMBL	CDS	1647014	1647334	.	+	0	ID=cds1410;Parent=gene1442;Dbxref=UniProtKB/TrEMBL:Q7CHM3,NCBI_GP:CAL20101.1;Name=CAL20101.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20101.1;transl_table=11
AL590842.1	EMBL	gene	1647664	1648122	.	+	.	ID=gene1443;Name=YPO1454;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1454
AL590842.1	EMBL	CDS	1647664	1648122	.	+	0	ID=cds1411;Parent=gene1443;Dbxref=InterPro:IPR013114,InterPro:IPR029069,UniProtKB/TrEMBL:Q0WGW6,NCBI_GP:CAL20102.1;Name=CAL20102.1;Note=Similar to Streptococcus agalactiae putative hemolysin production protein CylZ TR:Q9X431 (EMBL:AF093787) (131 aa) fasta scores: E(): 1.9e-08%2C 33.8%25 id in 130 aa. N-terminus is similar to N-terminal region of Escherichia coli (3R)-hydroxymyristoyl [acyl carrier protein] dehydrase FabZ SW:FABZ_ECOLI (P21774) (151 aa) fasta scores: E(): 6.9e-08%2C 45.6%25 id in 68 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF093787;product=putative (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydrase;protein_id=CAL20102.1;transl_table=11
AL590842.1	EMBL	gene	1648112	1649395	.	+	.	ID=gene1444;Name=YPO1455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1455
AL590842.1	EMBL	CDS	1648112	1649395	.	+	0	ID=cds1412;Parent=gene1444;Dbxref=GOA:Q7CHM4,InterPro:IPR014030,InterPro:IPR014031,InterPro:IPR016038,InterPro:IPR016039,UniProtKB/TrEMBL:Q7CHM4,NCBI_GP:CAL20103.1;Name=CAL20103.1;Note=Similar to Hordeum vulgare beta-ketoacyl-ACP synthase TR:Q40028 (EMBL:Z34269) (489 aa) fasta scores: E(): 9.6e-33%2C 32.5%25 id in 434 aa%2C and to Cuphea wrightii beta-ketoacyl-ACP synthase II TR:P93117 (EMBL:U67316) (517 aa) fasta scores: E(): 2.1e-32%2C 33.6%25 id in 425 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z34269;product=putative beta-ketoacyl-[acyl-carrier-protein] synthase;protein_id=CAL20103.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1648127	1649389	.	+	.	ID=id3423;Note=Pfam match to entry PF00109 ketoacyl-synt%2CBeta-ketoacyl synthase%2C score 219.50%2C E-value 5.1e-62;gbkey=misc_feature;inference=protein motif:PF00109
AL590842.1	EMBL	sequence_feature	1648994	1649059	.	+	.	ID=id3424;Note=Predicted helix-turn-helix motif with score 1118 (+2.99 SD) at aa 295-316%2C sequence RVIQDVLKKCNISPEQVDYVSA;gbkey=misc_feature
AL590842.1	EMBL	gene	1649388	1650134	.	+	.	ID=gene1445;Name=YPO1456;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1456
AL590842.1	EMBL	CDS	1649388	1650134	.	+	0	ID=cds1413;Parent=gene1445;Dbxref=GOA:Q0WGW4,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:Q0WGW4,NCBI_GP:CAL20104.1;Name=CAL20104.1;Note=Similar to Escherichia coli 3-oxoacyl-[acyl-carrier protein] reductase FabG SW:FABG_ECOLI (P25716) (244 aa) fasta scores: E(): 1.9e-25%2C 34.7%25 id in 245 aa%2C and to Streptomyces antibioticus putative 3-oxoacyl-[ACP]-reductase%2C involved in aminocoumarin biosynthesis TR:AAG34189 (EMBL:AF321122) (246 aa) fasta scores: E(): 3.1e-26%2C 38.3%25 id in 240 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF321122;product=putative beta-ketoacyl-[acyl-carrier-protein] reductase;protein_id=CAL20104.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1649397	1649957	.	+	.	ID=id3425;Note=Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase%2C score 153.30%2C E-value 4.3e-42;gbkey=misc_feature;inference=protein motif:PF00106
AL590842.1	EMBL	sequence_feature	1649808	1649894	.	+	.	ID=id3426;Note=PS00061 Short-chain dehydrogenases/reductases family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00061
AL590842.1	EMBL	sequence_feature	1650015	1650107	.	+	.	ID=id3427;Note=Pfam match to entry PF00678 adh_short_C2%2C Short chain dehydrogenase/reductase C-terminus%2C score 44.10%2CE-value 7.6e-11;gbkey=misc_feature;inference=protein motif:PF00678
AL590842.1	EMBL	gene	1650150	1651388	.	+	.	ID=gene1446;Name=YPO1457;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1457
AL590842.1	EMBL	CDS	1650150	1651388	.	+	0	ID=cds1414;Parent=gene1446;Dbxref=GOA:Q7CHM5,InterPro:IPR013528,InterPro:IPR013746,InterPro:IPR016038,InterPro:IPR016039,UniProtKB/TrEMBL:Q7CHM5,NCBI_GP:CAL20105.1;Name=CAL20105.1;Note=Similar to Streptococcus pneumoniae HMG-CoA synthase MvaS TR:AAG02453 (EMBL:AF290098) (398 aa) fasta scores: E(): 1.7e-22%2C 33.8%25 id in 391 aa%2C and to Myxococcus xanthus polyketide antibiotic TA post-modification protein Tac TR:Q9XB06 (EMBL:AJ132503) (420 aa) fasta scores: E(): 2.1e-31%2C 34.0%25 id in 424 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ132503;product=putative hydroxymethylglutaryl-coenzyme A synthase;protein_id=CAL20105.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1650153	1651385	.	+	.	ID=id3428;Note=Pfam match to entry PF01154 HMG_CoA_synt%2CHydroxymethylglutaryl-coenzyme A synthase%2C score -157.20%2CE-value 9e-10;gbkey=misc_feature;inference=protein motif:PF01154
AL590842.1	EMBL	sequence_feature	1650666	1650689	.	+	.	ID=id3429;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1651083	1651115	.	+	.	ID=id3430;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	1651381	1652100	.	+	.	ID=gene1447;Name=YPO1458;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1458
AL590842.1	EMBL	CDS	1651381	1652100	.	+	0	ID=cds1415;Parent=gene1447;Dbxref=GOA:Q0WGW2,InterPro:IPR001753,InterPro:IPR029045,UniProtKB/TrEMBL:Q0WGW2,NCBI_GP:CAL20106.1;Name=CAL20106.1;Note=Similar to Homo sapiens mitochondria enoyl-CoA hydratase ECHS1 SW:ECHM_HUMAN (P30084) (290 aa) fasta scores: E(): 1.2e-07%2C 27.8%25 id in 198 aa%2C and to Amycolatopsis orientalis putative vancomycin biosynthesis protein PCZA361.9 TR:O52797 (EMBL:AJ223998) (267 aa) fasta scores: E(): 1.8e-08%2C 27.2%25 id in 235 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ223998;product=putative enoyl-CoA hydratase;protein_id=CAL20106.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1651387	1651866	.	+	.	ID=id3431;Note=Pfam match to entry PF00378 ECH%2C Enoyl-CoA hydratase/isomerase family%2C score 68.00%2C E-value 2e-16;gbkey=misc_feature;inference=protein motif:PF00378
AL590842.1	EMBL	sequence_feature	1651726	1651758	.	+	.	ID=id3432;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	1652093	1652854	.	+	.	ID=gene1448;Name=YPO1459;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1459
AL590842.1	EMBL	CDS	1652093	1652854	.	+	0	ID=cds1416;Parent=gene1448;Dbxref=GOA:Q0WGW1,InterPro:IPR001753,InterPro:IPR018376,InterPro:IPR029045,UniProtKB/TrEMBL:Q0WGW1,NCBI_GP:CAL20107.1;Name=CAL20107.1;Note=Similar to an internal region of Rattus norvegicus mitochondrial enoyl-CoA hydratase ECHS1 SW:ECHM_RAT (P14604) (290 aa) fasta scores: E(): 1.5e-13%2C 25.2%25 id in 238 aa%2C and to Bacillus subtilis putative polyketide biosynthesis enoyl-CoA hydratase homolog PksI SW:PKSI_BACSU (P40802) (249 aa) fasta scores: E(): 7.3e-24%2C 33.5%25 id in 248 aa;gbkey=CDS;product=putative enoyl-CoA hydratase;protein_id=CAL20107.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1652141	1652647	.	+	.	ID=id3433;Note=Pfam match to entry PF00378 ECH%2C Enoyl-CoA hydratase/isomerase family%2C score 102.00%2C E-value 1.2e-26;gbkey=misc_feature;inference=protein motif:PF00378
AL590842.1	EMBL	sequence_feature	1652396	1652458	.	+	.	ID=id3434;Note=PS00166 Enoyl-CoA hydratase/isomerase signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00166
AL590842.1	EMBL	gene	1652857	1653645	.	+	.	ID=gene1449;Name=YPO1460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1460
AL590842.1	EMBL	CDS	1652857	1653645	.	+	0	ID=cds1417;Parent=gene1449;Dbxref=InterPro:IPR002347,InterPro:IPR016040,UniProtKB/TrEMBL:Q7CHM6,NCBI_GP:CAL20108.1;Name=CAL20108.1;Note=Similar to Spodoptera littoralis 3-dehydroecdysone 3alpha-reductase TR:Q9NBB5 (EMBL:AF255341) (249 aa) fasta scores: E(): 4.6e-09%2C 28.4%25 id in 243 aa%2C and to Thermoplasma acidophilum 3-ketoacyl-acyl carrier protein reductase related protein TA0251 TR:CAC11396 (EMBL:AL445063) (255 aa) fasta scores: E(): 3.1e-11%2C 28.3%25 id in 269 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL445063;product=putative short chain dehydrogenase;protein_id=CAL20108.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1652878	1653420	.	+	.	ID=id3435;Note=Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase%2C score 44.90%2C E-value 1.8e-09;gbkey=misc_feature;inference=protein motif:PF00106
AL590842.1	EMBL	gene	1653684	1654172	.	+	.	ID=gene1450;Name=YPO1461;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1461
AL590842.1	EMBL	CDS	1653684	1654172	.	+	0	ID=cds1418;Parent=gene1450;Dbxref=InterPro:IPR024311,UniProtKB/TrEMBL:Q7CHM7,NCBI_GP:CAL20109.1;Name=CAL20109.1;Note=Poor database matches%2C similar to Caenorhabditis elegans hypothetical protein T08D2.1 TR:Q9XTX6 (EMBL:Z92839) (167 aa) fasta scores: E(): 6.2%2C 24.3%25 id in 148 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z92839;product=hypothetical protein;protein_id=CAL20109.1;transl_table=11
AL590842.1	EMBL	gene	1654210	1654458	.	+	.	ID=gene1451;Name=YPO1462;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1462
AL590842.1	EMBL	CDS	1654210	1654458	.	+	0	ID=cds1419;Parent=gene1451;Dbxref=InterPro:IPR009081,UniProtKB/TrEMBL:Q74VF6,NCBI_GP:CAL20110.1;Name=CAL20110.1;Note=Similar to Escherichia coli acyl carrier protein AcpP SW:ACP_ECOLI (P02901) (77 aa) fasta scores: E(): 0.12%2C33.3%25 id in 63 aa%2C and to Vibrio marinus acyl carrier protein AcpP TR:Q9RA32 (EMBL:AB021978) (78 aa) fasta scores: E(): 0.0026%2C 38.4%25 id in 73 aa;gbkey=CDS;inference=similar to sequence:INSDC:AB021978;product=putative acyl carrier protein;protein_id=CAL20110.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1654243	1654434	.	+	.	ID=id3436;Note=Pfam match to entry PF00550 pp-binding%2CPhosphopantetheine attachment site%2C score 21.40%2C E-value 0.00027;gbkey=misc_feature;inference=protein motif:PF00550
AL590842.1	EMBL	gene	1654557	1655405	.	+	.	ID=gene1452;Name=YPO1463;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1463
AL590842.1	EMBL	CDS	1654557	1655405	.	+	0	ID=cds1420;Parent=gene1452;Dbxref=GOA:Q7CHM8,InterPro:IPR001227,InterPro:IPR014043,InterPro:IPR016035,InterPro:IPR016036,InterPro:IPR024925,UniProtKB/TrEMBL:Q7CHM8,NCBI_GP:CAL20111.1;Name=CAL20111.1;Note=Similar to Bacillus subtilis malonyl CoA-acyl carrier protein transacylase FabD SW:FABD_BACSU (P71019) (317 aa) fasta scores: E(): 4.5e-28%2C 36.2%25 id in 290 aa%2Cand to Bacillus subtilis putative polyketide synthesis protein PksC TR:O34825 (EMBL:Z99112) (288 aa) fasta scores: E(): 0%2C 45.1%25 id in 275 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z99112;product=putative acyl transferase;protein_id=CAL20111.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1654569	1655402	.	+	.	ID=id3437;Note=Pfam match to entry PF00698 Acyl_transf%2C Acyl transferase domain%2C score 2.10%2C E-value 4.3e-10;gbkey=misc_feature;inference=protein motif:PF00698
AL590842.1	EMBL	gene	1655562	1655729	.	+	.	ID=gene1453;Name=YPO1464;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1464
AL590842.1	EMBL	CDS	1655562	1655729	.	+	0	ID=cds1421;Parent=gene1453;Dbxref=UniProtKB/TrEMBL:Q0WGV6,NCBI_GP:CAL20112.1;Name=CAL20112.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20112.1;transl_table=11
AL590842.1	EMBL	gene	1656394	1656894	.	+	.	ID=gene1454;Name=YPO1465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1465
AL590842.1	EMBL	CDS	1656394	1656894	.	+	0	ID=cds1422;Parent=gene1454;Dbxref=InterPro:IPR008312,UniProtKB/TrEMBL:Q0WGV5,NCBI_GP:CAL20113.1;Name=CAL20113.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA1657 TR:AAG05046 (EMBL:AE004593) (168 aa) fasta scores: E(): 1.3e-18%2C 39.2%25 id in 158 aa%2C and to Vibrio cholerae hypothetical protein VCA0107 TR:Q9KN58 (EMBL:AE004353) (168 aa) fasta scores: E(): 2.7e-18%2C 41.0%25 id in 156 aa. Highly similar to YPO0978 (97.6%25 identity in 166 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AE004593;product=conserved hypothetical protein;protein_id=CAL20113.1;transl_table=11
AL590842.1	EMBL	gene	1656937	1658487	.	+	.	ID=gene1455;Name=YPO1466;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1466
AL590842.1	EMBL	CDS	1656937	1658487	.	+	0	ID=cds1423;Parent=gene1455;Dbxref=InterPro:IPR010269,UniProtKB/TrEMBL:Q74QK4,NCBI_GP:CAL20114.1;Name=CAL20114.1;Note=Similar to Vibrio cholerae hypothetical protein VCA0108 TR:Q9KN57 (EMBL:AE004353) (492 aa) fasta scores: E(): 0%2C 43.9%25 id in 488 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA1658 TR:AAG05047 (EMBL:AE004593) (491 aa) fasta scores: E(): 0%2C 44.0%25 id in 450 aa. CDS contains sequence divergence at the N-terminus. Highly similar to YPO0977 (98.8%25 identity in 516 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AE004593;product=conserved hypothetical protein;protein_id=CAL20114.1;transl_table=11
AL590842.1	EMBL	gene	1658499	1659851	.	+	.	ID=gene1456;Name=YPO1467;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1467
AL590842.1	EMBL	CDS	1658499	1659851	.	+	0	ID=cds1424;Parent=gene1456;Dbxref=InterPro:IPR010263,UniProtKB/TrEMBL:Q74QK3,NCBI_GP:CAL20115.1;Name=CAL20115.1;Note=Similar to Vibrio cholerae hypothetical protein VCA0114 TR:Q9KN51 (EMBL:AE004353) (444 aa) fasta scores: E(): 4.9e-31%2C 28.4%25 id in 450 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0079 TR:AAG03469 (EMBL:AE004447) (444 aa) fasta scores: E(): 4.1e-30%2C 28.7%25 id in 449 aa. Highly similar to YPO0976 (98.9%25 identity in 450 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AE004447;product=conserved hypothetical protein;protein_id=CAL20115.1;transl_table=11
AL590842.1	EMBL	gene	1659848	1660534	.	+	.	ID=gene1457;Name=YPO1468;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1468
AL590842.1	EMBL	CDS	1659848	1660534	.	+	0	ID=cds1425;Parent=gene1457;Dbxref=InterPro:IPR017732,UniProtKB/TrEMBL:Q7CHN1,NCBI_GP:CAL20116.1;Name=CAL20116.1;Note=Some similarity to Vibrio cholerae hypothetical protein VCA0115 TR:Q9KN50 (EMBL:AE004353) (257 aa) fasta scores: E(): 3.2e-05%2C 25.2%25 id in 206 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA2362 TR:AAG05750 (EMBL:AE004662) (252 aa) fasta scores: E(): 0.016%2C 30.1%25 id in 153 aa. Identical to YPO0975 (100.0%25 identity in 228 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AE004662;product=putative membrane protein;protein_id=CAL20116.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1660424	1660483	.	+	.	ID=id3438;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1660534	1662270	.	+	.	ID=gene1458;Name=YPO1469;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1469
AL590842.1	EMBL	CDS	1660534	1662270	.	+	0	ID=cds1426;Parent=gene1458;Dbxref=InterPro:IPR006665,UniProtKB/TrEMBL:Q74VF0,NCBI_GP:CAL20117.1;Name=CAL20117.1;Note=Internal region of the CDS is similar to the C-terminus of Pseudomonas fluorescens outer membrane protein OprF TR:Q9S4R5 (EMBL:AF117969) (326 aa) fasta scores: E(): 3.6e-09%2C 35.9%25 id in 181 aa%2C and Pseudomonas stutzeri A15 outer membrane protein OprF TR:Q9XCZ6 (EMBL:AF117972) (321 aa) fasta scores: E(): 1.8e-08%2C 33.7%25 id in 205 aa. Very similar to YPO0974 (99.5%25 identity in 578 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AF117972;product=putative exported protein;protein_id=CAL20117.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1661872	1662162	.	+	.	ID=id3439;Note=Pfam match to entry PF00691 OmpA%2C OmpA family%2C score 57.20%2C E-value 3.7e-13;gbkey=misc_feature;inference=protein motif:PF00691
AL590842.1	EMBL	gene	1662274	1662765	.	+	.	ID=gene1459;Name=YPO1470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1470
AL590842.1	EMBL	CDS	1662274	1662765	.	+	0	ID=cds1427;Parent=gene1459;Dbxref=InterPro:IPR008514,UniProtKB/TrEMBL:Q7CHN3,NCBI_GP:CAL20118.1;Name=CAL20118.1;Note=Similar to Vibrio cholerae secreted hydrophilic protein HcpA TR:P72350 (EMBL:S81006) (172 aa) fasta scores: E(): 4e-18%2C 37.8%25 id in 143 aa%2C and to Pseudomonas aeruginosa secreted protein Hcp TR:AAG04901 (EMBL:AE004939) (172 aa) fasta scores: E(): 1.7e-17%2C 35.5%25 id in 166 aa. CDS does not have an N-terminal signal sequence. Identical to YPO0973 (100.0%25 identity in 163 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:S81006;product=conserved hypothetical protein;protein_id=CAL20118.1;transl_table=11
AL590842.1	EMBL	gene	1663153	1665795	.	+	.	ID=gene1460;Name=YPO1471;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1471
AL590842.1	EMBL	CDS	1663153	1665795	.	+	0	ID=cds1428;Parent=gene1460;Dbxref=GOA:Q74VE8,InterPro:IPR001270,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR017729,InterPro:IPR018368,InterPro:IPR019489,InterPro:IPR023150,InterPro:IPR027417,UniProtKB/TrEMBL:Q74VE8,NCBI_GP:CAL20119.1;Name=CAL20119.1;Note=Similar to Escherichia coli ClpB protein%2C which is thought to form part of a multi-chaperone system supressing protein aggregation%2C SW:CLPB_ECOLI (P03815) (857 aa) fasta scores: E(): 0%2C 39.0%25 identity in 871 aa overlap%2C and to Yersinia enterocolitica Clp protease-associated protein ClpB TR:AAG00524 (EMBL:AF285784) (890 aa) fasta scores: E(): 0%2C 44.0%25 id in 868 aa. Very similar to YPO0971 (95.0%25 identity in 879 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AF285784;product=putative ATPase subunit of ATP-dependent protease;protein_id=CAL20119.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1663861	1664445	.	+	.	ID=id3440;Note=Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA)%2C score 43.00%2CE-value 6.8e-09;gbkey=misc_feature;inference=protein motif:PF00004
AL590842.1	EMBL	sequence_feature	1663876	1663899	.	+	.	ID=id3441;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1664140	1664178	.	+	.	ID=id3442;Note=PS00870 Chaperonins clpA/B signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS00870
AL590842.1	EMBL	sequence_feature	1665007	1665030	.	+	.	ID=id3443;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1665628	1665645	.	+	.	ID=id3444;Note=PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.;gbkey=misc_feature;inference=protein motif:ProSite:PS00343
AL590842.1	EMBL	gene	1665798	1668146	.	+	.	ID=gene1461;Name=YPO1472;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1472
AL590842.1	EMBL	CDS	1665798	1668146	.	+	0	ID=cds1429;Parent=gene1461;Dbxref=InterPro:IPR006531,InterPro:IPR006533,InterPro:IPR017847,InterPro:IPR018769,InterPro:IPR027440,InterPro:IPR028244,UniProtKB/TrEMBL:Q74VE7,NCBI_GP:CAL20120.1;Name=CAL20120.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA0095 TR:AAG03485 (EMBL:AE004448) (741 aa) fasta scores: E(): 4.1e-20%2C 23.5%25 id in 771 aa. N-terminal region is similar to the N-terminus of Pseudomonas aeruginosa hypothetical protein PA3486 TR:AAG06874 (EMBL:AE004769) (808 aa) fasta scores: E(): 4.6e-28%2C 29.0%25 id in 531 aa. Very similar to YPO0970 (94.6%25 identity in 782 aa overlap). C-terminal region is similar to YPO0967 (97.2%25 identity in 211 aa overlap) and YPO0962 (94.8%25 identity in 211 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AE004769;product=conserved hypothetical protein;protein_id=CAL20120.1;transl_table=11
AL590842.1	EMBL	gene	1668162	1670462	.	+	.	ID=gene1462;Name=YPO1473;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1473
AL590842.1	EMBL	CDS	1668162	1670462	.	+	0	ID=cds1430;Parent=gene1462;Dbxref=InterPro:IPR011055,InterPro:IPR016047,InterPro:IPR023346,UniProtKB/TrEMBL:Q74VE6,NCBI_GP:CAL20121.1;Name=CAL20121.1;Note=No significant database hits. Similar to YPO0966 (83.2%25 identity in 768 aa overlap) and YPO1476 (51.9%25 identity in 567 aa overlap);gbkey=CDS;product=hypothetical protein;protein_id=CAL20121.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1668465	1668542	.	+	.	ID=id3445;Note=PS00107 Protein kinases ATP-binding region signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00107
AL590842.1	EMBL	gene	1670459	1671232	.	+	.	ID=gene1463;Name=YPO1474;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1474
AL590842.1	EMBL	CDS	1670459	1671232	.	+	0	ID=cds1431;Parent=gene1463;Dbxref=UniProtKB/TrEMBL:Q7CHN4,NCBI_GP:CAL20122.1;Name=CAL20122.1;Note=No significant database matches to the full length CDS. Some similarity to an internal region of Methanococcus jannaschii hypothetical protein MJECl28 SW:YZ28_METJA (Q60287) (1272 aa) fasta scores: E(): 1.2%2C 28.1%25 id in 160 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL20122.1;transl_table=11
AL590842.1	EMBL	gene	1671386	1671646	.	+	.	ID=gene1464;Name=YPO1475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1475
AL590842.1	EMBL	CDS	1671386	1671646	.	+	0	ID=cds1432;Parent=gene1464;Dbxref=InterPro:IPR018769,UniProtKB/TrEMBL:Q7CHN5,NCBI_GP:CAL20123.1;Name=CAL20123.1;Note=No significant database hits to the full length CDS. Similar to an internal region of Pseudomonas aeruginosa hypothetical protein PA0262 TR:AAG03651 (EMBL:AE004464) (1019 aa) fasta scores: E(): 0.00017%2C 33.8%25 id in 74 aa. Highly similar to the C-terminal regions of YPO0962 (86.0%25 identity in 86 aa overlap)%2C YPO0967 (79.1%25 identity in 86 aa overlap)%2C YPO1472 (77.9%25 identity in 86 aa overlap) and YPO0970 (73.3%25 identity in 86 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AE004464;product=hypothetical protein;protein_id=CAL20123.1;transl_table=11
AL590842.1	EMBL	gene	1671662	1673845	.	+	.	ID=gene1465;Name=YPO1476;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1476
AL590842.1	EMBL	CDS	1671662	1673845	.	+	0	ID=cds1433;Parent=gene1465;Dbxref=InterPro:IPR011055,InterPro:IPR016047,InterPro:IPR023346,UniProtKB/TrEMBL:Q74VE3,NCBI_GP:CAL20124.1;Name=CAL20124.1;Note=No significant database hits to the full length CDS. Weakly similar to an internal region of Xenopus laevis neural-cadherin 1 protein SW:CADN_XENLA (P20310) (905 aa) fasta scores: E(): 1.7%2C 21.7%25 id in 323 aa. Similar to YPO0966 (52.1%25 identity in 570 aa overlap) and YPO1473 (51.7%25 identity in 567 aa overlap);gbkey=CDS;product=hypothetical protein;protein_id=CAL20124.1;transl_table=11
AL590842.1	EMBL	gene	1674018	1674488	.	+	.	ID=gene1466;Name=YPO1477;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1477
AL590842.1	EMBL	CDS	1674018	1674488	.	+	0	ID=cds1434;Parent=gene1466;Dbxref=UniProtKB/TrEMBL:Q7CHN6,NCBI_GP:CAL20125.1;Name=CAL20125.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20125.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1674198	1674221	.	+	.	ID=id3446;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1674956	1675823	.	-	.	ID=gene1467;Name=YPO1480;end_range=1675823,.;gbkey=Gene;gene_biotype=other;locus_tag=YPO1480;partial=true;start_range=.,1674956
AL590842.1	EMBL	mRNA	1674956	1675823	.	-	.	ID=rna39;Parent=gene1467;Note=Similar to Shigella sonnei transposase TR:Q9S0S4 (EMBL:AB029445) (343 aa) fasta scores: E(): 0%2C 53.1%25 id in 337 aa%2C and to Salmonella Salmonella enterica IS630 transposase TR:Q53933 (EMBL:D10689) (345 aa) fasta scores: E(): 0%2C 55.5%25 id in 337 aa. Contains frameshift and nonsense mutations%2C and an internal deletion relative to other othologues. Probable gene remnant%3B~was marked partial;end_range=1675823,.;gbkey=mRNA;inference=similar to sequence:INSDC:D10689;partial=true;product=transposase (partial);start_range=.,1674956
AL590842.1	EMBL	exon	1674956	1675823	.	-	.	ID=id3447;Parent=rna39;Note=Similar to Shigella sonnei transposase TR:Q9S0S4 (EMBL:AB029445) (343 aa) fasta scores: E(): 0%2C 53.1%25 id in 337 aa%2C and to Salmonella Salmonella enterica IS630 transposase TR:Q53933 (EMBL:D10689) (345 aa) fasta scores: E(): 0%2C 55.5%25 id in 337 aa. Contains frameshift and nonsense mutations%2C and an internal deletion relative to other othologues. Probable gene remnant%3B~was marked partial;end_range=1675823,.;gbkey=mRNA;inference=similar to sequence:INSDC:D10689;partial=true;product=transposase (partial);start_range=.,1674956
AL590842.1	EMBL	gene	1676764	1677885	.	+	.	ID=gene1468;Name=YPO1481;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1481
AL590842.1	EMBL	CDS	1676764	1677885	.	+	0	ID=cds1435;Parent=gene1468;Dbxref=UniProtKB/TrEMBL:Q74VE0,NCBI_GP:CAL20126.1;Name=CAL20126.1;Note=Poor database matches%2C similar to an internal fragment of Gallus gallus transcriptional regulator protein Mll TR:Q9YGM0 (EMBL:AJ011003) (945 aa) fasta scores: E(): 4.4%2C 21.0%25 id in 300 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ011003;product=hypothetical protein;protein_id=CAL20126.1;transl_table=11
AL590842.1	EMBL	gene	1677882	1681304	.	+	.	ID=gene1469;Name=YPO1482;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1482
AL590842.1	EMBL	CDS	1677882	1681304	.	+	0	ID=cds1436;Parent=gene1469;Dbxref=InterPro:IPR009612,InterPro:IPR010623,UniProtKB/TrEMBL:Q7CHN7,NCBI_GP:CAL20127.1;Name=CAL20127.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA1669 TR:AAG05058 (EMBL:AE004594) (1175 aa) fasta scores: E(): 5.7e-12%2C 22.7%25 id in 1225 aa%2C and to Legionella pneumophila conjugation associated protein IcmF TR:O54529 (EMBL:Y15044) (973 aa) fasta scores: E(): 1.5e-05%2C 20.6%25 id in 1069 aa;gbkey=CDS;inference=similar to sequence:INSDC:Y15044;product=putative membrane protein;protein_id=CAL20127.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1677918	1677986	.	+	.	ID=id3448;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1678029	1678097	.	+	.	ID=id3449;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1678989	1679057	.	+	.	ID=id3450;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1679025	1679075	.	+	.	ID=id3451;Note=PS00237 G-protein coupled receptors signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00237
AL590842.1	EMBL	gene	1681348	1682949	.	+	.	ID=gene1470;Name=YPO1483;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1483
AL590842.1	EMBL	CDS	1681348	1682949	.	+	0	ID=cds1437;Parent=gene1470;Dbxref=InterPro:IPR010657,InterPro:IPR017739,UniProtKB/TrEMBL:Q7CHN8,NCBI_GP:CAL20128.1;Name=CAL20128.1;Note=Weakly similar to Pseudomonas aeruginosa hypothetical protein PA1656 TR:AAG05045 (EMBL:AE004593) (518 aa) fasta scores: E(): 3.3e-19%2C 26.5%25 id in 480 aa%2Cand to Vibrio cholerae hypothetical protein VCA0119 TR:Q9KN46 (EMBL:AE004353) (469 aa) fasta scores: E(): 0.00019%2C 23.6%25 id in 487 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004593;product=hypothetical protein;protein_id=CAL20128.1;transl_table=11
AL590842.1	EMBL	gene	1682940	1684025	.	+	.	ID=gene1471;Name=YPO1484;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1484
AL590842.1	EMBL	CDS	1682940	1684025	.	+	0	ID=cds1438;Parent=gene1471;Dbxref=InterPro:IPR008727,InterPro:IPR028946,UniProtKB/TrEMBL:Q74VD8,NCBI_GP:CAL20129.1;Name=CAL20129.1;Note=No significant database hits. N-terminal region is similar to the N-terminus of YPO0873 (62.1%25 identity in 124 aa overlap);gbkey=CDS;product=hypothetical protein;protein_id=CAL20129.1;transl_table=11
AL590842.1	EMBL	gene	1684025	1684495	.	+	.	ID=gene1472;Name=YPO1484a;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1484a
AL590842.1	EMBL	CDS	1684025	1684495	.	+	0	ID=cds1439;Parent=gene1472;Dbxref=UniProtKB/TrEMBL:Q7CHN9,NCBI_GP:CAL20130.1;Name=CAL20130.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20130.1;transl_table=11
AL590842.1	EMBL	gene	1684716	1686479	.	+	.	ID=gene1473;Name=YPO1485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1485
AL590842.1	EMBL	CDS	1684716	1686479	.	+	0	ID=cds1440;Parent=gene1473;Dbxref=InterPro:IPR010272,UniProtKB/TrEMBL:Q7CHP0,NCBI_GP:CAL20131.1;Name=CAL20131.1;Note=Similar to Vibrio cholerae hypothetical protein VCA0110 TR:Q9KN55 (EMBL:AE004353) (589 aa) fasta scores: E(): 0%2C 31.2%25 id in 593 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA2369 TR:AAG05757 (EMBL:AE004663) (597 aa) fasta scores: E(): 0%2C 29.3%25 id in 610 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004663;product=conserved hypothetical protein;protein_id=CAL20131.1;transl_table=11
AL590842.1	EMBL	gene	1686443	1687528	.	+	.	ID=gene1474;Name=YPO1486;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1486
AL590842.1	EMBL	CDS	1686443	1687528	.	+	0	ID=cds1441;Parent=gene1474;Dbxref=InterPro:IPR010732,UniProtKB/TrEMBL:Q7CHP1,NCBI_GP:CAL20132.1;Name=CAL20132.1;Note=Similar to Vibrio cholerae hypothetical protein VCA0111 TR:Q9KN54 (EMBL:AE004353) (338 aa) fasta scores: E(): 9.8e-19%2C 27.3%25 id in 322 aa%2C and to Escherichia coli O157:H7 hypothetical protein Z0259 TR:AAG54528 (EMBL:AE005198) (360 aa) fasta scores: E(): 2e-17%2C 30.9%25 id in 317 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE005198;product=conserved hypothetical protein;protein_id=CAL20132.1;transl_table=11
AL590842.1	EMBL	gene	1687596	1688084	.	+	.	ID=gene1475;Name=YPO1487;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1487
AL590842.1	EMBL	CDS	1687596	1688084	.	+	0	ID=cds1442;Parent=gene1475;Dbxref=InterPro:IPR017734,UniProtKB/TrEMBL:Q0WGT5,NCBI_GP:CAL20133.1;Name=CAL20133.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein Pa1666 TR:AAG05055 (EMBL:AE004594) (168 aa) fasta scores: E(): 0.00016%2C 28.4%25 id in 134 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004594;product=conserved hypothetical protein;protein_id=CAL20133.1;transl_table=11
AL590842.1	EMBL	gene	1688084	1688536	.	+	.	ID=gene1476;Name=YPO1488;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1488
AL590842.1	EMBL	CDS	1688084	1688536	.	+	0	ID=cds1443;Parent=gene1476;Dbxref=GOA:Q74VD3,InterPro:IPR007048,InterPro:IPR015801,InterPro:IPR017737,UniProtKB/TrEMBL:Q74VD3,NCBI_GP:CAL20134.1;Name=CAL20134.1;Note=Poor database matches%2C N-terminus similar to N-terminal region of Pseudomonas aeruginosa hypothetical protein PA1659 TR:AAG05048 (EMBL:AE004593) (135 aa) fasta scores: E(): 7e-05%2C 30.0%25 id in 120 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004593;product=conserved hypothetical protein;protein_id=CAL20134.1;transl_table=11
AL590842.1	EMBL	gene	1688561	1689928	.	+	.	ID=gene1477;Name=YPO1489;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1489
AL590842.1	EMBL	CDS	1688561	1689928	.	+	0	ID=cds1444;Parent=gene1477;Dbxref=InterPro:IPR010657,InterPro:IPR021069,UniProtKB/TrEMBL:Q7CHP2,NCBI_GP:CAL20135.1;Name=CAL20135.1;Note=Poor database hits%2C weakly similar to Vibrio cholerae hypothetical protein VCA0121 TR:Q9KN44 (EMBL:AE004353) (421 aa) fasta scores: E(): 2e-06%2C 22.5%25 id in 445 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004353;product=hypothetical protein;protein_id=CAL20135.1;transl_table=11
AL590842.1	EMBL	gene	1690140	1690763	.	-	.	ID=gene1478;Name=YPO1490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1490
AL590842.1	EMBL	CDS	1690140	1690763	.	-	0	ID=cds1445;Parent=gene1478;Dbxref=UniProtKB/TrEMBL:Q7CHP3,NCBI_GP:CAL20136.1;Name=CAL20136.1;Note=Poor database hits%2C weakly similar to the N-terminal region of Vibrio cholerae aldo/keto reductase family protein VC0667 TR:Q9KU57 (EMBL:AE004153) (352 aa) fasta scores: E(): 2.2%2C 25.4%25 id in 189 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004153;product=hypothetical protein;protein_id=CAL20136.1;transl_table=11
AL590842.1	EMBL	gene	1691446	1693041	.	+	.	ID=gene1479;Name=ybiT;gbkey=Gene;gene=ybiT;gene_biotype=protein_coding;locus_tag=YPO1491
AL590842.1	EMBL	CDS	1691446	1693041	.	+	0	ID=cds1446;Parent=gene1479;Dbxref=GOA:Q0WGT1,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WGT1,NCBI_GP:CAL20137.1;Name=CAL20137.1;Note=Similar to Escherichia coli hypothetical ABC transporter ATP-binding protein YbiT SW:YBIT_ECOLI (P75790) (530 aa) fasta scores: E(): 0%2C 87.0%25 id in 529 aa%2C and to Vibrio cholerae ABC transporter%2C ATP-binding protein VC1520 TR:Q9KRW4 (EMBL:AE004230) (530 aa) fasta scores: E(): 0%2C75.6%25 id in 529 aa;gbkey=CDS;gene=ybiT;inference=similar to sequence:INSDC:AE004230;product=ABC transporter ATP-binding protein;protein_id=CAL20137.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1691524	1692129	.	+	.	ID=id3452;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 139.20%2C E-value 7.4e-38;gbkey=misc_feature;gene=ybiT;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1691545	1691568	.	+	.	ID=id3453;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ybiT;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1692478	1692978	.	+	.	ID=id3454;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 158.10%2C E-value 1.5e-43;gbkey=misc_feature;gene=ybiT;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1692499	1692522	.	+	.	ID=id3455;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ybiT;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1693269	1693922	.	+	.	ID=gene1480;Name=YPO1492;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1492
AL590842.1	EMBL	CDS	1693269	1693922	.	+	0	ID=cds1447;Parent=gene1480;Dbxref=UniProtKB/TrEMBL:Q7CHP4,NCBI_GP:CAL20138.1;Name=CAL20138.1;Note=Poor database hits%2C C-terminus similar to C-terminal region of to Methanococcus jannaschii hypothetical protein MJ0629 SW:Y629_METJA (Q58046) (214 aa) fasta scores: E(): 0.45%2C 24.4%25 id in 160 aa;gbkey=CDS;product=hypothetical protein;protein_id=CAL20138.1;transl_table=11
AL590842.1	EMBL	repeat_region	1693931	1695245	.	-	.	ID=id3456;Note=insertion sequence:IS285;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	1693931	1693959	.	+	.	ID=id3457;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1693966	1695174	.	-	.	ID=gene1481;Name=y1062;gbkey=Gene;gene=y1062;gene_biotype=protein_coding;locus_tag=YPO1493
AL590842.1	EMBL	CDS	1693966	1695174	.	-	0	ID=cds1448;Parent=gene1481;Dbxref=GOA:O68779,InterPro:IPR001207,UniProtKB/TrEMBL:O68779,NCBI_GP:CAL20139.1;Name=CAL20139.1;Note=Previously sequenced as Yersinia pestis transposase Y1062 TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa. Similar to Escherichia coli transposase-like protein TnpA TR:AAG18473 (EMBL:AF143819) (402 aa) fasta scores: E(): 0%2C 76.1%25 id in 402 aa;gbkey=CDS;gene=y1062;inference=similar to sequence:INSDC:AF143819;product=transposase;protein_id=CAL20139.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1694038	1695174	.	-	.	ID=id3458;Note=Pfam match to entry PF00872 Transpo_mutator%2CTransposase%2C Mutator family%2C score 430.40%2C E-value 1.6e-125;gbkey=misc_feature;gene=y1062;inference=protein motif:PF00872
AL590842.1	EMBL	sequence_feature	1694407	1694481	.	-	.	ID=id3459;Note=PS01007 Transposases%2C Mutator family%2C signature.;gbkey=misc_feature;gene=y1062;inference=protein motif:ProSite:PS01007
AL590842.1	EMBL	INVERTED	1695217	1695245	.	-	.	ID=id3460;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1695310	1696077	.	-	.	ID=gene1482;Name=chlN;gbkey=Gene;gene=chlN;gene_biotype=protein_coding;gene_synonym=moeB;locus_tag=YPO1494
AL590842.1	EMBL	CDS	1695310	1696077	.	-	0	ID=cds1449;Parent=gene1482;Dbxref=GOA:Q0WGS8,InterPro:IPR000594,InterPro:IPR007901,InterPro:IPR009036,InterPro:IPR012730,InterPro:IPR016040,UniProtKB/TrEMBL:Q0WGS8,NCBI_GP:CAL20140.1;Name=CAL20140.1;Note=Similar to Escherichia coli molybdopterin biosynthesis protein MoeB SW:MOEB_ECOLI (P12282) (249 aa) fasta scores: E(): 0%2C 69.2%25 id in 247 aa%2C and to Salmonella typhimurium molybdopterin biosynthesis protein MoeB SW:MOEB_SALTY (Q56067) (249 aa) fasta scores: E(): 0%2C 67.2%25 id in 247 aa;gbkey=CDS;gene=chlN;product=molybdopterin biosynthesis protein;protein_id=CAL20140.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1695580	1695990	.	-	.	ID=id3461;Note=Pfam match to entry PF00899 ThiF_family%2C ThiF family%2C score 203.10%2C E-value 4.3e-57;gbkey=misc_feature;gene=chlN;inference=protein motif:PF00899
AL590842.1	EMBL	sequence_feature	1695946	1695978	.	-	.	ID=id3462;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=chlN;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	1696082	1697356	.	-	.	ID=gene1483;Name=bisB;gbkey=Gene;gene=bisB;gene_biotype=protein_coding;gene_synonym=chlE,moeA,narE;locus_tag=YPO1495
AL590842.1	EMBL	CDS	1696082	1697356	.	-	0	ID=cds1450;Parent=gene1483;Dbxref=GOA:Q7CHP6,InterPro:IPR001453,InterPro:IPR005110,InterPro:IPR005111,InterPro:IPR008284,InterPro:IPR020817,UniProtKB/TrEMBL:Q7CHP6,NCBI_GP:CAL20141.1;Name=CAL20141.1;Note=Similar to Escherichia coli molybdopterin biosynthesis protein MoeA SW:MOEA_ECOLI (P12281) (411 aa) fasta scores: E(): 0%2C 68.1%25 id in 407 aa%2C and to Salmonella typhimurium molybdopterin biosynthesis protein MoeA SW:MOEA_SALTY (Q56066) (412 aa) fasta scores: E(): 0%2C 65.0%25 id in 408 aa;gbkey=CDS;gene=bisB;product=molybdopterin biosynthesis protein;protein_id=CAL20141.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1696139	1697332	.	-	.	ID=id3463;Note=Pfam match to entry PF00994 MoCF_biosynth%2CMolybdenum cofactor biosynthesis protein%2C score 588.60%2CE-value 3.9e-173;gbkey=misc_feature;gene=bisB;inference=protein motif:PF00994
AL590842.1	EMBL	sequence_feature	1696490	1696591	.	-	.	ID=id3464;Note=PS01079 Molybdenum cofactor biosynthesis proteins signature 2.;gbkey=misc_feature;gene=bisB;inference=protein motif:ProSite:PS01079
AL590842.1	EMBL	gene	1697891	1699201	.	-	.	ID=gene1484;Name=YPO1496;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1496
AL590842.1	EMBL	CDS	1697891	1699201	.	-	0	ID=cds1451;Parent=gene1484;Dbxref=GOA:Q7CHP7,InterPro:IPR007197,InterPro:IPR013785,InterPro:IPR023885,UniProtKB/TrEMBL:Q7CHP7,NCBI_GP:CAL20142.1;Name=CAL20142.1;Note=Weakly similar to Bacteroides thetaiotaomicron chondro-6-sulfatase regulatory protein ChuR SW:CHUR_BACTN (Q02550) (401 aa) fasta scores: E(): 1e-17%2C 25.5%25 id in 388 aa%2C and to Escherichia coli hypothetical protein YdeM SW:YDEM_ECOLI (P76134) (385 aa) fasta scores: E(): 8.7e-24%2C28.3%25 id in 361 aa;gbkey=CDS;product=putative heme-binding protein;protein_id=CAL20142.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1698743	1698823	.	-	.	ID=id3465;Note=PS01159 WW/rsp5/WWP domain signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01159
AL590842.1	EMBL	sequence_feature	1698923	1698940	.	-	.	ID=id3466;Note=PS00190 Cytochrome c family heme-binding site signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00190
AL590842.1	EMBL	gene	1699211	1699879	.	-	.	ID=gene1485;Name=YPO1497;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1497
AL590842.1	EMBL	CDS	1699211	1699879	.	-	0	ID=cds1452;Parent=gene1485;Dbxref=GOA:Q7CHP8,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CHP8,NCBI_GP:CAL20143.1;Name=CAL20143.1;Note=Similar to Streptococcus cristatus ATP-binding cassette protein TptC TR:O54499 (EMBL:U96166) (224 aa) fasta scores: E(): 0%2C 46.2%25 id in 221 aa%2C and to Staphylococcus aureus ABC transporter ATP-binding protein VraD TR:Q9RL74 (EMBL:Y18641) (252 aa) fasta scores: E(): 5.8e-31%2C 42.3%25 id in 222 aa;gbkey=CDS;inference=similar to sequence:INSDC:Y18641;product=ABC transporter ATP-binding protein;protein_id=CAL20143.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1699232	1699789	.	-	.	ID=id3467;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 217.20%2C E-value 2.5e-61;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1699412	1699456	.	-	.	ID=id3468;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	1699745	1699768	.	-	.	ID=id3469;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1699881	1701143	.	-	.	ID=gene1486;Name=YPO1498;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1498
AL590842.1	EMBL	CDS	1699881	1701143	.	-	0	ID=cds1453;Parent=gene1486;Dbxref=UniProtKB/TrEMBL:Q7CHP9,NCBI_GP:CAL20144.1;Name=CAL20144.1;Note=Similar to Neisseria gonorrhoeae efflux pump protein FarA TR:Q9RQ30 (EMBL:AF132909) (394 aa) fasta scores: E(): 2.1e-05%2C 22.0%25 id in 300 aa%2C and to Neisseria meningitidis fatty acid efflux system protein NMB0318 TR:Q9K160 (EMBL:AE002389) (384 aa) fasta scores: E(): 3.1e-05%2C 22.0%25 id in 300 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF132909;product=putative exported protein;protein_id=CAL20144.1;transl_table=11
AL590842.1	EMBL	gene	1701145	1703505	.	-	.	ID=gene1487;Name=YPO1499;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1499
AL590842.1	EMBL	CDS	1701145	1703505	.	-	0	ID=cds1454;Parent=gene1487;Dbxref=UniProtKB/TrEMBL:Q74VC2,NCBI_GP:CAL20145.1;Name=CAL20145.1;Note=No significant database matches;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL20145.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1701181	1701246	.	-	.	ID=id3470;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1701286	1701342	.	-	.	ID=id3471;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1701433	1701498	.	-	.	ID=id3472;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1702195	1702260	.	-	.	ID=id3473;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1702330	1702395	.	-	.	ID=id3474;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1702456	1702521	.	-	.	ID=id3475;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1702609	1702674	.	-	.	ID=id3476;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1703395	1703460	.	-	.	ID=id3477;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1703589	1703801	.	-	.	ID=gene1488;Name=YPO1500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1500
AL590842.1	EMBL	CDS	1703589	1703801	.	-	0	ID=cds1455;Parent=gene1488;Dbxref=UniProtKB/TrEMBL:Q74VC1,NCBI_GP:CAL20146.1;Name=CAL20146.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20146.1;transl_table=11
AL590842.1	EMBL	gene	1704058	1704900	.	-	.	ID=gene1489;Name=YPO1501;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1501
AL590842.1	EMBL	CDS	1704058	1704900	.	-	0	ID=cds1456;Parent=gene1489;Dbxref=GOA:Q7CHQ0,InterPro:IPR000801,InterPro:IPR014186,InterPro:IPR029058,UniProtKB/TrEMBL:Q7CHQ0,NCBI_GP:CAL20147.1;Name=CAL20147.1;Note=Similar to Homo sapiens esterase D SW:ESTD_Human (P10768) (282 aa) fasta scores: E(): 0%2C 50.9%25 id in 279 aa%2Cand to Escherichia coli hypothetical 31.3 kDa protein in folE-cirA intergenic region YeiG SW:YEIG_ECOLI (P33018) (278 aa) fasta scores: E(): 0%2C 73.2%25 id in 276 aa;gbkey=CDS;product=putative esterase;protein_id=CAL20147.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1704070	1704684	.	-	.	ID=id3478;Note=Pfam match to entry PF00756 Esterase%2C Putative esterase%2C score 328.60%2C E-value 7.3e-95;gbkey=misc_feature;inference=protein motif:PF00756
AL590842.1	EMBL	gene	1704921	1706054	.	-	.	ID=gene1490;Name=YPO1502;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1502
AL590842.1	EMBL	CDS	1704921	1706054	.	-	0	ID=cds1457;Parent=gene1490;Dbxref=GOA:Q0WGS0,InterPro:IPR002085,InterPro:IPR002328,InterPro:IPR011032,InterPro:IPR013149,InterPro:IPR013154,InterPro:IPR014183,InterPro:IPR016040,UniProtKB/TrEMBL:Q0WGS0,NCBI_GP:CAL20148.1;Name=CAL20148.1;Note=Similar to Escherichia coli formaldehyde dehydrogenase TR:Q59399 (EMBL:X73835) (369 aa) fasta scores: E(): 0%2C 72.6%25 id in 369 aa%2C and to Acinetobacter baumannii glutathione-dependent formaldehyde dehydrogenase Gd-FaldH TR:Q9S4L6 (EMBL:AF130307) (369 aa) fasta scores: E(): 0%2C 71.3%25 id in 369 aa. There is an alternative methionine start codon upstream%3B~deleted EC_number 1.2.1.1;gbkey=CDS;inference=similar to sequence:INSDC:X73835;product=probable alcohol dehydrogenase;protein_id=CAL20148.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1704945	1706012	.	-	.	ID=id3479;Note=Pfam match to entry PF00107 adh_zinc%2C Zinc-binding dehydrogenases%2C score 473.70%2C E-value 1.4e-138;gbkey=misc_feature;inference=protein motif:PF00107
AL590842.1	EMBL	sequence_feature	1705419	1705484	.	-	.	ID=id3480;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1705827	1705871	.	-	.	ID=id3481;Note=PS00059 Zinc-containing alcohol dehydrogenases signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00059
AL590842.1	EMBL	gene	1706334	1707203	.	-	.	ID=gene1491;Name=YPO1503;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1503
AL590842.1	EMBL	CDS	1706334	1707203	.	-	0	ID=cds1458;Parent=gene1491;Dbxref=GOA:Q7CHQ1,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CHQ1,NCBI_GP:CAL20149.1;Name=CAL20149.1;Note=Similar to Pseudomonas aeruginosa probable transcriptional regulator TR:AAG04802 (EMBL:AE004571) (290 aa) fasta scores: E(): 0%2C 53.8%25 id in 277 aa%2C and to E. coli hypothetical transcriptional regulator YneJ SW:YNEJ_ECOLI (P77309) (293 aa) fasta scores: E(): 51.6%25 id in 289 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004571;product=putative LysR-family transcriptional regulatory protein;protein_id=CAL20149.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1706775	1707197	.	-	.	ID=id3482;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 125.90%2C E-value 7.5e-34;gbkey=misc_feature;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	1707063	1707155	.	-	.	ID=id3483;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00044
AL590842.1	EMBL	gene	1707339	1708490	.	+	.	ID=gene1492;Name=YPO1504;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1504
AL590842.1	EMBL	CDS	1707339	1708490	.	+	0	ID=cds1459;Parent=gene1492;Dbxref=InterPro:IPR010645,InterPro:IPR016196,UniProtKB/TrEMBL:Q7CHQ2,NCBI_GP:CAL20150.1;Name=CAL20150.1;Note=Some similarity to Streptomyces viridifaciens valanimycin resistant protein VlmF TR:Q9LA76 (EMBL:AF148322) (402 aa) fasta scores: E(): 0.015%2C 26.3%25 id in 358 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA1412 TR: Q9I3T2(EMBL:AE004570) (397 aa) fasta scores: E(): 0%2C 46.1%25 id in 371 aa. Contains a possible N-terminal signal sequence;gbkey=CDS;inference=similar to sequence:INSDC:AF148322;product=putative exported protein;protein_id=CAL20150.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1707453	1707512	.	+	.	ID=id3484;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1707549	1707617	.	+	.	ID=id3485;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1707627	1707683	.	+	.	ID=id3486;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1707720	1707788	.	+	.	ID=id3487;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1707816	1707875	.	+	.	ID=id3488;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1707948	1708016	.	+	.	ID=id3489;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1708044	1708103	.	+	.	ID=id3490;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1708137	1708196	.	+	.	ID=id3491;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1708206	1708265	.	+	.	ID=id3492;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1708302	1708370	.	+	.	ID=id3493;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1708398	1708451	.	+	.	ID=id3494;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1708674	1709336	.	+	.	ID=gene1493;Name=folE;gbkey=Gene;gene=folE;gene_biotype=protein_coding;locus_tag=YPO1505
AL590842.1	EMBL	CDS	1708674	1709336	.	+	0	ID=cds1460;Parent=gene1493;Dbxref=GOA:Q8ZG15,InterPro:IPR001474,InterPro:IPR018234,InterPro:IPR020602,NCBI_GP:CAL20151.1;Name=CAL20151.1;Note=Similar to Escherichia coli GTP cyclohydrolase I SW:GCH1_ECOLI (P27511) (221 aa) fasta scores: E(): 0%2C 90.0%25 id in 219 aa%2C and to Vibrio cholerae GTP cyclohydrolase Vca0616 TR:Q9KLX5 (EMBL:AE004391) (230 aa) fasta scores: E(): 0%2C 70.2%25 id in 218 aa;gbkey=CDS;gene=folE;inference=similar to sequence:INSDC:AE004391;product=GTP cyclohydrolase I;protein_id=CAL20151.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1708779	1709327	.	+	.	ID=id3495;Note=Pfam match to entry PF01227 GTP_cyclohydroI%2C GTP cyclohydrolase I%2C score 403.00%2C E-value 2.8e-117;gbkey=misc_feature;gene=folE;inference=protein motif:PF01227
AL590842.1	EMBL	sequence_feature	1708959	1709009	.	+	.	ID=id3496;Note=PS00859 GTP cyclohydrolase I signature 1.;gbkey=misc_feature;gene=folE;inference=protein motif:ProSite:PS00859
AL590842.1	EMBL	sequence_feature	1709103	1709135	.	+	.	ID=id3497;Note=PS00860 GTP cyclohydrolase I signature 2.;gbkey=misc_feature;gene=folE;inference=protein motif:ProSite:PS00860
AL590842.1	EMBL	gene	1709391	1710557	.	+	.	ID=gene1494;Name=yeiB;gbkey=Gene;gene=yeiB;gene_biotype=protein_coding;locus_tag=YPO1506
AL590842.1	EMBL	CDS	1709391	1710557	.	+	0	ID=cds1461;Parent=gene1494;Dbxref=InterPro:IPR007349,UniProtKB/TrEMBL:Q74VB6,NCBI_GP:CAL20152.1;Name=CAL20152.1;Note=Similar to Escherichia coli hypothetical 43.4 kDa protein in galS-folE intergenic region yeiB SW:YEIB_ECOLI (P25747) (385 aa) fasta scores: E(): 0%2C 60.4%25 id in 376 aa%2Cand to Halobacterium sp. (strain NRC-1)( Q9HNH9)(401 aa) fasta scores: E(): 0%2C 34.4%25 id in 390 aa. Contains a possible N-terminal signal sequence;gbkey=CDS;gene=yeiB;inference=protein motif:TMHMM:2.0;product=putative exported protein;protein_id=CAL20152.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1709538	1709606	.	+	.	ID=id3498;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeiB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1709640	1709699	.	+	.	ID=id3499;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeiB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1709712	1709759	.	+	.	ID=id3500;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeiB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1709778	1709846	.	+	.	ID=id3501;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeiB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1709988	1710056	.	+	.	ID=id3502;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeiB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1710090	1710158	.	+	.	ID=id3503;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeiB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1710216	1710284	.	+	.	ID=id3504;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeiB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1710318	1710377	.	+	.	ID=id3505;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeiB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1710405	1710473	.	+	.	ID=id3506;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeiB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1711305	1712312	.	+	.	ID=gene1495;Name=mglB;gbkey=Gene;gene=mglB;gene_biotype=protein_coding;locus_tag=YPO1507
AL590842.1	EMBL	CDS	1711305	1712312	.	+	0	ID=cds1462;Parent=gene1495;Dbxref=InterPro:IPR025997,InterPro:IPR028082,UniProtKB/TrEMBL:Q0WGR5,NCBI_GP:CAL20153.1;Name=CAL20153.1;Note=Similar to Escherichia coli D-galactose-binding periplasmic protein precursor MglB SW:DGAL_ECOLI (P02927) (332 aa) fasta scores: E(): 0%2C 84.2%25 id in 336 aa%2C and to Citrobacter freundii D-galactose-binding periplasmic protein precursor MglB SW:DGAL_CITFR (P23925) (332 aa) fasta scores: E(): 0%2C 86.9%25 id in 335 aa;gbkey=CDS;gene=mglB;product=galactose-binding protein;protein_id=CAL20153.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1711389	1712180	.	+	.	ID=id3507;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 22.90%2C E-value 3.9e-07;gbkey=misc_feature;gene=mglB;inference=protein motif:PF00532
AL590842.1	EMBL	gene	1712542	1714062	.	+	.	ID=gene1496;Name=mglA;gbkey=Gene;gene=mglA;gene_biotype=protein_coding;locus_tag=YPO1508
AL590842.1	EMBL	CDS	1712542	1714062	.	+	0	ID=cds1463;Parent=gene1496;Dbxref=GOA:Q7CHQ3,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR015862,InterPro:IPR017871,InterPro:IPR027417,NCBI_GP:CAL20154.1;Name=CAL20154.1;Note=Similar to Escherichia coli galactoside transport ATP-binding protein MglA SW:MGLA_ECOLI (P23199) (506 aa) fasta scores: E(): 0%2C 88.9%25 id in 506 aa%2C and to Salmonella typhimurium galactoside transport ATP-binding protein MglA SW:MGLA_SALTY (P23924) (506 aa) fasta scores: E(): 0%2C 89.7%25 id in 496 aa;gbkey=CDS;gene=mglA;product=galactoside transport ATP-binding protein;protein_id=CAL20154.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1712656	1713216	.	+	.	ID=id3508;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 168.70%2C E-value 9.7e-47;gbkey=misc_feature;gene=mglA;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1712677	1712700	.	+	.	ID=id3509;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=mglA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1713406	1713987	.	+	.	ID=id3510;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 68.10%2C E-value 1.9e-16;gbkey=misc_feature;gene=mglA;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1713760	1713804	.	+	.	ID=id3511;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=mglA;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	1714083	1715093	.	+	.	ID=gene1497;Name=mglC;gbkey=Gene;gene=mglC;gene_biotype=protein_coding;locus_tag=YPO1509
AL590842.1	EMBL	CDS	1714083	1715093	.	+	0	ID=cds1464;Parent=gene1497;Dbxref=GOA:Q74VB3,InterPro:IPR001851,UniProtKB/TrEMBL:Q74VB3,NCBI_GP:CAL20155.1;Name=CAL20155.1;Note=Similar to Escherichia coli galactoside transport system permease protein MglC SW:MGLC_ECOLI (P23200) (336 aa) fasta scores: E(): 0%2C 89.3%25 id in 336 aa%2C and to Vibrio cholerae galactoside ABC transporter%2C permease protein vc1328 TR:Q9KSD0 (EMBL:AE004212) (337 aa) fasta scores: E(): 0%2C 81.3%25 id in 327 aa;gbkey=CDS;gene=mglC;inference=similar to sequence:INSDC:AE004212;product=galactoside permease;protein_id=CAL20155.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1714116	1714175	.	+	.	ID=id3512;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=mglC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1714380	1714448	.	+	.	ID=id3513;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=mglC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1714461	1714529	.	+	.	ID=id3514;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=mglC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1714629	1714688	.	+	.	ID=id3515;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=mglC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1714749	1714817	.	+	.	ID=id3516;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=mglC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1714860	1714919	.	+	.	ID=id3517;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=mglC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1714938	1715006	.	+	.	ID=id3518;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=mglC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1715016	1715072	.	+	.	ID=id3519;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=mglC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1715538	1716275	.	-	.	ID=gene1498;Name=sanA;gbkey=Gene;gene=sanA;gene_biotype=protein_coding;locus_tag=YPO1510
AL590842.1	EMBL	CDS	1715538	1716275	.	-	0	ID=cds1465;Parent=gene1498;Dbxref=InterPro:IPR003848,InterPro:IPR014729,InterPro:IPR023604,UniProtKB/TrEMBL:Q7CHQ4,NCBI_GP:CAL20156.1;Name=CAL20156.1;Note=Similar to Escherichia coli inner membrane protein SanA protein SW:SANA_ECOLI (P33017) (239 aa) fasta scores: E(): 0%2C 80.1%25 id in 236 aa%2C and to Salmonella typhimurium Sfi protein TR:O33790 (EMBL:AJ002276) (187 aa) fasta scores: E(): 0%2C 79.6%25 id in 167 aa;gbkey=CDS;gene=sanA;inference=similar to sequence:INSDC:AJ002276;product=putative exported protein;protein_id=CAL20156.1;transl_table=11
AL590842.1	EMBL	gene	1716556	1718253	.	-	.	ID=gene1499;Name=maeA;gbkey=Gene;gene=maeA;gene_biotype=protein_coding;gene_synonym=sfcA;locus_tag=YPO1511
AL590842.1	EMBL	CDS	1716556	1718253	.	-	0	ID=cds1466;Parent=gene1499;Dbxref=GOA:Q8ZG09,InterPro:IPR001891,InterPro:IPR012301,InterPro:IPR012302,InterPro:IPR015884,InterPro:IPR016040,InterPro:IPR023667,NCBI_GP:CAL20157.1;Name=CAL20157.1;Note=Similar to Escherichia coli NAD-dependent malic enzyme SfcA or MaeA SW:MAO1_ECOLI (P26616) (574 aa) fasta scores: E(): 0%2C 75.0%25 id in 564 aa%2C and to Schizosaccharomyces pombe NAD-dependent malic enzyme Mae2 or Spcc794.11C SW:MAOX_SCHPO (P40375) (565 aa) fasta scores: E(): 0%2C 41.8%25 id in 562 aa;gbkey=CDS;gene=maeA;product=NAD-dependent malic enzyme;protein_id=CAL20157.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1716571	1718205	.	-	.	ID=id3520;Note=Pfam match to entry PF00390 malic%2C Malic enzyme%2Cscore 914.50%2C E-value 3.1e-271;gbkey=misc_feature;gene=maeA;inference=protein motif:PF00390
AL590842.1	EMBL	sequence_feature	1717405	1717455	.	-	.	ID=id3521;Note=PS00331 Malic enzymes signature.;gbkey=misc_feature;gene=maeA;inference=protein motif:ProSite:PS00331
AL590842.1	EMBL	gene	1718609	1719493	.	-	.	ID=gene1500;Name=cdd;gbkey=Gene;gene=cdd;gene_biotype=protein_coding;locus_tag=YPO1512
AL590842.1	EMBL	CDS	1718609	1719493	.	-	0	ID=cds1467;Parent=gene1500;Dbxref=GOA:Q8ZG08,InterPro:IPR002125,InterPro:IPR006263,InterPro:IPR013171,InterPro:IPR016192,InterPro:IPR016193,InterPro:IPR020797,NCBI_GP:CAL20158.1;Name=CAL20158.1;Note=Similar to Escherichia coli cytidine deaminase Cdd SW:CDD_ECOLI (P13652) (294 aa) fasta scores: E(): 0%2C 65.1%25 id in 292 aa%2C and to Vibrio cholerae cytidine deaminase Vc1231 TR:Q9KSM5 (EMBL:AE004202) (295 aa) fasta scores: E(): 0%2C 52.1%25 id in 284 aa;gbkey=CDS;gene=cdd;inference=similar to sequence:INSDC:AE004202;product=cytidine deaminase;protein_id=CAL20158.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1719062	1719298	.	-	.	ID=id3522;Note=Pfam match to entry PF00383 dCMP_cyt_deam%2C Cytidine and deoxycytidylate deaminase zinc-binding region%2C score 57.50%2C E-value 2.8e-13;gbkey=misc_feature;gene=cdd;inference=protein motif:PF00383
AL590842.1	EMBL	sequence_feature	1719086	1719190	.	-	.	ID=id3523;Note=PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature.;gbkey=misc_feature;gene=cdd;inference=protein motif:ProSite:PS00903
AL590842.1	EMBL	sequence_feature	1719251	1719274	.	-	.	ID=id3524;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=cdd;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1719819	1720514	.	-	.	ID=gene1501;Name=yohK;gbkey=Gene;gene=yohK;gene_biotype=protein_coding;locus_tag=YPO1513
AL590842.1	EMBL	CDS	1719819	1720514	.	-	0	ID=cds1468;Parent=gene1501;Dbxref=InterPro:IPR005261,InterPro:IPR007300,UniProtKB/TrEMBL:Q7CHQ7,NCBI_GP:CAL20159.1;Name=CAL20159.1;Note=Similar to Escherichia coli hypothetical 24.5 kDa protein in pbpG-cdd intergenic region YohK SW:YOHK_ECOLI (P33373) (231 aa) fasta scores: E(): 0%2C 76.6%25 id in 231 aa%2Cand to Vibrio cholerae hypothetical protein Vc1232 TR:Q9KSM4 (EMBL:AE004202) (224 aa) fasta scores: E(): 0%2C52.9%25 id in 225 aa;gbkey=CDS;gene=yohK;inference=similar to sequence:INSDC:AE004202;product=putative membrane protein;protein_id=CAL20159.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1719846	1719911	.	-	.	ID=id3525;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yohK;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1720014	1720079	.	-	.	ID=id3526;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yohK;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1720179	1720244	.	-	.	ID=id3527;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yohK;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1720347	1720412	.	-	.	ID=id3528;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yohK;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1720458	1720508	.	-	.	ID=id3529;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yohK;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1720511	1720918	.	-	.	ID=gene1502;Name=yohJ;gbkey=Gene;gene=yohJ;gene_biotype=protein_coding;locus_tag=YPO1514
AL590842.1	EMBL	CDS	1720511	1720918	.	-	0	ID=cds1469;Parent=gene1502;Dbxref=GOA:Q8D074,InterPro:IPR005538,InterPro:IPR022957,NCBI_GP:CAL20160.1;Name=CAL20160.1;Note=Similar to Escherichia coli hypothetical 14.6 kDa protein in pbpG-cdd intergenic region YohJ SW:YOHJ_ECOLI (P33372) (132 aa) fasta scores: E(): 4.1e-32%2C 64.4%25 id in 132 aa%2C and to Vibrio cholerae hypothetical protein Vc1233 R:Q9KSM3 (EMBL:AE004202) (129 aa) fasta scores: E(): 6.4e-15%2C 49.1%25 id in 108 aa;gbkey=CDS;gene=yohJ;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL20160.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1720574	1720639	.	-	.	ID=id3530;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=yohJ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1720670	1720720	.	-	.	ID=id3531;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=yohJ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1720742	1720798	.	-	.	ID=id3532;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=yohJ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1720814	1720879	.	-	.	ID=id3533;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=yohJ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1721160	1722341	.	-	.	ID=gene1503;Name=YPO1515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1515
AL590842.1	EMBL	CDS	1721160	1722341	.	-	0	ID=cds1470;Parent=gene1503;Dbxref=GOA:Q7CHQ8,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q7CHQ8,NCBI_GP:CAL20161.1;Name=CAL20161.1;Note=Similar to Bacillus halodurans multidrug resistance protein Bh3211 TR:Q9K7Z6 (EMBL:AP001518) (388 aa) fasta scores: E(): 0%2C 31.5%25 id in 378 aa%2C and to Escherichia coli hypothetical 42.7 kDa protein in marb-dcp intergenic region YdeE SW:YDEE_ECOLI (P31126) (395 aa) fasta scores: E(): 0%2C39.4%25 id in 381 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001518;product=putative multidrug resistance protein;protein_id=CAL20161.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1721169	1721234	.	-	.	ID=id3534;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1721253	1721318	.	-	.	ID=id3535;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1721358	1721423	.	-	.	ID=id3536;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1721442	1721498	.	-	.	ID=id3537;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1721535	1721600	.	-	.	ID=id3538;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1721646	1721702	.	-	.	ID=id3539;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1721796	1721852	.	-	.	ID=id3540;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1721865	1721930	.	-	.	ID=id3541;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1721994	1722050	.	-	.	ID=id3542;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1722066	1722122	.	-	.	ID=id3543;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1722144	1722209	.	-	.	ID=id3544;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1722674	1723930	.	-	.	ID=gene1504;Name=YPO1516;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1516
AL590842.1	EMBL	CDS	1722674	1723930	.	-	0	ID=cds1471;Parent=gene1504;Dbxref=InterPro:IPR011048,UniProtKB/TrEMBL:Q7CHQ9,NCBI_GP:CAL20162.1;Name=CAL20162.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20162.1;transl_table=11
AL590842.1	EMBL	gene	1723945	1725036	.	-	.	ID=gene1505;Name=YPO1517;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1517
AL590842.1	EMBL	CDS	1723945	1725036	.	-	0	ID=cds1472;Parent=gene1505;Dbxref=InterPro:IPR025997,InterPro:IPR028082,UniProtKB/TrEMBL:Q7CHR0,NCBI_GP:CAL20163.1;Name=CAL20163.1;Note=Similar to Salmonella typhimurium D-ribose-binding periplasmic protein precursor RbsB or RbsP SW:RBSB_SALTY (P02926) (296 aa) fasta scores: E(): 0.0026%2C 22.3%25 id in 278 aa%2C and to Escherichia coli ABC transporter periplasmic binding protein YphF precursor SW:YPHF_ECOLI (P77269) (327 aa) fasta scores: E(): 0.0014%2C 26.5%25 id in 257 aa;gbkey=CDS;product=putative sugar ABC transporter;protein_id=CAL20163.1;transl_table=11
AL590842.1	EMBL	gene	1725854	1726381	.	+	.	ID=gene1506;Name=YPO1518;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1518
AL590842.1	EMBL	CDS	1725854	1726381	.	+	0	ID=cds1473;Parent=gene1506;Dbxref=UniProtKB/TrEMBL:Q74VA5,NCBI_GP:CAL20164.1;Name=CAL20164.1;Note=Weakly similar to membrane spanning regions of various eukaryoteic NADH dehydrogenase subunits: Onchocerca volvulus NADH dehydrogenase subunit 5 TR:O47582 (EMBL:AF015193) (531 aa) fasta scores: E(): 0.74%2C 22.6%25 id in 168 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF015193;product=putative membrane protein;protein_id=CAL20164.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1725896	1725961	.	+	.	ID=id3545;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1726022	1726081	.	+	.	ID=id3546;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1726094	1726138	.	+	.	ID=id3547;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1726157	1726225	.	+	.	ID=id3548;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1726268	1726336	.	+	.	ID=id3549;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	repeat_region	1726454	1726579	.	+	.	ID=id3550;Note=Also a member of the IS200-like elements which carry a 'G' at nucleotide position 315 of the complete element. 3' termini is represented by misc_feature 1728530..1729124.%3B~Disrupted IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	repeat_region	1726580	1728533	.	-	.	ID=id3551;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	1726580	1726607	.	+	.	ID=id3552;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1726646	1727428	.	-	.	ID=gene1507;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO1519
AL590842.1	EMBL	CDS	1726646	1727428	.	-	0	ID=cds1474;Parent=gene1507;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL20165.1;Name=CAL20165.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL20165.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1726721	1727260	.	-	.	ID=id3553;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	1727078	1727101	.	-	.	ID=id3554;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1727425	1728447	.	-	.	ID=gene1508;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO1520
AL590842.1	EMBL	CDS	1727425	1728447	.	-	0	ID=cds1475;Parent=gene1508;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL20166.1;Name=CAL20166.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL20166.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1727569	1728102	.	-	.	ID=id3555;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	sequence_feature	1728331	1728396	.	-	.	ID=id3556;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	1728340	1728423	.	-	.	ID=id3557;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	INVERTED	1728506	1728533	.	-	.	ID=id3558;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	repeat_region	1728530	1729124	.	+	.	ID=id3559;Note=Also a member of the IS200-like elements which carry a 'G' at nucleotide position 315 of the complete element. 5' termini is represented by misc_feature 1726454..1726579.%3B~Disrupted IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	1728558	1729016	.	+	.	ID=gene1509;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO1521
AL590842.1	EMBL	CDS	1728558	1729016	.	+	0	ID=cds1476;Parent=gene1509;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL20167.1;Name=CAL20167.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL20167.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1728612	1728923	.	+	.	ID=id3560;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	1729180	1731207	.	-	.	ID=gene1510;Name=metG;gbkey=Gene;gene=metG;gene_biotype=protein_coding;locus_tag=YPO1522
AL590842.1	EMBL	CDS	1729180	1731207	.	-	0	ID=cds1477;Parent=gene1510;Dbxref=GOA:Q8ZG01,InterPro:IPR001412,InterPro:IPR002547,InterPro:IPR004495,InterPro:IPR009080,InterPro:IPR012340,InterPro:IPR014729,InterPro:IPR014758,InterPro:IPR015413,InterPro:IPR023458,InterPro:IPR029038,NCBI_GP:CAL20168.1;Name=CAL20168.1;Note=Similar to Escherichia coli methionyl-tRNA synthetase MetG SW:SYM_ECOLI (P00959) (676 aa) fasta scores: E(): 0%2C 84.9%25 id in 675 aa%2C and to Haemophilus influenzae methionyl-tRNA synthetase MetG or Hi1276 SW:SYM_HAEIN (P43828) (682 aa) fasta scores: E(): 0%2C 67.6%25 id in 683 aa;gbkey=CDS;gene=metG;product=methionyl-tRNA synthetase;protein_id=CAL20168.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1729189	1729473	.	-	.	ID=id3561;Note=Pfam match to entry PF01588 tRNA_bind%2C Putative tRNA binding domain%2C score 147.50%2C E-value 2.3e-40;gbkey=misc_feature;gene=metG;inference=protein motif:PF01588
AL590842.1	EMBL	sequence_feature	1729909	1731207	.	-	.	ID=id3562;Note=Pfam match to entry PF00133 tRNA-synt_1%2C tRNA synthetases class I (I%2C L%2C M and V)%2C score -254.20%2C E-value 0.00015;gbkey=misc_feature;gene=metG;inference=protein motif:PF00133
AL590842.1	EMBL	sequence_feature	1731130	1731165	.	-	.	ID=id3563;Note=PS00178 Aminoacyl-transfer RNA synthetases class-I signature.;gbkey=misc_feature;gene=metG;inference=protein motif:ProSite:PS00178
AL590842.1	EMBL	gene	1731472	1732584	.	+	.	ID=gene1511;Name=YPO1523;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1523
AL590842.1	EMBL	CDS	1731472	1732584	.	+	0	ID=cds1478;Parent=gene1511;Dbxref=GOA:Q7CHR2,InterPro:IPR000808,InterPro:IPR019591,InterPro:IPR025669,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CHR2,NCBI_GP:CAL20169.1;Name=CAL20169.1;Note=Similar to Escherichia coli Mrp protein SW:MRP_ECOLI (P21590) (379 aa) fasta scores: E(): 0%2C 76.8%25 id in 370 aa%2Cand to Haemophilus influenzae Mrp protein homolog SW:MRP_HAEIN (P45135) (386 aa) fasta scores: E(): 0%2C 64.0%25 id in 356 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL20169.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1731817	1731840	.	+	.	ID=id3564;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1732111	1732161	.	+	.	ID=id3565;Note=PS01215 Mrp family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01215
AL590842.1	EMBL	gene	1732829	1733470	.	+	.	ID=gene1512;Name=b2066;gbkey=Gene;gene=b2066;gene_biotype=protein_coding;gene_synonym=udk;locus_tag=YPO1524
AL590842.1	EMBL	CDS	1732829	1733470	.	+	0	ID=cds1479;Parent=gene1512;Dbxref=GOA:Q8ZFZ9,InterPro:IPR000764,InterPro:IPR006083,InterPro:IPR026008,InterPro:IPR027417,NCBI_GP:CAL20170.1;Name=CAL20170.1;Note=Similar to Escherichia coli uridine kinase SW:URK_ECOLI (P31218) (213 aa) fasta scores: E(): 0%2C 91.1%25 id in 213 aa%2C and to Vibrio cholerae uridine kinase vc1038 TR:Q9KT67 (EMBL:AE004185) (219 aa) fasta scores: E(): 0%2C75.0%25 id in 208 aa;gbkey=CDS;gene=b2066;inference=similar to sequence:INSDC:AE004185;product=uridine kinase;protein_id=CAL20170.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1732856	1733443	.	+	.	ID=id3566;Note=Pfam match to entry PF00485 PRK%2CPhosphoribulokinase%2C score 169.40%2C E-value 2.8e-47;gbkey=misc_feature;gene=b2066;inference=protein motif:PF00485
AL590842.1	EMBL	sequence_feature	1732871	1732894	.	+	.	ID=id3567;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=b2066;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1733575	1734156	.	+	.	ID=gene1513;Name=b2065;gbkey=Gene;gene=b2065;gene_biotype=protein_coding;gene_synonym=dcd,dus,paxA;locus_tag=YPO1525
AL590842.1	EMBL	CDS	1733575	1734156	.	+	0	ID=cds1480;Parent=gene1513;Dbxref=GOA:Q8ZFZ8,InterPro:IPR008180,InterPro:IPR011962,InterPro:IPR029054,NCBI_GP:CAL20171.1;Name=CAL20171.1;Note=Similar to Escherichia coli deoxycytidine triphosphate deaminase SW:DCD_ECOLI (P28248) (193 aa) fasta scores: E(): 0%2C 90.7%25 id in 193 aa%2C and to Haemophilus influenzae deoxycytidine triphosphate deaminase dcd or hi0133 SW:DCD_HAEIN (P44534) (195 aa) fasta scores: E(): 0%2C76.7%25 id in 193 aa;gbkey=CDS;gene=b2065;product=deoxycytidine triphosphate deaminase;protein_id=CAL20171.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1733722	1734141	.	+	.	ID=id3568;Note=Pfam match to entry PF00692 dUTPase%2C dUTPase%2C score 131.10%2C E-value 2e-35;gbkey=misc_feature;gene=b2065;inference=protein motif:PF00692
AL590842.1	EMBL	gene	1734343	1736199	.	+	.	ID=gene1514;Name=YPO1526;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1526
AL590842.1	EMBL	CDS	1734343	1736199	.	+	0	ID=cds1481;Parent=gene1514;Dbxref=InterPro:IPR007844,UniProtKB/TrEMBL:Q7CHR3,NCBI_GP:CAL20172.1;Name=CAL20172.1;Note=Similar to Escherichia coli AsmA protein precursor SW:ASMA_ECOLI (P28249) (617 aa) fasta scores: E(): 46.1%25 id in 625 aa%2C and to Vibrio cholerae AsmA protein vc1039 TR:Q9KT66 (EMBL:AE004185) (703 aa) fasta scores: E(): 8.1e-13%2C 23.5%25 id in 714 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004185;product=putative exported protein;protein_id=CAL20172.1;transl_table=11
AL590842.1	EMBL	gene	1736344	1737930	.	-	.	ID=gene1515;Name=YPO1527;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1527
AL590842.1	EMBL	CDS	1736344	1737930	.	-	0	ID=cds1482;Parent=gene1515;Dbxref=GOA:Q74VA0,InterPro:IPR000644,InterPro:IPR005170,InterPro:IPR005496,InterPro:IPR016166,InterPro:IPR016169,UniProtKB/TrEMBL:Q74VA0,NCBI_GP:CAL20173.1;Name=CAL20173.1;Note=Similar to Escherichia coli hypothetical 59.5 kDa protein in wza-asmA intergenic region SW:YEGH_ECOLI (P76389) (527 aa) fasta scores: E(): 0%2C 72.0%25 id in 529 aa%2Cand to Pseudomonas aeruginosa TR:AAG04720 (Q9I413) (515 aa) fasta scores: E(): 0%2C 54.4%25 id in 515 aa. Similar to YPO1759 (44.8%25 identity in 471 aa overlap);gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL20173.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1736659	1736820	.	-	.	ID=id3569;Note=Pfam match to entry PF00571 CBS%2C CBS domain%2C score 27.60%2C E-value 0.00029;gbkey=misc_feature;inference=protein motif:PF00571
AL590842.1	EMBL	sequence_feature	1736842	1737009	.	-	.	ID=id3570;Note=Pfam match to entry PF00571 CBS%2C CBS domain%2C score 23.40%2C E-value 0.0054;gbkey=misc_feature;inference=protein motif:PF00571
AL590842.1	EMBL	sequence_feature	1737310	1737375	.	-	.	ID=id3571;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1737415	1737480	.	-	.	ID=id3572;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1737496	1737561	.	-	.	ID=id3573;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1737625	1737675	.	-	.	ID=id3574;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1737721	1737786	.	-	.	ID=id3575;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1737826	1737891	.	-	.	ID=id3576;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1738372	1739151	.	+	.	ID=gene1516;Name=YPO1528;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1528
AL590842.1	EMBL	CDS	1738372	1739151	.	+	0	ID=cds1483;Parent=gene1516;Dbxref=GOA:Q7CHR4,InterPro:IPR008090,InterPro:IPR022770,InterPro:IPR024726,UniProtKB/TrEMBL:Q7CHR4,NCBI_GP:CAL20174.1;Name=CAL20174.1;Note=Similar to Escherichia coli ferric iron reductase protein FhuF SW:FHUF_ECOLI (P39405) (262 aa) fasta scores: E(): 8.4e-33%2C 35.0%25 id in 246 aa;gbkey=CDS;product=putative ferric iron reductase;protein_id=CAL20174.1;transl_table=11
AL590842.1	EMBL	gene	1739303	1740850	.	+	.	ID=gene1517;Name=YPO1529;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1529
AL590842.1	EMBL	CDS	1739303	1740850	.	+	0	ID=cds1484;Parent=gene1517;Dbxref=GOA:Q7CHR5,InterPro:IPR002129,InterPro:IPR010977,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q7CHR5,NCBI_GP:CAL20175.1;Name=CAL20175.1;Note=Similar to Enterobacter aerogenes L-2%2C4-diaminobutyrate decarboxylase ddC TR:Q9S0P8 (EMBL:AB032468) (490 aa) fasta scores: E(): 0%2C 39.3%25 id in 468 aa%2C and to Acinetobacter baumannii L-2%2C4-diaminobutyrate decarboxylase ddC SW:DDC_ACIBA (Q43908) (510 aa) fasta scores: E(): 0%2C 38.3%25 id in 431 aa;gbkey=CDS;inference=similar to sequence:INSDC:AB032468;product=putative decarboxylase;protein_id=CAL20175.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1739699	1740619	.	+	.	ID=id3577;Note=Pfam match to entry PF00282 pyridoxal_deC%2CPyridoxal-dependent decarboxylase conserved domain%2C score 165.20%2C E-value 2.7e-47;gbkey=misc_feature;inference=protein motif:PF00282
AL590842.1	EMBL	gene	1740885	1742183	.	+	.	ID=gene1518;Name=alcA;gbkey=Gene;gene=alcA;gene_biotype=protein_coding;locus_tag=YPO1530
AL590842.1	EMBL	CDS	1740885	1742183	.	+	0	ID=cds1485;Parent=gene1518;Dbxref=InterPro:IPR025700,UniProtKB/TrEMBL:Q3V8F6,NCBI_GP:CAL20176.1;Name=CAL20176.1;Note=Similar to Bordetella bronchiseptica alcaligin biosynthesis enzyme SW:ALCA_BORBR (Q44740) (461 aa) fasta scores: E(): 0%2C 49.6%25 id in 425 aa%2C and to Streptomyces coelicolor putative monooxygenase Scc105.14 TR:Q9L071 (EMBL:AL163641) (413 aa) fasta scores: E(): 0%2C 53.7%25 id in 419 aa;gbkey=CDS;gene=alcA;inference=similar to sequence:INSDC:AL163641;product=putative siderophore biosynthetic enzyme;protein_id=CAL20176.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1740912	1740944	.	+	.	ID=id3578;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=alcA;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	1742180	1742761	.	+	.	ID=gene1519;Name=alcB;gbkey=Gene;gene=alcB;gene_biotype=protein_coding;locus_tag=YPO1531
AL590842.1	EMBL	CDS	1742180	1742761	.	+	0	ID=cds1486;Parent=gene1519;Dbxref=InterPro:IPR016181,InterPro:IPR019432,UniProtKB/TrEMBL:Q3V8F7,NCBI_GP:CAL20177.1;Name=CAL20177.1;Note=Similar to Bordetella bronchiseptica AlcB alcB TR:P94254 (EMBL:U61153) (201 aa) fasta scores: E(): 2e-27%2C43.7%25 id in 174 aa%2C and to Streptomyces coelicolor putative acetyltranferase scc105.15 TR:Q9L070 (EMBL:AL163641) (184 aa) fasta scores: E(): 3e-23%2C 39.5%25 id in 172 aa;gbkey=CDS;gene=alcB;inference=similar to sequence:INSDC:U61153;product=putative siderophore biosynthetic enzyme;protein_id=CAL20177.1;transl_table=11
AL590842.1	EMBL	gene	1742758	1744602	.	+	.	ID=gene1520;Name=YPO1532;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1532
AL590842.1	EMBL	CDS	1742758	1744602	.	+	0	ID=cds1487;Parent=gene1520;Dbxref=GOA:Q0WGP0,InterPro:IPR007310,InterPro:IPR022770,UniProtKB/TrEMBL:Q0WGP0,NCBI_GP:CAL20178.1;Name=CAL20178.1;Note=Similar to Bordetella bronchiseptica AlcC TR:P94255 (EMBL:U61153) (618 aa) fasta scores: E(): 0%2C 53.5%25 id in 608 aa%2C and to Streptomyces coelicolor hypothetical 66.6 kDa protein Scc105.16 TR:Q9L069 (EMBL:AL163641) (595 aa) fasta scores: E(): 0%2C 49.4%25 id in 589 aa. Similar to YPO1538 (46.8%25 identity in 596 aa overlap).;gbkey=CDS;inference=similar to sequence:INSDC:U61153;product=putative siderophore biosynthetic enzyme;protein_id=CAL20178.1;transl_table=11
AL590842.1	EMBL	gene	1744711	1745559	.	-	.	ID=gene1521;Name=YPO1533;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1533
AL590842.1	EMBL	CDS	1744711	1745559	.	-	0	ID=cds1488;Parent=gene1521;Dbxref=GOA:Q7CHR6,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CHR6,NCBI_GP:CAL20179.1;Name=CAL20179.1;Note=Similar to Vibrio cholerae ferric vibriobactin ABC transporter%2C ATP-binding protein vc0779 TR:Q9KTV8 (EMBL:AE004163) (279 aa) fasta scores: E(): 0%2C 55.9%25 id in 263 aa%2C and to Streptomyces coelicolor putative iron-siderophore uptake system ATP-binding component sci51.25C TR:Q9S215 (EMBL:AL109848) (301 aa) fasta scores: E(): 0%2C 57.2%25 id in 264 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL109848;product=putative iron-siderophore transport system%2CATP-binding component;protein_id=CAL20179.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1744849	1745409	.	-	.	ID=id3579;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 183.50%2C E-value 3.5e-51;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1745032	1745076	.	-	.	ID=id3580;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	1745365	1745388	.	-	.	ID=id3581;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1745556	1746596	.	-	.	ID=gene1522;Name=YPO1534;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1534
AL590842.1	EMBL	CDS	1745556	1746596	.	-	0	ID=cds1489;Parent=gene1522;Dbxref=GOA:Q7CHR7,InterPro:IPR000522,InterPro:IPR029022,UniProtKB/TrEMBL:Q7CHR7,NCBI_GP:CAL20180.1;Name=CAL20180.1;Note=Similar to Vibrio cholerae cytoplasmic membrane permease ViuG or vc0778 TR:Q9RCF4 (EMBL:U52150) (358 aa) fasta scores: E(): 8.1e-32%2C 36.5%25 id in 329 aa%2C and to Yersinia enterocolitica FepG TR:Q9X3S2 (EMBL:AF082879) (347 aa) fasta scores: E(): 2.5e-31%2C 37.0%25 id in 343 aa;gbkey=CDS;inference=similar to sequence:INSDC:U52150;product=putative iron-siderophore transport system%2Cmembrane permease component;protein_id=CAL20180.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1745571	1745636	.	-	.	ID=id3582;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1745577	1746476	.	-	.	ID=id3583;Note=Pfam match to entry PF01032 FecCD_family%2C FecCD transport family%2C score 222.40%2C E-value 6.6e-63;gbkey=misc_feature;inference=protein motif:PF01032
AL590842.1	EMBL	sequence_feature	1745667	1745732	.	-	.	ID=id3584;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1745769	1745834	.	-	.	ID=id3585;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1746045	1746110	.	-	.	ID=id3586;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1746126	1746191	.	-	.	ID=id3587;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1746204	1746269	.	-	.	ID=id3588;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1746309	1746374	.	-	.	ID=id3589;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1746456	1746521	.	-	.	ID=id3590;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1746583	1747623	.	-	.	ID=gene1523;Name=YPO1535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1535
AL590842.1	EMBL	CDS	1746583	1747623	.	-	0	ID=cds1490;Parent=gene1523;Dbxref=GOA:Q7CHR8,InterPro:IPR000522,InterPro:IPR029022,UniProtKB/TrEMBL:Q7CHR8,NCBI_GP:CAL20181.1;Name=CAL20181.1;Note=Similar to Escherichia coli ferric enterobactin transport system permease protein FepD fepD SW:FEPD_ECOLI (P23876) (334 aa) fasta scores: E(): 0%2C 42.0%25 id in 331 aa%2Cand to Streptomyces coelicolor putative iron-siderophore uptake system transmembrane component sci51.27C TR:Q9S213 (EMBL:AL109848) (348 aa) fasta scores: E(): 0%2C 43.8%25 id in 333 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL109848;product=putative iron-siderophore transport system%2Ctransmembrane component;protein_id=CAL20181.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1746613	1747521	.	-	.	ID=id3591;Note=Pfam match to entry PF01032 FecCD_family%2C FecCD transport family%2C score 272.10%2C E-value 7e-78;gbkey=misc_feature;inference=protein motif:PF01032
AL590842.1	EMBL	sequence_feature	1746619	1746672	.	-	.	ID=id3592;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1746694	1746759	.	-	.	ID=id3593;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1746805	1746870	.	-	.	ID=id3594;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1746934	1746999	.	-	.	ID=id3595;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1747090	1747155	.	-	.	ID=id3596;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1747177	1747233	.	-	.	ID=id3597;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1747246	1747311	.	-	.	ID=id3598;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1747351	1747416	.	-	.	ID=id3599;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1747620	1748699	.	-	.	ID=gene1524;Name=YPO1536;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1536
AL590842.1	EMBL	CDS	1747620	1748699	.	-	0	ID=cds1491;Parent=gene1524;Dbxref=InterPro:IPR002491,UniProtKB/TrEMBL:Q0WGN6,NCBI_GP:CAL20182.1;Name=CAL20182.1;Note=Similar to Corynebacterium diphtheriae dtxr/iron-regulated lipoprotein precursor irp1 TR:Q46023 (EMBL:U02617) (355 aa) fasta scores: E(): 1.2e-26%2C 29.8%25 id in 362 aa%2C and to Escherichia coli ferrienterobactin-binding periplasmic protein precursor fepB SW:FEPB_ECOLI (P14609) (318 aa) fasta scores: E(): 6.6e-08%2C 26.3%25 id in 278 aa;gbkey=CDS;inference=similar to sequence:INSDC:U02617;product=putative iron-siderophore transport system%2Cperiplasmic binding protein;protein_id=CAL20182.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1747740	1748495	.	-	.	ID=id3600;Note=Pfam match to entry PF01497 Peripla_BP_2%2CPeriplasmic binding protein%2C score 76.90%2C E-value 4.2e-19;gbkey=misc_feature;inference=protein motif:PF01497
AL590842.1	EMBL	gene	1748789	1751050	.	-	.	ID=gene1525;Name=YPO1537;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1537
AL590842.1	EMBL	CDS	1748789	1751050	.	-	0	ID=cds1492;Parent=gene1525;Dbxref=GOA:Q7CHR9,InterPro:IPR000531,InterPro:IPR010105,InterPro:IPR010917,InterPro:IPR012910,UniProtKB/TrEMBL:Q7CHR9,NCBI_GP:CAL20183.1;Name=CAL20183.1;Note=Similar to Bordetella pertussis ferric alcaligin siderophore receptor FauA TR:Q9X6A5 (EMBL:AF135154) (734 aa) fasta scores: E(): 0%2C 38.2%25 id in 733 aa%2C and to Escherichia coli FhuE receptor precursor SW:FHUE_ECOLI (P16869) (729 aa) fasta scores: E(): 0%2C 37.0%25 id in 695 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF135154;product=putative iron-siderophore receptor;protein_id=CAL20183.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1748792	1749124	.	-	.	ID=id3601;Note=Pfam match to entry PF00593 TonB_boxC%2C TonB dependent receptor C-terminal region%2C score 63.70%2C E-value 2.4e-16;gbkey=misc_feature;inference=protein motif:PF00593
AL590842.1	EMBL	sequence_feature	1750940	1750972	.	-	.	ID=id3602;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	1751263	1753077	.	-	.	ID=gene1526;Name=YPO1538;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1538
AL590842.1	EMBL	CDS	1751263	1753077	.	-	0	ID=cds1493;Parent=gene1526;Dbxref=GOA:Q3V8E2,InterPro:IPR007310,InterPro:IPR022770,UniProtKB/TrEMBL:Q3V8E2,NCBI_GP:CAL20184.1;Name=CAL20184.1;Note=Similar to Bordetella bronchiseptica siderophore biosynthetic enzyme AlcC TR:P94255 (EMBL:U61153) (618 aa) fasta scores: E(): 0%2C 47.0%25 id in 594 aa%2C and to Streptomyces coelicolor hypothetical 66.6 kDa protein Scc105.16 TR:Q9L069 (EMBL:AL163641) (595 aa) fasta scores: E(): 0%2C 46.3%25 id in 590 aa. Similar to YPO1532 (46.8%25 identity in 596 aa overlap).;gbkey=CDS;inference=similar to sequence:INSDC:U61153;product=putative siderophore biosynthetic enzyme;protein_id=CAL20184.1;transl_table=11
AL590842.1	EMBL	gene	1754023	1754913	.	+	.	ID=gene1527;Name=galU;gbkey=Gene;gene=galU;gene_biotype=protein_coding;locus_tag=YPO1539
AL590842.1	EMBL	CDS	1754023	1754913	.	+	0	ID=cds1494;Parent=gene1527;Dbxref=GOA:Q7CHS0,InterPro:IPR005771,InterPro:IPR005835,InterPro:IPR029044,UniProtKB/TrEMBL:Q7CHS0,NCBI_GP:CAL20185.1;Name=CAL20185.1;Note=Similar to Escherichia coli UTP-glucose-1-phosphate uridylyltransferase SW:GALU_ECOLI (P25520) (301 aa) fasta scores: E(): 0%2C 73.5%25 id in 294 aa%2C and to Haemophilus influenzae UTP-glucose-1-phosphate uridylyltransferase GalU or hi0812 SW:GALU_HAEIN (P44878) (295 aa) fasta scores: E(): 0%2C 71.6%25 id in 289 aa. This CDS (GalU) is similar (64.2%25 in 293 aa overlap) to the adjacent CDS%2C YPO1540 (GalF);gbkey=CDS;gene=galU;product=UTP-glucose-1-phosphate uridylyltransferase;protein_id=CAL20185.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1754035	1754871	.	+	.	ID=id3603;Note=Pfam match to entry PF00483 NTP_transferase%2CNucleotidyl transferase%2C score 9.70%2C E-value 2.5e-08;gbkey=misc_feature;gene=galU;inference=protein motif:PF00483
AL590842.1	EMBL	sequence_feature	1754779	1754802	.	+	.	ID=id3604;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=galU;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1754997	1755890	.	+	.	ID=gene1528;Name=galF;gbkey=Gene;gene=galF;gene_biotype=protein_coding;locus_tag=YPO1540
AL590842.1	EMBL	CDS	1754997	1755890	.	+	0	ID=cds1495;Parent=gene1528;Dbxref=GOA:Q7CHS1,InterPro:IPR005771,InterPro:IPR005835,InterPro:IPR029044,UniProtKB/TrEMBL:Q7CHS1,NCBI_GP:CAL20186.1;Name=CAL20186.1;Note=Similar to Escherichia coli UTP-glucose-1-phosphate uridylyltransferase SW:GALF_ECOLI (P78083) (297 aa) fasta scores: E(): 0%2C 65.3%25 id in 297 aa%2C and to Klebsiella pneumoniae UTP-glucose-1-phosphate uridylyltransferase GalF SW:GALF_KLEPN (Q48447) (298 aa) fasta scores: E(): 0%2C 64.3%25 id in 297 aa. This CDS (GalF) is similar (64.2%25 in 293 aa overlap) to the adjacent CDS YPO1539 (GalU). Both GalU and GalF have been designated UTP-glucose-1-phosphate uridylyltransferase. However%2C it has been proposed that GalF is a non-catalytic subunit of the UDP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose%2C Mol Microbiol 1996 Dec%3B22(5):827-40;gbkey=CDS;gene=galF;product=UTP-glucose-1-phosphate uridylyltransferase;protein_id=CAL20186.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1755009	1755848	.	+	.	ID=id3605;Note=Pfam match to entry PF00483 NTP_transferase%2CNucleotidyl transferase%2C score -5.30%2C E-value 2.5e-07;gbkey=misc_feature;gene=galF;inference=protein motif:PF00483
AL590842.1	EMBL	sequence_feature	1755756	1755779	.	+	.	ID=id3606;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=galF;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1756276	1757685	.	+	.	ID=gene1529;Name=gnd;gbkey=Gene;gene=gnd;gene_biotype=protein_coding;locus_tag=YPO1541
AL590842.1	EMBL	CDS	1756276	1757685	.	+	0	ID=cds1496;Parent=gene1529;Dbxref=GOA:Q0WGN1,InterPro:IPR006113,InterPro:IPR006114,InterPro:IPR006115,InterPro:IPR006184,InterPro:IPR008927,InterPro:IPR012284,InterPro:IPR013328,InterPro:IPR016040,UniProtKB/TrEMBL:Q0WGN1,NCBI_GP:CAL20187.1;Name=CAL20187.1;Note=Similar to Escherichia coli 6-phosphogluconate dehydrogenase%2C decarboxylating Gnd SW:6PGD_ECOLI (P00350) (468 aa) fasta scores: E(): 0%2C 87.6%25 id in 468 aa%2C and to Salmonella typhimurium 6-phosphogluconate dehydrogenase%2Cdecarboxylating Gnd SW:6PGD_SALTY (P14062) (468 aa) fasta scores: E(): 0%2C 87.4%25 id in 468 aa;gbkey=CDS;gene=gnd;product=6-phosphogluconate dehydrogenase%2Cdecarboxylating;protein_id=CAL20187.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1756309	1757643	.	+	.	ID=id3607;Note=Pfam match to entry PF00393 6PGD%2C 6-phosphogluconate dehydrogenases%2C score 1144.50%2C E-value 0;gbkey=misc_feature;gene=gnd;inference=protein motif:PF00393
AL590842.1	EMBL	sequence_feature	1757032	1757070	.	+	.	ID=id3608;Note=PS00461 6-phosphogluconate dehydrogenase signature.;gbkey=misc_feature;gene=gnd;inference=protein motif:ProSite:PS00461
AL590842.1	EMBL	gene	1757885	1758499	.	-	.	ID=gene1530;Name=hisI;gbkey=Gene;gene=hisI;gene_biotype=protein_coding;gene_synonym=hisIE;locus_tag=YPO1542
AL590842.1	EMBL	CDS	1757885	1758499	.	-	0	ID=cds1497;Parent=gene1530;Dbxref=GOA:Q8ZFY1,InterPro:IPR002496,InterPro:IPR008179,InterPro:IPR021130,InterPro:IPR023019,NCBI_GP:CAL20188.1;Name=CAL20188.1;Note=Similar to Escherichia coli histidine biosynthesis bifunctional protein HisIE [includes: phosphoribosyl-AMP cyclohydrolase SW:HIS2_ECOLI (P06989) (203 aa) fasta scores: E(): 0%2C 79.8%25 id in 203 aa%2C and to Salmonella typhimurium histidine biosynthesis bifunctional protein HisIE [includes: phosphoribosyl-AMP cyclohydrolase SW:HIS2_SALTY (P10367) (203 aa) fasta scores: E(): 0%2C 79.3%25 id in 203 aa;gbkey=CDS;gene=hisI;product=histidine biosynthesis bifunctional protein [includes: phosphoribosyl-amp cyclohydrolase;protein_id=CAL20188.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1757891	1758157	.	-	.	ID=id3609;Note=Pfam match to entry PF01503 PRA-PH%2CPhosphoribosyl-ATP pyrophosphohydrolase%2C score 159.60%2CE-value 5.5e-44;gbkey=misc_feature;gene=hisI;inference=protein motif:PF01503
AL590842.1	EMBL	sequence_feature	1758170	1758403	.	-	.	ID=id3610;Note=Pfam match to entry PF01502 PRA-CH%2CPhosphoribosyl-AMP cyclohydrolase%2C score 153.10%2C E-value 4.8e-42;gbkey=misc_feature;gene=hisI;inference=protein motif:PF01502
AL590842.1	EMBL	gene	1758493	1759269	.	-	.	ID=gene1531;Name=hisF;gbkey=Gene;gene=hisF;gene_biotype=protein_coding;locus_tag=YPO1543
AL590842.1	EMBL	CDS	1758493	1759269	.	-	0	ID=cds1498;Parent=gene1531;Dbxref=GOA:Q8ZFY0,InterPro:IPR004651,InterPro:IPR006062,InterPro:IPR011060,InterPro:IPR013785,NCBI_GP:CAL20189.1;Name=CAL20189.1;Note=Similar to Escherichia coli histidine biosynthesis protein HisF SW:HIS6_ECOLI (P10373) (258 aa) fasta scores: E(): 0%2C 86.0%25 id in 258 aa%2C and to Klebsiella pneumoniae HisF protein SW:HIS6_KLEPN (P45603) (258 aa) fasta scores: E(): 0%2C 85.7%25 id in 258 aa;gbkey=CDS;gene=hisF;product=histidine biosynthesic protein (cyclase);protein_id=CAL20189.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1758526	1759236	.	-	.	ID=id3611;Note=Pfam match to entry PF00977 His_biosynth%2C Histidine biosynthesis protein%2C score 419.30%2C E-value 3.5e-122;gbkey=misc_feature;gene=hisF;inference=protein motif:PF00977
AL590842.1	EMBL	gene	1759251	1759988	.	-	.	ID=gene1532;Name=hisA;gbkey=Gene;gene=hisA;gene_biotype=protein_coding;locus_tag=YPO1544
AL590842.1	EMBL	CDS	1759251	1759988	.	-	0	ID=cds1499;Parent=gene1532;Dbxref=GOA:Q8ZFX9,InterPro:IPR006062,InterPro:IPR006063,InterPro:IPR011060,InterPro:IPR013785,InterPro:IPR023016,NCBI_GP:CAL20190.1;Name=CAL20190.1;Note=Similar to Escherichia coli phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA SW:HIS4_ECOLI (P10371) (245 aa) fasta scores: E(): 0%2C 79.5%25 id in 244 aa%2C and to Salmonella typhimurium phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA SW:HIS4_SALTY (P10372) (246 aa) fasta scores: E(): 0%2C 76.0%25 id in 246 aa;gbkey=CDS;gene=hisA;product=phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase;protein_id=CAL20190.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1759263	1759985	.	-	.	ID=id3612;Note=Pfam match to entry PF00977 His_biosynth%2C Histidine biosynthesis protein%2C score 175.50%2C E-value 8.7e-49;gbkey=misc_feature;gene=hisA;inference=protein motif:PF00977
AL590842.1	EMBL	gene	1759994	1760584	.	-	.	ID=gene1533;Name=hisH;gbkey=Gene;gene=hisH;gene_biotype=protein_coding;locus_tag=YPO1545
AL590842.1	EMBL	CDS	1759994	1760584	.	-	0	ID=cds1500;Parent=gene1533;Dbxref=GOA:Q8ZFX8,InterPro:IPR010139,InterPro:IPR017926,InterPro:IPR029062,NCBI_GP:CAL20191.1;Name=CAL20191.1;Note=Similar to Escherichia coli amidotransferase HisH SW:HIS5_ECOLI (P10375) (196 aa) fasta scores: E(): 0%2C 75.5%25 id in 196 aa%2C and to Salmonella typhimurium amidotransferase HisH SW:HIS5_SALTY (P10376) (194 aa) fasta scores: E(): 0%2C 72.6%25 id in 197 aa;gbkey=CDS;gene=hisH;product=amidotransferase;protein_id=CAL20191.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1759997	1760575	.	-	.	ID=id3613;Note=Pfam match to entry PF00117 GATase%2C Glutamine amidotransferase class-I%2C score 130.90%2C E-value 2.3e-35;gbkey=misc_feature;gene=hisH;inference=protein motif:PF00117
AL590842.1	EMBL	sequence_feature	1760336	1760371	.	-	.	ID=id3614;Note=PS00442 Glutamine amidotransferases class-I active site.;gbkey=misc_feature;gene=hisH;inference=protein motif:ProSite:PS00442
AL590842.1	EMBL	gene	1760584	1761651	.	-	.	ID=gene1534;Name=hisB;gbkey=Gene;gene=hisB;gene_biotype=protein_coding;locus_tag=YPO1546
AL590842.1	EMBL	CDS	1760584	1761651	.	-	0	ID=cds1501;Parent=gene1534;Dbxref=GOA:Q8ZFX7,InterPro:IPR000807,InterPro:IPR005954,InterPro:IPR006543,InterPro:IPR006549,InterPro:IPR013954,InterPro:IPR020565,InterPro:IPR020566,InterPro:IPR020568,InterPro:IPR023214,NCBI_GP:CAL20192.1;Name=CAL20192.1;Note=Similar to Escherichia coli histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase HisB TR:Q9S5G5 (P06987) (355 aa) fasta scores: E(): 0%2C 81.4%25 id in 355 aa%2Cand to Salmonella typhimurium histidine biosynthesis bifunctional protein HisB [includes: histidinol-phosphatase HisB SW:HIS7_SALTY (P10368) (354 aa) fasta scores: E(): 0%2C78.9%25 id in 355 aa;gbkey=CDS;gene=hisB;product=histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase;protein_id=CAL20192.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1760638	1761066	.	-	.	ID=id3615;Note=Pfam match to entry PF00475 IGPD%2CImidazoleglycerol-phosphate dehydratase%2C score 345.00%2CE-value 1.1e-117;gbkey=misc_feature;gene=hisB;inference=protein motif:PF00475
AL590842.1	EMBL	sequence_feature	1760659	1760697	.	-	.	ID=id3616;Note=PS00955 Imidazoleglycerol-phosphate dehydratase signature 2.;gbkey=misc_feature;gene=hisB;inference=protein motif:ProSite:PS00955
AL590842.1	EMBL	sequence_feature	1760935	1760976	.	-	.	ID=id3617;Note=PS00954 Imidazoleglycerol-phosphate dehydratase signature 1.;gbkey=misc_feature;gene=hisB;inference=protein motif:ProSite:PS00954
AL590842.1	EMBL	gene	1761648	1762796	.	-	.	ID=gene1535;Name=hisC;gbkey=Gene;gene=hisC;gene_biotype=protein_coding;locus_tag=YPO1547
AL590842.1	EMBL	CDS	1761648	1762796	.	-	0	ID=cds1502;Parent=gene1535;Dbxref=GOA:Q8ZFX6,InterPro:IPR001917,InterPro:IPR004839,InterPro:IPR005861,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,NCBI_GP:CAL20193.1;Name=CAL20193.1;Note=Similar to Escherichia coli histidinol-phosphate aminotransferase HisC SW:HIS8_ECOLI (P06986) (356 aa) fasta scores: E(): 0%2C 74.3%25 id in 346 aa%2C and to Salmonella typhimurium histidinol-phosphate aminotransferase HisC SW:HIS8_SALTY (P10369) (359 aa) fasta scores: E(): 0%2C 73.5%25 id in 358 aa;gbkey=CDS;gene=hisC;product=histidinol-phosphate aminotransferase;protein_id=CAL20193.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1761789	1762580	.	-	.	ID=id3618;Note=Pfam match to entry PF00222 aminotran_2%2CAminotransferases class-II%2C score 279.10%2C E-value 5.6e-80;gbkey=misc_feature;gene=hisC;inference=protein motif:PF00222
AL590842.1	EMBL	sequence_feature	1762134	1762163	.	-	.	ID=id3619;Note=PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site.;gbkey=misc_feature;gene=hisC;inference=protein motif:ProSite:PS00599
AL590842.1	EMBL	gene	1762799	1764130	.	-	.	ID=gene1536;Name=hisD;gbkey=Gene;gene=hisD;gene_biotype=protein_coding;locus_tag=YPO1548
AL590842.1	EMBL	CDS	1762799	1764130	.	-	0	ID=cds1503;Parent=gene1536;Dbxref=GOA:Q8ZFX5,InterPro:IPR001692,InterPro:IPR012131,InterPro:IPR016161,InterPro:IPR022695,NCBI_GP:CAL20194.1;Name=CAL20194.1;Note=Similar to Escherichia coli histidinol dehydrogenase HisD SW:HISX_ECOLI (P06988) (433 aa) fasta scores: E(): 0%2C75.5%25 id in 429 aa%2C and to Salmonella typhimurium histidinol dehydrogenase HisD SW:HISX_SALTY (P10370) (433 aa) fasta scores: E(): 0%2C 77.2%25 id in 429 aa;gbkey=CDS;gene=hisD;product=histidinol dehydrogenase;protein_id=CAL20194.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1762838	1764073	.	-	.	ID=id3620;Note=Pfam match to entry PF00815 Histidinol_dh%2CHistidinol dehydrogenase%2C score 817.20%2C E-value 5.8e-242;gbkey=misc_feature;gene=hisD;inference=protein motif:PF00815
AL590842.1	EMBL	sequence_feature	1763336	1763434	.	-	.	ID=id3621;Note=PS00611 Histidinol dehydrogenase signature.;gbkey=misc_feature;gene=hisD;inference=protein motif:ProSite:PS00611
AL590842.1	EMBL	gene	1764134	1765033	.	-	.	ID=gene1537;Name=hisG;gbkey=Gene;gene=hisG;gene_biotype=protein_coding;locus_tag=YPO1549
AL590842.1	EMBL	CDS	1764134	1765033	.	-	0	ID=cds1504;Parent=gene1537;Dbxref=GOA:Q8ZFX4,InterPro:IPR001348,InterPro:IPR011322,InterPro:IPR013115,InterPro:IPR013820,InterPro:IPR015867,InterPro:IPR018198,InterPro:IPR020621,NCBI_GP:CAL20195.1;Name=CAL20195.1;Note=Similar to Escherichia coli ATP phosphoribosyltransferase HisG SW:HIS1_ECOLI (P10366) (299 aa) fasta scores: E(): 0%2C 88.0%25 id in 299 aa%2C and to Salmonella typhimurium ATP phosphoribosyltransferase HisG SW:HIS1_SALTY (P00499) (299 aa) fasta scores: E(): 0%2C 87.3%25 id in 299 aa;gbkey=CDS;gene=hisG;product=ATP phosphoribosyltransferase;protein_id=CAL20195.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1764371	1764877	.	-	.	ID=id3622;Note=Pfam match to entry PF01634 HisG%2C ATP phosphoribosyltransferase%2C score 272.80%2C E-value 4.4e-78;gbkey=misc_feature;gene=hisG;inference=protein motif:PF01634
AL590842.1	EMBL	sequence_feature	1764503	1764568	.	-	.	ID=id3623;Note=PS01316 ATP phosphoribosyltransferase signature.;gbkey=misc_feature;gene=hisG;inference=protein motif:ProSite:PS01316
AL590842.1	EMBL	gene	1765123	1765347	.	+	.	ID=gene1538;Name=YPO1550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1550
AL590842.1	EMBL	CDS	1765123	1765347	.	+	0	ID=cds1505;Parent=gene1538;Dbxref=UniProtKB/TrEMBL:Q7CHS2,NCBI_GP:CAL20196.1;Name=CAL20196.1;Note=Weakly similar to Vibrio cholerae hypothetical protein VC2263 TR:Q9KPU9 (EMBL:AE004298) (32 aa) fasta scores: E():4.1%2C 47.1%25 id in 34 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004298;product=hypothetical protein;protein_id=CAL20196.1;transl_table=11
AL590842.1	EMBL	gene	1765739	1766566	.	+	.	ID=gene1539;Name=YPO1551;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1551
AL590842.1	EMBL	CDS	1765739	1766566	.	+	0	ID=cds1506;Parent=gene1539;Dbxref=InterPro:IPR016040,UniProtKB/TrEMBL:Q7CHS3,NCBI_GP:CAL20197.1;Name=CAL20197.1;Note=Similar to Escherichia coli hypothetical protein YeeZ SW:YEEZ_ECOLI (P76370) (274 aa) fasta scores: E(): 0%2C65.7%25 id in 274 aa%2C and to Deinococcus radiodurans conserved hypothetical protein DR0832 TR:Q9RW37 (EMBL:AE001937) (290 aa) fasta scores: E(): 4.4e-31%2C 40.4%25 id in 267 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE001937;product=putative exported protein;protein_id=CAL20197.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1766246	1766269	.	+	.	ID=id3624;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1766721	1767155	.	-	.	ID=gene1540;Name=YPO1552;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1552
AL590842.1	EMBL	CDS	1766721	1767155	.	-	0	ID=cds1507;Parent=gene1540;Dbxref=UniProtKB/TrEMBL:Q74V87,NCBI_GP:CAL20198.1;Name=CAL20198.1;Note=Doubtful CDS with no significant database hits. The N-terminal region is similar to a repeat region which is found scattered throughout the genome;gbkey=CDS;product=putative exported protein;protein_id=CAL20198.1;transl_table=11
AL590842.1	EMBL	gene	1767400	1768395	.	-	.	ID=gene1541;Name=YPO1553;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1553
AL590842.1	EMBL	CDS	1767400	1768395	.	-	0	ID=cds1508;Parent=gene1541;Dbxref=GOA:Q7CHS4,InterPro:IPR001851,UniProtKB/TrEMBL:Q7CHS4,NCBI_GP:CAL20199.1;Name=CAL20199.1;Note=Similar to Escherichia coli ribose transport system permease protein RbsC SW:RBSC_ECOLI (P04984) (321 aa) fasta scores: E(): 4.1e-27%2C 35.9%25 id in 309 aa%2C and to Bacillus subtilis membrane transport protein RbsC TR:P96731 (EMBL:Z92953) (322 aa) fasta scores: E(): 1.5e-30%2C 37.2%25 id in 309 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z92953;product=ribose transport system%2C permease protein;protein_id=CAL20199.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1767412	1767477	.	-	.	ID=id3625;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1767490	1767540	.	-	.	ID=id3626;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1767562	1767627	.	-	.	ID=id3627;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1767640	1767705	.	-	.	ID=id3628;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1767793	1767858	.	-	.	ID=id3629;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1768015	1768080	.	-	.	ID=id3630;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1768096	1768161	.	-	.	ID=id3631;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1768177	1768242	.	-	.	ID=id3632;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1768279	1768335	.	-	.	ID=id3633;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	pseudogene	1768392	1769932	.	-	.	ID=gene1542;Name=YPO1554;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO1554;pseudo=true
AL590842.1	EMBL	CDS	1768392	1769932	.	-	0	ID=cds1509;Parent=gene1542;Note=Similar to Bacillus subtilis ribose transport ATP-binding protein RbsA SW:RBSA_BACSU (P36947) (493 aa) fasta scores: E(): 0%2C 35.9%25 id in 502 aa%2C and to Escherichia coli O157:H7 putative ATP-binding protein of ribose ABC transport system Z5691 TR:AAG59288 (EMBL:AE005642) (517 aa) fasta scores: E(): 0%2C 36.8%25 id in 505 aa. There is a deletion and subsequent frameshift following codon 282. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=similar to sequence:INSDC:AE005642;product=sugar transport ATP-binding protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	1768473	1769003	.	-	.	ID=id3634;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 37.50%2C E-value 2.8e-08;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1768656	1768700	.	-	.	ID=id3635;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	1769267	1769833	.	-	.	ID=id3636;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 159.40%2C E-value 5.9e-44;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1769789	1769812	.	-	.	ID=id3637;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1770218	1771309	.	+	.	ID=gene1543;Name=YPO1556;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1556
AL590842.1	EMBL	CDS	1770218	1771309	.	+	0	ID=cds1510;Parent=gene1543;Dbxref=GOA:Q74V85,InterPro:IPR001670,InterPro:IPR016205,InterPro:IPR018211,UniProtKB/TrEMBL:Q74V85,NCBI_GP:CAL20201.1;Name=CAL20201.1;Note=Similar to Escherichia coli hypothetical oxidoreductase in cstA-ahpC intergenic region YbdH SW:YBDH_ECOLI (P45579) (362 aa) fasta scores: E(): 0%2C 66.2%25 id in 358 aa%2C and to Escherichia coli glycerol dehydrogenase GldA SW:GLDA_ECOLI (P32665) (367 aa) fasta scores: E(): 5e-29%2C 33.9%25 id in 357 aa;gbkey=CDS;product=putative dehydrogenase;protein_id=CAL20201.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1770482	1770760	.	+	.	ID=id3638;Note=Pfam match to entry PF00465 Fe-ADH%2C Iron-containing alcohol dehydrogenases%2C score 26.10%2C E-value 1.4e-06;gbkey=misc_feature;inference=protein motif:PF00465
AL590842.1	EMBL	sequence_feature	1770671	1770757	.	+	.	ID=id3639;Note=PS00913 Iron-containing alcohol dehydrogenases signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS00913
AL590842.1	EMBL	gene	1771769	1773160	.	+	.	ID=gene1544;Name=yeeF;gbkey=Gene;gene=yeeF;gene_biotype=protein_coding;locus_tag=YPO1557
AL590842.1	EMBL	CDS	1771769	1773160	.	+	0	ID=cds1511;Parent=gene1544;Dbxref=GOA:Q7CHS5,InterPro:IPR002293,UniProtKB/TrEMBL:Q7CHS5,NCBI_GP:CAL20202.1;Name=CAL20202.1;Note=Similar to Escherichia coli proline transport protein YeeF TR:BAA15842 (EMBL:D90839) (454 aa) fasta scores: E(): 0%2C 73.8%25 id in 447 aa%2C and to Escherichia coli lysine-specific permease TR:P77557 (EMBL:D90767) (433 aa) fasta scores: E(): 0%2C 67.7%25 id in 424 aa;gbkey=CDS;gene=yeeF;inference=similar to sequence:INSDC:D90839;product=Amino acid permease;protein_id=CAL20202.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1771832	1773106	.	+	.	ID=id3640;Note=Pfam match to entry PF00324 aa_permeases%2C Amino acid permease%2C score -124.00%2C E-value 5.1e-08;gbkey=misc_feature;gene=yeeF;inference=protein motif:PF00324
AL590842.1	EMBL	sequence_feature	1771844	1771900	.	+	.	ID=id3641;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeeF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1771943	1772011	.	+	.	ID=id3642;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeeF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1772072	1772140	.	+	.	ID=id3643;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeeF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1772183	1772251	.	+	.	ID=id3644;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeeF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1772264	1772332	.	+	.	ID=id3645;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeeF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1772390	1772443	.	+	.	ID=id3646;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeeF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1772504	1772572	.	+	.	ID=id3647;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeeF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1772648	1772716	.	+	.	ID=id3648;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeeF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1772801	1772860	.	+	.	ID=id3649;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeeF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1772873	1772941	.	+	.	ID=id3650;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeeF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1772975	1773034	.	+	.	ID=id3651;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeeF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1773047	1773100	.	+	.	ID=id3652;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeeF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1773897	1775327	.	-	.	ID=gene1545;Name=cpeA;gbkey=Gene;gene=cpeA;gene_biotype=protein_coding;gene_synonym=sbcB,xonA;locus_tag=YPO1558
AL590842.1	EMBL	CDS	1773897	1775327	.	-	0	ID=cds1512;Parent=gene1545;Dbxref=GOA:Q74V83,InterPro:IPR012337,InterPro:IPR013520,InterPro:IPR013620,InterPro:IPR023607,UniProtKB/TrEMBL:Q74V83,NCBI_GP:CAL20203.1;Name=CAL20203.1;Note=Similar to Escherichia coli exodeoxyribonuclease I SW:EX1_ECOLI (P04995) (475 aa) fasta scores: E(): 0%2C 73.1%25 id in 475 aa%2C and to Vibrio cholerae exodeoxyribonuclease I VC1234 TR:Q9KSM2 (EMBL:AE004202) (474 aa) fasta scores: E(): 0%2C 58.7%25 id in 472 aa;gbkey=CDS;gene=cpeA;inference=similar to sequence:INSDC:AE004202;product=exodeoxyribonuclease I;protein_id=CAL20203.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1774737	1775300	.	-	.	ID=id3653;Note=Pfam match to entry PF00929 Exonuclease%2CExonuclease%2C score 84.80%2C E-value 1.8e-21;gbkey=misc_feature;gene=cpeA;inference=protein motif:PF00929
AL590842.1	EMBL	gene	1775590	1776729	.	+	.	ID=gene1546;Name=YPO1559;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1559
AL590842.1	EMBL	CDS	1775590	1776729	.	+	0	ID=cds1513;Parent=gene1546;Dbxref=InterPro:IPR013120,InterPro:IPR016040,UniProtKB/TrEMBL:Q7CHS6,NCBI_GP:CAL20204.1;Name=CAL20204.1;Note=Weakly similar to Pseudomonas aeruginosa hypothetical protein TR:AAG04948 (EMBL:AE004584) (243 aa) fasta scores: E(): 1.9e-32%2C 45.5%25 id in 213 aa%2C and to Anabaena sp polyketide synthase HetM SW:HETM_ANASP (P37693) (506 aa) fasta scores: E(): 6.6e-06%2C 24.0%25 id in 296 aa%2Cand to Myxococcus xanthus saframycin mx1 synthetase A SafA TR:Q50858 (EMBL:U24657) (2605 aa) fasta scores: E(): 0.00015%2C 25.5%25 id in 251 aa;gbkey=CDS;inference=similar to sequence:INSDC:U24657;product=hypothetical protein;protein_id=CAL20204.1;transl_table=11
AL590842.1	EMBL	gene	1777163	1777480	.	+	.	ID=gene1547;Name=YPO1560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1560
AL590842.1	EMBL	CDS	1777163	1777480	.	+	0	ID=cds1514;Parent=gene1547;Dbxref=InterPro:IPR007458,NCBI_GP:CAL20205.1;Name=CAL20205.1;Note=Similar to Escherichia coli hypothetical protein YeeX SW:YEEX_ECOLI (P76367) (109 aa) fasta scores: E(): 1.5e-29%2C 84.2%25 id in 101 aa%2C and to Haemophilus influenzae hypothetical protein HI1168 SW:YEEX_HAEIN (P44117) (114 aa) fasta scores: E(): 2.7e-20%2C 61.6%25 id in 99 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL20205.1;transl_table=11
AL590842.1	EMBL	pseudogene	1779103	1782174	.	-	.	ID=gene1548;Name=YPO1562;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO1562;part=1/2;pseudo=true
AL590842.1	EMBL	pseudogene	1777624	1777770	.	-	.	ID=gene1548;Name=YPO1562;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO1562;part=2/2;pseudo=true
AL590842.1	EMBL	CDS	1779103	1782174	.	-	0	ID=cds1515;Parent=gene1548;Dbxref=PSEUDO:CAL20206.1;Note=CDS is disrupted by the insertion of IS285 element after codon 1024%2C near the C-terminus of the protein. It is not clear whether this insertion affects the function of the protein. The full length CDS is similar to Escherichia coli intimin EaeA TR:AAC38392 (EMBL:M58154) (939 aa) fasta scores: E(): 0%2C 33.7%25 id in 732 aa%2C and to Escherichia coli O157:H7 EDL933 putative adhesin EaeH TR:AAG54632 (EMBL:AE005207) (1417 aa) fasta scores: E(): 0%2C 30.7%25 id in 1111 aa;gbkey=CDS;inference=similar to sequence:INSDC:M58154;product=putative intimin (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	CDS	1777624	1777770	.	-	0	ID=cds1515;Parent=gene1548;Dbxref=PSEUDO:CAL20206.1;Note=CDS is disrupted by the insertion of IS285 element after codon 1024%2C near the C-terminus of the protein. It is not clear whether this insertion affects the function of the protein. The full length CDS is similar to Escherichia coli intimin EaeA TR:AAC38392 (EMBL:M58154) (939 aa) fasta scores: E(): 0%2C 33.7%25 id in 732 aa%2C and to Escherichia coli O157:H7 EDL933 putative adhesin EaeH TR:AAG54632 (EMBL:AE005207) (1417 aa) fasta scores: E(): 0%2C 30.7%25 id in 1111 aa;gbkey=CDS;inference=similar to sequence:INSDC:M58154;product=putative intimin (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	1779841	1780128	.	-	.	ID=id3654;Note=Pfam match to entry PF02369 Big_1%2C %2C score 41.10%2CE-value 2.6e-08;gbkey=misc_feature;inference=protein motif:PF02369
AL590842.1	EMBL	sequence_feature	1780147	1780443	.	-	.	ID=id3655;Note=Pfam match to entry PF02369 Big_1%2C %2C score 34.90%2CE-value 1.8e-06;gbkey=misc_feature;inference=protein motif:PF02369
AL590842.1	EMBL	FLANKING	1777772	1777779	.	+	.	ID=id3656;Note=duplication flanking insertion sequence;gbkey=repeat_region;rpt_type=FLANKING
AL590842.1	EMBL	repeat_region	1777780	1779094	.	+	.	ID=id3657;Note=insertion sequence:IS285;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	1777780	1777808	.	+	.	ID=id3658;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1777851	1779059	.	+	.	ID=gene1549;Name=y1062;gbkey=Gene;gene=y1062;gene_biotype=protein_coding;gene_synonym=ypmt1.80C;locus_tag=YPO1561
AL590842.1	EMBL	CDS	1777851	1779059	.	+	0	ID=cds1516;Parent=gene1549;Dbxref=GOA:O68779,InterPro:IPR001207,UniProtKB/TrEMBL:O68779,NCBI_GP:CAL20207.1;Name=CAL20207.1;Note=Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa.;gbkey=CDS;gene=y1062;inference=similar to sequence:INSDC:AF053947;product=transposase for the IS285 insertion element;protein_id=CAL20207.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1777851	1778987	.	+	.	ID=id3659;Note=Pfam match to entry PF00872 Transpo_mutator%2CTransposase%2C Mutator family%2C score 430.40%2C E-value 1.6e-125;gbkey=misc_feature;gene=y1062;inference=protein motif:PF00872
AL590842.1	EMBL	sequence_feature	1778544	1778618	.	+	.	ID=id3660;Note=PS01007 Transposases%2C Mutator family%2C signature.;gbkey=misc_feature;gene=y1062;inference=protein motif:ProSite:PS01007
AL590842.1	EMBL	INVERTED	1779066	1779094	.	-	.	ID=id3661;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	sequence_feature	1779095	1779102	.	+	.	ID=id3662;Note=Sequence duplication around IS insertion;gbkey=misc_feature
AL590842.1	EMBL	gene	1783103	1784503	.	+	.	ID=gene1550;Name=YPO1563;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1563
AL590842.1	EMBL	CDS	1783103	1784503	.	+	0	ID=cds1517;Parent=gene1550;Dbxref=GOA:Q7CHS8,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q7CHS8,NCBI_GP:CAL20208.1;Name=CAL20208.1;Note=Similar to Agrobacterium vitis putative tartrate transporter TtuB SW:TUB3_AGRVI (P70786) (449 aa) fasta scores: E(): 0%2C 38.1%25 id in 417 aa%2C and to Burkholderia cepacia phthalate transporter OphD TR:Q9RPP3 (EMBL:AF152094) (448 aa) fasta scores: E(): 0%2C 32.3%25 id in 412 aa%2C and to Escherichia coli hypothetical 46.3 kDa protein in glpc-ais intergenic region YfaV SW:YFAV_ECOLI (P76470) (429 aa) fasta scores: E(): 0%2C 54.4%25 id in 412 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF152094;product=putative transmembrane transporter;protein_id=CAL20208.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1783256	1783324	.	+	.	ID=id3663;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1783367	1783435	.	+	.	ID=id3664;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1783454	1783522	.	+	.	ID=id3665;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1783535	1783603	.	+	.	ID=id3666;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1783640	1783708	.	+	.	ID=id3667;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1783736	1783804	.	+	.	ID=id3668;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1783934	1784002	.	+	.	ID=id3669;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1784045	1784104	.	+	.	ID=id3670;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1784141	1784197	.	+	.	ID=id3671;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1784207	1784275	.	+	.	ID=id3672;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1784300	1784368	.	+	.	ID=id3673;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1784411	1784479	.	+	.	ID=id3674;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1784512	1784937	.	-	.	ID=gene1551;Name=YPO1564;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1564
AL590842.1	EMBL	CDS	1784512	1784937	.	-	0	ID=cds1518;Parent=gene1551;Dbxref=InterPro:IPR007263,UniProtKB/TrEMBL:Q0WGL1,NCBI_GP:CAL20209.1;Name=CAL20209.1;Note=Similar to Bacillus subtilis hypothetical 15.7 kDa protein in pbpD-comA intergenic region YuxK SW:YUXK_BACSU (P40761) (137 aa) fasta scores: E(): 3.2e-19%2C 39.8%25 id in 128 aa%2C and to Xylella fastidiosa hypothetical protein Xf0941 TR:Q9PET7 (EMBL:AE003933) (152 aa) fasta scores: E(): 5e-18%2C 40.6%25 id in 128 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE003933;product=putative membrane protein;protein_id=CAL20209.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1784842	1784892	.	-	.	ID=id3675;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1785362	1786102	.	+	.	ID=gene1552;Name=YPO1565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1565
AL590842.1	EMBL	CDS	1785362	1786102	.	+	0	ID=cds1519;Parent=gene1552;Dbxref=GOA:Q7CHS9,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:Q7CHS9,NCBI_GP:CAL20210.1;Name=CAL20210.1;Note=Similar to Homo sapiens oxidoreductase UcpA TR:Q9NRX8 (EMBL:AF164790) (245 aa) fasta scores: E(): 0%2C56.1%25 id in 246 aa%2C and to Escherichia coli oxidoreductase UcpA SW:UCPA_ECOLI (P37440) (285 aa) fasta scores: E(): 3.5e-23%2C 41.3%25 id in 252 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF164790;product=putative oxidoreductase;protein_id=CAL20210.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1785377	1785898	.	+	.	ID=id3676;Note=Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase%2C score 201.00%2C E-value 1.8e-56;gbkey=misc_feature;inference=protein motif:PF00106
AL590842.1	EMBL	sequence_feature	1785749	1785835	.	+	.	ID=id3677;Note=PS00061 Short-chain dehydrogenases/reductases family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00061
AL590842.1	EMBL	sequence_feature	1785989	1786081	.	+	.	ID=id3678;Note=Pfam match to entry PF00678 adh_short_C2%2C Short chain dehydrogenase/reductase C-terminus%2C score 46.10%2CE-value 2.1e-11;gbkey=misc_feature;inference=protein motif:PF00678
AL590842.1	EMBL	gene	1786150	1786992	.	+	.	ID=gene1553;Name=YPO1566;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1566
AL590842.1	EMBL	CDS	1786150	1786992	.	+	0	ID=cds1520;Parent=gene1553;Dbxref=GOA:Q7CHT0,InterPro:IPR002529,InterPro:IPR011234,UniProtKB/TrEMBL:Q7CHT0,NCBI_GP:CAL20211.1;Name=CAL20211.1;Note=Similar to many proposed: 2-hydroxyhepta-2%2C4-diene-1%2C 7-dioate isomerase/5-carboxymethyl-2-oxo-hex-3-ene-1%2C7-dioatedecarb oxylase e.g. Rhodobacter capsulatus TR:O68122 (EMBL:AF010496) (280 aa) fasta scores: E(): 0%2C 56.1%25 id in 280 aa%2C and to Streptomyces coelicolor Sce20.24C TR:Q9RDA1 (EMBL:AL136058) (285 aa) fasta scores: E(): 0%2C 53.7%25 id in 285 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL136058;product=putative hydrolase;protein_id=CAL20211.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1786408	1786905	.	+	.	ID=id3679;Note=Pfam match to entry PF01557 FAA_hydrolase%2CFumarylacetoacetate (FAA) hydrolase family%2C score 275.10%2CE-value 8.9e-79;gbkey=misc_feature;inference=protein motif:PF01557
AL590842.1	EMBL	sequence_feature	1787087	1788202	.	+	.	ID=id3680;Note=Pfam match to entry PF01188 MR_MLE%2C Mandelate racemase / muconate lactonizing enzyme family%2C score -31.00%2C E-value 1.3e-06;gbkey=misc_feature;inference=protein motif:PF01188
AL590842.1	EMBL	gene	1787099	1788301	.	+	.	ID=gene1554;Name=YPO1567;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1567
AL590842.1	EMBL	CDS	1787099	1788301	.	+	0	ID=cds1521;Parent=gene1554;Dbxref=GOA:Q0WGK8,InterPro:IPR001354,InterPro:IPR013341,InterPro:IPR013342,InterPro:IPR018110,InterPro:IPR029017,InterPro:IPR029065,UniProtKB/TrEMBL:Q0WGK8,NCBI_GP:CAL20212.1;Name=CAL20212.1;Note=Similar to several racemases from Homo sapiens associated with quorum sensing functions in human cells e.g. RTS beta TR:Q15407 (EMBL:X89602) (416 aa) fasta scores: E(): 0%2C 53.1%25 id in 401 aa%2C and to Homo sapiens RTS alpha TR:AAG29536 (EMBL:AF305057) (361 aa) fasta scores: E(): 0%2C 54.1%25 id in 331 aa;gbkey=CDS;inference=similar to sequence:INSDC:X89602;product=putative racemase;protein_id=CAL20212.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1787753	1787848	.	+	.	ID=id3681;Note=PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00909
AL590842.1	EMBL	gene	1788380	1788553	.	+	.	ID=gene1555;Name=YPO1568;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1568
AL590842.1	EMBL	CDS	1788380	1788553	.	+	0	ID=cds1522;Parent=gene1555;Dbxref=UniProtKB/TrEMBL:Q74V75,NCBI_GP:CAL20213.1;Name=CAL20213.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20213.1;transl_table=11
AL590842.1	EMBL	gene	1788598	1789743	.	+	.	ID=gene1556;Name=lctD;gbkey=Gene;gene=lctD;gene_biotype=protein_coding;gene_synonym=lldD;locus_tag=YPO1569
AL590842.1	EMBL	CDS	1788598	1789743	.	+	0	ID=cds1523;Parent=gene1556;Dbxref=GOA:Q8ZFV8,InterPro:IPR000262,InterPro:IPR008259,InterPro:IPR012133,InterPro:IPR013785,InterPro:IPR020920,NCBI_GP:CAL20214.1;Name=CAL20214.1;Note=Similar to Escherichia coli L-lactate dehydrogenase LldD or LctD SW:LLDD_ECOLI (P33232) (396 aa) fasta scores: E(): 0%2C 83.2%25 id in 375 aa%2C and to Vibrio cholerae L-lactate dehydrogenase Vca0984 TR:Q9KKW6 (EMBL:AE004425) (378 aa) fasta scores: E(): 0%2C 81.6%25 id in 375 aa;gbkey=CDS;gene=lctD;inference=similar to sequence:INSDC:AE004425;product=L-lactate dehydrogenase;protein_id=CAL20214.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1788634	1789728	.	+	.	ID=id3682;Note=Pfam match to entry PF01070 FMN_dh%2C FMN-dependent dehydrogenase%2C score 717.60%2C E-value 5.8e-212;gbkey=misc_feature;gene=lctD;inference=protein motif:PF01070
AL590842.1	EMBL	sequence_feature	1789414	1789434	.	+	.	ID=id3683;Note=PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site.;gbkey=misc_feature;gene=lctD;inference=protein motif:ProSite:PS00557
AL590842.1	EMBL	gene	1789948	1791315	.	-	.	ID=gene1557;Name=argG;gbkey=Gene;gene=argG;gene_biotype=protein_coding;locus_tag=YPO1570
AL590842.1	EMBL	CDS	1789948	1791315	.	-	0	ID=cds1524;Parent=gene1557;Dbxref=GOA:Q8ZFV7,InterPro:IPR001518,InterPro:IPR014729,InterPro:IPR018223,InterPro:IPR023437,InterPro:IPR024073,InterPro:IPR024074,NCBI_GP:CAL20215.1;Name=CAL20215.1;Note=Similar to Escherichia coli argininosuccinate synthase ArgG SW:ASSY_ECOLI (P22767) (446 aa) fasta scores: E(): 0%2C 90.5%25 id in 440 aa%2C and to Neisseria meningitidis argininosuccinate synthase ArgG or Nma0303 TR:Q9JWM1 (EMBL:AL162752) (447 aa) fasta scores: E(): 0%2C 80.7%25 id in 440 aa;gbkey=CDS;gene=argG;inference=similar to sequence:INSDC:AL162752;product=argininosuccinate synthase;protein_id=CAL20215.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1790062	1791273	.	-	.	ID=id3684;Note=Pfam match to entry PF00764 Arginosuc_synth%2CArginosuccinate synthase%2C score 723.90%2C E-value 2.6e-227;gbkey=misc_feature;gene=argG;inference=protein motif:PF00764
AL590842.1	EMBL	sequence_feature	1790896	1790931	.	-	.	ID=id3685;Note=PS00565 Argininosuccinate synthase signature 2.;gbkey=misc_feature;gene=argG;inference=protein motif:ProSite:PS00565
AL590842.1	EMBL	sequence_feature	1791241	1791267	.	-	.	ID=id3686;Note=PS00564 Argininosuccinate synthase signature 1.;gbkey=misc_feature;gene=argG;inference=protein motif:ProSite:PS00564
AL590842.1	EMBL	gene	1791609	1793039	.	+	.	ID=gene1558;Name=yeeO;gbkey=Gene;gene=yeeO;gene_biotype=protein_coding;locus_tag=YPO1571
AL590842.1	EMBL	CDS	1791609	1793039	.	+	0	ID=cds1525;Parent=gene1558;Dbxref=GOA:Q7CHT2,InterPro:IPR002528,UniProtKB/TrEMBL:Q7CHT2,NCBI_GP:CAL20216.1;Name=CAL20216.1;Note=Similar to Escherichia coli hypothetical 60.1 kDa protein in amn-cbl intergenic region YeeO SW:YEEO_ECOLI (P76352) (547 aa) fasta scores: E(): 0%2C 63.6%25 id in 470 aa%2Cand to Bacillus subtilis hypothetical 50.0 kDa protein Yisq or YucE TR:O07940 (EMBL:Y09476) (455 aa) fasta scores: E(): 0%2C 28.5%25 id in 467 aa;gbkey=CDS;gene=yeeO;inference=similar to sequence:INSDC:Y09476;product=putative sugar transporter;protein_id=CAL20216.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1791720	1791788	.	+	.	ID=id3687;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeeO;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1791726	1792217	.	+	.	ID=id3688;Note=Pfam match to entry PF01554 UPF0013%2C Uncharacterized membrane protein family UPF0013%2C score 149.80%2C E-value 4.8e-41;gbkey=misc_feature;gene=yeeO;inference=protein motif:PF01554
AL590842.1	EMBL	sequence_feature	1791846	1791914	.	+	.	ID=id3689;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeeO;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1791951	1792019	.	+	.	ID=id3690;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeeO;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1792062	1792130	.	+	.	ID=id3691;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeeO;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1792098	1792130	.	+	.	ID=id3692;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=yeeO;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	1792167	1792235	.	+	.	ID=id3693;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeeO;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1792263	1792331	.	+	.	ID=id3694;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeeO;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1792350	1792418	.	+	.	ID=id3695;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeeO;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1792416	1792904	.	+	.	ID=id3696;Note=Pfam match to entry PF01554 UPF0013%2C Uncharacterized membrane protein family UPF0013%2C score 129.80%2C E-value 4.9e-35;gbkey=misc_feature;gene=yeeO;inference=protein motif:PF01554
AL590842.1	EMBL	sequence_feature	1792497	1792565	.	+	.	ID=id3697;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeeO;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1792644	1792712	.	+	.	ID=id3698;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeeO;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1792755	1792823	.	+	.	ID=id3699;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeeO;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1792887	1792955	.	+	.	ID=id3700;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeeO;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1793067	1794407	.	-	.	ID=gene1559;Name=YPO1572;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1572
AL590842.1	EMBL	CDS	1793067	1794407	.	-	0	ID=cds1526;Parent=gene1559;Dbxref=GOA:Q7CHT3,InterPro:IPR005829,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q7CHT3,NCBI_GP:CAL20217.1;Name=CAL20217.1;Note=Similar to Yersinia pseudotuberculosis hypothetical 13.4 kDa protein TR:Q9X9F7 (EMBL:AJ236887) (124 aa) fasta scores: E(): 0%2C 100.0%25 id in 124 aa%2C and to Pseudomonas putida benzoate transport protein BenK TR:Q9L7Y1 (EMBL:AF218267) (443 aa) fasta scores: E(): 4.8e-17%2C 25.1%25 id in 442 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ236887;product=putative sugar transporter;protein_id=CAL20217.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1793082	1794335	.	-	.	ID=id3701;Note=Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporter%2C score 0.70%2C E-value 7.6e-07;gbkey=misc_feature;inference=protein motif:PF00083
AL590842.1	EMBL	sequence_feature	1793085	1793150	.	-	.	ID=id3702;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1793181	1793246	.	-	.	ID=id3703;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1793286	1793351	.	-	.	ID=id3704;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1793367	1793432	.	-	.	ID=id3705;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1793454	1793519	.	-	.	ID=id3706;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1793550	1793615	.	-	.	ID=id3707;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1793796	1793861	.	-	.	ID=id3708;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1794072	1794137	.	-	.	ID=id3709;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1794123	1794173	.	-	.	ID=id3710;Note=PS00216 Sugar transport proteins signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS00216
AL590842.1	EMBL	sequence_feature	1794159	1794215	.	-	.	ID=id3711;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1794261	1794326	.	-	.	ID=id3712;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1794443	1795351	.	-	.	ID=gene1560;Name=YPO1573;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1573
AL590842.1	EMBL	CDS	1794443	1795351	.	-	0	ID=cds1527;Parent=gene1560;Dbxref=GOA:Q0WGK2,InterPro:IPR002509,InterPro:IPR011330,UniProtKB/TrEMBL:Q0WGK2,NCBI_GP:CAL20218.1;Name=CAL20218.1;Note=Similar to Yersinia pseudotuberculosis hypothetical 33.7 kDa protein TR:Q9X9F8 (EMBL:AJ236887) (293 aa) fasta scores: E(): 0%2C 99.7%25 id in 293 aa%2C and to Helicobacter pylori conserved hypothetical protein Hp0310 TR:O25080 (EMBL:AE000549) (293 aa) fasta scores: E(): 0%2C 75.3%25 id in 292 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ236887;product=putative polysaccharide deacetylase;protein_id=CAL20218.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1794803	1795249	.	-	.	ID=id3713;Note=Pfam match to entry PF01522 Polysac_deacet%2CPolysaccharide deacetylase%2C score 135.30%2C E-value 1.1e-36;gbkey=misc_feature;inference=protein motif:PF01522
AL590842.1	EMBL	gene	1795901	1796596	.	+	.	ID=gene1561;Name=YPO1574;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1574
AL590842.1	EMBL	CDS	1795901	1796596	.	+	0	ID=cds1528;Parent=gene1561;Dbxref=UniProtKB/TrEMBL:Q7CHT4,NCBI_GP:CAL20219.1;Name=CAL20219.1;Note=Similar to Yersinia pseudotuberculosis hypothetical 26.5 kDa protein TR:Q9X9F9 (EMBL:AJ236887) (231 aa) fasta scores: E(): 0%2C 100.0%25 id in 231 aa%2C and to Plasmodium falciparum dihydropteroate synthetase TR:Q25704 (EMBL:U07706) (706 aa) fasta scores: E(): 0.32%2C 28.0%25 id in 200 aa;gbkey=CDS;inference=similar to sequence:INSDC:U07706;product=putative exported protein;protein_id=CAL20219.1;transl_table=11
AL590842.1	EMBL	gene	1796713	1797225	.	+	.	ID=gene1562;Name=YPO1575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1575
AL590842.1	EMBL	CDS	1796713	1797225	.	+	0	ID=cds1529;Parent=gene1562;Dbxref=InterPro:IPR018636,UniProtKB/TrEMBL:Q74V69,NCBI_GP:CAL20220.1;Name=CAL20220.1;Note=Similar to Escherichia coli hypothetical protein YaiL SW:YAIL_ECOLI (P51024) (179 aa) fasta scores: E(): 0%2C86.5%25 id in 170 aa%2C to Yersinia enterocolitica putative nucleoprotein/polynucleotide-associated enzyme homolog TR:Q9X9H0 (EMBL:AJ132945) (131 aa) fasta scores: E(): 0%2C92.4%25 id in 131 aa%2C to Yersinia pseudotuberculosis hypothetical protein TR:Q9X9G1 (EMBL:AJ236887) (101 aa) fasta scores: E(): 3.3e-30%2C 100.0%25 id in 101 aa%2C and to Yersinia pseudotuberculosis hypothetical protein TR:Q9X9G0 (EMBL:AJ236887) (79 aa) fasta scores: E(): 4.8e-11%2C 98.1%25 id in 52 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ236887;product=conserved hypothetical protein;protein_id=CAL20220.1;transl_table=11
AL590842.1	EMBL	tRNA	1797571	1797646	.	-	.	ID=rna40;Note=tRNA Asn anticodon GTT%2C Cove score 87.13;gbkey=tRNA;product=tRNA-Asn
AL590842.1	EMBL	exon	1797571	1797646	.	-	.	ID=id3714;Parent=rna40;Note=tRNA Asn anticodon GTT%2C Cove score 87.13;gbkey=tRNA;product=tRNA-Asn
AL590842.1	EMBL	gene	1798092	1798721	.	-	.	ID=gene1563;Name=YPO1576;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1576
AL590842.1	EMBL	CDS	1798092	1798721	.	-	0	ID=cds1530;Parent=gene1563;Dbxref=GOA:Q7CHT5,InterPro:IPR000792,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:Q7CHT5,NCBI_GP:CAL20221.1;Name=CAL20221.1;Note=Similar to Escherichia coli transcriptional regulatory protein UhpA SW:UHPA_ECOLI (P10940) (196 aa) fasta scores: E(): 0%2C 48.7%25 id in 197 aa%2C and to Salmonella typhimurium transcriptional regulatory protein UhpA SW:UHPA_SALTY (P27667) (196 aa) fasta scores: E(): 0%2C 48.5%25 id in 198 aa;gbkey=CDS;product=putative GerR-family transcriptional regulatory protein;protein_id=CAL20221.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1798098	1798295	.	-	.	ID=id3715;Note=Pfam match to entry PF00196 GerE%2C Bacterial regulatory proteins%2C luxR family%2C score 84.10%2C E-value 2.9e-21;gbkey=misc_feature;inference=protein motif:PF00196
AL590842.1	EMBL	sequence_feature	1798176	1798241	.	-	.	ID=id3716;Note=Predicted helix-turn-helix motif with score 1225 (+3.36 SD) at aa 112-133%2C sequence ISVKALAEQLSLSHKTVHVHRA;gbkey=misc_feature
AL590842.1	EMBL	gene	1798979	1800271	.	-	.	ID=gene1564;Name=YPO1577;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1577
AL590842.1	EMBL	CDS	1798979	1800271	.	-	0	ID=cds1531;Parent=gene1564;Dbxref=GOA:Q7CHT6,InterPro:IPR004681,InterPro:IPR010656,UniProtKB/TrEMBL:Q7CHT6,NCBI_GP:CAL20222.1;Name=CAL20222.1;Note=Similar to Bacillus halodurans C4-dicarboxylate transport system Bh0703 TR:Q9KEZ6 (EMBL:AP001509) (434 aa) fasta scores: E(): 0%2C 43.6%25 id in 429 aa%2C and to Wolinella succinogenes large integral C4-dicarboxylate membrane transport protein%2C putative DctM TR:Q9ZEJ2 (EMBL:AJ132740) (415 aa) fasta scores: E(): 0%2C 39.0%25 id in 418 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001509;product=putative C4-dicarboxylate transporter%2C large subunit;protein_id=CAL20222.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1799012	1799077	.	-	.	ID=id3717;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1799117	1799182	.	-	.	ID=id3718;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1799213	1799263	.	-	.	ID=id3719;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1799279	1799329	.	-	.	ID=id3720;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1799375	1799440	.	-	.	ID=id3721;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1799399	1799881	.	-	.	ID=id3722;Note=Pfam match to entry PF00597 DedA%2C DedA family%2C score 20.10%2C E-value 0.0029;gbkey=misc_feature;inference=protein motif:PF00597
AL590842.1	EMBL	sequence_feature	1799501	1799551	.	-	.	ID=id3723;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1799564	1799629	.	-	.	ID=id3724;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1799693	1799758	.	-	.	ID=id3725;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1799963	1800028	.	-	.	ID=id3726;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1800050	1800106	.	-	.	ID=id3727;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1800167	1800232	.	-	.	ID=id3728;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1800291	1800797	.	-	.	ID=gene1565;Name=YPO1578;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1578
AL590842.1	EMBL	CDS	1800291	1800797	.	-	0	ID=cds1532;Parent=gene1565;Dbxref=InterPro:IPR007387,UniProtKB/TrEMBL:Q7CHT7,NCBI_GP:CAL20223.1;Name=CAL20223.1;Note=Similar to Wolinella succinogenes small integral c4-dicarboxylate membrane transport protein%2C putative dctQ TR:Q9ZEJ3 (EMBL:AJ132740) (170 aa) fasta scores: E(): 0.00071%2C 31.7%25 id in 101 aa%2C and to Bacillus halodurans c4-dicarboxylate transport system bh2672 TR:Q9K9H5 (EMBL:AP001516) (183 aa) fasta scores: E(): 2.5e-08%2C 27.3%25 id in 132 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001516;product=putative C4-dicarboxylate transporter%2C small subunit;protein_id=CAL20223.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1800333	1800398	.	-	.	ID=id3729;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1800459	1800524	.	-	.	ID=id3730;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1800582	1800647	.	-	.	ID=id3731;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1800693	1800758	.	-	.	ID=id3732;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1800921	1801913	.	-	.	ID=gene1566;Name=YPO1579;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1579
AL590842.1	EMBL	CDS	1800921	1801913	.	-	0	ID=cds1533;Parent=gene1566;Dbxref=GOA:Q74V65,InterPro:IPR004682,InterPro:IPR018389,UniProtKB/TrEMBL:Q74V65,NCBI_GP:CAL20224.1;Name=CAL20224.1;Note=Similar to Rhodobacter capsulatus C4-dicarboxylate-binding periplasmic protein precursor DctP SW:DCTP_RHOCA (P37735) (333 aa) fasta scores: E(): 2.6e-21%2C29.3%25 id in 311 aa%2C and to Wolinella succinogenes putative C4-dicarboxylate-binding periplasmic protein precursor DctP TR:Q9Z4J3 (EMBL:AJ132740) (329 aa) fasta scores: E(): 2.3e-20%2C 30.9%25 id in 265 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ132740;product=putative C4-dicarboxylate transporter%2Cperiplasmic protein;protein_id=CAL20224.1;transl_table=11
AL590842.1	EMBL	gene	1802436	1803176	.	+	.	ID=gene1567;Name=YPO1580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1580
AL590842.1	EMBL	CDS	1802436	1803176	.	+	0	ID=cds1534;Parent=gene1567;Dbxref=GOA:Q74V64,InterPro:IPR003542,InterPro:IPR008278,UniProtKB/TrEMBL:Q74V64,NCBI_GP:CAL20225.1;Name=CAL20225.1;Note=Similar to Vibrio cholerae phosphopantetheinyl transferase involved in siderophore biosynthesis%2C VibD TR:Q9RCF2 (EMBL:U52150) (237 aa) fasta scores: E(): 1.8e-11%2C 37.4%25 id in 190 aa%2C and to Pseudomonas aeruginosa PA01 hypothetical protein TR:AAG04554 (EMBL:Q9I4H2) (242 aa) fasta scores: E(): 6.9e-19%2C 38.2%25 id in 204 aa;gbkey=CDS;inference=similar to sequence:INSDC:U52150;product=putative phosphopantetheinyl transferase;protein_id=CAL20225.1;transl_table=11
AL590842.1	EMBL	gene	1803563	1805689	.	-	.	ID=gene1568;Name=rafA;gbkey=Gene;gene=rafA;gene_biotype=protein_coding;locus_tag=YPO1581
AL590842.1	EMBL	CDS	1803563	1805689	.	-	0	ID=cds1535;Parent=gene1568;Dbxref=GOA:Q0WGJ4,InterPro:IPR000111,InterPro:IPR002252,InterPro:IPR013785,InterPro:IPR017853,UniProtKB/TrEMBL:Q0WGJ4,NCBI_GP:CAL20226.1;Name=CAL20226.1;Note=Similar to Escherichia coli alpha-galactosidase RafA SW:RAFA_ECOLI (P16551) (708 aa) fasta scores: E(): 0%2C 57.9%25 id in 705 aa%2C and to Bacillus stearothermophilus alpha-galactosidase AgaN TR:Q9X624 (EMBL:AF130985) (729 aa) fasta scores: E(): 0%2C 31.4%25 id in 710 aa;gbkey=CDS;gene=rafA;inference=similar to sequence:INSDC:AF130985;product=alpha-galactosidase;protein_id=CAL20226.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1804676	1804723	.	-	.	ID=id3733;Note=PS00512 Alpha-galactosidase signature.;gbkey=misc_feature;gene=rafA;inference=protein motif:ProSite:PS00512
AL590842.1	EMBL	pseudogene	1805767	1806996	.	-	.	ID=gene1569;Name=b0343;gbkey=Gene;gene=b0343;gene_biotype=pseudogene;gene_synonym=lacY;locus_tag=YPO1582;pseudo=true
AL590842.1	EMBL	CDS	1805767	1806996	.	-	0	ID=cds1536;Parent=gene1569;Note=This CDS is disrupted by the insertion of IS285 element. As a consequence it is lacking 19 aa at the N-terminal end. Similar to Escherichia coli lactose permease LacY or B0343 SW:LACY_ECOLI (P02920) (417 aa) fasta scores: E(): 1.5e-115%2C 68.182%25 id in 396 aa;gbkey=CDS;gene=b0343;inference=protein motif:TMHMM:2.0;product=lactose permease (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	1805842	1805907	.	-	.	ID=id3734;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=b0343;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1805953	1806018	.	-	.	ID=id3735;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=b0343;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1806040	1806105	.	-	.	ID=id3736;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=b0343;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1806118	1806183	.	-	.	ID=id3737;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=b0343;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1806205	1806270	.	-	.	ID=id3738;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=b0343;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1806337	1806387	.	-	.	ID=id3739;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=b0343;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1806493	1806549	.	-	.	ID=id3740;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=b0343;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1806562	1806618	.	-	.	ID=id3741;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=b0343;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1806679	1806744	.	-	.	ID=id3742;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=b0343;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1806760	1806825	.	-	.	ID=id3743;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=b0343;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1806865	1806915	.	-	.	ID=id3744;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=b0343;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1805815	1807044	.	-	.	ID=id3745;Note=Pfam match to entry PF01306 LacY_symp%2C LacY proton/sugar symporter%2C score 844.10%2C E-value 4.7e-250;gbkey=misc_feature;inference=protein motif:PF01306
AL590842.1	EMBL	repeat_region	1806998	1808312	.	+	.	ID=id3746;Note=insertion sequence:IS285;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	1806998	1807026	.	+	.	ID=id3747;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1807069	1808277	.	+	.	ID=gene1570;Name=y1062;gbkey=Gene;gene=y1062;gene_biotype=protein_coding;gene_synonym=ypmt1.80C;locus_tag=YPO1583
AL590842.1	EMBL	CDS	1807069	1808277	.	+	0	ID=cds1537;Parent=gene1570;Dbxref=GOA:O68779,InterPro:IPR001207,UniProtKB/TrEMBL:O68779,NCBI_GP:CAL20228.1;Name=CAL20228.1;Note=Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa%2C and to Escherichia coli transposase-like protein TnpA TR:AAG18473 (EMBL:AF143819) (402 aa) fasta scores: E(): 0%2C 76.1%25 id in 402 aa;gbkey=CDS;gene=y1062;inference=similar to sequence:INSDC:AF143819;product=transposase for the IS285 insertion element;protein_id=CAL20228.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1807069	1808205	.	+	.	ID=id3748;Note=Pfam match to entry PF00872 Transpo_mutator%2CTransposase%2C Mutator family%2C score 430.40%2C E-value 1.6e-125;gbkey=misc_feature;gene=y1062;inference=protein motif:PF00872
AL590842.1	EMBL	sequence_feature	1807762	1807836	.	+	.	ID=id3749;Note=PS01007 Transposases%2C Mutator family%2C signature.;gbkey=misc_feature;gene=y1062;inference=protein motif:ProSite:PS01007
AL590842.1	EMBL	INVERTED	1808284	1808312	.	-	.	ID=id3750;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	pseudogene	1808315	1808536	.	-	.	ID=gene1571;Name=YPO1584;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO1584;pseudo=true
AL590842.1	EMBL	CDS	1808315	1808536	.	-	0	ID=cds1538;Parent=gene1571;Note=This CDS is disrupted by the insertion of IS285 element. This insertion occurred near the C-terminal end (following codon 74)%2C replacing the C-terminal 10 aa with 24 aa encoded within the IS element. It is not clear whether this insertion affects the function of the protein. Similar to Escherichia coli hypothetical 9.7 kDa protein in solA-dinI intergenic region YceP or B1060 SW:YCEP_ECOLI (P75927) (84 aa) fasta scores: E(): 1e-20%2C 72.603%25 id in 73 aa;gbkey=CDS;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	1808703	1808843	.	+	.	ID=gene1572;Name=YPO1585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1585
AL590842.1	EMBL	CDS	1808703	1808843	.	+	0	ID=cds1539;Parent=gene1572;Dbxref=UniProtKB/TrEMBL:Q0WGJ2,NCBI_GP:CAL20230.1;Name=CAL20230.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20230.1;transl_table=11
AL590842.1	EMBL	gene	1809042	1809287	.	-	.	ID=gene1573;Name=dinI;gbkey=Gene;gene=dinI;gene_biotype=protein_coding;locus_tag=YPO1586
AL590842.1	EMBL	CDS	1809042	1809287	.	-	0	ID=cds1540;Parent=gene1573;Dbxref=InterPro:IPR010391,UniProtKB/TrEMBL:Q74TC1,NCBI_GP:CAL20231.1;Name=CAL20231.1;Note=Similar to Serratia marcescens DNA-damage-inducible protein I DinI SW:DINI_SERMA (Q9S3S0) (79 aa) fasta scores: E(): 1.8e-20%2C 72.8%25 id in 81 aa%2C and to Escherichia coli DNA-damage-inducible protein I SW:DINI_ECOLI (Q47143) (81 aa) fasta scores: E(): 1.1e-17%2C 63.0%25 id in 81 aa;gbkey=CDS;gene=dinI;product=DNA-damage-inducible protein I;protein_id=CAL20231.1;transl_table=11
AL590842.1	EMBL	gene	1809600	1810646	.	-	.	ID=gene1574;Name=b1062;gbkey=Gene;gene=b1062;gene_biotype=protein_coding;gene_synonym=pyrC;locus_tag=YPO1587
AL590842.1	EMBL	CDS	1809600	1810646	.	-	0	ID=cds1541;Parent=gene1574;Dbxref=GOA:Q8ZFU4,InterPro:IPR002195,InterPro:IPR004721,InterPro:IPR006680,NCBI_GP:CAL20232.1;Name=CAL20232.1;Note=Similar to Escherichia coli dihydroorotase SW:PYRC_ECOLI (P05020) (347 aa) fasta scores: E(): 0%2C 72.3%25 id in 347 aa%2C and to Salmonella typhimurium dihydroorotase SW:PYRC_SALTY (P06204) (347 aa) fasta scores: E(): 0%2C 71.8%25 id in 347 aa;gbkey=CDS;gene=b1062;product=dihydroorotase;protein_id=CAL20232.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1809867	1809902	.	-	.	ID=id3751;Note=PS00483 Dihydroorotase signature 2.;gbkey=misc_feature;gene=b1062;inference=protein motif:ProSite:PS00483
AL590842.1	EMBL	gene	1810881	1811168	.	+	.	ID=gene1575;Name=YPO1588;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1588
AL590842.1	EMBL	CDS	1810881	1811168	.	+	0	ID=cds1542;Parent=gene1575;Dbxref=InterPro:IPR007138,InterPro:IPR011008,UniProtKB/TrEMBL:Q7CJ27,NCBI_GP:CAL20233.1;Name=CAL20233.1;Note=Similar to Neisseria meningitidis hypothetical protein NMA1764 TR:Q9JTI2 (EMBL:AL162757) (97 aa) fasta scores: E(): 3.8e-13%2C 38.7%25 id in 93 aa%2C and to Vibrio cholerae hypothetical protein VCA0636 TR:Q9KLV5 (EMBL:AE004393) (96 aa) fasta scores: E(): 3.5e-08%2C 34.8%25 id in 92 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL162757;product=conserved hypothetical protein;protein_id=CAL20233.1;transl_table=11
AL590842.1	EMBL	repeat_region	1811410	1812724	.	-	.	ID=id3752;Note=insertion sequence:IS285;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	1811410	1811438	.	+	.	ID=id3753;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1811445	1812653	.	-	.	ID=gene1576;Name=y1062;gbkey=Gene;gene=y1062;gene_biotype=protein_coding;gene_synonym=ypmt1.80C;locus_tag=YPO1589
AL590842.1	EMBL	CDS	1811445	1812653	.	-	0	ID=cds1543;Parent=gene1576;Dbxref=GOA:O68779,InterPro:IPR001207,UniProtKB/TrEMBL:O68779,NCBI_GP:CAL20234.1;Name=CAL20234.1;Note=Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa;gbkey=CDS;gene=y1062;inference=similar to sequence:INSDC:AF053947;product=transposase for the IS285 insertion element;protein_id=CAL20234.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1811517	1812653	.	-	.	ID=id3754;Note=Pfam match to entry PF00872 Transpo_mutator%2CTransposase%2C Mutator family%2C score 430.40%2C E-value 1.6e-125;gbkey=misc_feature;gene=y1062;inference=protein motif:PF00872
AL590842.1	EMBL	sequence_feature	1811886	1811960	.	-	.	ID=id3755;Note=PS01007 Transposases%2C Mutator family%2C signature.;gbkey=misc_feature;gene=y1062;inference=protein motif:ProSite:PS01007
AL590842.1	EMBL	INVERTED	1812696	1812724	.	-	.	ID=id3756;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1812749	1816414	.	-	.	ID=gene1577;Name=ams;gbkey=Gene;gene=ams;gene_biotype=protein_coding;gene_synonym=hmp1,rne;locus_tag=YPO1590
AL590842.1	EMBL	CDS	1812749	1816414	.	-	0	ID=cds1544;Parent=gene1577;Dbxref=GOA:Q74TC3,InterPro:IPR003029,InterPro:IPR004659,InterPro:IPR012340,InterPro:IPR019307,InterPro:IPR021968,InterPro:IPR022967,InterPro:IPR028878,UniProtKB/TrEMBL:Q74TC3,NCBI_GP:CAL20235.1;Name=CAL20235.1;Note=Similar to Escherichia coli ribonuclease E Rne or Ams or Hmp1 SW:RNE_ECOLI (P21513) (1061 aa) fasta scores: E(): 0%2C 60.4%25 id in 1241 aa%2C and to Vibrio cholerae ribonuclease E VC2030 TR:Q9KQG8 (EMBL:AE004277) (1052 aa) fasta scores: E(): 0%2C 50.8%25 id in 1228 aa. The N-terminal (~~first 500 aa) sequence is the most highly conserved part. Beyond that%2C this CDS%2C contains several insertions relative to other ribonucleases;gbkey=CDS;gene=ams;inference=similar to sequence:INSDC:AE004277;product=ribonuclease E;protein_id=CAL20235.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1816058	1816312	.	-	.	ID=id3757;Note=Pfam match to entry PF00575 S1%2C S1 RNA binding domain%2C score 70.30%2C E-value 8.8e-18;gbkey=misc_feature;gene=ams;inference=protein motif:PF00575
AL590842.1	EMBL	gene	1816989	1817951	.	+	.	ID=gene1578;Name=rluC;gbkey=Gene;gene=rluC;gene_biotype=protein_coding;locus_tag=YPO1591
AL590842.1	EMBL	CDS	1816989	1817951	.	+	0	ID=cds1545;Parent=gene1578;Dbxref=GOA:Q8ZFU1,InterPro:IPR002942,InterPro:IPR006145,InterPro:IPR006224,InterPro:IPR006225,InterPro:IPR020103,NCBI_GP:CAL20236.1;Name=CAL20236.1;Note=Similar to Escherichia coli ribosomal large subunit pseudouridine synthase C RluC SW:RLUC_ECOLI (P23851) (319 aa) fasta scores: E(): 0%2C 80.7%25 id in 316 aa%2C and to Haemophilus influenzae ribosomal large subunit pseudouridine synthase C Rluc or hi0412 SW:RLUC_HAEIN (P44433) (322 aa) fasta scores: E(): 0%2C 73.3%25 id in 315 aa;gbkey=CDS;gene=rluC;product=ribosomal large subunit pseudouridine synthase C;protein_id=CAL20236.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1817046	1817186	.	+	.	ID=id3758;Note=Pfam match to entry PF01479 S4%2C S4 domain%2C score 17.30%2C E-value 0.033;gbkey=misc_feature;gene=rluC;inference=protein motif:PF01479
AL590842.1	EMBL	sequence_feature	1817289	1817738	.	+	.	ID=id3759;Note=Pfam match to entry PF00849 PseudoU_synth_2%2C RNA pseudouridylate synthase%2C score 188.70%2C E-value 9.2e-53;gbkey=misc_feature;gene=rluC;inference=protein motif:PF00849
AL590842.1	EMBL	sequence_feature	1817406	1817450	.	+	.	ID=id3760;Note=PS01129 Rlu family of pseudouridine synthase signature.;gbkey=misc_feature;gene=rluC;inference=protein motif:ProSite:PS01129
AL590842.1	EMBL	repeat_region	1818026	1818737	.	+	.	ID=id3761;Note=Contains a 'A' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	1818171	1818629	.	+	.	ID=gene1579;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO1592
AL590842.1	EMBL	CDS	1818171	1818629	.	+	0	ID=cds1546;Parent=gene1579;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL20237.1;Name=CAL20237.1;Note=Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL20237.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1818225	1818536	.	+	.	ID=id3762;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	1818784	1819380	.	-	.	ID=gene1580;Name=YPO1593;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1593
AL590842.1	EMBL	CDS	1818784	1819380	.	-	0	ID=cds1547;Parent=gene1580;Dbxref=GOA:P58635,InterPro:IPR003697,InterPro:IPR029001,NCBI_GP:CAL20238.1;Name=CAL20238.1;Note=Similar to Escherichia coli hypothetical protein YceF SW:YCEF_ECOLI (P27244) (207 aa) fasta scores: E(): 0%2C67.2%25 id in 192 aa%2C and to Vibrio cholerae Maf/Ycef/Yhde family protein VC2027 TR:Q9KQH1 (EMBL:AE004277) (193 aa) fasta scores: E(): 0%2C 57.4%25 id in 188 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004277;product=conserved hypothetical protein;protein_id=CAL20238.1;transl_table=11
AL590842.1	EMBL	gene	1819522	1820046	.	+	.	ID=gene1581;Name=YPO1594;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1594
AL590842.1	EMBL	CDS	1819522	1820046	.	+	0	ID=cds1548;Parent=gene1581;Dbxref=InterPro:IPR003772,UniProtKB/TrEMBL:Q7CJ25,NCBI_GP:CAL20239.1;Name=CAL20239.1;Note=Similar to Escherichia coli hypothetical protein Yced or G30K SW:YCED_ECOLI (P14189) (173 aa) fasta scores: E(): 0%2C 79.7%25 id in 172 aa%2C and to Haemophilus influenzae hypothetical protein HI0159 SW:YCED_HAEIN (P43790) (174 aa) fasta scores: E(): 0%2C 55.5%25 id in 173 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL20239.1;transl_table=11
AL590842.1	EMBL	gene	1820059	1820226	.	+	.	ID=gene1582;Name=rpmF;gbkey=Gene;gene=rpmF;gene_biotype=protein_coding;locus_tag=YPO1595
AL590842.1	EMBL	CDS	1820059	1820226	.	+	0	ID=cds1549;Parent=gene1582;Dbxref=GOA:Q8ZFT9,InterPro:IPR002677,InterPro:IPR011332,NCBI_GP:CAL20240.1;Name=CAL20240.1;Note=Similar to Escherichia coli%2C and Salmonella typhimurium 50S ribosomal protein L32 SW:RL32_ECOLI (P02435) (56 aa) fasta scores: E(): 3.4e-20%2C 90.7%25 id in 54 aa%2C and to Haemophilus influenzae 50S ribosomal protein L32 RpmF or Rpl32 or Hi0158 SW:RL32_HAEIN (P44368) (55 aa) fasta scores: E(): 4.3e-19%2C 83.0%25 id in 53 aa;gbkey=CDS;gene=rpmF;product=50S ribosomal protein L32;protein_id=CAL20240.1;transl_table=11
AL590842.1	EMBL	gene	1820260	1821294	.	+	.	ID=gene1583;Name=plsX;gbkey=Gene;gene=plsX;gene_biotype=protein_coding;locus_tag=YPO1596
AL590842.1	EMBL	CDS	1820260	1821294	.	+	0	ID=cds1550;Parent=gene1583;Dbxref=GOA:Q8ZFT8,InterPro:IPR003664,InterPro:IPR012281,InterPro:IPR024084,NCBI_GP:CAL20241.1;Name=CAL20241.1;Note=Similar to Salmonella typhimurium fatty acid/phospholipid synthesis protein PlsX SW:PLSX_SALTY (O85138) (359 aa) fasta scores: E(): 0%2C 80.8%25 id in 338 aa%2Cand to Escherichia coli fatty acid/phospholipid synthesis protein PlsX SW:PLSX_ECOLI (P27247) (356 aa) fasta scores: E(): 0%2C 80.5%25 id in 338 aa;gbkey=CDS;gene=plsX;product=fatty acid/phospholipid synthesis protein;protein_id=CAL20241.1;transl_table=11
AL590842.1	EMBL	gene	1821301	1822251	.	+	.	ID=gene1584;Name=fabH;gbkey=Gene;gene=fabH;gene_biotype=protein_coding;locus_tag=YPO1597
AL590842.1	EMBL	CDS	1821301	1822251	.	+	0	ID=cds1551;Parent=gene1584;Dbxref=GOA:Q8ZFT7,InterPro:IPR004655,InterPro:IPR013747,InterPro:IPR013751,InterPro:IPR016038,InterPro:IPR016039,NCBI_GP:CAL20242.1;Name=CAL20242.1;Note=Similar to Escherichia coli 3-oxoacyl-[acyl-carrier-protein] synthase III SW:FABH_ECOLI (P24249) (317 aa) fasta scores: E(): 0%2C 81.1%25 id in 317 aa%2Cand to Salmonella typhimurium 3-oxoacyl-[acyl-carrier-protein] synthase III SW:FABH_SALTY (O85139) (317 aa) fasta scores: E(): 0%2C 82.0%25 id in 317 aa;gbkey=CDS;gene=fabH;product=3-oxoacyl-[acyl-carrier-protein] synthase III;protein_id=CAL20242.1;transl_table=11
AL590842.1	EMBL	gene	1822289	1823218	.	+	.	ID=gene1585;Name=fabD;gbkey=Gene;gene=fabD;gene_biotype=protein_coding;gene_synonym=tfpA;locus_tag=YPO1598
AL590842.1	EMBL	CDS	1822289	1823218	.	+	0	ID=cds1552;Parent=gene1585;Dbxref=GOA:Q7CJ24,InterPro:IPR001227,InterPro:IPR004410,InterPro:IPR014043,InterPro:IPR016035,InterPro:IPR016036,InterPro:IPR024925,UniProtKB/TrEMBL:Q7CJ24,NCBI_GP:CAL20243.1;Name=CAL20243.1;Note=Similar to Escherichia coli malonyl CoA-acyl carrier protein transacylase FabD or TfpA SW:FABD_ECOLI (P25715) (308 aa) fasta scores: E(): 0%2C 78.5%25 id in 307 aa%2C and to Salmonella typhimurium malonyl CoA-acyl carrier protein transacylase SW:FABD_SALTY (O85140) (308 aa) fasta scores: E(): 0%2C 79.7%25 id in 306 aa;gbkey=CDS;gene=fabD;product=malonyl CoA-acyl carrier protein transacylase;protein_id=CAL20243.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1822298	1823215	.	+	.	ID=id3763;Note=Pfam match to entry PF00698 Acyl_transf%2C Acyl transferase domain%2C score 366.40%2C E-value 2.9e-106;gbkey=misc_feature;gene=fabD;inference=protein motif:PF00698
AL590842.1	EMBL	gene	1823232	1823966	.	+	.	ID=gene1586;Name=fabG;gbkey=Gene;gene=fabG;gene_biotype=protein_coding;locus_tag=YPO1599
AL590842.1	EMBL	CDS	1823232	1823966	.	+	0	ID=cds1553;Parent=gene1586;Dbxref=GOA:Q7CJ23,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR011284,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:Q7CJ23,NCBI_GP:CAL20244.1;Name=CAL20244.1;Note=Similar to Escherichia coli 3-oxoacyl-[acyl-carrier protein] reductase FabG SW:FABG_ECOLI (P25716) (244 aa) fasta scores: E(): 0%2C 86.9%25 id in 244 aa%2C and to Salmonella typhimurium 3-oxoacyl-[acyl-carrier protein] reductase SW:FABG_SALTY (O85141) (244 aa) fasta scores: E(): 0%2C 88.9%25 id in 244 aa;gbkey=CDS;gene=fabG;product=3-oxoacyl-[acyl-carrier protein] reductase;protein_id=CAL20244.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1823247	1823792	.	+	.	ID=id3764;Note=Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase%2C score 252.60%2C E-value 5.2e-72;gbkey=misc_feature;gene=fabG;inference=protein motif:PF00106
AL590842.1	EMBL	sequence_feature	1823643	1823729	.	+	.	ID=id3765;Note=PS00061 Short-chain dehydrogenases/reductases family signature.;gbkey=misc_feature;gene=fabG;inference=protein motif:ProSite:PS00061
AL590842.1	EMBL	sequence_feature	1823850	1823942	.	+	.	ID=id3766;Note=Pfam match to entry PF00678 adh_short_C2%2C Short chain dehydrogenase/reductase C-terminus%2C score 58.90%2CE-value 4.2e-15;gbkey=misc_feature;gene=fabG;inference=protein motif:PF00678
AL590842.1	EMBL	gene	1824120	1824356	.	+	.	ID=gene1587;Name=acpP;gbkey=Gene;gene=acpP;gene_biotype=protein_coding;locus_tag=YPO1600
AL590842.1	EMBL	CDS	1824120	1824356	.	+	0	ID=cds1554;Parent=gene1587;Dbxref=GOA:Q8ZFT4,InterPro:IPR003231,InterPro:IPR006162,InterPro:IPR009081,NCBI_GP:CAL20245.1;Name=CAL20245.1;Note=Similar to Escherichia coli acyl carrier protein SW:ACP_ECOLI (P02901) (77 aa) fasta scores: E(): 2.7e-21%2C89.5%25 id in 76 aa%2C and to Vibrio cholerae acyl carrier protein Vc2020 TR:Q9KQH8 (EMBL:AE004276) (110 aa) fasta scores: E(): 2.3e-21%2C 87.2%25 id in 78 aa;gbkey=CDS;gene=acpP;inference=similar to sequence:INSDC:AE004276;product=acyl carrier protein;protein_id=CAL20245.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1824135	1824338	.	+	.	ID=id3767;Note=Pfam match to entry PF00550 pp-binding%2CPhosphopantetheine attachment site%2C score 80.10%2C E-value 1.6e-20;gbkey=misc_feature;gene=acpP;inference=protein motif:PF00550
AL590842.1	EMBL	sequence_feature	1824213	1824260	.	+	.	ID=id3768;Note=PS00012 Phosphopantetheine attachment site.;gbkey=misc_feature;gene=acpP;inference=protein motif:ProSite:PS00012
AL590842.1	EMBL	gene	1824451	1825692	.	+	.	ID=gene1588;Name=fabF;gbkey=Gene;gene=fabF;gene_biotype=protein_coding;gene_synonym=fabJ;locus_tag=YPO1601
AL590842.1	EMBL	CDS	1824451	1825692	.	+	0	ID=cds1555;Parent=gene1588;Dbxref=GOA:Q7CJ22,InterPro:IPR014030,InterPro:IPR014031,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR017568,InterPro:IPR018201,UniProtKB/TrEMBL:Q7CJ22,NCBI_GP:CAL20246.1;Name=CAL20246.1;Note=Similar to Escherichia coli 3-oxoacyl-[acyl-carrier-protein] synthase II FabF or FabJ SW:FABF_ECOLI (P39435) (412 aa) fasta scores: E(): 0%2C 89.3%25 id in 412 aa%2C and to Photobacterium profundum beta-ketoacyl-acyl carrier protein synthase II FabF TR:Q9R6Z2 (EMBL:AF188707) (413 aa) fasta scores: E(): 0%2C74.8%25 id in 413 aa. Similar to YPO1425 (52.0%25 identity in 323 aa overlap);gbkey=CDS;gene=fabF;inference=similar to sequence:INSDC:AF188707;product=3-oxoacyl-[acyl-carrier-protein] synthase II;protein_id=CAL20246.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1824466	1825686	.	+	.	ID=id3769;Note=Pfam match to entry PF00109 ketoacyl-synt%2CBeta-ketoacyl synthase%2C score 553.90%2C E-value 1.1e-162;gbkey=misc_feature;gene=fabF;inference=protein motif:PF00109
AL590842.1	EMBL	sequence_feature	1824913	1824963	.	+	.	ID=id3770;Note=PS00606 Beta-ketoacyl synthases active site.;gbkey=misc_feature;gene=fabF;inference=protein motif:ProSite:PS00606
AL590842.1	EMBL	repeat_region	1825747	1826458	.	+	.	ID=id3771;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	1825892	1826350	.	+	.	ID=gene1589;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO1602
AL590842.1	EMBL	CDS	1825892	1826350	.	+	0	ID=cds1556;Parent=gene1589;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL20247.1;Name=CAL20247.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL20247.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1825946	1826257	.	+	.	ID=id3772;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	1826766	1827572	.	+	.	ID=gene1590;Name=pabC;gbkey=Gene;gene=pabC;gene_biotype=protein_coding;locus_tag=YPO1603
AL590842.1	EMBL	CDS	1826766	1827572	.	+	0	ID=cds1557;Parent=gene1590;Dbxref=GOA:Q7CJ20,InterPro:IPR001544,InterPro:IPR017824,InterPro:IPR018300,UniProtKB/TrEMBL:Q7CJ20,NCBI_GP:CAL20248.1;Name=CAL20248.1;Note=Similar to Escherichia coli 4-amino-4-deoxychorismate lyase SW:PABC_ECOLI (P28305) (269 aa) fasta scores: E(): 0%2C 56.6%25 id in 265 aa%2C and to Vibrio harveyi 4-amino-4-deoxychorismate lyase SW:PABC_VIBHA (Q56693) (271 aa) fasta scores: E(): 0%2C 40.5%25 id in 247 aa;gbkey=CDS;gene=pabC;product=4-amino-4-deoxychorismate lyase;protein_id=CAL20248.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1826766	1827551	.	+	.	ID=id3773;Note=Pfam match to entry PF01063 aminotran_4%2CAminotransferase class IV%2C score 118.00%2C E-value 1.8e-31;gbkey=misc_feature;gene=pabC;inference=protein motif:PF01063
AL590842.1	EMBL	sequence_feature	1827282	1827371	.	+	.	ID=id3774;Note=PS00770 Aminotransferases class-IV signature.;gbkey=misc_feature;gene=pabC;inference=protein motif:ProSite:PS00770
AL590842.1	EMBL	gene	1827861	1828886	.	+	.	ID=gene1591;Name=yceG;gbkey=Gene;gene=yceG;gene_biotype=protein_coding;locus_tag=YPO1604
AL590842.1	EMBL	CDS	1827861	1828886	.	+	0	ID=cds1558;Parent=gene1591;Dbxref=GOA:Q74TD0,InterPro:IPR003770,InterPro:IPR013087,UniProtKB/TrEMBL:Q74TD0,NCBI_GP:CAL20249.1;Name=CAL20249.1;Note=Similar to Escherichia coli hypothetical 38.2 kDa protein in pabC-holB intergenic region YceG SW:YCEG_ECOLI (P28306) (340 aa) fasta scores: E(): 0%2C 62.8%25 id in 339 aa%2Cand to Haemophilus influenzae hypothetical protein Hi0457 SW:YCEG_HAEIN (P44720) (347 aa) fasta scores: E(): 0%2C 48.6%25 id in 346 aa;gbkey=CDS;gene=yceG;product=putative exported protein;protein_id=CAL20249.1;transl_table=11
AL590842.1	EMBL	gene	1828876	1829514	.	+	.	ID=gene1592;Name=tmk;gbkey=Gene;gene=tmk;gene_biotype=protein_coding;locus_tag=YPO1605
AL590842.1	EMBL	CDS	1828876	1829514	.	+	0	ID=cds1559;Parent=gene1592;Dbxref=GOA:O69169,InterPro:IPR018094,InterPro:IPR018095,InterPro:IPR027417,NCBI_GP:CAL20250.1;Name=CAL20250.1;Note=Similar to the previously sequenced Yersinia pestis thymidylate kinase TmK SW:KTHY_YERPE (O69169) (212 aa) fasta scores: E(): 0%2C 100.0%25 id in 212 aa%2C and to Escherichia coli thymidylate kinase SW:KTHY_ECOLI (P37345) (213 aa) fasta scores: E(): 0%2C 71.2%25 id in 208 aa;gbkey=CDS;gene=tmk;product=thymidylate kinase;protein_id=CAL20250.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1828897	1829469	.	+	.	ID=id3775;Note=Pfam match to entry PF02223 Thymidylate_kin%2CThymidylate kinase%2C score 293.80%2C E-value 2.1e-84;gbkey=misc_feature;gene=tmk;inference=protein motif:PF02223
AL590842.1	EMBL	sequence_feature	1828903	1828926	.	+	.	ID=id3776;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=tmk;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1829158	1829196	.	+	.	ID=id3777;Note=PS01331 Thymidylate kinase signature.;gbkey=misc_feature;gene=tmk;inference=protein motif:ProSite:PS01331
AL590842.1	EMBL	gene	1829514	1830536	.	+	.	ID=gene1593;Name=holB;gbkey=Gene;gene=holB;gene_biotype=protein_coding;locus_tag=YPO1606
AL590842.1	EMBL	CDS	1829514	1830536	.	+	0	ID=cds1560;Parent=gene1593;Dbxref=GOA:O69170,InterPro:IPR004622,InterPro:IPR008921,InterPro:IPR015199,InterPro:IPR027417,NCBI_GP:CAL20251.1;Name=CAL20251.1;Note=Similar to Escherichia coli DNA polymerase III%2Cdelta' subunit HolB SW:HOLB_ECOLI (P28631) (334 aa) fasta scores: E(): 0%2C 51.5%25 id in 342 aa%2C and to Haemophilus influenzae DNA polymerase III%2C delta' subunit HolB or Hi0455 SW:HOLB_HAEIN (P43748) (327 aa) fasta scores: E(): 0%2C 39.8%25 id in 319 aa;gbkey=CDS;gene=holB;product=DNA polymerase III%2C delta' subunit;protein_id=CAL20251.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1829688	1829705	.	+	.	ID=id3778;Note=PS00190 Cytochrome c family heme-binding site signature.;gbkey=misc_feature;gene=holB;inference=protein motif:ProSite:PS00190
AL590842.1	EMBL	gene	1830551	1831360	.	+	.	ID=gene1594;Name=YPO1607;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1607
AL590842.1	EMBL	CDS	1830551	1831360	.	+	0	ID=cds1561;Parent=gene1594;Dbxref=GOA:Q7CJ19,InterPro:IPR001130,InterPro:IPR015991,InterPro:IPR018228,UniProtKB/TrEMBL:Q7CJ19,NCBI_GP:CAL20252.1;Name=CAL20252.1;Note=Similar to Escherichia coli hypothetical protein%2Cputative deoxyribonuclease%2C Ycfh SW:YCFH_ECOLI (P37346) (265 aa) fasta scores: E(): 0%2C 76.0%25 id in 263 aa%2C and to Haemophilus influenzae hypothetical protein HI0454%2Cputative deoxyribonuclease%2C HI0454 SW:YCFH_HAEIN (P44718) (260 aa) fasta scores: E(): 0%2C 57.2%25 id in 257 aa;gbkey=CDS;product=putative deoxyribonuclease;protein_id=CAL20252.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1830557	1830583	.	+	.	ID=id3779;Note=PS01137 Uncharacterized protein family UPF0006 signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS01137
AL590842.1	EMBL	sequence_feature	1830572	1831315	.	+	.	ID=id3780;Note=Pfam match to entry PF01026 UPF0006%2C Metalloenzyme of unknown function UPF0006%2C score 389.60%2C E-value 3.1e-113;gbkey=misc_feature;inference=protein motif:PF01026
AL590842.1	EMBL	sequence_feature	1830926	1830958	.	+	.	ID=id3781;Note=PS01090 Uncharacterized protein family UPF0006 signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS01090
AL590842.1	EMBL	sequence_feature	1831121	1831171	.	+	.	ID=id3782;Note=PS01091 Uncharacterized protein family UPF0006 signature 3.;gbkey=misc_feature;inference=protein motif:ProSite:PS01091
AL590842.1	EMBL	gene	1831666	1833099	.	+	.	ID=gene1595;Name=glcA;gbkey=Gene;gene=glcA;gene_biotype=protein_coding;gene_synonym=ptsG,umG;locus_tag=YPO1608
AL590842.1	EMBL	CDS	1831666	1833099	.	+	0	ID=cds1562;Parent=gene1595;Dbxref=GOA:Q7CJ18,InterPro:IPR001996,InterPro:IPR003352,InterPro:IPR011299,InterPro:IPR013013,InterPro:IPR018113,UniProtKB/TrEMBL:Q7CJ18,NCBI_GP:CAL20253.1;Name=CAL20253.1;Note=Similar to Escherichia coli PTS system%2Cglucose-specific IIBC component Ptsg or Glca or UmG SW:PTGB_ECOLI (P05053) (477 aa) fasta scores: E(): 0%2C 90.4%25 id in 477 aa%2C and to Salmonella typhimurium PTS system%2Cglucose-specific IIBC component PtsG SW:PTGB_SALTY (P37439) (477 aa) fasta scores: E(): 0%2C 88.7%25 id in 477 aa;gbkey=CDS;gene=glcA;inference=protein motif:TMHMM:2.0;product=PTS system%2C glucose-specific IIBC component;protein_id=CAL20253.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1831702	1832625	.	+	.	ID=id3783;Note=Pfam match to entry PF02378 PTS_EIIC%2C %2C score 456.90%2C E-value 1.7e-133;gbkey=misc_feature;gene=glcA;inference=protein motif:PF02378
AL590842.1	EMBL	sequence_feature	1831708	1831776	.	+	.	ID=id3784;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=glcA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1831810	1831878	.	+	.	ID=id3785;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=glcA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1831906	1831974	.	+	.	ID=id3786;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=glcA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1832011	1832079	.	+	.	ID=id3787;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=glcA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1832122	1832181	.	+	.	ID=id3788;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=glcA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1832413	1832481	.	+	.	ID=id3789;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=glcA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1832509	1832577	.	+	.	ID=id3790;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=glcA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1832590	1832658	.	+	.	ID=id3791;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=glcA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1832725	1832793	.	+	.	ID=id3792;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=glcA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1832869	1832973	.	+	.	ID=id3793;Note=Pfam match to entry PF00367 PTS_EIIB%2Cphosphotransferase system%2C EIIB%2C score 66.30%2C E-value 1.3e-17;gbkey=misc_feature;gene=glcA;inference=protein motif:PF00367
AL590842.1	EMBL	sequence_feature	1832905	1832958	.	+	.	ID=id3794;Note=PS01035 PTS EIIB domains cysteine phosphorylation site signature.;gbkey=misc_feature;gene=glcA;inference=protein motif:ProSite:PS01035
AL590842.1	EMBL	repeat_region	1833144	1833855	.	+	.	ID=id3795;Note=Contains a 'A' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	1833289	1833747	.	+	.	ID=gene1596;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO1609
AL590842.1	EMBL	CDS	1833289	1833747	.	+	0	ID=cds1563;Parent=gene1596;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL20254.1;Name=CAL20254.1;Note=Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL20254.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1833343	1833654	.	+	.	ID=id3796;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	1834130	1835008	.	+	.	ID=gene1597;Name=YPO1610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1610
AL590842.1	EMBL	CDS	1834130	1835008	.	+	0	ID=cds1564;Parent=gene1597;Dbxref=GOA:Q7CJ16,InterPro:IPR013708,InterPro:IPR016040,UniProtKB/TrEMBL:Q7CJ16,NCBI_GP:CAL20255.1;Name=CAL20255.1;Note=Similar to Neisseria meningitidis shikimate dehydrogenase AroE TR:P95381 (EMBL:U82834) (269 aa) fasta scores: E(): 1.3e-08%2C 26.4%25 id in 239 aa%2C and to Deinococcus radiodurans shikimate 5-dehydrogenase%2C putative Dr0077 TR:Q9RY73 (EMBL:AE001871) (273 aa) fasta scores: E(): 0%2C 57.7%25 id in 267 aa;gbkey=CDS;inference=similar to sequence:INSDC:U82834;product=putative shikimate dehydrogenase;protein_id=CAL20255.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1834265	1834957	.	+	.	ID=id3797;Note=Pfam match to entry PF01488 Shikimate_DH%2C Shikimate / quinate 5-dehydrogenase%2C score 230.50%2C E-value 2.5e-65;gbkey=misc_feature;inference=protein motif:PF01488
AL590842.1	EMBL	gene	1835182	1835535	.	+	.	ID=gene1598;Name=YPO1611;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1611
AL590842.1	EMBL	CDS	1835182	1835535	.	+	0	ID=cds1565;Parent=gene1598;Dbxref=GOA:Q7CJ15,InterPro:IPR001310,InterPro:IPR011146,InterPro:IPR019808,UniProtKB/TrEMBL:Q7CJ15,NCBI_GP:CAL20256.1;Name=CAL20256.1;Note=Similar to Escherichia coli protein HIT-like protein YcfF SW:YCFF_ECOLI (P36950) (119 aa) fasta scores: E(): 0%2C 84.6%25 id in 117 aa%2C and to Gallus gallus protein kinase C inhibitor ChpKCI TR:Q9I882 (EMBL:AB026676) (126 aa) fasta scores: E(): 1.3e-18%2C 46.3%25 id in 108 aa;gbkey=CDS;inference=similar to sequence:INSDC:AB026676;product=conserved hypothetical protein;protein_id=CAL20256.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1835194	1835502	.	+	.	ID=id3798;Note=Pfam match to entry PF01230 HIT%2C HIT family%2C score 200.20%2C E-value 3.3e-56;gbkey=misc_feature;inference=protein motif:PF01230
AL590842.1	EMBL	sequence_feature	1835443	1835499	.	+	.	ID=id3799;Note=PS00892 HIT family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00892
AL590842.1	EMBL	gene	1835570	1835959	.	+	.	ID=gene1599;Name=ycfL;gbkey=Gene;gene=ycfL;gene_biotype=protein_coding;locus_tag=YPO1612
AL590842.1	EMBL	CDS	1835570	1835959	.	+	0	ID=cds1566;Parent=gene1599;Dbxref=InterPro:IPR010824,UniProtKB/TrEMBL:Q0WGG5,NCBI_GP:CAL20257.1;Name=CAL20257.1;Note=Similar to Escherichia coli hypothetical 14.0 kDa protein in fhuE-ndh intergenic region YcfL SW:YCFL_ECOLI (P75946) (125 aa) fasta scores: E(): 1.5e-14%2C 45.5%25 id in 110 aa%2C and to Vibrio cholerae hypothetical protein Vc1895 TR:Q9KQV3 (EMBL:AE004265) (129 aa) fasta scores: E(): 0.0016%2C 30.3%25 id in 122 aa;gbkey=CDS;gene=ycfL;inference=similar to sequence:INSDC:AE004265;product=putative lipoprotein;protein_id=CAL20257.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1835570	1835581	.	+	.	ID=id3800;Note=PS00228 Tubulin-beta mRNA autoregulation signal.;gbkey=misc_feature;gene=ycfL;inference=protein motif:ProSite:PS00228
AL590842.1	EMBL	sequence_feature	1835585	1835617	.	+	.	ID=id3801;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=ycfL;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	1836000	1836575	.	+	.	ID=gene1600;Name=YPO1613;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1613
AL590842.1	EMBL	CDS	1836000	1836575	.	+	0	ID=cds1567;Parent=gene1600;Dbxref=GOA:Q7CJ14,InterPro:IPR014094,NCBI_GP:CAL20258.1;Name=CAL20258.1;Note=Similar to Escherichia coli fibronectin-binding protein B TR:Q9R424 (EMBL:D90746) (214 aa) fasta scores: E(): 3e-25%2C 48.3%25 id in 207 aa%2C and to Escherichia coli hypothetical 22.5 kDa protein in fhue-ndh intergenic region ycfM SW:YCFM_ECOLI (P75947) (213 aa) fasta scores: E(): 3e-25%2C 48.3%25 id in 207 aa;gbkey=CDS;inference=similar to sequence:INSDC:D90746;product=putative lipoprotein;protein_id=CAL20258.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1836018	1836050	.	+	.	ID=id3802;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	1836616	1837422	.	+	.	ID=gene1601;Name=YPO1614;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1614
AL590842.1	EMBL	CDS	1836616	1837422	.	+	0	ID=cds1568;Parent=gene1601;Dbxref=GOA:Q0WGG3,InterPro:IPR002575,InterPro:IPR011009,InterPro:IPR014093,UniProtKB/TrEMBL:Q0WGG3,NCBI_GP:CAL20259.1;Name=CAL20259.1;Note=Similar to Escherichia coli hypothetical protein YcfN SW:YCFN_ECOLI (P75948) (274 aa) fasta scores: E(): 1e-26%2C 37.5%25 id in 251 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL20259.1;transl_table=11
AL590842.1	EMBL	gene	1837493	1838524	.	+	.	ID=gene1602;Name=ycfO;gbkey=Gene;gene=ycfO;gene_biotype=protein_coding;locus_tag=YPO1615
AL590842.1	EMBL	CDS	1837493	1838524	.	+	0	ID=cds1569;Parent=gene1602;Dbxref=GOA:Q8ZFS3,InterPro:IPR001764,InterPro:IPR017853,InterPro:IPR019800,InterPro:IPR022956,NCBI_GP:CAL20260.1;Name=CAL20260.1;Note=Similar to Vibrio furnissii beta-hexosaminidase Exo II SW:HEX2_VIBFU (P96157) (329 aa) fasta scores: E(): 0%2C58.6%25 id in 338 aa%2C and to Escherichia coli hypothetical 37.6 kDa protein in fhue-ndh intergenic region YcfO SW:YCFO_ECOLI (P75949) (341 aa) fasta scores: E(): 0%2C 76.3%25 id in 338 aa;gbkey=CDS;gene=ycfO;product=beta-hexosaminidase;protein_id=CAL20260.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1837517	1838368	.	+	.	ID=id3803;Note=Pfam match to entry PF00933 Glyco_hydro_3%2C Glycosyl hydrolase family 3 N terminal domain%2C score 245.90%2C E-value 5.5e-70;gbkey=misc_feature;gene=ycfO;inference=protein motif:PF00933
AL590842.1	EMBL	sequence_feature	1838192	1838245	.	+	.	ID=id3804;Note=PS00775 Glycosyl hydrolases family 3 active site.;gbkey=misc_feature;gene=ycfO;inference=protein motif:ProSite:PS00775
AL590842.1	EMBL	gene	1838652	1839194	.	+	.	ID=gene1603;Name=YPO1616;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1616
AL590842.1	EMBL	CDS	1838652	1839194	.	+	0	ID=cds1570;Parent=gene1603;Dbxref=InterPro:IPR008886,InterPro:IPR022987,InterPro:IPR029058,NCBI_GP:CAL20261.1;Name=CAL20261.1;Note=Similar to Escherichia coli hypothetical protein YcfP SW:YCFP_ECOLI (P75950) (199 aa) fasta scores: E(): 0%2C80.0%25 id in 180 aa%2C and to Vibrio cholerae hypothetical protein VC1892 TR:Q9KQV6 (EMBL:AE004265) (179 aa) fasta scores: E(): 0%2C 72.9%25 id in 177 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004265;product=conserved hypothetical protein;protein_id=CAL20261.1;transl_table=11
AL590842.1	EMBL	gene	1839569	1840873	.	+	.	ID=gene1604;Name=ndh;gbkey=Gene;gene=ndh;gene_biotype=protein_coding;locus_tag=YPO1617
AL590842.1	EMBL	CDS	1839569	1840873	.	+	0	ID=cds1571;Parent=gene1604;Dbxref=GOA:Q7CJ13,InterPro:IPR001327,InterPro:IPR013027,InterPro:IPR023753,UniProtKB/TrEMBL:Q7CJ13,NCBI_GP:CAL20262.1;Name=CAL20262.1;Note=Similar to Escherichia coli NADH dehydrogenase Ndh SW:DHNA_ECOLI (P00393) (433 aa) fasta scores: E(): 0%2C 82.2%25 id in 433 aa%2C and to Vibrio cholerae NADH dehydrogenase VC1890 TR:Q9KQV8 (EMBL:AE004264) (434 aa) fasta scores: E(): 0%2C 73.6%25 id in 428 aa;gbkey=CDS;gene=ndh;inference=similar to sequence:INSDC:AE004264;product=NADH dehydrogenase;protein_id=CAL20262.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1839590	1840516	.	+	.	ID=id3805;Note=Pfam match to entry PF00070 pyr_redox%2C Pyridine nucleotide-disulphide oxidoreductase%2C score 161.60%2C E-value 5.7e-47;gbkey=misc_feature;gene=ndh;inference=protein motif:PF00070
AL590842.1	EMBL	gene	1841044	1841238	.	+	.	ID=gene1605;Name=YPO1618;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1618
AL590842.1	EMBL	CDS	1841044	1841238	.	+	0	ID=cds1572;Parent=gene1605;Dbxref=UniProtKB/TrEMBL:Q7CJ12,NCBI_GP:CAL20263.1;Name=CAL20263.1;Note=doubtful CDS with no significant database hits. Very low G+C conent;gbkey=CDS;product=hypothetical protein;protein_id=CAL20263.1;transl_table=11
AL590842.1	EMBL	gene	1841411	1841980	.	+	.	ID=gene1606;Name=YPO1619;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1619
AL590842.1	EMBL	CDS	1841411	1841980	.	+	0	ID=cds1573;Parent=gene1606;Dbxref=UniProtKB/TrEMBL:Q7CJ11,NCBI_GP:CAL20264.1;Name=CAL20264.1;Note=No significant database hits. Similar to YPO3066 (53.0%25 identity in 166 aa overlap);gbkey=CDS;product=hypothetical protein;protein_id=CAL20264.1;transl_table=11
AL590842.1	EMBL	gene	1841988	1842401	.	+	.	ID=gene1607;Name=YPO1620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1620
AL590842.1	EMBL	CDS	1841988	1842401	.	+	0	ID=cds1574;Parent=gene1607;Dbxref=UniProtKB/TrEMBL:Q7CJ10,NCBI_GP:CAL20265.1;Name=CAL20265.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20265.1;transl_table=11
AL590842.1	EMBL	repeat_region	1842426	1843740	.	+	.	ID=id3806;Note=insertion sequence:IS285;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	1842426	1842454	.	+	.	ID=id3807;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1842497	1843705	.	+	.	ID=gene1608;Name=y1062;gbkey=Gene;gene=y1062;gene_biotype=protein_coding;gene_synonym=ypmt1.80C;locus_tag=YPO1621
AL590842.1	EMBL	CDS	1842497	1843705	.	+	0	ID=cds1575;Parent=gene1608;Dbxref=GOA:O68779,InterPro:IPR001207,UniProtKB/TrEMBL:O68779,NCBI_GP:CAL20266.1;Name=CAL20266.1;Note=Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa;gbkey=CDS;gene=y1062;inference=similar to sequence:INSDC:AF053947;product=transposase for the IS285 insertion element;protein_id=CAL20266.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1842497	1843633	.	+	.	ID=id3808;Note=Pfam match to entry PF00872 Transpo_mutator%2CTransposase%2C Mutator family%2C score 430.40%2C E-value 1.6e-125;gbkey=misc_feature;gene=y1062;inference=protein motif:PF00872
AL590842.1	EMBL	sequence_feature	1843190	1843264	.	+	.	ID=id3809;Note=PS01007 Transposases%2C Mutator family%2C signature.;gbkey=misc_feature;gene=y1062;inference=protein motif:ProSite:PS01007
AL590842.1	EMBL	INVERTED	1843712	1843740	.	-	.	ID=id3810;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	repeat_region	1844023	1845976	.	-	.	ID=id3811;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	1844023	1844050	.	+	.	ID=id3812;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1844089	1844871	.	-	.	ID=gene1609;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO1622
AL590842.1	EMBL	CDS	1844089	1844871	.	-	0	ID=cds1576;Parent=gene1609;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL20267.1;Name=CAL20267.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL20267.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1844164	1844703	.	-	.	ID=id3813;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	1844521	1844544	.	-	.	ID=id3814;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1844868	1845890	.	-	.	ID=gene1610;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO1623
AL590842.1	EMBL	CDS	1844868	1845890	.	-	0	ID=cds1577;Parent=gene1610;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL20268.1;Name=CAL20268.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL20268.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1845012	1845545	.	-	.	ID=id3815;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	sequence_feature	1845774	1845839	.	-	.	ID=id3816;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	1845783	1845866	.	-	.	ID=id3817;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	INVERTED	1845949	1845976	.	-	.	ID=id3818;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1845995	1846534	.	+	.	ID=gene1611;Name=ycfJ;gbkey=Gene;gene=ycfJ;gene_biotype=protein_coding;locus_tag=YPO1624
AL590842.1	EMBL	CDS	1845995	1846534	.	+	0	ID=cds1578;Parent=gene1611;Dbxref=GOA:Q0WGF3,InterPro:IPR008816,UniProtKB/TrEMBL:Q0WGF3,NCBI_GP:CAL20269.1;Name=CAL20269.1;Note=Similar to Escherichia coli hypothetical 18.9 kDa protein in ndh-mfd intergenic region YcfJ SW:YCFJ_ECOLI (P37796) (179 aa) fasta scores: E(): 0%2C 79.8%25 id in 178 aa%2Cand to Pseudomonas aeruginosa TR:AAG07206 (Q9HXI3) (182 aa) fasta scores: E(): 0%2C 56.8%25 id in 176 aa;gbkey=CDS;gene=ycfJ;product=putative exported protein;protein_id=CAL20269.1;transl_table=11
AL590842.1	EMBL	gene	1846773	1850219	.	-	.	ID=gene1612;Name=mfd;gbkey=Gene;gene=mfd;gene_biotype=protein_coding;locus_tag=YPO1625
AL590842.1	EMBL	CDS	1846773	1850219	.	-	0	ID=cds1579;Parent=gene1612;Dbxref=GOA:Q7CJ08,InterPro:IPR001650,InterPro:IPR003711,InterPro:IPR004576,InterPro:IPR005118,InterPro:IPR011545,InterPro:IPR014001,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CJ08,NCBI_GP:CAL20270.1;Name=CAL20270.1;Note=Similar to Escherichia coli transcription-repair coupling factor MfD SW:MFD_ECOLI (P30958) (1148 aa) fasta scores: E(): 0%2C 80.6%25 id in 1148 aa%2C and to Haemophilus influenzae transcription-repair coupling factor Mfd or Hi1258 SW:MFD_HAEIN (P45128) (1146 aa) fasta scores: E(): 0%2C 64.0%25 id in 1141 aa;gbkey=CDS;gene=mfd;product=transcription-repair coupling factor;protein_id=CAL20270.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1847499	1847753	.	-	.	ID=id3819;Note=Pfam match to entry PF00271 helicase_C%2C Helicases conserved C-terminal domain%2C score 82.60%2C E-value 8.2e-21;gbkey=misc_feature;gene=mfd;inference=protein motif:PF00271
AL590842.1	EMBL	sequence_feature	1847859	1848449	.	-	.	ID=id3820;Note=Pfam match to entry PF00270 DEAD%2C DEAD/DEAH box helicase%2C score 106.30%2C E-value 1e-32;gbkey=misc_feature;gene=mfd;inference=protein motif:PF00270
AL590842.1	EMBL	sequence_feature	1848315	1848338	.	-	.	ID=id3821;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=mfd;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1850489	1851691	.	+	.	ID=gene1613;Name=lolC;gbkey=Gene;gene=lolC;gene_biotype=protein_coding;locus_tag=YPO1626
AL590842.1	EMBL	CDS	1850489	1851691	.	+	0	ID=cds1580;Parent=gene1613;Dbxref=GOA:Q7CJ07,InterPro:IPR003838,InterPro:IPR011925,InterPro:IPR025857,UniProtKB/TrEMBL:Q7CJ07,NCBI_GP:CAL20271.1;Name=CAL20271.1;Note=Similar to Escherichia coli lipoprotein releasing system transmembrane protein LolC SW:LOLC_ECOLI (P75956) (399 aa) fasta scores: E(): 0%2C 78.5%25 id in 400 aa%2C and to Vibrio cholerae hypothetical protein Vc1884 TR:Q9KQW4 (EMBL:AE004263) (406 aa) fasta scores: E(): 0%2C 53.2%25 id in 402 aa;gbkey=CDS;gene=lolC;inference=similar to sequence:INSDC:AE004263;product=lipoprotein releasing system%2C transmembrane protein;protein_id=CAL20271.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1850561	1850629	.	+	.	ID=id3822;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=lolC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1851290	1851358	.	+	.	ID=id3823;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=lolC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1851419	1851487	.	+	.	ID=id3824;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=lolC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1851578	1851646	.	+	.	ID=id3825;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=lolC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1851684	1852388	.	+	.	ID=gene1614;Name=lolD;gbkey=Gene;gene=lolD;gene_biotype=protein_coding;locus_tag=YPO1627
AL590842.1	EMBL	CDS	1851684	1852388	.	+	0	ID=cds1581;Parent=gene1614;Dbxref=GOA:Q8ZFR4,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR011924,InterPro:IPR015854,InterPro:IPR017871,InterPro:IPR027417,NCBI_GP:CAL20272.1;Name=CAL20272.1;Note=Similar to Escherichia coli lipoprotein releasing system ATP-binding protein LolD SW:LOLD_ECOLI (P75957) (233 aa) fasta scores: E(): 0%2C 79.3%25 id in 232 aa%2C and to Escherichia coli hypothetical ABC transporter ATP-binding protein YcfV SW:YCFV_ECOLI (P75957) (233 aa) fasta scores: E(): 0%2C 79.3%25 id in 232 aa;gbkey=CDS;gene=lolD;product=lipoprotein releasing system%2C ATP-binding protein;protein_id=CAL20272.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1851789	1852349	.	+	.	ID=id3826;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 213.00%2C E-value 4.6e-60;gbkey=misc_feature;gene=lolD;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1851810	1851833	.	+	.	ID=id3827;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=lolD;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1852122	1852166	.	+	.	ID=id3828;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=lolD;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	1852385	1853635	.	+	.	ID=gene1615;Name=lolE;gbkey=Gene;gene=lolE;gene_biotype=protein_coding;locus_tag=YPO1628
AL590842.1	EMBL	CDS	1852385	1853635	.	+	0	ID=cds1582;Parent=gene1615;Dbxref=GOA:Q7CJ05,InterPro:IPR003838,InterPro:IPR011925,InterPro:IPR011926,InterPro:IPR025857,UniProtKB/TrEMBL:Q7CJ05,NCBI_GP:CAL20273.1;Name=CAL20273.1;Note=Similar to Escherichia coli lipoprotein releasing system transmembrane protein LolE SW:LOLE_ECOLI (P75958) (413 aa) fasta scores: E(): 0%2C 79.6%25 id in 411 aa;gbkey=CDS;gene=lolE;inference=protein motif:TMHMM:2.0;product=lipoprotein releasing system%2C transmembrane protein;protein_id=CAL20273.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1852457	1852525	.	+	.	ID=id3829;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=lolE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1853198	1853266	.	+	.	ID=id3830;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=lolE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1853345	1853413	.	+	.	ID=id3831;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=lolE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1853519	1853587	.	+	.	ID=id3832;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=lolE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1853654	1854424	.	+	.	ID=gene1616;Name=YPO1629;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1629
AL590842.1	EMBL	CDS	1853654	1854424	.	+	0	ID=cds1583;Parent=gene1616;Dbxref=GOA:Q0WGE8,InterPro:IPR000600,NCBI_GP:CAL20274.1;Name=CAL20274.1;Note=Similar to Escherichia coli hypothetical protein YcfX SW:YCFX_ECOLI (P75959) (303 aa) fasta scores: E(): 0%2C61.2%25 id in 255 aa%2C and to Vibrio cholerae ROK family protein VC1532 TR:Q9KRV2 (EMBL:AE004231) (302 aa) fasta scores: E(): 0%2C 55.0%25 id in 242 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004231;product=conserved hypothetical protein;protein_id=CAL20274.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1853663	1854235	.	+	.	ID=id3833;Note=Pfam match to entry PF00480 ROK%2C ROK family%2C score 196.70%2C E-value 2e-57;gbkey=misc_feature;inference=protein motif:PF00480
AL590842.1	EMBL	sequence_feature	1854041	1854124	.	+	.	ID=id3834;Note=PS01125 ROK family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01125
AL590842.1	EMBL	gene	1854618	1855454	.	+	.	ID=gene1617;Name=cobB;gbkey=Gene;gene=cobB;gene_biotype=protein_coding;locus_tag=YPO1630
AL590842.1	EMBL	CDS	1854618	1855454	.	+	0	ID=cds1584;Parent=gene1617;Dbxref=GOA:Q8ZFR1,InterPro:IPR003000,InterPro:IPR026590,InterPro:IPR026591,InterPro:IPR027546,InterPro:IPR029035,NCBI_GP:CAL20275.1;Name=CAL20275.1;Note=Similar to Salmonella typhimurium putative nicotinic acid mononucleotide:5%2C 6- dimethylbenzimidazole CobB TR:AAC78722 (EMBL:U89687) (237 aa) fasta scores: E(): 0%2C73.4%25 id in 233 aa%2C and to Escherichia coli hypothteical protein TR:P75960 (EMBL:AE000212) (279 aa) fasta scores: E(): 0%2C 73.9%25 id in 264 aa;gbkey=CDS;gene=cobB;inference=similar to sequence:INSDC:U89687;product=putative Sir2 family protein;protein_id=CAL20275.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1854753	1855274	.	+	.	ID=id3835;Note=Pfam match to entry PF02146 SIR2%2C Sir2 family%2C score 254.60%2C E-value 1.3e-72;gbkey=misc_feature;gene=cobB;inference=protein motif:PF02146
AL590842.1	EMBL	gene	1855784	1857019	.	+	.	ID=gene1618;Name=pepT;gbkey=Gene;gene=pepT;gene_biotype=protein_coding;locus_tag=YPO1631
AL590842.1	EMBL	CDS	1855784	1857019	.	+	0	ID=cds1585;Parent=gene1618;Dbxref=GOA:Q8ZFR0,InterPro:IPR001261,InterPro:IPR002933,InterPro:IPR010161,InterPro:IPR011650,NCBI_GP:CAL20276.1;Name=CAL20276.1;Note=Similar to Salmonella typhimurium peptidase T PepT SW:PEPT_SALTY (P26311) (409 aa) fasta scores: E(): 0%2C 76.5%25 id in 409 aa%2C and to Escherichia coli peptidase T PepT SW:PEPT_ECOLI (P29745) (408 aa) fasta scores: E(): 0%2C 76.9%25 id in 407 aa;gbkey=CDS;gene=pepT;product=peptidase T;protein_id=CAL20276.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1855805	1856848	.	+	.	ID=id3836;Note=Pfam match to entry PF01546 Peptidase_M20%2C Peptidase family M20/M25/M40%2C score 90.20%2C E-value 6e-25;gbkey=misc_feature;gene=pepT;inference=protein motif:PF01546
AL590842.1	EMBL	sequence_feature	1856000	1856029	.	+	.	ID=id3837;Note=PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1.;gbkey=misc_feature;gene=pepT;inference=protein motif:ProSite:PS00758
AL590842.1	EMBL	sequence_feature	1856195	1856311	.	+	.	ID=id3838;Note=PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2.;gbkey=misc_feature;gene=pepT;inference=protein motif:ProSite:PS00759
AL590842.1	EMBL	gene	1857252	1858373	.	-	.	ID=gene1619;Name=YPO1632;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1632
AL590842.1	EMBL	CDS	1857252	1858373	.	-	0	ID=cds1586;Parent=gene1619;Dbxref=InterPro:IPR003347,UniProtKB/TrEMBL:Q0WGE5,NCBI_GP:CAL20277.1;Name=CAL20277.1;Note=Similar to Escherichia coli hypothetical protein YcfD SW:YCFD_ECOLI (P27431) (373 aa) fasta scores: E(): 0%2C79.2%25 id in 371 aa%2C and to Pseudomonas aeruginosa conserved hypothetical protein PA2630 TR:AAG06018 (Q9I0K8) (389 aa) fasta scores: E(): 0%2C 36.9%25 id in 374 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL20277.1;transl_table=11
AL590842.1	EMBL	gene	1858457	1859911	.	-	.	ID=gene1620;Name=phoQ;gbkey=Gene;gene=phoQ;gene_biotype=protein_coding;locus_tag=YPO1633
AL590842.1	EMBL	CDS	1858457	1859911	.	-	0	ID=cds1587;Parent=gene1620;Dbxref=GOA:Q7CJ04,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR015014,UniProtKB/TrEMBL:Q7CJ04,NCBI_GP:CAL20278.1;Name=CAL20278.1;Note=Similar to Escherichia coli membrane bound two component sensor protein PhoQ SW:PHOQ_ECOLI (P23837) (486 aa) fasta scores: E(): 0%2C 62.1%25 id in 478 aa%2C and to Salmonella typhimurium PhoQ protein TR:Q9L3L1 (EMBL:AJ272210) (487 aa) fasta scores: E(): 0%2C 62.4%25 id in 473 aa;gbkey=CDS;gene=phoQ;inference=similar to sequence:INSDC:AJ272210;product=sensor protein kinase;protein_id=CAL20278.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1858484	1859092	.	-	.	ID=id3839;Note=Pfam match to entry PF00512 signal%2C Histidine kinase%2C score 182.80%2C E-value 5.4e-51;gbkey=misc_feature;gene=phoQ;inference=protein motif:PF00512
AL590842.1	EMBL	sequence_feature	1859132	1859338	.	-	.	ID=id3840;Note=Pfam match to entry PF00672 DUF5%2C HAMP domain%2C score 47.80%2C E-value 2.4e-10;gbkey=misc_feature;gene=phoQ;inference=protein motif:PF00672
AL590842.1	EMBL	sequence_feature	1859273	1859338	.	-	.	ID=id3841;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=phoQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1859786	1859851	.	-	.	ID=id3842;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=phoQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1859917	1860588	.	-	.	ID=gene1621;Name=phoP;gbkey=Gene;gene=phoP;gene_biotype=protein_coding;locus_tag=YPO1634
AL590842.1	EMBL	CDS	1859917	1860588	.	-	0	ID=cds1588;Parent=gene1621;Dbxref=GOA:P74992,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,UniProtKB/TrEMBL:P74992,NCBI_GP:CAL20279.1;Name=CAL20279.1;Note=Similar to the previously sequenced Yersinia pestis PhoP protein TR:P74992 (EMBL:Y08758) (223 aa) fasta scores: E(): 0%2C 100.0%25 id in 223 aa%2C to Yersinia pseudotuberculosis PhoP protein TR:P74991 (EMBL:X66587) (223 aa) fasta scores: E(): 0%2C 99.1%25 id in 223 aa%2C to Yersinia enterocolitica PhoP protein TR:O87919 (EMBL:AJ011832) (200 aa) fasta scores: E(): 0%2C 98.5%25 id in 200 aa%2C and to Escherichia coli transcriptional regulatory protein PhoP SW:PHOP_ECOLI (P23836) (223 aa) fasta scores: E(): 0%2C 81.1%25 id in 222 aa;gbkey=CDS;gene=phoP;inference=similar to sequence:INSDC:Y08758;product=response regulator protein;protein_id=CAL20279.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1859938	1860153	.	-	.	ID=id3843;Note=Pfam match to entry PF00486 trans_reg_C%2CTranscriptional regulatory protein%2C C terminal%2C score 85.00%2C E-value 4.2e-24;gbkey=misc_feature;gene=phoP;inference=protein motif:PF00486
AL590842.1	EMBL	sequence_feature	1860253	1860588	.	-	.	ID=id3844;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 123.10%2C E-value 5.3e-33;gbkey=misc_feature;gene=phoP;inference=protein motif:PF00072
AL590842.1	EMBL	gene	1860799	1861422	.	-	.	ID=gene1622;Name=YPO1635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1635
AL590842.1	EMBL	CDS	1860799	1861422	.	-	0	ID=cds1589;Parent=gene1622;Dbxref=GOA:Q7CJ02,InterPro:IPR011250,InterPro:IPR017690,InterPro:IPR027385,UniProtKB/TrEMBL:Q7CJ02,NCBI_GP:CAL20280.1;Name=CAL20280.1;Note=weak similarity to Burkholderia cepacia Opcp1 TR:Q45106 (EMBL:D63823) (361 aa) fasta scores: E(): 0.081%2C25.4%25 id in 201 aa%2C and to Neisseria gonorrhoeae opacity protein Opa68 precursor SW:OP68_NEIGO (Q04881) (238 aa) fasta scores: E(): 0.16%2C 28.3%25 id in 138 aa;gbkey=CDS;inference=similar to sequence:INSDC:D63823;product=putative lipoprotein;protein_id=CAL20280.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1861378	1861410	.	-	.	ID=id3845;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	1861610	1862980	.	-	.	ID=gene1623;Name=purB;gbkey=Gene;gene=purB;gene_biotype=protein_coding;locus_tag=YPO1636
AL590842.1	EMBL	CDS	1861610	1862980	.	-	0	ID=cds1590;Parent=gene1623;Dbxref=GOA:Q0WGE1,InterPro:IPR000362,InterPro:IPR004769,InterPro:IPR008948,InterPro:IPR013539,InterPro:IPR020557,InterPro:IPR022761,InterPro:IPR024083,UniProtKB/TrEMBL:Q0WGE1,NCBI_GP:CAL20281.1;Name=CAL20281.1;Note=Similar to Escherichia coli adenylosuccinate lyase PurB SW:PUR8_ECOLI (P25739) (456 aa) fasta scores: E(): 0%2C88.6%25 id in 456 aa%2C and to Vibrio cholerae adenylosuccinate lyase Vc1126 TR:Q9KSY0 (EMBL:AE004193) (456 aa) fasta scores: E(): 0%2C 78.5%25 id in 456 aa;gbkey=CDS;gene=purB;inference=similar to sequence:INSDC:AE004193;product=adenylosuccinate lyase;protein_id=CAL20281.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1861673	1862941	.	-	.	ID=id3846;Note=Pfam match to entry PF00206 lyase_1%2C Lyase%2C score 412.70%2C E-value 3.4e-120;gbkey=misc_feature;gene=purB;inference=protein motif:PF00206
AL590842.1	EMBL	sequence_feature	1862072	1862101	.	-	.	ID=id3847;Note=PS00163 Fumarate lyases signature.;gbkey=misc_feature;gene=purB;inference=protein motif:ProSite:PS00163
AL590842.1	EMBL	gene	1863041	1863667	.	-	.	ID=gene1624;Name=YPO1637;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1637
AL590842.1	EMBL	CDS	1863041	1863667	.	-	0	ID=cds1591;Parent=gene1624;Dbxref=GOA:Q8ZFQ6,InterPro:IPR007451,NCBI_GP:CAL20282.1;Name=CAL20282.1;Note=Similar to Escherichia coli hypothetical protein YcfC SW:YCFC_ECOLI (P25746) (213 aa) fasta scores: E(): 0%2C75.5%25 id in 208 aa%2C and to Vibrio cholerae hypothetical protein VC1127 TR:Q9KSX9 (EMBL:AE004193) (205 aa) fasta scores: E(): 0%2C 55.3%25 id in 206 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004193;product=conserved hypothetical protein;protein_id=CAL20282.1;transl_table=11
AL590842.1	EMBL	gene	1863725	1864840	.	-	.	ID=gene1625;Name=asuE;gbkey=Gene;gene=asuE;gene_biotype=protein_coding;gene_synonym=trmU;locus_tag=YPO1638
AL590842.1	EMBL	CDS	1863725	1864840	.	-	0	ID=cds1592;Parent=gene1625;Dbxref=GOA:Q8ZFQ5,InterPro:IPR004506,InterPro:IPR014729,InterPro:IPR023382,NCBI_GP:CAL20283.1;Name=CAL20283.1;Note=Similar to to Escherichia coli tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU or AsuE SW:TRMU_ECOLI (P25745) (368 aa) fasta scores: E(): 0%2C 86.6%25 id in 367 aa and Bacillus subtilis probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU SW:TRMU_BACSU (O35020) (370 aa) fasta scores: E(): 0%2C54.0%25 id in 367 aa;gbkey=CDS;gene=asuE;product=tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase;protein_id=CAL20283.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1863764	1863799	.	-	.	ID=id3848;Note=PS00070 Aldehyde dehydrogenases cysteine active site.;gbkey=misc_feature;gene=asuE;inference=protein motif:ProSite:PS00070
AL590842.1	EMBL	gene	1865027	1865473	.	-	.	ID=gene1626;Name=YPO1639;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1639
AL590842.1	EMBL	CDS	1865027	1865473	.	-	0	ID=cds1593;Parent=gene1626;Dbxref=GOA:Q7CJ01,InterPro:IPR000086,InterPro:IPR015797,InterPro:IPR020084,InterPro:IPR020476,UniProtKB/TrEMBL:Q7CJ01,NCBI_GP:CAL20284.1;Name=CAL20284.1;Note=Similar to Escherichia coli hypothetical protein YmfB SW:YMFB_ECOLI (P75965) (153 aa) fasta scores: E(): 0%2C75.0%25 id in 148 aa%2C to Pseudomonas hydrogenothermophila MutT-like protein TR:Q9WXC6 (EMBL:AB018741) (159 aa) fasta scores: E(): 3.4e-18%2C 43.1%25 id in 144 aa%2C and to Xylella fastidiosa phosphohydrolase XF1441 TR:Q9PDD8 (EMBL:AE003974) (152 aa) fasta scores: E(): 1.2e-16%2C 43.3%25 id in 141 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE003974;product=conserved hypothetical protein;protein_id=CAL20284.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1865075	1865464	.	-	.	ID=id3849;Note=Pfam match to entry PF00293 mutT%2C Bacterial mutT protein%2C score 94.70%2C E-value 1.8e-24;gbkey=misc_feature;inference=protein motif:PF00293
AL590842.1	EMBL	sequence_feature	1865309	1865368	.	-	.	ID=id3850;Note=PS00893 mutT domain signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00893
AL590842.1	EMBL	gene	1865466	1866092	.	-	.	ID=gene1627;Name=ymfC;gbkey=Gene;gene=ymfC;gene_biotype=protein_coding;locus_tag=YPO1640
AL590842.1	EMBL	CDS	1865466	1866092	.	-	0	ID=cds1594;Parent=gene1627;Dbxref=GOA:Q8ZFQ3,InterPro:IPR000748,InterPro:IPR006145,InterPro:IPR018496,InterPro:IPR020103,NCBI_GP:CAL20285.1;Name=CAL20285.1;Note=Similar to Escherichia coli hypothetical 24.9 kDa protein in trmU-icdA intergenic region YmfC SW:YMFC_ECOLI (P75966) (217 aa) fasta scores: E(): 0%2C 73.4%25 id in 207 aa%2Cand to Vibrio cholerae pseudouridine synthase family I protein Vc1140 TR:Q9KSW6 (EMBL:AE004194) (290 aa) fasta scores: E(): 0%2C 64.4%25 id in 205 aa;gbkey=CDS;gene=ymfC;inference=similar to sequence:INSDC:AE004194;product=putative pseudouridine synthase;protein_id=CAL20285.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1865565	1866005	.	-	.	ID=id3851;Note=Pfam match to entry PF00849 PseudoU_synth_2%2C RNA pseudouridylate synthase%2C score 82.60%2C E-value 8.2e-21;gbkey=misc_feature;gene=ymfC;inference=protein motif:PF00849
AL590842.1	EMBL	sequence_feature	1865853	1865897	.	-	.	ID=id3852;Note=PS01149 Rsu family of pseudouridine synthase signature.;gbkey=misc_feature;gene=ymfC;inference=protein motif:ProSite:PS01149
AL590842.1	EMBL	gene	1866223	1867476	.	+	.	ID=gene1628;Name=icd;gbkey=Gene;gene=icd;gene_biotype=protein_coding;gene_synonym=icdA,icdE;locus_tag=YPO1641
AL590842.1	EMBL	CDS	1866223	1867476	.	+	0	ID=cds1595;Parent=gene1628;Dbxref=GOA:Q0WGD6,InterPro:IPR001804,InterPro:IPR004439,InterPro:IPR019818,InterPro:IPR024084,UniProtKB/TrEMBL:Q0WGD6,NCBI_GP:CAL20286.1;Name=CAL20286.1;Note=Similar to Escherichia coli isocitrate dehydrogenase [NADP] SW:IDH_ECOLI (P08200) (416 aa) fasta scores: E(): 0%2C90.2%25 id in 417 aa%2C and to Salmonella enterica I isocitrate dehydrogenase Icd TR:O30811 (EMBL:AF017605) (388 aa) fasta scores: E(): 0%2C 92.7%25 id in 386 aa;gbkey=CDS;gene=icd;inference=similar to sequence:INSDC:AF017605;product=isocitrate dehydrogenase [NADP];protein_id=CAL20286.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1866307	1867461	.	+	.	ID=id3853;Note=Pfam match to entry PF00180 isodh%2C Isocitrate and isopropylmalate dehydrogenases%2C score 529.20%2C E-value 2.6e-157;gbkey=misc_feature;gene=icd;inference=protein motif:PF00180
AL590842.1	EMBL	sequence_feature	1867132	1867191	.	+	.	ID=id3854;Note=PS00470 Isocitrate and isopropylmalate dehydrogenases signature.;gbkey=misc_feature;gene=icd;inference=protein motif:ProSite:PS00470
AL590842.1	EMBL	gene	1867622	1868665	.	-	.	ID=gene1629;Name=cscR;gbkey=Gene;gene=cscR;gene_biotype=protein_coding;locus_tag=YPO1642
AL590842.1	EMBL	CDS	1867622	1868665	.	-	0	ID=cds1596;Parent=gene1629;Dbxref=GOA:Q7CJ00,InterPro:IPR000843,InterPro:IPR001761,InterPro:IPR010982,InterPro:IPR028082,UniProtKB/TrEMBL:Q7CJ00,NCBI_GP:CAL20287.1;Name=CAL20287.1;Note=Similar to Escherichia coli sucrose operon repressor CscR SW:CSCR_ECOLI (P40715) (331 aa) fasta scores: E(): 0%2C60.0%25 id in 330 aa%2C and to Salmonella typhimurium CytR TR:Q9XDC7 (EMBL:AF085239) (341 aa) fasta scores: E(): 1.8e-20%2C 28.2%25 id in 340 aa;gbkey=CDS;gene=cscR;inference=similar to sequence:INSDC:AF085239;product=sucrose operon repressor LacI-family;protein_id=CAL20287.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1867751	1868488	.	-	.	ID=id3855;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 169.70%2C E-value 5e-47;gbkey=misc_feature;gene=cscR;inference=protein motif:PF00532
AL590842.1	EMBL	sequence_feature	1868585	1868665	.	-	.	ID=id3856;Note=Pfam match to entry PF00356 lacI%2C Bacterial regulatory proteins%2C lacI family%2C score 35.10%2C E-value 2e-08;gbkey=misc_feature;gene=cscR;inference=protein motif:PF00356
AL590842.1	EMBL	sequence_feature	1868597	1868662	.	-	.	ID=id3857;Note=Predicted helix-turn-helix motif with score 1538 (+4.43 SD) at aa 2-23%2C sequence VSLKEVANLASVSLMTASRAIN;gbkey=misc_feature;gene=cscR
AL590842.1	EMBL	sequence_feature	1868600	1868656	.	-	.	ID=id3858;Note=PS00356 Bacterial regulatory proteins%2C lacI family signature.;gbkey=misc_feature;gene=cscR;inference=protein motif:ProSite:PS00356
AL590842.1	EMBL	gene	1868941	1869201	.	-	.	ID=gene1630;Name=YPO1643;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1643
AL590842.1	EMBL	CDS	1868941	1869201	.	-	0	ID=cds1597;Parent=gene1630;Dbxref=UniProtKB/TrEMBL:Q7CIZ9,NCBI_GP:CAL20288.1;Name=CAL20288.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20288.1;transl_table=11
AL590842.1	EMBL	gene	1869321	1870901	.	-	.	ID=gene1631;Name=aer;gbkey=Gene;gene=aer;gene_biotype=protein_coding;gene_synonym=air;locus_tag=YPO1644
AL590842.1	EMBL	CDS	1869321	1870901	.	-	0	ID=cds1598;Parent=gene1631;Dbxref=GOA:Q0WGD3,InterPro:IPR000014,InterPro:IPR001610,InterPro:IPR003660,InterPro:IPR004089,InterPro:IPR004090,UniProtKB/TrEMBL:Q0WGD3,NCBI_GP:CAL20289.1;Name=CAL20289.1;Note=Similar to Escherichia coli aerotaxis receptor Aer or Air SW:AER_ECOLI (P50466) (506 aa) fasta scores: E(): 0%2C47.1%25 id in 514 aa%2C and to Escherichia coli methyl-accepting chemotaxis protein II Tar or CheM SW:MCP2_ECOLI (P07017) (553 aa) fasta scores: E(): 0%2C 43.3%25 id in 360 aa;gbkey=CDS;gene=aer;product=putative methyl-accepting chemotaxis protein;protein_id=CAL20289.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1869639	1869821	.	-	.	ID=id3859;Note=Pfam match to entry PF00015 MCPsignal%2CMethyl-accepting chemotaxis protein (MCP) signaling domain%2Cscore 131.10%2C E-value 4.7e-36;gbkey=misc_feature;gene=aer;inference=protein motif:PF00015
AL590842.1	EMBL	sequence_feature	1870107	1870316	.	-	.	ID=id3860;Note=Pfam match to entry PF00672 DUF5%2C HAMP domain%2C score 50.00%2C E-value 5.3e-11;gbkey=misc_feature;gene=aer;inference=protein motif:PF00672
AL590842.1	EMBL	sequence_feature	1870560	1870655	.	-	.	ID=id3861;Note=Pfam match to entry PF00785 PAC%2C PAC motif%2C score 29.20%2C E-value 1.1e-06;gbkey=misc_feature;gene=aer;inference=protein motif:PF00785
AL590842.1	EMBL	sequence_feature	1870683	1870832	.	-	.	ID=id3862;Note=Pfam match to entry PF00989 PAS%2C PAS domain%2C score 23.00%2C E-value 9.1e-05;gbkey=misc_feature;gene=aer;inference=protein motif:PF00989
AL590842.1	EMBL	gene	1871821	1872678	.	-	.	ID=gene1632;Name=YPO1645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1645
AL590842.1	EMBL	CDS	1871821	1872678	.	-	0	ID=cds1599;Parent=gene1632;Dbxref=InterPro:IPR008030,InterPro:IPR016040,UniProtKB/TrEMBL:Q7CIZ8,NCBI_GP:CAL20290.1;Name=CAL20290.1;Note=Similar to Escherichia coli hypothetical protein YtfG SW:YTFG_ECOLI (P39315) (286 aa) fasta scores: E(): 0%2C65.6%25 id in 279 aa%2C and to Xylella fastidiosa hypothetical protein XF0241 TR:Q9PGQ7 (EMBL:AE003878) (293 aa) fasta scores: E(): 0%2C 57.6%25 id in 283 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE003878;product=conserved hypothetical protein;protein_id=CAL20290.1;transl_table=11
AL590842.1	EMBL	gene	1872838	1873221	.	+	.	ID=gene1633;Name=YPO1646;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1646
AL590842.1	EMBL	CDS	1872838	1873221	.	+	0	ID=cds1600;Parent=gene1633;Dbxref=InterPro:IPR002577,InterPro:IPR011991,UniProtKB/TrEMBL:Q0WGD1,NCBI_GP:CAL20291.1;Name=CAL20291.1;Note=Similar to Escherichia coli hypothetical protein YtfH SW:YTFH_ECOLI (P39316) (126 aa) fasta scores: E(): 2.2e-29%2C 62.3%25 id in 122 aa%2C and to Streptomyces coelicolor hypothetical protein SC1F2.10 TR:O86547 (EMBL:AL031350) (135 aa) fasta scores: E(): 1.3e-15%2C 38.6%25 id in 127 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031350;product=conserved hypothetical protein;protein_id=CAL20291.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1872943	1873194	.	+	.	ID=id3863;Note=Pfam match to entry PF01638 DUF24%2C Protein of unknown function DUF24%2C score 104.70%2C E-value 1.8e-27;gbkey=misc_feature;inference=protein motif:PF01638
AL590842.1	EMBL	pseudogene	1873255	1873452	.	+	.	ID=gene1634;Name=YPO1647;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO1647;pseudo=true
AL590842.1	EMBL	CDS	1873255	1873452	.	+	0	ID=cds1601;Parent=gene1634;Note=Similar to many cytochrome B fragments found in various genetic backgrounds: Urocampus carinirostris cytochrome B (fragment) CytB TR:Q9MI83 (EMBL:AF155468) (100 aa) fasta scores: E(): 1.5%2C 32.3%25 id in 65 aa%2C and to Apistogramma caetei cytochrome B (fragment) CytB TR:CAC16341 (EMBL:AJ297670) (115 aa) fasta scores: E(): 2%2C34.3%25 id in 67 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ297670;product=putative cytochrome B (fragment);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	1873753	1875078	.	+	.	ID=gene1635;Name=YPO1648;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1648
AL590842.1	EMBL	CDS	1873753	1875078	.	+	0	ID=cds1602;Parent=gene1635;Dbxref=GOA:Q7CIZ7,InterPro:IPR000560,InterPro:IPR029033,UniProtKB/TrEMBL:Q7CIZ7,NCBI_GP:CAL20293.1;Name=CAL20293.1;Note=Similar to Escherichia coli periplasmic phosphoanhydride phosphohydrolase precursor SW:PPA_ECOLI (P07102) (432 aa) fasta scores: E(): 0%2C 45.2%25 id in 427 aa%2Cand to Escherichia coli glucose-1-phosphatase precursor agP SW:AGP_ECOLI (P19926) (413 aa) fasta scores: E(): 1.1e-17%2C30.3%25 id in 432 aa;gbkey=CDS;product=probable histidine acid phosphatase;protein_id=CAL20293.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1873858	1873902	.	+	.	ID=id3864;Note=PS00616 Histidine acid phosphatases phosphohistidine signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00616
AL590842.1	EMBL	sequence_feature	1873867	1874850	.	+	.	ID=id3865;Note=Pfam match to entry PF00328 acid_phosphat%2C Histidine acid phosphatase%2C score 96.70%2C E-value 4.3e-28;gbkey=misc_feature;inference=protein motif:PF00328
AL590842.1	EMBL	gene	1875380	1875595	.	-	.	ID=gene1636;Name=YPO1649;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1649
AL590842.1	EMBL	CDS	1875380	1875595	.	-	0	ID=cds1603;Parent=gene1636;Dbxref=InterPro:IPR017704,UniProtKB/TrEMBL:Q7CIZ6,NCBI_GP:CAL20294.1;Name=CAL20294.1;Note=Similar to Escherichia coli hypothetical protein YdfZ SW:YDFZ_ECOLI (P76153) (67 aa) fasta scores: E(): 8e-06%2C 41.3%25 id in 63 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL20294.1;transl_table=11
AL590842.1	EMBL	gene	1875886	1876788	.	-	.	ID=gene1637;Name=YPO1650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1650
AL590842.1	EMBL	CDS	1875886	1876788	.	-	0	ID=cds1604;Parent=gene1637;Dbxref=InterPro:IPR021266,UniProtKB/TrEMBL:Q0WGC8,NCBI_GP:CAL20295.1;Name=CAL20295.1;Note=Weakly similar to Mycobacterium tuberculosis phosphoribosylamine--glycine ligase PurD or RV0772 or MTCY369.17 SW:PUR2_MYCTU (P71827) (422 aa) fasta scores: E(): 3.8%2C 24.2%25 id in 165 aa;gbkey=CDS;product=hypothetical protein;protein_id=CAL20295.1;transl_table=11
AL590842.1	EMBL	gene	1876877	1877326	.	-	.	ID=gene1638;Name=YPO1651;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1651
AL590842.1	EMBL	CDS	1876877	1877326	.	-	0	ID=cds1605;Parent=gene1638;Dbxref=GOA:Q7CIZ5,InterPro:IPR000485,InterPro:IPR011008,InterPro:IPR011991,InterPro:IPR019887,InterPro:IPR019888,UniProtKB/TrEMBL:Q7CIZ5,NCBI_GP:CAL20296.1;Name=CAL20296.1;Note=Similar to Bacillus subtilis transcriptional regulator LrpB SW:LRPB_BACSU (P96653) (149 aa) fasta scores: E(): 6.8e-08%2C 27.1%25 id in 118 aa%2C and to Pseudomonas aeruginosa TR:AAG05965 (EMBL:AE004686) (145 aa) fasta scores: E(): 3.5e-28%2C 53.5%25 id in 142 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004686;product=AsnC-family transcriptional regulatory protein;protein_id=CAL20296.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1876952	1877254	.	-	.	ID=id3866;Note=Pfam match to entry PF01037 ASNC_trans_reg%2C AsnC family%2C score 48.30%2C E-value 1.7e-10;gbkey=misc_feature;inference=protein motif:PF01037
AL590842.1	EMBL	sequence_feature	1877210	1877275	.	-	.	ID=id3867;Note=Predicted helix-turn-helix motif with score 1081 (+2.87 SD) at aa 18-39%2C sequence TSLKDLSQKVNLSSPSTSERLR;gbkey=misc_feature
AL590842.1	EMBL	gene	1877817	1878350	.	-	.	ID=gene1639;Name=ylaC;gbkey=Gene;gene=ylaC;gene_biotype=protein_coding;locus_tag=YPO1652
AL590842.1	EMBL	CDS	1877817	1878350	.	-	0	ID=cds1606;Parent=gene1639;Dbxref=InterPro:IPR019713,UniProtKB/TrEMBL:Q7CIZ4,NCBI_GP:CAL20297.1;Name=CAL20297.1;Note=Similar to Escherichia coli hypothetical 19.8 kDa protein in tesB-hha intergenic region YlaC SW:YLAC_ECOLI (P77523) (169 aa) fasta scores: E(): 7.8e-19%2C 34.4%25 id in 151 aa;gbkey=CDS;gene=ylaC;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL20297.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1878117	1878173	.	-	.	ID=id3868;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=ylaC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1878186	1878242	.	-	.	ID=id3869;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=ylaC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1878633	1879643	.	-	.	ID=gene1640;Name=YPO1653;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1653
AL590842.1	EMBL	CDS	1878633	1879643	.	-	0	ID=cds1607;Parent=gene1640;Dbxref=GOA:Q0WGC5,InterPro:IPR002085,InterPro:IPR011032,InterPro:IPR013149,InterPro:IPR013154,InterPro:IPR014189,InterPro:IPR016040,UniProtKB/TrEMBL:Q0WGC5,NCBI_GP:CAL20298.1;Name=CAL20298.1;Note=Similar to Cavia porcellus quinone oxidoreductase SW:QOR_CAVPO (P11415) (329 aa) fasta scores: E(): 5.5e-28%2C33.3%25 id in 327 aa%2C and to Pseudomonas aeruginosa probable oxidoreductase TR:AAG04526 (Q9I4J8) (328 aa) fasta scores: E(): 0%2C 62.3%25 id in 326 aa;gbkey=CDS;product=probable Zinc-binding dehydrogenase;protein_id=CAL20298.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1878636	1879574	.	-	.	ID=id3870;Note=Pfam match to entry PF00107 adh_zinc%2C Zinc-binding dehydrogenases%2C score 266.80%2C E-value 2.9e-76;gbkey=misc_feature;inference=protein motif:PF00107
AL590842.1	EMBL	gene	1880050	1883232	.	-	.	ID=gene1641;Name=lacZ;gbkey=Gene;gene=lacZ;gene_biotype=protein_coding;locus_tag=YPO1654
AL590842.1	EMBL	CDS	1880050	1883232	.	-	0	ID=cds1608;Parent=gene1641;Dbxref=GOA:Q7CIZ3,InterPro:IPR004199,InterPro:IPR006101,InterPro:IPR006102,InterPro:IPR006103,InterPro:IPR006104,InterPro:IPR008979,InterPro:IPR011013,InterPro:IPR013781,InterPro:IPR013812,InterPro:IPR014718,InterPro:IPR017853,InterPro:IPR023230,InterPro:IPR023232,InterPro:IPR023933,NCBI_GP:CAL20299.1;Name=CAL20299.1;Note=Similar to Escherichia coli beta-galactosidase LacZ SW:BGAL_ECOLI (P00722) (1023 aa) fasta scores: E(): 0%2C62.5%25 id in 1046 aa%2C and to Enterobacter cloacae beta-galactosidase lacZ SW:BGAL_ENTCL (Q47077) (1028 aa) fasta scores: E(): 0%2C 60.4%25 id in 1046 aa;gbkey=CDS;gene=lacZ;product=beta-galactosidase;protein_id=CAL20299.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1881325	1883067	.	-	.	ID=id3871;Note=Pfam match to entry PF00703 Glyco_hydro_2%2C Glycosyl hydrolases family 2%2C score 1058.30%2C E-value 0;gbkey=misc_feature;gene=lacZ;inference=protein motif:PF00703
AL590842.1	EMBL	sequence_feature	1881802	1881846	.	-	.	ID=id3872;Note=PS00608 Glycosyl hydrolases family 2 acid/base catalyst.;gbkey=misc_feature;gene=lacZ;inference=protein motif:ProSite:PS00608
AL590842.1	EMBL	sequence_feature	1881955	1882032	.	-	.	ID=id3873;Note=PS00719 Glycosyl hydrolases family 2 signature 1.;gbkey=misc_feature;gene=lacZ;inference=protein motif:ProSite:PS00719
AL590842.1	EMBL	gene	1883773	1883985	.	+	.	ID=gene1642;Name=cspC;gbkey=Gene;gene=cspC;gene_biotype=protein_coding;gene_synonym=msmB;locus_tag=YPO1655
AL590842.1	EMBL	CDS	1883773	1883985	.	+	0	ID=cds1609;Parent=gene1642;Dbxref=GOA:Q74UE0,InterPro:IPR002059,InterPro:IPR011129,InterPro:IPR012156,InterPro:IPR012340,InterPro:IPR019844,UniProtKB/TrEMBL:Q74UE0,NCBI_GP:CAL20300.1;Name=CAL20300.1;Note=Similar to Escherichia coli cold shock-like protein CspC or MsmB SW:CSPC_ECOLI (P36996) (68 aa) fasta scores: E(): 4.9e-23%2C 84.8%25 id in 66 aa%2C and to Yersinia enterocolitica major cold shock protein Cspa2 TR:Q9RIF1 (EMBL:U82821) (70 aa) fasta scores: E(): 4.2e-22%2C 80.0%25 id in 70 aa;gbkey=CDS;gene=cspC;inference=similar to sequence:INSDC:U82821;product=cold shock protein;protein_id=CAL20300.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1883782	1883982	.	+	.	ID=id3874;Note=Pfam match to entry PF00313 CSD%2C 'Cold-shock' DNA-binding domain%2C score 153.20%2C E-value 4.4e-42;gbkey=misc_feature;gene=cspC;inference=protein motif:PF00313
AL590842.1	EMBL	sequence_feature	1883824	1883883	.	+	.	ID=id3875;Note=PS00352 'Cold-shock' DNA-binding domain signature.;gbkey=misc_feature;gene=cspC;inference=protein motif:ProSite:PS00352
AL590842.1	EMBL	gene	1884200	1884391	.	+	.	ID=gene1643;Name=YPO1656;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1656
AL590842.1	EMBL	CDS	1884200	1884391	.	+	0	ID=cds1610;Parent=gene1643;Dbxref=InterPro:IPR019717,NCBI_GP:CAL20301.1;Name=CAL20301.1;Note=Similar to Escherichia coli DsrB protein or B1952 SW:DSRB_ECOLI (P40678) (62 aa) fasta scores: E(): 7.2e-20%2C83.1%25 id in 59 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL20301.1;transl_table=11
AL590842.1	EMBL	pseudogene	1884574	1886275	.	-	.	ID=gene1644;Name=cheM;gbkey=Gene;gene=cheM;gene_biotype=pseudogene;gene_synonym=tar;locus_tag=YPO1657;pseudo=true
AL590842.1	EMBL	CDS	1884574	1886275	.	-	0	ID=cds1611;Parent=gene1644;Note=Similar to Escherichia coli methyl-accepting chemotaxis protein III Trg or B1421 SW:MCP3_ECOLI (P05704) (546 aa) fasta scores: E(): 2.9e-98%2C 58.052%25 id in 534 aa%2Cand to Salmonella typhimurium methyl-accepting chemotaxis protein II Tar SW:MCP2_SALTY (P02941) (553 aa) fasta scores: E(): 1.3e-68%2C 45.826%25 id in 563 aa. There is a frameshift around codon 420. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=cheM;product=methyl-accepting chemotaxis protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	CDS	1884574	1886239	.	-	0	ID=cds1612;Parent=gene1644;Note=This CDS appears to have a frameshift mutation following codon 409. The full length CDS is similar to Escherichia coli methyl-accepting chemotaxis protein II Tar or CheM SW:MCP2_ECOLI (P07017) (553 aa) fasta scores: E(): 0%2C 44.2%25 id in 563 aa.;gbkey=CDS;gene=cheM;product=methyl-accepting chemotaxis protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	1885010	1885156	.	-	.	ID=id3876;Note=Pfam match to entry PF00015 MCPsignal%2CMethyl-accepting chemotaxis protein (MCP) signaling domain%2Cscore 103.30%2C E-value 4.3e-28;gbkey=misc_feature;gene=cheM;inference=protein motif:PF00015
AL590842.1	EMBL	sequence_feature	1885289	1885357	.	-	.	ID=id3877;Note=PS00538 Bacterial chemotaxis sensory transducers signature.;gbkey=misc_feature;gene=cheM;inference=protein motif:ProSite:PS00538
AL590842.1	EMBL	sequence_feature	1885442	1885651	.	-	.	ID=id3878;Note=Pfam match to entry PF00672 DUF5%2C HAMP domain%2C score 50.30%2C E-value 4.3e-11;gbkey=misc_feature;gene=cheM;inference=protein motif:PF00672
AL590842.1	EMBL	gene	1885598	1885663	.	-	.	ID=gene1645;Name=YPO1658;gbkey=Gene;gene_biotype=other;locus_tag=YPO1658
AL590842.1	EMBL	sequence_feature	1885598	1885663	.	-	.	ID=id3879;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1886135	1886200	.	-	.	ID=id3880;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1886135	1886200	.	-	.	ID=gene1646;Name=YPO1658;gbkey=Gene;gene_biotype=other;locus_tag=YPO1658
AL590842.1	EMBL	gene	1886912	1887082	.	+	.	ID=gene1647;Name=YPO1659;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1659
AL590842.1	EMBL	CDS	1886912	1887082	.	+	0	ID=cds1613;Parent=gene1647;Dbxref=UniProtKB/TrEMBL:Q74UD8,NCBI_GP:CAL20304.1;Name=CAL20304.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20304.1;transl_table=11
AL590842.1	EMBL	gene	1887422	1888132	.	+	.	ID=gene1648;Name=mgtC;gbkey=Gene;gene=mgtC;gene_biotype=protein_coding;locus_tag=YPO1660
AL590842.1	EMBL	CDS	1887422	1888132	.	+	0	ID=cds1614;Parent=gene1648;Dbxref=GOA:Q7CIZ2,InterPro:IPR003416,UniProtKB/TrEMBL:Q7CIZ2,NCBI_GP:CAL20305.1;Name=CAL20305.1;Note=Similar to Salmonella typhimurium Mg(2+) transport ATPase protein C MgtC%2C important for macrophage survival SW:ATMC_SALTY (P22037) (231 aa) fasta scores: E(): 0%2C 63.1%25 id in 233 aa%2C and to Pseudomonas aeruginosa conserved hypothetical protein TR:AAG08023 (Q9HVF9) (234 aa) fasta scores: E(): 0%2C 54.1%25 id in 229 aa;gbkey=CDS;gene=mgtC;inference=protein motif:TMHMM:2.0;product=Mg(2+) transport ATPase protein C;protein_id=CAL20305.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1887431	1887499	.	+	.	ID=id3881;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=mgtC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1887461	1887847	.	+	.	ID=id3882;Note=Pfam match to entry PF02308 MgtC%2C %2C score 251.60%2CE-value 1.1e-71;gbkey=misc_feature;gene=mgtC;inference=protein motif:PF02308
AL590842.1	EMBL	sequence_feature	1887536	1887595	.	+	.	ID=id3883;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=mgtC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1887608	1887667	.	+	.	ID=id3884;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=mgtC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1887704	1887772	.	+	.	ID=id3885;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=mgtC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1888533	1891232	.	+	.	ID=gene1649;Name=mgtB;gbkey=Gene;gene=mgtB;gene_biotype=protein_coding;locus_tag=YPO1661
AL590842.1	EMBL	CDS	1888533	1891232	.	+	0	ID=cds1615;Parent=gene1649;Dbxref=GOA:Q7CIZ1,InterPro:IPR001757,InterPro:IPR004014,InterPro:IPR006068,InterPro:IPR006415,InterPro:IPR008250,InterPro:IPR018303,InterPro:IPR023214,InterPro:IPR023298,InterPro:IPR023299,UniProtKB/TrEMBL:Q7CIZ1,NCBI_GP:CAL20306.1;Name=CAL20306.1;Note=Similar to Salmonella typhimurium Mg2+ transport ATPase protein B%2C MgtB important for macrophage survival TR:Q9S682 (EMBL:AF106566) (908 aa) fasta scores: E(): 0%2C72.4%25 id in 901 aa%2C and to Pseudomonas aeruginosa Mg2+ transport ATPase TR:AAG08210 (Q9HUY5) (903 aa) fasta scores: E(): 0%2C 74.8%25 id in 894 aa;gbkey=CDS;gene=mgtB;inference=similar to sequence:INSDC:AF106566;product=Mg(2+) transport ATPase protein B;protein_id=CAL20306.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1888749	1888808	.	+	.	ID=id3886;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=mgtB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1888851	1888910	.	+	.	ID=id3887;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=mgtB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1888866	1889615	.	+	.	ID=id3888;Note=Pfam match to entry PF00122 E1-E2_ATPase%2C E1-E2 ATPase%2C score 266.10%2C E-value 1.2e-79;gbkey=misc_feature;gene=mgtB;inference=protein motif:PF00122
AL590842.1	EMBL	sequence_feature	1889388	1889456	.	+	.	ID=id3889;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=mgtB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1889484	1889552	.	+	.	ID=id3890;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=mgtB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1889643	1889663	.	+	.	ID=id3891;Note=PS00154 E1-E2 ATPases phosphorylation site.;gbkey=misc_feature;gene=mgtB;inference=protein motif:ProSite:PS00154
AL590842.1	EMBL	sequence_feature	1890660	1890728	.	+	.	ID=id3892;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=mgtB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1890840	1890908	.	+	.	ID=id3893;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=mgtB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1891014	1891082	.	+	.	ID=id3894;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=mgtB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1891125	1891184	.	+	.	ID=id3895;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=mgtB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	pseudogene	1892411	1892771	.	+	.	ID=gene1650;Name=flhD;gbkey=Gene;gene=flhD;gene_biotype=pseudogene;locus_tag=YPO1662;pseudo=true
AL590842.1	EMBL	CDS	1892411	1892771	.	+	0	ID=cds1616;Parent=gene1650;Note=Similar to Yersinia enterocolitica flagellar biosynthesis regulatory protein FlhD SW:FLHD_YEREN (O86046) (119 aa) fasta scores: E(): 0%2C 95.8%25 id in 119 aa%2C and to Serratia marcescens flagellar transcriptional activator FlhD SW:FLHD_SERMA (O85806) (119 aa) fasta scores: E(): 0%2C84.9%25 id in 119 aa. This CDS appears to have a frameshift following codon 83. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=flhD;product=flagellar biosynthesis regulatory protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	1892772	1893356	.	+	.	ID=gene1651;Name=flhC;gbkey=Gene;gene=flhC;gene_biotype=protein_coding;locus_tag=YPO1663
AL590842.1	EMBL	CDS	1892772	1893356	.	+	0	ID=cds1617;Parent=gene1651;Dbxref=GOA:Q7CIZ0,InterPro:IPR007944,UniProtKB/TrEMBL:Q7CIZ0,NCBI_GP:CAL20308.1;Name=CAL20308.1;Note=Similar to the previously sequenced Yersinia pestis flagellum biosynthesis transcription activator FlhC TR:Q9S474 (EMBL:AF160510) (193 aa) fasta scores: E(): 0%2C100.0%25 id in 193 aa%2C and to Yersinia enterocolitica flagellar transcriptional activator FlhC SW:FLHC_YEREN (O86047) (193 aa) fasta scores: E(): 0%2C 95.9%25 id in 193 aa;gbkey=CDS;gene=flhC;inference=similar to sequence:INSDC:AF160510;product=flagellum biosynthesis transcription activator;protein_id=CAL20308.1;transl_table=11
AL590842.1	EMBL	gene	1893561	1894448	.	+	.	ID=gene1652;Name=motA;gbkey=Gene;gene=motA;gene_biotype=protein_coding;locus_tag=YPO1664
AL590842.1	EMBL	CDS	1893561	1894448	.	+	0	ID=cds1618;Parent=gene1652;Dbxref=GOA:Q7CIY9,InterPro:IPR000540,InterPro:IPR002898,InterPro:IPR022522,UniProtKB/TrEMBL:Q7CIY9,NCBI_GP:CAL20309.1;Name=CAL20309.1;Note=Similar to Escherichia coli chemotaxis MotA protein SW:MOTA_ECOLI (P09348) (295 aa) fasta scores: E(): 0%2C 81.0%25 id in 295 aa%2C and to Salmonella typhimurium chemotaxis MotA protein SW:MOTA_SALTY (P55891) (295 aa) fasta scores: E(): 0%2C 82.0%25 id in 295 aa;gbkey=CDS;gene=motA;inference=protein motif:TMHMM:2.0;product=chemotaxis MotA protein;protein_id=CAL20309.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1893564	1893632	.	+	.	ID=id3896;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=motA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1893660	1893713	.	+	.	ID=id3897;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=motA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1894071	1894130	.	+	.	ID=id3898;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=motA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1894173	1894241	.	+	.	ID=id3899;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=motA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1894173	1894226	.	+	.	ID=id3900;Note=PS01307 Flagellar motor protein motA family signature.;gbkey=misc_feature;gene=motA;inference=protein motif:ProSite:PS01307
AL590842.1	EMBL	gene	1894445	1895728	.	+	.	ID=gene1653;Name=motB;gbkey=Gene;gene=motB;gene_biotype=protein_coding;locus_tag=YPO1665
AL590842.1	EMBL	CDS	1894445	1895728	.	+	0	ID=cds1619;Parent=gene1653;Dbxref=InterPro:IPR006665,InterPro:IPR025713,UniProtKB/TrEMBL:Q7CIY8,NCBI_GP:CAL20310.1;Name=CAL20310.1;Note=Similar to Escherichia coli chemotaxis MotB protein SW:MOTB_ECOLI (P09349) (308 aa) fasta scores: E(): 0%2C 68.8%25 id in 311 aa%2C and to Salmonella typhimurium chemotaxis MotB protein SW:MOTB_SALTY (P55892) (309 aa) fasta scores: E(): 0%2C 67.9%25 id in 312 aa. Note that this CDS is 119 aa longer%2Cat the C-terminal end%2C than the MotB protein;gbkey=CDS;gene=motB;product=chemotaxis MotB protein;protein_id=CAL20310.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1894505	1894573	.	+	.	ID=id3901;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=motB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1894919	1895215	.	+	.	ID=id3902;Note=Pfam match to entry PF00691 OmpA%2C OmpA family%2C score 98.70%2C E-value 1.2e-25;gbkey=misc_feature;gene=motB;inference=protein motif:PF00691
AL590842.1	EMBL	gene	1895739	1897910	.	+	.	ID=gene1654;Name=cheA;gbkey=Gene;gene=cheA;gene_biotype=protein_coding;locus_tag=YPO1666
AL590842.1	EMBL	CDS	1895739	1897910	.	+	0	ID=cds1620;Parent=gene1654;Dbxref=GOA:Q7CIY7,InterPro:IPR002545,InterPro:IPR003594,InterPro:IPR004105,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR008207,InterPro:IPR009082,InterPro:IPR015162,UniProtKB/TrEMBL:Q7CIY7,NCBI_GP:CAL20311.1;Name=CAL20311.1;Note=Similar to Escherichia coli chemotaxis regulatory protein CheA SW:CHEA_ECOLI (P07363) (654 aa) fasta scores: E(): 0%2C 69.8%25 id in 716 aa%2C and to Salmonella typhimurium chemotaxis protein CheA SW:CHEA_SALTY (P09384) (671 aa) fasta scores: E(): 0%2C 72.2%25 id in 716 aa. This CDS contains internal insertions relative to that of E.coli and S. typhimurium;gbkey=CDS;gene=cheA;product=chemotaxis protein CheA;protein_id=CAL20311.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1895751	1896065	.	+	.	ID=id3903;Note=Pfam match to entry PF01627 Hpt%2C Hpt domain%2C score 156.20%2C E-value 5.6e-43;gbkey=misc_feature;gene=cheA;inference=protein motif:PF01627
AL590842.1	EMBL	sequence_feature	1895772	1895798	.	+	.	ID=id3904;Note=PS00039 DEAD-box subfamily ATP-dependent helicases signature.;gbkey=misc_feature;gene=cheA;inference=protein motif:ProSite:PS00039
AL590842.1	EMBL	sequence_feature	1897467	1897871	.	+	.	ID=id3905;Note=Pfam match to entry PF01584 CheW%2C CheW-like domain%2Cscore 121.10%2C E-value 2.1e-32;gbkey=misc_feature;gene=cheA;inference=protein motif:PF01584
AL590842.1	EMBL	gene	1898073	1898570	.	+	.	ID=gene1655;Name=cheW;gbkey=Gene;gene=cheW;gene_biotype=protein_coding;locus_tag=YPO1667
AL590842.1	EMBL	CDS	1898073	1898570	.	+	0	ID=cds1621;Parent=gene1655;Dbxref=GOA:Q7CIY6,InterPro:IPR002545,UniProtKB/TrEMBL:Q7CIY6,NCBI_GP:CAL20312.1;Name=CAL20312.1;Note=Similar to Escherichia coli chemotaxis regulatory protein CheW SW:CHEW_ECOLI (P07365) (167 aa) fasta scores: E(): 0%2C 84.0%25 id in 163 aa%2C and to Salmonella typhimurium chemotaxis protein CheW SW:CHEW_SALTY (P06110) (167 aa) fasta scores: E(): 0%2C 84.4%25 id in 160 aa;gbkey=CDS;gene=cheW;product=chemotaxis protein CheW;protein_id=CAL20312.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1898118	1898537	.	+	.	ID=id3906;Note=Pfam match to entry PF01584 CheW%2C CheW-like domain%2Cscore 191.50%2C E-value 1.3e-53;gbkey=misc_feature;gene=cheW;inference=protein motif:PF01584
AL590842.1	EMBL	gene	1898862	1900097	.	-	.	ID=gene1656;Name=yihN;gbkey=Gene;gene=yihN;gene_biotype=protein_coding;locus_tag=YPO1668
AL590842.1	EMBL	CDS	1898862	1900097	.	-	0	ID=cds1622;Parent=gene1656;Dbxref=GOA:Q7CIY5,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q7CIY5,NCBI_GP:CAL20313.1;Name=CAL20313.1;Note=Similar to Escherichia coli hypothetical 46.3 kDa protein in glnA-rbn intergenic region yihN SW:YIHN_ECOLI (P32135) (421 aa) fasta scores: E(): 0%2C 48.5%25 id in 406 aa%2Cand to the previously sequenced Yersinia pestis hypothetical protein TR:Q9ZC42 (EMBL:AL031866) (409 aa) fasta scores: E(): 6.4e-07%2C 23.6%25 id in 406 aa. Also similar to several membrane transport proteins.;gbkey=CDS;gene=yihN;inference=similar to sequence:INSDC:AL031866;product=putative membrane protein;protein_id=CAL20313.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1898895	1898951	.	-	.	ID=id3907;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yihN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1898997	1899062	.	-	.	ID=id3908;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yihN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1899102	1899167	.	-	.	ID=id3909;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yihN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1899183	1899248	.	-	.	ID=id3910;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yihN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1899309	1899365	.	-	.	ID=id3911;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yihN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1899381	1899446	.	-	.	ID=id3912;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yihN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1899540	1899605	.	-	.	ID=id3913;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yihN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1899636	1899701	.	-	.	ID=id3914;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yihN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1899741	1899806	.	-	.	ID=id3915;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yihN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1899819	1899884	.	-	.	ID=id3916;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yihN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1899906	1899971	.	-	.	ID=id3917;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yihN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1900011	1900076	.	-	.	ID=id3918;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yihN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1900110	1900487	.	-	.	ID=gene1657;Name=YPO1669;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1669
AL590842.1	EMBL	CDS	1900110	1900487	.	-	0	ID=cds1623;Parent=gene1657;Dbxref=GOA:Q0WGB2,InterPro:IPR006056,InterPro:IPR006175,InterPro:IPR013813,UniProtKB/TrEMBL:Q0WGB2,NCBI_GP:CAL20314.1;Name=CAL20314.1;Note=Similar to Salmonella typhimurium YjgF TR:Q9X445 (EMBL:AF095578) (128 aa) fasta scores: E(): 1.1e-21%2C 54.5%25 id in 121 aa%2C and to Escherichia coli protein YjgF SW:YJGF_ECOLI (P39330) (127 aa) fasta scores: E(): 8e-22%2C55.4%25 id in 121 aa. Similar to YPO3590 (55.4%25 identity in 121 aa overlap). In S. typhimurium YjgF mutants do not require the pentose phosphate pathway for the function of the alternative pyrimidine biosynthetic pathway. J Bacteriol 1998%2C 180(24):6519-28;gbkey=CDS;inference=similar to sequence:INSDC:AF095578;product=YjgF-family lipoprotein;protein_id=CAL20314.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1900116	1900475	.	-	.	ID=id3919;Note=Pfam match to entry PF01042 UPF0076%2C Domain of unknown function UPF0076%2C score 188.80%2C E-value 8.9e-53;gbkey=misc_feature;inference=protein motif:PF01042
AL590842.1	EMBL	sequence_feature	1900398	1900430	.	-	.	ID=id3920;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	1900484	1901470	.	-	.	ID=gene1658;Name=YPO1670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1670
AL590842.1	EMBL	CDS	1900484	1901470	.	-	0	ID=cds1624;Parent=gene1658;Dbxref=InterPro:IPR013022,UniProtKB/TrEMBL:Q7CIY4,NCBI_GP:CAL20315.1;Name=CAL20315.1;Note=Similar to Escherichia coli hypothetical protein YihM SW:YIHM_ECOLI (P32134) (326 aa) fasta scores: E(): 1.1e-05%2C 21.2%25 id in 312 aa%2C and to Streptomyces coelicolor hypothetical protein SCF55.01c TR:Q9RJR3 (EMBL:AL132991) (232 aa) fasta scores: E(): 8.5e-09%2C 27.1%25 id in 192 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL132991;product=conserved hypothetical protein;protein_id=CAL20315.1;transl_table=11
AL590842.1	EMBL	gene	1901648	1902325	.	+	.	ID=gene1659;Name=YPO1671;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1671
AL590842.1	EMBL	CDS	1901648	1902325	.	+	0	ID=cds1625;Parent=gene1659;Dbxref=GOA:Q7CIY3,InterPro:IPR013559,UniProtKB/TrEMBL:Q7CIY3,NCBI_GP:CAL20316.1;Name=CAL20316.1;Note=Similar to Haemophilus influenzae hypothetical protein HI0575 SW:YHEO_HAEIN (P44761) (221 aa) fasta scores: E(): 7.4e-21%2C 32.1%25 id in 212 aa%2C and to Escherichia coli hypothetical protein YheO SW:YHEO_ECOLI (P45533) (240 aa) fasta scores: E(): 6.2e-18%2C 32.0%25 id in 219 aa;gbkey=CDS;product=putative DNA-binding protein;protein_id=CAL20316.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1902230	1902295	.	+	.	ID=id3921;Note=Predicted helix-turn-helix motif with score 1592 (+4.61 SD) at aa 195-216%2C sequence VTNKIVSASLGISPVTIYKHLR;gbkey=misc_feature
AL590842.1	EMBL	gene	1902800	1906606	.	+	.	ID=gene1660;Name=YPO1672;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1672
AL590842.1	EMBL	CDS	1902800	1906606	.	+	0	ID=cds1626;Parent=gene1660;Dbxref=GOA:Q0WGA9,InterPro:IPR005546,InterPro:IPR006315,InterPro:IPR006626,InterPro:IPR011050,InterPro:IPR012332,UniProtKB/TrEMBL:Q0WGA9,NCBI_GP:CAL20317.1;Name=CAL20317.1;Note=Similar to Bordetella pertussis BapA protein TR:CAC14165 (EMBL:AJ277632) (903 aa) fasta scores: E(): 0%2C32.6%25 id in 915 aa%2C to Escherichia coli YchA protein TR:Q9JMS3 (EMBL:AP001918) (1371 aa) fasta scores: E(): 8.4e-25%2C 24.7%25 id in 1300 aa%2C and to the previously sequenced Yersinia pestis YapE protein TR:CAC14224 (EMBL:AJ277628) (1072 aa) fasta scores: E(): 1.5e-18%2C 23.9%25 id in 1160 aa. Similar to YPO0765 (82.4%25 identity in 1206 aa overlap) and YPO0309 (81.1%25 identity in 1199 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AP001918;product=conserved hypothetical protein;protein_id=CAL20317.1;transl_table=11
AL590842.1	EMBL	gene	1907134	1910010	.	+	.	ID=gene1661;Name=YPO1673;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1673
AL590842.1	EMBL	CDS	1907134	1910010	.	+	0	ID=cds1627;Parent=gene1661;Dbxref=InterPro:IPR014600,InterPro:IPR019286,UniProtKB/TrEMBL:Q7CIY2,NCBI_GP:CAL20318.1;Name=CAL20318.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein TR:AAG08499 (EMBL:AE004924) (1201 aa) fasta scores: E(): 6.7e-08%2C 25.1%25 id in 828 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004924;product=putative integral membrane protein;protein_id=CAL20318.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1907146	1907214	.	+	.	ID=id3922;Note=one of 25 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1907668	1907721	.	+	.	ID=id3923;Note=one of 25 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1907764	1907817	.	+	.	ID=id3924;Note=one of 25 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1907836	1907904	.	+	.	ID=id3925;Note=one of 25 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1907947	1908015	.	+	.	ID=id3926;Note=one of 25 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1908049	1908117	.	+	.	ID=id3927;Note=one of 25 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1908160	1908219	.	+	.	ID=id3928;Note=one of 25 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1908238	1908306	.	+	.	ID=id3929;Note=one of 25 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1908349	1908417	.	+	.	ID=id3930;Note=one of 25 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1908436	1908489	.	+	.	ID=id3931;Note=one of 25 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1908502	1908570	.	+	.	ID=id3932;Note=one of 25 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1908583	1908651	.	+	.	ID=id3933;Note=one of 25 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1908679	1908738	.	+	.	ID=id3934;Note=one of 25 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1908757	1908825	.	+	.	ID=id3935;Note=one of 25 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1908904	1908972	.	+	.	ID=id3936;Note=one of 25 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1908991	1909044	.	+	.	ID=id3937;Note=one of 25 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1909087	1909155	.	+	.	ID=id3938;Note=one of 25 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1909189	1909248	.	+	.	ID=id3939;Note=one of 25 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1909291	1909359	.	+	.	ID=id3940;Note=one of 25 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1909420	1909473	.	+	.	ID=id3941;Note=one of 25 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1909501	1909569	.	+	.	ID=id3942;Note=one of 25 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1909603	1909671	.	+	.	ID=id3943;Note=one of 25 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1909714	1909782	.	+	.	ID=id3944;Note=one of 25 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1909801	1909860	.	+	.	ID=id3945;Note=one of 25 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1909870	1909929	.	+	.	ID=id3946;Note=one of 25 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1910079	1910780	.	+	.	ID=gene1662;Name=YPO1674;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1674
AL590842.1	EMBL	CDS	1910079	1910780	.	+	0	ID=cds1628;Parent=gene1662;Dbxref=UniProtKB/TrEMBL:Q7CIY1,NCBI_GP:CAL20319.1;Name=CAL20319.1;Note=Similar to Escherichia coli hypothetical 24.8 kDa protein in ibpa-gyrb intergenic region yidX SW:YIDX_ECOLI (P31461) (223 aa) fasta scores: E(): 2.5e-09%2C 32.0%25 id in 169 aa%2C and to Enterococcus faecium mevalonate kinase mvak1 TR:AAG02445 (EMBL:AF290095) (314 aa) fasta scores: E(): 9.5%2C 29.3%25 id in 150 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF290095;product=putative lipoprotein;protein_id=CAL20319.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1910136	1910168	.	+	.	ID=id3947;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	1910706	1910774	.	+	.	ID=id3948;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1911021	1912694	.	+	.	ID=gene1663;Name=cheD;gbkey=Gene;gene=cheD;gene_biotype=protein_coding;locus_tag=YPO1675
AL590842.1	EMBL	CDS	1911021	1912694	.	+	0	ID=cds1629;Parent=gene1663;Dbxref=GOA:Q7CIY0,InterPro:IPR003122,InterPro:IPR003660,InterPro:IPR004089,InterPro:IPR004090,InterPro:IPR004091,UniProtKB/TrEMBL:Q7CIY0,NCBI_GP:CAL20320.1;Name=CAL20320.1;Note=Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD or B4355 SW:MCP1_ECOLI (P02942) (551 aa) fasta scores: E(): 0%2C 67.3%25 id in 557 aa%2Cand to Enterobacter aerogenes methyl-accepting chemotaxis serine transducer Tse SW:MCPS_ENTAE (P21822) (557 aa) fasta scores: E(): 0%2C 69.8%25 id in 559 aa;gbkey=CDS;gene=cheD;inference=protein motif:TMHMM:2.0;product=methyl-accepting chemotaxis protein;protein_id=CAL20320.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1911039	1911107	.	+	.	ID=id3949;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=cheD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1911150	1911566	.	+	.	ID=id3950;Note=Pfam match to entry PF02203 TarH%2C Tar ligand binding domain homologues%2C score 145.80%2C E-value 7.6e-40;gbkey=misc_feature;gene=cheD;inference=protein motif:PF02203
AL590842.1	EMBL	sequence_feature	1911591	1911659	.	+	.	ID=id3951;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=cheD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1911606	1911815	.	+	.	ID=id3952;Note=Pfam match to entry PF00672 DUF5%2C HAMP domain%2C score 66.20%2C E-value 6.9e-16;gbkey=misc_feature;gene=cheD;inference=protein motif:PF00672
AL590842.1	EMBL	sequence_feature	1911900	1911968	.	+	.	ID=id3953;Note=PS00538 Bacterial chemotaxis sensory transducers signature.;gbkey=misc_feature;gene=cheD;inference=protein motif:ProSite:PS00538
AL590842.1	EMBL	sequence_feature	1912101	1912283	.	+	.	ID=id3954;Note=Pfam match to entry PF00015 MCPsignal%2CMethyl-accepting chemotaxis protein (MCP) signaling domain%2Cscore 132.70%2C E-value 1.7e-36;gbkey=misc_feature;gene=cheD;inference=protein motif:PF00015
AL590842.1	EMBL	pseudogene	1912878	1914488	.	+	.	ID=gene1664;Name=YPO1676;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO1676;pseudo=true
AL590842.1	EMBL	CDS	1912878	1914488	.	+	0	ID=cds1630;Parent=gene1664;Note=Similar to Enterobacter aerogenes methyl-accepting chemotaxis aspartate transducer Tas SW:MCPD_ENTAE (P21823) (512 aa) fasta scores: E(): 0%2C 63.9%25 id in 523 aa%2C and to Escherichia coli methyl-accepting chemotaxis protein IV Tap SW:MCP4_ECOLI (P07018) (533 aa) fasta scores: E(): 0%2C 56.6%25 id in 516 aa%2C and to E. coli methyl-accepting chemotaxis protein I SW:MCP1_ECOLI (P02942) (551 aa) fasta scores: E(): 0%2C 54.1%25 id in 529 aa%2C and to Escherichia coli methyl-accepting chemotaxis protein II Tar or CheM SW:MCP2_ECOLI (P07017) (553 aa) fasta scores: E(): 0%2C 51.5%25 id in 518 aa%2C and to Escherichia coli methyl-accepting chemotaxis protein III Trg SW:MCP3_ECOLI (P05704) (546 aa) fasta scores: E(): 0%2C 45.8%25 id in 518 aa. This CDS contains a stop codon at position 406. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=methyl-accepting chemotaxis protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	1912905	1912973	.	+	.	ID=id3955;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1913007	1913417	.	+	.	ID=id3956;Note=Pfam match to entry PF02203 TarH%2C Tar ligand binding domain homologues%2C score 115.60%2C E-value 9.2e-31;gbkey=misc_feature;inference=protein motif:PF02203
AL590842.1	EMBL	sequence_feature	1913442	1913510	.	+	.	ID=id3957;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1913463	1913666	.	+	.	ID=id3958;Note=Pfam match to entry PF00672 DUF5%2C HAMP domain%2C score 49.10%2C E-value 9.8e-11;gbkey=misc_feature;inference=protein motif:PF00672
AL590842.1	EMBL	sequence_feature	1913751	1913819	.	+	.	ID=id3959;Note=PS00538 Bacterial chemotaxis sensory transducers signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00538
AL590842.1	EMBL	sequence_feature	1913952	1914092	.	+	.	ID=id3960;Note=Pfam match to entry PF00015 MCPsignal%2CMethyl-accepting chemotaxis protein (MCP) signaling domain%2Cscore 98.30%2C E-value 1.1e-26;gbkey=misc_feature;inference=protein motif:PF00015
AL590842.1	EMBL	gene	1914661	1915533	.	+	.	ID=gene1665;Name=cheR;gbkey=Gene;gene=cheR;gene_biotype=protein_coding;gene_synonym=cheX;locus_tag=YPO1678
AL590842.1	EMBL	CDS	1914661	1915533	.	+	0	ID=cds1631;Parent=gene1665;Dbxref=GOA:Q0WGA5,InterPro:IPR000780,InterPro:IPR022641,InterPro:IPR022642,InterPro:IPR026024,InterPro:IPR029063,UniProtKB/TrEMBL:Q0WGA5,NCBI_GP:CAL20322.1;Name=CAL20322.1;Note=Similar to Escherichia coli chemotaxis protein methyltransferase CheR SW:CHER_ECOLI (P07364) (286 aa) fasta scores: E(): 0%2C 71.7%25 id in 283 aa%2C and to Salmonella typhimurium chemotaxis protein methyltransferase CheR SW:CHER_SALTY (P07801) (288 aa) fasta scores: E(): 0%2C 72.9%25 id in 284 aa;gbkey=CDS;gene=cheR;product=chemotaxis protein methyltransferase;protein_id=CAL20322.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1914763	1915521	.	+	.	ID=id3961;Note=Pfam match to entry PF01739 CheR%2C CheR methyltransferase%2C score 376.80%2C E-value 2.2e-109;gbkey=misc_feature;gene=cheR;inference=protein motif:PF01739
AL590842.1	EMBL	gene	1915533	1916582	.	+	.	ID=gene1666;Name=cheB;gbkey=Gene;gene=cheB;gene_biotype=protein_coding;locus_tag=YPO1679
AL590842.1	EMBL	CDS	1915533	1916582	.	+	0	ID=cds1632;Parent=gene1666;Dbxref=GOA:Q8ZFM0,InterPro:IPR000673,InterPro:IPR001789,InterPro:IPR008248,InterPro:IPR011006,NCBI_GP:CAL20323.1;Name=CAL20323.1;Note=Similar to Escherichia coli protein-glutamate methylesterase CheB SW:CHEB_ECOLI (P07330) (349 aa) fasta scores: E(): 0%2C 84.5%25 id in 349 aa%2C and to Salmonella typhimurium protein-glutamate methylesterase CheB SW:CHEB_SALTY (P04042) (349 aa) fasta scores: E(): 0%2C 83.7%25 id in 349 aa;gbkey=CDS;gene=cheB;product=protein-glutamate methylesterase;protein_id=CAL20323.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1915542	1915886	.	+	.	ID=id3962;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 111.70%2C E-value 1.4e-29;gbkey=misc_feature;gene=cheB;inference=protein motif:PF00072
AL590842.1	EMBL	sequence_feature	1916004	1916552	.	+	.	ID=id3963;Note=Pfam match to entry PF01339 CheB_methylest%2C CheB methylesterase%2C score 422.60%2C E-value 3.6e-123;gbkey=misc_feature;gene=cheB;inference=protein motif:PF01339
AL590842.1	EMBL	gene	1916683	1917072	.	+	.	ID=gene1667;Name=cheY;gbkey=Gene;gene=cheY;gene_biotype=protein_coding;locus_tag=YPO1680
AL590842.1	EMBL	CDS	1916683	1917072	.	+	0	ID=cds1633;Parent=gene1667;Dbxref=GOA:Q8D0P1,InterPro:IPR001789,InterPro:IPR011006,NCBI_GP:CAL20324.1;Name=CAL20324.1;Note=Similar to Escherichia coli chemotaxis protein CheY SW:CHEY_ECOLI (P06143) (128 aa) fasta scores: E(): 0%2C 90.6%25 id in 128 aa%2C and to Salmonella typhimurium chemotaxis protein chey CheY SW:CHEY_SALTY (P06657) (128 aa) fasta scores: E(): 0%2C 89.8%25 id in 128 aa;gbkey=CDS;gene=cheY;product=chemotaxis protein CheY;protein_id=CAL20324.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1916698	1917042	.	+	.	ID=id3964;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 154.50%2C E-value 1.8e-42;gbkey=misc_feature;gene=cheY;inference=protein motif:PF00072
AL590842.1	EMBL	gene	1917082	1917726	.	+	.	ID=gene1668;Name=cheZ;gbkey=Gene;gene=cheZ;gene_biotype=protein_coding;locus_tag=YPO1681
AL590842.1	EMBL	CDS	1917082	1917726	.	+	0	ID=cds1634;Parent=gene1668;Dbxref=GOA:Q7CIX9,InterPro:IPR007439,NCBI_GP:CAL20325.1;Name=CAL20325.1;Note=Similar to Escherichia coli chemotaxis protein CheZ SW:CHEZ_ECOLI (P07366) (214 aa) fasta scores: E(): 0%2C 79.3%25 id in 208 aa%2C and to Salmonella typhimurium chemotaxis protein CheZ SW:CHEZ_SALTY (P07800) (214 aa) fasta scores: E(): 0%2C 79.3%25 id in 208 aa;gbkey=CDS;gene=cheZ;product=chemotaxis protein CheZ;protein_id=CAL20325.1;transl_table=11
AL590842.1	EMBL	gene	1918040	1918159	.	-	.	ID=gene1669;Name=YPO1682;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1682
AL590842.1	EMBL	CDS	1918040	1918159	.	-	0	ID=cds1635;Parent=gene1669;Dbxref=UniProtKB/TrEMBL:Q7CIX8,NCBI_GP:CAL20326.1;Name=CAL20326.1;Note=doubtful CDS with no significant database hits. Weakly similar to Equus caballus transferrin TR:Q9TUP2 (EMBL:AF168417) (61 aa) fasta scores: E(): 3.6%2C 39.4%25 id in 33 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF168417;product=hypothetical protein;protein_id=CAL20326.1;transl_table=11
AL590842.1	EMBL	gene	1918291	1919055	.	+	.	ID=gene1670;Name=YPO1683;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1683
AL590842.1	EMBL	CDS	1918291	1919055	.	+	0	ID=cds1636;Parent=gene1670;Dbxref=GOA:Q7CIX7,InterPro:IPR002477,InterPro:IPR002502,UniProtKB/TrEMBL:Q7CIX7,NCBI_GP:CAL20327.1;Name=CAL20327.1;Note=Similar to Escherichia coli probable N-acetylmuramoyl-L-alanine amidase YbjR B0867 SW:YBJR_ECOLI (P75820) (276 aa) fasta scores: E(): 1.1e-32%2C 43.9%25 id in 253 aa and Pseudomonas aeruginosa hypothetical protein TR:AAG04196 (EMBL:AE004516) (255 aa) fasta scores: E(): 0%2C60.1%25 id in 253 aa. Similar to YPO1715 (48.0%25 identity in 256 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AE004516;product=probable N-acetylmuramoyl-L-alanine amidase;protein_id=CAL20327.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1918294	1918785	.	+	.	ID=id3965;Note=Pfam match to entry PF01510 Amidase_2%2CN-acetylmuramoyl-L-alanine amidase%2C score 16.80%2C E-value 0.00011;gbkey=misc_feature;inference=protein motif:PF01510
AL590842.1	EMBL	pseudogene	1919412	1922043	.	+	.	ID=gene1671;Name=YPO1684;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO1684;pseudo=true
AL590842.1	EMBL	CDS	1919412	1922043	.	+	0	ID=cds1637;Parent=gene1671;Note=Similar to the C-terminal parts of: Xylella fastidiosa surface protein Xf1981 TR:Q9PC04 (EMBL:AE004017) (1190 aa) fasta scores: E(): 0%2C 37.0%25 id in 816 aa%2C and to Xylella fastidiosa surface protein Xf1529 TR:Q9PD50 (EMBL:AE003982) (2059 aa) fasta scores: E(): 0%2C 32.3%25 id in 914 aa%2C and to Salmonella typhi SapB protein TR:CAC14217 (EMBL:AJ277623) (1107 aa) fasta scores: E(): 2.6e-28%2C 30.7%25 id in 953 aa. This CDS appears to have a frameshift mutation following codon 701. The frameshift occurs within a homopolymeric tract of 9G. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=similar to sequence:INSDC:AJ277623;product=putative membrane protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	1919496	1919564	.	+	.	ID=id3966;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1922143	1923096	.	+	.	ID=gene1672;Name=YPO1686;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1686
AL590842.1	EMBL	CDS	1922143	1923096	.	+	0	ID=cds1638;Parent=gene1672;Dbxref=UniProtKB/TrEMBL:Q7CIX6,NCBI_GP:CAL20329.1;Name=CAL20329.1;Note=Some similarity to the C-terminal part of Canine adenovirus type 2 DNA Polymerase Pol SW:DPOL_ADECT (P87553) (1150 aa) fasta scores: E(): 6.1%2C 28.5%25 id in 172 aa. Similar to YPO0901 (61.0%25 identity in 354 aa overlap);gbkey=CDS;product=putative exported protein;protein_id=CAL20329.1;transl_table=11
AL590842.1	EMBL	gene	1923715	1924944	.	-	.	ID=gene1673;Name=YPO1687;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1687
AL590842.1	EMBL	CDS	1923715	1924944	.	-	0	ID=cds1639;Parent=gene1673;Dbxref=GOA:Q8ZFL4,InterPro:IPR000821,InterPro:IPR001608,InterPro:IPR009006,InterPro:IPR011079,InterPro:IPR020622,InterPro:IPR029066,NCBI_GP:CAL20330.1;Name=CAL20330.1;Note=Similar to Vibrio cholerae putative alanine racemase Vc1312 TR:Q9KSE5 (EMBL:AE004211) (428 aa) fasta scores: E(): 0%2C 44.1%25 id in 408 aa%2C and to Synechocystis sp alanine racemase AlR or Slr0827 SW:ALR_SYNY3 (P54918) (400 aa) fasta scores: E(): 7.5e-24%2C 28.7%25 id in 401 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004211;product=putative alanine racemase;protein_id=CAL20330.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1923778	1924503	.	-	.	ID=id3967;Note=Pfam match to entry PF00842 Ala_racemase%2C Alanine racemase%2C score 94.90%2C E-value 4.9e-25;gbkey=misc_feature;inference=protein motif:PF00842
AL590842.1	EMBL	sequence_feature	1924888	1924920	.	-	.	ID=id3968;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	1926119	1926367	.	+	.	ID=gene1674;Name=YPO1688;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1688
AL590842.1	EMBL	CDS	1926119	1926367	.	+	0	ID=cds1640;Parent=gene1674;Dbxref=UniProtKB/TrEMBL:Q7CIX5,NCBI_GP:CAL20331.1;Name=CAL20331.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20331.1;transl_table=11
AL590842.1	EMBL	gene	1926760	1928016	.	+	.	ID=gene1675;Name=YPO1689;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1689
AL590842.1	EMBL	CDS	1926760	1928016	.	+	0	ID=cds1641;Parent=gene1675;Dbxref=GOA:Q7CIX4,InterPro:IPR002641,InterPro:IPR016035,UniProtKB/TrEMBL:Q7CIX4,NCBI_GP:CAL20332.1;Name=CAL20332.1;Note=Weak similarity to Bacillus subtilis hypothetical 32.9 kDa protein in gcvt-spoiiiaa intergenic region YqhO SW:YQHO_BACSU (P54513) (291 aa) fasta scores: E(): 0.31%2C26.2%25 id in 248 aa%2C and to Caenorhabditis elegans hypothetical protein Y73b6bl.Z TR:AAG23484 (EMBL:AC084197) (546 aa) fasta scores: E(): 0.45%2C 24.0%25 id in 262 aa;gbkey=CDS;inference=similar to sequence:INSDC:AC084197;product=putative lipoprotein;protein_id=CAL20332.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1926796	1926828	.	+	.	ID=id3969;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	1928171	1928404	.	+	.	ID=gene1676;Name=YPO1690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1690
AL590842.1	EMBL	CDS	1928171	1928404	.	+	0	ID=cds1642;Parent=gene1676;Dbxref=UniProtKB/TrEMBL:Q74UB2,NCBI_GP:CAL20333.1;Name=CAL20333.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20333.1;transl_table=11
AL590842.1	EMBL	repeat_region	1928873	1930826	.	-	.	ID=id3970;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	1928873	1928900	.	+	.	ID=id3971;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1928939	1929721	.	-	.	ID=gene1677;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO1691
AL590842.1	EMBL	CDS	1928939	1929721	.	-	0	ID=cds1643;Parent=gene1677;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL20334.1;Name=CAL20334.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL20334.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1929014	1929553	.	-	.	ID=id3972;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	1929371	1929394	.	-	.	ID=id3973;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1929718	1930740	.	-	.	ID=gene1678;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO1692
AL590842.1	EMBL	CDS	1929718	1930740	.	-	0	ID=cds1644;Parent=gene1678;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL20335.1;Name=CAL20335.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL20335.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1929862	1930395	.	-	.	ID=id3974;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	sequence_feature	1930624	1930689	.	-	.	ID=id3975;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	1930633	1930716	.	-	.	ID=id3976;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	INVERTED	1930799	1930826	.	-	.	ID=id3977;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1931147	1931536	.	+	.	ID=gene1679;Name=YPO1693;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1693
AL590842.1	EMBL	CDS	1931147	1931536	.	+	0	ID=cds1645;Parent=gene1679;Dbxref=InterPro:IPR007374,InterPro:IPR009326,InterPro:IPR015947,UniProtKB/TrEMBL:Q7CIX2,NCBI_GP:CAL20336.1;Name=CAL20336.1;Note=Similar to Streptomyces coelicolor hypothetical protein SC6G4.19C TR:O86782 (EMBL:AL031317) (190 aa) fasta scores: E(): 6.5e-10%2C 41.3%25 id in 104 aa%2C and to Bacillus halodurans BH0898 protein TR:Q9KEF4 (EMBL:AP001510) (134 aa) fasta scores: E(): 0.034%2C 30.5%25 id in 95 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001510;product=conserved hypothetical protein;protein_id=CAL20336.1;transl_table=11
AL590842.1	EMBL	gene	1931646	1931885	.	-	.	ID=gene1680;Name=YPO1694;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1694
AL590842.1	EMBL	CDS	1931646	1931885	.	-	0	ID=cds1646;Parent=gene1680;Dbxref=InterPro:IPR009950,UniProtKB/TrEMBL:Q7CIX1,NCBI_GP:CAL20337.1;Name=CAL20337.1;Note=Similar to Escherichia coli hypothetical protein YebV SW:YEBV_ECOLI (P76274) (78 aa) fasta scores: E(): 4.1e-19%2C 57.9%25 id in 76 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL20337.1;transl_table=11
AL590842.1	EMBL	gene	1932093	1933082	.	-	.	ID=gene1681;Name=YPO1695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1695
AL590842.1	EMBL	CDS	1932093	1933082	.	-	0	ID=cds1647;Parent=gene1681;Dbxref=InterPro:IPR007893,UniProtKB/TrEMBL:Q7CIX0,NCBI_GP:CAL20338.1;Name=CAL20338.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein TR:AAG08040 (EMBL:AE004879) (315 aa) fasta scores: E(): 0%2C 41.5%25 id in 299 aa%2C and to Pseudomonas fluorescens hypothetical 23.6 kDa protein TR:Q9KIM7 (EMBL:AF228767) (231 aa) fasta scores: E(): 1.2e-13%2C 29.9%25 id in 231 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF228767;product=putative membrane protein;protein_id=CAL20338.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1932663	1932728	.	-	.	ID=id3978;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1932819	1932884	.	-	.	ID=id3979;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1932945	1933010	.	-	.	ID=id3980;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1933288	1935735	.	-	.	ID=gene1682;Name=YPO1696;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1696
AL590842.1	EMBL	CDS	1933288	1935735	.	-	0	ID=cds1648;Parent=gene1682;Dbxref=GOA:Q7CIW9,InterPro:IPR000015,InterPro:IPR025949,UniProtKB/TrEMBL:Q7CIW9,NCBI_GP:CAL20339.1;Name=CAL20339.1;Note=Similar to Escherichia coli outer membrane usher protein AfaC precursor SW:AFAC_ECOLI (P53517) (859 aa) fasta scores: E(): 1.4e-13%2C 22.7%25 id in 631 aa and Pseudomonas aeruginosa hypothetical protein Pa4652 TR:AAG08039 (EMBL:AE004879) (790 aa) fasta scores: E(): 0%2C42.9%25 id in 805 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004879;product=probable outer membrane usher protein;protein_id=CAL20339.1;transl_table=11
AL590842.1	EMBL	gene	1935923	1936675	.	-	.	ID=gene1683;Name=YPO1697;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1697
AL590842.1	EMBL	CDS	1935923	1936675	.	-	0	ID=cds1649;Parent=gene1683;Dbxref=GOA:Q7CIW8,InterPro:IPR008962,InterPro:IPR016147,UniProtKB/TrEMBL:Q7CIW8,NCBI_GP:CAL20340.1;Name=CAL20340.1;Note=Similar to Pseudomonas aeruginosa PA01 probable pili assembly chaperone TR:AAG08038 (EMBL:AE004879) (262 aa) fasta scores: E(): 0%2C 43.2%25 id in 243 aa%2C and to Escherichia coli chaperone protein CssC precursor SW:CSC1_ECOLI (P53518) (232 aa) fasta scores: E(): 0.0013%2C21.9%25 id in 242 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004879;product=putative chaperone protein;protein_id=CAL20340.1;transl_table=11
AL590842.1	EMBL	gene	1936706	1937263	.	-	.	ID=gene1684;Name=YPO1698;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1698
AL590842.1	EMBL	CDS	1936706	1937263	.	-	0	ID=cds1650;Parent=gene1684;Dbxref=InterPro:IPR007893,UniProtKB/TrEMBL:Q0WG87,NCBI_GP:CAL20341.1;Name=CAL20341.1;Note=Similar to Myxococcus xanthus protein U precursor Pru SW:PRU_MYXXA (P27755) (179 aa) fasta scores: E(): 6.7e-05%2C 25.0%25 id in 180 aa%2C and to Pseudomonas aeruginosa PA01 hypothetical protein TR:AAG08037 (EMBL:AE004879) (180 aa) fasta scores: E(): 8e-16%2C 34.5%25 id in 174 aa. This CDS shares 31.9%25 and 30.8%25 identity with YPO1699 and YPO1700 respectively;gbkey=CDS;inference=similar to sequence:INSDC:AE004879;product=putative exported protein;protein_id=CAL20341.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1936976	1937002	.	-	.	ID=id3981;Note=PS00221 MIP family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00221
AL590842.1	EMBL	gene	1937284	1937814	.	-	.	ID=gene1685;Name=YPO1699;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1699
AL590842.1	EMBL	CDS	1937284	1937814	.	-	0	ID=cds1651;Parent=gene1685;Dbxref=InterPro:IPR007893,UniProtKB/TrEMBL:Q0WG86,NCBI_GP:CAL20342.1;Name=CAL20342.1;Note=Similar to Myxococcus xanthus protein U precursor Pru SW:PRU_MYXXA (P27755) (179 aa) fasta scores: E(): 9.9e-07%2C 28.9%25 id in 180 aa%2C and to Pseudomonas aeruginosa PA01 hypothetical protein TR:AAG08036 (EMBL:AE004879) (177 aa) fasta scores: E(): 2.4e-20%2C 40.6%25 id in 170 aa. This CDS shares 31.9%25 and 35.9%25 identity with YPO1698 and YPO1700 respectively;gbkey=CDS;inference=similar to sequence:INSDC:AE004879;product=putative exported protein;protein_id=CAL20342.1;transl_table=11
AL590842.1	EMBL	gene	1937820	1938374	.	-	.	ID=gene1686;Name=YPO1700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1700
AL590842.1	EMBL	CDS	1937820	1938374	.	-	0	ID=cds1652;Parent=gene1686;Dbxref=InterPro:IPR007893,UniProtKB/TrEMBL:Q7CIW7,NCBI_GP:CAL20343.1;Name=CAL20343.1;Note=Similar to Myxococcus xanthus protein U precursor Pru SW:PRU_MYXXA (P27755) (179 aa) fasta scores: E(): 6.3e-10%2C 31.6%25 id in 187 aa%2C and to Pseudomonas aeruginosa PA01 hypothetical protein TR:AAG08035 (EMBL:E004879) (182 aa) fasta scores: E(): 2.2e-11%2C 31.3%25 id in 166 aa. This CDS shares 30.8%25 and 35.9%25 identity with the two upstream CDSes%2C YPO1698 and YPO1699%2C respectively;gbkey=CDS;inference=similar to sequence:INSDC:E004879;product=putative exported protein;protein_id=CAL20343.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1938123	1938188	.	-	.	ID=id3982;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1938249	1938314	.	-	.	ID=id3983;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1938853	1941504	.	-	.	ID=gene1687;Name=YPO1701;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1701
AL590842.1	EMBL	CDS	1938853	1941504	.	-	0	ID=cds1653;Parent=gene1687;Dbxref=InterPro:IPR003399,UniProtKB/TrEMBL:Q0WG84,NCBI_GP:CAL20344.1;Name=CAL20344.1;Note=Similar to Escherichia coli hypothetical protein YebT TR:P76272 (EMBL:AE000277) (879 aa) fasta scores: E(): 0%2C 67.6%25 id in 886 aa. Note the extensive overlap with the upstream CDS.;gbkey=CDS;inference=similar to sequence:INSDC:AE000277;product=conserved hypothetical protein;protein_id=CAL20344.1;transl_table=11
AL590842.1	EMBL	gene	1941473	1942825	.	-	.	ID=gene1688;Name=yebS;gbkey=Gene;gene=yebS;gene_biotype=protein_coding;locus_tag=YPO1702
AL590842.1	EMBL	CDS	1941473	1942825	.	-	0	ID=cds1654;Parent=gene1688;Dbxref=InterPro:IPR005219,InterPro:IPR007498,InterPro:IPR011031,UniProtKB/TrEMBL:Q7CIW6,NCBI_GP:CAL20345.1;Name=CAL20345.1;Note=Similar to Escherichia coli hypothetical 48.3 kDa protein in prc-pphA intergenic region YebS SW:YEBS_ECOLI (P76271) (427 aa) fasta scores: E(): 0%2C 66.5%25 id in 415 aa%2Cand to Haemophilus influenzae hypothetical protein Hi1671 SW:YEBS_HAEIN (P44287) (416 aa) fasta scores: E(): 0%2C 44.7%25 id in 398 aa;gbkey=CDS;gene=yebS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL20345.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1941542	1941607	.	-	.	ID=id3984;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=yebS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1941623	1941688	.	-	.	ID=id3985;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=yebS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1941752	1941817	.	-	.	ID=id3986;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=yebS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1941896	1941961	.	-	.	ID=id3987;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=yebS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1942130	1942186	.	-	.	ID=id3988;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=yebS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1942232	1942282	.	-	.	ID=id3989;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=yebS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1942346	1942411	.	-	.	ID=id3990;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=yebS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1942472	1942537	.	-	.	ID=id3991;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=yebS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1942952	1943449	.	+	.	ID=gene1689;Name=YPO1703;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1703
AL590842.1	EMBL	CDS	1942952	1943449	.	+	0	ID=cds1655;Parent=gene1689;Dbxref=InterPro:IPR003018,InterPro:IPR029016,UniProtKB/TrEMBL:Q74UI8,NCBI_GP:CAL20346.1;Name=CAL20346.1;Note=Similar to Escherichia coli hypothetical protein YebR SW:YEBR_ECOLI (P76270) (183 aa) fasta scores: E(): 0%2C65.9%25 id in 164 aa%2C and to Vibrio cholerae hypothetical protein VC1498 TR:Q9KRY5 (EMBL:AE004228) (192 aa) fasta scores: E(): 0%2C 66.2%25 id in 136 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004228;product=conserved hypothetical protein;protein_id=CAL20346.1;transl_table=11
AL590842.1	EMBL	gene	1943545	1944258	.	+	.	ID=gene1690;Name=proQ;gbkey=Gene;gene=proQ;gene_biotype=protein_coding;locus_tag=YPO1704
AL590842.1	EMBL	CDS	1943545	1944258	.	+	0	ID=cds1656;Parent=gene1690;Dbxref=GOA:Q8ZFJ9,InterPro:IPR016103,InterPro:IPR023529,NCBI_GP:CAL20347.1;Name=CAL20347.1;Note=Similar to Escherichia coli ProQ SW:PROQ_ECOLI (P45577) (232 aa) fasta scores: E(): 0%2C 74.0%25 id in 242 aa. It has been suggested that ProQ is a structural element that influences the osmotic activation of ProP (an osmoregulatory compatible solute transporter in E. coli K-12) at a posttranslational level. It is also similar to Vibrio cholerae hypothetical protein VC1497 TR:Q9KRY6 (EMBL:AE004228) (208 aa) fasta scores: E(): 3.7e-23%2C 53.0%25 id in 236 aa;gbkey=CDS;gene=proQ;inference=similar to sequence:INSDC:AE004228;product=ProP effector homologue;protein_id=CAL20347.1;transl_table=11
AL590842.1	EMBL	gene	1944278	1946350	.	+	.	ID=gene1691;Name=prc;gbkey=Gene;gene=prc;gene_biotype=protein_coding;gene_synonym=tsp;locus_tag=YPO1705
AL590842.1	EMBL	CDS	1944278	1946350	.	+	0	ID=cds1657;Parent=gene1691;Dbxref=GOA:Q0WG80,InterPro:IPR001478,InterPro:IPR004447,InterPro:IPR005151,InterPro:IPR020992,InterPro:IPR029045,UniProtKB/TrEMBL:Q0WG80,NCBI_GP:CAL20348.1;Name=CAL20348.1;Note=Similar to Escherichia coli tail-specific protease precursor Prc or Tsp SW:PRC_ECOLI (P23865) (682 aa) fasta scores: E(): 0%2C 81.6%25 id in 681 aa%2C and to Vibrio cholerae tail-specific protease VC1496 TR:Q9KRY7 (EMBL:AE004228) (665 aa) fasta scores: E(): 0%2C 57.8%25 id in 664 aa;gbkey=CDS;gene=prc;inference=similar to sequence:INSDC:AE004228;product=tail-specific protease precursor;protein_id=CAL20348.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1944986	1945240	.	+	.	ID=id3992;Note=Pfam match to entry PF00595 PDZ%2C PDZ domain (Also known as DHR or GLGF).%2C score 61.80%2C E-value 1.5e-14;gbkey=misc_feature;gene=prc;inference=protein motif:PF00595
AL590842.1	EMBL	gene	1946824	1947705	.	+	.	ID=gene1692;Name=htpX;gbkey=Gene;gene=htpX;gene_biotype=protein_coding;locus_tag=YPO1706
AL590842.1	EMBL	CDS	1946824	1947705	.	+	0	ID=cds1658;Parent=gene1692;Dbxref=GOA:Q8ZFJ7,InterPro:IPR001915,InterPro:IPR022919,NCBI_GP:CAL20349.1;Name=CAL20349.1;Note=Similar to Escherichia coli probable protease HtpX SW:HTPX_ECOLI (P23894) (293 aa) fasta scores: E(): 0%2C 87.0%25 id in 293 aa%2C and to Vibrio cholerae heat shock protein HtpX vc1117 TR:Q9KSY9 (EMBL:AE004192) (287 aa) fasta scores: E(): 0%2C 69.9%25 id in 292 aa;gbkey=CDS;gene=htpX;inference=similar to sequence:INSDC:AE004192;product=putative heat shock protein;protein_id=CAL20349.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1946836	1946904	.	+	.	ID=id3993;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=htpX;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1946917	1946985	.	+	.	ID=id3994;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=htpX;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1947064	1947681	.	+	.	ID=id3995;Note=Pfam match to entry PF01435 Peptidase_M48%2C Peptidase family M48%2C score 201.00%2C E-value 1.8e-56;gbkey=misc_feature;gene=htpX;inference=protein motif:PF01435
AL590842.1	EMBL	sequence_feature	1947295	1947363	.	+	.	ID=id3996;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=htpX;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1947406	1947474	.	+	.	ID=id3997;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=htpX;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1947598	1947621	.	+	.	ID=id3998;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=htpX;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	1948363	1948905	.	+	.	ID=gene1693;Name=YPO1707;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1707
AL590842.1	EMBL	CDS	1948363	1948905	.	+	0	ID=cds1659;Parent=gene1693;Dbxref=GOA:Q7CIW5,InterPro:IPR000259,InterPro:IPR008966,UniProtKB/TrEMBL:Q7CIW5,NCBI_GP:CAL20350.1;Name=CAL20350.1;Note=Similar to Escherichia coli F17 fimbrial protein precursor F17A-A SW:FMF3_ECOLI (P11312) (180 aa) fasta scores: E(): 4.3e-15%2C 40.2%25 id in 174 aa%2C and to Xylella fastidiosa fimbrial subunit precursor Xf0083 TR:Q9PH63 (EMBL:AE003862) (184 aa) fasta scores: E(): 7.5e-17%2C 44.2%25 id in 190 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE003862;product=putative fimbrial protein;protein_id=CAL20350.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1948441	1948902	.	+	.	ID=id3999;Note=Pfam match to entry PF00419 Fimbrial%2C Fimbrial proteins%2C score 76.00%2C E-value 7.6e-19;gbkey=misc_feature;inference=protein motif:PF00419
AL590842.1	EMBL	gene	1949058	1949837	.	+	.	ID=gene1694;Name=ecpD;gbkey=Gene;gene=ecpD;gene_biotype=protein_coding;locus_tag=YPO1708
AL590842.1	EMBL	CDS	1949058	1949837	.	+	0	ID=cds1660;Parent=gene1694;Dbxref=GOA:Q7CIW4,InterPro:IPR001829,InterPro:IPR008962,InterPro:IPR016147,InterPro:IPR016148,InterPro:IPR018046,UniProtKB/TrEMBL:Q7CIW4,NCBI_GP:CAL20351.1;Name=CAL20351.1;Note=Similar to Escherichia coli chaperone protein precursor EcpD SW:ECPD_ECOLI (P33128) (246 aa) fasta scores: E(): 0%2C 41.2%25 id in 245 aa%2C and to Bordetella pertussis chaperone protein precursor FimB or FhaD SW:FIMB_BORPE (P33409) (244 aa) fasta scores: E(): 1.3e-30%2C43.2%25 id in 234 aa. This CDS is 38.3%25 identical to YPO1711;gbkey=CDS;gene=ecpD;product=putative chaperone protein;protein_id=CAL20351.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1949181	1949801	.	+	.	ID=id4000;Note=Pfam match to entry PF00345 pili_assembly%2CGram-negative pili assembly chaperone%2C score 257.10%2CE-value 6.9e-75;gbkey=misc_feature;gene=ecpD;inference=protein motif:PF00345
AL590842.1	EMBL	sequence_feature	1949394	1949447	.	+	.	ID=id4001;Note=PS00635 Gram-negative pili assembly chaperone signature.;gbkey=misc_feature;gene=ecpD;inference=protein motif:ProSite:PS00635
AL590842.1	EMBL	gene	1949919	1952531	.	+	.	ID=gene1695;Name=htrE;gbkey=Gene;gene=htrE;gene_biotype=protein_coding;locus_tag=YPO1709
AL590842.1	EMBL	CDS	1949919	1952531	.	+	0	ID=cds1661;Parent=gene1695;Dbxref=GOA:Q7CIW3,InterPro:IPR000015,InterPro:IPR018030,InterPro:IPR025885,InterPro:IPR025949,UniProtKB/TrEMBL:Q7CIW3,NCBI_GP:CAL20352.1;Name=CAL20352.1;Note=Similar to Escherichia coli outer membrane usher protein HtrE precursor SW:HTRE_ECOLI (P33129) (865 aa) fasta scores: E(): 0%2C 35.8%25 id in 861 aa%2C and to Escherichia coli outer membrane usher protein FocD precursor SW:FOCD_ECOLI (P46009) (875 aa) fasta scores: E(): 0%2C 35.4%25 id in 813 aa;gbkey=CDS;gene=htrE;product=putative outer membrane usher protein;protein_id=CAL20352.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1950048	1952462	.	+	.	ID=id4002;Note=Pfam match to entry PF00577 Usher%2C Fimbrial Usher proteins%2C score 1018.50%2C E-value 1.5e-302;gbkey=misc_feature;gene=htrE;inference=protein motif:PF00577
AL590842.1	EMBL	sequence_feature	1950867	1950899	.	+	.	ID=id4003;Note=PS01151 Fimbrial biogenesis outer membrane usher protein signature.;gbkey=misc_feature;gene=htrE;inference=protein motif:ProSite:PS01151
AL590842.1	EMBL	gene	1952528	1953691	.	+	.	ID=gene1696;Name=YPO1710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1710
AL590842.1	EMBL	CDS	1952528	1953691	.	+	0	ID=cds1662;Parent=gene1696;Dbxref=GOA:Q0WG75,InterPro:IPR000259,InterPro:IPR008966,UniProtKB/TrEMBL:Q0WG75,NCBI_GP:CAL20353.1;Name=CAL20353.1;Note=Weak Similarity to Bordetella pertussis FhaE protein precursor FhaE or FimD SW:FHAE_BORPE (Q00879) (376 aa) fasta scores: E(): 0.004%2C 21.0%25 id in 391 aa%2C and to Bordetella parapertussis FimD fimbrial adhesin fimD TR:Q44888 (EMBL:X75812) (376 aa) fasta scores: E(): 0.004%2C21.3%25 id in 352 aa;gbkey=CDS;inference=similar to sequence:INSDC:X75812;product=putative fimbrial protein;protein_id=CAL20353.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1953266	1953688	.	+	.	ID=id4004;Note=Pfam match to entry PF00419 Fimbrial%2C Fimbrial proteins%2C score -11.30%2C E-value 0.00035;gbkey=misc_feature;inference=protein motif:PF00419
AL590842.1	EMBL	gene	1953688	1954491	.	+	.	ID=gene1697;Name=YPO1711;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1711
AL590842.1	EMBL	CDS	1953688	1954491	.	+	0	ID=cds1663;Parent=gene1697;Dbxref=GOA:Q7CIW2,InterPro:IPR001829,InterPro:IPR008962,InterPro:IPR016147,InterPro:IPR016148,InterPro:IPR018046,UniProtKB/TrEMBL:Q7CIW2,NCBI_GP:CAL20354.1;Name=CAL20354.1;Note=Similar to Escherichia coli chaperone protein EcpD precursor SW:ECPD_ECOLI (P33128) (246 aa) fasta scores: E(): 3.5e-25%2C 36.5%25 id in 252 aa%2C and to Bordetella pertussis chaperone protein FimB or FhaD precursor SW:FIMB_BORPE (P33409) (244 aa) fasta scores: E(): 1.3e-22%2C38.3%25 id in 248 aa. This CDS is 38.3%25 identical to YPO1708;gbkey=CDS;product=putative chaperone protein;protein_id=CAL20354.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1953820	1954458	.	+	.	ID=id4005;Note=Pfam match to entry PF00345 pili_assembly%2CGram-negative pili assembly chaperone%2C score 199.60%2CE-value 6.4e-58;gbkey=misc_feature;inference=protein motif:PF00345
AL590842.1	EMBL	sequence_feature	1954045	1954098	.	+	.	ID=id4006;Note=PS00635 Gram-negative pili assembly chaperone signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00635
AL590842.1	EMBL	gene	1954545	1955912	.	-	.	ID=gene1698;Name=YPO1712;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1712
AL590842.1	EMBL	CDS	1954545	1955912	.	-	0	ID=cds1664;Parent=gene1698;Dbxref=GOA:Q7CIW1,InterPro:IPR001411,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q7CIW1,NCBI_GP:CAL20355.1;Name=CAL20355.1;Note=Similar to Zymomonas mobilis tetracenomycin C resistance and export protein YjcC TR:Q9X3X9 (EMBL:AF088896) (487 aa) fasta scores: E(): 0%2C 43.9%25 id in 444 aa%2C and to Escherichia coli O494 TR:P76269 (EMBL:AE000277) (494 aa) fasta scores: E(): 0%2C 69.9%25 id in 452 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF088896;product=putative transport protein;protein_id=CAL20355.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1954563	1954628	.	-	.	ID=id4007;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1954842	1954907	.	-	.	ID=id4008;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1954929	1954994	.	-	.	ID=id4009;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1955040	1955105	.	-	.	ID=id4010;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1955166	1955222	.	-	.	ID=id4011;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1955238	1955303	.	-	.	ID=id4012;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1955343	1955408	.	-	.	ID=id4013;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1955424	1955489	.	-	.	ID=id4014;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1955511	1955576	.	-	.	ID=id4015;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1955589	1955654	.	-	.	ID=id4016;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1955691	1955756	.	-	.	ID=id4017;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1956239	1957405	.	+	.	ID=gene1699;Name=ogl;gbkey=Gene;gene=ogl;gene_biotype=protein_coding;locus_tag=YPO1713
AL590842.1	EMBL	CDS	1956239	1957405	.	+	0	ID=cds1665;Parent=gene1699;Dbxref=GOA:Q7CIW0,InterPro:IPR015943,InterPro:IPR027946,UniProtKB/TrEMBL:Q7CIW0,NCBI_GP:CAL20356.1;Name=CAL20356.1;Note=Similar to Erwinia chrysanthemi oligogalacturonate lyase Ogl SW:OGL_ERWCH (P21258) (388 aa) fasta scores: E(): 0%2C 79.4%25 id in 388 aa%2C and to Erwinia carotovora oligogalacturonide lyase Ogl SW:OGL_ERWCA (Q59418) (388 aa) fasta scores: E(): 0%2C 80.2%25 id in 388 aa;gbkey=CDS;gene=ogl;product=oligogalacturonate lyase;protein_id=CAL20356.1;transl_table=11
AL590842.1	EMBL	gene	1957592	1958383	.	+	.	ID=gene1700;Name=kdgR;gbkey=Gene;gene=kdgR;gene_biotype=protein_coding;locus_tag=YPO1714
AL590842.1	EMBL	CDS	1957592	1958383	.	+	0	ID=cds1666;Parent=gene1700;Dbxref=GOA:Q7CIV9,InterPro:IPR005471,InterPro:IPR011991,InterPro:IPR014757,InterPro:IPR029016,UniProtKB/TrEMBL:Q7CIV9,NCBI_GP:CAL20357.1;Name=CAL20357.1;Note=Similar to Pectobacterium carotovorum subsp. cartovorum KdgR TR:Q9RB24 (EMBL:AF135396) (263 aa) fasta scores: E(): 0%2C 89.0%25 id in 263 aa%2C and to Escherichia coli transcriptional regulator KdgR SW:KDGR_ECOLI (P76268) (263 aa) fasta scores: E(): 0%2C 86.3%25 id in 263 aa;gbkey=CDS;gene=kdgR;inference=similar to sequence:INSDC:AF135396;product=IclR-family transcriptional regulatory protein;protein_id=CAL20357.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1957685	1957750	.	+	.	ID=id4018;Note=Predicted helix-turn-helix motif with score 1732 (+5.09 SD) at aa 32-53%2C sequence IGITELSQRVMMPKSTVYRFLQ;gbkey=misc_feature;gene=kdgR
AL590842.1	EMBL	sequence_feature	1957799	1958356	.	+	.	ID=id4019;Note=Pfam match to entry PF01614 IclR%2C Bacterial transcriptional regulator%2C score 288.50%2C E-value 8.4e-83;gbkey=misc_feature;gene=kdgR;inference=protein motif:PF01614
AL590842.1	EMBL	gene	1958768	1959619	.	+	.	ID=gene1701;Name=b0867;gbkey=Gene;gene=b0867;gene_biotype=protein_coding;gene_synonym=ybjR;locus_tag=YPO1715
AL590842.1	EMBL	CDS	1958768	1959619	.	+	0	ID=cds1667;Parent=gene1701;Dbxref=GOA:Q7CIV8,InterPro:IPR002477,InterPro:IPR002502,UniProtKB/TrEMBL:Q7CIV8,NCBI_GP:CAL20358.1;Name=CAL20358.1;Note=Similar to Escherichia coli probable N-acetylmuramoyl-L-alanine amidase YbjR or B0867 SW:YBJR_ECOLI (P75820) (276 aa) fasta scores: E(): 0%2C 47.0%25 id in 268 aa%2C and to Pseudomonas aeruginosa TR:AAG08870 (EMBL:AE004961) (259 aa) fasta scores: E(): 0%2C 48.3%25 id in 265 aa. Similar to YPO1683 (48.0%25 identity in 256 aa overlap);gbkey=CDS;gene=b0867;inference=similar to sequence:INSDC:AE004961;product=probable N-acetylmuramoyl-L-alanine amidase;protein_id=CAL20358.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1958783	1958815	.	+	.	ID=id4020;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=b0867;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	1958870	1959334	.	+	.	ID=id4021;Note=Pfam match to entry PF01510 Amidase_2%2CN-acetylmuramoyl-L-alanine amidase%2C score 53.90%2C E-value 3.5e-12;gbkey=misc_feature;gene=b0867;inference=protein motif:PF01510
AL590842.1	EMBL	gene	1959834	1961231	.	-	.	ID=gene1702;Name=gltP;gbkey=Gene;gene=gltP;gene_biotype=protein_coding;locus_tag=YPO1716
AL590842.1	EMBL	CDS	1959834	1961231	.	-	0	ID=cds1668;Parent=gene1702;Dbxref=GOA:Q7CIV7,InterPro:IPR001991,UniProtKB/TrEMBL:Q7CIV7,NCBI_GP:CAL20359.1;Name=CAL20359.1;Note=Similar to Escherichia coli proton glutamate symport protein GltP SW:GLTP_ECOLI (P21345) (437 aa) fasta scores: E(): 2.2e-21%2C 25.9%25 id in 432 aa%2C and to Escherichia coli hypothetical symporter YdjN SW:YDJN_ECOLI (P77529) (463 aa) fasta scores: E(): 0%2C 83.8%25 id in 463 aa;gbkey=CDS;gene=gltP;inference=protein motif:TMHMM:2.0;product=putative transport protein;protein_id=CAL20359.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1959897	1961141	.	-	.	ID=id4022;Note=Pfam match to entry PF00375 SDF%2CSodium:dicarboxylate symporter family%2C score 374.40%2CE-value 1.2e-108;gbkey=misc_feature;gene=gltP;inference=protein motif:PF00375
AL590842.1	EMBL	sequence_feature	1959975	1960040	.	-	.	ID=id4023;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1960053	1960118	.	-	.	ID=id4024;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1960140	1960205	.	-	.	ID=id4025;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1960380	1960445	.	-	.	ID=id4026;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1960611	1960676	.	-	.	ID=id4027;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1960845	1960910	.	-	.	ID=id4028;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1960947	1961012	.	-	.	ID=id4029;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1961073	1961126	.	-	.	ID=id4030;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1961166	1961216	.	-	.	ID=id4031;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1961429	1961977	.	-	.	ID=gene1703;Name=ydjM;gbkey=Gene;gene=ydjM;gene_biotype=protein_coding;locus_tag=YPO1717
AL590842.1	EMBL	CDS	1961429	1961977	.	-	0	ID=cds1669;Parent=gene1703;Dbxref=InterPro:IPR007404,InterPro:IPR016956,UniProtKB/TrEMBL:Q7CIV6,NCBI_GP:CAL20360.1;Name=CAL20360.1;Note=Similar to Escherichia coli hypothetical 22.8 kDa protein in pfkB-cedA intergenic region precursor ydjM SW:YDJM_ECOLI (P76209) (200 aa) fasta scores: E(): 0%2C 66.7%25 id in 162 aa;gbkey=CDS;gene=ydjM;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL20360.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1961462	1961527	.	-	.	ID=id4032;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=ydjM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1961597	1961662	.	-	.	ID=id4033;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=ydjM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1961708	1961773	.	-	.	ID=id4034;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=ydjM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1962457	1963167	.	-	.	ID=gene1704;Name=YPO1718;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1718
AL590842.1	EMBL	CDS	1962457	1963167	.	-	0	ID=cds1670;Parent=gene1704;Dbxref=InterPro:IPR009331,UniProtKB/TrEMBL:Q7CIV5,NCBI_GP:CAL20361.1;Name=CAL20361.1;Note=Similar to Vibrio halioticoli alginate lyase AlyvgIII TR:Q9RGQ2 (EMBL:AF114040) (235 aa) fasta scores: E(): 5.4e-09%2C 30.2%25 id in 255 aa%2C and to Escherichia coli hypothetical 28.3 kDa protein in fecI-fimB intergenic region precursor YjhA SW:YJHA_ECOLI (P39372) (241 aa) fasta scores: E(): 1.1e-07%2C 22.3%25 id in 247 aa. Similar to YPO3995 (63.7%25 identity in 212 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AF114040;product=putative exported protein;protein_id=CAL20361.1;transl_table=11
AL590842.1	EMBL	gene	1963465	1964757	.	-	.	ID=gene1705;Name=YPO1719;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1719
AL590842.1	EMBL	CDS	1963465	1964757	.	-	0	ID=cds1671;Parent=gene1705;Dbxref=GOA:Q7CIV4,InterPro:IPR006059,UniProtKB/TrEMBL:Q7CIV4,NCBI_GP:CAL20362.1;Name=CAL20362.1;Note=Similar to Bacillus subtilis hypothetical ABC transporter extracellular binding protein YurO precursor SW:YURO_BACSU (O32156) (422 aa) fasta scores: E(): 2.7e-13%2C23.3%25 id in 442 aa%2C and to Streptomyces coelicolor putative maltose-binding pootein MalE TR:P72397 (EMBL:Y07706) (423 aa) fasta scores: E(): 3.8e-11%2C 23.3%25 id in 434 aa;gbkey=CDS;inference=similar to sequence:INSDC:Y07706;product=putative sugar-binding protein;protein_id=CAL20362.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1963720	1964370	.	-	.	ID=id4035;Note=Pfam match to entry PF01547 SBP_bacterial_1%2CBacterial extracellular solute-binding protein%2C score 54.40%2C E-value 3e-14;gbkey=misc_feature;inference=protein motif:PF01547
AL590842.1	EMBL	gene	1964773	1965900	.	-	.	ID=gene1706;Name=YPO1720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1720
AL590842.1	EMBL	CDS	1964773	1965900	.	-	0	ID=cds1672;Parent=gene1706;Dbxref=GOA:Q7CIV3,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR008995,InterPro:IPR013611,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CIV3,NCBI_GP:CAL20363.1;Name=CAL20363.1;Note=Similar to Klebsiella oxytoca CymD TR:Q48394 (EMBL:X86014) (376 aa) fasta scores: E(): 0%2C 54.7%25 id in 375 aa%2C and to Thermococcus litoralis maltose transport protein MalK TR:Q9YGA6 (EMBL:AF121946) (372 aa) fasta scores: E(): 0%2C 47.8%25 id in 387 aa. Similar to YPO0609 (53.9%25 identity in 373 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:X86014;product=putative sugar ABC transporter;protein_id=CAL20363.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1965253	1965813	.	-	.	ID=id4036;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 184.80%2C E-value 1.3e-51;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1965454	1965498	.	-	.	ID=id4037;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	1965914	1966834	.	-	.	ID=gene1707;Name=YPO1721;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1721
AL590842.1	EMBL	CDS	1965914	1966834	.	-	0	ID=cds1673;Parent=gene1707;Dbxref=GOA:Q74UH2,InterPro:IPR000515,UniProtKB/TrEMBL:Q74UH2,NCBI_GP:CAL20364.1;Name=CAL20364.1;Note=Similar to Bacillus halodurans lactose transport system Bh1119 TR:Q9KDU2 (EMBL:AP001511) (281 aa) fasta scores: E(): 0%2C 43.3%25 id in 268 aa%2C and to Bacillus subtilis probable ABC transporter permease protein YesQ SW:YESQ_BACSU (O31520) (296 aa) fasta scores: E(): 0%2C 37.3%25 id in 292 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001511;product=putative sugar ABC transporter (permease);protein_id=CAL20364.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1965965	1966030	.	-	.	ID=id4038;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1966058	1966270	.	-	.	ID=id4039;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 52.10%2C E-value 1.2e-11;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	1966136	1966201	.	-	.	ID=id4040;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1966181	1966267	.	-	.	ID=id4041;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	1966265	1966321	.	-	.	ID=id4042;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1966367	1966432	.	-	.	ID=id4043;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1966454	1966519	.	-	.	ID=id4044;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1966652	1966717	.	-	.	ID=id4045;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1966827	1967717	.	-	.	ID=gene1708;Name=YPO1722;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1722
AL590842.1	EMBL	CDS	1966827	1967717	.	-	0	ID=cds1674;Parent=gene1708;Dbxref=GOA:Q7CIV2,InterPro:IPR000515,UniProtKB/TrEMBL:Q7CIV2,NCBI_GP:CAL20365.1;Name=CAL20365.1;Note=Similar to Bacillus halodurans lactose transport system Bh1118 TR:Q9KDU3 (EMBL:AP001511) (318 aa) fasta scores: E(): 0%2C 46.7%25 id in 289 aa%2C and to Streptomyces coelicolor putative transport system inner membrane protein Scl2.28C TR:Q9L271 (EMBL:AL137778) (328 aa) fasta scores: E(): 0%2C 40.8%25 id in 299 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001511;product=putative ABC sugar transporter (permease);protein_id=CAL20365.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1966884	1966949	.	-	.	ID=id4046;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1966977	1967198	.	-	.	ID=id4047;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 79.40%2C E-value 7.3e-20;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	1966980	1967036	.	-	.	ID=id4048;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1967076	1967132	.	-	.	ID=id4049;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1967109	1967195	.	-	.	ID=id4050;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	1967178	1967243	.	-	.	ID=id4051;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1967280	1967345	.	-	.	ID=id4052;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1967358	1967423	.	-	.	ID=id4053;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1967445	1967510	.	-	.	ID=id4054;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1967631	1967696	.	-	.	ID=id4055;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1967758	1969425	.	-	.	ID=gene1709;Name=kdgC;gbkey=Gene;gene=kdgC;gene_biotype=protein_coding;gene_synonym=pelW;locus_tag=YPO1723
AL590842.1	EMBL	CDS	1967758	1969425	.	-	0	ID=cds1675;Parent=gene1709;Dbxref=GOA:Q7CIV1,InterPro:IPR010702,UniProtKB/TrEMBL:Q7CIV1,NCBI_GP:CAL20366.1;Name=CAL20366.1;Note=Similar to Erwinia chrysanthemi exopolygalacturonate lyase PelW or KdgC SW:PELW_ERWCH (Q05526) (553 aa) fasta scores: E(): 0%2C 63.1%25 id in 555 aa%2C and to Yersinia pseudotuberculosis periplasmic pectate lyase precursor PelY SW:PELP_YERPS (P11278) (541 aa) fasta scores: E(): 0%2C 38.7%25 id in 530 aa. Similar to YPO3994 (38.6%25%25 identity in 534 aa overlap).;gbkey=CDS;gene=kdgC;product=exopolygalacturonate lyase;protein_id=CAL20366.1;transl_table=11
AL590842.1	EMBL	gene	1969761	1970522	.	-	.	ID=gene1710;Name=kduD1;gbkey=Gene;gene=kduD1;gene_biotype=protein_coding;locus_tag=YPO1724
AL590842.1	EMBL	CDS	1969761	1970522	.	-	0	ID=cds1676;Parent=gene1710;Dbxref=GOA:Q0WG61,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR011286,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:Q0WG61,NCBI_GP:CAL20367.1;Name=CAL20367.1;Note=Similar to Escherichia coli 2-deoxy-D-gluconate 3-dehydrogenase KduD SW:KDUD_ECOLI (P37769) (253 aa) fasta scores: E(): 0%2C 84.6%25 id in 253 aa%2C and to Erwinia chrysanthemi 2-deoxy-D-gluconate 3-dehydrogenase KduD SW:KDUD_ERWCH (Q05528) (253 aa) fasta scores: E(): 0%2C 80.6%25 id in 253 aa. Similar to YPO0839 (68.1%25 identity in 251 aa overlap);gbkey=CDS;gene=kduD1;product=2-deoxy-D-gluconate 3-dehydrogenase;protein_id=CAL20367.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1969785	1969877	.	-	.	ID=id4056;Note=Pfam match to entry PF00678 adh_short_C2%2C Short chain dehydrogenase/reductase C-terminus%2C score 44.50%2CE-value 5.8e-11;gbkey=misc_feature;gene=kduD1;inference=protein motif:PF00678
AL590842.1	EMBL	sequence_feature	1969941	1970492	.	-	.	ID=id4057;Note=Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase%2C score 248.60%2C E-value 8.7e-71;gbkey=misc_feature;gene=kduD1;inference=protein motif:PF00106
AL590842.1	EMBL	sequence_feature	1970004	1970090	.	-	.	ID=id4058;Note=PS00061 Short-chain dehydrogenases/reductases family signature.;gbkey=misc_feature;gene=kduD1;inference=protein motif:ProSite:PS00061
AL590842.1	EMBL	gene	1970614	1971450	.	-	.	ID=gene1711;Name=kduI;gbkey=Gene;gene=kduI;gene_biotype=protein_coding;locus_tag=YPO1725
AL590842.1	EMBL	CDS	1970614	1971450	.	-	0	ID=cds1677;Parent=gene1711;Dbxref=GOA:Q8ZFH8,InterPro:IPR007045,InterPro:IPR011051,InterPro:IPR021120,InterPro:IPR027447,InterPro:IPR027449,NCBI_GP:CAL20368.1;Name=CAL20368.1;Note=Similar to Erwinia chrysanthemi 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI SW:KDUI_ERWCH (Q05529) (278 aa) fasta scores: E(): 0%2C 83.5%25 id in 278 aa%2C and to Escherichia coli 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI SW:KDUI_ECOLI (Q46938) (278 aa) fasta scores: E(): 0%2C 79.9%25 id in 278 aa;gbkey=CDS;gene=kduI;product=4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase;protein_id=CAL20368.1;transl_table=11
AL590842.1	EMBL	pseudogene	1971786	1972112	.	+	.	ID=gene1712;Name=kdgF;gbkey=Gene;gene=kdgF;gene_biotype=pseudogene;locus_tag=YPO1726;pseudo=true
AL590842.1	EMBL	CDS	1971786	1972112	.	+	0	ID=cds1678;Parent=gene1712;Note=Similar to Erwinia chrysanthemi pectin degradation protein KdgF SW:KDGF_ERWCH (Q05527) (110 aa) fasta scores: E(): 0%2C 80.7%25 id in 109 aa%2C and to Bacillus halodurans pectin degradation protein KdgF TR:Q9KFI3 (EMBL:AP001508) (108 aa) fasta scores: E(): 1.8e-09%2C 37.8%25 id in 98 aa. This CDS may have been disrupted by the insertion of IS285 element. This insertion occurred very near the C-terminal end%2C replacing the last aa at the C-terminal end with 7 aa encoded within the IS element. It is not clear whether this insertion affects the function of the protein.;gbkey=CDS;gene=kdgF;inference=similar to sequence:INSDC:AP001508;product=pectin degradation protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	repeat_region	1972113	1973427	.	+	.	ID=id4059;Note=insertion sequence:IS285;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	1972113	1972141	.	+	.	ID=id4060;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1972184	1973392	.	+	.	ID=gene1713;Name=y1062;gbkey=Gene;gene=y1062;gene_biotype=protein_coding;gene_synonym=ypmt1.80C;locus_tag=YPO1727
AL590842.1	EMBL	CDS	1972184	1973392	.	+	0	ID=cds1679;Parent=gene1713;Dbxref=GOA:O68779,InterPro:IPR001207,UniProtKB/TrEMBL:O68779,NCBI_GP:CAL20370.1;Name=CAL20370.1;Note=Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa;gbkey=CDS;gene=y1062;inference=similar to sequence:INSDC:AF053947;product=transposase for the IS285 insertion element;protein_id=CAL20370.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1972184	1973320	.	+	.	ID=id4061;Note=Pfam match to entry PF00872 Transpo_mutator%2CTransposase%2C Mutator family%2C score 430.40%2C E-value 1.6e-125;gbkey=misc_feature;gene=y1062;inference=protein motif:PF00872
AL590842.1	EMBL	sequence_feature	1972877	1972951	.	+	.	ID=id4062;Note=PS01007 Transposases%2C Mutator family%2C signature.;gbkey=misc_feature;gene=y1062;inference=protein motif:ProSite:PS01007
AL590842.1	EMBL	INVERTED	1973399	1973427	.	-	.	ID=id4063;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	pseudogene	1973867	1974676	.	+	.	ID=gene1714;Name=YPO1728;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO1728;part=1/2;pseudo=true
AL590842.1	EMBL	pseudogene	1976636	1976842	.	+	.	ID=gene1714;Name=YPO1728;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO1728;part=2/2;pseudo=true
AL590842.1	EMBL	CDS	1973867	1974676	.	+	0	ID=cds1680;Parent=gene1714;Dbxref=PSEUDO:CAL20371.1;Note=This CDS is disrupted by the insertion of IS100. The full length CDS is similar to Escherichia coli raffinose operon repressor RafR SW:RAFR_ECOLI (P21867) (335 aa) fasta scores: E(): 0%2C 49.4%25 id in 332 aa;gbkey=CDS;product=putative transcriptional regulator of sugar transport (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	CDS	1976636	1976842	.	+	0	ID=cds1680;Parent=gene1714;Dbxref=PSEUDO:CAL20371.1;Note=This CDS is disrupted by the insertion of IS100. The full length CDS is similar to Escherichia coli raffinose operon repressor RafR SW:RAFR_ECOLI (P21867) (335 aa) fasta scores: E(): 0%2C 49.4%25 id in 332 aa;gbkey=CDS;product=putative transcriptional regulator of sugar transport (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	1973867	1973932	.	+	.	ID=id4064;Note=Predicted helix-turn-helix motif with score 2098 (+6.33 SD) at aa 1-22%2C sequence MSLKKIANELGLSSTTVSRALN;gbkey=misc_feature
AL590842.1	EMBL	sequence_feature	1976636	1976644	.	+	.	ID=id4065;Note=sequence duplication around IS insertion;gbkey=misc_feature
AL590842.1	EMBL	sequence_feature	1974035	1974748	.	+	.	ID=id4066;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 112.80%2C E-value 6.6e-30;gbkey=misc_feature;inference=protein motif:PF00532
AL590842.1	EMBL	sequence_feature	1974674	1974681	.	+	.	ID=id4067;Note=Sequence duplication around IS insertion;gbkey=misc_feature
AL590842.1	EMBL	repeat_region	1974682	1976635	.	+	.	ID=id4068;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	1974682	1974709	.	+	.	ID=id4069;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1974768	1975790	.	+	.	ID=gene1715;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO1729
AL590842.1	EMBL	CDS	1974768	1975790	.	+	0	ID=cds1681;Parent=gene1715;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL20372.1;Name=CAL20372.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL20372.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1974792	1974875	.	+	.	ID=id4070;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	sequence_feature	1974819	1974884	.	+	.	ID=id4071;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	1975113	1975646	.	+	.	ID=id4072;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	gene	1975787	1976569	.	+	.	ID=gene1716;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO1730
AL590842.1	EMBL	CDS	1975787	1976569	.	+	0	ID=cds1682;Parent=gene1716;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL20373.1;Name=CAL20373.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL20373.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1975955	1976494	.	+	.	ID=id4073;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	1976114	1976137	.	+	.	ID=id4074;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	INVERTED	1976608	1976635	.	-	.	ID=id4075;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	tRNA	1976985	1977060	.	-	.	ID=rna41;Note=tRNA Asn anticodon GTT%2C Cove score 87.13;gbkey=tRNA;product=tRNA-Asn
AL590842.1	EMBL	exon	1976985	1977060	.	-	.	ID=id4076;Parent=rna41;Note=tRNA Asn anticodon GTT%2C Cove score 87.13;gbkey=tRNA;product=tRNA-Asn
AL590842.1	EMBL	gene	1977238	1978050	.	-	.	ID=gene1717;Name=YPO1732;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1732
AL590842.1	EMBL	CDS	1977238	1978050	.	-	0	ID=cds1683;Parent=gene1717;Dbxref=GOA:Q7CHU1,InterPro:IPR010384,InterPro:IPR024079,NCBI_GP:CAL20374.1;Name=CAL20374.1;Note=Similar to Escherichia coli hypothetical protein YeeI SW:YEEI_ECOLI (P76346) (265 aa) fasta scores: E(): 0%2C62.9%25 id in 267 aa%2C and to Yersinia pseudotuberculosis ORF1 protein (fragment) TR:Q9ZEX5 (EMBL:AJ009592) (154 aa) fasta scores: E(): 0%2C 99.4%25 id in 154 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ009592;product=conserved hypothetical protein;protein_id=CAL20374.1;transl_table=11
AL590842.1	EMBL	gene	1978440	1978724	.	-	.	ID=gene1718;Name=YPO1733;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1733
AL590842.1	EMBL	CDS	1978440	1978724	.	-	0	ID=cds1684;Parent=gene1718;Dbxref=InterPro:IPR005545,InterPro:IPR011008,UniProtKB/TrEMBL:Q0WG55,NCBI_GP:CAL20375.1;Name=CAL20375.1;Note=Similar to Streptomyces coelicolor hypothetical protein SC5F2A.08c TR:Q9X7N1 (EMBL:AL049587) (98 aa) fasta scores: E(): 2.3e-12%2C 45.1%25 id in 91 aa%2C and to Deinococcus radiodurans conserved hypothetical protein DR1071 TR:Q9RVF8 (EMBL:AE001957) (105 aa) fasta scores: E(): 4.2e-08%2C 33.7%25 id in 83 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL049587;product=conserved hypothetical protein;protein_id=CAL20375.1;transl_table=11
AL590842.1	EMBL	gene	1978961	1979812	.	-	.	ID=gene1719;Name=YPO1734;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1734
AL590842.1	EMBL	CDS	1978961	1979812	.	-	0	ID=cds1685;Parent=gene1719;Dbxref=GOA:Q7CHU2,InterPro:IPR011009,InterPro:IPR018934,InterPro:IPR018935,UniProtKB/TrEMBL:Q7CHU2,NCBI_GP:CAL20376.1;Name=CAL20376.1;Note=Similar to Pseudomonas aeruginosa conserved hypothetical protein PA4780 TR:AAG08166 (EMBL:AE004891) (297 aa) fasta scores: E(): 0%2C 67.7%25 id in 282 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004891;product=conserved hypothetical protein;protein_id=CAL20376.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1979126	1979725	.	-	.	ID=id4077;Note=Pfam match to entry PF01163 RIO1%2CRIO1/ZK632.3/MJ0444 family%2C score 12.00%2C E-value 9.1e-10;gbkey=misc_feature;inference=protein motif:PF01163
AL590842.1	EMBL	sequence_feature	1979285	1979323	.	-	.	ID=id4078;Note=PS00109 Tyrosine protein kinases specific active-site signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00109
AL590842.1	EMBL	sequence_feature	1979288	1979323	.	-	.	ID=id4079;Note=PS01245 RIO1/ZK632.3/MJ0444 family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01245
AL590842.1	EMBL	gene	1979915	1981633	.	-	.	ID=gene1720;Name=YPO1735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1735
AL590842.1	EMBL	CDS	1979915	1981633	.	-	0	ID=cds1686;Parent=gene1720;Dbxref=GOA:Q7CHU3,InterPro:IPR001140,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR011527,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CHU3,NCBI_GP:CAL20377.1;Name=CAL20377.1;Note=Similar to Bacillus halodurans ABC transporter Bh3891 TR:Q9K641 (EMBL:AP001520) (577 aa) fasta scores: E(): 0%2C 62.2%25 id in 569 aa%2C and to Bacillus subtilis hypothetical ABC transporter ATP-binding protein in acda 5'region YwjA SW:YWJA_BACSU (P45861) (575 aa) fasta scores: E(): 0%2C 59.4%25 id in 569 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001520;product=putative ABC transporter (ATP-binding protein);protein_id=CAL20377.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1980005	1980559	.	-	.	ID=id4080;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 221.10%2C E-value 1.6e-62;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	1980182	1980226	.	-	.	ID=id4081;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	1980515	1980538	.	-	.	ID=id4082;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	1980773	1981588	.	-	.	ID=id4083;Note=Pfam match to entry PF00664 ABC_membrane%2C ABC transporter transmembrane region.%2C score 181.20%2C E-value 1.7e-50;gbkey=misc_feature;inference=protein motif:PF00664
AL590842.1	EMBL	sequence_feature	1980842	1980898	.	-	.	ID=id4084;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1981121	1981222	.	-	.	ID=id4085;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1981418	1981483	.	-	.	ID=id4086;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1981523	1981588	.	-	.	ID=id4087;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1982289	1982453	.	+	.	ID=gene1721;Name=YPO1736;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1736
AL590842.1	EMBL	CDS	1982289	1982453	.	+	0	ID=cds1687;Parent=gene1721;Dbxref=UniProtKB/TrEMBL:Q7CHU4,NCBI_GP:CAL20378.1;Name=CAL20378.1;Note=Some similarity to the internal part of Caenorhabditis elegans probable Eph-like kinase M03a1.1 TR:Q21477 (EMBL:U49956) (919 aa) fasta scores: E(): 2.2%2C32.1%25 id in 56 aa;gbkey=CDS;inference=similar to sequence:INSDC:U49956;product=putative membrane protein;protein_id=CAL20378.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1982325	1982393	.	+	.	ID=id4088;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1982535	1982921	.	-	.	ID=gene1722;Name=YPO1737;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1737
AL590842.1	EMBL	CDS	1982535	1982921	.	-	0	ID=cds1688;Parent=gene1722;Dbxref=GOA:Q7CHU5,InterPro:IPR009057,InterPro:IPR018060,InterPro:IPR020449,UniProtKB/TrEMBL:Q7CHU5,NCBI_GP:CAL20379.1;Name=CAL20379.1;Note=Similar to Proteus vulgaris regulatory protein PqrA SW:PQRA_PROVU (Q52620) (122 aa) fasta scores: E(): 2.4e-17%2C47.6%25 id in 103 aa%2C and to Escherichia coli regulatory protein SoxS SW:SOXS_ECOLI (P22539) (106 aa) fasta scores: E(): 2.2e-15%2C 38.5%25 id in 104 aa;gbkey=CDS;product=AraC-family transcriptional regulatory protein;protein_id=CAL20379.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1982592	1982852	.	-	.	ID=id4089;Note=Pfam match to entry PF00165 HTH_AraC%2C Bacterial regulatory helix-turn-helix proteins%2C araC family%2C score 99.60%2C E-value 6e-26;gbkey=misc_feature;inference=protein motif:PF00165
AL590842.1	EMBL	gene	1983477	1983716	.	+	.	ID=gene1723;Name=YPO1738;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1738
AL590842.1	EMBL	CDS	1983477	1983716	.	+	0	ID=cds1689;Parent=gene1723;Dbxref=InterPro:IPR020262,UniProtKB/TrEMBL:Q0WG50,NCBI_GP:CAL20380.1;Name=CAL20380.1;Note=Similar to Escherichia coli hypothetical protein YecJ SW:YECJ_ECOLI (P52092) (83 aa) fasta scores: E(): 1e-21%2C 74.7%25 id in 79 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL20380.1;transl_table=11
AL590842.1	EMBL	gene	1983807	1984025	.	-	.	ID=gene1724;Name=YPO1739;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1739
AL590842.1	EMBL	CDS	1983807	1984025	.	-	0	ID=cds1690;Parent=gene1724;Dbxref=InterPro:IPR025611,UniProtKB/TrEMBL:Q0WG49,NCBI_GP:CAL20381.1;Name=CAL20381.1;Note=Similar to the C-terminal end of Influenza B virus hemagglutinin (fragment) TR:AAG22556 (EMBL:AF305219) (127 aa) fasta scores: E(): 1.2%2C 45.2%25 id in 42 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF305219;product=putative membrane protein;protein_id=CAL20381.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1983963	1984019	.	-	.	ID=id4090;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1984623	1984898	.	+	.	ID=gene1725;Name=YPO1740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1740
AL590842.1	EMBL	CDS	1984623	1984898	.	+	0	ID=cds1691;Parent=gene1725;Dbxref=GOA:Q8ZFG9,InterPro:IPR025594,NCBI_GP:CAL20382.1;Name=CAL20382.1;Note=Similar to Escherichia coli from bases 1896340 to 1906636 TR:P76266 (EMBL:AE000276) (95 aa) fasta scores: E(): 5.8e-06%2C 36.7%25 id in 90 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE000276;product=putative exported protein;protein_id=CAL20382.1;transl_table=11
AL590842.1	EMBL	gene	1985161	1985460	.	+	.	ID=gene1726;Name=YPO1741;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1741
AL590842.1	EMBL	CDS	1985161	1985460	.	+	0	ID=cds1692;Parent=gene1726;Dbxref=InterPro:IPR019701,UniProtKB/TrEMBL:Q7CHU6,NCBI_GP:CAL20383.1;Name=CAL20383.1;Note=Weakly similar to Yersinia pestis hypothetical 13.8 kDa protein Y1115 or YPMT1.48c TR:Q9ZGY0 (EMBL:AF074611) (123 aa) fasta scores: E(): 0.00024%2C 34.2%25 id in 120 aa. This CDS has an internal deletion relative to the Y. pestis plasmid-encoded hypothetical protein Y1115/Ypmt1;gbkey=CDS;inference=similar to sequence:INSDC:AF074611;product=hypothetical protein;protein_id=CAL20383.1;transl_table=11
AL590842.1	EMBL	gene	1985503	1985814	.	+	.	ID=gene1727;Name=YPO1742;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1742
AL590842.1	EMBL	CDS	1985503	1985814	.	+	0	ID=cds1693;Parent=gene1727;Dbxref=InterPro:IPR025135,UniProtKB/TrEMBL:Q7CHU7,NCBI_GP:CAL20384.1;Name=CAL20384.1;Note=Weakly similar to C-terminal end of Thermoplasma acidophilum ribonuclease HII RnhB or TA1458 SW:RNH2_THEAC (P57673) (212 aa) fasta scores: E(): 4.3%2C 33.8%25 id in 65 aa;gbkey=CDS;product=hypothetical protein;protein_id=CAL20384.1;transl_table=11
AL590842.1	EMBL	gene	1986051	1987424	.	+	.	ID=gene1728;Name=aroP;gbkey=Gene;gene=aroP;gene_biotype=protein_coding;locus_tag=YPO1743
AL590842.1	EMBL	CDS	1986051	1987424	.	+	0	ID=cds1694;Parent=gene1728;Dbxref=GOA:Q0WG45,InterPro:IPR002293,InterPro:IPR004840,InterPro:IPR004841,UniProtKB/TrEMBL:Q0WG45,NCBI_GP:CAL20385.1;Name=CAL20385.1;Note=Similar to Escherichia coli aromatic amino acid transport protein AroP SW:AROP_ECOLI (P15993) (457 aa) fasta scores: E(): 0%2C 70.5%25 id in 454 aa%2C and to Salmonella typhimurium AroP protein TR:Q9L4I0 (EMBL:AJ242516) (457 aa) fasta scores: E(): 0%2C 69.6%25 id in 454 aa. Similar to YPO3421 (77.8%25 identity in 445 aa overlap).;gbkey=CDS;gene=aroP;inference=similar to sequence:INSDC:AJ242516;product=aromatic amino acid transport protein;protein_id=CAL20385.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1986078	1987394	.	+	.	ID=id4091;Note=Pfam match to entry PF00324 aa_permeases%2C Amino acid permease%2C score 690.50%2C E-value 8.1e-204;gbkey=misc_feature;gene=aroP;inference=protein motif:PF00324
AL590842.1	EMBL	sequence_feature	1986111	1986170	.	+	.	ID=id4092;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aroP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1986177	1986269	.	+	.	ID=id4093;Note=PS00218 Amino acid permeases signature.;gbkey=misc_feature;gene=aroP;inference=protein motif:ProSite:PS00218
AL590842.1	EMBL	sequence_feature	1986180	1986233	.	+	.	ID=id4094;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aroP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1986342	1986410	.	+	.	ID=id4095;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aroP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1986420	1986488	.	+	.	ID=id4096;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aroP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1986507	1986575	.	+	.	ID=id4097;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aroP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1986642	1986710	.	+	.	ID=id4098;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aroP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1986768	1986836	.	+	.	ID=id4099;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aroP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1986894	1986962	.	+	.	ID=id4100;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aroP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1987041	1987109	.	+	.	ID=id4101;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aroP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1987119	1987187	.	+	.	ID=id4102;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aroP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1987245	1987313	.	+	.	ID=id4103;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aroP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1987323	1987382	.	+	.	ID=id4104;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aroP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	1987729	1988328	.	-	.	ID=gene1729;Name=YPO1744;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1744
AL590842.1	EMBL	CDS	1987729	1988328	.	-	0	ID=cds1695;Parent=gene1729;Dbxref=GOA:Q8D091,InterPro:IPR009746,InterPro:IPR011250,NCBI_GP:CAL20386.1;Name=CAL20386.1;Note=Similar to Salmonella typhimurium PagP TR:Q9ZHL7 (EMBL:AF057021) (186 aa)%2C which is thought to be involved in lipid A acylation and bacterial resistance against vertebral antimicrobial peptides%2C fasta scores: E(): 0%2C52.8%25 id in 159 aa%2C and to Escherichia coli CrcA protein SW:CRCA_ECOLI (P37001) (186 aa)%2C which is thought to be involved in camphor resistance and chromosome condensation%2Cfasta scores: E(): 0%2C 53.5%25 id in 159 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF057021;product=putative exported protein;protein_id=CAL20386.1;transl_table=11
AL590842.1	EMBL	gene	1989330	1989446	.	+	.	ID=gene1730;Name=YPO1745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1745
AL590842.1	EMBL	CDS	1989330	1989446	.	+	0	ID=cds1696;Parent=gene1730;Dbxref=InterPro:IPR019672,UniProtKB/TrEMBL:Q0WG43,NCBI_GP:CAL20387.1;Name=CAL20387.1;Note=Similar to Escherichia coli hypothetical protein YobF SW:YOBF_ECOLI (P76265) (47 aa) fasta scores: E(): 6.1e-11%2C 78.9%25 id in 38 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL20387.1;transl_table=11
AL590842.1	EMBL	gene	1989489	1989698	.	+	.	ID=gene1731;Name=cspC;gbkey=Gene;gene=cspC;gene_biotype=protein_coding;gene_synonym=msmB;locus_tag=YPO1746
AL590842.1	EMBL	CDS	1989489	1989698	.	+	0	ID=cds1697;Parent=gene1731;Dbxref=GOA:Q74V47,InterPro:IPR002059,InterPro:IPR011129,InterPro:IPR012156,InterPro:IPR012340,InterPro:IPR019844,UniProtKB/TrEMBL:Q74V47,NCBI_GP:CAL20388.1;Name=CAL20388.1;Note=Similar to Escherichia coli cold shock-like protein CspC or MsmB SW:CSPC_ECOLI (P36996) (68 aa) fasta scores: E(): 4.1e-27%2C 98.5%25 id in 68 aa%2C and to Salmonella typhimurium cold shock-like protein CspC SW:CSPC_SALTY (O68636) (68 aa) fasta scores: E(): 1.9e-26%2C 97.1%25 id in 68 aa. Paralogues include YPO1655%2C YPO2595%2C YPO2659%2C YPO3644%2CYPO3643%2C YPO1366%2C and YPO1398;gbkey=CDS;gene=cspC;product=cold shock protein;protein_id=CAL20388.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1989495	1989695	.	+	.	ID=id4105;Note=Pfam match to entry PF00313 CSD%2C 'Cold-shock' DNA-binding domain%2C score 151.60%2C E-value 1.3e-41;gbkey=misc_feature;gene=cspC;inference=protein motif:PF00313
AL590842.1	EMBL	sequence_feature	1989537	1989596	.	+	.	ID=id4106;Note=PS00352 'Cold-shock' DNA-binding domain signature.;gbkey=misc_feature;gene=cspC;inference=protein motif:ProSite:PS00352
AL590842.1	EMBL	gene	1989789	1990544	.	-	.	ID=gene1732;Name=YPO1747;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1747
AL590842.1	EMBL	CDS	1989789	1990544	.	-	0	ID=cds1698;Parent=gene1732;Dbxref=InterPro:IPR003730,InterPro:IPR011324,UniProtKB/TrEMBL:Q0WG41,NCBI_GP:CAL20389.1;Name=CAL20389.1;Note=Similar to Vibrio cholerae hypothetical protein VC0710 TR:Q9KU19 (EMBL:AE004157) (240 aa) fasta scores: E(): 3.6e-15%2C 32.8%25 id in 174 aa%2C and to Escherichia coli hypothetical protein YfiH SW:YFIH_ECOLI (P33644) (243 aa) fasta scores: E(): 1e-13%2C 36.2%25 id in 152 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004157;product=conserved hypothetical protein;protein_id=CAL20389.1;transl_table=11
AL590842.1	EMBL	gene	1990939	1991778	.	+	.	ID=gene1733;Name=rrmA;gbkey=Gene;gene=rrmA;gene_biotype=protein_coding;locus_tag=YPO1748
AL590842.1	EMBL	CDS	1990939	1991778	.	+	0	ID=cds1699;Parent=gene1733;Dbxref=GOA:Q7CHU8,InterPro:IPR016718,InterPro:IPR025714,InterPro:IPR029063,UniProtKB/TrEMBL:Q7CHU8,NCBI_GP:CAL20390.1;Name=CAL20390.1;Note=Similar to Escherichia coli rRNA (guanine-N1-)-methyltransferase RrmA SW:RRMA_ECOLI (P36999) (269 aa) fasta scores: E(): 0%2C 60.0%25 id in 270 aa%2C and to Vibrio cholerae rRNA (guanine-N1-)-methyltransferase Vc2003 TR:Q9KQJ5 (EMBL:AE004275) (278 aa) fasta scores: E(): 0%2C55.5%25 id in 272 aa;gbkey=CDS;gene=rrmA;inference=similar to sequence:INSDC:AE004275;product=rRNA (guanine-N1-)-methyltransferase;protein_id=CAL20390.1;transl_table=11
AL590842.1	EMBL	gene	1992000	1992278	.	-	.	ID=gene1734;Name=YPO1749;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1749
AL590842.1	EMBL	CDS	1992000	1992278	.	-	0	ID=cds1700;Parent=gene1734;Dbxref=UniProtKB/TrEMBL:Q7CHU9,NCBI_GP:CAL20391.1;Name=CAL20391.1;Note=Weakly similar to the C-terminal end of Drosophila melanogaster CG3402 protein TR:Q9W0P4 (EMBL:AE003469) (123 aa) fasta scores: E(): 6.7%2C 27.0%25 id in 74 aa. Similar to YPO2096 (42.5%25 identity in 87 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AE003469;product=hypothetical protein;protein_id=CAL20391.1;transl_table=11
AL590842.1	EMBL	pseudogene	1994513	1996540	.	-	.	ID=gene1735;Name=YPO1752;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO1752;part=1/2;pseudo=true
AL590842.1	EMBL	pseudogene	1992500	1992553	.	-	.	ID=gene1735;Name=YPO1752;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO1752;part=2/2;pseudo=true
AL590842.1	EMBL	CDS	1994513	1996540	.	-	0	ID=cds1701;Parent=gene1735;Dbxref=PSEUDO:CAL20392.1;Note=This CDS is disrupted by the insertion of IS100 element. Similar to the internal region of Pseudomonas aeruginosa hypothetical protein PA1181 TR:Q9I4F7 (EMBL:AE004548) (1120 aa) fasta scores: E(): 4.7e-53%2C32.423%25 id in 586 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004548;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	CDS	1992500	1992553	.	-	0	ID=cds1701;Parent=gene1735;Dbxref=PSEUDO:CAL20392.1;Note=This CDS is disrupted by the insertion of IS100 element. Similar to the internal region of Pseudomonas aeruginosa hypothetical protein PA1181 TR:Q9I4F7 (EMBL:AE004548) (1120 aa) fasta scores: E(): 4.7e-53%2C32.423%25 id in 586 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004548;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	1995143	1995337	.	-	.	ID=id4107;Note=Pfam match to entry PF00989 PAS%2C PAS domain%2C score 38.90%2C E-value 3.7e-09;gbkey=misc_feature;inference=protein motif:PF00989
AL590842.1	EMBL	sequence_feature	1995392	1995520	.	-	.	ID=id4108;Note=Pfam match to entry PF00785 PAC%2C PAC motif%2C score 24.10%2C E-value 3.1e-05;gbkey=misc_feature;inference=protein motif:PF00785
AL590842.1	EMBL	sequence_feature	1995575	1995742	.	-	.	ID=id4109;Note=Pfam match to entry PF00989 PAS%2C PAS domain%2C score 10.00%2C E-value 0.38;gbkey=misc_feature;inference=protein motif:PF00989
AL590842.1	EMBL	sequence_feature	1995776	1995886	.	-	.	ID=id4110;Note=Pfam match to entry PF00785 PAC%2C PAC motif%2C score 25.00%2C E-value 1.8e-05;gbkey=misc_feature;inference=protein motif:PF00785
AL590842.1	EMBL	sequence_feature	1995962	1996126	.	-	.	ID=id4111;Note=Pfam match to entry PF00989 PAS%2C PAS domain%2C score 21.20%2C E-value 0.0003;gbkey=misc_feature;inference=protein motif:PF00989
AL590842.1	EMBL	sequence_feature	1996160	1996270	.	-	.	ID=id4112;Note=Pfam match to entry PF00785 PAC%2C PAC motif%2C score 24.40%2C E-value 2.6e-05;gbkey=misc_feature;inference=protein motif:PF00785
AL590842.1	EMBL	sequence_feature	1996343	1996471	.	-	.	ID=id4113;Note=Pfam match to entry PF00989 PAS%2C PAS domain%2C score 22.70%2C E-value 0.00011;gbkey=misc_feature;inference=protein motif:PF00989
AL590842.1	EMBL	repeat_region	1992560	1994513	.	+	.	ID=id4114;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	1992560	1992587	.	+	.	ID=id4115;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	1992646	1993668	.	+	.	ID=gene1736;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO1750
AL590842.1	EMBL	CDS	1992646	1993668	.	+	0	ID=cds1702;Parent=gene1736;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL20393.1;Name=CAL20393.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL20393.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1992670	1992753	.	+	.	ID=id4116;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	sequence_feature	1992697	1992762	.	+	.	ID=id4117;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	1992991	1993524	.	+	.	ID=id4118;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	gene	1993665	1994447	.	+	.	ID=gene1737;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO1751
AL590842.1	EMBL	CDS	1993665	1994447	.	+	0	ID=cds1703;Parent=gene1737;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL20394.1;Name=CAL20394.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL20394.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1993833	1994372	.	+	.	ID=id4119;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	1993992	1994015	.	+	.	ID=id4120;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	INVERTED	1994486	1994513	.	-	.	ID=id4121;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	sequence_feature	1994504	1994968	.	-	.	ID=id4122;Note=Pfam match to entry PF00990 DUF9%2C Domain of unknown function DUF9%2C score 156.20%2C E-value 5.6e-43;gbkey=misc_feature;inference=protein motif:PF00990
AL590842.1	EMBL	gene	1996899	1999175	.	+	.	ID=gene1738;Name=fcuA;gbkey=Gene;gene=fcuA;gene_biotype=protein_coding;locus_tag=YPO1753
AL590842.1	EMBL	CDS	1996899	1999175	.	+	0	ID=cds1704;Parent=gene1738;Dbxref=GOA:Q0WG36,InterPro:IPR000531,InterPro:IPR010105,InterPro:IPR010916,InterPro:IPR010917,InterPro:IPR012910,UniProtKB/TrEMBL:Q0WG36,NCBI_GP:CAL20395.1;Name=CAL20395.1;Note=Similar to Yersinia enterocolitica ferrichrome receptor FcuA SW:FCUA_YEREN (Q05202) (758 aa) fasta scores: E(): 0%2C 83.9%25 id in 762 aa%2C and to Bordetella bronchiseptica putative ferric siderophore receptor BfrB TR:P94265 (EMBL:U77671) (734 aa) fasta scores: E(): 0%2C38.9%25 id in 730 aa;gbkey=CDS;gene=fcuA;inference=similar to sequence:INSDC:U77671;product=ferrichrome receptor protein;protein_id=CAL20395.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1998846	1999172	.	+	.	ID=id4123;Note=Pfam match to entry PF00593 TonB_boxC%2C TonB dependent receptor C-terminal region%2C score 104.30%2C E-value 1.2e-27;gbkey=misc_feature;gene=fcuA;inference=protein motif:PF00593
AL590842.1	EMBL	sequence_feature	1999119	1999172	.	+	.	ID=id4124;Note=PS01156 TonB-dependent receptor proteins signature 2.;gbkey=misc_feature;gene=fcuA;inference=protein motif:ProSite:PS01156
AL590842.1	EMBL	gene	1999336	1999905	.	-	.	ID=gene1739;Name=yebN;gbkey=Gene;gene=yebN;gene_biotype=protein_coding;locus_tag=YPO1754
AL590842.1	EMBL	CDS	1999336	1999905	.	-	0	ID=cds1705;Parent=gene1739;Dbxref=GOA:Q8ZFF8,InterPro:IPR003810,InterPro:IPR022929,NCBI_GP:CAL20396.1;Name=CAL20396.1;Note=Similar to Escherichia coli hypothetical 22.1 kDa protein in manz-cspc intergenic region yebN SW:YEBN_ECOLI (P76264) (206 aa) fasta scores: E(): 0%2C 67.4%25 id in 187 aa%2Cand to Pseudomonas aeruginosa hypothetical protein PA2910 TR:AAG06298 (Q9HZT7) (189 aa) fasta scores: E(): 0%2C 60.8%25 id in 186 aa;gbkey=CDS;gene=yebN;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL20396.1;transl_table=11
AL590842.1	EMBL	sequence_feature	1999348	1999404	.	-	.	ID=id4125;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yebN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1999444	1999509	.	-	.	ID=id4126;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yebN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1999522	1999587	.	-	.	ID=id4127;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yebN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1999648	1999692	.	-	.	ID=id4128;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yebN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1999723	1999788	.	-	.	ID=id4129;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yebN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	1999828	1999893	.	-	.	ID=id4130;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yebN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2000334	2000795	.	-	.	ID=gene1740;Name=yobD;gbkey=Gene;gene=yobD;gene_biotype=protein_coding;locus_tag=YPO1755
AL590842.1	EMBL	CDS	2000334	2000795	.	-	0	ID=cds1706;Parent=gene1740;Dbxref=GOA:Q8ZFF7,InterPro:IPR009328,NCBI_GP:CAL20397.1;Name=CAL20397.1;Note=Similar to Escherichia coli hypothetical 17.6 kDa protein in manZ-cspC intergenic region yobD SW:YOBD_ECOLI (P76263) (152 aa) fasta scores: E(): 0%2C 61.2%25 id in 152 aa;gbkey=CDS;gene=yobD;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL20397.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2000535	2000591	.	-	.	ID=id4131;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=yobD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2000604	2000654	.	-	.	ID=id4132;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=yobD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2000718	2000783	.	-	.	ID=id4133;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=yobD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2000995	2001882	.	-	.	ID=gene1741;Name=gptB;gbkey=Gene;gene=gptB;gene_biotype=protein_coding;gene_synonym=manZ,ptsM;locus_tag=YPO1756
AL590842.1	EMBL	CDS	2000995	2001882	.	-	0	ID=cds1707;Parent=gene1741;Dbxref=GOA:Q7CHV1,InterPro:IPR004704,InterPro:IPR018405,UniProtKB/TrEMBL:Q7CHV1,NCBI_GP:CAL20398.1;Name=CAL20398.1;Note=Similar to Escherichia coli PTS system%2Cmannose-specific IID component ManZ or PtsM or GptB SW:PTND_ECOLI (P08188) (286 aa) fasta scores: E(): 0%2C 86.6%25 id in 291 aa%2C and to Bacillus subtilis PTS system%2Cfructose-specific IID component LevG SW:PTFD_BACSU (P26382) (275 aa) fasta scores: E(): 0%2C 60.4%25 id in 273 aa. This CDS has a small insertion at the N-terminal end relative to that of E.coli;gbkey=CDS;gene=gptB;inference=protein motif:TMHMM:2.0;product=PTS system%2C mannose-specific IID component;protein_id=CAL20398.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2001004	2001069	.	-	.	ID=id4134;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=gptB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2001385	2001450	.	-	.	ID=id4135;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=gptB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2001889	2002686	.	-	.	ID=gene1742;Name=manY;gbkey=Gene;gene=manY;gene_biotype=protein_coding;gene_synonym=pel,ptsP;locus_tag=YPO1757
AL590842.1	EMBL	CDS	2001889	2002686	.	-	0	ID=cds1708;Parent=gene1742;Dbxref=GOA:Q0WG32,InterPro:IPR004700,InterPro:IPR018404,UniProtKB/TrEMBL:Q0WG32,NCBI_GP:CAL20399.1;Name=CAL20399.1;Note=Similar to Escherichia coli PTS system%2Cmannose-specific IIC component ManY or PtsP or Pel SW:PTNC_ECOLI (P08187) (266 aa) fasta scores: E(): 0%2C 87.7%25 id in 269 aa%2C and to Klebsiella pneumoniae PTS system%2Csorbose-specific IIC component SorA SW:PTRC_KLEPN (P37082) (266 aa) fasta scores: E(): 0%2C 61.3%25 id in 266 aa;gbkey=CDS;gene=manY;inference=protein motif:TMHMM:2.0;product=PTS system%2C mannose-specific IIC component;protein_id=CAL20399.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2001970	2002035	.	-	.	ID=id4136;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=manY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2002081	2002146	.	-	.	ID=id4137;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=manY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2002210	2002275	.	-	.	ID=id4138;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=manY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2002336	2002401	.	-	.	ID=id4139;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=manY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2002423	2002488	.	-	.	ID=id4140;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=manY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2002519	2002584	.	-	.	ID=id4141;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=manY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2002606	2002671	.	-	.	ID=id4142;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=manY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2002639	2002671	.	-	.	ID=id4143;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=manY;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	2002778	2003752	.	-	.	ID=gene1743;Name=gptB;gbkey=Gene;gene=gptB;gene_biotype=protein_coding;gene_synonym=manX,ptsL;locus_tag=YPO1758
AL590842.1	EMBL	CDS	2002778	2003752	.	-	0	ID=cds1709;Parent=gene1743;Dbxref=GOA:Q7CHV2,InterPro:IPR004701,InterPro:IPR004720,InterPro:IPR013789,InterPro:IPR018455,UniProtKB/TrEMBL:Q7CHV2,NCBI_GP:CAL20400.1;Name=CAL20400.1;Note=Similar to Escherichia coli PTS system%2Cmannose-specific IIAB component ManX or PtsL or GptB SW:PTNA_ECOLI (P08186) (322 aa) fasta scores: E(): 0%2C 81.4%25 id in 323 aa%2C and to Streptococcus salivarius mannose-specific phosphotransferase system component iiab manL TR:Q9S4L5 (EMBL:AF130465) (330 aa) fasta scores: E(): 0%2C 42.5%25 id in 332 aa;gbkey=CDS;gene=gptB;inference=similar to sequence:INSDC:AF130465;product=PTS system%2C mannose-specific IIAB component;protein_id=CAL20400.1;transl_table=11
AL590842.1	EMBL	gene	2004523	2005917	.	+	.	ID=gene1744;Name=yoaE;gbkey=Gene;gene=yoaE;gene_biotype=protein_coding;locus_tag=YPO1759
AL590842.1	EMBL	CDS	2004523	2005917	.	+	0	ID=cds1710;Parent=gene1744;Dbxref=GOA:Q7CHV3,InterPro:IPR000644,InterPro:IPR005170,InterPro:IPR005496,InterPro:IPR016166,InterPro:IPR016169,UniProtKB/TrEMBL:Q7CHV3,NCBI_GP:CAL20401.1;Name=CAL20401.1;Note=Similar to Escherichia coli hypothetical 56.5 kDa protein in sdaA-manX intergenic region yoaE SW:YOAE_ECOLI (P76262) (518 aa) fasta scores: E(): 0%2C 71.6%25 id in 457 aa%2Cand to Neisseria meningitidis conserved hypothetical integral membrane protein Nma1694 TR:Q9JTN9 (EMBL:AL162756) (518 aa) fasta scores: E(): 0%2C 45.1%25 id in 466 aa;gbkey=CDS;gene=yoaE;inference=similar to sequence:INSDC:AL162756;product=putative membrane protein;protein_id=CAL20401.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2004547	2004615	.	+	.	ID=id4144;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yoaE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2004736	2004795	.	+	.	ID=id4145;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yoaE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2004814	2004882	.	+	.	ID=id4146;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yoaE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2004925	2004993	.	+	.	ID=id4147;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yoaE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2005006	2005065	.	+	.	ID=id4148;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yoaE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2005273	2005437	.	+	.	ID=id4149;Note=Pfam match to entry PF00571 CBS%2C CBS domain%2C score 32.80%2C E-value 8.1e-06;gbkey=misc_feature;gene=yoaE;inference=protein motif:PF00571
AL590842.1	EMBL	sequence_feature	2005459	2005620	.	+	.	ID=id4150;Note=Pfam match to entry PF00571 CBS%2C CBS domain%2C score 35.40%2C E-value 1.3e-06;gbkey=misc_feature;gene=yoaE;inference=protein motif:PF00571
AL590842.1	EMBL	gene	2006019	2006486	.	-	.	ID=gene1745;Name=hpaR;gbkey=Gene;gene=hpaR;gene_biotype=protein_coding;gene_synonym=hpcR;locus_tag=YPO1760
AL590842.1	EMBL	CDS	2006019	2006486	.	-	0	ID=cds1711;Parent=gene1745;Dbxref=GOA:Q0WG29,InterPro:IPR000835,InterPro:IPR011991,InterPro:IPR012712,UniProtKB/TrEMBL:Q0WG29,NCBI_GP:CAL20402.1;Name=CAL20402.1;Note=Similar to Escherichia coli homoprotocatechuate degradative operon repressor HpcR or HpaR SW:HPCR_ECOLI (Q07095) (148 aa) fasta scores: E(): 0%2C 66.4%25 id in 149 aa%2Cand to Salmonella dublin HpaR TR:Q9RPU4 (EMBL:AF144422) (146 aa) fasta scores: E(): 0%2C 70.5%25 id in 139 aa;gbkey=CDS;gene=hpaR;inference=similar to sequence:INSDC:AF144422;product=homoprotocatechuate degradative operon repressor;protein_id=CAL20402.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2006091	2006402	.	-	.	ID=id4151;Note=Pfam match to entry PF01047 MarR%2C MarR family%2C score 98.70%2C E-value 1.2e-25;gbkey=misc_feature;gene=hpaR;inference=protein motif:PF01047
AL590842.1	EMBL	pseudogene	2006870	2008263	.	+	.	ID=gene1746;Name=hpaG;gbkey=Gene;gene=hpaG;gene_biotype=pseudogene;gene_synonym=hpcE;locus_tag=YPO1761;pseudo=true
AL590842.1	EMBL	CDS	2006870	2008263	.	+	0	ID=cds1712;Parent=gene1746;Note=Similar to Escherichia coli 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpaG SW:HPAG_ECOLI (Q46978) (429 aa) fasta scores: E(): 0%2C 61.4%25 id in 456 aa%2C and to Escherichia coli homoprotocatechuate catabolism bifunctional isomerase/decarboxylase SW:HPCE_ECOLI (P37352) (405 aa) fasta scores: E(): 0%2C 60.7%25 id in 433 aa. This CDS is frameshifted%2C possibly following an insertion event%2C after codon 204. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=hpaG;product=4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	2007676	2008173	.	+	.	ID=id4152;Note=Pfam match to entry PF01557 FAA_hydrolase%2CFumarylacetoacetate (FAA) hydrolase family%2C score 273.20%2CE-value 3.3e-78;gbkey=misc_feature;gene=hpaG;inference=protein motif:PF01557
AL590842.1	EMBL	gene	2008260	2009657	.	+	.	ID=gene1747;Name=hpaE;gbkey=Gene;gene=hpaE;gene_biotype=protein_coding;locus_tag=YPO1763
AL590842.1	EMBL	CDS	2008260	2009657	.	+	0	ID=cds1713;Parent=gene1747;Dbxref=GOA:Q7CHV4,InterPro:IPR015590,InterPro:IPR016160,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,InterPro:IPR029510,UniProtKB/TrEMBL:Q7CHV4,NCBI_GP:CAL20404.1;Name=CAL20404.1;Note=Similar to Escherichia coli 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase HpaE TR:Q46979 (EMBL:Z37980) (488 aa) fasta scores: E(): 0%2C 81.1%25 id in 488 aa%2C and to Escherichia coli 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase HpcC SW:HPCC_ECOLI (P42269) (468 aa) fasta scores: E(): 0%2C 79.3%25 id in 464 aa;gbkey=CDS;gene=hpaE;inference=similar to sequence:INSDC:Z37980;product=5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase;protein_id=CAL20404.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2008275	2009624	.	+	.	ID=id4153;Note=Pfam match to entry PF00171 aldedh%2C Aldehyde dehydrogenase family%2C score 561.20%2C E-value 6.9e-165;gbkey=misc_feature;gene=hpaE;inference=protein motif:PF00171
AL590842.1	EMBL	sequence_feature	2008986	2009009	.	+	.	ID=id4154;Note=PS00687 Aldehyde dehydrogenases glutamic acid active site.;gbkey=misc_feature;gene=hpaE;inference=protein motif:ProSite:PS00687
AL590842.1	EMBL	sequence_feature	2009070	2009105	.	+	.	ID=id4155;Note=PS00070 Aldehyde dehydrogenases cysteine active site.;gbkey=misc_feature;gene=hpaE;inference=protein motif:ProSite:PS00070
AL590842.1	EMBL	gene	2009776	2010633	.	+	.	ID=gene1748;Name=hpaD;gbkey=Gene;gene=hpaD;gene_biotype=protein_coding;locus_tag=YPO1764
AL590842.1	EMBL	CDS	2009776	2010633	.	+	0	ID=cds1714;Parent=gene1748;Dbxref=GOA:Q7CHV5,InterPro:IPR004183,InterPro:IPR011984,UniProtKB/TrEMBL:Q7CHV5,NCBI_GP:CAL20405.1;Name=CAL20405.1;Note=Similar to Escherichia coli 3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase HpaD TR:Q46980 (EMBL:Z37980) (282 aa) fasta scores: E(): 0%2C 86.4%25 id in 280 aa%2C and to Escherichia coli 3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase HpcB SW:HPCB_ECOLI (Q05353) (275 aa) fasta scores: E(): 0%2C 85.3%25 id in 259 aa;gbkey=CDS;gene=hpaD;inference=similar to sequence:INSDC:Z37980;product=3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase;protein_id=CAL20405.1;transl_table=11
AL590842.1	EMBL	gene	2010658	2011056	.	+	.	ID=gene1749;Name=hpaF;gbkey=Gene;gene=hpaF;gene_biotype=protein_coding;locus_tag=YPO1765
AL590842.1	EMBL	CDS	2010658	2011056	.	+	0	ID=cds1715;Parent=gene1749;Dbxref=GOA:Q7CHV6,InterPro:IPR004220,InterPro:IPR014347,UniProtKB/TrEMBL:Q7CHV6,NCBI_GP:CAL20406.1;Name=CAL20406.1;Note=Similar to Escherichia coli 5-carboxymethyl-2-hydroxymuconate delta-isomerase HpaF TR:Q46981 (EMBL:Z37980) (125 aa) fasta scores: E(): 0%2C71.8%25 id in 124 aa%2C and to Escherichia coli 5-carboxymethyl-2-hydroxymuconate delta-isomerase HpcD SW:HPCD_ECOLI (Q05354) (125 aa) fasta scores: E(): 0%2C 71.0%25 id in 124 aa;gbkey=CDS;gene=hpaF;inference=similar to sequence:INSDC:Z37980;product=5-carboxymethyl-2-hydroxymuconate delta-isomerase;protein_id=CAL20406.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2011021	2011053	.	+	.	ID=id4156;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=hpaF;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	2011050	2011853	.	+	.	ID=gene1750;Name=hpaH;gbkey=Gene;gene=hpaH;gene_biotype=protein_coding;gene_synonym=hpcG;locus_tag=YPO1766
AL590842.1	EMBL	CDS	2011050	2011853	.	+	0	ID=cds1716;Parent=gene1750;Dbxref=GOA:Q7CHV7,InterPro:IPR002529,InterPro:IPR011234,InterPro:IPR012690,UniProtKB/TrEMBL:Q7CHV7,NCBI_GP:CAL20407.1;Name=CAL20407.1;Note=Similar to Escherichia coli 2-oxo-hept-3-ene-1%2C7-dioate hydratase Hpah or hpcG TR:Q46982 (EMBL:Z37980) (267 aa) fasta scores: E(): 0%2C79.4%25 id in 267 aa%2C and to Escherichia coli 2-oxo-hepta-3-ene-1%2C7-dioic acid hydratase HpcG SW:HPCG_ECOLI (P42270) (264 aa) fasta scores: E(): 0%2C 74.9%25 id in 267 aa;gbkey=CDS;gene=hpaH;inference=similar to sequence:INSDC:Z37980;product=2-oxo-hept-3-ene-1%2C7-dioate hydratase;protein_id=CAL20407.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2011059	2011733	.	+	.	ID=id4157;Note=Pfam match to entry PF01689 Hyratase_decarb%2CHydratase/decarboxylase%2C score 418.70%2C E-value 5.4e-122;gbkey=misc_feature;gene=hpaH;inference=protein motif:PF01689
AL590842.1	EMBL	gene	2011864	2012670	.	+	.	ID=gene1751;Name=hpaI;gbkey=Gene;gene=hpaI;gene_biotype=protein_coding;gene_synonym=hpcH;locus_tag=YPO1767
AL590842.1	EMBL	CDS	2011864	2012670	.	+	0	ID=cds1717;Parent=gene1751;Dbxref=GOA:Q0WG24,InterPro:IPR005000,InterPro:IPR012689,InterPro:IPR015813,UniProtKB/TrEMBL:Q0WG24,NCBI_GP:CAL20408.1;Name=CAL20408.1;Note=Similar to Escherichia coli 2%2C4-dihydroxyhept-2-ene-1%2C7-dioic acid aldolase HpcH or HpaI SW:HPAI_ECOLI (Q47098) (262 aa) fasta scores: E(): 0%2C73.7%25 id in 251 aa%2C and to Salmonella dublin 2%2C4-dihydroxyhept-2-ene-1%2C7-dioic acid aldolase HpaI SW:HPAI_SALDU (Q9RPV0) (263 aa) fasta scores: E(): 0%2C 74.1%25 id in 251 aa;gbkey=CDS;gene=hpaI;product=2%2C4-dihydroxyhept-2-ene-1%2C7-dioic acid aldolase;protein_id=CAL20408.1;transl_table=11
AL590842.1	EMBL	gene	2012696	2014063	.	+	.	ID=gene1752;Name=hpaX;gbkey=Gene;gene=hpaX;gene_biotype=protein_coding;locus_tag=YPO1768
AL590842.1	EMBL	CDS	2012696	2014063	.	+	0	ID=cds1718;Parent=gene1752;Dbxref=GOA:Q7CHV8,InterPro:IPR011701,InterPro:IPR012707,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q7CHV8,NCBI_GP:CAL20409.1;Name=CAL20409.1;Note=Similar to Escherichia coli putative 4-hydroxyphenylacetate permease HpaX TR:Q46984 (EMBL:Z37980) (458 aa) fasta scores: E(): 0%2C 75.9%25 id in 456 aa%2C and to Salmonella dublin HpaX TR:Q9RPV1 (EMBL:AF144422) (458 aa) fasta scores: E(): 0%2C 75.9%25 id in 456 aa;gbkey=CDS;gene=hpaX;inference=similar to sequence:INSDC:Z37980;product=putative 4-hydroxyphenylacetate permease;protein_id=CAL20409.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2012801	2014054	.	+	.	ID=id4158;Note=Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporter%2C score -80.10%2C E-value 0.00053;gbkey=misc_feature;gene=hpaX;inference=protein motif:PF00083
AL590842.1	EMBL	sequence_feature	2012801	2012869	.	+	.	ID=id4159;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=hpaX;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2012912	2012980	.	+	.	ID=id4160;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=hpaX;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2012999	2013058	.	+	.	ID=id4161;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=hpaX;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2013086	2013154	.	+	.	ID=id4162;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=hpaX;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2013179	2013247	.	+	.	ID=id4163;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=hpaX;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2013275	2013343	.	+	.	ID=id4164;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=hpaX;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2013494	2013562	.	+	.	ID=id4165;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=hpaX;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2013599	2013667	.	+	.	ID=id4166;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=hpaX;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2013704	2013757	.	+	.	ID=id4167;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=hpaX;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2013767	2013835	.	+	.	ID=id4168;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=hpaX;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2013872	2013940	.	+	.	ID=id4169;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=hpaX;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2013968	2014027	.	+	.	ID=id4170;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=hpaX;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2014131	2015693	.	+	.	ID=gene1753;Name=hpaB;gbkey=Gene;gene=hpaB;gene_biotype=protein_coding;locus_tag=YPO1769
AL590842.1	EMBL	CDS	2014131	2015693	.	+	0	ID=cds1719;Parent=gene1753;Dbxref=GOA:Q7CHV9,InterPro:IPR004925,InterPro:IPR006091,InterPro:IPR009075,InterPro:IPR009100,InterPro:IPR012688,InterPro:IPR024674,InterPro:IPR024677,InterPro:IPR024719,UniProtKB/TrEMBL:Q7CHV9,NCBI_GP:CAL20410.1;Name=CAL20410.1;Note=Similar to Escherichia coli 4-hydroxyphenylacetate 3-monooxygenase HpaB TR:Q57160 (EMBL:Z37980) (520 aa) fasta scores: E(): 0%2C 81.3%25 id in 520 aa%2C and to Klebsiella pneumoniae 4-hydroxyphenylacetate 3-monooxygenase HpaA TR:Q48440 (EMBL:L41068) (520 aa) fasta scores: E(): 0%2C81.3%25 id in 520 aa;gbkey=CDS;gene=hpaB;inference=similar to sequence:INSDC:Z37980;product=4-hydroxyphenylacetate 3-monooxygenase;protein_id=CAL20410.1;transl_table=11
AL590842.1	EMBL	gene	2015714	2016211	.	+	.	ID=gene1754;Name=hpaC;gbkey=Gene;gene=hpaC;gene_biotype=protein_coding;locus_tag=YPO1770
AL590842.1	EMBL	CDS	2015714	2016211	.	+	0	ID=cds1720;Parent=gene1754;Dbxref=GOA:Q7CHW0,InterPro:IPR002563,InterPro:IPR011982,InterPro:IPR012349,UniProtKB/TrEMBL:Q7CHW0,NCBI_GP:CAL20411.1;Name=CAL20411.1;Note=Similar to Escherichia coli 4-hydroxyphenylacetate 3-monooxygenase coupling protein HpaC TR:Q57501 (EMBL:Z29081) (170 aa) fasta scores: E(): 0%2C 72.0%25 id in 161 aa%2C and to Salmonella dublin HpaC TR:Q9RPU2 (EMBL:AF144422) (170 aa) fasta scores: E(): 0%2C 73.0%25 id in 159 aa;gbkey=CDS;gene=hpaC;inference=similar to sequence:INSDC:Z29081;product=4-hydroxyphenylacetate 3-monooxygenase coupling protein;protein_id=CAL20411.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2015756	2016205	.	+	.	ID=id4171;Note=Pfam match to entry PF01613 Flavin_Reduct%2C Flavin reductase like domain%2C score 211.40%2C E-value 1.4e-59;gbkey=misc_feature;gene=hpaC;inference=protein motif:PF01613
AL590842.1	EMBL	gene	2016491	2017855	.	-	.	ID=gene1755;Name=sdaA;gbkey=Gene;gene=sdaA;gene_biotype=protein_coding;locus_tag=YPO1771
AL590842.1	EMBL	CDS	2016491	2017855	.	-	0	ID=cds1721;Parent=gene1755;Dbxref=GOA:Q7CHW1,InterPro:IPR004644,InterPro:IPR005130,InterPro:IPR005131,InterPro:IPR029009,UniProtKB/TrEMBL:Q7CHW1,NCBI_GP:CAL20412.1;Name=CAL20412.1;Note=Similar to Escherichia coli L-serine dehydratase 1 SdaA SW:SDHL_ECOLI (P16095) (454 aa) fasta scores: E(): 0%2C84.1%25 id in 453 aa%2C and to Escherichia coli L-serine dehydratase 2 SdaB SW:SDHM_ECOLI (P30744) (455 aa) fasta scores: E(): 0%2C 76.2%25 id in 454 aa%2C and to Escherichia coli L-serine dehydratase TdcG SW:TDCG_ECOLI (P42630) (454 aa) fasta scores: E(): 0%2C 71.5%25 id in 453 aa;gbkey=CDS;gene=sdaA;product=L-serine dehydratase;protein_id=CAL20412.1;transl_table=11
AL590842.1	EMBL	gene	2018563	2019162	.	-	.	ID=gene1756;Name=YPO1772;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1772
AL590842.1	EMBL	CDS	2018563	2019162	.	-	0	ID=cds1722;Parent=gene1756;Dbxref=GOA:Q7CHW2,InterPro:IPR000059,InterPro:IPR000086,InterPro:IPR015797,InterPro:IPR023735,NCBI_GP:CAL20413.1;Name=CAL20413.1;Note=Similar to Escherichia coli hypothetical protein YeaB SW:YEAB_ECOLI (P43337) (192 aa) fasta scores: E(): 0%2C57.4%25 id in 190 aa;gbkey=CDS;product=MutT-family protein;protein_id=CAL20413.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2018656	2019048	.	-	.	ID=id4172;Note=Pfam match to entry PF00293 mutT%2C Bacterial mutT protein%2C score 59.20%2C E-value 9.2e-14;gbkey=misc_feature;inference=protein motif:PF00293
AL590842.1	EMBL	sequence_feature	2018935	2018997	.	-	.	ID=id4173;Note=PS01293 Uncharacterized protein family UPF0035 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01293
AL590842.1	EMBL	gene	2019159	2020535	.	-	.	ID=gene1757;Name=pabB;gbkey=Gene;gene=pabB;gene_biotype=protein_coding;locus_tag=YPO1773
AL590842.1	EMBL	CDS	2019159	2020535	.	-	0	ID=cds1723;Parent=gene1757;Dbxref=GOA:Q7CHW3,InterPro:IPR005801,InterPro:IPR005802,InterPro:IPR006805,InterPro:IPR015890,InterPro:IPR019999,UniProtKB/TrEMBL:Q7CHW3,NCBI_GP:CAL20414.1;Name=CAL20414.1;Note=Similar to Salmonella typhimurium para-aminobenzoate synthase component I PabB SW:PABB_SALTY (P12680) (454 aa) fasta scores: E(): 0%2C 67.6%25 id in 447 aa%2C and to Escherichia coli para-aminobenzoate synthase component I PabB SW:PABB_ECOLI (P05041) (453 aa) fasta scores: E(): 0%2C66.7%25 id in 447 aa;gbkey=CDS;gene=pabB;product=para-aminobenzoate synthase component I;protein_id=CAL20414.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2019162	2019173	.	-	.	ID=id4174;Note=PS00294 Prenyl group binding site (CAAX box).;gbkey=misc_feature;gene=pabB;inference=protein motif:ProSite:PS00294
AL590842.1	EMBL	sequence_feature	2019180	2019968	.	-	.	ID=id4175;Note=Pfam match to entry PF00425 chorismate_bind%2Cchorismate binding enzyme%2C score 449.80%2C E-value 2.3e-131;gbkey=misc_feature;gene=pabB;inference=protein motif:PF00425
AL590842.1	EMBL	gene	2020700	2020957	.	+	.	ID=gene1758;Name=YPO1774;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1774
AL590842.1	EMBL	CDS	2020700	2020957	.	+	0	ID=cds1724;Parent=gene1758;Dbxref=InterPro:IPR005371,NCBI_GP:CAL20415.1;Name=CAL20415.1;Note=Similar to Escherichia coli hypothetical protein YoaH SW:YOAH_ECOLI (P76260) (59 aa) fasta scores: E(): 1.1e-09%2C 59.3%25 id in 59 aa%2C and to Salmonella typhimurium hypothetical protein SW:YOAH_SALTY (P56505) (42 aa) fasta scores: E(): 4.4e-08%2C 73.8%25 id in 42 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL20415.1;transl_table=11
AL590842.1	EMBL	gene	2021083	2022264	.	-	.	ID=gene1759;Name=purT;gbkey=Gene;gene=purT;gene_biotype=protein_coding;locus_tag=YPO1775
AL590842.1	EMBL	CDS	2021083	2022264	.	-	0	ID=cds1725;Parent=gene1759;Dbxref=GOA:Q7CHW4,InterPro:IPR003135,InterPro:IPR005862,InterPro:IPR011054,InterPro:IPR011761,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016185,NCBI_GP:CAL20416.1;Name=CAL20416.1;Note=Similar to Escherichia coli phosphoribosylglycinamide formyltransferase 2 PurT SW:PURT_ECOLI (P33221) (391 aa) fasta scores: E(): 0%2C 78.7%25 id in 389 aa%2C and to Vibrio cholerae phosphoribosylglycinamide formyltransferase 2 Vc1228 TR:Q9KSM8 (EMBL:AE004202) (393 aa) fasta scores: E(): 0%2C70.1%25 id in 391 aa;gbkey=CDS;gene=purT;inference=similar to sequence:INSDC:AE004202;product=phosphoribosylglycinamide formyltransferase;protein_id=CAL20416.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2021638	2022144	.	-	.	ID=id4176;Note=Pfam match to entry PF02222 ATP-grasp%2C ATP-grasp domain%2C score 137.90%2C E-value 1.8e-37;gbkey=misc_feature;gene=purT;inference=protein motif:PF02222
AL590842.1	EMBL	gene	2022577	2023959	.	+	.	ID=gene1760;Name=dbpA;gbkey=Gene;gene=dbpA;gene_biotype=protein_coding;locus_tag=YPO1776
AL590842.1	EMBL	CDS	2022577	2023959	.	+	0	ID=cds1726;Parent=gene1760;Dbxref=GOA:Q7CHW5,InterPro:IPR000629,InterPro:IPR001650,InterPro:IPR005580,InterPro:IPR011545,InterPro:IPR014001,InterPro:IPR014014,InterPro:IPR027417,InterPro:IPR028619,UniProtKB/TrEMBL:Q7CHW5,NCBI_GP:CAL20417.1;Name=CAL20417.1;Note=Similar to Escherichia coli ATP-dependent RNA helicase DbpA SW:DBPA_ECOLI (P21693) (457 aa) fasta scores: E(): 0%2C 68.8%25 id in 459 aa%2C and to Vibrio cholerae ATP-dependent RNA helicase DbpA Vc2564 TR:Q9KP15 (EMBL:AE004325) (460 aa) fasta scores: E(): 0%2C 54.0%25 id in 461 aa;gbkey=CDS;gene=dbpA;inference=similar to sequence:INSDC:AE004325;product=ATP-dependent RNA helicase;protein_id=CAL20417.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2022625	2023236	.	+	.	ID=id4177;Note=Pfam match to entry PF00270 DEAD%2C DEAD/DEAH box helicase%2C score 204.60%2C E-value 9e-64;gbkey=misc_feature;gene=dbpA;inference=protein motif:PF00270
AL590842.1	EMBL	sequence_feature	2022718	2022741	.	+	.	ID=id4178;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=dbpA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	2023030	2023056	.	+	.	ID=id4179;Note=PS00039 DEAD-box subfamily ATP-dependent helicases signature.;gbkey=misc_feature;gene=dbpA;inference=protein motif:ProSite:PS00039
AL590842.1	EMBL	sequence_feature	2023342	2023587	.	+	.	ID=id4180;Note=Pfam match to entry PF00271 helicase_C%2C Helicases conserved C-terminal domain%2C score 120.80%2C E-value 2.5e-32;gbkey=misc_feature;gene=dbpA;inference=protein motif:PF00271
AL590842.1	EMBL	gene	2024053	2024373	.	+	.	ID=gene1761;Name=YPO1777;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1777
AL590842.1	EMBL	CDS	2024053	2024373	.	+	0	ID=cds1727;Parent=gene1761;Dbxref=InterPro:IPR009813,UniProtKB/TrEMBL:Q7CHW6,NCBI_GP:CAL20418.1;Name=CAL20418.1;Note=Similar to Escherichia coli hypothetical protein YebG SW:YEBG_ECOLI (P33220) (96 aa) fasta scores: E(): 9.2e-17%2C 55.8%25 id in 95 aa%2C and to Vibrio cholerae hypothetical protein VC2326 TR:Q9KPP0 (EMBL:AE004303) (102 aa) fasta scores: E(): 9.4e-11%2C 62.1%25 id in 66 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004303;product=conserved hypothetical protein;protein_id=CAL20418.1;transl_table=11
AL590842.1	EMBL	gene	2024413	2024721	.	+	.	ID=gene1762;Name=YPO1778;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1778
AL590842.1	EMBL	CDS	2024413	2024721	.	+	0	ID=cds1728;Parent=gene1762;Dbxref=InterPro:IPR007374,InterPro:IPR008314,InterPro:IPR015947,NCBI_GP:CAL20419.1;Name=CAL20419.1;Note=Similar to Escherichia coli hypothetical protein YqfB SW:YQFB_ECOLI (Q46828) (103 aa) fasta scores: E(): 5.4e-23%2C 65.7%25 id in 99 aa%2C and to Haemophilus influenzae hypothetical protein HI1394 SW:YQFB_HAEIN (P44172) (123 aa) fasta scores: E(): 1.5e-21%2C 60.8%25 id in 97 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL20419.1;transl_table=11
AL590842.1	EMBL	gene	2024813	2025238	.	+	.	ID=gene1763;Name=YPO1779;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1779
AL590842.1	EMBL	CDS	2024813	2025238	.	+	0	ID=cds1729;Parent=gene1763;Dbxref=GOA:Q8ZFD5,InterPro:IPR020236,InterPro:IPR025603,NCBI_GP:CAL20420.1;Name=CAL20420.1;Note=Similar to Escherichia coli hypothetical 13.5 kDa lipoprotein in ptrB-purT intergenic region SW:YEBF_ECOLI (P33219) (122 aa) fasta scores: E(): 4.1e-15%2C 42.7%25 id in 117 aa%2C and to Escherichia coli colicin M immunity protein SW:IMMM_ECOLI (P18002) (141 aa) fasta scores: E(): 7.3e-05%2C27.3%25 id in 121 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL20420.1;transl_table=11
AL590842.1	EMBL	gene	2025548	2027599	.	+	.	ID=gene1764;Name=ptrB;gbkey=Gene;gene=ptrB;gene_biotype=protein_coding;gene_synonym=rlp;locus_tag=YPO1780
AL590842.1	EMBL	CDS	2025548	2027599	.	+	0	ID=cds1730;Parent=gene1764;Dbxref=GOA:Q74UT4,InterPro:IPR001375,InterPro:IPR002470,InterPro:IPR023302,InterPro:IPR029058,UniProtKB/TrEMBL:Q74UT4,NCBI_GP:CAL20421.1;Name=CAL20421.1;Note=Similar to Salmonella enterica serovar Typhimurium oligopeptidase B OpdB TR:Q9L6C8 (EMBL:AF237705) (683 aa) fasta scores: E(): 0%2C 65.3%25 id in 680 aa%2C and to Escherichia coli protease II PtrB or Tlp SW:PTRB_ECOLI (P24555) (686 aa) fasta scores: E(): 0%2C 63.8%25 id in 680 aa;gbkey=CDS;gene=ptrB;inference=similar to sequence:INSDC:AF237705;product=oligopeptidase B;protein_id=CAL20421.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2026601	2026627	.	+	.	ID=id4181;Note=PS00037 Myb DNA-binding domain repeat signature 1.;gbkey=misc_feature;gene=ptrB;inference=protein motif:ProSite:PS00037
AL590842.1	EMBL	sequence_feature	2026940	2027179	.	+	.	ID=id4182;Note=Pfam match to entry PF00326 Peptidase_S9%2C Prolyl oligopeptidase family%2C score 117.90%2C E-value 3.4e-35;gbkey=misc_feature;gene=ptrB;inference=protein motif:PF00326
AL590842.1	EMBL	gene	2028321	2029271	.	+	.	ID=gene1765;Name=pip;gbkey=Gene;gene=pip;gene_biotype=protein_coding;locus_tag=YPO1781
AL590842.1	EMBL	CDS	2028321	2029271	.	+	0	ID=cds1731;Parent=gene1765;Dbxref=GOA:Q7CHW8,InterPro:IPR000073,InterPro:IPR002410,InterPro:IPR005944,InterPro:IPR029058,UniProtKB/TrEMBL:Q7CHW8,NCBI_GP:CAL20422.1;Name=CAL20422.1;Note=Similar to Serratia marcescens proline iminopeptidase Pip TR:O32449 (EMBL:D87897) (317 aa) fasta scores: E(): 0%2C 82.2%25 id in 315 aa%2C and to Xylella fastidiosa proline iminopeptidase TR:Q9PD69 (EMBL:AE003981) (313 aa) fasta scores: E(): 0%2C 56.7%25 id in 312 aa;gbkey=CDS;gene=pip;inference=similar to sequence:INSDC:D87897;product=proline iminopeptidase;protein_id=CAL20422.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2028510	2029265	.	+	.	ID=id4183;Note=Pfam match to entry PF00561 abhydrolase%2C alpha/beta hydrolase fold%2C score 85.70%2C E-value 9.3e-22;gbkey=misc_feature;gene=pip;inference=protein motif:PF00561
AL590842.1	EMBL	gene	2029331	2029561	.	-	.	ID=gene1766;Name=holE;gbkey=Gene;gene=holE;gene_biotype=protein_coding;locus_tag=YPO1782
AL590842.1	EMBL	CDS	2029331	2029561	.	-	0	ID=cds1732;Parent=gene1766;Dbxref=GOA:Q74UT6,InterPro:IPR009052,InterPro:IPR011325,UniProtKB/TrEMBL:Q74UT6,NCBI_GP:CAL20423.1;Name=CAL20423.1;Note=Similar to Escherichia coli DNA polymerase III%2Ctheta subunit HolE SW:HOLE_ECOLI (P28689) (76 aa) fasta scores: E(): 3.5e-16%2C 64.5%25 id in 76 aa;gbkey=CDS;gene=holE;product=DNA polymerase III%2C theta subunit;protein_id=CAL20423.1;transl_table=11
AL590842.1	EMBL	gene	2029962	2030471	.	+	.	ID=gene1767;Name=ftn;gbkey=Gene;gene=ftn;gene_biotype=protein_coding;gene_synonym=ftnA,gen-165,rsgA;locus_tag=YPO1783
AL590842.1	EMBL	CDS	2029962	2030471	.	+	0	ID=cds1733;Parent=gene1767;Dbxref=GOA:Q0WG08,InterPro:IPR001519,InterPro:IPR008331,InterPro:IPR009040,InterPro:IPR009078,InterPro:IPR012347,UniProtKB/TrEMBL:Q0WG08,NCBI_GP:CAL20424.1;Name=CAL20424.1;Note=Similar to Escherichia coli ferritin 1 FtnA or Ftn or RsgA or Gen-165 SW:FTNA_ECOLI (P23887) (165 aa) fasta scores: E(): 0%2C 64.6%25 id in 164 aa%2C and to Vibrio cholerae ferritin Vc0078 TR:Q9KVR1 (EMBL:AE004098) (181 aa) fasta scores: E(): 0%2C 69.0%25 id in 168 aa;gbkey=CDS;gene=ftn;inference=similar to sequence:INSDC:AE004098;product=ferritin;protein_id=CAL20424.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2029977	2030429	.	+	.	ID=id4184;Note=Pfam match to entry PF00210 ferritin%2C Ferritins%2Cscore 173.10%2C E-value 1.4e-50;gbkey=misc_feature;gene=ftn;inference=protein motif:PF00210
AL590842.1	EMBL	gene	2030868	2031254	.	+	.	ID=gene1768;Name=YPO1784;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1784
AL590842.1	EMBL	CDS	2030868	2031254	.	+	0	ID=cds1734;Parent=gene1768;Dbxref=GOA:Q0WG07,InterPro:IPR007348,InterPro:IPR014755,InterPro:IPR014756,UniProtKB/TrEMBL:Q0WG07,NCBI_GP:CAL20425.1;Name=CAL20425.1;Note=Similar to Escherichia coli copper resistance protein C precursor PcoC SW:COPC_ECOLI (Q47454) (126 aa) fasta scores: E(): 4.7e-09%2C 36.6%25 id in 123 aa%2C and to Escherichia coli hypothetical 13.4 kDa protein in pphA-holE intergenic region precursor protein YobA SW:YOBA_ECOLI (P76279) (124 aa) fasta scores: E(): 2.8e-21%2C 50.8%25 id in 122 aa;gbkey=CDS;product=putative copper resistance protein;protein_id=CAL20425.1;transl_table=11
AL590842.1	EMBL	gene	2031257	2032141	.	+	.	ID=gene1769;Name=YPO1785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1785
AL590842.1	EMBL	CDS	2031257	2032141	.	+	0	ID=cds1735;Parent=gene1769;Dbxref=GOA:Q7CHW9,InterPro:IPR008457,UniProtKB/TrEMBL:Q7CHW9,NCBI_GP:CAL20426.1;Name=CAL20426.1;Note=Similar to Ralstonia metallidurans copper resistance protein CopD TR:CAC07982 (EMBL: ) (304 aa) fasta scores: E(): 6.7e-16%2C 29.5%25 id in 312 aa%2C and to Pseudomonas syringae copper resistance protein D CopD SW:COPD_PSESM (P12377) (310 aa) fasta scores: E(): 4.2e-14%2C 27.9%25 id in 305 aa%2C and to Escherichia coli from bases 1918174 to 1928865 TR:P76278 (EMBL:AE000278) (290 aa) fasta scores: E(): 0%2C 40.1%25 id in 292 aa;gbkey=CDS;inference=similar to sequence:UniProtKB:CAC07982;product=putative copper resistance protein D;protein_id=CAL20426.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2031284	2031352	.	+	.	ID=id4185;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2031386	2031454	.	+	.	ID=id4186;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2031536	2031589	.	+	.	ID=id4187;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2031608	2031676	.	+	.	ID=id4188;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2031719	2031787	.	+	.	ID=id4189;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2031836	2031904	.	+	.	ID=id4190;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2031947	2032015	.	+	.	ID=id4191;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2032052	2032120	.	+	.	ID=id4192;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2032223	2032579	.	+	.	ID=gene1770;Name=yebY;gbkey=Gene;gene=yebY;gene_biotype=protein_coding;locus_tag=YPO1786
AL590842.1	EMBL	CDS	2032223	2032579	.	+	0	ID=cds1736;Parent=gene1770;Dbxref=InterPro:IPR019648,UniProtKB/TrEMBL:Q7CHX0,NCBI_GP:CAL20427.1;Name=CAL20427.1;Note=Similar to Escherichia coli hypothetical 12.4 kDa protein in pphA-holE intergenic region YebY SW:YEBY_ECOLI (P76277) (113 aa) fasta scores: E(): 4.9e-26%2C 60.7%25 id in 112 aa;gbkey=CDS;gene=yebY;product=putative exported protein;protein_id=CAL20427.1;transl_table=11
AL590842.1	EMBL	gene	2032859	2033089	.	+	.	ID=gene1771;Name=YPO1787;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1787
AL590842.1	EMBL	CDS	2032859	2033089	.	+	0	ID=cds1737;Parent=gene1771;Dbxref=UniProtKB/TrEMBL:Q74UU2,NCBI_GP:CAL20428.1;Name=CAL20428.1;Note=Doubtful CDS. No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20428.1;transl_table=11
AL590842.1	EMBL	gene	2033102	2033428	.	-	.	ID=gene1772;Name=YPO1788;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1788
AL590842.1	EMBL	CDS	2033102	2033428	.	-	0	ID=cds1738;Parent=gene1772;Dbxref=InterPro:IPR010862,UniProtKB/TrEMBL:Q74UU3,NCBI_GP:CAL20429.1;Name=CAL20429.1;Note=Similar to the N-terminal end of Odontella sinensis acyl carrier protein AcpP or Acl1 or Acp SW:ACP_ODOSI (P49517) (80 aa) fasta scores: E(): 5.4%2C 33.9%25 id in 59 aa%2Cand to Neisseria meningitidis acyl carrier protein Nmb1696 TR:Q9JY84 (EMBL:AE002520) (81 aa) fasta scores: E(): 0.6%2C39.2%25 id in 51 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE002520;product=putative acyl carrier protein;protein_id=CAL20429.1;transl_table=11
AL590842.1	EMBL	gene	2033422	2033880	.	-	.	ID=gene1773;Name=YPO1789;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1789
AL590842.1	EMBL	CDS	2033422	2033880	.	-	0	ID=cds1739;Parent=gene1773;Dbxref=UniProtKB/TrEMBL:Q7CHX1,NCBI_GP:CAL20430.1;Name=CAL20430.1;Note=Similar to the C-terminal end of Aeropyrum pernix hypothetical 27.5 kDa protein Ape1196 TR:Q9YCR5 (EMBL:AP000061) (267 aa) fasta scores: E(): 9%2C 27.5%25 id in 131 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP000061;product=putative membrane protein;protein_id=CAL20430.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2033476	2033541	.	-	.	ID=id4193;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2034412	2035572	.	+	.	ID=gene1774;Name=flhB;gbkey=Gene;gene=flhB;gene_biotype=protein_coding;locus_tag=YPO1790
AL590842.1	EMBL	CDS	2034412	2035572	.	+	0	ID=cds1740;Parent=gene1774;Dbxref=GOA:Q7CHX2,InterPro:IPR006135,InterPro:IPR006136,InterPro:IPR029025,UniProtKB/TrEMBL:Q7CHX2,NCBI_GP:CAL20431.1;Name=CAL20431.1;Note=Similar to Salmonella typhimurium flagellar biosynthetic protein FlhB SW:FLHB_SALTY (P40727) (383 aa) fasta scores: E(): 0%2C 65.9%25 id in 381 aa%2C and to Yersinia enterocolitica flagellar biosynthetic protein FlhB SW:FLHB_YEREN (Q56886) (383 aa) fasta scores: E(): 0%2C 91.7%25 id in 386 aa;gbkey=CDS;gene=flhB;inference=protein motif:TMHMM:2.0;product=flagellar biosynthetic protein FlhB;protein_id=CAL20431.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2034427	2035455	.	+	.	ID=id4194;Note=Pfam match to entry PF01312 Bac_export_2%2C FlhB HrpN YscU SpaS Family%2C score 606.50%2C E-value 1.5e-178;gbkey=misc_feature;gene=flhB;inference=protein motif:PF01312
AL590842.1	EMBL	sequence_feature	2034508	2034561	.	+	.	ID=id4195;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=flhB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2034697	2034765	.	+	.	ID=id4196;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=flhB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2034847	2034915	.	+	.	ID=id4197;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=flhB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2034973	2035041	.	+	.	ID=id4198;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=flhB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2035572	2037650	.	+	.	ID=gene1775;Name=flhA;gbkey=Gene;gene=flhA;gene_biotype=protein_coding;locus_tag=YPO1791
AL590842.1	EMBL	CDS	2035572	2037650	.	+	0	ID=cds1741;Parent=gene1775;Dbxref=GOA:Q7CHX3,InterPro:IPR001712,InterPro:IPR006301,InterPro:IPR025505,UniProtKB/TrEMBL:Q7CHX3,NCBI_GP:CAL20432.1;Name=CAL20432.1;Note=Similar to Salmonella typhimurium flagellar biosynthesis protein FlhA SW:FLHA_SALTY (P40729) (692 aa) fasta scores: E(): 0%2C 84.3%25 id in 690 aa%2C and to Yersinia enterocolitica flagellar biosynthesis protein FlhA SW:FLHA_YEREN (Q56887) (692 aa) fasta scores: E(): 0%2C 96.1%25 id in 692 aa;gbkey=CDS;gene=flhA;inference=protein motif:TMHMM:2.0;product=flagellar biosynthesis protein FlhA;protein_id=CAL20432.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2035632	2035685	.	+	.	ID=id4199;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=flhA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2035659	2037620	.	+	.	ID=id4200;Note=Pfam match to entry PF00771 FHIPEP%2C FHIPEP family%2Cscore 1255.00%2C E-value 0;gbkey=misc_feature;gene=flhA;inference=protein motif:PF00771
AL590842.1	EMBL	sequence_feature	2035695	2035763	.	+	.	ID=id4201;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=flhA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2035797	2035865	.	+	.	ID=id4202;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=flhA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2035908	2035976	.	+	.	ID=id4203;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=flhA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2036010	2036081	.	+	.	ID=id4204;Note=PS00994 Bacterial export FHIPEP family signature.;gbkey=misc_feature;gene=flhA;inference=protein motif:ProSite:PS00994
AL590842.1	EMBL	sequence_feature	2036196	2036264	.	+	.	ID=id4205;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=flhA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2036322	2036390	.	+	.	ID=id4206;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=flhA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2036451	2036519	.	+	.	ID=id4207;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=flhA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2037650	2038072	.	+	.	ID=gene1776;Name=flhE;gbkey=Gene;gene=flhE;gene_biotype=protein_coding;locus_tag=YPO1792
AL590842.1	EMBL	CDS	2037650	2038072	.	+	0	ID=cds1742;Parent=gene1776;Dbxref=InterPro:IPR009420,UniProtKB/TrEMBL:Q7CHX4,NCBI_GP:CAL20433.1;Name=CAL20433.1;Note=Similar to Yersinia enterocolitica flagellar protein FlhE precursor SW:FLHE_YEREN (Q56888) (140 aa) fasta scores: E(): 0%2C 73.8%25 id in 141 aa%2C and to Salmonella typhimurium flagellar protein FlhE precursor SW:FLHE_SALTY (P40728) (130 aa) fasta scores: E(): 9.4e-16%2C 44.3%25 id in 131 aa;gbkey=CDS;gene=flhE;product=flagellar protein FlhE precursor;protein_id=CAL20433.1;transl_table=11
AL590842.1	EMBL	pseudogene	2038682	2039587	.	+	.	ID=gene1777;Name=inv;gbkey=Gene;gene=inv;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO1793;part=1/2;pseudo=true
AL590842.1	EMBL	pseudogene	2040296	2042350	.	+	.	ID=gene1777;Name=inv;gbkey=Gene;gene=inv;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO1793;part=2/2;pseudo=true
AL590842.1	EMBL	CDS	2038682	2039587	.	+	0	ID=cds1743;Parent=gene1777;Dbxref=PSEUDO:CAL20434.1;Note=This gene is disrupted by the insertion%2C after codon 302%2C of an IS200-like insertion sequence. The full length CDS is similar to Yersinia pestis invasin Inv TR:Q56937 (EMBL:U22457) (987 aa) fasta scores: E(): 0%2C 99.8%25 id in 986 aa%2C and to Yersinia pseudotuberculosis invasin SW:INVA_YERPS (P11922) (985 aa) fasta scores: E(): 0%2C 99.1%25 id in 986 aa;gbkey=CDS;gene=inv;inference=similar to sequence:INSDC:U22457;product=invasin (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	CDS	2040296	2042350	.	+	0	ID=cds1743;Parent=gene1777;Dbxref=PSEUDO:CAL20434.1;Note=This gene is disrupted by the insertion%2C after codon 302%2C of an IS200-like insertion sequence. The full length CDS is similar to Yersinia pestis invasin Inv TR:Q56937 (EMBL:U22457) (987 aa) fasta scores: E(): 0%2C 99.8%25 id in 986 aa%2C and to Yersinia pseudotuberculosis invasin SW:INVA_YERPS (P11922) (985 aa) fasta scores: E(): 0%2C 99.1%25 id in 986 aa;gbkey=CDS;gene=inv;inference=similar to sequence:INSDC:U22457;product=invasin (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	2038766	2038825	.	+	.	ID=id4208;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=inv;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2040875	2041171	.	+	.	ID=id4209;Note=Pfam match to entry PF02369 Big_1%2C %2C score 134.70%2CE-value 1.6e-36;gbkey=misc_feature;gene=inv;inference=protein motif:PF02369
AL590842.1	EMBL	sequence_feature	2040926	2040949	.	+	.	ID=id4210;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=inv;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	2041181	2041456	.	+	.	ID=id4211;Note=Pfam match to entry PF02369 Big_1%2C %2C score 96.40%2CE-value 5.7e-25;gbkey=misc_feature;gene=inv;inference=protein motif:PF02369
AL590842.1	EMBL	repeat_region	2039585	2040296	.	+	.	ID=id4212;Note=Contains a 'A' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	2039730	2040188	.	+	.	ID=gene1778;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO1794
AL590842.1	EMBL	CDS	2039730	2040188	.	+	0	ID=cds1744;Parent=gene1778;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL20435.1;Name=CAL20435.1;Note=Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL20435.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2039784	2040095	.	+	.	ID=id4213;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	2042540	2042980	.	-	.	ID=gene1779;Name=flgN;gbkey=Gene;gene=flgN;gene_biotype=protein_coding;locus_tag=YPO1796
AL590842.1	EMBL	CDS	2042540	2042980	.	-	0	ID=cds1745;Parent=gene1779;Dbxref=GOA:Q0WFZ7,InterPro:IPR007809,UniProtKB/TrEMBL:Q0WFZ7,NCBI_GP:CAL20436.1;Name=CAL20436.1;Note=Similar to Yersinia enterocolitica flagella synthesis protein FlgN SW:FLGN_YEREN (Q56854) (147 aa) fasta scores: E(): 0%2C 83.6%25 id in 146 aa%2C and to Proteus mirabilis flagella synthesis protein FlgN SW:FLGN_PROMI (P96975) (146 aa) fasta scores: E(): 2.9e-20%2C 43.2%25 id in 146 aa;gbkey=CDS;gene=flgN;product=flagella synthesis protein FlgN;protein_id=CAL20436.1;transl_table=11
AL590842.1	EMBL	gene	2042999	2043301	.	-	.	ID=gene1780;Name=flgM;gbkey=Gene;gene=flgM;gene_biotype=protein_coding;locus_tag=YPO1797
AL590842.1	EMBL	CDS	2042999	2043301	.	-	0	ID=cds1746;Parent=gene1780;Dbxref=GOA:Q7CHX5,InterPro:IPR007412,UniProtKB/TrEMBL:Q7CHX5,NCBI_GP:CAL20437.1;Name=CAL20437.1;Note=Probable anti-sigma-28 factor. Similar to Yersinia enterocolitica negative regulator of flagellin synthesis FlgM SW:FLGM_YEREN (Q57401) (99 aa) fasta scores: E(): 5.7e-28%2C 87.6%25 id in 97 aa%2C and to Salmonella typhimurium negative regulator of flagellin synthesis FlgM or FlgR or MviS SW:FLGM_SALTY (P26477) (97 aa) fasta scores: E(): 1.5e-15%2C 59.2%25 id in 98 aa;gbkey=CDS;gene=flgM;product=negative regulator of flagellin synthesis;protein_id=CAL20437.1;transl_table=11
AL590842.1	EMBL	gene	2043452	2044150	.	-	.	ID=gene1781;Name=flgA;gbkey=Gene;gene=flgA;gene_biotype=protein_coding;locus_tag=YPO1798
AL590842.1	EMBL	CDS	2043452	2044150	.	-	0	ID=cds1747;Parent=gene1781;Dbxref=InterPro:IPR013974,InterPro:IPR017585,UniProtKB/TrEMBL:Q0WFZ5,NCBI_GP:CAL20438.1;Name=CAL20438.1;Note=Similar to Yersinia enterocolitica flagella basal body P-ring formation protein FlgA SW:FLGA_YEREN (Q56892) (224 aa) fasta scores: E(): 0%2C 79.1%25 id in 230 aa%2C and to Salmonella typhimurium flagella basal body P-ring formation protein FlgA SW:FLGA_SALTY (P40131) (219 aa) fasta scores: E(): 5.4e-29%2C 41.5%25 id in 200 aa;gbkey=CDS;gene=flgA;product=flagella basal body P-ring formation protein FlgA;protein_id=CAL20438.1;transl_table=11
AL590842.1	EMBL	gene	2044389	2044802	.	+	.	ID=gene1782;Name=fla FII;gbkey=Gene;gene=fla FII;gene_biotype=protein_coding;gene_synonym=flbA,flgB;locus_tag=YPO1799
AL590842.1	EMBL	CDS	2044389	2044802	.	+	0	ID=cds1748;Parent=gene1782;Dbxref=GOA:Q7CHX6,InterPro:IPR001444,InterPro:IPR006300,InterPro:IPR019776,UniProtKB/TrEMBL:Q7CHX6,NCBI_GP:CAL20439.1;Name=CAL20439.1;Note=Similar to Salmonella typhimurium flagellar basal-body rod protein FlgB FlbA or Fla FII SW:FLGB_SALTY (P16437) (137 aa) fasta scores: E(): 0%2C 74.3%25 id in 136 aa%2Cand to Yersinia enterocolitica flagellar basal-body rod protein FlgB SW:FLGB_YEREN (Q56893) (136 aa) fasta scores: E(): 0%2C 96.3%25 id in 136 aa;gbkey=CDS;gene=fla FII;product=flagellar basal-body rod protein FlgB;protein_id=CAL20439.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2044464	2044505	.	+	.	ID=id4214;Note=Pfam match to entry PF00460 flg_bb_rod%2C Flagella basal body rod proteins%2C score 21.90%2C E-value 0.0007;gbkey=misc_feature;gene=fla FII;inference=protein motif:PF00460
AL590842.1	EMBL	gene	2044808	2045212	.	+	.	ID=gene1783;Name=fla FIII;gbkey=Gene;gene=fla FIII;gene_biotype=protein_coding;gene_synonym=flaW,flgC;locus_tag=YPO1800
AL590842.1	EMBL	CDS	2044808	2045212	.	+	0	ID=cds1749;Parent=gene1783;Dbxref=GOA:Q7CHX7,InterPro:IPR001444,InterPro:IPR006299,InterPro:IPR010930,InterPro:IPR019776,UniProtKB/TrEMBL:Q7CHX7,NCBI_GP:CAL20440.1;Name=CAL20440.1;Note=Similar to Salmonella typhimurium flagellar basal-body rod protein FlgC or FlaW or Fla FIII SW:FLGC_SALTY (P16438) (134 aa) fasta scores: E(): 0%2C 79.9%25 id in 134 aa%2C and to Yersinia enterocolitica flagellar basal-body rod protein FlgC SW:FLGC_YEREN (Q56894) (134 aa) fasta scores: E(): 0%2C 96.3%25 id in 134 aa;gbkey=CDS;gene=fla FIII;product=flagellar basal-body rod protein FlgC;protein_id=CAL20440.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2044826	2044921	.	+	.	ID=id4215;Note=Pfam match to entry PF00460 flg_bb_rod%2C Flagella basal body rod proteins%2C score 46.00%2C E-value 2.5e-10;gbkey=misc_feature;gene=fla FIII;inference=protein motif:PF00460
AL590842.1	EMBL	sequence_feature	2044844	2044906	.	+	.	ID=id4216;Note=PS00588 Flagella basal body rod proteins signature.;gbkey=misc_feature;gene=fla FIII;inference=protein motif:ProSite:PS00588
AL590842.1	EMBL	gene	2045227	2045904	.	+	.	ID=gene1784;Name=Fla FIV;gbkey=Gene;gene=Fla FIV;gene_biotype=protein_coding;gene_synonym=flaV,flgD;locus_tag=YPO1801
AL590842.1	EMBL	CDS	2045227	2045904	.	+	0	ID=cds1750;Parent=gene1784;Dbxref=InterPro:IPR005648,InterPro:IPR025963,InterPro:IPR025965,UniProtKB/TrEMBL:Q7CHX8,NCBI_GP:CAL20441.1;Name=CAL20441.1;Note=Similar to Salmonella typhimurium basal-body rod modification protein FlgD or FlaV or Fla FIV SW:FLGD_SALTY (P16321) (232 aa) fasta scores: E(): 0%2C 70.7%25 id in 215 aa%2Cand to Escherichia coli basal-body rod modification protein FlgD or FlaV or Fla FIV SW:FLGD_ECOLI (P75936) (231 aa) fasta scores: E(): 0%2C 68.1%25 id in 229 aa;gbkey=CDS;gene=Fla FIV;product=basal-body rod modification protein FlgD;protein_id=CAL20441.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2045656	2045679	.	+	.	ID=id4217;Note=PS00687 Aldehyde dehydrogenases glutamic acid active site.;gbkey=misc_feature;gene=Fla FIV;inference=protein motif:ProSite:PS00687
AL590842.1	EMBL	gene	2046106	2047392	.	+	.	ID=gene1785;Name=Fla FV;gbkey=Gene;gene=Fla FV;gene_biotype=protein_coding;gene_synonym=flaK,flgE;locus_tag=YPO1802
AL590842.1	EMBL	CDS	2046106	2047392	.	+	0	ID=cds1751;Parent=gene1785;Dbxref=GOA:Q7CHX9,InterPro:IPR001444,InterPro:IPR010930,InterPro:IPR011491,InterPro:IPR019776,InterPro:IPR020013,UniProtKB/TrEMBL:Q7CHX9,NCBI_GP:CAL20442.1;Name=CAL20442.1;Note=Similar to Salmonella typhimurium flagellar hook protein FlgE or FlaK or Fla FV SW:FLGE_SALTY (P16322) (402 aa) fasta scores: E(): 0%2C 61.7%25 id in 426 aa%2C and to Escherichia coli flagellar hook protein FlgE or FlaK or Fla FV SW:FLGE_ECOLI (P75937) (401 aa) fasta scores: E(): 0%2C61.6%25 id in 427 aa. This CDS contains small internal insertions relative to S.typhimurium and E.coli FlgE;gbkey=CDS;gene=Fla FV;product=flagellar hook protein FlgE;protein_id=CAL20442.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2046112	2046204	.	+	.	ID=id4218;Note=Pfam match to entry PF00460 flg_bb_rod%2C Flagella basal body rod proteins%2C score 49.30%2C E-value 3.2e-11;gbkey=misc_feature;gene=Fla FV;inference=protein motif:PF00460
AL590842.1	EMBL	sequence_feature	2046130	2046192	.	+	.	ID=id4219;Note=PS00588 Flagella basal body rod proteins signature.;gbkey=misc_feature;gene=Fla FV;inference=protein motif:ProSite:PS00588
AL590842.1	EMBL	gene	2047414	2048043	.	+	.	ID=gene1786;Name=fla FVI;gbkey=Gene;gene=fla FVI;gene_biotype=protein_coding;gene_synonym=flaX,flgF;locus_tag=YPO1803
AL590842.1	EMBL	CDS	2047414	2048043	.	+	0	ID=cds1752;Parent=gene1786;Dbxref=GOA:Q7CHY0,InterPro:IPR001444,InterPro:IPR020013,UniProtKB/TrEMBL:Q7CHY0,NCBI_GP:CAL20443.1;Name=CAL20443.1;Note=Similar to Salmonella typhimurium flagellar basal-body rod protein FlgF or FlaX or Fla FVI SW:FLGF_SALTY (P16323) (251 aa) fasta scores: E(): 0%2C 64.5%25 id in 200 aa%2C and to Escherichia coli flagellar basal-body rod protein FlgF or FlaX or Fla FVI SW:FLGF_ECOLI (P75938) (251 aa) fasta scores: E(): 0%2C 64.5%25 id in 200 aa. This CDS is approx. 40 amino acids shorter (at the C-terminal end) than the S. typhimurium and E.coli FlgF;gbkey=CDS;gene=fla FVI;product=flagellar basal-body rod protein FlgF;protein_id=CAL20443.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2047426	2047518	.	+	.	ID=id4220;Note=Pfam match to entry PF00460 flg_bb_rod%2C Flagella basal body rod proteins%2C score 37.90%2C E-value 3.6e-08;gbkey=misc_feature;gene=fla FVI;inference=protein motif:PF00460
AL590842.1	EMBL	sequence_feature	2047444	2047506	.	+	.	ID=id4221;Note=PS00588 Flagella basal body rod proteins signature.;gbkey=misc_feature;gene=fla FVI;inference=protein motif:ProSite:PS00588
AL590842.1	EMBL	gene	2048024	2048722	.	+	.	ID=gene1787;Name=fla FVII;gbkey=Gene;gene=fla FVII;gene_biotype=protein_coding;gene_synonym=flaL,flgG;locus_tag=YPO1804
AL590842.1	EMBL	CDS	2048024	2048722	.	+	0	ID=cds1753;Parent=gene1787;Dbxref=GOA:Q7CHY1,InterPro:IPR010930,InterPro:IPR012834,InterPro:IPR020013,UniProtKB/TrEMBL:Q7CHY1,NCBI_GP:CAL20444.1;Name=CAL20444.1;Note=Similar to Salmonella typhimurium flagellar basal-body rod protein FlgG or FlaL or Fla FVII SW:FLGG_SALTY (P16439) (260 aa) fasta scores: E(): 0%2C 89.2%25 id in 232 aa%2C and to Escherichia coli O157:H7 flagellar biosynthesis%2C cell-distal portion of basal-body rod FlgG TR:AAG55824 (EMBL:AE005318) (260 aa) fasta scores: E(): 0%2C88.8%25 id in 232 aa. This CDS is missing 24 amino acids at the N-terminal end;gbkey=CDS;gene=fla FVII;inference=similar to sequence:INSDC:AE005318;product=flagellar basal-body rod protein FlgG;protein_id=CAL20444.1;transl_table=11
AL590842.1	EMBL	gene	2048866	2049555	.	+	.	ID=gene1788;Name=fla FVIII;gbkey=Gene;gene=fla FVIII;gene_biotype=protein_coding;gene_synonym=flaY,flgH;locus_tag=YPO1805
AL590842.1	EMBL	CDS	2048866	2049555	.	+	0	ID=cds1754;Parent=gene1788;Dbxref=GOA:Q8ZFB2,InterPro:IPR000527,NCBI_GP:CAL20445.1;Name=CAL20445.1;Note=Similar to Salmonella typhimurium flagellar L-ring protein precursor FlgH or FlaY or Fla FVIII SW:FLGH_SALTY (P15929) (232 aa) fasta scores: E(): 0%2C 81.1%25 id in 222 aa%2Cand to Escherichia coli O157:H7 flagellar biosynthesis%2Cbasal-body outer-membrane FlgH TR:AAG55825 (EMBL:AE005318) (232 aa) fasta scores: E(): 0%2C 80.7%25 id in 218 aa;gbkey=CDS;gene=fla FVIII;inference=similar to sequence:INSDC:AE005318;product=flagellar L-ring protein precursor;protein_id=CAL20445.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2048920	2049549	.	+	.	ID=id4222;Note=Pfam match to entry PF02107 FlgH%2C Flagellar L-ring protein%2C score 329.10%2C E-value 1e-102;gbkey=misc_feature;gene=fla FVIII;inference=protein motif:PF02107
AL590842.1	EMBL	gene	2049570	2050679	.	+	.	ID=gene1789;Name=fla FIX;gbkey=Gene;gene=fla FIX;gene_biotype=protein_coding;gene_synonym=flaM,flgI;locus_tag=YPO1806
AL590842.1	EMBL	CDS	2049570	2050679	.	+	0	ID=cds1755;Parent=gene1789;Dbxref=GOA:Q8ZFB1,InterPro:IPR001782,NCBI_GP:CAL20446.1;Name=CAL20446.1;Note=Similar to Salmonella typhimurium flagellar P-ring protein precursor FlgI or FlaM or Fla FIX SW:FLGI_SALTY (P15930) (365 aa) fasta scores: E(): 0%2C 79.3%25 id in 358 aa%2Cand to Escherichia coli flagellar P-ring protein precursor FlgI or FlaM or Fla FIX SW:FLGI_ECOLI (P75941) (365 aa) fasta scores: E(): 0%2C 78.9%25 id in 361 aa. Similar to YPO0730 (47.5%25 identity in 362 aa overlap);gbkey=CDS;gene=fla FIX;product=flagellar P-ring protein precursor;protein_id=CAL20446.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2049642	2050676	.	+	.	ID=id4223;Note=Pfam match to entry PF02119 FlgI%2C Flagellar P-ring protein%2C score 700.00%2C E-value 1.1e-206;gbkey=misc_feature;gene=fla FIX;inference=protein motif:PF02119
AL590842.1	EMBL	gene	2050679	2051623	.	+	.	ID=gene1790;Name=fla FX;gbkey=Gene;gene=fla FX;gene_biotype=protein_coding;gene_synonym=flaZ,flgJ;locus_tag=YPO1807
AL590842.1	EMBL	CDS	2050679	2051623	.	+	0	ID=cds1756;Parent=gene1790;Dbxref=GOA:Q7CHY2,InterPro:IPR002901,InterPro:IPR013377,InterPro:IPR019301,UniProtKB/TrEMBL:Q7CHY2,NCBI_GP:CAL20447.1;Name=CAL20447.1;Note=Similar to Salmonella typhimurium flagellar protein FlgJ or FlaZ or Fla FX SW:FLGJ_SALTY (P15931) (316 aa) fasta scores: E(): 0%2C 60.4%25 id in 316 aa%2C and to Escherichia coli flagellar protein FlgJ or FlaZ or Fla FX SW:FLGJ_ECOLI (P75942) (313 aa) fasta scores: E(): 0%2C 57.4%25 id in 317 aa;gbkey=CDS;gene=fla FX;product=flagellar protein FlgJ;protein_id=CAL20447.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2051120	2051575	.	+	.	ID=id4224;Note=Pfam match to entry PF01832 Amidase_4%2CN-acetylmuramoyl-L-alanine amidase%2C score 186.60%2C E-value 4e-52;gbkey=misc_feature;gene=fla FX;inference=protein motif:PF01832
AL590842.1	EMBL	repeat_region	2051632	2052326	.	+	.	ID=id4225;Note=approx. 5 x 143 bp repeats;gbkey=repeat_region
AL590842.1	EMBL	gene	2052494	2054158	.	+	.	ID=gene1791;Name=flaS;gbkey=Gene;gene=flaS;gene_biotype=protein_coding;gene_synonym=flaW,flgK;locus_tag=YPO1808
AL590842.1	EMBL	CDS	2052494	2054158	.	+	0	ID=cds1757;Parent=gene1791;Dbxref=GOA:Q7CHY3,InterPro:IPR001444,InterPro:IPR002371,InterPro:IPR010930,UniProtKB/TrEMBL:Q7CHY3,NCBI_GP:CAL20448.1;Name=CAL20448.1;Note=Similar to Salmonella typhimurium flagellar hook-associated protein 1 FlgK or FlaS or FlaW SW:FLGK_SALTY (P15932) (552 aa) fasta scores: E(): 0%2C 56.3%25 id in 558 aa%2C and to Escherichia coli flagellar hook-associated protein 1 FlgK or FlaS or FlaW SW:FLGK_ECOLI (P33235) (546 aa) fasta scores: E(): 0%2C 57.8%25 id in 552 aa;gbkey=CDS;gene=flaS;product=flagellar hook-associated protein 1;protein_id=CAL20448.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2052509	2052601	.	+	.	ID=id4226;Note=Pfam match to entry PF00460 flg_bb_rod%2C Flagella basal body rod proteins%2C score 28.70%2C E-value 1.1e-05;gbkey=misc_feature;gene=flaS;inference=protein motif:PF00460
AL590842.1	EMBL	gene	2054297	2055277	.	+	.	ID=gene1792;Name=flaT;gbkey=Gene;gene=flaT;gene_biotype=protein_coding;gene_synonym=flaU,flgL;locus_tag=YPO1809
AL590842.1	EMBL	CDS	2054297	2055277	.	+	0	ID=cds1758;Parent=gene1792;Dbxref=GOA:Q0WFY4,InterPro:IPR001029,InterPro:IPR013384,UniProtKB/TrEMBL:Q0WFY4,NCBI_GP:CAL20449.1;Name=CAL20449.1;Note=Similar to Salmonella typhimurium flagellar hook-associated protein 3 FlgL or FlaT or FlaU SW:FLGL_SALTY (P16326) (317 aa) fasta scores: E(): 0%2C 60.0%25 id in 325 aa%2C and to Escherichia coli flagellar hook-associated protein 3 FlgL or FlaT or FlaU SW:FLGL_ECOLI (P29744) (317 aa) fasta scores: E(): 0%2C 60.9%25 id in 325 aa;gbkey=CDS;gene=flaT;product=flagellar hook-associated protein 3;protein_id=CAL20449.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2054375	2054800	.	+	.	ID=id4227;Note=Pfam match to entry PF00669 Flagellin_N%2C Bacterial flagellin N-terminus%2C score 98.50%2C E-value 1.3e-25;gbkey=misc_feature;gene=flaT;inference=protein motif:PF00669
AL590842.1	EMBL	gene	2055306	2056283	.	-	.	ID=gene1793;Name=YPO1810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1810
AL590842.1	EMBL	CDS	2055306	2056283	.	-	0	ID=cds1759;Parent=gene1793;Dbxref=GOA:Q0WFY3,InterPro:IPR007324,InterPro:IPR011991,InterPro:IPR013249,InterPro:IPR013324,UniProtKB/TrEMBL:Q0WFY3,NCBI_GP:CAL20450.1;Name=CAL20450.1;Note=Similar to Bacillus subtilis deoxyribonucleoside regulator DeoR SW:DEOR_BACSU (P39140) (313 aa) fasta scores: E(): 9.1e-17%2C 26.9%25 id in 305 aa%2C and to Bacillus halodurans transcriptional regulator BH0780 TR:Q9KER9 (EMBL:AP001509) (316 aa) fasta scores: E(): 3.9e-26%2C 32.2%25 id in 304 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001509;product=putative transcriptional regulatory protein;protein_id=CAL20450.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2056014	2056064	.	-	.	ID=id4228;Note=PS00237 G-protein coupled receptors signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00237
AL590842.1	EMBL	sequence_feature	2056128	2056193	.	-	.	ID=id4229;Note=Predicted helix-turn-helix motif with score 2191 (+6.65 SD) at aa 39-60%2C sequence LKQSDIAEILGVSRATVINYLN;gbkey=misc_feature
AL590842.1	EMBL	gene	2056525	2058591	.	+	.	ID=gene1794;Name=YPO1811;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1811
AL590842.1	EMBL	CDS	2056525	2058591	.	+	0	ID=cds1760;Parent=gene1794;Dbxref=GOA:Q7CHY4,InterPro:IPR001303,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:Q7CHY4,NCBI_GP:CAL20451.1;Name=CAL20451.1;Note=Similar to Bacillus halodurans hypothetical protein Bh1550 TR:Q9KCM1 (EMBL:AP001512) (689 aa) fasta scores: E(): 0%2C 33.9%25 id in 676 aa%2C and to Bacillus subtilis hypothetical oxidoreductase in gbsA-tlpB intergenic region YuxG or YulA SW:YUXG_BACSU (P40747) (689 aa) fasta scores: E(): 0%2C 32.3%25 id in 706 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001512;product=putative oxidoreductase;protein_id=CAL20451.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2057842	2058390	.	+	.	ID=id4230;Note=Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase%2C score 151.00%2C E-value 2.1e-41;gbkey=misc_feature;inference=protein motif:PF00106
AL590842.1	EMBL	sequence_feature	2058241	2058327	.	+	.	ID=id4231;Note=PS00061 Short-chain dehydrogenases/reductases family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00061
AL590842.1	EMBL	sequence_feature	2058289	2058336	.	+	.	ID=id4232;Note=PS00038 Myc-type%2C 'helix-loop-helix' dimerization domain signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00038
AL590842.1	EMBL	gene	2058739	2059800	.	+	.	ID=gene1795;Name=YPO1812;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1812
AL590842.1	EMBL	CDS	2058739	2059800	.	+	0	ID=cds1761;Parent=gene1795;Dbxref=GOA:Q0WFY1,InterPro:IPR001851,UniProtKB/TrEMBL:Q0WFY1,NCBI_GP:CAL20452.1;Name=CAL20452.1;Note=Similar to Bacillus subtilis ribose transport system permease protein RbsC SW:RBSC_BACSU (P36948) (323 aa) fasta scores: E(): 1.9e-21%2C 31.6%25 id in 335 aa%2C and to Escherichia coli O157:H7 putative permease component of transport system%2C probably ribose specific Z0419 TR:AAG54673 (EMBL:AE005211) (318 aa) fasta scores: E(): 8.3e-29%2C 36.8%25 id in 315 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE005211;product=putative sugar transport system permease protein;protein_id=CAL20452.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2058805	2058873	.	+	.	ID=id4233;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2058901	2058969	.	+	.	ID=id4234;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2058988	2059044	.	+	.	ID=id4235;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2059072	2059140	.	+	.	ID=id4236;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2059165	2059233	.	+	.	ID=id4237;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2059276	2059344	.	+	.	ID=id4238;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2059432	2059491	.	+	.	ID=id4239;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2059519	2059572	.	+	.	ID=id4240;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2059591	2059659	.	+	.	ID=id4241;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2059687	2059740	.	+	.	ID=id4242;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2059843	2060838	.	+	.	ID=gene1796;Name=YPO1813;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1813
AL590842.1	EMBL	CDS	2059843	2060838	.	+	0	ID=cds1762;Parent=gene1796;Dbxref=InterPro:IPR025997,InterPro:IPR028082,UniProtKB/TrEMBL:Q7CHY5,NCBI_GP:CAL20453.1;Name=CAL20453.1;Note=Similar to Escherichia coli D-allose-binding periplasmic protein precursor AlsB SW:ALSB_ECOLI (P39265) (311 aa) fasta scores: E(): 2.8e-10%2C 25.8%25 id in 283 aa%2Cand to Streptomyces coelicolor possible secreted solute-binding lipoprotein Scf51a.27 TR:Q9RL38 (EMBL:AL121596) (359 aa) fasta scores: E(): 2.3e-13%2C 24.8%25 id in 303 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL121596;product=putative sugar-binding periplasmic protein;protein_id=CAL20453.1;transl_table=11
AL590842.1	EMBL	gene	2060904	2062481	.	+	.	ID=gene1797;Name=YPO1814;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1814
AL590842.1	EMBL	CDS	2060904	2062481	.	+	0	ID=cds1763;Parent=gene1797;Dbxref=GOA:Q0WFX9,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WFX9,NCBI_GP:CAL20454.1;Name=CAL20454.1;Note=Similar to Escherichia coli ribose transport ATP-binding protein RbsA SW:RBSA_ECOLI (P04983) (501 aa) fasta scores: E(): 0%2C 34.5%25 id in 499 aa%2C and to Bacillus halodurans sugar ABC transporter bh2322 TR:Q9KAG5 (EMBL:AP001515) (522 aa) fasta scores: E(): 0%2C 33.1%25 id in 513 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001515;product=putative sugar ABC transporter%2C ATP-binding protein;protein_id=CAL20454.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2061039	2061623	.	+	.	ID=id4243;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 143.40%2C E-value 4.1e-39;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2061060	2061083	.	+	.	ID=id4244;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	2061807	2062388	.	+	.	ID=id4245;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 55.90%2C E-value 8.6e-13;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2062161	2062205	.	+	.	ID=id4246;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	2062577	2063506	.	+	.	ID=gene1798;Name=YPO1815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1815
AL590842.1	EMBL	CDS	2062577	2063506	.	+	0	ID=cds1764;Parent=gene1798;Dbxref=GOA:Q0WFX8,InterPro:IPR001851,UniProtKB/TrEMBL:Q0WFX8,NCBI_GP:CAL20455.1;Name=CAL20455.1;Note=Similar to Escherichia coli galactoside transport system permease protein MglC SW:MGLC_ECOLI (P23200) (336 aa) fasta scores: E(): 1.5e-18%2C 30.4%25 id in 319 aa%2C and to Escherichia coli O157:H7 putative permease component of transport system%2C probably ribose specific Z0418 TR:AAG54672 (EMBL:AE005211) (323 aa) fasta scores: E(): 0%2C38.9%25 id in 311 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE005211;product=putative sugar ABC transporter%2C permease;protein_id=CAL20455.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2062577	2062630	.	+	.	ID=id4247;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2062667	2062771	.	+	.	ID=id4248;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2062814	2062882	.	+	.	ID=id4249;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2062919	2062978	.	+	.	ID=id4250;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2063036	2063104	.	+	.	ID=id4251;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2063186	2063254	.	+	.	ID=id4252;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2063282	2063338	.	+	.	ID=id4253;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2063357	2063425	.	+	.	ID=id4254;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2063435	2063491	.	+	.	ID=id4255;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2063555	2064514	.	+	.	ID=gene1799;Name=YPO1816;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1816
AL590842.1	EMBL	CDS	2063555	2064514	.	+	0	ID=cds1765;Parent=gene1799;Dbxref=GOA:Q74UW7,InterPro:IPR011611,InterPro:IPR029056,UniProtKB/TrEMBL:Q74UW7,NCBI_GP:CAL20456.1;Name=CAL20456.1;Note=Similar to Escherichia coli hypothetical sugar kinase in ansA-gapA intergenic region YdjH SW:YDJH_ECOLI (P77493) (315 aa) fasta scores: E(): 7.3e-18%2C 25.3%25 id in 296 aa%2C and to Aeropyrum pernix 310aa long hypothetical sugar kinase Ape0012 TR:Q9YG89 (EMBL:AP000058) (310 aa) fasta scores: E(): 6.4e-16%2C 29.1%25 id in 299 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP000058;product=putative sugar kinase;protein_id=CAL20456.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2063669	2064340	.	+	.	ID=id4256;Note=Pfam match to entry PF00294 pfkB%2C pfkB family carbohydrate kinase%2C score 138.90%2C E-value 9.1e-38;gbkey=misc_feature;inference=protein motif:PF00294
AL590842.1	EMBL	gene	2064772	2065191	.	-	.	ID=gene1800;Name=YPO1817;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1817
AL590842.1	EMBL	CDS	2064772	2065191	.	-	0	ID=cds1766;Parent=gene1800;Dbxref=GOA:Q7CHY6,InterPro:IPR005357,InterPro:IPR013321,UniProtKB/TrEMBL:Q7CHY6,NCBI_GP:CAL20457.1;Name=CAL20457.1;Note=Similar to Escherichia coli YcfB protein TR:BAB12617 (EMBL:AP002527) (145 aa) fasta scores: E(): 8.8e-09%2C 36.8%25 id in 114 aa%2C and to Bacteriophage HP1 hypothetical protein SW:YO14_BPHP1 (P51716) (133 aa) fasta scores: E(): 5e-11%2C33.8%25 id in 133 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP002527;product=conserved hypothetical protein;protein_id=CAL20457.1;transl_table=11
AL590842.1	EMBL	gene	2065236	2065604	.	-	.	ID=gene1801;Name=YPO1818;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1818
AL590842.1	EMBL	CDS	2065236	2065604	.	-	0	ID=cds1767;Parent=gene1801;Dbxref=GOA:Q7CHY7,InterPro:IPR012933,InterPro:IPR015146,UniProtKB/TrEMBL:Q7CHY7,NCBI_GP:CAL20458.1;Name=CAL20458.1;Note=Similar to Synechocystis sp. hypothetical protein SLR1999 TR:P73830 (EMBL:D90910) (136 aa) fasta scores: E(): 4e-06%2C 42.4%25 id in 59 aa%2C and to Escherichia coli YcfA protein TR:BAB12616 (EMBL:AP002527) (60 aa) fasta scores: E(): 0.0025%2C 43.3%25 id in 60 aa;gbkey=CDS;inference=similar to sequence:INSDC:D90910;product=conserved hypothetical protein;protein_id=CAL20458.1;transl_table=11
AL590842.1	EMBL	gene	2065625	2066407	.	-	.	ID=gene1802;Name=fliR;gbkey=Gene;gene=fliR;gene_biotype=protein_coding;gene_synonym=mopE;locus_tag=YPO1819
AL590842.1	EMBL	CDS	2065625	2066407	.	-	0	ID=cds1768;Parent=gene1802;Dbxref=GOA:Q7CHY8,InterPro:IPR002010,InterPro:IPR006303,UniProtKB/TrEMBL:Q7CHY8,NCBI_GP:CAL20459.1;Name=CAL20459.1;Note=Similar to Erwinia carotovora flagellar biosynthetic protein FliR or MopE SW:FLIR_ERWCA (P34202) (261 aa) fasta scores: E(): 0%2C 65.4%25 id in 260 aa%2C and to Escherichia coli flagellar biosynthetic protein FliR SW:FLIR_ECOLI (P33135) (261 aa) fasta scores: E(): 0%2C 67.6%25 id in 256 aa;gbkey=CDS;gene=fliR;inference=protein motif:TMHMM:2.0;product=flagellar biosynthetic protein FliR;protein_id=CAL20459.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2065652	2066389	.	-	.	ID=id4257;Note=Pfam match to entry PF01311 Bac_export_1%2C Bacterial export proteins%2C family 1%2C score 277.60%2C E-value 1.6e-79;gbkey=misc_feature;gene=fliR;inference=protein motif:PF01311
AL590842.1	EMBL	sequence_feature	2065703	2065768	.	-	.	ID=id4258;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=fliR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2065805	2065870	.	-	.	ID=id4259;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=fliR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2065955	2066020	.	-	.	ID=id4260;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=fliR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2066123	2066188	.	-	.	ID=id4261;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=fliR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2066204	2066269	.	-	.	ID=id4262;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=fliR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2066309	2066374	.	-	.	ID=id4263;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=fliR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2066410	2066679	.	-	.	ID=gene1803;Name=fliQ;gbkey=Gene;gene=fliQ;gene_biotype=protein_coding;gene_synonym=mopD;locus_tag=YPO1820a
AL590842.1	EMBL	CDS	2066410	2066679	.	-	0	ID=cds1769;Parent=gene1803;Dbxref=GOA:Q7CHY9,InterPro:IPR002191,InterPro:IPR006305,UniProtKB/TrEMBL:Q7CHY9,NCBI_GP:CAL20460.1;Name=CAL20460.1;Note=Similar to Escherichia coli flagellar biosynthetic protein FliQ SW:FLIQ_ECOLI (P33134) (89 aa) fasta scores: E(): 2.7e-25%2C 78.7%25 id in 89 aa%2C and to Erwinia carotovora flagellar biosynthetic protein FliQ or MopD SW:FLIQ_ERWCA (P34201) (89 aa) fasta scores: E(): 2.7e-25%2C 82.0%25 id in 89 aa;gbkey=CDS;gene=fliQ;product=flagellar biosynthetic protein FliQ;protein_id=CAL20460.1;transl_table=11
AL590842.1	EMBL	gene	2066785	2067525	.	-	.	ID=gene1804;Name=fliP;gbkey=Gene;gene=fliP;gene_biotype=protein_coding;gene_synonym=mopC;locus_tag=YPO1820
AL590842.1	EMBL	CDS	2066785	2067525	.	-	0	ID=cds1770;Parent=gene1804;Dbxref=GOA:Q0WFX2,InterPro:IPR005837,InterPro:IPR005838,UniProtKB/TrEMBL:Q0WFX2,NCBI_GP:CAL20461.1;Name=CAL20461.1;Note=Similar to Escherichia coli flagellar biosynthetic protein FliP SW:FLIP_ECOLI (P33133) (245 aa) fasta scores: E(): 0%2C 82.2%25 id in 236 aa%2C and to Erwinia carotovora flagellar biosynthetic protein FliP or MopC SW:FLIP_ERWCA (P34200) (258 aa) fasta scores: E(): 0%2C 80.7%25 id in 238 aa;gbkey=CDS;gene=fliP;inference=protein motif:TMHMM:2.0;product=flagellar biosynthetic protein FliP;protein_id=CAL20461.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2066803	2067384	.	-	.	ID=id4264;Note=Pfam match to entry PF00813 FliP%2C FliP family%2C score 410.40%2C E-value 1.7e-119;gbkey=misc_feature;gene=fliP;inference=protein motif:PF00813
AL590842.1	EMBL	sequence_feature	2066815	2066880	.	-	.	ID=id4265;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=fliP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2066827	2066865	.	-	.	ID=id4266;Note=PS01061 Flagella transport protein fliP family signature 2.;gbkey=misc_feature;gene=fliP;inference=protein motif:ProSite:PS01061
AL590842.1	EMBL	sequence_feature	2066902	2066967	.	-	.	ID=id4267;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=fliP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2066962	2067009	.	-	.	ID=id4268;Note=PS01060 Flagella transport protein fliP family signature 1.;gbkey=misc_feature;gene=fliP;inference=protein motif:ProSite:PS01060
AL590842.1	EMBL	sequence_feature	2067208	2067273	.	-	.	ID=id4269;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=fliP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2067313	2067378	.	-	.	ID=id4270;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=fliP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2067439	2067504	.	-	.	ID=id4271;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=fliP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2067606	2067974	.	-	.	ID=gene1805;Name=fliO;gbkey=Gene;gene=fliO;gene_biotype=protein_coding;gene_synonym=mopB;locus_tag=YPO1821
AL590842.1	EMBL	CDS	2067606	2067974	.	-	0	ID=cds1771;Parent=gene1805;Dbxref=GOA:Q0WFX1,InterPro:IPR022781,UniProtKB/TrEMBL:Q0WFX1,NCBI_GP:CAL20462.1;Name=CAL20462.1;Note=Similar to Escherichia coli flagellar protein FliO SW:FLIO_ECOLI (P22586) (101 aa) fasta scores: E(): 3.5e-10%2C50.6%25 id in 87 aa%2C and to Erwinia carotovora MopB protein SW:MOPB_ERWCA (P34199) (140 aa) fasta scores: E(): 7.2e-26%2C65.0%25 id in 117 aa;gbkey=CDS;gene=fliO;product=flagellar protein FliO;protein_id=CAL20462.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2067891	2067956	.	-	.	ID=id4272;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=fliO;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2068142	2068558	.	-	.	ID=gene1806;Name=flaN;gbkey=Gene;gene=flaN;gene_biotype=protein_coding;gene_synonym=fliN,motD;locus_tag=YPO1822
AL590842.1	EMBL	CDS	2068142	2068558	.	-	0	ID=cds1772;Parent=gene1806;Dbxref=GOA:Q7CHZ0,InterPro:IPR001172,InterPro:IPR001543,InterPro:IPR012826,UniProtKB/TrEMBL:Q7CHZ0,NCBI_GP:CAL20463.1;Name=CAL20463.1;Note=Similar to Escherichia coli flagellar motor switch protein FliN SW:FLIN_ECOLI (P15070) (137 aa) fasta scores: E(): 0%2C 72.5%25 id in 138 aa%2C and to Salmonella typhimurium flagellar motor switch protein FliN or MotD or FlaN SW:FLIN_SALTY (P26419) (137 aa) fasta scores: E(): 0%2C 73.2%25 id in 138 aa;gbkey=CDS;gene=flaN;product=flagellar motor switch protein FliN;protein_id=CAL20463.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2068169	2068399	.	-	.	ID=id4273;Note=Pfam match to entry PF01052 SpoA%2C Surface presentation of antigens (SPOA) protein%2C score 129.80%2CE-value 5e-35;gbkey=misc_feature;gene=flaN;inference=protein motif:PF01052
AL590842.1	EMBL	gene	2068555	2069556	.	-	.	ID=gene1807;Name=CheC2;gbkey=Gene;gene=CheC2;gene_biotype=protein_coding;gene_synonym=fla AII,fla QII,fliM;locus_tag=YPO1823
AL590842.1	EMBL	CDS	2068555	2069556	.	-	0	ID=cds1773;Parent=gene1807;Dbxref=GOA:Q7CHZ1,InterPro:IPR001543,InterPro:IPR001689,InterPro:IPR028976,UniProtKB/TrEMBL:Q7CHZ1,NCBI_GP:CAL20464.1;Name=CAL20464.1;Note=Similar to Escherichia coli flagellar motor switch protein fliM SW:FLIM_ECOLI (P06974) (334 aa) fasta scores: E(): 0%2C 83.2%25 id in 334 aa%2C and to Salmonella typhimurium flagellar motor switch protein FliM or Fla AII or Fla QII or CheC2 SW:FLIM_SALTY (P26418) (334 aa) fasta scores: E(): 0%2C 84.1%25 id in 334 aa;gbkey=CDS;gene=CheC2;product=flagellar motor switch protein FliM;protein_id=CAL20464.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2068867	2069448	.	-	.	ID=id4274;Note=Pfam match to entry PF02154 FliM%2C Flagellar motor switch protein FliM%2C score 376.40%2C E-value 2.8e-109;gbkey=misc_feature;gene=CheC2;inference=protein motif:PF02154
AL590842.1	EMBL	gene	2069562	2070032	.	-	.	ID=gene1808;Name=cheC1;gbkey=Gene;gene=cheC1;gene_biotype=protein_coding;gene_synonym=fla AI,fla QI,fliL;locus_tag=YPO1824
AL590842.1	EMBL	CDS	2069562	2070032	.	-	0	ID=cds1774;Parent=gene1808;Dbxref=GOA:Q74UX4,InterPro:IPR005503,UniProtKB/TrEMBL:Q74UX4,NCBI_GP:CAL20465.1;Name=CAL20465.1;Note=Similar to Escherichia coli flagellar FliL protein SW:FLIL_ECOLI (P06973) (154 aa) fasta scores: E(): 2e-28%2C53.2%25 id in 158 aa%2C and to Salmonella typhimurium flagellar FliL protein or Fla AI or Fla QI or Chec1 SW:FLIL_SALTY (P26417) (155 aa) fasta scores: E(): 2.6e-30%2C 56.0%25 id in 159 aa. This CDS contains 4 amino acids insertion after aa 64 relative to E.coli and S. typhimurium FliLs;gbkey=CDS;gene=cheC1;inference=protein motif:TMHMM:2.0;product=flagellar protein FliL;protein_id=CAL20465.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2069838	2069894	.	-	.	ID=id4275;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=cheC1;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2069925	2069990	.	-	.	ID=id4276;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=cheC1;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2070299	2071651	.	-	.	ID=gene1809;Name=fliK;gbkey=Gene;gene=fliK;gene_biotype=protein_coding;locus_tag=YPO1825
AL590842.1	EMBL	CDS	2070299	2071651	.	-	0	ID=cds1775;Parent=gene1809;Dbxref=GOA:Q7CHZ2,InterPro:IPR001635,InterPro:IPR021136,UniProtKB/TrEMBL:Q7CHZ2,NCBI_GP:CAL20466.1;Name=CAL20466.1;Note=Similar to Escherichia coli flagellar hook-length control protein FliK SW:FLIK_ECOLI (P52614) (375 aa) fasta scores: E(): 1.8e-25%2C 36.8%25 id in 410 aa%2C and to Salmonella typhimurium flagellar hook-length control protein SW:FLIK_SALTY (P26416) (405 aa) fasta scores: E(): 6.5e-27%2C38.7%25 id in 406 aa. Identity level is higher at the C-terminal region;gbkey=CDS;gene=fliK;product=flagellar hook-length control protein FliK;protein_id=CAL20466.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2070302	2070832	.	-	.	ID=id4277;Note=Pfam match to entry PF02120 Flg_hook%2C Flagellar hook-length control protein%2C score 185.30%2C E-value 9.7e-52;gbkey=misc_feature;gene=fliK;inference=protein motif:PF02120
AL590842.1	EMBL	sequence_feature	2070974	2070997	.	-	.	ID=id4278;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=fliK;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2071648	2072094	.	-	.	ID=gene1810;Name=flaO;gbkey=Gene;gene=flaO;gene_biotype=protein_coding;gene_synonym=flaS,fliJ;locus_tag=YPO1826
AL590842.1	EMBL	CDS	2071648	2072094	.	-	0	ID=cds1776;Parent=gene1810;Dbxref=GOA:Q7CHZ3,InterPro:IPR012823,InterPro:IPR018006,UniProtKB/TrEMBL:Q7CHZ3,NCBI_GP:CAL20467.1;Name=CAL20467.1;Note=Similar to Escherichia coli flagellar protein FliJ SW:FLIJ_ECOLI (P52613) (147 aa) fasta scores: E(): 2.7e-26%2C56.9%25 id in 144 aa%2C and to Salmonella typhimurium flagellar protein FliJ or FlaO or FlaS SW:FLIJ_SALTY (P26463) (147 aa) fasta scores: E(): 3.6e-26%2C 56.3%25 id in 144 aa;gbkey=CDS;gene=flaO;product=flagellar protein FliJ;protein_id=CAL20467.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2071654	2072094	.	-	.	ID=id4279;Note=Pfam match to entry PF02050 FliJ%2C Flagellar FliJ protein%2C score 191.40%2C E-value 1.4e-53;gbkey=misc_feature;gene=flaO;inference=protein motif:PF02050
AL590842.1	EMBL	gene	2072194	2073648	.	-	.	ID=gene1811;Name=fla AIII;gbkey=Gene;gene=fla AIII;gene_biotype=protein_coding;gene_synonym=flaC,fliI;locus_tag=YPO1827
AL590842.1	EMBL	CDS	2072194	2073648	.	-	0	ID=cds1777;Parent=gene1811;Dbxref=GOA:Q0WFW5,InterPro:IPR000194,InterPro:IPR003593,InterPro:IPR005714,InterPro:IPR020003,InterPro:IPR020005,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WFW5,NCBI_GP:CAL20468.1;Name=CAL20468.1;Note=Similar to Salmonella typhimurium flagellum-specific ATP synthase FliI or Fla AIII or FlaC SW:FLII_SALTY (P26465) (456 aa) fasta scores: E(): 0%2C 80.3%25 id in 468 aa%2Cand to Escherichia coli flagellum-specific ATP synthase FliI or Fla AIII or FlaC SW:FLII_ECOLI (P52612) (457 aa) fasta scores: E(): 0%2C 80.3%25 id in 468 aa. Similar to YPO0717 (52.1%25 identity in 445 aa overlap);gbkey=CDS;gene=fla AIII;product=flagellum-specific ATP synthase;protein_id=CAL20468.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2072440	2073513	.	-	.	ID=id4280;Note=Pfam match to entry PF00006 ATP-synt_ab%2C ATP synthase alpha/beta family%2C score 323.40%2C E-value 2.6e-93;gbkey=misc_feature;gene=fla AIII;inference=protein motif:PF00006
AL590842.1	EMBL	sequence_feature	2072443	2072472	.	-	.	ID=id4281;Note=PS00152 ATP synthase alpha and beta subunits signature.;gbkey=misc_feature;gene=fla AIII;inference=protein motif:ProSite:PS00152
AL590842.1	EMBL	sequence_feature	2072995	2073018	.	-	.	ID=id4282;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=fla AIII;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2073611	2074327	.	-	.	ID=gene1812;Name=fla AII.3;gbkey=Gene;gene=fla AII.3;gene_biotype=protein_coding;gene_synonym=fla BIII,fliH;locus_tag=YPO1828
AL590842.1	EMBL	CDS	2073611	2074327	.	-	0	ID=cds1778;Parent=gene1812;Dbxref=GOA:Q0WFW4,InterPro:IPR000563,InterPro:IPR018035,UniProtKB/TrEMBL:Q0WFW4,NCBI_GP:CAL20469.1;Name=CAL20469.1;Note=Similar to Salmonella typhimurium flagellar assembly protein FliH or Fla BIII or Fla AII.3 SW:FLIH_SALTY (P15934) (235 aa) fasta scores: E(): 0%2C 55.8%25 id in 233 aa%2Cand to Escherichia coli flagellar assembly protein FliH or Fla BIII or Fla AII.3 SW:FLIH_ECOLI (P31068) (228 aa) fasta scores: E(): 0%2C 55.5%25 id in 236 aa;gbkey=CDS;gene=fla AII.3;product=flagellar assembly protein FliH;protein_id=CAL20469.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2073638	2074174	.	-	.	ID=id4283;Note=Pfam match to entry PF02108 FliH%2C Flagellar assembly protein FliH%2C score 218.50%2C E-value 9.6e-62;gbkey=misc_feature;gene=fla AII.3;inference=protein motif:PF02108
AL590842.1	EMBL	gene	2074320	2075312	.	-	.	ID=gene1813;Name=fla AII.2;gbkey=Gene;gene=fla AII.2;gene_biotype=protein_coding;gene_synonym=fla BII,fliG;locus_tag=YPO1829
AL590842.1	EMBL	CDS	2074320	2075312	.	-	0	ID=cds1779;Parent=gene1813;Dbxref=GOA:Q7CHZ4,InterPro:IPR000090,InterPro:IPR011002,InterPro:IPR028263,UniProtKB/TrEMBL:Q7CHZ4,NCBI_GP:CAL20470.1;Name=CAL20470.1;Note=Similar to Escherichia coli flagellar motor switch protein FliG or Fla BII or Fla AII.2 SW:FLIG_ECOLI (P31067) (331 aa) fasta scores: E(): 0%2C 83.6%25 id in 329 aa%2C and to Salmonella typhimurium flagellar motor switch protein FliG or Fla BII or Fla AII.2 SW:FLIG_SALTY (P15933) (331 aa) fasta scores: E(): 0%2C 83.3%25 id in 329 aa;gbkey=CDS;gene=fla AII.2;product=flagellar motor switch protein FliG;protein_id=CAL20470.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2074344	2074673	.	-	.	ID=id4284;Note=Pfam match to entry PF01706 FliG-C%2C FliG C-terminal domain%2C score 192.50%2C E-value 6.9e-54;gbkey=misc_feature;gene=fla AII.2;inference=protein motif:PF01706
AL590842.1	EMBL	gene	2075309	2077021	.	-	.	ID=gene1814;Name=fla AII.1;gbkey=Gene;gene=fla AII.1;gene_biotype=protein_coding;gene_synonym=fla BI,fliF;locus_tag=YPO1830
AL590842.1	EMBL	CDS	2075309	2077021	.	-	0	ID=cds1780;Parent=gene1814;Dbxref=GOA:Q7CHZ5,InterPro:IPR000067,InterPro:IPR006182,InterPro:IPR013556,UniProtKB/TrEMBL:Q7CHZ5,NCBI_GP:CAL20471.1;Name=CAL20471.1;Note=Similar to Salmonella typhimurium flagellar M-ring protein FliF or Fla BI or Fla AII.1 SW:FLIF_SALTY (P15928) (559 aa) fasta scores: E(): 0%2C 64.3%25 id in 552 aa%2C and to Escherichia coli flagellar M-ring protein FliF or Fla BI or Fla AII.1 SW:FLIF_ECOLI (P25798) (552 aa) fasta scores: E(): 0%2C 63.8%25 id in 552 aa;gbkey=CDS;gene=fla AII.1;product=flagellar M-ring protein;protein_id=CAL20471.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2076332	2076958	.	-	.	ID=id4285;Note=Pfam match to entry PF01514 YscJ_FliF%2C Secretory protein of YscJ/FliF family%2C score 296.40%2C E-value 3.6e-85;gbkey=misc_feature;gene=fla AII.1;inference=protein motif:PF01514
AL590842.1	EMBL	sequence_feature	2076881	2076937	.	-	.	ID=id4286;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=fla AII.1;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2077374	2077685	.	+	.	ID=gene1815;Name=fla AI;gbkey=Gene;gene=fla AI;gene_biotype=protein_coding;gene_synonym=flaN,fliE;locus_tag=YPO1831
AL590842.1	EMBL	CDS	2077374	2077685	.	+	0	ID=cds1781;Parent=gene1815;Dbxref=GOA:Q8ZF85,InterPro:IPR001624,NCBI_GP:CAL20472.1;Name=CAL20472.1;Note=Similar to Escherichia coli flagellar hook-basal body complex protein FliE or FlaN or Fla AI SW:FLIE_ECOLI (P25797) (103 aa) fasta scores: E(): 3.1e-19%2C 59.2%25 id in 103 aa%2C and to Salmonella typhimurium flagellar hook-basal body complex protein FliE or FlaN or Fla AI SW:FLIE_SALTY (P26462) (103 aa) fasta scores: E(): 3.6e-19%2C 56.9%25 id in 102 aa;gbkey=CDS;gene=fla AI;product=flagellar hook-basal body complex protein FliE;protein_id=CAL20472.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2077428	2077682	.	+	.	ID=id4287;Note=Pfam match to entry PF02049 FliE%2C Flagellar hook-basal body complex protein FliE%2C score 101.40%2C E-value 1.8e-26;gbkey=misc_feature;gene=fla AI;inference=protein motif:PF02049
AL590842.1	EMBL	gene	2077947	2078252	.	+	.	ID=gene1816;Name=YPO1832;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1832
AL590842.1	EMBL	CDS	2077947	2078252	.	+	0	ID=cds1782;Parent=gene1816;Dbxref=UniProtKB/TrEMBL:Q74UY1,NCBI_GP:CAL20473.1;Name=CAL20473.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20473.1;transl_table=11
AL590842.1	EMBL	gene	2078263	2078739	.	+	.	ID=gene1817;Name=YPO1833;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1833
AL590842.1	EMBL	CDS	2078263	2078739	.	+	0	ID=cds1783;Parent=gene1817;Dbxref=InterPro:IPR003812,InterPro:IPR006440,UniProtKB/TrEMBL:Q7CHZ6,NCBI_GP:CAL20474.1;Name=CAL20474.1;Note=C-terminus similar to Pseudomonas aeruginosa hypothetical protein PA0053 TR:AAG03443 (Q9I779) (84 aa) fasta scores: E(): 1e-10%2C 47.9%25 id in 71 aa. Full length CDS has some similarity to Vibrio cholerae Doc protein VCA0475 TR:Q9KMA2 (EMBL:AE004379) (133 aa) fasta scores: E(): 0.003%2C 26.1%25 id in 115 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004379;product=conserved hypothetical protein;protein_id=CAL20474.1;transl_table=11
AL590842.1	EMBL	gene	2078925	2079536	.	-	.	ID=gene1818;Name=YPO1834;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1834
AL590842.1	EMBL	CDS	2078925	2079536	.	-	0	ID=cds1784;Parent=gene1818;Dbxref=GOA:Q7CHZ7,InterPro:IPR003265,InterPro:IPR003583,InterPro:IPR011257,InterPro:IPR023170,UniProtKB/TrEMBL:Q7CHZ7,NCBI_GP:CAL20475.1;Name=CAL20475.1;Note=Similar to Schizosaccharomyces pombe DNA-3-methyladenine glycosylase Mag1 SW:MAG1_SCHPO (Q92383) (228 aa) fasta scores: E(): 8.1e-13%2C 30.8%25 id in 195 aa%2Cand to Deinococcus radiodurans putative DNA-3-methyladenine glycosidase II DR2584 TR:Q9RRB0 (EMBL:AE002087) (225 aa) fasta scores: E(): 1.9e-21%2C 38.9%25 id in 193 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE002087;product=putative glycosidase;protein_id=CAL20475.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2079447	2079476	.	-	.	ID=id4288;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00339
AL590842.1	EMBL	pseudogene	2079697	2082652	.	-	.	ID=gene1819;Name=YPO1835;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO1835;pseudo=true
AL590842.1	EMBL	CDS	2079697	2082652	.	-	0	ID=cds1785;Parent=gene1819;Note=Similar to Vibrio cholerae chemotactic transducer-related protein Vca0895 TR:Q9KL53 (EMBL:AE004417) (981 aa) fasta scores: E(): 0%2C 36.3%25 id in 992 aa. There is a frameshift after codon 631. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=similar to sequence:INSDC:AE004417;product=putative chemotaxis protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	2081393	2081605	.	-	.	ID=id4289;Note=Pfam match to entry PF00672 DUF5%2C HAMP domain%2C score 29.30%2C E-value 8.6e-05;gbkey=misc_feature;inference=protein motif:PF00672
AL590842.1	EMBL	gene	2081543	2081599	.	-	.	ID=gene1820;Name=YPO1836;gbkey=Gene;gene_biotype=other;locus_tag=YPO1836
AL590842.1	EMBL	sequence_feature	2081543	2081599	.	-	.	ID=id4290;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2082542	2082607	.	-	.	ID=id4291;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2082542	2082607	.	-	.	ID=gene1821;Name=YPO1836;gbkey=Gene;gene_biotype=other;locus_tag=YPO1836
AL590842.1	EMBL	gene	2083006	2083881	.	-	.	ID=gene1822;Name=YPO1837;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1837
AL590842.1	EMBL	CDS	2083006	2083881	.	-	0	ID=cds1786;Parent=gene1822;Dbxref=GOA:Q0WFV7,InterPro:IPR003313,InterPro:IPR009057,InterPro:IPR018060,InterPro:IPR020449,UniProtKB/TrEMBL:Q0WFV7,NCBI_GP:CAL20477.1;Name=CAL20477.1;Note=Similar to Escherichia coli transcriptional activator PerA SW:PERA_ECOLI (P43459) (274 aa) fasta scores: E(): 6.4e-09%2C 25.1%25 id in 251 aa%2C and to Escherichia coli hypothetical transcriptional regulator YbcM SW:YBCM_ECOLI (P77634) (265 aa) fasta scores: E(): 4.5e-15%2C 30.4%25 id in 240 aa;gbkey=CDS;product=putative AraC-family transcriptional regulatory protein;protein_id=CAL20477.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2083078	2083335	.	-	.	ID=id4292;Note=Pfam match to entry PF00165 HTH_AraC%2C Bacterial regulatory helix-turn-helix proteins%2C araC family%2C score 78.10%2C E-value 1.8e-19;gbkey=misc_feature;inference=protein motif:PF00165
AL590842.1	EMBL	sequence_feature	2083099	2083227	.	-	.	ID=id4293;Note=PS00041 Bacterial regulatory proteins%2C araC family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00041
AL590842.1	EMBL	sequence_feature	2083267	2083332	.	-	.	ID=id4294;Note=Predicted helix-turn-helix motif with score 1305 (+3.63 SD) at aa 184-205%2C sequence WSASEVAEHMTMSEVVLRRKLA;gbkey=misc_feature
AL590842.1	EMBL	gene	2083888	2084127	.	-	.	ID=gene1823;Name=YPO1838;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1838
AL590842.1	EMBL	CDS	2083888	2084127	.	-	0	ID=cds1787;Parent=gene1823;Dbxref=UniProtKB/TrEMBL:Q0WFV6,NCBI_GP:CAL20478.1;Name=CAL20478.1;Note=Similar to the N-terminal region of Homo sapiens olfactory receptor Or17-16 TR:O43880 (EMBL:U86245) (216 aa) fasta scores: E(): 1.3%2C 24.3%25 id in 70 aa;gbkey=CDS;inference=similar to sequence:INSDC:U86245;product=putative membrane protein;protein_id=CAL20478.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2083963	2084028	.	-	.	ID=id4295;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2084041	2084106	.	-	.	ID=id4296;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2084182	2084544	.	-	.	ID=gene1824;Name=fliT;gbkey=Gene;gene=fliT;gene_biotype=protein_coding;locus_tag=YPO1839
AL590842.1	EMBL	CDS	2084182	2084544	.	-	0	ID=cds1788;Parent=gene1824;Dbxref=GOA:Q8D0B5,InterPro:IPR008622,NCBI_GP:CAL20479.1;Name=CAL20479.1;Note=Similar to Escherichia coli flagellar protein FliT SW:FLIT_ECOLI (P26610) (121 aa) fasta scores: E(): 1.8e-12%2C44.9%25 id in 107 aa%2C and to Salmonella typhimurium flagellar protein FliT SW:FLIT_SALTY (P26611) (122 aa) fasta scores: E(): 2.4e-09%2C 33.9%25 id in 109 aa;gbkey=CDS;gene=fliT;product=FliT;protein_id=CAL20479.1;transl_table=11
AL590842.1	EMBL	gene	2084555	2084953	.	-	.	ID=gene1825;Name=fliS;gbkey=Gene;gene=fliS;gene_biotype=protein_coding;locus_tag=YPO1840
AL590842.1	EMBL	CDS	2084555	2084953	.	-	0	ID=cds1789;Parent=gene1825;Dbxref=GOA:Q7CHZ8,InterPro:IPR003713,UniProtKB/TrEMBL:Q7CHZ8,NCBI_GP:CAL20480.1;Name=CAL20480.1;Note=Similar to Salmonella typhimurium flagellar protein FliS SW:FLIS_SALTY (P26609) (135 aa) fasta scores: E(): 1.7e-31%2C 69.3%25 id in 127 aa%2C and to Escherichia coli flagellar protein FliSSW:FLIS_ECOLI (P26608) (136 aa) fasta scores: E(): 5e-24%2C 56.5%25 id in 124 aa;gbkey=CDS;gene=fliS;product=flagellar protein FliS;protein_id=CAL20480.1;transl_table=11
AL590842.1	EMBL	gene	2084964	2086364	.	-	.	ID=gene1826;Name=flaV;gbkey=Gene;gene=flaV;gene_biotype=protein_coding;gene_synonym=flbC,fliD;locus_tag=YPO1841
AL590842.1	EMBL	CDS	2084964	2086364	.	-	0	ID=cds1790;Parent=gene1826;Dbxref=GOA:Q7CHZ9,InterPro:IPR003481,InterPro:IPR010809,InterPro:IPR010810,UniProtKB/TrEMBL:Q7CHZ9,NCBI_GP:CAL20481.1;Name=CAL20481.1;Note=Similar to Escherichia coli flagellar hook-associated protein 2 FliD or FlbC or FlaV SW:FLID_ECOLI (P24216) (467 aa) fasta scores: E(): 0%2C 48.6%25 id in 469 aa%2C and to Salmonella typhimurium flagellar hook-associated protein 2 FliD or FlbC or FlaV SW:FLID_SALTY (P16328) (466 aa) fasta scores: E(): 0%2C 48.0%25 id in 467 aa;gbkey=CDS;gene=flaV;product=flagellar hook-associated protein 2;protein_id=CAL20481.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2085000	2086337	.	-	.	ID=id4297;Note=Pfam match to entry PF02465 FliD%2C %2C score 468.30%2CE-value 6.3e-137;gbkey=misc_feature;gene=flaV;inference=protein motif:PF02465
AL590842.1	EMBL	gene	2086661	2087770	.	+	.	ID=gene1827;Name=flaF;gbkey=Gene;gene=flaF;gene_biotype=protein_coding;gene_synonym=fliC,hag;locus_tag=YPO1842
AL590842.1	EMBL	CDS	2086661	2087770	.	+	0	ID=cds1791;Parent=gene1827;Dbxref=GOA:Q7CI00,InterPro:IPR001029,InterPro:IPR001492,UniProtKB/TrEMBL:Q7CI00,NCBI_GP:CAL20482.1;Name=CAL20482.1;Note=Similar to Yersinia enterocolitica thermoregulated motility protein TR:Q56912 (EMBL:L33468) (364 aa) fasta scores: E(): 0%2C 59.5%25 id in 375 aa%2C and to Salmonella typhimurium flagellin FliCs(i) TR:Q02871 (EMBL:D13689) (495 aa) fasta scores: E(): 0%2C 51.9%25 id in 493 aa%2C and to Escherichia coli flagellin FliC or FlaF or HaG SW:FLIC_ECOLI (P04949) (497 aa) fasta scores: E(): 0%2C 49.3%25 id in 493 aa. This CDS has large internal deletions relative to E.coli and S. typhimurium. It has been reported that the central region of the S. typhimurium fliC gene%2Cwhich encodes the antigenic part of the protein%2C is hypervariable both between and within serovars (J. Bacteriol. 1999%2C 172(2): 603-609);gbkey=CDS;gene=flaF;inference=similar to sequence:INSDC:L33468;product=thermoregulated motility protein;protein_id=CAL20482.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2086742	2087164	.	+	.	ID=id4298;Note=Pfam match to entry PF00669 Flagellin_N%2C Bacterial flagellin N-terminus%2C score 267.90%2C E-value 1.3e-76;gbkey=misc_feature;gene=flaF;inference=protein motif:PF00669
AL590842.1	EMBL	sequence_feature	2087486	2087701	.	+	.	ID=id4299;Note=Pfam match to entry PF00700 Flagellin_C%2C Bacterial flagellin C-terminus%2C score 144.50%2C E-value 1.9e-39;gbkey=misc_feature;gene=flaF;inference=protein motif:PF00700
AL590842.1	EMBL	gene	2088117	2088839	.	+	.	ID=gene1828;Name=flaD;gbkey=Gene;gene=flaD;gene_biotype=protein_coding;gene_synonym=fliA;locus_tag=YPO1843
AL590842.1	EMBL	CDS	2088117	2088839	.	+	0	ID=cds1792;Parent=gene1828;Dbxref=GOA:Q7CI01,InterPro:IPR000943,InterPro:IPR007624,InterPro:IPR007627,InterPro:IPR007630,InterPro:IPR011991,InterPro:IPR012845,InterPro:IPR013324,InterPro:IPR013325,InterPro:IPR014284,InterPro:IPR028617,UniProtKB/TrEMBL:Q7CI01,NCBI_GP:CAL20483.1;Name=CAL20483.1;Note=Similar to Yersinia enterocolitica RNA polymerase sigma factor for flagellar operon FliA SW:FLIA_YEREN (P52621) (230 aa) fasta scores: E(): 0%2C 94.8%25 id in 230 aa%2Cand to Salmonella typhimurium RNA polymerase sigma factor for flagellar operon FliA SW:FLIA_SALTY (P17168) (239 aa) fasta scores: E(): 0%2C 83.1%25 id in 236 aa%2C and to Escherichia coli RNA polymerase sigma factor for flagellar operon Flia or FlaD SW:FLIA_ECOLI (P31804) (239 aa) fasta scores: E(): 0%2C 81.8%25 id in 236 aa;gbkey=CDS;gene=flaD;product=RNA polymerase sigma factor for flagellar operon;protein_id=CAL20483.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2088144	2088818	.	+	.	ID=id4300;Note=Pfam match to entry PF00140 sigma70%2C Sigma-70 factor%2C score 274.10%2C E-value 1.8e-78;gbkey=misc_feature;gene=flaD;inference=protein motif:PF00140
AL590842.1	EMBL	sequence_feature	2088729	2088794	.	+	.	ID=id4301;Note=Predicted helix-turn-helix motif with score 1242 (+3.42 SD) at aa 205-226%2C sequence LNLKEIGAVLEVGESRVSQLHS;gbkey=misc_feature;gene=flaD
AL590842.1	EMBL	sequence_feature	2088732	2088812	.	+	.	ID=id4302;Note=PS00716 Sigma-70 factors family signature 2.;gbkey=misc_feature;gene=flaD;inference=protein motif:ProSite:PS00716
AL590842.1	EMBL	gene	2089061	2089570	.	+	.	ID=gene1829;Name=fliZ;gbkey=Gene;gene=fliZ;gene_biotype=protein_coding;locus_tag=YPO1844
AL590842.1	EMBL	CDS	2089061	2089570	.	+	0	ID=cds1793;Parent=gene1829;Dbxref=GOA:Q7CI02,InterPro:IPR004107,InterPro:IPR022523,UniProtKB/TrEMBL:Q7CI02,NCBI_GP:CAL20484.1;Name=CAL20484.1;Note=Similar to Escherichia coli FliZ protein which is thought to regulate the flagella orperon sigma factor FliA SW:FLIZ_ECOLI (P52627) (183 aa) fasta scores: E(): 0%2C 52.5%25 id in 158 aa%2C and to Salmonella typhimurium FliZ TR:Q9S1C1 (EMBL:AB010947) (183 aa) fasta scores: E(): 0%2C 55.1%25 id in 167 aa;gbkey=CDS;gene=fliZ;inference=similar to sequence:INSDC:AB010947;product=putative alternative sigma factor regulatory protein;protein_id=CAL20484.1;transl_table=11
AL590842.1	EMBL	gene	2089859	2090851	.	+	.	ID=gene1830;Name=YedO;gbkey=Gene;gene=YedO;gene_biotype=protein_coding;locus_tag=YPO1845
AL590842.1	EMBL	CDS	2089859	2090851	.	+	0	ID=cds1794;Parent=gene1830;Dbxref=GOA:Q8ZF73,InterPro:IPR001926,InterPro:IPR005966,InterPro:IPR023702,InterPro:IPR027278,NCBI_GP:CAL20485.1;Name=CAL20485.1;Note=Similar to Pseudomonas sp 1-aminocyclopropane-1-carboxylate deaminase SW:1A1D_PSESP (Q00740) (338 aa) fasta scores: E(): 0%2C 39.5%25 id in 329 aa%2Cand to Escherichia coli putative 1-aminocyclopropane-1-carboxylate deaminase YedO SW:1A1D_ECOLI (P76316) (328 aa) fasta scores: E(): 0%2C 77.3%25 id in 326 aa;gbkey=CDS;gene=YedO;product=putative deaminase;protein_id=CAL20485.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2089895	2090815	.	+	.	ID=id4303;Note=Pfam match to entry PF00291 PALP%2CPyridoxal-phosphate dependent enzyme%2C score -8.70%2C E-value 2e-05;gbkey=misc_feature;gene=YedO;inference=protein motif:PF00291
AL590842.1	EMBL	gene	2090975	2091775	.	+	.	ID=gene1831;Name=fliY;gbkey=Gene;gene=fliY;gene_biotype=protein_coding;locus_tag=YPO1846
AL590842.1	EMBL	CDS	2090975	2091775	.	+	0	ID=cds1795;Parent=gene1831;Dbxref=GOA:Q7CI03,InterPro:IPR001638,InterPro:IPR018313,UniProtKB/TrEMBL:Q7CI03,NCBI_GP:CAL20486.1;Name=CAL20486.1;Note=Similar to Escherichia coli cystine-binding periplasmic protein precursor FliY SW:FLIY_ECOLI (P39174) (266 aa) fasta scores: E(): 0%2C 74.1%25 id in 266 aa%2C and to Salmonella typhimurium FliY TR:Q9ZNM2 (EMBL:AB010947) (266 aa) fasta scores: E(): 0%2C 74.8%25 id in 266 aa;gbkey=CDS;gene=fliY;inference=similar to sequence:INSDC:AB010947;product=putative cystine-binding periplasmic protein;protein_id=CAL20486.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2090975	2091754	.	+	.	ID=id4304;Note=Pfam match to entry PF00497 SBP_bac_3%2C Bacterial extracellular solute-binding proteins%2C family 3%2C score 272.10%2C E-value 7.2e-78;gbkey=misc_feature;gene=fliY;inference=protein motif:PF00497
AL590842.1	EMBL	sequence_feature	2091167	2091208	.	+	.	ID=id4305;Note=PS01039 Bacterial extracellular solute-binding proteins%2C family 3 signature.;gbkey=misc_feature;gene=fliY;inference=protein motif:ProSite:PS01039
AL590842.1	EMBL	gene	2091775	2092437	.	+	.	ID=gene1832;Name=yecS;gbkey=Gene;gene=yecS;gene_biotype=protein_coding;locus_tag=YPO1847
AL590842.1	EMBL	CDS	2091775	2092437	.	+	0	ID=cds1796;Parent=gene1832;Dbxref=GOA:Q7CI04,InterPro:IPR000515,InterPro:IPR010065,UniProtKB/TrEMBL:Q7CI04,NCBI_GP:CAL20487.1;Name=CAL20487.1;Note=Similar to Escherichia coli hypothetical amino-acid ABC transporter permease protein YecS SW:YECS_ECOLI (P76315) (222 aa) fasta scores: E(): 0%2C 80.5%25 id in 220 aa%2Cand to Bacillus halodurans amino acid ABC transporter Bh0171 TR:Q9KGD2 (EMBL:AP001507) (233 aa) fasta scores: E(): 0%2C 53.2%25 id in 203 aa;gbkey=CDS;gene=yecS;inference=similar to sequence:INSDC:AP001507;product=putative amino-acid ABC transporter (permease);protein_id=CAL20487.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2091832	2091900	.	+	.	ID=id4306;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=yecS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2091934	2092002	.	+	.	ID=id4307;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=yecS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2092102	2092314	.	+	.	ID=id4308;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 66.60%2C E-value 5.2e-16;gbkey=misc_feature;gene=yecS;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	2092105	2092191	.	+	.	ID=id4309;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;gene=yecS;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	2092327	2092395	.	+	.	ID=id4310;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=yecS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2092440	2093201	.	+	.	ID=gene1833;Name=yecC;gbkey=Gene;gene=yecC;gene_biotype=protein_coding;locus_tag=YPO1848
AL590842.1	EMBL	CDS	2092440	2093201	.	+	0	ID=cds1797;Parent=gene1833;Dbxref=GOA:Q7CI05,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CI05,NCBI_GP:CAL20488.1;Name=CAL20488.1;Note=Similar to Escherichia coli hypothetical amino-acid ABC transporter ATP-binding protein YecC SW:YECC_ECOLI (P37774) (250 aa) fasta scores: E(): 0%2C 77.0%25 id in 248 aa%2Cand to Haemophilus influenzae probable amino-acid ABC transporter ATP-binding protein Hi1078 hi1078 SW:YA78_HAEIN (P45022) (257 aa) fasta scores: E(): 0%2C 57.7%25 id in 246 aa. Paralogues: YPO2514%2C YPO2777%2C YPO3254%2C YPO2612%2C YPO1352;gbkey=CDS;gene=yecC;product=putative amino-acid ABC transporter (ATP-binding protein);protein_id=CAL20488.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2092524	2093099	.	+	.	ID=id4311;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 225.30%2C E-value 8.9e-64;gbkey=misc_feature;gene=yecC;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2092545	2092568	.	+	.	ID=id4312;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=yecC;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	2092872	2092916	.	+	.	ID=id4313;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=yecC;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	2093493	2093831	.	-	.	ID=gene1834;Name=YPO1849;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1849
AL590842.1	EMBL	CDS	2093493	2093831	.	-	0	ID=cds1798;Parent=gene1834;Dbxref=InterPro:IPR011991,InterPro:IPR013196,UniProtKB/TrEMBL:Q0WFU5,NCBI_GP:CAL20489.1;Name=CAL20489.1;Note=Similar to Pyrococcus abyssi transcriptional regulatory protein PAB1229 TR:Q9UY03 (EMBL:AJ248288) (184 aa) fasta scores: E(): 0.0023%2C 37.8%25 id in 74 aa%2C and to Thermotoga maritima transcriptional regulator%2Cmetal-sensing TM1176 TR:Q9X0Q8 (EMBL:AE001774) (89 aa) fasta scores: E(): 4.4%2C 26.3%25 id in 80 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ248288;product=conserved hypothetical protein;protein_id=CAL20489.1;transl_table=11
AL590842.1	EMBL	gene	2093865	2094200	.	-	.	ID=gene1835;Name=YPO1850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1850
AL590842.1	EMBL	CDS	2093865	2094200	.	-	0	ID=cds1799;Parent=gene1835;Dbxref=UniProtKB/TrEMBL:Q7CI06,NCBI_GP:CAL20490.1;Name=CAL20490.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20490.1;transl_table=11
AL590842.1	EMBL	gene	2094664	2098635	.	-	.	ID=gene1836;Name=poaA;gbkey=Gene;gene=poaA;gene_biotype=protein_coding;gene_synonym=putA;locus_tag=YPO1851
AL590842.1	EMBL	CDS	2094664	2098635	.	-	0	ID=cds1800;Parent=gene1836;Dbxref=GOA:Q0WFU3,InterPro:IPR002872,InterPro:IPR005933,InterPro:IPR010985,InterPro:IPR015590,InterPro:IPR016160,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,InterPro:IPR024082,InterPro:IPR024089,InterPro:IPR024090,InterPro:IPR025703,InterPro:IPR029041,InterPro:IPR029510,UniProtKB/TrEMBL:Q0WFU3,NCBI_GP:CAL20491.1;Name=CAL20491.1;Note=Similar to Escherichia coli bifunctional PutA or PoaA protein [includes: proline dehydrogenase and delta-1-pyrroline-5-carboxylate SW:PUTA_ECOLI (P09546) (1320 aa) fasta scores: E(): 0%2C 79.4%25 id in 1323 aa%2C and to Salmonella typhimurium bifunctional PutA protein [includes: proline dehydrogenase putA SW:PUTA_SALTY (P10503) (1320 aa) fasta scores: E(): 0%2C 78.4%25 id in 1324 aa;gbkey=CDS;gene=poaA;product=bifunctional PutA protein [includes: proline dehydrogenase and delta-1-pyrroline-5-carboxylate;protein_id=CAL20491.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2095270	2096676	.	-	.	ID=id4314;Note=Pfam match to entry PF00171 aldedh%2C Aldehyde dehydrogenase family%2C score 327.70%2C E-value 1.3e-94;gbkey=misc_feature;gene=poaA;inference=protein motif:PF00171
AL590842.1	EMBL	sequence_feature	2095870	2095905	.	-	.	ID=id4315;Note=PS00070 Aldehyde dehydrogenases cysteine active site.;gbkey=misc_feature;gene=poaA;inference=protein motif:ProSite:PS00070
AL590842.1	EMBL	sequence_feature	2095966	2095989	.	-	.	ID=id4316;Note=PS00687 Aldehyde dehydrogenases glutamic acid active site.;gbkey=misc_feature;gene=poaA;inference=protein motif:ProSite:PS00687
AL590842.1	EMBL	sequence_feature	2096911	2097951	.	-	.	ID=id4317;Note=Pfam match to entry PF01619 Pro_dh%2C Proline dehydrogenase%2C score 616.80%2C E-value 1.2e-181;gbkey=misc_feature;gene=poaA;inference=protein motif:PF01619
AL590842.1	EMBL	gene	2098980	2099177	.	+	.	ID=gene1837;Name=YPO1852;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1852
AL590842.1	EMBL	CDS	2098980	2099177	.	+	0	ID=cds1801;Parent=gene1837;Dbxref=UniProtKB/TrEMBL:Q7CI07,NCBI_GP:CAL20492.1;Name=CAL20492.1;Note=No significant database matches;gbkey=CDS;product=putative membrane protein;protein_id=CAL20492.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2099007	2099075	.	+	.	ID=id4318;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2099207	2100691	.	+	.	ID=gene1838;Name=putP;gbkey=Gene;gene=putP;gene_biotype=protein_coding;locus_tag=YPO1853
AL590842.1	EMBL	CDS	2099207	2100691	.	+	0	ID=cds1802;Parent=gene1838;Dbxref=GOA:Q7CI08,InterPro:IPR001734,InterPro:IPR011851,InterPro:IPR018212,InterPro:IPR019900,UniProtKB/TrEMBL:Q7CI08,NCBI_GP:CAL20493.1;Name=CAL20493.1;Note=Similar to Salmonella sp. proline permease PutP TR:Q57245 (EMBL:L01145) (489 aa) fasta scores: E(): 0%2C81.8%25 id in 489 aa%2C and to Escherichia coli sodium/proline symporter PutP SW:PUTP_ECOLI (P07117) (502 aa) fasta scores: E(): 0%2C 80.1%25 id in 493 aa;gbkey=CDS;gene=putP;inference=similar to sequence:INSDC:L01145;product=proline permease;protein_id=CAL20493.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2099225	2099293	.	+	.	ID=id4319;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=putP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2099309	2100517	.	+	.	ID=id4320;Note=Pfam match to entry PF00474 SSF%2C Sodium:solute symporter family%2C score 660.50%2C E-value 8.5e-195;gbkey=misc_feature;gene=putP;inference=protein motif:PF00474
AL590842.1	EMBL	sequence_feature	2099402	2099470	.	+	.	ID=id4321;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=putP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2099585	2099653	.	+	.	ID=id4322;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=putP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2099675	2099752	.	+	.	ID=id4323;Note=PS00456 Sodium:solute symporter family signature 1.;gbkey=misc_feature;gene=putP;inference=protein motif:ProSite:PS00456
AL590842.1	EMBL	sequence_feature	2099696	2099764	.	+	.	ID=id4324;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=putP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2099783	2099842	.	+	.	ID=id4325;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=putP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2099885	2099953	.	+	.	ID=id4326;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=putP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2100023	2100091	.	+	.	ID=id4327;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=putP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2100191	2100259	.	+	.	ID=id4328;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=putP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2100320	2100379	.	+	.	ID=id4329;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=putP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2100407	2100475	.	+	.	ID=id4330;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=putP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2100461	2100523	.	+	.	ID=id4331;Note=PS00457 Sodium:solute symporter family signature 2.;gbkey=misc_feature;gene=putP;inference=protein motif:ProSite:PS00457
AL590842.1	EMBL	sequence_feature	2100488	2100556	.	+	.	ID=id4332;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=putP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2100569	2100625	.	+	.	ID=id4333;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=putP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2101024	2101872	.	+	.	ID=gene1839;Name=YPO1854;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1854
AL590842.1	EMBL	CDS	2101024	2101872	.	+	0	ID=cds1803;Parent=gene1839;Dbxref=GOA:Q0WFU0,InterPro:IPR004923,NCBI_GP:CAL20494.1;Name=CAL20494.1;Note=Similar to Escherichia coli hypothetical 30.3 kDa protein in putP-phoH intergenic region SW:YCDN_ECOLI (P75901) (276 aa) fasta scores: E(): 0%2C 75.4%25 id in 276 aa%2Cand to Neisseria meningitidis putative integral membrane protein Nma0280 TR:Q9JWN7 (EMBL:AL162752) (279 aa) fasta scores: E(): 0%2C 52.8%25 id in 269 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL162752;product=putative membrane protein;protein_id=CAL20494.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2101123	2101191	.	+	.	ID=id4334;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2101234	2101290	.	+	.	ID=id4335;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2101378	2101446	.	+	.	ID=id4336;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2101474	2101542	.	+	.	ID=id4337;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2101561	2101629	.	+	.	ID=id4338;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2101747	2101815	.	+	.	ID=id4339;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2101902	2103032	.	+	.	ID=gene1840;Name=YPO1855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1855
AL590842.1	EMBL	CDS	2101902	2103032	.	+	0	ID=cds1804;Parent=gene1840;Dbxref=GOA:Q0WFT9,InterPro:IPR008972,InterPro:IPR028096,NCBI_GP:CAL20495.1;Name=CAL20495.1;Note=Similar to Escherichia coli 41.1 kDa protein in putB-phoH intergenic region YcdO SW:YCDO_ECOLI (P75902) (375 aa) fasta scores: E(): 0%2C 74.1%25 id in 371 aa%2C and to Neisseria meningitidis hypothetical protein Nmb0035 TR:Q9K1P6 (EMBL:AE002362) (388 aa) fasta scores: E(): 0%2C59.5%25 id in 358 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE002362;product=putative exported protein;protein_id=CAL20495.1;transl_table=11
AL590842.1	EMBL	gene	2103043	2104347	.	+	.	ID=gene1841;Name=YPO1856;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1856
AL590842.1	EMBL	CDS	2103043	2104347	.	+	0	ID=cds1805;Parent=gene1841;Dbxref=GOA:Q7CI09,InterPro:IPR006311,InterPro:IPR006313,InterPro:IPR006314,InterPro:IPR011008,NCBI_GP:CAL20496.1;Name=CAL20496.1;Note=Similar to Escherichia coli hypothetical protein YcdB SW:YCDB_ECOLI (P31545) (423 aa) fasta scores: E(): 0%2C71.9%25 id in 423 aa%2C and to Neisseria meningitidis hypothetical protein NMB0036 TR:Q9K1P5 (EMBL:AE002362) (421 aa) fasta scores: E(): 0%2C 50.6%25 id in 425 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE002362;product=conserved hypothetical protein;protein_id=CAL20496.1;transl_table=11
AL590842.1	EMBL	gene	2104433	2105032	.	-	.	ID=gene1842;Name=wrbA;gbkey=Gene;gene=wrbA;gene_biotype=protein_coding;locus_tag=YPO1857
AL590842.1	EMBL	CDS	2104433	2105032	.	-	0	ID=cds1806;Parent=gene1842;Dbxref=GOA:Q8ZF61,InterPro:IPR005025,InterPro:IPR008254,InterPro:IPR010089,InterPro:IPR029039,NCBI_GP:CAL20497.1;Name=CAL20497.1;Note=Similar to Escherichia coli trp repressor binding protein WrbA SW:WRBA_ECOLI (P30849) (197 aa) fasta scores: E(): 0%2C 82.3%25 id in 198 aa%2C and to Zymomonas mobilis trp repressor binding protein TR:Q9XBR5 (EMBL:AF157493) (199 aa) fasta scores: E(): 0%2C 54.0%25 id in 198 aa%2C and to Phanerochaete chrysosporium 1%2C4-benzoquinone reductase TR:Q9Y763 (EMBL:AF106939) (201 aa) fasta scores: E(): 0%2C49.5%25 id in 200 aa. It has been proposed that the WrbA protein may function as an accessory element in blocking TrpR-specific transcriptional processes that might be physiologically disadvantageous in the stationary phase of the bacterial life cycle. Proc. Natl. Acad. Sci. U.S.A. (1993)%2C 90:5796-5800;gbkey=CDS;gene=wrbA;inference=similar to sequence:INSDC:AF157493;product=trp repressor binding protein;protein_id=CAL20497.1;transl_table=11
AL590842.1	EMBL	gene	2105426	2106604	.	+	.	ID=gene1843;Name=YPO1858;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1858
AL590842.1	EMBL	CDS	2105426	2106604	.	+	0	ID=cds1807;Parent=gene1843;Dbxref=GOA:Q7CI10,InterPro:IPR006652,InterPro:IPR015915,InterPro:IPR019936,NCBI_GP:CAL20498.1;Name=CAL20498.1;Note=Similar to Haemophilus influenzae hypothetical protein Hi0148 SW:YJHT_HAEIN (P44544) (379 aa) fasta scores: E(): 0%2C 46.3%25 id in 374 aa%2C and to Escherichia coli hypothetical 39.6 kDa protein in fecI-fimB intergenic region SW:YJHT_ECOLI (P39371) (368 aa) fasta scores: E(): 0%2C 39.7%25 id in 373 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL20498.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2105693	2105851	.	+	.	ID=id4340;Note=Pfam match to entry PF01344 Kelch%2C Kelch motif%2Cscore 35.80%2C E-value 1e-06;gbkey=misc_feature;inference=protein motif:PF01344
AL590842.1	EMBL	gene	2106730	2108154	.	-	.	ID=gene1844;Name=cycA;gbkey=Gene;gene=cycA;gene_biotype=protein_coding;gene_synonym=dagA;locus_tag=YPO1859
AL590842.1	EMBL	CDS	2106730	2108154	.	-	0	ID=cds1808;Parent=gene1844;Dbxref=GOA:Q7CI11,InterPro:IPR002293,InterPro:IPR004840,InterPro:IPR004841,UniProtKB/TrEMBL:Q7CI11,NCBI_GP:CAL20499.1;Name=CAL20499.1;Note=Similar to Escherichia coli D-serine/D-alanine/glycine transporter CycA or DagA SW:CYCA_ECOLI (P39312) (470 aa) fasta scores: E(): 0%2C 81.9%25 id in 465 aa%2C and to Mycobacterium tuberculosis D-serine/D-alanine/glycine transporter CycA or Rv1704c or mtci125.26C TR:O33203 (EMBL:Z98268) (556 aa) fasta scores: E(): 0%2C 58.3%25 id in 458 aa;gbkey=CDS;gene=cycA;inference=similar to sequence:INSDC:Z98268;product=D-serine/D-alanine/glycine transporter;protein_id=CAL20499.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2106760	2108091	.	-	.	ID=id4341;Note=Pfam match to entry PF00324 aa_permeases%2C Amino acid permease%2C score 667.40%2C E-value 7.5e-197;gbkey=misc_feature;gene=cycA;inference=protein motif:PF00324
AL590842.1	EMBL	sequence_feature	2106766	2106822	.	-	.	ID=id4342;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cycA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2106853	2106918	.	-	.	ID=id4343;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cycA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2106955	2107020	.	-	.	ID=id4344;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cycA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2107051	2107116	.	-	.	ID=id4345;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cycA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2107213	2107278	.	-	.	ID=id4346;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cycA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2107324	2107389	.	-	.	ID=id4347;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cycA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2107450	2107515	.	-	.	ID=id4348;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cycA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2107591	2107656	.	-	.	ID=id4349;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cycA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2107672	2107737	.	-	.	ID=id4350;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cycA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2107798	2107863	.	-	.	ID=id4351;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cycA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2107900	2107992	.	-	.	ID=id4352;Note=PS00218 Amino acid permeases signature.;gbkey=misc_feature;gene=cycA;inference=protein motif:ProSite:PS00218
AL590842.1	EMBL	sequence_feature	2107927	2107977	.	-	.	ID=id4353;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cycA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2107990	2108055	.	-	.	ID=id4354;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cycA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	tRNA	2108507	2108582	.	+	.	ID=rna42;Note=tRNA Lys anticodon CTT%2C Cove score 96.54;gbkey=tRNA;product=tRNA-Lys
AL590842.1	EMBL	exon	2108507	2108582	.	+	.	ID=id4355;Parent=rna42;Note=tRNA Lys anticodon CTT%2C Cove score 96.54;gbkey=tRNA;product=tRNA-Lys
AL590842.1	EMBL	gene	2109269	2109820	.	+	.	ID=gene1845;Name=ail;gbkey=Gene;gene=ail;gene_biotype=protein_coding;locus_tag=YPO1860
AL590842.1	EMBL	CDS	2109269	2109820	.	+	0	ID=cds1809;Parent=gene1845;Dbxref=GOA:Q7CI12,InterPro:IPR000758,InterPro:IPR011250,InterPro:IPR027385,UniProtKB/TrEMBL:Q7CI12,NCBI_GP:CAL20500.1;Name=CAL20500.1;Note=Similar to Yersinia enterocolitica attachment invasion locus protein precursor Ail SW:AIL_YEREN (P16454) (178 aa) fasta scores: E(): 3.3e-28%2C 47.8%25 id in 184 aa%2Cand to Yersinia pseudotuberculosis attachment invasion locus protein precursor Ail SW:AIL_YERPS (Q56957) (182 aa) fasta scores: E(): 5.8e-26%2C 44.8%25 id in 183 aa. Similar to YPO2905%2C YPO2190 and YPO2506;gbkey=CDS;gene=ail;product=attachment invasion locus protein;protein_id=CAL20500.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2109791	2109817	.	+	.	ID=id4356;Note=PS00695 Enterobacterial virulence outer membrane protein signature 2.;gbkey=misc_feature;gene=ail;inference=protein motif:ProSite:PS00695
AL590842.1	EMBL	gene	2109859	2110041	.	-	.	ID=gene1846;Name=YPO1861;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1861
AL590842.1	EMBL	CDS	2109859	2110041	.	-	0	ID=cds1810;Parent=gene1846;Dbxref=UniProtKB/TrEMBL:Q74V06,NCBI_GP:CAL20501.1;Name=CAL20501.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20501.1;transl_table=11
AL590842.1	EMBL	gene	2110160	2110414	.	+	.	ID=gene1847;Name=YPO1862;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1862
AL590842.1	EMBL	CDS	2110160	2110414	.	+	0	ID=cds1811;Parent=gene1847;Dbxref=UniProtKB/TrEMBL:Q7CI13,NCBI_GP:CAL20502.1;Name=CAL20502.1;Note=No significant database matches;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL20502.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2110211	2110279	.	+	.	ID=id4357;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2110340	2110408	.	+	.	ID=id4358;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2110442	2110783	.	-	.	ID=gene1848;Name=glpM;gbkey=Gene;gene=glpM;gene_biotype=protein_coding;gene_synonym=ydgC;locus_tag=YPO1863
AL590842.1	EMBL	CDS	2110442	2110783	.	-	0	ID=cds1812;Parent=gene1848;Dbxref=InterPro:IPR009707,UniProtKB/TrEMBL:Q0WFT1,NCBI_GP:CAL20503.1;Name=CAL20503.1;Note=Similar to Escherichia coli hypothetical 12.5 kDa protein in pntA-rstA intergenic region YdgC SW:YDGC_ECOLI (P52110) (111 aa) fasta scores: E(): 1.1e-26%2C 58.6%25 id in 111 aa%2C and to Pseudomonas aeruginosa membrane protein GlpM SW:GLPM_PSEAE (P52112) (109 aa) fasta scores: E(): 4.8e-25%2C56.0%25 id in 109 aa. In P. aeruginosa%2C GlpM could play a role in alginate biosynthesis. J. Bacteriol.(1995) 177:4801-4804(1995);gbkey=CDS;gene=glpM;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL20503.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2110463	2110528	.	-	.	ID=id4359;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=glpM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2110544	2110600	.	-	.	ID=id4360;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=glpM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2110646	2110702	.	-	.	ID=id4361;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=glpM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2110911	2111135	.	-	.	ID=gene1849;Name=YPO1864;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1864
AL590842.1	EMBL	CDS	2110911	2111135	.	-	0	ID=cds1813;Parent=gene1849;Dbxref=InterPro:IPR019705,UniProtKB/TrEMBL:Q74V09,NCBI_GP:CAL20504.1;Name=CAL20504.1;Note=Similar to Escherichia coli hypothetical protein YecF SW:YECF_ECOLI (P46120) (74 aa) fasta scores: E(): 1.4e-16%2C 60.8%25 id in 74 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL20504.1;transl_table=11
AL590842.1	EMBL	gene	2111798	2112454	.	+	.	ID=gene1850;Name=uvrY;gbkey=Gene;gene=uvrY;gene_biotype=protein_coding;locus_tag=YPO1865
AL590842.1	EMBL	CDS	2111798	2112454	.	+	0	ID=cds1814;Parent=gene1850;Dbxref=GOA:Q7CI14,InterPro:IPR000792,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:Q7CI14,NCBI_GP:CAL20505.1;Name=CAL20505.1;Note=Similar to Escherichia coli UvrY protein SW:UVRY_ECOLI (P07027) (218 aa) fasta scores: E(): 0%2C 82.9%25 id in 217 aa%2C and to Salmonella typhimurium SirA TR:P96058 (EMBL:U67869) (218 aa) fasta scores: E(): 0%2C 83.9%25 id in 217 aa;gbkey=CDS;gene=uvrY;inference=similar to sequence:INSDC:U67869;product=response regulator protein;protein_id=CAL20505.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2111801	2112142	.	+	.	ID=id4362;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 140.70%2C E-value 2.7e-38;gbkey=misc_feature;gene=uvrY;inference=protein motif:PF00072
AL590842.1	EMBL	sequence_feature	2112233	2112430	.	+	.	ID=id4363;Note=Pfam match to entry PF00196 GerE%2C Bacterial regulatory proteins%2C luxR family%2C score 100.20%2C E-value 3.9e-26;gbkey=misc_feature;gene=uvrY;inference=protein motif:PF00196
AL590842.1	EMBL	sequence_feature	2112284	2112367	.	+	.	ID=id4364;Note=PS00622 Bacterial regulatory proteins%2C luxR family signature.;gbkey=misc_feature;gene=uvrY;inference=protein motif:ProSite:PS00622
AL590842.1	EMBL	gene	2112447	2114279	.	+	.	ID=gene1851;Name=uvrC;gbkey=Gene;gene=uvrC;gene_biotype=protein_coding;locus_tag=YPO1866
AL590842.1	EMBL	CDS	2112447	2114279	.	+	0	ID=cds1815;Parent=gene1851;Dbxref=GOA:Q8ZF52,InterPro:IPR000305,InterPro:IPR001162,InterPro:IPR001943,InterPro:IPR003583,InterPro:IPR004791,InterPro:IPR010994,InterPro:IPR027299,NCBI_GP:CAL20506.1;Name=CAL20506.1;Note=Similar to Escherichia coli excinuclease ABC subunit C UvrC SW:UVRC_ECOLI (P07028) (610 aa) fasta scores: E(): 0%2C 83.1%25 id in 610 aa%2C and to Salmonella typhimurium excinuclease ABC subunit C SW:UVRC_SALTY (O66041) (608 aa) fasta scores: E(): 0%2C 81.7%25 id in 606 aa;gbkey=CDS;gene=uvrC;product=excinuclease ABC subunit C;protein_id=CAL20506.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2112495	2112764	.	+	.	ID=id4365;Note=Pfam match to entry PF01541 Exci_endo_N%2CEndo/excinuclease amino terminal domain%2C score 110.40%2CE-value 3.4e-29;gbkey=misc_feature;gene=uvrC;inference=protein motif:PF01541
AL590842.1	EMBL	sequence_feature	2113056	2113163	.	+	.	ID=id4366;Note=Pfam match to entry PF02151 UVR%2C UvrB/uvrC motif%2Cscore 46.60%2C E-value 5.4e-10;gbkey=misc_feature;gene=uvrC;inference=protein motif:PF02151
AL590842.1	EMBL	sequence_feature	2113434	2113481	.	+	.	ID=id4367;Note=PS00216 Sugar transport proteins signature 1.;gbkey=misc_feature;gene=uvrC;inference=protein motif:ProSite:PS00216
AL590842.1	EMBL	sequence_feature	2114178	2114267	.	+	.	ID=id4368;Note=Pfam match to entry PF00633 HHH%2C Helix-hairpin-helix motif.%2C score 40.70%2C E-value 3.3e-08;gbkey=misc_feature;gene=uvrC;inference=protein motif:PF00633
AL590842.1	EMBL	gene	2114338	2114886	.	+	.	ID=gene1852;Name=pgsA;gbkey=Gene;gene=pgsA;gene_biotype=protein_coding;locus_tag=YPO1867
AL590842.1	EMBL	CDS	2114338	2114886	.	+	0	ID=cds1816;Parent=gene1852;Dbxref=GOA:Q8ZF51,InterPro:IPR000462,InterPro:IPR004570,InterPro:IPR023762,NCBI_GP:CAL20507.1;Name=CAL20507.1;Note=Similar to Escherichia coli CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PgsA SW:PGSA_ECOLI (P06978) (181 aa) fasta scores: E(): 0%2C 75.0%25 id in 180 aa;gbkey=CDS;gene=pgsA;inference=protein motif:TMHMM:2.0;product=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase;protein_id=CAL20507.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2114395	2114463	.	+	.	ID=id4369;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=pgsA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2114443	2114871	.	+	.	ID=id4370;Note=Pfam match to entry PF01066 CDP-OH_P_transf%2CCDP-alcohol phosphatidyltransferase%2C score 207.90%2C E-value 1.5e-58;gbkey=misc_feature;gene=pgsA;inference=protein motif:PF01066
AL590842.1	EMBL	sequence_feature	2114482	2114550	.	+	.	ID=id4371;Note=PS00379 CDP-alcohol phosphatidyltransferases signature.;gbkey=misc_feature;gene=pgsA;inference=protein motif:ProSite:PS00379
AL590842.1	EMBL	sequence_feature	2114797	2114865	.	+	.	ID=id4372;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=pgsA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	tRNA	2115031	2115106	.	+	.	ID=rna43;Note=tRNA Gly anticodon GCC%2C Cove score 93.74;gbkey=tRNA;product=tRNA-Gly
AL590842.1	EMBL	exon	2115031	2115106	.	+	.	ID=id4373;Parent=rna43;Note=tRNA Gly anticodon GCC%2C Cove score 93.74;gbkey=tRNA;product=tRNA-Gly
AL590842.1	EMBL	tRNA	2115159	2115232	.	+	.	ID=rna44;Note=tRNA Cys anticodon GCA%2C Cove score 58.23;gbkey=tRNA;product=tRNA-Cys
AL590842.1	EMBL	exon	2115159	2115232	.	+	.	ID=id4374;Parent=rna44;Note=tRNA Cys anticodon GCA%2C Cove score 58.23;gbkey=tRNA;product=tRNA-Cys
AL590842.1	EMBL	tRNA	2115243	2115328	.	+	.	ID=rna45;Note=tRNA Leu anticodon TAA%2C Cove score 73.10;gbkey=tRNA;product=tRNA-Leu
AL590842.1	EMBL	exon	2115243	2115328	.	+	.	ID=id4375;Parent=rna45;Note=tRNA Leu anticodon TAA%2C Cove score 73.10;gbkey=tRNA;product=tRNA-Leu
AL590842.1	EMBL	gene	2115626	2116141	.	-	.	ID=gene1853;Name=YPO1868;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1868
AL590842.1	EMBL	CDS	2115626	2116141	.	-	0	ID=cds1817;Parent=gene1853;Dbxref=GOA:Q0WFS6,InterPro:IPR002104,InterPro:IPR011010,InterPro:IPR013762,UniProtKB/TrEMBL:Q0WFS6,NCBI_GP:CAL20508.1;Name=CAL20508.1;Note=Weakly similar to the C-terminal region of Bacteriophage 434 integrase SW:VINT_BP434 (P27078) (356 aa) fasta scores: E(): 0.021%2C 23.8%25 id in 172 aa%2C and to Escherichia coli prophage lambda integrase SW:INTE_ECOLI (P75969) (375 aa) fasta scores: E(): 3.7%2C 23.3%25 id in 163 aa;gbkey=CDS;product=hypothetical protein;protein_id=CAL20508.1;transl_table=11
AL590842.1	EMBL	gene	2116252	2116479	.	+	.	ID=gene1854;Name=YPO1869;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1869
AL590842.1	EMBL	CDS	2116252	2116479	.	+	0	ID=cds1818;Parent=gene1854;Dbxref=GOA:Q7CI16,InterPro:IPR007694,UniProtKB/TrEMBL:Q7CI16,NCBI_GP:CAL20509.1;Name=CAL20509.1;Note=Similar to the C-terminal region of Bacteriophage P22 replicative DNA helicase SW:VG12_BPP22 (P03006) (458 aa) fasta scores: E(): 8.8e-12%2C 57.7%25 id in 71 aa%3B~was marked partial;gbkey=CDS;product=replicative DNA helicase (partial);protein_id=CAL20509.1;transl_table=11
AL590842.1	EMBL	gene	2116848	2116994	.	+	.	ID=gene1855;Name=YPO1870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1870
AL590842.1	EMBL	CDS	2116848	2116994	.	+	0	ID=cds1819;Parent=gene1855;Dbxref=UniProtKB/TrEMBL:Q74V13,NCBI_GP:CAL20510.1;Name=CAL20510.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20510.1;transl_table=11
AL590842.1	EMBL	gene	2117816	2117974	.	-	.	ID=gene1856;Name=YPO1871;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1871
AL590842.1	EMBL	CDS	2117816	2117974	.	-	0	ID=cds1820;Parent=gene1856;Dbxref=UniProtKB/TrEMBL:Q0WFS3,NCBI_GP:CAL20511.1;Name=CAL20511.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20511.1;transl_table=11
AL590842.1	EMBL	gene	2118003	2118347	.	-	.	ID=gene1857;Name=YPO1872;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1872
AL590842.1	EMBL	CDS	2118003	2118347	.	-	0	ID=cds1821;Parent=gene1857;Dbxref=InterPro:IPR008514,UniProtKB/TrEMBL:Q74V16,NCBI_GP:CAL20512.1;Name=CAL20512.1;Note=Similar to the N-terminal region of Escherichia coli hypothetical protein YhhZ SW:YHHZ_ECOLI (P46855) (392 aa) fasta scores: E(): 8.2e-14%2C 45.9%25 id in 109 aa%2C and to Escherichia coli hypothetical protein TR:O52671 (EMBL:AF044503) (172 aa) fasta scores: E(): 0.042%2C 30.1%25 id in 123 aa. Similar to YPO2793%2C YPO2962 and YPO2868.;gbkey=CDS;inference=similar to sequence:INSDC:AF044503;product=conserved hypothetical protein;protein_id=CAL20512.1;transl_table=11
AL590842.1	EMBL	gene	2118567	2119526	.	-	.	ID=gene1858;Name=tnpA;gbkey=Gene;gene=tnpA;gene_biotype=protein_coding;locus_tag=YPO1873
AL590842.1	EMBL	CDS	2118567	2119526	.	-	0	ID=cds1822;Parent=gene1858;Dbxref=GOA:Q7CI17,InterPro:IPR001584,InterPro:IPR012337,UniProtKB/TrEMBL:Q7CI17,NCBI_GP:CAL20513.1;Name=CAL20513.1;Note=Similar to Pseudomonas syringae transposase TnpA TR:Q52559 (EMBL:L48985) (343 aa) fasta scores: E(): 0%2C60.5%25 id in 319 aa%2C and to Mycobacterium intracellulare transposase TR:Q49592 (EMBL:L10239) (340 aa) fasta scores: E(): 0%2C 37.4%25 id in 302 aa;gbkey=CDS;gene=tnpA;inference=similar to sequence:INSDC:L48985;product=putative transposase;protein_id=CAL20513.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2118717	2119208	.	-	.	ID=id4376;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 121.20%2C E-value 6.7e-34;gbkey=misc_feature;gene=tnpA;inference=protein motif:PF00665
AL590842.1	EMBL	gene	2119598	2120044	.	-	.	ID=gene1859;Name=YPO1874;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1874
AL590842.1	EMBL	CDS	2119598	2120044	.	-	0	ID=cds1823;Parent=gene1859;Dbxref=GOA:Q7CI18,InterPro:IPR002514,InterPro:IPR009057,UniProtKB/TrEMBL:Q7CI18,NCBI_GP:CAL20514.1;Name=CAL20514.1;Note=Similar to Pseudomonas syringae ORF within IS1240 TR:Q52560 (EMBL:L48985) (153 aa) fasta scores: E(): 5.3e-25%2C 49.3%25 id in 150 aa%2C and to Pseudomonas putida hypothetical protein TR:Q9WWW7 (EMBL:AJ233397) (154 aa) fasta scores: E(): 2.6e-22%2C 49.3%25 id in 142 aa;gbkey=CDS;inference=similar to sequence:INSDC:L48985;product=conserved hypothetical protein;protein_id=CAL20514.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2119952	2120017	.	-	.	ID=id4377;Note=Predicted helix-turn-helix motif with score 1957 (+5.85 SD) at aa 10-31%2C sequence MTVTAVAQMEGISEATLYNWRN;gbkey=misc_feature
AL590842.1	EMBL	gene	2120128	2120268	.	-	.	ID=gene1860;Name=YPO1875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1875
AL590842.1	EMBL	CDS	2120128	2120268	.	-	0	ID=cds1824;Parent=gene1860;Dbxref=UniProtKB/TrEMBL:Q7CI19,NCBI_GP:CAL20515.1;Name=CAL20515.1;Note=Similar to the N-terminal parts of Bacteriophage P2 major tail sheath protein FI SW:VPF1_BPP2 (P22501) (395 aa) fasta scores: E(): 4.2e-12%2C 76.2%25 id in 42 aa%2C and to Salmonella typhi hypothetical 42.1 kDa protein TR:Q9RPM5 (EMBL:AF153829) (390 aa) fasta scores: E(): 6.3e-12%2C 74.4%25 id in 39 aa%3B~was marked partial;gbkey=CDS;inference=similar to sequence:INSDC:AF153829;product=putative major tail sheath protein (partial);protein_id=CAL20515.1;transl_table=11
AL590842.1	EMBL	gene	2120433	2120687	.	-	.	ID=gene1861;Name=YPO1876;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1876
AL590842.1	EMBL	CDS	2120433	2120687	.	-	0	ID=cds1825;Parent=gene1861;Dbxref=UniProtKB/TrEMBL:Q74V19,NCBI_GP:CAL20516.1;Name=CAL20516.1;Note=Similar to the C-terminal regions of Euglena gracilis putative NADH dehydrogenase subunit 6 Nd6 TR:Q9XN18 (EMBL:AF156178) (161 aa) fasta scores: E(): 4.5%2C25.7%25 id in 74 aa%2C and to Dorymyrmex insanus cytochrome B TR:Q9MP31 (EMBL:AF146717) (238 aa) fasta scores: E(): 8.4%2C31.9%25 id in 72 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF156178;product=putative membrane protein;protein_id=CAL20516.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2120484	2120549	.	-	.	ID=id4378;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2120622	2120678	.	-	.	ID=id4379;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2120692	2120997	.	-	.	ID=gene1862;Name=YPO1877;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1877
AL590842.1	EMBL	CDS	2120692	2120997	.	-	0	ID=cds1826;Parent=gene1862;Dbxref=InterPro:IPR021225,UniProtKB/TrEMBL:Q7CI20,NCBI_GP:CAL20517.1;Name=CAL20517.1;Note=Weakly similar to internal regions of Nicotiana tabacum cytochrome P450 Hsr515 TR:Q42959 (EMBL:X96784) (498 aa) fasta scores: E(): 1.8%2C 25.3%25 id in 83 aa%2C and to Human poliovirus 1 polyprotein TR:O92270 (EMBL:AF083931) (302 aa) fasta scores: E(): 5.6%2C 30.3%25 id in 66 aa;gbkey=CDS;inference=similar to sequence:INSDC:X96784;product=hypothetical protein;protein_id=CAL20517.1;transl_table=11
AL590842.1	EMBL	gene	2120994	2121209	.	-	.	ID=gene1863;Name=YPO1878;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1878
AL590842.1	EMBL	CDS	2120994	2121209	.	-	0	ID=cds1827;Parent=gene1863;Dbxref=UniProtKB/TrEMBL:Q74V21,NCBI_GP:CAL20518.1;Name=CAL20518.1;Note=No significant database matches;gbkey=CDS;product=putative membrane protein;protein_id=CAL20518.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2121123	2121188	.	-	.	ID=id4380;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2121644	2121931	.	-	.	ID=gene1864;Name=YPO1879;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1879
AL590842.1	EMBL	CDS	2121644	2121931	.	-	0	ID=cds1828;Parent=gene1864;Dbxref=UniProtKB/TrEMBL:Q7CI21,NCBI_GP:CAL20519.1;Name=CAL20519.1;Note=Weakly similar to Escherichia coli hypothetical protein YfdL SW:YFDL_ECOLI (P76508) (172 aa) fasta scores: E(): 0.076%2C 37.5%25 id in 56 aa%2C and to Caenorhabditis elegans C05E7.3 protein TR:Q17671 (EMBL:Z67879) (143 aa) fasta scores: E(): 0.98%2C 32.2%25 id in 87 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z67879;product=hypothetical protein;protein_id=CAL20519.1;transl_table=11
AL590842.1	EMBL	gene	2121948	2122247	.	-	.	ID=gene1865;Name=YPO1880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1880
AL590842.1	EMBL	CDS	2121948	2122247	.	-	0	ID=cds1829;Parent=gene1865;Dbxref=GOA:Q74V23,InterPro:IPR007048,InterPro:IPR015801,UniProtKB/TrEMBL:Q74V23,NCBI_GP:CAL20520.1;Name=CAL20520.1;Note=Similar to Bacteriophage P2 baseplate assembly protein W SW:VPW_BPP2 (P51768) (115 aa) fasta scores: E(): 2.8e-18%2C 62.2%25 id in 82 aa%2C and to Wolbachia sp. wKue Gp25 protein TR:Q9JML7 (EMBL:AB036666) (108 aa) fasta scores: E(): 3.3e-08%2C 41.1%25 id in 95 aa;gbkey=CDS;inference=similar to sequence:INSDC:AB036666;product=phage-related protein;protein_id=CAL20520.1;transl_table=11
AL590842.1	EMBL	gene	2122244	2122603	.	-	.	ID=gene1866;Name=YPO1881;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1881
AL590842.1	EMBL	CDS	2122244	2122603	.	-	0	ID=cds1830;Parent=gene1866;Dbxref=InterPro:IPR006531,InterPro:IPR013046,UniProtKB/TrEMBL:Q7CI22,NCBI_GP:CAL20521.1;Name=CAL20521.1;Note=Similar to the central regions of Bacteriophage P2 baseplate assembly protein V SW:VPV_BPP2 (P31340) (211 aa) fasta scores: E(): 4.6e-14%2C 55.4%25 id in 74 aa%2C and to Wolbachia sp. wKue Gp24 protein TR:Q9JML8 (EMBL:AB036666) (154 aa) fasta scores: E(): 3.1e-10%2C 45.1%25 id in 82 aa;gbkey=CDS;inference=similar to sequence:INSDC:AB036666;product=phage-related protein;protein_id=CAL20521.1;transl_table=11
AL590842.1	EMBL	gene	2122887	2123177	.	+	.	ID=gene1867;Name=YPO1882;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1882
AL590842.1	EMBL	CDS	2122887	2123177	.	+	0	ID=cds1831;Parent=gene1867;Dbxref=InterPro:IPR025528,UniProtKB/TrEMBL:Q7CI23,NCBI_GP:CAL20522.1;Name=CAL20522.1;Note=Similar to Neisseria meningitidis hypothetical protein NMA1326 TR:Q9JUG2 (EMBL:AL162755) (100 aa) fasta scores: E(): 8.7e-06%2C 42.2%25 id in 83 aa%2C and to Xylella fastidiosa hypothetical protein XF1563 TR:Q9PD17 (EMBL:AE003986) (112 aa) fasta scores: E(): 2.2e-05%2C 38.4%25 id in 73 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL162755;product=conserved hypothetical protein;protein_id=CAL20522.1;transl_table=11
AL590842.1	EMBL	pseudogene	2123243	2124319	.	+	.	ID=gene1868;Name=YPO1883;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO1883;pseudo=true
AL590842.1	EMBL	CDS	2123243	2124319	.	+	0	ID=cds1832;Parent=gene1868;Dbxref=PSEUDO:CAL20523.1;Note=No significant database matches. Due to the absence of an appropriate stop codon%2Cother than within the IS element%2Cthis CDS is likely to have been disrupted by the adjoining IS285 element. It is difficult to accurately predict the effect this insertion would have on protein function.;gbkey=CDS;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	repeat_region	2124296	2125600	.	+	.	ID=id4381;Note=insertion sequence:IS285;gbkey=repeat_region
AL590842.1	EMBL	pseudogene	2124367	2125565	.	+	.	ID=gene1869;Name=y1062;gbkey=Gene;gene=y1062;gene_biotype=pseudogene;gene_synonym=ypmt1.80C;locus_tag=YPO1884;pseudo=true
AL590842.1	EMBL	CDS	2124367	2125565	.	+	0	ID=cds1833;Parent=gene1869;Note=Similar to the previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 1.4e-149%2C 94.776%25 id in 402 aa%2Cand to Escherichia coli transposase-like protein TnpA TR:Q9F9X3 (EMBL:AF143819) (402 aa) fasta scores: E(): 2.8e-120%2C 74.129%25 id in 402 aa. There is a frameshift following codon 286. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=y1062;inference=similar to sequence:INSDC:AF143819;product=transposase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	2124367	2125224	.	+	.	ID=id4382;Note=Pfam match to entry PF00872 Transpo_mutator%2CTransposase%2C Mutator family%2C score 310.20%2C E-value 2.5e-89;gbkey=misc_feature;gene=y1062;inference=protein motif:PF00872
AL590842.1	EMBL	sequence_feature	2125060	2125134	.	+	.	ID=id4383;Note=PS01007 Transposases%2C Mutator family%2C signature.;gbkey=misc_feature;gene=y1062;inference=protein motif:ProSite:PS01007
AL590842.1	EMBL	sequence_feature	2125230	2125493	.	+	.	ID=id4384;Note=Pfam match to entry PF00872 Transpo_mutator%2CTransposase%2C Mutator family%2C score 93.00%2C E-value 1.3e-25;gbkey=misc_feature;gene=y1062;inference=protein motif:PF00872
AL590842.1	EMBL	gene	2125983	2126552	.	-	.	ID=gene1870;Name=YPO1886;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1886
AL590842.1	EMBL	CDS	2125983	2126552	.	-	0	ID=cds1834;Parent=gene1870;Dbxref=UniProtKB/TrEMBL:Q7CI24,NCBI_GP:CAL20525.1;Name=CAL20525.1;Note=Weak similarity to Homo sapiens cdna: flj22977 FIS%2Cclone kat11312 TR:BAB15514 (EMBL:AK026630) (233 aa) fasta scores: E(): 2.5%2C 25.9%25 id in 158 aa;gbkey=CDS;inference=similar to sequence:INSDC:AK026630;product=putative exported protein;protein_id=CAL20525.1;transl_table=11
AL590842.1	EMBL	gene	2126564	2126998	.	-	.	ID=gene1871;Name=YPO1887;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1887
AL590842.1	EMBL	CDS	2126564	2126998	.	-	0	ID=cds1835;Parent=gene1871;Dbxref=UniProtKB/TrEMBL:Q7CI25,NCBI_GP:CAL20526.1;Name=CAL20526.1;Note=Weakly similar to the C-terminal region of Canis familiaris microsomal signal peptidase 23 kDa subunit SW:SPC2_CANFA (P12280) (180 aa) fasta scores: E(): 4.5%2C28.3%25 id in 106 aa;gbkey=CDS;product=hypothetical protein;protein_id=CAL20526.1;transl_table=11
AL590842.1	EMBL	gene	2127233	2127622	.	+	.	ID=gene1872;Name=YPO1888;end_range=2127622,.;gbkey=Gene;gene_biotype=other;locus_tag=YPO1888;partial=true;start_range=.,2127233
AL590842.1	EMBL	mRNA	2127233	2127622	.	+	.	ID=rna46;Parent=gene1872;Note=Partial CDS (lacks approximately 100 amino acids at the N-terminal end). There is a stop codon at position 42. Similar to C-terminal region of Escherichia coli hypothetical 26.3 kDa protein TR:O53006 (EMBL:Y07545) (225 aa) fasta scores: E(): 0%2C 73.7%25 id in 114 aa%2C and to Vibrio cholerae putative transposase TR:Q9L987 (EMBL:AF179596) (307 aa) fasta scores: E(): 2.3e-32%2C 69.9%25 id in 113 aa%3B~was marked partial;end_range=2127622,.;gbkey=mRNA;inference=similar to sequence:INSDC:Y07545;partial=true;product=putative transposase (partial);start_range=.,2127233
AL590842.1	EMBL	exon	2127233	2127622	.	+	.	ID=id4385;Parent=rna46;Note=Partial CDS (lacks approximately 100 amino acids at the N-terminal end). There is a stop codon at position 42. Similar to C-terminal region of Escherichia coli hypothetical 26.3 kDa protein TR:O53006 (EMBL:Y07545) (225 aa) fasta scores: E(): 0%2C 73.7%25 id in 114 aa%2C and to Vibrio cholerae putative transposase TR:Q9L987 (EMBL:AF179596) (307 aa) fasta scores: E(): 2.3e-32%2C 69.9%25 id in 113 aa%3B~was marked partial;end_range=2127622,.;gbkey=mRNA;inference=similar to sequence:INSDC:Y07545;partial=true;product=putative transposase (partial);start_range=.,2127233
AL590842.1	EMBL	sequence_feature	2127416	2127580	.	+	.	ID=id4386;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 17.10%2C E-value 0.00085;gbkey=misc_feature;inference=protein motif:PF00665
AL590842.1	EMBL	gene	2127649	2127780	.	+	.	ID=gene1873;Name=YPO1889;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1889
AL590842.1	EMBL	CDS	2127649	2127780	.	+	0	ID=cds1836;Parent=gene1873;Dbxref=UniProtKB/TrEMBL:Q0WFQ9,NCBI_GP:CAL20527.1;Name=CAL20527.1;Note=Partial CDS. Similar to the N-terminal regions of Yersinia enterocolitica IS1400 transposase A Trp1400A TR:Q9X9H8 (EMBL:AJ132945) (96 aa) fasta scores: E(): 2.5e-11%2C 73.2%25 id in 41 aa%2C and to Salmonella enteritidis transposase OrfA TR:O06945 (EMBL:Z83734) (88 aa) fasta scores: E(): 3.7e-07%2C 69.7%25 id in 33 aa%3B~was marked partial;gbkey=CDS;inference=similar to sequence:INSDC:Z83734;product=putative transposase (partial);protein_id=CAL20527.1;transl_table=11
AL590842.1	EMBL	gene	2127967	2128764	.	+	.	ID=gene1874;Name=YPO1890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1890
AL590842.1	EMBL	CDS	2127967	2128764	.	+	0	ID=cds1837;Parent=gene1874;Dbxref=GOA:Q7CI26,InterPro:IPR000524,InterPro:IPR011663,InterPro:IPR011991,InterPro:IPR028978,UniProtKB/TrEMBL:Q7CI26,NCBI_GP:CAL20528.1;Name=CAL20528.1;Note=Similar to Deinococcus radiodurans GntR-family transcriptional regulator DRA0211 TR:Q9RYU6 (EMBL:AE001863) (279 aa) fasta scores: E(): 8.7e-28%2C 40.1%25 id in 232 aa%2Cand to Escherichia coli hypothetical transcriptional regulator YegW SW:YEGW_ECOLI (P76420) (248 aa) fasta scores: E(): 9.4e-18%2C 29.2%25 id in 226 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE001863;product=GntR-family putative transcriptional regulatory protein;protein_id=CAL20528.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2128087	2128251	.	+	.	ID=id4387;Note=Pfam match to entry PF00392 gntR%2C Bacterial regulatory proteins%2C gntR family%2C score 56.20%2C E-value 8.3e-16;gbkey=misc_feature;inference=protein motif:PF00392
AL590842.1	EMBL	sequence_feature	2128129	2128203	.	+	.	ID=id4388;Note=PS00043 Bacterial regulatory proteins%2C gntR family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00043
AL590842.1	EMBL	sequence_feature	2128132	2128197	.	+	.	ID=id4389;Note=Predicted helix-turn-helix motif with score 1651 (+4.81 SD) at aa 56-77%2C sequence PSERELSERLNLSRVTVRRALS;gbkey=misc_feature
AL590842.1	EMBL	gene	2128734	2129024	.	-	.	ID=gene1875;Name=YPO1891;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1891
AL590842.1	EMBL	CDS	2128734	2129024	.	-	0	ID=cds1838;Parent=gene1875;Dbxref=UniProtKB/TrEMBL:Q74V30,NCBI_GP:CAL20529.1;Name=CAL20529.1;Note=Weakly similar to the C-terminal regions of Vibrio cholerae ROK family protein Vc1782 TR:Q9KR61 (EMBL:AE004255) (287 aa) fasta scores: E(): 0.0065%2C 32.8%25 id in 64 aa%2C and to Human immunodeficiency virus type 1 envelope protein (fragment) TR:Q9PY35 (EMBL:UNNKOWN ACCESSION) (98 aa) fasta scores: E(): 2.2%2C 27.1%25 id in 70 aa;gbkey=CDS;inference=similar to sequence:UniProtKB:Q9PY35;product=hypothetical protein;protein_id=CAL20529.1;transl_table=11
AL590842.1	EMBL	gene	2129432	2130445	.	+	.	ID=gene1876;Name=YPO1892;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1892
AL590842.1	EMBL	CDS	2129432	2130445	.	+	0	ID=cds1839;Parent=gene1876;Dbxref=GOA:Q7CI27,InterPro:IPR000683,InterPro:IPR016040,UniProtKB/TrEMBL:Q7CI27,NCBI_GP:CAL20530.1;Name=CAL20530.1;Note=Similar to Methanobacterium thermoautotrophicum 3-chlorobenzoate-3%2C4-dioxygenase dyhydrogenase related protein Mth875 TR:O26961 (EMBL:AE000863) (318 aa) fasta scores: E(): 5.4e-18%2C 29.3%25 id in 335 aa%2C and to Pyrococcus abyssi NADH-dependent dehydrogenase homolog Pab0775 TR:Q9UZI3 (EMBL:AJ248286) (315 aa) fasta scores: E(): 3.9e-16%2C 26.9%25 id in 338 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ248286;product=putative oxidoreductase;protein_id=CAL20530.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2129447	2130160	.	+	.	ID=id4390;Note=Pfam match to entry PF01408 GFO_IDH_MocA%2COxidoreductase family%2C score 145.70%2C E-value 8.4e-40;gbkey=misc_feature;inference=protein motif:PF01408
AL590842.1	EMBL	gene	2130475	2131743	.	+	.	ID=gene1877;Name=YPO1893;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1893
AL590842.1	EMBL	CDS	2130475	2131743	.	+	0	ID=cds1840;Parent=gene1877;Dbxref=GOA:Q9ZC22,InterPro:IPR006059,UniProtKB/TrEMBL:Q9ZC22,NCBI_GP:CAL20531.1;Name=CAL20531.1;Note=Previously sequenced as Yersinia pestis propable sugar ABC transporter binding protein Orf83 TR:Q9ZC22 (EMBL:AL031866) (422 aa) fasta scores: E(): 0%2C 100.0%25 id in 422 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=putative exported solute-binding protein;protein_id=CAL20531.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2130862	2131728	.	+	.	ID=id4391;Note=Pfam match to entry PF01547 SBP_bacterial_1%2CBacterial extracellular solute-binding protein%2C score 158.70%2C E-value 1e-43;gbkey=misc_feature;inference=protein motif:PF01547
AL590842.1	EMBL	gene	2131810	2132670	.	+	.	ID=gene1878;Name=YPO1894;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1894
AL590842.1	EMBL	CDS	2131810	2132670	.	+	0	ID=cds1841;Parent=gene1878;Dbxref=GOA:Q9ZC23,InterPro:IPR000515,UniProtKB/TrEMBL:Q9ZC23,NCBI_GP:CAL20532.1;Name=CAL20532.1;Note=Previously sequenced as Yersinia pestis probable ABC transporter protein Orf82 (EMBL:AL031866) (286 aa) fasta scores: E(): 0%2C 100.0%25 id in 286 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative binding-protein-dependent transport system%2C inner membrane component;protein_id=CAL20532.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2131843	2131911	.	+	.	ID=id4392;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2132014	2132082	.	+	.	ID=id4393;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2132119	2132178	.	+	.	ID=id4394;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2132269	2132337	.	+	.	ID=id4395;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2132332	2132559	.	+	.	ID=id4396;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 48.80%2C E-value 1.2e-10;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	2132335	2132421	.	+	.	ID=id4397;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	2132398	2132466	.	+	.	ID=id4398;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2132572	2132640	.	+	.	ID=id4399;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2132663	2133490	.	+	.	ID=gene1879;Name=YPO1895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1895
AL590842.1	EMBL	CDS	2132663	2133490	.	+	0	ID=cds1842;Parent=gene1879;Dbxref=GOA:Q9ZC24,InterPro:IPR000515,UniProtKB/TrEMBL:Q9ZC24,NCBI_GP:CAL20533.1;Name=CAL20533.1;Note=Previously sequenced as Yersinia pestis inner membrane transport protein TR:Q9ZC24 (EMBL:AL031866) (275 aa) fasta scores: E(): 0%2C 100.0%25 id in 275 aa. Similar to Pseudomonas fluorescens probable ABC transporter permease protein MtlG TR:O30493 (EMBL:AF007800) (276 aa) fasta scores: E(): 0%2C 39.5%25 id in 258 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=putative binding-protein-dependent transport system%2C inner membrane component;protein_id=CAL20533.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2132699	2132767	.	+	.	ID=id4400;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2132891	2132959	.	+	.	ID=id4401;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2132993	2133052	.	+	.	ID=id4402;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2133080	2133148	.	+	.	ID=id4403;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2133143	2133364	.	+	.	ID=id4404;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 66.50%2C E-value 5.7e-16;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	2133146	2133232	.	+	.	ID=id4405;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	2133209	2133277	.	+	.	ID=id4406;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2133377	2133445	.	+	.	ID=id4407;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2133515	2134405	.	+	.	ID=gene1880;Name=YPO1896;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1896
AL590842.1	EMBL	CDS	2133515	2134405	.	+	0	ID=cds1843;Parent=gene1880;Dbxref=GOA:Q9ZC25,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q9ZC25,NCBI_GP:CAL20534.1;Name=CAL20534.1;Note=Previously sequenced as Yersinia pestis hypothetical protein Orf80 TR:Q9ZC25 (EMBL:AL031866) (296 aa) fasta scores: E(): 0%2C 100.0%25 id in 296 aa. Similar to Agrobacterium radiobacter lactose transport ATP-binding protein LacK SW:LACK_AGRRD (Q01937) (363 aa) fasta scores: E(): 0%2C 63.1%25 id in 263 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=putative binding-protein-dependent transport system%2C ATP-binding component;protein_id=CAL20534.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2133599	2134144	.	+	.	ID=id4408;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 197.40%2C E-value 2.2e-55;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2133620	2133643	.	+	.	ID=id4409;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	2133914	2133958	.	+	.	ID=id4410;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	2134642	2134866	.	-	.	ID=gene1881;Name=YPO1897;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1897
AL590842.1	EMBL	CDS	2134642	2134866	.	-	0	ID=cds1844;Parent=gene1881;Dbxref=UniProtKB/TrEMBL:Q7CI33,NCBI_GP:CAL20535.1;Name=CAL20535.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20535.1;transl_table=11
AL590842.1	EMBL	gene	2134882	2135067	.	-	.	ID=gene1882;Name=YPO1898;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1898
AL590842.1	EMBL	CDS	2134882	2135067	.	-	0	ID=cds1845;Parent=gene1882;Dbxref=UniProtKB/TrEMBL:Q74V39,NCBI_GP:CAL20536.1;Name=CAL20536.1;Note=Similar to Yersinia pseudotuberculosis hypothetical protein TR:Q9X9G2 (EMBL:AJ236887) (68 aa) fasta scores: E(): 1.4e-18%2C 95.9%25 id in 49 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ236887;product=conserved hypothetical protein;protein_id=CAL20536.1;transl_table=11
AL590842.1	EMBL	FLANKING	2134922	2134946	.	+	.	ID=id4411;Note=imperfect 24 bp direct repeat flanking the pathogenicity island YP-HPI;gbkey=repeat_region;rpt_type=FLANKING
AL590842.1	EMBL	sequence_feature	2134947	2171283	.	+	.	ID=id4412;Note=Pathogenicity island YP-HPI;gbkey=misc_feature
AL590842.1	EMBL	gene	2135261	2135488	.	-	.	ID=gene1883;Name=YPO1899;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1899
AL590842.1	EMBL	CDS	2135261	2135488	.	-	0	ID=cds1846;Parent=gene1883;Dbxref=UniProtKB/TrEMBL:Q74V40,NCBI_GP:CAL20537.1;Name=CAL20537.1;Note=Similar to the N-terminal region of Rattus norvegicus Fasl receptor precursor SW:FASA_RAT (Q63199) (324 aa) fasta scores: E(): 1.2%2C 30.3%25 id in 76 aa;gbkey=CDS;product=hypothetical protein;protein_id=CAL20537.1;transl_table=11
AL590842.1	EMBL	repeat_region	2135459	2137412	.	+	.	ID=id4413;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	2135459	2135486	.	+	.	ID=id4414;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	2135545	2136567	.	+	.	ID=gene1884;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO1900
AL590842.1	EMBL	CDS	2135545	2136567	.	+	0	ID=cds1847;Parent=gene1884;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL20538.1;Name=CAL20538.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL20538.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2135569	2135652	.	+	.	ID=id4415;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	sequence_feature	2135596	2135661	.	+	.	ID=id4416;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	2135890	2136423	.	+	.	ID=id4417;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	gene	2136564	2137346	.	+	.	ID=gene1885;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO1901
AL590842.1	EMBL	CDS	2136564	2137346	.	+	0	ID=cds1848;Parent=gene1885;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL20539.1;Name=CAL20539.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL20539.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2136732	2137271	.	+	.	ID=id4418;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	2136891	2136914	.	+	.	ID=id4419;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	INVERTED	2137385	2137412	.	-	.	ID=id4420;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	2137945	2138526	.	-	.	ID=gene1886;Name=YPO1902;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1902
AL590842.1	EMBL	CDS	2137945	2138526	.	-	0	ID=cds1849;Parent=gene1886;Dbxref=InterPro:IPR021364,UniProtKB/TrEMBL:Q9Z381,NCBI_GP:CAL20540.1;Name=CAL20540.1;Note=Previously sequenced as Yersinia pestis hypothetical protein ORF 77 TR:Q9Z381 (EMBL:AL031866) (193 aa) fasta scores: E(): 0%2C 100.0%25 id in 193 aa. Identical to Yersinia pseudotuberculosis hypothetical 18.9 kDa protein TR:Q9X9G3 (EMBL:AJ236887) (166 aa) fasta scores: E(): 0%2C 100.0%25 id in 166 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=hypothetical protein;protein_id=CAL20540.1;transl_table=11
AL590842.1	EMBL	gene	2138532	2138696	.	-	.	ID=gene1887;Name=YPO1903;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1903
AL590842.1	EMBL	CDS	2138532	2138696	.	-	0	ID=cds1850;Parent=gene1887;Dbxref=UniProtKB/TrEMBL:Q9ZFZ7,NCBI_GP:CAL20541.1;Name=CAL20541.1;Note=Previously sequenced as Yersinia pestis hypothetical 6.0 kDa protein TR:Q9ZFZ7 (EMBL:AF091251) (54 aa) fasta scores: E(): 1.7e-23%2C 100.0%25 id in 54 aa. Identical to Yersinia pseudotuberculosis hypothetical 6.9 kDa protein TR:Q9X9G4 (EMBL:AJ236887) (61 aa) fasta scores: E(): 1.9e-23%2C 100.0%25 id in 54 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ236887;product=hypothetical protein;protein_id=CAL20541.1;transl_table=11
AL590842.1	EMBL	gene	2138715	2138996	.	-	.	ID=gene1888;Name=YPO1904;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1904
AL590842.1	EMBL	CDS	2138715	2138996	.	-	0	ID=cds1851;Parent=gene1888;Dbxref=InterPro:IPR010260,UniProtKB/TrEMBL:Q9ZFZ8,NCBI_GP:CAL20542.1;Name=CAL20542.1;Note=Similar to the previously sequenced Yersinia pestis hypothetical 10.9 kDa protein TR:Q9ZFZ8 (EMBL:AF091251) (93 aa) fasta scores: E(): 0%2C 98.9%25 id in 93 aa. Identical to Yersinia pseudotuberculosis DNA-binding protein TR:Q9X9G5 (EMBL:AJ236887) (61 aa) fasta scores: E(): 1.6e-24%2C 100.0%25 id in 61 aa. The Y. pseudotuberculosis ORF starts at an internal methionine (codon 33);gbkey=CDS;inference=similar to sequence:INSDC:AJ236887;product=putative transcriptional regulator;protein_id=CAL20542.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2138817	2138882	.	-	.	ID=id4421;Note=Predicted helix-turn-helix motif with score 1251 (+3.45 SD) at aa 39-60%2C sequence LRLRQVEQKTGLKRSQIYLYMK;gbkey=misc_feature
AL590842.1	EMBL	gene	2139040	2139594	.	-	.	ID=gene1889;Name=YPO1905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1905
AL590842.1	EMBL	CDS	2139040	2139594	.	-	0	ID=cds1852;Parent=gene1889;Dbxref=UniProtKB/TrEMBL:Q9ZFZ9,NCBI_GP:CAL20543.1;Name=CAL20543.1;Note=Similar to the previously sequenced Yersinia pestis hypothetical 21.1 kDa protein TR:Q9ZFZ9 (EMBL:AF091251) (184 aa) fasta scores: E(): 0%2C 99.5%25 id in 184 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF091251;product=hypothetical protein;protein_id=CAL20543.1;transl_table=11
AL590842.1	EMBL	gene	2139602	2139967	.	-	.	ID=gene1890;Name=YPO1905a;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1905a
AL590842.1	EMBL	CDS	2139602	2139967	.	-	0	ID=cds1853;Parent=gene1890;Dbxref=UniProtKB/TrEMBL:Q7ARM9,NCBI_GP:CAL20544.1;Name=CAL20544.1;Note=Previously sequenced as Yersinia pestis hypothetical 14.8 kDa protein TR:Q9ZG00 (EMBL:AF091251) (128 aa) fasta scores: E(): 0%2C 100.0%25 id in 121 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF091251;product=hypothetical protein;protein_id=CAL20544.1;transl_table=11
AL590842.1	EMBL	gene	2140840	2142861	.	-	.	ID=gene1891;Name=fyuA;gbkey=Gene;gene=fyuA;gene_biotype=protein_coding;gene_synonym=psn;locus_tag=YPO1906
AL590842.1	EMBL	CDS	2140840	2142861	.	-	0	ID=cds1854;Parent=gene1891;Dbxref=GOA:P46359,InterPro:IPR000531,InterPro:IPR010105,InterPro:IPR012910,PDB:4EPA,NCBI_GP:CAL20545.1;Name=CAL20545.1;Note=Similar to the previously sequenced Yersinia pestis pesticin receptor protein FyuA or Psn SW:FYUA_YERPE (P46359) (673 aa) fasta scores: E(): 0%2C 99.7%25 id in 673 aa%2Cand to Yersinia pseudotuberculosis%2C and Escherichia coli FyuA precursor TR:Q57303 (EMBL:Z35107) (673 aa) fasta scores: E(): 0%2C 99.9%25 id in 673 aa;gbkey=CDS;gene=fyuA;inference=similar to sequence:INSDC:Z35107;product=pesticin/yersiniabactin receptor protein;protein_id=CAL20545.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2140846	2141172	.	-	.	ID=id4422;Note=Pfam match to entry PF00593 TonB_boxC%2C TonB dependent receptor C-terminal region%2C score 69.40%2C E-value 6.4e-18;gbkey=misc_feature;gene=fyuA;inference=protein motif:PF00593
AL590842.1	EMBL	gene	2142992	2144569	.	-	.	ID=gene1892;Name=irp5;gbkey=Gene;gene=irp5;gene_biotype=protein_coding;gene_synonym=ybtE;locus_tag=YPO1907
AL590842.1	EMBL	CDS	2142992	2144569	.	-	0	ID=cds1855;Parent=gene1892;Dbxref=GOA:Q56950,InterPro:IPR000873,InterPro:IPR020845,InterPro:IPR025110,UniProtKB/TrEMBL:Q56950,NCBI_GP:CAL20546.1;Name=CAL20546.1;Note=Previously sequenced: Yersinia pestis yersiniabactin siderophore biosynthetic protein YbtE TR:Q56950 (EMBL:U50364) (525 aa) fasta scores: E(): 0%2C 100.0%25 id in 525 aa. Similar to Yersinia enterocolitica Irp5 protein TR:O54514 (EMBL:Y12527) (525 aa) fasta scores: E(): 0%2C97.9%25 id in 525 aa;gbkey=CDS;gene=irp5;inference=similar to sequence:INSDC:Y12527;product=yersiniabactin siderophore biosynthetic protein;protein_id=CAL20546.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2143229	2144449	.	-	.	ID=id4423;Note=Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%2C score 20.20%2C E-value 1.5e-16;gbkey=misc_feature;gene=irp5;inference=protein motif:PF00501
AL590842.1	EMBL	sequence_feature	2143346	2143387	.	-	.	ID=id4424;Note=PS00761 Signal peptidases I signature 3.;gbkey=misc_feature;gene=irp5;inference=protein motif:ProSite:PS00761
AL590842.1	EMBL	sequence_feature	2143919	2143984	.	-	.	ID=id4425;Note=Predicted helix-turn-helix motif with score 1075 (+2.85 SD) at aa 196-217%2C sequence YNFSASAELCGISQQSVYLAVL;gbkey=misc_feature;gene=irp5
AL590842.1	EMBL	sequence_feature	2144015	2144050	.	-	.	ID=id4426;Note=PS00455 Putative AMP-binding domain signature.;gbkey=misc_feature;gene=irp5;inference=protein motif:ProSite:PS00455
AL590842.1	EMBL	gene	2144573	2145376	.	-	.	ID=gene1893;Name=irp4;gbkey=Gene;gene=irp4;gene_biotype=protein_coding;gene_synonym=ybtT;locus_tag=YPO1908
AL590842.1	EMBL	CDS	2144573	2145376	.	-	0	ID=cds1856;Parent=gene1893;Dbxref=GOA:Q56949,InterPro:IPR001031,InterPro:IPR012223,InterPro:IPR029058,UniProtKB/TrEMBL:Q56949,NCBI_GP:CAL20547.1;Name=CAL20547.1;Note=Similar to the previously sequenced Yersinia pestis yersiniabactin biosynthetic protein YbtT TR:Q56949 (EMBL:U50364) (267 aa) fasta scores: E(): 0%2C 99.6%25 id in 267 aa%2C and to Yersinia enterocolitica Irp4 protein TR:O54513 (EMBL:Y12527) (267 aa) fasta scores: E(): 0%2C95.5%25 id in 267 aa;gbkey=CDS;gene=irp4;inference=similar to sequence:INSDC:Y12527;product=yersiniabactin biosynthetic protein YbtT;protein_id=CAL20547.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2144621	2145322	.	-	.	ID=id4427;Note=Pfam match to entry PF00975 Thioesterase%2CThioesterase domain%2C score 266.50%2C E-value 3.4e-76;gbkey=misc_feature;gene=irp4;inference=protein motif:PF00975
AL590842.1	EMBL	sequence_feature	2145092	2145124	.	-	.	ID=id4428;Note=PS00435 Peroxidases proximal heme-ligand signature.;gbkey=misc_feature;gene=irp4;inference=protein motif:ProSite:PS00435
AL590842.1	EMBL	gene	2145373	2146473	.	-	.	ID=gene1894;Name=irp3;gbkey=Gene;gene=irp3;gene_biotype=protein_coding;gene_synonym=ybtU;locus_tag=YPO1909
AL590842.1	EMBL	CDS	2145373	2146473	.	-	0	ID=cds1857;Parent=gene1894;Dbxref=GOA:Q0WFN8,InterPro:IPR000683,InterPro:IPR010091,InterPro:IPR016040,UniProtKB/TrEMBL:Q0WFN8,NCBI_GP:CAL20548.1;Name=CAL20548.1;Note=Previously sequenced as Yersinia pestis yersiniabactin biosynthetic protein YbtU TR:Q9Z3C6 (EMBL:AL031866) (365 aa) fasta scores: E(): 0%2C 100.0%25 id in 365 aa. Similar to Yersinia enterocolitica Irp3 protein TR:O54512 (EMBL:Y12527) (365 aa) fasta scores: E(): 0%2C97.8%25 id in 365 aa;gbkey=CDS;gene=irp3;inference=similar to sequence:INSDC:Y12527;product=yersiniabactin biosynthetic protein YbtU;protein_id=CAL20548.1;transl_table=11
AL590842.1	EMBL	gene	2146470	2155961	.	-	.	ID=gene1895;Name=irp1;gbkey=Gene;gene=irp1;gene_biotype=protein_coding;locus_tag=YPO1910
AL590842.1	EMBL	CDS	2146470	2155961	.	-	0	ID=cds1858;Parent=gene1895;Dbxref=GOA:Q9Z373,InterPro:IPR001031,InterPro:IPR001227,InterPro:IPR001242,InterPro:IPR002198,InterPro:IPR006162,InterPro:IPR009081,InterPro:IPR013217,InterPro:IPR013624,InterPro:IPR014030,InterPro:IPR014031,InterPro:IPR014043,InterPro:IPR016035,InterPro:IPR016036,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR016040,InterPro:IPR018201,InterPro:IPR020801,InterPro:IPR020842,InterPro:IPR029058,InterPro:IPR029063,UniProtKB/TrEMBL:Q9Z373,NCBI_GP:CAL20549.1;Name=CAL20549.1;Note=Previously sequenced as Yersinia pestis yersiniabactin biosynthetic protein Irp1 TR:Q9Z373 (EMBL:AL031866) (3163 aa) fasta scores: E(): 0%2C 100.0%25 id in 3163 aa. Similar to Yersinia enterocolitica HMWP1 protein Irp1 TR:O54511 (EMBL:Y12527) (3161 aa) fasta scores: E(): 0%2C 97.9%25 id in 3163 aa;gbkey=CDS;gene=irp1;inference=similar to sequence:INSDC:Y12527;product=yersiniabactin biosynthetic protein;protein_id=CAL20549.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2146506	2147222	.	-	.	ID=id4429;Note=Pfam match to entry PF00975 Thioesterase%2CThioesterase domain%2C score 58.50%2C E-value 1.5e-13;gbkey=misc_feature;gene=irp1;inference=protein motif:PF00975
AL590842.1	EMBL	sequence_feature	2147280	2147471	.	-	.	ID=id4430;Note=Pfam match to entry PF00550 pp-binding%2CPhosphopantetheine attachment site%2C score 46.90%2C E-value 2.4e-11;gbkey=misc_feature;gene=irp1;inference=protein motif:PF00550
AL590842.1	EMBL	sequence_feature	2147358	2147405	.	-	.	ID=id4431;Note=PS00012 Phosphopantetheine attachment site.;gbkey=misc_feature;gene=irp1;inference=protein motif:ProSite:PS00012
AL590842.1	EMBL	sequence_feature	2149332	2150228	.	-	.	ID=id4432;Note=Pfam match to entry PF00668 DUF4%2C Domain of unknown function DUF4%2C score 107.90%2C E-value 4.4e-30;gbkey=misc_feature;gene=irp1;inference=protein motif:PF00668
AL590842.1	EMBL	sequence_feature	2150295	2150498	.	-	.	ID=id4433;Note=Pfam match to entry PF00550 pp-binding%2CPhosphopantetheine attachment site%2C score 24.40%2C E-value 4.1e-05;gbkey=misc_feature;gene=irp1;inference=protein motif:PF00550
AL590842.1	EMBL	sequence_feature	2150373	2150420	.	-	.	ID=id4434;Note=PS00012 Phosphopantetheine attachment site.;gbkey=misc_feature;gene=irp1;inference=protein motif:ProSite:PS00012
AL590842.1	EMBL	sequence_feature	2153370	2154314	.	-	.	ID=id4435;Note=Pfam match to entry PF00698 Acyl_transf%2C Acyl transferase domain%2C score 206.60%2C E-value 3.9e-58;gbkey=misc_feature;gene=irp1;inference=protein motif:PF00698
AL590842.1	EMBL	sequence_feature	2154609	2155877	.	-	.	ID=id4436;Note=Pfam match to entry PF00109 ketoacyl-synt%2CBeta-ketoacyl synthase%2C score 576.50%2C E-value 1.6e-169;gbkey=misc_feature;gene=irp1;inference=protein motif:PF00109
AL590842.1	EMBL	sequence_feature	2155131	2155187	.	-	.	ID=id4437;Note=PS00095 C-5 cytosine-specific DNA methylases C-terminal signature.;gbkey=misc_feature;gene=irp1;inference=protein motif:ProSite:PS00095
AL590842.1	EMBL	sequence_feature	2155347	2155397	.	-	.	ID=id4438;Note=PS00606 Beta-ketoacyl synthases active site.;gbkey=misc_feature;gene=irp1;inference=protein motif:ProSite:PS00606
AL590842.1	EMBL	gene	2156049	2162156	.	-	.	ID=gene1896;Name=irp2;gbkey=Gene;gene=irp2;gene_biotype=protein_coding;locus_tag=YPO1911
AL590842.1	EMBL	CDS	2156049	2162156	.	-	0	ID=cds1859;Parent=gene1896;Dbxref=GOA:Q7CI41,InterPro:IPR000873,InterPro:IPR001242,InterPro:IPR006162,InterPro:IPR009081,InterPro:IPR010071,InterPro:IPR013217,InterPro:IPR013624,InterPro:IPR020845,InterPro:IPR025110,InterPro:IPR029063,UniProtKB/TrEMBL:Q7CI41,NCBI_GP:CAL20550.1;Name=CAL20550.1;Note=Previously sequenced as Yersinia pestis yersiniabactin biosynthetic protein Irp2 TR:Q9Z399 (EMBL:AL031866) (2041 aa) fasta scores: E(): 0%2C 100.0%25 id in 2035 aa. Similar to Yersinia enterocolitica high-molecular-weight protein 2 Irp2 SW:HMP2_YEREN (P48633) (2035 aa) fasta scores: E(): 0%2C 98.6%25 id in 2035 aa. The previously sequenced Yersinia pestis Irp2 ORF starts at a valine situated 6 aa upstream from the methionine. However%2Cthe methionine start%2C has a good ribosome-binding site;gbkey=CDS;gene=irp2;inference=similar to sequence:INSDC:AL031866;product=yersiniabactin biosynthetic protein;protein_id=CAL20550.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2156118	2156309	.	-	.	ID=id4439;Note=Pfam match to entry PF00550 pp-binding%2CPhosphopantetheine attachment site%2C score 23.60%2C E-value 6.9e-05;gbkey=misc_feature;gene=irp2;inference=protein motif:PF00550
AL590842.1	EMBL	sequence_feature	2156811	2157683	.	-	.	ID=id4440;Note=Pfam match to entry PF00668 DUF4%2C Domain of unknown function DUF4%2C score 257.90%2C E-value 1.4e-73;gbkey=misc_feature;gene=irp2;inference=protein motif:PF00668
AL590842.1	EMBL	sequence_feature	2157735	2157926	.	-	.	ID=id4441;Note=Pfam match to entry PF00550 pp-binding%2CPhosphopantetheine attachment site%2C score 40.40%2C E-value 1.5e-09;gbkey=misc_feature;gene=irp2;inference=protein motif:PF00550
AL590842.1	EMBL	sequence_feature	2159187	2160380	.	-	.	ID=id4442;Note=Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%2C score 518.00%2C E-value 6.9e-152;gbkey=misc_feature;gene=irp2;inference=protein motif:PF00501
AL590842.1	EMBL	sequence_feature	2159997	2160032	.	-	.	ID=id4443;Note=PS00455 Putative AMP-binding domain signature.;gbkey=misc_feature;gene=irp2;inference=protein motif:ProSite:PS00455
AL590842.1	EMBL	sequence_feature	2160870	2160893	.	-	.	ID=id4444;Note=PS00256 Adipokinetic hormone family signature.;gbkey=misc_feature;gene=irp2;inference=protein motif:ProSite:PS00256
AL590842.1	EMBL	sequence_feature	2160927	2161826	.	-	.	ID=id4445;Note=Pfam match to entry PF00668 DUF4%2C Domain of unknown function DUF4%2C score 262.20%2C E-value 6.8e-75;gbkey=misc_feature;gene=irp2;inference=protein motif:PF00668
AL590842.1	EMBL	sequence_feature	2161896	2162093	.	-	.	ID=id4446;Note=Pfam match to entry PF00550 pp-binding%2CPhosphopantetheine attachment site%2C score 13.80%2C E-value 0.035;gbkey=misc_feature;gene=irp2;inference=protein motif:PF00550
AL590842.1	EMBL	sequence_feature	2161971	2162018	.	-	.	ID=id4447;Note=PS00012 Phosphopantetheine attachment site.;gbkey=misc_feature;gene=irp2;inference=protein motif:ProSite:PS00012
AL590842.1	EMBL	gene	2162347	2163306	.	-	.	ID=gene1897;Name=ybtA;gbkey=Gene;gene=ybtA;gene_biotype=protein_coding;locus_tag=YPO1912
AL590842.1	EMBL	CDS	2162347	2163306	.	-	0	ID=cds1860;Parent=gene1897;Dbxref=GOA:Q56951,InterPro:IPR009057,InterPro:IPR018060,InterPro:IPR018062,InterPro:IPR020449,UniProtKB/TrEMBL:Q56951,NCBI_GP:CAL20551.1;Name=CAL20551.1;Note=Previously sequenced as Yersinia pestis yersiniabactin transcriptional regulator YbtA TR:Q56951 (EMBL:U50452) (319 aa) fasta scores: E(): 0%2C 100.0%25 id in 319 aa. Similar to Yersinia enterocolitica yersiniabactin transcriptional regulator YbtA TR:Q9X9I4 (EMBL:AJ132668) (319 aa) fasta scores: E(): 0%2C 99.1%25 id in 319 aa;gbkey=CDS;gene=ybtA;inference=similar to sequence:INSDC:U50452;product=transcriptional regulator YbtA;protein_id=CAL20551.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2162350	2162610	.	-	.	ID=id4448;Note=Pfam match to entry PF00165 HTH_AraC%2C Bacterial regulatory helix-turn-helix proteins%2C araC family%2C score 41.30%2C E-value 2.2e-08;gbkey=misc_feature;gene=ybtA;inference=protein motif:PF00165
AL590842.1	EMBL	sequence_feature	2162371	2162499	.	-	.	ID=id4449;Note=PS00041 Bacterial regulatory proteins%2C araC family signature.;gbkey=misc_feature;gene=ybtA;inference=protein motif:ProSite:PS00041
AL590842.1	EMBL	gene	2163473	2165275	.	+	.	ID=gene1898;Name=irp6;gbkey=Gene;gene=irp6;gene_biotype=protein_coding;gene_synonym=ybtP;locus_tag=YPO1913
AL590842.1	EMBL	CDS	2163473	2165275	.	+	0	ID=cds1861;Parent=gene1898;Dbxref=GOA:Q9R7V3,InterPro:IPR001140,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR011527,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q9R7V3,NCBI_GP:CAL20552.1;Name=CAL20552.1;Note=Previously sequenced as Yersinia pestis lipoprotein inner membrane ABC-transporter YbtP TR:Q9R7V3 (EMBL:AL031866) (600 aa) fasta scores: E(): 0%2C 100.0%25 id in 600 aa. Similar to Yersinia enterocolitica lipoprotein inner membrane ABC-transporter Irp6 TR:Q9X9I5 (EMBL:AJ132668) (600 aa) fasta scores: E(): 0%2C 98.0%25 id in 600 aa;gbkey=CDS;gene=irp6;inference=similar to sequence:INSDC:AL031866;product=lipoprotein inner membrane ABC-transporter;protein_id=CAL20552.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2163542	2164369	.	+	.	ID=id4450;Note=Pfam match to entry PF00664 ABC_membrane%2C ABC transporter transmembrane region.%2C score 63.20%2C E-value 5.5e-15;gbkey=misc_feature;gene=irp6;inference=protein motif:PF00664
AL590842.1	EMBL	sequence_feature	2163557	2163625	.	+	.	ID=id4451;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=irp6;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2163653	2163712	.	+	.	ID=id4452;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=irp6;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2163899	2163958	.	+	.	ID=id4453;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=irp6;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2163968	2164024	.	+	.	ID=id4454;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=irp6;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2164223	2164291	.	+	.	ID=id4455;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=irp6;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2164319	2164387	.	+	.	ID=id4456;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=irp6;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2164580	2165134	.	+	.	ID=id4457;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 192.50%2C E-value 6.7e-54;gbkey=misc_feature;gene=irp6;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2164601	2164624	.	+	.	ID=id4458;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=irp6;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	2164913	2164957	.	+	.	ID=id4459;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=irp6;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	2165262	2167064	.	+	.	ID=gene1899;Name=irp7;gbkey=Gene;gene=irp7;gene_biotype=protein_coding;gene_synonym=ybtQ;locus_tag=YPO1914
AL590842.1	EMBL	CDS	2165262	2167064	.	+	0	ID=cds1862;Parent=gene1899;Dbxref=GOA:Q9Z375,InterPro:IPR001140,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR011527,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q9Z375,NCBI_GP:CAL20553.1;Name=CAL20553.1;Note=Previously sequenced as Yersinia pestis inner membrane ABC-transporter YbtQ TR:Q9Z375 (EMBL:AL031866) (600 aa) fasta scores: E(): 0%2C 100.0%25 id in 600 aa. Similar to Yersinia enterocolitica inner membrane ABC-transporter Irp7 TR:Q9X9I6 (EMBL:AJ132668) (600 aa) fasta scores: E(): 0%2C 98.8%25 id in 600 aa;gbkey=CDS;gene=irp7;inference=similar to sequence:INSDC:AL031866;product=inner membrane ABC-transporter YbtQ;protein_id=CAL20553.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2165361	2165429	.	+	.	ID=id4460;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=irp7;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2165379	2165411	.	+	.	ID=id4461;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=irp7;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	2165457	2165525	.	+	.	ID=id4462;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=irp7;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2165676	2165744	.	+	.	ID=id4463;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=irp7;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2165754	2165822	.	+	.	ID=id4464;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=irp7;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2166078	2166146	.	+	.	ID=id4465;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=irp7;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2166372	2166926	.	+	.	ID=id4466;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 188.40%2C E-value 1.1e-52;gbkey=misc_feature;gene=irp7;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2166393	2166416	.	+	.	ID=id4467;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=irp7;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	2166705	2166749	.	+	.	ID=id4468;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=irp7;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	2167057	2168337	.	+	.	ID=gene1900;Name=irp8;gbkey=Gene;gene=irp8;gene_biotype=protein_coding;gene_synonym=ybtX;locus_tag=YPO1915
AL590842.1	EMBL	CDS	2167057	2168337	.	+	0	ID=cds1863;Parent=gene1900;Dbxref=GOA:Q0WFN2,InterPro:IPR011701,InterPro:IPR016196,UniProtKB/TrEMBL:Q0WFN2,NCBI_GP:CAL20554.1;Name=CAL20554.1;Note=Previously sequenced as Yersinia pestis putative signal transducer YbtX TR:Q9ZC28 (EMBL:AL031866) (462 aa) fasta scores: E(): 0%2C 100.0%25 id in 426 aa. similar to Yersinia enterocolitica signal transducer Irp8 TR:Q9X9I7 (EMBL:AJ132668) (462 aa) fasta scores: E(): 0%2C 98.1%25 id in 426 aa. There is a discrepancy with the start codon. The previously sequenced Y.pestis and Y. enterocolitica ORFs start at a methionine 36 aa upstream of the predicted start for this CDS. The selection for the alternative downstream methionine start codon for this CDS was supported by Y. pestis codon usage and the presence of a good ribosome binding site;gbkey=CDS;gene=irp8;inference=similar to sequence:INSDC:AL031866;product=putative signal transducer;protein_id=CAL20554.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2167093	2167152	.	+	.	ID=id4469;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=irp8;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2167195	2167263	.	+	.	ID=id4470;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=irp8;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2167324	2167392	.	+	.	ID=id4471;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=irp8;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2167420	2167488	.	+	.	ID=id4472;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=irp8;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2167525	2167593	.	+	.	ID=id4473;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=irp8;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2167606	2167674	.	+	.	ID=id4474;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=irp8;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2167762	2167830	.	+	.	ID=id4475;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=irp8;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2167858	2167926	.	+	.	ID=id4476;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=irp8;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2167945	2168013	.	+	.	ID=id4477;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=irp8;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2168053	2168085	.	+	.	ID=id4478;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=irp8;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	2168056	2168124	.	+	.	ID=id4479;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=irp8;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2168143	2168211	.	+	.	ID=id4480;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=irp8;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2168224	2168292	.	+	.	ID=id4481;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=irp8;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2168365	2169669	.	+	.	ID=gene1901;Name=irp9;gbkey=Gene;gene=irp9;gene_biotype=protein_coding;gene_synonym=ybtS;locus_tag=YPO1916
AL590842.1	EMBL	CDS	2168365	2169669	.	+	0	ID=cds1864;Parent=gene1901;Dbxref=GOA:Q9Z396,InterPro:IPR005801,InterPro:IPR015890,InterPro:IPR019996,UniProtKB/TrEMBL:Q9Z396,NCBI_GP:CAL20555.1;Name=CAL20555.1;Note=Previously sequenced as Yersinia pestis putative salicylate synthetase YbtS TR:Q9Z396 (EMBL:AL031866) (434 aa) fasta scores: E(): 0%2C 100.0%25 id in 434 aa. Similar to Yersinia enterocolitica salicylate synthetase Irp9 TR:Q9X9I8 (EMBL:AJ132668) (434 aa) fasta scores: E(): 0%2C99.3%25 id in 434 aa;gbkey=CDS;gene=irp9;inference=similar to sequence:INSDC:AL031866;product=putative salicylate synthetase;protein_id=CAL20555.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2169076	2169660	.	+	.	ID=id4482;Note=Pfam match to entry PF00425 chorismate_bind%2Cchorismate binding enzyme%2C score 158.30%2C E-value 5e-45;gbkey=misc_feature;gene=irp9;inference=protein motif:PF00425
AL590842.1	EMBL	gene	2169863	2171125	.	-	.	ID=gene1902;Name=int;gbkey=Gene;gene=int;gene_biotype=protein_coding;locus_tag=YPO1917
AL590842.1	EMBL	CDS	2169863	2171125	.	-	0	ID=cds1865;Parent=gene1902;Dbxref=GOA:Q9Z3B4,InterPro:IPR002104,InterPro:IPR011010,InterPro:IPR013762,InterPro:IPR023109,InterPro:IPR025166,PDB:3JTZ,PDB:3RMP,UniProtKB/TrEMBL:Q9Z3B4,NCBI_GP:CAL20556.1;Name=CAL20556.1;Note=Previously sequenced Yersinia pestis integrase Int TR:Q9Z3B4 (EMBL:AL031866) (420 aa) fasta scores: E(): 0%2C100.0%25 id in 420 aa. Similar to Yersinia pseudotuberculosis integrase Int TR:Q9ZEX4 (EMBL:AJ009592) (420 aa) fasta scores: E(): 0%2C 99.8%25 id in 420 aa;gbkey=CDS;gene=int;inference=similar to sequence:INSDC:AL031866;product=integrase;protein_id=CAL20556.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2169959	2170534	.	-	.	ID=id4483;Note=Pfam match to entry PF00589 Phage_integrase%2C Phage integrase family%2C score 140.90%2C E-value 2.3e-38;gbkey=misc_feature;gene=int;inference=protein motif:PF00589
AL590842.1	EMBL	FLANKING	2171284	2171307	.	+	.	ID=id4484;Note=imperfect 24 bp direct repeat flanking the pathogenicity island YP-HPI;gbkey=repeat_region;rpt_type=FLANKING
AL590842.1	EMBL	tRNA	2171287	2171362	.	-	.	ID=rna47;Note=tRNA Asn anticodon GTT%2C Cove score 87.13;gbkey=tRNA;product=tRNA-Asn
AL590842.1	EMBL	exon	2171287	2171362	.	-	.	ID=id4485;Parent=rna47;Note=tRNA Asn anticodon GTT%2C Cove score 87.13;gbkey=tRNA;product=tRNA-Asn
AL590842.1	EMBL	gene	2171665	2172405	.	-	.	ID=gene1903;Name=YPO1918;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1918
AL590842.1	EMBL	CDS	2171665	2172405	.	-	0	ID=cds1866;Parent=gene1903;Dbxref=GOA:Q9Z394,InterPro:IPR001829,InterPro:IPR008962,InterPro:IPR016147,InterPro:IPR016148,InterPro:IPR018046,UniProtKB/TrEMBL:Q9Z394,NCBI_GP:CAL20557.1;Name=CAL20557.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9Z394 (EMBL:AL031866) (246 aa) fasta scores: E(): 0%2C 100.0%25 id in 246 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=probable pili assembly chaperone;protein_id=CAL20557.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2171860	2172330	.	-	.	ID=id4486;Note=Pfam match to entry PF00345 pili_assembly%2CGram-negative pili assembly chaperone%2C score 169.20%2CE-value 5.8e-49;gbkey=misc_feature;inference=protein motif:PF00345
AL590842.1	EMBL	gene	2172402	2173751	.	-	.	ID=gene1904;Name=YPO1919;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1919
AL590842.1	EMBL	CDS	2172402	2173751	.	-	0	ID=cds1867;Parent=gene1904;Dbxref=GOA:Q9ZC29,InterPro:IPR000259,InterPro:IPR008966,InterPro:IPR011228,UniProtKB/TrEMBL:Q9ZC29,NCBI_GP:CAL20558.1;Name=CAL20558.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC29 (EMBL:AL031866) (449 aa) fasta scores: E(): 0%2C 100.0%25 id in 449 aa. Similar to Pseudomonas aeruginosa hypothetical protein PA2131 TR:AAG05519 (EMBL:AE004640) (453 aa) fasta scores: E(): 1.1e-28%2C 34.1%25 id in 422 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=putative exported protein;protein_id=CAL20558.1;transl_table=11
AL590842.1	EMBL	gene	2173767	2176358	.	-	.	ID=gene1905;Name=YPO1920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1920
AL590842.1	EMBL	CDS	2173767	2176358	.	-	0	ID=cds1868;Parent=gene1905;Dbxref=GOA:Q9ZC30,InterPro:IPR000015,InterPro:IPR025885,InterPro:IPR025949,UniProtKB/TrEMBL:Q9ZC30,NCBI_GP:CAL20559.1;Name=CAL20559.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC30 (EMBL:AL031866) (863 aa) fasta scores: E(): 0%2C 99.9%25 id in 863 aa. Similar to Escherichia coli outer membrane usher protein FocD precursor SW:FOCD_ECOLI (P46009) (875 aa) fasta scores: E(): 0%2C 29.8%25 id in 857 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=probable fimbrial usher protein;protein_id=CAL20559.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2173833	2176265	.	-	.	ID=id4487;Note=Pfam match to entry PF00577 Usher%2C Fimbrial Usher proteins%2C score 1200.90%2C E-value 0;gbkey=misc_feature;inference=protein motif:PF00577
AL590842.1	EMBL	gene	2176407	2177051	.	-	.	ID=gene1906;Name=YPO1921;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1921
AL590842.1	EMBL	CDS	2176407	2177051	.	-	0	ID=cds1869;Parent=gene1906;Dbxref=GOA:Q9ZC31,InterPro:IPR001829,InterPro:IPR008962,InterPro:IPR016147,InterPro:IPR016148,UniProtKB/TrEMBL:Q9ZC31,NCBI_GP:CAL20560.1;Name=CAL20560.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC31 (EMBL:AL031866) (214 aa) fasta scores: E(): 0%2C 100.0%25 id in 214 aa. Similar to Haemophilus influenzae chaperone protein HifB precursor SW:HFB2_HAEIN (P45991) (241 aa) fasta scores: E(): 3.1e-16%2C 30.7%25 id in 228 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=probable pili assembly chaperone;protein_id=CAL20560.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2176437	2176637	.	-	.	ID=id4488;Note=Pfam match to entry PF00345 pili_assembly%2CGram-negative pili assembly chaperone%2C score 25.90%2C E-value 1.2e-06;gbkey=misc_feature;inference=protein motif:PF00345
AL590842.1	EMBL	sequence_feature	2176680	2176958	.	-	.	ID=id4489;Note=Pfam match to entry PF00345 pili_assembly%2CGram-negative pili assembly chaperone%2C score 118.70%2CE-value 4.6e-34;gbkey=misc_feature;inference=protein motif:PF00345
AL590842.1	EMBL	gene	2177144	2177674	.	-	.	ID=gene1907;Name=YPO1922;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1922
AL590842.1	EMBL	CDS	2177144	2177674	.	-	0	ID=cds1870;Parent=gene1907;Dbxref=GOA:Q9ZC32,InterPro:IPR000259,InterPro:IPR008966,UniProtKB/TrEMBL:Q9ZC32,NCBI_GP:CAL20561.1;Name=CAL20561.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC32 (EMBL:AL031866) (176 aa) fasta scores: E(): 0%2C 100.0%25 id in 176 aa. Similar to Escherichia coli pilin precursor TR:Q57228 (EMBL:L43373) (181 aa) fasta scores: E(): 1e-11%2C 37.9%25 id in 177 aa. Similar to YPO3877 (46.5%25 identity in 127 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:L43373;product=fimbrial protein;protein_id=CAL20561.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2177147	2177605	.	-	.	ID=id4490;Note=Pfam match to entry PF00419 Fimbrial%2C Fimbrial proteins%2C score 63.60%2C E-value 4.3e-15;gbkey=misc_feature;inference=protein motif:PF00419
AL590842.1	EMBL	pseudogene	2178187	2181914	.	-	.	ID=gene1908;Name=YPO1923;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO1923;pseudo=true
AL590842.1	EMBL	CDS	2178187	2181914	.	-	0	ID=cds1871;Parent=gene1908;Note=Similar to Bordetella parapertussis virulence sensor protein BvgS precursor SW:BVGS_BORPA (P40330) (1238 aa) fasta scores: E(): 0%2C 28.9%25 id in 1223 aa%2C and to Bordetella pertussis virulence sensor protein BvgS precursor SW:BVGS_BORPE (P16575) (1238 aa) fasta scores: E(): 0%2C 29.8%25 id in 1156 aa. Identical over its N-terminal and C-terminal regions to the previously sequenced Yersinia pestis proteins TR:Q9ZC34 and TR:Q9ZC33%2C respectively. There is a possible frameshift after codon 419. The sequence has been checked and is believed to be correct;gbkey=CDS;product=putative sensor protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	2178739	2179083	.	-	.	ID=id4491;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 126.00%2C E-value 6.8e-34;gbkey=misc_feature;inference=protein motif:PF00072
AL590842.1	EMBL	sequence_feature	2179168	2179812	.	-	.	ID=id4492;Note=Pfam match to entry PF00512 signal%2C Histidine kinase%2C score 209.90%2C E-value 3.9e-59;gbkey=misc_feature;inference=protein motif:PF00512
AL590842.1	EMBL	sequence_feature	2180278	2180343	.	-	.	ID=id4493;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2182012	2182644	.	-	.	ID=gene1909;Name=YPO1925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1925
AL590842.1	EMBL	CDS	2182012	2182644	.	-	0	ID=cds1872;Parent=gene1909;Dbxref=GOA:Q9ZC35,InterPro:IPR000792,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:Q9ZC35,NCBI_GP:CAL20563.1;Name=CAL20563.1;Note=Previously sequenced as Yersinia pestis protein TR:Q9ZC35 (EMBL:AL031866) (210 aa) fasta scores: E(): 0%2C100.0%25 id in 210 aa. Similar to Bordetella pertussis putative positive transcription regulator BvgA SW:BVGA_BORPE (P16574) (209 aa) fasta scores: E(): 2.7e-28%2C40.2%25 id in 209 aa%2C and to Escherichia coli fimbriae Z protein FimZ SW:FIMZ_ECOLI (P21502) (210 aa) fasta scores: E(): 0%2C 48.3%25 id in 207 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=putative two-component response regulator;protein_id=CAL20563.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2182015	2182206	.	-	.	ID=id4494;Note=Pfam match to entry PF00196 GerE%2C Bacterial regulatory proteins%2C luxR family%2C score 84.90%2C E-value 1.6e-21;gbkey=misc_feature;inference=protein motif:PF00196
AL590842.1	EMBL	sequence_feature	2182072	2182155	.	-	.	ID=id4495;Note=PS00622 Bacterial regulatory proteins%2C luxR family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00622
AL590842.1	EMBL	sequence_feature	2182087	2182152	.	-	.	ID=id4496;Note=Predicted helix-turn-helix motif with score 1245 (+3.43 SD) at aa 165-186%2C sequence LSNKQIADEMFISNKTVSTYKT;gbkey=misc_feature
AL590842.1	EMBL	sequence_feature	2182297	2182638	.	-	.	ID=id4497;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 112.60%2C E-value 7.5e-30;gbkey=misc_feature;inference=protein motif:PF00072
AL590842.1	EMBL	gene	2183470	2184792	.	-	.	ID=gene1910;Name=YPO1926;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1926
AL590842.1	EMBL	CDS	2183470	2184792	.	-	0	ID=cds1873;Parent=gene1910;Dbxref=GOA:Q9ZC36,InterPro:IPR003702,InterPro:IPR026888,PDB:3QLI,PDB:3QLK,PDB:3S8D,PDB:4N8H,PDB:4N8I,PDB:4N8J,PDB:4N8K,PDB:4N8L,UniProtKB/TrEMBL:Q9ZC36,NCBI_GP:CAL20564.1;Name=CAL20564.1;Note=Previously sequenced as Yersinia pestis protein TR:Q9ZC36 (EMBL:AL031866) (440 aa) fasta scores: E(): 0%2C100.0%25 id in 440 aa. Similar to Clostridium kluyveri 4-hydroxybutyrate coenzyme A transferase Cat2 SW:CAT2_CLOKL (P38942) (429 aa) fasta scores: E(): 0%2C 40.0%25 id in 440 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=putative 4-hydroxybutyrate coenzyme A transferase;protein_id=CAL20564.1;transl_table=11
AL590842.1	EMBL	gene	2184815	2185357	.	-	.	ID=gene1911;Name=YPO1927;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1927
AL590842.1	EMBL	CDS	2184815	2185357	.	-	0	ID=cds1874;Parent=gene1911;Dbxref=InterPro:IPR002539,InterPro:IPR029069,UniProtKB/TrEMBL:Q9ZC37,NCBI_GP:CAL20565.1;Name=CAL20565.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC37 (EMBL:AL031866) (180 aa) fasta scores: E(): 0%2C 100.0%25 id in 180 aa. Similar to Streptomyces hygroscopicus varascomyceticus transcription regulator FkbR2 TR:Q9KIF1 (EMBL:AF235504) (175 aa) fasta scores: E(): 0%2C 58.8%25 id in 153 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=putative transcription regulatory protein;protein_id=CAL20565.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2184905	2185267	.	-	.	ID=id4498;Note=Pfam match to entry PF01575 MaoC_dehydratas%2C MaoC like domain%2C score 60.70%2C E-value 3.1e-14;gbkey=misc_feature;inference=protein motif:PF01575
AL590842.1	EMBL	gene	2185407	2186249	.	-	.	ID=gene1912;Name=YPO1928;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1928
AL590842.1	EMBL	CDS	2185407	2186249	.	-	0	ID=cds1875;Parent=gene1912;Dbxref=GOA:Q9ZC38,InterPro:IPR005000,InterPro:IPR011206,InterPro:IPR015813,PDB:3QLL,UniProtKB/TrEMBL:Q9ZC38,NCBI_GP:CAL20566.1;Name=CAL20566.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC38 (EMBL:AL031866) (280 aa) fasta scores: E(): 0%2C 100.0%25 id in 280 aa. Similar to Klebsiella pneumoniae citrate lyase beta chain CitE SW:CILB_KLEPN (P17725) (289 aa) fasta scores: E(): 1.7e-21%2C 33.6%25 id in 286 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=putative citrate lyase beta chain;protein_id=CAL20566.1;transl_table=11
AL590842.1	EMBL	gene	2186344	2187222	.	+	.	ID=gene1913;Name=YPO1929;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1929
AL590842.1	EMBL	CDS	2186344	2187222	.	+	0	ID=cds1876;Parent=gene1913;Dbxref=GOA:Q0WFM0,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q0WFM0,NCBI_GP:CAL20567.1;Name=CAL20567.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC39 (EMBL:AL031866) (294 aa) fasta scores: E(): 0%2C 100.0%25 id in 292 aa. Similar to Salmonella typhimurium putative transcriptional regulator StmR TR:Q9RQ20 (EMBL:AF134978) (292 aa) fasta scores: E(): 0%2C78.6%25 id in 290 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=probable LysR-family transcriptional regulator;protein_id=CAL20567.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2186350	2186781	.	+	.	ID=id4499;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 151.30%2C E-value 1.7e-41;gbkey=misc_feature;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	2186389	2186454	.	+	.	ID=id4500;Note=Predicted helix-turn-helix motif with score 1576 (+4.55 SD) at aa 16-37%2C sequence RHFTRAAARLGIGQPPLSQQIK;gbkey=misc_feature
AL590842.1	EMBL	gene	2187297	2187770	.	-	.	ID=gene1914;Name=YPO1930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1930
AL590842.1	EMBL	CDS	2187297	2187770	.	-	0	ID=cds1877;Parent=gene1914;Dbxref=InterPro:IPR008970,InterPro:IPR013783,UniProtKB/TrEMBL:Q9ZC40,NCBI_GP:CAL20568.1;Name=CAL20568.1;Note=Previously sequenced Yersinia pestis hypothetical protein TR:Q9ZC40 (EMBL:AL031866) (157 aa) fasta scores: E(): 0%2C 100.0%25 id in 157 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=putative lipoprotein;protein_id=CAL20568.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2187690	2187722	.	-	.	ID=id4501;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	2187795	2188355	.	-	.	ID=gene1915;Name=YPO1931;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1931
AL590842.1	EMBL	CDS	2187795	2188355	.	-	0	ID=cds1878;Parent=gene1915;Dbxref=UniProtKB/TrEMBL:Q9ZC41,NCBI_GP:CAL20569.1;Name=CAL20569.1;Note=Previously sequenced Yersinia pestis hypothetical protein TR:Q9ZC41 (EMBL:AL031866) (186 aa) fasta scores: E(): 0%2C 100.0%25 id in 186 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=hypothetical protein;protein_id=CAL20569.1;transl_table=11
AL590842.1	EMBL	gene	2188575	2189804	.	-	.	ID=gene1916;Name=YPO1932;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1932
AL590842.1	EMBL	CDS	2188575	2189804	.	-	0	ID=cds1879;Parent=gene1916;Dbxref=GOA:Q9ZC42,InterPro:IPR005829,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q9ZC42,NCBI_GP:CAL20570.1;Name=CAL20570.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC42 (EMBL:AL031866) (409 aa) fasta scores: E(): 0%2C 100.0%25 id in 409 aa. Similar to Streptomyces coelicolor putative transmembrane transport protein SC6D7.28C TR:Q9RKX0 (EMBL:AL133213) (440 aa) fasta scores: E(): 0%2C 50.0%25 id in 414 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL133213;product=putative sugar transporter;protein_id=CAL20570.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2188578	2189768	.	-	.	ID=id4502;Note=Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporter%2C score 92.20%2C E-value 1.1e-23;gbkey=misc_feature;inference=protein motif:PF00083
AL590842.1	EMBL	sequence_feature	2188605	2188670	.	-	.	ID=id4503;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2188683	2188748	.	-	.	ID=id4504;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2188788	2188853	.	-	.	ID=id4505;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2188869	2188934	.	-	.	ID=id4506;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2188971	2189036	.	-	.	ID=id4507;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2189097	2189162	.	-	.	ID=id4508;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2189244	2189300	.	-	.	ID=id4509;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2189313	2189378	.	-	.	ID=id4510;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2189400	2189477	.	-	.	ID=id4511;Note=PS00217 Sugar transport proteins signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00217
AL590842.1	EMBL	sequence_feature	2189415	2189480	.	-	.	ID=id4512;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2189511	2189567	.	-	.	ID=id4513;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2189589	2189654	.	-	.	ID=id4514;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2189685	2189750	.	-	.	ID=id4515;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2189870	2190739	.	-	.	ID=gene1917;Name=YPO1933;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1933
AL590842.1	EMBL	CDS	2189870	2190739	.	-	0	ID=cds1880;Parent=gene1917;Dbxref=GOA:Q9ZC43,InterPro:IPR006992,UniProtKB/TrEMBL:Q9ZC43,NCBI_GP:CAL20571.1;Name=CAL20571.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC43 (EMBL:AL031866) (289 aa) fasta scores: E(): 0%2C 100.0%25 id in 289 aa. Similar to Sphingomonas sp. LB126 putative 2-pyrone-4%2C6-dicarboxylic acid hydrolase FldB TR:Q9L399 (EMBL:AJ277295) (295 aa) fasta scores: E(): 2.6e-27%2C 32.5%25 id in 280 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=putative dicarboxylic acid hydrolase;protein_id=CAL20571.1;transl_table=11
AL590842.1	EMBL	gene	2190851	2191813	.	+	.	ID=gene1918;Name=YPO1934;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1934
AL590842.1	EMBL	CDS	2190851	2191813	.	+	0	ID=cds1881;Parent=gene1918;Dbxref=GOA:Q9ZC44,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q9ZC44,NCBI_GP:CAL20572.1;Name=CAL20572.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC44 (EMBL:AL031866) (320 aa) fasta scores: E(): 0%2C 100.0%25 id in 320 aa. Similar to Escherichia coli hypothetical transcriptional regulator YneJ SW:YNEJ_ECOLI (P77309) (293 aa) fasta scores: E(): 8.7e-14%2C 27.0%25 id in 293 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=putative LysR-family transcriptional regulatory protein;protein_id=CAL20572.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2190857	2191282	.	+	.	ID=id4516;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 104.80%2C E-value 1.7e-27;gbkey=misc_feature;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	2190896	2190961	.	+	.	ID=id4517;Note=Predicted helix-turn-helix motif with score 1128 (+3.03 SD) at aa 16-37%2C sequence SNFSIAAERLHISISSLSKRIV;gbkey=misc_feature
AL590842.1	EMBL	sequence_feature	2190899	2190991	.	+	.	ID=id4518;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00044
AL590842.1	EMBL	gene	2192118	2192717	.	-	.	ID=gene1919;Name=YPO1935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1935
AL590842.1	EMBL	CDS	2192118	2192717	.	-	0	ID=cds1882;Parent=gene1919;Dbxref=GOA:Q9ZC45,InterPro:IPR003667,InterPro:IPR010967,NCBI_GP:CAL20573.1;Name=CAL20573.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC45 (EMBL:AL031866) (199 aa) fasta scores: E(): 0%2C 100.0%25 id in 199 aa. Similar to Vibrio alginolyticus Na(+)-translocating NADH-quinone reductase subunit E NqrE or Nqr5 SW:NQRE_VIBAL (Q56589) (198 aa) fasta scores: E(): 0%2C 67.5%25 id in 197 aa. Similar to YPO3236 (66.0%25 identity in 197 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=putative Na(+)-translocating NADH-quinone reductase subunit E;protein_id=CAL20573.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2192127	2192192	.	-	.	ID=id4519;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2192238	2192303	.	-	.	ID=id4520;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2192325	2192390	.	-	.	ID=id4521;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2192421	2192486	.	-	.	ID=id4522;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2192526	2192591	.	-	.	ID=id4523;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2192622	2192678	.	-	.	ID=id4524;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2193069	2194229	.	+	.	ID=gene1920;Name=YPO1936;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1936
AL590842.1	EMBL	CDS	2193069	2194229	.	+	0	ID=cds1883;Parent=gene1920;Dbxref=GOA:Q9ZC46,InterPro:IPR004839,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q9ZC46,NCBI_GP:CAL20574.1;Name=CAL20574.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC46 (EMBL:AL031866) (386 aa) fasta scores: E(): 0%2C 100.0%25 id in 386 aa. Similar to Bacillus halodurans aminotransferase Bh1127 TR:Q9KDT4 (EMBL:AP001511) (400 aa) fasta scores: E(): 0%2C 35.8%25 id in 391 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001511;product=putative aminotransferase;protein_id=CAL20574.1;transl_table=11
AL590842.1	EMBL	gene	2194425	2195951	.	-	.	ID=gene1921;Name=ansP;gbkey=Gene;gene=ansP;gene_biotype=protein_coding;locus_tag=YPO1937
AL590842.1	EMBL	CDS	2194425	2195951	.	-	0	ID=cds1884;Parent=gene1921;Dbxref=GOA:Q0WFL2,InterPro:IPR002293,InterPro:IPR004840,InterPro:IPR004841,UniProtKB/TrEMBL:Q0WFL2,NCBI_GP:CAL20575.1;Name=CAL20575.1;Note=Previously sequenced as Yersinia pestis probable L-asparagine permease AnsP TR:Q9ZC47 (EMBL:AL031866) (507 aa) fasta scores: E(): 0%2C 100.0%25 id in 507 aa. Similar to Salmonella typhimurium L-asparagine permease AnsP SW:ANSP_SALTY (P40812) (497 aa) fasta scores: E(): 0%2C 79.6%25 id in 489 aa;gbkey=CDS;gene=ansP;inference=similar to sequence:INSDC:AL031866;product=L-asparagine permease;protein_id=CAL20575.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2194548	2195879	.	-	.	ID=id4525;Note=Pfam match to entry PF00324 aa_permeases%2C Amino acid permease%2C score 666.90%2C E-value 1e-196;gbkey=misc_feature;gene=ansP;inference=protein motif:PF00324
AL590842.1	EMBL	sequence_feature	2194551	2194616	.	-	.	ID=id4526;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=ansP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2194629	2194694	.	-	.	ID=id4527;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=ansP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2194758	2194823	.	-	.	ID=id4528;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=ansP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2194836	2194901	.	-	.	ID=id4529;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=ansP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2194983	2195048	.	-	.	ID=id4530;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=ansP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2195109	2195174	.	-	.	ID=id4531;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=ansP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2195235	2195300	.	-	.	ID=id4532;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=ansP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2195376	2195441	.	-	.	ID=id4533;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=ansP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2195457	2195522	.	-	.	ID=id4534;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=ansP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2195568	2195633	.	-	.	ID=id4535;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=ansP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2195688	2195780	.	-	.	ID=id4536;Note=PS00218 Amino acid permeases signature.;gbkey=misc_feature;gene=ansP;inference=protein motif:ProSite:PS00218
AL590842.1	EMBL	sequence_feature	2195697	2195762	.	-	.	ID=id4537;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=ansP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2195778	2195843	.	-	.	ID=id4538;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=ansP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2196676	2197446	.	-	.	ID=gene1922;Name=YPO1938;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1938
AL590842.1	EMBL	CDS	2196676	2197446	.	-	0	ID=cds1885;Parent=gene1922;Dbxref=GOA:Q9ZC48,InterPro:IPR001034,InterPro:IPR011991,InterPro:IPR014036,InterPro:IPR018356,UniProtKB/TrEMBL:Q9ZC48,NCBI_GP:CAL20576.1;Name=CAL20576.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC48 (EMBL:AL031866) (256 aa) fasta scores: E(): 0%2C 99.6%25 id in 256 aa. Similar to Escherichia coli hypothetical transcriptional regulator YgbI SW:YGBI_ECOLI (P52598) (265 aa) fasta scores: E(): 0%2C 61.9%25 id in 252 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=probable deoR-family transcriptional regulatory protein;protein_id=CAL20576.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2196754	2197431	.	-	.	ID=id4539;Note=Pfam match to entry PF00455 deoR%2C Bacterial regulatory proteins%2C deoR family%2C score 221.70%2C E-value 1.1e-62;gbkey=misc_feature;inference=protein motif:PF00455
AL590842.1	EMBL	sequence_feature	2197324	2197389	.	-	.	ID=id4540;Note=Predicted helix-turn-helix motif with score 1817 (+5.38 SD) at aa 20-41%2C sequence VSIAELTERLGVSHMTIRRDVQ;gbkey=misc_feature
AL590842.1	EMBL	sequence_feature	2197327	2197431	.	-	.	ID=id4541;Note=PS00894 Bacterial regulatory proteins%2C deoR family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00894
AL590842.1	EMBL	gene	2198642	2199664	.	+	.	ID=gene1923;Name=YPO1939;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1939
AL590842.1	EMBL	CDS	2198642	2199664	.	+	0	ID=cds1886;Parent=gene1923;Dbxref=GOA:Q9ZC49,InterPro:IPR012338,InterPro:IPR015868,NCBI_GP:CAL20577.1;Name=CAL20577.1;Note=Previously sequenced as Yersinia pestis probable glutaminase TR:Q9ZC49 (EMBL:AL031866) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa. Similar to Rhizobium etli thermolabile glutaminase TR:O87405 (EMBL:AF057158) (309 aa) fasta scores: E(): 4.5e-27%2C 34.6%25 id in 292 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=putative glutaminase;protein_id=CAL20577.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2198894	2198941	.	+	.	ID=id4542;Note=PS00146 Beta-lactamase class-A active site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00146
AL590842.1	EMBL	gene	2199775	2201415	.	+	.	ID=gene1924;Name=YPO1940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1940
AL590842.1	EMBL	CDS	2199775	2201415	.	+	0	ID=cds1887;Parent=gene1924;Dbxref=GOA:Q9ZC50,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q9ZC50,NCBI_GP:CAL20578.1;Name=CAL20578.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC50 (EMBL:AL031866) (546 aa) fasta scores: E(): 0%2C 100.0%25 id in 546 aa. Similar to Bacillus subtilis hypothetical protein YfiU TR:O31563 (EMBL:Z99108) (518 aa) fasta scores: E(): 3.8e-13%2C 25.3%25 id in 538 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z99108;product=putative membrane protein;protein_id=CAL20578.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2199823	2199891	.	+	.	ID=id4543;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2199934	2200002	.	+	.	ID=id4544;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2200021	2200074	.	+	.	ID=id4545;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2200102	2200170	.	+	.	ID=id4546;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2200204	2200272	.	+	.	ID=id4547;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2200282	2200350	.	+	.	ID=id4548;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2200387	2200440	.	+	.	ID=id4549;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2200498	2200566	.	+	.	ID=id4550;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2200642	2200710	.	+	.	ID=id4551;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2200738	2200806	.	+	.	ID=id4552;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2200831	2200890	.	+	.	ID=id4553;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2200918	2200986	.	+	.	ID=id4554;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2201287	2201355	.	+	.	ID=id4555;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2201996	2203915	.	+	.	ID=gene1925;Name=YPO1941;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1941
AL590842.1	EMBL	CDS	2201996	2203915	.	+	0	ID=cds1888;Parent=gene1925;Dbxref=GOA:Q9ZC51,InterPro:IPR004923,UniProtKB/TrEMBL:Q9ZC51,NCBI_GP:CAL20579.1;Name=CAL20579.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC51 (EMBL:AL031866) (639 aa) fasta scores: E(): 0%2C 100.0%25 id in 639 aa. Similar to Campylobacter jejuni putative integral membrane protein Cj1658 TR:Q9PM19 (EMBL:AL139079) (696 aa) fasta scores: E(): 0%2C 31.9%25 id in 706 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL139079;product=putative membrane protein;protein_id=CAL20579.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2203148	2203216	.	+	.	ID=id4556;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2203253	2203312	.	+	.	ID=id4557;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2203340	2203399	.	+	.	ID=id4558;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2203457	2203510	.	+	.	ID=id4559;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2203568	2203636	.	+	.	ID=id4560;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2203673	2203741	.	+	.	ID=id4561;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2203712	2203735	.	+	.	ID=id4562;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	2203829	2203882	.	+	.	ID=id4563;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2204119	2204646	.	+	.	ID=gene1926;Name=YPO1942;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1942
AL590842.1	EMBL	CDS	2204119	2204646	.	+	0	ID=cds1889;Parent=gene1926;Dbxref=InterPro:IPR018470,UniProtKB/TrEMBL:Q9ZC52,NCBI_GP:CAL20580.1;Name=CAL20580.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC52 (EMBL:AL031866) (175 aa) fasta scores: E(): 0%2C 100.0%25 id in 175 aa. Similar to Campylobacter jejuni periplasmic protein P19 TR:Q9PM18 (EMBL:AL139079) (179 aa) fasta scores: E(): 0%2C 57.9%25 id in 178 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL139079;product=putative exported protein;protein_id=CAL20580.1;transl_table=11
AL590842.1	EMBL	gene	2204944	2206356	.	+	.	ID=gene1927;Name=YPO1943;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1943
AL590842.1	EMBL	CDS	2204947	2206356	.	+	0	ID=cds1890;Parent=gene1927;Dbxref=InterPro:IPR007029,InterPro:IPR018758,UniProtKB/TrEMBL:Q9ZC53,NCBI_GP:CAL20581.1;Name=CAL20581.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC53 (EMBL:AL031866) (469 aa) fasta scores: E(): 0%2C 100.0%25 id in 469 aa. Similar to Pasteurella multocida hypothetical protein Pm0451 TR:AAK02535 (EMBL:AE006080) (465 aa) fasta scores: E(): 0%2C 49.1%25 id in 468 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=putative membrane protein;protein_id=CAL20581.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2204944	2205012	.	+	.	ID=id4564;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2205031	2205090	.	+	.	ID=id4565;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2205118	2205171	.	+	.	ID=id4566;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2205190	2205258	.	+	.	ID=id4567;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2205301	2205369	.	+	.	ID=id4568;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2205403	2205471	.	+	.	ID=id4569;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2205535	2205603	.	+	.	ID=id4570;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2205676	2205744	.	+	.	ID=id4571;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2206359	2207651	.	+	.	ID=gene1928;Name=YPO1944;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1944
AL590842.1	EMBL	CDS	2206359	2207651	.	+	0	ID=cds1891;Parent=gene1928;Dbxref=GOA:Q9ZC54,InterPro:IPR003838,InterPro:IPR025857,UniProtKB/TrEMBL:Q9ZC54,NCBI_GP:CAL20582.1;Name=CAL20582.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC54 (EMBL:AL031866) (430 aa) fasta scores: E(): 0%2C 100.0%25 id in 430 aa. Similar to Campylobacter jejuni possible ABC transport system permease protein Cj1661 TR:Q9PM16 (EMBL:AL139079) (430 aa) fasta scores: E(): 0%2C 36.1%25 id in 435 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL139079;product=putative membrane protein;protein_id=CAL20582.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2207265	2207333	.	+	.	ID=id4572;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2207418	2207486	.	+	.	ID=id4573;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2207529	2207597	.	+	.	ID=id4574;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2207641	2208804	.	+	.	ID=gene1929;Name=YPO1945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1945
AL590842.1	EMBL	CDS	2207641	2208804	.	+	0	ID=cds1892;Parent=gene1929;Dbxref=GOA:Q9ZC55,InterPro:IPR003838,InterPro:IPR025857,UniProtKB/TrEMBL:Q9ZC55,NCBI_GP:CAL20583.1;Name=CAL20583.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC55 (EMBL:AL031866) (387 aa) fasta scores: E(): 0%2C 100.0%25 id in 387 aa. Similar to Campylobacter jejuni putative integral membrane protein Cj1662 TR:Q9PM15 (EMBL:AL139079) (372 aa) fasta scores: E(): 0%2C 32.5%25 id in 375 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL139079;product=putative membrane protein;protein_id=CAL20583.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2207740	2207808	.	+	.	ID=id4575;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2208436	2208504	.	+	.	ID=id4576;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2208586	2208654	.	+	.	ID=id4577;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2208682	2208750	.	+	.	ID=id4578;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2208808	2209521	.	+	.	ID=gene1930;Name=YPO1946;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1946
AL590842.1	EMBL	CDS	2208808	2209521	.	+	0	ID=cds1893;Parent=gene1930;Dbxref=GOA:Q9ZC56,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q9ZC56,NCBI_GP:CAL20584.1;Name=CAL20584.1;Note=Previously sequenced as Yersinia pestis hypothetical protein (EMBL:AL031866) (237 aa) fasta scores: E(): 0%2C100.0%25 id in 237 aa. Similar to Campylobacter jejuni putative ABC transport system ATP-binding protein Cj1663 TR:Q9PM14 (EMBL:AL139079) (217 aa) fasta scores: E(): 0%2C60.8%25 id in 209 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL139079;product=ABC transporter%2C ATP-binding protein;protein_id=CAL20584.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2208934	2209482	.	+	.	ID=id4579;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 219.40%2C E-value 5.4e-62;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2208955	2208978	.	+	.	ID=id4580;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	2209258	2209302	.	+	.	ID=id4581;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	2209511	2210008	.	+	.	ID=gene1931;Name=YPO1947;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1947
AL590842.1	EMBL	CDS	2209511	2210008	.	+	0	ID=cds1894;Parent=gene1931;Dbxref=GOA:Q9ZC57,InterPro:IPR012336,InterPro:IPR013740,UniProtKB/TrEMBL:Q9ZC57,NCBI_GP:CAL20585.1;Name=CAL20585.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC57 (EMBL:AL031866) (165 aa) fasta scores: E(): 0%2C 100.0%25 id in 165 aa. Similar to Bacillus subtilis ResA protein SW:RESA_BACSU (P35160) (181 aa) fasta scores: E(): 1.5e-09%2C 28.8%25 id in 132 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=putative thioredoxin;protein_id=CAL20585.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2209538	2209570	.	+	.	ID=id4582;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	2210008	2210319	.	+	.	ID=gene1932;Name=YPO1948;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1948
AL590842.1	EMBL	CDS	2210008	2210319	.	+	0	ID=cds1895;Parent=gene1932;Dbxref=GOA:Q0WFK1,InterPro:IPR009056,UniProtKB/TrEMBL:Q0WFK1,NCBI_GP:CAL20586.1;Name=CAL20586.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC58 (EMBL:AL031866) (104 aa) fasta scores: E(): 0%2C 100.0%25 id in 103 aa. Similar to Desulfovibrio vulgaris cytochrome c-553 precursor Cyf SW:C553_DESVH (P04032) (103 aa) fasta scores: E(): 0.0048%2C 29.8%25 id in 104 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=putative cytochrome;protein_id=CAL20586.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2210053	2210295	.	+	.	ID=id4583;Note=Pfam match to entry PF00034 cytochrome_c%2C Cytochrome c%2C score 21.40%2C E-value 0.0027;gbkey=misc_feature;inference=protein motif:PF00034
AL590842.1	EMBL	sequence_feature	2210095	2210112	.	+	.	ID=id4584;Note=PS00190 Cytochrome c family heme-binding site signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00190
AL590842.1	EMBL	gene	2210492	2211379	.	+	.	ID=gene1933;Name=tehB;gbkey=Gene;gene=tehB;gene_biotype=protein_coding;locus_tag=YPO1949
AL590842.1	EMBL	CDS	2210492	2211379	.	+	0	ID=cds1896;Parent=gene1933;Dbxref=GOA:Q9ZC59,InterPro:IPR004537,InterPro:IPR014431,InterPro:IPR014710,InterPro:IPR015392,InterPro:IPR015985,InterPro:IPR029063,UniProtKB/TrEMBL:Q9ZC59,NCBI_GP:CAL20587.1;Name=CAL20587.1;Note=Previously sequenced as Yersinia pestis probable tellurite resistance protein TehB TR:Q9ZC59 (EMBL:AL031866) (295 aa) fasta scores: E(): 0%2C 100.0%25 id in 295 aa. Similar to Streptococcus pneumoniae tellurite resistance protein TehB TR:Q9X3Q7 (EMBL:AF079807) (286 aa) fasta scores: E(): 0%2C 56.2%25 id in 283 aa;gbkey=CDS;gene=tehB;inference=similar to sequence:INSDC:AL031866;product=putative tellurite resistance protein;protein_id=CAL20587.1;transl_table=11
AL590842.1	EMBL	gene	2211520	2212737	.	+	.	ID=gene1934;Name=YPO1950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1950
AL590842.1	EMBL	CDS	2211520	2212737	.	+	0	ID=cds1897;Parent=gene1934;Dbxref=GOA:Q9ZC60,InterPro:IPR000587,InterPro:IPR000994,InterPro:IPR028980,InterPro:IPR029149,UniProtKB/TrEMBL:Q9ZC60,NCBI_GP:CAL20588.1;Name=CAL20588.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC60 (EMBL:AL031866) (405 aa) fasta scores: E(): 0%2C 99.8%25 id in 405 aa. Similar to Lactococcus lactis aminopeptidase P PepP TR:O08316 (EMBL:Y08842) (352 aa) fasta scores: E(): 4.3e-14%2C 25.9%25 id in 390 aa. Similar to YPO3004 (71.6%25 identity in 331 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:Y08842;product=putative peptidase;protein_id=CAL20588.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2212045	2212725	.	+	.	ID=id4585;Note=Pfam match to entry PF00557 Peptidase_M24%2Cmetallopeptidase family M24%2C score 59.60%2C E-value 6.9e-14;gbkey=misc_feature;inference=protein motif:PF00557
AL590842.1	EMBL	sequence_feature	2212757	2220065	.	+	.	ID=id4586;Note=hms hemin storage or pigmentation locus. Required for the blocking proventriculae of fleas.;gbkey=misc_feature
AL590842.1	EMBL	gene	2213406	2215874	.	+	.	ID=gene1935;Name=hmsH;gbkey=Gene;gene=hmsH;gene_biotype=protein_coding;locus_tag=YPO1951
AL590842.1	EMBL	CDS	2213406	2215874	.	+	0	ID=cds1898;Parent=gene1935;Dbxref=GOA:Q56939,InterPro:IPR011990,InterPro:IPR023870,UniProtKB/TrEMBL:Q56939,NCBI_GP:CAL20589.1;Name=CAL20589.1;Note=Previously sequenced as Yersinia pestis hemin binding protein HmsH TR:Q56939 (EMBL:U22837) (822 aa) fasta scores: E(): 0%2C 100.0%25 id in 822 aa. Similar to Escherichia coli O157:H7 putative outer membrane protein YcdS TR:AAG55642 (EMBL:AE005302) (807 aa) fasta scores: E(): 0%2C40.3%25 id in 824 aa;gbkey=CDS;gene=hmsH;inference=similar to sequence:INSDC:U22837;product=haemin storage system%2C HmsH protein;protein_id=CAL20589.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2213709	2213810	.	+	.	ID=id4587;Note=Pfam match to entry PF00515 TPR%2C TPR Domain%2C score 18.30%2C E-value 0.19;gbkey=misc_feature;gene=hmsH;inference=protein motif:PF00515
AL590842.1	EMBL	gene	2215887	2217908	.	+	.	ID=gene1936;Name=hmsF;gbkey=Gene;gene=hmsF;gene_biotype=protein_coding;locus_tag=YPO1952
AL590842.1	EMBL	CDS	2215887	2217908	.	+	0	ID=cds1899;Parent=gene1936;Dbxref=GOA:Q9R7V4,InterPro:IPR002509,InterPro:IPR011330,InterPro:IPR023854,UniProtKB/TrEMBL:Q9R7V4,NCBI_GP:CAL20590.1;Name=CAL20590.1;Note=Previously sequenced as Yersinia pestis hemin binding protein HmsF TR:Q56940 (EMBL:U22837) (673 aa) fasta scores: E(): 0%2C 99.7%25 id in 673 aa. Similar to Escherichia coli hypothetical lipoprotein YcdR SW:YCDR_ECOLI (P75906) (672 aa) fasta scores: E(): 0%2C 48.6%25 id in 662 aa;gbkey=CDS;gene=hmsF;inference=similar to sequence:INSDC:U22837;product=haemin storage system%2C HmsF protein;protein_id=CAL20590.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2215923	2215955	.	+	.	ID=id4588;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=hmsF;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	2216199	2216762	.	+	.	ID=id4589;Note=Pfam match to entry PF01522 Polysac_deacet%2CPolysaccharide deacetylase%2C score 0.50%2C E-value 0.00013;gbkey=misc_feature;gene=hmsF;inference=protein motif:PF01522
AL590842.1	EMBL	sequence_feature	2217327	2217374	.	+	.	ID=id4590;Note=PS00225 Crystallins beta and gamma 'Greek key' motif signature.;gbkey=misc_feature;gene=hmsF;inference=protein motif:ProSite:PS00225
AL590842.1	EMBL	gene	2217898	2219232	.	+	.	ID=gene1937;Name=hmsR;gbkey=Gene;gene=hmsR;gene_biotype=protein_coding;locus_tag=YPO1953
AL590842.1	EMBL	CDS	2217898	2219232	.	+	0	ID=cds1900;Parent=gene1937;Dbxref=GOA:Q0WFJ6,InterPro:IPR023853,InterPro:IPR029044,UniProtKB/TrEMBL:Q0WFJ6,NCBI_GP:CAL20591.1;Name=CAL20591.1;Note=Previously sequenced as Yersinia pestis hemin binding protein HmsR TR:Q56941 (EMBL:U22837) (457 aa) fasta scores: E(): 0%2C 99.8%25 id in 444 aa. Similar to Escherichia coli hypothetical protein YcdQ SW:YCDQ_ECOLI (P75905) (441 aa) fasta scores: E(): 0%2C 66.0%25 id in 441 aa. There is a discrepancy in the start codon;gbkey=CDS;gene=hmsR;inference=similar to sequence:INSDC:U22837;product=haemin storage system%2C HmsR protein;protein_id=CAL20591.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2217910	2217978	.	+	.	ID=id4591;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=hmsR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2217991	2218059	.	+	.	ID=id4592;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=hmsR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2218129	2218635	.	+	.	ID=id4593;Note=Pfam match to entry PF00535 Glycos_transf_2%2CGlycosyl transferases%2C score 69.10%2C E-value 9.2e-17;gbkey=misc_feature;gene=hmsR;inference=protein motif:PF00535
AL590842.1	EMBL	sequence_feature	2218855	2218923	.	+	.	ID=id4594;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=hmsR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2218981	2219049	.	+	.	ID=id4595;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=hmsR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2219083	2219151	.	+	.	ID=id4596;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=hmsR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2219229	2219696	.	+	.	ID=gene1938;Name=hmsS;gbkey=Gene;gene=hmsS;gene_biotype=protein_coding;locus_tag=YPO1954
AL590842.1	EMBL	CDS	2219229	2219696	.	+	0	ID=cds1901;Parent=gene1938;Dbxref=InterPro:IPR023829,UniProtKB/TrEMBL:P74989,NCBI_GP:CAL20592.1;Name=CAL20592.1;Note=Previously sequenced as Yersinia pestis hypothetical and essential protein HmsS TR:P74989 (EMBL:U22837) (155 aa) fasta scores: E(): 0%2C 100.0%25 id in 155 aa;gbkey=CDS;gene=hmsS;inference=similar to sequence:INSDC:U22837;product=haemin storage system%2C HmsS protein;protein_id=CAL20592.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2219262	2219330	.	+	.	ID=id4597;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=hmsS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2219388	2219456	.	+	.	ID=id4598;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=hmsS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2220029	2220928	.	+	.	ID=gene1939;Name=YPO1955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1955
AL590842.1	EMBL	CDS	2220029	2220928	.	+	0	ID=cds1902;Parent=gene1939;Dbxref=GOA:Q9ZC61,InterPro:IPR000182,InterPro:IPR016181,UniProtKB/TrEMBL:Q9ZC61,NCBI_GP:CAL20593.1;Name=CAL20593.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC61 (EMBL:AL031866) (299 aa) fasta scores: E(): 0%2C 100.0%25 id in 299 aa. Similar to Saccharomyces cerevisiae hypothetical protein Yir042C SW:YIW2_YEAST (P40586) (236 aa) fasta scores: E(): 0%2C 42.6%25 id in 230 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=putative acetyltransferase;protein_id=CAL20593.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2220110	2220178	.	+	.	ID=id4599;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2220503	2220739	.	+	.	ID=id4600;Note=Pfam match to entry PF00583 Acetyltransf%2CAcetyltransferase (GNAT) family%2C score 33.70%2C E-value 4.4e-06;gbkey=misc_feature;inference=protein motif:PF00583
AL590842.1	EMBL	gene	2221367	2221645	.	+	.	ID=gene1940;Name=YPO1956;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1956
AL590842.1	EMBL	CDS	2221367	2221645	.	+	0	ID=cds1903;Parent=gene1940;Dbxref=UniProtKB/TrEMBL:Q0WFJ3,NCBI_GP:CAL20594.1;Name=CAL20594.1;Note=Weakly similar to the internal region of Thermoplasma acidophilum NADH dehydrogenase%2C subunit I related protein TR:CAC12095 (EMBL:AL445066) (340 aa) fasta scores: E(): 1.4%2C 27.8%25 id in 90 aa%2C and to the internal region of Zymomonas mobilis phospho-N-acetylmuramoyl-pentapeptide-transferase MraY SW:MRAY_ZYMMO (P56834) (356 aa) fasta scores: E(): 1.8%2C31.0%25 id in 87 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL445066;product=hypothetical protein;protein_id=CAL20594.1;transl_table=11
AL590842.1	EMBL	gene	2221705	2222493	.	+	.	ID=gene1941;Name=phoH;gbkey=Gene;gene=phoH;gene_biotype=protein_coding;gene_synonym=psiH;locus_tag=YPO1957
AL590842.1	EMBL	CDS	2221705	2222493	.	+	0	ID=cds1904;Parent=gene1941;Dbxref=GOA:Q9ZC62,InterPro:IPR003714,InterPro:IPR027417,UniProtKB/TrEMBL:Q9ZC62,NCBI_GP:CAL20595.1;Name=CAL20595.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC62 (EMBL:AL031866) (262 aa) fasta scores: E(): 0%2C 100.0%25 id in 262 aa. The Y. pestis ORF lacks 93 amino acid at the N-terminal end. Similar to Escherichia coli phosphate starvation-inducible protein PhoH SW:PHOH_ECOLI (P31544) (354 aa) fasta scores: E(): 0%2C 91.2%25 id in 262 aa;gbkey=CDS;gene=phoH;inference=similar to sequence:INSDC:AL031866;product=putative phosphate starvation-inducible protein;protein_id=CAL20595.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2221945	2221968	.	+	.	ID=id4601;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=phoH;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2222596	2223696	.	-	.	ID=gene1942;Name=chaA;gbkey=Gene;gene=chaA;gene_biotype=protein_coding;locus_tag=YPO1958
AL590842.1	EMBL	CDS	2222596	2223696	.	-	0	ID=cds1905;Parent=gene1942;Dbxref=GOA:Q9ZC63,InterPro:IPR004713,InterPro:IPR004837,UniProtKB/TrEMBL:Q9ZC63,NCBI_GP:CAL20596.1;Name=CAL20596.1;Note=Previously sequenced as Yersinia pestis probable calcium/proton antiporter protein ChaA TR:Q9ZC63 (EMBL:AL031866) (366 aa) fasta scores: E(): 0%2C 100.0%25 id in 366 aa. Similar to Escherichia coli calcium/proton antiporter ChaA SW:CHAA_ECOLI (P31801) (366 aa) fasta scores: E(): 0%2C 78.4%25 id in 356 aa;gbkey=CDS;gene=chaA;inference=similar to sequence:INSDC:AL031866;product=calcium/proton antiporter;protein_id=CAL20596.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2222605	2222655	.	-	.	ID=id4602;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=chaA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2222677	2222733	.	-	.	ID=id4603;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=chaA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2222764	2222829	.	-	.	ID=id4604;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=chaA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2222857	2222922	.	-	.	ID=id4605;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=chaA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2222983	2223033	.	-	.	ID=id4606;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=chaA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2223127	2223192	.	-	.	ID=id4607;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=chaA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2223223	2223288	.	-	.	ID=id4608;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=chaA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2223310	2223366	.	-	.	ID=id4609;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=chaA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2223412	2223477	.	-	.	ID=id4610;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=chaA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2223517	2223582	.	-	.	ID=id4611;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=chaA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2223595	2223645	.	-	.	ID=id4612;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=chaA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2224245	2226026	.	-	.	ID=gene1943;Name=narR;gbkey=Gene;gene=narR;gene_biotype=protein_coding;gene_synonym=narX;locus_tag=YPO1959
AL590842.1	EMBL	CDS	2224245	2226026	.	-	0	ID=cds1906;Parent=gene1943;Dbxref=GOA:Q9ZC64,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR005467,InterPro:IPR011712,InterPro:IPR016380,InterPro:IPR029095,UniProtKB/TrEMBL:Q9ZC64,NCBI_GP:CAL20597.1;Name=CAL20597.1;Note=Previously sequenced as Yersinia pestis probable nitrate/nitrite sensor protein TR:Q9ZC64 (EMBL:AL031866) (593 aa) fasta scores: E(): 0%2C 100.0%25 id in 593 aa. Similar to Escherichia coli nitrate/nitrite sensor protein NarX SW:NARX_ECOLI (P10956) (598 aa) fasta scores: E(): 0%2C 47.9%25 id in 595 aa;gbkey=CDS;gene=narR;inference=similar to sequence:INSDC:AL031866;product=nitrate/nitrite sensor protein;protein_id=CAL20597.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2224269	2224826	.	-	.	ID=id4613;Note=Pfam match to entry PF00512 signal%2C Histidine kinase%2C score -27.40%2C E-value 0.0014;gbkey=misc_feature;gene=narR;inference=protein motif:PF00512
AL590842.1	EMBL	sequence_feature	2225358	2225570	.	-	.	ID=id4614;Note=Pfam match to entry PF00672 DUF5%2C HAMP domain%2C score 67.60%2C E-value 2.6e-16;gbkey=misc_feature;gene=narR;inference=protein motif:PF00672
AL590842.1	EMBL	sequence_feature	2225514	2225579	.	-	.	ID=id4615;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=narR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2225925	2225990	.	-	.	ID=id4616;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=narR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2226336	2227757	.	+	.	ID=gene1944;Name=YPO1960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1960
AL590842.1	EMBL	CDS	2226336	2227757	.	+	0	ID=cds1907;Parent=gene1944;Dbxref=GOA:Q9ZC65,InterPro:IPR000524,InterPro:IPR004839,InterPro:IPR011991,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q9ZC65,NCBI_GP:CAL20598.1;Name=CAL20598.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC65 (EMBL:AL031866) (473 aa) fasta scores: E(): 0%2C 100.0%25 id in 473 aa. Similar to Escherichia coli hypothetical multi modular protein TR:P77730 (EMBL:AE000241) (468 aa) fasta scores: E(): 0%2C 56.8%25 id in 465 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=putative GntR-family regulatory protein;protein_id=CAL20598.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2226354	2226533	.	+	.	ID=id4617;Note=Pfam match to entry PF00392 gntR%2C Bacterial regulatory proteins%2C gntR family%2C score 51.60%2C E-value 2.2e-14;gbkey=misc_feature;inference=protein motif:PF00392
AL590842.1	EMBL	gene	2227999	2228196	.	+	.	ID=gene1945;Name=YPO1961;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1961
AL590842.1	EMBL	CDS	2227999	2228196	.	+	0	ID=cds1908;Parent=gene1945;Dbxref=UniProtKB/TrEMBL:Q74UK6,NCBI_GP:CAL20599.1;Name=CAL20599.1;Note=Doubtful CDS (very low %25GC content). No significant database matches;gbkey=CDS;product=putative membrane protein;protein_id=CAL20599.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2228092	2228151	.	+	.	ID=id4618;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2228394	2229638	.	+	.	ID=gene1946;Name=argM;gbkey=Gene;gene=argM;gene_biotype=protein_coding;gene_synonym=astC,cstC;locus_tag=YPO1962
AL590842.1	EMBL	CDS	2228394	2229638	.	+	0	ID=cds1909;Parent=gene1946;Dbxref=GOA:Q8D0D7,InterPro:IPR004636,InterPro:IPR005814,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR017652,InterPro:IPR026330,NCBI_GP:CAL20600.1;Name=CAL20600.1;Note=Previously sequenced as Yersinia pestis probable succinylornithine aminotransferase AruC protein TR:Q9ZC66 (EMBL:AL031866) (414 aa) fasta scores: E(): 0%2C 100.0%25 id in 414 aa. Similar to Escherichia coli succinylornithine transaminase ArgM SW:ARGM_ECOLI (P77581) (406 aa) fasta scores: E(): 0%2C 68.9%25 id in 409 aa;gbkey=CDS;gene=argM;inference=similar to sequence:INSDC:AL031866;product=succinylornithine aminotransferase;protein_id=CAL20600.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2228487	2229554	.	+	.	ID=id4619;Note=Pfam match to entry PF00202 aminotran_3%2CAminotransferases class-III pyridoxal-phosphate%2C score 468.30%2C E-value 2.5e-162;gbkey=misc_feature;gene=argM;inference=protein motif:PF00202
AL590842.1	EMBL	sequence_feature	2229075	2229188	.	+	.	ID=id4620;Note=PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.;gbkey=misc_feature;gene=argM;inference=protein motif:ProSite:PS00600
AL590842.1	EMBL	gene	2229668	2230720	.	+	.	ID=gene1947;Name=astA;gbkey=Gene;gene=astA;gene_biotype=protein_coding;locus_tag=YPO1963
AL590842.1	EMBL	CDS	2229668	2230720	.	+	0	ID=cds1910;Parent=gene1947;Dbxref=GOA:Q9ZC67,InterPro:IPR007041,InterPro:IPR016181,InterPro:IPR017650,NCBI_GP:CAL20601.1;Name=CAL20601.1;Note=Previously sequenced as Yersinia pestis probable arginine/ornithine succinyltransferase AI subunit protein AruF TR:Q9ZC67 (EMBL:AL031866) (350 aa) fasta scores: E(): 0%2C 100.0%25 id in 350 aa. Similar to Escherichia coli arginine N-succinyltransferase AstA SW:ASTA_ECOLI (P76218) (344 aa) fasta scores: E(): 0%2C 63.1%25 id in 347 aa;gbkey=CDS;gene=astA;inference=similar to sequence:INSDC:AL031866;product=arginine N-succinyltransferase;protein_id=CAL20601.1;transl_table=11
AL590842.1	EMBL	gene	2230717	2232234	.	+	.	ID=gene1948;Name=astD;gbkey=Gene;gene=astD;gene_biotype=protein_coding;locus_tag=YPO1964
AL590842.1	EMBL	CDS	2230717	2232234	.	+	0	ID=cds1911;Parent=gene1948;Dbxref=GOA:Q9ZC68,InterPro:IPR015590,InterPro:IPR016160,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,InterPro:IPR017649,InterPro:IPR029510,NCBI_GP:CAL20602.1;Name=CAL20602.1;Note=Previously sequenced as Yersinia pestis probable succinylglutamate 5-semialdehyde dehydrogenase AruD TR:Q9ZC68 (EMBL:AL031866) (505 aa) fasta scores: E(): 0%2C100.0%25 id in 505 aa. Similar to Escherichia coli succinylglutamic semialdehyde dehydrogenase AstD SW:ASTD_ECOLI (P76217) (492 aa) fasta scores: E(): 0%2C 65.1%25 id in 484 aa;gbkey=CDS;gene=astD;inference=similar to sequence:INSDC:AL031866;product=succinylglutamic semialdehyde dehydrogenase;protein_id=CAL20602.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2230780	2232141	.	+	.	ID=id4621;Note=Pfam match to entry PF00171 aldedh%2C Aldehyde dehydrogenase family%2C score 283.20%2C E-value 3.3e-81;gbkey=misc_feature;gene=astD;inference=protein motif:PF00171
AL590842.1	EMBL	sequence_feature	2231482	2231505	.	+	.	ID=id4622;Note=PS00687 Aldehyde dehydrogenases glutamic acid active site.;gbkey=misc_feature;gene=astD;inference=protein motif:ProSite:PS00687
AL590842.1	EMBL	sequence_feature	2231566	2231601	.	+	.	ID=id4623;Note=PS00070 Aldehyde dehydrogenases cysteine active site.;gbkey=misc_feature;gene=astD;inference=protein motif:ProSite:PS00070
AL590842.1	EMBL	gene	2232258	2233601	.	+	.	ID=gene1949;Name=astB;gbkey=Gene;gene=astB;gene_biotype=protein_coding;locus_tag=YPO1965
AL590842.1	EMBL	CDS	2232258	2233601	.	+	0	ID=cds1912;Parent=gene1949;Dbxref=GOA:Q8D0D8,InterPro:IPR007079,NCBI_GP:CAL20603.1;Name=CAL20603.1;Note=Previously sequenced Yersinia pestis probable succinyarginine dihydrolase AruB TR:Q9ZC69 (EMBL:AL031866) (447 aa) fasta scores: E(): 0%2C 100.0%25 id in 447 aa. Similar to Escherichia coli succinylarginine dihydrolase AstB SW:ASTB_ECOLI (P76216) (447 aa) fasta scores: E(): 0%2C 65.8%25 id in 447 aa;gbkey=CDS;gene=astB;inference=similar to sequence:INSDC:AL031866;product=succinylarginine dihydrolase;protein_id=CAL20603.1;transl_table=11
AL590842.1	EMBL	gene	2233662	2234654	.	+	.	ID=gene1950;Name=astE;gbkey=Gene;gene=astE;gene_biotype=protein_coding;locus_tag=YPO1966
AL590842.1	EMBL	CDS	2233662	2234654	.	+	0	ID=cds1913;Parent=gene1950;Dbxref=GOA:Q9ZC70,InterPro:IPR007036,InterPro:IPR016681,NCBI_GP:CAL20604.1;Name=CAL20604.1;Note=Previously sequenced Yersinia pestis probable succinylglutamate desuccinylase AruE TR:Q9ZC70 (EMBL:AL031866) (330 aa) fasta scores: E(): 0%2C 100.0%25 id in 330 aa. Similar to Escherichia coli succinylglutamate desuccinylase AstE SW:ASTE_ECOLI (P76215) (322 aa) fasta scores: E(): 0%2C 49.1%25 id in 322 aa;gbkey=CDS;gene=astE;inference=similar to sequence:INSDC:AL031866;product=succinylglutamate desuccinylase;protein_id=CAL20604.1;transl_table=11
AL590842.1	EMBL	pseudogene	2235390	2236259	.	+	.	ID=gene1951;Name=nmpC;gbkey=Gene;gene=nmpC;gene_biotype=pseudogene;gene_synonym=phmA;is_ordered=true;locus_tag=YPO1967;part=1/2;pseudo=true
AL590842.1	EMBL	pseudogene	2238223	2238426	.	+	.	ID=gene1951;Name=nmpC;gbkey=Gene;gene=nmpC;gene_biotype=pseudogene;gene_synonym=phmA;is_ordered=true;locus_tag=YPO1967;part=2/2;pseudo=true
AL590842.1	EMBL	CDS	2235390	2236259	.	+	0	ID=cds1914;Parent=gene1951;Note=Previously sequenced Yersinia pestis hypothetical protein TR:Q9ZC71 (EMBL:AL031866) (315 aa) fasta scores: E(): 0%2C 100.0%25 id in 315 aa. This CDS is disrupted by the insertion of an IS100 element. The full length CDS is similar to Escherichia coli outer membrane porin protein NmpC protein NmpC SW:NMPC_ECOLI (P21420) (365 aa) fasta scores: E(): 0%2C 56.2%25 id in 370 aa;gbkey=CDS;gene=nmpC;inference=similar to sequence:INSDC:AL031866;product=porin (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	CDS	2238223	2238426	.	+	0	ID=cds1914;Parent=gene1951;Note=Previously sequenced Yersinia pestis hypothetical protein TR:Q9ZC71 (EMBL:AL031866) (315 aa) fasta scores: E(): 0%2C 100.0%25 id in 315 aa. This CDS is disrupted by the insertion of an IS100 element. The full length CDS is similar to Escherichia coli outer membrane porin protein NmpC protein NmpC SW:NMPC_ECOLI (P21420) (365 aa) fasta scores: E(): 0%2C 56.2%25 id in 370 aa;gbkey=CDS;gene=nmpC;inference=similar to sequence:INSDC:AL031866;product=porin (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	2235468	2236265	.	+	.	ID=id4624;Note=Pfam match to entry PF00267 Gram-ve_porins%2C General diffusion Gram-negative porins%2C score 448.60%2C E-value 6.5e-151;gbkey=misc_feature;inference=protein motif:PF00267
AL590842.1	EMBL	sequence_feature	2236259	2236264	.	+	.	ID=id4625;Note=sequence duplication around IS insertion;gbkey=misc_feature
AL590842.1	EMBL	repeat_region	2236265	2238215	.	+	.	ID=id4626;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	2236265	2236292	.	+	.	ID=id4627;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	2236351	2237397	.	+	.	ID=gene1952;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO1968
AL590842.1	EMBL	CDS	2236351	2237397	.	+	0	ID=cds1915;Parent=gene1952;Dbxref=GOA:Q0WFI2,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q0WFI2,NCBI_GP:CAL20606.1;Name=CAL20606.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL20606.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2236375	2236458	.	+	.	ID=id4628;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	sequence_feature	2236402	2236467	.	+	.	ID=id4629;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	2236696	2237229	.	+	.	ID=id4630;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	gene	2237397	2238149	.	+	.	ID=gene1953;Name=y0016;gbkey=Gene;gene=y0016;gene_biotype=protein_coding;gene_synonym=y1054,ypmt1.02,ypmt1.57c,yppcp1.02;locus_tag=YPO1969
AL590842.1	EMBL	CDS	2237397	2238149	.	+	0	ID=cds1916;Parent=gene1953;Dbxref=GOA:Q0WFI1,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q0WFI1,NCBI_GP:CAL20607.1;Name=CAL20607.1;Note=Similar to Yersinia pestis%2C and Escherichia coli putative IS100 transposase Ypmt1.57c or Y0016 or Y1054 or Yppcp1.02 or Ypmt1.02 TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 100.0%25 id in 250 aa. This CDS is missing the first two methionines. Possible frameshift%3B~was marked partial;gbkey=CDS;gene=y0016;inference=similar to sequence:INSDC:AL117211;product=putative IS100 transposase;protein_id=CAL20607.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2237535	2238074	.	+	.	ID=id4631;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=y0016;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	2237694	2237717	.	+	.	ID=id4632;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=y0016;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	INVERTED	2238188	2238215	.	-	.	ID=id4633;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	sequence_feature	2238216	2238221	.	+	.	ID=id4634;Note=sequence duplication around IS insertion;gbkey=misc_feature
AL590842.1	EMBL	gene	2238726	2239532	.	-	.	ID=gene1954;Name=hutG;gbkey=Gene;gene=hutG;gene_biotype=protein_coding;locus_tag=YPO1971
AL590842.1	EMBL	CDS	2238726	2239532	.	-	0	ID=cds1917;Parent=gene1954;Dbxref=GOA:Q9ZC73,InterPro:IPR002508,InterPro:IPR007709,InterPro:IPR010247,UniProtKB/TrEMBL:Q9ZC73,NCBI_GP:CAL20608.1;Name=CAL20608.1;Note=Previously sequenced Yersinia pestis hypothetical protein HutG TR:Q9ZC73 (EMBL:AL031866) (268 aa) fasta scores: E(): 0%2C 100.0%25 id in 268 aa. Similar to Pseudomonas putida N-formylglutamate amidohydrolase HutG TR:O31201 (EMBL:AF032970) (267 aa) fasta scores: E(): 0%2C 59.6%25 id in 260 aa;gbkey=CDS;gene=hutG;inference=similar to sequence:INSDC:AL031866;product=putative N-formylglutamate amidohydrolase;protein_id=CAL20608.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2239206	2239229	.	-	.	ID=id4635;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=hutG;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2239529	2240749	.	-	.	ID=gene1955;Name=hutI;gbkey=Gene;gene=hutI;gene_biotype=protein_coding;locus_tag=YPO1972
AL590842.1	EMBL	CDS	2239529	2240749	.	-	0	ID=cds1918;Parent=gene1955;Dbxref=GOA:Q9ZC74,InterPro:IPR005920,InterPro:IPR011059,NCBI_GP:CAL20609.1;Name=CAL20609.1;Note=Previously sequenced as Yersinia pestis hypothetical protein HutI SW:HUTI_YERPE (Q9ZC74) (406 aa) fasta scores: E(): 0%2C 100.0%25 id in 406 aa. Similar to Pseudomonas putida imidazolonepropionase HutI SW:HUTI_PSEPU (O31200) (400 aa) fasta scores: E(): 0%2C 54.2%25 id in 408 aa;gbkey=CDS;gene=hutI;product=imidazolonepropionase;protein_id=CAL20609.1;transl_table=11
AL590842.1	EMBL	gene	2240953	2241720	.	-	.	ID=gene1956;Name=hutC;gbkey=Gene;gene=hutC;gene_biotype=protein_coding;locus_tag=YPO1973
AL590842.1	EMBL	CDS	2240953	2241720	.	-	0	ID=cds1919;Parent=gene1956;Dbxref=GOA:Q9ZC75,InterPro:IPR000524,InterPro:IPR010248,InterPro:IPR011663,InterPro:IPR011991,InterPro:IPR028978,UniProtKB/TrEMBL:Q9ZC75,NCBI_GP:CAL20610.1;Name=CAL20610.1;Note=Previously sequenced as Yersinia pestis hypothetical protein HutC TR:Q9ZC75 (EMBL:AL031866) (255 aa) fasta scores: E(): 0%2C 99.6%25 id in 255 aa. Similar to Pseudomonas putida histidine utilization repressor HutC SW:HUTC_PSEPU (P22773) (248 aa) fasta scores: E(): 0%2C 63.2%25 id in 242 aa;gbkey=CDS;gene=hutC;inference=similar to sequence:INSDC:AL031866;product=putative GntR-family transcriptional regulatory protein;protein_id=CAL20610.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2241469	2241648	.	-	.	ID=id4636;Note=Pfam match to entry PF00392 gntR%2C Bacterial regulatory proteins%2C gntR family%2C score 85.00%2C E-value 9.7e-25;gbkey=misc_feature;gene=hutC;inference=protein motif:PF00392
AL590842.1	EMBL	sequence_feature	2241517	2241591	.	-	.	ID=id4637;Note=PS00043 Bacterial regulatory proteins%2C gntR family signature.;gbkey=misc_feature;gene=hutC;inference=protein motif:ProSite:PS00043
AL590842.1	EMBL	sequence_feature	2241523	2241588	.	-	.	ID=id4638;Note=Predicted helix-turn-helix motif with score 1438 (+4.08 SD) at aa 45-66%2C sequence PSESELVTELGVSRMTINRALR;gbkey=misc_feature;gene=hutC
AL590842.1	EMBL	gene	2241868	2243238	.	+	.	ID=gene1957;Name=YPO1974;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1974
AL590842.1	EMBL	CDS	2241868	2243238	.	+	0	ID=cds1920;Parent=gene1957;Dbxref=GOA:Q9ZC76,InterPro:IPR006680,InterPro:IPR010252,InterPro:IPR011059,UniProtKB/TrEMBL:Q9ZC76,NCBI_GP:CAL20611.1;Name=CAL20611.1;Note=Previously sequenced Yersinia pestis hypothetical protein TR:Q9ZC76 (EMBL:AL031866) (456 aa) fasta scores: E(): 0%2C 100.0%25 id in 456 aa. Similar to Myxococcus xanthus SdeB protein%2C which is essential for development and sporulation%2C TR:O68982 (EMBL:AF060075) (462 aa) fasta scores: E(): 0%2C 36.6%25 id in 421 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=putative chlorohydrolase;protein_id=CAL20611.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2242189	2243145	.	+	.	ID=id4639;Note=Pfam match to entry PF01685 ATZ_TRZ%2CChlorohydrolase%2C score 62.60%2C E-value 8.5e-15;gbkey=misc_feature;inference=protein motif:PF01685
AL590842.1	EMBL	gene	2243238	2243810	.	+	.	ID=gene1958;Name=YPO1975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1975
AL590842.1	EMBL	CDS	2243238	2243810	.	+	0	ID=cds1921;Parent=gene1958;Dbxref=InterPro:IPR010282,InterPro:IPR011051,InterPro:IPR014710,UniProtKB/TrEMBL:Q9ZC77,NCBI_GP:CAL20612.1;Name=CAL20612.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC77 (EMBL:AL031866) (190 aa) fasta scores: E(): 0%2C 100.0%25 id in 190 aa and to Escherichia coli hypothetical protein YdjR SW:YDJR_ECOLI (P76214) (191 aa) fasta scores: E(): 2.9e-18%2C 39.2%25 id in 171 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=conserved hypothetical protein;protein_id=CAL20612.1;transl_table=11
AL590842.1	EMBL	gene	2243988	2245964	.	-	.	ID=gene1959;Name=YPO1976;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1976
AL590842.1	EMBL	CDS	2243988	2245964	.	-	0	ID=cds1922;Parent=gene1959;Dbxref=GOA:Q9ZC78,InterPro:IPR005801,InterPro:IPR015890,UniProtKB/TrEMBL:Q9ZC78,NCBI_GP:CAL20613.1;Name=CAL20613.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC78 (EMBL:AL031866) (658 aa) fasta scores: E(): 0%2C 100.0%25 id in 658 aa. The C-terminal region of this CDS shows also some similarity to the C-terminal region of salicylate synthetase component I from Yersinia enterocolitica Irp9 [TR:Q9X9I8 (EMBL:AJ132668) (434 aa) fasta scores: E(): 5.8e-25%2C 35.5%25 id in 262 aa] and from a wide range of other microorganisms. Contains a 5x YT repeat codons 22..31;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=hypothetical protein;protein_id=CAL20613.1;transl_table=11
AL590842.1	EMBL	repeat_region	2245873	2245901	.	-	.	ID=id4640;Note=repeat region with 4.8xGTGTAG.;gbkey=repeat_region
AL590842.1	EMBL	pseudogene	2246601	2247609	.	+	.	ID=gene1960;Name=YPO1977;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO1977;pseudo=true
AL590842.1	EMBL	CDS	2246601	2247609	.	+	0	ID=cds1923;Parent=gene1960;Note=Similar to Salmonella typhimurium 3-oxoacyl-[acyl-carrier-protein] synthase III SW:FABH_SALTY (O85139) (317 aa) fasta scores: E(): 2.4e-21%2C 29.0%25 id in 314 aa%2C and to Xanthomonas campestris GumO TR:O34266 (EMBL:U70053) (435 aa) fasta scores: E(): 0%2C 38.3%25 id in 329 aa%2C and identical over its N-terminal and C-terminal regions to the previously sequenced Yersinia pestis Q9ZC79 and Q9ZC80%2C respectively. There is a possible frameshift mutation following codon 158. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=similar to sequence:INSDC:U70053;product=3-oxoacyl-[acyl-carrier-protein] synthase III (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	2247623	2248639	.	+	.	ID=gene1961;Name=YPO1979;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1979
AL590842.1	EMBL	CDS	2247623	2248639	.	+	0	ID=cds1924;Parent=gene1961;Dbxref=GOA:Q9ZC81,InterPro:IPR001509,InterPro:IPR016040,UniProtKB/TrEMBL:Q9ZC81,NCBI_GP:CAL20615.1;Name=CAL20615.1;Note=Previously sequenced as Yersinia pestis possible oxidoreductase TR:Q9ZC81 (EMBL:AL031866) (338 aa) fasta scores: E(): 0%2C 100.0%25 id in 338 aa. Similar to Mus musculus NAD(P)-dependent steroid dehydrogenase SW:NSDL_MOUSE (Q9R1J0) (362 aa) fasta scores: E(): 3.2e-16%2C28.1%25 id in 335 aa. Similar to YPO1355 (45.7%25 identity in 326 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=putative dehydrogenase;protein_id=CAL20615.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2247689	2247721	.	+	.	ID=id4641;Note=PS00639 Eukaryotic thiol (cysteine) proteases histidine active site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00639
AL590842.1	EMBL	gene	2248632	2249438	.	+	.	ID=gene1962;Name=YPO1980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1980
AL590842.1	EMBL	CDS	2248632	2249438	.	+	0	ID=cds1925;Parent=gene1962;Dbxref=InterPro:IPR001279,UniProtKB/TrEMBL:Q9ZC82,NCBI_GP:CAL20616.1;Name=CAL20616.1;Note=Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC82 (EMBL:AL031866) (268 aa) fasta scores: E(): 0%2C 100.0%25 id in 268 aa. Similar to Xanthomonas campestris hypothetical protein GumP TR:O34267 (EMBL:U70053) (282 aa) fasta scores: E(): 1.4e-22%2C 33.7%25 id in 252 aa;gbkey=CDS;inference=similar to sequence:INSDC:U70053;product=conserved hypothetical protein;protein_id=CAL20616.1;transl_table=11
AL590842.1	EMBL	gene	2249435	2250721	.	+	.	ID=gene1963;Name=YPO1981;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1981
AL590842.1	EMBL	CDS	2249435	2250721	.	+	0	ID=cds1926;Parent=gene1963;Dbxref=InterPro:IPR012685,UniProtKB/TrEMBL:Q74UA4,NCBI_GP:CAL20617.1;Name=CAL20617.1;Note=Similar to Methanobacterium thermoautotrophicum coenzyme F390 synthetase III Mth161 TR:O26263 (EMBL:AE000804) (434 aa) fasta scores: E(): 0.00035%2C 21.2%25 id in 448 aa%2C and to Vibrio cholerae CapK protein%2C putative Vc0924 TR:Q9KTH8 (EMBL:AE004175) (446 aa) fasta scores: E(): 1.9e-08%2C 24.4%25 id in 336 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004175;product=putative coenzyme synthetase;protein_id=CAL20617.1;transl_table=11
AL590842.1	EMBL	gene	2250855	2251817	.	+	.	ID=gene1964;Name=YPO1982;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1982
AL590842.1	EMBL	CDS	2250855	2251817	.	+	0	ID=cds1927;Parent=gene1964;Dbxref=GOA:Q7CI79,InterPro:IPR001509,InterPro:IPR016040,UniProtKB/TrEMBL:Q7CI79,NCBI_GP:CAL20618.1;Name=CAL20618.1;Note=Similar to Pseudomonas aeruginosa WbpK TR:P72144 (EMBL:U50396) (320 aa) fasta scores: E(): 2.8e-07%2C 29.8%25 id in 258 aa%2C and to Pseudomonas aeruginosa WbjfT TR:Q9KIC7 (EMBL:AF236052) (301 aa) fasta scores: E(): 7.7e-07%2C 27.0%25 id in 270 aa%2C and to Yersinia enterocolitica putative 6-deoxy-gulose synthetase-2 WbcB TR:Q56863 (EMBL:U46859) (292 aa) fasta scores: E(): 4e-06%2C 27.0%25 id in 256 aa. Proteins WbpK and WbjfT from P.aeruginosa and WbcB from Y. enterocolitica are all involved in O antigen biosynthesis;gbkey=CDS;inference=similar to sequence:INSDC:U50396;product=putative dehydrogenase;protein_id=CAL20618.1;transl_table=11
AL590842.1	EMBL	gene	2251817	2252971	.	+	.	ID=gene1965;Name=YPO1983;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1983
AL590842.1	EMBL	CDS	2251817	2252971	.	+	0	ID=cds1928;Parent=gene1965;Dbxref=GOA:Q0WFH0,InterPro:IPR025993,InterPro:IPR029044,UniProtKB/TrEMBL:Q0WFH0,NCBI_GP:CAL20619.1;Name=CAL20619.1;Note=Similar to Mus musculus ceramide glucosyltransferase UgcG TR:O88693 (EMBL:D89866) (394 aa) fasta scores: E(): 2.3e-10%2C 24.2%25 id in 389 aa%2C and to Rattus norvegicus ceramide glucosyltransferase TR:Q9R0E0 (EMBL:AF047707) (394 aa) fasta scores: E(): 5.8e-10%2C 23.9%25 id in 389 aa. These enzymes are involved in lipid glycosylation;gbkey=CDS;inference=similar to sequence:INSDC:D89866;product=putative glycosyl transferase;protein_id=CAL20619.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2251826	2251879	.	+	.	ID=id4642;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2252636	2252704	.	+	.	ID=id4643;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2252732	2252800	.	+	.	ID=id4644;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2252968	2253552	.	+	.	ID=gene1966;Name=YPO1984;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1984
AL590842.1	EMBL	CDS	2252968	2253552	.	+	0	ID=cds1929;Parent=gene1966;Dbxref=UniProtKB/TrEMBL:Q7CI80,NCBI_GP:CAL20620.1;Name=CAL20620.1;Note=Doubtful CDS. No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20620.1;transl_table=11
AL590842.1	EMBL	gene	2253549	2254736	.	+	.	ID=gene1967;Name=YPO1985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1985
AL590842.1	EMBL	CDS	2253549	2254736	.	+	0	ID=cds1930;Parent=gene1967;Dbxref=GOA:Q7CI81,InterPro:IPR002213,InterPro:IPR007235,UniProtKB/TrEMBL:Q7CI81,NCBI_GP:CAL20621.1;Name=CAL20621.1;Note=Similar to Streptomyces fradiae deoxyallosyl-transferase TylN TR:O70023 (EMBL:AJ005397) (422 aa) fasta scores: E(): 1e-08%2C 24.1%25 id in 370 aa%2C and to Saccharothrix aerocolonigenes Ngt protein TR:Q9S595 (EMBL:AB023953) (414 aa) fasta scores: E(): 1e-08%2C 24.0%25 id in 375 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ005397;product=putative glycosyl transferase;protein_id=CAL20621.1;transl_table=11
AL590842.1	EMBL	gene	2254897	2255361	.	-	.	ID=gene1968;Name=YPO1986;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1986
AL590842.1	EMBL	CDS	2254897	2255361	.	-	0	ID=cds1931;Parent=gene1968;Dbxref=UniProtKB/TrEMBL:Q7CI82,NCBI_GP:CAL20622.1;Name=CAL20622.1;Note=Similar to the internal region of Bacillus halodurans spore coat polysaccharide synthesis SpsK TR:Q9K7J6 (EMBL:AP001518) (283 aa) fasta scores: E(): 9.2%2C24.2%25 id in 124 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001518;product=putative exported protein;protein_id=CAL20622.1;transl_table=11
AL590842.1	EMBL	gene	2255531	2257189	.	-	.	ID=gene1969;Name=YPO1987;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1987
AL590842.1	EMBL	CDS	2255531	2257189	.	-	0	ID=cds1932;Parent=gene1969;Dbxref=UniProtKB/TrEMBL:Q7CI83,NCBI_GP:CAL20623.1;Name=CAL20623.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20623.1;transl_table=11
AL590842.1	EMBL	repeat_region	2257237	2258551	.	+	.	ID=id4645;Note=insertion sequence:IS285;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	2257237	2257265	.	+	.	ID=id4646;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	2257308	2258516	.	+	.	ID=gene1970;Name=y1062;gbkey=Gene;gene=y1062;gene_biotype=protein_coding;gene_synonym=ypmt1.80C;locus_tag=YPO1988
AL590842.1	EMBL	CDS	2257308	2258516	.	+	0	ID=cds1933;Parent=gene1970;Dbxref=GOA:O68779,InterPro:IPR001207,UniProtKB/TrEMBL:O68779,NCBI_GP:CAL20624.1;Name=CAL20624.1;Note=Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa.;gbkey=CDS;gene=y1062;inference=similar to sequence:INSDC:AF053947;product=transposase for the IS285 insertion element;protein_id=CAL20624.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2257308	2258444	.	+	.	ID=id4647;Note=Pfam match to entry PF00872 Transpo_mutator%2CTransposase%2C Mutator family%2C score 430.40%2C E-value 1.6e-125;gbkey=misc_feature;gene=y1062;inference=protein motif:PF00872
AL590842.1	EMBL	sequence_feature	2258001	2258075	.	+	.	ID=id4648;Note=PS01007 Transposases%2C Mutator family%2C signature.;gbkey=misc_feature;gene=y1062;inference=protein motif:ProSite:PS01007
AL590842.1	EMBL	INVERTED	2258523	2258551	.	-	.	ID=id4649;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	2258636	2260798	.	-	.	ID=gene1971;Name=YPO1989;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1989
AL590842.1	EMBL	CDS	2258636	2260798	.	-	0	ID=cds1934;Parent=gene1971;Dbxref=InterPro:IPR006597,InterPro:IPR011652,InterPro:IPR011990,UniProtKB/TrEMBL:Q7CI85,NCBI_GP:CAL20625.1;Name=CAL20625.1;Note=Similar at its C-terminal region to the following: Escherichia coli hypothetical 37.3 kDa protein in leuS-gltL intergenic region YbeQ SW:YBEQ_ECOLI (P77234) (327 aa) fasta scores: E(): 9.3e-12%2C 32.1%25 id in 196 aa%2C Neisseria meningitidis hypothetical protein Nmb0419 TR:Q9K0Y5 (EMBL:AE002398) (198 aa) fasta scores: E(): 1.3e-09%2C 28.5%25 id in 179 aa%2C and to Coxiella burnetii immunoreactive protein TR:Q9RN76 (EMBL:AF185288) (469 aa) fasta scores: E(): 4.1e-10%2C 24.6%25 id in 357 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF185288;product=putative exported protein;protein_id=CAL20625.1;transl_table=11
AL590842.1	EMBL	gene	2261376	2263487	.	+	.	ID=gene1972;Name=YPO1990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1990
AL590842.1	EMBL	CDS	2261376	2263487	.	+	0	ID=cds1935;Parent=gene1972;Dbxref=InterPro:IPR006597,InterPro:IPR011990,InterPro:IPR025115,UniProtKB/TrEMBL:Q0WFG3,NCBI_GP:CAL20626.1;Name=CAL20626.1;Note=Its internal region shows some similarity to Neisseria meningitidis hypothetical protein Nma1541 TR:Q9JU20 (EMBL:AL162756) (477 aa) fasta scores: E(): 0.21%2C25.7%25 id in 241 aa%2C and to Mycobacterium tuberculosis hypothetical 60.2 kDa protein Rv1135C or Mtci65.02C TR:O06535 (EMBL:Z95584) (618 aa) fasta scores: E(): 2%2C27.2%25 id in 184 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z95584;product=putative membrane protein;protein_id=CAL20626.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2261769	2261837	.	+	.	ID=id4650;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2261856	2261924	.	+	.	ID=id4651;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2263734	2264372	.	+	.	ID=gene1973;Name=YPO1991;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1991
AL590842.1	EMBL	CDS	2263734	2264372	.	+	0	ID=cds1936;Parent=gene1973;Dbxref=GOA:Q7CI86,InterPro:IPR003500,InterPro:IPR022133,UniProtKB/TrEMBL:Q7CI86,NCBI_GP:CAL20627.1;Name=CAL20627.1;Note=Similar to Escherichia coli ribose 5-phosphate isomerase B RpiB SW:RPIB_ECOLI (P37351) (149 aa) fasta scores: E(): 1.6%2C 28.3%25 id in 145 aa%2C and to Thermotoga maritima sugar-phosphate isomerase Tm1080 TR:Q9X0G9 (EMBL:AE001768) (143 aa) fasta scores: E(): 0.15%2C 32.0%25 id in 125 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE001768;product=putative sugar-phosphate isomerase;protein_id=CAL20627.1;transl_table=11
AL590842.1	EMBL	gene	2264507	2265166	.	-	.	ID=gene1974;Name=YPO1992;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1992
AL590842.1	EMBL	CDS	2264507	2265166	.	-	0	ID=cds1937;Parent=gene1974;Dbxref=GOA:Q7CI87,InterPro:IPR013216,InterPro:IPR016584,InterPro:IPR029063,UniProtKB/TrEMBL:Q7CI87,NCBI_GP:CAL20628.1;Name=CAL20628.1;Note=Similar to Escherichia coli hypothetical protein precursor YbcY SW:YBCY_ECOLI (P77460) (143 aa) fasta scores: E(): 2.9e-30%2C 55.2%25 id in 143 aa%2C and to Streptomyces maritimus putative O-methyl transferase EncK TR:Q9KHK8 (EMBL:AF254925) (241 aa) fasta scores: E(): 9.2e-23%2C 33.3%25 id in 210 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF254925;product=conserved hypothetical protein;protein_id=CAL20628.1;transl_table=11
AL590842.1	EMBL	gene	2265271	2265951	.	-	.	ID=gene1975;Name=YPO1993;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1993
AL590842.1	EMBL	CDS	2265271	2265951	.	-	0	ID=cds1938;Parent=gene1975;Dbxref=GOA:Q7CI88,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:Q7CI88,NCBI_GP:CAL20629.1;Name=CAL20629.1;Note=Similar to Streptomyces clavuligerus clavaldehyde dehydrogenase Cad TR:Q9LCV7 (EMBL:U87786) (247 aa) fasta scores: E(): 1.6e-14%2C 30.5%25 id in 203 aa%2C and to Deinococcus radiodurans oxidoreductase%2C short-chain dehydrogenase/reductase family Dr1938 TR:Q9RT30 (EMBL:AE002032) (283 aa) fasta scores: E(): 2.9e-16%2C 36.7%25 id in 215 aa;gbkey=CDS;inference=similar to sequence:INSDC:U87786;product=putative dehydrogenase;protein_id=CAL20629.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2265388	2265939	.	-	.	ID=id4652;Note=Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase%2C score 140.10%2C E-value 4e-38;gbkey=misc_feature;inference=protein motif:PF00106
AL590842.1	EMBL	sequence_feature	2265451	2265537	.	-	.	ID=id4653;Note=PS00061 Short-chain dehydrogenases/reductases family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00061
AL590842.1	EMBL	gene	2266292	2267242	.	-	.	ID=gene1976;Name=YPO1994;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1994
AL590842.1	EMBL	CDS	2266292	2267242	.	-	0	ID=cds1939;Parent=gene1976;Dbxref=InterPro:IPR011051,UniProtKB/TrEMBL:Q7CI89,NCBI_GP:CAL20630.1;Name=CAL20630.1;Note=Weakly similar to the internal region of Saccharomyces cerevisiae nonsense-mediated mRNA decay protein 2 Nmd2 or Upf2 or ifs1 or Sua1 or Yhr077C SW:NMD2_YEAST (P38798) (1089 aa) fasta scores: E(): 0.15%2C26.0%25 id in 289 aa. It also shows similarity to the N-terminus of Mus musculus calreticulin precursor CalR SW:CRTC_MOUSE (P14211) (416 aa) fasta scores: E(): 0.3%2C23.7%25 id in 215 aa;gbkey=CDS;product=hypothetical protein;protein_id=CAL20630.1;transl_table=11
AL590842.1	EMBL	gene	2267229	2268161	.	-	.	ID=gene1977;Name=YPO1995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1995
AL590842.1	EMBL	CDS	2267229	2268161	.	-	0	ID=cds1940;Parent=gene1977;Dbxref=InterPro:IPR011051,UniProtKB/TrEMBL:Q7CI90,NCBI_GP:CAL20631.1;Name=CAL20631.1;Note=Weakly similar to Escherichia coli O157:H7 Z0020 protein Z0020 TR:AAG54319 (EMBL:AE005178) (207 aa) fasta scores: E(): 6.6%2C 26.3%25 id in 156 aa. The similarity is limited to the central and C-terminal regions of this CDS;gbkey=CDS;inference=similar to sequence:INSDC:AE005178;product=hypothetical protein;protein_id=CAL20631.1;transl_table=11
AL590842.1	EMBL	gene	2268167	2269072	.	-	.	ID=gene1978;Name=YPO1996;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1996
AL590842.1	EMBL	CDS	2268167	2269072	.	-	0	ID=cds1941;Parent=gene1978;Dbxref=InterPro:IPR011989,InterPro:IPR016024,UniProtKB/TrEMBL:Q7CI91,NCBI_GP:CAL20632.1;Name=CAL20632.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20632.1;transl_table=11
AL590842.1	EMBL	gene	2269863	2270936	.	-	.	ID=gene1979;Name=YPO1997;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1997
AL590842.1	EMBL	CDS	2269863	2270936	.	-	0	ID=cds1942;Parent=gene1979;Dbxref=InterPro:IPR029058,InterPro:IPR029059,UniProtKB/TrEMBL:Q7CI92,NCBI_GP:CAL20633.1;Name=CAL20633.1;Note=No significant database matches;gbkey=CDS;product=putative exported protein;protein_id=CAL20633.1;transl_table=11
AL590842.1	EMBL	gene	2271149	2271619	.	-	.	ID=gene1980;Name=YPO1998;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1998
AL590842.1	EMBL	CDS	2271149	2271619	.	-	0	ID=cds1943;Parent=gene1980;Dbxref=InterPro:IPR011051,InterPro:IPR013096,InterPro:IPR014710,UniProtKB/TrEMBL:Q7CI93,NCBI_GP:CAL20634.1;Name=CAL20634.1;Note=Similar to Escherichia coli Pep1 TnpA TR:P75026 (EMBL:U60777) (140 aa) fasta scores: E(): 0.13%2C 31.4%25 id in 137 aa%2C and to Thermotoga maritima hypothetical 15.1 kDa protein Tm1010 TR:Q9X0A3 (EMBL:AE001762) (135 aa) fasta scores: E(): 1.2e-12%2C 42.0%25 id in 119 aa;gbkey=CDS;inference=similar to sequence:INSDC:U60777;product=putative exported protein;protein_id=CAL20634.1;transl_table=11
AL590842.1	EMBL	gene	2271674	2272096	.	-	.	ID=gene1981;Name=YPO1999;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO1999
AL590842.1	EMBL	CDS	2271674	2272096	.	-	0	ID=cds1944;Parent=gene1981;Dbxref=GOA:Q74U89,InterPro:IPR003779,InterPro:IPR029032,UniProtKB/TrEMBL:Q74U89,NCBI_GP:CAL20635.1;Name=CAL20635.1;Note=Similar to Acinetobacter calcoaceticus 4-carboxymuconolactone decarboxylase PcaC SW:DC4C_ACICA (P20370) (134 aa) fasta scores: E(): 1.4e-09%2C 35.9%25 id in 103 aa%2C and to Methanobacterium thermoautotrophicum gamma-carboxymuconolactone decarboxylase Mth234 TR:O26336 (EMBL:AE000810) (125 aa) fasta scores: E(): 4.7e-11%2C 35.5%25 id in 107 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE000810;product=putative decarboxylase;protein_id=CAL20635.1;transl_table=11
AL590842.1	EMBL	gene	2272373	2273764	.	-	.	ID=gene1982;Name=YPO2000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2000
AL590842.1	EMBL	CDS	2272373	2273764	.	-	0	ID=cds1945;Parent=gene1982;Dbxref=GOA:Q0WFF3,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR005467,InterPro:IPR006290,InterPro:IPR009082,UniProtKB/TrEMBL:Q0WFF3,NCBI_GP:CAL20636.1;Name=CAL20636.1;Note=Similar to Burkholderia pseudomallei sensor protein IrlS SW:IRLS_BURPS (O31396) (464 aa) fasta scores: E(): 0%2C29.1%25 id in 454 aa%2C and to Pseudomonas aeruginosa probable two-component sensor PA1438 TR:AAG04827 (EMBL:AE004573) (481 aa) fasta scores: E(): 0%2C 42.2%25 id in 453 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004573;product=putative two-component system sensor protein;protein_id=CAL20636.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2272394	2273017	.	-	.	ID=id4654;Note=Pfam match to entry PF00512 signal%2C Histidine kinase%2C score 129.50%2C E-value 6.1e-35;gbkey=misc_feature;inference=protein motif:PF00512
AL590842.1	EMBL	sequence_feature	2273057	2273269	.	-	.	ID=id4655;Note=Pfam match to entry PF00672 DUF5%2C HAMP domain%2C score 52.70%2C E-value 7.8e-12;gbkey=misc_feature;inference=protein motif:PF00672
AL590842.1	EMBL	sequence_feature	2273213	2273278	.	-	.	ID=id4656;Note=1 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2273770	2274462	.	-	.	ID=gene1983;Name=copR;gbkey=Gene;gene=copR;gene_biotype=protein_coding;locus_tag=YPO2001
AL590842.1	EMBL	CDS	2273770	2274462	.	-	0	ID=cds1946;Parent=gene1983;Dbxref=GOA:Q7CI94,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR006291,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:Q7CI94,NCBI_GP:CAL20637.1;Name=CAL20637.1;Note=Similar to Pseudomonas syringae transcriptional activator protein CopR SW:COPR_PSESM (Q02540) (227 aa) fasta scores: E(): 0%2C 60.8%25 id in 227 aa%2C and to Burkholderia pseudomallei transcriptional activator protein IrlR SW:IRLR_BURPS (O31395) (229 aa) fasta scores: E(): 0%2C57.6%25 id in 224 aa;gbkey=CDS;gene=copR;product=transcriptional activator;protein_id=CAL20637.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2273809	2274024	.	-	.	ID=id4657;Note=Pfam match to entry PF00486 trans_reg_C%2CTranscriptional regulatory protein%2C C terminal%2C score 99.40%2C E-value 1.9e-28;gbkey=misc_feature;gene=copR;inference=protein motif:PF00486
AL590842.1	EMBL	sequence_feature	2274130	2274462	.	-	.	ID=id4658;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 124.20%2C E-value 2.4e-33;gbkey=misc_feature;gene=copR;inference=protein motif:PF00072
AL590842.1	EMBL	ribosome_entry_site	2274471	2274474	.	-	.	ID=id4659;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	ribosome_entry_site	2274713	2274716	.	+	.	ID=id4660;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2274727	2275818	.	+	.	ID=gene1984;Name=YPO2002;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2002
AL590842.1	EMBL	CDS	2274727	2275818	.	+	0	ID=cds1947;Parent=gene1984;Dbxref=GOA:Q7CI95,InterPro:IPR029058,InterPro:IPR029059,UniProtKB/TrEMBL:Q7CI95,NCBI_GP:CAL20638.1;Name=CAL20638.1;Note=Similar to Escherichia coli hypothetical protein YcjY SW:YCJY_ECOLI (P76049) (310 aa) fasta scores: E(): 0%2C36.6%25 id in 295 aa%2C and to Pseudomonas aeruginosa hypothetical protein Pa2218 pa2218 TR:AAG05606 (EMBL:Z14064) (367 aa) fasta scores: E(): 2e-29%2C 33.8%25 id in 349 aa. Contains a 2x repeat unit: TSVFK;gbkey=CDS;inference=similar to sequence:INSDC:Z14064;product=conserved hypothetical protein;protein_id=CAL20638.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2275504	2275527	.	+	.	ID=id4661;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	repeat_region	2274741	2274783	.	+	.	ID=id4662;Note=repeat region with 2.5xTTTTAAAACGACATCCGT repeats.;gbkey=repeat_region
AL590842.1	EMBL	gene	2275967	2276674	.	+	.	ID=gene1985;Name=YPO2003;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2003
AL590842.1	EMBL	CDS	2275967	2276674	.	+	0	ID=cds1948;Parent=gene1985;Dbxref=InterPro:IPR029039,UniProtKB/TrEMBL:Q7CI96,NCBI_GP:CAL20639.1;Name=CAL20639.1;Note=No significant database matches;gbkey=CDS;product=putative exported protein;protein_id=CAL20639.1;transl_table=11
AL590842.1	EMBL	gene	2276689	2277384	.	+	.	ID=gene1986;Name=YPO2004;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2004
AL590842.1	EMBL	CDS	2276689	2277384	.	+	0	ID=cds1949;Parent=gene1986;Dbxref=GOA:Q7CI97,InterPro:IPR016174,InterPro:IPR025517,UniProtKB/TrEMBL:Q7CI97,NCBI_GP:CAL20640.1;Name=CAL20640.1;Note=No significant database matches;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL20640.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2276707	2276775	.	+	.	ID=id4663;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2276785	2276853	.	+	.	ID=id4664;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2276890	2276958	.	+	.	ID=id4665;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2277034	2277102	.	+	.	ID=id4666;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2277163	2277231	.	+	.	ID=id4667;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2277289	2277357	.	+	.	ID=id4668;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2277593	2278435	.	-	.	ID=gene1987;Name=YPO2005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2005
AL590842.1	EMBL	CDS	2277593	2278435	.	-	0	ID=cds1950;Parent=gene1987;Dbxref=InterPro:IPR025145,UniProtKB/TrEMBL:Q0WFE8,NCBI_GP:CAL20641.1;Name=CAL20641.1;Note=No significant database matches;gbkey=CDS;product=putative exported protein;protein_id=CAL20641.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2278442	2278446	.	-	.	ID=id4669;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2279186	2279722	.	+	.	ID=gene1988;Name=YPO2006;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2006
AL590842.1	EMBL	CDS	2279186	2279722	.	+	0	ID=cds1951;Parent=gene1988;Dbxref=UniProtKB/TrEMBL:Q0WFE7,NCBI_GP:CAL20642.1;Name=CAL20642.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20642.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2279708	2279712	.	+	.	ID=id4670;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2279719	2280549	.	+	.	ID=gene1989;Name=YPO2007;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2007
AL590842.1	EMBL	CDS	2279719	2280549	.	+	0	ID=cds1952;Parent=gene1989;Dbxref=GOA:Q7CI98,InterPro:IPR013094,InterPro:IPR029058,UniProtKB/TrEMBL:Q7CI98,NCBI_GP:CAL20643.1;Name=CAL20643.1;Note=Weak similarity with the C-terminal regions of Pseudomonas sp lipase LipP TR:O52270 (EMBL:AF034088) (308 aa) fasta scores: E(): 7.2e-05%2C 27.3%25 id in 242 aa%2C and Acinetobacter calcoaceticus carboxylesterase EstA TR:Q60123 (EMBL:X74839) (356 aa) fasta scores: E(): 0.0078%2C 22.3%25 id in 251 aa;gbkey=CDS;inference=similar to sequence:INSDC:X74839;product=putative esterase;protein_id=CAL20643.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2280548	2280552	.	+	.	ID=id4671;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2280557	2280955	.	+	.	ID=gene1990;Name=YPO2008;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2008
AL590842.1	EMBL	CDS	2280557	2280955	.	+	0	ID=cds1953;Parent=gene1990;Dbxref=InterPro:IPR001763,UniProtKB/TrEMBL:Q0WFE5,NCBI_GP:CAL20644.1;Name=CAL20644.1;Note=Similar to an internal region of Bacillus halodurans hypothetical protein BH2092 TR:Q9KB42 (EMBL:AP001514) (162 aa) fasta scores: E(): 1.4e-17%2C 44.5%25 id in 119 aa%2C and to the C-terminal region of Vibrio cholerae hypothetical protein VCA1053 TR:Q9KKP9 (EMBL:AE004431) (166 aa) fasta scores: E(): 9.7e-12%2C 31.0%25 id in 116 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001514;product=putative rhodanese-like protein;protein_id=CAL20644.1;transl_table=11
AL590842.1	EMBL	gene	2281003	2281512	.	-	.	ID=gene1991;Name=YPO2009;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2009
AL590842.1	EMBL	CDS	2281003	2281512	.	-	0	ID=cds1954;Parent=gene1991;Dbxref=GOA:Q7CI99,InterPro:IPR001584,InterPro:IPR012337,UniProtKB/TrEMBL:Q7CI99,NCBI_GP:CAL20645.1;Name=CAL20645.1;Note=Similar to the C-terminal region of Pseudomonas aeruginosa hypothetical protein PA0257 TR:AAG03646 (EMBL:AE004463) (263 aa) fasta scores: E(): 0%2C 65.2%25 id in 141 aa%2C and to and internal region of Porphyromonas gingivalis transposase Orf2 TR:Q9L796 (EMBL:AF224744) (312 aa) fasta scores: E(): 3.1e-14%2C 41.7%25 id in 144 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF224744;product=putative integrase core domain protein;protein_id=CAL20645.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2281012	2281431	.	-	.	ID=id4672;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 97.30%2C E-value 5.7e-27;gbkey=misc_feature;inference=protein motif:PF00665
AL590842.1	EMBL	gene	2281530	2281844	.	-	.	ID=gene1992;Name=YPO2009a;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2009a
AL590842.1	EMBL	CDS	2281530	2281844	.	-	0	ID=cds1955;Parent=gene1992;Dbxref=GOA:Q0WFE3,InterPro:IPR009057,UniProtKB/TrEMBL:Q0WFE3,NCBI_GP:CAL20646.1;Name=CAL20646.1;Note=C-terminus is similar to Pseudomonas aeruginosa hypothetical protein PA0258 TR:Q9I6N1 (EMBL:AE004463) (61 aa) fasta scores: E(): 1.7e-05%2C 52.542%25 id in 59 aa. Full length CDS is weakly similar to Lactococcus lactis hypothetical protein YafG TR:Q9CJE4 (EMBL:AE006243) (123 aa) fasta scores: E(): 5.1%2C 23.711%25 id in 97 aa. Possible alternative translational start sites;gbkey=CDS;inference=similar to sequence:INSDC:AE006243;product=conserved hypothetical protein;protein_id=CAL20646.1;transl_table=11
AL590842.1	EMBL	gene	2282141	2283232	.	-	.	ID=gene1993;Name=ychF;gbkey=Gene;gene=ychF;gene_biotype=protein_coding;locus_tag=YPO2010
AL590842.1	EMBL	CDS	2282141	2283232	.	-	0	ID=cds1956;Parent=gene1993;Dbxref=GOA:Q7CIA0,InterPro:IPR004396,InterPro:IPR006073,InterPro:IPR012675,InterPro:IPR012676,InterPro:IPR013029,InterPro:IPR023192,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CIA0,NCBI_GP:CAL20647.1;Name=CAL20647.1;Note=Similar to Escherichia coli probable GTP-binding protein YchF SW:YCHF_ECOLI (P31216) (362 aa) fasta scores: E(): 0%2C 92.5%25 id in 362 aa%2C and to Haemophilus influenzae probable GTP-binding protein HI0393 SW:YCHF_HAEIN (P44681) (362 aa) fasta scores: E(): 0%2C 79.6%25 id in 362 aa;gbkey=CDS;gene=ychF;product=conserved hypothetical protein;protein_id=CAL20647.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2283185	2283208	.	-	.	ID=id4673;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ychF;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2283396	2283986	.	-	.	ID=gene1994;Name=pth;gbkey=Gene;gene=pth;gene_biotype=protein_coding;locus_tag=YPO2011
AL590842.1	EMBL	CDS	2283396	2283986	.	-	0	ID=cds1957;Parent=gene1994;Dbxref=GOA:Q8ZEY4,InterPro:IPR001328,InterPro:IPR018171,NCBI_GP:CAL20648.1;Name=CAL20648.1;Note=Similar to Escherichia coli peptidyl-tRNA hydrolase Pth SW:PTH_ECOLI (P23932) (194 aa) fasta scores: E(): 0%2C78.6%25 id in 192 aa%2C and to Salmonella typhi peptidyl-tRNA hydrolase Pth SW:PTH_SALTI (Q60001) (194 aa) fasta scores: E(): 0%2C 76.6%25 id in 192 aa;gbkey=CDS;gene=pth;product=peptidyl-tRNA hydrolase;protein_id=CAL20648.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2283417	2283980	.	-	.	ID=id4674;Note=Pfam match to entry PF01195 Pept_tRNA_hydro%2CPeptidyl-tRNA hydrolase%2C score 333.90%2C E-value 1.9e-96;gbkey=misc_feature;gene=pth;inference=protein motif:PF01195
AL590842.1	EMBL	sequence_feature	2283624	2283656	.	-	.	ID=id4675;Note=PS01196 Peptidyl-tRNA hydrolase signature 2.;gbkey=misc_feature;gene=pth;inference=protein motif:ProSite:PS01196
AL590842.1	EMBL	ribosome_entry_site	2284337	2284344	.	+	.	ID=id4676;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2284348	2284620	.	+	.	ID=gene1995;Name=YPO2012;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2012
AL590842.1	EMBL	CDS	2284348	2284620	.	+	0	ID=cds1958;Parent=gene1995;Dbxref=InterPro:IPR019698,UniProtKB/TrEMBL:Q7CIA1,NCBI_GP:CAL20649.1;Name=CAL20649.1;Note=Similar to Escherichia coli hypothetical protein YchH SW:YCHH_ECOLI (P31807) (92 aa) fasta scores: E(): 6.4e-26%2C 68.5%25 id in 92 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL20649.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2284372	2284440	.	+	.	ID=id4677;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2284468	2284536	.	+	.	ID=id4678;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2284822	2285769	.	-	.	ID=gene1996;Name=prs;gbkey=Gene;gene=prs;gene_biotype=protein_coding;gene_synonym=prsA;locus_tag=YPO2013
AL590842.1	EMBL	CDS	2284822	2285769	.	-	0	ID=cds1959;Parent=gene1996;Dbxref=GOA:Q8ZEY2,InterPro:IPR000842,InterPro:IPR005946,InterPro:IPR029057,InterPro:IPR029099,NCBI_GP:CAL20650.1;Name=CAL20650.1;Note=Similar to Salmonella typhimurium ribose-phosphate pyrophosphokinase PrsA SW:KPRS_SALTY (P15849) (314 aa) fasta scores: E(): 0%2C 97.1%25 id in 314 aa%2C and to Escherichia coli ribose-phosphate pyrophosphokinase PrsA SW:KPRS_ECOLI (P08330) (314 aa) fasta scores: E(): 0%2C 97.1%25 id in 314 aa;gbkey=CDS;gene=prs;product=ribose-phosphate pyrophosphokinase;protein_id=CAL20650.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2284951	2285364	.	-	.	ID=id4679;Note=Pfam match to entry PF00156 Pribosyltran%2CPhosphoribosyl transferase domain%2C score 123.90%2C E-value 2.9e-33;gbkey=misc_feature;gene=prs;inference=protein motif:PF00156
AL590842.1	EMBL	sequence_feature	2285086	2285124	.	-	.	ID=id4680;Note=PS00103 Purine/pyrimidine phosphoribosyl transferases signature.;gbkey=misc_feature;gene=prs;inference=protein motif:ProSite:PS00103
AL590842.1	EMBL	sequence_feature	2285338	2285385	.	-	.	ID=id4681;Note=PS00114 Phosphoribosyl pyrophosphate synthetase signature.;gbkey=misc_feature;gene=prs;inference=protein motif:ProSite:PS00114
AL590842.1	EMBL	sequence_feature	2285386	2285415	.	-	.	ID=id4682;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.;gbkey=misc_feature;gene=prs;inference=protein motif:ProSite:PS00339
AL590842.1	EMBL	ribosome_entry_site	2285778	2285781	.	-	.	ID=id4683;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2286110	2287009	.	-	.	ID=gene1997;Name=ipk;gbkey=Gene;gene=ipk;gene_biotype=protein_coding;locus_tag=YPO2014
AL590842.1	EMBL	CDS	2286110	2287009	.	-	0	ID=cds1960;Parent=gene1997;Dbxref=GOA:Q8ZEY1,InterPro:IPR004424,InterPro:IPR006204,InterPro:IPR013750,InterPro:IPR014721,InterPro:IPR020568,NCBI_GP:CAL20651.1;Name=CAL20651.1;Note=Similar to Escherichia coli 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase IspE TR:AAF29530 (EMBL:AJ249325) (283 aa) fasta scores: E(): 0%2C76.2%25 id in 277 aa%2C and to Vibrio cholerae 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase IspE TR:Q9KQ23 (EMBL:AE004289) (295 aa) fasta scores: E(): 0%2C60.9%25 id in 281 aa;gbkey=CDS;gene=ipk;inference=similar to sequence:INSDC:AJ249325;product=putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;protein_id=CAL20651.1;transl_table=11
AL590842.1	EMBL	gene	2287011	2287634	.	-	.	ID=gene1998;Name=YPO2015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2015
AL590842.1	EMBL	CDS	2287011	2287634	.	-	0	ID=cds1961;Parent=gene1998;Dbxref=GOA:Q8ZEY0,InterPro:IPR004565,InterPro:IPR029046,NCBI_GP:CAL20652.1;Name=CAL20652.1;Note=Similar to Escherichia coli outer-membrane lipoprotein LolB SW:LOLB_ECOLI (P24208) (207 aa) fasta scores: E(): 0%2C 63.8%25 id in 207 aa%2C and to Salmonella typhimurium outer-membrane lipoprotein LolB SW:LOLB_SALTY (P30752) (207 aa) fasta scores: E(): 0%2C 62.8%25 id in 207 aa;gbkey=CDS;product=putative lipoprotein;protein_id=CAL20652.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2287569	2287601	.	-	.	ID=id4684;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	2287940	2289202	.	+	.	ID=gene1999;Name=hemA;gbkey=Gene;gene=hemA;gene_biotype=protein_coding;locus_tag=YPO2016
AL590842.1	EMBL	CDS	2287940	2289202	.	+	0	ID=cds1962;Parent=gene1999;Dbxref=GOA:Q8ZEX9,InterPro:IPR000343,InterPro:IPR006151,InterPro:IPR015895,InterPro:IPR015896,InterPro:IPR016040,InterPro:IPR018214,NCBI_GP:CAL20653.1;Name=CAL20653.1;Note=Similar to Escherichia coli glutamyl-tRNA reductase HemA SW:HEM1_ECOLI (P13580) (418 aa) fasta scores: E(): 0%2C79.7%25 id in 418 aa%2C and to Salmonella typhimurium glutamyl-tRNA reductase HemA SW:HEM1_SALTY (P13581) (418 aa) fasta scores: E(): 0%2C 79.7%25 id in 418 aa;gbkey=CDS;gene=hemA;product=glutamyl-tRNA reductase;protein_id=CAL20653.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2288042	2289193	.	+	.	ID=id4685;Note=Pfam match to entry PF00745 GlutR%2C Glutaminyl-tRNA reductase%2C score 705.20%2C E-value 3e-208;gbkey=misc_feature;gene=hemA;inference=protein motif:PF00745
AL590842.1	EMBL	gene	2289235	2290317	.	+	.	ID=gene2000;Name=prfA;gbkey=Gene;gene=prfA;gene_biotype=protein_coding;gene_synonym=sueB,uar;locus_tag=YPO2017
AL590842.1	EMBL	CDS	2289235	2290317	.	+	0	ID=cds1963;Parent=gene2000;Dbxref=GOA:Q8ZEX8,InterPro:IPR000352,InterPro:IPR004373,InterPro:IPR005139,InterPro:IPR014720,NCBI_GP:CAL20654.1;Name=CAL20654.1;Note=Similar to Escherichia coli peptide chain release factor 1 PrfA SW:RF1_ECOLI (P07011) (360 aa) fasta scores: E(): 0%2C 85.6%25 id in 360 aa%2C and to Salmonella typhimurium peptide chain release factor 1 PrfA SW:RF1_SALTY (P13654) (360 aa) fasta scores: E(): 0%2C 85.8%25 id in 360 aa;gbkey=CDS;gene=prfA;product=peptide chain release factor 1;protein_id=CAL20654.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2289856	2290197	.	+	.	ID=id4686;Note=Pfam match to entry PF00472 RF-1%2C Peptidyl-tRNA hydrolase domain%2C score 244.80%2C E-value 1.2e-69;gbkey=misc_feature;gene=prfA;inference=protein motif:PF00472
AL590842.1	EMBL	sequence_feature	2289916	2289966	.	+	.	ID=id4687;Note=PS00745 Prokaryotic-type class I peptide chain release factors signature.;gbkey=misc_feature;gene=prfA;inference=protein motif:ProSite:PS00745
AL590842.1	EMBL	gene	2290317	2291147	.	+	.	ID=gene2001;Name=YPO2018;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2018
AL590842.1	EMBL	CDS	2290317	2291147	.	+	0	ID=cds1964;Parent=gene2001;Dbxref=GOA:Q7CIA2,InterPro:IPR002052,InterPro:IPR004556,InterPro:IPR019874,InterPro:IPR025714,InterPro:IPR029063,NCBI_GP:CAL20655.1;Name=CAL20655.1;Note=Similar to Escherichia coli possible protoporphyrinogen oxidase HemK SW:HEMK_ECOLI (P37186) (277 aa) fasta scores: E(): 0%2C 62.5%25 id in 275 aa%2C and to Vibrio cholerae possible protoporphyrinogen oxidase HemK TR:Q9KQ26 (EMBL:AE004289) (286 aa) fasta scores: E(): 0%2C 54.2%25 id in 260 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004289;product=putative protoporphyrinogen oxidase;protein_id=CAL20655.1;transl_table=11
AL590842.1	EMBL	gene	2291211	2291612	.	+	.	ID=gene2002;Name=YPO2019;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2019
AL590842.1	EMBL	CDS	2291211	2291612	.	+	0	ID=cds1965;Parent=gene2002;Dbxref=InterPro:IPR007360,UniProtKB/TrEMBL:Q7CIA3,NCBI_GP:CAL20656.1;Name=CAL20656.1;Note=Similar to Salmonella typhimurium hypothetical protein TR:Q9XCQ2 (EMBL:AF134855) (129 aa) fasta scores: E(): 4.6e-23%2C 56.3%25 id in 126 aa%2C and to Escherichia coli hypothetical protein TR:Q46755 (EMBL:U18555) (130 aa) fasta scores: E(): 3.6e-19%2C 50.8%25 id in 120 aa. The S. typhimurium protein has been shown to contribute to Salmonella pathogenicity island 1 (SPI1) gene transcription;gbkey=CDS;inference=similar to sequence:INSDC:U18555;product=putative membrane protein;protein_id=CAL20656.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2291238	2291297	.	+	.	ID=id4688;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2291358	2291417	.	+	.	ID=id4689;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2291427	2291495	.	+	.	ID=id4690;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2291514	2291582	.	+	.	ID=id4691;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2291609	2292418	.	+	.	ID=gene2003;Name=YPO2020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2020
AL590842.1	EMBL	CDS	2291609	2292418	.	+	0	ID=cds1966;Parent=gene2003;Dbxref=InterPro:IPR011990,UniProtKB/TrEMBL:Q7CIA4,NCBI_GP:CAL20657.1;Name=CAL20657.1;Note=Similar to Salmonella typhimurium hypothetical protein YchA TR:Q9XCQ1 (EMBL:AF134855) (269 aa) fasta scores: E(): 0%2C 63.6%25 id in 269 aa%2C and to Escherichia coli hypothetical protein YchA SW:YCHA_ECOLI (P20101) (269 aa) fasta scores: E(): 0%2C 61.7%25 id in 269 aa. The S. typhimurium protein has been shown to contribute to Salmonella pathogenicity island 1 (SPI1) gene transcription;gbkey=CDS;inference=similar to sequence:INSDC:AF134855;product=conserved hypothetical protein;protein_id=CAL20657.1;transl_table=11
AL590842.1	EMBL	gene	2292514	2293368	.	+	.	ID=gene2004;Name=kdsA;gbkey=Gene;gene=kdsA;gene_biotype=protein_coding;locus_tag=YPO2021
AL590842.1	EMBL	CDS	2292514	2293368	.	+	0	ID=cds1967;Parent=gene2004;Dbxref=GOA:Q8ZEX4,InterPro:IPR006218,InterPro:IPR006269,InterPro:IPR013785,NCBI_GP:CAL20658.1;Name=CAL20658.1;Note=Similar to Escherichia coli 2-dehydro-3-deoxyphosphooctonate aldolase KdsA SW:KDSA_ECOLI (P17579) (284 aa) fasta scores: E(): 0%2C 90.1%25 id in 284 aa%2C and to Pasteurella haemolytica 2-dehydro-3-deoxyphosphooctonate aldolase KdsA SW:KDSA_PASHA (P95514) (284 aa) fasta scores: E(): 0%2C 80.3%25 id in 284 aa;gbkey=CDS;gene=kdsA;product=2-dehydro-3-deoxyphosphooctonate aldolase;protein_id=CAL20658.1;transl_table=11
AL590842.1	EMBL	repeat_region	2293705	2294416	.	+	.	ID=id4692;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	2293850	2294308	.	+	.	ID=gene2005;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO2023
AL590842.1	EMBL	CDS	2293850	2294308	.	+	0	ID=cds1968;Parent=gene2005;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL20659.1;Name=CAL20659.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL20659.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2293904	2294215	.	+	.	ID=id4693;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	pseudogene	2296817	2298088	.	-	.	ID=gene2006;Name=YPO2027;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO2027;part=1/2;pseudo=true
AL590842.1	EMBL	pseudogene	2294432	2294857	.	-	.	ID=gene2006;Name=YPO2027;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO2027;part=2/2;pseudo=true
AL590842.1	EMBL	CDS	2296817	2298088	.	-	0	ID=cds1969;Parent=gene2006;Dbxref=PSEUDO:CAL20660.1;Note=Similar to Escherichia coli hypothetical protein YchM SW:YCHM_ECOLI (P40877) (550 aa) fasta scores: E(): 7.4e-159%2C 71.558%25 id in 552 aa%2C and to Pasteurella multocida hypothetical protein PM0948 TR:Q9CM88 (EMBL:AE006134) (569 aa) fasta scores: E(): 9.3e-127%2C57.651%25 id in 562 aa. CDS disrupted by the insertion sequence IS100 after codon 424.;gbkey=CDS;inference=similar to sequence:INSDC:AE006134;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	CDS	2294432	2294857	.	-	0	ID=cds1969;Parent=gene2006;Dbxref=PSEUDO:CAL20660.1;Note=Similar to Escherichia coli hypothetical protein YchM SW:YCHM_ECOLI (P40877) (550 aa) fasta scores: E(): 7.4e-159%2C 71.558%25 id in 552 aa%2C and to Pasteurella multocida hypothetical protein PM0948 TR:Q9CM88 (EMBL:AE006134) (569 aa) fasta scores: E(): 9.3e-127%2C57.651%25 id in 562 aa. CDS disrupted by the insertion sequence IS100 after codon 424.;gbkey=CDS;inference=similar to sequence:INSDC:AE006134;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	2294456	2294773	.	-	.	ID=id4694;Note=Pfam match to entry PF01740 STAS%2C STAS domain%2C score 53.10%2C E-value 6.2e-12;gbkey=misc_feature;inference=protein motif:PF01740
AL590842.1	EMBL	sequence_feature	2296940	2297005	.	-	.	ID=id4695;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2297069	2297134	.	-	.	ID=id4696;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2297180	2297245	.	-	.	ID=id4697;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2297492	2297557	.	-	.	ID=id4698;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2297642	2297707	.	-	.	ID=id4699;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2297723	2297788	.	-	.	ID=id4700;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2297852	2297917	.	-	.	ID=id4701;Note=PS01130 Sulfate transporters signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01130
AL590842.1	EMBL	sequence_feature	2297924	2297989	.	-	.	ID=id4702;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	repeat_region	2294862	2296815	.	-	.	ID=id4703;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	2294862	2294889	.	+	.	ID=id4704;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	2294928	2295710	.	-	.	ID=gene2007;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO2025
AL590842.1	EMBL	CDS	2294928	2295710	.	-	0	ID=cds1970;Parent=gene2007;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL20661.1;Name=CAL20661.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL20661.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2295003	2295542	.	-	.	ID=id4705;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	2295360	2295383	.	-	.	ID=id4706;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2295707	2296729	.	-	.	ID=gene2008;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO2026
AL590842.1	EMBL	CDS	2295707	2296729	.	-	0	ID=cds1971;Parent=gene2008;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL20662.1;Name=CAL20662.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL20662.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2295851	2296384	.	-	.	ID=id4707;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	sequence_feature	2296613	2296678	.	-	.	ID=id4708;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	2296622	2296705	.	-	.	ID=id4709;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	INVERTED	2296788	2296815	.	-	.	ID=id4710;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	sequence_feature	2296814	2297734	.	-	.	ID=id4711;Note=Pfam match to entry PF00916 Sulfate_transp%2C Sulfate transporter family%2C score 266.40%2C E-value 3.9e-76;gbkey=misc_feature;inference=protein motif:PF00916
AL590842.1	EMBL	gene	2298327	2298623	.	-	.	ID=gene2009;Name=YPO2027a;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2027a
AL590842.1	EMBL	CDS	2298327	2298623	.	-	0	ID=cds1972;Parent=gene2009;Dbxref=UniProtKB/TrEMBL:Q74U71,NCBI_GP:CAL20663.1;Name=CAL20663.1;Note=Doubtful CDS. No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20663.1;transl_table=11
AL590842.1	EMBL	tRNA	2298924	2299013	.	-	.	ID=rna48;Note=tRNA Ser anticodon GGA%2C Cove score 59.10;gbkey=tRNA;product=tRNA-Ser
AL590842.1	EMBL	exon	2298924	2299013	.	-	.	ID=id4712;Parent=rna48;Note=tRNA Ser anticodon GGA%2C Cove score 59.10;gbkey=tRNA;product=tRNA-Ser
AL590842.1	EMBL	gene	2299155	2300030	.	-	.	ID=gene2010;Name=YPO2028;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2028
AL590842.1	EMBL	CDS	2299155	2300030	.	-	0	ID=cds1973;Parent=gene2010;Dbxref=GOA:Q7CIA5,InterPro:IPR004129,InterPro:IPR017946,UniProtKB/TrEMBL:Q7CIA5,NCBI_GP:CAL20664.1;Name=CAL20664.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein RV2277c SW:YM77_MYCTU (Q50687) (301 aa) fasta scores: E(): 0%2C 36.1%25 id in 277 aa. N-terminal region is similar to the N-terminus of Bacillus subtilis glycerophosphoryl diester phosphodiesterase GlpQ SW:GLPQ_BACSU (P37965) (293 aa) fasta scores: E(): 1e-10%2C34.5%25 id in 145 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL20664.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2300037	2300042	.	-	.	ID=id4713;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2300331	2301413	.	-	.	ID=gene2011;Name=YPO2029;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2029
AL590842.1	EMBL	CDS	2300331	2301413	.	-	0	ID=cds1974;Parent=gene2011;Dbxref=UniProtKB/TrEMBL:Q0WFC5,NCBI_GP:CAL20665.1;Name=CAL20665.1;Note=Weak similarity to Escherichia coli protein YnjB SW:YNJB_ECOLI (P76223) (388 aa) fasta scores: E(): 0.0059%2C25.5%25 id in 326 aa%2C and to Streptomyces coelicolor putative lipoprotein SCE46.13C TR:Q9RKH6 (EMBL:AL133252) (417 aa) fasta scores: E(): 0.0098%2C 22.2%25 id in 315 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL133252;product=putative exported protein;protein_id=CAL20665.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2301422	2301426	.	-	.	ID=id4714;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2301433	2302269	.	-	.	ID=gene2012;Name=YPO2030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2030
AL590842.1	EMBL	CDS	2301433	2302269	.	-	0	ID=cds1975;Parent=gene2012;Dbxref=GOA:Q7CIA6,InterPro:IPR000515,UniProtKB/TrEMBL:Q7CIA6,NCBI_GP:CAL20666.1;Name=CAL20666.1;Note=Similar to Escherichia coli spermidine/putrescine transport system permease protein PotC SW:POTC_ECOLI (P23859) (264 aa) fasta scores: E(): 1.5e-11%2C 24.7%25 id in 219 aa%2C and to Bacillus licheniformis putative inner membrane protein Lam TR:Q45294 (EMBL:X94148) (270 aa) fasta scores: E(): 5.9e-19%2C 29.2%25 id in 267 aa;gbkey=CDS;inference=similar to sequence:INSDC:X94148;product=putative binding-protein-dependent transport system membrane protein;protein_id=CAL20666.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2301484	2301534	.	-	.	ID=id4715;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2301562	2301783	.	-	.	ID=id4716;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 56.60%2C E-value 5.3e-13;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	2301565	2301630	.	-	.	ID=id4717;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2301658	2301723	.	-	.	ID=id4718;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2301871	2301936	.	-	.	ID=id4719;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2301973	2302038	.	-	.	ID=id4720;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2302165	2302230	.	-	.	ID=id4721;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2302266	2303132	.	-	.	ID=gene2013;Name=YPO2031;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2031
AL590842.1	EMBL	CDS	2302266	2303132	.	-	0	ID=cds1976;Parent=gene2013;Dbxref=GOA:Q7CIA7,InterPro:IPR000515,UniProtKB/TrEMBL:Q7CIA7,NCBI_GP:CAL20667.1;Name=CAL20667.1;Note=Similar to Escherichia coli spermidine/putrescine transport system permease protein PotB SW:POTB_ECOLI (P23860) (275 aa) fasta scores: E(): 1.2e-12%2C 21.4%25 id in 266 aa%2C and to Agrobacterium tumefaciens inner membrane protein MotC TR:Q44382 (EMBL:AF242881) (294 aa) fasta scores: E(): 3.7e-16%2C 28.7%25 id in 258 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF242881;product=putative binding-protein-dependent transport system membrane protein;protein_id=CAL20667.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2302302	2302367	.	-	.	ID=id4722;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2302392	2302613	.	-	.	ID=id4723;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 34.80%2C E-value 1.9e-06;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	2302470	2302535	.	-	.	ID=id4724;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2302599	2302664	.	-	.	ID=id4725;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2302755	2302820	.	-	.	ID=id4726;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2302860	2302916	.	-	.	ID=id4727;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2303031	2303096	.	-	.	ID=id4728;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	ribosome_entry_site	2302277	2302283	.	-	.	ID=id4729;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	pseudogene	2304601	2304921	.	-	.	ID=gene2014;Name=YPO2034;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO2034;part=1/2;pseudo=true
AL590842.1	EMBL	pseudogene	2303141	2303890	.	-	.	ID=gene2014;Name=YPO2034;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO2034;part=2/2;pseudo=true
AL590842.1	EMBL	CDS	2304601	2304921	.	-	0	ID=cds1977;Parent=gene2014;Note=Similar to Vibrio cholerae iron (III) transpoter ATP-inding protein VCA0687 TR:Q9KLQ5 (EMBL:AE004398) (351 aa) fasta scores: E(): 0%2C 41.2%25 id in 352 aa%2C and to Vibrio cholerae ABC transporter%2C ATP-binding protein VCA0602 TR:Q9KLY9 (EMBL:AE004390) (403 aa) fasta scores: E(): 9.2e-47%2C 43.831%25 id in 308 aa. N-terminal of CDS is similar to N-terminal region of Yersinia pestis (369 aa) YPO3712 fasta scores: E(): 6.6e-14%2C 51.5%25 id in 101 aa overlap. CDS is disrupted by the insertion of an IS1541 element after codon 107;gbkey=CDS;inference=similar to sequence:INSDC:AE004398;product=putative ABC transporter ATP-binding protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	CDS	2303141	2303890	.	-	0	ID=cds1977;Parent=gene2014;Note=Similar to Vibrio cholerae iron (III) transpoter ATP-inding protein VCA0687 TR:Q9KLQ5 (EMBL:AE004398) (351 aa) fasta scores: E(): 0%2C 41.2%25 id in 352 aa%2C and to Vibrio cholerae ABC transporter%2C ATP-binding protein VCA0602 TR:Q9KLY9 (EMBL:AE004390) (403 aa) fasta scores: E(): 9.2e-47%2C 43.831%25 id in 308 aa. N-terminal of CDS is similar to N-terminal region of Yersinia pestis (369 aa) YPO3712 fasta scores: E(): 6.6e-14%2C 51.5%25 id in 101 aa overlap. CDS is disrupted by the insertion of an IS1541 element after codon 107;gbkey=CDS;inference=similar to sequence:INSDC:AE004398;product=putative ABC transporter ATP-binding protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	2303567	2303863	.	-	.	ID=id4730;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 21.70%2C E-value 4.9e-07;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2303753	2303797	.	-	.	ID=id4731;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	2304778	2304801	.	-	.	ID=id4732;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	ribosome_entry_site	2303141	2303144	.	-	.	ID=id4733;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	repeat_region	2303889	2304600	.	+	.	ID=id4734;Note=Contains a 'A' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	2304034	2304492	.	+	.	ID=gene2015;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO2033
AL590842.1	EMBL	CDS	2304034	2304492	.	+	0	ID=cds1978;Parent=gene2015;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL20669.1;Name=CAL20669.1;Note=Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL20669.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2304088	2304399	.	+	.	ID=id4735;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	2305121	2305951	.	+	.	ID=gene2016;Name=YPO2035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2035
AL590842.1	EMBL	CDS	2305121	2305951	.	+	0	ID=cds1979;Parent=gene2016;Dbxref=GOA:Q7CIA8,InterPro:IPR004129,InterPro:IPR017946,UniProtKB/TrEMBL:Q7CIA8,NCBI_GP:CAL20670.1;Name=CAL20670.1;Note=Weak similarity to Escherichia coli glycerophosphoryl diester phosphodiesterase UgpQ SW:UGPQ_ECOLI (P10908) (247 aa) fasta scores: E(): 5.8e-10%2C25.1%25 id in 207 aa%2C and to Agrobacterium radiobacter hypothetical protein AccF TR:O30545 (EMBL:AF010180) (305 aa) fasta scores: E(): 2.9e-18%2C 30.8%25 id in 250 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF010180;product=hypothetical protein;protein_id=CAL20670.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2305956	2305960	.	+	.	ID=id4736;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2305965	2307077	.	+	.	ID=gene2017;Name=YPO2036;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2036
AL590842.1	EMBL	CDS	2305965	2307077	.	+	0	ID=cds1980;Parent=gene2017;Dbxref=InterPro:IPR000600,InterPro:IPR011991,UniProtKB/TrEMBL:Q0WFC0,NCBI_GP:CAL20671.1;Name=CAL20671.1;Note=N-terminal region is similar to the N-terminus of Bacillus subtilis xylose repressor XylR SW:XYLR_BACSU (P16557) (384 aa) fasta scores: E(): 2.4e-15%2C 27.7%25 id in 256 aa. Full length CDS has weak similarity to Rhizobium sp hypothetical protein Y4FQ SW:Y4FQ_RHISN (P55455) (392 aa) fasta scores: E(): 1.4e-27%2C 30.1%25 id in 366 aa;gbkey=CDS;product=putative transcriptional regulatory protein;protein_id=CAL20671.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2306043	2306108	.	+	.	ID=id4737;Note=Predicted helix-turn-helix motif with score 1561 (+4.50 SD) at aa 27-48%2C sequence VTRAELARLSNLTAGAITQQCR;gbkey=misc_feature
AL590842.1	EMBL	sequence_feature	2306343	2306696	.	+	.	ID=id4738;Note=Pfam match to entry PF00480 ROK%2C ROK family%2C score 69.10%2C E-value 1.8e-19;gbkey=misc_feature;inference=protein motif:PF00480
AL590842.1	EMBL	tRNA	2307334	2307423	.	-	.	ID=rna49;Note=tRNA Ser anticodon GGA%2C Cove score 62.70;gbkey=tRNA;product=tRNA-Ser
AL590842.1	EMBL	exon	2307334	2307423	.	-	.	ID=id4739;Parent=rna49;Note=tRNA Ser anticodon GGA%2C Cove score 62.70;gbkey=tRNA;product=tRNA-Ser
AL590842.1	EMBL	ribosome_entry_site	2307703	2307706	.	+	.	ID=id4740;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2307712	2308449	.	+	.	ID=gene2018;Name=YPO2037;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2037
AL590842.1	EMBL	CDS	2307712	2308449	.	+	0	ID=cds1981;Parent=gene2018;Dbxref=GOA:Q8ZEW6,InterPro:IPR003141,InterPro:IPR004013,InterPro:IPR016195,InterPro:IPR023710,NCBI_GP:CAL20672.1;Name=CAL20672.1;Note=Similar to Escherichia coli hypothetical protein YcdX SW:YCDX_ECOLI (P75914) (245 aa) fasta scores: E(): 0%2C76.3%25 id in 245 aa%2C and to Vibrio cholerae hypothetical protein VCA0894 TR:Q9KL54 (EMBL:AE004417) (248 aa) fasta scores: E(): 0%2C 44.3%25 id in 244 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004417;product=conserved hypothetical protein;protein_id=CAL20672.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2307721	2307939	.	+	.	ID=id4741;Note=Pfam match to entry PF02231 PHP_N%2C PHP domain N-terminal region%2C score 72.50%2C E-value 8.6e-18;gbkey=misc_feature;inference=protein motif:PF02231
AL590842.1	EMBL	gene	2308486	2309046	.	+	.	ID=gene2019;Name=YPO2038;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2038
AL590842.1	EMBL	CDS	2308486	2309046	.	+	0	ID=cds1982;Parent=gene2019;Dbxref=InterPro:IPR020945,InterPro:IPR026269,UniProtKB/TrEMBL:Q7CIA9,NCBI_GP:CAL20673.1;Name=CAL20673.1;Note=Similar to Escherichia coli hypothetical protein YcdY SW:YCDY_ECOLI (P75915) (184 aa) fasta scores: E(): 0%2C65.9%25 id in 182 aa%2C and to Haemophilus influenzae hypothetical protein HI1543 SW:YCDY_HAEIN (P44248) (184 aa) fasta scores: E(): 7.3e-18%2C 42.0%25 id in 188 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL20673.1;transl_table=11
AL590842.1	EMBL	gene	2309500	2310063	.	-	.	ID=gene2020;Name=YPO2039;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2039
AL590842.1	EMBL	CDS	2309500	2310063	.	-	0	ID=cds1983;Parent=gene2020;Dbxref=InterPro:IPR010835,UniProtKB/TrEMBL:Q0WFB7,NCBI_GP:CAL20674.1;Name=CAL20674.1;Note=Similar to Escherichia coli hypothetical protein YceB SW:YCEB_ECOLI (P09995) (186 aa) fasta scores: E(): 0%2C64.7%25 id in 187 aa. C-terminus is similar to Salmonella typhimurium hypothetical protein YceB SW:YCEB_SALTY (P40822) (103 aa) fasta scores: E(): 2.4e-21%2C 66.0%25 id in 103 aa;gbkey=CDS;product=putative lipoprotein;protein_id=CAL20674.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2310004	2310036	.	-	.	ID=id4742;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	ribosome_entry_site	2310069	2310072	.	-	.	ID=id4743;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2310458	2311663	.	-	.	ID=gene2021;Name=YPO2040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2040
AL590842.1	EMBL	CDS	2310458	2311663	.	-	0	ID=cds1984;Parent=gene2021;Dbxref=GOA:Q8ZEW3,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,InterPro:IPR022855,NCBI_GP:CAL20675.1;Name=CAL20675.1;Note=Similar to Escherichia coli hypothetical protein YqjV TR:Q9R7P2 (EMBL:D90743) (412 aa) fasta scores: E(): 0%2C75.9%25 id in 398 aa%2C and to Escherichia coli hypothetical protein YceL SW:YCEL_ECOLI (P77042) (402 aa) fasta scores: E(): 0%2C 75.6%25 id in 398 aa;gbkey=CDS;inference=similar to sequence:INSDC:D90743;product=putative membrane protein;protein_id=CAL20675.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2310497	2310562	.	-	.	ID=id4744;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2310593	2310658	.	-	.	ID=id4745;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2310698	2310763	.	-	.	ID=id4746;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2310776	2310832	.	-	.	ID=id4747;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2310872	2310922	.	-	.	ID=id4748;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2310968	2311033	.	-	.	ID=id4749;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2311094	2311159	.	-	.	ID=id4750;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2311190	2311255	.	-	.	ID=id4751;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2311316	2311366	.	-	.	ID=id4752;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2311559	2311624	.	-	.	ID=id4753;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	ribosome_entry_site	2311950	2311953	.	+	.	ID=id4754;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2311957	2312541	.	+	.	ID=gene2022;Name=rimJ;gbkey=Gene;gene=rimJ;gene_biotype=protein_coding;locus_tag=YPO2041
AL590842.1	EMBL	CDS	2311957	2312541	.	+	0	ID=cds1985;Parent=gene2022;Dbxref=GOA:Q7CIB1,InterPro:IPR000182,InterPro:IPR016181,UniProtKB/TrEMBL:Q7CIB1,NCBI_GP:CAL20676.1;Name=CAL20676.1;Note=Similar to Escherichia coli ribosomal-protein-alanine acetyltransferase RimJ SW:RIMJ_ECOLI (P09454) (194 aa) fasta scores: E(): 0%2C 75.8%25 id in 194 aa%2C and to Vibrio cholerae ribosomal-protein-alanine acetyltransferase VC1309 TR:Q9KSE8 (EMBL:AE004210) (191 aa) fasta scores: E(): 1.4e-30%2C 45.2%25 id in 177 aa;gbkey=CDS;gene=rimJ;inference=similar to sequence:INSDC:AE004210;product=ribosomal-protein-alanine acetyltransferase;protein_id=CAL20676.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2312206	2312442	.	+	.	ID=id4755;Note=Pfam match to entry PF00583 Acetyltransf%2CAcetyltransferase (GNAT) family%2C score 39.80%2C E-value 6.3e-08;gbkey=misc_feature;gene=rimJ;inference=protein motif:PF00583
AL590842.1	EMBL	ribosome_entry_site	2312540	2312544	.	+	.	ID=id4756;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2312549	2314159	.	+	.	ID=gene2023;Name=YPO2042;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2042
AL590842.1	EMBL	CDS	2312549	2314159	.	+	0	ID=cds1986;Parent=gene2023;Dbxref=GOA:Q7CIB2,InterPro:IPR000683,InterPro:IPR007432,InterPro:IPR011991,InterPro:IPR016040,UniProtKB/TrEMBL:Q7CIB2,NCBI_GP:CAL20677.1;Name=CAL20677.1;Note=C-terminal region is similar to Salmonella typhimurium possible virulence factor MviM SW:MVIM_SALTY (P37168) (307 aa) fasta scores: E(): 0%2C 59.7%25 id in 298 aa%2Cand weakly similar to Bacillus subtilis myo-inositol 2-dehydrogenase Idh SW:MI2D_BACSU (P26935) (344 aa) fasta scores: E(): 9.8e-08%2C 23.5%25 id in 306 aa. N-terminal region is similar to Escherichia coli hypothetical protein YceH SW:YCEH_ECOLI (P29217) (215 aa) fasta scores: E(): 0%2C 60.9%25 id in 235 aa;gbkey=CDS;product=putative oxidoreductase;protein_id=CAL20677.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2313257	2313928	.	+	.	ID=id4757;Note=Pfam match to entry PF01408 GFO_IDH_MocA%2COxidoreductase family%2C score 152.10%2C E-value 9.3e-42;gbkey=misc_feature;inference=protein motif:PF01408
AL590842.1	EMBL	gene	2314426	2315961	.	+	.	ID=gene2024;Name=mviN;gbkey=Gene;gene=mviN;gene_biotype=protein_coding;locus_tag=YPO2043
AL590842.1	EMBL	CDS	2314426	2315961	.	+	0	ID=cds1987;Parent=gene2024;Dbxref=GOA:Q7CIB3,InterPro:IPR004268,UniProtKB/TrEMBL:Q7CIB3,NCBI_GP:CAL20678.1;Name=CAL20678.1;Note=Similar to Salmonella typhimurium possible virulence factor protein MviN SW:MVIN_SALTY (P37169) (524 aa) fasta scores: E(): 0%2C 85.1%25 id in 510 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA4562 TR:AAG07950 (EMBL:AE004870) (512 aa) fasta scores: E(): 0%2C 77.2%25 id in 509 aa;gbkey=CDS;gene=mviN;inference=similar to sequence:INSDC:AE004870;product=putative membrane protein;protein_id=CAL20678.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2314501	2314560	.	+	.	ID=id4758;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=mviN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2314696	2314764	.	+	.	ID=id4759;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=mviN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2314807	2314875	.	+	.	ID=id4760;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=mviN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2314894	2314962	.	+	.	ID=id4761;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=mviN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2314975	2315034	.	+	.	ID=id4762;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=mviN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2315134	2315202	.	+	.	ID=id4763;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=mviN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2315245	2315313	.	+	.	ID=id4764;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=mviN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2315350	2315409	.	+	.	ID=id4765;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=mviN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2315467	2315535	.	+	.	ID=id4766;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=mviN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2315572	2315640	.	+	.	ID=id4767;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=mviN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2315653	2315712	.	+	.	ID=id4768;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=mviN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2315749	2315817	.	+	.	ID=id4769;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=mviN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2315860	2315928	.	+	.	ID=id4770;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=mviN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2316429	2318102	.	+	.	ID=gene2025;Name=YPO2044;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2044
AL590842.1	EMBL	CDS	2316429	2318102	.	+	0	ID=cds1988;Parent=gene2025;Dbxref=GOA:Q0WFB2,InterPro:IPR005565,InterPro:IPR013686,InterPro:IPR027282,UniProtKB/TrEMBL:Q0WFB2,NCBI_GP:CAL20679.1;Name=CAL20679.1;Note=Similar to Serratia marcescens hemolysin activator protein precursor ShlB SW:HLYB_SERMA (P15321) (557 aa) fasta scores: E(): 0%2C 44.0%25 id in 555 aa%2C and to Proteus mirabilis hemolysin activator protein precursor HpmB SW:HLYB_PROMI (P16465) (561 aa) fasta scores: E(): 0%2C 41.5%25 id in 561 aa. CDS is similar to YPO3720 (590 aa) fasta scores: E(): 0%2C 41.9%25 id in 568 aa overlap.;gbkey=CDS;product=putative hemolysin activator protein;protein_id=CAL20679.1;transl_table=11
AL590842.1	EMBL	gene	2318132	2322862	.	+	.	ID=gene2026;Name=YPO2045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2045
AL590842.1	EMBL	CDS	2318132	2322862	.	+	0	ID=cds1989;Parent=gene2026;Dbxref=InterPro:IPR008638,InterPro:IPR011050,InterPro:IPR012334,InterPro:IPR025157,UniProtKB/TrEMBL:Q7CIB4,NCBI_GP:CAL20680.1;Name=CAL20680.1;Note=Similar to Serratia marcescens hemolysin ShlA SW:HLYA_SERMA (P15320) (1608 aa) fasta scores: E(): 0%2C32.2%25 id in 1601 aa%2C and to Edwardsiella tarda hemolysin EthA TR:O32608 (EMBL:D89876) (1594 aa) fasta scores: E(): 0%2C 29.2%25 id in 1614 aa. CDS is similar to YPO3721 (1635 aa) fasta scores: E(): 0%2C 30.8%25 id in 1621 aa overlap.;gbkey=CDS;inference=similar to sequence:INSDC:D89876;product=putative hemolysin;protein_id=CAL20680.1;transl_table=11
AL590842.1	EMBL	gene	2323093	2324823	.	-	.	ID=gene2027;Name=argS;gbkey=Gene;gene=argS;gene_biotype=protein_coding;locus_tag=YPO2046
AL590842.1	EMBL	CDS	2323093	2324823	.	-	0	ID=cds1990;Parent=gene2027;Dbxref=GOA:Q8ZEV7,InterPro:IPR001278,InterPro:IPR001412,InterPro:IPR005148,InterPro:IPR008909,InterPro:IPR009080,InterPro:IPR014729,NCBI_GP:CAL20681.1;Name=CAL20681.1;Note=Similar to Escherichia coli arginyl-tRNA synthetase ArgS SW:SYR_ECOLI (P11875) (577 aa) fasta scores: E(): 0%2C82.8%25 id in 577 aa%2C and to Vibrio cholerae arginyl-tRNA synthetase VC2074 TR:Q9KQC6 (EMBL:AE004281) (599 aa) fasta scores: E(): 0%2C 71.4%25 id in 577 aa;gbkey=CDS;gene=argS;inference=similar to sequence:INSDC:AE004281;product=arginyl-tRNA synthetase;protein_id=CAL20681.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2323096	2324823	.	-	.	ID=id4771;Note=Pfam match to entry PF00750 tRNA-synt_1d%2C tRNA synthetases class I (R)%2C score 1040.30%2C E-value 0;gbkey=misc_feature;gene=argS;inference=protein motif:PF00750
AL590842.1	EMBL	sequence_feature	2324425	2324460	.	-	.	ID=id4772;Note=PS00178 Aminoacyl-transfer RNA synthetases class-I signature.;gbkey=misc_feature;gene=argS;inference=protein motif:ProSite:PS00178
AL590842.1	EMBL	ribosome_entry_site	2325436	2325439	.	+	.	ID=id4773;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2325446	2326021	.	+	.	ID=gene2028;Name=YPO2047;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2047
AL590842.1	EMBL	CDS	2325446	2326021	.	+	0	ID=cds1991;Parent=gene2028;Dbxref=InterPro:IPR010393,InterPro:IPR029068,UniProtKB/TrEMBL:Q7CIB5,NCBI_GP:CAL20682.1;Name=CAL20682.1;Note=Similar to Escherichia coli hypothetical protein YecM SW:YECM_ECOLI (P52007) (188 aa) fasta scores: E(): 0%2C59.0%25 id in 183 aa%2C and to Haemophilus influenzae hypothetical protein HI1582 SW:YECM_HAEIN (P44262) (191 aa) fasta scores: E(): 5.3e-21%2C 35.3%25 id in 187 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL20682.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2326246	2326249	.	+	.	ID=id4774;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2326253	2327017	.	+	.	ID=gene2029;Name=cutC;gbkey=Gene;gene=cutC;gene_biotype=protein_coding;locus_tag=YPO2048
AL590842.1	EMBL	CDS	2326253	2327017	.	+	0	ID=cds1992;Parent=gene2029;Dbxref=GOA:Q8ZEV5,InterPro:IPR005627,InterPro:IPR023648,NCBI_GP:CAL20683.1;Name=CAL20683.1;Note=Similar to Escherichia coli copper homeostasis protein CutC SW:CUTC_ECOLI (P46719) (248 aa) fasta scores: E(): 0%2C 56.6%25 id in 244 aa%2C and to Homo sapiens hypothetical protein CGI-32 TR:Q9Y321 (EMBL:AF132966) (273 aa) fasta scores: E(): 0%2C 41.9%25 id in 241 aa;gbkey=CDS;gene=cutC;inference=similar to sequence:INSDC:AF132966;product=putative copper homeostasis protein;protein_id=CAL20683.1;transl_table=11
AL590842.1	EMBL	gene	2327210	2328181	.	-	.	ID=gene2030;Name=YPO2049;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2049
AL590842.1	EMBL	CDS	2327210	2328181	.	-	0	ID=cds1993;Parent=gene2030;Dbxref=GOA:Q7CIB6,InterPro:IPR010017,InterPro:IPR027555,InterPro:IPR029063,NCBI_GP:CAL20684.1;Name=CAL20684.1;Note=Similar to Escherichia coli hypothetical protein YecP SW:YECP_ECOLI (P76291) (323 aa) fasta scores: E(): 0%2C77.1%25 id in 323 aa%2C and to Haemophilus influenzae hypothetical protein HI1351 SW:YECP_HAEIN (P44167) (321 aa) fasta scores: E(): 0%2C 63.4%25 id in 322 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL20684.1;transl_table=11
AL590842.1	EMBL	gene	2328178	2328981	.	-	.	ID=gene2031;Name=YPO2050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2050
AL590842.1	EMBL	CDS	2328178	2328981	.	-	0	ID=cds1994;Parent=gene2031;Dbxref=GOA:Q7CIB7,InterPro:IPR005271,InterPro:IPR029063,NCBI_GP:CAL20685.1;Name=CAL20685.1;Note=Similar to Escherichia coli hypothetical protein YecO SW:YECO_ECOLI (P76290) (247 aa) fasta scores: E(): 0%2C83.6%25 id in 244 aa%2C and to Vibrio cholerae hypothetical protein VC1164 TR:Q9KSU2 (EMBL:AE004196) (246 aa) fasta scores: E(): 0%2C 72.1%25 id in 244 aa. CDS appears to contain an extended N-terminal region compared to other homologues;gbkey=CDS;inference=similar to sequence:INSDC:AE004196;product=conserved hypothetical protein;protein_id=CAL20685.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2328186	2328190	.	-	.	ID=id4775;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2329172	2329567	.	-	.	ID=gene2032;Name=YPO2051;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2051
AL590842.1	EMBL	CDS	2329172	2329567	.	-	0	ID=cds1995;Parent=gene2032;Dbxref=InterPro:IPR001129,InterPro:IPR023352,UniProtKB/TrEMBL:Q7CIB8,NCBI_GP:CAL20686.1;Name=CAL20686.1;Note=Similar to Escherichia coli hypothetical protein YecN SW:YECN_ECOLI (P76289) (131 aa) fasta scores: E(): 0%2C70.0%25 id in 130 aa%2C and weak similarity to Homo sapiens microsomal glutathione s-transferase 2 MGST2 SW:GST2_HUMAN (Q99735) (147 aa) fasta scores: E(): 0.35%2C 29.2%25 id in 120 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL20686.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2329196	2329252	.	-	.	ID=id4776;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2329292	2329357	.	-	.	ID=id4777;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2329373	2329438	.	-	.	ID=id4778;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2329502	2329552	.	-	.	ID=id4779;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	ribosome_entry_site	2329574	2329577	.	-	.	ID=id4780;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2329747	2330562	.	-	.	ID=gene2033;Name=YPO2052;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2052
AL590842.1	EMBL	CDS	2329747	2330562	.	-	0	ID=cds1996;Parent=gene2033;Dbxref=InterPro:IPR002763,UniProtKB/TrEMBL:Q7CIB9,NCBI_GP:CAL20687.1;Name=CAL20687.1;Note=Similar to Escherichia coli hypothetical protein YecE SW:YECE_ECOLI (P37348) (272 aa) fasta scores: E(): 0%2C60.1%25 id in 271 aa%2C and to Vibrio cholerae hypothetical protein VC1165 vc1165 TR:Q9KSU1 (EMBL:AE004196) (289 aa) fasta scores: E(): 0%2C 50.7%25 id in 280 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004196;product=conserved hypothetical protein;protein_id=CAL20687.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2329801	2330523	.	-	.	ID=id4781;Note=Pfam match to entry PF01904 DUF72%2C Protein of unknown function DUF72%2C score -54.40%2C E-value 0.00045;gbkey=misc_feature;inference=protein motif:PF01904
AL590842.1	EMBL	gene	2331620	2333416	.	+	.	ID=gene2034;Name=aspS;gbkey=Gene;gene=aspS;gene_biotype=protein_coding;gene_synonym=tls;locus_tag=YPO2053
AL590842.1	EMBL	CDS	2331620	2333416	.	+	0	ID=cds1997;Parent=gene2034;Dbxref=GOA:Q8ZEV0,InterPro:IPR002312,InterPro:IPR004115,InterPro:IPR004364,InterPro:IPR004365,InterPro:IPR004524,InterPro:IPR006195,InterPro:IPR012340,InterPro:IPR018150,InterPro:IPR029351,NCBI_GP:CAL20688.1;Name=CAL20688.1;Note=Similar to Escherichia coli aspartyl-tRNA synthetase AspS SW:SYD_ECOLI (P21889) (590 aa) fasta scores: E(): 0%2C82.4%25 id in 586 aa%2C and to Vibrio cholerae aspartyl-tRNA synthetase VC1166 TR:Q9KSU0 (EMBL:AE004196) (591 aa) fasta scores: E(): 0%2C 76.6%25 id in 591 aa;gbkey=CDS;gene=aspS;inference=similar to sequence:INSDC:AE004196;product=aspartyl-tRNA synthetase;protein_id=CAL20688.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2331671	2331925	.	+	.	ID=id4782;Note=Pfam match to entry PF01336 tRNA_anti%2C tRNA synthetase anti-codon binding domain%2C score 86.00%2C E-value 7.4e-22;gbkey=misc_feature;gene=aspS;inference=protein motif:PF01336
AL590842.1	EMBL	sequence_feature	2331968	2333296	.	+	.	ID=id4783;Note=Pfam match to entry PF00152 tRNA-synt_2%2C tRNA synthetases class II (D%2C K and N)%2C score 69.60%2C E-value 6.8e-17;gbkey=misc_feature;gene=aspS;inference=protein motif:PF00152
AL590842.1	EMBL	sequence_feature	2332265	2332318	.	+	.	ID=id4784;Note=PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.;gbkey=misc_feature;gene=aspS;inference=protein motif:ProSite:PS00179
AL590842.1	EMBL	sequence_feature	2333213	2333242	.	+	.	ID=id4785;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.;gbkey=misc_feature;gene=aspS;inference=protein motif:ProSite:PS00339
AL590842.1	EMBL	gene	2333416	2333859	.	+	.	ID=gene2035;Name=ntpA;gbkey=Gene;gene=ntpA;gene_biotype=protein_coding;gene_synonym=nudB;locus_tag=YPO2054
AL590842.1	EMBL	CDS	2333416	2333859	.	+	0	ID=cds1998;Parent=gene2035;Dbxref=GOA:Q7CIC0,InterPro:IPR000086,InterPro:IPR003564,InterPro:IPR015797,InterPro:IPR020084,UniProtKB/TrEMBL:Q7CIC0,NCBI_GP:CAL20689.1;Name=CAL20689.1;Note=Similar to Escherichia coli dATP pyrophosphohydrolase NudB SW:NUDB_ECOLI (P24236) (150 aa) fasta scores: E(): 0%2C 73.9%25 id in 142 aa%2C and to Haemophilus influenzae dATP pyrophosphohydrolase NudB SW:NUDB_HAEIN (P44635) (158 aa) fasta scores: E(): 2.6e-29%2C52.1%25 id in 144 aa;gbkey=CDS;gene=ntpA;product=putative dATP pyrophosphohydrolase;protein_id=CAL20689.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2333428	2333850	.	+	.	ID=id4786;Note=Pfam match to entry PF00293 mutT%2C Bacterial mutT protein%2C score 77.10%2C E-value 3.6e-19;gbkey=misc_feature;gene=ntpA;inference=protein motif:PF00293
AL590842.1	EMBL	sequence_feature	2333527	2333586	.	+	.	ID=id4787;Note=PS00893 mutT domain signature.;gbkey=misc_feature;gene=ntpA;inference=protein motif:ProSite:PS00893
AL590842.1	EMBL	gene	2333917	2334660	.	+	.	ID=gene2036;Name=YPO2055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2055
AL590842.1	EMBL	CDS	2333917	2334660	.	+	0	ID=cds1999;Parent=gene2036;Dbxref=GOA:Q8ZEU8,InterPro:IPR002876,InterPro:IPR017856,InterPro:IPR026563,InterPro:IPR026564,InterPro:IPR029072,NCBI_GP:CAL20690.1;Name=CAL20690.1;Note=Similar to Escherichia coli hypothetical protein YebC SW:YEBC_ECOLI (P24237) (246 aa) fasta scores: E(): 0%2C84.6%25 id in 247 aa%2C and to Haemophilus influenzae hypothetical protein HI0315 SW:YEBC_HAEIN (P44634) (246 aa) fasta scores: E(): 0%2C 73.3%25 id in 247 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL20690.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2333929	2334630	.	+	.	ID=id4788;Note=Pfam match to entry PF01709 DUF28%2C Domain of unknown function DUF28%2C score 478.40%2C E-value 5.7e-140;gbkey=misc_feature;inference=protein motif:PF01709
AL590842.1	EMBL	gene	2334869	2335390	.	+	.	ID=gene2037;Name=ruvC;gbkey=Gene;gene=ruvC;gene_biotype=protein_coding;locus_tag=YPO2056
AL590842.1	EMBL	CDS	2334869	2335390	.	+	0	ID=cds2000;Parent=gene2037;Dbxref=GOA:Q8ZEU7,InterPro:IPR002176,InterPro:IPR012337,InterPro:IPR020563,NCBI_GP:CAL20691.1;Name=CAL20691.1;Note=Similar to Escherichia coli crossover junction endodeoxyribonuclease RuvC SW:RUVC_ECOLI (P24239) (172 aa) fasta scores: E(): 0%2C 83.7%25 id in 172 aa%2C and to Vibrio cholerae crossover junction endodeoxyribonuclease RuvC TR:Q9KR00 (EMBL:AE004260) (173 aa) fasta scores: E(): 0%2C71.7%25 id in 173 aa;gbkey=CDS;gene=ruvC;inference=similar to sequence:INSDC:AE004260;product=crossover junction endodeoxyribonuclease;protein_id=CAL20691.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2334878	2335318	.	+	.	ID=id4789;Note=Pfam match to entry PF02075 RuvC%2C Crossover junction endodeoxyribonuclease RuvC%2C score 323.50%2C E-value 2.4e-93;gbkey=misc_feature;gene=ruvC;inference=protein motif:PF02075
AL590842.1	EMBL	sequence_feature	2335205	2335309	.	+	.	ID=id4790;Note=PS01321 Crossover junction endodeoxyribonuclease ruvC signature.;gbkey=misc_feature;gene=ruvC;inference=protein motif:ProSite:PS01321
AL590842.1	EMBL	ribosome_entry_site	2335659	2335663	.	+	.	ID=id4791;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2335673	2336287	.	+	.	ID=gene2038;Name=ruvA;gbkey=Gene;gene=ruvA;gene_biotype=protein_coding;locus_tag=YPO2057
AL590842.1	EMBL	CDS	2335673	2336287	.	+	0	ID=cds2001;Parent=gene2038;Dbxref=GOA:Q8ZEU6,InterPro:IPR000085,InterPro:IPR003583,InterPro:IPR010994,InterPro:IPR011114,InterPro:IPR012340,InterPro:IPR013849,NCBI_GP:CAL20692.1;Name=CAL20692.1;Note=Similar to Escherichia coli Holliday junction DNA helicase RuvA SW:RUVA_ECOLI (P08576) (203 aa) fasta scores: E(): 0%2C 79.0%25 id in 205 aa%2C and to Vibrio cholerae Holliday junction DNA helicase RuvA TR:Q9KR01 (EMBL:AE004260) (204 aa) fasta scores: E(): 0%2C 64.5%25 id in 203 aa;gbkey=CDS;gene=ruvA;inference=similar to sequence:INSDC:AE004260;product=Holliday junction DNA helicase;protein_id=CAL20692.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2335676	2335870	.	+	.	ID=id4792;Note=Pfam match to entry PF01330 RuvA%2C Bacterial DNA recombination protein%2C RuvA%2C score 112.00%2C E-value 1.1e-29;gbkey=misc_feature;gene=ruvA;inference=protein motif:PF01330
AL590842.1	EMBL	gene	2336449	2337453	.	+	.	ID=gene2039;Name=ruvB;gbkey=Gene;gene=ruvB;gene_biotype=protein_coding;locus_tag=YPO2058
AL590842.1	EMBL	CDS	2336449	2337453	.	+	0	ID=cds2002;Parent=gene2039;Dbxref=GOA:Q8ZEU5,InterPro:IPR003593,InterPro:IPR004605,InterPro:IPR008823,InterPro:IPR008824,InterPro:IPR011991,InterPro:IPR027417,NCBI_GP:CAL20693.1;Name=CAL20693.1;Note=Similar to Escherichia coli Holliday junction DNA helicase RuvB SW:RUVB_ECOLI (P08577) (336 aa) fasta scores: E(): 0%2C 84.7%25 id in 334 aa%2C and to Haemophilus influenzae Holliday junction DNA helicase RuvB SW:RUVB_HAEIN (P44631) (335 aa) fasta scores: E(): 0%2C 80.1%25 id in 332 aa;gbkey=CDS;gene=ruvB;product=Holliday junction DNA helicase;protein_id=CAL20693.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2336617	2337168	.	+	.	ID=id4793;Note=Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA)%2C score 121.40%2CE-value 1.7e-32;gbkey=misc_feature;gene=ruvB;inference=protein motif:PF00004
AL590842.1	EMBL	sequence_feature	2336632	2336655	.	+	.	ID=id4794;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ruvB;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2337508	2338293	.	-	.	ID=gene2040;Name=znuB;gbkey=Gene;gene=znuB;gene_biotype=protein_coding;locus_tag=YPO2059
AL590842.1	EMBL	CDS	2337508	2338293	.	-	0	ID=cds2003;Parent=gene2040;Dbxref=GOA:Q7CIC1,InterPro:IPR001626,InterPro:IPR029022,UniProtKB/TrEMBL:Q7CIC1,NCBI_GP:CAL20694.1;Name=CAL20694.1;Note=Similar to Escherichia coli high-affinity zinc uptake system membrane protein ZnuB SW:ZNUB_ECOLI (P39832) (261 aa) fasta scores: E(): 0%2C 82.6%25 id in 258 aa%2C and to Haemophilus influenzae high-affinity zinc uptake system membrane protein ZnuB SW:ZNUB_HAEIN (P44691) (261 aa) fasta scores: E(): 0%2C 60.0%25 id in 260 aa;gbkey=CDS;gene=znuB;inference=protein motif:TMHMM:2.0;product=high-affinity zinc uptake system membrane protein;protein_id=CAL20694.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2337520	2338293	.	-	.	ID=id4795;Note=Pfam match to entry PF00950 ABC-3%2C ABC 3 transport family%2C score 391.50%2C E-value 8e-114;gbkey=misc_feature;gene=znuB;inference=protein motif:PF00950
AL590842.1	EMBL	sequence_feature	2337526	2337576	.	-	.	ID=id4796;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=znuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2337589	2337654	.	-	.	ID=id4797;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=znuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2337718	2337783	.	-	.	ID=id4798;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=znuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2337868	2337933	.	-	.	ID=id4799;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=znuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2337973	2338038	.	-	.	ID=id4800;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=znuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2338084	2338149	.	-	.	ID=id4801;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=znuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2338213	2338278	.	-	.	ID=id4802;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=znuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2338290	2339051	.	-	.	ID=gene2041;Name=znuC;gbkey=Gene;gene=znuC;gene_biotype=protein_coding;locus_tag=YPO2060
AL590842.1	EMBL	CDS	2338290	2339051	.	-	0	ID=cds2004;Parent=gene2041;Dbxref=GOA:Q7CIC2,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017882,InterPro:IPR027417,NCBI_GP:CAL20695.1;Name=CAL20695.1;Note=Similar to Escherichia coli high-affinity zinc uptake system ATP-binding protein ZnuC SW:ZNUC_ECOLI (P52648) (251 aa) fasta scores: E(): 0%2C 77.2%25 id in 250 aa%2Cand to Pseudomonas aeruginosa zinc transport protein ZnuC TR:AAG08885 (EMBL:AE004962) (269 aa) fasta scores: E(): 0%2C60.2%25 id in 246 aa;gbkey=CDS;gene=znuC;inference=similar to sequence:INSDC:AE004962;product=high-affinity zinc uptake system ATP-binding protein;protein_id=CAL20695.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2338458	2338961	.	-	.	ID=id4803;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 170.20%2C E-value 3.6e-47;gbkey=misc_feature;gene=znuC;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2338917	2338940	.	-	.	ID=id4804;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=znuC;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	ribosome_entry_site	2338303	2338306	.	-	.	ID=id4805;gbkey=regulatory;gene=znuC;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2339124	2340080	.	+	.	ID=gene2042;Name=znuA;gbkey=Gene;gene=znuA;gene_biotype=protein_coding;locus_tag=YPO2061
AL590842.1	EMBL	CDS	2339124	2340080	.	+	0	ID=cds2005;Parent=gene2042;Dbxref=GOA:Q8ZEU2,InterPro:IPR006127,NCBI_GP:CAL20696.1;Name=CAL20696.1;Note=Similar to Escherichia coli high-affinity zinc uptake system protein ZnuA precursor SW:ZNUA_ECOLI (P39172) (328 aa) fasta scores: E(): 0%2C 63.5%25 id in 318 aa%2C and to Haemophilus ducreyi high-affinity zinc uptake system protein ZnuA TR:Q9RPX0 (EMBL:AF141971) (310 aa) fasta scores: E(): 0%2C 43.5%25 id in 310 aa;gbkey=CDS;gene=znuA;inference=similar to sequence:INSDC:AF141971;product=exported high-affinity zinc uptake system protein;protein_id=CAL20696.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2339154	2340077	.	+	.	ID=id4806;Note=Pfam match to entry PF01297 Lipoprotein_4%2C Adhesion lipoprotein%2C score 261.80%2C E-value 9.2e-75;gbkey=misc_feature;gene=znuA;inference=protein motif:PF01297
AL590842.1	EMBL	gene	2340164	2341417	.	+	.	ID=gene2043;Name=YPO2062;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2062
AL590842.1	EMBL	CDS	2340164	2341417	.	+	0	ID=cds2006;Parent=gene2043;Dbxref=InterPro:IPR007340,InterPro:IPR011055,InterPro:IPR016047,InterPro:IPR018392,UniProtKB/TrEMBL:Q0WF94,NCBI_GP:CAL20697.1;Name=CAL20697.1;Note=Similar to Escherichia coli hypothetical protein YebA SW:YEBA_ECOLI (P24204) (419 aa) fasta scores: E(): 0%2C72.8%25 id in 419 aa%2C and to Vibrio cholerae hypothetical protein VC0503 vc0503 TR:Q9KUL5 (EMBL:AE004136) (426 aa) fasta scores: E(): 0%2C 36.2%25 id in 412 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004136;product=putative M23/M37 peptidase-family protein;protein_id=CAL20697.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2341076	2341324	.	+	.	ID=id4807;Note=Pfam match to entry PF01551 Peptidase_M37%2C Peptidase family M23/M37%2C score 133.10%2C E-value 4.9e-36;gbkey=misc_feature;inference=protein motif:PF01551
AL590842.1	EMBL	gene	2341684	2342646	.	+	.	ID=gene2044;Name=msbB;gbkey=Gene;gene=msbB;gene_biotype=protein_coding;locus_tag=YPO2063
AL590842.1	EMBL	CDS	2341684	2342646	.	+	0	ID=cds2007;Parent=gene2044;Dbxref=GOA:Q7CIC3,InterPro:IPR004960,InterPro:IPR011921,UniProtKB/TrEMBL:Q7CIC3,NCBI_GP:CAL20698.1;Name=CAL20698.1;Note=Similar to Escherichia coli lipid A biosynthesis (Kdo)2-(lauroyl)-lipid IVA acyltransferase MsbB SW:MSBB_ECOLI (P24205) (323 aa) fasta scores: E(): 0%2C 65.0%25 id in 320 aa%2C and to Salmonella typhimurium lipid A acyltransferase MsbB TR:Q9ZI82 (EMBL:AF039020) (323 aa) fasta scores: E(): 0%2C 65.0%25 id in 320 aa;gbkey=CDS;gene=msbB;inference=similar to sequence:INSDC:AF039020;product=lipid A biosynthesis acyltransferase;protein_id=CAL20698.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2341753	2341806	.	+	.	ID=id4808;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=msbB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2342991	2344433	.	-	.	ID=gene2045;Name=pykA;gbkey=Gene;gene=pykA;gene_biotype=protein_coding;locus_tag=YPO2064
AL590842.1	EMBL	CDS	2342991	2344433	.	-	0	ID=cds2008;Parent=gene2045;Dbxref=GOA:Q7CIC4,InterPro:IPR001697,InterPro:IPR011037,InterPro:IPR015793,InterPro:IPR015794,InterPro:IPR015795,InterPro:IPR015806,InterPro:IPR015813,InterPro:IPR018209,UniProtKB/TrEMBL:Q7CIC4,NCBI_GP:CAL20699.1;Name=CAL20699.1;Note=Similar to Escherichia coli pyruvate kinase II PykA SW:KPY2_ECOLI (P21599) (479 aa) fasta scores: E(): 0%2C 89.6%25 id in 479 aa%2C and to Haemophilus influenzae pyruvate kinase PykA SW:KPYK_HAEIN (P43924) (477 aa) fasta scores: E(): 0%2C75.4%25 id in 479 aa;gbkey=CDS;gene=pykA;product=pyruvate kinase II;protein_id=CAL20699.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2342997	2344418	.	-	.	ID=id4809;Note=Pfam match to entry PF00224 PK%2C Pyruvate kinase%2Cscore 930.30%2C E-value 5.4e-276;gbkey=misc_feature;gene=pykA;inference=protein motif:PF00224
AL590842.1	EMBL	sequence_feature	2343744	2343782	.	-	.	ID=id4810;Note=PS00110 Pyruvate kinase active site signature.;gbkey=misc_feature;gene=pykA;inference=protein motif:ProSite:PS00110
AL590842.1	EMBL	ribosome_entry_site	2344440	2344443	.	-	.	ID=id4811;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2344763	2345632	.	-	.	ID=gene2046;Name=hexR;gbkey=Gene;gene=hexR;gene_biotype=protein_coding;locus_tag=YPO2065
AL590842.1	EMBL	CDS	2344763	2345632	.	-	0	ID=cds2009;Parent=gene2046;Dbxref=GOA:Q0WF91,InterPro:IPR000281,InterPro:IPR001347,InterPro:IPR009057,InterPro:IPR011991,UniProtKB/TrEMBL:Q0WF91,NCBI_GP:CAL20700.1;Name=CAL20700.1;Note=Similar to Escherichia coli hex regulon repressor HexR SW:HEXR_ECOLI (P46118) (289 aa) fasta scores: E(): 0%2C81.5%25 id in 287 aa%2C and to Vibrio cholerae hypothetical protein VC1148 TR:Q9KSV8 (EMBL:AE004195) (284 aa) fasta scores: E(): 0%2C 76.8%25 id in 284 aa;gbkey=CDS;gene=hexR;inference=similar to sequence:INSDC:AE004195;product=hex regulon repressor;protein_id=CAL20700.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2344865	2345269	.	-	.	ID=id4812;Note=Pfam match to entry PF01380 SIS%2C SIS domain%2C score 119.60%2C E-value 5.7e-32;gbkey=misc_feature;gene=hexR;inference=protein motif:PF01380
AL590842.1	EMBL	sequence_feature	2345315	2345632	.	-	.	ID=id4813;Note=Pfam match to entry PF01418 HTH_6%2C Helix-turn-helix domain%2C rpiR family%2C score 170.60%2C E-value 2.6e-47;gbkey=misc_feature;gene=hexR;inference=protein motif:PF01418
AL590842.1	EMBL	sequence_feature	2345465	2345530	.	-	.	ID=id4814;Note=Predicted helix-turn-helix motif with score 1685 (+4.93 SD) at aa 87-108%2C sequence SSIATLAKMANVSEPTVNRFCR;gbkey=misc_feature;gene=hexR
AL590842.1	EMBL	ribosome_entry_site	2345974	2345978	.	+	.	ID=id4815;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2345985	2347469	.	+	.	ID=gene2047;Name=zwf;gbkey=Gene;gene=zwf;gene_biotype=protein_coding;locus_tag=YPO2066
AL590842.1	EMBL	CDS	2345985	2347469	.	+	0	ID=cds2010;Parent=gene2047;Dbxref=GOA:Q0WF90,InterPro:IPR001282,InterPro:IPR016040,InterPro:IPR019796,InterPro:IPR022674,InterPro:IPR022675,UniProtKB/TrEMBL:Q0WF90,NCBI_GP:CAL20701.1;Name=CAL20701.1;Note=Similar to Escherichia coli glucose-6-phosphate 1-dehydrogenase Zwf SW:G6PD_ECOLI (P22992) (491 aa) fasta scores: E(): 0%2C 84.5%25 id in 491 aa%2C and to Erwinia chrysanthemi glucose-6-phosphate 1-dehydrogenase Zwf SW:G6PD_ERWCH (P37986) (491 aa) fasta scores: E(): 0%2C 87.8%25 id in 491 aa;gbkey=CDS;gene=zwf;product=glucose-6-phosphate 1-dehydrogenase;protein_id=CAL20701.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2346030	2347412	.	+	.	ID=id4816;Note=Pfam match to entry PF00479 G6PD%2CGlucose-6-phosphate dehydrogenase%2C score 953.40%2C E-value 0;gbkey=misc_feature;gene=zwf;inference=protein motif:PF00479
AL590842.1	EMBL	sequence_feature	2346519	2346539	.	+	.	ID=id4817;Note=PS00069 Glucose-6-phosphate dehydrogenase active site.;gbkey=misc_feature;gene=zwf;inference=protein motif:ProSite:PS00069
AL590842.1	EMBL	ribosome_entry_site	2347697	2347700	.	+	.	ID=id4818;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2347711	2348352	.	+	.	ID=gene2048;Name=eda;gbkey=Gene;gene=eda;gene_biotype=protein_coding;gene_synonym=hga,kdgA;locus_tag=YPO2067
AL590842.1	EMBL	CDS	2347711	2348352	.	+	0	ID=cds2011;Parent=gene2048;Dbxref=GOA:Q7CIC5,InterPro:IPR000887,InterPro:IPR013785,UniProtKB/TrEMBL:Q7CIC5,NCBI_GP:CAL20702.1;Name=CAL20702.1;Note=Similar to Escherichia coli KHG/KDPG aldolase Eda SW:ALKH_ECOLI (P10177) (213 aa) fasta scores: E(): 0%2C 87.7%25 id in 211 aa%2C and to Erwinia chrysanthemi khg/kdpg aldolase [includes: 4-hydroxy-2-oxoglutarate aldolase Eda SW:ALKH_ERWCH (P38448) (213 aa) fasta scores: E(): 0%2C 85.0%25 id in 213 aa;gbkey=CDS;gene=eda;product=KHG/KDPG aldolase;protein_id=CAL20702.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2347732	2348319	.	+	.	ID=id4819;Note=Pfam match to entry PF01081 Aldolase%2C KDPG and KHG aldolase%2C score 450.20%2C E-value 1.7e-131;gbkey=misc_feature;gene=eda;inference=protein motif:PF01081
AL590842.1	EMBL	sequence_feature	2347828	2347857	.	+	.	ID=id4820;Note=PS00159 KDPG and KHG aldolases active site.;gbkey=misc_feature;gene=eda;inference=protein motif:ProSite:PS00159
AL590842.1	EMBL	sequence_feature	2348092	2348133	.	+	.	ID=id4821;Note=PS00160 KDPG and KHG aldolases Schiff-base forming residue.;gbkey=misc_feature;gene=eda;inference=protein motif:ProSite:PS00160
AL590842.1	EMBL	gene	2349046	2349510	.	+	.	ID=gene2049;Name=YPO2068;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2068
AL590842.1	EMBL	CDS	2349046	2349510	.	+	0	ID=cds2012;Parent=gene2049;Dbxref=GOA:Q7CIC6,InterPro:IPR000390,InterPro:IPR023740,NCBI_GP:CAL20703.1;Name=CAL20703.1;Note=Similar to Escherichia coli hypothetical kDa protein YdgF SW:YDGF_ECOLI (P77412) (121 aa) fasta scores: E(): 8.3e-25%2C 68.2%25 id in 110 aa%2C and to Pseudomonas aeruginosa probable drug efflux transporter PA1541 TR:AAG04930 (EMBL:AE004582) (122 aa) fasta scores: E(): 7.2e-19%2C 55.3%25 id in 114 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004582;product=putative integral membrane protein;protein_id=CAL20703.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2349064	2349123	.	+	.	ID=id4822;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2349070	2349348	.	+	.	ID=id4823;Note=Pfam match to entry PF00893 DUF7%2C Integral membrane protein DUF7%2C score 105.60%2C E-value 9.8e-28;gbkey=misc_feature;inference=protein motif:PF00893
AL590842.1	EMBL	sequence_feature	2349166	2349219	.	+	.	ID=id4824;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2349232	2349300	.	+	.	ID=id4825;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2349328	2349381	.	+	.	ID=id4826;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2349530	2349826	.	+	.	ID=gene2050;Name=YPO2069;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2069
AL590842.1	EMBL	CDS	2349530	2349826	.	+	0	ID=cds2013;Parent=gene2050;Dbxref=GOA:Q0WF87,InterPro:IPR000390,InterPro:IPR023737,NCBI_GP:CAL20704.1;Name=CAL20704.1;Note=Similar to Escherichia coli hypothetical protein YdgE SW:YDGE_ECOLI (P77670) (109 aa) fasta scores: E(): 9.5e-27%2C 78.6%25 id in 98 aa%2C and to Bacillus subtilis multidrug resistance protein EbrB SW:EBRB_BACSU (O31791) (117 aa) fasta scores: E(): 2.8e-09%2C 38.8%25 id in 98 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative integral membrane protein;protein_id=CAL20704.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2349530	2349793	.	+	.	ID=id4827;Note=Pfam match to entry PF00893 DUF7%2C Integral membrane protein DUF7%2C score 113.10%2C E-value 5.3e-30;gbkey=misc_feature;inference=protein motif:PF00893
AL590842.1	EMBL	sequence_feature	2349602	2349655	.	+	.	ID=id4828;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2349683	2349751	.	+	.	ID=id4829;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2349770	2349814	.	+	.	ID=id4830;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2349958	2350302	.	-	.	ID=gene2051;Name=YPO2070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2070
AL590842.1	EMBL	CDS	2349958	2350302	.	-	0	ID=cds2014;Parent=gene2051;Dbxref=InterPro:IPR006175,InterPro:IPR013813,InterPro:IPR019897,UniProtKB/TrEMBL:Q7CIC7,NCBI_GP:CAL20705.1;Name=CAL20705.1;Note=Similar to Escherichia coli hypothetical protein YoaB SW:YOAB_ECOLI (P76258) (114 aa) fasta scores: E(): 8.4e-33%2C 72.8%25 id in 114 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA5303 TR:AAG08688 (EMBL:AE004943) (117 aa) fasta scores: E(): 7.2e-18%2C 46.6%25 id in 116 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004943;product=conserved hypothetical protein;protein_id=CAL20705.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2349961	2350299	.	-	.	ID=id4831;Note=Pfam match to entry PF01042 UPF0076%2C Domain of unknown function UPF0076%2C score 135.00%2C E-value 1.3e-36;gbkey=misc_feature;inference=protein motif:PF01042
AL590842.1	EMBL	sequence_feature	2349979	2350035	.	-	.	ID=id4832;Note=PS01094 Uncharacterized protein family UPF0076 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01094
AL590842.1	EMBL	ribosome_entry_site	2350307	2350311	.	-	.	ID=id4833;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2350433	2352337	.	+	.	ID=gene2052;Name=YPO2071;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2071
AL590842.1	EMBL	CDS	2350433	2352337	.	+	0	ID=cds2015;Parent=gene2052;Dbxref=GOA:Q7CIC8,InterPro:IPR006555,InterPro:IPR006935,InterPro:IPR010614,InterPro:IPR014001,InterPro:IPR014013,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CIC8,NCBI_GP:CAL20706.1;Name=CAL20706.1;Note=Similar to Escherichia coli probable ATP-dependent helicase YoaA SW:YOAA_ECOLI (P76257) (636 aa) fasta scores: E(): 0%2C 79.6%25 id in 628 aa%2C and to Vibrio cholerae DinG family ATP-dependent helicase VC1990 TR:Q9KQK8 (EMBL:AE004273) (646 aa) fasta scores: E(): 0%2C 64.4%25 id in 630 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004273;product=putative DEAD box family helicase;protein_id=CAL20706.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2350460	2350639	.	+	.	ID=id4834;Note=Pfam match to entry PF00270 DEAD%2C DEAD/DEAH box helicase%2C score 19.70%2C E-value 2.5e-05;gbkey=misc_feature;inference=protein motif:PF00270
AL590842.1	EMBL	sequence_feature	2350565	2350588	.	+	.	ID=id4835;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	ribosome_entry_site	2352400	2352404	.	+	.	ID=id4836;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2352409	2353107	.	+	.	ID=gene2053;Name=YPO2072;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2072
AL590842.1	EMBL	CDS	2352409	2353107	.	+	0	ID=cds2016;Parent=gene2053;Dbxref=GOA:Q0WF84,InterPro:IPR000905,InterPro:IPR022496,UniProtKB/TrEMBL:Q0WF84,NCBI_GP:CAL20707.1;Name=CAL20707.1;Note=Similar to Escherichia coli hypothetical protein YeaZ SW:YEAZ_ECOLI (P76256) (231 aa) fasta scores: E(): 0%2C71.2%25 id in 229 aa%2C and to Vibrio cholerae hypothetical protein VC1989 vc1989 TR:Q9KQK9 (EMBL:AE004273) (237 aa) fasta scores: E(): 0%2C 55.7%25 id in 237 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004273;product=conserved hypothetical protein;protein_id=CAL20707.1;transl_table=11
AL590842.1	EMBL	gene	2353262	2353849	.	+	.	ID=gene2054;Name=YPO2073;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2073
AL590842.1	EMBL	CDS	2353262	2353849	.	+	0	ID=cds2017;Parent=gene2054;Dbxref=GOA:Q0WF83,InterPro:IPR004658,UniProtKB/TrEMBL:Q0WF83,NCBI_GP:CAL20708.1;Name=CAL20708.1;Note=Similar to Escherichia coli hypothetical protein B1806 TR:P76255 (EMBL:AE000275) (193 aa) fasta scores: E(): 0%2C 63.2%25 id in 185 aa%2C and to Escherichia coli outer membrane protein Slp SW:SLP_ECOLI (P37194) (188 aa) fasta scores: E(): 8.8e-20%2C 39.4%25 id in 165 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE000275;product=putative lipoprotein;protein_id=CAL20708.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2353310	2353342	.	+	.	ID=id4837;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	ribosome_entry_site	2354480	2354484	.	+	.	ID=id4838;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2354492	2356180	.	+	.	ID=gene2055;Name=fadD;gbkey=Gene;gene=fadD;gene_biotype=protein_coding;locus_tag=YPO2074
AL590842.1	EMBL	CDS	2354492	2356180	.	+	0	ID=cds2018;Parent=gene2055;Dbxref=GOA:Q8ZES9,InterPro:IPR000873,InterPro:IPR020845,InterPro:IPR025110,NCBI_GP:CAL20709.1;Name=CAL20709.1;Note=Similar to Escherichia coli long-chain-fatty-acid--CoA ligase FadD SW:LCFA_ECOLI (P29212) (561 aa) fasta scores: E(): 0%2C 80.1%25 id in 552 aa%2Cand to Vibrio cholerae long-chain-fatty-acid--CoA ligase VC1985 TR:Q9KQL3 (EMBL:AE004273) (566 aa) fasta scores: E(): 0%2C 73.8%25 id in 553 aa;gbkey=CDS;gene=fadD;inference=similar to sequence:INSDC:AE004273;product=long-chain-fatty-acid-CoA ligase;protein_id=CAL20709.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2354639	2355946	.	+	.	ID=id4839;Note=Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%2C score 121.50%2C E-value 1.6e-32;gbkey=misc_feature;gene=fadD;inference=protein motif:PF00501
AL590842.1	EMBL	sequence_feature	2355122	2355157	.	+	.	ID=id4840;Note=PS00455 Putative AMP-binding domain signature.;gbkey=misc_feature;gene=fadD;inference=protein motif:ProSite:PS00455
AL590842.1	EMBL	gene	2356340	2357461	.	+	.	ID=gene2056;Name=rnd;gbkey=Gene;gene=rnd;gene_biotype=protein_coding;locus_tag=YPO2075
AL590842.1	EMBL	CDS	2356340	2357461	.	+	0	ID=cds2019;Parent=gene2056;Dbxref=GOA:Q0WF81,InterPro:IPR002121,InterPro:IPR002562,InterPro:IPR006292,InterPro:IPR010997,InterPro:IPR012337,UniProtKB/TrEMBL:Q0WF81,NCBI_GP:CAL20710.1;Name=CAL20710.1;Note=Similar to Escherichia coli ribonuclease D Rnd SW:RND_ECOLI (P09155) (375 aa) fasta scores: E(): 0%2C 67.6%25 id in 373 aa%2C and to Vibrio cholerae ribonuclease D VC1984 TR:Q9KQL4 (EMBL:AE004273) (381 aa) fasta scores: E(): 0%2C51.8%25 id in 367 aa;gbkey=CDS;gene=rnd;inference=similar to sequence:INSDC:AE004273;product=ribonuclease D;protein_id=CAL20710.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2356400	2356855	.	+	.	ID=id4841;Note=Pfam match to entry PF01612 3_5_exonuclease%2C 3'-5' exonuclease%2C score 154.80%2C E-value 1.4e-42;gbkey=misc_feature;gene=rnd;inference=protein motif:PF01612
AL590842.1	EMBL	sequence_feature	2356967	2357206	.	+	.	ID=id4842;Note=Pfam match to entry PF00570 HRDC%2C HRDC domain%2C score 91.00%2C E-value 2.5e-23;gbkey=misc_feature;gene=rnd;inference=protein motif:PF00570
AL590842.1	EMBL	gene	2357698	2357967	.	-	.	ID=gene2057;Name=minE;gbkey=Gene;gene=minE;gene_biotype=protein_coding;locus_tag=YPO2076
AL590842.1	EMBL	CDS	2357698	2357967	.	-	0	ID=cds2020;Parent=gene2057;Dbxref=GOA:Q8ZES7,InterPro:IPR005527,NCBI_GP:CAL20711.1;Name=CAL20711.1;Note=Similar to Escherichia coli cell division topological specificity factor MinE SW:MINE_ECOLI (P18198) (88 aa) fasta scores: E(): 1.9e-28%2C 82.6%25 id in 86 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) cell division topological specificity factor MinE SW:MINE_BUCAI (P57410) (83 aa) fasta scores: E(): 1.8e-22%2C 67.5%25 id in 83 aa;gbkey=CDS;gene=minE;product=cell division topological specificity factor;protein_id=CAL20711.1;transl_table=11
AL590842.1	EMBL	gene	2357971	2358783	.	-	.	ID=gene2058;Name=minD;gbkey=Gene;gene=minD;gene_biotype=protein_coding;locus_tag=YPO2077
AL590842.1	EMBL	CDS	2357971	2358783	.	-	0	ID=cds2021;Parent=gene2058;Dbxref=GOA:Q7CIC9,InterPro:IPR002586,InterPro:IPR010223,InterPro:IPR025501,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CIC9,NCBI_GP:CAL20712.1;Name=CAL20712.1;Note=Similar to Escherichia coli septum site-determining protein MinD SW:MIND_ECOLI (P18197) (269 aa) fasta scores: E(): 0%2C 91.8%25 id in 269 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) septum site-determining protein MinD TR:BAB13034 (EMBL:AP001119) (270 aa) fasta scores: E(): 0%2C 81.8%25 id in 269 aa;gbkey=CDS;gene=minD;inference=similar to sequence:INSDC:AP001119;product=septum site-determining protein;protein_id=CAL20712.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2358205	2358549	.	-	.	ID=id4843;Note=Pfam match to entry PF00991 ParA%2C ParA family ATPase%2C score 25.90%2C E-value 1.1e-05;gbkey=misc_feature;gene=minD;inference=protein motif:PF00991
AL590842.1	EMBL	sequence_feature	2358733	2358756	.	-	.	ID=id4844;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=minD;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	ribosome_entry_site	2358793	2358797	.	-	.	ID=id4845;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2358808	2359494	.	-	.	ID=gene2059;Name=minC;gbkey=Gene;gene=minC;gene_biotype=protein_coding;locus_tag=YPO2078
AL590842.1	EMBL	CDS	2358808	2359494	.	-	0	ID=cds2022;Parent=gene2059;Dbxref=GOA:Q8ZES5,InterPro:IPR005526,InterPro:IPR007874,InterPro:IPR013033,InterPro:IPR016098,NCBI_GP:CAL20713.1;Name=CAL20713.1;Note=Similar to Escherichia coli cell division inhibitor MinC%2C septum site-determining protein SW:MINC_ECOLI (P18196) (231 aa) fasta scores: E(): 0%2C 64.9%25 id in 231 aa%2Cand to Vibrio cholerae probable septum site-determining protein MinC TR:Q9KQN9 (EMBL:AE004271) (220 aa) fasta scores: E(): 0%2C 49.8%25 id in 227 aa;gbkey=CDS;gene=minC;inference=similar to sequence:INSDC:AE004271;product=cell division inhibitor;protein_id=CAL20713.1;transl_table=11
AL590842.1	EMBL	gene	2359920	2360183	.	-	.	ID=gene2060;Name=YPO2079;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2079
AL590842.1	EMBL	CDS	2359920	2360183	.	-	0	ID=cds2023;Parent=gene2060;Dbxref=UniProtKB/TrEMBL:Q74U32,NCBI_GP:CAL20714.1;Name=CAL20714.1;Note=No significant database hits. Doubtful CDS;gbkey=CDS;product=hypothetical protein;protein_id=CAL20714.1;transl_table=11
AL590842.1	EMBL	gene	2360215	2360487	.	+	.	ID=gene2061;Name=YPO2080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2080
AL590842.1	EMBL	CDS	2360215	2360487	.	+	0	ID=cds2024;Parent=gene2061;Dbxref=InterPro:IPR027354,NCBI_GP:CAL20715.1;Name=CAL20715.1;Note=Similar to Escherichia coli protein YcgL SW:YCGL_ECOLI (P76003) (108 aa) fasta scores: E(): 2.9e-24%2C71.8%25 id in 85 aa%2C and to Vibrio cholerae hypothetical protein VC1957 vc1957 TR:Q9KQP1 (EMBL:AE004271) (102 aa) fasta scores: E(): 6.1e-19%2C 60.0%25 id in 90 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004271;product=conserved hypothetical protein;protein_id=CAL20715.1;transl_table=11
AL590842.1	EMBL	gene	2360628	2361713	.	+	.	ID=gene2062;Name=YPO2081;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2081
AL590842.1	EMBL	CDS	2360628	2361713	.	+	0	ID=cds2025;Parent=gene2062;Dbxref=InterPro:IPR011757,InterPro:IPR011970,InterPro:IPR023346,UniProtKB/TrEMBL:Q74U30,NCBI_GP:CAL20716.1;Name=CAL20716.1;Note=Similar to Escherichia coli membrane-bound lytic murein transglycosylase B protein MltB SW:MLTB_ECOLI (P41052) (361 aa) fasta scores: E(): 1.8e-18%2C 28.5%25 id in 347 aa%2C and to Vibrio cholerae putative lytic murein transglycosylase VC1956 TR:Q9KQP2 (EMBL:AE004271) (323 aa) fasta scores: E(): 0%2C 48.3%25 id in 298 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004271;product=putative lipoprotein;protein_id=CAL20716.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2360649	2360681	.	+	.	ID=id4846;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	ribosome_entry_site	2361776	2361779	.	+	.	ID=id4847;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2361784	2362440	.	+	.	ID=gene2063;Name=YPO2082;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2082
AL590842.1	EMBL	CDS	2361784	2362440	.	+	0	ID=cds2026;Parent=gene2063;Dbxref=GOA:Q0WF74,InterPro:IPR002529,InterPro:IPR011234,UniProtKB/TrEMBL:Q0WF74,NCBI_GP:CAL20717.1;Name=CAL20717.1;Note=Similar to Escherichia coli hypothetical protein YcgM SW:YCGM_ECOLI (P76004) (219 aa) fasta scores: E(): 0%2C72.1%25 id in 219 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0318 TR:AAG03707 (EMBL:AE004470) (221 aa) fasta scores: E(): 0%2C 50.2%25 id in 219 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004470;product=putative fumarylacetoacetate hydrolase family protein;protein_id=CAL20717.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2361880	2362383	.	+	.	ID=id4848;Note=Pfam match to entry PF01557 FAA_hydrolase%2CFumarylacetoacetate (FAA) hydrolase family%2C score 247.30%2CE-value 2.1e-70;gbkey=misc_feature;inference=protein motif:PF01557
AL590842.1	EMBL	gene	2362543	2362989	.	+	.	ID=gene2064;Name=YPO2083;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2083
AL590842.1	EMBL	CDS	2362543	2362989	.	+	0	ID=cds2027;Parent=gene2064;Dbxref=InterPro:IPR005358,InterPro:IPR008228,NCBI_GP:CAL20718.1;Name=CAL20718.1;Note=Similar to Escherichia coli hypothetical protein YcgN SW:YCGN_ECOLI (P76005) (153 aa) fasta scores: E(): 0%2C85.1%25 id in 148 aa%2C and to Escherichia coli hypothetical protein YcgN TR:Q9R3F1 (EMBL:AE000216) (158 aa) fasta scores: E(): 0%2C 85.1%25 id in 148 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE000216;product=conserved hypothetical protein;protein_id=CAL20718.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2363016	2409384	.	+	.	ID=id4849;Note=putative defective lambdoid bacteriophage;gbkey=misc_feature
AL590842.1	EMBL	pseudogene	2366193	2366264	.	-	.	ID=gene2065;Name=int;gbkey=Gene;gene=int;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO2084;part=1/2;pseudo=true
AL590842.1	EMBL	pseudogene	2363019	2364233	.	-	.	ID=gene2065;Name=int;gbkey=Gene;gene=int;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO2084;part=2/2;pseudo=true
AL590842.1	EMBL	CDS	2366193	2366264	.	-	0	ID=cds2028;Parent=gene2065;Note=Similar to Escherichia coli O157:H7 integrase Int TR:Q9EY96 (EMBL:AP000400) (428 aa) fasta scores: E(): 3.9e-94%2C 54.118%25 id in 425 aa%2C and to Escherichia coli putative lambdoid prophage RAC integrase IntR SW:INTR_ECOLI (P76056) (411 aa) fasta scores: E(): 2e-66%2C 41.346%25 id in 416 aa. CDS is disrupted by the insertion of an IS100 element after codon 24;gbkey=CDS;gene=int;inference=similar to sequence:INSDC:AP000400;product=putative phage integrase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	CDS	2363019	2364233	.	-	0	ID=cds2028;Parent=gene2065;Note=Similar to Escherichia coli O157:H7 integrase Int TR:Q9EY96 (EMBL:AP000400) (428 aa) fasta scores: E(): 3.9e-94%2C 54.118%25 id in 425 aa%2C and to Escherichia coli putative lambdoid prophage RAC integrase IntR SW:INTR_ECOLI (P76056) (411 aa) fasta scores: E(): 2e-66%2C 41.346%25 id in 416 aa. CDS is disrupted by the insertion of an IS100 element after codon 24;gbkey=CDS;gene=int;inference=similar to sequence:INSDC:AP000400;product=putative phage integrase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	2363085	2363711	.	-	.	ID=id4850;Note=Pfam match to entry PF00589 Phage_integrase%2C Phage integrase family%2C score 52.80%2C E-value 7.8e-12;gbkey=misc_feature;gene=int;inference=protein motif:PF00589
AL590842.1	EMBL	ribosome_entry_site	2364180	2364186	.	-	.	ID=id4851;gbkey=regulatory;gene=int;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	repeat_region	2364238	2366191	.	+	.	ID=id4852;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	2364238	2364265	.	+	.	ID=id4853;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	2364324	2365346	.	+	.	ID=gene2066;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO2085
AL590842.1	EMBL	CDS	2364324	2365346	.	+	0	ID=cds2029;Parent=gene2066;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL20720.1;Name=CAL20720.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL20720.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2364348	2364431	.	+	.	ID=id4854;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	sequence_feature	2364375	2364440	.	+	.	ID=id4855;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	2364669	2365202	.	+	.	ID=id4856;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	gene	2365343	2366125	.	+	.	ID=gene2067;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO2086
AL590842.1	EMBL	CDS	2365343	2366125	.	+	0	ID=cds2030;Parent=gene2067;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL20721.1;Name=CAL20721.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL20721.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2365511	2366050	.	+	.	ID=id4857;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	2365670	2365693	.	+	.	ID=id4858;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	INVERTED	2366164	2366191	.	-	.	ID=id4859;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	2366293	2366553	.	-	.	ID=gene2068;Name=YPO2087;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2087
AL590842.1	EMBL	CDS	2366293	2366553	.	-	0	ID=cds2031;Parent=gene2068;Dbxref=InterPro:IPR009634,UniProtKB/TrEMBL:Q74U26,NCBI_GP:CAL20722.1;Name=CAL20722.1;Note=Similar to Escherichia coli O157:H7 VT2-Sakai prophage excisionase Xis TR:Q9KXH5 (EMBL:AP000422) (99 aa) fasta scores: E(): 1.7e-10%2C 43.5%25 id in 69 aa. CDS lacks amino acids in the N-terminal region in comparison to the E. coli protein;gbkey=CDS;inference=similar to sequence:INSDC:AP000422;product=putative phage excisionase;protein_id=CAL20722.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2366558	2366562	.	-	.	ID=id4860;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2366631	2366834	.	-	.	ID=gene2069;Name=YPO2087a;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2087a
AL590842.1	EMBL	CDS	2366631	2366834	.	-	0	ID=cds2032;Parent=gene2069;Dbxref=UniProtKB/TrEMBL:Q74U25,NCBI_GP:CAL20723.1;Name=CAL20723.1;Note=Weak similarity to the N-terminal region of bacteriophage VT2-Sa hypothetical protein TR:Q9T1L4 (EMBL:AP000363) (139 aa) fasta scores: E(): 7.8%2C 33.333%25 id in 48 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP000363;product=putative phage protein;protein_id=CAL20723.1;transl_table=11
AL590842.1	EMBL	gene	2366853	2367497	.	-	.	ID=gene2070;Name=YPO2088;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2088
AL590842.1	EMBL	CDS	2366853	2367497	.	-	0	ID=cds2033;Parent=gene2070;Dbxref=GOA:Q7CID3,InterPro:IPR012327,InterPro:IPR029063,UniProtKB/TrEMBL:Q7CID3,NCBI_GP:CAL20724.1;Name=CAL20724.1;Note=Similar to the C-terminal regions of Curtobacterium albidum methyltransferase TR:P71101 (EMBL:D82028) (280 aa) fasta scores: E(): 1.2e-20%2C 37.7%25 id in 204 aa%2C and Xylella fastidiosa methyltransferase XF0935 TR:Q9PEU3 (EMBL:AE003932) (311 aa) fasta scores: E(): 1.4e-16%2C 36.3%25 id in 212 aa;gbkey=CDS;inference=similar to sequence:INSDC:D82028;product=putative methyltransferase;protein_id=CAL20724.1;transl_table=11
AL590842.1	EMBL	gene	2367596	2368024	.	+	.	ID=gene2071;Name=ninB;gbkey=Gene;gene=ninB;gene_biotype=protein_coding;locus_tag=YPO2089
AL590842.1	EMBL	CDS	2367596	2368024	.	+	0	ID=cds2034;Parent=gene2071;Dbxref=InterPro:IPR008711,UniProtKB/TrEMBL:Q0WF67,NCBI_GP:CAL20725.1;Name=CAL20725.1;Note=Similar to bacteriophage lambda protein NinB SW:NINB_LAMBD (P03765) (146 aa) fasta scores: E(): 8.8e-30%2C57.6%25 id in 132 aa%2C and to bacteriophage P22 protein NinB SW:NINB_BPP22 (Q38662) (145 aa) fasta scores: E(): 3.8e-28%2C57.3%25 id in 131 aa;gbkey=CDS;gene=ninB;product=putative phage protein;protein_id=CAL20725.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2368085	2368088	.	+	.	ID=id4861;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2368098	2368703	.	+	.	ID=gene2072;Name=YPO2090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2090
AL590842.1	EMBL	CDS	2368098	2368703	.	+	0	ID=cds2035;Parent=gene2072;Dbxref=InterPro:IPR008713,UniProtKB/TrEMBL:Q7CID4,NCBI_GP:CAL20726.1;Name=CAL20726.1;Note=Similar to bacteriophage lambda protein NinG SW:NING_LAMBD (P03770) (204 aa) fasta scores: E(): 4.4e-27%2C42.6%25 id in 204 aa%2C and to bacteriophage P22 protein NinG SW:NING_BPP22 (Q38667) (203 aa) fasta scores: E(): 1.8e-25%2C41.6%25 id in 197 aa;gbkey=CDS;product=putative phage protein;protein_id=CAL20726.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2368692	2368695	.	+	.	ID=id4862;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2368704	2369093	.	+	.	ID=gene2073;Name=YPO2091;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2091
AL590842.1	EMBL	CDS	2368704	2369093	.	+	0	ID=cds2036;Parent=gene2073;Dbxref=GOA:Q7CID5,InterPro:IPR010534,UniProtKB/TrEMBL:Q7CID5,NCBI_GP:CAL20727.1;Name=CAL20727.1;Note=Similar to bacteriophage H19B antitermination protein Q SW:REGQ_BPH19 (O48429) (144 aa) fasta scores: E(): 0%2C 64.6%25 id in 127 aa%2C and to bacteriophage VT2-Sa antitermination protein Q SW:REGQ_BP933 (Q9ZWW9) (144 aa) fasta scores: E(): 0%2C 62.2%25 id in 127 aa;gbkey=CDS;product=putative phage antitermination protein;protein_id=CAL20727.1;transl_table=11
AL590842.1	EMBL	gene	2369097	2369315	.	+	.	ID=gene2074;Name=YPO2092;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2092
AL590842.1	EMBL	CDS	2369097	2369315	.	+	0	ID=cds2037;Parent=gene2074;Dbxref=InterPro:IPR018880,UniProtKB/TrEMBL:Q74U20,NCBI_GP:CAL20728.1;Name=CAL20728.1;Note=Poor databases matches%2C similar to N-terminus of Shigella flexneri insertion sequence protein IS2 DNA TR:Q54157 (EMBL:Z23101) (179 aa) fasta scores: E(): 2e-05%2C49.1%25 id in 57 aa. Possible gene remnant;gbkey=CDS;inference=similar to sequence:INSDC:Z23101;product=hypothetical phage protein;protein_id=CAL20728.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2369349	2369353	.	+	.	ID=id4863;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2369364	2369927	.	+	.	ID=gene2075;Name=YPO2093;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2093
AL590842.1	EMBL	CDS	2369364	2369927	.	+	0	ID=cds2038;Parent=gene2075;Dbxref=InterPro:IPR003497,UniProtKB/TrEMBL:Q7CID6,NCBI_GP:CAL20729.1;Name=CAL20729.1;Note=Similar to N-terminal regions of bacteriophage APSE-1 protein p43 TR:Q9T1Q5 (EMBL:AF157835) (256 aa) fasta scores: E(): 3.3e-19%2C 46.5%25 id in 129 aa%2C and to Xylella fastidiosa phage-related protein XF1645 TR:Q9PCW0 (EMBL:AE003991) (315 aa) fasta scores: E(): 1.5e-18%2C 48.6%25 id in 107 aa. Possible gene remnant;gbkey=CDS;inference=similar to sequence:INSDC:AF157835;product=putative phage protein;protein_id=CAL20729.1;transl_table=11
AL590842.1	EMBL	gene	2370012	2370194	.	-	.	ID=gene2076;Name=YPO2094;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2094
AL590842.1	EMBL	CDS	2370012	2370194	.	-	0	ID=cds2039;Parent=gene2076;Dbxref=UniProtKB/TrEMBL:Q74U18,NCBI_GP:CAL20730.1;Name=CAL20730.1;Note=No significant database matches;gbkey=CDS;product=hypothetical phage protein;protein_id=CAL20730.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2370342	2370346	.	+	.	ID=id4864;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2370351	2370560	.	+	.	ID=gene2077;Name=YPO2095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2095
AL590842.1	EMBL	CDS	2370351	2370560	.	+	0	ID=cds2040;Parent=gene2077;Dbxref=UniProtKB/TrEMBL:Q7CID7,NCBI_GP:CAL20731.1;Name=CAL20731.1;Note=No significant database matches;gbkey=CDS;product=hypothetical phage protein;protein_id=CAL20731.1;transl_table=11
AL590842.1	EMBL	gene	2370557	2370832	.	-	.	ID=gene2078;Name=YPO2096;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2096
AL590842.1	EMBL	CDS	2370557	2370832	.	-	0	ID=cds2041;Parent=gene2078;Dbxref=UniProtKB/TrEMBL:Q0WF60,NCBI_GP:CAL20732.1;Name=CAL20732.1;Note=No significant database matches;gbkey=CDS;product=hypothetical phage protein;protein_id=CAL20732.1;transl_table=11
AL590842.1	EMBL	gene	2370955	2371275	.	+	.	ID=gene2079;Name=YPO2097;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2097
AL590842.1	EMBL	CDS	2370955	2371275	.	+	0	ID=cds2042;Parent=gene2079;Dbxref=UniProtKB/TrEMBL:Q0WF59,NCBI_GP:CAL20733.1;Name=CAL20733.1;Note=C-terminus similar to bacteriophage PS34 protein gp13 TR:O80287 (EMBL:AJ011580) (67 aa) fasta scores: E(): 4.2e-10%2C 53.1%25 id in 64 aa. Possible alternative translational start site;gbkey=CDS;inference=similar to sequence:INSDC:AJ011580;product=putative phage protein;protein_id=CAL20733.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2371162	2371221	.	+	.	ID=id4865;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2371306	2371818	.	+	.	ID=gene2080;Name=YPO2098;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2098
AL590842.1	EMBL	CDS	2371306	2371818	.	+	0	ID=cds2043;Parent=gene2080;Dbxref=GOA:Q0WF58,InterPro:IPR002196,InterPro:IPR023346,InterPro:IPR023347,UniProtKB/TrEMBL:Q0WF58,NCBI_GP:CAL20734.1;Name=CAL20734.1;Note=Similar to bacteriophage P1 lysozyme LysA SW:LYCV_BPP1 (Q37875) (185 aa) fasta scores: E(): 4.3e-29%2C52.3%25 id in 176 aa%2C and to Serratia marcescens putative phage lysozyme NucD TR:Q54419 (EMBL:U11698) (179 aa) fasta scores: E(): 1.8e-19%2C 39.8%25 id in 171 aa;gbkey=CDS;inference=similar to sequence:INSDC:U11698;product=putative phage lysozyme;protein_id=CAL20734.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2371324	2371392	.	+	.	ID=id4866;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2371468	2371791	.	+	.	ID=id4867;Note=Pfam match to entry PF00959 Phage_lysozyme%2CLysozyme%2C score 136.90%2C E-value 3.7e-37;gbkey=misc_feature;inference=protein motif:PF00959
AL590842.1	EMBL	ribosome_entry_site	2371789	2371794	.	+	.	ID=id4868;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2371803	2372261	.	+	.	ID=gene2081;Name=rzpR;gbkey=Gene;gene=rzpR;gene_biotype=protein_coding;locus_tag=YPO2099
AL590842.1	EMBL	CDS	2371803	2372261	.	+	0	ID=cds2044;Parent=gene2081;Dbxref=GOA:Q7CID8,InterPro:IPR004929,UniProtKB/TrEMBL:Q7CID8,NCBI_GP:CAL20735.1;Name=CAL20735.1;Note=Similar to Escherichia coli putative endopeptidase from lambdoid prophage RAC RzpR SW:RZPR_ECOLI (P77551) (147 aa) fasta scores: E(): 1.7e-14%2C 41.7%25 id in 151 aa%2C and to Salmonella typhimurium gp15 protein TR:Q56118 (EMBL:X67137) (156 aa) fasta scores: E(): 2.4e-14%2C 40.1%25 id in 152 aa;gbkey=CDS;gene=rzpR;inference=similar to sequence:INSDC:X67137;product=putative prophage endopeptidase;protein_id=CAL20735.1;transl_table=11
AL590842.1	EMBL	gene	2372723	2373520	.	+	.	ID=gene2082;Name=YPO2100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2100
AL590842.1	EMBL	CDS	2372723	2373520	.	+	0	ID=cds2045;Parent=gene2082;Dbxref=GOA:Q7CID9,InterPro:IPR005039,UniProtKB/TrEMBL:Q7CID9,NCBI_GP:CAL20736.1;Name=CAL20736.1;Note=Similar to bacteriophage P1 antirepressor 2 protein Ant2 TR:CAA33660 (EMBL:X15639) (239 aa) fasta scores: E(): 3.9e-18%2C 36.4%25 id in 209 aa%2C and to bacteriophage HK022 DNA-binding protein Roi TR:Q37926 (EMBL:U47336) (241 aa) fasta scores: E(): 1.8e-10%2C 29.6%25 id in 243 aa;gbkey=CDS;inference=similar to sequence:INSDC:X15639;product=phage regulatory protein;protein_id=CAL20736.1;transl_table=11
AL590842.1	EMBL	gene	2373977	2374612	.	+	.	ID=gene2083;Name=YPO2101;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2101
AL590842.1	EMBL	CDS	2373977	2374612	.	+	0	ID=cds2046;Parent=gene2083;Dbxref=UniProtKB/TrEMBL:Q7CIE0,NCBI_GP:CAL20737.1;Name=CAL20737.1;Note=No significant database matches;gbkey=CDS;product=hypothetical phage protein;protein_id=CAL20737.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2374364	2374393	.	+	.	ID=id4869;Note=PS00142 Neutral zinc metallopeptidases%2C zinc-binding region signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00142
AL590842.1	EMBL	gene	2374643	2375092	.	+	.	ID=gene2084;Name=YPO2102;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2102
AL590842.1	EMBL	CDS	2374643	2375092	.	+	0	ID=cds2047;Parent=gene2084;Dbxref=InterPro:IPR018738,UniProtKB/TrEMBL:Q7CIE1,NCBI_GP:CAL20738.1;Name=CAL20738.1;Note=No significant database matches;gbkey=CDS;product=hypothetical phage protein;protein_id=CAL20738.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2375091	2375096	.	+	.	ID=id4870;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	pseudogene	2375102	2375656	.	+	.	ID=gene2085;Name=YPO2103;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO2103;part=1/2;pseudo=true
AL590842.1	EMBL	pseudogene	2376971	2377915	.	+	.	ID=gene2085;Name=YPO2103;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO2103;part=2/2;pseudo=true
AL590842.1	EMBL	CDS	2375102	2375656	.	+	0	ID=cds2048;Parent=gene2085;Dbxref=PSEUDO:CAL20739.1;Note=N-terminal region is similar to the N-terminus of Escherichia coli O157:H7 large subunit terminase H0128 TR:Q9KXC8 (EMBL:AP000422) (449 aa) fasta scores: E(): 1.3e-29%2C 44.6%25 id in 195 aa. CDS has been disrupted by a IS285 element inserted after codon 185;gbkey=CDS;inference=similar to sequence:INSDC:AP000422;product=putative phage terminase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	CDS	2376971	2377915	.	+	0	ID=cds2048;Parent=gene2085;Dbxref=PSEUDO:CAL20739.1;Note=N-terminal region is similar to the N-terminus of Escherichia coli O157:H7 large subunit terminase H0128 TR:Q9KXC8 (EMBL:AP000422) (449 aa) fasta scores: E(): 1.3e-29%2C 44.6%25 id in 195 aa. CDS has been disrupted by a IS285 element inserted after codon 185;gbkey=CDS;inference=similar to sequence:INSDC:AP000422;product=putative phage terminase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	repeat_region	2375657	2376971	.	+	.	ID=id4871;Note=insertion sequence:IS285;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	2375657	2375685	.	+	.	ID=id4872;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	2375728	2376936	.	+	.	ID=gene2086;Name=y1062;gbkey=Gene;gene=y1062;gene_biotype=protein_coding;gene_synonym=ypmt1.80C;locus_tag=YPO2104
AL590842.1	EMBL	CDS	2375728	2376936	.	+	0	ID=cds2049;Parent=gene2086;Dbxref=GOA:O68779,InterPro:IPR001207,UniProtKB/TrEMBL:O68779,NCBI_GP:CAL20740.1;Name=CAL20740.1;Note=Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa.;gbkey=CDS;gene=y1062;inference=similar to sequence:INSDC:AF053947;product=transposase for the IS285 insertion element;protein_id=CAL20740.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2375728	2376864	.	+	.	ID=id4873;Note=Pfam match to entry PF00872 Transpo_mutator%2CTransposase%2C Mutator family%2C score 430.40%2C E-value 1.6e-125;gbkey=misc_feature;gene=y1062;inference=protein motif:PF00872
AL590842.1	EMBL	sequence_feature	2376421	2376495	.	+	.	ID=id4874;Note=PS01007 Transposases%2C Mutator family%2C signature.;gbkey=misc_feature;gene=y1062;inference=protein motif:ProSite:PS01007
AL590842.1	EMBL	INVERTED	2376943	2376971	.	-	.	ID=id4875;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	pseudogene	2377915	2378640	.	+	.	ID=gene2087;Name=YPO2106;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO2106;part=1/2;pseudo=true
AL590842.1	EMBL	pseudogene	2378644	2379300	.	+	.	ID=gene2087;Name=YPO2106;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO2106;part=2/2;pseudo=true
AL590842.1	EMBL	CDS	2377915	2378640	.	+	0	ID=cds2050;Parent=gene2087;Note=Similar to the N-terminal region of bacteriophage MB78 60 kDa protein gp62 TR:Q9T0Q3 (EMBL:Y19202) (540 aa) fasta scores: E(): 1.5e-19%2C 30.689%25 id in 479 aa. CDS contains a nonsence mutation (ochre) after codon 242;gbkey=CDS;inference=similar to sequence:INSDC:Y19202;product=putative phage protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	CDS	2378644	2379300	.	+	0	ID=cds2050;Parent=gene2087;Note=Similar to the N-terminal region of bacteriophage MB78 60 kDa protein gp62 TR:Q9T0Q3 (EMBL:Y19202) (540 aa) fasta scores: E(): 1.5e-19%2C 30.689%25 id in 479 aa. CDS contains a nonsence mutation (ochre) after codon 242;gbkey=CDS;inference=similar to sequence:INSDC:Y19202;product=putative phage protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	2379304	2380416	.	+	.	ID=gene2088;Name=YPO2108;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2108
AL590842.1	EMBL	CDS	2379304	2380416	.	+	0	ID=cds2051;Parent=gene2088;Dbxref=InterPro:IPR017029,UniProtKB/TrEMBL:Q7CIE3,NCBI_GP:CAL20742.1;Name=CAL20742.1;Note=No significant database matches;gbkey=CDS;product=hypothetical phage protein;protein_id=CAL20742.1;transl_table=11
AL590842.1	EMBL	gene	2380538	2381311	.	+	.	ID=gene2089;Name=YPO2109;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2109
AL590842.1	EMBL	CDS	2380538	2381311	.	+	0	ID=cds2052;Parent=gene2089;Dbxref=UniProtKB/TrEMBL:Q7CIE4,NCBI_GP:CAL20743.1;Name=CAL20743.1;Note=No significant database matches;gbkey=CDS;product=hypothetical phage protein;protein_id=CAL20743.1;transl_table=11
AL590842.1	EMBL	gene	2381325	2382530	.	+	.	ID=gene2090;Name=YPO2110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2110
AL590842.1	EMBL	CDS	2381325	2382530	.	+	0	ID=cds2053;Parent=gene2090;Dbxref=InterPro:IPR003343,InterPro:IPR008964,UniProtKB/TrEMBL:Q7CIE5,NCBI_GP:CAL20744.1;Name=CAL20744.1;Note=C-terminal region is similar to Yersinia pestis pMT-1 plasmid hypothetical protein YPMT1.20c TR:O68736 (EMBL:AF074611) (220 aa) fasta scores: E(): 8.9e-07%2C 29.5%25 id in 220 aa. C-terminal region of the CDS is similar to the C-terminus of Yersinia enterocolitica lytic bacteriophage phiYeO3-12 minor capsid protein 10B TR:Q9T108 (EMBL:AJ251805) (433 aa) fasta scores: E(): 1.4e-05%2C 50.6%25 id in 81 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ251805;product=putative phage protein;protein_id=CAL20744.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2382276	2382512	.	+	.	ID=id4876;Note=Pfam match to entry PF02368 Big_2%2C %2C score 81.30%2CE-value 1.9e-20;gbkey=misc_feature;inference=protein motif:PF02368
AL590842.1	EMBL	gene	2382530	2383060	.	+	.	ID=gene2091;Name=YPO2111;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2111
AL590842.1	EMBL	CDS	2382530	2383060	.	+	0	ID=cds2054;Parent=gene2091;Dbxref=UniProtKB/TrEMBL:Q0WF49,NCBI_GP:CAL20745.1;Name=CAL20745.1;Note=No significant database matches;gbkey=CDS;product=hypothetical phage protein;protein_id=CAL20745.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2383048	2383051	.	+	.	ID=id4877;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2383057	2383311	.	+	.	ID=gene2092;Name=YPO2112;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2112
AL590842.1	EMBL	CDS	2383057	2383311	.	+	0	ID=cds2055;Parent=gene2092;Dbxref=UniProtKB/TrEMBL:Q7CIE6,NCBI_GP:CAL20746.1;Name=CAL20746.1;Note=Similar to Yersinia pestis pMT1 plasmid hypothetical protein YPMT1.26Ac TR:Q9ZH06 (EMBL:AF074611) (84 aa) fasta scores: E(): 1e-15%2C 54.3%25 id in 81 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF074611;product=conserved hypothetical phage protein;protein_id=CAL20746.1;transl_table=11
AL590842.1	EMBL	gene	2383313	2383663	.	+	.	ID=gene2093;Name=YPO2113;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2113
AL590842.1	EMBL	CDS	2383313	2383663	.	+	0	ID=cds2056;Parent=gene2093;Dbxref=UniProtKB/TrEMBL:Q7CIE7,NCBI_GP:CAL20747.1;Name=CAL20747.1;Note=No significant database matches;gbkey=CDS;product=hypothetical phage protein;protein_id=CAL20747.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2383654	2383657	.	+	.	ID=id4878;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2383665	2384249	.	+	.	ID=gene2094;Name=YPO2114;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2114
AL590842.1	EMBL	CDS	2383665	2384249	.	+	0	ID=cds2057;Parent=gene2094;Dbxref=UniProtKB/TrEMBL:Q7CIE8,NCBI_GP:CAL20748.1;Name=CAL20748.1;Note=No significant database matches;gbkey=CDS;product=hypothetical phage protein;protein_id=CAL20748.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2384235	2384241	.	+	.	ID=id4879;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2384246	2384653	.	+	.	ID=gene2095;Name=YPO2115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2115
AL590842.1	EMBL	CDS	2384246	2384653	.	+	0	ID=cds2058;Parent=gene2095;Dbxref=InterPro:IPR025395,UniProtKB/TrEMBL:Q7CIE9,NCBI_GP:CAL20749.1;Name=CAL20749.1;Note=No significant database matches;gbkey=CDS;product=hypothetical phage protein;protein_id=CAL20749.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2384708	2384711	.	+	.	ID=id4880;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2384719	2385639	.	+	.	ID=gene2096;Name=YPO2116;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2116
AL590842.1	EMBL	CDS	2384719	2385639	.	+	0	ID=cds2059;Parent=gene2096;Dbxref=InterPro:IPR003343,InterPro:IPR008964,InterPro:IPR014918,UniProtKB/TrEMBL:Q7CIF0,NCBI_GP:CAL20750.1;Name=CAL20750.1;Note=C-terminal region of the CDS is similar to the C-terminus of bacteriophage N15 protein gp13 TR:O64327 (EMBL:AF064539) (245 aa) fasta scores: E(): 1.6e-07%2C 50.0%25 id in 92 aa%2C and to Yersinia pestis hypothetical protein YPMT1.14C TR:O68731 (EMBL:AF053947) (248 aa) fasta scores: E(): 4.7e-06%2C 30.2%25 id in 192 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF064539;product=putative phage protein;protein_id=CAL20750.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2385385	2385624	.	+	.	ID=id4881;Note=Pfam match to entry PF02368 Big_2%2C %2C score 72.20%2CE-value 1.1e-17;gbkey=misc_feature;inference=protein motif:PF02368
AL590842.1	EMBL	gene	2385652	2385963	.	+	.	ID=gene2097;Name=YPO2117;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2117
AL590842.1	EMBL	CDS	2385652	2385963	.	+	0	ID=cds2060;Parent=gene2097;Dbxref=InterPro:IPR014859,UniProtKB/TrEMBL:Q7CIF1,NCBI_GP:CAL20751.1;Name=CAL20751.1;Note=No significant database matches;gbkey=CDS;product=hypothetical phage protein;protein_id=CAL20751.1;transl_table=11
AL590842.1	EMBL	gene	2386050	2386271	.	+	.	ID=gene2098;Name=YPO2118;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2118
AL590842.1	EMBL	CDS	2386050	2386271	.	+	0	ID=cds2061;Parent=gene2098;Dbxref=InterPro:IPR014915,UniProtKB/TrEMBL:Q0WF42,NCBI_GP:CAL20752.1;Name=CAL20752.1;Note=No significant database matches;gbkey=CDS;product=hypothetical phage protein;protein_id=CAL20752.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2386261	2386264	.	+	.	ID=id4882;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2386272	2389775	.	+	.	ID=gene2099;Name=YPO2119;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2119
AL590842.1	EMBL	CDS	2386272	2389775	.	+	0	ID=cds2062;Parent=gene2099;Dbxref=InterPro:IPR006431,InterPro:IPR009628,UniProtKB/TrEMBL:Q7CIF2,NCBI_GP:CAL20753.1;Name=CAL20753.1;Note=C-terminal region is similar to bacteriophage lambda minor tail protein precursor H SW:VMTH_LAMBD (P03736) (853 aa) fasta scores: E(): 0%2C 28.1%25 id in 915 aa%2C and to bacteriophage N15 protein gp16 TR:O64330 (EMBL:AF064539) (838 aa) fasta scores: E(): 1.5e-23%2C 29.4%25 id in 889 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF064539;product=putative phage tail protein;protein_id=CAL20753.1;transl_table=11
AL590842.1	EMBL	gene	2389778	2390119	.	+	.	ID=gene2100;Name=YPO2120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2120
AL590842.1	EMBL	CDS	2389778	2390119	.	+	0	ID=cds2063;Parent=gene2100;Dbxref=InterPro:IPR010265,UniProtKB/TrEMBL:Q7CIF3,NCBI_GP:CAL20754.1;Name=CAL20754.1;Note=Similar to bacteriophage HK022 protein gp17 TR:Q9MCU5 (EMBL:AF069308) (112 aa) fasta scores: E(): 3.4e-17%2C 45.6%25 id in 114 aa%2C and to bacteriophage N15 protein gp17 TR:O64331 (EMBL:AF064539) (115 aa) fasta scores: E(): 6.9e-17%2C 46.6%25 id in 116 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF069308;product=putative phage protein;protein_id=CAL20754.1;transl_table=11
AL590842.1	EMBL	repeat_region	2390279	2390990	.	+	.	ID=id4883;Note=Contains a 'A' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	2390424	2390882	.	+	.	ID=gene2101;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO2121
AL590842.1	EMBL	CDS	2390424	2390882	.	+	0	ID=cds2064;Parent=gene2101;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL20755.1;Name=CAL20755.1;Note=Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL20755.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2390478	2390789	.	+	.	ID=id4884;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	2391003	2391755	.	+	.	ID=gene2102;Name=YPO2122;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2122
AL590842.1	EMBL	CDS	2391003	2391755	.	+	0	ID=cds2065;Parent=gene2102;Dbxref=InterPro:IPR006487,UniProtKB/TrEMBL:Q7CIF4,NCBI_GP:CAL20756.1;Name=CAL20756.1;Note=Similar to bacteriophage N15 protein gp18 TR:O64332 (EMBL:AF064539) (251 aa) fasta scores: E(): 0%2C 66.4%25 id in 250 aa%2C and to bacteriophage HK022 protein gp18 TR:Q9MCU4 (EMBL:AF069308) (251 aa) fasta scores: E(): 0%2C 67.6%25 id in 250 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF069308;product=putative phage protein;protein_id=CAL20756.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2391749	2391753	.	+	.	ID=id4885;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2391758	2392468	.	+	.	ID=gene2103;Name=YPO2123;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2123
AL590842.1	EMBL	CDS	2391758	2392468	.	+	0	ID=cds2066;Parent=gene2103;Dbxref=InterPro:IPR000064,InterPro:IPR000555,InterPro:IPR028090,UniProtKB/TrEMBL:Q7CIF5,NCBI_GP:CAL20757.1;Name=CAL20757.1;Note=Similar to bacteriophage N15 protein gp19 TR:O64333 (EMBL:AF064539) (243 aa) fasta scores: E(): 0%2C 76.4%25 id in 233 aa%2C and to bacteriophage HK022 protein gp19 TR:Q9MCU3 (EMBL:AF069308) (236 aa) fasta scores: E(): 0%2C 76.0%25 id in 233 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF069308;product=putative phage minor tail protein;protein_id=CAL20757.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2392719	2392724	.	+	.	ID=id4886;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2392729	2393361	.	+	.	ID=gene2104;Name=YPO2124;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2124
AL590842.1	EMBL	CDS	2392729	2393361	.	+	0	ID=cds2067;Parent=gene2104;Dbxref=UniProtKB/TrEMBL:Q7CIF6,NCBI_GP:CAL20758.1;Name=CAL20758.1;Note=No significant database matches;gbkey=CDS;product=hypothetical phage protein;protein_id=CAL20758.1;transl_table=11
AL590842.1	EMBL	gene	2393440	2393979	.	-	.	ID=gene2105;Name=YPO2125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2125
AL590842.1	EMBL	CDS	2393440	2393979	.	-	0	ID=cds2068;Parent=gene2105;Dbxref=GOA:Q0WF35,InterPro:IPR005569,InterPro:IPR010985,InterPro:IPR013321,UniProtKB/TrEMBL:Q0WF35,NCBI_GP:CAL20759.1;Name=CAL20759.1;Note=Internal region similar to bacteriophage P22 regulatory protein Mnt SW:RMNT_BPP22 (P03049) (82 aa) fasta scores: E(): 0.00074%2C 31.3%25 id in 83 aa%2C and bacteriophage P22 transcriptional repressor Arc SW:RARC_BPP22 (P03050) (53 aa) fasta scores: E(): 0.73%2C 41.3%25 id in 46 aa;gbkey=CDS;product=putative phage regulatory protein;protein_id=CAL20759.1;transl_table=11
AL590842.1	EMBL	gene	2394149	2395243	.	+	.	ID=gene2106;Name=YPO2126;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2126
AL590842.1	EMBL	CDS	2394149	2395243	.	+	0	ID=cds2069;Parent=gene2106;Dbxref=InterPro:IPR003497,UniProtKB/TrEMBL:Q7CIF7,NCBI_GP:CAL20760.1;Name=CAL20760.1;Note=Internal region similar to bacteriophage N15 protein gp30 TR:O64341 (EMBL:AF064539) (264 aa) fasta scores: E(): 2.1e-21%2C 40.0%25 id in 200 aa%2C and Staphylococcus aureus prophage phiPV83 antirepressor protein TR:Q9MBT0 (EMBL:AB044554) (265 aa) fasta scores: E(): 5.4e-08%2C 35.4%25 id in 158 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF064539;product=putative phage protein;protein_id=CAL20760.1;transl_table=11
AL590842.1	EMBL	gene	2395342	2395893	.	+	.	ID=gene2107;Name=YPO2127;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2127
AL590842.1	EMBL	CDS	2395342	2395893	.	+	0	ID=cds2070;Parent=gene2107;Dbxref=UniProtKB/TrEMBL:Q7CIF8,NCBI_GP:CAL20761.1;Name=CAL20761.1;Note=No significant database matches;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative phage-related membrane protein;protein_id=CAL20761.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2395354	2395407	.	+	.	ID=id4887;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2395435	2395494	.	+	.	ID=id4888;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2395901	2396251	.	+	.	ID=gene2108;Name=YPO2128;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2128
AL590842.1	EMBL	CDS	2395901	2396251	.	+	0	ID=cds2071;Parent=gene2108;Dbxref=UniProtKB/TrEMBL:Q0WF32,NCBI_GP:CAL20762.1;Name=CAL20762.1;Note=No significant database matches;gbkey=CDS;product=putative phage-related lipoprotein;protein_id=CAL20762.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2395916	2395948	.	+	.	ID=id4889;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	ribosome_entry_site	2396298	2396301	.	+	.	ID=id4890;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2396307	2396927	.	+	.	ID=gene2109;Name=YPO2129;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2129
AL590842.1	EMBL	CDS	2396307	2396927	.	+	0	ID=cds2072;Parent=gene2109;Dbxref=InterPro:IPR010654,UniProtKB/TrEMBL:Q7CIF9,NCBI_GP:CAL20763.1;Name=CAL20763.1;Note=Similar to bacteriophage lambda tail assembly protein I I SW:VTAI_LAMBD (P03730) (223 aa) fasta scores: E(): 2.4e-13%2C 35.7%25 id in 210 aa%2C and to Yersinia pestis pMT1 plasmid hypothetical protein YPMT1.07C TR:O68725 (EMBL:AF074611) (195 aa) fasta scores: E(): 9e-07%2C 32.1%25 id in 209 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF074611;product=putative phage tail assembly protein;protein_id=CAL20763.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2396607	2396675	.	+	.	ID=id4891;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2396685	2396753	.	+	.	ID=id4892;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2396814	2396885	.	+	.	ID=id4893;Note=PS00583 pfkB family of carbohydrate kinases signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS00583
AL590842.1	EMBL	gene	2397102	2397413	.	-	.	ID=gene2110;Name=YPO2130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2130
AL590842.1	EMBL	CDS	2397102	2397413	.	-	0	ID=cds2073;Parent=gene2110;Dbxref=UniProtKB/TrEMBL:Q0WF30,NCBI_GP:CAL20764.1;Name=CAL20764.1;Note=No significant database matches;gbkey=CDS;product=hypothetical phage protein;protein_id=CAL20764.1;transl_table=11
AL590842.1	EMBL	gene	2397499	2400702	.	+	.	ID=gene2111;Name=YPO2131;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2131
AL590842.1	EMBL	CDS	2397499	2400702	.	+	0	ID=cds2074;Parent=gene2111;Dbxref=InterPro:IPR003961,InterPro:IPR013783,InterPro:IPR015406,UniProtKB/TrEMBL:Q7CIG0,NCBI_GP:CAL20765.1;Name=CAL20765.1;Note=Similar to bacteriophage lambda host specificity protein J SW:VHSJ_LAMBD (P03749) (1132 aa) fasta scores: E(): 0%2C 29.5%25 id in 1056 aa%2C and to bacteriophage N15 protein gp21 TR:O64335 (EMBL:AF064539) (1061 aa) fasta scores: E(): 0%2C 58.7%25 id in 1041 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF064539;product=putative phage host specificity protein;protein_id=CAL20765.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2399353	2399598	.	+	.	ID=id4894;Note=Pfam match to entry PF00041 fn3%2C Fibronectin type III domain%2C score 6.90%2C E-value 0.52;gbkey=misc_feature;inference=protein motif:PF00041
AL590842.1	EMBL	sequence_feature	2399650	2399907	.	+	.	ID=id4895;Note=Pfam match to entry PF00041 fn3%2C Fibronectin type III domain%2C score 1.50%2C E-value 1.6;gbkey=misc_feature;inference=protein motif:PF00041
AL590842.1	EMBL	gene	2400702	2401700	.	+	.	ID=gene2112;Name=YPO2132;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2132
AL590842.1	EMBL	CDS	2400702	2401700	.	+	0	ID=cds2075;Parent=gene2112;Dbxref=UniProtKB/TrEMBL:Q0WF28,NCBI_GP:CAL20766.1;Name=CAL20766.1;Note=No significant database matches to the full length CDS. Weak similarity to internal region of oat chlorotic stunt virus coat protein TR:Q83928 (EMBL:X83964) (454 aa) fasta scores: E(): 1.4%2C 22.1%25 id in 339 aa;gbkey=CDS;inference=similar to sequence:INSDC:X83964;product=hypothetical phage protein;protein_id=CAL20766.1;transl_table=11
AL590842.1	EMBL	gene	2401717	2402634	.	+	.	ID=gene2113;Name=YPO2133;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2133
AL590842.1	EMBL	CDS	2401717	2402634	.	+	0	ID=cds2076;Parent=gene2113;Dbxref=UniProtKB/TrEMBL:Q7CIG1,NCBI_GP:CAL20767.1;Name=CAL20767.1;Note=No significant database matches to the full length CDS. N-terminal region is similar to N-terminus of Yersinia pestis putative phage tail protein YPMT1.04C TR:Q9RIE3 (EMBL:AL117211) (962 aa) fasta scores: E(): 0.00028%2C 24.4%25 id in 193 aa%2C and to bacteriophage N15 protein gp25 TR:O64338 (EMBL:AF064539) (470 aa) fasta scores: E(): 0.014%2C 24.8%25 id in 137 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL117211;product=hypothetical phage protein;protein_id=CAL20767.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2402636	2402639	.	+	.	ID=id4896;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2402645	2403064	.	+	.	ID=gene2114;Name=YPO2134;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2134
AL590842.1	EMBL	CDS	2402645	2403064	.	+	0	ID=cds2077;Parent=gene2114;Dbxref=InterPro:IPR003458,UniProtKB/TrEMBL:Q7CIG2,NCBI_GP:CAL20768.1;Name=CAL20768.1;Note=Similar to bacteriophage APSE-1 probable tail fiber assembly protein 37 SW:TFA_BPAPS (Q9T1R1) (155 aa) fasta scores: E(): 9.9e-08%2C 30.5%25 id in 151 aa. C-terminal region of the CDS is similar to the C-terminus of bacteriophage lambda tail fiber assembly protein Tfa SW:TFA_LAMBD (P03740) (194 aa) fasta scores: E(): 7.9e-06%2C 33.7%25 id in 98 aa;gbkey=CDS;product=putative phage tail fiber assembly protein;protein_id=CAL20768.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2402714	2403061	.	+	.	ID=id4897;Note=Pfam match to entry PF02413 DUF144%2C %2C score 32.40%2CE-value 1.1e-05;gbkey=misc_feature;inference=protein motif:PF02413
AL590842.1	EMBL	gene	2403061	2403216	.	+	.	ID=gene2115;Name=YPO2135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2135
AL590842.1	EMBL	CDS	2403061	2403216	.	+	0	ID=cds2078;Parent=gene2115;Dbxref=UniProtKB/TrEMBL:Q0WF25,NCBI_GP:CAL20769.1;Name=CAL20769.1;Note=No significant database matches;gbkey=CDS;product=hypothetical phage protein;protein_id=CAL20769.1;transl_table=11
AL590842.1	EMBL	repeat_region	2403250	2404564	.	-	.	ID=id4898;Note=insertion sequence:IS285;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	2403250	2403278	.	+	.	ID=id4899;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	2403285	2404493	.	-	.	ID=gene2116;Name=y1062;gbkey=Gene;gene=y1062;gene_biotype=protein_coding;gene_synonym=ypmt1.80C;locus_tag=YPO2136
AL590842.1	EMBL	CDS	2403285	2404493	.	-	0	ID=cds2079;Parent=gene2116;Dbxref=GOA:O68779,InterPro:IPR001207,UniProtKB/TrEMBL:O68779,NCBI_GP:CAL20770.1;Name=CAL20770.1;Note=Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa.;gbkey=CDS;gene=y1062;inference=similar to sequence:INSDC:AF053947;product=transposase for the IS285 insertion element;protein_id=CAL20770.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2403357	2404493	.	-	.	ID=id4900;Note=Pfam match to entry PF00872 Transpo_mutator%2CTransposase%2C Mutator family%2C score 430.40%2C E-value 1.6e-125;gbkey=misc_feature;gene=y1062;inference=protein motif:PF00872
AL590842.1	EMBL	sequence_feature	2403726	2403800	.	-	.	ID=id4901;Note=PS01007 Transposases%2C Mutator family%2C signature.;gbkey=misc_feature;gene=y1062;inference=protein motif:ProSite:PS01007
AL590842.1	EMBL	INVERTED	2404536	2404564	.	-	.	ID=id4902;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	2404798	2405970	.	-	.	ID=gene2117;Name=YPO2137;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2137
AL590842.1	EMBL	CDS	2404798	2405970	.	-	0	ID=cds2080;Parent=gene2117;Dbxref=GOA:Q7CIG4,InterPro:IPR011701,InterPro:IPR016196,UniProtKB/TrEMBL:Q7CIG4,NCBI_GP:CAL20771.1;Name=CAL20771.1;Note=Similar to Staphylococcus aureus hypothetical protein SA2250 TR:Q9ZGN7 (EMBL:AF076683) (397 aa) fasta scores: E(): 4.5e-08%2C 21.6%25 id in 399 aa%2C and to Escherichia coli hypothetical protein YhhS SW:YHHS_ECOLI (P37621) (419 aa) fasta scores: E(): 8.4e-08%2C 22.8%25 id in 400 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF076683;product=conserved hypothetical phage protein;protein_id=CAL20771.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2404837	2404893	.	-	.	ID=id4903;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2404909	2404974	.	-	.	ID=id4904;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2405014	2405079	.	-	.	ID=id4905;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2405092	2405157	.	-	.	ID=id4906;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2405194	2405259	.	-	.	ID=id4907;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2405290	2405346	.	-	.	ID=id4908;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2405431	2405496	.	-	.	ID=id4909;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2405512	2405577	.	-	.	ID=id4910;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2405614	2405679	.	-	.	ID=id4911;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2405695	2405760	.	-	.	ID=id4912;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2405782	2405838	.	-	.	ID=id4913;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2405884	2405949	.	-	.	ID=id4914;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2405974	2407173	.	-	.	ID=gene2118;Name=YPO2138;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2138
AL590842.1	EMBL	CDS	2405974	2407173	.	-	0	ID=cds2081;Parent=gene2118;Dbxref=GOA:Q7CIG5,InterPro:IPR000192,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR016454,UniProtKB/TrEMBL:Q7CIG5,NCBI_GP:CAL20772.1;Name=CAL20772.1;Note=Similar to Mus musculus cysteine desulfurase%2Cmitochondrial precursor NifS TR:Q9Z1J3 (EMBL:AJ222660) (459 aa) fasta scores: E(): 0%2C 48.4%25 id in 384 aa%2C and to Schizosaccharomyces pombe probable cysteine desulfurase%2Cmitochondrial precursor SPBC21d10.11C TR:O74351 (EMBL:AL031536) (498 aa) fasta scores: E(): 0%2C 48.4%25 id in 384 aa. CDS is similar to YPO2896 (409 aa) fasta scores: E(): 0%2C 51.3%25 identity in 386 aa overlap;gbkey=CDS;inference=similar to sequence:INSDC:AL031536;product=putative aminotransferase;protein_id=CAL20772.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2406061	2407122	.	-	.	ID=id4915;Note=Pfam match to entry PF00266 aminotran_5%2CAminotransferases class-V%2C score 353.90%2C E-value 1.7e-102;gbkey=misc_feature;inference=protein motif:PF00266
AL590842.1	EMBL	ribosome_entry_site	2405979	2405984	.	-	.	ID=id4916;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2407190	2407930	.	-	.	ID=gene2119;Name=YPO2139;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2139
AL590842.1	EMBL	CDS	2407190	2407930	.	-	0	ID=cds2082;Parent=gene2119;Dbxref=UniProtKB/TrEMBL:Q0WF21,NCBI_GP:CAL20773.1;Name=CAL20773.1;Note=No significant database matches;gbkey=CDS;product=hypothetical phage protein;protein_id=CAL20773.1;transl_table=11
AL590842.1	EMBL	gene	2409022	2409378	.	+	.	ID=gene2120;Name=YPO2140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2140
AL590842.1	EMBL	CDS	2409022	2409378	.	+	0	ID=cds2083;Parent=gene2120;Dbxref=UniProtKB/TrEMBL:Q7CIG6,NCBI_GP:CAL20774.1;Name=CAL20774.1;Note=No significant database matches;gbkey=CDS;product=hypothetical phage protein;protein_id=CAL20774.1;transl_table=11
AL590842.1	EMBL	gene	2409795	2410325	.	-	.	ID=gene2121;Name=dsbB;gbkey=Gene;gene=dsbB;gene_biotype=protein_coding;gene_synonym=roxB;locus_tag=YPO2141
AL590842.1	EMBL	CDS	2409795	2410325	.	-	0	ID=cds2084;Parent=gene2121;Dbxref=GOA:Q8ZEM1,InterPro:IPR003752,InterPro:IPR022920,InterPro:IPR023380,NCBI_GP:CAL20775.1;Name=CAL20775.1;Note=Similar to Escherichia coli disulfide bond formation protein B DsbB SW:DSBB_ECOLI (P30018) (176 aa) fasta scores: E(): 0%2C 73.3%25 id in 176 aa%2C and to Shigella flexneri disulfide bond formation protein B DsbB SW:DSBB_SHIFL (Q54155) (176 aa) fasta scores: E(): 0%2C 71.6%25 id in 176 aa;gbkey=CDS;gene=dsbB;inference=protein motif:TMHMM:2.0;product=disulfide bond formation protein B;protein_id=CAL20775.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2409828	2409893	.	-	.	ID=id4917;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=dsbB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2410047	2410112	.	-	.	ID=id4918;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=dsbB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2410134	2410190	.	-	.	ID=id4919;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=dsbB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2410221	2410286	.	-	.	ID=id4920;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=dsbB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2410561	2412135	.	-	.	ID=gene2122;Name=nhaB;gbkey=Gene;gene=nhaB;gene_biotype=protein_coding;locus_tag=YPO2142
AL590842.1	EMBL	CDS	2410561	2412135	.	-	0	ID=cds2085;Parent=gene2122;Dbxref=GOA:Q74U12,InterPro:IPR004671,NCBI_GP:CAL20776.1;Name=CAL20776.1;Note=Similar to Escherichia coli Na+/H+ antiporter NhaB SW:NHAB_ECOLI (P27377) (513 aa) fasta scores: E(): 0%2C 75.6%25 id in 513 aa%2C and to Haemophilus influenzae Na+/H+ antiporter NhaB SW:NHAB_HAEIN (P44706) (522 aa) fasta scores: E(): 0%2C 69.9%25 id in 515 aa;gbkey=CDS;gene=nhaB;inference=protein motif:TMHMM:2.0;product=Na+/H+ antiporter;protein_id=CAL20776.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2410630	2410695	.	-	.	ID=id4921;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=nhaB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2410717	2410773	.	-	.	ID=id4922;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=nhaB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2411014	2411079	.	-	.	ID=id4923;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=nhaB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2411101	2411166	.	-	.	ID=id4924;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=nhaB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2411179	2411235	.	-	.	ID=id4925;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=nhaB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2411353	2411418	.	-	.	ID=id4926;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=nhaB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2411641	2411742	.	-	.	ID=id4927;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=nhaB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2411782	2411847	.	-	.	ID=id4928;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=nhaB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2411986	2412051	.	-	.	ID=id4929;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=nhaB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2412379	2413098	.	+	.	ID=gene2123;Name=fadR;gbkey=Gene;gene=fadR;gene_biotype=protein_coding;gene_synonym=oleR,thdB;locus_tag=YPO2144
AL590842.1	EMBL	CDS	2412379	2413098	.	+	0	ID=cds2086;Parent=gene2123;Dbxref=GOA:Q8ZEL9,InterPro:IPR000524,InterPro:IPR008920,InterPro:IPR011991,InterPro:IPR014178,InterPro:IPR028374,NCBI_GP:CAL20777.1;Name=CAL20777.1;Note=Similar to Escherichia coli fatty acid metabolism regulator protein FadR SW:FADR_ECOLI (P09371) (238 aa) fasta scores: E(): 0%2C 82.1%25 id in 234 aa%2C and to Pasteurella multocida possible fatty acid metabolism regulator protein FadR TR:AAK02132 (EMBL:AE006038) (241 aa) fasta scores: E(): 0%2C 64.3%25 id in 235 aa;gbkey=CDS;gene=fadR;inference=similar to sequence:INSDC:AE006038;product=fatty acid metabolism regulatory protein;protein_id=CAL20777.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2412469	2412591	.	+	.	ID=id4930;Note=Pfam match to entry PF00392 gntR%2C Bacterial regulatory proteins%2C gntR family%2C score 67.40%2C E-value 2.8e-19;gbkey=misc_feature;gene=fadR;inference=protein motif:PF00392
AL590842.1	EMBL	gene	2413316	2414851	.	-	.	ID=gene2124;Name=YPO2145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2145
AL590842.1	EMBL	CDS	2413316	2414851	.	-	0	ID=cds2087;Parent=gene2124;Dbxref=InterPro:IPR007390,UniProtKB/TrEMBL:Q7CIG7,NCBI_GP:CAL20778.1;Name=CAL20778.1;Note=Similar to Escherichia coli hypothetical protein YcgB SW:YCGB_ECOLI (P29013) (510 aa) fasta scores: E(): 0%2C84.6%25 id in 508 aa%2C and to Vibrio cholerae hypothetical protein VC1874 vc1874 TR:Q9KQX3 (EMBL:AE004263) (516 aa) fasta scores: E(): 0%2C 73.5%25 id in 501 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004263;product=conserved hypothetical protein;protein_id=CAL20778.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2415307	2415310	.	+	.	ID=id4931;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2415316	2416620	.	+	.	ID=gene2125;Name=dadA;gbkey=Gene;gene=dadA;gene_biotype=protein_coding;gene_synonym=dadR;locus_tag=YPO2147
AL590842.1	EMBL	CDS	2415316	2416620	.	+	0	ID=cds2088;Parent=gene2125;Dbxref=GOA:Q8ZEL7,InterPro:IPR006076,InterPro:IPR023080,NCBI_GP:CAL20779.1;Name=CAL20779.1;Note=Similar to Escherichia coli D-amino acid dehydrogenase small subunit DadA SW:DADA_ECOLI (P29011) (432 aa) fasta scores: E(): 0%2C 78.2%25 id in 431 aa%2C and to Klebsiella aerogenes D-amino acid dehydrogenase DadA TR:O30745 (EMBL:AF016253) (432 aa) fasta scores: E(): 0%2C77.7%25 id in 431 aa;gbkey=CDS;gene=dadA;inference=similar to sequence:INSDC:AF016253;product=D-amino acid dehydrogenase small subunit;protein_id=CAL20779.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2415316	2416515	.	+	.	ID=id4932;Note=Pfam match to entry PF01266 DAO%2C D-amino acid oxidase%2C score -67.30%2C E-value 0.00035;gbkey=misc_feature;gene=dadA;inference=protein motif:PF01266
AL590842.1	EMBL	gene	2416636	2417838	.	-	.	ID=gene2126;Name=YPO2148;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2148
AL590842.1	EMBL	CDS	2416636	2417838	.	-	0	ID=cds2089;Parent=gene2126;Dbxref=GOA:Q7CIG8,InterPro:IPR001958,InterPro:IPR004812,InterPro:IPR005829,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q7CIG8,NCBI_GP:CAL20780.1;Name=CAL20780.1;Note=Similar to Escherichia coli florfenicol exporter FloR TR:AAG16656 (EMBL:AF231986) (404 aa) fasta scores: E(): 4.4e-29%2C 31.4%25 id in 357 aa%2C and to Vibrio cholerae putative multidrug resistance protein VC0069 TR:Q9KVS0 (EMBL:AE004098) (400 aa) fasta scores: E(): 0%2C 37.2%25 id in 371 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF231986;product=putative multidrug resistance protein;protein_id=CAL20780.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2416663	2417832	.	-	.	ID=id4933;Note=Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporter%2C score -61.60%2C E-value 0.00012;gbkey=misc_feature;inference=protein motif:PF00083
AL590842.1	EMBL	sequence_feature	2416753	2416818	.	-	.	ID=id4934;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2416855	2416920	.	-	.	ID=id4935;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2416966	2417022	.	-	.	ID=id4936;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2417062	2417127	.	-	.	ID=id4937;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2417158	2417223	.	-	.	ID=id4938;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2417305	2417370	.	-	.	ID=id4939;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2417386	2417451	.	-	.	ID=id4940;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2417491	2417541	.	-	.	ID=id4941;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2417572	2417628	.	-	.	ID=id4942;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2417617	2417667	.	-	.	ID=id4943;Note=PS00216 Sugar transport proteins signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS00216
AL590842.1	EMBL	sequence_feature	2417656	2417721	.	-	.	ID=id4944;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2417752	2417817	.	-	.	ID=id4945;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2418103	2418972	.	-	.	ID=gene2127;Name=YPO2149;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2149
AL590842.1	EMBL	CDS	2418103	2418972	.	-	0	ID=cds2090;Parent=gene2127;Dbxref=InterPro:IPR003829,InterPro:IPR008778,InterPro:IPR011051,InterPro:IPR012093,InterPro:IPR014710,UniProtKB/TrEMBL:Q74U09,NCBI_GP:CAL20781.1;Name=CAL20781.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA2418 TR:AAG05806 (EMBL:AE004669) (286 aa) fasta scores: E(): 0%2C 65.0%25 id in 283 aa%2C and to Streptomyces coelicolor possible chromosome condensation protein SCAC2.06C TR:CAC08479 (EMBL:AL392189) (325 aa) fasta scores: E(): 0%2C 40.1%25 id in 297 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL392189;product=conserved hypothetical protein;protein_id=CAL20781.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2418979	2418984	.	-	.	ID=id4946;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	ribosome_entry_site	2419161	2419164	.	+	.	ID=id4947;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2419170	2420075	.	+	.	ID=gene2128;Name=YPO2150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2150
AL590842.1	EMBL	CDS	2419170	2420075	.	+	0	ID=cds2091;Parent=gene2128;Dbxref=GOA:Q0WF12,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q0WF12,NCBI_GP:CAL20782.1;Name=CAL20782.1;Note=Similar to Pseudomonas aeruginosa probable transcriptional regulator PA2417 TR:AAG05805 (EMBL:AE004669) (312 aa) fasta scores: E(): 0%2C 48.8%25 id in 299 aa%2C and to Pseudomonas aeruginosa probable transcriptional regulator PA1961 TR:AAG05349 (EMBL:AE004622) (311 aa) fasta scores: E(): 0%2C 41.3%25 id in 293 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004669;product=LysR-family transcriptional regulatory protein;protein_id=CAL20782.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2419179	2419598	.	+	.	ID=id4948;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 126.80%2C E-value 4e-34;gbkey=misc_feature;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	2419218	2419283	.	+	.	ID=id4949;Note=Predicted helix-turn-helix motif with score 1228 (+3.37 SD) at aa 17-38%2C sequence GGFSAAARVLGLPKSKLSRRLA;gbkey=misc_feature
AL590842.1	EMBL	gene	2420110	2421231	.	-	.	ID=gene2129;Name=YPO2151;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2151
AL590842.1	EMBL	CDS	2420110	2421231	.	-	0	ID=cds2092;Parent=gene2129;Dbxref=GOA:Q7CIG9,InterPro:IPR000620,UniProtKB/TrEMBL:Q7CIG9,NCBI_GP:CAL20783.1;Name=CAL20783.1;Note=Similar to Ralstonia metallidurans putative nickel transport protein CnrT TR:Q9L3G0 (EMBL:AJ276513) (351 aa) fasta scores: E(): 0%2C 55.1%25 id in 352 aa%2C and to Methanobacterium thermoautotrophicum hypothetical protein MTH841 SW:Y841_METTH (O26929) (343 aa) fasta scores: E(): 8.2e-14%2C 30.3%25 id in 294 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ276513;product=putative membrane protein;protein_id=CAL20783.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2420347	2420712	.	-	.	ID=id4950;Note=Pfam match to entry PF00892 DUF6%2C Integral membrane protein DUF6%2C score 36.60%2C E-value 5.5e-07;gbkey=misc_feature;inference=protein motif:PF00892
AL590842.1	EMBL	sequence_feature	2420350	2420406	.	-	.	ID=id4951;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2420419	2420469	.	-	.	ID=id4952;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2420497	2420562	.	-	.	ID=id4953;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2420593	2420658	.	-	.	ID=id4954;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2420698	2420748	.	-	.	ID=id4955;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2420794	2421171	.	-	.	ID=id4956;Note=Pfam match to entry PF00892 DUF6%2C Integral membrane protein DUF6%2C score 62.30%2C E-value 1.1e-14;gbkey=misc_feature;inference=protein motif:PF00892
AL590842.1	EMBL	sequence_feature	2420794	2420844	.	-	.	ID=id4957;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2420866	2420931	.	-	.	ID=id4958;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2420947	2421012	.	-	.	ID=id4959;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2421049	2421114	.	-	.	ID=id4960;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2421145	2421210	.	-	.	ID=id4961;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	repeat_region	2420116	2420152	.	-	.	ID=id4962;Note=repeat region with 2.5xCTTATGTTGATGATA repeat.;gbkey=repeat_region
AL590842.1	EMBL	gene	2421336	2422610	.	-	.	ID=gene2130;Name=YPO2152;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2152
AL590842.1	EMBL	CDS	2421336	2422610	.	-	0	ID=cds2093;Parent=gene2130;Dbxref=InterPro:IPR006698,NCBI_GP:CAL20784.1;Name=CAL20784.1;Note=Similar to Escherichia coli hypothetical protein YeaH SW:YEAH_ECOLI (P76235) (427 aa) fasta scores: E(): 0%2C86.7%25 id in 421 aa%2C and to Vibrio cholerae hypothetical protein VC1873 vc1873 TR:Q9KQX4 (EMBL:AE004263) (423 aa) fasta scores: E(): 0%2C 72.7%25 id in 421 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004263;product=conserved hypothetical protein;protein_id=CAL20784.1;transl_table=11
AL590842.1	EMBL	gene	2422760	2424694	.	-	.	ID=gene2131;Name=YPO2153;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2153
AL590842.1	EMBL	CDS	2422760	2424694	.	-	0	ID=cds2094;Parent=gene2131;Dbxref=GOA:Q7CIH0,InterPro:IPR010650,InterPro:IPR013153,InterPro:IPR016230,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CIH0,NCBI_GP:CAL20785.1;Name=CAL20785.1;Note=Similar to Escherichia coli hypothetical protein YeaG SW:YEAG_ECOLI (P77391) (644 aa) fasta scores: E(): 0%2C94.4%25 id in 644 aa%2C and to Vibrio cholerae hypothetical protein VC1872 vc1872 TR:Q9KQX5 (EMBL:AE004263) (644 aa) fasta scores: E(): 0%2C 84.0%25 id in 644 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004263;product=conserved hypothetical protein;protein_id=CAL20785.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2424344	2424367	.	-	.	ID=id4963;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2425117	2425887	.	+	.	ID=gene2132;Name=YPO2155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2155
AL590842.1	EMBL	CDS	2425117	2425887	.	+	0	ID=cds2095;Parent=gene2132;Dbxref=InterPro:IPR010583,InterPro:IPR017690,UniProtKB/TrEMBL:Q7CIH1,NCBI_GP:CAL20786.1;Name=CAL20786.1;Note=Similar to Escherichia coli hypothetical protein YeaF SW:YEAF_ECOLI () (248 aa) fasta scores: E(): 0%2C 56.6%25 id in 249 aa%2C and to Escherichia coli putative outer membrane protein YiaT SW:YIAT_ECOLI (P37681) (246 aa) fasta scores: E(): 0%2C 41.6%25 id in 231 aa%3B~Similar to Escherichia coli hypothetical protein YeaF SW:YEAF_ECOLI (EMBL:AE000273) (248 aa) fasta scores: E(): 0%2C 56.6%25 id in 249 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL20786.1;transl_table=11
AL590842.1	EMBL	gene	2425960	2426835	.	-	.	ID=gene2133;Name=YPO2156;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2156
AL590842.1	EMBL	CDS	2425960	2426835	.	-	0	ID=cds2096;Parent=gene2133;Dbxref=GOA:Q7CIH2,InterPro:IPR008183,InterPro:IPR011013,InterPro:IPR014718,InterPro:IPR025532,UniProtKB/TrEMBL:Q7CIH2,NCBI_GP:CAL20787.1;Name=CAL20787.1;Note=Similar to Escherichia coli hypothetical protein YeaD SW:UP08_ECOLI (P39173) (294 aa) fasta scores: E(): 0%2C55.6%25 id in 293 aa%2C and to Vibrio cholerae hypothetical protein VC2001 TR:Q9KQJ7 (EMBL:AE004274) (296 aa) fasta scores: E(): 0%2C 37.7%25 id in 273 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004274;product=conserved hypothetical protein;protein_id=CAL20787.1;transl_table=11
AL590842.1	EMBL	gene	2427149	2428153	.	-	.	ID=gene2134;Name=gapA;gbkey=Gene;gene=gapA;gene_biotype=protein_coding;locus_tag=YPO2157
AL590842.1	EMBL	CDS	2427149	2428153	.	-	0	ID=cds2097;Parent=gene2134;Dbxref=GOA:Q7CIH3,InterPro:IPR006424,InterPro:IPR016040,InterPro:IPR020828,InterPro:IPR020829,InterPro:IPR020830,InterPro:IPR020831,UniProtKB/TrEMBL:Q7CIH3,NCBI_GP:CAL20788.1;Name=CAL20788.1;Note=Similar to Escherichia coli glyceraldehyde 3-phosphate dehydrogenase A GapA SW:G3P1_ECOLI (P06977) (330 aa) fasta scores: E(): 0%2C 90.9%25 id in 330 aa%2C and to Trypanosoma brucei brucei cytosolic glyceraldehyde 3-phosphate dehydrogenase SW:G3PC_TRYBB (P10097) (330 aa) fasta scores: E(): 0%2C 84.8%25 id in 329 aa;gbkey=CDS;gene=gapA;product=glyceraldehyde 3-phosphate dehydrogenase A;protein_id=CAL20788.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2427152	2428141	.	-	.	ID=id4964;Note=Pfam match to entry PF00044 gpdh%2C glyceraldehyde 3-phosphate dehydrogenases%2C score 811.60%2C E-value 4.3e-242;gbkey=misc_feature;gene=gapA;inference=protein motif:PF00044
AL590842.1	EMBL	sequence_feature	2427680	2427703	.	-	.	ID=id4965;Note=PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site.;gbkey=misc_feature;gene=gapA;inference=protein motif:ProSite:PS00071
AL590842.1	EMBL	gene	2428492	2428905	.	+	.	ID=gene2135;Name=YPO2158;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2158
AL590842.1	EMBL	CDS	2428492	2428905	.	+	0	ID=cds2098;Parent=gene2135;Dbxref=GOA:Q8ZEK7,InterPro:IPR002579,InterPro:IPR011057,InterPro:IPR028427,NCBI_GP:CAL20789.1;Name=CAL20789.1;Note=Similar to Escherichia coli hypothetical protein YeaA SW:YEAA_ECOLI (P39903) (137 aa) fasta scores: E(): 0%2C69.3%25 id in 137 aa%2C and to Pasteurella multocida hypothetical protein PM0923 TR:AAK03007 (EMBL:AE006131) (130 aa) fasta scores: E(): 4.1e-32%2C 57.1%25 id in 126 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE006131;product=conserved hypothetical protein;protein_id=CAL20789.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2428510	2428878	.	+	.	ID=id4966;Note=Pfam match to entry PF01641 DUF25%2C Domain of unknown function DUF25%2C score 274.80%2C E-value 1.2e-78;gbkey=misc_feature;inference=protein motif:PF01641
AL590842.1	EMBL	ribosome_entry_site	2428964	2428967	.	+	.	ID=id4967;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2428976	2429248	.	+	.	ID=gene2136;Name=YPO2159;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2159
AL590842.1	EMBL	CDS	2428976	2429248	.	+	0	ID=cds2099;Parent=gene2136;Dbxref=InterPro:IPR009749,UniProtKB/TrEMBL:Q0WF04,NCBI_GP:CAL20790.1;Name=CAL20790.1;Note=Similar to Escherichia coli hypothetical protein YeaC SW:YEAC_ECOLI (P76231) (90 aa) fasta scores: E(): 7.7e-23%2C 70.7%25 id in 82 aa%2C and to Vibrio cholerae hypothetical protein VC1996 TR:Q9KQK2 (EMBL:AE004274) (95 aa) fasta scores: E(): 1.5e-16%2C 46.2%25 id in 91 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004274;product=conserved hypothetical protein;protein_id=CAL20790.1;transl_table=11
AL590842.1	EMBL	gene	2429382	2430029	.	-	.	ID=gene2137;Name=nam;gbkey=Gene;gene=nam;gene_biotype=protein_coding;gene_synonym=pncA;locus_tag=YPO2160
AL590842.1	EMBL	CDS	2429382	2430029	.	-	0	ID=cds2100;Parent=gene2137;Dbxref=GOA:Q7CIH4,InterPro:IPR000868,UniProtKB/TrEMBL:Q7CIH4,NCBI_GP:CAL20791.1;Name=CAL20791.1;Note=Similar to Escherichia coli pyrazinamidase/nicotinamidase [includes: pyrazinamidase (EC 3.5.1.*) (PZAse)%3B nicotinamidase(EC 3.5.1.19) (nicotine deamidase)] PncA SW:PNCA_ECOLI (P21369) (213 aa) fasta scores: E(): 0%2C 65.2%25 id in 201 aa%2C and to Vibrio cholerae pyrazinamidase/nicotinamidase vca0712 TR:Q9KLN1 (EMBL:AE004400) (206 aa) fasta scores: E(): 0%2C 48.3%25 id in 209 aa;gbkey=CDS;gene=nam;inference=similar to sequence:INSDC:AE004400;product=putative pyrazinamidase/nicotinamidase;protein_id=CAL20791.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2429466	2430017	.	-	.	ID=id4968;Note=Pfam match to entry PF00857 Isochorismatase%2CIsochorismatase family%2C score 154.90%2C E-value 1.4e-42;gbkey=misc_feature;gene=nam;inference=protein motif:PF00857
AL590842.1	EMBL	gene	2430044	2431060	.	-	.	ID=gene2138;Name=ansA;gbkey=Gene;gene=ansA;gene_biotype=protein_coding;locus_tag=YPO2161
AL590842.1	EMBL	CDS	2430044	2431060	.	-	0	ID=cds2101;Parent=gene2138;Dbxref=GOA:Q7CIH5,InterPro:IPR006033,InterPro:IPR006034,InterPro:IPR020827,InterPro:IPR027473,InterPro:IPR027474,InterPro:IPR027475,PDB:3NTX,UniProtKB/TrEMBL:Q7CIH5,NCBI_GP:CAL20792.1;Name=CAL20792.1;Note=Similar to Escherichia coli L-asparaginase I AnsA SW:ASG1_ECOLI (P18840) (338 aa) fasta scores: E(): 0%2C 83.3%25 id in 335 aa%2C and to Vibrio cholerae L-asparaginase I VC1995 TR:Q9KQK3 (EMBL:AE004274) (337 aa) fasta scores: E(): 0%2C 71.4%25 id in 336 aa;gbkey=CDS;gene=ansA;inference=similar to sequence:INSDC:AE004274;product=L-asparaginase I;protein_id=CAL20792.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2430089	2431033	.	-	.	ID=id4969;Note=Pfam match to entry PF00710 Asparaginase%2CAsparaginase%2C score 413.80%2C E-value 1.6e-120;gbkey=misc_feature;gene=ansA;inference=protein motif:PF00710
AL590842.1	EMBL	sequence_feature	2430779	2430811	.	-	.	ID=id4970;Note=PS00917 Asparaginase / glutaminase active site signature 2.;gbkey=misc_feature;gene=ansA;inference=protein motif:ProSite:PS00917
AL590842.1	EMBL	sequence_feature	2431013	2431039	.	-	.	ID=id4971;Note=PS00144 Asparaginase / glutaminase active site signature 1.;gbkey=misc_feature;gene=ansA;inference=protein motif:ProSite:PS00144
AL590842.1	EMBL	gene	2431177	2433027	.	-	.	ID=gene2139;Name=sppA;gbkey=Gene;gene=sppA;gene_biotype=protein_coding;locus_tag=YPO2162
AL590842.1	EMBL	CDS	2431177	2433027	.	-	0	ID=cds2102;Parent=gene2139;Dbxref=GOA:Q7CIH6,InterPro:IPR002142,InterPro:IPR004634,InterPro:IPR004635,InterPro:IPR029045,UniProtKB/TrEMBL:Q7CIH6,NCBI_GP:CAL20793.1;Name=CAL20793.1;Note=Similar to Escherichia coli protease IV SppA SW:SPPA_ECOLI (P08395) (618 aa) fasta scores: E(): 0%2C 67.7%25 id in 619 aa%2C and to Vibrio cholerae protease IV VC1994 TR:Q9KQK4 (EMBL:AE004274) (616 aa) fasta scores: E(): 0%2C47.5%25 id in 617 aa;gbkey=CDS;gene=sppA;inference=similar to sequence:INSDC:AE004274;product=protease IV;protein_id=CAL20793.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2431405	2431863	.	-	.	ID=id4972;Note=Pfam match to entry PF01343 Peptidase_U7%2C Peptidase family U7%2C score 236.60%2C E-value 3.4e-67;gbkey=misc_feature;gene=sppA;inference=protein motif:PF01343
AL590842.1	EMBL	sequence_feature	2432146	2432616	.	-	.	ID=id4973;Note=Pfam match to entry PF01343 Peptidase_U7%2C Peptidase family U7%2C score 144.50%2C E-value 1.8e-39;gbkey=misc_feature;gene=sppA;inference=protein motif:PF01343
AL590842.1	EMBL	sequence_feature	2432899	2432964	.	-	.	ID=id4974;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=sppA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	ribosome_entry_site	2433178	2433183	.	+	.	ID=id4975;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2433190	2433741	.	+	.	ID=gene2140;Name=YPO2163;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2163
AL590842.1	EMBL	CDS	2433190	2433741	.	+	0	ID=cds2103;Parent=gene2140;Dbxref=GOA:Q7CIH7,InterPro:IPR000415,InterPro:IPR026021,InterPro:IPR029479,UniProtKB/TrEMBL:Q7CIH7,NCBI_GP:CAL20794.1;Name=CAL20794.1;Note=Similar to Escherichia coli hypothetical protein YdjA SW:YDJA_ECOLI (P24250) (183 aa) fasta scores: E(): 0%2C65.0%25 id in 183 aa%2C and to Vibrio cholerae hypothetical protein VC1048 vc1048 TR:Q9KT57 (EMBL:AE004186) (182 aa) fasta scores: E(): 0%2C 59.6%25 id in 183 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004186;product=putative nitroreductase;protein_id=CAL20794.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2433193	2433630	.	+	.	ID=id4976;Note=Pfam match to entry PF00881 Nitroreductase%2CNitroreductase family%2C score 111.40%2C E-value 1.7e-29;gbkey=misc_feature;inference=protein motif:PF00881
AL590842.1	EMBL	ribosome_entry_site	2433956	2433959	.	+	.	ID=id4977;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2433966	2435012	.	+	.	ID=gene2141;Name=fdhB;gbkey=Gene;gene=fdhB;gene_biotype=protein_coding;gene_synonym=selD;locus_tag=YPO2164
AL590842.1	EMBL	CDS	2433966	2435012	.	+	0	ID=cds2104;Parent=gene2141;Dbxref=GOA:Q8ZEK1,InterPro:IPR000728,InterPro:IPR004536,InterPro:IPR010918,InterPro:IPR016188,InterPro:IPR023061,NCBI_GP:CAL20795.1;Name=CAL20795.1;Note=Similar to Escherichia coli selenide%2C water dikinase (selenophosphate synthetase) SelD SW:SELD_ECOLI (P16456) (347 aa) fasta scores: E(): 0%2C 75.4%25 id in 346 aa%2C and to Haemophilus influenzae selenide%2C water dikinase SelD SW:SELD_HAEIN (P43911) (348 aa) fasta scores: E(): 0%2C 66.8%25 id in 343 aa;gbkey=CDS;gene=fdhB;product=selenide%2C water dikinase;protein_id=CAL20795.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2433990	2434022	.	+	.	ID=id4978;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=fdhB;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	2434053	2434910	.	+	.	ID=id4979;Note=Pfam match to entry PF00586 AIRS%2C AIR synthase related protein%2C score 140.50%2C E-value 3e-38;gbkey=misc_feature;gene=fdhB;inference=protein motif:PF00586
AL590842.1	EMBL	gene	2435071	2436999	.	+	.	ID=gene2142;Name=topB;gbkey=Gene;gene=topB;gene_biotype=protein_coding;locus_tag=YPO2165
AL590842.1	EMBL	CDS	2435071	2436999	.	+	0	ID=cds2105;Parent=gene2142;Dbxref=GOA:Q0WEZ8,InterPro:IPR000380,InterPro:IPR003601,InterPro:IPR003602,InterPro:IPR005738,InterPro:IPR006171,InterPro:IPR013497,InterPro:IPR013824,InterPro:IPR013825,InterPro:IPR023405,InterPro:IPR023406,UniProtKB/TrEMBL:Q0WEZ8,NCBI_GP:CAL20796.1;Name=CAL20796.1;Note=Similar to Escherichia coli DNA topoisomerase III TopB SW:TOP3_ECOLI (P14294) (653 aa) fasta scores: E(): 0%2C82.8%25 id in 641 aa%2C and to Vibrio cholerae DNA topoisomerase III TopB TR:Q9KQF5 (EMBL:AE004278) (647 aa) fasta scores: E(): 0%2C 57.9%25 id in 651 aa;gbkey=CDS;gene=topB;inference=similar to sequence:INSDC:AE004278;product=DNA topoisomerase III;protein_id=CAL20796.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2435074	2435478	.	+	.	ID=id4980;Note=Pfam match to entry PF01751 Toprim%2C Toprim domain%2Cscore 143.50%2C E-value 3.6e-39;gbkey=misc_feature;gene=topB;inference=protein motif:PF01751
AL590842.1	EMBL	sequence_feature	2435524	2436765	.	+	.	ID=id4981;Note=Pfam match to entry PF01131 Topoisom_bac%2CProkaryotic DNA topoisomerase%2C score 598.80%2C E-value 3.4e-176;gbkey=misc_feature;gene=topB;inference=protein motif:PF01131
AL590842.1	EMBL	sequence_feature	2435959	2436024	.	+	.	ID=id4982;Note=Predicted helix-turn-helix motif with score 1028 (+2.69 SD) at aa 297-318%2C sequence TLQIEAAKRFGLSAQQVLDICQ;gbkey=misc_feature;gene=topB
AL590842.1	EMBL	sequence_feature	2436022	2436069	.	+	.	ID=id4983;Note=PS00396 Prokaryotic DNA topoisomerase I active site.;gbkey=misc_feature;gene=topB;inference=protein motif:ProSite:PS00396
AL590842.1	EMBL	ribosome_entry_site	2436980	2436987	.	+	.	ID=id4984;gbkey=regulatory;gene=topB;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2436996	2437286	.	+	.	ID=gene2143;Name=YPO2166;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2166
AL590842.1	EMBL	CDS	2436996	2437286	.	+	0	ID=cds2106;Parent=gene2143;Dbxref=InterPro:IPR009971,UniProtKB/TrEMBL:Q7CIH8,NCBI_GP:CAL20797.1;Name=CAL20797.1;Note=Similar to Escherichia coli hypothetical protein precursor YnjH SW:YNJH_ECOLI (P76227) (90 aa) fasta scores: E(): 3e-13%2C 53.9%25 id in 76 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL20797.1;transl_table=11
AL590842.1	EMBL	gene	2437299	2437685	.	-	.	ID=gene2144;Name=nudG;gbkey=Gene;gene=nudG;gene_biotype=protein_coding;locus_tag=YPO2167
AL590842.1	EMBL	CDS	2437299	2437685	.	-	0	ID=cds2107;Parent=gene2144;Dbxref=GOA:Q7CIH9,InterPro:IPR000086,InterPro:IPR015797,InterPro:IPR020084,InterPro:IPR020476,UniProtKB/TrEMBL:Q7CIH9,NCBI_GP:CAL20798.1;Name=CAL20798.1;Note=Similar to Escherichia coli CTP pyrophosphohydrolase NudG TR:P77788 (EMBL:AE000270) (135 aa) fasta scores: E(): 5e-30%2C 65.4%25 id in 127 aa%2C and to Xylella fastidiosa bifunctional dGTP-pyrophosphohydrolase/thiamine phosphate synthase XF1120 TR:Q9PEA8 (EMBL:AE003948) (320 aa) fasta scores: E(): 2.7e-13%2C 43.3%25 id in 120 aa;gbkey=CDS;gene=nudG;inference=similar to sequence:INSDC:AE003948;product=putative pyrophosphohydrolase;protein_id=CAL20798.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2437308	2437685	.	-	.	ID=id4985;Note=Pfam match to entry PF00293 mutT%2C Bacterial mutT protein%2C score 90.40%2C E-value 3.7e-23;gbkey=misc_feature;gene=nudG;inference=protein motif:PF00293
AL590842.1	EMBL	sequence_feature	2437524	2437583	.	-	.	ID=id4986;Note=PS00893 mutT domain signature.;gbkey=misc_feature;gene=nudG;inference=protein motif:ProSite:PS00893
AL590842.1	EMBL	gene	2437783	2438589	.	-	.	ID=gene2145;Name=xth;gbkey=Gene;gene=xth;gene_biotype=protein_coding;gene_synonym=xthA;locus_tag=YPO2168
AL590842.1	EMBL	CDS	2437783	2438589	.	-	0	ID=cds2108;Parent=gene2145;Dbxref=GOA:Q0WEZ5,InterPro:IPR004808,InterPro:IPR005135,InterPro:IPR020847,InterPro:IPR020848,UniProtKB/TrEMBL:Q0WEZ5,NCBI_GP:CAL20799.1;Name=CAL20799.1;Note=Similar to Escherichia coli exodeoxyribonuclease III XthA SW:EX3_ECOLI (P09030) (268 aa) fasta scores: E(): 0%2C80.1%25 id in 266 aa%2C and to Salmonella typhimurium exodeoxyribonuclease III XthA SW:EX3_SALTY (Q9Z612) (268 aa) fasta scores: E(): 0%2C 78.6%25 id in 266 aa;gbkey=CDS;gene=xth;product=exodeoxyribonuclease III;protein_id=CAL20799.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2437789	2438589	.	-	.	ID=id4987;Note=Pfam match to entry PF01260 AP_endonucleas1%2C AP endonuclease family 1%2C score 395.40%2C E-value 5.7e-115;gbkey=misc_feature;gene=xth;inference=protein motif:PF01260
AL590842.1	EMBL	sequence_feature	2437888	2437923	.	-	.	ID=id4988;Note=PS00728 AP endonucleases family 1 signature 3.;gbkey=misc_feature;gene=xth;inference=protein motif:ProSite:PS00728
AL590842.1	EMBL	sequence_feature	2438482	2438511	.	-	.	ID=id4989;Note=PS00726 AP endonucleases family 1 signature 1.;gbkey=misc_feature;gene=xth;inference=protein motif:ProSite:PS00726
AL590842.1	EMBL	gene	2439399	2440259	.	+	.	ID=gene2146;Name=YPO2169;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2169
AL590842.1	EMBL	CDS	2439399	2440259	.	+	0	ID=cds2109;Parent=gene2146;Dbxref=GOA:Q7CII0,InterPro:IPR000847,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CII0,NCBI_GP:CAL20800.1;Name=CAL20800.1;Note=Similar to Escherichia coli hypothetical transcriptional regulator YgfI SW:YGFI_ECOLI (P52044) (303 aa) fasta scores: E(): 6.1e-05%2C 21.2%25 id in 283 aa%2C and to Aquifex aeolicus transcriptional regulator LysR1 TR:O66882 (EMBL:AE000699) (303 aa) fasta scores: E(): 0.00015%2C 21.9%25 id in 288 aa. CDS DNA has a low G+C content%2C 29.15%25;gbkey=CDS;inference=similar to sequence:INSDC:AE000699;product=putative LysR-family transcriptional regulatory protein;protein_id=CAL20800.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2439408	2439638	.	+	.	ID=id4990;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 72.20%2C E-value 1.1e-17;gbkey=misc_feature;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	2439450	2439542	.	+	.	ID=id4991;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00044
AL590842.1	EMBL	tRNA	2440767	2440851	.	-	.	ID=rna50;Note=tRNA Tyr anticodon GTA%2C Cove score 66.93;gbkey=tRNA;product=tRNA-Tyr
AL590842.1	EMBL	exon	2440767	2440851	.	-	.	ID=id4992;Parent=rna50;Note=tRNA Tyr anticodon GTA%2C Cove score 66.93;gbkey=tRNA;product=tRNA-Tyr
AL590842.1	EMBL	pseudogene	2442377	2443171	.	-	.	ID=gene2147;Name=purU;gbkey=Gene;gene=purU;gene_biotype=pseudogene;gene_synonym=tgs;is_ordered=true;locus_tag=YPO2171;part=1/2;pseudo=true
AL590842.1	EMBL	pseudogene	2441000	2441053	.	-	.	ID=gene2147;Name=purU;gbkey=Gene;gene=purU;gene_biotype=pseudogene;gene_synonym=tgs;is_ordered=true;locus_tag=YPO2171;part=2/2;pseudo=true
AL590842.1	EMBL	CDS	2442377	2443171	.	-	0	ID=cds2110;Parent=gene2147;Dbxref=PSEUDO:CAL20801.1;Note=CDS is disrupted by the insertion of IS285 element after codon 265. The insertion occurred near the C-terminus. It is not clear whether this insertion affects the function of the protein. Similar to Shigella flexneri formyltetrahydrofolate deformylase PurU SW:PURU_SHIFL (P38480) (280 aa) fasta scores: E(): 2.6e-99%2C 85.305%25 id in 279 aa%2C and to Escherichia coli formyltetrahydrofolate deformylase PurU SW:PURU_ECOLI (P37051) (280 aa) fasta scores: E(): 5.5e-99%2C 85.305%25 id in 279 aa;gbkey=CDS;gene=purU;product=formyltetrahydrofolate deformylase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	CDS	2441000	2441053	.	-	0	ID=cds2110;Parent=gene2147;Dbxref=PSEUDO:CAL20801.1;Note=CDS is disrupted by the insertion of IS285 element after codon 265. The insertion occurred near the C-terminus. It is not clear whether this insertion affects the function of the protein. Similar to Shigella flexneri formyltetrahydrofolate deformylase PurU SW:PURU_SHIFL (P38480) (280 aa) fasta scores: E(): 2.6e-99%2C 85.305%25 id in 279 aa%2C and to Escherichia coli formyltetrahydrofolate deformylase PurU SW:PURU_ECOLI (P37051) (280 aa) fasta scores: E(): 5.5e-99%2C 85.305%25 id in 279 aa;gbkey=CDS;gene=purU;product=formyltetrahydrofolate deformylase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	2442380	2442913	.	-	.	ID=id4993;Note=Pfam match to entry PF00551 formyl_transf%2C Formyl transferase%2C score 243.00%2C E-value 4.2e-69;gbkey=misc_feature;gene=purU;inference=protein motif:PF00551
AL590842.1	EMBL	repeat_region	2441060	2442374	.	+	.	ID=id4994;Note=insertion sequence:IS285;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	2441060	2441088	.	+	.	ID=id4995;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	2441131	2442339	.	+	.	ID=gene2148;Name=y1062;gbkey=Gene;gene=y1062;gene_biotype=protein_coding;gene_synonym=ypmt1.80C;locus_tag=YPO2170
AL590842.1	EMBL	CDS	2441131	2442339	.	+	0	ID=cds2111;Parent=gene2148;Dbxref=GOA:O68779,InterPro:IPR001207,UniProtKB/TrEMBL:O68779,NCBI_GP:CAL20802.1;Name=CAL20802.1;Note=Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa.;gbkey=CDS;gene=y1062;inference=similar to sequence:INSDC:AF053947;product=transposase for the IS285 insertion element;protein_id=CAL20802.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2441131	2442267	.	+	.	ID=id4996;Note=Pfam match to entry PF00872 Transpo_mutator%2CTransposase%2C Mutator family%2C score 430.40%2C E-value 1.6e-125;gbkey=misc_feature;gene=y1062;inference=protein motif:PF00872
AL590842.1	EMBL	sequence_feature	2441824	2441898	.	+	.	ID=id4997;Note=PS01007 Transposases%2C Mutator family%2C signature.;gbkey=misc_feature;gene=y1062;inference=protein motif:ProSite:PS01007
AL590842.1	EMBL	INVERTED	2442346	2442374	.	-	.	ID=id4998;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	2443255	2443719	.	-	.	ID=gene2149;Name=YPO2172;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2172
AL590842.1	EMBL	CDS	2443255	2443719	.	-	0	ID=cds2112;Parent=gene2149;Dbxref=InterPro:IPR004027,InterPro:IPR023006,NCBI_GP:CAL20803.1;Name=CAL20803.1;Note=Similar to Escherichia coli hypothetical protein YchJ SW:YCHJ_ECOLI (P37052) (152 aa) fasta scores: E(): 0%2C53.2%25 id in 154 aa%2C and to Shigella flexneri hypothetical protein YchJ SW:YCHJ_SHIFL (P38481) (152 aa) fasta scores: E(): 3e-32%2C 51.3%25 id in 154 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL20803.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2443725	2443728	.	-	.	ID=id4999;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2445053	2446069	.	+	.	ID=gene2150;Name=YPO2173;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2173
AL590842.1	EMBL	CDS	2445053	2446069	.	+	0	ID=cds2113;Parent=gene2150;Dbxref=GOA:Q7CII2,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR028616,UniProtKB/TrEMBL:Q7CII2,NCBI_GP:CAL20804.1;Name=CAL20804.1;Note=Similar to Erwinia carotovora subsp. carotovora virulence and RpoS regulatory protein%2C ExpM TR:O86197 (EMBL:AJ224437) (338 aa) fasta scores: E(): 0%2C 64.2%25 id in 338%2C and to Salmonella typhimurium virulence regulator MviA TR:Q56065 (EMBL:U53173) (337 aa) fasta scores: E(): 0%2C62.6%25 id in 337 aa;gbkey=CDS;inference=similar to sequence:INSDC:U53173;product=probable response regulator;protein_id=CAL20804.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2445074	2445412	.	+	.	ID=id5000;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 117.40%2C E-value 2.7e-31;gbkey=misc_feature;inference=protein motif:PF00072
AL590842.1	EMBL	ribosome_entry_site	2446363	2446366	.	+	.	ID=id5001;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2446376	2447722	.	+	.	ID=gene2151;Name=YPO2174;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2174
AL590842.1	EMBL	CDS	2446376	2447722	.	+	0	ID=cds2114;Parent=gene2151;Dbxref=GOA:Q0WEZ0,InterPro:IPR001732,InterPro:IPR008927,InterPro:IPR014026,InterPro:IPR014027,InterPro:IPR016040,InterPro:IPR017476,InterPro:IPR028357,UniProtKB/TrEMBL:Q0WEZ0,NCBI_GP:CAL20805.1;Name=CAL20805.1;Note=Similar to Xanthomonas campestris UDP-glucose dehydrogenase TR:Q56812 (EMBL:X79772) (445 aa) fasta scores: E(): 0%2C 61.3%25 id in 349 aa%2C and to Pseudomonas aeruginosa probable nucleotide sugar dehydrogenase PA3559 TR:AAG06947 (EMBL:AE004776) (464 aa) fasta scores: E(): 0%2C64.9%25 id in 447 aa;gbkey=CDS;inference=similar to sequence:INSDC:X79772;product=putative nucleotide sugar dehydrogenase;protein_id=CAL20805.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2446376	2447653	.	+	.	ID=id5002;Note=Pfam match to entry PF00984 UDPG_MGDP_dh%2CUDP-glucose/GDP-mannose dehydrogenase family%2C score 622.60%2CE-value 2.2e-183;gbkey=misc_feature;inference=protein motif:PF00984
AL590842.1	EMBL	gene	2448157	2448555	.	-	.	ID=gene2152;Name=bglY;gbkey=Gene;gene=bglY;gene_biotype=protein_coding;gene_synonym=cur,drdX,hns,hnsA,msyA,osmZ,pilG,topS;locus_tag=YPO2175
AL590842.1	EMBL	CDS	2448157	2448555	.	-	0	ID=cds2115;Parent=gene2152;Dbxref=GOA:Q0WEY9,InterPro:IPR001801,InterPro:IPR027444,InterPro:IPR027454,UniProtKB/TrEMBL:Q0WEY9,NCBI_GP:CAL20806.1;Name=CAL20806.1;Note=Similar to Escherichia coli histone-like DNA-binding protein Hns SW:HNS_ECOLI (P08936) (136 aa) fasta scores: E(): 0%2C 84.3%25 id in 134 aa%2C and to Similar to Serratia marcescens DNA-binding protein Hns SW:HNS_SERMA (P18955) (134 aa) fasta scores: E(): 0%2C 92.5%25 id in 134 aa;gbkey=CDS;gene=bglY;product=DNA-binding protein Hns;protein_id=CAL20806.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2448175	2448555	.	-	.	ID=id5003;Note=Pfam match to entry PF00816 Histone_HNS%2C H-NS histone family%2C score 290.70%2C E-value 1.8e-83;gbkey=misc_feature;gene=bglY;inference=protein motif:PF00816
AL590842.1	EMBL	sequence_feature	2448178	2448201	.	-	.	ID=id5004;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=bglY;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	ribosome_entry_site	2449291	2449294	.	+	.	ID=id5005;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2449305	2449895	.	+	.	ID=gene2153;Name=tdk;gbkey=Gene;gene=tdk;gene_biotype=protein_coding;locus_tag=YPO2176
AL590842.1	EMBL	CDS	2449305	2449895	.	+	0	ID=cds2116;Parent=gene2153;Dbxref=GOA:Q8ZEJ1,InterPro:IPR001267,InterPro:IPR020633,InterPro:IPR020634,InterPro:IPR027417,NCBI_GP:CAL20807.1;Name=CAL20807.1;Note=Similar to Escherichia coli thymidine kinase Tdk SW:KITH_ECOLI (P23331) (205 aa) fasta scores: E(): 0%2C 76.4%25 id in 191 aa%2C and to Vibrio cholerae thymidine kinase VC1167 TR:Q9KST9 (EMBL:AE004197) (192 aa) fasta scores: E(): 0%2C 72.6%25 id in 190 aa;gbkey=CDS;gene=tdk;inference=similar to sequence:INSDC:AE004197;product=thymidine kinase;protein_id=CAL20807.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2449308	2449862	.	+	.	ID=id5006;Note=Pfam match to entry PF00265 TK%2C Thymidine kinases%2Cscore 279.50%2C E-value 2.9e-97;gbkey=misc_feature;gene=tdk;inference=protein motif:PF00265
AL590842.1	EMBL	sequence_feature	2449821	2449862	.	+	.	ID=id5007;Note=PS00603 Thymidine kinase cellular-type signature.;gbkey=misc_feature;gene=tdk;inference=protein motif:ProSite:PS00603
AL590842.1	EMBL	repeat_region	2450198	2452151	.	-	.	ID=id5008;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	2450198	2450225	.	+	.	ID=id5009;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	2450264	2451046	.	-	.	ID=gene2154;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO2177
AL590842.1	EMBL	CDS	2450264	2451046	.	-	0	ID=cds2117;Parent=gene2154;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL20808.1;Name=CAL20808.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL20808.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2450339	2450878	.	-	.	ID=id5010;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	2450696	2450719	.	-	.	ID=id5011;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2451043	2452065	.	-	.	ID=gene2155;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO2178
AL590842.1	EMBL	CDS	2451043	2452065	.	-	0	ID=cds2118;Parent=gene2155;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL20809.1;Name=CAL20809.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL20809.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2451187	2451720	.	-	.	ID=id5012;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	sequence_feature	2451949	2452014	.	-	.	ID=id5013;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	2451958	2452041	.	-	.	ID=id5014;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	INVERTED	2452124	2452151	.	-	.	ID=id5015;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	2452605	2455280	.	-	.	ID=gene2156;Name=adhE;gbkey=Gene;gene=adhE;gene_biotype=protein_coding;gene_synonym=ana;locus_tag=YPO2180
AL590842.1	EMBL	CDS	2452605	2455280	.	-	0	ID=cds2119;Parent=gene2156;Dbxref=GOA:Q74TY8,InterPro:IPR001670,InterPro:IPR012079,InterPro:IPR015590,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,InterPro:IPR018211,UniProtKB/TrEMBL:Q74TY8,NCBI_GP:CAL20810.1;Name=CAL20810.1;Note=Similar to Escherichia coli aldehyde-alcohol dehydrogenase AdhE SW:ADHE_ECOLI (P17547) (890 aa) fasta scores: E(): 0%2C 90.7%25 id in 891 aa%2C and to Vibrio cholerae alcohol dehydrogenase/acetaldehyde dehydrogenase VC2033 TR:Q9KQG5 (EMBL:AE004277) (894 aa) fasta scores: E(): 0%2C77.0%25 id in 896 aa;gbkey=CDS;gene=adhE;inference=similar to sequence:INSDC:AE004277;product=aldehyde-alcohol dehydrogenase;protein_id=CAL20810.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2452719	2453912	.	-	.	ID=id5016;Note=Pfam match to entry PF00465 Fe-ADH%2C Iron-containing alcohol dehydrogenases%2C score 759.30%2C E-value 1.6e-224;gbkey=misc_feature;gene=adhE;inference=protein motif:PF00465
AL590842.1	EMBL	sequence_feature	2452899	2452964	.	-	.	ID=id5017;Note=Predicted helix-turn-helix motif with score 1036 (+2.72 SD) at aa 773-794%2C sequence RRYAEIADHLGLSAPGDRTAQK;gbkey=misc_feature;gene=adhE
AL590842.1	EMBL	sequence_feature	2453061	2453123	.	-	.	ID=id5018;Note=PS00060 Iron-containing alcohol dehydrogenases signature 2.;gbkey=misc_feature;gene=adhE;inference=protein motif:ProSite:PS00060
AL590842.1	EMBL	sequence_feature	2453301	2453387	.	-	.	ID=id5019;Note=PS00913 Iron-containing alcohol dehydrogenases signature 1.;gbkey=misc_feature;gene=adhE;inference=protein motif:ProSite:PS00913
AL590842.1	EMBL	sequence_feature	2453937	2455277	.	-	.	ID=id5020;Note=Pfam match to entry PF00171 aldedh%2C Aldehyde dehydrogenase family%2C score -190.90%2C E-value 6.8e-06;gbkey=misc_feature;gene=adhE;inference=protein motif:PF00171
AL590842.1	EMBL	ribosome_entry_site	2455287	2455292	.	-	.	ID=id5021;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	ribosome_entry_site	2456077	2456080	.	+	.	ID=id5022;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2456087	2456731	.	+	.	ID=gene2157;Name=YPO2181;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2181
AL590842.1	EMBL	CDS	2456087	2456731	.	+	0	ID=cds2120;Parent=gene2157;Dbxref=GOA:Q7CIN5,InterPro:IPR002771,UniProtKB/TrEMBL:Q7CIN5,NCBI_GP:CAL20811.1;Name=CAL20811.1;Note=Similar to Escherichia coli hypothetical protein YchE SW:YCHE_ECOLI (P25743) (215 aa) fasta scores: E(): 0%2C84.9%25 id in 212 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) hypothetical protein BU267 TR:BAB12977 (EMBL:AP001118) (215 aa) fasta scores: E(): 0%2C 64.0%25 id in 211 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001118;product=putative membrane protein;protein_id=CAL20811.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2456108	2456716	.	+	.	ID=id5023;Note=Pfam match to entry PF01914 UPF0056%2C Uncharacterised protein family UPF0056%2C score 344.50%2C E-value 1.2e-99;gbkey=misc_feature;inference=protein motif:PF01914
AL590842.1	EMBL	sequence_feature	2456114	2456182	.	+	.	ID=id5024;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2456240	2456308	.	+	.	ID=id5025;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2456318	2456377	.	+	.	ID=id5026;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2456438	2456506	.	+	.	ID=id5027;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2456534	2456590	.	+	.	ID=id5028;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2456651	2456719	.	+	.	ID=id5029;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	ribosome_entry_site	2457554	2457557	.	+	.	ID=id5030;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2457569	2459206	.	+	.	ID=gene2158;Name=oppA;gbkey=Gene;gene=oppA;gene_biotype=protein_coding;locus_tag=YPO2182
AL590842.1	EMBL	CDS	2457569	2459206	.	+	0	ID=cds2121;Parent=gene2158;Dbxref=GOA:Q7CIN4,InterPro:IPR000914,InterPro:IPR023765,UniProtKB/TrEMBL:Q7CIN4,NCBI_GP:CAL20812.1;Name=CAL20812.1;Note=Similar to Salmonella typhimurium periplasmic oligopeptide-binding protein precursor OppA SW:OPPA_SALTY (P06202) (542 aa) fasta scores: E(): 0%2C 78.5%25 id in 545 aa%2Cand to Escherichia coli periplasmic oligopeptide-binding protein precursor OppA SW:OPPA_ECOLI (P23843) (543 aa) fasta scores: E(): 0%2C 76.7%25 id in 545 aa;gbkey=CDS;gene=oppA;product=periplasmic oligopeptide-binding protein precursor;protein_id=CAL20812.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2457605	2459194	.	+	.	ID=id5031;Note=Pfam match to entry PF00496 SBP_bac_5%2C Bacterial extracellular solute-binding proteins%2C family 5%2C score 773.20%2C E-value 1e-228;gbkey=misc_feature;gene=oppA;inference=protein motif:PF00496
AL590842.1	EMBL	sequence_feature	2457830	2457898	.	+	.	ID=id5032;Note=PS01040 Bacterial extracellular solute-binding proteins%2C family 5 signature.;gbkey=misc_feature;gene=oppA;inference=protein motif:ProSite:PS01040
AL590842.1	EMBL	gene	2459293	2460213	.	+	.	ID=gene2159;Name=oppB;gbkey=Gene;gene=oppB;gene_biotype=protein_coding;locus_tag=YPO2183
AL590842.1	EMBL	CDS	2459293	2460213	.	+	0	ID=cds2122;Parent=gene2159;Dbxref=GOA:Q7CIN3,InterPro:IPR000515,UniProtKB/TrEMBL:Q7CIN3,NCBI_GP:CAL20813.1;Name=CAL20813.1;Note=Similar to Escherichia coli oligopeptide transport system permease protein OppB SW:OPPB_ECOLI (P31132) (306 aa) fasta scores: E(): 0%2C 92.5%25 id in 306 aa%2C and to Salmonella typhimurium oligopeptide transport system permease protein OppB SW:OPPB_SALTY (P08005) (306 aa) fasta scores: E(): 0%2C 91.5%25 id in 306 aa;gbkey=CDS;gene=oppB;inference=protein motif:TMHMM:2.0;product=oligopeptide transport system permease protein;protein_id=CAL20813.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2459329	2459382	.	+	.	ID=id5033;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=oppB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2459593	2459661	.	+	.	ID=id5034;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=oppB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2459698	2459766	.	+	.	ID=id5035;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=oppB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2459809	2459862	.	+	.	ID=id5036;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=oppB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2459881	2460096	.	+	.	ID=id5037;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 29.40%2C E-value 8.5e-05;gbkey=misc_feature;gene=oppB;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	2459884	2459970	.	+	.	ID=id5038;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;gene=oppB;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	2459974	2460042	.	+	.	ID=id5039;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=oppB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2460124	2460192	.	+	.	ID=id5040;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=oppB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	ribosome_entry_site	2460218	2460221	.	+	.	ID=id5041;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2460232	2461137	.	+	.	ID=gene2160;Name=oppC;gbkey=Gene;gene=oppC;gene_biotype=protein_coding;locus_tag=YPO2184
AL590842.1	EMBL	CDS	2460232	2461137	.	+	0	ID=cds2123;Parent=gene2160;Dbxref=GOA:Q7CIN2,InterPro:IPR000515,InterPro:IPR025966,UniProtKB/TrEMBL:Q7CIN2,NCBI_GP:CAL20814.1;Name=CAL20814.1;Note=Similar to Escherichia coli oligopeptide transport system permease protein OppC SW:OPPC_ECOLI (P77664) (302 aa) fasta scores: E(): 0%2C 92.4%25 id in 301 aa%2C and to Salmonella typhimurium oligopeptide transport system permease protein OppC SW:OPPC_SALTY (P08006) (302 aa) fasta scores: E(): 0%2C 91.7%25 id in 301 aa;gbkey=CDS;gene=oppC;inference=protein motif:TMHMM:2.0;product=oligopeptide transport system permease protein;protein_id=CAL20814.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2460346	2460414	.	+	.	ID=id5042;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=oppC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2460535	2460603	.	+	.	ID=id5043;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=oppC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2460640	2460708	.	+	.	ID=id5044;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=oppC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2460718	2460777	.	+	.	ID=id5045;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=oppC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2460787	2461017	.	+	.	ID=id5046;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 30.00%2C E-value 5.6e-05;gbkey=misc_feature;gene=oppC;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	2460790	2460876	.	+	.	ID=id5047;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;gene=oppC;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	2460868	2460936	.	+	.	ID=id5048;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=oppC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2461030	2461098	.	+	.	ID=id5049;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=oppC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	ribosome_entry_site	2461137	2461141	.	+	.	ID=id5050;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2461149	2462150	.	+	.	ID=gene2161;Name=oppD;gbkey=Gene;gene=oppD;gene_biotype=protein_coding;locus_tag=YPO2185
AL590842.1	EMBL	CDS	2461149	2462150	.	+	0	ID=cds2124;Parent=gene2161;Dbxref=GOA:Q7CIN1,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR010066,InterPro:IPR013563,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CIN1,NCBI_GP:CAL20815.1;Name=CAL20815.1;Note=Similar to Escherichia coli oligopeptide transport ATP-binding protein OppD SW:OPPD_ECOLI (P76027) (337 aa) fasta scores: E(): 0%2C 87.3%25 id in 323 aa%2C and to Salmonella typhimurium oligopeptide transport ATP-binding protein OppD SW:OPPD_SALTY (P04285) (335 aa) fasta scores: E(): 0%2C 87.0%25 id in 322 aa;gbkey=CDS;gene=oppD;product=oligopeptide transport ATP-binding protein;protein_id=CAL20815.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2461281	2461871	.	+	.	ID=id5051;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 219.10%2C E-value 6.4e-62;gbkey=misc_feature;gene=oppD;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2461302	2461325	.	+	.	ID=id5052;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=oppD;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	2461641	2461685	.	+	.	ID=id5053;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=oppD;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	2462147	2463148	.	+	.	ID=gene2162;Name=oppF;gbkey=Gene;gene=oppF;gene_biotype=protein_coding;locus_tag=YPO2186
AL590842.1	EMBL	CDS	2462147	2463148	.	+	0	ID=cds2125;Parent=gene2162;Dbxref=GOA:Q7CIN0,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR010066,InterPro:IPR013563,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CIN0,NCBI_GP:CAL20816.1;Name=CAL20816.1;Note=Similar to Escherichia coli oligopeptide transport ATP-binding protein OppF SW:OPPF_ECOLI (P77737) (334 aa) fasta scores: E(): 0%2C 90.4%25 id in 334 aa%2C and to Salmonella typhimurium oligopeptide transport ATP-binding protein OppF SW:OPPF_SALTY (P08007) (334 aa) fasta scores: E(): 0%2C 89.8%25 id in 334 aa;gbkey=CDS;gene=oppF;product=oligopeptide transport ATP-binding protein;protein_id=CAL20816.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2462291	2462866	.	+	.	ID=id5054;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 223.70%2C E-value 2.7e-63;gbkey=misc_feature;gene=oppF;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2462312	2462335	.	+	.	ID=id5055;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=oppF;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	2462636	2462680	.	+	.	ID=id5056;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=oppF;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	2464223	2464546	.	-	.	ID=gene2163;Name=YPO2187;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2187
AL590842.1	EMBL	CDS	2464223	2464546	.	-	0	ID=cds2126;Parent=gene2163;Dbxref=InterPro:IPR007376,NCBI_GP:CAL20817.1;Name=CAL20817.1;Note=Similar to Escherichia coli hypothetical protein YciU SW:YCIU_ECOLI (P76028) (109 aa) fasta scores: E(): 0%2C90.7%25 id in 107 aa%2C and to Vibrio cholerae hypothetical protein VC1208 vc1208 TR:Q9KSP8 (EMBL:AE004200) (106 aa) fasta scores: E(): 1.3e-21%2C 50.5%25 id in 97 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004200;product=conserved hypothetical protein;protein_id=CAL20817.1;transl_table=11
AL590842.1	EMBL	gene	2464711	2466171	.	-	.	ID=gene2164;Name=cls;gbkey=Gene;gene=cls;gene_biotype=protein_coding;gene_synonym=nov;locus_tag=YPO2188
AL590842.1	EMBL	CDS	2464711	2466171	.	-	0	ID=cds2127;Parent=gene2164;Dbxref=GOA:Q8ZEI2,InterPro:IPR001736,InterPro:IPR022924,InterPro:IPR025202,InterPro:IPR027379,NCBI_GP:CAL20818.1;Name=CAL20818.1;Note=Similar to Escherichia coli cardiolipin synthetase Cls SW:CLS_ECOLI (P31071) (486 aa) fasta scores: E(): 0%2C83.5%25 id in 486 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) cardiolipin synthetase Cls SW:CLS_BUCAI (P57361) (486 aa) fasta scores: E(): 0%2C 61.1%25 id in 486 aa;gbkey=CDS;gene=cls;inference=protein motif:TMHMM:2.0;product=cardiolipin synthetase;protein_id=CAL20818.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2464894	2464977	.	-	.	ID=id5057;Note=Pfam match to entry PF00614 PLDc%2C Phospholipase D. Active site motif%2C score 33.40%2C E-value 5.3e-06;gbkey=misc_feature;gene=cls;inference=protein motif:PF00614
AL590842.1	EMBL	sequence_feature	2465434	2465517	.	-	.	ID=id5058;Note=Pfam match to entry PF00614 PLDc%2C Phospholipase D. Active site motif%2C score 36.10%2C E-value 8.3e-07;gbkey=misc_feature;gene=cls;inference=protein motif:PF00614
AL590842.1	EMBL	sequence_feature	2465995	2466060	.	-	.	ID=id5059;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=cls;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2466097	2466162	.	-	.	ID=id5060;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=cls;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2466240	2466488	.	-	.	ID=gene2165;Name=YPO2189;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2189
AL590842.1	EMBL	CDS	2466240	2466488	.	-	0	ID=cds2128;Parent=gene2165;Dbxref=UniProtKB/TrEMBL:Q74TX9,NCBI_GP:CAL20819.1;Name=CAL20819.1;Note=No significant database matches. Similar to CDS YPO2920 (8s aa) E(): 2.5e-23%2C 95.1%25 identity in 61 aa overlap;gbkey=CDS;product=hypothetical protein;protein_id=CAL20819.1;transl_table=11
AL590842.1	EMBL	gene	2467211	2467750	.	+	.	ID=gene2166;Name=ail;gbkey=Gene;gene=ail;gene_biotype=protein_coding;locus_tag=YPO2190
AL590842.1	EMBL	CDS	2467211	2467750	.	+	0	ID=cds2129;Parent=gene2166;Dbxref=GOA:Q7CIM9,InterPro:IPR000758,InterPro:IPR011250,InterPro:IPR027385,UniProtKB/TrEMBL:Q7CIM9,NCBI_GP:CAL20820.1;Name=CAL20820.1;Note=Similar to Yersinia enterocolitica attachment invasion locus protein precursor Ail SW:AIL_YEREN (P16454) (178 aa) fasta scores: E(): 2.6e-29%2C 46.1%25 id in 178 aa%2Cand to Yersinia pseudotuberculosis attachment invasion locus protein precursor Ail SW:AIL_YERPS (Q56957) (182 aa) fasta scores: E(): 2.9e-28%2C 45.1%25 id in 173 aa;gbkey=CDS;gene=ail;product=attachment invasion locus protein precursor;protein_id=CAL20820.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2467721	2467747	.	+	.	ID=id5061;Note=PS00695 Enterobacterial virulence outer membrane protein signature 2.;gbkey=misc_feature;gene=ail;inference=protein motif:ProSite:PS00695
AL590842.1	EMBL	gene	2467971	2468234	.	+	.	ID=gene2167;Name=YPO2191;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2191
AL590842.1	EMBL	CDS	2467971	2468234	.	+	0	ID=cds2130;Parent=gene2167;Dbxref=UniProtKB/TrEMBL:Q74TX7,NCBI_GP:CAL20821.1;Name=CAL20821.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20821.1;transl_table=11
AL590842.1	EMBL	gene	2468818	2469114	.	-	.	ID=gene2168;Name=YPO2192;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2192
AL590842.1	EMBL	CDS	2468818	2469114	.	-	0	ID=cds2131;Parent=gene2168;Dbxref=InterPro:IPR005545,InterPro:IPR011008,UniProtKB/TrEMBL:Q7CIM8,NCBI_GP:CAL20822.1;Name=CAL20822.1;Note=Similar to Vibrio cholerae hypothetical protein VC1702 TR:Q9KRE0 (EMBL:AE004248) (98 aa) fasta scores: E(): 8.4e-28%2C 76.5%25 id in 98 aa%2C and to Escherichia coli protein YciI SW:YCII_ECOLI (P31070) (98 aa) fasta scores: E(): 1.6e-26%2C 72.4%25 id in 98 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004248;product=conserved hypothetical protein;protein_id=CAL20822.1;transl_table=11
AL590842.1	EMBL	gene	2469415	2470173	.	+	.	ID=gene2169;Name=tonB;gbkey=Gene;gene=tonB;gene_biotype=protein_coding;locus_tag=YPO2193
AL590842.1	EMBL	CDS	2469415	2470173	.	+	0	ID=cds2132;Parent=gene2169;Dbxref=GOA:Q7CIM7,InterPro:IPR003538,InterPro:IPR006260,UniProtKB/TrEMBL:Q7CIM7,NCBI_GP:CAL20823.1;Name=CAL20823.1;Note=Similar to Yersinia enterocolitica TonB protein SW:TONB_YEREN (Q05740) (255 aa) fasta scores: E(): 0%2C 78.6%25 id in 257 aa%2C and to Serratia marcescens TonB protein SW:TONB_SERMA (P26185) (247 aa) fasta scores: E(): 1.4e-30%2C51.8%25 id in 253 aa;gbkey=CDS;gene=tonB;product=TonB protein;protein_id=CAL20823.1;transl_table=11
AL590842.1	EMBL	repeat_region	2470174	2471488	.	-	.	ID=id5062;Note=insertion sequence:IS285;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	2470174	2470202	.	+	.	ID=id5063;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	2470209	2471417	.	-	.	ID=gene2170;Name=y1062;gbkey=Gene;gene=y1062;gene_biotype=protein_coding;gene_synonym=ypmt1.80C;locus_tag=YPO2194
AL590842.1	EMBL	CDS	2470209	2471417	.	-	0	ID=cds2133;Parent=gene2170;Dbxref=GOA:O68779,InterPro:IPR001207,UniProtKB/TrEMBL:O68779,NCBI_GP:CAL20824.1;Name=CAL20824.1;Note=Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa.;gbkey=CDS;gene=y1062;inference=similar to sequence:INSDC:AF053947;product=transposase for the IS285 insertion element;protein_id=CAL20824.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2470281	2471417	.	-	.	ID=id5064;Note=Pfam match to entry PF00872 Transpo_mutator%2CTransposase%2C Mutator family%2C score 430.40%2C E-value 1.6e-125;gbkey=misc_feature;gene=y1062;inference=protein motif:PF00872
AL590842.1	EMBL	sequence_feature	2470650	2470724	.	-	.	ID=id5065;Note=PS01007 Transposases%2C Mutator family%2C signature.;gbkey=misc_feature;gene=y1062;inference=protein motif:ProSite:PS01007
AL590842.1	EMBL	INVERTED	2471460	2471488	.	-	.	ID=id5066;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	2471565	2472014	.	-	.	ID=gene2171;Name=YPO2195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2195
AL590842.1	EMBL	CDS	2471565	2472014	.	-	0	ID=cds2134;Parent=gene2171;Dbxref=GOA:Q7CIM6,InterPro:IPR006683,InterPro:IPR029069,UniProtKB/TrEMBL:Q7CIM6,NCBI_GP:CAL20825.1;Name=CAL20825.1;Note=Similar to Escherichia coli putative acyl-CoA thioester hydrolase YciA precursor SW:YCIA_ECOLI (P04379) (132 aa) fasta scores: E(): 0%2C 82.4%25 id in 125 aa%2C and to Haemophilus influenzae putative acyl-CoA thioester hydrolase HI0827 SW:YCIA_HAEIN (P44886) (154 aa) fasta scores: E(): 0%2C 71.9%25 id in 121 aa;gbkey=CDS;product=putative acyl-CoA thioester hydrolase;protein_id=CAL20825.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2471583	2471996	.	-	.	ID=id5067;Note=Pfam match to entry PF01662 Acyl-CoA_hydro%2CCytosolic long-chain acyl-CoA thioester hydrolase%2C score 202.30%2C E-value 7.4e-57;gbkey=misc_feature;inference=protein motif:PF01662
AL590842.1	EMBL	gene	2472094	2472636	.	-	.	ID=gene2172;Name=ispA;gbkey=Gene;gene=ispA;gene_biotype=protein_coding;gene_synonym=ispZ;locus_tag=YPO2196
AL590842.1	EMBL	CDS	2472094	2472636	.	-	0	ID=cds2135;Parent=gene2172;Dbxref=GOA:Q8ZEH5,InterPro:IPR006008,NCBI_GP:CAL20826.1;Name=CAL20826.1;Note=Similar to Escherichia coli probable intracellular septation protein IspZ SW:ISPZ_ECOLI (P21366) (179 aa) fasta scores: E(): 0%2C 75.8%25 id in 178 aa%2C and to Shigella flexneri intracellular septation protein IspZ SW:ISPZ_SHIFL (P95745) (179 aa) fasta scores: E(): 0%2C 75.3%25 id in 178 aa;gbkey=CDS;gene=ispA;inference=protein motif:TMHMM:2.0;product=putative intracellular septation protein;protein_id=CAL20826.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2472127	2472183	.	-	.	ID=id5068;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=ispA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2472214	2472279	.	-	.	ID=id5069;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=ispA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2472352	2472402	.	-	.	ID=id5070;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=ispA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2472433	2472483	.	-	.	ID=id5071;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=ispA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2472511	2472576	.	-	.	ID=id5072;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=ispA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	pseudogene	2472867	2474601	.	+	.	ID=gene2173;Name=YPO2197;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO2197;pseudo=true
AL590842.1	EMBL	CDS	2472867	2474601	.	+	0	ID=cds2136;Parent=gene2173;Note=Similar to Vibrio cholerae probable sulfate permease family protein VCA0103 TR:Q9KN62 (EMBL:AE004353) (592 aa) fasta scores: E(): 5.2e-119%2C 55.575%25 id in 574 aa%2C and to Pseudomonas aeruginosa probable sulfate transporter PA1647 TR:Q9I378 (EMBL:AE004592) (573 aa) fasta scores: E(): 2e-76%2C 42.337%25 id in 522 aa. There is a frameshift following codon 360. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=similar to sequence:INSDC:AE004592;product=putative sulfate transporter (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	2472948	2473001	.	+	.	ID=id5073;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2473011	2473079	.	+	.	ID=id5074;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2473092	2473160	.	+	.	ID=id5075;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2473170	2473226	.	+	.	ID=id5076;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2473227	2473946	.	+	.	ID=id5077;Note=Pfam match to entry PF00916 Sulfate_transp%2C Sulfate transporter family%2C score 80.50%2C E-value 3.4e-20;gbkey=misc_feature;inference=protein motif:PF00916
AL590842.1	EMBL	sequence_feature	2473260	2473319	.	+	.	ID=id5078;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2473410	2473463	.	+	.	ID=id5079;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2473482	2473541	.	+	.	ID=id5080;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2473632	2473700	.	+	.	ID=id5081;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2473845	2473913	.	+	.	ID=id5082;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2474173	2474517	.	+	.	ID=id5083;Note=Pfam match to entry PF01740 STAS%2C STAS domain%2C score 42.50%2C E-value 9.5e-09;gbkey=misc_feature;inference=protein motif:PF01740
AL590842.1	EMBL	gene	2474722	2475492	.	-	.	ID=gene2174;Name=YPO2199;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2199
AL590842.1	EMBL	CDS	2474722	2475492	.	-	0	ID=cds2137;Parent=gene2174;Dbxref=GOA:Q8ZEH4,InterPro:IPR009627,NCBI_GP:CAL20828.1;Name=CAL20828.1;Note=Similar to Escherichia coli hypothetical protein YciC SW:YCIC_ECOLI (P21365) (247 aa) fasta scores: E(): 0%2C47.2%25 id in 250 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) hypothetical protein BU276 TR:BAB12986 (EMBL:AP001118) (247 aa) fasta scores: E(): 9.3e-22%2C 28.0%25 id in 250 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001118;product=putative membrane protein;protein_id=CAL20828.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2474761	2474826	.	-	.	ID=id5084;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2474857	2474922	.	-	.	ID=id5085;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2474986	2475051	.	-	.	ID=id5086;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2475064	2475129	.	-	.	ID=id5087;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2475169	2475234	.	-	.	ID=id5088;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2475367	2475432	.	-	.	ID=id5089;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	ribosome_entry_site	2475498	2475503	.	-	.	ID=id5090;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2475654	2475869	.	+	.	ID=gene2175;Name=YPO2200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2200
AL590842.1	EMBL	CDS	2475654	2475869	.	+	0	ID=cds2138;Parent=gene2175;Dbxref=UniProtKB/TrEMBL:Q7CIM5,NCBI_GP:CAL20829.1;Name=CAL20829.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20829.1;transl_table=11
AL590842.1	EMBL	gene	2475978	2476613	.	+	.	ID=gene2176;Name=ompW;gbkey=Gene;gene=ompW;gene_biotype=protein_coding;locus_tag=YPO2201
AL590842.1	EMBL	CDS	2475978	2476613	.	+	0	ID=cds2139;Parent=gene2176;Dbxref=GOA:Q0WEW6,InterPro:IPR000758,InterPro:IPR005618,InterPro:IPR011250,InterPro:IPR017690,UniProtKB/TrEMBL:Q0WEW6,NCBI_GP:CAL20830.1;Name=CAL20830.1;Note=Similar to Escherichia coli outer membrane protein W precursor OmpW SW:OMPW_ECOLI (P21364) (212 aa) fasta scores: E(): 0%2C 58.5%25 id in 212 aa%2C and to Salmonella typhimurium outer membrane protein YciD TR:Q9KWV2 (EMBL:Y19180) (185 aa) fasta scores: E(): 0%2C 58.5%25 id in 183 aa;gbkey=CDS;gene=ompW;inference=similar to sequence:INSDC:Y19180;product=putative exported protein;protein_id=CAL20830.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2476584	2476610	.	+	.	ID=id5091;Note=PS00695 Enterobacterial virulence outer membrane protein signature 2.;gbkey=misc_feature;gene=ompW;inference=protein motif:ProSite:PS00695
AL590842.1	EMBL	gene	2476760	2477074	.	-	.	ID=gene2177;Name=YPO2202;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2202
AL590842.1	EMBL	CDS	2476760	2477074	.	-	0	ID=cds2140;Parent=gene2177;Dbxref=InterPro:IPR007055,InterPro:IPR014004,UniProtKB/TrEMBL:Q7CIM4,NCBI_GP:CAL20831.1;Name=CAL20831.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA4739 TR:AAG08125 (EMBL:AE004887) (114 aa) fasta scores: E(): 1e-05%2C 35.5%25 id in 110 aa. C-terminus is similar to an internal region of Escherichia coli osmotically inducible protein Y OsmY SW:OSMY_ECOLI (P27291) (201 aa) fasta scores: E(): 2.6e-08%2C 47.2%25 id in 72 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004887;product=putative lipoprotein;protein_id=CAL20831.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2477006	2477038	.	-	.	ID=id5092;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	ribosome_entry_site	2477083	2477086	.	-	.	ID=id5093;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2477417	2478223	.	-	.	ID=gene2178;Name=trpA;gbkey=Gene;gene=trpA;gene_biotype=protein_coding;locus_tag=YPO2203
AL590842.1	EMBL	CDS	2477417	2478223	.	-	0	ID=cds2141;Parent=gene2178;Dbxref=GOA:Q8ZEH0,InterPro:IPR002028,InterPro:IPR011060,InterPro:IPR013785,InterPro:IPR018204,NCBI_GP:CAL20832.1;Name=CAL20832.1;Note=Similar to Salmonella typhimurium tryptophan synthase alpha chain TrpA SW:TRPA_SALTY (P00929) (268 aa) fasta scores: E(): 0%2C 78.0%25 id in 268 aa%2C and to Escherichia coli tryptophan synthase alpha chain TrpA SW:TRPA_ECOLI (P00928) (268 aa) fasta scores: E(): 0%2C 79.1%25 id in 268 aa;gbkey=CDS;gene=trpA;product=tryptophan synthase alpha chain;protein_id=CAL20832.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2477510	2478172	.	-	.	ID=id5094;Note=Pfam match to entry PF00290 trp_syntA%2C Tryptophan synthase alpha chain%2C score 435.70%2C E-value 4.2e-127;gbkey=misc_feature;gene=trpA;inference=protein motif:PF00290
AL590842.1	EMBL	sequence_feature	2478041	2478082	.	-	.	ID=id5095;Note=PS00167 Tryptophan synthase alpha chain signature.;gbkey=misc_feature;gene=trpA;inference=protein motif:ProSite:PS00167
AL590842.1	EMBL	gene	2478223	2479413	.	-	.	ID=gene2179;Name=trpB;gbkey=Gene;gene=trpB;gene_biotype=protein_coding;locus_tag=YPO2204
AL590842.1	EMBL	CDS	2478223	2479413	.	-	0	ID=cds2142;Parent=gene2179;Dbxref=GOA:Q8ZEG9,InterPro:IPR001926,InterPro:IPR006653,InterPro:IPR006654,InterPro:IPR023026,NCBI_GP:CAL20833.1;Name=CAL20833.1;Note=Similar to Escherichia coli tryptophan synthase beta chain TrpB SW:TRPB_ECOLI (P00932) (396 aa) fasta scores: E(): 0%2C 90.6%25 id in 395 aa%2C and to Salmonella typhimurium tryptophan synthase beta chain TrpB SW:TRPB_SALTY (P00933) (396 aa) fasta scores: E(): 0%2C 89.9%25 id in 395 aa;gbkey=CDS;gene=trpB;product=tryptophan synthase beta chain;protein_id=CAL20833.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2478280	2479269	.	-	.	ID=id5096;Note=Pfam match to entry PF00291 PALP%2CPyridoxal-phosphate dependent enzyme%2C score 394.70%2C E-value 9.1e-115;gbkey=misc_feature;gene=trpB;inference=protein motif:PF00291
AL590842.1	EMBL	sequence_feature	2479150	2479179	.	-	.	ID=id5097;Note=PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site.;gbkey=misc_feature;gene=trpB;inference=protein motif:ProSite:PS00168
AL590842.1	EMBL	ribosome_entry_site	2478231	2478234	.	-	.	ID=id5098;gbkey=regulatory;gene=trpB;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2479570	2480997	.	-	.	ID=gene2180;Name=trpC;gbkey=Gene;gene=trpC;gene_biotype=protein_coding;locus_tag=YPO2205
AL590842.1	EMBL	CDS	2479570	2480997	.	-	0	ID=cds2143;Parent=gene2180;Dbxref=GOA:Q8ZEG8,InterPro:IPR001240,InterPro:IPR001468,InterPro:IPR011060,InterPro:IPR013785,InterPro:IPR013798,NCBI_GP:CAL20834.1;Name=CAL20834.1;Note=Similar to Escherichia coli bifunctional tryptophan biosynthesis enzyme%2C N-(5'-phosphoribosyl)anthranilate isomerase:indole-3-glycerol-phosphate synthase%2C TrpC SW:TRPC_ECOLI (P00909) (452 aa) fasta scores: E(): 0%2C 72.3%25 id in 451 aa%2C and to Salmonella typhimurium tryptophan biosynthesis protein TrpC SW:TRPC_SALTY (P00910) (452 aa) fasta scores: E(): 0%2C 74.1%25 id in 451 aa. CDS contains additional amino acids at the N-terminus in comparison to the E. coli and S. typhimurium proteins;gbkey=CDS;gene=trpC;product=tryptophan biosynthesis protein TrpCF;protein_id=CAL20834.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2479585	2480160	.	-	.	ID=id5099;Note=Pfam match to entry PF00697 PRAI%2CN-(5'phosphoribosyl)anthranilate (PRA) isomerase%2C score 266.10%2C E-value 4.6e-76;gbkey=misc_feature;gene=trpC;inference=protein motif:PF00697
AL590842.1	EMBL	sequence_feature	2480173	2480919	.	-	.	ID=id5100;Note=Pfam match to entry PF00218 IGPS%2C Indole-3-glycerol phosphate synthases%2C score 471.30%2C E-value 7.9e-138;gbkey=misc_feature;gene=trpC;inference=protein motif:PF00218
AL590842.1	EMBL	sequence_feature	2480737	2480781	.	-	.	ID=id5101;Note=PS00614 Indole-3-glycerol phosphate synthase signature.;gbkey=misc_feature;gene=trpC;inference=protein motif:ProSite:PS00614
AL590842.1	EMBL	gene	2481001	2482002	.	-	.	ID=gene2181;Name=trpD;gbkey=Gene;gene=trpD;gene_biotype=protein_coding;locus_tag=YPO2206
AL590842.1	EMBL	CDS	2481001	2482002	.	-	0	ID=cds2144;Parent=gene2181;Dbxref=GOA:Q8ZEG7,InterPro:IPR000312,InterPro:IPR005940,InterPro:IPR017459,NCBI_GP:CAL20835.1;Name=CAL20835.1;Note=Similar to the C-terminal region of Escherichia coli anthranilate synthase component II TrpD SW:TRPG_ECOLI (P00904) (530 aa) fasta scores: E(): 0%2C 77.4%25 id in 332 aa. Full length CDS is similar to Vibrio parahaemolyticus anthranilate phosphoribosyltransferase TrpD SW:TRPD_VIBPA (P22096) (332 aa) fasta scores: E(): 0%2C 64.5%25 id in 330 aa;gbkey=CDS;gene=trpD;product=anthranilate phosphoribosyltransferase;protein_id=CAL20835.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2481544	2481993	.	-	.	ID=id5102;Note=Pfam match to entry PF00591 Glycos_transf_3%2Cglycosyl transferase family%2C score 281.20%2C E-value 1.3e-80;gbkey=misc_feature;gene=trpD;inference=protein motif:PF00591
AL590842.1	EMBL	ribosome_entry_site	2481005	2481008	.	-	.	ID=id5103;gbkey=regulatory;gene=trpD;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	ribosome_entry_site	2482006	2482011	.	-	.	ID=id5104;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2482014	2482592	.	-	.	ID=gene2182;Name=trpG;gbkey=Gene;gene=trpG;gene_biotype=protein_coding;locus_tag=YPO2207
AL590842.1	EMBL	CDS	2482014	2482592	.	-	0	ID=cds2145;Parent=gene2182;Dbxref=GOA:Q8ZEG6,InterPro:IPR006221,InterPro:IPR017926,InterPro:IPR029062,NCBI_GP:CAL20836.1;Name=CAL20836.1;Note=Similar to Serratia marcescens anthranilate synthase component II TrpG SW:TRPG_SERMA (P00900) (192 aa) fasta scores: E(): 0%2C 86.9%25 id in 191 aa%2C and to the N-terminal region of Escherichia coli anthranilate synthase component II TrpD SW:TRPG_ECOLI (P00904) (530 aa) fasta scores: E(): 0%2C 82.0%25 id in 189 aa;gbkey=CDS;gene=trpG;product=anthranilate synthase component II;protein_id=CAL20836.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2482023	2482580	.	-	.	ID=id5105;Note=Pfam match to entry PF00117 GATase%2C Glutamine amidotransferase class-I%2C score 226.70%2C E-value 3.3e-64;gbkey=misc_feature;gene=trpG;inference=protein motif:PF00117
AL590842.1	EMBL	sequence_feature	2482323	2482358	.	-	.	ID=id5106;Note=PS00442 Glutamine amidotransferases class-I active site.;gbkey=misc_feature;gene=trpG;inference=protein motif:ProSite:PS00442
AL590842.1	EMBL	gene	2482592	2484157	.	-	.	ID=gene2183;Name=trpE;gbkey=Gene;gene=trpE;gene_biotype=protein_coding;locus_tag=YPO2208
AL590842.1	EMBL	CDS	2482592	2484157	.	-	0	ID=cds2146;Parent=gene2183;Dbxref=GOA:Q7CIM3,InterPro:IPR005257,InterPro:IPR005801,InterPro:IPR006805,InterPro:IPR015890,InterPro:IPR019999,UniProtKB/TrEMBL:Q7CIM3,NCBI_GP:CAL20837.1;Name=CAL20837.1;Note=Similar to Escherichia coli anthranilate synthase component I TrpE SW:TRPE_ECOLI (P00895) (520 aa) fasta scores: E(): 0%2C 76.0%25 id in 520 aa%2C and to Salmonella typhimurium anthranilate synthase component I TrpE SW:TRPE_SALTY (P00898) (520 aa) fasta scores: E(): 0%2C 74.4%25 id in 520 aa;gbkey=CDS;gene=trpE;product=anthranilate synthase component I;protein_id=CAL20837.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2482625	2483434	.	-	.	ID=id5107;Note=Pfam match to entry PF00425 chorismate_bind%2Cchorismate binding enzyme%2C score 539.00%2C E-value 3.3e-158;gbkey=misc_feature;gene=trpE;inference=protein motif:PF00425
AL590842.1	EMBL	ribosome_entry_site	2482601	2482606	.	-	.	ID=id5108;gbkey=regulatory;gene=trpE;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2484273	2484335	.	-	.	ID=gene2184;Name=YPO2209;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2209
AL590842.1	EMBL	CDS	2484273	2484335	.	-	0	ID=cds2147;Parent=gene2184;Dbxref=InterPro:IPR013205,UniProtKB/TrEMBL:Q74TW7,NCBI_GP:CAL20838.1;Name=CAL20838.1;Note=Putative trp operon leader peptide;gbkey=CDS;product=putative trp operon leader peptide;protein_id=CAL20838.1;transl_table=11
AL590842.1	EMBL	gene	2484364	2484492	.	-	.	ID=gene2185;Name=YPO2210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2210
AL590842.1	EMBL	CDS	2484364	2484492	.	-	0	ID=cds2148;Parent=gene2185;Dbxref=UniProtKB/TrEMBL:Q0WEV7,NCBI_GP:CAL20839.1;Name=CAL20839.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20839.1;transl_table=11
AL590842.1	EMBL	gene	2484609	2485508	.	+	.	ID=gene2186;Name=trpH;gbkey=Gene;gene=trpH;gene_biotype=protein_coding;locus_tag=YPO2211
AL590842.1	EMBL	CDS	2484609	2485508	.	+	0	ID=cds2149;Parent=gene2186;Dbxref=GOA:Q74TW6,InterPro:IPR003141,InterPro:IPR004013,InterPro:IPR016195,UniProtKB/TrEMBL:Q74TW6,NCBI_GP:CAL20840.1;Name=CAL20840.1;Note=Similar to Salmonella typhimurium hypothetical protein TrpH SW:TRPH_SALTY (O54453) (289 aa) fasta scores: E(): 0%2C 71.9%25 id in 274 aa%2C and to Escherichia coli hypothetical protein TrpH SW:TRPH_ECOLI (P77766) (293 aa) fasta scores: E(): 0%2C 73.0%25 id in 274 aa;gbkey=CDS;gene=trpH;product=conserved hypothetical protein;protein_id=CAL20840.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2484657	2484854	.	+	.	ID=id5109;Note=Pfam match to entry PF02231 PHP_N%2C PHP domain N-terminal region%2C score 81.50%2C E-value 1.7e-20;gbkey=misc_feature;gene=trpH;inference=protein motif:PF02231
AL590842.1	EMBL	ribosome_entry_site	2485514	2485518	.	+	.	ID=id5110;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2485525	2486145	.	+	.	ID=gene2187;Name=YPO2212;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2212
AL590842.1	EMBL	CDS	2485525	2486145	.	+	0	ID=cds2150;Parent=gene2187;Dbxref=GOA:Q7CIM2,InterPro:IPR006070,InterPro:IPR017945,UniProtKB/TrEMBL:Q7CIM2,NCBI_GP:CAL20841.1;Name=CAL20841.1;Note=Similar to Escherichia coli hypothetical protein YciO SW:YCIO_ECOLI (P45847) (206 aa) fasta scores: E(): 0%2C80.0%25 id in 205 aa%2C and to Vibrio cholerae hypothetical protein VC1178 vc1178 TR:Q9KSS8 (EMBL:AE004197) (206 aa) fasta scores: E(): 0%2C 74.3%25 id in 206 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004197;product=conserved hypothetical protein;protein_id=CAL20841.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2485588	2486118	.	+	.	ID=id5111;Note=Pfam match to entry PF01300 Sua5_yciO_yrdC%2CSUA5/yciO/yrdC family%2C score 257.20%2C E-value 2.2e-73;gbkey=misc_feature;inference=protein motif:PF01300
AL590842.1	EMBL	sequence_feature	2485609	2485647	.	+	.	ID=id5112;Note=PS01147 SUA5/yciO/yrdC family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01147
AL590842.1	EMBL	ribosome_entry_site	2486481	2486485	.	+	.	ID=id5113;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2486570	2487526	.	+	.	ID=gene2188;Name=YPO2213;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2213
AL590842.1	EMBL	CDS	2486570	2487526	.	+	0	ID=cds2151;Parent=gene2188;Dbxref=GOA:Q8ZEG0,InterPro:IPR000748,InterPro:IPR002942,InterPro:IPR006145,InterPro:IPR018496,InterPro:IPR020103,NCBI_GP:CAL20842.1;Name=CAL20842.1;Note=N-terminal region of the CDS is similar to Bacillus subtilis ribosomal large subunit pseudouridine synthase B RluB SW:RLUB_BACSU (P35159) (229 aa) fasta scores: E(): 1.1e-24%2C 41.525%25 id in 236 aa%2C and to Escherichia coli hypothetical protein YciL SW:YCIL_ECOLI (P37765) (291 aa) fasta scores: E(): 4.8e-94%2C 83.448%25 id in 290 aa;gbkey=CDS;product=putative RNA pseudouridylate synthase-family protein;protein_id=CAL20842.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2486582	2486713	.	+	.	ID=id5114;Note=Pfam match to entry PF01479 S4%2C S4 domain%2C score 25.90%2C E-value 0.00093;gbkey=misc_feature;inference=protein motif:PF01479
AL590842.1	EMBL	sequence_feature	2486771	2487175	.	+	.	ID=id5115;Note=Pfam match to entry PF00849 PseudoU_synth_2%2C RNA pseudouridylate synthase%2C score 56.60%2C E-value 5.4e-13;gbkey=misc_feature;inference=protein motif:PF00849
AL590842.1	EMBL	sequence_feature	2486888	2486932	.	+	.	ID=id5116;Note=PS01149 Rsu family of pseudouridine synthase signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01149
AL590842.1	EMBL	gene	2487649	2488239	.	-	.	ID=gene2189;Name=btuR;gbkey=Gene;gene=btuR;gene_biotype=protein_coding;gene_synonym=cobA;locus_tag=YPO2214
AL590842.1	EMBL	CDS	2487649	2488239	.	-	0	ID=cds2152;Parent=gene2189;Dbxref=GOA:Q7CIM1,InterPro:IPR003724,InterPro:IPR025826,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CIM1,NCBI_GP:CAL20843.1;Name=CAL20843.1;Note=Similar to Escherichia coli cob(I)alamin adenolsyltransferase BtuR SW:BTUR_ECOLI (P13040) (196 aa) fasta scores: E(): 0%2C 79.1%25 id in 196 aa%2C and to Salmonella typhimurium cob(I)alamin adenosyltransferase BtuR SW:BTUR_SALTY (P31570) (196 aa) fasta scores: E(): 0%2C 78.1%25 id in 196 aa;gbkey=CDS;gene=btuR;product=cob(I)alamin adenosyltransferase;protein_id=CAL20843.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2488251	2488256	.	-	.	ID=id5117;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2488256	2489017	.	-	.	ID=gene2190;Name=YPO2215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2215
AL590842.1	EMBL	CDS	2488256	2489017	.	-	0	ID=cds2153;Parent=gene2190;Dbxref=GOA:Q0WEV2,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:Q0WEV2,NCBI_GP:CAL20844.1;Name=CAL20844.1;Note=Similar to Escherichia coli hypothetical oxidoreductase YciK SW:YCIK_ECOLI (P31808) (252 aa) fasta scores: E(): 0%2C 75.6%25 id in 250 aa%2C and to Vibrio cholerae possibleshort-chain dehydrogenase/reductase family oxidoreductase VC1059 TR:Q9KT46 (EMBL:AE004187) (247 aa) fasta scores: E(): 0%2C 55.2%25 id in 248 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004187;product=putative short chain dehydrogenase;protein_id=CAL20844.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2488415	2488981	.	-	.	ID=id5118;Note=Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase%2C score 215.20%2C E-value 9.4e-61;gbkey=misc_feature;inference=protein motif:PF00106
AL590842.1	EMBL	sequence_feature	2488478	2488564	.	-	.	ID=id5119;Note=PS00061 Short-chain dehydrogenases/reductases family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00061
AL590842.1	EMBL	ribosome_entry_site	2489025	2489028	.	-	.	ID=id5120;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2489189	2490235	.	+	.	ID=gene2191;Name=sohB;gbkey=Gene;gene=sohB;gene_biotype=protein_coding;locus_tag=YPO2216
AL590842.1	EMBL	CDS	2489189	2490235	.	+	0	ID=cds2154;Parent=gene2191;Dbxref=GOA:Q7CIM0,InterPro:IPR002142,InterPro:IPR013703,InterPro:IPR029045,UniProtKB/TrEMBL:Q7CIM0,NCBI_GP:CAL20845.1;Name=CAL20845.1;Note=Similar to Escherichia coli possible protease SohB SW:SOHB_ECOLI (P24213) (349 aa) fasta scores: E(): 0%2C 64.8%25 id in 349 aa%2C and to Vibrio cholerae putative U7 family peptidase VC1060 TR:Q9KT45 (EMBL:AE004187) (356 aa) fasta scores: E(): 0%2C 58.6%25 id in 353 aa;gbkey=CDS;gene=sohB;inference=similar to sequence:INSDC:AE004187;product=peptidase family U7 protein;protein_id=CAL20845.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2489207	2489275	.	+	.	ID=id5121;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=sohB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2489663	2490121	.	+	.	ID=id5122;Note=Pfam match to entry PF01343 Peptidase_U7%2C Peptidase family U7%2C score 193.60%2C E-value 3.1e-54;gbkey=misc_feature;gene=sohB;inference=protein motif:PF01343
AL590842.1	EMBL	gene	2490354	2490605	.	-	.	ID=gene2192;Name=YPO2217;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2217
AL590842.1	EMBL	CDS	2490354	2490605	.	-	0	ID=cds2155;Parent=gene2192;Dbxref=InterPro:IPR019633,UniProtKB/TrEMBL:Q7CIL9,NCBI_GP:CAL20846.1;Name=CAL20846.1;Note=Similar to Escherichia coli hypothetical protein YciN SW:YCIN_ECOLI (P46132) (83 aa) fasta scores: E(): 2.5e-22%2C 68.7%25 id in 83 aa%2C and to Vibrio cholerae hypothetical protein VC1731 TR:Q9KRB1 (EMBL:AE004251) (82 aa) fasta scores: E(): 1.8e-15%2C 61.3%25 id in 75 aa%3B~Similar to Vibrio cholerae hypothetical protein Vc1731 vc1731 TR:Q9KRB1 (EMBL:AE004251) (82 aa) fasta scores: E(): 1.8e-15%2C 61.3%25 id in 75 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004251;product=conserved hypothetical protein;protein_id=CAL20846.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2490613	2490616	.	-	.	ID=id5123;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2490623	2490997	.	+	.	ID=gene2193;Name=YPO2217a;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2217a
AL590842.1	EMBL	CDS	2490623	2490997	.	+	0	ID=cds2156;Parent=gene2193;Dbxref=UniProtKB/TrEMBL:Q0WEU9,NCBI_GP:CAL20847.1;Name=CAL20847.1;Note=Doubtful CDS. No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20847.1;transl_table=11
AL590842.1	EMBL	gene	2491024	2493639	.	+	.	ID=gene2194;Name=supX;gbkey=Gene;gene=supX;gene_biotype=protein_coding;gene_synonym=topA;locus_tag=YPO2218
AL590842.1	EMBL	CDS	2491024	2493639	.	+	0	ID=cds2157;Parent=gene2194;Dbxref=GOA:Q7CIL8,InterPro:IPR000380,InterPro:IPR003601,InterPro:IPR003602,InterPro:IPR005733,InterPro:IPR006171,InterPro:IPR013263,InterPro:IPR013497,InterPro:IPR013498,InterPro:IPR013824,InterPro:IPR013825,InterPro:IPR023405,InterPro:IPR023406,InterPro:IPR028612,UniProtKB/TrEMBL:Q7CIL8,NCBI_GP:CAL20848.1;Name=CAL20848.1;Note=Similar to Escherichia coli DNA topoisomerase I TopA SW:TOP1_ECOLI (P06612) (865 aa) fasta scores: E(): 0%2C 85.3%25 id in 871 aa%2C and to Vibrio cholerae DNA topoisomerase I TopA TR:Q9KRB2 (EMBL:AE004251) (876 aa) fasta scores: E(): 0%2C 69.2%25 id in 874 aa;gbkey=CDS;gene=supX;inference=similar to sequence:INSDC:AE004251;product=DNA topoisomerase I;protein_id=CAL20848.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2491030	2491461	.	+	.	ID=id5124;Note=Pfam match to entry PF01751 Toprim%2C Toprim domain%2Cscore 137.70%2C E-value 2e-37;gbkey=misc_feature;gene=supX;inference=protein motif:PF01751
AL590842.1	EMBL	sequence_feature	2491501	2492700	.	+	.	ID=id5125;Note=Pfam match to entry PF01131 Topoisom_bac%2CProkaryotic DNA topoisomerase%2C score 609.70%2C E-value 1.8e-179;gbkey=misc_feature;gene=supX;inference=protein motif:PF01131
AL590842.1	EMBL	sequence_feature	2491966	2492010	.	+	.	ID=id5126;Note=PS00396 Prokaryotic DNA topoisomerase I active site.;gbkey=misc_feature;gene=supX;inference=protein motif:ProSite:PS00396
AL590842.1	EMBL	sequence_feature	2492827	2492958	.	+	.	ID=id5127;Note=Pfam match to entry PF01396 zf-C4_Topoisom%2CTopoisomerase DNA binding C4 zinc finger%2C score 52.10%2CE-value 1.3e-11;gbkey=misc_feature;gene=supX;inference=protein motif:PF01396
AL590842.1	EMBL	sequence_feature	2493163	2493276	.	+	.	ID=id5128;Note=Pfam match to entry PF01396 zf-C4_Topoisom%2CTopoisomerase DNA binding C4 zinc finger%2C score 56.20%2CE-value 7e-13;gbkey=misc_feature;gene=supX;inference=protein motif:PF01396
AL590842.1	EMBL	gene	2494036	2495010	.	+	.	ID=gene2195;Name=cysB;gbkey=Gene;gene=cysB;gene_biotype=protein_coding;locus_tag=YPO2219
AL590842.1	EMBL	CDS	2494036	2495010	.	+	0	ID=cds2158;Parent=gene2195;Dbxref=GOA:Q7CIL7,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CIL7,NCBI_GP:CAL20849.1;Name=CAL20849.1;Note=Similar to Escherichia coli cys regulon transcriptional activator CysB SW:CYSB_ECOLI (P06613) (324 aa) fasta scores: E(): 0%2C 91.7%25 id in 324 aa%2C and to Klebsiella aerogenes cys regulon transcriptional activator CysB SW:CYSB_KLEAE (P45600) (324 aa) fasta scores: E(): 0%2C92.3%25 id in 324 aa;gbkey=CDS;gene=cysB;product=cys regulon transcriptional activator;protein_id=CAL20849.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2494042	2494476	.	+	.	ID=id5129;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 154.80%2C E-value 1.5e-42;gbkey=misc_feature;gene=cysB;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	2494087	2494179	.	+	.	ID=id5130;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature.;gbkey=misc_feature;gene=cysB;inference=protein motif:ProSite:PS00044
AL590842.1	EMBL	sequence_feature	2494249	2494290	.	+	.	ID=id5131;Note=PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site.;gbkey=misc_feature;gene=cysB;inference=protein motif:ProSite:PS00165
AL590842.1	EMBL	ribosome_entry_site	2495337	2495340	.	+	.	ID=id5132;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2495346	2496203	.	+	.	ID=gene2196;Name=YPO2220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2220
AL590842.1	EMBL	CDS	2495346	2496203	.	+	0	ID=cds2159;Parent=gene2196;Dbxref=UniProtKB/TrEMBL:Q7CIL6,NCBI_GP:CAL20850.1;Name=CAL20850.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20850.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2496558	2496562	.	+	.	ID=id5133;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2496567	2499239	.	+	.	ID=gene2197;Name=acn;gbkey=Gene;gene=acn;gene_biotype=protein_coding;gene_synonym=acnA;locus_tag=YPO2221
AL590842.1	EMBL	CDS	2496567	2499239	.	+	0	ID=cds2160;Parent=gene2197;Dbxref=GOA:Q7CIL5,InterPro:IPR000573,InterPro:IPR001030,InterPro:IPR006249,InterPro:IPR015928,InterPro:IPR015931,InterPro:IPR015932,InterPro:IPR015934,InterPro:IPR015937,InterPro:IPR018136,UniProtKB/TrEMBL:Q7CIL5,NCBI_GP:CAL20851.1;Name=CAL20851.1;Note=Similar to Escherichia coli aconitate hydratase 1 AcnA SW:ACO1_ECOLI (P25516) (890 aa) fasta scores: E(): 0%2C76.7%25 id in 889 aa%2C and to Legionella pneumophila aconitate hydratase Acn SW:ACON_LEGPN (P37032) (891 aa) fasta scores: E(): 0%2C 65.9%25 id in 885 aa;gbkey=CDS;gene=acn;product=aconitate hydratase 1;protein_id=CAL20851.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2496738	2498252	.	+	.	ID=id5134;Note=Pfam match to entry PF00330 aconitase%2C Aconitase family (aconitate hydratase)%2C score 914.60%2C E-value 5.9e-279;gbkey=misc_feature;gene=acn;inference=protein motif:PF00330
AL590842.1	EMBL	sequence_feature	2497800	2497823	.	+	.	ID=id5135;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=acn;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	2497845	2497895	.	+	.	ID=id5136;Note=PS00450 Aconitase family signature 1.;gbkey=misc_feature;gene=acn;inference=protein motif:ProSite:PS00450
AL590842.1	EMBL	sequence_feature	2498043	2498084	.	+	.	ID=id5137;Note=PS01244 Aconitase family signature 2.;gbkey=misc_feature;gene=acn;inference=protein motif:ProSite:PS01244
AL590842.1	EMBL	sequence_feature	2498631	2499149	.	+	.	ID=id5138;Note=Pfam match to entry PF00694 Aconitase_C%2C Aconitase C-terminal domain%2C score 277.90%2C E-value 1.3e-79;gbkey=misc_feature;gene=acn;inference=protein motif:PF00694
AL590842.1	EMBL	gene	2499403	2499993	.	-	.	ID=gene2198;Name=ribA;gbkey=Gene;gene=ribA;gene_biotype=protein_coding;locus_tag=YPO2222
AL590842.1	EMBL	CDS	2499403	2499993	.	-	0	ID=cds2161;Parent=gene2198;Dbxref=GOA:Q8ZEF0,InterPro:IPR000926,NCBI_GP:CAL20852.1;Name=CAL20852.1;Note=Similar to Escherichia coli GTP cyclohydrolase II RibA TR:BAA14831 (EMBL:X67876) (196 aa) fasta scores: E(): 0%2C 88.3%25 id in 196 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) GTP cyclohydrolase II RibA SW:GCH2_BUCAI (P57359) (194 aa) fasta scores: E(): 0%2C 69.4%25 id in 196 aa;gbkey=CDS;gene=ribA;inference=similar to sequence:INSDC:X67876;product=GTP cyclohydrolase II;protein_id=CAL20852.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2499481	2499993	.	-	.	ID=id5139;Note=Pfam match to entry PF00925 GTP_cyclohydro2%2C GTP cyclohydrolase II%2C score 380.00%2C E-value 2.4e-110;gbkey=misc_feature;gene=ribA;inference=protein motif:PF00925
AL590842.1	EMBL	sequence_feature	2499886	2499918	.	-	.	ID=id5140;Note=PS00626 Regulator of chromosome condensation (RCC1) signature 2.;gbkey=misc_feature;gene=ribA;inference=protein motif:ProSite:PS00626
AL590842.1	EMBL	gene	2500499	2501260	.	+	.	ID=gene2199;Name=pgpB;gbkey=Gene;gene=pgpB;gene_biotype=protein_coding;locus_tag=YPO2223
AL590842.1	EMBL	CDS	2500499	2501260	.	+	0	ID=cds2162;Parent=gene2199;Dbxref=GOA:Q7CIL4,InterPro:IPR000326,UniProtKB/TrEMBL:Q7CIL4,NCBI_GP:CAL20853.1;Name=CAL20853.1;Note=Similar to Escherichia coli phosphatidylglycerophosphatase B PgpB SW:PGPB_ECOLI (P18201) (254 aa) fasta scores: E(): 0%2C 57.5%25 id in 254 aa%2Cand to Haemophilus influenzae phosphatidylglycerophosphatase B PgpB SW:PGPB_HAEIN (P44570) (241 aa) fasta scores: E(): 1.5e-25%2C 34.7%25 id in 236 aa;gbkey=CDS;gene=pgpB;inference=protein motif:TMHMM:2.0;product=phosphatidylglycerophosphatase B;protein_id=CAL20853.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2500517	2500585	.	+	.	ID=id5141;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=pgpB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2500643	2500702	.	+	.	ID=id5142;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=pgpB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2500721	2500774	.	+	.	ID=id5143;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=pgpB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2500754	2501203	.	+	.	ID=id5144;Note=Pfam match to entry PF01569 PAP2%2C PAP2 superfamily%2Cscore 105.30%2C E-value 1.1e-27;gbkey=misc_feature;gene=pgpB;inference=protein motif:PF01569
AL590842.1	EMBL	sequence_feature	2500967	2501035	.	+	.	ID=id5145;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=pgpB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2501054	2501122	.	+	.	ID=id5146;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=pgpB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2501135	2501203	.	+	.	ID=id5147;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=pgpB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2501429	2501740	.	+	.	ID=gene2200;Name=YPO2224;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2224
AL590842.1	EMBL	CDS	2501429	2501740	.	+	0	ID=cds2163;Parent=gene2200;Dbxref=InterPro:IPR010445,UniProtKB/TrEMBL:Q0WEU2,NCBI_GP:CAL20854.1;Name=CAL20854.1;Note=Similar to Escherichia coli hypothetical protein YciS SW:YCIS_ECOLI (P77614) (102 aa) fasta scores: E(): 1.2e-25%2C 68.9%25 id in 103 aa%2C and to Haemophilus influenzae hypothetical protein HI1222 SW:YCIS_HAEIN (P44129) (97 aa) fasta scores: E(): 8.2e-13%2C 37.9%25 id in 87 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL20854.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2501441	2501497	.	+	.	ID=id5148;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2501537	2501599	.	+	.	ID=id5149;Note=PS00079 Multicopper oxidases signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS00079
AL590842.1	EMBL	sequence_feature	2501555	2501623	.	+	.	ID=id5150;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2501747	2502916	.	+	.	ID=gene2201;Name=YPO2225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2225
AL590842.1	EMBL	CDS	2501747	2502916	.	+	0	ID=cds2164;Parent=gene2201;Dbxref=GOA:Q7CIL3,InterPro:IPR011990,InterPro:IPR013026,InterPro:IPR019734,UniProtKB/TrEMBL:Q7CIL3,NCBI_GP:CAL20855.1;Name=CAL20855.1;Note=Similar to Escherichia coli hypothetical protein YciM SW:YCIM_ECOLI (P45576) (389 aa) fasta scores: E(): 0%2C77.8%25 id in 388 aa%2C and to Vibrio cholerae hypothetical protein VC1912 vc1912 TR:Q9KQT6 (EMBL:AE004267) (389 aa) fasta scores: E(): 0%2C 56.3%25 id in 389 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004267;product=conserved hypothetical protein;protein_id=CAL20855.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2502284	2502385	.	+	.	ID=id5151;Note=Pfam match to entry PF00515 TPR%2C TPR Domain%2C score 4.40%2C E-value 16;gbkey=misc_feature;inference=protein motif:PF00515
AL590842.1	EMBL	sequence_feature	2502386	2502487	.	+	.	ID=id5152;Note=Pfam match to entry PF00515 TPR%2C TPR Domain%2C score 16.10%2C E-value 0.87;gbkey=misc_feature;inference=protein motif:PF00515
AL590842.1	EMBL	gene	2503038	2503340	.	-	.	ID=gene2202;Name=YPO2226;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2226
AL590842.1	EMBL	CDS	2503038	2503340	.	-	0	ID=cds2165;Parent=gene2202;Dbxref=GOA:Q7CIL2,InterPro:IPR010985,InterPro:IPR013321,UniProtKB/TrEMBL:Q7CIL2,NCBI_GP:CAL20856.1;Name=CAL20856.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20856.1;transl_table=11
AL590842.1	EMBL	gene	2503807	2504544	.	+	.	ID=gene2203;Name=pyrF;gbkey=Gene;gene=pyrF;gene_biotype=protein_coding;locus_tag=YPO2227
AL590842.1	EMBL	CDS	2503807	2504544	.	+	0	ID=cds2166;Parent=gene2203;Dbxref=GOA:P58644,InterPro:IPR001754,InterPro:IPR011060,InterPro:IPR013785,InterPro:IPR014732,InterPro:IPR018089,NCBI_GP:CAL20857.1;Name=CAL20857.1;Note=Similar to Escherichia coli orotidine 5'-phosphate decarboxylase PyrF SW:DCOP_ECOLI (P08244) (245 aa) fasta scores: E(): 0%2C 72.2%25 id in 245 aa%2C and to Salmonella typhimurium orotidine 5'-phosphate decarboxylase PyrF SW:DCOP_SALTY (P07691) (245 aa) fasta scores: E(): 0%2C 72.2%25 id in 245 aa;gbkey=CDS;gene=pyrF;product=orotidine 5'-phosphate decarboxylase;protein_id=CAL20857.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2503858	2504526	.	+	.	ID=id5153;Note=Pfam match to entry PF00215 OMPdecase%2C Orotidine 5'-phosphate decarboxylases%2C score 280.60%2C E-value 2e-80;gbkey=misc_feature;gene=pyrF;inference=protein motif:PF00215
AL590842.1	EMBL	sequence_feature	2504008	2504049	.	+	.	ID=id5154;Note=PS00156 Orotidine 5'-phosphate decarboxylase active site.;gbkey=misc_feature;gene=pyrF;inference=protein motif:ProSite:PS00156
AL590842.1	EMBL	gene	2504544	2504870	.	+	.	ID=gene2204;Name=YPO2228;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2228
AL590842.1	EMBL	CDS	2504544	2504870	.	+	0	ID=cds2167;Parent=gene2204;Dbxref=GOA:Q7CIL1,InterPro:IPR001950,InterPro:IPR005872,UniProtKB/TrEMBL:Q7CIL1,NCBI_GP:CAL20858.1;Name=CAL20858.1;Note=Similar to Escherichia coli hypothetical protein YciH SW:YCIH_ECOLI (P08245) (108 aa) fasta scores: E(): 1.3e-30%2C 80.6%25 id in 108 aa%2C and to Salmonella typhimurium hypothetical protein YciH SW:YCIH_SALTY (P20770) (108 aa) fasta scores: E(): 1e-29%2C 78.7%25 id in 108 aa%3B~Similar to Escherichia coli protein YciH SW:YCIH_ECOLI (P08245) (108 aa) fasta scores: E(): 1.3e-30%2C80.6%25 id in 108 aa;gbkey=CDS;product=translation initiation factor SUI1 family protein;protein_id=CAL20858.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2504562	2504867	.	+	.	ID=id5155;Note=Pfam match to entry PF01253 SUI1%2C Translation initiation factor SUI1%2C score 155.90%2C E-value 6.8e-43;gbkey=misc_feature;inference=protein motif:PF01253
AL590842.1	EMBL	sequence_feature	2504787	2504810	.	+	.	ID=id5156;Note=PS01118 Translation initiation factor SUI1 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01118
AL590842.1	EMBL	gene	2505108	2505323	.	-	.	ID=gene2205;Name=osmB;gbkey=Gene;gene=osmB;gene_biotype=protein_coding;locus_tag=YPO2229
AL590842.1	EMBL	CDS	2505108	2505323	.	-	0	ID=cds2168;Parent=gene2205;Dbxref=GOA:Q7CIL0,InterPro:IPR008816,UniProtKB/TrEMBL:Q7CIL0,NCBI_GP:CAL20859.1;Name=CAL20859.1;Note=Similar to Escherichia coli osmotically inducible lipoprotein B precursor OsmB SW:OSMB_ECOLI (P17873) (72 aa) fasta scores: E(): 9.1e-16%2C 79.2%25 id in 72 aa;gbkey=CDS;gene=osmB;product=osmotically inducible lipoprotein B precursor;protein_id=CAL20859.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2505153	2505218	.	-	.	ID=id5157;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=osmB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2505252	2505284	.	-	.	ID=id5158;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=osmB;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	2505803	2506498	.	+	.	ID=gene2206;Name=araD;gbkey=Gene;gene=araD;gene_biotype=protein_coding;locus_tag=YPO2230
AL590842.1	EMBL	CDS	2505803	2506498	.	+	0	ID=cds2169;Parent=gene2206;Dbxref=GOA:Q0WET6,InterPro:IPR001303,InterPro:IPR004661,UniProtKB/TrEMBL:Q0WET6,NCBI_GP:CAL20860.1;Name=CAL20860.1;Note=Similar to Salmonella typhimurium L-ribulose-5-phosphate 4-epimerase AraD SW:ARAD_SALTY (P06190) (231 aa) fasta scores: E(): 0%2C 75.8%25 id in 231 aa%2Cand to Escherichia coli L-ribulose-5-phosphate 4-epimerase AraD SW:ARAD_ECOLI (P08203) (231 aa) fasta scores: E(): 0%2C74.9%25 id in 231 aa. CDS is similar to YPO3326 (256 aa) fasta scores: E(): 0%2C 69.9%25 identity in 249 aa overlap;gbkey=CDS;gene=araD;product=L-ribulose-5-phosphate 4-epimerase;protein_id=CAL20860.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2505809	2506486	.	+	.	ID=id5159;Note=Pfam match to entry PF00596 Aldolase_II%2C Class II Aldolase and Adducin N-terminal domain.%2C score 400.60%2CE-value 1.5e-116;gbkey=misc_feature;gene=araD;inference=protein motif:PF00596
AL590842.1	EMBL	gene	2506527	2506775	.	-	.	ID=gene2207;Name=YPO2231;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2231
AL590842.1	EMBL	CDS	2506527	2506775	.	-	0	ID=cds2170;Parent=gene2207;Dbxref=InterPro:IPR018680,UniProtKB/TrEMBL:Q7CIK9,NCBI_GP:CAL20861.1;Name=CAL20861.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20861.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2506784	2506787	.	-	.	ID=id5160;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2507109	2507774	.	+	.	ID=gene2208;Name=mipB;gbkey=Gene;gene=mipB;gene_biotype=protein_coding;locus_tag=YPO2232
AL590842.1	EMBL	CDS	2507109	2507774	.	+	0	ID=cds2171;Parent=gene2208;Dbxref=GOA:Q0WET4,InterPro:IPR001585,InterPro:IPR004731,InterPro:IPR013785,InterPro:IPR018225,UniProtKB/TrEMBL:Q0WET4,NCBI_GP:CAL20862.1;Name=CAL20862.1;Note=Similar to Escherichia coli transaldolase-like protein MipB SW:MIPB_ECOLI (P78055) (220 aa) fasta scores: E(): 0%2C 68.8%25 id in 218 aa%2C and to Escherichia coli transaldolase-like protein TalC SW:TALC_ECOLI (P32669) (220 aa) fasta scores: E(): 0%2C 66.4%25 id in 220 aa;gbkey=CDS;gene=mipB;product=putative transaldolase;protein_id=CAL20862.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2507109	2507669	.	+	.	ID=id5161;Note=Pfam match to entry PF00923 Transaldolase%2CTransaldolase%2C score 231.70%2C E-value 1.1e-65;gbkey=misc_feature;gene=mipB;inference=protein motif:PF00923
AL590842.1	EMBL	sequence_feature	2507178	2507204	.	+	.	ID=id5162;Note=PS01054 Transaldolase signature 1.;gbkey=misc_feature;gene=mipB;inference=protein motif:ProSite:PS01054
AL590842.1	EMBL	sequence_feature	2507352	2507405	.	+	.	ID=id5163;Note=PS00958 Transaldolase active site.;gbkey=misc_feature;gene=mipB;inference=protein motif:ProSite:PS00958
AL590842.1	EMBL	gene	2507891	2508196	.	-	.	ID=gene2209;Name=YPO2233;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2233
AL590842.1	EMBL	CDS	2507891	2508196	.	-	0	ID=cds2172;Parent=gene2209;Dbxref=InterPro:IPR007423,UniProtKB/TrEMBL:Q0WET3,NCBI_GP:CAL20863.1;Name=CAL20863.1;Note=C-terminal region is similar to Escherichia coli hypothetical protein YbdD SW:YBDD_ECOLI (P23518) (65 aa) fasta scores: E(): 5.7e-08%2C 50.9%25 id in 57 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA4605 TR:AAG07993 (EMBL:AE004874) (67 aa) fasta scores: E(): 3.3e-07%2C 47.4%25 id in 57 aa. Possible alternative translational start sites;gbkey=CDS;inference=similar to sequence:INSDC:AE004874;product=conserved hypothetical protein;protein_id=CAL20863.1;transl_table=11
AL590842.1	EMBL	gene	2508189	2510255	.	-	.	ID=gene2210;Name=cstA;gbkey=Gene;gene=cstA;gene_biotype=protein_coding;locus_tag=YPO2234
AL590842.1	EMBL	CDS	2508189	2510255	.	-	0	ID=cds2173;Parent=gene2210;Dbxref=GOA:Q0WET2,InterPro:IPR003706,InterPro:IPR025299,UniProtKB/TrEMBL:Q0WET2,NCBI_GP:CAL20864.1;Name=CAL20864.1;Note=Similar to Escherichia coli carbon starvation protein A CstA SW:CSTA_ECOLI (P15078) (701 aa) fasta scores: E(): 0%2C 61.4%25 id in 686 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA4606 TR:AAG07994 (EMBL:AE004874) (688 aa) fasta scores: E(): 0%2C 62.2%25 id in 680 aa;gbkey=CDS;gene=cstA;inference=similar to sequence:INSDC:AE004874;product=putative carbon starvation protein A;protein_id=CAL20864.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2508270	2508335	.	-	.	ID=id5164;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2508474	2508539	.	-	.	ID=id5165;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2508561	2508626	.	-	.	ID=id5166;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2508657	2508722	.	-	.	ID=id5167;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2508810	2508866	.	-	.	ID=id5168;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2509104	2509169	.	-	.	ID=id5169;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2509221	2509286	.	-	.	ID=id5170;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2509347	2509403	.	-	.	ID=id5171;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2509425	2509490	.	-	.	ID=id5172;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2509536	2509601	.	-	.	ID=id5173;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2509617	2509682	.	-	.	ID=id5174;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2509713	2509778	.	-	.	ID=id5175;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2509842	2509907	.	-	.	ID=id5176;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2509923	2509988	.	-	.	ID=id5177;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2510097	2510162	.	-	.	ID=id5178;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2510178	2510234	.	-	.	ID=id5179;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	ribosome_entry_site	2508202	2508208	.	-	.	ID=id5180;gbkey=regulatory;gene=cstA;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	ribosome_entry_site	2510265	2510270	.	-	.	ID=id5181;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2510605	2512539	.	-	.	ID=gene2211;Name=rnb;gbkey=Gene;gene=rnb;gene_biotype=protein_coding;locus_tag=YPO2235
AL590842.1	EMBL	CDS	2510605	2512539	.	-	0	ID=cds2174;Parent=gene2211;Dbxref=GOA:Q8ZED8,InterPro:IPR003029,InterPro:IPR004476,InterPro:IPR011129,InterPro:IPR011804,InterPro:IPR012340,InterPro:IPR013223,InterPro:IPR022966,InterPro:IPR022967,NCBI_GP:CAL20865.1;Name=CAL20865.1;Note=Similar to Escherichia coli exoribonuclease II Rnb SW:RNB_ECOLI (P30850) (644 aa) fasta scores: E(): 0%2C 74.4%25 id in 644 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) exoribonuclease II Rnb SW:RNB_BUCAI (P57354) (649 aa) fasta scores: E(): 0%2C 55.0%25 id in 644 aa;gbkey=CDS;gene=rnb;product=exoribonuclease II;protein_id=CAL20865.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2510623	2510871	.	-	.	ID=id5182;Note=Pfam match to entry PF00575 S1%2C S1 RNA binding domain%2C score 35.20%2C E-value 4.1e-08;gbkey=misc_feature;gene=rnb;inference=protein motif:PF00575
AL590842.1	EMBL	sequence_feature	2511016	2511090	.	-	.	ID=id5183;Note=PS01175 Ribonuclease II family signature.;gbkey=misc_feature;gene=rnb;inference=protein motif:ProSite:PS01175
AL590842.1	EMBL	sequence_feature	2511118	2512188	.	-	.	ID=id5184;Note=Pfam match to entry PF00773 RNB%2C RNB-like proteins%2Cscore 354.30%2C E-value 1.3e-102;gbkey=misc_feature;gene=rnb;inference=protein motif:PF00773
AL590842.1	EMBL	ribosome_entry_site	2513177	2513181	.	+	.	ID=id5185;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2513188	2514498	.	+	.	ID=gene2212;Name=YPO2237;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2237
AL590842.1	EMBL	CDS	2513188	2514498	.	+	0	ID=cds2175;Parent=gene2212;Dbxref=GOA:Q7CIK8,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q7CIK8,NCBI_GP:CAL20866.1;Name=CAL20866.1;Note=Similar to Burkholderia cepacia phthalate transporter OphD TR:Q9RPP3 (EMBL:AF152094) (448 aa) fasta scores: E(): 0%2C 44.4%25 id in 428 aa%2C and to Pseudomonas aeruginosa probable Mfs transporter PA4126 TR:AAG07513 (EMBL:AE004829) (434 aa) fasta scores: E(): 0%2C 45.9%25 id in 431 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF152094;product=putative integral membrane protein;protein_id=CAL20866.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2513263	2513322	.	+	.	ID=id5186;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2513266	2514486	.	+	.	ID=id5187;Note=Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporter%2C score -58.60%2C E-value 9.3e-05;gbkey=misc_feature;inference=protein motif:PF00083
AL590842.1	EMBL	sequence_feature	2513380	2513448	.	+	.	ID=id5188;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2513467	2513535	.	+	.	ID=id5189;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2513545	2513613	.	+	.	ID=id5190;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2513647	2513715	.	+	.	ID=id5191;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2513743	2513811	.	+	.	ID=id5192;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2513944	2514012	.	+	.	ID=id5193;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2514040	2514108	.	+	.	ID=id5194;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2514142	2514201	.	+	.	ID=id5195;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2514211	2514279	.	+	.	ID=id5196;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2514298	2514366	.	+	.	ID=id5197;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2514409	2514477	.	+	.	ID=id5198;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	ribosome_entry_site	2514521	2514527	.	+	.	ID=id5199;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2514533	2515534	.	+	.	ID=gene2213;Name=YPO2238;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2238
AL590842.1	EMBL	CDS	2514533	2515534	.	+	0	ID=cds2176;Parent=gene2213;Dbxref=GOA:Q7CIK7,InterPro:IPR001509,InterPro:IPR016040,UniProtKB/TrEMBL:Q7CIK7,NCBI_GP:CAL20867.1;Name=CAL20867.1;Note=Similar to Alcaligenes eutrophus hypothetical protein TR:Q44016 (EMBL:L36817) (324 aa) fasta scores: E(): 0%2C 54.4%25 id in 318 aa%2C and to Haemophilus influenzae hypothetical protein HI1014 SW:YA14_HAEIN (P44094) (315 aa) fasta scores: E(): 0%2C 45.8%25 id in 319 aa;gbkey=CDS;inference=similar to sequence:INSDC:L36817;product=conserved hypothetical protein;protein_id=CAL20867.1;transl_table=11
AL590842.1	EMBL	gene	2515717	2516358	.	-	.	ID=gene2214;Name=nth;gbkey=Gene;gene=nth;gene_biotype=protein_coding;locus_tag=YPO2239
AL590842.1	EMBL	CDS	2515717	2516358	.	-	0	ID=cds2177;Parent=gene2214;Dbxref=GOA:Q7CIK6,InterPro:IPR000445,InterPro:IPR003265,InterPro:IPR003583,InterPro:IPR003651,InterPro:IPR004035,InterPro:IPR004036,InterPro:IPR005759,InterPro:IPR011257,InterPro:IPR023170,UniProtKB/TrEMBL:Q7CIK6,NCBI_GP:CAL20868.1;Name=CAL20868.1;Note=Similar to Escherichia coli endonuclease III Nth SW:END3_ECOLI (P20625) (211 aa) fasta scores: E(): 0%2C 88.5%25 id in 209 aa%2C and to Vibrio cholerae endonuclease III VC1011 TR:Q9KT92 (EMBL:AE004183) (213 aa) fasta scores: E(): 0%2C 84.4%25 id in 212 aa;gbkey=CDS;gene=nth;inference=similar to sequence:INSDC:AE004183;product=endonuclease III;protein_id=CAL20868.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2515750	2515800	.	-	.	ID=id5200;Note=PS00764 Endonuclease III iron-sulfur binding region signature.;gbkey=misc_feature;gene=nth;inference=protein motif:ProSite:PS00764
AL590842.1	EMBL	sequence_feature	2515807	2516271	.	-	.	ID=id5201;Note=Pfam match to entry PF00730 HhH-GPD%2C HhH-GPD superfamily base excision DNA repair protein%2C score 259.40%2CE-value 5e-74;gbkey=misc_feature;gene=nth;inference=protein motif:PF00730
AL590842.1	EMBL	sequence_feature	2515966	2516055	.	-	.	ID=id5202;Note=PS01155 Endonuclease III family signature.;gbkey=misc_feature;gene=nth;inference=protein motif:ProSite:PS01155
AL590842.1	EMBL	gene	2516355	2517056	.	-	.	ID=gene2215;Name=YPO2240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2240
AL590842.1	EMBL	CDS	2516355	2517056	.	-	0	ID=cds2178;Parent=gene2215;Dbxref=GOA:Q8ZED4,InterPro:IPR003667,InterPro:IPR010968,NCBI_GP:CAL20869.1;Name=CAL20869.1;Note=Similar to Escherichia coli hypothetical protein YdgQ SW:YDGQ_ECOLI (P77179) (231 aa) fasta scores: E(): 0%2C77.4%25 id in 230 aa%2C and to Vibrio cholerae RnfE-related protein VC1012 TR:Q9KT91 (EMBL:AE004183) (230 aa) fasta scores: E(): 0%2C 65.1%25 id in 232 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004183;product=putative membrane protein;protein_id=CAL20869.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2516439	2516504	.	-	.	ID=id5203;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2516613	2516678	.	-	.	ID=id5204;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2516718	2516783	.	-	.	ID=id5205;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2516796	2516849	.	-	.	ID=id5206;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2516889	2516954	.	-	.	ID=id5207;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2517053	2517682	.	-	.	ID=gene2216;Name=YPO2241;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2241
AL590842.1	EMBL	CDS	2517053	2517682	.	-	0	ID=cds2179;Parent=gene2216;Dbxref=GOA:Q8ZED3,InterPro:IPR007329,InterPro:IPR010209,InterPro:IPR022989,NCBI_GP:CAL20870.1;Name=CAL20870.1;Note=Similar to Rhodobacter capsulatus putative nitrogen fixation protein RnfG SW:RNFG_RHOCA (P97054) (217 aa) fasta scores: E(): 6.3e-26%2C 42.7%25 id in 199 aa%2C and to Escherichia coli hypothetical protein YdgQ SW:YDGP_ECOLI (P77285) (206 aa) fasta scores: E(): 0%2C 70.0%25 id in 207 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL20870.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2517064	2517067	.	-	.	ID=id5208;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	ribosome_entry_site	2517688	2517693	.	-	.	ID=id5209;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2517692	2518747	.	-	.	ID=gene2217;Name=YPO2242;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2242
AL590842.1	EMBL	CDS	2517692	2518747	.	-	0	ID=cds2180;Parent=gene2217;Dbxref=GOA:Q8ZED2,InterPro:IPR004338,InterPro:IPR011303,NCBI_GP:CAL20871.1;Name=CAL20871.1;Note=Similar to Rhodobacter capsulatus putative nitrogen fixation protein RnfD SW:RNFD_RHOCA (Q52715) (358 aa) fasta scores: E(): 0%2C 37.5%25 id in 315 aa%2C and to Escherichia coli hypothetical protein YdgO SW:YDGO_ECOLI (P76182) (352 aa) fasta scores: E(): 0%2C 68.6%25 id in 350 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative integral membrane protein;protein_id=CAL20871.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2517803	2517853	.	-	.	ID=id5210;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2517875	2517940	.	-	.	ID=id5211;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2517971	2518036	.	-	.	ID=id5212;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2518052	2518117	.	-	.	ID=id5213;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2518316	2518381	.	-	.	ID=id5214;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2518403	2518468	.	-	.	ID=id5215;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2518628	2518693	.	-	.	ID=id5216;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2519275	2520168	.	+	.	ID=gene2218;Name=YPO2243;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2243
AL590842.1	EMBL	CDS	2519275	2520168	.	+	0	ID=cds2181;Parent=gene2218;Dbxref=GOA:Q7CIK5,InterPro:IPR009057,InterPro:IPR011256,InterPro:IPR018060,InterPro:IPR020449,InterPro:IPR029442,UniProtKB/TrEMBL:Q7CIK5,NCBI_GP:CAL20872.1;Name=CAL20872.1;Note=Similar to Escherichia coli right origin-binding protein Rob SW:ROB_ECOLI (P27292) (289 aa) fasta scores: E(): 1.1e-23%2C 32.1%25 id in 265 aa;gbkey=CDS;product=putative AraC-family transcriptional regulatory protein;protein_id=CAL20872.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2519341	2519601	.	+	.	ID=id5217;Note=Pfam match to entry PF00165 HTH_AraC%2C Bacterial regulatory helix-turn-helix proteins%2C araC family%2C score 108.50%2C E-value 1.3e-28;gbkey=misc_feature;inference=protein motif:PF00165
AL590842.1	EMBL	sequence_feature	2519344	2519409	.	+	.	ID=id5218;Note=Predicted helix-turn-helix motif with score 1268 (+3.51 SD) at aa 24-45%2C sequence PTLDDVAKISGYSKWHLQRKFK;gbkey=misc_feature
AL590842.1	EMBL	gene	2520273	2522135	.	-	.	ID=gene2219;Name=YPO2244;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2244
AL590842.1	EMBL	CDS	2520273	2522135	.	-	0	ID=cds2182;Parent=gene2219;Dbxref=GOA:Q0WES3,InterPro:IPR001450,InterPro:IPR009051,InterPro:IPR010208,InterPro:IPR011538,InterPro:IPR017896,InterPro:IPR017900,InterPro:IPR019554,InterPro:IPR026902,UniProtKB/TrEMBL:Q0WES3,NCBI_GP:CAL20873.1;Name=CAL20873.1;Note=Similar to Rhodobacter capsulatus nitrogen fixation iron-sulphur protein RnfC TR:Q52716 (EMBL:X72888) (519 aa) fasta scores: E(): 0%2C 38.7%25 id in 488 aa%2C and to Escherichia coli hypothetical protein TR:P77611 (EMBL:D90807) (740 aa) fasta scores: E(): 0%2C 65.1%25 id in 616 aa;gbkey=CDS;inference=similar to sequence:INSDC:X72888;product=putative iron-sulfur binding NADH dehydrogenase;protein_id=CAL20873.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2520840	2520911	.	-	.	ID=id5219;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 20.70%2C E-value 0.0016;gbkey=misc_feature;inference=protein motif:PF00037
AL590842.1	EMBL	sequence_feature	2520855	2520890	.	-	.	ID=id5220;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00198
AL590842.1	EMBL	sequence_feature	2520957	2521028	.	-	.	ID=id5221;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 19.80%2C E-value 0.0022;gbkey=misc_feature;inference=protein motif:PF00037
AL590842.1	EMBL	sequence_feature	2520972	2521007	.	-	.	ID=id5222;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00198
AL590842.1	EMBL	sequence_feature	2521029	2521856	.	-	.	ID=id5223;Note=Pfam match to entry PF01512 Complex1_51K%2CRespiratory-chain NADH dehydrogenase 51 Kd subunit%2C score 281.80%2C E-value 8.9e-81;gbkey=misc_feature;inference=protein motif:PF01512
AL590842.1	EMBL	ribosome_entry_site	2522140	2522143	.	-	.	ID=id5224;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2522185	2522751	.	-	.	ID=gene2220;Name=YPO2245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2245
AL590842.1	EMBL	CDS	2522185	2522751	.	-	0	ID=cds2183;Parent=gene2220;Dbxref=GOA:Q8ZEC9,InterPro:IPR007202,InterPro:IPR010207,InterPro:IPR016463,InterPro:IPR017896,InterPro:IPR017900,NCBI_GP:CAL20874.1;Name=CAL20874.1;Note=Similar to Rhodobacter capsulatus putative iron-sulfur protein RnfB TR:Q07394 (EMBL:X72888) (187 aa) fasta scores: E(): 2e-27%2C 43.3%25 id in 171 aa%2C and to Escherichia coli putative ferredoxin-like protein in YdgM SW:YDGM_ECOLI (P77223) (192 aa) fasta scores: E(): 0%2C 72.2%25 id in 187 aa;gbkey=CDS;inference=similar to sequence:INSDC:X72888;product=putative iron-sulfur protein;protein_id=CAL20874.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2522263	2522334	.	-	.	ID=id5225;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 27.10%2C E-value 0.00016;gbkey=misc_feature;inference=protein motif:PF00037
AL590842.1	EMBL	sequence_feature	2522278	2522313	.	-	.	ID=id5226;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00198
AL590842.1	EMBL	sequence_feature	2522353	2522424	.	-	.	ID=id5227;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 32.50%2C E-value 9.7e-06;gbkey=misc_feature;inference=protein motif:PF00037
AL590842.1	EMBL	sequence_feature	2522368	2522403	.	-	.	ID=id5228;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00198
AL590842.1	EMBL	sequence_feature	2522674	2522739	.	-	.	ID=id5229;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2522751	2523332	.	-	.	ID=gene2221;Name=YPO2246;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2246
AL590842.1	EMBL	CDS	2522751	2523332	.	-	0	ID=cds2184;Parent=gene2221;Dbxref=GOA:Q8ZEC8,InterPro:IPR003667,InterPro:IPR011293,NCBI_GP:CAL20875.1;Name=CAL20875.1;Note=Similar to Vibrio alginolyticus Nqr5 subunit of Na-translocating NADH-quinone reductase complex NqrE SW:NQRE_VIBAL (Q56589) (198 aa) fasta scores: E(): 8.7e-28%2C42.3%25 id in 196 aa%2C and to Escherichia coli hypothetical protein TR:P76181 (EMBL:AE000258) (193 aa) fasta scores: E(): 0%2C 88.1%25 id in 193 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE000258;product=putative membrane protein;protein_id=CAL20875.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2522760	2522825	.	-	.	ID=id5230;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2522871	2522927	.	-	.	ID=id5231;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2522967	2523032	.	-	.	ID=id5232;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2523078	2523143	.	-	.	ID=id5233;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2523165	2523221	.	-	.	ID=id5234;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2523252	2523317	.	-	.	ID=id5235;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2523460	2523903	.	-	.	ID=gene2222;Name=YPO2247;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2247
AL590842.1	EMBL	CDS	2523460	2523903	.	-	0	ID=cds2185;Parent=gene2222;Dbxref=InterPro:IPR019690,UniProtKB/TrEMBL:Q7CIK4,NCBI_GP:CAL20876.1;Name=CAL20876.1;Note=Similar to Escherichia coli hypothetical protein in YdgK SW:YDGK_ECOLI (P76180) (146 aa) fasta scores: E(): 1.8e-24%2C 53.2%25 id in 139 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL20876.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2523502	2523558	.	-	.	ID=id5236;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2523571	2523633	.	-	.	ID=id5237;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2523673	2523738	.	-	.	ID=id5238;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2523799	2523864	.	-	.	ID=id5239;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	ribosome_entry_site	2524366	2524369	.	+	.	ID=id5240;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	pseudogene	2524378	2526436	.	+	.	ID=gene2223;Name=YPO2249;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO2249;pseudo=true
AL590842.1	EMBL	CDS	2524378	2526436	.	+	0	ID=cds2186;Parent=gene2223;Note=Similar to Vibrio cholerae RtxB protein TR:Q9X4W4 (EMBL:AF119150) (702 aa) fasta scores: E(): 6.3e-81%2C45.926%25 id in 675 aa%2C and to Pasteurella haemolytica leukotoxin secretion ATP-binding protein LktB SW:HLYB_PASHA (P16532) (708 aa) fasta scores: E(): 5.5e-70%2C 41.882%25 id in 659 aa. There is a frameshift and an internal deletion following codon 584. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=similar to sequence:INSDC:AF119150;product=putative toxin transporter (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	2524819	2525631	.	+	.	ID=id5241;Note=Pfam match to entry PF00664 ABC_membrane%2C ABC transporter transmembrane region.%2C score 174.90%2C E-value 1.4e-48;gbkey=misc_feature;inference=protein motif:PF00664
AL590842.1	EMBL	sequence_feature	2525866	2525889	.	+	.	ID=id5242;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2524828	2524896	.	+	.	ID=gene2224;Name=YPO2248;gbkey=Gene;gene_biotype=other;locus_tag=YPO2248
AL590842.1	EMBL	sequence_feature	2524828	2524896	.	+	.	ID=id5243;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2524924	2524983	.	+	.	ID=id5244;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2525149	2525217	.	+	.	ID=id5245;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2525227	2525286	.	+	.	ID=id5246;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2525530	2525598	.	+	.	ID=id5247;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2524924	2524983	.	+	.	ID=gene2225;Name=YPO2248;gbkey=Gene;gene_biotype=other;locus_tag=YPO2248
AL590842.1	EMBL	gene	2525149	2525217	.	+	.	ID=gene2226;Name=YPO2248;gbkey=Gene;gene_biotype=other;locus_tag=YPO2248
AL590842.1	EMBL	gene	2525227	2525286	.	+	.	ID=gene2227;Name=YPO2248;gbkey=Gene;gene_biotype=other;locus_tag=YPO2248
AL590842.1	EMBL	gene	2525530	2525598	.	+	.	ID=gene2228;Name=YPO2248;gbkey=Gene;gene_biotype=other;locus_tag=YPO2248
AL590842.1	EMBL	pseudogene	2526461	2527830	.	+	.	ID=gene2229;Name=YPO2250;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO2250;pseudo=true
AL590842.1	EMBL	CDS	2526461	2527830	.	+	0	ID=cds2187;Parent=gene2229;Note=Similar to Vibrio cholerae putative RTX toxin transporter protein RtxD TR:Q9X4W5 (EMBL:AF119150) (467 aa) fasta scores: E(): 3.5e-54%2C 40.136%25 id in 441 aa%2C and to Xylella fastidiosa hemolysin secretion protein D XF2398 TR:Q9PAU7 (EMBL:AE004049) (473 aa) fasta scores: E(): 1.6e-49%2C 37.419%25 id in 465 aa. There is a frameshift and a small internal deletion following codon 332. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=similar to sequence:INSDC:AF119150;product=putative toxin transport protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	2526599	2526652	.	+	.	ID=id5248;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2527307	2527336	.	+	.	ID=id5249;Note=PS00142 Neutral zinc metallopeptidases%2C zinc-binding region signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00142
AL590842.1	EMBL	sequence_feature	2527717	2527785	.	+	.	ID=id5250;Note=PS00543 HlyD family secretion proteins signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00543
AL590842.1	EMBL	ribosome_entry_site	2527821	2527824	.	+	.	ID=id5251;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2527832	2529970	.	+	.	ID=gene2230;Name=YPO2252;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2252
AL590842.1	EMBL	CDS	2527832	2529970	.	+	0	ID=cds2188;Parent=gene2230;Dbxref=GOA:Q7CIK3,InterPro:IPR001140,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR005074,InterPro:IPR010132,InterPro:IPR011527,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CIK3,NCBI_GP:CAL20879.1;Name=CAL20879.1;Note=Similar to Actinobacillus pleuropneumoniae RTX-I toxin determinant B AppB SW:RT1B_ACTPL (P26760) (707 aa) fasta scores: E(): 0%2C 44.2%25 id in 703 aa%2C and to Vibrio cholerae putative toxin secretion transporter VC1446 TR:Q9KS15 (EMBL:AE004223) (721 aa) fasta scores: E(): 0%2C51.8%25 id in 704 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004223;product=putative toxin transport protein;protein_id=CAL20879.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2528306	2529118	.	+	.	ID=id5252;Note=Pfam match to entry PF00664 ABC_membrane%2C ABC transporter transmembrane region.%2C score 142.80%2C E-value 6e-39;gbkey=misc_feature;inference=protein motif:PF00664
AL590842.1	EMBL	sequence_feature	2528315	2528383	.	+	.	ID=id5253;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2528426	2528494	.	+	.	ID=id5254;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2528636	2528704	.	+	.	ID=id5255;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2528717	2528785	.	+	.	ID=id5256;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2529017	2529085	.	+	.	ID=id5257;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2529332	2529886	.	+	.	ID=id5258;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 220.70%2C E-value 2.2e-62;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2529353	2529376	.	+	.	ID=id5259;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	2529665	2529709	.	+	.	ID=id5260;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	2530160	2531662	.	-	.	ID=gene2231;Name=araA;gbkey=Gene;gene=araA;gene_biotype=protein_coding;locus_tag=YPO2253
AL590842.1	EMBL	CDS	2530160	2531662	.	-	0	ID=cds2189;Parent=gene2231;Dbxref=GOA:P58540,InterPro:IPR003762,InterPro:IPR004216,InterPro:IPR009015,InterPro:IPR024664,NCBI_GP:CAL20880.1;Name=CAL20880.1;Note=Similar to Escherichia coli L-arabinose isomerase AraA SW:ARAA_ECOLI (P08202) (500 aa) fasta scores: E(): 0%2C73.6%25 id in 500 aa%2C and to Salmonella typhimurium L-arabinose isomerase AraA SW:ARAA_SALTY (P06189) (500 aa) fasta scores: E(): 0%2C 73.2%25 id in 500 aa;gbkey=CDS;gene=araA;product=L-arabinose isomerase;protein_id=CAL20880.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2531669	2531672	.	-	.	ID=id5261;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2531746	2533449	.	-	.	ID=gene2232;Name=araB;gbkey=Gene;gene=araB;gene_biotype=protein_coding;locus_tag=YPO2254
AL590842.1	EMBL	CDS	2531746	2533449	.	-	0	ID=cds2190;Parent=gene2232;Dbxref=GOA:P58543,InterPro:IPR005929,InterPro:IPR018484,InterPro:IPR018485,NCBI_GP:CAL20881.1;Name=CAL20881.1;Note=Similar to Escherichia coli L-ribulokinase AraB SW:KIRI_ECOLI (P08204) (565 aa) fasta scores: E(): 0%2C 72.2%25 id in 553 aa%2C and to Salmonella typhimurium L-ribulokinase AraB SW:KIRI_SALTY (P06188) (569 aa) fasta scores: E(): 0%2C72.2%25 id in 551 aa;gbkey=CDS;gene=araB;product=L-ribulokinase;protein_id=CAL20881.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2531941	2532108	.	-	.	ID=id5262;Note=Pfam match to entry PF00370 FGGY%2C FGGY family of carbohydrate kinases%2C score 25.20%2C E-value 2e-05;gbkey=misc_feature;gene=araB;inference=protein motif:PF00370
AL590842.1	EMBL	sequence_feature	2532535	2532678	.	-	.	ID=id5263;Note=Pfam match to entry PF00370 FGGY%2C FGGY family of carbohydrate kinases%2C score 25.50%2C E-value 1.7e-05;gbkey=misc_feature;gene=araB;inference=protein motif:PF00370
AL590842.1	EMBL	ribosome_entry_site	2533458	2533462	.	-	.	ID=id5264;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	ribosome_entry_site	2533847	2533850	.	+	.	ID=id5265;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2533857	2534840	.	+	.	ID=gene2233;Name=araF;gbkey=Gene;gene=araF;gene_biotype=protein_coding;locus_tag=YPO2255
AL590842.1	EMBL	CDS	2533857	2534840	.	+	0	ID=cds2191;Parent=gene2233;Dbxref=GOA:Q7CIK2,InterPro:IPR001761,InterPro:IPR026266,InterPro:IPR028082,UniProtKB/TrEMBL:Q7CIK2,NCBI_GP:CAL20882.1;Name=CAL20882.1;Note=Similar to Escherichia coli L-arabinose-binding periplasmic protein precursor AraF SW:ARAF_ECOLI (P02924) (329 aa) fasta scores: E(): 0%2C 87.1%25 id in 326 aa%2C and to Haemophilus influenzae D-galactose-binding periplasmic protein precursor MglB SW:DGAL_HAEIN (P44883) (331 aa) fasta scores: E(): 3.5e-06%2C 26.5%25 id in 306 aa;gbkey=CDS;gene=araF;product=L-arabinose-binding periplasmic protein precursor;protein_id=CAL20882.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2533926	2534714	.	+	.	ID=id5266;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 292.90%2C E-value 4e-84;gbkey=misc_feature;gene=araF;inference=protein motif:PF00532
AL590842.1	EMBL	gene	2534971	2536509	.	+	.	ID=gene2234;Name=araG;gbkey=Gene;gene=araG;gene_biotype=protein_coding;locus_tag=YPO2256
AL590842.1	EMBL	CDS	2534971	2536509	.	+	0	ID=cds2192;Parent=gene2234;Dbxref=GOA:Q0WER5,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR017917,InterPro:IPR027417,NCBI_GP:CAL20883.1;Name=CAL20883.1;Note=Similar to Escherichia coli L-arabinose transport ATP-binding protein AraG SW:ARAG_ECOLI (P08531) (504 aa) fasta scores: E(): 0%2C 77.9%25 id in 503 aa%2C and to Streptomyces coelicolor ABC transporter protein%2C ATP binding component SCC57a.17 TR:Q9RDI1 (EMBL:AL136519) (517 aa) fasta scores: E(): 0%2C 43.3%25 id in 497 aa;gbkey=CDS;gene=araG;inference=similar to sequence:INSDC:AL136519;product=L-arabinose transport ATP-binding protein;protein_id=CAL20883.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2534998	2535021	.	+	.	ID=id5267;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=araG;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	2535070	2535630	.	+	.	ID=id5268;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 217.50%2C E-value 1.9e-61;gbkey=misc_feature;gene=araG;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2535091	2535114	.	+	.	ID=id5269;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=araG;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	2535817	2536398	.	+	.	ID=id5270;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 90.10%2C E-value 4.4e-23;gbkey=misc_feature;gene=araG;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2536171	2536215	.	+	.	ID=id5271;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=araG;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	ribosome_entry_site	2536515	2536520	.	+	.	ID=id5272;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2536527	2537576	.	+	.	ID=gene2235;Name=araH;gbkey=Gene;gene=araH;gene_biotype=protein_coding;locus_tag=YPO2257
AL590842.1	EMBL	CDS	2536527	2537576	.	+	0	ID=cds2193;Parent=gene2235;Dbxref=GOA:Q0WER4,InterPro:IPR001851,UniProtKB/TrEMBL:Q0WER4,NCBI_GP:CAL20884.1;Name=CAL20884.1;Note=Similar to Escherichia coli L-arabinose transport system permease protein AraH SW:ARAH_ECOLI (P08532) (329 aa) fasta scores: E(): 0%2C 90.3%25 id in 319 aa%2C and to Vibrio cholerae ribose ABC transporter%2C permease protein VCA0129 TR:Q9KN36 (EMBL:AE004354) (332 aa) fasta scores: E(): 0%2C38.7%25 id in 313 aa;gbkey=CDS;gene=araH;inference=similar to sequence:INSDC:AE004354;product=L-arabinose transport system permease protein;protein_id=CAL20884.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2536659	2536727	.	+	.	ID=id5273;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=araH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2536746	2536814	.	+	.	ID=id5274;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=araH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2536893	2536961	.	+	.	ID=id5275;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=araH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2536980	2537039	.	+	.	ID=id5276;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=araH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2537097	2537165	.	+	.	ID=id5277;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=araH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2537253	2537312	.	+	.	ID=id5278;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=araH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2537340	2537396	.	+	.	ID=id5279;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=araH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2537415	2537483	.	+	.	ID=id5280;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=araH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2537496	2537540	.	+	.	ID=id5281;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=araH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	ribosome_entry_site	2537787	2537791	.	+	.	ID=id5282;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2537797	2538729	.	+	.	ID=gene2236;Name=araC;gbkey=Gene;gene=araC;gene_biotype=protein_coding;locus_tag=YPO2258
AL590842.1	EMBL	CDS	2537797	2538729	.	+	0	ID=cds2194;Parent=gene2236;Dbxref=GOA:Q7CIK1,InterPro:IPR003313,InterPro:IPR009057,InterPro:IPR018060,InterPro:IPR018062,InterPro:IPR020449,UniProtKB/TrEMBL:Q7CIK1,NCBI_GP:CAL20885.1;Name=CAL20885.1;Note=Similar to Erwinia chrysanthemi arabinose operon regulatory protein AraC SW:ARAC_ERWCH (P07642) (310 aa) fasta scores: E(): 0%2C 85.3%25 id in 300 aa%2C and to Escherichia coli arabinose operon regulatory protein AraC SW:ARAC_ECOLI (P03021) (292 aa) fasta scores: E(): 0%2C 58.3%25 id in 278 aa;gbkey=CDS;gene=araC;product=arabinose operon regulatory protein;protein_id=CAL20885.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2537809	2538339	.	+	.	ID=id5283;Note=Pfam match to entry PF02311 AraC_binding%2C %2C score 456.60%2C E-value 2.2e-133;gbkey=misc_feature;gene=araC;inference=protein motif:PF02311
AL590842.1	EMBL	sequence_feature	2538391	2538651	.	+	.	ID=id5284;Note=Pfam match to entry PF00165 HTH_AraC%2C Bacterial regulatory helix-turn-helix proteins%2C araC family%2C score 132.70%2C E-value 6.6e-36;gbkey=misc_feature;gene=araC;inference=protein motif:PF00165
AL590842.1	EMBL	sequence_feature	2538394	2538459	.	+	.	ID=id5285;Note=Predicted helix-turn-helix motif with score 1772 (+5.22 SD) at aa 200-221%2C sequence LRIDEVARHVCLSPSRLAHLFR;gbkey=misc_feature;gene=araC
AL590842.1	EMBL	sequence_feature	2538502	2538630	.	+	.	ID=id5286;Note=PS00041 Bacterial regulatory proteins%2C araC family signature.;gbkey=misc_feature;gene=araC;inference=protein motif:ProSite:PS00041
AL590842.1	EMBL	ribosome_entry_site	2538846	2538849	.	+	.	ID=id5287;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2538857	2539906	.	+	.	ID=gene2237;Name=YPO2259;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2259
AL590842.1	EMBL	CDS	2538857	2539906	.	+	0	ID=cds2195;Parent=gene2237;Dbxref=GOA:Q7CIK0,InterPro:IPR000683,InterPro:IPR004104,InterPro:IPR016040,PDB:3KUX,UniProtKB/TrEMBL:Q7CIK0,NCBI_GP:CAL20886.1;Name=CAL20886.1;Note=Similar to Escherichia coli hypothetical oxidoreductase YdgJ SW:YDGJ_ECOLI (P77376) (346 aa) fasta scores: E(): 0%2C 71.7%25 id in 343 aa%2C and to Vibrio cholerae GFO/IDH/MocA family oxidoreductase VCA0099 TR:Q9KN66 (EMBL:AE004352) (346 aa) fasta scores: E(): 0%2C 48.7%25 id in 345 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004352;product=putative oxidoreductase;protein_id=CAL20886.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2538869	2539579	.	+	.	ID=id5288;Note=Pfam match to entry PF01408 GFO_IDH_MocA%2COxidoreductase family%2C score 244.20%2C E-value 1.8e-69;gbkey=misc_feature;inference=protein motif:PF01408
AL590842.1	EMBL	gene	2540100	2541128	.	+	.	ID=gene2238;Name=YPO2260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2260
AL590842.1	EMBL	CDS	2540100	2541128	.	+	0	ID=cds2196;Parent=gene2238;Dbxref=InterPro:IPR016833,UniProtKB/TrEMBL:Q7CIJ9,NCBI_GP:CAL20887.1;Name=CAL20887.1;Note=Similar to Escherichia coli hypothetical protein YfeH SW:YFEH_ECOLI (P39836) (332 aa) fasta scores: E(): 0%2C65.7%25 id in 321 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA2026 TR:AAG05414 (EMBL:AE004629) (333 aa) fasta scores: E(): 0%2C 57.0%25 id in 330 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004629;product=putative membrane protein;protein_id=CAL20887.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2540133	2540186	.	+	.	ID=id5289;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2540199	2540267	.	+	.	ID=id5290;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2540304	2540372	.	+	.	ID=id5291;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2540400	2540468	.	+	.	ID=id5292;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2540481	2540549	.	+	.	ID=id5293;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2540592	2540651	.	+	.	ID=id5294;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2540712	2540780	.	+	.	ID=id5295;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2540793	2540861	.	+	.	ID=id5296;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2540922	2540990	.	+	.	ID=id5297;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	ribosome_entry_site	2541317	2541322	.	+	.	ID=id5298;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2541334	2541933	.	+	.	ID=gene2239;Name=YPO2261;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2261
AL590842.1	EMBL	CDS	2541334	2541933	.	+	0	ID=cds2197;Parent=gene2239;Dbxref=UniProtKB/TrEMBL:Q7CIJ8,NCBI_GP:CAL20888.1;Name=CAL20888.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20888.1;transl_table=11
AL590842.1	EMBL	gene	2541982	2543526	.	-	.	ID=gene2240;Name=YPO2262;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2262
AL590842.1	EMBL	CDS	2541982	2543526	.	-	0	ID=cds2198;Parent=gene2240;Dbxref=InterPro:IPR010352,UniProtKB/TrEMBL:Q0WEQ9,NCBI_GP:CAL20889.1;Name=CAL20889.1;Note=Similar to Escherichia coli hypothetical protein YdgA SW:YDGA_ECOLI (P77804) (502 aa) fasta scores: E(): 0%2C42.6%25 id in 491 aa%2C and to Escherichia coli hypothetical protein YihF SW:YIHF_ECOLI (P32128) (490 aa) fasta scores: E(): 0%2C 28.0%25 id in 489 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL20889.1;transl_table=11
AL590842.1	EMBL	gene	2543766	2544941	.	-	.	ID=gene2241;Name=manA;gbkey=Gene;gene=manA;gene_biotype=protein_coding;gene_synonym=pmi;locus_tag=YPO2263
AL590842.1	EMBL	CDS	2543766	2544941	.	-	0	ID=cds2199;Parent=gene2241;Dbxref=GOA:Q74TS8,InterPro:IPR001250,InterPro:IPR011051,InterPro:IPR014710,InterPro:IPR016305,InterPro:IPR018050,UniProtKB/TrEMBL:Q74TS8,NCBI_GP:CAL20890.1;Name=CAL20890.1;Note=Similar to Escherichia coli mannose-6-phosphate isomerase ManA SW:MANA_ECOLI (P00946) (391 aa) fasta scores: E(): 0%2C 71.0%25 id in 389 aa%2C and to Salmonella typhimurium mannose-6-phosphate isomerase ManA SW:MANA_SALTY (P25081) (391 aa) fasta scores: E(): 0%2C 70.2%25 id in 389 aa;gbkey=CDS;gene=manA;product=mannose-6-phosphate isomerase;protein_id=CAL20890.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2543871	2544941	.	-	.	ID=id5299;Note=Pfam match to entry PF01238 PMI_typeI%2CPhosphomannose isomerase type I%2C score 515.40%2C E-value 4.3e-151;gbkey=misc_feature;gene=manA;inference=protein motif:PF01238
AL590842.1	EMBL	sequence_feature	2544102	2544179	.	-	.	ID=id5300;Note=PS00966 Phosphomannose isomerase type I signature 2.;gbkey=misc_feature;gene=manA;inference=protein motif:ProSite:PS00966
AL590842.1	EMBL	sequence_feature	2544540	2544566	.	-	.	ID=id5301;Note=PS00965 Phosphomannose isomerase type I signature 1.;gbkey=misc_feature;gene=manA;inference=protein motif:ProSite:PS00965
AL590842.1	EMBL	ribosome_entry_site	2545213	2545219	.	+	.	ID=id5302;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2545225	2546622	.	+	.	ID=gene2242;Name=fumC;gbkey=Gene;gene=fumC;gene_biotype=protein_coding;locus_tag=YPO2264
AL590842.1	EMBL	CDS	2545225	2546622	.	+	0	ID=cds2200;Parent=gene2242;Dbxref=GOA:Q8ZEB6,InterPro:IPR000362,InterPro:IPR005677,InterPro:IPR008948,InterPro:IPR018951,InterPro:IPR020557,InterPro:IPR022761,InterPro:IPR024083,NCBI_GP:CAL20891.1;Name=CAL20891.1;Note=Similar to class II fumarate hydratases%2C e.g. Escherichia coli fumarate hydratase class II FumC SW:FUMC_ECOLI (P05042) (467 aa) fasta scores: E(): 0%2C 82.8%25 id in 464 aa%2C and to Rhizopus oryzae fumarate hydratase FumR SW:FUMH_RHIOR (P55250) (494 aa) fasta scores: E(): 0%2C61.3%25 id in 460 aa;gbkey=CDS;gene=fumC;product=fumarate hydratase%2C class II;protein_id=CAL20891.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2545258	2546595	.	+	.	ID=id5303;Note=Pfam match to entry PF00206 lyase_1%2C Lyase%2C score 732.60%2C E-value 1.7e-216;gbkey=misc_feature;gene=fumC;inference=protein motif:PF00206
AL590842.1	EMBL	sequence_feature	2546173	2546202	.	+	.	ID=id5304;Note=PS00163 Fumarate lyases signature.;gbkey=misc_feature;gene=fumC;inference=protein motif:ProSite:PS00163
AL590842.1	EMBL	gene	2546702	2547637	.	-	.	ID=gene2243;Name=tau;gbkey=Gene;gene=tau;gene_biotype=protein_coding;gene_synonym=tus;locus_tag=YPO2265
AL590842.1	EMBL	CDS	2546702	2547637	.	-	0	ID=cds2201;Parent=gene2243;Dbxref=GOA:Q9L6X9,InterPro:IPR008865,NCBI_GP:CAL20892.1;Name=CAL20892.1;Note=Previously sequenced as Yersinia pestis DNA replication terminus site-binding protein Tus TR:Q9L6X9 (EMBL:AF231032) and similar to Escherichia coli DNA replication terminus site-binding protein Tus SW:TUS_ECOLI (P16525) (309 aa) fasta scores: E(): 0%2C 53.4%25 id in 307 aa;gbkey=CDS;gene=tau;inference=similar to sequence:INSDC:AF231032;product=DNA replication terminus site-binding protein;protein_id=CAL20892.1;transl_table=11
AL590842.1	EMBL	gene	2548022	2549140	.	-	.	ID=gene2244;Name=YPO2266;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2266
AL590842.1	EMBL	CDS	2548022	2549140	.	-	0	ID=cds2202;Parent=gene2244;Dbxref=GOA:Q0WEQ5,InterPro:IPR005829,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q0WEQ5,NCBI_GP:CAL20893.1;Name=CAL20893.1;Note=Similar to Escherichia coli hypothetical transport protein YnfM SW:YNFM_ECOLI (P43531) (417 aa) fasta scores: E(): 0%2C 66.3%25 id in 365 aa%2C and to Pseudomonas aeruginosa probable Mfs transporter pa5030 TR:AAG08415 (EMBL:AE004916) (438 aa) fasta scores: E(): 0%2C 61.7%25 id in 334 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004916;product=putative membrane protein;protein_id=CAL20893.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2548046	2548111	.	-	.	ID=id5305;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2548124	2548189	.	-	.	ID=id5306;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2548229	2548294	.	-	.	ID=id5307;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2548325	2548390	.	-	.	ID=id5308;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2548472	2548537	.	-	.	ID=id5309;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2548568	2548633	.	-	.	ID=id5310;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2548655	2548720	.	-	.	ID=id5311;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2548733	2548798	.	-	.	ID=id5312;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2548784	2548834	.	-	.	ID=id5313;Note=PS00216 Sugar transport proteins signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS00216
AL590842.1	EMBL	sequence_feature	2548820	2548882	.	-	.	ID=id5314;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2548928	2548993	.	-	.	ID=id5315;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	pseudogene	2549353	2550236	.	+	.	ID=gene2245;Name=YPO2267;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO2267;pseudo=true
AL590842.1	EMBL	CDS	2549353	2550236	.	+	0	ID=cds2203;Parent=gene2245;Note=Similar to Bacillus subtilis als operon regulatory protein AlsR SW:ALSR_BACSU (Q04778) (302 aa) fasta scores: E(): 1.7e-36%2C 39.519%25 id in 291 aa%2C and to Escherichia coli hypothetical transcriptional regulator YnfL SW:YNFL_ECOLI (P77559) (297 aa) fasta scores: E(): 3.7e-63%2C 57.627%25 id in 295 aa. Contains a frameshift after codon 51;gbkey=CDS;product=LysR-family transcriptional regulatory protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	2549580	2549804	.	+	.	ID=id5316;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 49.10%2C E-value 2.4e-11;gbkey=misc_feature;inference=protein motif:PF00126
AL590842.1	EMBL	ribosome_entry_site	2550438	2550444	.	+	.	ID=id5317;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2550453	2551670	.	+	.	ID=gene2246;Name=mlc;gbkey=Gene;gene=mlc;gene_biotype=protein_coding;locus_tag=YPO2268
AL590842.1	EMBL	CDS	2550453	2551670	.	+	0	ID=cds2204;Parent=gene2246;Dbxref=InterPro:IPR000600,InterPro:IPR011991,UniProtKB/TrEMBL:Q74TS7,NCBI_GP:CAL20895.1;Name=CAL20895.1;Note=Similar to Escherichia coli putative NAGC-like transcriptional regulator Mlc SW:MLC_ECOLI (P50456) (406 aa) fasta scores: E(): 0%2C 73.4%25 id in 406 aa%2C and to Vibrio cholerae ROK family transcriptional regulator VC2007 TR:Q9KQJ1 (EMBL:AE004275) (405 aa) fasta scores: E(): 0%2C48.0%25 id in 402 aa;gbkey=CDS;gene=mlc;inference=similar to sequence:INSDC:AE004275;product=putative ROK family transcriptional regulatory protein;protein_id=CAL20895.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2550543	2550608	.	+	.	ID=id5318;Note=Predicted helix-turn-helix motif with score 1041 (+2.73 SD) at aa 31-52%2C sequence ISRIELSKRAQLAPASITKIVR;gbkey=misc_feature;gene=mlc
AL590842.1	EMBL	sequence_feature	2550741	2551259	.	+	.	ID=id5319;Note=Pfam match to entry PF00480 ROK%2C ROK family%2C score 101.00%2C E-value 6e-29;gbkey=misc_feature;gene=mlc;inference=protein motif:PF00480
AL590842.1	EMBL	ribosome_entry_site	2551883	2551886	.	+	.	ID=id5320;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2551894	2552562	.	+	.	ID=gene2247;Name=bioD;gbkey=Gene;gene=bioD;gene_biotype=protein_coding;locus_tag=YPO2269
AL590842.1	EMBL	CDS	2551894	2552562	.	+	0	ID=cds2205;Parent=gene2247;Dbxref=GOA:P69953,InterPro:IPR004472,InterPro:IPR027417,NCBI_GP:CAL20896.1;Name=CAL20896.1;Note=Similar to Escherichia coli putative dethiobiotin synthetase YnfK SW:BID2_ECOLI (P77201) (231 aa) fasta scores: E(): 0%2C 63.2%25 id in 223 aa%2C to Escherichia coli dethiobiotin synthetase BioD SW:BIOD_ECOLI (P13000) (224 aa) fasta scores: E(): 0%2C 52.1%25 id in 219 aa and to Yersinia pestis YPO1154 (240 aa) fasta scores: E(): 0%2C50.7%25 identity in 227 aa overlap;gbkey=CDS;gene=bioD;product=putative dethiobiotin synthetase;protein_id=CAL20896.1;transl_table=11
AL590842.1	EMBL	gene	2552703	2553998	.	-	.	ID=gene2248;Name=YPO2270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2270
AL590842.1	EMBL	CDS	2552703	2553998	.	-	0	ID=cds2206;Parent=gene2248;Dbxref=GOA:Q8ZEB3,InterPro:IPR001807,InterPro:IPR014743,InterPro:IPR023790,NCBI_GP:CAL20897.1;Name=CAL20897.1;Note=Similar to Escherichia coli hypothetical protein TR:P76175 (EMBL:AE000255) (438 aa) fasta scores: E(): 0%2C61.8%25 id in 434 aa%2C and to Vibrio cholerae hypothetical protein VCA0526 TR:Q9KM62 (EMBL:AE004383) (468 aa) fasta scores: E(): 5e-21%2C 28.1%25 id in 420 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004383;product=putative membrane protein;protein_id=CAL20897.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2552727	2552792	.	-	.	ID=id5321;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2552730	2553644	.	-	.	ID=id5322;Note=Pfam match to entry PF00654 voltage_CLC%2C Voltage gated chloride channels%2C score 122.00%2C E-value 2.7e-35;gbkey=misc_feature;inference=protein motif:PF00654
AL590842.1	EMBL	sequence_feature	2552814	2552879	.	-	.	ID=id5323;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2552925	2552990	.	-	.	ID=id5324;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2553012	2553077	.	-	.	ID=id5325;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2553123	2553188	.	-	.	ID=id5326;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2553228	2553293	.	-	.	ID=id5327;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2553354	2553419	.	-	.	ID=id5328;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2553441	2553506	.	-	.	ID=id5329;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2553552	2553617	.	-	.	ID=id5330;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2553735	2553800	.	-	.	ID=id5331;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2553870	2553935	.	-	.	ID=id5332;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	TANDEM	2554162	2562920	.	+	.	ID=id5333;Note=prophage: some shotgun sequence suggests it could also exist as a tandem repeat%2C or as a circular intermediate;gbkey=repeat_region;rpt_type=TANDEM
AL590842.1	EMBL	stem_loop	2554184	2554243	.	+	.	ID=id5334;gbkey=stem_loop
AL590842.1	EMBL	gene	2554373	2554636	.	-	.	ID=gene2249;Name=YPO2271;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2271
AL590842.1	EMBL	CDS	2554373	2554636	.	-	0	ID=cds2207;Parent=gene2249;Dbxref=UniProtKB/TrEMBL:Q0WEQ1,NCBI_GP:CAL20898.1;Name=CAL20898.1;Note=Similar to the C-terminal region of Pyrococcus horikoshii hypothetical protein PH1340 TR:O59065 (EMBL:AP000006) (120 aa) fasta scores: E(): 0.74%2C 30.7%25 id in 88 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP000006;product=phage hypothetical protein;protein_id=CAL20898.1;transl_table=11
AL590842.1	EMBL	gene	2554658	2555065	.	-	.	ID=gene2250;Name=YPO2272;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2272
AL590842.1	EMBL	CDS	2554658	2555065	.	-	0	ID=cds2208;Parent=gene2250;Dbxref=UniProtKB/TrEMBL:Q0WEQ0,NCBI_GP:CAL20899.1;Name=CAL20899.1;Note=No significant database matches;gbkey=CDS;product=phage hypothetical protein;protein_id=CAL20899.1;transl_table=11
AL590842.1	EMBL	gene	2555162	2555584	.	-	.	ID=gene2251;Name=YPO2273;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2273
AL590842.1	EMBL	CDS	2555162	2555584	.	-	0	ID=cds2209;Parent=gene2251;Dbxref=GOA:Q0WEP9,InterPro:IPR001387,InterPro:IPR010982,UniProtKB/TrEMBL:Q0WEP9,NCBI_GP:CAL20900.1;Name=CAL20900.1;Note=No significant database matches to the full length CDS. N-terminus is similar to an internal region of Vibrio cholerae pTLC plasmid protein TlcR TR:O85209 (EMBL:AF052650) (122 aa) fasta scores: E(): 1.3e-07%2C42.683%25 id in 82 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF052650;product=phage hypothetical protein;protein_id=CAL20900.1;transl_table=11
AL590842.1	EMBL	gene	2555780	2556832	.	+	.	ID=gene2252;Name=YPO2274;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2274
AL590842.1	EMBL	CDS	2555780	2556832	.	+	0	ID=cds2210;Parent=gene2252;Dbxref=GOA:Q0WEP8,InterPro:IPR006516,InterPro:IPR022686,InterPro:IPR022688,UniProtKB/TrEMBL:Q0WEP8,NCBI_GP:CAL20901.1;Name=CAL20901.1;Note=Similar to bacteriophage I2-2 gene II protein [contains: gene X protein] II and X SW:VG2_BPI22 (P15419) (344 aa) fasta scores: E(): 0%2C 58.1%25 id in 344 aa%2C and to Moraxella sp TA144 plasmid pTA144 Up putative rolling circle replication protein RepC TR:O69606 (EMBL:AJ224743) (336 aa) fasta scores: E(): 0%2C 37.0%25 id in 343 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ224743;product=putative phage protein;protein_id=CAL20901.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2556831	2556836	.	+	.	ID=id5335;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2556844	2557161	.	+	.	ID=gene2253;Name=YPO2275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2275
AL590842.1	EMBL	CDS	2556844	2557161	.	+	0	ID=cds2211;Parent=gene2253;Dbxref=UniProtKB/TrEMBL:Q0WEP7,NCBI_GP:CAL20902.1;Name=CAL20902.1;Note=Similar to bacteriophage I2-2 helix-destabilizing protein V SW:VHED_BPI22 (P15417) (108 aa) fasta scores: E(): 8.5e-16%2C 43.0%25 id in 100 aa;gbkey=CDS;product=putative phage protein;protein_id=CAL20902.1;transl_table=11
AL590842.1	EMBL	gene	2557164	2557415	.	+	.	ID=gene2254;Name=YPO2276;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2276
AL590842.1	EMBL	CDS	2557164	2557415	.	+	0	ID=cds2212;Parent=gene2254;Dbxref=UniProtKB/TrEMBL:Q0WEP6,NCBI_GP:CAL20903.1;Name=CAL20903.1;Note=No significant database matches;gbkey=CDS;product=putative phage-related membrane protein;protein_id=CAL20903.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2557326	2557394	.	+	.	ID=id5336;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2557412	2557684	.	+	.	ID=gene2255;Name=YPO2276a;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2276a
AL590842.1	EMBL	CDS	2557412	2557684	.	+	0	ID=cds2213;Parent=gene2255;Dbxref=UniProtKB/TrEMBL:Q0WEP5,NCBI_GP:CAL20904.1;Name=CAL20904.1;Note=No significant database matches;gbkey=CDS;product=putative phage-related membrane protein;protein_id=CAL20904.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2557737	2557740	.	+	.	ID=id5337;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2557749	2559461	.	+	.	ID=gene2256;Name=YPO2277;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2277
AL590842.1	EMBL	CDS	2557749	2559461	.	+	0	ID=cds2214;Parent=gene2256;Dbxref=UniProtKB/TrEMBL:Q0WEP4,NCBI_GP:CAL20905.1;Name=CAL20905.1;Note=No significant database matches;gbkey=CDS;product=phage hypothetical protein;protein_id=CAL20905.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2559460	2559466	.	+	.	ID=id5338;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2559474	2559761	.	+	.	ID=gene2257;Name=YPO2278;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2278
AL590842.1	EMBL	CDS	2559474	2559761	.	+	0	ID=cds2215;Parent=gene2257;Dbxref=InterPro:IPR019670,UniProtKB/TrEMBL:Q0WEP3,NCBI_GP:CAL20906.1;Name=CAL20906.1;Note=Similar to Vibrio cholerae O139 fs1 phage hypothetical protein TR:O56838 (EMBL:D89074) (104 aa) fasta scores: E(): 0.52%2C 28.1%25 id in 96 aa;gbkey=CDS;inference=similar to sequence:INSDC:D89074;product=putative phage-related membrane protein;protein_id=CAL20906.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2559531	2559599	.	+	.	ID=id5339;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2559657	2559725	.	+	.	ID=id5340;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2559765	2560790	.	+	.	ID=gene2258;Name=YPO2279;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2279
AL590842.1	EMBL	CDS	2559765	2560790	.	+	0	ID=cds2216;Parent=gene2258;Dbxref=InterPro:IPR008900,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WEP2,NCBI_GP:CAL20907.1;Name=CAL20907.1;Note=N-terminal region is similar to the N-terminus of bacteriophage phi-Lf protein I TR:O55247 (EMBL:AF018286) (440 aa) fasta scores: E(): 9.7e-15%2C 28.4%25 id in 306 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF018286;product=putative phage-related membrane protein;protein_id=CAL20907.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2559786	2559809	.	+	.	ID=id5341;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	2560416	2560484	.	+	.	ID=id5342;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2560790	2562034	.	+	.	ID=gene2259;Name=YPO2280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2280
AL590842.1	EMBL	CDS	2560790	2562034	.	+	0	ID=cds2217;Parent=gene2259;Dbxref=GOA:Q0WEP1,InterPro:IPR004846,UniProtKB/TrEMBL:Q0WEP1,NCBI_GP:CAL20908.1;Name=CAL20908.1;Note=Similar to internal region of Vibrio cholerae filamentous bacteriophage fs-2 hypothetical protein TR:O80264 (EMBL:AB002632) (500 aa) fasta scores: E(): 4e-10%2C 23.0%25 id in 369 aa;gbkey=CDS;inference=similar to sequence:INSDC:AB002632;product=putative phage-related secreted protein;protein_id=CAL20908.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2560802	2560834	.	+	.	ID=id5343;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	2560982	2561968	.	+	.	ID=id5344;Note=Pfam match to entry PF00263 Bac_GSPproteins%2CBacterial type II secretion system protein%2C score -85.90%2CE-value 1.2e-05;gbkey=misc_feature;inference=protein motif:PF00263
AL590842.1	EMBL	gene	2562517	2562765	.	+	.	ID=gene2260;Name=YPO2281;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2281
AL590842.1	EMBL	CDS	2562517	2562765	.	+	0	ID=cds2218;Parent=gene2260;Dbxref=UniProtKB/TrEMBL:Q0WEP0,NCBI_GP:CAL20909.1;Name=CAL20909.1;Note=No significant database matches;gbkey=CDS;product=phage hypothetical protein;protein_id=CAL20909.1;transl_table=11
AL590842.1	EMBL	gene	2563093	2563203	.	-	.	ID=gene2261;Name=YPO2282;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2282
AL590842.1	EMBL	CDS	2563093	2563203	.	-	0	ID=cds2219;Parent=gene2261;Dbxref=UniProtKB/TrEMBL:Q0WEN9,NCBI_GP:CAL20910.1;Name=CAL20910.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20910.1;transl_table=11
AL590842.1	EMBL	gene	2563325	2564341	.	-	.	ID=gene2262;Name=YPO2283;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2283
AL590842.1	EMBL	CDS	2563325	2564341	.	-	0	ID=cds2220;Parent=gene2262;Dbxref=GOA:Q7CIJ7,InterPro:IPR000843,InterPro:IPR010982,InterPro:IPR028082,UniProtKB/TrEMBL:Q7CIJ7,NCBI_GP:CAL20911.1;Name=CAL20911.1;Note=Similar to Escherichia coli galactose operon repressor GalR SW:GALR_ECOLI (P03024) (343 aa) fasta scores: E(): 0%2C 44.1%25 id in 333 aa%2C and to Vibrio cholerae LacI family transcriptional regulator VC2337 TR:Q9KPM9 (EMBL:AE004303) (335 aa) fasta scores: E(): 0%2C 44.1%25 id in 333 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004303;product=putative LacI-family transcriptional regulatory protein;protein_id=CAL20911.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2563445	2564170	.	-	.	ID=id5345;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 99.80%2C E-value 5.4e-26;gbkey=misc_feature;inference=protein motif:PF00532
AL590842.1	EMBL	sequence_feature	2564261	2564341	.	-	.	ID=id5346;Note=Pfam match to entry PF00356 lacI%2C Bacterial regulatory proteins%2C lacI family%2C score 47.70%2C E-value 4.4e-12;gbkey=misc_feature;inference=protein motif:PF00356
AL590842.1	EMBL	sequence_feature	2564273	2564338	.	-	.	ID=id5347;Note=Predicted helix-turn-helix motif with score 1855 (+5.50 SD) at aa 2-23%2C sequence ATMKDVALRAGVSVATVSRVLN;gbkey=misc_feature
AL590842.1	EMBL	sequence_feature	2564276	2564332	.	-	.	ID=id5348;Note=PS00356 Bacterial regulatory proteins%2C lacI family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00356
AL590842.1	EMBL	gene	2564405	2564878	.	-	.	ID=gene2263;Name=YPO2284;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2284
AL590842.1	EMBL	CDS	2564405	2564878	.	-	0	ID=cds2221;Parent=gene2263;Dbxref=UniProtKB/TrEMBL:Q7CIJ6,NCBI_GP:CAL20912.1;Name=CAL20912.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20912.1;transl_table=11
AL590842.1	EMBL	gene	2565022	2565645	.	-	.	ID=gene2264;Name=YPO2285;end_range=2565645,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2285;partial=true;start_range=.,2565022
AL590842.1	EMBL	CDS	2565022	2565645	.	-	0	ID=cds2222;Parent=gene2264;Dbxref=InterPro:IPR025997,InterPro:IPR028082,UniProtKB/TrEMBL:Q0WEN6,NCBI_GP:CAL20913.1;Name=CAL20913.1;Note=Similar to the C-terminal regions of Escherichia coli D-ribose-binding periplasmic protein precursor RbsB SW:RBSB_ECOLI (P02925) (296 aa) fasta scores: E(): 7.4e-15%2C35.359%25 id in 181 aa%2C and Rhizobium loti ribose ABC transporter%2C periplasmic ribose-binding protein MLL7014 TR:BAB53199 (EMBL:AP003010) (313 aa) fasta scores: E(): 1e-34%2C 53.266%25 id in 199 aa. The CDS appears to be truncated at the N-terminus%2C identity with other proteins extends upstream of the start codon. Probable gene remnant%3B~was marked partial;end_range=2565645,.;gbkey=CDS;inference=similar to sequence:INSDC:AP003010;partial=true;product=putative ribose-binding periplasmic protein (partial);protein_id=CAL20913.1;start_range=.,2565022;transl_table=11
AL590842.1	EMBL	gene	2565808	2566839	.	+	.	ID=gene2265;Name=YPO2286;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2286
AL590842.1	EMBL	CDS	2565808	2566839	.	+	0	ID=cds2223;Parent=gene2265;Dbxref=UniProtKB/TrEMBL:Q7CIJ5,NCBI_GP:CAL20914.1;Name=CAL20914.1;Note=Similar to Deinococcus radiodurans putative ABC transporter%2C periplasmic substrate-binding protein DR1655 TR:Q9RTV1 (EMBL:AE002008) (337 aa) fasta scores: E(): 2e-09%2C 25.915%25 id in 328 aa%2C and to Escherichia coli putative aliphatic sulfonates binding protein precursor SsuA SW:SSUA_ECOLI (P75853) (319 aa) fasta scores: E(): 3.5e-07%2C 31.343%25 id in 201 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE002008;product=conserved hypothetical protein;protein_id=CAL20914.1;transl_table=11
AL590842.1	EMBL	gene	2566843	2567664	.	+	.	ID=gene2266;Name=YPO2287;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2287
AL590842.1	EMBL	CDS	2566843	2567664	.	+	0	ID=cds2224;Parent=gene2266;Dbxref=GOA:Q7CIJ4,InterPro:IPR000515,UniProtKB/TrEMBL:Q7CIJ4,NCBI_GP:CAL20915.1;Name=CAL20915.1;Note=Similar to Escherichia coli taurine transport system permease protein TauC SW:TAUC_ECOLI (Q47539) (275 aa) fasta scores: E(): 9.6e-26%2C 33.1%25 id in 251 aa%2C and to Methanococcus jannaschii putative ABC transporter permease protein MJ0413 SW:Y413_METJA (Q57856) (267 aa) fasta scores: E(): 3.2e-30%2C 39.2%25 id in 268 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative transport system permease;protein_id=CAL20915.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2566876	2566944	.	+	.	ID=id5349;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2567083	2567151	.	+	.	ID=id5350;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2567188	2567256	.	+	.	ID=id5351;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2567269	2567337	.	+	.	ID=id5352;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2567323	2567538	.	+	.	ID=id5353;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 37.00%2C E-value 4.2e-07;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	2567446	2567514	.	+	.	ID=id5354;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2567557	2567610	.	+	.	ID=id5355;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2567955	2569595	.	-	.	ID=gene2267;Name=amn;gbkey=Gene;gene=amn;gene_biotype=protein_coding;locus_tag=YPO2288
AL590842.1	EMBL	CDS	2567955	2569595	.	-	0	ID=cds2225;Parent=gene2267;Dbxref=GOA:Q0WEN3,InterPro:IPR000845,InterPro:IPR011271,InterPro:IPR011633,InterPro:IPR018017,InterPro:IPR018953,UniProtKB/TrEMBL:Q0WEN3,NCBI_GP:CAL20916.1;Name=CAL20916.1;Note=Similar to Escherichia coli AMP nucleosidase Amn SW:AMN_ECOLI (P15272) (484 aa) fasta scores: E(): 0%2C 71.1%25 id in 491 aa%2C and to Pseudomonas aeruginosa AMP nucleosidase Amn TR:AAG07357 (EMBL:AE004815) (499 aa) fasta scores: E(): 0%2C 52.3%25 id in 465 aa;gbkey=CDS;gene=amn;inference=similar to sequence:INSDC:AE004815;product=putative AMP nucleosidase;protein_id=CAL20916.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2568180	2568887	.	-	.	ID=id5356;Note=Pfam match to entry PF01048 PNP_UDP_1%2C Phosphorylase family%2C score 293.60%2C E-value 2.5e-84;gbkey=misc_feature;gene=amn;inference=protein motif:PF01048
AL590842.1	EMBL	ribosome_entry_site	2569599	2569607	.	-	.	ID=id5357;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2569831	2571234	.	+	.	ID=gene2268;Name=YPO2289;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2289
AL590842.1	EMBL	CDS	2569831	2571234	.	+	0	ID=cds2226;Parent=gene2268;Dbxref=UniProtKB/TrEMBL:Q0WEN2,NCBI_GP:CAL20917.1;Name=CAL20917.1;Note=Similar to Salmonella typhimurium putative virulence factor SrfA TR:Q9KIK0 (EMBL:AF231758) (399 aa) fasta scores: E(): 8.5e-22%2C 40.0%25 id in 433 aa. Possible alternative translational start sites. SrfA has been shown to be regulated by the pathogenicity island SPI-2 transcriptional regulator SsrB%2C although it is not found within SPI-2;gbkey=CDS;inference=similar to sequence:INSDC:AF231758;product=putative virulence factor;protein_id=CAL20917.1;transl_table=11
AL590842.1	EMBL	gene	2571239	2574310	.	+	.	ID=gene2269;Name=YPO2290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2290
AL590842.1	EMBL	CDS	2571239	2574310	.	+	0	ID=cds2227;Parent=gene2269;Dbxref=InterPro:IPR009216,UniProtKB/TrEMBL:Q0WEN1,NCBI_GP:CAL20918.1;Name=CAL20918.1;Note=Similar to Salmonella typhimurium putative virulence factor SrfB TR:Q9KIJ9 (EMBL:AF231758) (993 aa) fasta scores: E(): 0%2C 56.5%25 id in 1028 aa. High content of glutamine and proline amino acid residues between codons 697 and 728. SrfB has been shown to be regulated by the pathogenicity island SPI-2 transcriptional regulator SsrB%2Calthough it is not found within SPI-2;gbkey=CDS;inference=similar to sequence:INSDC:AF231758;product=putative virulence factor;protein_id=CAL20918.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2572895	2572918	.	+	.	ID=id5358;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	repeat_region	2573327	2573422	.	+	.	ID=id5359;Note=repeat region with 4.6xGTCATCACAACGACAAT repeat.;gbkey=repeat_region
AL590842.1	EMBL	ribosome_entry_site	2574291	2574294	.	+	.	ID=id5360;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2574307	2576847	.	+	.	ID=gene2270;Name=YPO2291;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2291
AL590842.1	EMBL	CDS	2574307	2576847	.	+	0	ID=cds2228;Parent=gene2270;Dbxref=InterPro:IPR017030,UniProtKB/TrEMBL:Q74TR7,NCBI_GP:CAL20919.1;Name=CAL20919.1;Note=Similar to Salmonella typhimurium putative virulence factor SrfC TR:Q9KIJ8 (EMBL:AF231758) (714 aa) fasta scores: E(): 8.2e-06%2C 29.6%25 id in 817 aa. SrfC has been shown to be regulated by the pathogenicity island SPI-2 transcriptional regulator SsrB%2C although it is not found within SPI-2;gbkey=CDS;inference=similar to sequence:INSDC:AF231758;product=putative virulence factor;protein_id=CAL20919.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2574943	2575014	.	+	.	ID=id5361;Note=PS00334 Myb DNA-binding domain repeat signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00334
AL590842.1	EMBL	gene	2577016	2577810	.	-	.	ID=gene2271;Name=YPO2292;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2292
AL590842.1	EMBL	CDS	2577016	2577810	.	-	0	ID=cds2229;Parent=gene2271;Dbxref=InterPro:IPR010846,InterPro:IPR023360,UniProtKB/TrEMBL:Q0WEM9,NCBI_GP:CAL20920.1;Name=CAL20920.1;Note=Similar to Vibrio cholerae hypothetical protein VC1330 TR:Q9KSC8 (EMBL:AE004213) (275 aa) fasta scores: E(): 0%2C 41.6%25 id in 262 aa%2C and to Pseudomonas syringae (pv. tomato) hypothetical protein TR:Q9L6W6 (EMBL:AF232004) (241 aa) fasta scores: E(): 0%2C 45.3%25 id in 234 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF232004;product=putative lipoprotein;protein_id=CAL20920.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2577763	2577795	.	-	.	ID=id5362;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	ribosome_entry_site	2577817	2577820	.	-	.	ID=id5363;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2578383	2580065	.	+	.	ID=gene2272;Name=ilvB;gbkey=Gene;gene=ilvB;gene_biotype=protein_coding;locus_tag=YPO2293
AL590842.1	EMBL	CDS	2578383	2580065	.	+	0	ID=cds2230;Parent=gene2272;Dbxref=GOA:Q7CIJ3,InterPro:IPR000399,InterPro:IPR011766,InterPro:IPR012000,InterPro:IPR012001,InterPro:IPR012846,InterPro:IPR029035,InterPro:IPR029061,UniProtKB/TrEMBL:Q7CIJ3,NCBI_GP:CAL20921.1;Name=CAL20921.1;Note=Similar to Escherichia coli acetolactate synthase isozyme I large subunit IlvB SW:ILVB_ECOLI (P08142) (562 aa) fasta scores: E(): 0%2C 69.7%25 id in 554 aa%2C and to Citrobacter freundii valine-sensitive acetohydroxy acid synthase TR:P94783 (EMBL:D89674) (561 aa) fasta scores: E(): 0%2C 68.5%25 id in 558 aa;gbkey=CDS;gene=ilvB;inference=similar to sequence:INSDC:D89674;product=putative acetolactate synthase large subunit;protein_id=CAL20921.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2578434	2579987	.	+	.	ID=id5364;Note=Pfam match to entry PF00205 TPP_enzymes%2C Thiamine pyrophosphate enzymes%2C score 803.60%2C E-value 3.3e-249;gbkey=misc_feature;gene=ilvB;inference=protein motif:PF00205
AL590842.1	EMBL	sequence_feature	2579652	2579711	.	+	.	ID=id5365;Note=PS00187 Thiamine pyrophosphate enzymes signature.;gbkey=misc_feature;gene=ilvB;inference=protein motif:ProSite:PS00187
AL590842.1	EMBL	ribosome_entry_site	2580054	2580058	.	+	.	ID=id5366;gbkey=regulatory;gene=ilvB;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2580067	2580369	.	+	.	ID=gene2273;Name=ilvN;gbkey=Gene;gene=ilvN;gene_biotype=protein_coding;locus_tag=YPO2294
AL590842.1	EMBL	CDS	2580067	2580369	.	+	0	ID=cds2231;Parent=gene2273;Dbxref=GOA:Q0WEM7,InterPro:IPR002912,UniProtKB/TrEMBL:Q0WEM7,NCBI_GP:CAL20922.1;Name=CAL20922.1;Note=Similar to Escherichia coli acetolactate synthase isozyme I small subunit IlvN SW:ILVN_ECOLI (P08143) (96 aa) fasta scores: E(): 5.6e-19%2C 61.4%25 id in 83 aa%2C and to Salmonella typhimurium acetolactate synthase isozyme III small subunit IlvH SW:ILVH_SALTY (P21622) (163 aa) fasta scores: E(): 5.8e-06%2C 36.8%25 id in 76 aa;gbkey=CDS;gene=ilvN;product=putative acetolactate synthase small subunit;protein_id=CAL20922.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2580094	2580312	.	+	.	ID=id5367;Note=Pfam match to entry PF01842 ACT%2C ACT domain%2C score 49.50%2C E-value 7.7e-11;gbkey=misc_feature;gene=ilvN;inference=protein motif:PF01842
AL590842.1	EMBL	gene	2580436	2581110	.	-	.	ID=gene2274;Name=YPO2295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2295
AL590842.1	EMBL	CDS	2580436	2581110	.	-	0	ID=cds2232;Parent=gene2274;Dbxref=GOA:Q7CIJ2,InterPro:IPR006439,InterPro:IPR011951,InterPro:IPR023198,InterPro:IPR023214,UniProtKB/TrEMBL:Q7CIJ2,NCBI_GP:CAL20923.1;Name=CAL20923.1;Note=Similar to Vibrio cholerae hypothetical protein VCA0608 TR:Q9KLY3 (EMBL:AE004391) (224 aa) fasta scores: E(): 0%2C 62.9%25 id in 224 aa%3B~Similar to Vibrio cholerae hypothetical protein VCA0608 TR:Q9KLY3 (EMBL:AE004391) (224 aa) fasta scores: E(): 0%2C 62.9%25 id in 224 aa%2C and to Escherichia coli hypothetical protein YjjG SW:YJJG_ECOLI (P33999) (225 aa) fasta scores: E(): 0%2C 56.8%25 id in 222 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004391;product=haloacid dehalogenase-like hydrolase family protein;protein_id=CAL20923.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2580517	2581104	.	-	.	ID=id5368;Note=Pfam match to entry PF00702 Hydrolase%2C haloacid dehalogenase-like hydrolase%2C score 127.50%2C E-value 2.5e-34;gbkey=misc_feature;inference=protein motif:PF00702
AL590842.1	EMBL	sequence_feature	2580559	2580600	.	-	.	ID=id5369;Note=PS00761 Signal peptidases I signature 3.;gbkey=misc_feature;inference=protein motif:ProSite:PS00761
AL590842.1	EMBL	gene	2581241	2582626	.	-	.	ID=gene2275;Name=YPO2296;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2296
AL590842.1	EMBL	CDS	2581241	2582626	.	-	0	ID=cds2233;Parent=gene2275;Dbxref=InterPro:IPR028932,InterPro:IPR029024,UniProtKB/TrEMBL:Q0WEM5,NCBI_GP:CAL20924.1;Name=CAL20924.1;Note=No significant database matches to the full length CDS. Internal regions of the CDS are weakly similar to Pseudomonas aeruginosa hypothetical protein PA2260 TR:AAG05648 (EMBL:AE004652) (260 aa) fasta scores: E(): 0.25%2C 27.2%25 id in 265 aa%2C and the N-terminal region of Mus musculus ETS family transcription factor Elf2 TR:Q9JHC8 (EMBL:AF256218) (521 aa) fasta scores: E(): 3.9%2C 23.2%25 id in 246 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF256218;product=hypothetical protein;protein_id=CAL20924.1;transl_table=11
AL590842.1	EMBL	gene	2582626	2583636	.	-	.	ID=gene2276;Name=YPO2297;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2297
AL590842.1	EMBL	CDS	2582626	2583636	.	-	0	ID=cds2234;Parent=gene2276;Dbxref=InterPro:IPR025266,UniProtKB/TrEMBL:Q0WEM4,NCBI_GP:CAL20925.1;Name=CAL20925.1;Note=No significant database hits;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL20925.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2583505	2583549	.	-	.	ID=id5370;Note=2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2584182	2585627	.	-	.	ID=gene2277;Name=phoA;gbkey=Gene;gene=phoA;gene_biotype=protein_coding;locus_tag=YPO2298
AL590842.1	EMBL	CDS	2584182	2585627	.	-	0	ID=cds2235;Parent=gene2277;Dbxref=GOA:Q0WEM3,InterPro:IPR001952,InterPro:IPR017849,InterPro:IPR017850,InterPro:IPR018299,UniProtKB/TrEMBL:Q0WEM3,NCBI_GP:CAL20926.1;Name=CAL20926.1;Note=Similar to Serratia marcescens alkaline phosphatase precursor PhoA SW:PPB_SERMA (P19147) (475 aa) fasta scores: E(): 0%2C 77.1%25 id in 472 aa%2C and to Escherichia coli alkaline phosphatase PhoA TR:Q47487 (EMBL:M29668) (471 aa) fasta scores: E(): 0%2C 74.6%25 id in 468 aa. Contains a 2x SGIALS repeat between codons 18 and 29.;gbkey=CDS;gene=phoA;inference=similar to sequence:INSDC:M29668;product=alkaline phosphatase precursor;protein_id=CAL20926.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2584188	2585513	.	-	.	ID=id5371;Note=Pfam match to entry PF00245 alk_phosphatase%2CAlkaline phosphatase%2C score 723.20%2C E-value 1.2e-213;gbkey=misc_feature;gene=phoA;inference=protein motif:PF00245
AL590842.1	EMBL	sequence_feature	2585211	2585237	.	-	.	ID=id5372;Note=PS00123 Alkaline phosphatase active site.;gbkey=misc_feature;gene=phoA;inference=protein motif:ProSite:PS00123
AL590842.1	EMBL	repeat_region	2585572	2585607	.	-	.	ID=id5373;Note=repeat region containing 2xGATAATGCTATGCCGGAT repeats.;gbkey=repeat_region;gene=phoA
AL590842.1	EMBL	ribosome_entry_site	2585860	2585863	.	+	.	ID=id5374;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2585868	2586386	.	+	.	ID=gene2278;Name=ogt;gbkey=Gene;gene=ogt;gene_biotype=protein_coding;locus_tag=YPO2299
AL590842.1	EMBL	CDS	2585868	2586386	.	+	0	ID=cds2236;Parent=gene2278;Dbxref=GOA:Q7CIJ1,InterPro:IPR001497,InterPro:IPR008332,InterPro:IPR011991,InterPro:IPR014048,InterPro:IPR023546,UniProtKB/TrEMBL:Q7CIJ1,NCBI_GP:CAL20927.1;Name=CAL20927.1;Note=Similar to Escherichia coli methylated-DNA--protein-cysteine methyltransferase Ogt SW:OGT_ECOLI (P09168) (171 aa) fasta scores: E(): 0%2C 57.1%25 id in 170 aa%2C and to Salmonella typhimurium methylated-DNA--protein-cysteine methyltransferase Ogt SW:OGT_SALTY (P37429) (171 aa) fasta scores: E(): 0%2C 57.6%25 id in 170 aa;gbkey=CDS;gene=ogt;product=putative methylated-DNA--protein-cysteine methyltransferase;protein_id=CAL20927.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2586045	2586380	.	+	.	ID=id5375;Note=Pfam match to entry PF01035 Methyltransf_1%2C6-O-methylguanine DNA methyltransferase%2C score 216.70%2CE-value 3.4e-61;gbkey=misc_feature;gene=ogt;inference=protein motif:PF01035
AL590842.1	EMBL	sequence_feature	2586276	2586296	.	+	.	ID=id5376;Note=PS00374 Methylated-DNA--protein-cysteine methyltransferase active site.;gbkey=misc_feature;gene=ogt;inference=protein motif:ProSite:PS00374
AL590842.1	EMBL	gene	2586459	2587211	.	+	.	ID=gene2279;Name=fnr;gbkey=Gene;gene=fnr;gene_biotype=protein_coding;gene_synonym=nirR;locus_tag=YPO2300
AL590842.1	EMBL	CDS	2586459	2587211	.	+	0	ID=cds2237;Parent=gene2279;Dbxref=GOA:Q8ZE82,InterPro:IPR000595,InterPro:IPR001808,InterPro:IPR011991,InterPro:IPR012318,InterPro:IPR014710,InterPro:IPR018335,InterPro:IPR018490,NCBI_GP:CAL20928.1;Name=CAL20928.1;Note=Similar to Escherichia coli fumarate and nitrate reduction regulatory protein Fnr SW:FNR_ECOLI (P03019) (250 aa) fasta scores: E(): 0%2C 92.7%25 id in 247 aa%2C and to Shigella dysenteriae fumarate and nitrate reduction regulatory protein Fnr TR:Q9LA24 (EMBL:AF153317) (264 aa) fasta scores: E(): 0%2C 92.7%25 id in 247 aa;gbkey=CDS;gene=fnr;inference=similar to sequence:INSDC:AF153317;product=fumarate and nitrate reduction regulatory protein;protein_id=CAL20928.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2586594	2586872	.	+	.	ID=id5377;Note=Pfam match to entry PF00027 cNMP_binding%2C Cyclic nucleotide-binding domain%2C score 79.20%2C E-value 8.5e-20;gbkey=misc_feature;gene=fnr;inference=protein motif:PF00027
AL590842.1	EMBL	sequence_feature	2587035	2587130	.	+	.	ID=id5378;Note=Pfam match to entry PF00325 crp%2C Bacterial regulatory proteins%2C crp family%2C score 54.50%2C E-value 1.5e-16;gbkey=misc_feature;gene=fnr;inference=protein motif:PF00325
AL590842.1	EMBL	sequence_feature	2587041	2587112	.	+	.	ID=id5379;Note=PS00042 Bacterial regulatory proteins%2C crp family signature.;gbkey=misc_feature;gene=fnr;inference=protein motif:ProSite:PS00042
AL590842.1	EMBL	sequence_feature	2587041	2587106	.	+	.	ID=id5380;Note=Predicted helix-turn-helix motif with score 1841 (+5.46 SD) at aa 195-216%2C sequence MTRGDIGNYLGLTVETISRLLG;gbkey=misc_feature;gene=fnr
AL590842.1	EMBL	ribosome_entry_site	2587335	2587341	.	+	.	ID=id5381;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2587346	2588302	.	+	.	ID=gene2280;Name=YPO2301;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2301
AL590842.1	EMBL	CDS	2587346	2588302	.	+	0	ID=cds2238;Parent=gene2280;Dbxref=GOA:Q8ZE81,InterPro:IPR006016,InterPro:IPR014729,NCBI_GP:CAL20929.1;Name=CAL20929.1;Note=Similar to Escherichia coli hypothetical protein YdaA SW:YDAA_ECOLI (P03807) (315 aa) fasta scores: E(): 0%2C77.3%25 id in 313 aa%2C and to Vibrio cholerae hypothetical protein VC1433 vc1433 TR:Q9KS28 (EMBL:AE004222) (315 aa) fasta scores: E(): 0%2C 55.6%25 id in 311 aa%3B~Similar to Escherichia coli protein YdaA SW:YDAA_ECOLI (P03807) (315 aa) fasta scores: E(): 0%2C 77.3%25 id in 313 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004222;product=putative stress protein;protein_id=CAL20929.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2587442	2587780	.	+	.	ID=id5382;Note=Pfam match to entry PF00582 Usp%2C Universal stress protein family%2C score 31.80%2C E-value 1.6e-05;gbkey=misc_feature;inference=protein motif:PF00582
AL590842.1	EMBL	sequence_feature	2587913	2588242	.	+	.	ID=id5383;Note=Pfam match to entry PF00582 Usp%2C Universal stress protein family%2C score 79.70%2C E-value 6e-20;gbkey=misc_feature;inference=protein motif:PF00582
AL590842.1	EMBL	gene	2588577	2589971	.	-	.	ID=gene2281;Name=pntB;gbkey=Gene;gene=pntB;gene_biotype=protein_coding;locus_tag=YPO2302
AL590842.1	EMBL	CDS	2588577	2589971	.	-	0	ID=cds2239;Parent=gene2281;Dbxref=GOA:Q7CIJ0,InterPro:IPR012136,InterPro:IPR029035,UniProtKB/TrEMBL:Q7CIJ0,NCBI_GP:CAL20930.1;Name=CAL20930.1;Note=Similar to Escherichia coli NAD(P) transhydrogenase beta subunit protein PntB SW:PNTB_ECOLI (P07002) (462 aa) fasta scores: E(): 0%2C 85.9%25 id in 462 aa%2C and to Vibrio cholerae NAD(P) transhydrogenase%2C beta subunit protein VCA0564 TR:Q9KM25 (EMBL:AE004387) (458 aa) fasta scores: E(): 0%2C 77.1%25 id in 462 aa;gbkey=CDS;gene=pntB;inference=similar to sequence:INSDC:AE004387;product=NAD(P) transhydrogenase subunit beta;protein_id=CAL20930.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2588586	2589962	.	-	.	ID=id5384;Note=Pfam match to entry PF02233 PNTB%2C NAD(P) transhydrogenase beta subunit%2C score 1119.50%2C E-value 0;gbkey=misc_feature;gene=pntB;inference=protein motif:PF02233
AL590842.1	EMBL	gene	2590044	2591570	.	-	.	ID=gene2282;Name=pntA;gbkey=Gene;gene=pntA;gene_biotype=protein_coding;locus_tag=YPO2303
AL590842.1	EMBL	CDS	2590044	2591570	.	-	0	ID=cds2240;Parent=gene2282;Dbxref=GOA:Q7CII9,InterPro:IPR007698,InterPro:IPR007886,InterPro:IPR008142,InterPro:IPR008143,InterPro:IPR016040,InterPro:IPR024605,InterPro:IPR026255,UniProtKB/TrEMBL:Q7CII9,NCBI_GP:CAL20931.1;Name=CAL20931.1;Note=Similar to Escherichia coli NAD(P) transhydrogenase alpha subunit protein PntA SW:PNTA_ECOLI (P07001) (510 aa) fasta scores: E(): 0%2C 85.5%25 id in 510 aa%2C and to Vibrio cholerae NAD(P) transhydrogenase alpha subunit protein VCA0563 TR:Q9KM26 (EMBL:AE004387) (512 aa) fasta scores: E(): 0%2C 75.6%25 id in 512 aa;gbkey=CDS;gene=pntA;inference=similar to sequence:INSDC:AE004387;product=NAD(P) transhydrogenase alpha subunit;protein_id=CAL20931.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2590413	2591570	.	-	.	ID=id5385;Note=Pfam match to entry PF01262 AlaDh_PNT%2C Alanine dehydrogenase/pyridine nucleotide transhydrogenase%2C score 810.00%2C E-value 8.4e-240;gbkey=misc_feature;gene=pntA;inference=protein motif:PF01262
AL590842.1	EMBL	sequence_feature	2590986	2591063	.	-	.	ID=id5386;Note=PS00837 Alanine dehydrogenase %26 pyridine nucleotide transhydrogenase signature 2.;gbkey=misc_feature;gene=pntA;inference=protein motif:ProSite:PS00837
AL590842.1	EMBL	sequence_feature	2591481	2591561	.	-	.	ID=id5387;Note=PS00836 Alanine dehydrogenase %26 pyridine nucleotide transhydrogenase signature 1.;gbkey=misc_feature;gene=pntA;inference=protein motif:ProSite:PS00836
AL590842.1	EMBL	gene	2591691	2591894	.	-	.	ID=gene2283;Name=YPO2304;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2304
AL590842.1	EMBL	CDS	2591691	2591894	.	-	0	ID=cds2241;Parent=gene2283;Dbxref=UniProtKB/TrEMBL:Q74TQ7,NCBI_GP:CAL20932.1;Name=CAL20932.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20932.1;transl_table=11
AL590842.1	EMBL	gene	2592100	2593053	.	+	.	ID=gene2284;Name=YPO2305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2305
AL590842.1	EMBL	CDS	2592100	2593053	.	+	0	ID=cds2242;Parent=gene2284;Dbxref=InterPro:IPR010854,InterPro:IPR025539,InterPro:IPR025543,UniProtKB/TrEMBL:Q7CII8,NCBI_GP:CAL20933.1;Name=CAL20933.1;Note=Similar to Escherichia coli hypothetical protein YdgH SW:YDGH_ECOLI (P76177) (314 aa) fasta scores: E(): 0%2C70.0%25 id in 317 aa%2C and to Borrelia hermsii outer membrane lipoprotein 10 Vmp10 TR:P70900 (EMBL:U52037) (366 aa) fasta scores: E(): 1.3%2C 23.6%25 id in 292 aa;gbkey=CDS;inference=similar to sequence:INSDC:U52037;product=putative exported protein;protein_id=CAL20933.1;transl_table=11
AL590842.1	EMBL	gene	2593323	2594714	.	+	.	ID=gene2285;Name=YPO2306;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2306
AL590842.1	EMBL	CDS	2593323	2594714	.	+	0	ID=cds2243;Parent=gene2285;Dbxref=GOA:Q7CII7,InterPro:IPR002293,InterPro:IPR004754,UniProtKB/TrEMBL:Q7CII7,NCBI_GP:CAL20934.1;Name=CAL20934.1;Note=Similar to Pseudomonas aeruginosa arginine/ornithine antiporter ArcD SW:ARCD_PSEAE (P18275) (482 aa) fasta scores: E(): 0%2C 44.3%25 id in 476 aa%2C and to Escherichia coli putative arginine/ornithine antiporter YdgI SW:ARCD_ECOLI (P77429) (460 aa) fasta scores: E(): 0%2C 74.9%25 id in 462 aa;gbkey=CDS;product=putative amino acid antiporter;protein_id=CAL20934.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2593323	2594612	.	+	.	ID=id5388;Note=Pfam match to entry PF00324 aa_permeases%2C Amino acid permease%2C score -261.70%2C E-value 0.0056;gbkey=misc_feature;inference=protein motif:PF00324
AL590842.1	EMBL	gene	2594738	2595154	.	-	.	ID=gene2286;Name=YPO2307;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2307
AL590842.1	EMBL	CDS	2594738	2595154	.	-	0	ID=cds2244;Parent=gene2286;Dbxref=UniProtKB/TrEMBL:Q7CII6,NCBI_GP:CAL20935.1;Name=CAL20935.1;Note=Similar to Vibrio cholerae hypothetical protein VC1189 TR:Q9KSR7 (EMBL:AE004199) (140 aa) fasta scores: E(): 2.2e-16%2C 41.7%25 id in 127 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004199;product=conserved hypothetical protein;protein_id=CAL20935.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2595162	2595166	.	-	.	ID=id5389;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2595451	2596197	.	+	.	ID=gene2287;Name=rstA;gbkey=Gene;gene=rstA;gene_biotype=protein_coding;gene_synonym=urpT;locus_tag=YPO2308
AL590842.1	EMBL	CDS	2595451	2596197	.	+	0	ID=cds2245;Parent=gene2287;Dbxref=GOA:Q0WEL3,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:Q0WEL3,NCBI_GP:CAL20936.1;Name=CAL20936.1;Note=Similar to Escherichia coli transcriptional regulatory protein RstA SW:RSTA_ECOLI (P52108) (242 aa) fasta scores: E(): 0%2C 73.9%25 id in 245 aa%2C and to Bacillus subtilis alkaline phosphatase synthesis transcriptional regulatory protein PhoP SW:PHOP_BACSU (P13792) (240 aa) fasta scores: E(): 1.3e-20%2C 33.5%25 id in 239 aa;gbkey=CDS;gene=rstA;product=two-component regulatory system%2C response regulator protein;protein_id=CAL20936.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2595454	2595786	.	+	.	ID=id5390;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 84.00%2C E-value 3e-21;gbkey=misc_feature;gene=rstA;inference=protein motif:PF00072
AL590842.1	EMBL	sequence_feature	2595940	2596158	.	+	.	ID=id5391;Note=Pfam match to entry PF00486 trans_reg_C%2CTranscriptional regulatory protein%2C C terminal%2C score 69.80%2C E-value 1.6e-19;gbkey=misc_feature;gene=rstA;inference=protein motif:PF00486
AL590842.1	EMBL	gene	2596225	2597502	.	+	.	ID=gene2288;Name=rstB;gbkey=Gene;gene=rstB;gene_biotype=protein_coding;gene_synonym=uspT;locus_tag=YPO2309
AL590842.1	EMBL	CDS	2596225	2597502	.	+	0	ID=cds2246;Parent=gene2288;Dbxref=GOA:Q0WEL2,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,UniProtKB/TrEMBL:Q0WEL2,NCBI_GP:CAL20937.1;Name=CAL20937.1;Note=Similar to Escherichia coli sensor protein RstB SW:RSTB_ECOLI (P18392) (433 aa) fasta scores: E(): 0%2C 69.5%25 id in 419 aa%2C and to Escherichia coli sensor protein CpxA SW:CPXA_ECOLI (P08336) (457 aa) fasta scores: E(): 2.5e-27%2C28.4%25 id in 450 aa;gbkey=CDS;gene=rstB;inference=protein motif:TMHMM:2.0;product=two-component regulatory system%2C sensor kinase protein;protein_id=CAL20937.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2596609	2596818	.	+	.	ID=id5392;Note=Pfam match to entry PF00672 DUF5%2C HAMP domain%2C score 47.50%2C E-value 2.9e-10;gbkey=misc_feature;gene=rstB;inference=protein motif:PF00672
AL590842.1	EMBL	sequence_feature	2596612	2596665	.	+	.	ID=id5393;Note=2 probable transmembrane helices predicted;gbkey=misc_feature;gene=rstB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2596858	2597463	.	+	.	ID=id5394;Note=Pfam match to entry PF00512 signal%2C Histidine kinase%2C score 168.50%2C E-value 1.1e-46;gbkey=misc_feature;gene=rstB;inference=protein motif:PF00512
AL590842.1	EMBL	ribosome_entry_site	2597586	2597589	.	+	.	ID=id5395;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2597596	2599095	.	+	.	ID=gene2289;Name=YPO2310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2310
AL590842.1	EMBL	CDS	2597596	2599095	.	+	0	ID=cds2247;Parent=gene2289;Dbxref=GOA:Q7CII5,InterPro:IPR001333,UniProtKB/TrEMBL:Q7CII5,NCBI_GP:CAL20938.1;Name=CAL20938.1;Note=Similar to Vibrio cholerae thermostable carboxypeptidase 1 VC1414 TR:Q9KS46 (EMBL:AE004220) (524 aa) fasta scores: E(): 0%2C 55.5%25 id in 499 aa%2C and to Halobacterium sp probable carboxypeptidase Cxp TR:AAG20654 (EMBL:AE005134) (502 aa) fasta scores: E(): 0%2C 35.9%25 id in 499 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE005134;product=putative carboxypeptidase;protein_id=CAL20938.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2597596	2599089	.	+	.	ID=id5396;Note=Pfam match to entry PF02074 Peptidase_M32%2CCarboxypeptidase Taq (M32) metallopeptidase%2C score 476.30%2CE-value 2.4e-139;gbkey=misc_feature;inference=protein motif:PF02074
AL590842.1	EMBL	repeat_region	2599109	2599820	.	-	.	ID=id5397;Note=Contains a 'A' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	2599217	2599675	.	-	.	ID=gene2290;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO2311
AL590842.1	EMBL	CDS	2599217	2599675	.	-	0	ID=cds2248;Parent=gene2290;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL20939.1;Name=CAL20939.1;Note=Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA SW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL20939.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2599310	2599621	.	-	.	ID=id5398;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	ribosome_entry_site	2600633	2600638	.	+	.	ID=id5399;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2600645	2603269	.	+	.	ID=gene2291;Name=YPO2312;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2312
AL590842.1	EMBL	CDS	2600645	2603269	.	+	0	ID=cds2249;Parent=gene2291;Dbxref=GOA:Q7CIN8,InterPro:IPR005165,InterPro:IPR022385,UniProtKB/TrEMBL:Q7CIN8,NCBI_GP:CAL20940.1;Name=CAL20940.1;Note=Similar to Photorhabdus luminescens insecticidal toxin complex protein TccC TR:O85157 (EMBL:AF047028) (1043 aa) fasta scores: E(): 0%2C 60.4%25 id in 695 aa%2C and to Serratia entomophila plasmid pADAP virulence determinant SepC TR:AAG09644 (EMBL:AF135182) (973 aa) fasta scores: E(): 0%2C 62.2%25 id in 875 aa. Similar to YPO2380 (984 aa) fasta scores: E(): 0%2C 64.9%25 identity in 880 aa overlap%2CYPO3674 (1011 aa) fasta scores: E(): 0%2C 50.1%25 identity in 773 aa overlap%2C and to YPO3673 (952 aa) fasta scores: E(): 0%2C 52.1%25 identity in 729 aa overlap. Note the differing C-terminus of the product of this CDS and the G+C content -56%25;gbkey=CDS;inference=similar to sequence:INSDC:AF135182;product=putative insecticidal toxin complex;protein_id=CAL20940.1;transl_table=11
AL590842.1	EMBL	gene	2603272	2603628	.	+	.	ID=gene2292;Name=YPO2313;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2313
AL590842.1	EMBL	CDS	2603272	2603628	.	+	0	ID=cds2250;Parent=gene2292;Dbxref=GOA:Q7CIN9,UniProtKB/TrEMBL:Q7CIN9,NCBI_GP:CAL20941.1;Name=CAL20941.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20941.1;transl_table=11
AL590842.1	EMBL	gene	2603735	2603941	.	-	.	ID=gene2293;Name=YPO2314;end_range=2603941,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2314;partial=true;start_range=.,2603735
AL590842.1	EMBL	CDS	2603735	2603941	.	-	0	ID=cds2251;Parent=gene2293;Dbxref=GOA:Q0WEK7,InterPro:IPR002525,UniProtKB/TrEMBL:Q0WEK7,NCBI_GP:CAL20942.1;Name=CAL20942.1;Note=Similar to the N-terminal regions of Acinetobacter sp SE19 pilin gene inverting protein ChnY TR:Q9F7E1 (EMBL:AF282240) (324 aa) fasta scores: E(): 7.1e-06%2C38.806%25 id in 67 aa%2C and Neisseria meningitidis pilin gene inverting protein PivNM-2 TR:Q9JY46 (EMBL:AE002525) (316 aa) fasta scores: E(): 0.00013%2C 43.077%25 id in 65 aa. The CDS appears to be truncated at the C- and N-termini. Identity with other proteins extends upstream of the first available start codon%2C codon 18. Probable gene remnant%3B~was marked partial;end_range=2603941,.;gbkey=CDS;inference=similar to sequence:INSDC:AF282240;partial=true;product=putative invertase protein (partial);protein_id=CAL20942.1;start_range=.,2603735;transl_table=11
AL590842.1	EMBL	gene	2604455	2605033	.	-	.	ID=gene2294;Name=YPO2315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2315
AL590842.1	EMBL	CDS	2604455	2605033	.	-	0	ID=cds2252;Parent=gene2294;Dbxref=GOA:Q8ZE68,InterPro:IPR007372,InterPro:IPR023480,NCBI_GP:CAL20943.1;Name=CAL20943.1;Note=Similar to Escherichia coli hypothetical protein YceI SW:YCEI_ECOLI (P37904) (191 aa) fasta scores: E(): 0%2C78.5%25 id in 191 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0423 TR:AAG03812 (EMBL:AE004479) (191 aa) fasta scores: E(): 0%2C 77.4%25 id in 190 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004479;product=putative exported protein;protein_id=CAL20943.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2605042	2605045	.	-	.	ID=id5400;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2605059	2605613	.	-	.	ID=gene2295;Name=YPO2316;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2316
AL590842.1	EMBL	CDS	2605059	2605613	.	-	0	ID=cds2253;Parent=gene2295;Dbxref=GOA:Q74TP6,InterPro:IPR016174,UniProtKB/TrEMBL:Q74TP6,NCBI_GP:CAL20944.1;Name=CAL20944.1;Note=Similar to Escherichia coli cytochrome b561 homologue 2 YceJ SW:C56I_ECOLI (P75925) (188 aa) fasta scores: E(): 0%2C 62.6%25 id in 182 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0422 TR:AAG03811 (EMBL:AE004479) (189 aa) fasta scores: E(): 0%2C 59.3%25 id in 182 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004479;product=putative membrane protein;protein_id=CAL20944.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2605122	2605187	.	-	.	ID=id5401;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2605278	2605343	.	-	.	ID=id5402;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2605407	2605463	.	-	.	ID=id5403;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2605509	2605574	.	-	.	ID=id5404;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2606008	2606220	.	+	.	ID=gene2296;Name=YPO2317;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2317
AL590842.1	EMBL	CDS	2606008	2606220	.	+	0	ID=cds2254;Parent=gene2296;Dbxref=UniProtKB/TrEMBL:Q74TP5,NCBI_GP:CAL20945.1;Name=CAL20945.1;Note=No significant database hits. Doubtful CDS;gbkey=CDS;product=hypothetical protein;protein_id=CAL20945.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2606205	2606208	.	+	.	ID=id5405;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2606217	2606501	.	+	.	ID=gene2297;Name=asr;gbkey=Gene;gene=asr;gene_biotype=protein_coding;locus_tag=YPO2318
AL590842.1	EMBL	CDS	2606217	2606501	.	+	0	ID=cds2255;Parent=gene2297;Dbxref=GOA:Q8ZE65,NCBI_GP:CAL20946.1;Name=CAL20946.1;Note=Similar to Escherichia coli acid shock protein Asr SW:ASR_ECOLI (P36560) (111 aa) fasta scores: E(): 3.5e-08%2C50.0%25 id in 106 aa;gbkey=CDS;gene=asr;product=putative acid shock protein;protein_id=CAL20946.1;transl_table=11
AL590842.1	EMBL	gene	2606835	2607671	.	+	.	ID=gene2298;Name=YPO2319;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2319
AL590842.1	EMBL	CDS	2606835	2607671	.	+	0	ID=cds2256;Parent=gene2298;Dbxref=GOA:Q7CIP0,InterPro:IPR001254,InterPro:IPR001314,InterPro:IPR009003,InterPro:IPR018114,UniProtKB/TrEMBL:Q7CIP0,NCBI_GP:CAL20947.1;Name=CAL20947.1;Note=Similar to Escherichia coli putative protease YdgD TR:P76176 (EMBL:AE000255) (273 aa) fasta scores: E(): 0%2C62.4%25 id in 263 aa%2C and to the N-terminus of Homo sapiens chymotrypsin-like protease CTRL-1 SW:CTRL_HUMAN (P40313) (264 aa) fasta scores: E(): 0.00027%2C 23.1%25 id in 242 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE000255;product=putative pepetidase;protein_id=CAL20947.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2606955	2607089	.	+	.	ID=id5406;Note=Pfam match to entry PF00089 trypsin%2C Trypsin%2C score 15.20%2C E-value 0.00058;gbkey=misc_feature;inference=protein motif:PF00089
AL590842.1	EMBL	sequence_feature	2607069	2607086	.	+	.	ID=id5407;Note=PS00134 Serine proteases%2C trypsin family%2C histidine active site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00134
AL590842.1	EMBL	sequence_feature	2607480	2607515	.	+	.	ID=id5408;Note=PS00135 Serine proteases%2C trypsin family%2C serine active site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00135
AL590842.1	EMBL	gene	2607727	2608050	.	-	.	ID=gene2299;Name=YPO2320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2320
AL590842.1	EMBL	CDS	2607727	2608050	.	-	0	ID=cds2257;Parent=gene2299;Dbxref=GOA:Q7CIP1,InterPro:IPR001387,InterPro:IPR010982,UniProtKB/TrEMBL:Q7CIP1,NCBI_GP:CAL20948.1;Name=CAL20948.1;Note=Similar to bacteriophage N15 protein gp48 TR:O64356 (EMBL:AF064539) (95 aa) fasta scores: E(): 9.5e-06%2C 37.3%25 id in 83 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF064539;product=putative DNA-binding phage-related protein;protein_id=CAL20948.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2607763	2607927	.	-	.	ID=id5409;Note=Pfam match to entry PF01381 HTH_3%2C Helix-turn-helix%2Cscore 62.80%2C E-value 7.2e-15;gbkey=misc_feature;inference=protein motif:PF01381
AL590842.1	EMBL	sequence_feature	2607835	2607900	.	-	.	ID=id5410;Note=Predicted helix-turn-helix motif with score 1771 (+5.22 SD) at aa 51-72%2C sequence LTQEEVALRAGLKKQNISRMEK;gbkey=misc_feature
AL590842.1	EMBL	gene	2608047	2608361	.	-	.	ID=gene2300;Name=YPO2321;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2321
AL590842.1	EMBL	CDS	2608047	2608361	.	-	0	ID=cds2258;Parent=gene2300;Dbxref=InterPro:IPR009241,UniProtKB/TrEMBL:Q0WEK0,NCBI_GP:CAL20949.1;Name=CAL20949.1;Note=Similar to bacteriophage N15 protein gp49 TR:O64357 (EMBL:AF064539) (103 aa) fasta scores: E(): 6.3e-08%2C 36.2%25 id in 94 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF064539;product=putative phage protein;protein_id=CAL20949.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2608060	2608063	.	-	.	ID=id5411;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2608715	2612557	.	-	.	ID=gene2301;Name=hrpA;gbkey=Gene;gene=hrpA;gene_biotype=protein_coding;locus_tag=YPO2322
AL590842.1	EMBL	CDS	2608715	2612557	.	-	0	ID=cds2259;Parent=gene2301;Dbxref=GOA:Q0WEJ9,InterPro:IPR001650,InterPro:IPR003593,InterPro:IPR007502,InterPro:IPR010222,InterPro:IPR011545,InterPro:IPR011709,InterPro:IPR014001,InterPro:IPR024590,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WEJ9,NCBI_GP:CAL20950.1;Name=CAL20950.1;Note=Similar to Escherichia coli ATP-dependent helicase HrpA SW:HRPA_ECOLI (P43329) (1281 aa) fasta scores: E(): 0%2C81.9%25 id in 1280 aa%2C and to Vibrio cholerae ATP-dependent helicase HrpA TR:Q9KS77 (EMBL:AE004217) (1309 aa) fasta scores: E(): 0%2C 70.7%25 id in 1278 aa;gbkey=CDS;gene=hrpA;inference=similar to sequence:INSDC:AE004217;product=ATP-dependent helicase;protein_id=CAL20950.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2611403	2611702	.	-	.	ID=id5412;Note=Pfam match to entry PF00271 helicase_C%2C Helicases conserved C-terminal domain%2C score 16.00%2C E-value 0.0039;gbkey=misc_feature;gene=hrpA;inference=protein motif:PF00271
AL590842.1	EMBL	sequence_feature	2612294	2612317	.	-	.	ID=id5413;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=hrpA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2613025	2613630	.	+	.	ID=gene2302;Name=acpD;gbkey=Gene;gene=acpD;gene_biotype=protein_coding;locus_tag=YPO2323
AL590842.1	EMBL	CDS	2613025	2613630	.	+	0	ID=cds2260;Parent=gene2302;Dbxref=GOA:Q8ZE60,InterPro:IPR003680,InterPro:IPR023048,InterPro:IPR029039,PDB:4ESE,NCBI_GP:CAL20951.1;Name=CAL20951.1;Note=Similar to Escherichia coli acyl carrier protein phosphodiesterase AcpD SW:ACPD_ECOLI (P41407) (200 aa) fasta scores: E(): 0%2C 81.0%25 id in 200 aa%2C and to Haemophilus influenzae acyl carrier protein phosphodiesterase AcpD SW:ACPD_HAEIN (P43013) (194 aa) fasta scores: E(): 0%2C 52.2%25 id in 201 aa;gbkey=CDS;gene=acpD;product=acyl carrier protein phosphodiesterase;protein_id=CAL20951.1;transl_table=11
AL590842.1	EMBL	gene	2613751	2614707	.	-	.	ID=gene2303;Name=YPO2324;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2324
AL590842.1	EMBL	CDS	2613751	2614707	.	-	0	ID=cds2261;Parent=gene2303;Dbxref=GOA:Q7CIP2,InterPro:IPR007324,UniProtKB/TrEMBL:Q7CIP2,NCBI_GP:CAL20952.1;Name=CAL20952.1;Note=Similar to Klebsiella pneumoniae repressor DalR TR:O52721 (EMBL:AF045245) (313 aa) fasta scores: E(): 0%2C44.9%25 id in 312 aa%2C and to Bacillus subtilis deoxyribonucleoside regulator DeoR SW:DEOR_BACSU (P39140) (313 aa) fasta scores: E(): 2.9e-17%2C 26.6%25 id in 316 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF045245;product=putative transcriptional regulatory protein;protein_id=CAL20952.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2614576	2614641	.	-	.	ID=id5414;Note=Predicted helix-turn-helix motif with score 1655 (+4.82 SD) at aa 23-44%2C sequence QTQHEIAEALGVSRQVAQRLVA;gbkey=misc_feature
AL590842.1	EMBL	ribosome_entry_site	2614907	2614910	.	+	.	ID=id5415;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2614917	2616308	.	+	.	ID=gene2304;Name=dalD;gbkey=Gene;gene=dalD;gene_biotype=protein_coding;locus_tag=YPO2325
AL590842.1	EMBL	CDS	2614917	2616308	.	+	0	ID=cds2262;Parent=gene2304;Dbxref=GOA:P58709,InterPro:IPR000669,InterPro:IPR008927,InterPro:IPR013118,InterPro:IPR013131,InterPro:IPR013328,InterPro:IPR016040,NCBI_GP:CAL20953.1;Name=CAL20953.1;Note=Similar to Klebsiella pneumoniae D-arabinitol dehydrogenase DalD TR:O52720 (EMBL:AF045245) (455 aa) fasta scores: E(): 0%2C 64.4%25 id in 449 aa%2C and to Rhodobacter sphaeroides mannitol 2-dehydrogenase MtlK SW:MTLK_RHOSH (P33216) (476 aa) fasta scores: E(): 0%2C 34.0%25 id in 438 aa;gbkey=CDS;gene=dalD;inference=similar to sequence:INSDC:AF045245;product=putative mannitol dehydrogenase;protein_id=CAL20953.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2614953	2616176	.	+	.	ID=id5416;Note=Pfam match to entry PF01232 Mannitol_dh%2C Mannitol dehydrogenase%2C score 496.90%2C E-value 1.6e-145;gbkey=misc_feature;gene=dalD;inference=protein motif:PF01232
AL590842.1	EMBL	gene	2616509	2616880	.	-	.	ID=gene2305;Name=YPO2326;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2326
AL590842.1	EMBL	CDS	2616509	2616880	.	-	0	ID=cds2263;Parent=gene2305;Dbxref=InterPro:IPR008309,UniProtKB/TrEMBL:Q7CIP3,NCBI_GP:CAL20954.1;Name=CAL20954.1;Note=Similar to Escherichia coli hypothetical protein YdbL SW:YDBL_ECOLI (P76076) (108 aa) fasta scores: E(): 3.5e-17%2C 52.9%25 id in 104 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL20954.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2616887	2616891	.	-	.	ID=id5417;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2616890	2617075	.	-	.	ID=gene2306;Name=YPO2327;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2327
AL590842.1	EMBL	CDS	2616890	2617075	.	-	0	ID=cds2264;Parent=gene2306;Dbxref=InterPro:IPR025985,UniProtKB/TrEMBL:Q0WEJ4,NCBI_GP:CAL20955.1;Name=CAL20955.1;Note=Similar to Escherichia coli hypothetical protein YnbE SW:YNBE_ECOLI (P76075) (61 aa) fasta scores: E(): 1.7e-10%2C 66.0%25 id in 50 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA5306 TR:AAG08691 (EMBL:AE004943) (63 aa) fasta scores: E(): 2.3e-06%2C 44.4%25 id in 54 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004943;product=putative lipoprotein;protein_id=CAL20955.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2617022	2617054	.	-	.	ID=id5418;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	2617081	2619777	.	-	.	ID=gene2307;Name=YPO2328;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2328
AL590842.1	EMBL	CDS	2617081	2619777	.	-	0	ID=cds2265;Parent=gene2307;Dbxref=InterPro:IPR021730,UniProtKB/TrEMBL:Q0WEJ3,NCBI_GP:CAL20956.1;Name=CAL20956.1;Note=Similar to Escherichia coli hypothetical protein YdbH SW:YDBH_ECOLI (P52645) (879 aa) fasta scores: E(): 0%2C46.9%25 id in 870 aa;gbkey=CDS;product=putative membrane protein;protein_id=CAL20956.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2617861	2617884	.	-	.	ID=id5419;Note=PS00687 Aldehyde dehydrogenases glutamic acid active site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00687
AL590842.1	EMBL	sequence_feature	2619691	2619756	.	-	.	ID=id5420;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	repeat_region	2617144	2617179	.	-	.	ID=id5421;Note=2x amino acid repeat SLPSAS;gbkey=repeat_region
AL590842.1	EMBL	ribosome_entry_site	2617085	2617089	.	-	.	ID=id5422;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	ribosome_entry_site	2620032	2620035	.	+	.	ID=id5423;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2620043	2621035	.	+	.	ID=gene2308;Name=hslI;gbkey=Gene;gene=hslI;gene_biotype=protein_coding;gene_synonym=htpH,ldhA;locus_tag=YPO2329
AL590842.1	EMBL	CDS	2620043	2621035	.	+	0	ID=cds2266;Parent=gene2308;Dbxref=GOA:Q0WEJ2,InterPro:IPR006139,InterPro:IPR006140,InterPro:IPR016040,InterPro:IPR029752,InterPro:IPR029753,UniProtKB/TrEMBL:Q0WEJ2,NCBI_GP:CAL20957.1;Name=CAL20957.1;Note=Similar to Escherichia coli D-lactate dehydrogenase LdhA SW:LDHD_ECOLI (P52643) (329 aa) fasta scores: E(): 0%2C81.3%25 id in 326 aa%2C and to Haemophilus influenzae 2-hydroxyacid dehydrogenase homologue Ddh SW:DDH_HAEIN (P44501) (331 aa) fasta scores: E(): 0%2C 72.6%25 id in 328 aa;gbkey=CDS;gene=hslI;product=D-lactate dehydrogenase;protein_id=CAL20957.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2620274	2620927	.	+	.	ID=id5424;Note=Pfam match to entry PF00389 2-Hacid_DH%2C D-isomer specific 2-hydroxyacid dehydrogenases%2C score 376.60%2CE-value 6e-154;gbkey=misc_feature;gene=hslI;inference=protein motif:PF00389
AL590842.1	EMBL	sequence_feature	2620481	2620564	.	+	.	ID=id5425;Note=PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.;gbkey=misc_feature;gene=hslI;inference=protein motif:ProSite:PS00065
AL590842.1	EMBL	sequence_feature	2620622	2620690	.	+	.	ID=id5426;Note=PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2.;gbkey=misc_feature;gene=hslI;inference=protein motif:ProSite:PS00670
AL590842.1	EMBL	sequence_feature	2620709	2620759	.	+	.	ID=id5427;Note=PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3.;gbkey=misc_feature;gene=hslI;inference=protein motif:ProSite:PS00671
AL590842.1	EMBL	gene	2621105	2621557	.	+	.	ID=gene2309;Name=hslJ;gbkey=Gene;gene=hslJ;gene_biotype=protein_coding;locus_tag=YPO2330
AL590842.1	EMBL	CDS	2621105	2621557	.	+	0	ID=cds2267;Parent=gene2309;Dbxref=InterPro:IPR005184,UniProtKB/TrEMBL:Q7CIP4,NCBI_GP:CAL20958.1;Name=CAL20958.1;Note=Similar to Escherichia coli heat shock protein HslJ SW:HSLJ_ECOLI (P52644) (140 aa) fasta scores: E(): 3.3e-19%2C45.8%25 id in 153 aa%2C and to Vibrio cholerae heat shock protein HslJ TR:Q9KRH9 (EMBL:AE004244) (147 aa) fasta scores: E(): 3.3e-11%2C 36.1%25 id in 122 aa;gbkey=CDS;gene=hslJ;inference=similar to sequence:INSDC:AE004244;product=putative heat shock protein;protein_id=CAL20958.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2621123	2621155	.	+	.	ID=id5428;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=hslJ;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	2621615	2621956	.	-	.	ID=gene2310;Name=YPO2331;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2331
AL590842.1	EMBL	CDS	2621615	2621956	.	-	0	ID=cds2268;Parent=gene2310;Dbxref=InterPro:IPR005590,UniProtKB/TrEMBL:Q0WEJ0,NCBI_GP:CAL20959.1;Name=CAL20959.1;Note=C-terminal region is similar to the C-termini of Escherichia coli hypothetical protein YdbJ SW:YDBJ_ECOLI (P52646) (51 aa) fasta scores: E(): 1.2e-08%2C 50.0%25 id in 70 aa%2C and the full length Escherichia coli hypothetical protein YoaF SW:YOAF_ECOLI (P76244) (84 aa) fasta scores: E(): 0.65%2C 37.3%25 id in 51 aa;gbkey=CDS;product=putative lipoprotein;protein_id=CAL20959.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2621618	2621629	.	-	.	ID=id5429;Note=PS00294 Prenyl group binding site (CAAX box).;gbkey=misc_feature;inference=protein motif:ProSite:PS00294
AL590842.1	EMBL	sequence_feature	2621903	2621935	.	-	.	ID=id5430;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	repeat_region	2621759	2621794	.	-	.	ID=id5431;Note=2x repeat: VNMSN(D/S);gbkey=repeat_region
AL590842.1	EMBL	repeat_region	2621846	2621881	.	-	.	ID=id5432;Note=2x repeat: NTLNNS;gbkey=repeat_region
AL590842.1	EMBL	gene	2622241	2622900	.	+	.	ID=gene2311;Name=YPO2332;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2332
AL590842.1	EMBL	CDS	2622241	2622900	.	+	0	ID=cds2269;Parent=gene2311;Dbxref=GOA:Q7CIP5,InterPro:IPR003416,UniProtKB/TrEMBL:Q7CIP5,NCBI_GP:CAL20960.1;Name=CAL20960.1;Note=Similar to Escherichia coli hypothetical 23.2 kDa protein in slp-hdeB intergenic region YhiD SW:YHID_ECOLI (P26606) (215 aa) fasta scores: E(): 0%2C 46.5%25 id in 213 aa%3B~Similar to Escherichia coli hypothetical protein YhiD SW:YHID_ECOLI (P26606) (215 aa) fasta scores: E(): 0%2C46.5%25 id in 213 aa%2C and to Treponema pallidum Mg2+ transport protein TP0774 TR:O83753 (EMBL:AE001249) (224 aa) fasta scores: E(): 5.9e-19%2C 35.4%25 id in 223 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE001249;product=putative membrane protein;protein_id=CAL20960.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2622253	2622306	.	+	.	ID=id5433;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2622265	2622666	.	+	.	ID=id5434;Note=Pfam match to entry PF02308 MgtC%2C %2C score 211.60%2CE-value 1.2e-59;gbkey=misc_feature;inference=protein motif:PF02308
AL590842.1	EMBL	sequence_feature	2622340	2622399	.	+	.	ID=id5435;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2622442	2622501	.	+	.	ID=id5436;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2622535	2622603	.	+	.	ID=id5437;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2622960	2623298	.	-	.	ID=gene2312;Name=qacE;gbkey=Gene;gene=qacE;gene_biotype=protein_coding;locus_tag=YPO2333
AL590842.1	EMBL	CDS	2622960	2623298	.	-	0	ID=cds2270;Parent=gene2312;Dbxref=GOA:Q7CIP6,InterPro:IPR000390,UniProtKB/TrEMBL:Q7CIP6,NCBI_GP:CAL20961.1;Name=CAL20961.1;Note=Similar to Escherichia coli%2C and Klebsiella aerogenes quaternary ammonium compound-resistance protein QacE SW:QACE_ECOLI (Q57225) (110 aa) fasta scores: E(): 1.5e-21%2C 54.5%25 id in 110 aa;gbkey=CDS;gene=qacE;inference=protein motif:TMHMM:2.0;product=quaternary ammonium compound-resistance protein;protein_id=CAL20961.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2622978	2623043	.	-	.	ID=id5438;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=qacE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2623011	2623289	.	-	.	ID=id5439;Note=Pfam match to entry PF00893 DUF7%2C Integral membrane protein DUF7%2C score 134.80%2C E-value 1.6e-36;gbkey=misc_feature;gene=qacE;inference=protein motif:PF00893
AL590842.1	EMBL	sequence_feature	2623059	2623124	.	-	.	ID=id5440;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=qacE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2623152	2623202	.	-	.	ID=id5441;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=qacE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2623233	2623283	.	-	.	ID=id5442;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=qacE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2623771	2627304	.	+	.	ID=gene2313;Name=nifJ;gbkey=Gene;gene=nifJ;gene_biotype=protein_coding;locus_tag=YPO2334
AL590842.1	EMBL	CDS	2623771	2627304	.	+	0	ID=cds2271;Parent=gene2313;Dbxref=GOA:Q7CIP7,InterPro:IPR001450,InterPro:IPR002869,InterPro:IPR002880,InterPro:IPR009014,InterPro:IPR011766,InterPro:IPR011895,InterPro:IPR017896,InterPro:IPR017900,InterPro:IPR019456,InterPro:IPR019752,InterPro:IPR029061,UniProtKB/TrEMBL:Q7CIP7,NCBI_GP:CAL20962.1;Name=CAL20962.1;Note=Similar to Escherichia coli probable pyruvate-flavodoxin oxidoreductase YdbK SW:NIFJ_ECOLI (P52647) (1174 aa) fasta scores: E(): 0%2C 80.5%25 id in 1177 aa%2C and to Klebsiella pneumoniae pyruvate-flavodoxin oxidoreductase NifJ SW:NIFJ_KLEPN (P03833) (1171 aa) fasta scores: E(): 0%2C 48.0%25 id in 1184 aa;gbkey=CDS;gene=nifJ;product=putative pyruvate-flavodoxin oxidoreductase;protein_id=CAL20962.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2623885	2624742	.	+	.	ID=id5443;Note=Pfam match to entry PF01855 POR_N%2C Pyruvate flavodoxin/ferredoxin oxidoreductase (N terminus)%2C score 499.00%2C E-value 3.6e-146;gbkey=misc_feature;gene=nifJ;inference=protein motif:PF01855
AL590842.1	EMBL	sequence_feature	2625046	2625600	.	+	.	ID=id5444;Note=Pfam match to entry PF01558 POR%2C Pyruvate ferredoxin/flavodoxin oxidoreductase%2C score 246.10%2C E-value 5e-70;gbkey=misc_feature;gene=nifJ;inference=protein motif:PF01558
AL590842.1	EMBL	sequence_feature	2625322	2625369	.	+	.	ID=id5445;Note=PS00024 Hemopexin domain signature.;gbkey=misc_feature;gene=nifJ;inference=protein motif:ProSite:PS00024
AL590842.1	EMBL	sequence_feature	2625814	2625885	.	+	.	ID=id5446;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 30.80%2C E-value 3.2e-05;gbkey=misc_feature;gene=nifJ;inference=protein motif:PF00037
AL590842.1	EMBL	sequence_feature	2625835	2625870	.	+	.	ID=id5447;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;gene=nifJ;inference=protein motif:ProSite:PS00198
AL590842.1	EMBL	sequence_feature	2625982	2626053	.	+	.	ID=id5448;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 21.60%2C E-value 0.0012;gbkey=misc_feature;gene=nifJ;inference=protein motif:PF00037
AL590842.1	EMBL	sequence_feature	2626003	2626038	.	+	.	ID=id5449;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;gene=nifJ;inference=protein motif:ProSite:PS00198
AL590842.1	EMBL	gene	2627579	2628520	.	+	.	ID=gene2314;Name=YPO2335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2335
AL590842.1	EMBL	CDS	2627579	2628520	.	+	0	ID=cds2272;Parent=gene2314;Dbxref=GOA:Q7CIP8,InterPro:IPR011063,InterPro:IPR012089,InterPro:IPR014729,NCBI_GP:CAL20963.1;Name=CAL20963.1;Note=Similar to Escherichia coli hypothetical protein YdaO SW:YDAO_ECOLI (P76055) (311 aa) fasta scores: E(): 0%2C82.7%25 id in 313 aa%2C and to Vibrio cholerae hypothetical protein VC1432 vc1432 TR:Q9KS29 (EMBL:AE004222) (310 aa) fasta scores: E(): 0%2C 72.8%25 id in 312 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004222;product=conserved hypothetical protein;protein_id=CAL20963.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2627579	2628439	.	+	.	ID=id5450;Note=Pfam match to entry PF01171 UPF0021%2C Uncharacterized protein family UPF0021%2C score -58.20%2C E-value 0.0002;gbkey=misc_feature;inference=protein motif:PF01171
AL590842.1	EMBL	ribosome_entry_site	2628778	2628781	.	+	.	ID=id5451;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2628791	2629795	.	+	.	ID=gene2315;Name=YPO2336;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2336
AL590842.1	EMBL	CDS	2628791	2629795	.	+	0	ID=cds2273;Parent=gene2315;Dbxref=GOA:Q0WEI5,InterPro:IPR013094,InterPro:IPR029058,UniProtKB/TrEMBL:Q0WEI5,NCBI_GP:CAL20964.1;Name=CAL20964.1;Note=Similar to Deinococcus radiodurans putative lipase/esterase DR0133 TR:Q9RY19 (EMBL:AE001876) (296 aa) fasta scores: E(): 1.7e-10%2C 29.1%25 id in 320 aa%2C and to Acetobacter pasteurianus putative arylesterase Est1 TR:O66374 (EMBL:AB012140) (317 aa) fasta scores: E(): 8.5e-07%2C 25.4%25 id in 284 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE001876;product=putative exported protein;protein_id=CAL20964.1;transl_table=11
AL590842.1	EMBL	gene	2630107	2630946	.	+	.	ID=gene2316;Name=YPO2337;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2337
AL590842.1	EMBL	CDS	2630107	2630946	.	+	0	ID=cds2274;Parent=gene2316;Dbxref=GOA:Q7CIP9,InterPro:IPR000551,InterPro:IPR009061,InterPro:IPR011256,UniProtKB/TrEMBL:Q7CIP9,NCBI_GP:CAL20965.1;Name=CAL20965.1;Note=Similar to Clostridium difficile transcriptional activator TR:AAG15273 (EMBL:AF093568) (272 aa) fasta scores: E(): 0.00036%2C 21.8%25 id in 239 aa. N-terminal region is similar to Rhizobium meliloti heavy metal dependent transcription regulator HmrR SW:HMRR_RHIME (Q9X5X4) (147 aa) fasta scores: E(): 0.099%2C 28.0%25 id in 125 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF093568;product=putative regulatory protein;protein_id=CAL20965.1;transl_table=11
AL590842.1	EMBL	gene	2631320	2632303	.	-	.	ID=gene2317;Name=YPO2338;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2338
AL590842.1	EMBL	CDS	2631320	2632303	.	-	0	ID=cds2275;Parent=gene2317;Dbxref=GOA:Q8ZE46,InterPro:IPR002523,InterPro:IPR023714,NCBI_GP:CAL20966.1;Name=CAL20966.1;Note=Similar to Escherichia coli hypothetical protein TR:P76054 (EMBL:AE000232) (327 aa) fasta scores: E(): 0%2C64.5%25 id in 327 aa%2C and to Pseudomonas aeruginosa putative cytoplasmic membrane-associated protein CmaX TR:Q9ZIH2 (EMBL:AF027290) (332 aa) fasta scores: E(): 0%2C 34.5%25 id in 322 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF027290;product=CorA-like Mg2+ transporter protein;protein_id=CAL20966.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2631323	2632201	.	-	.	ID=id5452;Note=Pfam match to entry PF01544 CorA%2C CorA-like Mg2+ transporter protein%2C score 11.90%2C E-value 2e-08;gbkey=misc_feature;inference=protein motif:PF01544
AL590842.1	EMBL	sequence_feature	2631341	2631406	.	-	.	ID=id5453;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2631422	2631487	.	-	.	ID=id5454;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2632546	2634162	.	-	.	ID=gene2318;Name=mppA;gbkey=Gene;gene=mppA;gene_biotype=protein_coding;locus_tag=YPO2339
AL590842.1	EMBL	CDS	2632546	2634162	.	-	0	ID=cds2276;Parent=gene2318;Dbxref=GOA:Q7CIQ0,InterPro:IPR000914,InterPro:IPR023765,UniProtKB/TrEMBL:Q7CIQ0,NCBI_GP:CAL20967.1;Name=CAL20967.1;Note=Similar to Escherichia coli periplasmic murein peptide-binding protein precursor MppA SW:MPPA_ECOLI (P77348) (537 aa) fasta scores: E(): 0%2C 70.6%25 id in 537 aa%2Cand to Vibrio cholerae oligopeptide ABC transporter%2Cperiplasmic oligopeptide-binding protein VC1091 TR:Q9KT14 (EMBL:AE004190) (543 aa) fasta scores: E(): 0%2C 48.5%25 id in 532 aa;gbkey=CDS;gene=mppA;inference=similar to sequence:INSDC:AE004190;product=putative periplasmic murein peptide-binding protein;protein_id=CAL20967.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2632558	2634144	.	-	.	ID=id5455;Note=Pfam match to entry PF00496 SBP_bac_5%2C Bacterial extracellular solute-binding proteins%2C family 5%2C score 531.50%2C E-value 5.9e-156;gbkey=misc_feature;gene=mppA;inference=protein motif:PF00496
AL590842.1	EMBL	sequence_feature	2633851	2633916	.	-	.	ID=id5456;Note=PS01040 Bacterial extracellular solute-binding proteins%2C family 5 signature.;gbkey=misc_feature;gene=mppA;inference=protein motif:ProSite:PS01040
AL590842.1	EMBL	gene	2634540	2635310	.	+	.	ID=gene2319;Name=YPO2340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2340
AL590842.1	EMBL	CDS	2634540	2635310	.	+	0	ID=cds2277;Parent=gene2319;Dbxref=GOA:Q7CIQ1,InterPro:IPR000834,UniProtKB/TrEMBL:Q7CIQ1,NCBI_GP:CAL20968.1;Name=CAL20968.1;Note=Similar to Shigella dysenteriae hypothetical protein YcjI TR:Q9LA26 (EMBL:AF153317) (262 aa) fasta scores: E(): 0%2C 70.6%25 id in 231 aa%2C and to Escherichia coli hypothetical protein YcjI SW:YCJI_ECOLI (P51983) (262 aa) fasta scores: E(): 0%2C 70.6%25 id in 231 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF153317;product=conserved hypothetical protein;protein_id=CAL20968.1;transl_table=11
AL590842.1	EMBL	gene	2635352	2636326	.	-	.	ID=gene2320;Name=YPO2341;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2341
AL590842.1	EMBL	CDS	2635352	2636326	.	-	0	ID=cds2278;Parent=gene2320;Dbxref=GOA:Q7CIQ2,InterPro:IPR001354,InterPro:IPR013341,InterPro:IPR013342,InterPro:IPR018110,InterPro:IPR029017,InterPro:IPR029065,UniProtKB/TrEMBL:Q7CIQ2,NCBI_GP:CAL20969.1;Name=CAL20969.1;Note=Weak similarity to Pseudomonas putida muconate cycloisomerase I CatB SW:CATB_PSEPU (P08310) (374 aa) fasta scores: E(): 7.5e-07%2C 25.2%25 id in 318 aa. Similar to Escherichia coli hypothetical protein YcjG SW:YCJG_ECOLI (P51981) (321 aa) fasta scores: E(): 0%2C 67.9%25 id in 321 aa;gbkey=CDS;product=putative mandelate racemase / muconate lactonizing protein;protein_id=CAL20969.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2635364	2636326	.	-	.	ID=id5457;Note=Pfam match to entry PF01188 MR_MLE%2C Mandelate racemase / muconate lactonizing enzyme family%2C score 273.10%2C E-value 3.6e-78;gbkey=misc_feature;inference=protein motif:PF01188
AL590842.1	EMBL	sequence_feature	2635715	2635810	.	-	.	ID=id5458;Note=PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00909
AL590842.1	EMBL	ribosome_entry_site	2636332	2636337	.	-	.	ID=id5459;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2636489	2636992	.	+	.	ID=gene2321;Name=tpx;gbkey=Gene;gene=tpx;gene_biotype=protein_coding;locus_tag=YPO2342
AL590842.1	EMBL	CDS	2636489	2636992	.	+	0	ID=cds2279;Parent=gene2321;Dbxref=GOA:Q8ZE42,InterPro:IPR002065,InterPro:IPR012336,InterPro:IPR013740,InterPro:IPR018219,NCBI_GP:CAL20970.1;Name=CAL20970.1;Note=Similar to Escherichia coli thiol peroxidase Tpx SW:TPX_ECOLI (P37901) (167 aa) fasta scores: E(): 0%2C 79.5%25 id in 166 aa%2C and to Shigella dysenteriae thiol peroxidase Tpx SW:TPX_SHIDY (P57669) (167 aa) fasta scores: E(): 0%2C79.5%25 id in 166 aa;gbkey=CDS;gene=tpx;product=thiol peroxidase;protein_id=CAL20970.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2636549	2636983	.	+	.	ID=id5460;Note=Pfam match to entry PF00578 AhpC-TSA%2C AhpC/TSA family%2C score 128.70%2C E-value 1e-34;gbkey=misc_feature;gene=tpx;inference=protein motif:PF00578
AL590842.1	EMBL	sequence_feature	2636738	2636773	.	+	.	ID=id5461;Note=PS01265 Tpx family signature.;gbkey=misc_feature;gene=tpx;inference=protein motif:ProSite:PS01265
AL590842.1	EMBL	repeat_region	2637100	2637811	.	+	.	ID=id5462;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	2637245	2637703	.	+	.	ID=gene2322;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO2343
AL590842.1	EMBL	CDS	2637245	2637703	.	+	0	ID=cds2280;Parent=gene2322;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL20971.1;Name=CAL20971.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL20971.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2637299	2637610	.	+	.	ID=id5463;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	2637850	2639427	.	-	.	ID=gene2323;Name=tyrR;gbkey=Gene;gene=tyrR;gene_biotype=protein_coding;locus_tag=YPO2344
AL590842.1	EMBL	CDS	2637850	2639427	.	-	0	ID=cds2281;Parent=gene2323;Dbxref=GOA:Q0WEH7,InterPro:IPR000014,InterPro:IPR002078,InterPro:IPR002912,InterPro:IPR003593,InterPro:IPR009057,InterPro:IPR013767,InterPro:IPR025662,InterPro:IPR025943,InterPro:IPR025944,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WEH7,NCBI_GP:CAL20972.1;Name=CAL20972.1;Note=Similar to Escherichia coli transcriptional regulatory protein TyrR SW:TYRR_ECOLI (P07604) (513 aa) fasta scores: E(): 0%2C 70.8%25 id in 517 aa%2C and to Erwinia herbicola transcriptional regulatory protein TyrR SW:TYRR_ERWHE (Q9ZIB7) (521 aa) fasta scores: E(): 0%2C 74.3%25 id in 517 aa;gbkey=CDS;gene=tyrR;product=transcriptional regulatory protein;protein_id=CAL20972.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2637904	2637969	.	-	.	ID=id5464;Note=Predicted helix-turn-helix motif with score 1684 (+4.92 SD) at aa 487-508%2C sequence PSTRKLAKRLGVSHTAIANKLR;gbkey=misc_feature;gene=tyrR
AL590842.1	EMBL	sequence_feature	2638117	2638812	.	-	.	ID=id5465;Note=Pfam match to entry PF00158 sigma54%2C Sigma-54 transcription factors%2C score 460.00%2C E-value 1.9e-134;gbkey=misc_feature;gene=tyrR;inference=protein motif:PF00158
AL590842.1	EMBL	sequence_feature	2638144	2638173	.	-	.	ID=id5466;Note=PS00688 Sigma-54 interaction domain C-terminal part signature.;gbkey=misc_feature;gene=tyrR;inference=protein motif:ProSite:PS00688
AL590842.1	EMBL	sequence_feature	2638507	2638554	.	-	.	ID=id5467;Note=PS00676 Sigma-54 interaction domain ATP-binding region B signature.;gbkey=misc_feature;gene=tyrR;inference=protein motif:ProSite:PS00676
AL590842.1	EMBL	sequence_feature	2638699	2638740	.	-	.	ID=id5468;Note=PS00675 Sigma-54 interaction domain ATP-binding region A signature.;gbkey=misc_feature;gene=tyrR;inference=protein motif:ProSite:PS00675
AL590842.1	EMBL	sequence_feature	2638996	2639190	.	-	.	ID=id5469;Note=Pfam match to entry PF00989 PAS%2C PAS domain%2C score 29.70%2C E-value 1.3e-06;gbkey=misc_feature;gene=tyrR;inference=protein motif:PF00989
AL590842.1	EMBL	ribosome_entry_site	2639752	2639758	.	+	.	ID=id5470;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2639762	2640208	.	+	.	ID=gene2324;Name=YPO2345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2345
AL590842.1	EMBL	CDS	2639762	2640208	.	+	0	ID=cds2282;Parent=gene2324;Dbxref=InterPro:IPR011979,InterPro:IPR024467,UniProtKB/TrEMBL:Q7CIQ4,NCBI_GP:CAL20973.1;Name=CAL20973.1;Note=Similar to Yersinia enterocolitica hypothetical protein TR:AAG22120 (EMBL:AY008264) (148 aa) fasta scores: E(): 0%2C 93.9%25 id in 148 aa;gbkey=CDS;inference=similar to sequence:INSDC:AY008264;product=conserved hypothetical protein;protein_id=CAL20973.1;transl_table=11
AL590842.1	EMBL	gene	2640270	2640728	.	+	.	ID=gene2325;Name=YPO2346;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2346
AL590842.1	EMBL	CDS	2640270	2640728	.	+	0	ID=cds2283;Parent=gene2325;Dbxref=InterPro:IPR014914,UniProtKB/TrEMBL:Q74TM0,NCBI_GP:CAL20974.1;Name=CAL20974.1;Note=Similar to Yersinia enterocolitica hypothetical protein TR:AAG22119 (EMBL:AY008264) (152 aa) fasta scores: E(): 0%2C 86.2%25 id in 152 aa;gbkey=CDS;inference=similar to sequence:INSDC:AY008264;product=conserved hypothetical protein;protein_id=CAL20974.1;transl_table=11
AL590842.1	EMBL	gene	2640738	2641799	.	-	.	ID=gene2326;Name=YPO2347;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2347
AL590842.1	EMBL	CDS	2640738	2641799	.	-	0	ID=cds2284;Parent=gene2326;Dbxref=GOA:Q8ZE38,InterPro:IPR006507,InterPro:IPR021147,NCBI_GP:CAL20975.1;Name=CAL20975.1;Note=Similar to Yersinia enterocolitica hypothetical protein YcjF TR:AAG22118 (EMBL:AY008264) (354 aa) fasta scores: E(): 0%2C 92.4%25 id in 353 aa%2C and to Escherichia coli hypothetical protein YcjF SW:YCJF_ECOLI (P45525) (353 aa) fasta scores: E(): 0%2C 74.1%25 id in 351 aa;gbkey=CDS;inference=similar to sequence:INSDC:AY008264;product=putative membrane protein;protein_id=CAL20975.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2641098	2641163	.	-	.	ID=id5471;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2641434	2641499	.	-	.	ID=id5472;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2641530	2641586	.	-	.	ID=id5473;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2641796	2643193	.	-	.	ID=gene2327;Name=YPO2348;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2348
AL590842.1	EMBL	CDS	2641796	2643193	.	-	0	ID=cds2285;Parent=gene2327;Dbxref=GOA:Q7CIQ5,InterPro:IPR007413,UniProtKB/TrEMBL:Q7CIQ5,NCBI_GP:CAL20976.1;Name=CAL20976.1;Note=Similar to Yersinia enterocolitica hypothetical protein YcjX TR:AAG22117 (EMBL:AY008264) (465 aa) fasta scores: E(): 0%2C 95.5%25 id in 465 aa%2C and to Escherichia coli hypothetical protein YcjX SW:YCJX_ECOLI (P76046) (465 aa) fasta scores: E(): 0%2C 80.6%25 id in 465 aa;gbkey=CDS;inference=similar to sequence:INSDC:AY008264;product=conserved hypothetical protein;protein_id=CAL20976.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2643095	2643118	.	-	.	ID=id5474;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	ribosome_entry_site	2641810	2641813	.	-	.	ID=id5475;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	ribosome_entry_site	2643198	2643203	.	-	.	ID=id5476;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2643501	2643860	.	-	.	ID=gene2328;Name=pspC;gbkey=Gene;gene=pspC;gene_biotype=protein_coding;locus_tag=YPO2349
AL590842.1	EMBL	CDS	2643501	2643860	.	-	0	ID=cds2286;Parent=gene2328;Dbxref=InterPro:IPR007168,InterPro:IPR014320,UniProtKB/TrEMBL:Q7CIQ6,NCBI_GP:CAL20977.1;Name=CAL20977.1;Note=Similar to Yersinia enterocolitica phage shock protein C PspC TR:AAG22115 (EMBL:AY008264) (139 aa) fasta scores: E(): 0%2C 77.8%25 id in 117 aa%2C and to Escherichia coli phage shock protein C PspC SW:PSPC_ECOLI (P23855) (119 aa) fasta scores: E(): 2e-24%2C 54.6%25 id in 119 aa;gbkey=CDS;gene=pspC;inference=similar to sequence:INSDC:AY008264;product=phage shock protein C;protein_id=CAL20977.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2643678	2643743	.	-	.	ID=id5477;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=pspC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2643860	2644087	.	-	.	ID=gene2329;Name=pspB;gbkey=Gene;gene=pspB;gene_biotype=protein_coding;locus_tag=YPO2350
AL590842.1	EMBL	CDS	2643860	2644087	.	-	0	ID=cds2287;Parent=gene2329;Dbxref=GOA:Q7CIQ7,InterPro:IPR009554,UniProtKB/TrEMBL:Q7CIQ7,NCBI_GP:CAL20978.1;Name=CAL20978.1;Note=Similar to Yersinia enterocolitica phage shock protein B PspB TR:AAG22114 (EMBL:AY008264) (75 aa) fasta scores: E(): 2.2e-26%2C 90.7%25 id in 75 aa%2C and to Escherichia coli phage shock protein B PspB SW:PSPB_ECOLI (P23854) (74 aa) fasta scores: E(): 8.8e-18%2C 69.9%25 id in 73 aa;gbkey=CDS;gene=pspB;inference=similar to sequence:INSDC:AY008264;product=phage shock protein B;protein_id=CAL20978.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2644010	2644075	.	-	.	ID=id5478;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=pspB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	ribosome_entry_site	2643870	2643873	.	-	.	ID=id5479;gbkey=regulatory;gene=pspB;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2644249	2644914	.	-	.	ID=gene2330;Name=pspA;gbkey=Gene;gene=pspA;gene_biotype=protein_coding;locus_tag=YPO2351
AL590842.1	EMBL	CDS	2644249	2644914	.	-	0	ID=cds2288;Parent=gene2330;Dbxref=InterPro:IPR007157,InterPro:IPR014319,UniProtKB/TrEMBL:Q7CIQ8,NCBI_GP:CAL20979.1;Name=CAL20979.1;Note=Similar to Yersinia enterocolitica phage shock protein A PspA TR:AAG22113 (EMBL:AY008264) (221 aa) fasta scores: E(): 0%2C 92.3%25 id in 221 aa%2C and to Escherichia coli phage shock protein A PspA SW:PSPA_ECOLI (P23853) (221 aa) fasta scores: E(): 0%2C 79.7%25 id in 217 aa;gbkey=CDS;gene=pspA;inference=similar to sequence:INSDC:AY008264;product=phage shock protein A;protein_id=CAL20979.1;transl_table=11
AL590842.1	EMBL	gene	2645159	2646187	.	+	.	ID=gene2331;Name=pspF;gbkey=Gene;gene=pspF;gene_biotype=protein_coding;locus_tag=YPO2352
AL590842.1	EMBL	CDS	2645159	2646187	.	+	0	ID=cds2289;Parent=gene2331;Dbxref=GOA:Q0WEG9,InterPro:IPR002078,InterPro:IPR002197,InterPro:IPR003593,InterPro:IPR009057,InterPro:IPR014317,InterPro:IPR025943,InterPro:IPR025944,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WEG9,NCBI_GP:CAL20980.1;Name=CAL20980.1;Note=Similar to Escherichia coli phage shock protein (psp) operon transcriptional activator PspF SW:PSPF_ECOLI (P37344) (325 aa) fasta scores: E(): 0%2C 73.3%25 id in 329 aa%2Cand to Yersinia enterocolitica transcriptional activator%2Cphage shock protein F%2C PspF TR:AAG22112 (EMBL:AY008264) (339 aa) fasta scores: E(): 0%2C 85.5%25 id in 339 aa;gbkey=CDS;gene=pspF;inference=similar to sequence:INSDC:AY008264;product=psp operon transcriptional activator;protein_id=CAL20980.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2645180	2645878	.	+	.	ID=id5480;Note=Pfam match to entry PF00158 sigma54%2C Sigma-54 transcription factors%2C score 360.00%2C E-value 2.5e-104;gbkey=misc_feature;gene=pspF;inference=protein motif:PF00158
AL590842.1	EMBL	sequence_feature	2645438	2645485	.	+	.	ID=id5481;Note=PS00676 Sigma-54 interaction domain ATP-binding region B signature.;gbkey=misc_feature;gene=pspF;inference=protein motif:ProSite:PS00676
AL590842.1	EMBL	sequence_feature	2645822	2645851	.	+	.	ID=id5482;Note=PS00688 Sigma-54 interaction domain C-terminal part signature.;gbkey=misc_feature;gene=pspF;inference=protein motif:ProSite:PS00688
AL590842.1	EMBL	sequence_feature	2646068	2646133	.	+	.	ID=id5483;Note=Predicted helix-turn-helix motif with score 1541 (+4.44 SD) at aa 309-330%2C sequence FNQRKAAHLLGLTYHQLRGLLK;gbkey=misc_feature;gene=pspF
AL590842.1	EMBL	repeat_region	2646244	2646955	.	-	.	ID=id5484;Note=Contains a 'A' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	2646352	2646810	.	-	.	ID=gene2332;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO2353
AL590842.1	EMBL	CDS	2646352	2646810	.	-	0	ID=cds2290;Parent=gene2332;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL20981.1;Name=CAL20981.1;Note=Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL20981.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2646445	2646756	.	-	.	ID=id5485;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	2647154	2647339	.	+	.	ID=gene2333;Name=YPO2354;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2354
AL590842.1	EMBL	CDS	2647154	2647339	.	+	0	ID=cds2291;Parent=gene2333;Dbxref=UniProtKB/TrEMBL:Q74TL2,NCBI_GP:CAL20982.1;Name=CAL20982.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL20982.1;transl_table=11
AL590842.1	EMBL	gene	2647475	2649121	.	+	.	ID=gene2334;Name=sapA;gbkey=Gene;gene=sapA;gene_biotype=protein_coding;locus_tag=YPO2355
AL590842.1	EMBL	CDS	2647475	2649121	.	+	0	ID=cds2292;Parent=gene2334;Dbxref=GOA:Q7CIR0,InterPro:IPR000914,InterPro:IPR023765,UniProtKB/TrEMBL:Q7CIR0,NCBI_GP:CAL20983.1;Name=CAL20983.1;Note=Similar to Escherichia coli peptide transport periplasmic protein SapA SW:SAPA_ECOLI (Q47622) (547 aa) fasta scores: E(): 0%2C 76.1%25 id in 545 aa%2C and to Erwinia chrysanthemi antimicrobial peptides resistance protein SapA TR:O86187 (EMBL:AJ222649) (539 aa) fasta scores: E(): 0%2C76.0%25 id in 537 aa;gbkey=CDS;gene=sapA;inference=similar to sequence:INSDC:AJ222649;product=peptide transport periplasmic protein precursor;protein_id=CAL20983.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2647487	2649094	.	+	.	ID=id5486;Note=Pfam match to entry PF00496 SBP_bac_5%2C Bacterial extracellular solute-binding proteins%2C family 5%2C score 763.30%2C E-value 9.7e-226;gbkey=misc_feature;gene=sapA;inference=protein motif:PF00496
AL590842.1	EMBL	sequence_feature	2647727	2647795	.	+	.	ID=id5487;Note=PS01040 Bacterial extracellular solute-binding proteins%2C family 5 signature.;gbkey=misc_feature;gene=sapA;inference=protein motif:ProSite:PS01040
AL590842.1	EMBL	ribosome_entry_site	2649104	2649107	.	+	.	ID=id5488;gbkey=regulatory;gene=sapA;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2649118	2650083	.	+	.	ID=gene2335;Name=sapB;gbkey=Gene;gene=sapB;gene_biotype=protein_coding;locus_tag=YPO2356
AL590842.1	EMBL	CDS	2649118	2650083	.	+	0	ID=cds2293;Parent=gene2335;Dbxref=GOA:Q7CIR1,InterPro:IPR000515,UniProtKB/TrEMBL:Q7CIR1,NCBI_GP:CAL20984.1;Name=CAL20984.1;Note=Similar to Escherichia coli peptide transport system permease protein SapB SW:SAPB_ECOLI (Q47623) (321 aa) fasta scores: E(): 0%2C 76.9%25 id in 321 aa%2C and to Salmonella typhimurium peptide transport system permease protein SapB SW:SAPB_SALTY (P36668) (321 aa) fasta scores: E(): 0%2C 76.9%25 id in 321 aa;gbkey=CDS;gene=sapB;inference=protein motif:TMHMM:2.0;product=peptide transport system permease protein;protein_id=CAL20984.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2649142	2649210	.	+	.	ID=id5489;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=sapB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2649355	2649423	.	+	.	ID=id5490;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=sapB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2649457	2649525	.	+	.	ID=id5491;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=sapB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2649652	2649720	.	+	.	ID=id5492;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=sapB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2649733	2649966	.	+	.	ID=id5493;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 52.90%2C E-value 7.1e-12;gbkey=misc_feature;gene=sapB;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	2649964	2650032	.	+	.	ID=id5494;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=sapB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2650070	2650960	.	+	.	ID=gene2336;Name=sapC;gbkey=Gene;gene=sapC;gene_biotype=protein_coding;locus_tag=YPO2357
AL590842.1	EMBL	CDS	2650070	2650960	.	+	0	ID=cds2294;Parent=gene2336;Dbxref=GOA:Q7CIR2,InterPro:IPR000515,InterPro:IPR025966,UniProtKB/TrEMBL:Q7CIR2,NCBI_GP:CAL20985.1;Name=CAL20985.1;Note=Similar to Escherichia coli peptide transport system permease protein SapC SW:SAPC_ECOLI (Q47624) (296 aa) fasta scores: E(): 0%2C 77.0%25 id in 296 aa%2C and to Salmonella typhimurium peptide transport system permease protein SapC SW:SAPC_SALTY (P36669) (296 aa) fasta scores: E(): 0%2C 77.7%25 id in 296 aa;gbkey=CDS;gene=sapC;inference=protein motif:TMHMM:2.0;product=peptide transport system permease protein;protein_id=CAL20985.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2650151	2650219	.	+	.	ID=id5495;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=sapC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2650367	2650435	.	+	.	ID=id5496;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=sapC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2650469	2650537	.	+	.	ID=id5497;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=sapC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2650610	2650840	.	+	.	ID=id5498;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 35.30%2C E-value 1.4e-06;gbkey=misc_feature;gene=sapC;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	2650850	2650918	.	+	.	ID=id5499;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=sapC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2650960	2651952	.	+	.	ID=gene2337;Name=sapD;gbkey=Gene;gene=sapD;gene_biotype=protein_coding;locus_tag=YPO2358
AL590842.1	EMBL	CDS	2650960	2651952	.	+	0	ID=cds2295;Parent=gene2337;Dbxref=GOA:Q7CIR3,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR010066,InterPro:IPR013563,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CIR3,NCBI_GP:CAL20986.1;Name=CAL20986.1;Note=Similar to Erwinia chrysanthemi antimicrobial peptides resistance protein SapD TR:O86190 (EMBL:AJ222649) (329 aa) fasta scores: E(): 0%2C 83.2%25 id in 327 aa%2C and to Salmonella typhimurium peptide transport system ATP-binding protein SapD SW:SAPD_SALTY (P36636) (330 aa) fasta scores: E(): 0%2C 81.2%25 id in 330 aa;gbkey=CDS;gene=sapD;inference=similar to sequence:INSDC:AJ222649;product=peptide transport system ATP-binding protein;protein_id=CAL20986.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2651056	2651664	.	+	.	ID=id5500;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 212.90%2C E-value 5e-60;gbkey=misc_feature;gene=sapD;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2651077	2651100	.	+	.	ID=id5501;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=sapD;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	ribosome_entry_site	2651940	2651944	.	+	.	ID=id5502;gbkey=regulatory;gene=sapD;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2651952	2652767	.	+	.	ID=gene2338;Name=sapF;gbkey=Gene;gene=sapF;gene_biotype=protein_coding;locus_tag=YPO2359
AL590842.1	EMBL	CDS	2651952	2652767	.	+	0	ID=cds2296;Parent=gene2338;Dbxref=GOA:Q7CIR4,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CIR4,NCBI_GP:CAL20987.1;Name=CAL20987.1;Note=Similar to Escherichia coli peptide transport system ATP-binding protein SapF SW:SAPF_ECOLI (P36637) (268 aa) fasta scores: E(): 0%2C 82.4%25 id in 267 aa%2C and to Salmonella typhimurium peptide transport system ATP-binding protein SapF SW:SAPF_SALTY (P36638) (268 aa) fasta scores: E(): 0%2C81.6%25 id in 267 aa;gbkey=CDS;gene=sapF;product=peptide transport system ATP-binding protein;protein_id=CAL20987.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2652069	2652632	.	+	.	ID=id5503;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 223.20%2C E-value 3.9e-63;gbkey=misc_feature;gene=sapF;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2652090	2652113	.	+	.	ID=id5504;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=sapF;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	2652402	2652446	.	+	.	ID=id5505;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=sapF;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	ribosome_entry_site	2653144	2653148	.	+	.	ID=id5506;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2653157	2654437	.	+	.	ID=gene2339;Name=YPO2360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2360
AL590842.1	EMBL	CDS	2653157	2654437	.	+	0	ID=cds2297;Parent=gene2339;Dbxref=InterPro:IPR029032,UniProtKB/TrEMBL:Q7CIR5,NCBI_GP:CAL20988.1;Name=CAL20988.1;Note=No significant database matches to the full length CDS. C-terminal region is similar to the C-terminus of Escherichia coli hypothetical protein YciW SW:YCIW_ECOLI (P76035) (401 aa) fasta scores: E(): 0%2C 36.4%25 id in 365 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL20988.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2655071	2655074	.	+	.	ID=id5507;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2655080	2656585	.	+	.	ID=gene2340;Name=YPO2361;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2361
AL590842.1	EMBL	CDS	2655080	2656585	.	+	0	ID=cds2298;Parent=gene2340;Dbxref=GOA:Q0WEG0,InterPro:IPR000109,InterPro:IPR005279,InterPro:IPR016196,InterPro:IPR018456,InterPro:IPR023517,NCBI_GP:CAL20989.1;Name=CAL20989.1;Note=Similar to Escherichia coli hypothetical protein YdgR SW:YDGR_ECOLI (P77304) (500 aa) fasta scores: E(): 0%2C75.6%25 id in 487 aa%2C and to Vibrio cholerae proton/peptide symporter family protein VC0988 TR:Q9KTB5 (EMBL:AE004180) (514 aa) fasta scores: E(): 0%2C 58.9%25 id in 494 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004180;product=putative proton dependent peptide transporter;protein_id=CAL20989.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2655143	2655211	.	+	.	ID=id5508;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2655254	2655322	.	+	.	ID=id5509;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2655341	2656372	.	+	.	ID=id5510;Note=Pfam match to entry PF00854 PTR2%2C POT family%2C score 312.70%2C E-value 2.5e-92;gbkey=misc_feature;inference=protein motif:PF00854
AL590842.1	EMBL	sequence_feature	2655347	2655400	.	+	.	ID=id5511;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2655413	2655472	.	+	.	ID=id5512;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2655533	2655601	.	+	.	ID=id5513;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2655533	2655571	.	+	.	ID=id5514;Note=PS01023 PTR2 family proton/oligopeptide symporters signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS01023
AL590842.1	EMBL	sequence_feature	2655611	2655679	.	+	.	ID=id5515;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2655740	2655796	.	+	.	ID=id5516;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2655806	2655865	.	+	.	ID=id5517;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2655902	2655955	.	+	.	ID=id5518;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2656040	2656099	.	+	.	ID=id5519;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2656136	2656204	.	+	.	ID=id5520;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2656232	2656300	.	+	.	ID=id5521;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2656334	2656402	.	+	.	ID=id5522;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2656445	2656513	.	+	.	ID=id5523;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	ribosome_entry_site	2656827	2656835	.	+	.	ID=id5524;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2656840	2657430	.	+	.	ID=gene2341;Name=YPO2362;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2362
AL590842.1	EMBL	CDS	2656840	2657430	.	+	0	ID=cds2299;Parent=gene2341;Dbxref=GOA:Q7CIR6,InterPro:IPR006977,UniProtKB/TrEMBL:Q7CIR6,NCBI_GP:CAL20990.1;Name=CAL20990.1;Note=Similar to Escherichia coli hypothetical protein YohC SW:YOHC_ECOLI (P33365) (195 aa) fasta scores: E(): 0%2C65.5%25 id in 194 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA1190 TR:AAG04579 (EMBL:AE004549) (199 aa) fasta scores: E(): 0%2C 52.6%25 id in 192 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004549;product=putative membrane protein;protein_id=CAL20990.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2656942	2657010	.	+	.	ID=id5525;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2657047	2657115	.	+	.	ID=id5526;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2657158	2657226	.	+	.	ID=id5527;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2657239	2657307	.	+	.	ID=id5528;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2657350	2657418	.	+	.	ID=id5529;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2657676	2657939	.	+	.	ID=gene2342;Name=YPO2363;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2363
AL590842.1	EMBL	CDS	2657676	2657939	.	+	0	ID=cds2300;Parent=gene2342;Dbxref=InterPro:IPR020317,UniProtKB/TrEMBL:Q7CIR7,NCBI_GP:CAL20991.1;Name=CAL20991.1;Note=Similar to Escherichia coli hypothetical protein YjbD SW:YJBD_ECOLI (P32685) (90 aa) fasta scores: E(): 2.1e-11%2C 51.1%25 id in 88 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL20991.1;transl_table=11
AL590842.1	EMBL	repeat_region	2658026	2659979	.	-	.	ID=id5530;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	2658026	2658053	.	+	.	ID=id5531;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	2658092	2658874	.	-	.	ID=gene2343;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO2364
AL590842.1	EMBL	CDS	2658092	2658874	.	-	0	ID=cds2301;Parent=gene2343;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL20992.1;Name=CAL20992.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL20992.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2658167	2658706	.	-	.	ID=id5532;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	2658524	2658547	.	-	.	ID=id5533;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2658871	2659893	.	-	.	ID=gene2344;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO2365
AL590842.1	EMBL	CDS	2658871	2659893	.	-	0	ID=cds2302;Parent=gene2344;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL20993.1;Name=CAL20993.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL20993.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2659015	2659548	.	-	.	ID=id5534;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	sequence_feature	2659777	2659842	.	-	.	ID=id5535;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	2659786	2659869	.	-	.	ID=id5536;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	INVERTED	2659952	2659979	.	-	.	ID=id5537;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	pseudogene	2659979	2660098	.	+	.	ID=gene2345;Name=YPO2366;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO2366;pseudo=true
AL590842.1	EMBL	CDS	2659979	2660098	.	+	0	ID=cds2303;Parent=gene2345;Note=No significant database matches. This CDS is likely to have been disrupted by the upstream IS100 element;gbkey=CDS;product=putative membrane protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	2660018	2660086	.	+	.	ID=id5538;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	ribosome_entry_site	2660132	2660138	.	+	.	ID=id5539;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2660143	2660748	.	+	.	ID=gene2346;Name=gst;gbkey=Gene;gene=gst;gene_biotype=protein_coding;locus_tag=YPO2367
AL590842.1	EMBL	CDS	2660143	2660748	.	+	0	ID=cds2304;Parent=gene2346;Dbxref=GOA:Q0WEF5,InterPro:IPR004045,InterPro:IPR004046,InterPro:IPR010987,InterPro:IPR012336,UniProtKB/TrEMBL:Q0WEF5,NCBI_GP:CAL20995.1;Name=CAL20995.1;Note=Similar to Escherichia coli glutathione S-transferase Gst SW:GT_ECOLI (P39100) (201 aa) fasta scores: E(): 0%2C 60.7%25 id in 201 aa%2C and to Proteus mirabilis glutathione S-transferase Gst SW:GT_PROMI (P15214) (203 aa) fasta scores: E(): 0%2C 61.0%25 id in 200 aa;gbkey=CDS;gene=gst;product=glutathione S-transferase;protein_id=CAL20995.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2660143	2660709	.	+	.	ID=id5540;Note=Pfam match to entry PF00043 GST%2C Glutathione S-transferases.%2C score 171.00%2C E-value 6e-51;gbkey=misc_feature;gene=gst;inference=protein motif:PF00043
AL590842.1	EMBL	gene	2660808	2661668	.	-	.	ID=gene2347;Name=pdxY;gbkey=Gene;gene=pdxY;gene_biotype=protein_coding;locus_tag=YPO2368
AL590842.1	EMBL	CDS	2660808	2661668	.	-	0	ID=cds2305;Parent=gene2347;Dbxref=GOA:Q7CIR8,InterPro:IPR004625,InterPro:IPR013749,InterPro:IPR023685,InterPro:IPR029056,PDB:3PZS,NCBI_GP:CAL20996.1;Name=CAL20996.1;Note=Similar to Escherichia coli pyridoxamine kinase PdxY SW:PDXY_ECOLI (P77150) (287 aa) fasta scores: E(): 0%2C 75.2%25 id in 286 aa%2C and to Proteus mirabilis pyridoxamine kinase PdxY SW:PDXY_PROMI (Q51892) (289 aa) fasta scores: E(): 0%2C72.6%25 id in 288 aa;gbkey=CDS;gene=pdxY;product=pyridoxamine kinase;protein_id=CAL20996.1;transl_table=11
AL590842.1	EMBL	gene	2661823	2663097	.	-	.	ID=gene2348;Name=tyrS;gbkey=Gene;gene=tyrS;gene_biotype=protein_coding;locus_tag=YPO2369
AL590842.1	EMBL	CDS	2661823	2663097	.	-	0	ID=cds2306;Parent=gene2348;Dbxref=GOA:Q8ZE20,InterPro:IPR001412,InterPro:IPR002305,InterPro:IPR002307,InterPro:IPR002942,InterPro:IPR014729,InterPro:IPR024088,InterPro:IPR024107,NCBI_GP:CAL20997.1;Name=CAL20997.1;Note=Similar to Escherichia coli tyrosyl-tRNA synthetase TyrS SW:SYY_ECOLI (P00951) (423 aa) fasta scores: E(): 0%2C86.5%25 id in 421 aa%2C and to Neisseria meningitidis tyrosyl-tRNA synthetase NMB1835 TR:Q9JXY5 (EMBL:AE002533) (431 aa) fasta scores: E(): 0%2C 61.4%25 id in 430 aa;gbkey=CDS;gene=tyrS;inference=similar to sequence:INSDC:AE002533;product=tyrosyl-tRNA synthetase;protein_id=CAL20997.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2662300	2662992	.	-	.	ID=id5541;Note=Pfam match to entry PF00579 tRNA-synt_1b%2C tRNA synthetases class I (W and Y)%2C score 338.70%2C E-value 6.7e-98;gbkey=misc_feature;gene=tyrS;inference=protein motif:PF00579
AL590842.1	EMBL	sequence_feature	2662942	2662974	.	-	.	ID=id5542;Note=PS00178 Aminoacyl-transfer RNA synthetases class-I signature.;gbkey=misc_feature;gene=tyrS;inference=protein motif:ProSite:PS00178
AL590842.1	EMBL	ribosome_entry_site	2663104	2663107	.	-	.	ID=id5543;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2663279	2663932	.	-	.	ID=gene2349;Name=pdxH;gbkey=Gene;gene=pdxH;gene_biotype=protein_coding;locus_tag=YPO2370
AL590842.1	EMBL	CDS	2663279	2663932	.	-	0	ID=cds2307;Parent=gene2349;Dbxref=GOA:Q8ZE19,InterPro:IPR000659,InterPro:IPR011576,InterPro:IPR012349,InterPro:IPR019576,InterPro:IPR019740,NCBI_GP:CAL20998.1;Name=CAL20998.1;Note=Similar to Escherichia coli pyridoxamine 5'-phosphate oxidase PdxH SW:PDXH_ECOLI (P28225) (217 aa) fasta scores: E(): 0%2C 78.3%25 id in 217 aa%2C and to Vibrio cholerae pyridoxamine 5`-phosphate oxidase VCA1079 TR:Q9KKM4 (EMBL:AE004433) (211 aa) fasta scores: E(): 0%2C67.1%25 id in 210 aa;gbkey=CDS;gene=pdxH;inference=similar to sequence:INSDC:AE004433;product=pyridoxamine 5'-phosphate oxidase;protein_id=CAL20998.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2663333	2663374	.	-	.	ID=id5544;Note=PS01064 Pyridoxamine 5'-phosphate oxidase signature.;gbkey=misc_feature;gene=pdxH;inference=protein motif:ProSite:PS01064
AL590842.1	EMBL	sequence_feature	2663282	2663938	.	-	.	ID=id5545;Note=Pfam match to entry PF01243 Pyridox_oxidase%2CPyridoxamine 5'-phosphate oxidase%2C score 427.00%2C E-value 1.7e-124;gbkey=misc_feature;inference=protein motif:PF01243
AL590842.1	EMBL	gene	2664023	2664337	.	-	.	ID=gene2350;Name=YPO2371;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2371
AL590842.1	EMBL	CDS	2664023	2664337	.	-	0	ID=cds2308;Parent=gene2350;Dbxref=InterPro:IPR018660,UniProtKB/TrEMBL:Q0WEF1,NCBI_GP:CAL20999.1;Name=CAL20999.1;Note=Similar to Yersinia enterocolitica hypothetical protein SW:YOR4_YEREN (P28837) (101 aa) fasta scores: E(): 1.2e-26%2C 68.9%25 id in 106 aa%2C and to Escherichia coli hypothetical protein YdhA SW:YDHA_ECOLI (P28224) (109 aa) fasta scores: E(): 5.4e-15%2C 43.1%25 id in 102 aa;gbkey=CDS;product=putative lipoprotein;protein_id=CAL20999.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2664290	2664322	.	-	.	ID=id5546;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	2664395	2665507	.	-	.	ID=gene2351;Name=YPO2372;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2372
AL590842.1	EMBL	CDS	2664395	2665507	.	-	0	ID=cds2309;Parent=gene2351;Dbxref=GOA:Q0WEF0,InterPro:IPR005338,NCBI_GP:CAL21000.1;Name=CAL21000.1;Note=Similar to Escherichia coli hypothetical protein YdhH SW:YDHH_ECOLI (P77570) (369 aa) fasta scores: E(): 0%2C71.2%25 id in 368 aa%2C and to Yersinia enterocolitica hypothetical protein SW:YPCP_YEREN (P31485) (271 aa) fasta scores: E(): 0%2C 80.0%25 id in 255 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21000.1;transl_table=11
AL590842.1	EMBL	gene	2666063	2666530	.	+	.	ID=gene2352;Name=pcp;gbkey=Gene;gene=pcp;gene_biotype=protein_coding;gene_synonym=pcpY,slyB;locus_tag=YPO2373
AL590842.1	EMBL	CDS	2666063	2666530	.	+	0	ID=cds2310;Parent=gene2352;Dbxref=GOA:Q7CIS0,InterPro:IPR008816,UniProtKB/TrEMBL:Q7CIS0,NCBI_GP:CAL21001.1;Name=CAL21001.1;Note=Similar to Yersinia enterocolitica outer membrane lipoprotein precursor Pcp SW:PCP_YEREN (P31484) (155 aa) fasta scores: E(): 0%2C 90.3%25 id in 155 aa%2C to Escherichia coli outer membrane lipoprotein SlyB SW:SLYB_ECOLI (P55741) (155 aa) fasta scores: E(): 0%2C 74.8%25 id in 155 aa and to Yersinia pestis YPO3646 (157 aa) fasta scores: E(): 2.1e-34%2C 69.9%25 identity in 156 aa overlap;gbkey=CDS;gene=pcp;product=putative lipoprotein;protein_id=CAL21001.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2666084	2666116	.	+	.	ID=id5547;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=pcp;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	2666674	2667105	.	-	.	ID=gene2353;Name=slyA;gbkey=Gene;gene=slyA;gene_biotype=protein_coding;locus_tag=YPO2374
AL590842.1	EMBL	CDS	2666674	2667105	.	-	0	ID=cds2311;Parent=gene2353;Dbxref=GOA:P69988,InterPro:IPR000835,InterPro:IPR011991,InterPro:IPR023071,InterPro:IPR023187,NCBI_GP:CAL21002.1;Name=CAL21002.1;Note=Similar to Yersinia enterocolitica transcriptional regulator RovA TR:Q9S3W0 (EMBL:AF171097) (143 aa) fasta scores: E(): 0%2C 95.1%25 id in 143 aa%2C and to Escherichia coli transcriptional regulator SlyA SW:SLYA_ECOLI (P55740) (146 aa) fasta scores: E(): 0%2C 76.9%25 id in 143 aa;gbkey=CDS;gene=slyA;inference=similar to sequence:INSDC:AF171097;product=MarR-family transcriptional regulatory protein;protein_id=CAL21002.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2666707	2667021	.	-	.	ID=id5548;Note=Pfam match to entry PF01047 MarR%2C MarR family%2C score 97.80%2C E-value 2.2e-25;gbkey=misc_feature;gene=slyA;inference=protein motif:PF01047
AL590842.1	EMBL	sequence_feature	2666902	2666967	.	-	.	ID=id5549;Note=Predicted helix-turn-helix motif with score 1097 (+2.92 SD) at aa 47-68%2C sequence QSQIQLAKAIGIEQPSLVRTLD;gbkey=misc_feature;gene=slyA
AL590842.1	EMBL	ribosome_entry_site	2667111	2667118	.	-	.	ID=id5550;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2667903	2668799	.	-	.	ID=gene2354;Name=YPO2375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2375
AL590842.1	EMBL	CDS	2667903	2668799	.	-	0	ID=cds2312;Parent=gene2354;Dbxref=GOA:Q74TJ5,InterPro:IPR001395,InterPro:IPR020471,InterPro:IPR023210,UniProtKB/TrEMBL:Q74TJ5,NCBI_GP:CAL21003.1;Name=CAL21003.1;Note=Similar to Escherichia coli hypothetical oxidoreductase YdhF SW:YDHF_ECOLI (P76187) (298 aa) fasta scores: E(): 0%2C 72.8%25 id in 298 aa%2C and to Vibrio cholerae oxidoreductase%2C aldo/keto reductase 2 family protein VCA0859 TR:Q9KL87 (EMBL:AE004413) (307 aa) fasta scores: E(): 0%2C 61.5%25 id in 296 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004413;product=putative aldo/keto reductase;protein_id=CAL21003.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2668134	2668469	.	-	.	ID=id5551;Note=Pfam match to entry PF00248 aldo_ket_red%2C Aldo/keto reductase family%2C score 28.20%2C E-value 5.2e-07;gbkey=misc_feature;inference=protein motif:PF00248
AL590842.1	EMBL	ribosome_entry_site	2668808	2668812	.	-	.	ID=id5552;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2668931	2669296	.	-	.	ID=gene2355;Name=YPO2376;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2376
AL590842.1	EMBL	CDS	2668931	2669296	.	-	0	ID=cds2313;Parent=gene2355;Dbxref=InterPro:IPR010710,UniProtKB/TrEMBL:Q74TJ4,NCBI_GP:CAL21004.1;Name=CAL21004.1;Note=No significant database matches to the full length CDS. C-terminal region is similar to the C-terminus of Escherichia coli hypothetical protein YdhL SW:YDHL_ECOLI (P76188) (125 aa) fasta scores: E(): 8.6e-25%2C 68.5%25 id in 92 aa%2C and to the full length Vibrio cholerae hypothetical protein VC1662 TR:Q9KRI0 (EMBL:AE004244) (88 aa) fasta scores: E(): 7.9e-12%2C 45.9%25 id in 74 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004244;product=conserved hypothetical protein;protein_id=CAL21004.1;transl_table=11
AL590842.1	EMBL	gene	2669344	2670981	.	+	.	ID=gene2356;Name=YPO2377;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2377
AL590842.1	EMBL	CDS	2669344	2670981	.	+	0	ID=cds2314;Parent=gene2356;Dbxref=GOA:Q74TJ3,InterPro:IPR000917,InterPro:IPR012549,InterPro:IPR017849,InterPro:IPR017850,UniProtKB/TrEMBL:Q74TJ3,NCBI_GP:CAL21005.1;Name=CAL21005.1;Note=Similar to Escherichia coli hypothetical protein YjdB SW:YJDB_ECOLI (P30845) (547 aa) fasta scores: E(): 0%2C51.0%25 id in 533 aa%2C and to Salmonella typhimurium hypothetical protein YjdB SW:YJDB_SALTY (P36555) (547 aa) fasta scores: E(): 0%2C 49.9%25 id in 529 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL21005.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2669344	2670972	.	+	.	ID=id5553;Note=Pfam match to entry PF02418 DUF146%2C %2C score 523.30%2CE-value 1.7e-153;gbkey=misc_feature;inference=protein motif:PF02418
AL590842.1	EMBL	sequence_feature	2669365	2669397	.	+	.	ID=id5554;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	2669482	2669550	.	+	.	ID=id5555;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2669569	2669637	.	+	.	ID=id5556;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2669695	2669763	.	+	.	ID=id5557;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2669797	2669865	.	+	.	ID=id5558;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2671204	2671803	.	+	.	ID=gene2357;Name=YPO2378;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2378
AL590842.1	EMBL	CDS	2671204	2671803	.	+	0	ID=cds2315;Parent=gene2357;Dbxref=GOA:Q7CIS1,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR011075,InterPro:IPR015893,UniProtKB/TrEMBL:Q7CIS1,NCBI_GP:CAL21006.1;Name=CAL21006.1;Note=Similar to Escherichia coli hypothetical transcriptional regulator YdhM SW:YDHM_ECOLI (P76189) (199 aa) fasta scores: E(): 0%2C 51.5%25 id in 200 aa%2C and to Pseudomonas aeruginosa probable transcriptional regulator PA2196 TR:AAG05584 (EMBL:AE004646) (194 aa) fasta scores: E(): 1.9e-27%2C 43.3%25 id in 194 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004646;product=TetR-family transcriptional regulatory protein;protein_id=CAL21006.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2671246	2671386	.	+	.	ID=id5559;Note=Pfam match to entry PF00440 tetR%2C Bacterial regulatory proteins%2C tetR family%2C score 36.80%2C E-value 7.5e-08;gbkey=misc_feature;inference=protein motif:PF00440
AL590842.1	EMBL	sequence_feature	2671264	2671332	.	+	.	ID=id5560;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2671891	2672988	.	+	.	ID=gene2358;Name=YPO2379;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2379
AL590842.1	EMBL	CDS	2671891	2672988	.	+	0	ID=cds2316;Parent=gene2358;Dbxref=GOA:Q74TJ1,InterPro:IPR001155,InterPro:IPR013785,UniProtKB/TrEMBL:Q74TJ1,NCBI_GP:CAL21007.1;Name=CAL21007.1;Note=Similar to Pseudomonas putida morphinone reductase MorB TR:Q51990 (EMBL:U37350) (377 aa) fasta scores: E(): 0%2C53.0%25 id in 362 aa%2C and to Escherichia coli N-ethylmaleimide reductase NemA SW:NEMA_ECOLI (P77258) (365 aa) fasta scores: E(): 0%2C 74.5%25 id in 365 aa;gbkey=CDS;inference=similar to sequence:INSDC:U37350;product=NADH:flavin oxidoreductase / NADH oxidase family protein;protein_id=CAL21007.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2671903	2672922	.	+	.	ID=id5561;Note=Pfam match to entry PF00724 oxidored_FMN%2CNADH:flavin oxidoreductase / NADH oxidase family%2C score 372.10%2C E-value 5.7e-108;gbkey=misc_feature;inference=protein motif:PF00724
AL590842.1	EMBL	gene	2673209	2676163	.	-	.	ID=gene2359;Name=sepC;gbkey=Gene;gene=sepC;gene_biotype=protein_coding;locus_tag=YPO2380
AL590842.1	EMBL	CDS	2673209	2676163	.	-	0	ID=cds2317;Parent=gene2359;Dbxref=GOA:Q74TJ0,InterPro:IPR022385,UniProtKB/TrEMBL:Q74TJ0,NCBI_GP:CAL21008.1;Name=CAL21008.1;Note=Similar to Serratia entomophila plasmid pADAP virulence protein SepC TR:AAG09644 (EMBL:AF135182) (973 aa) fasta scores: E(): 0%2C 73.6%25 id in 987 aa%2C to Photorhabdus luminescens insecticidal toxin complex protein TccC TR:O85157 (EMBL:AF047028) (1043 aa) fasta scores: E(): 0%2C54.8%25 id in 825 aa%2C and to Yersinia pestis YPO2312 putative insecticidal toxin complex (874 aa) fasta scores: E(): 0%2C64.9%25 identity in 880 aa overlap%2C YPO3674 (1011 aa) fasta scores: E(): 0%2C 51.4%25 identity in 699 aa overlap and YPO3673 (952 aa) fasta scores: E(): 0%2C 52.2%25 identity in 696 aa overlap. Note the G+C content - 54.78%25;gbkey=CDS;gene=sepC;inference=similar to sequence:INSDC:AF135182;product=insecticial toxin;protein_id=CAL21008.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2676170	2676175	.	-	.	ID=id5562;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	ribosome_entry_site	2676426	2676429	.	+	.	ID=id5563;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2676436	2676843	.	+	.	ID=gene2360;Name=gloA;gbkey=Gene;gene=gloA;gene_biotype=protein_coding;locus_tag=YPO2381
AL590842.1	EMBL	CDS	2676436	2676843	.	+	0	ID=cds2318;Parent=gene2360;Dbxref=GOA:Q0WEE1,InterPro:IPR004360,InterPro:IPR004361,InterPro:IPR018146,InterPro:IPR029068,UniProtKB/TrEMBL:Q0WEE1,NCBI_GP:CAL21009.1;Name=CAL21009.1;Note=Similar to Escherichia coli lactoylglutathione lyase GloA SW:LGUL_ECOLI (Q59384) (135 aa) fasta scores: E(): 0%2C79.3%25 id in 135 aa%2C and to Salmonella typhimurium lactoylglutathione lyase GloA SW:LGUL_SALTY (Q60003) (135 aa) fasta scores: E(): 0%2C 77.8%25 id in 135 aa;gbkey=CDS;gene=gloA;product=lactoylglutathione lyase;protein_id=CAL21009.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2676448	2676513	.	+	.	ID=id5564;Note=PS00934 Glyoxalase I signature 1.;gbkey=misc_feature;gene=gloA;inference=protein motif:ProSite:PS00934
AL590842.1	EMBL	sequence_feature	2676460	2676813	.	+	.	ID=id5565;Note=Pfam match to entry PF00903 Glyoxalase%2C Glyoxalase%2Cscore 263.70%2C E-value 2.4e-75;gbkey=misc_feature;gene=gloA;inference=protein motif:PF00903
AL590842.1	EMBL	gene	2676955	2677602	.	+	.	ID=gene2361;Name=rnt;gbkey=Gene;gene=rnt;gene_biotype=protein_coding;locus_tag=YPO2382
AL590842.1	EMBL	CDS	2676955	2677602	.	+	0	ID=cds2319;Parent=gene2361;Dbxref=GOA:Q8ZE08,InterPro:IPR005987,InterPro:IPR006055,InterPro:IPR012337,InterPro:IPR013520,NCBI_GP:CAL21010.1;Name=CAL21010.1;Note=Similar to Escherichia coli ribonuclease T Rnt SW:RNT_ECOLI (P30014) (215 aa) fasta scores: E(): 0%2C 79.3%25 id in 213 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) ribonuclease T Rnt SW:RNT_BUCAI (P57285) (221 aa) fasta scores: E(): 0%2C 67.5%25 id in 209 aa;gbkey=CDS;gene=rnt;product=ribonuclease T;protein_id=CAL21010.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2677009	2677560	.	+	.	ID=id5566;Note=Pfam match to entry PF00929 Exonuclease%2CExonuclease%2C score 138.10%2C E-value 1.6e-37;gbkey=misc_feature;gene=rnt;inference=protein motif:PF00929
AL590842.1	EMBL	gene	2677911	2678261	.	-	.	ID=gene2362;Name=YPO2383;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2383
AL590842.1	EMBL	CDS	2677911	2678261	.	-	0	ID=cds2320;Parent=gene2362;Dbxref=GOA:Q0WED9,InterPro:IPR002109,InterPro:IPR004480,InterPro:IPR012336,InterPro:IPR014434,UniProtKB/TrEMBL:Q0WED9,NCBI_GP:CAL21011.1;Name=CAL21011.1;Note=Similar to Escherichia coli hypothetical protein YdhD SW:YDHD_ECOLI (P37010) (115 aa) fasta scores: E(): 0%2C87.8%25 id in 115 aa%2C and to Vibrio cholerae hypothetical protein VC2044 vc2044 TR:Q9KQF4 (EMBL:AE004279) (110 aa) fasta scores: E(): 0%2C 78.2%25 id in 110 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004279;product=conserved hypothetical protein;protein_id=CAL21011.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2678271	2678274	.	-	.	ID=id5567;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2678361	2678582	.	-	.	ID=gene2363;Name=YPO2384;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2384
AL590842.1	EMBL	CDS	2678361	2678582	.	-	0	ID=cds2321;Parent=gene2363;Dbxref=UniProtKB/TrEMBL:Q0WED8,NCBI_GP:CAL21012.1;Name=CAL21012.1;Note=No significant database hits. Doubtful CDS;gbkey=CDS;product=hypothetical protein;protein_id=CAL21012.1;transl_table=11
AL590842.1	EMBL	gene	2678686	2679552	.	+	.	ID=gene2364;Name=YPO2385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2385
AL590842.1	EMBL	CDS	2678686	2679552	.	+	0	ID=cds2322;Parent=gene2364;Dbxref=InterPro:IPR000064,UniProtKB/TrEMBL:Q0WED7,NCBI_GP:CAL21013.1;Name=CAL21013.1;Note=Similar to Escherichia coli hypothetical protein YdhO SW:YDHO_ECOLI (P76190) (271 aa) fasta scores: E(): 8.5e-43%2C 52.613%25 id in 287 aa. C-terminal region is similar to the C-terminus of Escherichia coli hypothetical lipoprotein YafL SW:YAFL_ECOLI (Q47151) (249 aa) fasta scores: E(): 3.9e-26%2C 52.201%25 id in 159 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL21013.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2679178	2679528	.	+	.	ID=id5568;Note=Pfam match to entry PF00877 NLPC_P60%2C NLP/P60 family%2C score 196.80%2C E-value 3.3e-55;gbkey=misc_feature;inference=protein motif:PF00877
AL590842.1	EMBL	ribosome_entry_site	2679916	2679923	.	+	.	ID=id5569;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2679930	2680508	.	+	.	ID=gene2365;Name=sodB;gbkey=Gene;gene=sodB;gene_biotype=protein_coding;locus_tag=YPO2386
AL590842.1	EMBL	CDS	2679930	2680508	.	+	0	ID=cds2323;Parent=gene2365;Dbxref=GOA:Q0WED6,InterPro:IPR001189,InterPro:IPR019831,InterPro:IPR019832,InterPro:IPR019833,UniProtKB/TrEMBL:Q0WED6,NCBI_GP:CAL21014.1;Name=CAL21014.1;Note=Similar to Escherichia coli superoxide dismutase [Fe] SodB SW:SODF_ECOLI (P09157) (192 aa) fasta scores: E(): 0%2C 81.6%25 id in 190 aa%2C and to Vibrio cholerae superoxide dismutase [Fe] VC2045 TR:Q9KQF3 (EMBL:AE004279) (194 aa) fasta scores: E(): 0%2C 75.5%25 id in 192 aa;gbkey=CDS;gene=sodB;inference=similar to sequence:INSDC:AE004279;product=superoxide dismutase [Fe];protein_id=CAL21014.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2679933	2680505	.	+	.	ID=id5570;Note=Pfam match to entry PF00081 sodfe%2C Iron/manganese superoxide dismutases (SODM)%2C score 424.20%2C E-value 1.2e-123;gbkey=misc_feature;gene=sodB;inference=protein motif:PF00081
AL590842.1	EMBL	sequence_feature	2680398	2680421	.	+	.	ID=id5571;Note=PS00088 Manganese and iron superoxide dismutases signature.;gbkey=misc_feature;gene=sodB;inference=protein motif:ProSite:PS00088
AL590842.1	EMBL	ribosome_entry_site	2681019	2681023	.	+	.	ID=id5572;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2681035	2682060	.	+	.	ID=gene2366;Name=purR;gbkey=Gene;gene=purR;gene_biotype=protein_coding;locus_tag=YPO2387
AL590842.1	EMBL	CDS	2681035	2682060	.	+	0	ID=cds2324;Parent=gene2366;Dbxref=GOA:Q7CIS2,InterPro:IPR000843,InterPro:IPR010982,InterPro:IPR023588,InterPro:IPR028082,NCBI_GP:CAL21015.1;Name=CAL21015.1;Note=Similar to Escherichia coli purine nucleotide synthesis repressor PurR SW:PURR_ECOLI (P15039) (340 aa) fasta scores: E(): 0%2C 82.6%25 id in 340 aa%2C and to Salmonella typhimurium purine nucleotide synthesis repressor PurR SW:PURR_SALTY (O68446) (340 aa) fasta scores: E(): 0%2C 82.4%25 id in 340 aa;gbkey=CDS;gene=purR;product=purine nucleotide synthesis repressor;protein_id=CAL21015.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2681035	2681115	.	+	.	ID=id5573;Note=Pfam match to entry PF00356 lacI%2C Bacterial regulatory proteins%2C lacI family%2C score 47.30%2C E-value 5.8e-12;gbkey=misc_feature;gene=purR;inference=protein motif:PF00356
AL590842.1	EMBL	sequence_feature	2681038	2681103	.	+	.	ID=id5574;Note=Predicted helix-turn-helix motif with score 2032 (+6.11 SD) at aa 2-23%2C sequence ATIKDVAKHAGVSTTTVSHVIN;gbkey=misc_feature;gene=purR
AL590842.1	EMBL	sequence_feature	2681044	2681100	.	+	.	ID=id5575;Note=PS00356 Bacterial regulatory proteins%2C lacI family signature.;gbkey=misc_feature;gene=purR;inference=protein motif:ProSite:PS00356
AL590842.1	EMBL	sequence_feature	2681206	2681937	.	+	.	ID=id5576;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 158.40%2C E-value 1.2e-43;gbkey=misc_feature;gene=purR;inference=protein motif:PF00532
AL590842.1	EMBL	gene	2682149	2683081	.	-	.	ID=gene2367;Name=YPO2388;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2388
AL590842.1	EMBL	CDS	2682149	2683081	.	-	0	ID=cds2325;Parent=gene2367;Dbxref=GOA:Q7CIS3,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CIS3,NCBI_GP:CAL21016.1;Name=CAL21016.1;Note=Similar to Escherichia coli hypothetical transcriptional regulator YdhB SW:YDHB_ECOLI (P37598) (310 aa) fasta scores: E(): 0%2C 71.4%25 id in 301 aa%2C and to Vibrio cholerae LysR family transcriptional regulator VC2760 TR:Q9KNH9 (EMBL:AE004342) (302 aa) fasta scores: E(): 0%2C45.0%25 id in 300 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004342;product=LysR-family transcriptional regulatory protein;protein_id=CAL21016.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2682644	2683072	.	-	.	ID=id5577;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 156.30%2C E-value 5.1e-43;gbkey=misc_feature;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	2682938	2683030	.	-	.	ID=id5578;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00044
AL590842.1	EMBL	sequence_feature	2682968	2683033	.	-	.	ID=id5579;Note=Predicted helix-turn-helix motif with score 1135 (+3.05 SD) at aa 17-38%2C sequence GSFSAAAQELHRVPSAVSYTVR;gbkey=misc_feature
AL590842.1	EMBL	gene	2683371	2684573	.	+	.	ID=gene2368;Name=YPO2389;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2389
AL590842.1	EMBL	CDS	2683371	2684573	.	+	0	ID=cds2326;Parent=gene2368;Dbxref=GOA:Q7CIS4,InterPro:IPR004812,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q7CIS4,NCBI_GP:CAL21017.1;Name=CAL21017.1;Note=Similar to Escherichia coli bicyclomycin resistance protein YdhC TR:P77477 (EMBL:D90810) (403 aa) fasta scores: E(): 0%2C 64.9%25 id in 388 aa%2C and to Vibrio cholerae multidrug resistance protein vc2761 TR:Q9KNH8 (EMBL:AE004342) (409 aa) fasta scores: E(): 0%2C 43.3%25 id in 397 aa;gbkey=CDS;inference=similar to sequence:INSDC:D90810;product=putative drug resistance protein;protein_id=CAL21017.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2683383	2684561	.	+	.	ID=id5580;Note=Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporter%2C score -86.90%2C E-value 0.00092;gbkey=misc_feature;inference=protein motif:PF00083
AL590842.1	EMBL	sequence_feature	2683389	2683457	.	+	.	ID=id5581;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2683485	2683553	.	+	.	ID=id5582;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2683587	2683646	.	+	.	ID=id5583;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2683659	2683727	.	+	.	ID=id5584;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2683761	2683829	.	+	.	ID=id5585;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2683842	2683910	.	+	.	ID=id5586;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2684004	2684072	.	+	.	ID=id5587;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2684100	2684168	.	+	.	ID=id5588;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2684187	2684255	.	+	.	ID=id5589;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2684268	2684336	.	+	.	ID=id5590;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2684397	2684465	.	+	.	ID=id5591;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2684475	2684534	.	+	.	ID=id5592;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	ribosome_entry_site	2685044	2685047	.	+	.	ID=id5593;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2685053	2686204	.	+	.	ID=gene2369;Name=cdfA;gbkey=Gene;gene=cdfA;gene_biotype=protein_coding;gene_synonym=cfa;locus_tag=YPO2390
AL590842.1	EMBL	CDS	2685053	2686204	.	+	0	ID=cds2327;Parent=gene2369;Dbxref=GOA:Q7CIS5,InterPro:IPR003333,InterPro:IPR029063,UniProtKB/TrEMBL:Q7CIS5,NCBI_GP:CAL21018.1;Name=CAL21018.1;Note=Similar to Escherichia coli cyclopropane-fatty-acyl-phospholipid synthase Cfa SW:CFA_ECOLI (P30010) (381 aa) fasta scores: E(): 0%2C 77.2%25 id in 382 aa%2C and to Helicobacter pylori cyclopropane fatty acid synthase HP0416 TR:O25171 (EMBL:AE000557) (389 aa) fasta scores: E(): 0%2C 39.6%25 id in 359 aa;gbkey=CDS;gene=cdfA;inference=similar to sequence:INSDC:AE000557;product=cyclopropane-fatty-acyl-phospholipid synthase;protein_id=CAL21018.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2685695	2686168	.	+	.	ID=id5594;Note=Pfam match to entry PF02353 CMAS%2C %2C score 286.20%2CE-value 4.1e-82;gbkey=misc_feature;gene=cdfA;inference=protein motif:PF02353
AL590842.1	EMBL	gene	2686255	2686911	.	-	.	ID=gene2370;Name=ribC;gbkey=Gene;gene=ribC;gene_biotype=protein_coding;gene_synonym=ribE;locus_tag=YPO2391
AL590842.1	EMBL	CDS	2686255	2686911	.	-	0	ID=cds2328;Parent=gene2370;Dbxref=GOA:Q7CIS6,InterPro:IPR001783,InterPro:IPR017938,InterPro:IPR023366,InterPro:IPR026017,UniProtKB/TrEMBL:Q7CIS6,NCBI_GP:CAL21019.1;Name=CAL21019.1;Note=Similar to Escherichia coli riboflavin synthase alpha chain RibE SW:RISA_ECOLI (P29015) (213 aa) fasta scores: E(): 0%2C 79.5%25 id in 205 aa%2C and to Haemophilus influenzae riboflavin synthase alpha chain RibE SW:RISA_HAEIN (P45273) (204 aa) fasta scores: E(): 0%2C 64.0%25 id in 203 aa;gbkey=CDS;gene=ribC;product=riboflavin synthase alpha chain;protein_id=CAL21019.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2686357	2686614	.	-	.	ID=id5595;Note=Pfam match to entry PF00677 Lum_binding%2C Lumazine binding domain%2C score 148.30%2C E-value 1.3e-40;gbkey=misc_feature;gene=ribC;inference=protein motif:PF00677
AL590842.1	EMBL	sequence_feature	2686651	2686905	.	-	.	ID=id5596;Note=Pfam match to entry PF00677 Lum_binding%2C Lumazine binding domain%2C score 138.40%2C E-value 1.3e-37;gbkey=misc_feature;gene=ribC;inference=protein motif:PF00677
AL590842.1	EMBL	sequence_feature	2686657	2686695	.	-	.	ID=id5597;Note=PS00693 Riboflavin synthase alpha chain family signature.;gbkey=misc_feature;gene=ribC;inference=protein motif:ProSite:PS00693
AL590842.1	EMBL	ribosome_entry_site	2686920	2686923	.	-	.	ID=id5598;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2687160	2688533	.	+	.	ID=gene2371;Name=YPO2392;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2392
AL590842.1	EMBL	CDS	2687160	2688533	.	+	0	ID=cds2329;Parent=gene2371;Dbxref=GOA:Q8ZDZ8,InterPro:IPR002528,InterPro:IPR022913,NCBI_GP:CAL21020.1;Name=CAL21020.1;Note=Similar to Vibrio parahaemolyticus Na(+)-driven multidrug efflux pump protein NorM TR:O82855 (EMBL:AB010463) (456 aa) fasta scores: E(): 0%2C 57.6%25 id in 446 aa%2C and to Escherichia coli hypothetical protein YdhE SW:YDHE_ECOLI (P37340) (457 aa) fasta scores: E(): 0%2C 75.7%25 id in 456 aa;gbkey=CDS;inference=similar to sequence:INSDC:AB010463;product=putative transport protein;protein_id=CAL21020.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2687193	2687261	.	+	.	ID=id5599;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2687205	2687690	.	+	.	ID=id5600;Note=Pfam match to entry PF01554 UPF0013%2C Uncharacterized membrane protein family UPF0013%2C score 161.00%2C E-value 2.1e-44;gbkey=misc_feature;inference=protein motif:PF01554
AL590842.1	EMBL	sequence_feature	2687289	2687357	.	+	.	ID=id5601;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2687430	2687498	.	+	.	ID=id5602;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2687541	2687600	.	+	.	ID=id5603;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2687637	2687696	.	+	.	ID=id5604;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2687709	2687777	.	+	.	ID=id5605;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2687880	2687948	.	+	.	ID=id5606;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2687886	2688374	.	+	.	ID=id5607;Note=Pfam match to entry PF01554 UPF0013%2C Uncharacterized membrane protein family UPF0013%2C score 173.60%2C E-value 3.3e-48;gbkey=misc_feature;inference=protein motif:PF01554
AL590842.1	EMBL	sequence_feature	2688006	2688062	.	+	.	ID=id5608;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2688099	2688167	.	+	.	ID=id5609;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2688210	2688278	.	+	.	ID=id5610;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2688315	2688383	.	+	.	ID=id5611;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2688411	2688479	.	+	.	ID=id5612;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	tRNA	2688776	2688852	.	+	.	ID=rna51;Note=tRNA Val anticodon GAC%2C Cove score 96.37;gbkey=tRNA;product=tRNA-Val
AL590842.1	EMBL	exon	2688776	2688852	.	+	.	ID=id5613;Parent=rna51;Note=tRNA Val anticodon GAC%2C Cove score 96.37;gbkey=tRNA;product=tRNA-Val
AL590842.1	EMBL	tRNA	2688912	2688988	.	+	.	ID=rna52;Note=tRNA Val anticodon GAC%2C Cove score 83.12;gbkey=tRNA;product=tRNA-Val
AL590842.1	EMBL	exon	2688912	2688988	.	+	.	ID=id5614;Parent=rna52;Note=tRNA Val anticodon GAC%2C Cove score 83.12;gbkey=tRNA;product=tRNA-Val
AL590842.1	EMBL	gene	2689564	2690976	.	+	.	ID=gene2372;Name=pykF;gbkey=Gene;gene=pykF;gene_biotype=protein_coding;locus_tag=YPO2393
AL590842.1	EMBL	CDS	2689564	2690976	.	+	0	ID=cds2330;Parent=gene2372;Dbxref=GOA:Q7CIS8,InterPro:IPR001697,InterPro:IPR011037,InterPro:IPR015793,InterPro:IPR015794,InterPro:IPR015795,InterPro:IPR015806,InterPro:IPR015813,InterPro:IPR018209,UniProtKB/TrEMBL:Q7CIS8,NCBI_GP:CAL21021.1;Name=CAL21021.1;Note=Similar to Escherichia coli pyruvate kinase I PykF SW:KPY1_ECOLI (P14178) (470 aa) fasta scores: E(): 0%2C 86.6%25 id in 470 aa%2C and to Salmonella typhimurium pyruvate kinase I PykF SW:KPY1_SALTY (P77983) (470 aa) fasta scores: E(): 0%2C 86.6%25 id in 470 aa;gbkey=CDS;gene=pykF;product=pyruvate kinase I;protein_id=CAL21021.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2689567	2690973	.	+	.	ID=id5615;Note=Pfam match to entry PF00224 PK%2C Pyruvate kinase%2Cscore 838.20%2C E-value 2.8e-248;gbkey=misc_feature;gene=pykF;inference=protein motif:PF00224
AL590842.1	EMBL	sequence_feature	2690206	2690244	.	+	.	ID=id5616;Note=PS00110 Pyruvate kinase active site signature.;gbkey=misc_feature;gene=pykF;inference=protein motif:ProSite:PS00110
AL590842.1	EMBL	gene	2691297	2691533	.	+	.	ID=gene2373;Name=lpp;gbkey=Gene;gene=lpp;gene_biotype=protein_coding;gene_synonym=mlpA;locus_tag=YPO2394
AL590842.1	EMBL	CDS	2691297	2691533	.	+	0	ID=cds2331;Parent=gene2373;Dbxref=GOA:Q8ZDZ6,InterPro:IPR006817,InterPro:IPR016367,NCBI_GP:CAL21022.1;Name=CAL21022.1;Note=Similar to Escherichia coli major outer membrane lipoprotein precursor Lpp SW:MULI_ECOLI (P02937) (78 aa) fasta scores: E(): 1.6e-21%2C 87.2%25 id in 78 aa%2C and to Serratia marcescens major outer membrane lipoprotein precursor SW:MULI_SERMA (P02938) (77 aa) fasta scores: E(): 7.6e-22%2C 91.0%25 id in 78 aa;gbkey=CDS;gene=lpp;product=major outer membrane lipoprotein;protein_id=CAL21022.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2691327	2691359	.	+	.	ID=id5617;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=lpp;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	repeat_region	2691579	2692290	.	+	.	ID=id5618;Note=Contains a 'A' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	2691724	2692182	.	+	.	ID=gene2374;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO2395
AL590842.1	EMBL	CDS	2691724	2692182	.	+	0	ID=cds2332;Parent=gene2374;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL21023.1;Name=CAL21023.1;Note=Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL21023.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2691778	2692089	.	+	.	ID=id5619;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	repeat_region	2692678	2694631	.	+	.	ID=id5620;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	2692678	2692705	.	+	.	ID=id5621;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	2692764	2693786	.	+	.	ID=gene2375;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO2396
AL590842.1	EMBL	CDS	2692764	2693786	.	+	0	ID=cds2333;Parent=gene2375;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL21024.1;Name=CAL21024.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL21024.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2692788	2692871	.	+	.	ID=id5622;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	sequence_feature	2692815	2692880	.	+	.	ID=id5623;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	2693109	2693642	.	+	.	ID=id5624;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	gene	2693783	2694565	.	+	.	ID=gene2376;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO2397
AL590842.1	EMBL	CDS	2693783	2694565	.	+	0	ID=cds2334;Parent=gene2376;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL21025.1;Name=CAL21025.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL21025.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2693951	2694490	.	+	.	ID=id5625;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	2694110	2694133	.	+	.	ID=id5626;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	INVERTED	2694604	2694631	.	-	.	ID=id5627;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	pseudogene	2694635	2695628	.	-	.	ID=gene2377;Name=YPO2398;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO2398;pseudo=true
AL590842.1	EMBL	CDS	2694635	2695628	.	-	0	ID=cds2335;Parent=gene2377;Note=Similar to Escherichia coli hypothetical protein precursor YcfS SW:YCFS_ECOLI (P75954) (320 aa) fasta scores: E(): 0%2C 63.2%25 id in 304 aa%2C and to Escherichia coli hypothetical protein ErfK SW:ERFK_ECOLI (P39176) (310 aa) fasta scores: E(): 0%2C 53.2%25 id in 314 aa. This CDS is disrupted by the insertion of IS100 element. The insertion occurred near the C-terminus. It is not clear whether this insertion affects the function of the protein.;gbkey=CDS;product=putative exported protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	2695899	2696321	.	-	.	ID=gene2378;Name=YPO2399;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2399
AL590842.1	EMBL	CDS	2695899	2696321	.	-	0	ID=cds2336;Parent=gene2378;Dbxref=GOA:Q74TH2,InterPro:IPR003808,InterPro:IPR023939,NCBI_GP:CAL21027.1;Name=CAL21027.1;Note=Similar to Escherichia coli hypothetical protein YnhA SW:YNHA_ECOLI (P76194) (138 aa) fasta scores: E(): 0%2C68.1%25 id in 138 aa%2C and to Rhizobium etli hypothetical protein SW:YROS_RHIET (Q52742) (151 aa) fasta scores: E(): 5.2e-17%2C 41.5%25 id in 130 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21027.1;transl_table=11
AL590842.1	EMBL	gene	2696410	2697630	.	-	.	ID=gene2379;Name=YPO2400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2400
AL590842.1	EMBL	CDS	2696410	2697630	.	-	0	ID=cds2337;Parent=gene2379;Dbxref=GOA:Q8D0M6,InterPro:IPR000192,InterPro:IPR010970,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR020578,NCBI_GP:CAL21028.1;Name=CAL21028.1;Note=Similar to Escherichia coli selenocysteine lyase CsdB TR:P77444 (EMBL:AE000263) (406 aa) fasta scores: E(): 0%2C 70.4%25 id in 406 aa%2C and to Bacillus subtilis probable cysteine desulfurase Csd TR:O32164 (EMBL:Z99120) (406 aa) fasta scores: E(): 0%2C 48.6%25 id in 399 aa%3B~Similar to Escherichia coli selenocysteine lyase CsdB or SufS or b1680 TR:P77444 (EMBL:AE000263) (406 aa) fasta scores: E(): 0%2C 70.4%25 id in 406 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z99120;product=putative selenocysteine lyase;protein_id=CAL21028.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2696449	2697528	.	-	.	ID=id5628;Note=Pfam match to entry PF00266 aminotran_5%2CAminotransferases class-V%2C score 65.50%2C E-value 1.1e-15;gbkey=misc_feature;inference=protein motif:PF00266
AL590842.1	EMBL	sequence_feature	2696923	2696982	.	-	.	ID=id5629;Note=PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00595
AL590842.1	EMBL	gene	2697627	2698850	.	-	.	ID=gene2380;Name=YPO2401;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2401
AL590842.1	EMBL	CDS	2697627	2698850	.	-	0	ID=cds2338;Parent=gene2380;Dbxref=GOA:Q0WEC2,InterPro:IPR000825,InterPro:IPR011542,UniProtKB/TrEMBL:Q0WEC2,NCBI_GP:CAL21029.1;Name=CAL21029.1;Note=Similar to Escherichia coli hypothetical protein YnhC SW:YNHC_ECOLI (P77689) (423 aa) fasta scores: E(): 0%2C60.8%25 id in 403 aa%2C and to Synechocystis sp hypothetical protein SLR0076 SW:Y076_SYNY3 (Q55792) (453 aa) fasta scores: E(): 6.1e-31%2C 32.5%25 id in 385 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21029.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2697708	2698463	.	-	.	ID=id5630;Note=Pfam match to entry PF01458 UPF0051%2C Uncharacterized protein family (UPF0051)%2C score 291.00%2C E-value 1.5e-83;gbkey=misc_feature;inference=protein motif:PF01458
AL590842.1	EMBL	ribosome_entry_site	2697636	2697639	.	-	.	ID=id5631;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2698927	2699673	.	-	.	ID=gene2381;Name=YPO2402;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2402
AL590842.1	EMBL	CDS	2698927	2699673	.	-	0	ID=cds2339;Parent=gene2381;Dbxref=GOA:Q0WEC1,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR010230,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WEC1,NCBI_GP:CAL21030.1;Name=CAL21030.1;Note=Similar to Escherichia coli probable ATP-dependent transporter YnhD SW:YNHD_ECOLI (P77499) (248 aa) fasta scores: E(): 0%2C 82.7%25 id in 248 aa%2C and to Erwinia chrysanthemi putative ATPase essential for virulence SufC protein TR:CAC17126 (EMBL:AJ301654) (248 aa) fasta scores: E(): 0%2C 79.8%25 id in 248 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ301654;product=putative ATP-dependent transporter;protein_id=CAL21030.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2699008	2699595	.	-	.	ID=id5632;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 112.80%2C E-value 6.6e-30;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2699194	2699238	.	-	.	ID=id5633;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	2699551	2699574	.	-	.	ID=id5634;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2699859	2701370	.	-	.	ID=gene2382;Name=YPO2403;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2403
AL590842.1	EMBL	CDS	2699859	2701370	.	-	0	ID=cds2340;Parent=gene2382;Dbxref=GOA:Q7CIT1,InterPro:IPR000825,InterPro:IPR010231,UniProtKB/TrEMBL:Q7CIT1,NCBI_GP:CAL21031.1;Name=CAL21031.1;Note=Similar to Escherichia coli hypothetical protein YnhE SW:YNHE_ECOLI (P77522) (495 aa) fasta scores: E(): 0%2C84.1%25 id in 504 aa%2C and to Synechocystis sp hypothetical protein SLR0074 SW:Y074_SYNY3 (Q55790) (480 aa) fasta scores: E(): 0%2C 63.7%25 id in 487 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21031.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2699937	2700719	.	-	.	ID=id5635;Note=Pfam match to entry PF01458 UPF0051%2C Uncharacterized protein family (UPF0051)%2C score 500.50%2C E-value 1.3e-146;gbkey=misc_feature;inference=protein motif:PF01458
AL590842.1	EMBL	gene	2701385	2701756	.	-	.	ID=gene2383;Name=YPO2404;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2404
AL590842.1	EMBL	CDS	2701385	2701756	.	-	0	ID=cds2341;Parent=gene2383;Dbxref=GOA:Q0WEB9,InterPro:IPR000361,InterPro:IPR016092,InterPro:IPR017870,UniProtKB/TrEMBL:Q0WEB9,NCBI_GP:CAL21032.1;Name=CAL21032.1;Note=Similar to Escherichia coli hypothetical protein YdiC SW:YDIC_ECOLI (P77667) (122 aa) fasta scores: E(): 6.3e-29%2C 65.0%25 id in 117 aa%2C and to Escherichia coli protein YfhF SW:YFHF_ECOLI (P36539) (107 aa) fasta scores: E(): 3.3e-17%2C 46.7%25 id in 105 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21032.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2701391	2701705	.	-	.	ID=id5636;Note=Pfam match to entry PF01521 HesB-like%2C HesB-like domain%2C score 171.10%2C E-value 1.9e-47;gbkey=misc_feature;inference=protein motif:PF01521
AL590842.1	EMBL	sequence_feature	2701394	2701447	.	-	.	ID=id5637;Note=PS01152 Hypothetical hesB/yadR/yfhF family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01152
AL590842.1	EMBL	gene	2701934	2702092	.	-	.	ID=gene2384;Name=YPO2405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2405
AL590842.1	EMBL	CDS	2701934	2702092	.	-	0	ID=cds2342;Parent=gene2384;Dbxref=UniProtKB/TrEMBL:Q74TG6,NCBI_GP:CAL21033.1;Name=CAL21033.1;Note=No significant database hits. Doubtful CDS;gbkey=CDS;product=hypothetical protein;protein_id=CAL21033.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2702097	2702100	.	-	.	ID=id5638;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2702351	2702767	.	-	.	ID=gene2385;Name=YPO2406;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2406
AL590842.1	EMBL	CDS	2702351	2702767	.	-	0	ID=cds2343;Parent=gene2385;Dbxref=InterPro:IPR003736,InterPro:IPR006683,InterPro:IPR029069,UniProtKB/TrEMBL:Q7CIT2,NCBI_GP:CAL21034.1;Name=CAL21034.1;Note=Similar to Escherichia coli hypothetical protein YdiI TR:P77781 (EMBL:AE000263) (136 aa) fasta scores: E(): 0%2C 69.9%25 id in 136 aa%2C and to Escherichia coli hypothetical protein YbdB SW:YBDB_ECOLI (P15050) (137 aa) fasta scores: E(): 0%2C 61.8%25 id in 136 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE000263;product=conserved hypothetical protein;protein_id=CAL21034.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2702775	2702780	.	-	.	ID=id5639;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2702889	2705945	.	-	.	ID=gene2386;Name=YPO2407;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2407
AL590842.1	EMBL	CDS	2702889	2705945	.	-	0	ID=cds2344;Parent=gene2386;Dbxref=GOA:Q7CIT3,InterPro:IPR004113,InterPro:IPR006094,InterPro:IPR009051,InterPro:IPR016164,InterPro:IPR016166,InterPro:IPR016167,InterPro:IPR016169,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:Q7CIT3,NCBI_GP:CAL21035.1;Name=CAL21035.1;Note=Similar to Escherichia coli hypothetical protein YdiJ SW:YDIJ_ECOLI (P77748) (1018 aa) fasta scores: E(): 0%2C79.0%25 id in 1018 aa%2C and to Vibrio cholerae hypothetical protein VC1198 TR:Q9KSQ8 (EMBL:AE004199) (1021 aa) fasta scores: E(): 0%2C 62.1%25 id in 1018 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004199;product=conserved hypothetical protein;protein_id=CAL21035.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2703891	2703926	.	-	.	ID=id5640;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00198
AL590842.1	EMBL	sequence_feature	2704743	2704772	.	-	.	ID=id5641;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00339
AL590842.1	EMBL	sequence_feature	2705127	2705888	.	-	.	ID=id5642;Note=Pfam match to entry PF01565 FAD_binding_4%2C FAD binding domain%2C score 284.50%2C E-value 1.3e-81;gbkey=misc_feature;inference=protein motif:PF01565
AL590842.1	EMBL	sequence_feature	2705427	2705450	.	-	.	ID=id5643;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2706566	2707669	.	+	.	ID=gene2387;Name=YPO2408;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2408
AL590842.1	EMBL	CDS	2706566	2707669	.	+	0	ID=cds2345;Parent=gene2387;Dbxref=InterPro:IPR002549,UniProtKB/TrEMBL:Q0WEB5,NCBI_GP:CAL21036.1;Name=CAL21036.1;Note=Similar to Escherichia coli hypothetical protein YdiK SW:YDIK_ECOLI (P77175) (370 aa) fasta scores: E(): 0%2C63.7%25 id in 358 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) hypothetical protein BU123 TR:BAB12841 (EMBL:AP001118) (360 aa) fasta scores: E(): 0%2C 50.9%25 id in 348 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001118;product=putative membrane protein;protein_id=CAL21036.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2706602	2707606	.	+	.	ID=id5644;Note=Pfam match to entry PF01594 UPF0118%2C Domain of unknown function DUF20%2C score 170.00%2C E-value 3.9e-47;gbkey=misc_feature;inference=protein motif:PF01594
AL590842.1	EMBL	sequence_feature	2706602	2706661	.	+	.	ID=id5645;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2706674	2706727	.	+	.	ID=id5646;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2706761	2706829	.	+	.	ID=id5647;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2707040	2707108	.	+	.	ID=id5648;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2707211	2707279	.	+	.	ID=id5649;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2707307	2707375	.	+	.	ID=id5650;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2707412	2707471	.	+	.	ID=id5651;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2707514	2707582	.	+	.	ID=id5652;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2708268	2710652	.	-	.	ID=gene2388;Name=pps;gbkey=Gene;gene=pps;gene_biotype=protein_coding;gene_synonym=ppsA;locus_tag=YPO2409
AL590842.1	EMBL	CDS	2708268	2710652	.	-	0	ID=cds2346;Parent=gene2388;Dbxref=GOA:Q7CIT4,InterPro:IPR000121,InterPro:IPR002192,InterPro:IPR006319,InterPro:IPR008279,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR015813,InterPro:IPR018274,InterPro:IPR023151,UniProtKB/TrEMBL:Q7CIT4,NCBI_GP:CAL21037.1;Name=CAL21037.1;Note=Similar to Escherichia coli phosphoenolpyruvate synthase PpsA SW:PPSA_ECOLI (P23538) (791 aa) fasta scores: E(): 0%2C 83.6%25 id in 792 aa%2C and to Vibrio cholerae phosphoenolpyruvate synthase VCA0987 TR:Q9KKW3 (EMBL:AE004425) (803 aa) fasta scores: E(): 0%2C 70.0%25 id in 786 aa;gbkey=CDS;gene=pps;inference=similar to sequence:INSDC:AE004425;product=phosphoenolpyruvate synthase;protein_id=CAL21037.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2708391	2709479	.	-	.	ID=id5653;Note=Pfam match to entry PF00391 PEP-utilizers%2CPEP-utilizing enzymes%2C score 542.20%2C E-value 3.6e-159;gbkey=misc_feature;gene=pps;inference=protein motif:PF00391
AL590842.1	EMBL	sequence_feature	2708508	2708564	.	-	.	ID=id5654;Note=PS00742 PEP-utilizing enzymes signature 2.;gbkey=misc_feature;gene=pps;inference=protein motif:ProSite:PS00742
AL590842.1	EMBL	sequence_feature	2709369	2709404	.	-	.	ID=id5655;Note=PS00370 PEP-utilizing enzymes phosphorylation site signature.;gbkey=misc_feature;gene=pps;inference=protein motif:ProSite:PS00370
AL590842.1	EMBL	sequence_feature	2709552	2710628	.	-	.	ID=id5656;Note=Pfam match to entry PF01326 PPDK_N_term%2C Pyruvate phosphate dikinase%2C PEP/pyruvate binding domain%2C score 515.50%2C E-value 3.9e-151;gbkey=misc_feature;gene=pps;inference=protein motif:PF01326
AL590842.1	EMBL	ribosome_entry_site	2710661	2710666	.	-	.	ID=id5657;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	ribosome_entry_site	2710978	2710983	.	+	.	ID=id5658;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2710989	2711810	.	+	.	ID=gene2389;Name=YPO2410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2410
AL590842.1	EMBL	CDS	2710989	2711810	.	+	0	ID=cds2347;Parent=gene2389;Dbxref=GOA:Q8ZDY4,InterPro:IPR005177,InterPro:IPR008917,InterPro:IPR026530,NCBI_GP:CAL21038.1;Name=CAL21038.1;Note=Similar to Escherichia coli hypothetical protein YdiA SW:YDIA_ECOLI (P03822) (277 aa) fasta scores: E(): 0%2C80.6%25 id in 273 aa%2C and to Erwinia herbicola hypothetical protein YdiA SW:YDIA_ERWHE (O54458) (290 aa) fasta scores: E(): 0%2C 79.4%25 id in 272 aa;gbkey=CDS;product=Conserved hypothetical protein;protein_id=CAL21038.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2711445	2711468	.	+	.	ID=id5659;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2711967	2713013	.	+	.	ID=gene2390;Name=aroH;gbkey=Gene;gene=aroH;gene_biotype=protein_coding;locus_tag=YPO2411
AL590842.1	EMBL	CDS	2711967	2713013	.	+	0	ID=cds2348;Parent=gene2390;Dbxref=GOA:Q7CIT5,InterPro:IPR006218,InterPro:IPR006219,InterPro:IPR013785,UniProtKB/TrEMBL:Q7CIT5,NCBI_GP:CAL21039.1;Name=CAL21039.1;Note=Similar to Escherichia coli phospho-2-dehydro-3-deoxyheptonate aldolase%2C Trp-sensitive AroH SW:AROH_ECOLI (P00887) (348 aa) fasta scores: E(): 0%2C79.9%25 id in 348 aa%2C and to Erwinia herbicola phospho-2-dehydro-3-deoxyheptonate aldolase%2C Trp-sensitive AroH SW:AROH_ERWHE (O54459) (348 aa) fasta scores: E(): 0%2C74.4%25 id in 348 aa. Similar to YPO3286 (358 aa) fasta scores: E(): 0%2C 53.4%25 identity in 343 aa overlap and YPO1130 (338 aa) fasta scores: E(): 0%2C 53.6%25 identity in 330 aa overlap;gbkey=CDS;gene=aroH;product=phospho-2-dehydro-3-deoxyheptonate aldolase;protein_id=CAL21039.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2711973	2713001	.	+	.	ID=id5660;Note=Pfam match to entry PF00793 DAHP_synth_1%2C DAHP synthetase family%2C score 800.10%2C E-value 8.2e-237;gbkey=misc_feature;gene=aroH;inference=protein motif:PF00793
AL590842.1	EMBL	pseudogene	2713182	2714645	.	-	.	ID=gene2391;Name=YPO2412;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO2412;pseudo=true
AL590842.1	EMBL	CDS	2713182	2714645	.	-	0	ID=cds2349;Parent=gene2391;Note=Similar to Escherichia coli hypothetical protein YdiU SW:YDIU_ECOLI (P77649) (478 aa) fasta scores: E(): 0%2C64.8%25 id in 477 aa%2C and to Vibrio cholerae hypothetical protein VC1931 TR:Q9KQR7 (EMBL:AE004269) (508 aa) fasta scores: E(): 0%2C 49.6%25 id in 486 aa. There is a nonsense mutation (ochre) at position 245. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=similar to sequence:INSDC:AE004269;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	2714697	2715713	.	-	.	ID=gene2392;Name=lplA;gbkey=Gene;gene=lplA;gene_biotype=protein_coding;locus_tag=YPO2414
AL590842.1	EMBL	CDS	2714697	2715713	.	-	0	ID=cds2350;Parent=gene2392;Dbxref=GOA:Q8ZDY2,InterPro:IPR004143,InterPro:IPR004562,InterPro:IPR019491,InterPro:IPR023741,NCBI_GP:CAL21041.1;Name=CAL21041.1;Note=Similar to Escherichia coli lipoate-protein ligase A LplA SW:LPLA_ECOLI (P32099) (337 aa) fasta scores: E(): 0%2C74.8%25 id in 337 aa%2C and to Vibrio cholerae lipoate-protein ligase A VC1388 TR:Q9KS71 (EMBL:AE004218) (338 aa) fasta scores: E(): 0%2C 60.3%25 id in 335 aa;gbkey=CDS;gene=lplA;inference=similar to sequence:INSDC:AE004218;product=putative lipoate-protein ligase A;protein_id=CAL21041.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2715720	2715723	.	-	.	ID=id5661;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2715838	2716302	.	-	.	ID=gene2393;Name=nlpC;gbkey=Gene;gene=nlpC;gene_biotype=protein_coding;locus_tag=YPO2415
AL590842.1	EMBL	CDS	2715838	2716302	.	-	0	ID=cds2351;Parent=gene2393;Dbxref=InterPro:IPR000064,UniProtKB/TrEMBL:Q7CIT7,NCBI_GP:CAL21042.1;Name=CAL21042.1;Note=Similar to Escherichia coli probable lipoprotein NlpC precursor SW:NLPC_ECOLI (P23898) (154 aa) fasta scores: E(): 0%2C 68.6%25 id in 153 aa%2C and to Pasteurella multocida hypothetical protein PM0627 TR:AAK02711 (EMBL:AE006099) (159 aa) fasta scores: E(): 2.8e-31%2C 55.5%25 id in 146 aa;gbkey=CDS;gene=nlpC;inference=similar to sequence:INSDC:AE006099;product=putative lipoprotein;protein_id=CAL21042.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2715841	2716179	.	-	.	ID=id5662;Note=Pfam match to entry PF00877 NLPC_P60%2C NLP/P60 family%2C score 175.60%2C E-value 8.3e-49;gbkey=misc_feature;gene=nlpC;inference=protein motif:PF00877
AL590842.1	EMBL	sequence_feature	2716192	2716269	.	-	.	ID=id5663;Note=PS00430 TonB-dependent receptor proteins signature 1.;gbkey=misc_feature;gene=nlpC;inference=protein motif:ProSite:PS00430
AL590842.1	EMBL	gene	2716582	2716968	.	-	.	ID=gene2394;Name=YPO2416;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2416
AL590842.1	EMBL	CDS	2716582	2716968	.	-	0	ID=cds2352;Parent=gene2394;Dbxref=GOA:Q8ZDY0,InterPro:IPR000620,InterPro:IPR022832,NCBI_GP:CAL21043.1;Name=CAL21043.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA3558 TR:AAG06946 (EMBL:AE004776) (137 aa) fasta scores: E(): 3.8e-15%2C 43.4%25 id in 129 aa%2C and to Salmonella typhimurium hypothetical protein TR:O52329 (EMBL:AF036677) (125 aa) fasta scores: E(): 4.3e-11%2C 37.3%25 id in 118 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF036677;product=putative membrane protein;protein_id=CAL21043.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2716603	2716659	.	-	.	ID=id5664;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2716675	2716740	.	-	.	ID=id5665;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2716762	2716827	.	-	.	ID=id5666;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2716888	2716953	.	-	.	ID=id5667;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2716965	2717309	.	-	.	ID=gene2395;Name=YPO2417;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2417
AL590842.1	EMBL	CDS	2716965	2717309	.	-	0	ID=cds2353;Parent=gene2395;Dbxref=GOA:Q74TF8,InterPro:IPR000620,InterPro:IPR022883,NCBI_GP:CAL21044.1;Name=CAL21044.1;Note=Similar to Salmonella typhi hypothetical protein YfbW TR:P81891 (EMBL:AF071082) (111 aa) fasta scores: E(): 8.8e-17%2C 50.0%25 id in 106 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA3557 TR:AAG06945 (EMBL:AE004776) (115 aa) fasta scores: E(): 4e-12%2C 42.7%25 id in 110 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF071082;product=putative membrane protein;protein_id=CAL21044.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2716971	2717021	.	-	.	ID=id5668;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2717043	2717108	.	-	.	ID=id5669;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2717139	2717195	.	-	.	ID=id5670;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2717306	2718970	.	-	.	ID=gene2396;Name=YPO2418;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2418
AL590842.1	EMBL	CDS	2717306	2718970	.	-	0	ID=cds2354;Parent=gene2396;Dbxref=GOA:Q8ZDX9,InterPro:IPR003342,InterPro:IPR022839,NCBI_GP:CAL21045.1;Name=CAL21045.1;Note=Similar to Escherichia coli hypothetical protein TR:P76473 (EMBL:AE000315) (550 aa) fasta scores: E(): 0%2C53.9%25 id in 538 aa%2C and to Salmonella typhimurium hypothetical protein TR:O52327 (EMBL:AF036677) (548 aa) fasta scores: E(): 0%2C 54.0%25 id in 544 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF036677;product=dolichyl-phosphate-mannose-protein mannosyltransferase-family protein;protein_id=CAL21045.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2717672	2717737	.	-	.	ID=id5671;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2717708	2718760	.	-	.	ID=id5672;Note=Pfam match to entry PF02366 PMT%2C %2C score 88.90%2CE-value 1e-22;gbkey=misc_feature;inference=protein motif:PF02366
AL590842.1	EMBL	sequence_feature	2717759	2717809	.	-	.	ID=id5673;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2717855	2717920	.	-	.	ID=id5674;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2717960	2718025	.	-	.	ID=id5675;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2718038	2718088	.	-	.	ID=id5676;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2718128	2718193	.	-	.	ID=id5677;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2718287	2718352	.	-	.	ID=id5678;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2718389	2718454	.	-	.	ID=id5679;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2718563	2718628	.	-	.	ID=id5680;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2718650	2718715	.	-	.	ID=id5681;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2718899	2718949	.	-	.	ID=id5682;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2718967	2719872	.	-	.	ID=gene2397;Name=YPO2419;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2419
AL590842.1	EMBL	CDS	2718967	2719872	.	-	0	ID=cds2355;Parent=gene2397;Dbxref=GOA:Q7CIT9,InterPro:IPR002509,InterPro:IPR011330,InterPro:IPR023557,NCBI_GP:CAL21046.1;Name=CAL21046.1;Note=Similar to Salmonella typhimurium hypothetical protein YfbH TR:O52326 (EMBL:AF036677) (299 aa) fasta scores: E(): 0%2C 61.9%25 id in 294 aa%2C and to Escherichia coli hypothetical protein yfbH TR:P76472 (EMBL:AE000315) (296 aa) fasta scores: E(): 0%2C 61.9%25 id in 294 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF036677;product=conserved hypothetical protein;protein_id=CAL21046.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2718977	2718982	.	-	.	ID=id5683;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2719869	2721872	.	-	.	ID=gene2398;Name=YPO2420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2420
AL590842.1	EMBL	CDS	2719869	2721872	.	-	0	ID=cds2356;Parent=gene2398;Dbxref=GOA:Q8ZDX8,InterPro:IPR001509,InterPro:IPR002376,InterPro:IPR005793,InterPro:IPR011034,InterPro:IPR016040,InterPro:IPR021168,NCBI_GP:CAL21047.1;Name=CAL21047.1;Note=Similar to Escherichia coli hypothetical protein YfbG SW:YFBG_ECOLI (P77398) (660 aa) fasta scores: E(): 0%2C70.8%25 id in 661 aa%2C and to Salmonella typhimurium hypothetical protein YfbG SW:YFBG_SALTY (O52325) (660 aa) fasta scores: E(): 0%2C 70.8%25 id in 660 aa;gbkey=CDS;product=probable formyl transferase;protein_id=CAL21047.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2721342	2721734	.	-	.	ID=id5684;Note=Pfam match to entry PF00551 formyl_transf%2C Formyl transferase%2C score 69.90%2C E-value 5.5e-19;gbkey=misc_feature;inference=protein motif:PF00551
AL590842.1	EMBL	gene	2721869	2722852	.	-	.	ID=gene2399;Name=pmrF;gbkey=Gene;gene=pmrF;gene_biotype=protein_coding;locus_tag=YPO2421
AL590842.1	EMBL	CDS	2721869	2722852	.	-	0	ID=cds2357;Parent=gene2399;Dbxref=GOA:Q8ZDX7,InterPro:IPR001173,InterPro:IPR022857,InterPro:IPR029044,NCBI_GP:CAL21048.1;Name=CAL21048.1;Note=Similar to Salmonella typhimurium polymixin resistance protein PmrF TR:O52324 (EMBL:AF036677) (327 aa) fasta scores: E(): 0%2C 78.0%25 id in 314 aa%2C and to Escherichia coli hypothetical protein YfbF SW:YFBF_ECOLI (P77757) (322 aa) fasta scores: E(): 0%2C 77.8%25 id in 316 aa;gbkey=CDS;gene=pmrF;inference=similar to sequence:INSDC:AF036677;product=probable glycosyl transferase;protein_id=CAL21048.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2721977	2722042	.	-	.	ID=id5685;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=pmrF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2722073	2722138	.	-	.	ID=id5686;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=pmrF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2722328	2722822	.	-	.	ID=id5687;Note=Pfam match to entry PF00535 Glycos_transf_2%2CGlycosyl transferases%2C score 52.70%2C E-value 7.9e-12;gbkey=misc_feature;gene=pmrF;inference=protein motif:PF00535
AL590842.1	EMBL	gene	2722839	2723993	.	-	.	ID=gene2400;Name=YPO2422;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2422
AL590842.1	EMBL	CDS	2722839	2723993	.	-	0	ID=cds2358;Parent=gene2400;Dbxref=GOA:Q93PE0,InterPro:IPR000653,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR022850,NCBI_GP:CAL21049.1;Name=CAL21049.1;Note=Similar to Salmonella typhimurium hypothetical protein YfbE TR:O52323 (EMBL:AF036677) (385 aa) fasta scores: E(): 0%2C 69.0%25 id in 378 aa%2C and to Escherichia coli hypothetical protein YfbE SW:YFBE_ECOLI (P77690) (390 aa) fasta scores: E(): 0%2C 69.3%25 id in 378 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF036677;product=conserved hypothteical protein;protein_id=CAL21049.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2722872	2723966	.	-	.	ID=id5688;Note=Pfam match to entry PF01041 DegT_DnrJ_EryC1%2CDegT/DnrJ/EryC1/StrS family%2C score 573.00%2C E-value 1.9e-168;gbkey=misc_feature;inference=protein motif:PF01041
AL590842.1	EMBL	gene	2724343	2725104	.	-	.	ID=gene2401;Name=btuD;gbkey=Gene;gene=btuD;gene_biotype=protein_coding;locus_tag=YPO2423
AL590842.1	EMBL	CDS	2724343	2725104	.	-	0	ID=cds2359;Parent=gene2401;Dbxref=GOA:Q8ZDX6,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR023693,InterPro:IPR027417,NCBI_GP:CAL21050.1;Name=CAL21050.1;Note=Similar to Escherichia coli vitamin B12 transport ATP-binding protein BtuD SW:BTUD_ECOLI (P06611) (249 aa) fasta scores: E(): 0%2C 45.6%25 id in 237 aa%2C and to Vibrio cholerae putative vitamin B12 ABC transporter%2C ATP-binding protein BtuD TR:Q9KSL1 (EMBL:AE004203) (251 aa) fasta scores: E(): 8.8e-31%2C 44.2%25 id in 233 aa;gbkey=CDS;gene=btuD;inference=similar to sequence:INSDC:AE004203;product=putative vitamin B12 transport ATP-binding protein;protein_id=CAL21050.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2724469	2725032	.	-	.	ID=id5689;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 123.20%2C E-value 5e-33;gbkey=misc_feature;gene=btuD;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2724673	2724717	.	-	.	ID=id5690;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=btuD;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	2724988	2725011	.	-	.	ID=id5691;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=btuD;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2725126	2725680	.	-	.	ID=gene2402;Name=btuE;gbkey=Gene;gene=btuE;gene_biotype=protein_coding;locus_tag=YPO2424
AL590842.1	EMBL	CDS	2725126	2725680	.	-	0	ID=cds2360;Parent=gene2402;Dbxref=GOA:Q7CIU3,InterPro:IPR000889,InterPro:IPR012336,InterPro:IPR029759,UniProtKB/TrEMBL:Q7CIU3,NCBI_GP:CAL21051.1;Name=CAL21051.1;Note=Similar to Escherichia coli vitamin B12 transport periplasmic protein BtuE SW:BTUE_ECOLI (P06610) (183 aa) fasta scores: E(): 0%2C 59.9%25 id in 182 aa%2C and to Neisseria meningitidis (serogroup A)%2C glutathione peroxidase homologue GpxA SW:GPXA_NEIMA (P52036) (177 aa) fasta scores: E(): 9.2e-26%2C 45.0%25 id in 169 aa;gbkey=CDS;gene=btuE;product=putative vitamin B12 transport protein;protein_id=CAL21051.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2725345	2725668	.	-	.	ID=id5692;Note=Pfam match to entry PF00255 GSHPx%2C Glutathione peroxidases%2C score 178.80%2C E-value 8.9e-50;gbkey=misc_feature;gene=btuE;inference=protein motif:PF00255
AL590842.1	EMBL	ribosome_entry_site	2725690	2725694	.	-	.	ID=id5693;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2725750	2726757	.	-	.	ID=gene2403;Name=btuC;gbkey=Gene;gene=btuC;gene_biotype=protein_coding;locus_tag=YPO2425
AL590842.1	EMBL	CDS	2725750	2726757	.	-	0	ID=cds2361;Parent=gene2403;Dbxref=GOA:Q8ZDX4,InterPro:IPR000522,InterPro:IPR023691,InterPro:IPR029022,NCBI_GP:CAL21052.1;Name=CAL21052.1;Note=Similar to Escherichia coli vitamin B12 transport system permease protein BtuC SW:BTUC_ECOLI (P06609) (326 aa) fasta scores: E(): 0%2C 68.0%25 id in 325 aa%2C and to Vibrio cholerae putative vitamin B12 ABC transporter%2C permease protein BtuC TR:Q9KSL2 (EMBL:AE004203) (335 aa) fasta scores: E(): 0%2C 49.1%25 id in 330 aa;gbkey=CDS;gene=btuC;inference=similar to sequence:INSDC:AE004203;product=puative vitamin B12 transport system permease protein;protein_id=CAL21052.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2725768	2726640	.	-	.	ID=id5694;Note=Pfam match to entry PF01032 FecCD_family%2C FecCD transport family%2C score 339.50%2C E-value 3.8e-98;gbkey=misc_feature;gene=btuC;inference=protein motif:PF01032
AL590842.1	EMBL	sequence_feature	2725771	2725827	.	-	.	ID=id5695;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=btuC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2725843	2725908	.	-	.	ID=id5696;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=btuC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2725969	2726034	.	-	.	ID=id5697;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=btuC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2726236	2726301	.	-	.	ID=id5698;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=btuC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2726341	2726406	.	-	.	ID=id5699;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=btuC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2726419	2726475	.	-	.	ID=id5700;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=btuC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2726497	2726562	.	-	.	ID=id5701;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=btuC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2726623	2726688	.	-	.	ID=id5702;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=btuC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	ribosome_entry_site	2726763	2726766	.	-	.	ID=id5703;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2726984	2727442	.	-	.	ID=gene2404;Name=YPO2426;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2426
AL590842.1	EMBL	CDS	2726984	2727442	.	-	0	ID=cds2362;Parent=gene2404;Dbxref=InterPro:IPR019638,UniProtKB/TrEMBL:Q7CIU4,NCBI_GP:CAL21053.1;Name=CAL21053.1;Note=Similar to Escherichia coli hypothetical protein YpeC SW:YPEC_ECOLI (P76527) (108 aa) fasta scores: E(): 0.00066%2C 31.3%25 id in 115 aa%2C and to Escherichia coli hypothetical protein YaaX or b0005 SW:YAAX_ECOLI (P75616) (98 aa) fasta scores: E(): 7.6e-05%2C 28.7%25 id in 129 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL21053.1;transl_table=11
AL590842.1	EMBL	gene	2727776	2728072	.	-	.	ID=gene2405;Name=hid;gbkey=Gene;gene=hid;gene_biotype=protein_coding;gene_synonym=himA,ihfA;locus_tag=YPO2427
AL590842.1	EMBL	CDS	2727776	2728072	.	-	0	ID=cds2363;Parent=gene2405;Dbxref=GOA:Q8ZDX2,InterPro:IPR000119,InterPro:IPR005684,InterPro:IPR010992,InterPro:IPR020816,NCBI_GP:CAL21054.1;Name=CAL21054.1;Note=Similar to Escherichia coli integration host factor alpha-subunit IhfA SW:IHFA_ECOLI (P06984) (99 aa) fasta scores: E(): 0%2C 92.9%25 id in 98 aa%2C and to Serratia marcescens integration host factor alpha-subunit IhfA SW:IHFA_SERMA (P23302) (99 aa) fasta scores: E(): 0%2C 97.9%25 id in 97 aa;gbkey=CDS;gene=hid;product=integration host factor alpha-subunit;protein_id=CAL21054.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2727797	2728066	.	-	.	ID=id5704;Note=Pfam match to entry PF00216 Bac_DNA_binding%2CBacterial DNA-binding protein%2C score 170.90%2C E-value 4.1e-48;gbkey=misc_feature;gene=hid;inference=protein motif:PF00216
AL590842.1	EMBL	sequence_feature	2727872	2727931	.	-	.	ID=id5705;Note=PS00045 Bacterial histone-like DNA-binding proteins signature.;gbkey=misc_feature;gene=hid;inference=protein motif:ProSite:PS00045
AL590842.1	EMBL	gene	2728077	2730464	.	-	.	ID=gene2406;Name=pheT;gbkey=Gene;gene=pheT;gene_biotype=protein_coding;locus_tag=YPO2428
AL590842.1	EMBL	CDS	2728077	2730464	.	-	0	ID=cds2364;Parent=gene2406;Dbxref=GOA:Q8ZDX1,InterPro:IPR002547,InterPro:IPR004532,InterPro:IPR005121,InterPro:IPR005146,InterPro:IPR005147,InterPro:IPR009061,InterPro:IPR012340,InterPro:IPR020825,NCBI_GP:CAL21055.1;Name=CAL21055.1;Note=Similar to Escherichia coli phenylalanyl-tRNA synthetase beta chain PheT SW:SYFB_ECOLI (P07395) (795 aa) fasta scores: E(): 0%2C 83.4%25 id in 795 aa%2C and to Haemophilus influenzae phenylalanyl-tRNA synthetase beta chain PheT SW:SYFB_HAEIN (P43820) (795 aa) fasta scores: E(): 0%2C 64.7%25 id in 795 aa;gbkey=CDS;gene=pheT;product=phenylalanyl-tRNA synthetase beta chain;protein_id=CAL21055.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2729712	2730002	.	-	.	ID=id5706;Note=Pfam match to entry PF01588 tRNA_bind%2C Putative tRNA binding domain%2C score 47.20%2C E-value 3.6e-10;gbkey=misc_feature;gene=pheT;inference=protein motif:PF01588
AL590842.1	EMBL	sequence_feature	2730027	2730332	.	-	.	ID=id5707;Note=Pfam match to entry PF01588 tRNA_bind%2C Putative tRNA binding domain%2C score 51.90%2C E-value 1.4e-11;gbkey=misc_feature;gene=pheT;inference=protein motif:PF01588
AL590842.1	EMBL	ribosome_entry_site	2728083	2728086	.	-	.	ID=id5708;gbkey=regulatory;gene=pheT;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	ribosome_entry_site	2730471	2730475	.	-	.	ID=id5709;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2730478	2731461	.	-	.	ID=gene2407;Name=pheS;gbkey=Gene;gene=pheS;gene_biotype=protein_coding;locus_tag=YPO2429
AL590842.1	EMBL	CDS	2730478	2731461	.	-	0	ID=cds2365;Parent=gene2407;Dbxref=GOA:Q8ZDX0,InterPro:IPR002319,InterPro:IPR004188,InterPro:IPR004529,InterPro:IPR006195,InterPro:IPR010978,InterPro:IPR022911,NCBI_GP:CAL21056.1;Name=CAL21056.1;Note=Similar to Escherichia coli phenylalanyl-tRNA synthetase alpha chain PheS SW:SYFA_ECOLI (P08312) (327 aa) fasta scores: E(): 0%2C 90.2%25 id in 327 aa%2C and to Vibrio cholerae phenylalanyl-tRNA synthetase alpha chain PheS TR:Q9KSN7 (EMBL:AE004202) (327 aa) fasta scores: E(): 0%2C76.1%25 id in 327 aa;gbkey=CDS;gene=pheS;inference=similar to sequence:INSDC:AE004202;product=phenylalanyl-tRNA synthetase alpha chain;protein_id=CAL21056.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2730523	2731143	.	-	.	ID=id5710;Note=Pfam match to entry PF01409 tRNA-synt_2d%2C tRNA synthetases class II (F)%2C score 400.20%2C E-value 1.9e-116;gbkey=misc_feature;gene=pheS;inference=protein motif:PF01409
AL590842.1	EMBL	sequence_feature	2730547	2730576	.	-	.	ID=id5711;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.;gbkey=misc_feature;gene=pheS;inference=protein motif:ProSite:PS00339
AL590842.1	EMBL	sequence_feature	2730832	2730882	.	-	.	ID=id5712;Note=PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.;gbkey=misc_feature;gene=pheS;inference=protein motif:ProSite:PS00179
AL590842.1	EMBL	ribosome_entry_site	2731473	2731476	.	-	.	ID=id5713;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2731818	2731862	.	-	.	ID=gene2408;Name=ecs2422;gbkey=Gene;gene=ecs2422;gene_biotype=protein_coding;gene_synonym=pheM,phtL;locus_tag=YPO2429a
AL590842.1	EMBL	CDS	2731818	2731862	.	-	0	ID=cds2366;Parent=gene2408;Dbxref=GOA:Q7CIU5,UniProtKB/TrEMBL:Q7CIU5,NCBI_GP:CAL21057.1;Name=CAL21057.1;Note=Highly similar to several phenylalanyl-tRNA synthease leader peptides including: Escherichia coli O157:H7 ECS2422 TR:BAB35845 (EMBL:AP002558) (14 aa) fasta scores: E(): 0.0016%2C 76.923%25 id in 13 aa and Escherichia coli pheM SW:LPF2_ECOLI (P06985) (14 aa) fasta scores: E(): 0.0016%2C 76.923%25 id in 13 aa;gbkey=CDS;gene=ecs2422;inference=similar to sequence:INSDC:AP002558;product=phenylalanyl-tRNA synthetase operon leader peptide;protein_id=CAL21057.1;transl_table=11
AL590842.1	EMBL	gene	2731960	2732316	.	-	.	ID=gene2409;Name=pdzA;gbkey=Gene;gene=pdzA;gene_biotype=protein_coding;gene_synonym=rplT;locus_tag=YPO2430
AL590842.1	EMBL	CDS	2731960	2732316	.	-	0	ID=cds2367;Parent=gene2409;Dbxref=GOA:Q8ZDW8,InterPro:IPR005813,NCBI_GP:CAL21058.1;Name=CAL21058.1;Note=Similar to Escherichia coli 50S ribosomal protein L20 RplT SW:RL20_ECOLI (P02421) (117 aa) fasta scores: E(): 0%2C 97.4%25 id in 117 aa%2C and to Haemophilus influenzae 50S ribosomal protein L20 RplT SW:RL20_HAEIN (P44358) (116 aa) fasta scores: E(): 0%2C 95.7%25 id in 116 aa;gbkey=CDS;gene=pdzA;product=50S ribosomal protein L20;protein_id=CAL21058.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2731990	2732313	.	-	.	ID=id5714;Note=Pfam match to entry PF00453 Ribosomal_L20%2C Ribosomal protein L20%2C score 238.80%2C E-value 4.8e-75;gbkey=misc_feature;gene=pdzA;inference=protein motif:PF00453
AL590842.1	EMBL	sequence_feature	2732107	2732157	.	-	.	ID=id5715;Note=PS00937 Ribosomal protein L20 signature.;gbkey=misc_feature;gene=pdzA;inference=protein motif:ProSite:PS00937
AL590842.1	EMBL	ribosome_entry_site	2732323	2732327	.	-	.	ID=id5716;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2732354	2732551	.	-	.	ID=gene2410;Name=rpmI;gbkey=Gene;gene=rpmI;gene_biotype=protein_coding;locus_tag=YPO2431
AL590842.1	EMBL	CDS	2732354	2732551	.	-	0	ID=cds2368;Parent=gene2410;Dbxref=GOA:Q8ZDW7,InterPro:IPR001706,InterPro:IPR018265,InterPro:IPR021137,NCBI_GP:CAL21059.1;Name=CAL21059.1;Note=Similar to Escherichia coli 50S ribosomal protein L35 RpmI SW:RL35_ECOLI (P07085) (64 aa) fasta scores: E(): 1.8e-25%2C 89.1%25 id in 64 aa%2C and to Haemophilus influenzae 50S ribosomal protein L35 RpmI SW:RL35_HAEIN (P45519) (64 aa) fasta scores: E(): 1.2e-21%2C 81.3%25 id in 64 aa;gbkey=CDS;gene=rpmI;product=50S ribosomal protein L35;protein_id=CAL21059.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2732366	2732542	.	-	.	ID=id5717;Note=Pfam match to entry PF01632 Ribosomal_L35p%2CRibosomal protein L35%2C score 121.30%2C E-value 1.9e-32;gbkey=misc_feature;gene=rpmI;inference=protein motif:PF01632
AL590842.1	EMBL	sequence_feature	2732507	2732542	.	-	.	ID=id5718;Note=PS00936 Ribosomal protein L35 signature.;gbkey=misc_feature;gene=rpmI;inference=protein motif:ProSite:PS00936
AL590842.1	EMBL	gene	2732648	2733199	.	-	.	ID=gene2411;Name=fit;gbkey=Gene;gene=fit;gene_biotype=protein_coding;gene_synonym=infC;locus_tag=YPO2432
AL590842.1	EMBL	CDS	2732648	2733199	.	-	0	ID=cds2369;Parent=gene2411;Dbxref=GOA:Q8ZDW6,InterPro:IPR001288,InterPro:IPR019813,InterPro:IPR019814,InterPro:IPR019815,NCBI_GP:CAL21060.1;Name=CAL21060.1;Note=Similar to Serratia marcescens translation initiation factor IF-3 InfC SW:IF3_SERMA (P33320) (183 aa) fasta scores: E(): 0%2C 94.0%25 id in 183 aa%2C and to Escherichia coli translation initiation factor IF-3 InfC SW:IF3_ECOLI (P02999) (180 aa) fasta scores: E(): 0%2C 89.1%25 id in 183 aa. The start codon is an AUU%2C as with the E. coli IF-3 InfC;gbkey=CDS;gene=fit;product=translation initiation factor IF-3;protein_id=CAL21060.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2732657	2732998	.	-	.	ID=id5719;Note=Pfam match to entry PF00707 IF3%2C Translation initiation factor IF-3%2C score 242.10%2C E-value 3.5e-80;gbkey=misc_feature;gene=fit;inference=protein motif:PF00707
AL590842.1	EMBL	gene	2733203	2735131	.	-	.	ID=gene2412;Name=thrS;gbkey=Gene;gene=thrS;gene_biotype=protein_coding;locus_tag=YPO2433
AL590842.1	EMBL	CDS	2733203	2735131	.	-	0	ID=cds2370;Parent=gene2412;Dbxref=GOA:Q8ZDW5,InterPro:IPR002314,InterPro:IPR002320,InterPro:IPR004095,InterPro:IPR004154,InterPro:IPR006195,InterPro:IPR012675,InterPro:IPR012676,InterPro:IPR012947,InterPro:IPR018163,NCBI_GP:CAL21061.1;Name=CAL21061.1;Note=Similar to Escherichia coli threonyl-tRNA synthetase ThrS SW:SYT_ECOLI (P00955) (642 aa) fasta scores: E(): 0%2C88.3%25 id in 642 aa%2C and to Haemophilus influenzae threonyl-tRNA synthetase ThrS SW:SYT_HAEIN (P43014) (643 aa) fasta scores: E(): 0%2C 77.9%25 id in 642 aa;gbkey=CDS;gene=thrS;product=threonyl-tRNA synthetase;protein_id=CAL21061.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2733281	2734414	.	-	.	ID=id5720;Note=Pfam match to entry PF00587 tRNA-synt_2b%2C tRNA synthetase class II (G%2C H%2C P%2C S and T)%2C score 474.10%2CE-value 1.2e-138;gbkey=misc_feature;gene=thrS;inference=protein motif:PF00587
AL590842.1	EMBL	sequence_feature	2733560	2733589	.	-	.	ID=id5721;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.;gbkey=misc_feature;gene=thrS;inference=protein motif:ProSite:PS00339
AL590842.1	EMBL	sequence_feature	2733983	2734048	.	-	.	ID=id5722;Note=PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.;gbkey=misc_feature;gene=thrS;inference=protein motif:ProSite:PS00179
AL590842.1	EMBL	ribosome_entry_site	2733208	2733212	.	-	.	ID=id5723;gbkey=regulatory;gene=thrS;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	ribosome_entry_site	2735138	2735142	.	-	.	ID=id5724;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	ribosome_entry_site	2735510	2735513	.	+	.	ID=id5725;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2735522	2735734	.	+	.	ID=gene2413;Name=YPO2434;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2434
AL590842.1	EMBL	CDS	2735522	2735734	.	+	0	ID=cds2371;Parent=gene2413;Dbxref=InterPro:IPR025309,UniProtKB/TrEMBL:Q7CIU6,NCBI_GP:CAL21062.1;Name=CAL21062.1;Note=Similar to Caulobacter crescentus hypothetical protein CC0128 TR:Q9ABU2 (EMBL:AE005687) (66 aa) fasta scores: E(): 6.5e-05%2C 38.983%25 id in 59 aa%2C and to the C-terminal region of Rhizobium loti hypothetical protein MLL6859 TR:BAB53070 (EMBL:AP003010) (109 aa) fasta scores: E(): 0.0025%2C 34.783%25 id in 69 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP003010;product=conserved hypothetical protein;protein_id=CAL21062.1;transl_table=11
AL590842.1	EMBL	gene	2736044	2736421	.	+	.	ID=gene2414;Name=YPO2435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2435
AL590842.1	EMBL	CDS	2736044	2736421	.	+	0	ID=cds2372;Parent=gene2414;Dbxref=UniProtKB/TrEMBL:Q0WE89,NCBI_GP:CAL21063.1;Name=CAL21063.1;Note=No significant database matches;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL21063.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2736266	2736319	.	+	.	ID=id5726;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2736362	2736415	.	+	.	ID=id5727;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2736493	2736807	.	-	.	ID=gene2415;Name=YPO2436;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2436
AL590842.1	EMBL	CDS	2736493	2736807	.	-	0	ID=cds2373;Parent=gene2415;Dbxref=UniProtKB/TrEMBL:Q0WE88,NCBI_GP:CAL21064.1;Name=CAL21064.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21064.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2737051	2737054	.	+	.	ID=id5728;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2737063	2737746	.	+	.	ID=gene2416;Name=marC;gbkey=Gene;gene=marC;gene_biotype=protein_coding;locus_tag=YPO2437
AL590842.1	EMBL	CDS	2737063	2737746	.	+	0	ID=cds2374;Parent=gene2416;Dbxref=GOA:Q74TE6,InterPro:IPR002771,UniProtKB/TrEMBL:Q74TE6,NCBI_GP:CAL21065.1;Name=CAL21065.1;Note=Similar to Escherichia coli multiple antibiotic resistance protein MarC SW:MARC_ECOLI (P31123) (221 aa) fasta scores: E(): 0%2C 73.8%25 id in 221 aa%2C and to Salmonella typhimurium multiple antibiotic resistance protein MarC SW:MARC_SALTY (Q56068) (221 aa) fasta scores: E(): 0%2C 72.9%25 id in 221 aa;gbkey=CDS;gene=marC;inference=protein motif:TMHMM:2.0;product=multiple antibiotic resistance protein;protein_id=CAL21065.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2737084	2737719	.	+	.	ID=id5729;Note=Pfam match to entry PF01914 UPF0056%2C Uncharacterised protein family UPF0056%2C score 268.20%2C E-value 1.1e-76;gbkey=misc_feature;gene=marC;inference=protein motif:PF01914
AL590842.1	EMBL	sequence_feature	2737201	2737269	.	+	.	ID=id5730;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=marC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2737282	2737350	.	+	.	ID=id5731;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=marC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2737417	2737485	.	+	.	ID=id5732;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=marC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2737528	2737596	.	+	.	ID=id5733;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=marC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2737654	2737722	.	+	.	ID=id5734;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=marC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2737868	2738530	.	-	.	ID=gene2417;Name=YPO2438;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2438
AL590842.1	EMBL	CDS	2737868	2738530	.	-	0	ID=cds2375;Parent=gene2417;Dbxref=GOA:Q7CIU7,InterPro:IPR000189,InterPro:IPR008258,InterPro:IPR023346,UniProtKB/TrEMBL:Q7CIU7,NCBI_GP:CAL21066.1;Name=CAL21066.1;Note=Similar to Escherichia coli membrane-bound lytic murein transglycosylase E MltE SW:MLTE_ECOLI (P76009) (241 aa) fasta scores: E(): 0%2C 49.8%25 id in 211 aa%2C and to the C-terminal region of Escherichia coli membrane-bound lytic murein transglycosylase C MltC SW:MLTC_ECOLI (P52066) (359 aa) fasta scores: E(): 1.8e-28%2C 45.8%25 id in 179 aa;gbkey=CDS;product=putative membrane-bound lytic murein transglycosylase;protein_id=CAL21066.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2737979	2738365	.	-	.	ID=id5735;Note=Pfam match to entry PF01464 SLT%2C Transglycosylase SLT domain%2C score 131.80%2C E-value 1.3e-35;gbkey=misc_feature;inference=protein motif:PF01464
AL590842.1	EMBL	sequence_feature	2738222	2738308	.	-	.	ID=id5736;Note=PS00922 Prokaryotic transglycosylases signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00922
AL590842.1	EMBL	sequence_feature	2738480	2738512	.	-	.	ID=id5737;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	2738739	2739710	.	+	.	ID=gene2418;Name=yfeA;gbkey=Gene;gene=yfeA;gene_biotype=protein_coding;locus_tag=YPO2439
AL590842.1	EMBL	CDS	2738739	2739710	.	+	0	ID=cds2376;Parent=gene2418;Dbxref=GOA:Q56952,InterPro:IPR006127,InterPro:IPR006128,InterPro:IPR006129,NCBI_GP:CAL21067.1;Name=CAL21067.1;Note=Previously sequenced as Yersinia pestis periplasmic-binding protein YfeA TR:Q56952 (EMBL:U50597) (322 aa) fasta scores: E(): 0%2C 100.0%25 id in 322 aa. Similar to Haemophilus influenzae putative periplasmic iron-binding protein Hi0362 precursor hi0362 TR:Q57449 (EMBL:U32720) (293 aa) fasta scores: E(): 0%2C 74.9%25 id in 271 aa;gbkey=CDS;gene=yfeA;inference=similar to sequence:INSDC:U50597;product=periplasmic-binding protein;protein_id=CAL21067.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2738799	2739704	.	+	.	ID=id5738;Note=Pfam match to entry PF01297 Lipoprotein_4%2C Adhesion lipoprotein%2C score 523.30%2C E-value 1.8e-153;gbkey=misc_feature;gene=yfeA;inference=protein motif:PF01297
AL590842.1	EMBL	gene	2739707	2740597	.	+	.	ID=gene2419;Name=yfeB;gbkey=Gene;gene=yfeB;gene_biotype=protein_coding;locus_tag=YPO2440
AL590842.1	EMBL	CDS	2739707	2740597	.	+	0	ID=cds2377;Parent=gene2419;Dbxref=GOA:Q56953,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,NCBI_GP:CAL21068.1;Name=CAL21068.1;Note=Previously sequenced as Yersinia pestis ATP-binding protein YfeB TR:Q56953 (EMBL:U50597) (296 aa) fasta scores: E(): 0%2C 100.0%25 id in 296 aa;gbkey=CDS;gene=yfeB;inference=similar to sequence:INSDC:U50597;product=ATP-binding transport protein;protein_id=CAL21068.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2739815	2740372	.	+	.	ID=id5739;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 168.70%2C E-value 9.8e-47;gbkey=misc_feature;gene=yfeB;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2739836	2739859	.	+	.	ID=id5740;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=yfeB;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	2740145	2740189	.	+	.	ID=id5741;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=yfeB;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	ribosome_entry_site	2740579	2740585	.	+	.	ID=id5742;gbkey=regulatory;gene=yfeB;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2740597	2741481	.	+	.	ID=gene2420;Name=yfeC;gbkey=Gene;gene=yfeC;gene_biotype=protein_coding;locus_tag=YPO2441
AL590842.1	EMBL	CDS	2740597	2741481	.	+	0	ID=cds2378;Parent=gene2420;Dbxref=GOA:Q56954,InterPro:IPR001626,InterPro:IPR029022,NCBI_GP:CAL21069.1;Name=CAL21069.1;Note=Previously sequenced as Yersinia pestis chelated iron transport system membrane protein YfeC SW:YFEC_YERPE (Q56954) (294 aa) fasta scores: E(): 0%2C 100.0%25 id in 294 aa;gbkey=CDS;gene=yfeC;inference=protein motif:TMHMM:2.0;product=chelated iron transport system membrane protein;protein_id=CAL21069.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2740624	2741394	.	+	.	ID=id5743;Note=Pfam match to entry PF00950 ABC-3%2C ABC 3 transport family%2C score 450.20%2C E-value 1.7e-131;gbkey=misc_feature;gene=yfeC;inference=protein motif:PF00950
AL590842.1	EMBL	sequence_feature	2740639	2740707	.	+	.	ID=id5744;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=yfeC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2740768	2740836	.	+	.	ID=id5745;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=yfeC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2740879	2740947	.	+	.	ID=id5746;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=yfeC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2741008	2741076	.	+	.	ID=id5747;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=yfeC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2741134	2741202	.	+	.	ID=id5748;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=yfeC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2741251	2741319	.	+	.	ID=id5749;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=yfeC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2741347	2741415	.	+	.	ID=id5750;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=yfeC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	ribosome_entry_site	2741466	2741470	.	+	.	ID=id5751;gbkey=regulatory;gene=yfeC;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2741478	2742371	.	+	.	ID=gene2421;Name=yfeD;gbkey=Gene;gene=yfeD;gene_biotype=protein_coding;locus_tag=YPO2442
AL590842.1	EMBL	CDS	2741478	2742371	.	+	0	ID=cds2379;Parent=gene2421;Dbxref=GOA:Q56955,InterPro:IPR001626,InterPro:IPR029022,NCBI_GP:CAL21070.1;Name=CAL21070.1;Note=Previously sequenced as Yersinia pestis chelated iron transport system membrane protein YfeD SW:YFED_YERPE (Q56955) (297 aa) fasta scores: E(): 0%2C 99.7%25 id in 297 aa;gbkey=CDS;gene=yfeD;inference=protein motif:TMHMM:2.0;product=chelated iron transport system membrane protein;protein_id=CAL21070.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2741514	2742284	.	+	.	ID=id5752;Note=Pfam match to entry PF00950 ABC-3%2C ABC 3 transport family%2C score 512.60%2C E-value 2.8e-150;gbkey=misc_feature;gene=yfeD;inference=protein motif:PF00950
AL590842.1	EMBL	sequence_feature	2741538	2741606	.	+	.	ID=id5753;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=yfeD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2741664	2741732	.	+	.	ID=id5754;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=yfeD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2741766	2741825	.	+	.	ID=id5755;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=yfeD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2741868	2741936	.	+	.	ID=id5756;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=yfeD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2741994	2742053	.	+	.	ID=id5757;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=yfeD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2742063	2742131	.	+	.	ID=id5758;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=yfeD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2742150	2742209	.	+	.	ID=id5759;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=yfeD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2742219	2742287	.	+	.	ID=id5760;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=yfeD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2742439	2742651	.	+	.	ID=gene2422;Name=YPO2443;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2443
AL590842.1	EMBL	CDS	2742439	2742651	.	+	0	ID=cds2380;Parent=gene2422;Dbxref=UniProtKB/TrEMBL:Q7CIU8,NCBI_GP:CAL21071.1;Name=CAL21071.1;Note=No significant database matches. Doubtful CDS;gbkey=CDS;product=putative membrane protein;protein_id=CAL21071.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2742520	2742588	.	+	.	ID=id5761;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2742676	2743551	.	+	.	ID=gene2423;Name=YPO2444;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2444
AL590842.1	EMBL	CDS	2742676	2743551	.	+	0	ID=cds2381;Parent=gene2423;Dbxref=GOA:Q7CIU9,InterPro:IPR011009,InterPro:IPR016477,UniProtKB/TrEMBL:Q7CIU9,NCBI_GP:CAL21072.1;Name=CAL21072.1;Note=Similar to Escherichia coli hypothetical protein YniA TR:P77739 (EMBL:AE000267) (286 aa) fasta scores: E(): 0%2C 68.7%25 id in 284 aa%2C and to Vibrio cholerae hypothetical protein VC1539 TR:Q9KRU5 (EMBL:AE004232) (288 aa) fasta scores: E(): 0%2C 48.6%25 id in 286 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004232;product=conserved hypothetical protein;protein_id=CAL21072.1;transl_table=11
AL590842.1	EMBL	gene	2743680	2744234	.	-	.	ID=gene2424;Name=yfeE;gbkey=Gene;gene=yfeE;gene_biotype=protein_coding;locus_tag=YPO2445
AL590842.1	EMBL	CDS	2743680	2744234	.	-	0	ID=cds2382;Parent=gene2424;Dbxref=GOA:Q56956,InterPro:IPR025229,NCBI_GP:CAL21073.1;Name=CAL21073.1;Note=Previously sequenced as Yersinia pestis putative regulator of yfe inorganic iron transport locus%2C YfeE SW:YFEE_YERPE (Q56956) (184 aa) fasta scores: E(): 0%2C100.0%25 id in 184 aa;gbkey=CDS;gene=yfeE;inference=protein motif:TMHMM:2.0;product=putative yfeABCD locus regulator;protein_id=CAL21073.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2743710	2743775	.	-	.	ID=id5762;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=yfeE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2743923	2743988	.	-	.	ID=id5763;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=yfeE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2744118	2744183	.	-	.	ID=id5764;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=yfeE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	ribosome_entry_site	2744240	2744245	.	-	.	ID=id5765;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2744645	2745310	.	+	.	ID=gene2425;Name=YPO2446;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2446
AL590842.1	EMBL	CDS	2744645	2745310	.	+	0	ID=cds2383;Parent=gene2425;Dbxref=GOA:Q0WE78,InterPro:IPR006439,InterPro:IPR023198,InterPro:IPR023214,UniProtKB/TrEMBL:Q0WE78,NCBI_GP:CAL21074.1;Name=CAL21074.1;Note=Similar to Escherichia coli hypothetical protein YniC SW:YNIC_ECOLI (P77247) (222 aa) fasta scores: E(): 0%2C65.9%25 id in 220 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21074.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2744663	2745226	.	+	.	ID=id5766;Note=Pfam match to entry PF00702 Hydrolase%2C haloacid dehalogenase-like hydrolase%2C score 154.30%2C E-value 2.1e-42;gbkey=misc_feature;inference=protein motif:PF00702
AL590842.1	EMBL	repeat_region	2745526	2746840	.	-	.	ID=id5767;Note=insertion sequence:IS285;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	2745526	2745554	.	+	.	ID=id5768;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	2745561	2746769	.	-	.	ID=gene2426;Name=y1062;gbkey=Gene;gene=y1062;gene_biotype=protein_coding;gene_synonym=ypmt1.80C;locus_tag=YPO2447
AL590842.1	EMBL	CDS	2745561	2746769	.	-	0	ID=cds2384;Parent=gene2426;Dbxref=GOA:O68779,InterPro:IPR001207,UniProtKB/TrEMBL:O68779,NCBI_GP:CAL21075.1;Name=CAL21075.1;Note=Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa.;gbkey=CDS;gene=y1062;inference=similar to sequence:INSDC:AF053947;product=transposase for the IS285 insertion element;protein_id=CAL21075.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2745633	2746769	.	-	.	ID=id5769;Note=Pfam match to entry PF00872 Transpo_mutator%2CTransposase%2C Mutator family%2C score 430.40%2C E-value 1.6e-125;gbkey=misc_feature;gene=y1062;inference=protein motif:PF00872
AL590842.1	EMBL	sequence_feature	2746002	2746076	.	-	.	ID=id5770;Note=PS01007 Transposases%2C Mutator family%2C signature.;gbkey=misc_feature;gene=y1062;inference=protein motif:ProSite:PS01007
AL590842.1	EMBL	INVERTED	2746812	2746840	.	-	.	ID=id5771;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	2747130	2748245	.	+	.	ID=gene2427;Name=solA;gbkey=Gene;gene=solA;gene_biotype=protein_coding;gene_synonym=soxA;locus_tag=YPO2448
AL590842.1	EMBL	CDS	2747130	2748245	.	+	0	ID=cds2385;Parent=gene2427;Dbxref=GOA:P58526,InterPro:IPR006076,InterPro:IPR023493,NCBI_GP:CAL21076.1;Name=CAL21076.1;Note=Similar to Escherichia coli putative sarcosine oxidase SolA SW:SAOX_ECOLI (P40874) (372 aa) fasta scores: E(): 0%2C 64.5%25 id in 372 aa%2C and to Arthrobacter sp sarcosine oxidase SoxA SW:SAOX_ARTSP (P40873) (388 aa) fasta scores: E(): 0%2C 41.2%25 id in 376 aa%2C and to Bacillus sp. sarcosine oxidase SW:SAOX_BACSN (P23342) (387 aa) fasta scores: E(): 0%2C 41.6%25 id in 375 aa;gbkey=CDS;gene=solA;product=putative sarcosine oxidase;protein_id=CAL21076.1;transl_table=11
AL590842.1	EMBL	gene	2748512	2749126	.	+	.	ID=gene2428;Name=YPO2449;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2449
AL590842.1	EMBL	CDS	2748512	2749126	.	+	0	ID=cds2386;Parent=gene2428;Dbxref=GOA:Q0WE75,InterPro:IPR000792,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:Q0WE75,NCBI_GP:CAL21077.1;Name=CAL21077.1;Note=Similar to Salmonella typhi colanic acid capsular biosynthesis activation protein A RcsA SW:RCSA_SALTI (Q56083) (207 aa) fasta scores: E(): 2.2e-06%2C 26.6%25 id in 207 aa%2C and to Escherichia coli colanic acid capsular biosynthesis activation protein A RcsA SW:RCSA_ECOLI (P24210) (207 aa) fasta scores: E(): 0.00027%2C 25.2%25 id in 210 aa. Contains a 2x PIPLTESVS repeat between codons 92 and 110;gbkey=CDS;product=putative LuxR-family regulatory protein;protein_id=CAL21077.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2748929	2749117	.	+	.	ID=id5772;Note=Pfam match to entry PF00196 GerE%2C Bacterial regulatory proteins%2C luxR family%2C score 26.80%2C E-value 8.2e-05;gbkey=misc_feature;inference=protein motif:PF00196
AL590842.1	EMBL	sequence_feature	2748983	2749048	.	+	.	ID=id5773;Note=Predicted helix-turn-helix motif with score 1791 (+5.29 SD) at aa 158-179%2C sequence MPNYRIARKLNISGSTVYSHKR;gbkey=misc_feature
AL590842.1	EMBL	repeat_region	2748784	2748843	.	+	.	ID=id5774;Note=repeat region with 2xGCCTATTCCTCTGACAGAATCCGTATCAAT repeat.;gbkey=repeat_region
AL590842.1	EMBL	gene	2749698	2750756	.	-	.	ID=gene2429;Name=YPO2450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2450
AL590842.1	EMBL	CDS	2749698	2750756	.	-	0	ID=cds2387;Parent=gene2429;Dbxref=InterPro:IPR002549,UniProtKB/TrEMBL:Q74TB8,NCBI_GP:CAL21078.1;Name=CAL21078.1;Note=Similar to Escherichia coli hypothetical protein YdgG SW:YDGG_ECOLI (P77535) (344 aa) fasta scores: E(): 0%2C60.0%25 id in 340 aa%2C and to Escherichia coli hypothetical protein YhhT SW:YHHT_ECOLI (P37622) (349 aa) fasta scores: E(): 0%2C 48.4%25 id in 343 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL21078.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2749770	2750720	.	-	.	ID=id5775;Note=Pfam match to entry PF01594 UPF0118%2C Domain of unknown function DUF20%2C score 270.60%2C E-value 2e-77;gbkey=misc_feature;inference=protein motif:PF01594
AL590842.1	EMBL	sequence_feature	2749839	2749904	.	-	.	ID=id5776;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2749944	2750009	.	-	.	ID=id5777;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2750025	2750090	.	-	.	ID=id5778;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2750112	2750177	.	-	.	ID=id5779;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2750268	2750333	.	-	.	ID=id5780;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2750505	2750570	.	-	.	ID=id5781;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2750616	2750717	.	-	.	ID=id5782;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2750905	2751972	.	-	.	ID=gene2430;Name=YPO2451;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2451
AL590842.1	EMBL	CDS	2750905	2751972	.	-	0	ID=cds2388;Parent=gene2430;Dbxref=InterPro:IPR001763,InterPro:IPR020936,NCBI_GP:CAL21079.1;Name=CAL21079.1;Note=Similar to Escherichia coli hypothetical protein YceA SW:YCEA_ECOLI (P24188) (350 aa) fasta scores: E(): 0%2C73.9%25 id in 348 aa%2C and to Chlamydia trachomatis hypothetical protein YceA TR:O84632 (EMBL:AE001333) (327 aa) fasta scores: E(): 6.3e-29%2C 36.6%25 id in 317 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE001333;product=conserved hypothetical protein;protein_id=CAL21079.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2751271	2751564	.	-	.	ID=id5783;Note=Pfam match to entry PF00581 Rhodanese%2CRhodanese-like domain%2C score 101.20%2C E-value 2e-26;gbkey=misc_feature;inference=protein motif:PF00581
AL590842.1	EMBL	sequence_feature	2751658	2751681	.	-	.	ID=id5784;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2752016	2752144	.	-	.	ID=gene2431;Name=YPO2452;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2452
AL590842.1	EMBL	CDS	2752016	2752144	.	-	0	ID=cds2389;Parent=gene2431;Dbxref=UniProtKB/TrEMBL:Q0WE72,NCBI_GP:CAL21080.1;Name=CAL21080.1;Note=No significant database hits. Doubtful CDS;gbkey=CDS;product=hypothetical protein;protein_id=CAL21080.1;transl_table=11
AL590842.1	EMBL	gene	2752331	2752693	.	-	.	ID=gene2432;Name=YPO2453;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2453
AL590842.1	EMBL	CDS	2752331	2752693	.	-	0	ID=cds2390;Parent=gene2432;Dbxref=UniProtKB/TrEMBL:Q0WE71,NCBI_GP:CAL21081.1;Name=CAL21081.1;Note=No significant database matches;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL21081.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2752358	2752414	.	-	.	ID=id5785;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2752427	2752477	.	-	.	ID=id5786;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2752825	2752986	.	-	.	ID=gene2433;Name=YPO2454;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2454
AL590842.1	EMBL	CDS	2752825	2752986	.	-	0	ID=cds2391;Parent=gene2433;Dbxref=UniProtKB/TrEMBL:Q7CJ29,NCBI_GP:CAL21082.1;Name=CAL21082.1;Note=No significant database hits. Doubtful CDS;gbkey=CDS;product=hypothetical protein;protein_id=CAL21082.1;transl_table=11
AL590842.1	EMBL	gene	2753023	2753721	.	-	.	ID=gene2434;Name=YPO2455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2455
AL590842.1	EMBL	CDS	2753023	2753721	.	-	0	ID=cds2392;Parent=gene2434;Dbxref=GOA:Q7CJ30,InterPro:IPR000620,UniProtKB/TrEMBL:Q7CJ30,NCBI_GP:CAL21083.1;Name=CAL21083.1;Note=Similar to the N-terminal regions of Bacillus subtilis hypothetical protein YvbV SW:YVBV_BACSU (O32256) (305 aa) fasta scores: E(): 4.9e-07%2C 27.0%25 id in 204 aa%2Cand Escherichia coli hypothetical protein YedA SW:YEDA_ECOLI (P09185) (306 aa) fasta scores: E(): 2.4e-05%2C25.8%25 id in 209 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL21083.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2753032	2753097	.	-	.	ID=id5787;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2753137	2753202	.	-	.	ID=id5788;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2753230	2753634	.	-	.	ID=id5789;Note=Pfam match to entry PF00892 DUF6%2C Integral membrane protein DUF6%2C score 71.10%2C E-value 2.4e-17;gbkey=misc_feature;inference=protein motif:PF00892
AL590842.1	EMBL	sequence_feature	2753233	2753289	.	-	.	ID=id5790;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2753305	2753361	.	-	.	ID=id5791;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2753377	2753442	.	-	.	ID=id5792;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2753479	2753544	.	-	.	ID=id5793;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2753605	2753661	.	-	.	ID=id5794;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2754119	2754775	.	+	.	ID=gene2435;Name=ypeI;gbkey=Gene;gene=ypeI;gene_biotype=protein_coding;locus_tag=YPO2456
AL590842.1	EMBL	CDS	2754119	2754775	.	+	0	ID=cds2393;Parent=gene2435;Dbxref=GOA:Q7CJ31,InterPro:IPR001690,InterPro:IPR016181,InterPro:IPR018311,UniProtKB/TrEMBL:Q7CJ31,NCBI_GP:CAL21084.1;Name=CAL21084.1;Note=Previously sequenced as Yersinia pestis%2Cquorum-sensing signal generator%2C N-acylhomoserine lactone synthase%2C YpeI TR:Q9RH44 (EMBL:AF071401) (214 aa) fasta scores: E(): 0%2C 100.0%25 id in 214 aa. Similar to Erwinia chrysanthemi autoinducer synthesis protein ExpI SW:EXPI_ERWCH (Q47187) (212 aa) fasta scores: E(): 0%2C 54.8%25 id in 210 aa. Similar to YPO0984 (46.9%25 identity in 213 aa overlap);gbkey=CDS;gene=ypeI;inference=similar to sequence:INSDC:AF071401;product=N-acylhomoserine lactone synthase YpeI;protein_id=CAL21084.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2754152	2754694	.	+	.	ID=id5795;Note=Pfam match to entry PF00765 Autoind_synth%2CAutoinducer synthetase%2C score 393.10%2C E-value 2.8e-114;gbkey=misc_feature;gene=ypeI;inference=protein motif:PF00765
AL590842.1	EMBL	sequence_feature	2754197	2754274	.	+	.	ID=id5796;Note=PS00949 Autoinducers synthetases family signature.;gbkey=misc_feature;gene=ypeI;inference=protein motif:ProSite:PS00949
AL590842.1	EMBL	gene	2754768	2755505	.	-	.	ID=gene2436;Name=ypeR;gbkey=Gene;gene=ypeR;gene_biotype=protein_coding;locus_tag=YPO2457
AL590842.1	EMBL	CDS	2754768	2755505	.	-	0	ID=cds2394;Parent=gene2436;Dbxref=GOA:Q9RH45,InterPro:IPR000792,InterPro:IPR005143,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:Q9RH45,NCBI_GP:CAL21085.1;Name=CAL21085.1;Note=Previously sequenced as Yersinia pestis quorum-sensing transcriptional activator YpeR TR:Q9RH45 (EMBL:AF071401) (245 aa) fasta scores: E(): 0%2C 100.0%25 id in 245 aa. Similar to Erwinia chrysanthemi transcriptional activator protein ExpR SW:EXPR_ERWCH (Q47188) (250 aa) fasta scores: E(): 0%2C 55.1%25 id in 245 aa. Similar to YPO0985 (47.7%25 identity in 239 aa overlap);gbkey=CDS;gene=ypeR;inference=similar to sequence:INSDC:AF071401;product=quorum-sensing transcriptional activator YpeR;protein_id=CAL21085.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2754774	2754971	.	-	.	ID=id5797;Note=Pfam match to entry PF00196 GerE%2C Bacterial regulatory proteins%2C luxR family%2C score 53.90%2C E-value 3.4e-12;gbkey=misc_feature;gene=ypeR;inference=protein motif:PF00196
AL590842.1	EMBL	sequence_feature	2754837	2754920	.	-	.	ID=id5798;Note=PS00622 Bacterial regulatory proteins%2C luxR family signature.;gbkey=misc_feature;gene=ypeR;inference=protein motif:ProSite:PS00622
AL590842.1	EMBL	sequence_feature	2754852	2754917	.	-	.	ID=id5799;Note=Predicted helix-turn-helix motif with score 1682 (+4.92 SD) at aa 197-218%2C sequence KTYSEIAIILGIKKSTVKFHIG;gbkey=misc_feature;gene=ypeR
AL590842.1	EMBL	gene	2755992	2756972	.	-	.	ID=gene2437;Name=YPO2458;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2458
AL590842.1	EMBL	CDS	2755992	2756972	.	-	0	ID=cds2395;Parent=gene2437;Dbxref=GOA:Q7CJ33,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CJ33,NCBI_GP:CAL21086.1;Name=CAL21086.1;Note=Similar to Pseudomonas aeruginosa probable transcriptional regulator PA0032 TR:AAG03422 (EMBL:AE004442) (304 aa) fasta scores: E(): 4.8e-24%2C 34.4%25 id in 299 aa%2C and to Escherichia coli peroxide resistance protein PerR SW:PERR_ECOLI (Q57083) (297 aa) fasta scores: E(): 3.8e-20%2C 29.8%25 id in 295 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004442;product=putative LysR-family transcriptional regulator;protein_id=CAL21086.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2756523	2756900	.	-	.	ID=id5800;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 112.60%2C E-value 7.5e-30;gbkey=misc_feature;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	2756766	2756858	.	-	.	ID=id5801;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00044
AL590842.1	EMBL	sequence_feature	2756796	2756861	.	-	.	ID=id5802;Note=Predicted helix-turn-helix motif with score 1875 (+5.57 SD) at aa 38-59%2C sequence LSFSKAAEALFMTQSAASRQIK;gbkey=misc_feature
AL590842.1	EMBL	ribosome_entry_site	2757354	2757357	.	+	.	ID=id5803;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2757366	2758724	.	+	.	ID=gene2438;Name=YPO2459;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2459
AL590842.1	EMBL	CDS	2757366	2758724	.	+	0	ID=cds2396;Parent=gene2438;Dbxref=GOA:Q7CJ34,InterPro:IPR005828,InterPro:IPR005829,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q7CJ34,NCBI_GP:CAL21087.1;Name=CAL21087.1;Note=Similar to Escherichia coli hypothetical metabolite transport protein YgcS SW:YGCS_ECOLI (Q46909) (445 aa) fasta scores: E(): 0%2C 62.4%25 id in 436 aa%2C and to Escherichia coli hypothetical metabolite transport protein YaaU SW:YAAU_ECOLI (P31679) (443 aa) fasta scores: E(): 0%2C36.8%25 id in 437 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative transporter protein;protein_id=CAL21087.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2757426	2757494	.	+	.	ID=id5804;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2757429	2758685	.	+	.	ID=id5805;Note=Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporter%2C score 153.40%2C E-value 3.9e-42;gbkey=misc_feature;inference=protein motif:PF00083
AL590842.1	EMBL	sequence_feature	2757537	2757605	.	+	.	ID=id5806;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2757630	2757689	.	+	.	ID=id5807;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2757702	2757770	.	+	.	ID=id5808;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2757720	2757797	.	+	.	ID=id5809;Note=PS00217 Sugar transport proteins signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00217
AL590842.1	EMBL	sequence_feature	2757804	2757872	.	+	.	ID=id5810;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2757900	2757959	.	+	.	ID=id5811;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2758125	2758193	.	+	.	ID=id5812;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2758221	2758289	.	+	.	ID=id5813;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2758308	2758367	.	+	.	ID=id5814;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2758380	2758448	.	+	.	ID=id5815;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2758509	2758562	.	+	.	ID=id5816;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2758572	2758640	.	+	.	ID=id5817;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	ribosome_entry_site	2758759	2758764	.	+	.	ID=id5818;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2758771	2759274	.	+	.	ID=gene2439;Name=YPO2460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2460
AL590842.1	EMBL	CDS	2758771	2759274	.	+	0	ID=cds2397;Parent=gene2439;Dbxref=GOA:Q7CJ35,InterPro:IPR014826,InterPro:IPR020568,UniProtKB/TrEMBL:Q7CJ35,NCBI_GP:CAL21088.1;Name=CAL21088.1;Note=Similar to Methylobacterium extorquens formaldehyde-activating enzyme TR:AAG32954 (EMBL:AF032114) (170 aa) fasta scores: E(): 8.8e-13%2C 28.6%25 id in 161 aa%2Cand to the N-terminus of Archaeoglobus fulgidus D-arabino 3-hexulose 6-phosphate formaldehyde lyase AF1305 TR:O28964 (EMBL:AE001014) (394 aa) fasta scores: E(): 5.1e-17%2C 32.7%25 id in 162 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF032114;product=conserved hypothetical protein;protein_id=CAL21088.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2759273	2759276	.	+	.	ID=id5819;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2759285	2760304	.	+	.	ID=gene2440;Name=YPO2461;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2461
AL590842.1	EMBL	CDS	2759285	2760304	.	+	0	ID=cds2398;Parent=gene2440;Dbxref=InterPro:IPR001395,InterPro:IPR023210,UniProtKB/TrEMBL:Q7CJ36,NCBI_GP:CAL21089.1;Name=CAL21089.1;Note=Similar to Streptomyces coelicolor putative oxidoreductase SCE56.02 TR:Q9L1S0 (EMBL:AL138852) (336 aa) fasta scores: E(): 0%2C 44.2%25 id in 317 aa%2C and to Escherichia coli hypothetical oxidoreductase YajO SW:YAJO_ECOLI (P77735) (324 aa) fasta scores: E(): 0%2C 41.2%25 id in 323 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL138852;product=putative oxidoreductase;protein_id=CAL21089.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2759477	2759755	.	+	.	ID=id5820;Note=Pfam match to entry PF00248 aldo_ket_red%2C Aldo/keto reductase family%2C score 25.80%2C E-value 2.4e-06;gbkey=misc_feature;inference=protein motif:PF00248
AL590842.1	EMBL	gene	2760382	2760936	.	-	.	ID=gene2441;Name=YPO2462;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2462
AL590842.1	EMBL	CDS	2760382	2760936	.	-	0	ID=cds2399;Parent=gene2441;Dbxref=InterPro:IPR013396,UniProtKB/TrEMBL:Q7CJ37,NCBI_GP:CAL21090.1;Name=CAL21090.1;Note=Similar to Pasteurella multocida hypothetical protein PM0308 TR:Q9CNW5 (EMBL:AE006066) (186 aa) fasta scores: E(): 5.8e-13%2C 32.620%25 id in 187 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE006066;product=conserved hypothetical protein;protein_id=CAL21090.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2760941	2760948	.	-	.	ID=id5821;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2760947	2761951	.	-	.	ID=gene2442;Name=YPO2463;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2463
AL590842.1	EMBL	CDS	2760947	2761951	.	-	0	ID=cds2400;Parent=gene2442;Dbxref=InterPro:IPR013399,UniProtKB/TrEMBL:Q7CJ38,NCBI_GP:CAL21091.1;Name=CAL21091.1;Note=Similar to Pasteurella multocida hypothetical protein PM0307 TR:Q9CNW6 (EMBL:AE006066) (335 aa) fasta scores: E(): 1.9e-67%2C 55.522%25 id in 335 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE006066;product=conserved hypothetical protein;protein_id=CAL21091.1;transl_table=11
AL590842.1	EMBL	gene	2761969	2762919	.	-	.	ID=gene2443;Name=YPO2464;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2464
AL590842.1	EMBL	CDS	2761969	2762919	.	-	0	ID=cds2401;Parent=gene2443;Dbxref=InterPro:IPR013398,UniProtKB/TrEMBL:Q7CJ39,NCBI_GP:CAL21092.1;Name=CAL21092.1;Note=Similar to Pasteurella multocida hypothetical protein PM0306 TR:Q9CNW7 (EMBL:AE006066) (327 aa) fasta scores: E(): 4.2e-07%2C 34.049%25 id in 326 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE006066;product=conserved hypothetical protein;protein_id=CAL21092.1;transl_table=11
AL590842.1	EMBL	gene	2762916	2764262	.	-	.	ID=gene2444;Name=YPO2465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2465
AL590842.1	EMBL	CDS	2762916	2764262	.	-	0	ID=cds2402;Parent=gene2444;Dbxref=InterPro:IPR013397,UniProtKB/TrEMBL:Q7CJ40,NCBI_GP:CAL21093.1;Name=CAL21093.1;Note=Similar to Pasteurella multocida hypothetical protein PM0305 TR:Q9CNW8 (EMBL:AE006066) (444 aa) fasta scores: E(): 1.6e-25%2C 28.918%25 id in 453 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE006066;product=conserved hypothetical protein;protein_id=CAL21093.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2763156	2763182	.	-	.	ID=id5822;Note=PS00037 Myb DNA-binding domain repeat signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS00037
AL590842.1	EMBL	ribosome_entry_site	2762928	2762931	.	-	.	ID=id5823;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2764300	2764554	.	-	.	ID=gene2445;Name=YPO2466;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2466
AL590842.1	EMBL	CDS	2764300	2764554	.	-	0	ID=cds2403;Parent=gene2445;Dbxref=UniProtKB/TrEMBL:Q0WE58,NCBI_GP:CAL21094.1;Name=CAL21094.1;Note=Poor database matches. Weakly similar to an internal region of Chlamydia muridarum ATP-dependent helicase PcrA tc0898 TR:Q9PJD1 (EMBL:AE002356) (634 aa) fasta scores: E(): 5%2C 25.301%25 id in 83 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE002356;product=hypothetical protein;protein_id=CAL21094.1;transl_table=11
AL590842.1	EMBL	gene	2764670	2767957	.	-	.	ID=gene2446;Name=YPO2467;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2467
AL590842.1	EMBL	CDS	2764670	2767957	.	-	0	ID=cds2404;Parent=gene2446;Dbxref=GOA:Q7CJ41,InterPro:IPR006483,InterPro:IPR013395,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CJ41,NCBI_GP:CAL21095.1;Name=CAL21095.1;Note=Similar to Pasteurella multocida hypothetical protein PM0312 TR:Q9CNW1 (EMBL:AE006067) (1106 aa) fasta scores: E(): 4.8e-143%2C 40.941%25 id in 1126 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE006067;product=conserved hypothetical protein;protein_id=CAL21095.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2766635	2766658	.	-	.	ID=id5824;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	2767532	2767555	.	-	.	ID=id5825;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2767954	2768940	.	-	.	ID=gene2447;Name=YPO2468;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2468
AL590842.1	EMBL	CDS	2767954	2768940	.	-	0	ID=cds2405;Parent=gene2447;Dbxref=GOA:Q0WE56,InterPro:IPR002729,InterPro:IPR019857,UniProtKB/TrEMBL:Q0WE56,NCBI_GP:CAL21096.1;Name=CAL21096.1;Note=Similar to Pasteurella multocida hypothetical protein PM0311 TR:Q9CNW2 (EMBL:AE006067) (326 aa) fasta scores: E(): 6.5e-74%2C 58.413%25 id in 315 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE006067;product=conserved hypothetical protein;protein_id=CAL21096.1;transl_table=11
AL590842.1	EMBL	gene	2769322	2769654	.	-	.	ID=gene2448;Name=YPO2469;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2469
AL590842.1	EMBL	CDS	2769322	2769654	.	-	0	ID=cds2406;Parent=gene2448;Dbxref=UniProtKB/TrEMBL:Q0WE55,NCBI_GP:CAL21097.1;Name=CAL21097.1;Note=Similar to Pasteurella multocida hypothetical protein PM0309 TR:Q9CNW4 (EMBL:AE006067) (118 aa) fasta scores: E(): 0.028%2C 33.028%25 id in 109 aa. N-terminal region is similar to Pasteurella multocida hypothetical protein PM1841 TR:Q9CJZ7 (EMBL:AE006222) (93 aa) fasta scores: E(): 8.4e-08%2C 43.478%25 id in 92 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE006222;product=conserved hypothetical protein;protein_id=CAL21097.1;transl_table=11
AL590842.1	EMBL	gene	2770137	2771384	.	+	.	ID=gene2449;Name=YPO2470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2470
AL590842.1	EMBL	CDS	2770137	2771384	.	+	0	ID=cds2407;Parent=gene2449;Dbxref=GOA:Q7CJ42,InterPro:IPR006685,InterPro:IPR010920,UniProtKB/TrEMBL:Q7CJ42,NCBI_GP:CAL21098.1;Name=CAL21098.1;Note=Similar to Escherichia coli hypothetical protein YbdG SW:YBDG_ECOLI (P39455) (415 aa) fasta scores: E(): 0%2C62.9%25 id in 410 aa%2C and to Vibrio cholerae hypothetical protein VC0265 TR:Q9KV91 (EMBL:AE004115) (412 aa) fasta scores: E(): 0%2C 59.0%25 id in 410 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004115;product=putative membrane protein;protein_id=CAL21098.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2770194	2770262	.	+	.	ID=id5826;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2770353	2770406	.	+	.	ID=id5827;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2770449	2770517	.	+	.	ID=id5828;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2770554	2770622	.	+	.	ID=id5829;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2770563	2771336	.	+	.	ID=id5830;Note=Pfam match to entry PF00924 UPF0003%2C Uncharacterized protein family UPF0003%2C score 155.00%2C E-value 1.3e-42;gbkey=misc_feature;inference=protein motif:PF00924
AL590842.1	EMBL	sequence_feature	2770650	2770718	.	+	.	ID=id5831;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2771967	2773241	.	-	.	ID=gene2450;Name=YPO2471;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2471
AL590842.1	EMBL	CDS	2771967	2773241	.	-	0	ID=cds2408;Parent=gene2450;Dbxref=UniProtKB/TrEMBL:Q7CJ43,NCBI_GP:CAL21099.1;Name=CAL21099.1;Note=No significant database matches;gbkey=CDS;product=putative exported protein;protein_id=CAL21099.1;transl_table=11
AL590842.1	EMBL	gene	2773280	2774395	.	-	.	ID=gene2451;Name=YPO2472;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2472
AL590842.1	EMBL	CDS	2773280	2774395	.	-	0	ID=cds2409;Parent=gene2451;Dbxref=GOA:Q0WE52,InterPro:IPR011250,UniProtKB/TrEMBL:Q0WE52,NCBI_GP:CAL21100.1;Name=CAL21100.1;Note=No significant database matches;gbkey=CDS;product=putative exported protein;protein_id=CAL21100.1;transl_table=11
AL590842.1	EMBL	gene	2774518	2775456	.	-	.	ID=gene2452;Name=YPO2473;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2473
AL590842.1	EMBL	CDS	2774518	2775456	.	-	0	ID=cds2410;Parent=gene2452;Dbxref=InterPro:IPR015045,InterPro:IPR023296,UniProtKB/TrEMBL:Q7CJ44,NCBI_GP:CAL21101.1;Name=CAL21101.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21101.1;transl_table=11
AL590842.1	EMBL	gene	2775483	2776538	.	-	.	ID=gene2453;Name=YPO2474;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2474
AL590842.1	EMBL	CDS	2775483	2776538	.	-	0	ID=cds2411;Parent=gene2453;Dbxref=InterPro:IPR007184,InterPro:IPR023296,UniProtKB/TrEMBL:Q7CJ45,NCBI_GP:CAL21102.1;Name=CAL21102.1;Note=Similar in its C-terminal domain to Thermotoga maritima conserved hypothetical protein TM1852 TR:Q9X2G7 (EMBL:AE001822) (296 aa) fasta scores: E(): 0%2C 44.8%25 id in 250 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE001822;product=conserved hypothetical protein;protein_id=CAL21102.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2776545	2776548	.	-	.	ID=id5832;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2776685	2777509	.	-	.	ID=gene2454;Name=YPO2475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2475
AL590842.1	EMBL	CDS	2776685	2777509	.	-	0	ID=cds2412;Parent=gene2454;Dbxref=GOA:Q7CJ46,InterPro:IPR000515,UniProtKB/TrEMBL:Q7CJ46,NCBI_GP:CAL21103.1;Name=CAL21103.1;Note=Similar to Thermotoga maritima possible sugar ABC transporter permease protein TM1853 TR:Q9X2G8 (EMBL:AE001822) (273 aa) fasta scores: E(): 0%2C 52.9%25 id in 274 aa%2C and to Xylella fastidiosa ABC transporter sugar permease XF2446 TR:Q9PAP9 (EMBL:AE004053) (278 aa) fasta scores: E(): 1.9e-30%2C 32.8%25 id in 268 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004053;product=sugar ABC transporter%2C permease protein;protein_id=CAL21103.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2776730	2776795	.	-	.	ID=id5833;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2776808	2777032	.	-	.	ID=id5834;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 30.70%2C E-value 3.5e-05;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	2776898	2776963	.	-	.	ID=id5835;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2777027	2777092	.	-	.	ID=id5836;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2777123	2777188	.	-	.	ID=id5837;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2777216	2777281	.	-	.	ID=id5838;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2777510	2778385	.	-	.	ID=gene2455;Name=YPO2476;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2476
AL590842.1	EMBL	CDS	2777510	2778385	.	-	0	ID=cds2413;Parent=gene2455;Dbxref=GOA:Q7CJ47,InterPro:IPR000515,UniProtKB/TrEMBL:Q7CJ47,NCBI_GP:CAL21104.1;Name=CAL21104.1;Note=Similar to Thermotoga maritima sugar ABC transporter permease protein TM1854 TR:Q9X2G9 (EMBL:AE001822) (290 aa) fasta scores: E(): 0%2C 54.5%25 id in 288 aa%2C and to Thermus brockianus putative integral membrane protein BdtF TR:Q9X6C4 (EMBL:AF135398) (280 aa) fasta scores: E(): 6.1e-26%2C 34.5%25 id in 252 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF135398;product=sugar ABC transporter%2C permease protein;protein_id=CAL21104.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2777546	2777602	.	-	.	ID=id5839;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2777624	2777857	.	-	.	ID=id5840;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 53.50%2C E-value 4.7e-12;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	2777705	2777770	.	-	.	ID=id5841;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2777861	2777926	.	-	.	ID=id5842;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2778017	2778082	.	-	.	ID=id5843;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2778104	2778160	.	-	.	ID=id5844;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2778206	2778259	.	-	.	ID=id5845;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2778275	2778340	.	-	.	ID=id5846;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2778494	2779780	.	-	.	ID=gene2456;Name=YPO2477;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2477
AL590842.1	EMBL	CDS	2778494	2779780	.	-	0	ID=cds2414;Parent=gene2456;Dbxref=UniProtKB/TrEMBL:Q0WE47,NCBI_GP:CAL21105.1;Name=CAL21105.1;Note=Similar to Thermotoga maritima sugar ABC transporter%2C periplasmic sugar-binding protein%2C putative TM1855 TR:Q9X2H0 (EMBL:AE001822) (418 aa) fasta scores: E(): 0%2C 50.8%25 id in 400 aa%2C and to Xylella fastidiosa ABC transporter sugar-binding protein XF2448 TR:Q9PAP7 (EMBL:AE004053) (430 aa) fasta scores: E(): 9.8e-12%2C 21.5%25 id in 423 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004053;product=putative solute-binding protein;protein_id=CAL21105.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2778518	2779360	.	-	.	ID=id5847;Note=Pfam match to entry PF01547 SBP_bacterial_1%2CBacterial extracellular solute-binding protein%2C score 53.30%2C E-value 6.2e-14;gbkey=misc_feature;inference=protein motif:PF01547
AL590842.1	EMBL	gene	2780052	2781092	.	+	.	ID=gene2457;Name=YPO2478;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2478
AL590842.1	EMBL	CDS	2780052	2781092	.	+	0	ID=cds2415;Parent=gene2457;Dbxref=GOA:Q7CJ48,InterPro:IPR000843,InterPro:IPR010982,InterPro:IPR028082,UniProtKB/TrEMBL:Q7CJ48,NCBI_GP:CAL21106.1;Name=CAL21106.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein RV3575c TR:P96857 (EMBL:Z92774) (359 aa) fasta scores: E(): 0%2C 34.4%25 id in 349 aa%2C and to Agrobacterium radiobacter plasmid pAtC58 transcriptional repressor TR:Q9WWF6 (EMBL:AF151698) (383 aa) fasta scores: E(): 2.6e-12%2C 25.5%25 id in 330 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z92774;product=LacI-family transcriptional regulatory protein;protein_id=CAL21106.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2780073	2780138	.	+	.	ID=id5848;Note=Predicted helix-turn-helix motif with score 1961 (+5.87 SD) at aa 8-29%2C sequence ETLKTIAETLNVTHTTVSNVFN;gbkey=misc_feature
AL590842.1	EMBL	sequence_feature	2780244	2781014	.	+	.	ID=id5849;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 43.00%2C E-value 6.9e-09;gbkey=misc_feature;inference=protein motif:PF00532
AL590842.1	EMBL	gene	2781109	2782497	.	+	.	ID=gene2458;Name=manB;gbkey=Gene;gene=manB;gene_biotype=protein_coding;gene_synonym=rfbK,rfbK2;locus_tag=YPO2479
AL590842.1	EMBL	CDS	2781109	2782497	.	+	0	ID=cds2416;Parent=gene2458;Dbxref=GOA:Q0WE45,InterPro:IPR005841,InterPro:IPR005843,InterPro:IPR005844,InterPro:IPR005845,InterPro:IPR005846,InterPro:IPR016055,InterPro:IPR016066,UniProtKB/TrEMBL:Q0WE45,NCBI_GP:CAL21107.1;Name=CAL21107.1;Note=Similar to Escherichia coli phosphomannomutase ManB SW:RFK9_ECOLI (P37755) (456 aa) fasta scores: E(): 0%2C 61.5%25 id in 462 aa%2C to Salmonella montevideo phosphomannomutase ManB SW:MANB_SALMO (Q01411) (456 aa) fasta scores: E(): 0%2C61.4%25 id in 461 aa and to Yersinia pestis YPO3097 (457 aa) fasta scores: E(): 0%2C 61.4%25 identity in 461 aa overlap;gbkey=CDS;gene=manB;product=phosphomannomutase;protein_id=CAL21107.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2781115	2782452	.	+	.	ID=id5850;Note=Pfam match to entry PF00408 PGM_PMM%2CPhosphoglucomutase/phosphomannomutase%2C score 608.50%2CE-value 4e-179;gbkey=misc_feature;gene=manB;inference=protein motif:PF00408
AL590842.1	EMBL	sequence_feature	2781382	2781426	.	+	.	ID=id5851;Note=PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature.;gbkey=misc_feature;gene=manB;inference=protein motif:ProSite:PS00710
AL590842.1	EMBL	ribosome_entry_site	2782587	2782590	.	+	.	ID=id5852;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2782597	2783676	.	+	.	ID=gene2459;Name=mtlK;gbkey=Gene;gene=mtlK;gene_biotype=protein_coding;locus_tag=YPO2480
AL590842.1	EMBL	CDS	2782597	2783676	.	+	0	ID=cds2417;Parent=gene2459;Dbxref=GOA:Q0WE44,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR008995,InterPro:IPR012340,InterPro:IPR013611,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WE44,NCBI_GP:CAL21108.1;Name=CAL21108.1;Note=Similar to Pseudomonas fluorescens probable mannitol transport ATP-binding protein MtlK TR:O30494 (EMBL:AF007800) (367 aa) fasta scores: E(): 0%2C 46.7%25 id in 360 aa%2C and to Escherichia coli maltose/maltodextrin transport ATP-binding protein MalK SW:MALK_ECOLI (P02914) (371 aa) fasta scores: E(): 0%2C 47.1%25 id in 365 aa;gbkey=CDS;gene=mtlK;inference=similar to sequence:INSDC:AF007800;product=putative mannitol transport ATP-binding protein;protein_id=CAL21108.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2782738	2783226	.	+	.	ID=id5853;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 138.10%2C E-value 1.6e-37;gbkey=misc_feature;gene=mtlK;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2782996	2783040	.	+	.	ID=id5854;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=mtlK;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	2783941	2784486	.	-	.	ID=gene2460;Name=YPO2481;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2481
AL590842.1	EMBL	CDS	2783941	2784486	.	-	0	ID=cds2418;Parent=gene2460;Dbxref=UniProtKB/TrEMBL:Q7CJ49,NCBI_GP:CAL21109.1;Name=CAL21109.1;Note=Similar to the N-terminal region of Pseudomonas putida putative sulfonate binding protein precursor SsuA TR:O85763 (EMBL:AF075709) (321 aa) fasta scores: E(): 6.5%2C24.194%25 id in 186 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF075709;product=putative exported protein;protein_id=CAL21109.1;transl_table=11
AL590842.1	EMBL	gene	2784744	2785196	.	-	.	ID=gene2461;Name=YPO2482;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2482
AL590842.1	EMBL	CDS	2784744	2785196	.	-	0	ID=cds2419;Parent=gene2461;Dbxref=UniProtKB/TrEMBL:Q0WE42,NCBI_GP:CAL21110.1;Name=CAL21110.1;Note=Poor database matches. Weakly similar to Mycobacterium tuberculosis hypothetical protein AT10S TR:Q50577 (EMBL:D17369) (170 aa) fasta scores: E(): 0.97%2C35.714%25 id in 70 aa;gbkey=CDS;inference=similar to sequence:INSDC:D17369;product=hypothetical protein;protein_id=CAL21110.1;transl_table=11
AL590842.1	EMBL	gene	2785296	2785700	.	-	.	ID=gene2462;Name=YPO2483;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2483
AL590842.1	EMBL	CDS	2785296	2785700	.	-	0	ID=cds2420;Parent=gene2462;Dbxref=InterPro:IPR025459,UniProtKB/TrEMBL:Q7CJ50,NCBI_GP:CAL21111.1;Name=CAL21111.1;Note=Poor database matches. Similar to an internal region of Bacillus subtilis hypothetical protein YdaK TR:P96585 (EMBL:AB001488) (283 aa) fasta scores: E(): 7.8%2C 26.316%25 id in 114 aa;gbkey=CDS;inference=similar to sequence:INSDC:AB001488;product=hypothetical protein;protein_id=CAL21111.1;transl_table=11
AL590842.1	EMBL	gene	2785842	2786009	.	-	.	ID=gene2463;Name=YPO2484;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2484
AL590842.1	EMBL	CDS	2785842	2786009	.	-	0	ID=cds2421;Parent=gene2463;Dbxref=UniProtKB/TrEMBL:Q74T86,NCBI_GP:CAL21112.1;Name=CAL21112.1;Note=No significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21112.1;transl_table=11
AL590842.1	EMBL	gene	2786212	2786409	.	-	.	ID=gene2464;Name=YPO2485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2485
AL590842.1	EMBL	CDS	2786212	2786409	.	-	0	ID=cds2422;Parent=gene2464;Dbxref=UniProtKB/TrEMBL:Q7CJ51,NCBI_GP:CAL21113.1;Name=CAL21113.1;Note=Similar to Caulobacter crescentus hypothetical protein CC3362 TR:Q9A344 (EMBL:AE005997) (71 aa) fasta scores: E(): 0.29%2C 32.353%25 id in 68 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE005997;product=conserved hypothetical protein;protein_id=CAL21113.1;transl_table=11
AL590842.1	EMBL	gene	2786419	2788452	.	-	.	ID=gene2465;Name=YPO2486;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2486
AL590842.1	EMBL	CDS	2786419	2788452	.	-	0	ID=cds2423;Parent=gene2465;Dbxref=InterPro:IPR006914,UniProtKB/TrEMBL:Q0WE38,NCBI_GP:CAL21114.1;Name=CAL21114.1;Note=Low similarity to the C-terminal domain of Xylella fastidiosa hemaglutinin-like secreted protein XF2775 TR:Q9P9U6 (EMBL:AE004082) (3455 aa) fasta scores: E(): 2e-09%2C 26.4%25 id in 605 aa and similar to Yersinia pestis YPO2490 (2535 aa) fasta scores: E(): 0%2C 98.4%25 identity in 426 aa overlap;gbkey=CDS;inference=similar to sequence:INSDC:AE004082;product=conserved hypothetical protein;protein_id=CAL21114.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2786584	2786607	.	-	.	ID=id5855;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2788665	2789003	.	+	.	ID=gene2466;Name=YPO2487;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2487
AL590842.1	EMBL	CDS	2788665	2789003	.	+	0	ID=cds2424;Parent=gene2466;Dbxref=UniProtKB/TrEMBL:Q0WE37,NCBI_GP:CAL21115.1;Name=CAL21115.1;Note=No significant database matches;gbkey=CDS;product=putative membrane protein;protein_id=CAL21115.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2788872	2788940	.	+	.	ID=id5856;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2789116	2789367	.	-	.	ID=gene2467;Name=YPO2488;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2488
AL590842.1	EMBL	CDS	2789116	2789367	.	-	0	ID=cds2425;Parent=gene2467;Dbxref=UniProtKB/TrEMBL:Q7CJ52,NCBI_GP:CAL21116.1;Name=CAL21116.1;Note=Poor database matches. Similar to the N-terminal region of Staphylococcus aureus N315 hypothetical protein SA2158 TR:Q99RQ9 (EMBL:AP003137) (204 aa) fasta scores: E(): 5.3%2C 30.303%25 id in 66 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP003137;product=hypothetical protein;protein_id=CAL21116.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2789377	2789380	.	-	.	ID=id5857;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2789612	2790115	.	-	.	ID=gene2468;Name=YPO2489;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2489
AL590842.1	EMBL	CDS	2789612	2790115	.	-	0	ID=cds2426;Parent=gene2468;Dbxref=InterPro:IPR016630,UniProtKB/TrEMBL:Q0WE35,NCBI_GP:CAL21117.1;Name=CAL21117.1;Note=Similar to Neisseria meningitidis hypothetical protein NMA0037 TR:Q9JQT0 (EMBL:AL162752) (157 aa) fasta scores: E(): 1.8e-19%2C 36.538%25 id in 156 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL162752;product=conserved hypothetical protein;protein_id=CAL21117.1;transl_table=11
AL590842.1	EMBL	gene	2790123	2797730	.	-	.	ID=gene2469;Name=YPO2490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2490
AL590842.1	EMBL	CDS	2790123	2797730	.	-	0	ID=cds2427;Parent=gene2469;Dbxref=InterPro:IPR006914,InterPro:IPR008619,InterPro:IPR008638,InterPro:IPR010069,InterPro:IPR011050,InterPro:IPR012334,InterPro:IPR024973,InterPro:IPR025157,UniProtKB/TrEMBL:Q0WE34,NCBI_GP:CAL21118.1;Name=CAL21118.1;Note=Similar to Serratia marcescens hemolysin precursor ShlA SW:HLYA_SERMA (P15320) (1608 aa) fasta scores: E(): 9.9e-27%2C 24.5%25 id in 1835 aa%2C and to Proteus mirabilis hemolysin precursor HpmA SW:HLYA_PROMI (P16466) (1577 aa) fasta scores: E(): 6.2e-30%2C 23.2%25 id in 1732 aa%2C and to Yersinia pestis YPO0599 (3295 aa) fasta scores: E(): 0%2C54.1%25 identity in 3281 aa overlap;gbkey=CDS;product=putative hemolysin;protein_id=CAL21118.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2790441	2790464	.	-	.	ID=id5858;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2797874	2799562	.	-	.	ID=gene2470;Name=YPO2491;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2491
AL590842.1	EMBL	CDS	2797874	2799562	.	-	0	ID=cds2428;Parent=gene2470;Dbxref=GOA:Q7CJ53,InterPro:IPR005565,InterPro:IPR013686,InterPro:IPR027282,UniProtKB/TrEMBL:Q7CJ53,NCBI_GP:CAL21119.1;Name=CAL21119.1;Note=Similar to Serratia marcescens hemolysin activator protein precursor ShlB SW:HLYB_SERMA (P15321) (557 aa) fasta scores: E(): 3.5e-26%2C 26.8%25 id in 482 aa%2C and to Proteus mirabilis hemolysin activator protein precursor HpmB SW:HLYB_PROMI (P16465) (561 aa) fasta scores: E(): 1.7e-26%2C 25.7%25 id in 529 aa%2C and to Yersinia pestis YPO0598 (562 aa) fasta scores: E(): 0%2C 81.5%25 identity in 561 aa overlap;gbkey=CDS;product=putative hemolysin activator protein;protein_id=CAL21119.1;transl_table=11
AL590842.1	EMBL	ribosome_entry_site	2799571	2799574	.	-	.	ID=id5859;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2800214	2801179	.	-	.	ID=gene2471;Name=YPO2492;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2492
AL590842.1	EMBL	CDS	2800214	2801179	.	-	0	ID=cds2429;Parent=gene2471;Dbxref=GOA:Q7CJ54,InterPro:IPR000951,InterPro:IPR001041,InterPro:IPR001433,InterPro:IPR006058,InterPro:IPR008333,InterPro:IPR012675,InterPro:IPR017927,InterPro:IPR017938,UniProtKB/TrEMBL:Q7CJ54,NCBI_GP:CAL21120.1;Name=CAL21120.1;Note=Similar to Escherichia coli putative dioxygenase beta subunit YeaX SW:YEAX_ECOLI (P76254) (321 aa) fasta scores: E(): 0%2C 58.9%25 id in 321 aa%2C and to Pseudomonas putida vanillate O-demethylase oxidoreductase VanB SW:VANB_PSEPU (O54037) (315 aa) fasta scores: E(): 0%2C 36.8%25 id in 321 aa;gbkey=CDS;product=putative dioxygenase beta subunit;protein_id=CAL21120.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2800238	2800477	.	-	.	ID=id5860;Note=Pfam match to entry PF00111 fer2%2C 2Fe-2S iron-sulfur cluster binding domains%2C score 43.30%2C E-value 5.3e-09;gbkey=misc_feature;inference=protein motif:PF00111
AL590842.1	EMBL	sequence_feature	2800346	2800372	.	-	.	ID=id5861;Note=PS00197 2Fe-2S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00197
AL590842.1	EMBL	gene	2801275	2802399	.	-	.	ID=gene2472;Name=YPO2493;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2493
AL590842.1	EMBL	CDS	2801275	2802399	.	-	0	ID=cds2430;Parent=gene2472;Dbxref=GOA:Q0WE31,InterPro:IPR001663,InterPro:IPR015879,InterPro:IPR015881,InterPro:IPR017941,UniProtKB/TrEMBL:Q0WE31,NCBI_GP:CAL21121.1;Name=CAL21121.1;Note=Similar to Escherichia coli putative dioxygenase alpha subunit YeaW SW:YEAW_ECOLI (P76253) (374 aa) fasta scores: E(): 0%2C 82.6%25 id in 374 aa%2C and to Beta vulgaris choline monooxygenase TR:O22553 (EMBL:AF023132) (446 aa) fasta scores: E(): 6.4e-26%2C 30.1%25 id in 366 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF023132;product=putative dioxygenase alpha subunit;protein_id=CAL21121.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2802019	2802201	.	-	.	ID=id5862;Note=Pfam match to entry PF00355 Rieske%2C Rieske [2Fe-2S] domain%2C score 78.10%2C E-value 1.9e-19;gbkey=misc_feature;inference=protein motif:PF00355
AL590842.1	EMBL	gene	2802516	2804162	.	-	.	ID=gene2473;Name=YPO2494;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2494
AL590842.1	EMBL	CDS	2802516	2804162	.	-	0	ID=cds2431;Parent=gene2473;Dbxref=GOA:Q0WE30,InterPro:IPR000060,InterPro:IPR018093,UniProtKB/TrEMBL:Q0WE30,NCBI_GP:CAL21122.1;Name=CAL21122.1;Note=Similar to Staphylococcus xylosus choline transporter CudT TR:Q9X2L9 (EMBL:AF009415) (540 aa) fasta scores: E(): 0%2C 35.2%25 id in 511 aa%2C and to Escherichia coli probable transport protein YeaV SW:YEAV_ECOLI (P76252) (481 aa) fasta scores: E(): 0%2C 78.4%25 id in 467 aa. CDS had extra amino acids at the N-terminus in comparison to the E. coli protein;gbkey=CDS;inference=similar to sequence:INSDC:AF009415;product=putative BCCT-family transporter;protein_id=CAL21122.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2802669	2804132	.	-	.	ID=id5863;Note=Pfam match to entry PF02028 BCCT%2C BCCT family transporter%2C score 741.30%2C E-value 4.2e-219;gbkey=misc_feature;inference=protein motif:PF02028
AL590842.1	EMBL	sequence_feature	2802678	2802743	.	-	.	ID=id5864;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2802774	2802830	.	-	.	ID=id5865;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2802891	2802956	.	-	.	ID=id5866;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2803077	2803133	.	-	.	ID=id5867;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2803170	2803226	.	-	.	ID=id5868;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2803203	2803232	.	-	.	ID=id5869;Note=PS01303 BCCT family of transporters signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01303
AL590842.1	EMBL	sequence_feature	2803326	2803382	.	-	.	ID=id5870;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2803344	2803394	.	-	.	ID=id5871;Note=PS00888 Cyclic nucleotide-binding domain signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS00888
AL590842.1	EMBL	sequence_feature	2803422	2803487	.	-	.	ID=id5872;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2803527	2803592	.	-	.	ID=id5873;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2803689	2803754	.	-	.	ID=id5874;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2803842	2803898	.	-	.	ID=id5875;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2803959	2804024	.	-	.	ID=id5876;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	ribosome_entry_site	2804169	2804174	.	-	.	ID=id5877;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	2804528	2804710	.	-	.	ID=gene2474;Name=YPO2495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2495
AL590842.1	EMBL	CDS	2804528	2804710	.	-	0	ID=cds2432;Parent=gene2474;Dbxref=UniProtKB/TrEMBL:Q74T79,NCBI_GP:CAL21123.1;Name=CAL21123.1;Note=No significant database matches. Similar to Yersinia pestis YPO2189 (82 aa) fasta scores: E(): 1.7e-19%2C 93.9%25 identity in 49 aa overlap%2C YPO2518 (59 aa) fasta scores: E(): 6.6e-19%2C 87.8%25 identity in 49 aa overlap%2C YPO4069 (80 aa) fasta scores: E(): 7.3e-19%2C 80.3%25 identity in 61 aa overlap%2C YPO0545 (65 aa) fasta scores: E(): 1e-18%2C 91.7%25 identity in 48 aa overlap%2C YPO2920 (82 aa) fasta scores: E(): 1.6e-18%2C 93.8%25 identity in 48 aa overlap%2C YPO0382 (85 aa) fasta scores: E(): 2e-18%2C 97.8%25 identity in 45 aa overlap;gbkey=CDS;product=putative membrane protein;protein_id=CAL21123.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2804549	2804614	.	-	.	ID=id5878;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2804779	2805876	.	-	.	ID=gene2475;Name=YPO2496;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2496
AL590842.1	EMBL	CDS	2804779	2805876	.	-	0	ID=cds2433;Parent=gene2475;Dbxref=GOA:Q74T78,InterPro:IPR001804,InterPro:IPR011829,InterPro:IPR019818,InterPro:IPR024084,UniProtKB/TrEMBL:Q74T78,NCBI_GP:CAL21124.1;Name=CAL21124.1;Note=Similar to Escherichia coli probable tartrate dehydrogenase YeaU SW:TTUC_ECOLI (P76251) (361 aa) fasta scores: E(): 0%2C 81.3%25 id in 359 aa%2C and to Pseudomonas putida tartrate dehydrogenase SW:TTUC_PSEPU (Q51945) (364 aa) fasta scores: E(): 0%2C 75.4%25 id in 358 aa;gbkey=CDS;product=tartrate dehydrogenase;protein_id=CAL21124.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2804800	2805849	.	-	.	ID=id5879;Note=Pfam match to entry PF00180 isodh%2C Isocitrate and isopropylmalate dehydrogenases%2C score 297.60%2C E-value 3.8e-88;gbkey=misc_feature;inference=protein motif:PF00180
AL590842.1	EMBL	sequence_feature	2805076	2805135	.	-	.	ID=id5880;Note=PS00470 Isocitrate and isopropylmalate dehydrogenases signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00470
AL590842.1	EMBL	gene	2805967	2806908	.	+	.	ID=gene2476;Name=YPO2497;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2497
AL590842.1	EMBL	CDS	2805967	2806908	.	+	0	ID=cds2434;Parent=gene2476;Dbxref=GOA:Q7CJ55,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CJ55,NCBI_GP:CAL21125.1;Name=CAL21125.1;Note=Similar to Escherichia coli hypothetical transcriptional regulator YeaT SW:YEAT_ECOLI (P76250) (307 aa) fasta scores: E(): 0%2C 74.6%25 id in 299 aa%2C and to Escherichia coli hypothetical transcriptional regulator YgiP SW:YGIP_ECOLI (P45463) (310 aa) fasta scores: E(): 0%2C49.3%25 id in 300 aa;gbkey=CDS;product=putativeLlysR-family transcriptional regulatory protein;protein_id=CAL21125.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2805985	2806404	.	+	.	ID=id5881;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 134.60%2C E-value 1.8e-36;gbkey=misc_feature;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	2806024	2806089	.	+	.	ID=id5882;Note=Predicted helix-turn-helix motif with score 1377 (+3.88 SD) at aa 37-58%2C sequence AGFAAAAEEMGVSPAYVSKRVA;gbkey=misc_feature
AL590842.1	EMBL	gene	2807155	2808159	.	+	.	ID=gene2477;Name=YPO2498;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2498
AL590842.1	EMBL	CDS	2807155	2808159	.	+	0	ID=cds2435;Parent=gene2477;Dbxref=GOA:Q7CJ56,InterPro:IPR000843,InterPro:IPR010982,InterPro:IPR025997,InterPro:IPR028082,UniProtKB/TrEMBL:Q7CJ56,NCBI_GP:CAL21126.1;Name=CAL21126.1;Note=Similar to Morganella morganii xylitol repressor TR:Q50253 (EMBL:L34345) (309 aa) fasta scores: E(): 0%2C36.1%25 id in 296 aa%2C and to Escherichia coli ribose operon repressor RbsR SW:RBSR_ECOLI (P25551) (329 aa) fasta scores: E(): 3.6e-21%2C 27.6%25 id in 319 aa;gbkey=CDS;inference=similar to sequence:INSDC:L34345;product=putative LacI-family transcriptional regulatory protein;protein_id=CAL21126.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2807176	2807241	.	+	.	ID=id5883;Note=Predicted helix-turn-helix motif with score 1490 (+4.26 SD) at aa 8-29%2C sequence ATIVDIARRANVTNITVSRTFN;gbkey=misc_feature
AL590842.1	EMBL	sequence_feature	2807344	2808069	.	+	.	ID=id5884;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 6.40%2C E-value 8.2e-06;gbkey=misc_feature;inference=protein motif:PF00532
AL590842.1	EMBL	gene	2808292	2809284	.	-	.	ID=gene2478;Name=rbsC;gbkey=Gene;gene=rbsC;gene_biotype=protein_coding;locus_tag=YPO2499
AL590842.1	EMBL	CDS	2808292	2809284	.	-	0	ID=cds2436;Parent=gene2478;Dbxref=GOA:Q7CJ57,InterPro:IPR001851,UniProtKB/TrEMBL:Q7CJ57,NCBI_GP:CAL21127.1;Name=CAL21127.1;Note=Similar to Bacillus subtilis ribose transport system permease protein RbsC SW:RBSC_BACSU (P36948) (323 aa) fasta scores: E(): 0%2C 48.8%25 id in 322 aa%2C and to Escherichia coli ribose transport system permease protein RbsC SW:RBSC_ECOLI (P04984) (321 aa) fasta scores: E(): 0%2C 47.1%25 id in 325 aa;gbkey=CDS;gene=rbsC;inference=protein motif:TMHMM:2.0;product=putative sugar transport system%2C permease protein;protein_id=CAL21127.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2808421	2808486	.	-	.	ID=id5885;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=rbsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2808532	2808597	.	-	.	ID=id5886;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=rbsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2808691	2808756	.	-	.	ID=id5887;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=rbsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2808802	2808867	.	-	.	ID=id5888;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=rbsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2808907	2808972	.	-	.	ID=id5889;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=rbsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2809033	2809089	.	-	.	ID=id5890;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=rbsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2809126	2809191	.	-	.	ID=id5891;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=rbsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2809281	2810771	.	-	.	ID=gene2479;Name=rbsA;gbkey=Gene;gene=rbsA;gene_biotype=protein_coding;locus_tag=YPO2500
AL590842.1	EMBL	CDS	2809281	2810771	.	-	0	ID=cds2437;Parent=gene2479;Dbxref=GOA:Q7CJ58,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CJ58,NCBI_GP:CAL21128.1;Name=CAL21128.1;Note=Similar to Escherichia coli ribose transport ATP-binding protein RbsA SW:RBSA_ECOLI (P04983) (501 aa) fasta scores: E(): 0%2C 44.4%25 id in 496 aa%2C and to Streptomyces coelicolor ABC transporter protein%2C ATP binding component SCC57a.17 TR:Q9RDI1 (EMBL:AL136519) (517 aa) fasta scores: E(): 0%2C 44.6%25 id in 495 aa;gbkey=CDS;gene=rbsA;inference=similar to sequence:INSDC:AL136519;product=putative sugar transport system%2C ATP-binding protein;protein_id=CAL21128.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2809359	2809934	.	-	.	ID=id5892;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 93.50%2C E-value 4.1e-24;gbkey=misc_feature;gene=rbsA;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2809542	2809586	.	-	.	ID=id5893;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=rbsA;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	2810121	2810684	.	-	.	ID=id5894;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 168.40%2C E-value 1.2e-46;gbkey=misc_feature;gene=rbsA;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2810640	2810663	.	-	.	ID=id5895;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=rbsA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2810811	2811728	.	-	.	ID=gene2480;Name=rbsB;gbkey=Gene;gene=rbsB;gene_biotype=protein_coding;locus_tag=YPO2501
AL590842.1	EMBL	CDS	2810811	2811728	.	-	0	ID=cds2438;Parent=gene2480;Dbxref=InterPro:IPR025997,InterPro:IPR028082,UniProtKB/TrEMBL:Q7CJ59,NCBI_GP:CAL21129.1;Name=CAL21129.1;Note=Similar to Bacillus subtilis D-ribose-binding protein precursor RbsB SW:RBSB_BACSU (P36949) (305 aa) fasta scores: E(): 6.9e-28%2C 40.2%25 id in 276 aa%2C and to Bacillus halodurans possible ribose ABC transporter RbsB TR:Q9K6J7 (EMBL:AP001519) (311 aa) fasta scores: E(): 2.3e-25%2C 38.1%25 id in 268 aa;gbkey=CDS;gene=rbsB;inference=similar to sequence:INSDC:AP001519;product=sugar binding protein precursor;protein_id=CAL21129.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2810916	2811650	.	-	.	ID=id5896;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 32.70%2C E-value 6.3e-08;gbkey=misc_feature;gene=rbsB;inference=protein motif:PF00532
AL590842.1	EMBL	gene	2811903	2813129	.	-	.	ID=gene2481;Name=gutB;gbkey=Gene;gene=gutB;gene_biotype=protein_coding;locus_tag=YPO2502
AL590842.1	EMBL	CDS	2811903	2813129	.	-	0	ID=cds2439;Parent=gene2481;Dbxref=GOA:Q7CJ60,InterPro:IPR002085,InterPro:IPR011032,InterPro:IPR013149,InterPro:IPR013154,InterPro:IPR016040,UniProtKB/TrEMBL:Q7CJ60,NCBI_GP:CAL21130.1;Name=CAL21130.1;Note=Similar to Bacillus subtilis sorbitol dehydrogenase GutB SW:DHSO_BACSU (Q06004) (352 aa) fasta scores: E(): 4.8e-31%2C 31.3%25 id in 355 aa%2C and to Pyrococcus horikoshii hypothetical dehydrogenase PH0655 TR:O58389 (EMBL:AP000003) (348 aa) fasta scores: E(): 1.8e-30%2C 34.6%25 id in 356 aa;gbkey=CDS;gene=gutB;inference=similar to sequence:INSDC:AP000003;product=putative zinc-binding dehydrogenase;protein_id=CAL21130.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2811906	2812919	.	-	.	ID=id5897;Note=Pfam match to entry PF00107 adh_zinc%2C Zinc-binding dehydrogenases%2C score 258.00%2C E-value 1.3e-73;gbkey=misc_feature;gene=gutB;inference=protein motif:PF00107
AL590842.1	EMBL	sequence_feature	2813058	2813123	.	-	.	ID=id5898;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=gutB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2813712	2814380	.	-	.	ID=gene2482;Name=YPO2503;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2503
AL590842.1	EMBL	CDS	2813712	2814380	.	-	0	ID=cds2440;Parent=gene2482;Dbxref=UniProtKB/TrEMBL:Q74T71,NCBI_GP:CAL21131.1;Name=CAL21131.1;Note=No significant database hits to the full length CDS. Similar to N-terminus of Campylobacter jejuni putative galactosyltransferase CJ1136 TR:Q9PNF8 (EMBL:AL139077) (390 aa) fasta scores: E(): 3.2%2C 20.4%25 id in 196 aa. CDS DNA has a low G+C content%2C 33.33%25.;gbkey=CDS;inference=similar to sequence:INSDC:AL139077;product=hypothetical protein;protein_id=CAL21131.1;transl_table=11
AL590842.1	EMBL	gene	2814576	2815118	.	-	.	ID=gene2483;Name=YPO2504;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2504
AL590842.1	EMBL	CDS	2814576	2815118	.	-	0	ID=cds2441;Parent=gene2483;Dbxref=UniProtKB/TrEMBL:Q7CJ61,NCBI_GP:CAL21132.1;Name=CAL21132.1;Note=No significant database hits. CDS DNA has a low G+C content%2C 38.85%25.;gbkey=CDS;product=hypothetical protein;protein_id=CAL21132.1;transl_table=11
AL590842.1	EMBL	gene	2815356	2816294	.	-	.	ID=gene2484;Name=YPO2505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2505
AL590842.1	EMBL	CDS	2815356	2816294	.	-	0	ID=cds2442;Parent=gene2484;Dbxref=GOA:Q7CJ62,InterPro:IPR002524,InterPro:IPR027469,UniProtKB/TrEMBL:Q7CJ62,NCBI_GP:CAL21133.1;Name=CAL21133.1;Note=Similar to Bacillus halodurans hypothetical protein BH0427 TR:Q9KFQ1 (EMBL:AP001508) (301 aa) fasta scores: E(): 5.3e-26%2C 30.7%25 id in 290 aa%2C and to Vibrio cholerae hypothetical protein VCA0834 TR:Q9KLB2 (EMBL:AE004411) (317 aa) fasta scores: E(): 5.1e-22%2C 28.2%25 id in 291 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001508;product=putative membrane protein;protein_id=CAL21133.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2815638	2815703	.	-	.	ID=id5899;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2815749	2815805	.	-	.	ID=id5900;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2815869	2815925	.	-	.	ID=id5901;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2815971	2816036	.	-	.	ID=id5902;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2816076	2816132	.	-	.	ID=id5903;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2816148	2816213	.	-	.	ID=id5904;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2816610	2817134	.	-	.	ID=gene2485;Name=omp4;gbkey=Gene;gene=omp4;gene_biotype=protein_coding;gene_synonym=ompX;locus_tag=YPO2506
AL590842.1	EMBL	CDS	2816610	2817134	.	-	0	ID=cds2443;Parent=gene2485;Dbxref=GOA:Q0WE18,InterPro:IPR000758,InterPro:IPR011250,InterPro:IPR017690,InterPro:IPR027385,UniProtKB/TrEMBL:Q0WE18,NCBI_GP:CAL21134.1;Name=CAL21134.1;Note=Similar to Serratia marcescens outer membrane protein Omp4 TR:Q54470 (EMBL:Z37157) (172 aa) fasta scores: E(): 0%2C 74.1%25 id in 174 aa%2C and to Escherichia coli outer membrane protein OmpX SW:OMPX_ECOLI (P36546) (171 aa) fasta scores: E(): 0%2C 70.7%25 id in 174 aa;gbkey=CDS;gene=omp4;inference=similar to sequence:INSDC:Z37157;product=putative outer membrane protein;protein_id=CAL21134.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2816970	2816996	.	-	.	ID=id5905;Note=PS00694 Enterobacterial virulence outer membrane protein signature 1.;gbkey=misc_feature;gene=omp4;inference=protein motif:ProSite:PS00694
AL590842.1	EMBL	gene	2817539	2818426	.	+	.	ID=gene2486;Name=YPO2507;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2507
AL590842.1	EMBL	CDS	2817539	2818426	.	+	0	ID=cds2444;Parent=gene2486;Dbxref=GOA:Q7CJ63,InterPro:IPR000620,UniProtKB/TrEMBL:Q7CJ63,NCBI_GP:CAL21135.1;Name=CAL21135.1;Note=Similar to Escherichia coli hypothetical integral membrane protein YbiF SW:YBIF_ECOLI (P36545) (295 aa) fasta scores: E(): 0%2C 68.0%25 id in 291 aa%2C and to Pseudomonas aeruginosa conserved hypothetical protein PA1360 TR:AAG04749 (EMBL:AE004565) (297 aa) fasta scores: E(): 0%2C64.1%25 id in 276 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004565;product=putative membrane protein;protein_id=CAL21135.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2817557	2817625	.	+	.	ID=id5906;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2817653	2817721	.	+	.	ID=id5907;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2817758	2817811	.	+	.	ID=id5908;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2817824	2817892	.	+	.	ID=id5909;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2817911	2817964	.	+	.	ID=id5910;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2817977	2818045	.	+	.	ID=id5911;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2817989	2818021	.	+	.	ID=id5912;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	2818016	2818387	.	+	.	ID=id5913;Note=Pfam match to entry PF00892 DUF6%2C Integral membrane protein DUF6%2C score 80.00%2C E-value 4.9e-20;gbkey=misc_feature;inference=protein motif:PF00892
AL590842.1	EMBL	sequence_feature	2818079	2818147	.	+	.	ID=id5914;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2818160	2818219	.	+	.	ID=id5915;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2818256	2818315	.	+	.	ID=id5916;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2818325	2818393	.	+	.	ID=id5917;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2818442	2818939	.	+	.	ID=gene2487;Name=YPO2508;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2508
AL590842.1	EMBL	CDS	2818442	2818939	.	+	0	ID=cds2445;Parent=gene2487;Dbxref=GOA:Q7CJ64,InterPro:IPR000182,InterPro:IPR016181,UniProtKB/TrEMBL:Q7CJ64,NCBI_GP:CAL21136.1;Name=CAL21136.1;Note=Similar to Paracoccus denitrificans hypothetical protein TR:Q51670 (EMBL:U34346) (173 aa) fasta scores: E(): 3.5e-23%2C 45.5%25 id in 154 aa%2C and to Streptomyces coelicolor putative acetyltransferase SCM11.09c TR:Q9RIV2 (EMBL:AL133278) (160 aa) fasta scores: E(): 1e-22%2C 43.5%25 id in 161 aa;gbkey=CDS;inference=similar to sequence:INSDC:U34346;product=conserved hypothetical protein;protein_id=CAL21136.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2818604	2818843	.	+	.	ID=id5918;Note=Pfam match to entry PF00583 Acetyltransf%2CAcetyltransferase (GNAT) family%2C score 42.70%2C E-value 8e-09;gbkey=misc_feature;inference=protein motif:PF00583
AL590842.1	EMBL	gene	2818962	2819738	.	+	.	ID=gene2488;Name=tam;gbkey=Gene;gene=tam;gene_biotype=protein_coding;locus_tag=YPO2509
AL590842.1	EMBL	CDS	2818962	2819738	.	+	0	ID=cds2446;Parent=gene2488;Dbxref=GOA:Q8ZDP7,InterPro:IPR023149,InterPro:IPR023506,InterPro:IPR025714,InterPro:IPR029063,NCBI_GP:CAL21137.1;Name=CAL21137.1;Note=Similar to Escherichia coli trans-aconitate methyltransferase Tam SW:TAM_ECOLI (P76145) (251 aa) fasta scores: E(): 0%2C 55.2%25 id in 252 aa%2C and to Streptomyces coelicolor putative trans-aconitate methyltransferase SCE66.11C TR:Q9K3T2 (EMBL:AL359989) (303 aa) fasta scores: E(): 0%2C 43.3%25 id in 263 aa;gbkey=CDS;gene=tam;inference=similar to sequence:INSDC:AL359989;product=puative trans-aconitate methyltransferase;protein_id=CAL21137.1;transl_table=11
AL590842.1	EMBL	gene	2819995	2820498	.	+	.	ID=gene2489;Name=dps;gbkey=Gene;gene=dps;gene_biotype=protein_coding;locus_tag=YPO2510
AL590842.1	EMBL	CDS	2819995	2820498	.	+	0	ID=cds2447;Parent=gene2489;Dbxref=GOA:Q7CJ65,InterPro:IPR002177,InterPro:IPR008331,InterPro:IPR009078,InterPro:IPR012347,InterPro:IPR023067,InterPro:IPR023188,PDB:4DYU,NCBI_GP:CAL21138.1;Name=CAL21138.1;Note=Similar to Escherichia coli DNA-binding%2C acid and oxidative stress tolerance protein%2C Dps TR:AAD28292 (EMBL:AF140030) (167 aa) fasta scores: E(): 0%2C 79.6%25 id in 167 aa%2C and to Streptomyces coelicolor putative DNA-binding protein SCF55.20 TR:Q9R408 (EMBL:AF068267) (187 aa) fasta scores: E(): 3e-11%2C 33.1%25 id in 154 aa;gbkey=CDS;gene=dps;inference=similar to sequence:INSDC:AF140030;product=putative DNA-binding protein;protein_id=CAL21138.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2820091	2820492	.	+	.	ID=id5919;Note=Pfam match to entry PF02047 DPS%2C Dps protein family%2Cscore 190.10%2C E-value 3.6e-53;gbkey=misc_feature;gene=dps;inference=protein motif:PF02047
AL590842.1	EMBL	sequence_feature	2820145	2820195	.	+	.	ID=id5920;Note=PS00818 Dps protein family signature 1.;gbkey=misc_feature;gene=dps;inference=protein motif:ProSite:PS00818
AL590842.1	EMBL	gene	2820818	2821945	.	+	.	ID=gene2490;Name=YPO2511;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2511
AL590842.1	EMBL	CDS	2820818	2821945	.	+	0	ID=cds2448;Parent=gene2490;Dbxref=InterPro:IPR003848,InterPro:IPR011990,InterPro:IPR013026,InterPro:IPR014729,InterPro:IPR019734,UniProtKB/TrEMBL:Q7CJ66,NCBI_GP:CAL21139.1;Name=CAL21139.1;Note=No significant database matches to the full length CDS. C-terminus similar to the C-terminal region of Escherichia coli hypothetical protein YcbC SW:YCBC_ECOLI (P36565) (259 aa) fasta scores: E(): 0.0017%2C 27.6%25 id in 181 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL21139.1;transl_table=11
AL590842.1	EMBL	gene	2822515	2823258	.	+	.	ID=gene2491;Name=glnH;gbkey=Gene;gene=glnH;gene_biotype=protein_coding;locus_tag=YPO2512
AL590842.1	EMBL	CDS	2822515	2823258	.	+	0	ID=cds2449;Parent=gene2491;Dbxref=GOA:Q7CJ67,InterPro:IPR001638,InterPro:IPR018313,UniProtKB/TrEMBL:Q7CJ67,NCBI_GP:CAL21140.1;Name=CAL21140.1;Note=Similar to Escherichia coli glutamine-binding periplasmic protein precursor GlnH SW:GLNH_ECOLI (P10344) (248 aa) fasta scores: E(): 0%2C 85.1%25 id in 248 aa%2C and to Salmonella typhimurium high-affinity periplasmic glutamine binding protein TR:P74886 (EMBL:U73111) (248 aa) fasta scores: E(): 0%2C 87.5%25 id in 248 aa;gbkey=CDS;gene=glnH;inference=similar to sequence:INSDC:U73111;product=putative glutamine-binding periplasmic protein;protein_id=CAL21140.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2822515	2823240	.	+	.	ID=id5921;Note=Pfam match to entry PF00497 SBP_bac_3%2C Bacterial extracellular solute-binding proteins%2C family 3%2C score 338.40%2C E-value 8e-98;gbkey=misc_feature;gene=glnH;inference=protein motif:PF00497
AL590842.1	EMBL	sequence_feature	2822656	2822697	.	+	.	ID=id5922;Note=PS01039 Bacterial extracellular solute-binding proteins%2C family 3 signature.;gbkey=misc_feature;gene=glnH;inference=protein motif:ProSite:PS01039
AL590842.1	EMBL	gene	2823293	2823949	.	+	.	ID=gene2492;Name=glnP;gbkey=Gene;gene=glnP;gene_biotype=protein_coding;locus_tag=YPO2513
AL590842.1	EMBL	CDS	2823293	2823949	.	+	0	ID=cds2450;Parent=gene2492;Dbxref=GOA:Q7CJ68,InterPro:IPR000515,InterPro:IPR010065,UniProtKB/TrEMBL:Q7CJ68,NCBI_GP:CAL21141.1;Name=CAL21141.1;Note=Similar to Escherichia coli glutamine transport system permease protein GlnP SW:GLNP_ECOLI (P10345) (219 aa) fasta scores: E(): 0%2C 83.6%25 id in 219 aa%2C and to Salmonella typhimurium glutamine transport system permease TR:P74887 (EMBL:U73111) (219 aa) fasta scores: E(): 0%2C84.0%25 id in 219 aa;gbkey=CDS;gene=glnP;inference=similar to sequence:INSDC:U73111;product=putative glutamine transport system permease;protein_id=CAL21141.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2823353	2823421	.	+	.	ID=id5923;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=glnP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2823458	2823526	.	+	.	ID=id5924;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=glnP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2823563	2823631	.	+	.	ID=id5925;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=glnP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2823623	2823835	.	+	.	ID=id5926;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 62.70%2C E-value 7.9e-15;gbkey=misc_feature;gene=glnP;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	2823848	2823916	.	+	.	ID=id5927;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=glnP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2823946	2824668	.	+	.	ID=gene2493;Name=glnQ;gbkey=Gene;gene=glnQ;gene_biotype=protein_coding;locus_tag=YPO2514
AL590842.1	EMBL	CDS	2823946	2824668	.	+	0	ID=cds2451;Parent=gene2493;Dbxref=GOA:Q7CJ69,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CJ69,NCBI_GP:CAL21142.1;Name=CAL21142.1;Note=Similar to Escherichia coli glutamine transport ATP-binding protein GlnQ SW:GLNQ_ECOLI (P10346) (240 aa) fasta scores: E(): 0%2C 83.8%25 id in 240 aa%2C and to Salmonella typhimurium glutamine transport ATP-binding protein GlnQ TR:P74888 (EMBL:U73111) (240 aa) fasta scores: E(): 0%2C84.6%25 id in 240 aa;gbkey=CDS;gene=glnQ;inference=similar to sequence:INSDC:U73111;product=putative glutamine transport ATP-binding protein;protein_id=CAL21142.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2824024	2824581	.	+	.	ID=id5928;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 246.00%2C E-value 5.2e-70;gbkey=misc_feature;gene=glnQ;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2824045	2824068	.	+	.	ID=id5929;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=glnQ;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	2824354	2824398	.	+	.	ID=id5930;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=glnQ;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	2824908	2826155	.	-	.	ID=gene2494;Name=YPO2515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2515
AL590842.1	EMBL	CDS	2824908	2826155	.	-	0	ID=cds2452;Parent=gene2494;Dbxref=GOA:Q0WE09,InterPro:IPR000014,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR004089,InterPro:IPR004090,UniProtKB/TrEMBL:Q0WE09,NCBI_GP:CAL21143.1;Name=CAL21143.1;Note=Similar to an internal region of Pseudomonas aeruginosa chemotactic transducer PctB TR:O32443 (EMBL:D86947) (629 aa) fasta scores: E(): 3.3e-14%2C 27.3%25 id in 395 aa%2C and to Campylobacter jejuni putative MCP-type signal transduction protein CJ1110C TR:Q9PNI4 (EMBL:AL139077) (429 aa) fasta scores: E(): 0%2C 36.4%25 id in 407 aa. The CDS appears to be truncated at the N-terminus in comparison to the Campylobacter jejuni protein and other homologues. Insertion of an IS100 element directly upstream has probably disrupted the promoter of this CDS. Effect on the function of this protein is not known.;gbkey=CDS;inference=similar to sequence:INSDC:D86947;product=putative chemotactic transducer;protein_id=CAL21143.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2825085	2825267	.	-	.	ID=id5931;Note=Pfam match to entry PF00015 MCPsignal%2CMethyl-accepting chemotaxis protein (MCP) signaling domain%2Cscore 105.50%2C E-value 1.1e-28;gbkey=misc_feature;inference=protein motif:PF00015
AL590842.1	EMBL	sequence_feature	2825454	2825573	.	-	.	ID=id5932;Note=Pfam match to entry PF00785 PAC%2C PAC motif%2C score 25.60%2C E-value 1.2e-05;gbkey=misc_feature;inference=protein motif:PF00785
AL590842.1	EMBL	sequence_feature	2825820	2825939	.	-	.	ID=id5933;Note=Pfam match to entry PF00785 PAC%2C PAC motif%2C score 40.90%2C E-value 4.4e-10;gbkey=misc_feature;inference=protein motif:PF00785
AL590842.1	EMBL	repeat_region	2826179	2828132	.	+	.	ID=id5934;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	2826179	2826206	.	+	.	ID=id5935;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	2826265	2827287	.	+	.	ID=gene2495;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO2516
AL590842.1	EMBL	CDS	2826265	2827287	.	+	0	ID=cds2453;Parent=gene2495;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL21144.1;Name=CAL21144.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL21144.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2826289	2826372	.	+	.	ID=id5936;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	sequence_feature	2826316	2826381	.	+	.	ID=id5937;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	2826610	2827143	.	+	.	ID=id5938;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	gene	2827284	2828066	.	+	.	ID=gene2496;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO2517
AL590842.1	EMBL	CDS	2827284	2828066	.	+	0	ID=cds2454;Parent=gene2496;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL21145.1;Name=CAL21145.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL21145.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2827452	2827991	.	+	.	ID=id5939;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	2827611	2827634	.	+	.	ID=id5940;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	INVERTED	2828105	2828132	.	-	.	ID=id5941;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	2828928	2829938	.	-	.	ID=gene2497;Name=YPO2519;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2519
AL590842.1	EMBL	CDS	2828928	2829938	.	-	0	ID=cds2455;Parent=gene2497;Dbxref=GOA:Q7CJ72,InterPro:IPR010286,InterPro:IPR016909,InterPro:IPR029063,NCBI_GP:CAL21146.1;Name=CAL21146.1;Note=Similar to Escherichia coli hypothetical protein YbiN SW:YBIN_ECOLI (P75782) (308 aa) fasta scores: E(): 0%2C57.7%25 id in 307 aa%2C and to Vibrio cholerae hypothetical protein VC1614 TR:Q9KRM2 (EMBL:AE004238) (362 aa) fasta scores: E(): 0%2C 47.1%25 id in 314 aa. Possible alternative translation start site;gbkey=CDS;inference=similar to sequence:INSDC:AE004238;product=conserved hypothetical protein;protein_id=CAL21146.1;transl_table=11
AL590842.1	EMBL	gene	2830226	2830486	.	+	.	ID=gene2498;Name=YPO2521;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2521
AL590842.1	EMBL	CDS	2830226	2830486	.	+	0	ID=cds2456;Parent=gene2498;Dbxref=InterPro:IPR010854,InterPro:IPR025543,UniProtKB/TrEMBL:Q7CJ73,NCBI_GP:CAL21147.1;Name=CAL21147.1;Note=Similar to Escherichia coli hypothetical protein YbiJ SW:YBIJ_ECOLI (P41038) (86 aa) fasta scores: E(): 9.4e-15%2C 54.7%25 id in 86 aa%2C and to Escherichia coli hypothetical protein YcfR SW:YCFR_ECOLI (P75953) (85 aa) fasta scores: E(): 4.8e-14%2C 55.8%25 id in 86 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL21147.1;transl_table=11
AL590842.1	EMBL	gene	2830868	2831827	.	-	.	ID=gene2499;Name=ybiB;gbkey=Gene;gene=ybiB;gene_biotype=protein_coding;locus_tag=YPO2522
AL590842.1	EMBL	CDS	2830868	2831827	.	-	0	ID=cds2457;Parent=gene2499;Dbxref=GOA:Q7CJ74,InterPro:IPR000312,InterPro:IPR017459,UniProtKB/TrEMBL:Q7CJ74,NCBI_GP:CAL21148.1;Name=CAL21148.1;Note=Similar to Streptomyces coelicolor anthranilate phosphoribosyltransferase 1 SC6G10.20C SW:TRD1_STRCO (O68608) (354 aa) fasta scores: E(): 8.9e-10%2C 25.4%25 id in 291 aa%2C and to Escherichia coli hypothetical protein YbiB SW:YBIB_ECOLI (P30177) (320 aa) fasta scores: E(): 0%2C 57.9%25 id in 316 aa;gbkey=CDS;gene=ybiB;product=putative glycosyl transferase;protein_id=CAL21148.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2831351	2831815	.	-	.	ID=id5942;Note=Pfam match to entry PF00591 Glycos_transf_3%2Cglycosyl transferase family%2C score 104.70%2C E-value 1.8e-27;gbkey=misc_feature;gene=ybiB;inference=protein motif:PF00591
AL590842.1	EMBL	gene	2831893	2833308	.	-	.	ID=gene2500;Name=menE;gbkey=Gene;gene=menE;gene_biotype=protein_coding;locus_tag=YPO2523
AL590842.1	EMBL	CDS	2831893	2833308	.	-	0	ID=cds2458;Parent=gene2500;Dbxref=GOA:Q74T56,InterPro:IPR000873,InterPro:IPR010192,InterPro:IPR020845,InterPro:IPR025110,UniProtKB/TrEMBL:Q74T56,NCBI_GP:CAL21149.1;Name=CAL21149.1;Note=Similar to Escherichia coli O-succinylbenzoic acid--CoA ligase MenE SW:MENE_ECOLI (P37353) (451 aa) fasta scores: E(): 0%2C 55.2%25 id in 451 aa%2C and to Haemophilus influenzae O-succinylbenzoic acid--CoA ligase MenE SW:MENE_HAEIN (P44565) (452 aa) fasta scores: E(): 0%2C 47.0%25 id in 464 aa;gbkey=CDS;gene=menE;product=putative O-succinylbenzoic acid--CoA ligase;protein_id=CAL21149.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2832133	2833206	.	-	.	ID=id5943;Note=Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%2C score -29.60%2C E-value 9.1e-14;gbkey=misc_feature;gene=menE;inference=protein motif:PF00501
AL590842.1	EMBL	sequence_feature	2832832	2832867	.	-	.	ID=id5944;Note=PS00455 Putative AMP-binding domain signature.;gbkey=misc_feature;gene=menE;inference=protein motif:ProSite:PS00455
AL590842.1	EMBL	gene	2833296	2834267	.	-	.	ID=gene2501;Name=menC;gbkey=Gene;gene=menC;gene_biotype=protein_coding;locus_tag=YPO2524
AL590842.1	EMBL	CDS	2833296	2834267	.	-	0	ID=cds2459;Parent=gene2501;Dbxref=GOA:P58487,InterPro:IPR001354,InterPro:IPR010196,InterPro:IPR013342,InterPro:IPR029017,InterPro:IPR029065,NCBI_GP:CAL21150.1;Name=CAL21150.1;Note=Similar to Escherichia coli O-succinylbenzoate-CoA synthase MenC SW:MENC_ECOLI (P29208) (320 aa) fasta scores: E(): 0%2C 66.2%25 id in 317 aa%2C and to Vibrio cholerae O-succinylbenzoate-CoA synthase VC1972 TR:Q9KQM6 (EMBL:AE004272) (332 aa) fasta scores: E(): 0%2C 59.2%25 id in 326 aa;gbkey=CDS;gene=menC;inference=similar to sequence:INSDC:AE004272;product=putative O-succinylbenzoate-CoA synthase;protein_id=CAL21150.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2833998	2834030	.	-	.	ID=id5945;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=menC;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	2834267	2835124	.	-	.	ID=gene2502;Name=menB;gbkey=Gene;gene=menB;gene_biotype=protein_coding;locus_tag=YPO2525
AL590842.1	EMBL	CDS	2834267	2835124	.	-	0	ID=cds2460;Parent=gene2502;Dbxref=GOA:Q74T55,InterPro:IPR001753,InterPro:IPR010198,InterPro:IPR014748,InterPro:IPR018376,InterPro:IPR029045,UniProtKB/TrEMBL:Q74T55,NCBI_GP:CAL21151.1;Name=CAL21151.1;Note=Similar to Escherichia coli naphthoate synthase menB SW:MENB_ECOLI (P27290) (285 aa) fasta scores: E(): 0%2C 93.3%25 id in 285 aa%2C and to Pasteurella multocida possible naphthoate synthase MenB TR:AAK03180 (EMBL:AE006150) (285 aa) fasta scores: E(): 0%2C 86.7%25 id in 285 aa;gbkey=CDS;gene=menB;inference=similar to sequence:INSDC:AE006150;product=naphthoate synthase;protein_id=CAL21151.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2834507	2835022	.	-	.	ID=id5946;Note=Pfam match to entry PF00378 ECH%2C Enoyl-CoA hydratase/isomerase family%2C score 247.70%2C E-value 1.7e-70;gbkey=misc_feature;gene=menB;inference=protein motif:PF00378
AL590842.1	EMBL	sequence_feature	2834696	2834758	.	-	.	ID=id5947;Note=PS00166 Enoyl-CoA hydratase/isomerase signature.;gbkey=misc_feature;gene=menB;inference=protein motif:ProSite:PS00166
AL590842.1	EMBL	gene	2835138	2835956	.	-	.	ID=gene2503;Name=YPO2526;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2526
AL590842.1	EMBL	CDS	2835138	2835956	.	-	0	ID=cds2461;Parent=gene2503;Dbxref=GOA:Q7CJ75,InterPro:IPR022485,InterPro:IPR029058,NCBI_GP:CAL21152.1;Name=CAL21152.1;Note=Similar to Pseudomonas aeruginosa esterase (probable lipase) PA2949 TR:Q9KJG6 (EMBL:AF170828) (315 aa) fasta scores: E(): 7.8e-05%2C 28.5%25 id in 253 aa%2C and to Escherichia coli hypothetical protein YfbB TR:P76932 (EMBL:D90857) (270 aa) fasta scores: E(): 0%2C 50.8%25 id in 246 aa;gbkey=CDS;inference=similar to sequence:INSDC:D90857;product=conserved hypothetical protein;protein_id=CAL21152.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2835180	2835815	.	-	.	ID=id5948;Note=Pfam match to entry PF00561 abhydrolase%2C alpha/beta hydrolase fold%2C score 37.90%2C E-value 2.2e-07;gbkey=misc_feature;inference=protein motif:PF00561
AL590842.1	EMBL	gene	2835953	2837656	.	-	.	ID=gene2504;Name=menD;gbkey=Gene;gene=menD;gene_biotype=protein_coding;locus_tag=YPO2527
AL590842.1	EMBL	CDS	2835953	2837656	.	-	0	ID=cds2462;Parent=gene2504;Dbxref=GOA:Q7CJ76,InterPro:IPR004433,InterPro:IPR011766,InterPro:IPR012001,InterPro:IPR029061,NCBI_GP:CAL21153.1;Name=CAL21153.1;Note=Similar to Escherichia coli menaquinone biosynthesis protein%2C 2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylate synthase%2C MenD SW:MEND_ECOLI (P17109) (556 aa) fasta scores: E(): 0%2C 69.8%25 id in 560 aa%2C and to Haemophilus influenzae menaquinone biosynthesis protein MenD SW:MEND_HAEIN (P44612) (568 aa) fasta scores: E(): 0%2C 48.2%25 id in 571 aa;gbkey=CDS;gene=menD;product=menaquinone biosynthesis protein;protein_id=CAL21153.1;transl_table=11
AL590842.1	EMBL	gene	2837884	2839251	.	-	.	ID=gene2505;Name=menF;gbkey=Gene;gene=menF;gene_biotype=protein_coding;locus_tag=YPO2528
AL590842.1	EMBL	CDS	2837884	2839251	.	-	0	ID=cds2463;Parent=gene2505;Dbxref=GOA:Q0WDZ8,InterPro:IPR004561,InterPro:IPR005801,InterPro:IPR015890,UniProtKB/TrEMBL:Q0WDZ8,NCBI_GP:CAL21154.1;Name=CAL21154.1;Note=Similar to Escherichia coli menaquinone-specific isochorismate synthase MenF SW:MENF_ECOLI (P38051) (431 aa) fasta scores: E(): 0%2C 51.7%25 id in 449 aa%2C and to Vibrio cholerae menaquinone-specific isochorismate synthase VC1976 TR:Q9KQM2 (EMBL:AE004272) (435 aa) fasta scores: E(): 0%2C44.7%25 id in 409 aa;gbkey=CDS;gene=menF;inference=similar to sequence:INSDC:AE004272;product=menaquinone-specific isochorismate synthase;protein_id=CAL21154.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2837917	2838696	.	-	.	ID=id5949;Note=Pfam match to entry PF00425 chorismate_bind%2Cchorismate binding enzyme%2C score 259.40%2C E-value 2.2e-74;gbkey=misc_feature;gene=menF;inference=protein motif:PF00425
AL590842.1	EMBL	gene	2839779	2840423	.	-	.	ID=gene2506;Name=YPO2530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2530
AL590842.1	EMBL	CDS	2839779	2840423	.	-	0	ID=cds2464;Parent=gene2506;Dbxref=UniProtKB/TrEMBL:Q7CJ77,NCBI_GP:CAL21155.1;Name=CAL21155.1;Note=Similar to Rhizobium leguminosarum rhizosphere-expressed protein RhiA SW:RHIA_RHILV (Q03313) (231 aa) fasta scores: E(): 1.8e-29%2C 40.3%25 id in 206 aa%2Cand to Microcystis aeruginosa microcystin dependent protein MdpA TR:Q9L3N2 (EMBL:AJ271976) (329 aa) fasta scores: E(): 0.00018%2C 25.9%25 id in 197 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ271976;product=conserved hypothetical protein;protein_id=CAL21155.1;transl_table=11
AL590842.1	EMBL	gene	2840978	2841286	.	-	.	ID=gene2507;Name=elaB;gbkey=Gene;gene=elaB;gene_biotype=protein_coding;locus_tag=YPO2531
AL590842.1	EMBL	CDS	2840978	2841286	.	-	0	ID=cds2465;Parent=gene2507;Dbxref=InterPro:IPR010279,UniProtKB/TrEMBL:Q0WDZ6,NCBI_GP:CAL21156.1;Name=CAL21156.1;Note=Similar to Escherichia coli hypothetical protein ElaB SW:ELAB_ECOLI (P52084) (101 aa) fasta scores: E(): 1.5e-14%2C 50.0%25 id in 94 aa%2C and to Escherichia coli hypothetical protein YqjD SW:YQJD_ECOLI (P42617) (101 aa) fasta scores: E(): 6.1e-12%2C 46.7%25 id in 92 aa;gbkey=CDS;gene=elaB;product=putative membrane protein;protein_id=CAL21156.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2840987	2841043	.	-	.	ID=id5950;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=elaB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2841934	2842146	.	-	.	ID=gene2508;Name=YPO2532;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2532
AL590842.1	EMBL	CDS	2841934	2842146	.	-	0	ID=cds2466;Parent=gene2508;Dbxref=UniProtKB/TrEMBL:Q74T48,NCBI_GP:CAL21157.1;Name=CAL21157.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21157.1;transl_table=11
AL590842.1	EMBL	gene	2842212	2844089	.	-	.	ID=gene2509;Name=edd;gbkey=Gene;gene=edd;gene_biotype=protein_coding;locus_tag=YPO2533
AL590842.1	EMBL	CDS	2842212	2844089	.	-	0	ID=cds2467;Parent=gene2509;Dbxref=GOA:Q7CJ78,InterPro:IPR000581,InterPro:IPR004786,InterPro:IPR015928,InterPro:IPR020558,UniProtKB/TrEMBL:Q7CJ78,NCBI_GP:CAL21158.1;Name=CAL21158.1;Note=Similar to Escherichia coli phosphogluconate dehydratase Edd SW:EDD_ECOLI (P25530) (603 aa) fasta scores: E(): 0%2C 75.8%25 id in 623 aa%2C and to Pseudomonas aeruginosa phosphogluconate dehydratase Edd SW:EDD_PSEAE (P31961) (610 aa) fasta scores: E(): 0%2C 60.9%25 id in 622 aa;gbkey=CDS;gene=edd;product=phosphogluconate dehydratase;protein_id=CAL21158.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2842353	2843801	.	-	.	ID=id5951;Note=Pfam match to entry PF00920 ILVD_EDD%2C Dehydratase family%2C score 910.90%2C E-value 3.6e-270;gbkey=misc_feature;gene=edd;inference=protein motif:PF00920
AL590842.1	EMBL	sequence_feature	2842476	2842511	.	-	.	ID=id5952;Note=PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2.;gbkey=misc_feature;gene=edd;inference=protein motif:ProSite:PS00887
AL590842.1	EMBL	sequence_feature	2843592	2843624	.	-	.	ID=id5953;Note=PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1.;gbkey=misc_feature;gene=edd;inference=protein motif:ProSite:PS00886
AL590842.1	EMBL	gene	2844093	2844608	.	-	.	ID=gene2510;Name=YPO2534;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2534
AL590842.1	EMBL	CDS	2844093	2844608	.	-	0	ID=cds2468;Parent=gene2510;Dbxref=InterPro:IPR005624,InterPro:IPR010371,NCBI_GP:CAL21159.1;Name=CAL21159.1;Note=Similar to Rhizobium meliloti hypothetical protein YpmI SW:YPMI_RHIME (P29953) (164 aa) fasta scores: E(): 1e-21%2C 39.5%25 id in 162 aa%2C and to Zymomonas mobilis hypothetical protein ZM10ORF2 TR:Q9XBS9 (EMBL:AF157493) (186 aa) fasta scores: E(): 1.3e-20%2C 39.2%25 id in 166 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF157493;product=conserved hypothetical protein;protein_id=CAL21159.1;transl_table=11
AL590842.1	EMBL	gene	2844638	2845969	.	-	.	ID=gene2511;Name=YPO2535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2535
AL590842.1	EMBL	CDS	2844638	2845969	.	-	0	ID=cds2469;Parent=gene2511;Dbxref=GOA:Q0WDZ2,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q0WDZ2,NCBI_GP:CAL21160.1;Name=CAL21160.1;Note=Similar to Burkholderia cepacia phthalate transporter OphD TR:Q9RPP3 (EMBL:AF152094) (448 aa) fasta scores: E(): 0%2C 28.2%25 id in 429 aa%2C and to Pseudomonas aeruginosa probable 2-ketogluconate transporter PA2262 TR:AAG05650 (EMBL:AE004652) (435 aa) fasta scores: E(): 0%2C32.3%25 id in 427 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF152094;product=putative sugar transporter;protein_id=CAL21160.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2844680	2845918	.	-	.	ID=id5954;Note=Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporter%2C score -30.60%2C E-value 9.6e-06;gbkey=misc_feature;inference=protein motif:PF00083
AL590842.1	EMBL	sequence_feature	2844719	2844775	.	-	.	ID=id5955;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2844791	2844856	.	-	.	ID=id5956;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2844902	2844967	.	-	.	ID=id5957;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2844989	2845045	.	-	.	ID=id5958;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2845076	2845141	.	-	.	ID=id5959;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2845391	2845456	.	-	.	ID=id5960;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2845472	2845537	.	-	.	ID=id5961;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2845577	2845642	.	-	.	ID=id5962;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2845658	2845714	.	-	.	ID=id5963;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2845754	2845819	.	-	.	ID=id5964;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2845865	2845930	.	-	.	ID=id5965;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2846500	2847450	.	-	.	ID=gene2512;Name=YPO2536;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2536
AL590842.1	EMBL	CDS	2846500	2847450	.	-	0	ID=cds2470;Parent=gene2512;Dbxref=GOA:Q7CJ80,InterPro:IPR006139,InterPro:IPR006140,InterPro:IPR016040,UniProtKB/TrEMBL:Q7CJ80,NCBI_GP:CAL21161.1;Name=CAL21161.1;Note=Similar to Hyphomicrobium methylovorum hydroxypyruvate reductase TR:Q59463 (EMBL:D31857) (322 aa) fasta scores: E(): 2.5e-26%2C 30.3%25 id in 320 aa%2C and to the eukaryotic Arabidopsis thaliana putative D-isomer specific 2-hydroxyacid dehydrogenase F19K16.17 TR:Q9SQP4 (EMBL:AC011717) (313 aa) fasta scores: E(): 0%2C 41.0%25 id in 307 aa;gbkey=CDS;inference=similar to sequence:INSDC:D31857;product=putative D-isomer specific 2-hydroxyacid dehydrogenase family protein;protein_id=CAL21161.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2846608	2847216	.	-	.	ID=id5966;Note=Pfam match to entry PF00389 2-Hacid_DH%2C D-isomer specific 2-hydroxyacid dehydrogenases%2C score 162.40%2CE-value 3.5e-66;gbkey=misc_feature;inference=protein motif:PF00389
AL590842.1	EMBL	sequence_feature	2846923	2847006	.	-	.	ID=id5967;Note=PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00065
AL590842.1	EMBL	gene	2847916	2848908	.	-	.	ID=gene2513;Name=YPO2537;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2537
AL590842.1	EMBL	CDS	2847916	2848908	.	-	0	ID=cds2471;Parent=gene2513;Dbxref=GOA:Q7CJ81,InterPro:IPR000843,InterPro:IPR001761,InterPro:IPR010982,InterPro:IPR028082,UniProtKB/TrEMBL:Q7CJ81,NCBI_GP:CAL21162.1;Name=CAL21162.1;Note=Similar to Escherichia coli L-idonate regulatory protein IdnR SW:IDNR_ECOLI (P39343) (332 aa) fasta scores: E(): 0%2C 49.1%25 id in 332 aa%2C and to Escherichia coli gluconate utilization system Gnt-I transcriptional repressor GntR SW:GNTR_ECOLI (P46860) (331 aa) fasta scores: E(): 0%2C 44.4%25 id in 331 aa;gbkey=CDS;product=putative LacI-family transcriptional regulatory protein;protein_id=CAL21162.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2848006	2848725	.	-	.	ID=id5968;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 80.00%2C E-value 5e-20;gbkey=misc_feature;inference=protein motif:PF00532
AL590842.1	EMBL	sequence_feature	2848816	2848899	.	-	.	ID=id5969;Note=Pfam match to entry PF00356 lacI%2C Bacterial regulatory proteins%2C lacI family%2C score 43.50%2C E-value 7.2e-11;gbkey=misc_feature;inference=protein motif:PF00356
AL590842.1	EMBL	sequence_feature	2848828	2848893	.	-	.	ID=id5970;Note=Predicted helix-turn-helix motif with score 2165 (+6.56 SD) at aa 6-27%2C sequence VTLQDIALLAGVTKMTVSRYLR;gbkey=misc_feature
AL590842.1	EMBL	sequence_feature	2848831	2848887	.	-	.	ID=id5971;Note=PS00356 Bacterial regulatory proteins%2C lacI family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00356
AL590842.1	EMBL	gene	2849377	2850660	.	+	.	ID=gene2514;Name=YPO2538;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2538
AL590842.1	EMBL	CDS	2849377	2850660	.	+	0	ID=cds2472;Parent=gene2514;Dbxref=GOA:Q7CJ82,InterPro:IPR003790,InterPro:IPR013781,InterPro:IPR017853,UniProtKB/TrEMBL:Q7CJ82,NCBI_GP:CAL21163.1;Name=CAL21163.1;Note=Similar to Escherichia coli hypothetical protein TR:P76130 (EMBL:AE000246) (439 aa) fasta scores: E(): 0%2C60.0%25 id in 422 aa%2C and to Bacillus subtilis hypothetical protein YngK TR:O35015 (EMBL:Z99113) (510 aa) fasta scores: E(): 0%2C 42.8%25 id in 367 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z99113;product=putative lipoprotein;protein_id=CAL21163.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2849416	2849448	.	+	.	ID=id5972;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	2851419	2852183	.	+	.	ID=gene2515;Name=idnO;gbkey=Gene;gene=idnO;gene_biotype=protein_coding;locus_tag=YPO2539
AL590842.1	EMBL	CDS	2851419	2852183	.	+	0	ID=cds2473;Parent=gene2515;Dbxref=GOA:Q0WDY8,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:Q0WDY8,NCBI_GP:CAL21164.1;Name=CAL21164.1;Note=Similar to Escherichia coli gluconate 5-dehydrogenase IdnO SW:IDNO_ECOLI (P39345) (254 aa) fasta scores: E(): 0%2C 79.1%25 id in 254 aa%2C and to Gluconobacter oxydans gluconate 5-dehydrogenase SW:GNO_GLUOX (P50199) (256 aa) fasta scores: E(): 0%2C 56.3%25 id in 252 aa;gbkey=CDS;gene=idnO;product=gluconate 5-dehydrogenase;protein_id=CAL21164.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2851446	2852000	.	+	.	ID=id5973;Note=Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase%2C score 271.00%2C E-value 1.5e-77;gbkey=misc_feature;gene=idnO;inference=protein motif:PF00106
AL590842.1	EMBL	sequence_feature	2851851	2851937	.	+	.	ID=id5974;Note=PS00061 Short-chain dehydrogenases/reductases family signature.;gbkey=misc_feature;gene=idnO;inference=protein motif:ProSite:PS00061
AL590842.1	EMBL	sequence_feature	2852064	2852156	.	+	.	ID=id5975;Note=Pfam match to entry PF00678 adh_short_C2%2C Short chain dehydrogenase/reductase C-terminus%2C score 40.20%2CE-value 1e-09;gbkey=misc_feature;gene=idnO;inference=protein motif:PF00678
AL590842.1	EMBL	gene	2852232	2852768	.	+	.	ID=gene2516;Name=gntV;gbkey=Gene;gene=gntV;gene_biotype=protein_coding;gene_synonym=idnK;locus_tag=YPO2540
AL590842.1	EMBL	CDS	2852232	2852768	.	+	0	ID=cds2474;Parent=gene2516;Dbxref=GOA:Q7CJ83,InterPro:IPR000623,InterPro:IPR006001,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CJ83,NCBI_GP:CAL21165.1;Name=CAL21165.1;Note=Similar to Escherichia coli thermosensitive gluconokinase IdnK SW:IDNK_ECOLI (P39208) (187 aa) fasta scores: E(): 0%2C 59.1%25 id in 176 aa%2C and to Vibrio cholerae thermoresistant gluconokinase VC0287 TR:Q9KV70 (EMBL:AE004117) (171 aa) fasta scores: E(): 0%2C 60.2%25 id in 166 aa%2C and to Escherichia coli thermoresistant gluconokinase GntK SW:GNTK_ECOLI (P46859) (175 aa) fasta scores: E(): 1.5e-31%2C 51.3%25 id in 160 aa. Similar to YPO3953 (66.3%25 identity in 160 aa overlap).;gbkey=CDS;gene=gntV;inference=similar to sequence:INSDC:AE004117;product=putative thermosensitive gluconokinase;protein_id=CAL21165.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2852259	2852282	.	+	.	ID=id5976;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=gntV;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2852846	2853313	.	+	.	ID=gene2517;Name=YPO2541;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2541
AL590842.1	EMBL	CDS	2852846	2853313	.	+	0	ID=cds2475;Parent=gene2517;Dbxref=InterPro:IPR004375,UniProtKB/TrEMBL:Q74T40,NCBI_GP:CAL21166.1;Name=CAL21166.1;Note=Similar to Escherichia coli hypothetical protein YiaL SW:YIAL_ECOLI (P37673) (155 aa) fasta scores: E(): 5.8e-12%2C 34.0%25 id in 141 aa%2C and to Escherichia coli protein Yjgk SW:YJGK_ECOLI (P39335) (150 aa) fasta scores: E(): 6.4e-11%2C 34.5%25 id in 142 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21166.1;transl_table=11
AL590842.1	EMBL	gene	2853651	2854841	.	-	.	ID=gene2518;Name=YPO2542;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2542
AL590842.1	EMBL	CDS	2853651	2854841	.	-	0	ID=cds2476;Parent=gene2518;Dbxref=UniProtKB/TrEMBL:Q0WDY5,NCBI_GP:CAL21167.1;Name=CAL21167.1;Note=no significant database hits to the full length CDS. Similar to internal region of Bacillus subtilis hypothetical proteink protein YkoU TR:O34398 (EMBL:Z99110) (611 aa) fasta scores: E(): 4.4%2C 21.4%25 id in 215 aa. CDS DNA has a low G+C content%2C 35.68%25.;gbkey=CDS;inference=similar to sequence:INSDC:Z99110;product=hypothetical protein;protein_id=CAL21167.1;transl_table=11
AL590842.1	EMBL	gene	2855077	2856540	.	-	.	ID=gene2519;Name=nuoN;gbkey=Gene;gene=nuoN;gene_biotype=protein_coding;locus_tag=YPO2543
AL590842.1	EMBL	CDS	2855077	2856540	.	-	0	ID=cds2477;Parent=gene2519;Dbxref=GOA:Q7CJ84,InterPro:IPR001750,InterPro:IPR010096,NCBI_GP:CAL21168.1;Name=CAL21168.1;Note=Similar to Escherichia coli NADH dehydrogenase I chain N NuoN SW:NUON_ECOLI (P33608) (425 aa) fasta scores: E(): 0%2C 79.9%25 id in 427 aa%2C and to Pseudomonas aeruginosa NADH dehydrogenase I chain N NuoN TR:AAG06037 (EMBL:AE004693) (486 aa) fasta scores: E(): 0%2C 62.7%25 id in 482 aa. CDS is the same length as the P. aeruginosa orthologue%2C but had an N-termial extention in comparison to the E. coli orthologue. Possible alternative translational start.;gbkey=CDS;gene=nuoN;inference=similar to sequence:INSDC:AE004693;product=NADH dehydrogenase I chain N;protein_id=CAL21168.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2855128	2855193	.	-	.	ID=id5977;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2855257	2855313	.	-	.	ID=id5978;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2855269	2856177	.	-	.	ID=id5979;Note=Pfam match to entry PF00361 oxidored_q1%2CNADH-Ubiquinone/plastoquinone (complex I)%2C various chains%2Cscore 299.70%2C E-value 3.6e-86;gbkey=misc_feature;gene=nuoN;inference=protein motif:PF00361
AL590842.1	EMBL	sequence_feature	2855359	2855424	.	-	.	ID=id5980;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2855488	2855553	.	-	.	ID=id5981;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2855584	2855649	.	-	.	ID=id5982;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2855671	2855736	.	-	.	ID=id5983;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2855767	2855832	.	-	.	ID=id5984;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2855872	2855937	.	-	.	ID=id5985;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2855998	2856063	.	-	.	ID=id5986;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2856103	2856159	.	-	.	ID=id5987;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2856175	2856225	.	-	.	ID=id5988;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2856247	2856312	.	-	.	ID=id5989;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2856373	2856438	.	-	.	ID=id5990;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2856454	2856510	.	-	.	ID=id5991;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2856547	2858079	.	-	.	ID=gene2520;Name=nuoM;gbkey=Gene;gene=nuoM;gene_biotype=protein_coding;locus_tag=YPO2544
AL590842.1	EMBL	CDS	2856547	2858079	.	-	0	ID=cds2478;Parent=gene2520;Dbxref=GOA:Q7CJ85,InterPro:IPR001750,InterPro:IPR003918,InterPro:IPR010227,UniProtKB/TrEMBL:Q7CJ85,NCBI_GP:CAL21169.1;Name=CAL21169.1;Note=Similar to Escherichia coli SW:NUOM_ECOLI (P31978) (509 aa) fasta scores: E(): 0%2C 85.6%25 id in 513 aa%2C and to Pseudomonas aeruginosa NADH dehydrogenase I chain M NuoM TR:AAG06036 (EMBL:AE004693) (509 aa) fasta scores: E(): 0%2C74.9%25 id in 502 aa;gbkey=CDS;gene=nuoM;inference=similar to sequence:INSDC:AE004693;product=NADH dehydrogenase I chain M;protein_id=CAL21169.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2856631	2856687	.	-	.	ID=id5992;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2856760	2857683	.	-	.	ID=id5993;Note=Pfam match to entry PF00361 oxidored_q1%2CNADH-Ubiquinone/plastoquinone (complex I)%2C various chains%2Cscore 265.50%2C E-value 7.3e-76;gbkey=misc_feature;gene=nuoM;inference=protein motif:PF00361
AL590842.1	EMBL	sequence_feature	2856769	2856834	.	-	.	ID=id5994;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2856865	2856930	.	-	.	ID=id5995;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2856991	2857056	.	-	.	ID=id5996;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2857072	2857137	.	-	.	ID=id5997;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2857159	2857215	.	-	.	ID=id5998;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2857261	2857326	.	-	.	ID=id5999;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2857348	2857413	.	-	.	ID=id6000;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2857474	2857539	.	-	.	ID=id6001;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2857603	2857668	.	-	.	ID=id6002;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2857681	2857734	.	-	.	ID=id6003;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2857771	2857836	.	-	.	ID=id6004;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2857933	2857998	.	-	.	ID=id6005;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2858020	2858064	.	-	.	ID=id6006;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2858119	2859963	.	-	.	ID=gene2521;Name=nuoL;gbkey=Gene;gene=nuoL;gene_biotype=protein_coding;locus_tag=YPO2545
AL590842.1	EMBL	CDS	2858119	2859963	.	-	0	ID=cds2479;Parent=gene2521;Dbxref=GOA:Q7CJ86,InterPro:IPR001516,InterPro:IPR001750,InterPro:IPR003945,InterPro:IPR018393,UniProtKB/TrEMBL:Q7CJ86,NCBI_GP:CAL21170.1;Name=CAL21170.1;Note=Similar to Escherichia coli NADH dehydrogenase I chain L NuoL SW:NUOL_ECOLI (P33607) (613 aa) fasta scores: E(): 0%2C 79.6%25 id in 613 aa%2C and to Pseudomonas aeruginosa NADH dehydrogenase I chain L NuoL TR:AAG06035 (EMBL:AE004693) (615 aa) fasta scores: E(): 0%2C 70.7%25 id in 615 aa;gbkey=CDS;gene=nuoL;inference=similar to sequence:INSDC:AE004693;product=NADH dehydrogenase I chain L;protein_id=CAL21170.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2858125	2858178	.	-	.	ID=id6007;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2858416	2858481	.	-	.	ID=id6008;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2858527	2858592	.	-	.	ID=id6009;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2858653	2858718	.	-	.	ID=id6010;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2858677	2859558	.	-	.	ID=id6011;Note=Pfam match to entry PF00361 oxidored_q1%2CNADH-Ubiquinone/plastoquinone (complex I)%2C various chains%2Cscore 394.00%2C E-value 1.4e-114;gbkey=misc_feature;gene=nuoL;inference=protein motif:PF00361
AL590842.1	EMBL	sequence_feature	2858764	2858829	.	-	.	ID=id6012;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2858893	2858958	.	-	.	ID=id6013;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2858971	2859036	.	-	.	ID=id6014;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2859058	2859123	.	-	.	ID=id6015;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2859154	2859210	.	-	.	ID=id6016;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2859250	2859315	.	-	.	ID=id6017;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2859376	2859441	.	-	.	ID=id6018;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2859481	2859546	.	-	.	ID=id6019;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2859559	2859615	.	-	.	ID=id6020;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2859589	2859774	.	-	.	ID=id6021;Note=Pfam match to entry PF00662 oxidored_q1_N%2CNADH-Ubiquinone oxidoreductase (complex I)%2C chain 5 N-terminus%2C score 108.10%2C E-value 1.7e-28;gbkey=misc_feature;gene=nuoL;inference=protein motif:PF00662
AL590842.1	EMBL	sequence_feature	2859637	2859702	.	-	.	ID=id6022;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2859814	2859879	.	-	.	ID=id6023;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2859901	2859951	.	-	.	ID=id6024;Note=one of 16 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2859960	2860262	.	-	.	ID=gene2522;Name=nuoK;gbkey=Gene;gene=nuoK;gene_biotype=protein_coding;locus_tag=YPO2546
AL590842.1	EMBL	CDS	2859960	2860262	.	-	0	ID=cds2480;Parent=gene2522;Dbxref=GOA:Q7CJ87,InterPro:IPR001133,NCBI_GP:CAL21171.1;Name=CAL21171.1;Note=Similar to Escherichia coli NADH dehydrogenase I chain K NuoK SW:NUOK_ECOLI (P33606) (100 aa) fasta scores: E(): 0%2C 89.0%25 id in 100 aa%2C and to Pseudomonas aeruginosa NADH dehydrogenase I chain K NuoK TR:AAG06034 (EMBL:AE004693) (102 aa) fasta scores: E(): 1.9e-29%2C 77.8%25 id in 99 aa;gbkey=CDS;gene=nuoK;inference=similar to sequence:INSDC:AE004693;product=NADH dehydrogenase i chain k;protein_id=CAL21171.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2859963	2860259	.	-	.	ID=id6025;Note=Pfam match to entry PF00420 oxidored_q2%2CNADH-ubiquinone/plastoquinone oxidoreductase chain 4L%2Cscore 80.40%2C E-value 6.1e-21;gbkey=misc_feature;gene=nuoK;inference=protein motif:PF00420
AL590842.1	EMBL	sequence_feature	2860017	2860082	.	-	.	ID=id6026;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoK;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2860113	2860178	.	-	.	ID=id6027;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoK;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2860194	2860250	.	-	.	ID=id6028;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoK;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2860259	2860804	.	-	.	ID=gene2523;Name=nuoJ;gbkey=Gene;gene=nuoJ;gene_biotype=protein_coding;locus_tag=YPO2547
AL590842.1	EMBL	CDS	2860259	2860804	.	-	0	ID=cds2481;Parent=gene2523;Dbxref=GOA:Q7CJ88,InterPro:IPR001457,UniProtKB/TrEMBL:Q7CJ88,NCBI_GP:CAL21172.1;Name=CAL21172.1;Note=Similar to Escherichia coli NADH dehydrogenase I chain J NuoJ SW:NUOJ_ECOLI (P33605) (184 aa) fasta scores: E(): 0%2C 76.1%25 id in 184 aa%2C and to Pseudomonas aeruginosa NADH dehydrogenase I chain J NuoJ TR:AAG06033 (EMBL:AE004693) (166 aa) fasta scores: E(): 0%2C 72.8%25 id in 162 aa;gbkey=CDS;gene=nuoJ;inference=similar to sequence:INSDC:AE004693;product=NADH dehydrogenase I chain J;protein_id=CAL21172.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2860328	2860804	.	-	.	ID=id6029;Note=Pfam match to entry PF00499 oxidored_q3%2CNADH-ubiquinone/plastoquinone oxidoreductase chain 6%2C score 56.70%2C E-value 4.9e-13%3B~one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoJ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2860817	2861359	.	-	.	ID=gene2524;Name=nuoI;gbkey=Gene;gene=nuoI;gene_biotype=protein_coding;locus_tag=YPO2548
AL590842.1	EMBL	CDS	2860817	2861359	.	-	0	ID=cds2482;Parent=gene2524;Dbxref=GOA:Q7CJ89,InterPro:IPR001450,InterPro:IPR010226,InterPro:IPR017896,InterPro:IPR017900,NCBI_GP:CAL21173.1;Name=CAL21173.1;Note=Similar to Escherichia coli NADH dehydrogenase I chain I NuoI SW:NUOI_ECOLI (P33604) (180 aa) fasta scores: E(): 0%2C 95.0%25 id in 180 aa%2C and to Pseudomonas aeruginosa NADH dehydrogenase I chain I NuoI TR:AAG06032 (EMBL:AE004693) (182 aa) fasta scores: E(): 0%2C 85.1%25 id in 175 aa;gbkey=CDS;gene=nuoI;inference=similar to sequence:INSDC:AE004693;product=NADH Dehydrogenase I chain I;protein_id=CAL21173.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2861015	2861086	.	-	.	ID=id6030;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 38.10%2C E-value 2.1e-07;gbkey=misc_feature;gene=nuoI;inference=protein motif:PF00037
AL590842.1	EMBL	sequence_feature	2861030	2861065	.	-	.	ID=id6031;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;gene=nuoI;inference=protein motif:ProSite:PS00198
AL590842.1	EMBL	sequence_feature	2861132	2861203	.	-	.	ID=id6032;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 21.90%2C E-value 0.001;gbkey=misc_feature;gene=nuoI;inference=protein motif:PF00037
AL590842.1	EMBL	sequence_feature	2861147	2861182	.	-	.	ID=id6033;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;gene=nuoI;inference=protein motif:ProSite:PS00198
AL590842.1	EMBL	gene	2861374	2862351	.	-	.	ID=gene2525;Name=nuoH;gbkey=Gene;gene=nuoH;gene_biotype=protein_coding;locus_tag=YPO2549
AL590842.1	EMBL	CDS	2861374	2862351	.	-	0	ID=cds2483;Parent=gene2525;Dbxref=GOA:Q8ZDL3,InterPro:IPR001694,InterPro:IPR018086,NCBI_GP:CAL21174.1;Name=CAL21174.1;Note=Similar to Escherichia coli NADH dehydrogenase I chain H NuoH SW:NUOH_ECOLI (P33603) (325 aa) fasta scores: E(): 0%2C 92.3%25 id in 325 aa%2C and to Salmonella typhimurium NADH dehydrogenase I chain H NuoH SW:NUOH_SALTY (Q60010) (325 aa) fasta scores: E(): 0%2C 91.4%25 id in 325 aa;gbkey=CDS;gene=nuoH;inference=protein motif:TMHMM:2.0;product=NADH dehydrogenase I chain H;protein_id=CAL21174.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2861386	2862321	.	-	.	ID=id6034;Note=Pfam match to entry PF00146 NADHdh%2C NADH dehydrogenases%2C score 586.30%2C E-value 1.9e-172;gbkey=misc_feature;gene=nuoH;inference=protein motif:PF00146
AL590842.1	EMBL	sequence_feature	2861386	2861451	.	-	.	ID=id6035;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2861497	2861562	.	-	.	ID=id6036;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2861584	2861649	.	-	.	ID=id6037;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2861680	2861721	.	-	.	ID=id6038;Note=PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2.;gbkey=misc_feature;gene=nuoH;inference=protein motif:ProSite:PS00668
AL590842.1	EMBL	sequence_feature	2861728	2861793	.	-	.	ID=id6039;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2861830	2861895	.	-	.	ID=id6040;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2861941	2862006	.	-	.	ID=id6041;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2862043	2862108	.	-	.	ID=id6042;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2862139	2862186	.	-	.	ID=id6043;Note=PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1.;gbkey=misc_feature;gene=nuoH;inference=protein motif:ProSite:PS00667
AL590842.1	EMBL	sequence_feature	2862250	2862315	.	-	.	ID=id6044;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2862348	2865092	.	-	.	ID=gene2526;Name=nuoG;gbkey=Gene;gene=nuoG;gene_biotype=protein_coding;locus_tag=YPO2550
AL590842.1	EMBL	CDS	2862348	2865092	.	-	0	ID=cds2484;Parent=gene2526;Dbxref=GOA:Q8ZDL2,InterPro:IPR000283,InterPro:IPR001041,InterPro:IPR006656,InterPro:IPR006657,InterPro:IPR006963,InterPro:IPR009010,InterPro:IPR010228,InterPro:IPR012675,InterPro:IPR019574,NCBI_GP:CAL21175.1;Name=CAL21175.1;Note=Similar to Salmonella typhimurium NADH dehydrogenase I chain G NuoG SW:NUOG_SALTY (P33900) (907 aa) fasta scores: E(): 0%2C 80.7%25 id in 913 aa%2C and to Escherichia coli NADH dehydrogenase I chain G NuoG SW:NUOG_ECOLI (P33602) (907 aa) fasta scores: E(): 0%2C 79.8%25 id in 913 aa;gbkey=CDS;gene=nuoG;product=NADH dehydrogenase I chain G;protein_id=CAL21175.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2864613	2864645	.	-	.	ID=id6045;Note=PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3.;gbkey=misc_feature;gene=nuoG;inference=protein motif:ProSite:PS00643
AL590842.1	EMBL	sequence_feature	2864748	2864786	.	-	.	ID=id6046;Note=PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2.;gbkey=misc_feature;gene=nuoG;inference=protein motif:ProSite:PS00642
AL590842.1	EMBL	sequence_feature	2864874	2865089	.	-	.	ID=id6047;Note=Pfam match to entry PF00111 fer2%2C 2Fe-2S iron-sulfur cluster binding domains%2C score 46.70%2C E-value 5.2e-10;gbkey=misc_feature;gene=nuoG;inference=protein motif:PF00111
AL590842.1	EMBL	sequence_feature	2864949	2865002	.	-	.	ID=id6048;Note=PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1.;gbkey=misc_feature;gene=nuoG;inference=protein motif:ProSite:PS00641
AL590842.1	EMBL	gene	2865179	2866564	.	-	.	ID=gene2527;Name=nuoF;gbkey=Gene;gene=nuoF;gene_biotype=protein_coding;locus_tag=YPO2551
AL590842.1	EMBL	CDS	2865179	2866564	.	-	0	ID=cds2485;Parent=gene2527;Dbxref=GOA:Q7CJ91,InterPro:IPR001949,InterPro:IPR011537,InterPro:IPR011538,InterPro:IPR019554,InterPro:IPR019575,UniProtKB/TrEMBL:Q7CJ91,NCBI_GP:CAL21176.1;Name=CAL21176.1;Note=Similar to Escherichia coli NADH dehydrogenase I chain F NuoF SW:NUOF_ECOLI (P31979) (445 aa) fasta scores: E(): 0%2C 89.0%25 id in 453 aa%2C and to Salmonella typhimurium NADH dehydrogenase I chain F NuoF SW:NUOF_SALTY (P33901) (431 aa) fasta scores: E(): 0%2C 92.0%25 id in 401 aa;gbkey=CDS;gene=nuoF;product=NADH dehydrogenase I chain F;protein_id=CAL21176.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2865458	2865493	.	-	.	ID=id6049;Note=PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2.;gbkey=misc_feature;gene=nuoF;inference=protein motif:ProSite:PS00645
AL590842.1	EMBL	sequence_feature	2865629	2866495	.	-	.	ID=id6050;Note=Pfam match to entry PF01512 Complex1_51K%2CRespiratory-chain NADH dehydrogenase 51 Kd subunit%2C score 587.20%2C E-value 1e-172;gbkey=misc_feature;gene=nuoF;inference=protein motif:PF01512
AL590842.1	EMBL	sequence_feature	2865977	2866024	.	-	.	ID=id6051;Note=PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1.;gbkey=misc_feature;gene=nuoF;inference=protein motif:ProSite:PS00644
AL590842.1	EMBL	gene	2866561	2867079	.	-	.	ID=gene2528;Name=nuoE;gbkey=Gene;gene=nuoE;gene_biotype=protein_coding;locus_tag=YPO2552
AL590842.1	EMBL	CDS	2866561	2867079	.	-	0	ID=cds2486;Parent=gene2528;Dbxref=GOA:Q0WDX5,InterPro:IPR002023,InterPro:IPR012336,UniProtKB/TrEMBL:Q0WDX5,NCBI_GP:CAL21177.1;Name=CAL21177.1;Note=Similar to Escherichia coli NADH dehydrogenase I chain E NuoE SW:NUOE_ECOLI (P33601) (166 aa) fasta scores: E(): 0%2C 89.1%25 id in 156 aa%2C and to Salmonella typhimurium NADH dehydrogenase I chain E NuoE SW:NUOE_SALTY (P33903) (166 aa) fasta scores: E(): 0%2C 89.7%25 id in 156 aa;gbkey=CDS;gene=nuoE;product=NADH dehydrogenase I chain E;protein_id=CAL21177.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2866564	2867028	.	-	.	ID=id6052;Note=Pfam match to entry PF01257 complex1_24kD%2CRespiratory-chain NADH dehydrogenase 24 Kd subunit%2C score 329.60%2C E-value 3.5e-95;gbkey=misc_feature;gene=nuoE;inference=protein motif:PF01257
AL590842.1	EMBL	sequence_feature	2866639	2866695	.	-	.	ID=id6053;Note=PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature.;gbkey=misc_feature;gene=nuoE;inference=protein motif:ProSite:PS01099
AL590842.1	EMBL	gene	2867127	2868923	.	-	.	ID=gene2529;Name=nuoD;gbkey=Gene;gene=nuoD;gene_biotype=protein_coding;locus_tag=YPO2553
AL590842.1	EMBL	CDS	2867127	2868923	.	-	0	ID=cds2487;Parent=gene2529;Dbxref=GOA:Q7CJ92,InterPro:IPR001135,InterPro:IPR001268,InterPro:IPR010218,InterPro:IPR014029,InterPro:IPR022885,InterPro:IPR023062,InterPro:IPR029014,NCBI_GP:CAL21178.1;Name=CAL21178.1;Note=Similar to Escherichia coli NADH dehydrogenase I chain C/D NuoD SW:NUCD_ECOLI (P33599) (600 aa) fasta scores: E(): 0%2C 88.5%25 id in 599 aa%2C and to Pseudomonas aeruginosa NADH dehydrogenase I chain C%2CD NuoD TR:AAG06027 (EMBL:AE004692) (593 aa) fasta scores: E(): 0%2C 78.5%25 id in 578 aa;gbkey=CDS;gene=nuoD;inference=similar to sequence:INSDC:AE004692;product=NADH dehydrogenase I chain C/D;protein_id=CAL21178.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2867130	2867942	.	-	.	ID=id6054;Note=Pfam match to entry PF00346 complex1_49Kd%2CRespiratory-chain NADH dehydrogenase%2C 49 Kd subunit%2C score 591.60%2C E-value 6.3e-213;gbkey=misc_feature;gene=nuoD;inference=protein motif:PF00346
AL590842.1	EMBL	sequence_feature	2868138	2868173	.	-	.	ID=id6055;Note=PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature.;gbkey=misc_feature;gene=nuoD;inference=protein motif:ProSite:PS00535
AL590842.1	EMBL	sequence_feature	2868405	2868590	.	-	.	ID=id6056;Note=Pfam match to entry PF00329 complex1_30Kd%2CRespiratory-chain NADH dehydrogenase%2C 30 Kd subunit%2C score 132.90%2C E-value 5.9e-36;gbkey=misc_feature;gene=nuoD;inference=protein motif:PF00329
AL590842.1	EMBL	gene	2869064	2869741	.	-	.	ID=gene2530;Name=nuoB;gbkey=Gene;gene=nuoB;gene_biotype=protein_coding;locus_tag=YPO2554
AL590842.1	EMBL	CDS	2869064	2869741	.	-	0	ID=cds2488;Parent=gene2530;Dbxref=GOA:Q7CJ93,InterPro:IPR006137,InterPro:IPR006138,NCBI_GP:CAL21179.1;Name=CAL21179.1;Note=Similar to Escherichia coli NADH dehydrogenase I chain B NuoB SW:NUOB_ECOLI (P33598) (220 aa) fasta scores: E(): 0%2C 90.2%25 id in 225 aa%2C and to Erwinia carotovora NADH dehydrogenase I chain B NuoB SW:NUOB_ERWCA (O85274) (224 aa) fasta scores: E(): 0%2C 93.3%25 id in 225 aa;gbkey=CDS;gene=nuoB;product=NADH dehydrogenase I chain B;protein_id=CAL21179.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2869208	2869531	.	-	.	ID=id6057;Note=Pfam match to entry PF01058 oxidored_q6%2C NADH ubiquinone oxidoreductase%2C 20 Kd subunit%2C score 191.80%2CE-value 1.1e-53;gbkey=misc_feature;gene=nuoB;inference=protein motif:PF01058
AL590842.1	EMBL	sequence_feature	2869247	2869297	.	-	.	ID=id6058;Note=PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature.;gbkey=misc_feature;gene=nuoB;inference=protein motif:ProSite:PS01150
AL590842.1	EMBL	gene	2869843	2870337	.	-	.	ID=gene2531;Name=nuoA;gbkey=Gene;gene=nuoA;gene_biotype=protein_coding;locus_tag=YPO2555
AL590842.1	EMBL	CDS	2869843	2870337	.	-	0	ID=cds2489;Parent=gene2531;Dbxref=GOA:Q0WDX2,InterPro:IPR000440,InterPro:IPR023043,NCBI_GP:CAL21180.1;Name=CAL21180.1;Note=Similar to Escherichia coli NADH dehydrogenase I chain A NuoA SW:NUOA_ECOLI (P33597) (147 aa) fasta scores: E(): 0%2C 78.9%25 id in 142 aa%2C and to Erwinia carotovora NADH dehydrogenase I chain A NuoA SW:NUOA_ERWCA (O85273) (146 aa) fasta scores: E(): 0%2C 78.1%25 id in 146 aa;gbkey=CDS;gene=nuoA;inference=protein motif:TMHMM:2.0;product=NADH dehydrogenase I chain A;protein_id=CAL21180.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2869969	2870211	.	-	.	ID=id6059;Note=Pfam match to entry PF00507 oxidored_q4%2CNADH-ubiquinone/plastoquinone oxidoreductase%2C chain 3%2Cscore 138.10%2C E-value 3.8e-41;gbkey=misc_feature;gene=nuoA;inference=protein motif:PF00507
AL590842.1	EMBL	sequence_feature	2869978	2870043	.	-	.	ID=id6060;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2870074	2870139	.	-	.	ID=id6061;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2870146	2870193	.	-	.	ID=id6062;Note=PS00012 Phosphopantetheine attachment site.;gbkey=misc_feature;gene=nuoA;inference=protein motif:ProSite:PS00012
AL590842.1	EMBL	sequence_feature	2870227	2870292	.	-	.	ID=id6063;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=nuoA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2871021	2871953	.	-	.	ID=gene2532;Name=hexA;gbkey=Gene;gene=hexA;gene_biotype=protein_coding;gene_synonym=pecT;locus_tag=YPO2556
AL590842.1	EMBL	CDS	2871021	2871953	.	-	0	ID=cds2490;Parent=gene2532;Dbxref=GOA:Q7CJ94,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CJ94,NCBI_GP:CAL21181.1;Name=CAL21181.1;Note=Similar to Erwinia chrysanthemi pectinase gene transcriptional regulator PecT SW:PECT_ERWCH (P52662) (316 aa) fasta scores: E(): 0%2C 70.6%25 id in 293 aa%2C and to Erwinia carotovora subsp. carotovora regulator of motility and virulence determinants HexA TR:O85272 (EMBL:AF057063) (316 aa) fasta scores: E(): 0%2C 68.1%25 id in 298 aa;gbkey=CDS;gene=hexA;inference=similar to sequence:INSDC:AF057063;product=LysR-family transcriptional regulatory protein;protein_id=CAL21181.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2871495	2871917	.	-	.	ID=id6064;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 159.40%2C E-value 6.1e-44;gbkey=misc_feature;gene=hexA;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	2871783	2871875	.	-	.	ID=id6065;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature.;gbkey=misc_feature;gene=hexA;inference=protein motif:ProSite:PS00044
AL590842.1	EMBL	sequence_feature	2871813	2871878	.	-	.	ID=id6066;Note=Predicted helix-turn-helix motif with score 1312 (+3.66 SD) at aa 26-47%2C sequence NTFAAAAAAVCRTQSAVSQQMQ;gbkey=misc_feature;gene=hexA
AL590842.1	EMBL	gene	2872404	2872676	.	-	.	ID=gene2533;Name=YPO2557;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2557
AL590842.1	EMBL	CDS	2872404	2872676	.	-	0	ID=cds2491;Parent=gene2533;Dbxref=UniProtKB/TrEMBL:Q74T25,NCBI_GP:CAL21182.1;Name=CAL21182.1;Note=no significant database hits. CDS DNA has a low G+C content%2C 35.16%25.;gbkey=CDS;product=hypothetical protein;protein_id=CAL21182.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2872413	2872436	.	-	.	ID=id6067;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2872809	2874023	.	+	.	ID=gene2534;Name=aat;gbkey=Gene;gene=aat;gene_biotype=protein_coding;locus_tag=YPO2558
AL590842.1	EMBL	CDS	2872809	2874023	.	+	0	ID=cds2492;Parent=gene2534;Dbxref=GOA:Q0WDW9,InterPro:IPR004839,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q0WDW9,NCBI_GP:CAL21183.1;Name=CAL21183.1;Note=Similar to Methylobacillus flagellatum aspartate aminotransferase Aat TR:Q9RAN0 (EMBL:L78665) (429 aa) fasta scores: E(): 0%2C 62.4%25 id in 404 aa%2C and to Escherichia coli probable aminotransferase YfbQ SW:YFBQ_ECOLI (P77727) (405 aa) fasta scores: E(): 0%2C 89.6%25 id in 404 aa;gbkey=CDS;gene=aat;inference=similar to sequence:INSDC:L78665;product=probable aminotransferase;protein_id=CAL21183.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2872827	2874011	.	+	.	ID=id6068;Note=Pfam match to entry PF00155 aminotran_1%2CAminotransferases class-I%2C score 97.60%2C E-value 2.4e-25;gbkey=misc_feature;gene=aat;inference=protein motif:PF00155
AL590842.1	EMBL	gene	2874174	2874767	.	+	.	ID=gene2535;Name=YPO2559;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2559
AL590842.1	EMBL	CDS	2874174	2874767	.	+	0	ID=cds2493;Parent=gene2535;Dbxref=GOA:Q8ZDK3,InterPro:IPR003607,InterPro:IPR006674,InterPro:IPR022971,NCBI_GP:CAL21184.1;Name=CAL21184.1;Note=Similar to Escherichia coli hypothetical protein B2291 TR:P76491 (EMBL:AE000318) (199 aa) fasta scores: E(): 0%2C 80.4%25 id in 194 aa%2C and to Bacillus megaterium oxetanocin A biosynthetic enzyme OxsA TR:O24769 (EMBL:AB005787) (194 aa) fasta scores: E(): 8.2e-11%2C 26.6%25 id in 188 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE000318;product=conserved hypothetical protein;protein_id=CAL21184.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2874255	2874593	.	+	.	ID=id6069;Note=Pfam match to entry PF01966 HD%2C HD domain%2C score 15.20%2C E-value 0.045;gbkey=misc_feature;inference=protein motif:PF01966
AL590842.1	EMBL	gene	2874814	2875083	.	-	.	ID=gene2536;Name=YPO2560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2560
AL590842.1	EMBL	CDS	2874814	2875083	.	-	0	ID=cds2494;Parent=gene2536;Dbxref=UniProtKB/TrEMBL:Q74T23,NCBI_GP:CAL21185.1;Name=CAL21185.1;Note=No significant database matches;gbkey=CDS;product=putative exported protein;protein_id=CAL21185.1;transl_table=11
AL590842.1	EMBL	gene	2875110	2876945	.	-	.	ID=gene2537;Name=YPO2561;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2561
AL590842.1	EMBL	CDS	2875110	2876942	.	-	0	ID=cds2495;Parent=gene2537;Dbxref=GOA:Q0WDW6,InterPro:IPR001898,InterPro:IPR004680,InterPro:IPR006037,UniProtKB/TrEMBL:Q0WDW6,NCBI_GP:CAL21186.1;Name=CAL21186.1;Note=Similar to Escherichia coli hypothetical protein YfbS SW:YFBS_ECOLI (P77741) (610 aa) fasta scores: E(): 0%2C71.6%25 id in 610 aa%2C and to Pasteurella multocida hypothetical protein PM1999 TR:AAK04083 (EMBL:AE006236) (618 aa) fasta scores: E(): 0%2C 60.4%25 id in 608 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE006236;product=putative ion transport protein;protein_id=CAL21186.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2875119	2875184	.	-	.	ID=id6070;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2875146	2875445	.	-	.	ID=id6071;Note=Pfam match to entry PF00939 Na_sulph_symp%2CSodium:sulfate symporter transmembrane region%2C score 7.60%2CE-value 0.16;gbkey=misc_feature;inference=protein motif:PF00939
AL590842.1	EMBL	sequence_feature	2875221	2875271	.	-	.	ID=id6072;Note=PS01271 Sodium:sulfate symporter family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01271
AL590842.1	EMBL	sequence_feature	2875245	2875310	.	-	.	ID=id6073;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2875371	2875436	.	-	.	ID=id6074;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2875497	2875562	.	-	.	ID=id6075;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2875743	2876018	.	-	.	ID=id6076;Note=Pfam match to entry PF02080 TrkA%2C Potassium channel%2Cscore 63.90%2C E-value 3.4e-15;gbkey=misc_feature;inference=protein motif:PF02080
AL590842.1	EMBL	sequence_feature	2875851	2875874	.	-	.	ID=id6077;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	2876025	2876300	.	-	.	ID=id6078;Note=Pfam match to entry PF02080 TrkA%2C Potassium channel%2Cscore 54.70%2C E-value 2e-12;gbkey=misc_feature;inference=protein motif:PF02080
AL590842.1	EMBL	sequence_feature	2876358	2876423	.	-	.	ID=id6079;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2876460	2876600	.	-	.	ID=id6080;Note=Pfam match to entry PF00939 Na_sulph_symp%2CSodium:sulfate symporter transmembrane region%2C score 8.40%2CE-value 0.095;gbkey=misc_feature;inference=protein motif:PF00939
AL590842.1	EMBL	sequence_feature	2876484	2876549	.	-	.	ID=id6081;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2876589	2876654	.	-	.	ID=id6082;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2876715	2876771	.	-	.	ID=id6083;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2876721	2876867	.	-	.	ID=id6084;Note=Pfam match to entry PF00939 Na_sulph_symp%2CSodium:sulfate symporter transmembrane region%2C score 19.90%2CE-value 5.2e-05;gbkey=misc_feature;inference=protein motif:PF00939
AL590842.1	EMBL	sequence_feature	2876808	2876864	.	-	.	ID=id6085;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2876880	2876945	.	-	.	ID=id6086;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2877234	2877896	.	-	.	ID=gene2538;Name=YPO2562;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2562
AL590842.1	EMBL	CDS	2877234	2877896	.	-	0	ID=cds2496;Parent=gene2538;Dbxref=GOA:Q7CJ95,InterPro:IPR006439,InterPro:IPR023198,InterPro:IPR023214,UniProtKB/TrEMBL:Q7CJ95,NCBI_GP:CAL21187.1;Name=CAL21187.1;Note=Similar to Saccharomyces cerevisiae DL-glycerol-3-phosphatase GPP2 SW:GPP2_YEAST (P40106) (250 aa) fasta scores: E(): 4.7e-15%2C 33.0%25 id in 212 aa%2C and to Escherichia coli hypothetical protein YfbT SW:YFBT_ECOLI (P77625) (222 aa) fasta scores: E(): 0%2C 72.4%25 id in 214 aa;gbkey=CDS;product=putative haloacid dehalogenase-like hydrolase;protein_id=CAL21187.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2877339	2877884	.	-	.	ID=id6087;Note=Pfam match to entry PF00702 Hydrolase%2C haloacid dehalogenase-like hydrolase%2C score 164.10%2C E-value 2.3e-45;gbkey=misc_feature;inference=protein motif:PF00702
AL590842.1	EMBL	gene	2878055	2878549	.	-	.	ID=gene2539;Name=YPO2563;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2563
AL590842.1	EMBL	CDS	2878055	2878549	.	-	0	ID=cds2497;Parent=gene2539;Dbxref=InterPro:IPR005587,InterPro:IPR023145,InterPro:IPR023146,NCBI_GP:CAL21188.1;Name=CAL21188.1;Note=Similar to Escherichia coli hypothetical protein YbfU SW:YFBU_ECOLI (P76492) (164 aa) fasta scores: E(): 0%2C80.5%25 id in 164 aa%2C and to Vibrio cholerae hypothetical protein VC1871 TR:Q9KQX6 (EMBL:AE004263) (170 aa) fasta scores: E(): 0%2C 60.2%25 id in 166 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004263;product=conserved hypothetical protein;protein_id=CAL21188.1;transl_table=11
AL590842.1	EMBL	gene	2878857	2879312	.	-	.	ID=gene2540;Name=YPO2564;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2564
AL590842.1	EMBL	CDS	2878857	2879312	.	-	0	ID=cds2498;Parent=gene2540;Dbxref=GOA:Q8ZDJ8,InterPro:IPR007334,NCBI_GP:CAL21189.1;Name=CAL21189.1;Note=Similar to Escherichia coli hypothetical protein B2295 TR:P77496 (EMBL:AE000318) (151 aa) fasta scores: E(): 0%2C 70.2%25 id in 151 aa%2C and to Vibrio cholerae hypothetical protein VC1099 TR:Q9KT06 (EMBL:AE004191) (152 aa) fasta scores: E(): 1.7e-24%2C 47.3%25 id in 146 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004191;product=conserved hypothetical protein;protein_id=CAL21189.1;transl_table=11
AL590842.1	EMBL	gene	2879553	2879744	.	+	.	ID=gene2541;Name=YPO2565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2565
AL590842.1	EMBL	CDS	2879553	2879744	.	+	0	ID=cds2499;Parent=gene2541;Dbxref=UniProtKB/TrEMBL:Q74T20,NCBI_GP:CAL21190.1;Name=CAL21190.1;Note=No significant database matches;gbkey=CDS;product=hypothetical protein;protein_id=CAL21190.1;transl_table=11
AL590842.1	EMBL	gene	2879734	2880936	.	+	.	ID=gene2542;Name=ack;gbkey=Gene;gene=ack;gene_biotype=protein_coding;gene_synonym=ackA;locus_tag=YPO2566
AL590842.1	EMBL	CDS	2879734	2880936	.	+	0	ID=cds2500;Parent=gene2542;Dbxref=GOA:Q8ZDJ6,InterPro:IPR000890,InterPro:IPR004372,InterPro:IPR023865,NCBI_GP:CAL21191.1;Name=CAL21191.1;Note=Similar to Escherichia coli acetate kinase AckA SW:ACKA_ECOLI (P15046) (400 aa) fasta scores: E(): 0%2C 88.5%25 id in 400 aa%2C and to Vibrio cholerae probable acetate kinase VC1098 TR:Q9KT07 (EMBL:AE004190) (398 aa) fasta scores: E(): 0%2C 70.9%25 id in 398 aa;gbkey=CDS;gene=ack;inference=similar to sequence:INSDC:AE004190;product=acetate kinase;protein_id=CAL21191.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2879746	2880912	.	+	.	ID=id6088;Note=Pfam match to entry PF00871 Acetate_kinase%2CAcetokinase family%2C score 830.00%2C E-value 8.2e-246;gbkey=misc_feature;gene=ack;inference=protein motif:PF00871
AL590842.1	EMBL	sequence_feature	2879749	2879784	.	+	.	ID=id6089;Note=PS01075 Acetate and butyrate kinases family signature 1.;gbkey=misc_feature;gene=ack;inference=protein motif:ProSite:PS01075
AL590842.1	EMBL	sequence_feature	2880349	2880402	.	+	.	ID=id6090;Note=PS01076 Acetate and butyrate kinases family signature 2.;gbkey=misc_feature;gene=ack;inference=protein motif:ProSite:PS01076
AL590842.1	EMBL	gene	2881104	2883257	.	+	.	ID=gene2543;Name=pta;gbkey=Gene;gene=pta;gene_biotype=protein_coding;locus_tag=YPO2567
AL590842.1	EMBL	CDS	2881104	2883257	.	+	0	ID=cds2501;Parent=gene2543;Dbxref=GOA:Q7CJ96,InterPro:IPR002505,InterPro:IPR004614,InterPro:IPR010766,InterPro:IPR016475,InterPro:IPR027417,InterPro:IPR028979,NCBI_GP:CAL21192.1;Name=CAL21192.1;Note=Similar to Escherichia coli phosphate acetyltransferase Pta SW:PTA_ECOLI (P39184) (713 aa) fasta scores: E(): 0%2C 87.2%25 id in 711 aa%2C and to Vibrio cholerae probable phosphate acetyltransferase VC1097 TR:Q9KT08 (EMBL:AE004190) (714 aa) fasta scores: E(): 0%2C 75.9%25 id in 711 aa;gbkey=CDS;gene=pta;inference=similar to sequence:INSDC:AE004190;product=phosphate acetyltransferase;protein_id=CAL21192.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2882271	2883221	.	+	.	ID=id6091;Note=Pfam match to entry PF01515 PTA_PTB%2C Phosphate acetyl/butaryl transferase%2C score 638.20%2C E-value 4.4e-188;gbkey=misc_feature;gene=pta;inference=protein motif:PF01515
AL590842.1	EMBL	gene	2883523	2884557	.	-	.	ID=gene2544;Name=YPO2568;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2568
AL590842.1	EMBL	CDS	2883523	2884557	.	-	0	ID=cds2502;Parent=gene2544;Dbxref=GOA:Q0WDV9,InterPro:IPR000843,InterPro:IPR010982,InterPro:IPR028082,UniProtKB/TrEMBL:Q0WDV9,NCBI_GP:CAL21193.1;Name=CAL21193.1;Note=Similar to Escherichia coli gluconate utilization system Gnt-I transcriptional repressor GntR SW:GNTR_ECOLI (P46860) (331 aa) fasta scores: E(): 3.3e-29%2C 33.0%25 id in 306 aa%2C and to Escherichia coli L-idonate regulatory protein IdnR SW:IDNR_ECOLI (P39343) (332 aa) fasta scores: E(): 1.7e-28%2C 29.4%25 id in 323 aa;gbkey=CDS;product=LacI-family transcriptional regulatory protein;protein_id=CAL21193.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2883628	2884353	.	-	.	ID=id6092;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 38.60%2C E-value 2.1e-08;gbkey=misc_feature;inference=protein motif:PF00532
AL590842.1	EMBL	sequence_feature	2884444	2884527	.	-	.	ID=id6093;Note=Pfam match to entry PF00356 lacI%2C Bacterial regulatory proteins%2C lacI family%2C score 33.10%2C E-value 7.9e-08;gbkey=misc_feature;inference=protein motif:PF00356
AL590842.1	EMBL	sequence_feature	2884456	2884521	.	-	.	ID=id6094;Note=Predicted helix-turn-helix motif with score 1905 (+5.68 SD) at aa 47-68%2C sequence VTLQEVADYAGVGSMTVSRALR;gbkey=misc_feature
AL590842.1	EMBL	sequence_feature	2884459	2884515	.	-	.	ID=id6095;Note=PS00356 Bacterial regulatory proteins%2C lacI family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00356
AL590842.1	EMBL	gene	2884924	2885367	.	+	.	ID=gene2545;Name=YPO2569;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2569
AL590842.1	EMBL	CDS	2884924	2885367	.	+	0	ID=cds2503;Parent=gene2545;Dbxref=GOA:Q7CJ97,InterPro:IPR002178,InterPro:IPR016152,PDB:3OXP,UniProtKB/TrEMBL:Q7CJ97,NCBI_GP:CAL21194.1;Name=CAL21194.1;Note=Similar to Escherichia coli phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS)%2C mannitol permease IIa protein%2C CmtB SW:PTYA_ECOLI (P32058) (147 aa) fasta scores: E(): 9.8e-18%2C42.3%25 id in 137 aa%2C and to Vibrio cholerae PTS system%2C IIa component VCA0245 TR:Q9KMS5 (EMBL:AE004364) (168 aa) fasta scores: E(): 1.5e-16%2C 37.4%25 id in 147 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004364;product=phosphotransferase enzyme II%2C A component;protein_id=CAL21194.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2884990	2885181	.	+	.	ID=id6096;Note=Pfam match to entry PF00359 PTS_EIIA_2%2Cphosphoenolpyruvate-dependent sugar phosphotransferase system%2C EIIA 2%2C score 66.20%2C E-value 3.6e-17;gbkey=misc_feature;inference=protein motif:PF00359
AL590842.1	EMBL	pseudogene	2885536	2885775	.	+	.	ID=gene2546;Name=YPO2570;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO2570;pseudo=true
AL590842.1	EMBL	CDS	2885536	2885775	.	+	0	ID=cds2504;Parent=gene2546;Note=Similar to Escherichia coli unknown pentitol phosphotransferase enzyme II%2C B component SgaB SW:PTXB_ECOLI (P39302) (101 aa) fasta scores: E(): 0.014%2C29.1%25 id in 79 aa%2C and to Bacillus halodurans hypothetical protein BH0222 TR:Q9KG90 (EMBL:AP001507) (89 aa) fasta scores: E(): 2.3e-08%2C 40.3%25 id in 77 aa. This CDS is disrupted by the insertion of IS285 element. The insertion occurred near the C-terminus. It is not clear whether this insertion affects the function of the protein.;gbkey=CDS;inference=similar to sequence:INSDC:AP001507;product=phosphotransferase enzyme II%2C B component (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	repeat_region	2885777	2887091	.	-	.	ID=id6097;Note=insertion sequence:IS285;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	2885777	2885805	.	+	.	ID=id6098;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	2885812	2887020	.	-	.	ID=gene2547;Name=y1062;gbkey=Gene;gene=y1062;gene_biotype=protein_coding;gene_synonym=ypmt1.80C;locus_tag=YPO2571
AL590842.1	EMBL	CDS	2885812	2887020	.	-	0	ID=cds2505;Parent=gene2547;Dbxref=GOA:O68779,InterPro:IPR001207,UniProtKB/TrEMBL:O68779,NCBI_GP:CAL21196.1;Name=CAL21196.1;Note=Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa.;gbkey=CDS;gene=y1062;inference=similar to sequence:INSDC:AF053947;product=transposase for the IS285 insertion element;protein_id=CAL21196.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2885884	2887020	.	-	.	ID=id6099;Note=Pfam match to entry PF00872 Transpo_mutator%2CTransposase%2C Mutator family%2C score 430.40%2C E-value 1.6e-125;gbkey=misc_feature;gene=y1062;inference=protein motif:PF00872
AL590842.1	EMBL	sequence_feature	2886253	2886327	.	-	.	ID=id6100;Note=PS01007 Transposases%2C Mutator family%2C signature.;gbkey=misc_feature;gene=y1062;inference=protein motif:ProSite:PS01007
AL590842.1	EMBL	INVERTED	2887063	2887091	.	-	.	ID=id6101;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	pseudogene	2887093	2887932	.	-	.	ID=gene2548;Name=pbpC;gbkey=Gene;gene=pbpC;gene_biotype=pseudogene;locus_tag=YPO2572;pseudo=true
AL590842.1	EMBL	CDS	2887093	2887932	.	-	0	ID=cds2506;Parent=gene2548;Note=Similar to Escherichia coli bifunctional penicillin-binding protein 1C%2C PbpC SW:PBPC_ECOLI (P76577) (770 aa) fasta scores: E(): 5.8e-25%2C 35.4%25 id in 285 aa%2Cand to Xylella fastidiosa bifunctional penicillin binding protein 1C%2C XF2235 TR:Q9PBA9 (EMBL:AE004036) (796 aa) fasta scores: E(): 1.1e-24%2C 39.9%25 id in 263 aa. The CDS is truncated%2C at codon 280%2C by the insertion of the downstream IS285 element.;gbkey=CDS;gene=pbpC;inference=similar to sequence:INSDC:AE004036;product=bifunctional penicillin-binding protein 1C (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	2887291	2887797	.	-	.	ID=id6102;Note=Pfam match to entry PF00912 Transglycosyl%2CTransglycosylase%2C score 150.20%2C E-value 3.7e-41;gbkey=misc_feature;gene=pbpC;inference=protein motif:PF00912
AL590842.1	EMBL	gene	2887989	2894003	.	-	.	ID=gene2549;Name=YPO2573;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2573
AL590842.1	EMBL	CDS	2887989	2894003	.	-	0	ID=cds2507;Parent=gene2549;Dbxref=GOA:Q8ZDJ2,InterPro:IPR001599,InterPro:IPR002890,InterPro:IPR008930,InterPro:IPR011625,InterPro:IPR021868,NCBI_GP:CAL21198.1;Name=CAL21198.1;Note=No significant database matches to the full length CDS. Some similarity to the internal regions of Rickettsia prowazekii hypothetical protein RP558 TR:Q9ZCZ3 (EMBL:AJ235272) (1077 aa) fasta scores: E(): 0%2C 28.2%25 id in 1027 aa%2C and to Xylella fastidiosa hypothetical protein XF1252 TR:Q9PDX7 (EMBL:AE003959) (1641 aa) fasta scores: E(): 0%2C 22.7%25 id in 1680 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ235272;product=putative membrane protein;protein_id=CAL21198.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2893683	2893748	.	-	.	ID=id6103;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2893893	2893958	.	-	.	ID=id6104;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2894374	2894928	.	-	.	ID=gene2550;Name=YPO2574;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2574
AL590842.1	EMBL	CDS	2894374	2894928	.	-	0	ID=cds2508;Parent=gene2550;Dbxref=InterPro:IPR009898,UniProtKB/TrEMBL:Q0WDV5,NCBI_GP:CAL21199.1;Name=CAL21199.1;Note=No significant database matches to the full length CDS;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL21199.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2894404	2894469	.	-	.	ID=id6105;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2894545	2894610	.	-	.	ID=id6106;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2894632	2894697	.	-	.	ID=id6107;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2894851	2894907	.	-	.	ID=id6108;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2895617	2896471	.	-	.	ID=gene2551;Name=YPO2576;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2576
AL590842.1	EMBL	CDS	2895617	2896471	.	-	0	ID=cds2509;Parent=gene2551;Dbxref=GOA:Q7CJW7,InterPro:IPR000281,InterPro:IPR001347,InterPro:IPR009057,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CJW7,NCBI_GP:CAL21200.1;Name=CAL21200.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA5506 TR:AAG08891 (EMBL:AE004963) (285 aa) fasta scores: E(): 2.9e-10%2C 25.8%25 id in 283 aa%2C and to Bacillus halodurans hypothetical protein BH2940 TR:Q9K8R3 (EMBL:AP001517) (284 aa) fasta scores: E(): 7.1e-13%2C 24.4%25 id in 270 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001517;product=conserved hypothetical protein;protein_id=CAL21200.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2895659	2896060	.	-	.	ID=id6109;Note=Pfam match to entry PF01380 SIS%2C SIS domain%2C score 8.80%2C E-value 0.018;gbkey=misc_feature;inference=protein motif:PF01380
AL590842.1	EMBL	gene	2896777	2898303	.	+	.	ID=gene2552;Name=YPO2577;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2577
AL590842.1	EMBL	CDS	2896777	2898303	.	+	0	ID=cds2510;Parent=gene2552;Dbxref=GOA:Q7CJW6,InterPro:IPR010061,InterPro:IPR015590,InterPro:IPR016160,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,UniProtKB/TrEMBL:Q7CJW6,NCBI_GP:CAL21201.1;Name=CAL21201.1;Note=Similar to Streptomyces coelicolor methylmalonic acid semialdehyde dehydrogenase MsdA TR:Q53935 (EMBL:L48550) (500 aa) fasta scores: E(): 0%2C 55.3%25 id in 503 aa%2C and to Pseudomonas aeruginosa probable aldehyde dehydrogenase PA0130 TR:AAG03520 (EMBL:AE004451) (497 aa) fasta scores: E(): 0%2C 59.4%25 id in 507 aa;gbkey=CDS;inference=similar to sequence:INSDC:L48550;product=putative aldehyde dehydrogenase;protein_id=CAL21201.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2896828	2898249	.	+	.	ID=id6110;Note=Pfam match to entry PF00171 aldedh%2C Aldehyde dehydrogenase family%2C score 539.90%2C E-value 1.7e-158;gbkey=misc_feature;inference=protein motif:PF00171
AL590842.1	EMBL	sequence_feature	2897617	2897652	.	+	.	ID=id6111;Note=PS00070 Aldehyde dehydrogenases cysteine active site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00070
AL590842.1	EMBL	gene	2898317	2900263	.	+	.	ID=gene2553;Name=YPO2578;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2578
AL590842.1	EMBL	CDS	2898317	2900263	.	+	0	ID=cds2511;Parent=gene2553;Dbxref=GOA:Q0WDV2,InterPro:IPR000399,InterPro:IPR011766,InterPro:IPR012000,InterPro:IPR012001,InterPro:IPR029035,InterPro:IPR029061,UniProtKB/TrEMBL:Q0WDV2,NCBI_GP:CAL21202.1;Name=CAL21202.1;Note=Similar to Spirulina platensis acetohydroxy acid synthase IlvX TR:Q59950 (EMBL:M75906) (612 aa) fasta scores: E(): 6.4e-17%2C 28.0%25 id in 615 aa%2C and to Bacillus halodurans possible myo-inositol catabolism protein IolD TR:Q9KAG9 (EMBL:AP001515) (637 aa) fasta scores: E(): 0%2C54.3%25 id in 644 aa;gbkey=CDS;inference=similar to sequence:INSDC:M75906;product=putative thiamine pyrophosphate-dependent protein;protein_id=CAL21202.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2898524	2899288	.	+	.	ID=id6112;Note=Pfam match to entry PF00205 TPP_enzymes%2C Thiamine pyrophosphate enzymes%2C score 223.50%2C E-value 7.2e-69;gbkey=misc_feature;inference=protein motif:PF00205
AL590842.1	EMBL	sequence_feature	2898587	2898655	.	+	.	ID=id6113;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2899499	2900125	.	+	.	ID=id6114;Note=Pfam match to entry PF00205 TPP_enzymes%2C Thiamine pyrophosphate enzymes%2C score 131.00%2C E-value 4.1e-40;gbkey=misc_feature;inference=protein motif:PF00205
AL590842.1	EMBL	sequence_feature	2899754	2899813	.	+	.	ID=id6115;Note=PS00187 Thiamine pyrophosphate enzymes signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00187
AL590842.1	EMBL	pseudogene	2900557	2901542	.	+	.	ID=gene2554;Name=YPO2579;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO2579;pseudo=true
AL590842.1	EMBL	CDS	2900557	2901542	.	+	0	ID=cds2512;Parent=gene2554;Note=Similar to Rhizobium meliloti myo-inositol 2-dehydrogenase IdhA SW:MI2D_RHIME (O68965) (330 aa) fasta scores: E(): 0%2C 45.7%25 id in 324 aa%2C and to Rhizobium fredii myo-inositol dehydrogenase TR:AAG44816 (EMBL:AF274867) (329 aa) fasta scores: E(): 0%2C 46.0%25 id in 324 aa. Contains a frameshift after codon 153. The frameshift occurs within a homopolymeric tract of 7C. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=similar to sequence:INSDC:AF274867;product=putative myo-inositol dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	2900560	2901063	.	+	.	ID=id6116;Note=Pfam match to entry PF01408 GFO_IDH_MocA%2COxidoreductase family%2C score 28.60%2C E-value 1.8e-06;gbkey=misc_feature;inference=protein motif:PF01408
AL590842.1	EMBL	sequence_feature	2901052	2901063	.	+	.	ID=id6117;Note=PS00294 Prenyl group binding site (CAAX box).;gbkey=misc_feature;inference=protein motif:ProSite:PS00294
AL590842.1	EMBL	repeat_region	2901552	2901605	.	+	.	ID=id6118;Note=3 x 18 bp repeats;gbkey=repeat_region
AL590842.1	EMBL	gene	2901668	2902597	.	+	.	ID=gene2555;Name=YPO2581;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2581
AL590842.1	EMBL	CDS	2901668	2902597	.	+	0	ID=cds2513;Parent=gene2555;Dbxref=InterPro:IPR025997,InterPro:IPR028082,UniProtKB/TrEMBL:Q74VY5,NCBI_GP:CAL21204.1;Name=CAL21204.1;Note=Similar to Bacillus subtilis D-ribose-binding protein precursor RbsB SW:RBSB_BACSU (P36949) (305 aa) fasta scores: E(): 2e-24%2C 34.1%25 id in 264 aa%2C and to Escherichia coli D-ribose-binding periplasmic protein precursor Rbsb SW:RBSB_ECOLI (P02925) (296 aa) fasta scores: E(): 1.1e-22%2C 32.3%25 id in 266 aa;gbkey=CDS;product=putative sugar-binding periplasmic protein;protein_id=CAL21204.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2901725	2902474	.	+	.	ID=id6119;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 56.70%2C E-value 5.1e-13;gbkey=misc_feature;inference=protein motif:PF00532
AL590842.1	EMBL	gene	2902646	2904193	.	+	.	ID=gene2556;Name=YPO2582;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2582
AL590842.1	EMBL	CDS	2902646	2904193	.	+	0	ID=cds2514;Parent=gene2556;Dbxref=GOA:Q0WDV0,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WDV0,NCBI_GP:CAL21205.1;Name=CAL21205.1;Note=Similar to Escherichia coli D-allose transport ATP-binding protein AlsA SW:ALSA_ECOLI (P32721) (510 aa) fasta scores: E(): 0%2C 38.7%25 id in 514 aa%2C and to Thermotoga maritima possible ribose ABC transporter%2C ATP-binding protein TM0956 TR:Q9X051 (EMBL:AE001758) (523 aa) fasta scores: E(): 0%2C 42.9%25 id in 503 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE001758;product=sugar transport ATP-binding protein;protein_id=CAL21205.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2902736	2903302	.	+	.	ID=id6120;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 184.60%2C E-value 1.6e-51;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2902757	2902780	.	+	.	ID=id6121;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	2903519	2904100	.	+	.	ID=id6122;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 59.20%2C E-value 9.1e-14;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	gene	2904205	2905233	.	+	.	ID=gene2557;Name=YPO2583;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2583
AL590842.1	EMBL	CDS	2904205	2905233	.	+	0	ID=cds2515;Parent=gene2557;Dbxref=GOA:Q7CJW5,InterPro:IPR001851,UniProtKB/TrEMBL:Q7CJW5,NCBI_GP:CAL21206.1;Name=CAL21206.1;Note=Similar to Escherichia coli ribose transport system permease protein RbsC SW:RBSC_ECOLI (P04984) (321 aa) fasta scores: E(): 0%2C 45.9%25 id in 307 aa%2C and to Vibrio cholerae possible ribose ABC transporter%2C permease protein VCA0129 TR:Q9KN36 (EMBL:AE004354) (332 aa) fasta scores: E(): 0%2C44.6%25 id in 307 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004354;product=sugar transport system permease protein;protein_id=CAL21206.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2904271	2904324	.	+	.	ID=id6123;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2904361	2904429	.	+	.	ID=id6124;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2904439	2904498	.	+	.	ID=id6125;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2904535	2904603	.	+	.	ID=id6126;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2904754	2904822	.	+	.	ID=id6127;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2904904	2904963	.	+	.	ID=id6128;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2904991	2905059	.	+	.	ID=id6129;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2905072	2905131	.	+	.	ID=id6130;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2905144	2905197	.	+	.	ID=id6131;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2905257	2906390	.	+	.	ID=gene2558;Name=YPO2584;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2584
AL590842.1	EMBL	CDS	2905257	2906390	.	+	0	ID=cds2516;Parent=gene2558;Dbxref=GOA:Q0WDU8,InterPro:IPR000683,InterPro:IPR004104,InterPro:IPR016040,UniProtKB/TrEMBL:Q0WDU8,NCBI_GP:CAL21207.1;Name=CAL21207.1;Note=Similar to Streptomyces coelicolor putative oxidoreductase SC8F11.14c TR:Q9KZG4 (EMBL:AL353864) (387 aa) fasta scores: E(): 0%2C 36.6%25 id in 380 aa%2C and to Bacillus halodurans hypothetical protein BH0710 TR:Q9KEY9 (EMBL:AP001509) (388 aa) fasta scores: E(): 7.3e-32%2C 35.6%25 id in 390 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001509;product=conserved hypothetical protein;protein_id=CAL21207.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2905266	2906066	.	+	.	ID=id6132;Note=Pfam match to entry PF01408 GFO_IDH_MocA%2COxidoreductase family%2C score 164.80%2C E-value 1.4e-45;gbkey=misc_feature;inference=protein motif:PF01408
AL590842.1	EMBL	gene	2906422	2908392	.	+	.	ID=gene2559;Name=YPO2585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2585
AL590842.1	EMBL	CDS	2906422	2908392	.	+	0	ID=cds2517;Parent=gene2559;Dbxref=GOA:Q7CJW4,InterPro:IPR002173,InterPro:IPR011611,InterPro:IPR018659,InterPro:IPR029056,UniProtKB/TrEMBL:Q7CJW4,NCBI_GP:CAL21208.1;Name=CAL21208.1;Note=N-terminus similar to Bacillus subtilis inositol utilization protein IolC SW:IOLC_BACSU (P42414) (325 aa) fasta scores: E(): 1.4e-22%2C 31.3%25 id in 336 aa%2C and to Streptomyces coelicolor putative carbohydrate kinase SC8F11.04C TR:Q9KZH4 (EMBL:AL353864) (320 aa) fasta scores: E(): 1.7e-18%2C 36.7%25 id in 332 aa. CDS has an extended C-terminus with no significant database hits;gbkey=CDS;inference=similar to sequence:INSDC:AL353864;product=putative carbohydrate kinase;protein_id=CAL21208.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2906596	2907339	.	+	.	ID=id6133;Note=Pfam match to entry PF00294 pfkB%2C pfkB family carbohydrate kinase%2C score 112.50%2C E-value 7.9e-30;gbkey=misc_feature;inference=protein motif:PF00294
AL590842.1	EMBL	sequence_feature	2907304	2907345	.	+	.	ID=id6134;Note=PS00584 pfkB family of carbohydrate kinases signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00584
AL590842.1	EMBL	gene	2908545	2909465	.	+	.	ID=gene2560;Name=YPO2586;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2586
AL590842.1	EMBL	CDS	2908545	2909465	.	+	0	ID=cds2518;Parent=gene2560;Dbxref=InterPro:IPR013022,UniProtKB/TrEMBL:Q0WDU6,NCBI_GP:CAL21209.1;Name=CAL21209.1;Note=Similar to Rhizobium meliloti rhizopine catabolism protein MocC SW:MOCC_RHIME (P49304) (325 aa) fasta scores: E(): 0%2C 52.7%25 id in 294 aa%2C and to Rhizobium leguminosarum inositol degradative protein MocC TR:O85770 (EMBL:AF076240) (295 aa) fasta scores: E(): 0%2C 53.6%25 id in 293 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF076240;product=conserved hypothetical protein;protein_id=CAL21209.1;transl_table=11
AL590842.1	EMBL	gene	2909475	2910290	.	+	.	ID=gene2561;Name=YPO2587;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2587
AL590842.1	EMBL	CDS	2909475	2910290	.	+	0	ID=cds2519;Parent=gene2561;Dbxref=GOA:Q7CJW3,InterPro:IPR011051,InterPro:IPR014710,InterPro:IPR021120,InterPro:IPR024203,UniProtKB/TrEMBL:Q7CJW3,NCBI_GP:CAL21210.1;Name=CAL21210.1;Note=Similar to Erwinia chrysanthemi 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI SW:KDUI_ERWCH (Q05529) (278 aa) fasta scores: E(): 0.62%2C24.7%25 id in 243 aa%2C and to Bacillus subtilis inositol utilization protein IolB SW:IOLB_BACSU (P42413) (271 aa) fasta scores: E(): 0%2C 48.5%25 id in 268 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21210.1;transl_table=11
AL590842.1	EMBL	gene	2910755	2912650	.	+	.	ID=gene2562;Name=YPO2588;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2588
AL590842.1	EMBL	CDS	2910755	2912650	.	+	0	ID=cds2520;Parent=gene2562;Dbxref=GOA:Q74VZ2,InterPro:IPR001140,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR011527,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q74VZ2,NCBI_GP:CAL21211.1;Name=CAL21211.1;Note=Similar to Rickettsia prowazekii mitochondrial transporter ATM1 protein RP205 TR:Q9ZDW0 (EMBL:AJ235270) (609 aa) fasta scores: E(): 0%2C 53.0%25 id in 585 aa%2C and to the C-terminal regions of eukaryotic Drosophila melanogaster hypothetical protein CG7955 TR:Q9W0C5 (EMBL:AE003472) (606 aa) fasta scores: E(): 0%2C 46.1%25 id in 597 aa. Similar to the C-terminal region of Homo sapiens ABC transporter ABCB6 TR:Q9NP58 (EMBL:AJ289233) (842 aa) fasta scores: E(): 0%2C 44.9%25 id in 599 aa. All the database matches%2C bar one%2C are to eukaryotic proteins.;gbkey=CDS;inference=similar to sequence:INSDC:AJ289233;product=putative ABC transport protein;protein_id=CAL21211.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2910929	2910997	.	+	.	ID=id6135;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2910935	2911759	.	+	.	ID=id6136;Note=Pfam match to entry PF00664 ABC_membrane%2C ABC transporter transmembrane region.%2C score 126.40%2C E-value 5.1e-34;gbkey=misc_feature;inference=protein motif:PF00664
AL590842.1	EMBL	sequence_feature	2911040	2911099	.	+	.	ID=id6137;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2911277	2911345	.	+	.	ID=id6138;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2911361	2911429	.	+	.	ID=id6139;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2911607	2911675	.	+	.	ID=id6140;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2911973	2912527	.	+	.	ID=id6141;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 214.50%2C E-value 1.5e-60;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2911994	2912017	.	+	.	ID=id6142;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	2912306	2912350	.	+	.	ID=id6143;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	2912666	2912953	.	-	.	ID=gene2563;Name=YPO2589;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2589
AL590842.1	EMBL	CDS	2912666	2912953	.	-	0	ID=cds2521;Parent=gene2563;Dbxref=InterPro:IPR007138,InterPro:IPR011008,UniProtKB/TrEMBL:Q7CJW2,NCBI_GP:CAL21212.1;Name=CAL21212.1;Note=Similar to Neisseria meningitidis hypothetical protein NMA1764 TR:Q9JTI2 (EMBL:AL162757) (97 aa) fasta scores: E(): 1.8e-08%2C 33.3%25 id in 90 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL162757;product=conserved hypothetical protein;protein_id=CAL21212.1;transl_table=11
AL590842.1	EMBL	gene	2913396	2913590	.	+	.	ID=gene2564;Name=YPO2590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2590
AL590842.1	EMBL	CDS	2913396	2913590	.	+	0	ID=cds2522;Parent=gene2564;Dbxref=GOA:Q7CJW1,InterPro:IPR009052,InterPro:IPR011326,InterPro:IPR015065,UniProtKB/TrEMBL:Q7CJW1,NCBI_GP:CAL21213.1;Name=CAL21213.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21213.1;transl_table=11
AL590842.1	EMBL	gene	2913608	2913790	.	-	.	ID=gene2565;Name=YPO2591;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2591
AL590842.1	EMBL	CDS	2913608	2913790	.	-	0	ID=cds2523;Parent=gene2565;Dbxref=UniProtKB/TrEMBL:Q7CJW0,NCBI_GP:CAL21214.1;Name=CAL21214.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21214.1;transl_table=11
AL590842.1	EMBL	gene	2913972	2914937	.	-	.	ID=gene2566;Name=YPO2592;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2592
AL590842.1	EMBL	CDS	2913972	2914937	.	-	0	ID=cds2524;Parent=gene2566;Dbxref=UniProtKB/TrEMBL:Q7CJV9,NCBI_GP:CAL21215.1;Name=CAL21215.1;Note=Similar to Streptococcus pneumoniae transmembrane protein CAP33FM TR:O86896 (EMBL:AJ006986) (332 aa) fasta scores: E(): 9.7e-14%2C 25.4%25 id in 335 aa%2C and to internal region of Campylobacter jejuni probable enterochelin uptake permease CeuC TR:Q9PMU6 (EMBL:AL139078) (312 aa) fasta scores: E(): 0.13%2C 23.3%25 id in 296 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL139078;product=putative membrane protein;protein_id=CAL21215.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2914005	2914070	.	-	.	ID=id6144;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2914101	2914166	.	-	.	ID=id6145;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2914206	2914262	.	-	.	ID=id6146;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2914308	2914361	.	-	.	ID=id6147;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2914401	2914451	.	-	.	ID=id6148;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2914497	2914547	.	-	.	ID=id6149;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2914569	2914634	.	-	.	ID=id6150;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2914665	2914715	.	-	.	ID=id6151;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2914755	2914820	.	-	.	ID=id6152;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2915360	2915977	.	+	.	ID=gene2567;Name=YPO2593;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2593
AL590842.1	EMBL	CDS	2915360	2915977	.	+	0	ID=cds2525;Parent=gene2567;Dbxref=GOA:Q7CJV8,InterPro:IPR000792,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:Q7CJV8,NCBI_GP:CAL21216.1;Name=CAL21216.1;Note=Similar to Salmonella typhimurium fimbriae W protein FimW SW:FIMW_SALTY (P37928) (198 aa) fasta scores: E(): 0.0066%2C 21.9%25 id in 178 aa%2C and to C-terminus of Erwinia amylovora activator of exopolysaccharide synthesis%2C RcsB TR:P96320 (EMBL:Y09848) (215 aa) fasta scores: E(): 0.0003%2C43.7%25 id in 71 aa;gbkey=CDS;inference=similar to sequence:INSDC:Y09848;product=putative LuxR-family regulatory proteins;protein_id=CAL21216.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2915792	2915968	.	+	.	ID=id6153;Note=Pfam match to entry PF00196 GerE%2C Bacterial regulatory proteins%2C luxR family%2C score 21.90%2C E-value 0.00026;gbkey=misc_feature;inference=protein motif:PF00196
AL590842.1	EMBL	sequence_feature	2915846	2915911	.	+	.	ID=id6154;Note=Predicted helix-turn-helix motif with score 1182 (+3.21 SD) at aa 163-184%2C sequence FSGGDIARILKKSEKTVSGQKR;gbkey=misc_feature
AL590842.1	EMBL	gene	2916297	2916668	.	-	.	ID=gene2568;Name=YPO2594;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2594
AL590842.1	EMBL	CDS	2916297	2916668	.	-	0	ID=cds2526;Parent=gene2568;Dbxref=UniProtKB/TrEMBL:Q0WDT8,NCBI_GP:CAL21217.1;Name=CAL21217.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21217.1;transl_table=11
AL590842.1	EMBL	gene	2917054	2917263	.	+	.	ID=gene2569;Name=cspE;gbkey=Gene;gene=cspE;gene_biotype=protein_coding;locus_tag=YPO2595
AL590842.1	EMBL	CDS	2917054	2917263	.	+	0	ID=cds2527;Parent=gene2569;Dbxref=GOA:Q0WDT7,InterPro:IPR002059,InterPro:IPR011129,InterPro:IPR012156,InterPro:IPR012340,InterPro:IPR019844,UniProtKB/TrEMBL:Q0WDT7,NCBI_GP:CAL21218.1;Name=CAL21218.1;Note=Similar to Escherichia coli probable cold shock protein CspE SW:CSPE_ECOLI (P36997) (68 aa) fasta scores: E(): 1e-25%2C 94.1%25 id in 68 aa%2C and to Vibrio cholerae hypothetical protein TR:AAC72388 (EMBL:AF098260) (69 aa) fasta scores: E(): 3.1e-26%2C 94.2%25 id in 69 aa. Similar to YPO1746 (84.1%25 identity in 69 aa overlap)%2C YPO1655 (83.3%25 identity in 66 aa overlap)%2C YPO3644 (73.6%25 identity in 72 aa overlap)%2C YPO3643 (72.2%25 identity in 72 aa overlap)%2CYPO2659 (63.9%25 identity in 72 aa overlap) and YPO1398 (53.6%25 identity in 69 aa overlap).;gbkey=CDS;gene=cspE;inference=similar to sequence:INSDC:AF098260;product=putative cold shock protein;protein_id=CAL21218.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2917060	2917260	.	+	.	ID=id6155;Note=Pfam match to entry PF00313 CSD%2C 'Cold-shock' DNA-binding domain%2C score 152.30%2C E-value 8.6e-42;gbkey=misc_feature;gene=cspE;inference=protein motif:PF00313
AL590842.1	EMBL	sequence_feature	2917102	2917161	.	+	.	ID=id6156;Note=PS00352 'Cold-shock' DNA-binding domain signature.;gbkey=misc_feature;gene=cspE;inference=protein motif:ProSite:PS00352
AL590842.1	EMBL	gene	2917686	2918069	.	-	.	ID=gene2570;Name=crcB;gbkey=Gene;gene=crcB;gene_biotype=protein_coding;locus_tag=YPO2596
AL590842.1	EMBL	CDS	2917686	2918069	.	-	0	ID=cds2528;Parent=gene2570;Dbxref=GOA:Q8ZDH2,InterPro:IPR003691,NCBI_GP:CAL21219.1;Name=CAL21219.1;Note=Similar to Escherichia coli hypothetical protein CrcB SW:CRCB_ECOLI (P37002) (127 aa) fasta scores: E(): 8.1e-30%2C 65.0%25 id in 120 aa%2C and to Pseudomonas aeruginosa conserved hypothetical protein PA4383 TR:AAG07771 (EMBL:AE004854) (127 aa) fasta scores: E(): 5.4e-24%2C 53.3%25 id in 122 aa;gbkey=CDS;gene=crcB;inference=similar to sequence:INSDC:AE004854;product=putative membrane protein;protein_id=CAL21219.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2917707	2917772	.	-	.	ID=id6157;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=crcB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2917803	2917868	.	-	.	ID=id6158;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=crcB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2917905	2917970	.	-	.	ID=id6159;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=crcB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2918001	2918054	.	-	.	ID=id6160;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=crcB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2918636	2918893	.	+	.	ID=gene2571;Name=tatE;gbkey=Gene;gene=tatE;gene_biotype=protein_coding;locus_tag=YPO2597
AL590842.1	EMBL	CDS	2918636	2918893	.	+	0	ID=cds2529;Parent=gene2571;Dbxref=GOA:Q8ZDH1,InterPro:IPR003369,InterPro:IPR006312,InterPro:IPR024905,NCBI_GP:CAL21220.1;Name=CAL21220.1;Note=Similar to Escherichia coli sec-independent%2Ctwin-arginine translocation (Tat) protein%2C TatE SW:TATE_ECOLI (P25895) (67 aa) fasta scores: E(): 1.4e-09%2C62.9%25 id in 62 aa%2C and to Escherichia coli sec-independent%2Ctwin-arginine translocation (Tat) protein%2C TatA SW:TATA_ECOLI (O65938) (89 aa) fasta scores: E(): 5.4e-09%2C40.5%25 id in 84 aa;gbkey=CDS;gene=tatE;product=sec-independent protein translocase protein;protein_id=CAL21220.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2918645	2918875	.	+	.	ID=id6161;Note=Pfam match to entry PF02416 MttA_Hcf106%2C %2C score 40.30%2C E-value 4.3e-08;gbkey=misc_feature;gene=tatE;inference=protein motif:PF02416
AL590842.1	EMBL	gene	2919074	2920039	.	-	.	ID=gene2572;Name=lip;gbkey=Gene;gene=lip;gene_biotype=protein_coding;gene_synonym=lipA;locus_tag=YPO2598
AL590842.1	EMBL	CDS	2919074	2920039	.	-	0	ID=cds2530;Parent=gene2572;Dbxref=GOA:Q8ZDH0,InterPro:IPR003698,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR013785,NCBI_GP:CAL21221.1;Name=CAL21221.1;Note=Similar to Escherichia coli lipoic acid synthetase LipA SW:LIPA_ECOLI (P25845) (321 aa) fasta scores: E(): 0%2C92.2%25 id in 321 aa%2C and to Vibrio cholerae lipoic acid synthetase VC0943 TR:Q9KTF9 (EMBL:AE004177) (321 aa) fasta scores: E(): 0%2C 81.6%25 id in 321 aa;gbkey=CDS;gene=lip;inference=similar to sequence:INSDC:AE004177;product=lipoic acid synthetase;protein_id=CAL21221.1;transl_table=11
AL590842.1	EMBL	gene	2920232	2920933	.	-	.	ID=gene2573;Name=lipB;gbkey=Gene;gene=lipB;gene_biotype=protein_coding;locus_tag=YPO2599
AL590842.1	EMBL	CDS	2920232	2920933	.	-	0	ID=cds2531;Parent=gene2573;Dbxref=GOA:Q8ZDG9,InterPro:IPR000544,InterPro:IPR004143,InterPro:IPR020605,NCBI_GP:CAL21222.1;Name=CAL21222.1;Note=Similar to Escherichia coli lipoate-protein ligase B LipB SW:LIPB_ECOLI (P30976) (191 aa) fasta scores: E(): 0%2C68.5%25 id in 184 aa%2C and to Vibrio cholerae lipoate-protein ligase B TR:Q9KTF8 (EMBL:AE004177) (219 aa) fasta scores: E(): 0%2C 66.8%25 id in 205 aa;gbkey=CDS;gene=lipB;inference=similar to sequence:INSDC:AE004177;product=lipoate-protein ligase B;protein_id=CAL21222.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2920412	2920840	.	-	.	ID=id6162;Note=Pfam match to entry PF02111 Lipoate_B%2CLipoate-protein ligase B%2C score 255.10%2C E-value 5.8e-101;gbkey=misc_feature;gene=lipB;inference=protein motif:PF02111
AL590842.1	EMBL	sequence_feature	2920664	2920711	.	-	.	ID=id6163;Note=PS01313 Lipoate-protein ligase B signature.;gbkey=misc_feature;gene=lipB;inference=protein motif:ProSite:PS01313
AL590842.1	EMBL	gene	2921145	2921408	.	-	.	ID=gene2574;Name=YPO2600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2600
AL590842.1	EMBL	CDS	2921145	2921408	.	-	0	ID=cds2532;Parent=gene2574;Dbxref=InterPro:IPR007454,InterPro:IPR027471,NCBI_GP:CAL21223.1;Name=CAL21223.1;Note=Similar to Escherichia coli hypothetical protein YbeD SW:YBED_ECOLI (P30977) (87 aa) fasta scores: E(): 7.4e-28%2C 83.9%25 id in 87 aa%2C and to Vibrio cholerae hypothetical protein VC0945 TR:Q9KTF7 (EMBL:AE004177) (92 aa) fasta scores: E(): 2e-23%2C 70.2%25 id in 84 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004177;product=conserved hypothetical protein;protein_id=CAL21223.1;transl_table=11
AL590842.1	EMBL	gene	2921606	2922808	.	-	.	ID=gene2575;Name=dacA;gbkey=Gene;gene=dacA;gene_biotype=protein_coding;locus_tag=YPO2601
AL590842.1	EMBL	CDS	2921606	2922808	.	-	0	ID=cds2533;Parent=gene2575;Dbxref=GOA:Q7CJV7,InterPro:IPR001967,InterPro:IPR012338,InterPro:IPR012907,InterPro:IPR015956,InterPro:IPR018044,UniProtKB/TrEMBL:Q7CJV7,NCBI_GP:CAL21224.1;Name=CAL21224.1;Note=Similar to Escherichia coli penicillin-binding protein 5 DacA SW:DACA_ECOLI (P04287) (403 aa) fasta scores: E(): 0%2C 80.6%25 id in 403 aa%2C and to Escherichia coli penicillin-binding protein 6 DacC SW:DACC_ECOLI (P08506) (400 aa) fasta scores: E(): 0%2C 63.2%25 id in 394 aa. Similar to YPO1320 (72.3%25 identity in 365 aa overlap);gbkey=CDS;gene=dacA;product=putative penicillin-binding protein 5;protein_id=CAL21224.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2921936	2922709	.	-	.	ID=id6164;Note=Pfam match to entry PF00768 Peptidase_S11%2CD-alanyl-D-alanine carboxypeptidase%2C score 498.20%2C E-value 6.4e-146;gbkey=misc_feature;gene=dacA;inference=protein motif:PF00768
AL590842.1	EMBL	gene	2923211	2924293	.	-	.	ID=gene2576;Name=rlpA;gbkey=Gene;gene=rlpA;gene_biotype=protein_coding;locus_tag=YPO2602
AL590842.1	EMBL	CDS	2923211	2924293	.	-	0	ID=cds2534;Parent=gene2576;Dbxref=GOA:Q8ZDG6,InterPro:IPR007730,InterPro:IPR009009,InterPro:IPR012997,NCBI_GP:CAL21225.1;Name=CAL21225.1;Note=Similar to Escherichia coli rare lipoprotein A precursor RlpA SW:RLPA_ECOLI (P10100) (362 aa) fasta scores: E(): 0%2C 54.6%25 id in 368 aa%2C and to Xylella fastidiosa rare lipoprotein A XF2185 TR:Q9PBF9 (EMBL:AE004032) (415 aa) fasta scores: E(): 3e-14%2C 28.8%25 id in 320 aa;gbkey=CDS;gene=rlpA;inference=similar to sequence:INSDC:AE004032;product=rare lipoprotein A precursor;protein_id=CAL21225.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2924240	2924272	.	-	.	ID=id6165;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=rlpA;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	2924303	2925415	.	-	.	ID=gene2577;Name=mrdB;gbkey=Gene;gene=mrdB;gene_biotype=protein_coding;gene_synonym=rodA;locus_tag=YPO2603
AL590842.1	EMBL	CDS	2924303	2925415	.	-	0	ID=cds2535;Parent=gene2577;Dbxref=GOA:Q7CJV6,InterPro:IPR001182,InterPro:IPR011923,InterPro:IPR018365,UniProtKB/TrEMBL:Q7CJV6,NCBI_GP:CAL21226.1;Name=CAL21226.1;Note=Similar to Escherichia coli rod shape-determining protein RodA SW:RODA_ECOLI (P15035) (370 aa) fasta scores: E(): 0%2C 85.9%25 id in 370 aa%2C and to Vibrio cholerae rod shape-determining protein RodA TR:Q9KTF3 (EMBL:AE004177) (373 aa) fasta scores: E(): 0%2C 67.7%25 id in 365 aa;gbkey=CDS;gene=mrdB;inference=similar to sequence:INSDC:AE004177;product=rod shape-determining protein;protein_id=CAL21226.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2924321	2925364	.	-	.	ID=id6166;Note=Pfam match to entry PF01098 FTSW_RODA_SPOVE%2C Cell cycle protein%2C score 578.80%2C E-value 3.3e-170;gbkey=misc_feature;gene=mrdB;inference=protein motif:PF01098
AL590842.1	EMBL	sequence_feature	2924336	2924401	.	-	.	ID=id6167;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=mrdB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2924381	2924455	.	-	.	ID=id6168;Note=PS00428 Cell cycle proteins ftsW / rodA / spoVE signature.;gbkey=misc_feature;gene=mrdB;inference=protein motif:ProSite:PS00428
AL590842.1	EMBL	sequence_feature	2924432	2924497	.	-	.	ID=id6169;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=mrdB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2924534	2924599	.	-	.	ID=id6170;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=mrdB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2924798	2924863	.	-	.	ID=id6171;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=mrdB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2924885	2924935	.	-	.	ID=id6172;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=mrdB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2924951	2925007	.	-	.	ID=id6173;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=mrdB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2925119	2925184	.	-	.	ID=id6174;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=mrdB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2925215	2925265	.	-	.	ID=id6175;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=mrdB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2925305	2925370	.	-	.	ID=id6176;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=mrdB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2925600	2927495	.	-	.	ID=gene2578;Name=mrdA;gbkey=Gene;gene=mrdA;gene_biotype=protein_coding;gene_synonym=pbpA;locus_tag=YPO2604
AL590842.1	EMBL	CDS	2925600	2927495	.	-	0	ID=cds2536;Parent=gene2578;Dbxref=GOA:Q7CJV5,InterPro:IPR001460,InterPro:IPR005311,InterPro:IPR012338,InterPro:IPR017790,UniProtKB/TrEMBL:Q7CJV5,NCBI_GP:CAL21227.1;Name=CAL21227.1;Note=Similar to Escherichia coli penicillin-binding protein 2 PbpA SW:PBP2_ECOLI (P08150) (633 aa) fasta scores: E(): 0%2C 81.1%25 id in 624 aa%2C and to Vibrio cholerae penicillin-binding protein 2 VC0950 TR:Q9KTF2 (EMBL:AE004177) (638 aa) fasta scores: E(): 0%2C 56.7%25 id in 630 aa;gbkey=CDS;gene=mrdA;inference=similar to sequence:INSDC:AE004177;product=penicillin-binding protein 2;protein_id=CAL21227.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2925684	2926727	.	-	.	ID=id6177;Note=Pfam match to entry PF00905 Transpeptidase%2CPenicillin binding protein transpeptidase domain%2C score 389.50%2C E-value 3.3e-113;gbkey=misc_feature;gene=mrdA;inference=protein motif:PF00905
AL590842.1	EMBL	sequence_feature	2927367	2927432	.	-	.	ID=id6178;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=mrdA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2927577	2928047	.	-	.	ID=gene2579;Name=YPO2605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2605
AL590842.1	EMBL	CDS	2927577	2928047	.	-	0	ID=cds2537;Parent=gene2579;Dbxref=GOA:Q8ZDG3,InterPro:IPR003742,InterPro:IPR016051,InterPro:IPR029026,InterPro:IPR029028,NCBI_GP:CAL21228.1;Name=CAL21228.1;Note=Similar to Escherichia coli hypothetical protein YbeA SW:YBEA_ECOLI (P05850) (155 aa) fasta scores: E(): 0%2C91.0%25 id in 156 aa%2C and to Haemophilus influenzae hypothetical protein HI0033 SW:YBEA_HAEIN (P44470) (155 aa) fasta scores: E(): 0%2C 82.7%25 id in 156 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21228.1;transl_table=11
AL590842.1	EMBL	gene	2928051	2928368	.	-	.	ID=gene2580;Name=YPO2606;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2606
AL590842.1	EMBL	CDS	2928051	2928368	.	-	0	ID=cds2538;Parent=gene2580;Dbxref=GOA:Q7CJV4,InterPro:IPR004394,InterPro:IPR025656,UniProtKB/TrEMBL:Q7CJV4,NCBI_GP:CAL21229.1;Name=CAL21229.1;Note=Similar to Escherichia coli hypothetical protein YbeB SW:YBEB_ECOLI (P05848) (105 aa) fasta scores: E(): 0%2C84.8%25 id in 105 aa%2C and to Haemophilus influenzae hypothetical protein HI0034 SW:YBEB_HAEIN (P44471) (102 aa) fasta scores: E(): 1.5e-22%2C 60.4%25 id in 101 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21229.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2928054	2928359	.	-	.	ID=id6179;Note=Pfam match to entry PF02410 DUF143%2C %2C score 191.50%2CE-value 1.4e-53;gbkey=misc_feature;inference=protein motif:PF02410
AL590842.1	EMBL	sequence_feature	2928276	2928299	.	-	.	ID=id6180;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2928592	2929254	.	-	.	ID=gene2581;Name=nadD;gbkey=Gene;gene=nadD;gene_biotype=protein_coding;locus_tag=YPO2607
AL590842.1	EMBL	CDS	2928592	2929254	.	-	0	ID=cds2539;Parent=gene2581;Dbxref=GOA:Q8ZDG1,InterPro:IPR004821,InterPro:IPR005248,InterPro:IPR014729,NCBI_GP:CAL21230.1;Name=CAL21230.1;Note=Similar to Escherichia coli nicotinate-nucleotide adenylyltransferase NadD SW:NADD_ECOLI (P52085) (213 aa) fasta scores: E(): 0%2C 58.8%25 id in 211 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA4006 TR:AAG07393 (EMBL:AE004817) (214 aa) fasta scores: E(): 0%2C49.3%25 id in 209 aa;gbkey=CDS;gene=nadD;inference=similar to sequence:INSDC:AE004817;product=putative nicotinate-nucleotide adenylyltransferase;protein_id=CAL21230.1;transl_table=11
AL590842.1	EMBL	gene	2929244	2930278	.	-	.	ID=gene2582;Name=holA;gbkey=Gene;gene=holA;gene_biotype=protein_coding;locus_tag=YPO2608
AL590842.1	EMBL	CDS	2929244	2930278	.	-	0	ID=cds2540;Parent=gene2582;Dbxref=GOA:Q7CJV3,InterPro:IPR005790,InterPro:IPR008921,InterPro:IPR010372,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CJV3,NCBI_GP:CAL21231.1;Name=CAL21231.1;Note=Similar to Escherichia coli DNA polymerase III%2Cdelta subunit HolA SW:HOLA_ECOLI (P28630) (343 aa) fasta scores: E(): 0%2C 71.9%25 id in 342 aa%2C and to Vibrio cholerae DNA polymerase III%2C delta subunit VC0953 TR:Q9KTE9 (EMBL:AE004177) (342 aa) fasta scores: E(): 0%2C 48.5%25 id in 332 aa;gbkey=CDS;gene=holA;inference=similar to sequence:INSDC:AE004177;product=DNA polymerase III%2C delta subunit;protein_id=CAL21231.1;transl_table=11
AL590842.1	EMBL	gene	2930275	2930898	.	-	.	ID=gene2583;Name=rlpB;gbkey=Gene;gene=rlpB;gene_biotype=protein_coding;locus_tag=YPO2609
AL590842.1	EMBL	CDS	2930275	2930898	.	-	0	ID=cds2541;Parent=gene2583;Dbxref=GOA:Q7CJV2,InterPro:IPR007485,NCBI_GP:CAL21232.1;Name=CAL21232.1;Note=Similar to Escherichia coli rare lipoprotein B precursor RlpB SW:RLPB_ECOLI (P10101) (193 aa) fasta scores: E(): 0%2C 48.7%25 id in 193 aa%2C and to Vibrio cholerae rare lipoprotein B VC0954 TR:Q9KTE8 (EMBL:AE004177) (213 aa) fasta scores: E(): 4.5e-17%2C 34.8%25 id in 198 aa;gbkey=CDS;gene=rlpB;inference=similar to sequence:INSDC:AE004177;product=rare lipoprotein B precursor;protein_id=CAL21232.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2930839	2930871	.	-	.	ID=id6181;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=rlpB;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	2930913	2933495	.	-	.	ID=gene2584;Name=leuS;gbkey=Gene;gene=leuS;gene_biotype=protein_coding;locus_tag=YPO2610
AL590842.1	EMBL	CDS	2930913	2933495	.	-	0	ID=cds2542;Parent=gene2584;Dbxref=GOA:Q8ZDF8,InterPro:IPR001412,InterPro:IPR002300,InterPro:IPR002302,InterPro:IPR009008,InterPro:IPR009080,InterPro:IPR013155,InterPro:IPR014729,InterPro:IPR025709,NCBI_GP:CAL21233.1;Name=CAL21233.1;Note=Similar to Escherichia coli leucyl-tRNA synthetase LeuS SW:SYL_ECOLI (P07813) (860 aa) fasta scores: E(): 0%2C84.8%25 id in 860 aa%2C and to Vibrio cholerae leucyl-tRNA synthetase VC0956 TR:Q9KTE6 (EMBL:AE004177) (894 aa) fasta scores: E(): 0%2C 74.5%25 id in 858 aa;gbkey=CDS;gene=leuS;inference=similar to sequence:INSDC:AE004177;product=leucyl-tRNA synthetase;protein_id=CAL21233.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2931345	2933459	.	-	.	ID=id6182;Note=Pfam match to entry PF00133 tRNA-synt_1%2C tRNA synthetases class I (I%2C L%2C M and V)%2C score 970.00%2C E-value 6e-288;gbkey=misc_feature;gene=leuS;inference=protein motif:PF00133
AL590842.1	EMBL	sequence_feature	2933337	2933372	.	-	.	ID=id6183;Note=PS00178 Aminoacyl-transfer RNA synthetases class-I signature.;gbkey=misc_feature;gene=leuS;inference=protein motif:ProSite:PS00178
AL590842.1	EMBL	gene	2933756	2934238	.	+	.	ID=gene2585;Name=YPO2611;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2611
AL590842.1	EMBL	CDS	2933756	2934238	.	+	0	ID=cds2543;Parent=gene2585;Dbxref=InterPro:IPR009912,UniProtKB/TrEMBL:Q0WDS1,NCBI_GP:CAL21234.1;Name=CAL21234.1;Note=Similar to Escherichia coli hypothetical protein YbeL SW:YBEL_ECOLI (P46129) (160 aa) fasta scores: E(): 0%2C78.8%25 id in 160 aa%2C and to Vibrio cholerae hypothetical protein VC0957 TR:Q9KTE5 (EMBL:AE004177) (156 aa) fasta scores: E(): 6.8e-19%2C 36.3%25 id in 160 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004177;product=conserved hypothetical protein;protein_id=CAL21234.1;transl_table=11
AL590842.1	EMBL	gene	2934372	2935100	.	-	.	ID=gene2586;Name=gltL;gbkey=Gene;gene=gltL;gene_biotype=protein_coding;locus_tag=YPO2612
AL590842.1	EMBL	CDS	2934372	2935100	.	-	0	ID=cds2544;Parent=gene2586;Dbxref=GOA:Q7CJV1,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CJV1,NCBI_GP:CAL21235.1;Name=CAL21235.1;Note=Similar to Corynebacterium glutamicum glutamate transport ATP-binding protein GluA gluA SW:GLUA_CORGL (P48243) (242 aa) fasta scores: E(): 0%2C 63.8%25 id in 240 aa%2Cand to Escherichia coli glutamate/aspartate transport ATP-binding protein GltL SW:GLTL_ECOLI (P41076) (241 aa) fasta scores: E(): 0%2C 88.0%25 id in 241 aa. similar to YPO2514 (54.8%25 identity in 239 aa overlap) and YPO1848 (50.0%25 identity in 246 aa overlap).;gbkey=CDS;gene=gltL;product=putative glutamate/aspartate transport ATP-binding protein;protein_id=CAL21235.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2934462	2935019	.	-	.	ID=id6184;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 218.80%2C E-value 8.1e-62;gbkey=misc_feature;gene=gltL;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2934645	2934689	.	-	.	ID=id6185;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=gltL;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	2934975	2934998	.	-	.	ID=id6186;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=gltL;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2935097	2935771	.	-	.	ID=gene2587;Name=gltK;gbkey=Gene;gene=gltK;gene_biotype=protein_coding;locus_tag=YPO2613
AL590842.1	EMBL	CDS	2935097	2935771	.	-	0	ID=cds2545;Parent=gene2587;Dbxref=GOA:Q7CJV0,InterPro:IPR000515,InterPro:IPR010065,UniProtKB/TrEMBL:Q7CJV0,NCBI_GP:CAL21236.1;Name=CAL21236.1;Note=Similar to Escherichia coli glutamate/aspartate transport system permease protein GltK SW:GLTK_ECOLI (P41075) (224 aa) fasta scores: E(): 0%2C 86.1%25 id in 223 aa%2Cand to Pseudomonas aeruginosa probable permease of ABC transporter PA1340 TR:AAG04729 (EMBL:AE004563) (222 aa) fasta scores: E(): 0%2C 53.7%25 id in 218 aa;gbkey=CDS;gene=gltK;inference=similar to sequence:INSDC:AE004563;product=putative glutamate/aspartate transport system permease;protein_id=CAL21236.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2935115	2935180	.	-	.	ID=id6187;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltK;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2935184	2935417	.	-	.	ID=id6188;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 80.70%2C E-value 3e-20;gbkey=misc_feature;gene=gltK;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	2935241	2935306	.	-	.	ID=id6189;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltK;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2935424	2935480	.	-	.	ID=id6190;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltK;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2935526	2935591	.	-	.	ID=id6191;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltK;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2935661	2935726	.	-	.	ID=id6192;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltK;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2935771	2936511	.	-	.	ID=gene2588;Name=gltJ;gbkey=Gene;gene=gltJ;gene_biotype=protein_coding;locus_tag=YPO2614
AL590842.1	EMBL	CDS	2935771	2936511	.	-	0	ID=cds2546;Parent=gene2588;Dbxref=GOA:Q0WDR8,InterPro:IPR000515,InterPro:IPR010065,UniProtKB/TrEMBL:Q0WDR8,NCBI_GP:CAL21237.1;Name=CAL21237.1;Note=Similar to Rhodobacter capsulatus glutamate/glutamine/aspartate/asparagine transport system permease protein BztB SW:BZTB_RHOCA (Q52664) (426 aa) fasta scores: E(): 3.3e-12%2C 30.3%25 id in 238 aa%2C and to Escherichia coli glutamate/aspartate transport system permease protein GltJ SW:GLTJ_ECOLI (P41074) (246 aa) fasta scores: E(): 0%2C 85.0%25 id in 246 aa;gbkey=CDS;gene=gltJ;inference=protein motif:TMHMM:2.0;product=putative glutamate/aspartate transport system permease;protein_id=CAL21237.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2935813	2935878	.	-	.	ID=id6193;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltJ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2935894	2936115	.	-	.	ID=id6194;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 67.50%2C E-value 2.9e-16;gbkey=misc_feature;gene=gltJ;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	2936131	2936187	.	-	.	ID=id6195;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltJ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2936248	2936313	.	-	.	ID=id6196;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltJ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2936353	2936418	.	-	.	ID=id6197;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltJ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2936434	2936490	.	-	.	ID=id6198;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=gltJ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2936685	2937602	.	-	.	ID=gene2589;Name=glnH;gbkey=Gene;gene=glnH;gene_biotype=protein_coding;locus_tag=YPO2615
AL590842.1	EMBL	CDS	2936685	2937602	.	-	0	ID=cds2547;Parent=gene2589;Dbxref=GOA:Q7CJU9,InterPro:IPR001638,UniProtKB/TrEMBL:Q7CJU9,NCBI_GP:CAL21238.1;Name=CAL21238.1;Note=Similar to Bacillus stearothermophilus glutamine-binding protein GlnH SW:GLNH_BACST (P27676) (262 aa) fasta scores: E(): 4.9e-14%2C 30.7%25 id in 244 aa%2C and to Escherichia coli amino-acid ABC transporter binding protein YbeJ SW:YBEJ_ECOLI (P37902) (302 aa) fasta scores: E(): 0%2C78.7%25 id in 305 aa;gbkey=CDS;gene=glnH;product=putative amino acid-binding protein precursor;protein_id=CAL21238.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2936784	2937596	.	-	.	ID=id6199;Note=Pfam match to entry PF00497 SBP_bac_3%2C Bacterial extracellular solute-binding proteins%2C family 3%2C score 89.80%2C E-value 5.6e-23;gbkey=misc_feature;gene=glnH;inference=protein motif:PF00497
AL590842.1	EMBL	gene	2938367	2939914	.	-	.	ID=gene2590;Name=cutE;gbkey=Gene;gene=cutE;gene_biotype=protein_coding;gene_synonym=lnt;locus_tag=YPO2616
AL590842.1	EMBL	CDS	2938367	2939914	.	-	0	ID=cds2548;Parent=gene2590;Dbxref=GOA:Q8D124,InterPro:IPR003010,InterPro:IPR004563,NCBI_GP:CAL21239.1;Name=CAL21239.1;Note=Similar to Salmonella typhimurium apolipoprotein N-acyltransferase CutE TR:O87576 (EMBL:AF116773) (512 aa) fasta scores: E(): 0%2C 64.4%25 id in 511 aa%2C and to Escherichia coli apolipoprotein N-acyltransferase CutE SW:LNT_ECOLI (P23930) (512 aa) fasta scores: E(): 0%2C 65.2%25 id in 511 aa;gbkey=CDS;gene=cutE;inference=similar to sequence:INSDC:AF116773;product=putative apolipoprotein N-acyltransferase;protein_id=CAL21239.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2938391	2938447	.	-	.	ID=id6200;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=cutE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2939288	2939338	.	-	.	ID=id6201;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=cutE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2939360	2939425	.	-	.	ID=id6202;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=cutE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2939486	2939542	.	-	.	ID=id6203;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=cutE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2939582	2939647	.	-	.	ID=id6204;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=cutE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2939678	2939743	.	-	.	ID=id6205;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=cutE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2939765	2939815	.	-	.	ID=id6206;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=cutE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2939828	2939878	.	-	.	ID=id6207;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=cutE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2939922	2940800	.	-	.	ID=gene2591;Name=ybeX;gbkey=Gene;gene=ybeX;gene_biotype=protein_coding;locus_tag=YPO2617
AL590842.1	EMBL	CDS	2939922	2940800	.	-	0	ID=cds2549;Parent=gene2591;Dbxref=GOA:Q7CJU8,InterPro:IPR000644,InterPro:IPR005170,InterPro:IPR016166,InterPro:IPR016169,UniProtKB/TrEMBL:Q7CJU8,NCBI_GP:CAL21240.1;Name=CAL21240.1;Note=Similar to Escherichia coli hypothetical transport protein YbeX SW:YBEX_ECOLI (P77392) (292 aa) fasta scores: E(): 0%2C 86.6%25 id in 292 aa%2C and to Salmonella typhimurium integral membrane protein CorC TR:O87575 (EMBL:AF085347) (292 aa) fasta scores: E(): 0%2C 85.3%25 id in 292 aa;gbkey=CDS;gene=ybeX;inference=similar to sequence:INSDC:AF085347;product=putative membrane protein;protein_id=CAL21240.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2940234	2940395	.	-	.	ID=id6208;Note=Pfam match to entry PF00571 CBS%2C CBS domain%2C score 23.00%2C E-value 0.0071;gbkey=misc_feature;gene=ybeX;inference=protein motif:PF00571
AL590842.1	EMBL	sequence_feature	2940420	2940584	.	-	.	ID=id6209;Note=Pfam match to entry PF00571 CBS%2C CBS domain%2C score 43.00%2C E-value 6.7e-09;gbkey=misc_feature;gene=ybeX;inference=protein motif:PF00571
AL590842.1	EMBL	gene	2940918	2941391	.	-	.	ID=gene2592;Name=YPO2618;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2618
AL590842.1	EMBL	CDS	2940918	2941391	.	-	0	ID=cds2550;Parent=gene2592;Dbxref=GOA:Q8ZDF0,InterPro:IPR002036,InterPro:IPR020549,InterPro:IPR023091,NCBI_GP:CAL21241.1;Name=CAL21241.1;Note=Similar to Escherichia coli hypothetical protein YbeY SW:YBEY_ECOLI (P77385) (155 aa) fasta scores: E(): 0%2C76.1%25 id in 155 aa%2C and to Haemophilus influenzae hypothetical protein HI0004 SW:YBEY_HAEIN (P71335) (154 aa) fasta scores: E(): 0%2C 69.0%25 id in 155 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21241.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2940981	2941256	.	-	.	ID=id6210;Note=Pfam match to entry PF02130 UPF0054%2C Uncharacterized protein family UPF0054%2C score 170.90%2C E-value 2.1e-47;gbkey=misc_feature;inference=protein motif:PF02130
AL590842.1	EMBL	sequence_feature	2941020	2941052	.	-	.	ID=id6211;Note=PS01306 Uncharacterized protein family UPF0054 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01306
AL590842.1	EMBL	gene	2941388	2942500	.	-	.	ID=gene2593;Name=YPO2619;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2619
AL590842.1	EMBL	CDS	2941388	2942500	.	-	0	ID=cds2551;Parent=gene2593;Dbxref=GOA:Q7CJU7,InterPro:IPR003714,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CJU7,NCBI_GP:CAL21242.1;Name=CAL21242.1;Note=C-terminal domain similar to C-terminal domain of Escherichia coli phosphate starvation-inducible protein PhoH SW:PHOH_ECOLI (P31544) (354 aa) fasta scores: E(): 8.1e-29%2C 41.4%25 id in 232 aa%2C and to Escherichia coli PhoH-like protein YbeZ SW:PHOL_ECOLI (P77349) (359 aa) fasta scores: E(): 0%2C 86.6%25 id in 350 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21242.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2941997	2942020	.	-	.	ID=id6212;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2942788	2944212	.	-	.	ID=gene2594;Name=miaB;gbkey=Gene;gene=miaB;gene_biotype=protein_coding;locus_tag=YPO2620
AL590842.1	EMBL	CDS	2942788	2944212	.	-	0	ID=cds2552;Parent=gene2594;Dbxref=GOA:Q0WDR2,InterPro:IPR002792,InterPro:IPR005839,InterPro:IPR006463,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR013848,InterPro:IPR020612,InterPro:IPR023404,InterPro:IPR023970,NCBI_GP:CAL21243.1;Name=CAL21243.1;Note=Similar to Salmonella typhimurium putative tRNA-thiotransferase MiaB TR:Q9RCI2 (EMBL:AJ249116) (474 aa) fasta scores: E(): 0%2C 83.3%25 id in 474 aa%2C and to Escherichia coli hypothetical protein YleA SW:YLEA_ECOLI (P77645) (474 aa) fasta scores: E(): 0%2C 83.8%25 id in 474 aa;gbkey=CDS;gene=miaB;inference=similar to sequence:INSDC:AJ249116;product=putative tRNA-thiotransferase;protein_id=CAL21243.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2942893	2944203	.	-	.	ID=id6213;Note=Pfam match to entry PF00919 UPF0004%2C Uncharacterized protein family UPF0004%2C score 846.40%2C E-value 3.9e-266;gbkey=misc_feature;gene=miaB;inference=protein motif:PF00919
AL590842.1	EMBL	sequence_feature	2943700	2943762	.	-	.	ID=id6214;Note=PS01278 Uncharacterized protein family UPF0004 signature.;gbkey=misc_feature;gene=miaB;inference=protein motif:ProSite:PS01278
AL590842.1	EMBL	gene	2944454	2945635	.	+	.	ID=gene2595;Name=ubiF;gbkey=Gene;gene=ubiF;gene_biotype=protein_coding;locus_tag=YPO2621
AL590842.1	EMBL	CDS	2944454	2945635	.	+	0	ID=cds2553;Parent=gene2595;Dbxref=GOA:Q7CJU6,InterPro:IPR002938,InterPro:IPR003042,InterPro:IPR010971,UniProtKB/TrEMBL:Q7CJU6,NCBI_GP:CAL21244.1;Name=CAL21244.1;Note=Similar to Escherichia coli 2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol hydroxylase UbiF SW:UBIF_ECOLI (P75728) (391 aa) fasta scores: E(): 0%2C63.8%25 id in 390 aa%2C and to Vibrio cholerae VisC-related protein VC0963 TR:Q9KTD9 (EMBL:AE004178) (397 aa) fasta scores: E(): 0%2C 56.9%25 id in 390 aa;gbkey=CDS;gene=ubiF;inference=similar to sequence:INSDC:AE004178;product=putative 2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol hydroxylase;protein_id=CAL21244.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2944928	2945509	.	+	.	ID=id6215;Note=Pfam match to entry PF01360 Monooxygenase%2CMonooxygenase%2C score 125.30%2C E-value 1.1e-33;gbkey=misc_feature;gene=ubiF;inference=protein motif:PF01360
AL590842.1	EMBL	tRNA	2946029	2946103	.	-	.	ID=rna53;Note=tRNA Gln anticodon CTG%2C Cove score 74.52;gbkey=tRNA;product=tRNA-Gln
AL590842.1	EMBL	exon	2946029	2946103	.	-	.	ID=id6216;Parent=rna53;Note=tRNA Gln anticodon CTG%2C Cove score 74.52;gbkey=tRNA;product=tRNA-Gln
AL590842.1	EMBL	tRNA	2946109	2946185	.	-	.	ID=rna54;Note=tRNA Met anticodon CAT%2C Cove score 94.35;gbkey=tRNA;product=tRNA-Met
AL590842.1	EMBL	exon	2946109	2946185	.	-	.	ID=id6217;Parent=rna54;Note=tRNA Met anticodon CAT%2C Cove score 94.35;gbkey=tRNA;product=tRNA-Met
AL590842.1	EMBL	tRNA	2946218	2946292	.	-	.	ID=rna55;Note=tRNA Gln anticodon TTG%2C Cove score 75.01;gbkey=tRNA;product=tRNA-Gln
AL590842.1	EMBL	exon	2946218	2946292	.	-	.	ID=id6218;Parent=rna55;Note=tRNA Gln anticodon TTG%2C Cove score 75.01;gbkey=tRNA;product=tRNA-Gln
AL590842.1	EMBL	tRNA	2946322	2946406	.	-	.	ID=rna56;Note=tRNA Leu anticodon TAG%2C Cove score 76.99;gbkey=tRNA;product=tRNA-Leu
AL590842.1	EMBL	exon	2946322	2946406	.	-	.	ID=id6219;Parent=rna56;Note=tRNA Leu anticodon TAG%2C Cove score 76.99;gbkey=tRNA;product=tRNA-Leu
AL590842.1	EMBL	tRNA	2946414	2946490	.	-	.	ID=rna57;Note=tRNA Met anticodon CAT%2C Cove score 94.35;gbkey=tRNA;product=tRNA-Met
AL590842.1	EMBL	exon	2946414	2946490	.	-	.	ID=id6220;Parent=rna57;Note=tRNA Met anticodon CAT%2C Cove score 94.35;gbkey=tRNA;product=tRNA-Met
AL590842.1	EMBL	gene	2946762	2946899	.	+	.	ID=gene2596;Name=YPO2622;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2622
AL590842.1	EMBL	CDS	2946762	2946899	.	+	0	ID=cds2554;Parent=gene2596;Dbxref=UniProtKB/TrEMBL:Q0WDR0,NCBI_GP:CAL21245.1;Name=CAL21245.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21245.1;transl_table=11
AL590842.1	EMBL	gene	2946948	2948612	.	-	.	ID=gene2597;Name=asnB;gbkey=Gene;gene=asnB;gene_biotype=protein_coding;locus_tag=YPO2623
AL590842.1	EMBL	CDS	2946948	2948612	.	-	0	ID=cds2555;Parent=gene2597;Dbxref=GOA:Q7CJU5,InterPro:IPR000583,InterPro:IPR001962,InterPro:IPR006426,InterPro:IPR014729,InterPro:IPR017932,InterPro:IPR029055,UniProtKB/TrEMBL:Q7CJU5,NCBI_GP:CAL21246.1;Name=CAL21246.1;Note=Similar to Escherichia coli glutamine-hydrolyzing%2Casparagine synthetase B AsnB SW:ASNB_ECOLI (P22106) (553 aa) fasta scores: E(): 0%2C 90.8%25 id in 553 aa%2C and to Vibrio cholerae asparagine synthetase B%2C VC0991 TR:Q9KTB2 (EMBL:AE004180) (554 aa) fasta scores: E(): 0%2C 75.6%25 id in 554 aa;gbkey=CDS;gene=asnB;inference=similar to sequence:INSDC:AE004180;product=asparagine synthetase B;protein_id=CAL21246.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2946951	2948144	.	-	.	ID=id6221;Note=Pfam match to entry PF00733 Asn_synthase%2C Asparagine synthase%2C score 818.40%2C E-value 2.6e-242;gbkey=misc_feature;gene=asnB;inference=protein motif:PF00733
AL590842.1	EMBL	sequence_feature	2948166	2948609	.	-	.	ID=id6222;Note=Pfam match to entry PF00310 GATase_2%2C Glutamine amidotransferases class-II%2C score 201.20%2C E-value 5.3e-68;gbkey=misc_feature;gene=asnB;inference=protein motif:PF00310
AL590842.1	EMBL	sequence_feature	2948595	2948612	.	-	.	ID=id6223;Note=PS00443 Glutamine amidotransferases class-II active site.;gbkey=misc_feature;gene=asnB;inference=protein motif:ProSite:PS00443
AL590842.1	EMBL	gene	2948967	2949719	.	-	.	ID=gene2598;Name=nagD;gbkey=Gene;gene=nagD;gene_biotype=protein_coding;locus_tag=YPO2624
AL590842.1	EMBL	CDS	2948967	2949719	.	-	0	ID=cds2556;Parent=gene2598;Dbxref=InterPro:IPR006357,InterPro:IPR023214,InterPro:IPR023215,UniProtKB/TrEMBL:Q7CJU4,NCBI_GP:CAL21247.1;Name=CAL21247.1;Note=Similar to Escherichia coli N-acetylglucosamine utilization operon hypothetical protein NagD SW:NAGD_ECOLI (P15302) (250 aa) fasta scores: E(): 0%2C 86.0%25 id in 250 aa%2Cand to Streptomyces coelicolor conserved hypothetical protein SCE20.17c TR:Q9RDA8 (EMBL:AL136058) (259 aa) fasta scores: E(): 0%2C 45.0%25 id in 249 aa;gbkey=CDS;gene=nagD;inference=similar to sequence:INSDC:AL136058;product=putative N-acetylglucosamine metabolism protein;protein_id=CAL21247.1;transl_table=11
AL590842.1	EMBL	gene	2949792	2951021	.	-	.	ID=gene2599;Name=nagC;gbkey=Gene;gene=nagC;gene_biotype=protein_coding;gene_synonym=nagR;locus_tag=YPO2625
AL590842.1	EMBL	CDS	2949792	2951021	.	-	0	ID=cds2557;Parent=gene2599;Dbxref=GOA:Q0WDQ7,InterPro:IPR000600,InterPro:IPR000835,InterPro:IPR011991,UniProtKB/TrEMBL:Q0WDQ7,NCBI_GP:CAL21248.1;Name=CAL21248.1;Note=Similar to Escherichia coli N-acetylglucosamine repressor NagC or NagR or B0676 SW:NAGC_ECOLI (P15301) (406 aa) fasta scores: E(): 0%2C 78.0%25 id in 405 aa%2C and to Vibrio cholerae probable N-acetylglucosamine regulatory protein VC0993 TR:Q9KTB0 (EMBL:AE004181) (404 aa) fasta scores: E(): 0%2C 63.3%25 id in 403 aa;gbkey=CDS;gene=nagC;inference=similar to sequence:INSDC:AE004181;product=putative N-acetylglucosamine regulatory protein;protein_id=CAL21248.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2950197	2950751	.	-	.	ID=id6224;Note=Pfam match to entry PF00480 ROK%2C ROK family%2C score 258.80%2C E-value 7.2e-76;gbkey=misc_feature;gene=nagC;inference=protein motif:PF00480
AL590842.1	EMBL	sequence_feature	2950278	2950361	.	-	.	ID=id6225;Note=PS01125 ROK family signature.;gbkey=misc_feature;gene=nagC;inference=protein motif:ProSite:PS01125
AL590842.1	EMBL	sequence_feature	2950857	2950922	.	-	.	ID=id6226;Note=Predicted helix-turn-helix motif with score 989 (+2.56 SD) at aa 34-55%2C sequence ISRIQIADLSQLAPASVTKITR;gbkey=misc_feature;gene=nagC
AL590842.1	EMBL	gene	2951035	2952180	.	-	.	ID=gene2600;Name=nagA;gbkey=Gene;gene=nagA;gene_biotype=protein_coding;locus_tag=YPO2626
AL590842.1	EMBL	CDS	2951035	2952180	.	-	0	ID=cds2558;Parent=gene2600;Dbxref=GOA:Q7CJU3,InterPro:IPR003764,InterPro:IPR006680,InterPro:IPR011059,UniProtKB/TrEMBL:Q7CJU3,NCBI_GP:CAL21249.1;Name=CAL21249.1;Note=Similar to Escherichia coli N-acetylglucosamine-6-phosphate deacetylase NagA SW:NAGA_ECOLI (P15300) (382 aa) fasta scores: E(): 0%2C 75.1%25 id in 381 aa%2C and to Vibrio cholerae N-acetylglucosamine-6-phosphate deacetylase NagA SW:NAGA_VIBCH (O32445) (378 aa) fasta scores: E(): 0%2C 64.1%25 id in 376 aa;gbkey=CDS;gene=nagA;product=putative N-acetylglucosamine-6-phosphate deacetylase;protein_id=CAL21249.1;transl_table=11
AL590842.1	EMBL	gene	2952200	2953000	.	-	.	ID=gene2601;Name=glmD;gbkey=Gene;gene=glmD;gene_biotype=protein_coding;gene_synonym=nagB;locus_tag=YPO2627
AL590842.1	EMBL	CDS	2952200	2953000	.	-	0	ID=cds2559;Parent=gene2601;Dbxref=GOA:Q8ZDE1,InterPro:IPR004547,InterPro:IPR006148,InterPro:IPR018321,NCBI_GP:CAL21250.1;Name=CAL21250.1;Note=Similar to Escherichia coli glucosamine-6-phosphate isomerase NagB SW:NAGB_ECOLI (P09375) (266 aa) fasta scores: E(): 0%2C 85.7%25 id in 266 aa%2C and to Vibrio cholerae probable glucosamine-6-phosphate isomerase VCA1025 TR:Q9KKS5 (EMBL:AE004428) (266 aa) fasta scores: E(): 0%2C79.1%25 id in 263 aa;gbkey=CDS;gene=glmD;inference=similar to sequence:INSDC:AE004428;product=putative glucosamine-6-phosphate isomerase;protein_id=CAL21250.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2952278	2952931	.	-	.	ID=id6227;Note=Pfam match to entry PF01182 Glucosamine_iso%2CGlucosamine-6-phosphate isomerase%2C score 519.20%2C E-value 3.1e-152;gbkey=misc_feature;gene=glmD;inference=protein motif:PF01182
AL590842.1	EMBL	sequence_feature	2952572	2952628	.	-	.	ID=id6228;Note=PS01161 Glucosamine/galactosamine-6-phosphate isomerases signature.;gbkey=misc_feature;gene=glmD;inference=protein motif:ProSite:PS01161
AL590842.1	EMBL	gene	2953400	2955433	.	+	.	ID=gene2602;Name=nagE;gbkey=Gene;gene=nagE;gene_biotype=protein_coding;gene_synonym=pstN;locus_tag=YPO2628
AL590842.1	EMBL	CDS	2953400	2955433	.	+	0	ID=cds2560;Parent=gene2602;Dbxref=GOA:Q7CJU2,InterPro:IPR001127,InterPro:IPR001996,InterPro:IPR003352,InterPro:IPR010974,InterPro:IPR011055,InterPro:IPR013013,InterPro:IPR018113,UniProtKB/TrEMBL:Q7CJU2,NCBI_GP:CAL21251.1;Name=CAL21251.1;Note=Similar to Escherichia coli PTS system%2CN-acetylglucosamine-specific IIABC component NagE SW:PTAA_ECOLI (P09323) (648 aa) fasta scores: E(): 0%2C 52.6%25 id in 683 aa%2C and to Vibrio furnissii PTS permease for N-acetylglucosamine and glucose NagE TR:P96161 (EMBL:U65014) (496 aa) fasta scores: E(): 0%2C 69.9%25 id in 495 aa;gbkey=CDS;gene=nagE;inference=similar to sequence:INSDC:U65014;product=pts system%2C N-acetylglucosamine-specific IIABC component;protein_id=CAL21251.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2953430	2954371	.	+	.	ID=id6229;Note=Pfam match to entry PF02378 PTS_EIIC%2C %2C score 374.50%2C E-value 1.1e-108;gbkey=misc_feature;gene=nagE;inference=protein motif:PF02378
AL590842.1	EMBL	sequence_feature	2953433	2953501	.	+	.	ID=id6230;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=nagE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2953544	2953612	.	+	.	ID=id6231;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=nagE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2953631	2953699	.	+	.	ID=id6232;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=nagE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2953868	2953936	.	+	.	ID=id6233;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=nagE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2953973	2954041	.	+	.	ID=id6234;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=nagE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2954162	2954230	.	+	.	ID=id6235;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=nagE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2954249	2954317	.	+	.	ID=id6236;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=nagE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2954360	2954428	.	+	.	ID=id6237;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=nagE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2954465	2954533	.	+	.	ID=id6238;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=nagE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2954666	2954770	.	+	.	ID=id6239;Note=Pfam match to entry PF00367 PTS_EIIB%2Cphosphotransferase system%2C EIIB%2C score 59.90%2C E-value 9.3e-16;gbkey=misc_feature;gene=nagE;inference=protein motif:PF00367
AL590842.1	EMBL	sequence_feature	2954702	2954755	.	+	.	ID=id6240;Note=PS01035 PTS EIIB domains cysteine phosphorylation site signature.;gbkey=misc_feature;gene=nagE;inference=protein motif:ProSite:PS01035
AL590842.1	EMBL	sequence_feature	2955032	2955346	.	+	.	ID=id6241;Note=Pfam match to entry PF00358 PTS_EIIA_1%2Cphosphoenolpyruvate-dependent sugar phosphotransferase system%2C EIIA 1%2C score 216.90%2C E-value 2.9e-61;gbkey=misc_feature;gene=nagE;inference=protein motif:PF00358
AL590842.1	EMBL	sequence_feature	2955170	2955208	.	+	.	ID=id6242;Note=PS00371 PTS EIIA domains phosphorylation site signature 1.;gbkey=misc_feature;gene=nagE;inference=protein motif:ProSite:PS00371
AL590842.1	EMBL	repeat_region	2955553	2956264	.	+	.	ID=id6243;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	2955698	2956156	.	+	.	ID=gene2603;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO2629
AL590842.1	EMBL	CDS	2955698	2956156	.	+	0	ID=cds2561;Parent=gene2603;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL21252.1;Name=CAL21252.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL21252.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2955752	2956063	.	+	.	ID=id6244;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	2956358	2958025	.	+	.	ID=gene2604;Name=glnS;gbkey=Gene;gene=glnS;gene_biotype=protein_coding;locus_tag=YPO2630
AL590842.1	EMBL	CDS	2956358	2958025	.	+	0	ID=cds2562;Parent=gene2604;Dbxref=GOA:Q8ZDD9,InterPro:IPR000924,InterPro:IPR001412,InterPro:IPR004514,InterPro:IPR011035,InterPro:IPR014729,InterPro:IPR020056,InterPro:IPR020058,InterPro:IPR020059,InterPro:IPR020061,InterPro:IPR022861,NCBI_GP:CAL21253.1;Name=CAL21253.1;Note=Similar to Escherichia coli glutaminyl-tRNA synthetase GlnS SW:SYQ_ECOLI (P00962) (553 aa) fasta scores: E(): 0%2C 87.2%25 id in 549 aa%2C and to Vibrio cholerae glutaminyl-tRNA synthetase GlnS TR:Q9KTA6 (EMBL:AE004181) (556 aa) fasta scores: E(): 0%2C 81.1%25 id in 551 aa;gbkey=CDS;gene=glnS;inference=similar to sequence:INSDC:AE004181;product=glutaminyl-tRNA synthetase;protein_id=CAL21253.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2956436	2957881	.	+	.	ID=id6245;Note=Pfam match to entry PF00749 tRNA-synt_1c%2C tRNA synthetases class I (E and Q)%2C score 838.20%2C E-value 2.8e-248;gbkey=misc_feature;gene=glnS;inference=protein motif:PF00749
AL590842.1	EMBL	sequence_feature	2956457	2956492	.	+	.	ID=id6246;Note=PS00178 Aminoacyl-transfer RNA synthetases class-I signature.;gbkey=misc_feature;gene=glnS;inference=protein motif:ProSite:PS00178
AL590842.1	EMBL	gene	2958731	2960152	.	+	.	ID=gene2605;Name=ybfM;gbkey=Gene;gene=ybfM;gene_biotype=protein_coding;locus_tag=YPO2631
AL590842.1	EMBL	CDS	2958731	2960152	.	+	0	ID=cds2563;Parent=gene2605;Dbxref=GOA:Q7CJU1,InterPro:IPR005318,InterPro:IPR023614,UniProtKB/TrEMBL:Q7CJU1,NCBI_GP:CAL21254.1;Name=CAL21254.1;Note=Similar to Pseudomonas aeruginosa anaerobically induced porin protein E1 OprE TR:AAG03680 (EMBL:D12711) (460 aa) fasta scores: E(): 0.00094%2C 22.2%25 id in 483 aa%2Cand to Escherichia coli hypothetical protein YbfM SW:YBFM_ECOLI (P75733) (468 aa) fasta scores: E(): 0%2C 68.2%25 id in 468 aa;gbkey=CDS;gene=ybfM;inference=similar to sequence:INSDC:D12711;product=putative exported protein;protein_id=CAL21254.1;transl_table=11
AL590842.1	EMBL	pseudogene	2960480	2963141	.	+	.	ID=gene2606;Name=chb;gbkey=Gene;gene=chb;gene_biotype=pseudogene;locus_tag=YPO2632;pseudo=true
AL590842.1	EMBL	CDS	2960480	2963141	.	+	0	ID=cds2564;Parent=gene2606;Note=Similar to Serratia marcescens N-acetylglucosaminidase (chitobiase) Chb SW:CHB_SERMA (Q54468) (885 aa) fasta scores: E(): 0%2C 74.6%25 id in 889 aa%2Cand to Enterobacter sp N-acetyl-beta-D-glucosaminidase Nag1 TR:Q9ZN69 (EMBL:AB022786) (885 aa) fasta scores: E(): 0%2C74.0%25 id in 889 aa. Contains a frameshift after codon 188. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=chb;inference=similar to sequence:INSDC:AB022786;product=N-acetylglucosaminidase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	2961318	2962106	.	+	.	ID=id6247;Note=Pfam match to entry PF00728 Glyco_hydro_20%2C Glycosyl hydrolase family 20%2C score 395.80%2C E-value 4.1e-115;gbkey=misc_feature;gene=chb;inference=protein motif:PF00728
AL590842.1	EMBL	sequence_feature	2962179	2962808	.	+	.	ID=id6248;Note=Pfam match to entry PF00728 Glyco_hydro_20%2C Glycosyl hydrolase family 20%2C score 76.50%2C E-value 1e-19;gbkey=misc_feature;gene=chb;inference=protein motif:PF00728
AL590842.1	EMBL	gene	2963585	2964031	.	-	.	ID=gene2607;Name=fur;gbkey=Gene;gene=fur;gene_biotype=protein_coding;locus_tag=YPO2634
AL590842.1	EMBL	CDS	2963585	2964031	.	-	0	ID=cds2565;Parent=gene2607;Dbxref=GOA:P33086,InterPro:IPR002481,InterPro:IPR011991,NCBI_GP:CAL21256.1;Name=CAL21256.1;Note=Previously sequenced as Yersinia pestis ferric uptake regulation protein Fur SW:FUR_YERPE (P33086) (148 aa) fasta scores: E(): 0%2C 100.0%25 id in 148 aa. Similar to Escherichia coli ferric uptake regulation protein Fur SW:FUR_ECOLI (P06975) (148 aa) fasta scores: E(): 0%2C 87.6%25 id in 145 aa;gbkey=CDS;gene=fur;product=ferric uptake regulator;protein_id=CAL21256.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2963642	2964004	.	-	.	ID=id6249;Note=Pfam match to entry PF01475 FUR%2C Ferric uptake regulator family%2C score 241.10%2C E-value 1.5e-68;gbkey=misc_feature;gene=fur;inference=protein motif:PF01475
AL590842.1	EMBL	gene	2964398	2964925	.	-	.	ID=gene2608;Name=fldA;gbkey=Gene;gene=fldA;gene_biotype=protein_coding;locus_tag=YPO2635
AL590842.1	EMBL	CDS	2964398	2964925	.	-	0	ID=cds2566;Parent=gene2608;Dbxref=GOA:Q7CJU0,InterPro:IPR001226,InterPro:IPR008254,InterPro:IPR010086,InterPro:IPR029039,UniProtKB/TrEMBL:Q7CJU0,NCBI_GP:CAL21257.1;Name=CAL21257.1;Note=Similar to Escherichia coli flavodoxin 1 FldA SW:FLAV_ECOLI (P23243) (175 aa) fasta scores: E(): 0%2C 91.3%25 id in 173 aa%2C and to Klebsiella pneumoniae flavodoxin FldA SW:FLAV_KLEPN (O07026) (176 aa) fasta scores: E(): 0%2C 91.3%25 id in 173 aa;gbkey=CDS;gene=fldA;product=flavodoxin 1;protein_id=CAL21257.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2964446	2964919	.	-	.	ID=id6250;Note=Pfam match to entry PF00258 flavodoxin%2C Flavodoxins%2Cscore 305.30%2C E-value 7.5e-88;gbkey=misc_feature;gene=fldA;inference=protein motif:PF00258
AL590842.1	EMBL	sequence_feature	2964860	2964910	.	-	.	ID=id6251;Note=PS00201 Flavodoxin signature.;gbkey=misc_feature;gene=fldA;inference=protein motif:ProSite:PS00201
AL590842.1	EMBL	gene	2965342	2965629	.	-	.	ID=gene2609;Name=YPO2637;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2637
AL590842.1	EMBL	CDS	2965342	2965629	.	-	0	ID=cds2567;Parent=gene2609;Dbxref=GOA:Q7CJT9,InterPro:IPR002145,UniProtKB/TrEMBL:Q7CJT9,NCBI_GP:CAL21258.1;Name=CAL21258.1;Note=Similar to Escherichia coli hypothetical protein YbfE SW:YBFE_ECOLI (P75735) (120 aa) fasta scores: E(): 4.7e-28%2C 86.5%25 id in 89 aa%2C and to Pasteurella multocida hypothetical protein PM0354 TR:AAK02438 (EMBL:AE006071) (94 aa) fasta scores: E(): 1.3e-16%2C 61.9%25 id in 84 aa. The CDS is truncated at the N-terminus in comparison to the E. coli orthologue;gbkey=CDS;inference=similar to sequence:INSDC:AE006071;product=conserved hypothetical protein;protein_id=CAL21258.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2965348	2965479	.	-	.	ID=id6252;Note=Pfam match to entry PF01402 HTH_4%2C Helix-turn-helix protein%2C copG family%2C score 27.00%2C E-value 0.00044;gbkey=misc_feature;inference=protein motif:PF01402
AL590842.1	EMBL	gene	2965961	2966728	.	-	.	ID=gene2610;Name=YPO2638;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2638
AL590842.1	EMBL	CDS	2965961	2966728	.	-	0	ID=cds2568;Parent=gene2610;Dbxref=GOA:Q7CJT8,InterPro:IPR000073,InterPro:IPR029058,UniProtKB/TrEMBL:Q7CJT8,NCBI_GP:CAL21259.1;Name=CAL21259.1;Note=Similar to Escherichia coli putative esterase/lipase YbfF SW:YBFF_ECOLI (P75736) (254 aa) fasta scores: E(): 0%2C65.6%25 id in 253 aa%2C and to Alcaligenes eutrophus esterase EstA TR:Q9RBF3 (EMBL:AJ251831) (275 aa) fasta scores: E(): 1.5e-08%2C 22.8%25 id in 246 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ251831;product=conserved hypothetical protein;protein_id=CAL21259.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2965973	2966602	.	-	.	ID=id6253;Note=Pfam match to entry PF00561 abhydrolase%2C alpha/beta hydrolase fold%2C score 89.60%2C E-value 6.3e-23;gbkey=misc_feature;inference=protein motif:PF00561
AL590842.1	EMBL	gene	2967853	2968038	.	-	.	ID=gene2611;Name=YPO2639;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2639
AL590842.1	EMBL	CDS	2967853	2968038	.	-	0	ID=cds2569;Parent=gene2611;Dbxref=UniProtKB/TrEMBL:Q0WDP6,NCBI_GP:CAL21260.1;Name=CAL21260.1;Note=Probable gene remnant%2C similar to Enterobacter aerogenes putative integrase Int TR:O52508 (EMBL:AF039582) (344 aa) fasta scores: E(): 1e-16%2C 68.3%25 id in 60 aa%2C and to Yersinia pseudotuberculosis integrase Int TR:Q9ZEX4 (EMBL:AJ009592) (420 aa) fasta scores: E(): 1e-15%2C 66.7%25 id in 60 aa%3B~was marked partial;gbkey=CDS;inference=similar to sequence:INSDC:AJ009592;product=integrase (partial);protein_id=CAL21260.1;transl_table=11
AL590842.1	EMBL	gene	2968121	2968384	.	-	.	ID=gene2612;Name=trp1400A;gbkey=Gene;gene=trp1400A;gene_biotype=protein_coding;locus_tag=YPO2640
AL590842.1	EMBL	CDS	2968121	2968384	.	-	0	ID=cds2570;Parent=gene2612;Dbxref=GOA:Q7CJT7,InterPro:IPR002514,InterPro:IPR009057,UniProtKB/TrEMBL:Q7CJT7,NCBI_GP:CAL21261.1;Name=CAL21261.1;Note=Similar to Yersinia enterocolitica IS1400 transposase A Trp1400A TR:Q9X9H8 (EMBL:AJ132945) (96 aa) fasta scores: E(): 1.9e-24%2C 77.3%25 id in 88 aa%2C and to Salmonella enteritidis transposase TR:O06945 (EMBL:Z83734) (88 aa) fasta scores: E(): 3.2e-22%2C 70.9%25 id in 86 aa. CDS is truncated at the N-terminus in comparison to the Y. enterocolitica sequence;gbkey=CDS;gene=trp1400A;inference=similar to sequence:INSDC:Z83734;product=IS1400 transposase A;protein_id=CAL21261.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2968124	2968378	.	-	.	ID=id6254;Note=Pfam match to entry PF01527 Transposase_8%2CTransposase%2C score 121.70%2C E-value 1.4e-32;gbkey=misc_feature;gene=trp1400A;inference=protein motif:PF01527
AL590842.1	EMBL	sequence_feature	2968259	2968324	.	-	.	ID=id6255;Note=Predicted helix-turn-helix motif with score 1129 (+3.03 SD) at aa 21-42%2C sequence VSARELCRKHAISEASYYNWKA;gbkey=misc_feature;gene=trp1400A
AL590842.1	EMBL	gene	2968433	2968864	.	-	.	ID=gene2613;Name=intA;end_range=2968864,.;gbkey=Gene;gene=intA;gene_biotype=protein_coding;gene_synonym=intX,slpA;locus_tag=YPO2641;partial=true
AL590842.1	EMBL	CDS	2968433	2968864	.	-	0	ID=cds2571;Parent=gene2613;Dbxref=InterPro:IPR023109,InterPro:IPR025166,UniProtKB/TrEMBL:Q0WDP4,NCBI_GP:CAL21262.1;Name=CAL21262.1;Note=Probable gene remnant%2C similar to Escherichia coli prophage CP4-57 integrase IntA SW:INTA_ECOLI (P32053) (413 aa) fasta scores: E(): 1.3e-23%2C 45.3%25 id in 137 aa%2C and to Vibrio cholerae phage integrase VC0516 TR:Q9KUK2 (EMBL:AE004138) (413 aa) fasta scores: E(): 7.4e-18%2C 40.4%25 id in 136 aa%3B~was marked partial;end_range=2968864,.;gbkey=CDS;gene=intA;inference=similar to sequence:INSDC:AE004138;partial=true;product=phage family integrase (partial);protein_id=CAL21262.1;transl_table=11
AL590842.1	EMBL	repeat_region	2968865	2970818	.	-	.	ID=id6256;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	2968865	2968892	.	+	.	ID=id6257;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	2968931	2969713	.	-	.	ID=gene2614;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO2642
AL590842.1	EMBL	CDS	2968931	2969713	.	-	0	ID=cds2572;Parent=gene2614;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL21263.1;Name=CAL21263.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL21263.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2969006	2969545	.	-	.	ID=id6258;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	2969363	2969386	.	-	.	ID=id6259;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2969710	2970732	.	-	.	ID=gene2615;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO2643
AL590842.1	EMBL	CDS	2969710	2970732	.	-	0	ID=cds2573;Parent=gene2615;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL21264.1;Name=CAL21264.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL21264.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2969854	2970387	.	-	.	ID=id6260;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	sequence_feature	2970616	2970681	.	-	.	ID=id6261;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	2970625	2970708	.	-	.	ID=id6262;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	INVERTED	2970791	2970818	.	-	.	ID=id6263;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	pseudogene	2970819	2971556	.	+	.	ID=gene2616;Name=YPO2644;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO2644;pseudo=true
AL590842.1	EMBL	CDS	2970819	2971556	.	+	0	ID=cds2574;Parent=gene2616;Note=This CDS is disrupted by the insertion of IS100 element. Similar to C-terminal regions of Schizosaccharomyces pombe hypothetical protein in chromosome I SPAC19G12.03 TR:O13842 (EMBL:Z97209) (320 aa) fasta scores: E(): 2.3e-25%2C 44.8%25 id in 250 aa%2C and Synechocystis sp hypothetical protein SLL1306 TR:P73597 (EMBL:D90907) (335 aa) fasta scores: E(): 1.7e-13%2C 30.7%25 id in 231 aa.;gbkey=CDS;inference=similar to sequence:INSDC:Z97209;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	2971786	2972790	.	-	.	ID=gene2617;Name=proU;gbkey=Gene;gene=proU;gene_biotype=protein_coding;gene_synonym=proX;locus_tag=YPO2645
AL590842.1	EMBL	CDS	2971786	2972790	.	-	0	ID=cds2575;Parent=gene2617;Dbxref=GOA:Q7CJT4,InterPro:IPR007210,UniProtKB/TrEMBL:Q7CJT4,NCBI_GP:CAL21266.1;Name=CAL21266.1;Note=Similar to Escherichia coli glycine betaine-binding periplasmic protein ProX SW:PROX_ECOLI (P14177) (330 aa) fasta scores: E(): 0%2C 71.6%25 id in 328 aa%2C and to Pseudomonas putida glycine betaine/L-proline-binding periplasmic protein ProX TR:Q9L7Y8 (EMBL:AF218267) (342 aa) fasta scores: E(): 0%2C 49.5%25 id in 325 aa;gbkey=CDS;gene=proU;inference=similar to sequence:INSDC:AF218267;product=glycine betaine-binding periplasmic protein;protein_id=CAL21266.1;transl_table=11
AL590842.1	EMBL	gene	2972838	2974004	.	-	.	ID=gene2618;Name=proW;gbkey=Gene;gene=proW;gene_biotype=protein_coding;locus_tag=YPO2646
AL590842.1	EMBL	CDS	2972838	2974004	.	-	0	ID=cds2576;Parent=gene2618;Dbxref=GOA:Q7CJT3,InterPro:IPR000515,UniProtKB/TrEMBL:Q7CJT3,NCBI_GP:CAL21267.1;Name=CAL21267.1;Note=Similar to Escherichia coli glycine betaine/L-proline transport system permease protein ProW SW:PROW_ECOLI (P14176) (354 aa) fasta scores: E(): 0%2C 76.6%25 id in 372 aa%2C and to Pseudomonas putida glycine betaine/L-proline transport system permease protein ProW TR:Q9L7Y9 (EMBL:AF218267) (315 aa) fasta scores: E(): 0%2C62.6%25 id in 305 aa. CDS contain an extended N-terminus%2Cpossible alternative translational start sites.;gbkey=CDS;gene=proW;inference=similar to sequence:INSDC:AF218267;product=glycine betaine/L-proline transport system permease;protein_id=CAL21267.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2972949	2973014	.	-	.	ID=id6264;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=proW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2973012	2973224	.	-	.	ID=id6265;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 62.60%2C E-value 8.2e-15;gbkey=misc_feature;gene=proW;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	2973027	2973092	.	-	.	ID=id6266;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=proW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2973135	2973221	.	-	.	ID=id6267;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;gene=proW;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	2973252	2973317	.	-	.	ID=id6268;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=proW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2973396	2973461	.	-	.	ID=id6269;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=proW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2973483	2973548	.	-	.	ID=id6270;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=proW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2973561	2973626	.	-	.	ID=id6271;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=proW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2973997	2975196	.	-	.	ID=gene2619;Name=proV;gbkey=Gene;gene=proV;gene_biotype=protein_coding;locus_tag=YPO2647
AL590842.1	EMBL	CDS	2973997	2975196	.	-	0	ID=cds2577;Parent=gene2619;Dbxref=GOA:Q0WDN9,InterPro:IPR000644,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR005892,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WDN9,NCBI_GP:CAL21268.1;Name=CAL21268.1;Note=Similar to Escherichia coli glycine betaine/L-proline transport ATP-binding protein ProV SW:PROV_ECOLI (P14175) (400 aa) fasta scores: E(): 0%2C 81.7%25 id in 398 aa%2C and to Salmonella typhimurium glycine betaine/L-proline transport ATP-binding protein ProV SW:PROV_SALTY (P17328) (400 aa) fasta scores: E(): 0%2C 81.2%25 id in 398 aa;gbkey=CDS;gene=proV;product=glycine betaine/L-proline transport ATP-binding protein;protein_id=CAL21268.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2974018	2974176	.	-	.	ID=id6272;Note=Pfam match to entry PF00571 CBS%2C CBS domain%2C score 31.70%2C E-value 1.7e-05;gbkey=misc_feature;gene=proV;inference=protein motif:PF00571
AL590842.1	EMBL	sequence_feature	2974195	2974356	.	-	.	ID=id6273;Note=Pfam match to entry PF00571 CBS%2C CBS domain%2C score 1.20%2C E-value 31;gbkey=misc_feature;gene=proV;inference=protein motif:PF00571
AL590842.1	EMBL	sequence_feature	2974474	2975037	.	-	.	ID=id6274;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 233.30%2C E-value 3.4e-66;gbkey=misc_feature;gene=proV;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2974660	2974704	.	-	.	ID=id6275;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=proV;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	2974993	2975016	.	-	.	ID=id6276;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=proV;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2975872	2976843	.	-	.	ID=gene2620;Name=nrdF;gbkey=Gene;gene=nrdF;gene_biotype=protein_coding;locus_tag=YPO2648
AL590842.1	EMBL	CDS	2975872	2976843	.	-	0	ID=cds2578;Parent=gene2620;Dbxref=GOA:Q7CJT2,InterPro:IPR000358,InterPro:IPR009078,InterPro:IPR012348,InterPro:IPR026023,InterPro:IPR026494,UniProtKB/TrEMBL:Q7CJT2,NCBI_GP:CAL21269.1;Name=CAL21269.1;Note=Similar to Escherichia coli ribonucleoside-diphosphate reductase 2 beta chain NrdF SW:RIR4_ECOLI (P37146) (319 aa) fasta scores: E(): 0%2C 79.8%25 id in 317 aa%2C and to Salmonella typhimurium ribonucleoside-diphosphate reductase 2 beta chain NrdF SW:RIR4_SALTY (P17424) (319 aa) fasta scores: E(): 0%2C 79.5%25 id in 317 aa;gbkey=CDS;gene=nrdF;product=ribonucleoside-diphosphate reductase 2 beta chain;protein_id=CAL21269.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2975920	2976741	.	-	.	ID=id6277;Note=Pfam match to entry PF00268 ribonuc_red%2CRibonucleotide reductases%2C score 293.30%2C E-value 4e-100;gbkey=misc_feature;gene=nrdF;inference=protein motif:PF00268
AL590842.1	EMBL	sequence_feature	2976493	2976543	.	-	.	ID=id6278;Note=PS00368 Ribonucleotide reductase small subunit signature.;gbkey=misc_feature;gene=nrdF;inference=protein motif:ProSite:PS00368
AL590842.1	EMBL	gene	2976950	2979031	.	-	.	ID=gene2621;Name=nrdE;gbkey=Gene;gene=nrdE;gene_biotype=protein_coding;locus_tag=YPO2649
AL590842.1	EMBL	CDS	2976950	2979031	.	-	0	ID=cds2579;Parent=gene2621;Dbxref=GOA:Q0WDN7,InterPro:IPR000788,InterPro:IPR008926,InterPro:IPR013346,InterPro:IPR013509,InterPro:IPR013554,InterPro:IPR026459,UniProtKB/TrEMBL:Q0WDN7,NCBI_GP:CAL21270.1;Name=CAL21270.1;Note=Similar to Escherichia coli ribonucleoside-diphosphate reductase 2 alpha chain NrdE SW:RIR3_ECOLI (P39452) (713 aa) fasta scores: E(): 0%2C 74.2%25 id in 701 aa%2C and to Mycobacterium tuberculosis ribonucleoside-diphosphate reductase alpha chain NrdE SW:RIR1_MYCTU (P50640) (693 aa) fasta scores: E(): 0%2C 82.0%25 id in 693 aa. CDs appears to contain an N-terminal extention in comparison to the M. tuberculosis orthologue but is the same length as the E. coli protein.;gbkey=CDS;gene=nrdE;product=ribonucleoside-diphosphate reductase 2 alpha chain;protein_id=CAL21270.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2977016	2978827	.	-	.	ID=id6279;Note=Pfam match to entry PF00317 ribonucleo_red%2CRibonucleotide reductase%2C score 759.90%2C E-value 1.8e-284;gbkey=misc_feature;gene=nrdE;inference=protein motif:PF00317
AL590842.1	EMBL	sequence_feature	2977037	2977102	.	-	.	ID=id6280;Note=Predicted helix-turn-helix motif with score 1032 (+2.70 SD) at aa 644-665%2C sequence LFFRDTATTRDINKAQIYAWKK;gbkey=misc_feature;gene=nrdE
AL590842.1	EMBL	sequence_feature	2977331	2977399	.	-	.	ID=id6281;Note=PS00089 Ribonucleotide reductase large subunit signature.;gbkey=misc_feature;gene=nrdE;inference=protein motif:ProSite:PS00089
AL590842.1	EMBL	gene	2979082	2979486	.	-	.	ID=gene2622;Name=nrdI;gbkey=Gene;gene=nrdI;gene_biotype=protein_coding;locus_tag=YPO2650
AL590842.1	EMBL	CDS	2979082	2979486	.	-	0	ID=cds2580;Parent=gene2622;Dbxref=InterPro:IPR004465,InterPro:IPR020852,InterPro:IPR029039,NCBI_GP:CAL21271.1;Name=CAL21271.1;Note=Similar to Escherichia coli hypothetical protein reductase NrdI SW:NRDI_ECOLI (Q47415) (136 aa) fasta scores: E(): 0%2C 69.9%25 id in 133 aa%2C and to Salmonella typhimurium hypothetical protein NrdI SW:NRDI_SALTY (Q56109) (136 aa) fasta scores: E(): 0%2C 68.2%25 id in 132 aa;gbkey=CDS;gene=nrdI;product=NrdI protein homologue;protein_id=CAL21271.1;transl_table=11
AL590842.1	EMBL	gene	2979500	2979736	.	-	.	ID=gene2623;Name=nrdH;gbkey=Gene;gene=nrdH;gene_biotype=protein_coding;locus_tag=YPO2651
AL590842.1	EMBL	CDS	2979500	2979736	.	-	0	ID=cds2581;Parent=gene2623;Dbxref=GOA:Q7CJT1,InterPro:IPR002109,InterPro:IPR011909,InterPro:IPR012336,UniProtKB/TrEMBL:Q7CJT1,NCBI_GP:CAL21272.1;Name=CAL21272.1;Note=Similar to Corynebacterium ammoniagenes NrdH-redoxin NrdH TR:O69271 (EMBL:Y09572) (75 aa) fasta scores: E(): 4.4e-14%2C 49.3%25 id in 75 aa%2C and to Mycobacterium tuberculosis hypothetical protein RV3053C TR:P95106 (EMBL:Z83866) (79 aa) fasta scores: E(): 2.9e-17%2C 54.7%25 id in 75 aa;gbkey=CDS;gene=nrdH;inference=similar to sequence:INSDC:Z83866;product=putative glutaredoxin;protein_id=CAL21272.1;transl_table=11
AL590842.1	EMBL	gene	2980257	2980622	.	+	.	ID=gene2624;Name=asr;gbkey=Gene;gene=asr;gene_biotype=protein_coding;locus_tag=YPO2652
AL590842.1	EMBL	CDS	2980257	2980622	.	+	0	ID=cds2582;Parent=gene2624;Dbxref=GOA:Q8ZDC4,InterPro:IPR009435,InterPro:IPR023497,NCBI_GP:CAL21273.1;Name=CAL21273.1;Note=Similar to Escherichia coli acid shock protein Asr SW:ASR_ECOLI (P36560) (111 aa) fasta scores: E(): 3e-11%2C57.5%25 id in 106 aa%2C and to C-terminal region of Chaetopterus variopedatus histone H1 TR:O18642 (EMBL:U96764) (202 aa) fasta scores: E(): 0.017%2C 37.6%25 id in 125 aa. N-terminal region similar to YPO2318 (50.5%25 identity in 95 aa overlap). Contains a degenerate repeat region between codons 60..110;gbkey=CDS;gene=asr;inference=similar to sequence:INSDC:U96764;product=putative acid shock protein;protein_id=CAL21273.1;transl_table=11
AL590842.1	EMBL	repeat_region	2980429	2980576	.	+	.	ID=id6282;Note=Degenerate repeat region containing 2.5x CAGAACAGAAAGCACAAGCAGCGAAAAAACACGAGAAAAAAGCATCAGTTCAAAAAAC A C.;gbkey=repeat_region;gene=asr
AL590842.1	EMBL	gene	2981100	2981435	.	+	.	ID=gene2625;Name=YPO2653;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2653
AL590842.1	EMBL	CDS	2981100	2981435	.	+	0	ID=cds2583;Parent=gene2625;Dbxref=InterPro:IPR018994,UniProtKB/TrEMBL:Q7CJT0,NCBI_GP:CAL21274.1;Name=CAL21274.1;Note=Similar to Escherichia coli hypothetical protein YgaC SW:YGAC_ECOLI (P36931) (114 aa) fasta scores: E(): 5.1e-24%2C 56.4%25 id in 110 aa%2C and to Lactococcus lactis hypothetical protein TR:Q9ZAG0 (EMBL:Y18267) (769 aa) fasta scores: E(): 1.1%2C 26.3%25 id in 118 aa;gbkey=CDS;inference=similar to sequence:INSDC:Y18267;product=conserved hypothetical protein;protein_id=CAL21274.1;transl_table=11
AL590842.1	EMBL	gene	2981533	2981982	.	-	.	ID=gene2626;Name=yicN;gbkey=Gene;gene=yicN;gene_biotype=protein_coding;locus_tag=YPO2654
AL590842.1	EMBL	CDS	2981533	2981982	.	-	0	ID=cds2584;Parent=gene2626;Dbxref=InterPro:IPR009587,UniProtKB/TrEMBL:Q7CJS9,NCBI_GP:CAL21275.1;Name=CAL21275.1;Note=Similar to Escherichia coli hypothetical protein YicN SW:YICN_ECOLI (P31439) (159 aa) fasta scores: E(): 3e-14%2C 32.7%25 id in 150 aa;gbkey=CDS;gene=yicN;product=putative membrane protein;protein_id=CAL21275.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2981920	2981970	.	-	.	ID=id6283;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=yicN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	repeat_region	2982277	2983591	.	+	.	ID=id6284;Note=insertion sequence:IS285;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	2982277	2982305	.	+	.	ID=id6285;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	2982348	2983556	.	+	.	ID=gene2627;Name=y1062;gbkey=Gene;gene=y1062;gene_biotype=protein_coding;gene_synonym=ypmt1.80C;locus_tag=YPO2656
AL590842.1	EMBL	CDS	2982348	2983556	.	+	0	ID=cds2585;Parent=gene2627;Dbxref=GOA:O68779,InterPro:IPR001207,UniProtKB/TrEMBL:O68779,NCBI_GP:CAL21276.1;Name=CAL21276.1;Note=Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa.;gbkey=CDS;gene=y1062;inference=similar to sequence:INSDC:AF053947;product=transposase for the IS285 insertion element;protein_id=CAL21276.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2982348	2983484	.	+	.	ID=id6286;Note=Pfam match to entry PF00872 Transpo_mutator%2CTransposase%2C Mutator family%2C score 430.40%2C E-value 1.6e-125;gbkey=misc_feature;gene=y1062;inference=protein motif:PF00872
AL590842.1	EMBL	sequence_feature	2983041	2983115	.	+	.	ID=id6287;Note=PS01007 Transposases%2C Mutator family%2C signature.;gbkey=misc_feature;gene=y1062;inference=protein motif:ProSite:PS01007
AL590842.1	EMBL	INVERTED	2983563	2983591	.	-	.	ID=id6288;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	pseudogene	2983593	2983802	.	-	.	ID=gene2628;Name=YPO2657;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO2657;pseudo=true
AL590842.1	EMBL	CDS	2983593	2983802	.	-	0	ID=cds2586;Parent=gene2628;Note=Similar to Escherichia coli plasmid (ColE1) mobilization protein MbeD SW:MBED_ECOLI (P13660) (77 aa) fasta scores: E(): 0.31%2C 28.4%25 id in 67 aa%2C and to Escherichia coli plasmid (pLG13) mobilization protein MobD TR:AAG18130 (EMBL:AF251289) (77 aa) fasta scores: E(): 0.18%2C 28.4%25 id in 67 aa. This CDS appears to be disrupted by the insertion of the downstream IS285 element. The insertion occurred near the C-terminus. It is not clear whether this insertion affects the function of the protein.;gbkey=CDS;inference=similar to sequence:INSDC:AF251289;product=putative mobilization protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	2984316	2984528	.	+	.	ID=gene2629;Name=cspB;gbkey=Gene;gene=cspB;gene_biotype=protein_coding;locus_tag=YPO2659
AL590842.1	EMBL	CDS	2984316	2984528	.	+	0	ID=cds2587;Parent=gene2629;Dbxref=GOA:P0A362,InterPro:IPR002059,InterPro:IPR011129,InterPro:IPR012156,InterPro:IPR012340,InterPro:IPR019844,NCBI_GP:CAL21278.1;Name=CAL21278.1;Note=Identical to Yersinia enterocolitica cold shock-like protein CspB SW:CSPB_YEREN (O85593) (70 aa) fasta scores: E(): 9.2e-29%2C 100.0%25 id in 70 aa. Similar to Yersinia pestis hypothetical protein TR:O34279 (EMBL:Z97978) (70 aa) fasta scores: E(): 4e-26%2C 90.0%25 id in 70 aa. Similar to YPO3644 (90.7%25 identity in 75 aa overlap)%2C YPO3643 (88.0%25 identity in 75 aa overlap)%2C YPO1746 (77.6%25 identity in 67 aa overlap)%2C YPO1655 (74.3%25 identity in 70 aa overlap)%2CYPO2595 (63.9%25 identity in 72 aa overlap)%2C YPO1398 (51.4%25 identity in 70 aa overlap) and YPO1366 (50.8%25 identity in 65 aa overlap).;gbkey=CDS;gene=cspB;inference=similar to sequence:INSDC:Z97978;product=cold shock protein;protein_id=CAL21278.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2984325	2984525	.	+	.	ID=id6289;Note=Pfam match to entry PF00313 CSD%2C 'Cold-shock' DNA-binding domain%2C score 150.00%2C E-value 4e-41;gbkey=misc_feature;gene=cspB;inference=protein motif:PF00313
AL590842.1	EMBL	sequence_feature	2984367	2984426	.	+	.	ID=id6290;Note=PS00352 'Cold-shock' DNA-binding domain signature.;gbkey=misc_feature;gene=cspB;inference=protein motif:ProSite:PS00352
AL590842.1	EMBL	repeat_region	2984638	2984791	.	+	.	ID=id6291;Note=22 x 7 bp repeats (T/C)CACCT(G/A);gbkey=repeat_region
AL590842.1	EMBL	gene	2985405	2986982	.	+	.	ID=gene2630;Name=YPO2660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2660
AL590842.1	EMBL	CDS	2985405	2986982	.	+	0	ID=cds2588;Parent=gene2630;Dbxref=GOA:Q7CJS8,InterPro:IPR000914,PDB:3RY3,PDB:4OFL,PDB:4OFO,UniProtKB/TrEMBL:Q7CJS8,NCBI_GP:CAL21279.1;Name=CAL21279.1;Note=Similar to Salmonella typhimurium anaerobically induced%2C fnr-dependent%2C putative substrate-binding protein Oxd-6A TR:O34156 (EMBL:U94729) (528 aa) fasta scores: E(): 0%2C 72.5%25 id in 517 aa%2C and to Escherichia coli hypothetical protein TR:Q05633 (EMBL:L12007) (336 aa) fasta scores: E(): 0%2C 67.0%25 id in 315 aa;gbkey=CDS;inference=similar to sequence:INSDC:U94729;product=putative solute-binding protein;protein_id=CAL21279.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2985417	2985485	.	+	.	ID=id6292;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2985645	2986757	.	+	.	ID=id6293;Note=Pfam match to entry PF00496 SBP_bac_5%2C Bacterial extracellular solute-binding proteins%2C family 5%2C score 142.10%2C E-value 7.9e-39;gbkey=misc_feature;inference=protein motif:PF00496
AL590842.1	EMBL	gene	2986979	2987950	.	+	.	ID=gene2631;Name=YPO2661;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2661
AL590842.1	EMBL	CDS	2986979	2987950	.	+	0	ID=cds2589;Parent=gene2631;Dbxref=GOA:Q0WDM8,InterPro:IPR000515,UniProtKB/TrEMBL:Q0WDM8,NCBI_GP:CAL21280.1;Name=CAL21280.1;Note=Similar to Salmonella typhimurium anaerobically induced%2C fnr-dependent%2C putative transmembrane protein Oxd-6 TR:O34157 (EMBL:U94729) (323 aa) fasta scores: E(): 0%2C 68.3%25 id in 312 aa%2C and to Streptococcus pyogenes transmembrane transport protein DppB TR:Q9ZAS5 (EMBL:U78968) (325 aa) fasta scores: E(): 0%2C 41.1%25 id in 314 aa;gbkey=CDS;inference=similar to sequence:INSDC:U94729;product=putative membrane protein;protein_id=CAL21280.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2986997	2987065	.	+	.	ID=id6294;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2987273	2987341	.	+	.	ID=id6295;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2987378	2987446	.	+	.	ID=id6296;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2987543	2987596	.	+	.	ID=id6297;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2987705	2987773	.	+	.	ID=id6298;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2987846	2987914	.	+	.	ID=id6299;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2987947	2988753	.	+	.	ID=gene2632;Name=YPO2662;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2662
AL590842.1	EMBL	CDS	2987947	2988753	.	+	0	ID=cds2590;Parent=gene2632;Dbxref=GOA:Q7CJS7,InterPro:IPR000515,UniProtKB/TrEMBL:Q7CJS7,NCBI_GP:CAL21281.1;Name=CAL21281.1;Note=Similar to Salmonella typhimurium anaerobically induced%2C fnr-dependent%2C putative transmembrane protein Oxd-6C TR:O34158 (EMBL:U94729) (270 aa) fasta scores: E(): 0%2C 61.7%25 id in 266 aa%2C and to Streptococcus pyogenes transmembrane transport protein DppC TR:Q9ZAS4 (EMBL:U78968) (274 aa) fasta scores: E(): 0%2C 40.8%25 id in 255 aa;gbkey=CDS;inference=similar to sequence:INSDC:U94729;product=binding-protein-dependent transport protein;protein_id=CAL21281.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2987971	2988039	.	+	.	ID=id6300;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2988166	2988234	.	+	.	ID=id6301;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2988271	2988330	.	+	.	ID=id6302;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2988340	2988408	.	+	.	ID=id6303;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2988403	2988633	.	+	.	ID=id6304;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 15.50%2C E-value 0.087;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	2988484	2988552	.	+	.	ID=id6305;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2988646	2988705	.	+	.	ID=id6306;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2988753	2989559	.	+	.	ID=gene2633;Name=YPO2663;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2663
AL590842.1	EMBL	CDS	2988753	2989559	.	+	0	ID=cds2591;Parent=gene2633;Dbxref=GOA:Q7CJS6,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CJS6,NCBI_GP:CAL21282.1;Name=CAL21282.1;Note=Streptococcus pyogenes dipeptide permease ATPase protein DppD TR:Q9ZAS3 (EMBL:U78968) (267 aa) fasta scores: E(): 4.4e-22%2C 34.0%25 id in 262 aa%2C and to Salmonella typhimurium anaerobically induced%2C fnr-dependent%2C putative ATPase Oxd-6D TR:O34159 (EMBL:U94729) (265 aa) fasta scores: E(): 0%2C 52.4%25 id in 252 aa;gbkey=CDS;inference=similar to sequence:INSDC:U94729;product=putative transport ATPase;protein_id=CAL21282.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2988858	2989418	.	+	.	ID=id6307;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 110.30%2C E-value 3.6e-29;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2988879	2988902	.	+	.	ID=id6308;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	2989552	2990217	.	+	.	ID=gene2634;Name=YPO2664;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2664
AL590842.1	EMBL	CDS	2989552	2990217	.	+	0	ID=cds2592;Parent=gene2634;Dbxref=GOA:Q0WDM5,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WDM5,NCBI_GP:CAL21283.1;Name=CAL21283.1;Note=Similar to Streptococcus pyogenes ATPase protein DppE dppE TR:Q9ZAS2 (EMBL:U78968) (208 aa) fasta scores: E(): 5.9e-29%2C 43.4%25 id in 189 aa%2C and to Salmonella typhimurium anaerobically induced%2C fnr-dependent%2C putative ATPase Oxd-6E TR:O34160 (EMBL:U94729) (196 aa) fasta scores: E(): 0%2C 61.8%25 id in 191 aa;gbkey=CDS;inference=similar to sequence:INSDC:U94729;product=putative transport ATPase;protein_id=CAL21283.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2989630	2990145	.	+	.	ID=id6309;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 77.10%2C E-value 3.5e-19;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	2989651	2989674	.	+	.	ID=id6310;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	2989915	2989959	.	+	.	ID=id6311;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	2991416	2991718	.	+	.	ID=gene2635;Name=ureA;gbkey=Gene;gene=ureA;gene_biotype=protein_coding;gene_synonym=yeuA;locus_tag=YPO2665
AL590842.1	EMBL	CDS	2991416	2991718	.	+	0	ID=cds2593;Parent=gene2635;Dbxref=GOA:P69994,InterPro:IPR002026,InterPro:IPR012010,NCBI_GP:CAL21284.1;Name=CAL21284.1;Note=Previously sequenced as Yersinia pestis urease gamma subunit UreA SW:URE3_YERPS (P52315) (100 aa) fasta scores: E(): 0%2C 100.0%25 id in 100 aa. Identical to the Yersinia pseudotuberculosis urease gamma subunit UreA%2C and similar to Yersinia enterocolitica urease gamma subunit UreA SW:URE3_YEREN (P31496) (100 aa) fasta scores: E(): 0%2C 99.0%25 id in 100 aa;gbkey=CDS;gene=ureA;product=urease gamma subunit;protein_id=CAL21284.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2991416	2991712	.	+	.	ID=id6312;Note=Pfam match to entry PF00547 urease_gamma%2C Urease%2Cgamma subunit%2C score 273.70%2C E-value 1.7e-83;gbkey=misc_feature;gene=ureA;inference=protein motif:PF00547
AL590842.1	EMBL	gene	2991771	2992205	.	+	.	ID=gene2636;Name=ureB;gbkey=Gene;gene=ureB;gene_biotype=protein_coding;gene_synonym=yeuB;locus_tag=YPO2666
AL590842.1	EMBL	CDS	2991771	2992205	.	+	0	ID=cds2594;Parent=gene2636;Dbxref=GOA:P69990,InterPro:IPR002019,NCBI_GP:CAL21285.1;Name=CAL21285.1;Note=Previously sequenced as Yersinia pestis urease beta subunit UreB SW:URE2_YERPS (P52314) (144 aa) fasta scores: E(): 0%2C 100.0%25 id in 144 aa. Identical to the Yersinia pseudotuberculosis urease gamma subunit UreB%2C and similar to Yersinia enterocolitica urease beta subunit UreB SW:URE2_YEREN (P31495) (163 aa) fasta scores: E(): 0%2C 90.7%25 id in 140 aa;gbkey=CDS;gene=ureB;product=urease beta subunit;protein_id=CAL21285.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2991858	2992067	.	+	.	ID=id6313;Note=Pfam match to entry PF00699 Urease_beta%2C Urease beta subunit.%2C score 174.60%2C E-value 1.6e-48;gbkey=misc_feature;gene=ureB;inference=protein motif:PF00699
AL590842.1	EMBL	gene	2992295	2994013	.	+	.	ID=gene2637;Name=ureC;gbkey=Gene;gene=ureC;gene_biotype=protein_coding;gene_synonym=yeuC;locus_tag=YPO2667
AL590842.1	EMBL	CDS	2992295	2994013	.	+	0	ID=cds2595;Parent=gene2637;Dbxref=GOA:Q9ZFR9,InterPro:IPR005848,InterPro:IPR006680,InterPro:IPR011059,InterPro:IPR011612,InterPro:IPR017950,InterPro:IPR017951,InterPro:IPR029754,NCBI_GP:CAL21286.1;Name=CAL21286.1;Note=Previously sequenced as Yersinia pestis urease alpha subunit UreC SW:URE1_YERPE (Q9ZFR9) (571 aa) fasta scores: E(): 0%2C 100.0%25 id in 571 aa. Similar to Yersinia pseudotuberculosis urease alpha subunit ureC SW:URE1_YERPS (P52313) (571 aa) fasta scores: E(): 0%2C 99.8%25 id in 571 aa%2Cand to Yersinia enterocolitica urease alpha subunit UreC SW:URE1_YEREN (P31494) (571 aa) fasta scores: E(): 0%2C 97.2%25 id in 571 aa;gbkey=CDS;gene=ureC;product=urease alpha subunit;protein_id=CAL21286.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2992295	2994010	.	+	.	ID=id6314;Note=Pfam match to entry PF00449 urease%2C Urease%2C score 1450.90%2C E-value 0;gbkey=misc_feature;gene=ureC;inference=protein motif:PF00449
AL590842.1	EMBL	sequence_feature	2992688	2992729	.	+	.	ID=id6315;Note=PS01120 Urease nickel ligands signature.;gbkey=misc_feature;gene=ureC;inference=protein motif:ProSite:PS01120
AL590842.1	EMBL	sequence_feature	2993258	2993308	.	+	.	ID=id6316;Note=PS00145 Urease active site.;gbkey=misc_feature;gene=ureC;inference=protein motif:ProSite:PS00145
AL590842.1	EMBL	gene	2994309	2995004	.	+	.	ID=gene2638;Name=ureE;gbkey=Gene;gene=ureE;gene_biotype=protein_coding;locus_tag=YPO2668
AL590842.1	EMBL	CDS	2994309	2995004	.	+	0	ID=cds2596;Parent=gene2638;Dbxref=GOA:Q9ZFR8,InterPro:IPR004029,InterPro:IPR007864,InterPro:IPR012406,NCBI_GP:CAL21287.1;Name=CAL21287.1;Note=Previously sequenced as to Yersinia pestis urease accessory protein UreE SW:UREE_YERPE (Q9ZFR8) (231 aa) fasta scores: E(): 0%2C 100.0%25 id in 231 aa. Similar to Yersinia pseudotuberculosis urease accessory protein UreE TR:AAA87855 (EMBL:U40842) (231 aa) fasta scores: E(): 0%2C99.6%25 id in 231 aa%2C and to Yersinia enterocolitica urease accessory protein UreE SW:UREE_YEREN (P42869) (263 aa) fasta scores: E(): 0%2C 93.9%25 id in 231 aa;gbkey=CDS;gene=ureE;inference=similar to sequence:INSDC:U40842;product=urease accessory protein;protein_id=CAL21287.1;transl_table=11
AL590842.1	EMBL	gene	2995026	2995712	.	+	.	ID=gene2639;Name=ureF;gbkey=Gene;gene=ureF;gene_biotype=protein_coding;locus_tag=YPO2669
AL590842.1	EMBL	CDS	2995026	2995712	.	+	0	ID=cds2597;Parent=gene2639;Dbxref=GOA:Q9ZFR7,InterPro:IPR002639,NCBI_GP:CAL21288.1;Name=CAL21288.1;Note=Previously sequenced as Yersinia pestis urease accessory protein UreF SW:UREF_YERPE (Q9ZFR7) (228 aa) fasta scores: E(): 0%2C 99.6%25 id in 228 aa. Divergence between the two sequences at codon 70. Similar to Yersinia pseudotuberculosis urease accessory protein UreF TR:AAA87856 (EMBL:U40842) (228 aa) fasta scores: E(): 0%2C99.6%25 id in 228 aa%2C and to Yersinia enterocolitica urease accessory protein UreF SW:UREF_YEREN (P42870) (228 aa) fasta scores: E(): 0%2C 97.8%25 id in 228 aa;gbkey=CDS;gene=ureF;inference=similar to sequence:INSDC:U40842;product=urease accessory protein;protein_id=CAL21288.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2995131	2995589	.	+	.	ID=id6317;Note=Pfam match to entry PF01730 UreF%2C UreF%2C score 232.30%2C E-value 6.9e-66;gbkey=misc_feature;gene=ureF;inference=protein motif:PF01730
AL590842.1	EMBL	gene	2995839	2996501	.	+	.	ID=gene2640;Name=ureG;gbkey=Gene;gene=ureG;gene_biotype=protein_coding;locus_tag=YPO2670
AL590842.1	EMBL	CDS	2995839	2996501	.	+	0	ID=cds2598;Parent=gene2640;Dbxref=GOA:P69992,InterPro:IPR003495,InterPro:IPR004400,InterPro:IPR012202,InterPro:IPR027417,NCBI_GP:CAL21289.1;Name=CAL21289.1;Note=Previously sequenced as Yersinia pestis urease accessory protein UreG SW:UREG_YERPS (P52319) (220 aa) fasta scores: E(): 0%2C 99.5%25 id in 220 aa. Divergence between the two sequences at codon 1. Similar to Yersinia enterocolitica urease accessory protein UreG SW:UREG_YEREN (P42871) (221 aa) fasta scores: E(): 0%2C 96.3%25 id in 219 aa;gbkey=CDS;gene=ureG;product=urease accessory protein;protein_id=CAL21289.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2995869	2996261	.	+	.	ID=id6318;Note=Pfam match to entry PF01495 HypB_UreG%2C HypB/UreG nucleotide-binding domain%2C score 239.10%2C E-value 6.1e-68;gbkey=misc_feature;gene=ureG;inference=protein motif:PF01495
AL590842.1	EMBL	sequence_feature	2995890	2995913	.	+	.	ID=id6319;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ureG;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	pseudogene	2996498	2997461	.	+	.	ID=gene2641;Name=ureD;gbkey=Gene;gene=ureD;gene_biotype=pseudogene;locus_tag=YPO2671;pseudo=true
AL590842.1	EMBL	CDS	2996498	2997461	.	+	0	ID=cds2599;Parent=gene2641;Note=Majority of the CDS has previously been sequenced as Yersinia pestis urease accessory protein%2C UreD SW:URED_YERPE (Q9ZFR5) (277 aa) fasta scores: E(): 0%2C100.0%25 id in 268 aa. Similar to Yersinia pseudotuberculosis urease accessory protein UreD TR:AAA87858 (EMBL:U40842) (321 aa) fasta scores: E(): 0%2C 99.7%25 id in 321 aa. Contains a frameshift after codon 268. Frame shift occurs at a poly G heptamer. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=ureD;inference=similar to sequence:INSDC:U40842;product=urease accessory protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	2996753	2996785	.	+	.	ID=id6320;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=ureD;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	2996756	2997289	.	+	.	ID=id6321;Note=Pfam match to entry PF01774 UreD%2C UreD urease accessory protein%2C score 266.50%2C E-value 3.4e-76;gbkey=misc_feature;gene=ureD;inference=protein motif:PF01774
AL590842.1	EMBL	gene	2997656	2998648	.	+	.	ID=gene2642;Name=YPO2672;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2672
AL590842.1	EMBL	CDS	2997656	2998648	.	+	0	ID=cds2600;Parent=gene2642;Dbxref=GOA:Q7CJS5,InterPro:IPR004937,InterPro:IPR017807,InterPro:IPR029020,UniProtKB/TrEMBL:Q7CJS5,NCBI_GP:CAL21291.1;Name=CAL21291.1;Note=Similar to internal regions of Squalus acanthias urea transporter ShUT TR:Q9I9F0 (EMBL:AF257331) (380 aa) fasta scores: E(): 3.1e-22%2C 28.4%25 id in 313 aa%2C and to Mus musculus urea transporter isoform UTA-3 TR:AAG32168 (EMBL:AF258602) (461 aa) fasta scores: E(): 3.6e-22%2C 29.2%25 id in 315 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF258602;product=putative urea transporter;protein_id=CAL21291.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2997755	2997823	.	+	.	ID=id6322;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2997836	2997895	.	+	.	ID=id6323;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2997920	2997979	.	+	.	ID=id6324;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2997989	2998057	.	+	.	ID=id6325;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2998070	2998138	.	+	.	ID=id6326;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2998235	2998303	.	+	.	ID=id6327;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2998322	2998381	.	+	.	ID=id6328;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2998394	2998462	.	+	.	ID=id6329;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2998481	2998534	.	+	.	ID=id6330;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2998544	2998612	.	+	.	ID=id6331;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	2998797	2999855	.	+	.	ID=gene2643;Name=YPO2673;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2673
AL590842.1	EMBL	CDS	2998797	2999855	.	+	0	ID=cds2601;Parent=gene2643;Dbxref=GOA:Q0WDL7,InterPro:IPR004688,InterPro:IPR011541,UniProtKB/TrEMBL:Q0WDL7,NCBI_GP:CAL21292.1;Name=CAL21292.1;Note=Similar to Alcaligenes eutrophus high-affinity nickel transport protein HoxN TR:AAA69017 (EMBL:M58599) (351 aa) fasta scores: E(): 0%2C 55.2%25 id in 330 aa%2C and to Salmonella enterica NxiA TR:AAG31202 (EMBL:AF020810) (337 aa) fasta scores: E(): 0%2C 60.1%25 id in 341 aa;gbkey=CDS;inference=similar to sequence:INSDC:M58599;product=putative nickel transport protein;protein_id=CAL21292.1;transl_table=11
AL590842.1	EMBL	sequence_feature	2998854	2998922	.	+	.	ID=id6332;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2998932	2998991	.	+	.	ID=id6333;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2999052	2999120	.	+	.	ID=id6334;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2999178	2999246	.	+	.	ID=id6335;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2999382	2999450	.	+	.	ID=id6336;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2999478	2999546	.	+	.	ID=id6337;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2999607	2999675	.	+	.	ID=id6338;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	2999754	2999822	.	+	.	ID=id6339;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3000024	3000353	.	-	.	ID=gene2644;Name=YPO2674;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2674
AL590842.1	EMBL	CDS	3000024	3000353	.	-	0	ID=cds2602;Parent=gene2644;Dbxref=GOA:Q7CJS4,InterPro:IPR010486,InterPro:IPR024972,InterPro:IPR028623,UniProtKB/TrEMBL:Q7CJS4,NCBI_GP:CAL21293.1;Name=CAL21293.1;Note=Similar to Escherichia coli hypothetical protein HdeB SW:HDEB_ECOLI (P26605) (108 aa) fasta scores: E(): 7.1e-13%2C 43.9%25 id in 107 aa%2C and to Escherichia coli protein hypothetical protein HdeA SW:HDEA_ECOLI (P26604) (110 aa) fasta scores: E(): 4%2C 28.6%25 id in 98 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL21293.1;transl_table=11
AL590842.1	EMBL	gene	3000971	3002146	.	+	.	ID=gene2645;Name=YPO2675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2675
AL590842.1	EMBL	CDS	3000971	3002146	.	+	0	ID=cds2603;Parent=gene2645;Dbxref=GOA:Q7CJS3,InterPro:IPR003148,InterPro:IPR013099,InterPro:IPR016040,UniProtKB/TrEMBL:Q7CJS3,NCBI_GP:CAL21294.1;Name=CAL21294.1;Note=Similar to Escherichia coli putative potassium channel protein Kch SW:KCH_ECOLI (P31069) (417 aa) fasta scores: E(): 0%2C 38.5%25 id in 384 aa%2C and to Halobacterium sp potassium channel homolog PchA TR:AAG20054 (EMBL:AE005085) (411 aa) fasta scores: E(): 4e-18%2C 25.6%25 id in 316 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE005085;product=putative potassium channel protein;protein_id=CAL21294.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3001004	3001072	.	+	.	ID=id6340;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3001136	3001204	.	+	.	ID=id6341;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3001223	3001282	.	+	.	ID=id6342;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3001295	3001348	.	+	.	ID=id6343;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3001361	3001429	.	+	.	ID=id6344;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3001457	3001525	.	+	.	ID=id6345;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3001562	3001630	.	+	.	ID=id6346;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3001694	3002041	.	+	.	ID=id6347;Note=Pfam match to entry PF02254 KTN%2C KTN NAD-binding domain%2C score 40.00%2C E-value 5.4e-08;gbkey=misc_feature;inference=protein motif:PF02254
AL590842.1	EMBL	gene	3002244	3002648	.	-	.	ID=gene2646;Name=YPO2676;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2676
AL590842.1	EMBL	CDS	3002244	3002648	.	-	0	ID=cds2604;Parent=gene2646;Dbxref=GOA:Q8ZDB2,InterPro:IPR003691,NCBI_GP:CAL21295.1;Name=CAL21295.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein RV3069 TR:P95089 (EMBL:Z83866) (132 aa) fasta scores: E(): 5.9e-08%2C 33.3%25 id in 126 aa%2C and to Pyrococcus abyssi hypothetical protein protein PAB1925 TR:Q9V0X2 (EMBL:AJ248285) (123 aa) fasta scores: E(): 1.4e-07%2C 32.8%25 id in 116 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z83866;product=putative membrane protein;protein_id=CAL21295.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3002295	3002360	.	-	.	ID=id6348;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3002391	3002456	.	-	.	ID=id6349;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3002484	3002549	.	-	.	ID=id6350;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3002580	3002633	.	-	.	ID=id6351;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3002664	3003044	.	-	.	ID=gene2647;Name=YPO2677;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2677
AL590842.1	EMBL	CDS	3002664	3003044	.	-	0	ID=cds2605;Parent=gene2647;Dbxref=GOA:Q8ZDB1,InterPro:IPR003691,NCBI_GP:CAL21296.1;Name=CAL21296.1;Note=Similar to Helicobacter pylori conserved hypothetical integral membrane protein HP1225 TR:O25823 (EMBL:AE000628) (130 aa) fasta scores: E(): 1.4e-11%2C 40.5%25 id in 121 aa%2C and to Mycobacterium tuberculosis hypothetical protein RV3070 TR:P95088 (EMBL:Z83866) (126 aa) fasta scores: E(): 5.7e-11%2C 38.5%25 id in 130 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z83866;product=putative membrane protein;protein_id=CAL21296.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3002673	3002738	.	-	.	ID=id6352;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3002784	3002840	.	-	.	ID=id6353;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3002862	3002927	.	-	.	ID=id6354;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3002973	3003023	.	-	.	ID=id6355;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3004085	3004402	.	+	.	ID=gene2648;Name=celA;gbkey=Gene;gene=celA;gene_biotype=protein_coding;locus_tag=YPO2678
AL590842.1	EMBL	CDS	3004085	3004402	.	+	0	ID=cds2606;Parent=gene2648;Dbxref=GOA:Q0WDL2,InterPro:IPR003501,InterPro:IPR013012,UniProtKB/TrEMBL:Q0WDL2,NCBI_GP:CAL21297.1;Name=CAL21297.1;Note=Similar to Escherichia coli PTS system%2Ccellobiose-specific IIB component CelA SW:PTCB_ECOLI (P17409) (106 aa) fasta scores: E(): 2.6e-32%2C 82.5%25 id in 103 aa%2C and to Aeromonas hydrophila PTS system%2Ccellobiose-specific IIB component CelA SW:PTCB_AERHY (P55901) (88 aa) fasta scores: E(): 1.4e-26%2C 80.7%25 id in 88 aa;gbkey=CDS;gene=celA;product=PTS system%2C cellobiose-specific IIB component;protein_id=CAL21297.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3004094	3004363	.	+	.	ID=id6356;Note=Pfam match to entry PF02302 PTS_IIB%2C PTS system%2CLactose/Cellobiose specific IIB subunit%2C score 166.60%2CE-value 4.1e-46;gbkey=misc_feature;gene=celA;inference=protein motif:PF02302
AL590842.1	EMBL	gene	3004413	3005774	.	+	.	ID=gene2649;Name=celB;gbkey=Gene;gene=celB;gene_biotype=protein_coding;locus_tag=YPO2679
AL590842.1	EMBL	CDS	3004413	3005774	.	+	0	ID=cds2607;Parent=gene2649;Dbxref=GOA:Q7CJS1,InterPro:IPR003352,InterPro:IPR004501,InterPro:IPR004796,UniProtKB/TrEMBL:Q7CJS1,NCBI_GP:CAL21298.1;Name=CAL21298.1;Note=Similar to Escherichia coli PTS system%2Ccellobiose-specific IIC component CelB SW:PTCC_ECOLI (P17334) (452 aa) fasta scores: E(): 0%2C 79.0%25 id in 453 aa%2Cand to Bacillus stearothermophilus PTS system%2Ccellobiose-specific iIIC component CelB SW:PTCC_BACST (Q45400) (451 aa) fasta scores: E(): 0%2C 32.0%25 id in 466 aa;gbkey=CDS;gene=celB;inference=protein motif:TMHMM:2.0;product=PTS system%2C cellobiose-specific IIC component;protein_id=CAL21298.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3004536	3004604	.	+	.	ID=id6357;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=celB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3004578	3005477	.	+	.	ID=id6358;Note=Pfam match to entry PF02378 PTS_EIIC%2C %2C score 91.00%2CE-value 2.4e-23;gbkey=misc_feature;gene=celB;inference=protein motif:PF02378
AL590842.1	EMBL	sequence_feature	3004665	3004733	.	+	.	ID=id6359;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=celB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3004761	3004829	.	+	.	ID=id6360;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=celB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3004842	3004910	.	+	.	ID=id6361;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=celB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3004977	3005045	.	+	.	ID=id6362;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=celB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3005106	3005174	.	+	.	ID=id6363;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=celB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3005301	3005369	.	+	.	ID=id6364;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=celB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3005508	3005576	.	+	.	ID=id6365;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=celB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3005634	3005702	.	+	.	ID=id6366;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=celB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3005941	3006288	.	+	.	ID=gene2650;Name=celC;gbkey=Gene;gene=celC;gene_biotype=protein_coding;locus_tag=YPO2680
AL590842.1	EMBL	CDS	3005941	3006288	.	+	0	ID=cds2608;Parent=gene2650;Dbxref=GOA:Q7CJS0,InterPro:IPR003188,UniProtKB/TrEMBL:Q7CJS0,NCBI_GP:CAL21299.1;Name=CAL21299.1;Note=Similar to Escherichia coli PTS system%2Ccellobiose-specific IIA component CelC SW:PTCA_ECOLI (P17335) (116 aa) fasta scores: E(): 2.8e-29%2C 72.2%25 id in 115 aa%2C and to Vibrio cholerae PTS system%2Ccellobiose-specific IIA component VC1283 TR:Q9KSH3 (EMBL:AE004207) (111 aa) fasta scores: E(): 4.6e-19%2C 57.7%25 id in 97 aa;gbkey=CDS;gene=celC;inference=similar to sequence:INSDC:AE004207;product=PTS system%2C cellobiose-specific IIA component;protein_id=CAL21299.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3005992	3006279	.	+	.	ID=id6367;Note=Pfam match to entry PF02255 PTS_IIA%2C PTS system%2CLactose/Cellobiose specific IIA subunit%2C score 171.40%2CE-value 1.5e-47;gbkey=misc_feature;gene=celC;inference=protein motif:PF02255
AL590842.1	EMBL	sequence_feature	3006160	3006183	.	+	.	ID=id6368;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=celC;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3006325	3007167	.	+	.	ID=gene2651;Name=celD;gbkey=Gene;gene=celD;gene_biotype=protein_coding;locus_tag=YPO2681
AL590842.1	EMBL	CDS	3006325	3007167	.	+	0	ID=cds2609;Parent=gene2651;Dbxref=GOA:Q7CJR9,InterPro:IPR009057,InterPro:IPR011051,InterPro:IPR013096,InterPro:IPR014710,InterPro:IPR018060,InterPro:IPR018062,InterPro:IPR020449,UniProtKB/TrEMBL:Q7CJR9,NCBI_GP:CAL21300.1;Name=CAL21300.1;Note=Similar to Escherichia coli cel operon repressor CelD SW:CELD_ECOLI (P17410) (280 aa) fasta scores: E(): 0%2C67.9%25 id in 271 aa%2C and to Bacillus subtilis probable transcriptional regulator YbfI TR:O31449 (EMBL:Z99105) (275 aa) fasta scores: E(): 4.3e-06%2C 27.1%25 id in 251 aa;gbkey=CDS;gene=celD;inference=similar to sequence:INSDC:Z99105;product=cel operon repressor;protein_id=CAL21300.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3006877	3007137	.	+	.	ID=id6369;Note=Pfam match to entry PF00165 HTH_AraC%2C Bacterial regulatory helix-turn-helix proteins%2C araC family%2C score 84.60%2C E-value 2.1e-21;gbkey=misc_feature;gene=celD;inference=protein motif:PF00165
AL590842.1	EMBL	sequence_feature	3006988	3007116	.	+	.	ID=id6370;Note=PS00041 Bacterial regulatory proteins%2C araC family signature.;gbkey=misc_feature;gene=celD;inference=protein motif:ProSite:PS00041
AL590842.1	EMBL	gene	3007219	3007980	.	+	.	ID=gene2652;Name=YPO2682;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2682
AL590842.1	EMBL	CDS	3007219	3007980	.	+	0	ID=cds2610;Parent=gene2652;Dbxref=GOA:Q8ZDA6,InterPro:IPR002509,InterPro:IPR006879,InterPro:IPR011330,InterPro:IPR022948,NCBI_GP:CAL21301.1;Name=CAL21301.1;Note=Similar to Escherichia coli hypothetical protein YdjC SW:YDJC_ECOLI (P37794) (249 aa) fasta scores: E(): 0%2C60.9%25 id in 253 aa%2C and to Bacillus halodurans hypothetical protein BH0913 TR:Q9KED9 (EMBL:AP001510) (237 aa) fasta scores: E(): 6.1e-28%2C 39.9%25 id in 233 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001510;product=conserved hypothetical protein;protein_id=CAL21301.1;transl_table=11
AL590842.1	EMBL	gene	3007987	3008163	.	-	.	ID=gene2653;Name=YPO2683;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2683
AL590842.1	EMBL	CDS	3007987	3008163	.	-	0	ID=cds2611;Parent=gene2653;Dbxref=UniProtKB/TrEMBL:Q74ST8,NCBI_GP:CAL21302.1;Name=CAL21302.1;Note=no significant database hits to the full length CDS;gbkey=CDS;product=hypothetical protein;protein_id=CAL21302.1;transl_table=11
AL590842.1	EMBL	gene	3008275	3008643	.	-	.	ID=gene2654;Name=YPO2684;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2684
AL590842.1	EMBL	CDS	3008275	3008643	.	-	0	ID=cds2612;Parent=gene2654;Dbxref=InterPro:IPR009739,UniProtKB/TrEMBL:Q7CJR8,NCBI_GP:CAL21303.1;Name=CAL21303.1;Note=Poor database matches%2C similar to Pseudomonas aeruginosa hypothetical protein PA1114 TR:AAG04503 (EMBL:AE004541) (111 aa) fasta scores: E(): 0.014%2C 30.4%25 id in 102 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004541;product=putative exported protein;protein_id=CAL21303.1;transl_table=11
AL590842.1	EMBL	gene	3009138	3009665	.	+	.	ID=gene2655;Name=seqA;gbkey=Gene;gene=seqA;gene_biotype=protein_coding;locus_tag=YPO2685
AL590842.1	EMBL	CDS	3009138	3009665	.	+	0	ID=cds2613;Parent=gene2655;Dbxref=GOA:Q0WDK5,InterPro:IPR005621,InterPro:IPR010985,InterPro:IPR013321,InterPro:IPR026577,UniProtKB/TrEMBL:Q0WDK5,NCBI_GP:CAL21304.1;Name=CAL21304.1;Note=Similar to Escherichia coli negative regulator of replication initiation SeqA SW:SEQA_ECOLI (P36658) (181 aa) fasta scores: E(): 0%2C 73.1%25 id in 182 aa%2C and to Vibrio cholerae negative regulator of replication initiation SeqA TR:Q9KQA4 (EMBL:AE004283) (177 aa) fasta scores: E(): 1.7e-31%2C 52.8%25 id in 180 aa;gbkey=CDS;gene=seqA;inference=similar to sequence:INSDC:AE004283;product=putative negative regulator of replication initiation;protein_id=CAL21304.1;transl_table=11
AL590842.1	EMBL	gene	3009738	3011381	.	+	.	ID=gene2656;Name=pgm;gbkey=Gene;gene=pgm;gene_biotype=protein_coding;locus_tag=YPO2686
AL590842.1	EMBL	CDS	3009738	3011381	.	+	0	ID=cds2614;Parent=gene2656;Dbxref=GOA:Q0WDK4,InterPro:IPR005843,InterPro:IPR005844,InterPro:IPR005845,InterPro:IPR005846,InterPro:IPR005852,InterPro:IPR016055,InterPro:IPR016066,UniProtKB/TrEMBL:Q0WDK4,NCBI_GP:CAL21305.1;Name=CAL21305.1;Note=Similar to Escherichia coli phosphoglucomutase Pgm SW:PGMU_ECOLI (P36938) (546 aa) fasta scores: E(): 0%2C 82.8%25 id in 546 aa%2C and to Vibrio cholerae phosphoglucomutase VC2095 TR:Q9KQA5 (EMBL:AE004283) (548 aa) fasta scores: E(): 0%2C 69.6%25 id in 546 aa;gbkey=CDS;gene=pgm;inference=similar to sequence:INSDC:AE004283;product=phosphoglucomutase;protein_id=CAL21305.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3009849	3011285	.	+	.	ID=id6371;Note=Pfam match to entry PF00408 PGM_PMM%2CPhosphoglucomutase/phosphomannomutase%2C score 377.70%2CE-value 1.2e-109;gbkey=misc_feature;gene=pgm;inference=protein motif:PF00408
AL590842.1	EMBL	sequence_feature	3010155	3010199	.	+	.	ID=id6372;Note=PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature.;gbkey=misc_feature;gene=pgm;inference=protein motif:ProSite:PS00710
AL590842.1	EMBL	sequence_feature	3010758	3010781	.	+	.	ID=id6373;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=pgm;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3012125	3012553	.	-	.	ID=gene2657;Name=YPO2687;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2687
AL590842.1	EMBL	CDS	3012125	3012553	.	-	0	ID=cds2615;Parent=gene2657;Dbxref=GOA:Q7CJR7,InterPro:IPR000620,UniProtKB/TrEMBL:Q7CJR7,NCBI_GP:CAL21306.1;Name=CAL21306.1;Note=Similar to Pyrococcus abyssi hypothetical protein PAB0665 TR:Q9V003 (EMBL:AJ248286) (137 aa) fasta scores: E(): 3.4e-23%2C 51.8%25 id in 141 aa%2C and to Pyrococcus horikoshii hypothetical protein PH1270 TR:O58983 (EMBL:AP000005) (140 aa) fasta scores: E(): 2.4e-21%2C 49.3%25 id in 142 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP000005;product=putative membrane protein;protein_id=CAL21306.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3012131	3012517	.	-	.	ID=id6374;Note=Pfam match to entry PF00892 DUF6%2C Integral membrane protein DUF6%2C score 78.40%2C E-value 1.5e-19;gbkey=misc_feature;inference=protein motif:PF00892
AL590842.1	EMBL	sequence_feature	3012131	3012187	.	-	.	ID=id6375;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3012203	3012268	.	-	.	ID=id6376;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3012284	3012349	.	-	.	ID=id6377;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3012371	3012436	.	-	.	ID=id6378;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3012467	3012532	.	-	.	ID=id6379;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3012648	3013277	.	-	.	ID=gene2658;Name=kdpE;gbkey=Gene;gene=kdpE;gene_biotype=protein_coding;locus_tag=YPO2688
AL590842.1	EMBL	CDS	3012648	3013277	.	-	0	ID=cds2616;Parent=gene2658;Dbxref=GOA:Q7CJR6,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CJR6,NCBI_GP:CAL21307.1;Name=CAL21307.1;Note=Similar to Escherichia coli kdp operon transcriptional regulatory protein KdpE SW:KDPE_ECOLI (P21866) (225 aa) fasta scores: E(): 0%2C 75.0%25 id in 208 aa%2Cand to Pseudomonas aeruginosa two-component response regulator KdpE TR:AAG05026 (EMBL:AE004591) (230 aa) fasta scores: E(): 0%2C 51.7%25 id in 209 aa. CDS is truncated at the N-terminus in comparison to other orthologues. Upstream inframe amino acids are similar to the N-terminus of orthologues%2C but there is no translational start;gbkey=CDS;gene=kdpE;inference=similar to sequence:INSDC:AE004591;product=two-component regulatory protein response regulator KdpE;protein_id=CAL21307.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3012666	3012884	.	-	.	ID=id6380;Note=Pfam match to entry PF00486 trans_reg_C%2CTranscriptional regulatory protein%2C C terminal%2C score 108.00%2C E-value 5.1e-31;gbkey=misc_feature;gene=kdpE;inference=protein motif:PF00486
AL590842.1	EMBL	sequence_feature	3012990	3013277	.	-	.	ID=id6381;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 91.10%2C E-value 2.2e-23;gbkey=misc_feature;gene=kdpE;inference=protein motif:PF00072
AL590842.1	EMBL	gene	3013570	3016296	.	-	.	ID=gene2659;Name=kdpD;gbkey=Gene;gene=kdpD;gene_biotype=protein_coding;locus_tag=YPO2689
AL590842.1	EMBL	CDS	3013570	3016296	.	-	0	ID=cds2617;Parent=gene2659;Dbxref=GOA:Q7CJR5,InterPro:IPR003018,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR003852,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR006016,InterPro:IPR009082,InterPro:IPR014729,InterPro:IPR025201,InterPro:IPR027417,InterPro:IPR029016,UniProtKB/TrEMBL:Q7CJR5,NCBI_GP:CAL21308.1;Name=CAL21308.1;Note=Similar to Escherichia coli sensor protein KdpD SW:KDPD_ECOLI (P21865) (894 aa) fasta scores: E(): 0%2C 71.2%25 id in 891 aa%2C and to Clostridium acetobutylicum sensor protein KdpD SW:KDPD_CLOAB (P94608) (900 aa) fasta scores: E(): 0%2C 36.1%25 id in 914 aa;gbkey=CDS;gene=kdpD;inference=protein motif:TMHMM:2.0;product=two-component regulatory protein sensor kinase KdpD;protein_id=CAL21308.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3013648	3014274	.	-	.	ID=id6382;Note=Pfam match to entry PF00512 signal%2C Histidine kinase%2C score 204.30%2C E-value 1.9e-57;gbkey=misc_feature;gene=kdpD;inference=protein motif:PF00512
AL590842.1	EMBL	sequence_feature	3013852	3013890	.	-	.	ID=id6383;Note=PS00213 Lipocalin signature.;gbkey=misc_feature;gene=kdpD;inference=protein motif:ProSite:PS00213
AL590842.1	EMBL	sequence_feature	3014800	3014865	.	-	.	ID=id6384;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=kdpD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3014932	3014997	.	-	.	ID=id6385;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=kdpD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3015037	3015102	.	-	.	ID=id6386;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=kdpD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3016180	3016203	.	-	.	ID=id6387;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=kdpD;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3016306	3016908	.	-	.	ID=gene2660;Name=kdpC;gbkey=Gene;gene=kdpC;gene_biotype=protein_coding;locus_tag=YPO2690
AL590842.1	EMBL	CDS	3016306	3016908	.	-	0	ID=cds2618;Parent=gene2660;Dbxref=GOA:Q8ZD98,InterPro:IPR003820,NCBI_GP:CAL21309.1;Name=CAL21309.1;Note=Similar to Escherichia coli potassium-transporting ATPase C chain KdpC SW:ATKC_ECOLI (P03961) (190 aa) fasta scores: E(): 1.2e-32%2C 57.0%25 id in 186 aa%2C and to Mycobacterium tuberculosis potassium-transporting ATPase C chain KdpC SW:ATKC_MYCTU (P96369) (189 aa) fasta scores: E(): 8.1e-24%2C 47.3%25 id in 184 aa;gbkey=CDS;gene=kdpC;product=putative potassium-transporting ATPase C chain;protein_id=CAL21309.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3016831	3016896	.	-	.	ID=id6388;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=kdpC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3017120	3019186	.	-	.	ID=gene2661;Name=kdpB;gbkey=Gene;gene=kdpB;gene_biotype=protein_coding;locus_tag=YPO2691
AL590842.1	EMBL	CDS	3017120	3019186	.	-	0	ID=cds2619;Parent=gene2661;Dbxref=GOA:Q8ZD97,InterPro:IPR001757,InterPro:IPR006391,InterPro:IPR008250,InterPro:IPR018303,InterPro:IPR023214,InterPro:IPR023299,NCBI_GP:CAL21310.1;Name=CAL21310.1;Note=Similar to Escherichia coli potassium-transporting ATPase B chain KdpB SW:ATKB_ECOLI (P03960) (682 aa) fasta scores: E(): 0%2C 82.5%25 id in 687 aa%2C and to Streptomyces coelicolor potassium-transporting ATPase B chain KdpB TR:Q9X8Z9 (EMBL:AL078610) (707 aa) fasta scores: E(): 0%2C65.5%25 id in 681 aa;gbkey=CDS;gene=kdpB;inference=similar to sequence:INSDC:AL078610;product=putative potassium-transporting ATPase B chain;protein_id=CAL21310.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3017141	3017206	.	-	.	ID=id6389;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=kdpB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3017267	3017323	.	-	.	ID=id6390;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=kdpB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3017369	3017434	.	-	.	ID=id6391;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=kdpB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3018230	3018250	.	-	.	ID=id6392;Note=PS00154 E1-E2 ATPases phosphorylation site.;gbkey=misc_feature;gene=kdpB;inference=protein motif:ProSite:PS00154
AL590842.1	EMBL	sequence_feature	3018278	3018976	.	-	.	ID=id6393;Note=Pfam match to entry PF00122 E1-E2_ATPase%2C E1-E2 ATPase%2C score 187.20%2C E-value 1e-55;gbkey=misc_feature;gene=kdpB;inference=protein motif:PF00122
AL590842.1	EMBL	sequence_feature	3018353	3018418	.	-	.	ID=id6394;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=kdpB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3018464	3018529	.	-	.	ID=id6395;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=kdpB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3018929	3018994	.	-	.	ID=id6396;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=kdpB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3019025	3019081	.	-	.	ID=id6397;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=kdpB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3019280	3020968	.	-	.	ID=gene2662;Name=kdpA;gbkey=Gene;gene=kdpA;gene_biotype=protein_coding;locus_tag=YPO2692
AL590842.1	EMBL	CDS	3019280	3020968	.	-	0	ID=cds2620;Parent=gene2662;Dbxref=GOA:Q8ZD96,InterPro:IPR004623,NCBI_GP:CAL21311.1;Name=CAL21311.1;Note=Similar to Escherichia coli potassium-transporting ATPase A chain KdpA SW:ATKA_ECOLI (P03959) (557 aa) fasta scores: E(): 0%2C 74.8%25 id in 556 aa%2C and to Mycobacterium tuberculosis potassium-transporting ATPase A chain KdpA SW:ATKA_MYCTU (P96371) (571 aa) fasta scores: E(): 0%2C 50.4%25 id in 568 aa;gbkey=CDS;gene=kdpA;inference=protein motif:TMHMM:2.0;product=putative potassium-transporting ATPase A chain;protein_id=CAL21311.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3019337	3019402	.	-	.	ID=id6398;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kdpA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3019442	3019507	.	-	.	ID=id6399;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kdpA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3019646	3019711	.	-	.	ID=id6400;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kdpA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3019772	3019828	.	-	.	ID=id6401;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kdpA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3019841	3019906	.	-	.	ID=id6402;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kdpA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3019922	3019987	.	-	.	ID=id6403;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kdpA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3020057	3020122	.	-	.	ID=id6404;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kdpA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3020144	3020209	.	-	.	ID=id6405;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kdpA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3020384	3020449	.	-	.	ID=id6406;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kdpA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3020513	3020578	.	-	.	ID=id6407;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kdpA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3020717	3020782	.	-	.	ID=id6408;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kdpA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3020888	3020953	.	-	.	ID=id6409;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=kdpA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3021463	3021669	.	+	.	ID=gene2663;Name=ybfA;gbkey=Gene;gene=ybfA;gene_biotype=protein_coding;locus_tag=YPO2693
AL590842.1	EMBL	CDS	3021463	3021669	.	+	0	ID=cds2621;Parent=gene2663;Dbxref=InterPro:IPR019663,UniProtKB/TrEMBL:Q0WDJ7,NCBI_GP:CAL21312.1;Name=CAL21312.1;Note=Similar to Escherichia coli hypothetical protein YbfA SW:YBFA_ECOLI (P28913) (68 aa) fasta scores: E(): 1.7e-18%2C 63.2%25 id in 68 aa;gbkey=CDS;gene=ybfA;product=putative membrane protein;protein_id=CAL21312.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3021499	3021558	.	+	.	ID=id6410;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=ybfA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3022008	3022490	.	+	.	ID=gene2664;Name=YPO2694;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2694
AL590842.1	EMBL	CDS	3022008	3022490	.	+	0	ID=cds2622;Parent=gene2664;Dbxref=InterPro:IPR013560,UniProtKB/TrEMBL:Q7CJR4,NCBI_GP:CAL21313.1;Name=CAL21313.1;Note=Similar to Escherichia coli hypothetical protein YbgA SW:YBGA_ECOLI (P24252) (169 aa) fasta scores: E(): 5.8e-30%2C 53.8%25 id in 143 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21313.1;transl_table=11
AL590842.1	EMBL	gene	3022620	3024083	.	+	.	ID=gene2665;Name=phr;gbkey=Gene;gene=phr;gene_biotype=protein_coding;gene_synonym=phrB;locus_tag=YPO2695
AL590842.1	EMBL	CDS	3022620	3024083	.	+	0	ID=cds2623;Parent=gene2665;Dbxref=GOA:Q7CJR3,InterPro:IPR002081,InterPro:IPR005101,InterPro:IPR006050,InterPro:IPR014729,InterPro:IPR018394,UniProtKB/TrEMBL:Q7CJR3,NCBI_GP:CAL21314.1;Name=CAL21314.1;Note=Similar to Escherichia coli deoxyribodipyrimidine photolyase PhrB SW:PHR_ECOLI (P00914) (472 aa) fasta scores: E(): 0%2C 60.2%25 id in 475 aa%2C and to Vibrio cholerae deoxyribodipyrimidine photolyase VCA0057 TR:Q9KNA8 (EMBL:AE004349) (469 aa) fasta scores: E(): 0%2C 51.4%25 id in 477 aa;gbkey=CDS;gene=phr;inference=similar to sequence:INSDC:AE004349;product=putative deoxyribodipyrimidine photolyase;protein_id=CAL21314.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3022629	3024002	.	+	.	ID=id6411;Note=Pfam match to entry PF00875 DNA_photolyase%2C DNA photolyase%2C score 605.10%2C E-value 4.2e-178;gbkey=misc_feature;gene=phr;inference=protein motif:PF00875
AL590842.1	EMBL	sequence_feature	3023592	3023630	.	+	.	ID=id6412;Note=PS00394 DNA photolyases class 1 signature 1.;gbkey=misc_feature;gene=phr;inference=protein motif:ProSite:PS00394
AL590842.1	EMBL	sequence_feature	3023652	3023711	.	+	.	ID=id6413;Note=PS00691 DNA photolyases class 1 signature 2.;gbkey=misc_feature;gene=phr;inference=protein motif:ProSite:PS00691
AL590842.1	EMBL	gene	3024080	3025111	.	+	.	ID=gene2666;Name=YPO2696;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2696
AL590842.1	EMBL	CDS	3024080	3025111	.	+	0	ID=cds2624;Parent=gene2666;Dbxref=GOA:Q8ZD92,InterPro:IPR000396,InterPro:IPR001279,InterPro:IPR024225,NCBI_GP:CAL21315.1;Name=CAL21315.1;Note=Probable periplasmic protein cyclic-nucleotide phosphodiesterase. Similar to Vibrio fischeri 3'%2C5'-cyclic-nucleotide phosphodiesterase CpdP SW:CPDP_VIBFI (Q56686) (330 aa) fasta scores: E(): 0%2C 46.6%25 id in 328 aa%2C and to Schizosaccharomyces pombe 3'%2C5'-cyclic-nucleotide phosphodiesterase Cgs2 SW:CNA1_SCHPO (P36599) (346 aa) fasta scores: E(): 9.1e-16%2C28.0%25 id in 336 aa.;gbkey=CDS;product=putative 3'%2C5'-cyclic-nucleotide phosphodiesterase;protein_id=CAL21315.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3024188	3025090	.	+	.	ID=id6414;Note=Pfam match to entry PF02112 PDEase_II%2C cAMP phosphodiesterases class-II%2C score 260.40%2C E-value 7e-79;gbkey=misc_feature;inference=protein motif:PF02112
AL590842.1	EMBL	sequence_feature	3024425	3024469	.	+	.	ID=id6415;Note=PS00607 cAMP phosphodiesterases class-II signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00607
AL590842.1	EMBL	gene	3025234	3025980	.	+	.	ID=gene2667;Name=YPO2697;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2697
AL590842.1	EMBL	CDS	3025234	3025980	.	+	0	ID=cds2625;Parent=gene2667;Dbxref=GOA:Q8ZD91,InterPro:IPR002678,NCBI_GP:CAL21316.1;Name=CAL21316.1;Note=Similar to Escherichia coli hypothetical protein YbgI SW:YBGI_ECOLI (P75743) (247 aa) fasta scores: E(): 0%2C69.2%25 id in 247 aa%2C and to C-terminal region of Haemophilus influenzae protein HI0105 SW:YBGI_HAEIN (Q57354) (279 aa) fasta scores: E(): 0%2C 60.7%25 id in 252 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21316.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3025264	3025965	.	+	.	ID=id6416;Note=Pfam match to entry PF01784 DUF34%2C Domain of unknown function DUF34%2C score 319.20%2C E-value 4.7e-92;gbkey=misc_feature;inference=protein motif:PF01784
AL590842.1	EMBL	pseudogene	3026599	3027252	.	+	.	ID=gene2668;Name=YPO2698;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO2698;pseudo=true
AL590842.1	EMBL	CDS	3026599	3027252	.	+	0	ID=cds2626;Parent=gene2668;Note=Similar to Escherichia coli hypothetical protein YbgJ SW:YBGJ_ECOLI (P75744) (218 aa) fasta scores: E(): 0%2C71.1%25 id in 218 aa%2C and to Haemophilus influenzae hypothetical protein HI1731 SW:YBGJ_HAEIN (P44299) (213 aa) fasta scores: E(): 0%2C 48.3%25 id in 209 aa. Contains a nonsense mutation (amber) at codon 182 which results in the deletion of 35 C-terminal amino acids. Effect on the function of the protein is unknown. The sequence has been checked and is believed to be correct;gbkey=CDS;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	3027249	3028199	.	+	.	ID=gene2669;Name=YPO2699;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2699
AL590842.1	EMBL	CDS	3027249	3028199	.	+	0	ID=cds2627;Parent=gene2669;Dbxref=GOA:Q7CJR2,InterPro:IPR003778,InterPro:IPR029000,UniProtKB/TrEMBL:Q7CJR2,NCBI_GP:CAL21318.1;Name=CAL21318.1;Note=Similar to Escherichia coli hypothetical protein YbgK SW:YBGK_ECOLI (P75745) (310 aa) fasta scores: E(): 0%2C69.0%25 id in 306 aa%2C and to internal region of Saccharomyces cerevisiae urea amidolyase YBR1448 SW:DUR1_YEAST (P32528) (1835 aa) fasta scores: E(): 1.4e-10%2C 30.8%25 id in 318 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21318.1;transl_table=11
AL590842.1	EMBL	gene	3028196	3028933	.	+	.	ID=gene2670;Name=YPO2700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2700
AL590842.1	EMBL	CDS	3028196	3028933	.	+	0	ID=cds2628;Parent=gene2670;Dbxref=GOA:Q8ZD89,InterPro:IPR005501,InterPro:IPR011330,NCBI_GP:CAL21319.1;Name=CAL21319.1;Note=Similar to Escherichia coli hypothetical protein YbgL SW:YBGL_ECOLI (P75746) (244 aa) fasta scores: E(): 0%2C71.3%25 id in 244 aa%2C and to Haemophilus influenzae hypothetical protein HI1729 SW:YBGL_HAEIN (P45347) (257 aa) fasta scores: E(): 0%2C 55.6%25 id in 243 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21319.1;transl_table=11
AL590842.1	EMBL	gene	3029018	3029749	.	+	.	ID=gene2671;Name=YPO2701;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2701
AL590842.1	EMBL	CDS	3029018	3029749	.	+	0	ID=cds2629;Parent=gene2671;Dbxref=InterPro:IPR010374,UniProtKB/TrEMBL:Q7CJR1,NCBI_GP:CAL21320.1;Name=CAL21320.1;Note=Similar to Streptomyces coelicolor possible integral membrane protein SCF51A.18C TR:Q9RL46 (EMBL:AL121596) (239 aa) fasta scores: E(): 0%2C 48.2%25 id in 220 aa%2C and to Campylobacter jejuni hydrophobic protein CJ0552 TR:Q9PHW2 (EMBL:AL139075) (230 aa) fasta scores: E(): 0%2C 46.7%25 id in 227 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL139075;product=putative membrane protein;protein_id=CAL21320.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3029030	3029083	.	+	.	ID=id6417;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3029096	3029164	.	+	.	ID=id6418;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3029207	3029260	.	+	.	ID=id6419;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3029504	3029572	.	+	.	ID=id6420;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3029600	3029668	.	+	.	ID=id6421;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3029746	3030765	.	+	.	ID=gene2672;Name=YPO2702;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2702
AL590842.1	EMBL	CDS	3029746	3030765	.	+	0	ID=cds2630;Parent=gene2672;Dbxref=InterPro:IPR009323,UniProtKB/TrEMBL:Q74SS4,NCBI_GP:CAL21321.1;Name=CAL21321.1;Note=Similar to Campylobacter jejuni putative integral membrane protein CJ0553 TR:Q9PHW1 (EMBL:AL139075) (317 aa) fasta scores: E(): 0%2C 44.8%25 id in 335 aa%2C and to Streptomyces coelicolor putative membrane protein SCF51A.17C TR:Q9RL47 (EMBL:AL121596) (324 aa) fasta scores: E(): 0%2C 42.6%25 id in 343 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL139075;product=putative membrane protein;protein_id=CAL21321.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3029758	3029817	.	+	.	ID=id6422;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3029851	3029904	.	+	.	ID=id6423;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3029947	3030015	.	+	.	ID=id6424;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3030073	3030141	.	+	.	ID=id6425;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3030184	3030252	.	+	.	ID=id6426;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3030313	3030381	.	+	.	ID=id6427;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3030439	3030507	.	+	.	ID=id6428;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3030526	3030594	.	+	.	ID=id6429;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3030700	3030759	.	+	.	ID=id6430;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3030775	3031422	.	+	.	ID=gene2673;Name=pcp;gbkey=Gene;gene=pcp;gene_biotype=protein_coding;locus_tag=YPO2703
AL590842.1	EMBL	CDS	3030775	3031422	.	+	0	ID=cds2631;Parent=gene2673;Dbxref=GOA:Q8ZD86,InterPro:IPR000816,InterPro:IPR016125,InterPro:IPR029762,NCBI_GP:CAL21322.1;Name=CAL21322.1;Note=Similar to Pseudomonas fluorescens pyrrolidone-carboxylate peptidase Pcp SW:PCP_PSEFL (P42673) (213 aa) fasta scores: E(): 0%2C 53.0%25 id in 215 aa%2C and to Streptomyces coelicolor pyrrolidone-carboxylate peptidase Pcp TR:Q9RL48 (EMBL:AL121596) (216 aa) fasta scores: E(): 0%2C 53.5%25 id in 217 aa;gbkey=CDS;gene=pcp;inference=similar to sequence:INSDC:AL121596;product=putative pyrrolidone-carboxylate peptidase;protein_id=CAL21322.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3030778	3031386	.	+	.	ID=id6431;Note=Pfam match to entry PF01470 Peptidase_C15%2CPyroglutamyl peptidase%2C score 396.20%2C E-value 3.2e-115;gbkey=misc_feature;gene=pcp;inference=protein motif:PF01470
AL590842.1	EMBL	sequence_feature	3031003	3031038	.	+	.	ID=id6432;Note=PS01333 Pyrrolidone-carboxylate peptidase glutamic acid active site.;gbkey=misc_feature;gene=pcp;inference=protein motif:ProSite:PS01333
AL590842.1	EMBL	sequence_feature	3031159	3031206	.	+	.	ID=id6433;Note=PS01334 Pyrrolidone-carboxylate peptidase cysteine active site.;gbkey=misc_feature;gene=pcp;inference=protein motif:ProSite:PS01334
AL590842.1	EMBL	gene	3031513	3032199	.	-	.	ID=gene2674;Name=ung;gbkey=Gene;gene=ung;gene_biotype=protein_coding;locus_tag=YPO2704
AL590842.1	EMBL	CDS	3031513	3032199	.	-	0	ID=cds2632;Parent=gene2674;Dbxref=GOA:Q8ZD85,InterPro:IPR002043,InterPro:IPR005122,InterPro:IPR018085,NCBI_GP:CAL21323.1;Name=CAL21323.1;Note=Similar to Escherichia coli uracil-DNA glycosylase Ung SW:UNG_ECOLI (P12295) (228 aa) fasta scores: E(): 0%2C73.9%25 id in 222 aa%2C and to Vibrio cholerae uracil-DNA glycosylase VC2359 TR:Q9KPK8 (EMBL:AE004306) (226 aa) fasta scores: E(): 0%2C 75.4%25 id in 224 aa;gbkey=CDS;gene=ung;inference=similar to sequence:INSDC:AE004306;product=putative uracil-DNA glycosylase;protein_id=CAL21323.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3031540	3032085	.	-	.	ID=id6434;Note=Pfam match to entry PF00315 UNG%2C Uracil-DNA glycosylase%2C score 431.10%2C E-value 9.8e-126;gbkey=misc_feature;gene=ung;inference=protein motif:PF00315
AL590842.1	EMBL	sequence_feature	3032002	3032031	.	-	.	ID=id6435;Note=PS00130 Uracil-DNA glycosylase signature.;gbkey=misc_feature;gene=ung;inference=protein motif:ProSite:PS00130
AL590842.1	EMBL	sequence_feature	3032092	3032115	.	-	.	ID=id6436;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ung;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3032552	3032935	.	+	.	ID=gene2675;Name=YPO2705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2705
AL590842.1	EMBL	CDS	3032552	3032935	.	+	0	ID=cds2633;Parent=gene2675;Dbxref=GOA:Q8ZD84,InterPro:IPR001150,InterPro:IPR011140,InterPro:IPR019777,NCBI_GP:CAL21324.1;Name=CAL21324.1;Note=Similar to Serratia liquefaciens hypothetical protein YfiD SW:YFID_SERLI (P18953) (127 aa) fasta scores: E(): 0%2C 86.6%25 id in 127 aa%2C and to Escherichia coli hypothetical protein YfiD SW:YFID_ECOLI (P33633) (127 aa) fasta scores: E(): 0%2C 82.7%25 id in 127 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21324.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3032558	3032878	.	+	.	ID=id6437;Note=Pfam match to entry PF01228 Gly_radical%2C Glycine radical%2C score 155.70%2C E-value 7.8e-43;gbkey=misc_feature;inference=protein motif:PF01228
AL590842.1	EMBL	sequence_feature	3032840	3032866	.	+	.	ID=id6438;Note=PS00850 Glycine radical signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00850
AL590842.1	EMBL	gene	3033114	3034076	.	+	.	ID=gene2676;Name=plaA;gbkey=Gene;gene=plaA;gene_biotype=protein_coding;gene_synonym=yplA;locus_tag=YPO2706
AL590842.1	EMBL	CDS	3033114	3034076	.	+	0	ID=cds2634;Parent=gene2676;Dbxref=InterPro:IPR024499,InterPro:IPR029058,UniProtKB/TrEMBL:Q74SS2,NCBI_GP:CAL21325.1;Name=CAL21325.1;Note=Similar to Yersinia enterocolitica phospholipase A YplA TR:O85477 (EMBL:AF067849) (324 aa) fasta scores: E(): 0%2C 69.0%25 id in 326 aa%2C and to Serratia sp MK1 phospholipase A1 PlaA TR:Q9X9D8 (EMBL:U37262) (320 aa) fasta scores: E(): 0%2C 57.5%25 id in 322 aa;gbkey=CDS;gene=plaA;inference=similar to sequence:INSDC:U37262;product=phospholipase A;protein_id=CAL21325.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3033681	3033710	.	+	.	ID=id6439;Note=PS00120 Lipases%2C serine active site.;gbkey=misc_feature;gene=plaA;inference=protein motif:ProSite:PS00120
AL590842.1	EMBL	gene	3034154	3034810	.	+	.	ID=gene2677;Name=yplB;gbkey=Gene;gene=yplB;gene_biotype=protein_coding;locus_tag=YPO2707
AL590842.1	EMBL	CDS	3034154	3034810	.	+	0	ID=cds2635;Parent=gene2677;Dbxref=InterPro:IPR002110,InterPro:IPR020683,UniProtKB/TrEMBL:Q8D103,NCBI_GP:CAL21326.1;Name=CAL21326.1;Note=Similar to Serratia spMK1. accessory protein PlaS TR:Q9X9D9 (EMBL:U37262) (251 aa) fasta scores: E(): 0%2C51.0%25 id in 200 aa%2C and to Serratia liquefaciens PhlB protein precursor SW:PHLB_SERLI (P18954) (227 aa) fasta scores: E(): 2.1e-26%2C 55.2%25 id in 143 aa%2C and to Yersinia enterocolitica hypothetical protein YplB TR:O85478 (EMBL:AF067849) (200 aa) fasta scores: E(): 0%2C 72.0%25 id in 161 aa. CDS is extended at the C-terminus and truncated at the N-terminus in comparison Y. enterocolitica orthologue. In frame upstream amino acids are similar to the N-terminus of the Y. enterocolitica orthologue. Unclear if the CDS is a pseudogene;gbkey=CDS;gene=yplB;inference=similar to sequence:INSDC:U37262;product=putative phospholipase A accessory protein;protein_id=CAL21326.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3034481	3034579	.	+	.	ID=id6440;Note=Pfam match to entry PF00023 ank%2C Ank repeat%2C score 9.10%2C E-value 6;gbkey=misc_feature;gene=yplB;inference=protein motif:PF00023
AL590842.1	EMBL	sequence_feature	3034580	3034678	.	+	.	ID=id6441;Note=Pfam match to entry PF00023 ank%2C Ank repeat%2C score 24.70%2C E-value 0.0021;gbkey=misc_feature;gene=yplB;inference=protein motif:PF00023
AL590842.1	EMBL	gene	3034941	3036266	.	-	.	ID=gene2678;Name=rbaB;gbkey=Gene;gene=rbaB;gene_biotype=protein_coding;gene_synonym=srmB;locus_tag=YPO2708
AL590842.1	EMBL	CDS	3034941	3036266	.	-	0	ID=cds2636;Parent=gene2678;Dbxref=GOA:Q7CJR0,InterPro:IPR000629,InterPro:IPR001650,InterPro:IPR011545,InterPro:IPR014001,InterPro:IPR014014,InterPro:IPR027417,InterPro:IPR028621,UniProtKB/TrEMBL:Q7CJR0,NCBI_GP:CAL21327.1;Name=CAL21327.1;Note=Probable DEAD box family helicase. Similar to Escherichia coli ATP-dependent RNA helicase SrmB SW:SRMB_ECOLI (P21507) (444 aa) fasta scores: E(): 0%2C 81.0%25 id in 432 aa%2C and to Haemophilus influenzae ATP-dependent RNA helicase SrmB SW:SRMB_HAEIN (P44701) (439 aa) fasta scores: E(): 0%2C 63.4%25 id in 434 aa;gbkey=CDS;gene=rbaB;product=ATP-dependent RNA helicase;protein_id=CAL21327.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3035238	3035483	.	-	.	ID=id6442;Note=Pfam match to entry PF00271 helicase_C%2C Helicases conserved C-terminal domain%2C score 104.10%2C E-value 2.7e-27;gbkey=misc_feature;gene=rbaB;inference=protein motif:PF00271
AL590842.1	EMBL	sequence_feature	3035592	3036218	.	-	.	ID=id6443;Note=Pfam match to entry PF00270 DEAD%2C DEAD/DEAH box helicase%2C score 225.50%2C E-value 2.3e-70;gbkey=misc_feature;gene=rbaB;inference=protein motif:PF00270
AL590842.1	EMBL	sequence_feature	3035778	3035804	.	-	.	ID=id6444;Note=PS00039 DEAD-box subfamily ATP-dependent helicases signature.;gbkey=misc_feature;gene=rbaB;inference=protein motif:ProSite:PS00039
AL590842.1	EMBL	sequence_feature	3036102	3036125	.	-	.	ID=id6445;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=rbaB;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3036506	3037264	.	+	.	ID=gene2679;Name=YPO2709;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2709
AL590842.1	EMBL	CDS	3036506	3037264	.	+	0	ID=cds2637;Parent=gene2679;Dbxref=GOA:Q74SR9,InterPro:IPR002052,InterPro:IPR002296,InterPro:IPR022882,InterPro:IPR029063,NCBI_GP:CAL21328.1;Name=CAL21328.1;Note=Similar to Escherichia coli hypothetical protein YfiC or B2575 TR:P76591 (EMBL:AE000344) (285 aa) fasta scores: E(): 0%2C 52.7%25 id in 237 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE000344;product=conserved hypothetical protein;protein_id=CAL21328.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3036881	3036901	.	+	.	ID=id6446;Note=PS00092 N-6 Adenine-specific DNA methylases signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00092
AL590842.1	EMBL	gene	3037547	3039184	.	-	.	ID=gene2680;Name=nadB;gbkey=Gene;gene=nadB;gene_biotype=protein_coding;gene_synonym=nicB;locus_tag=YPO2710
AL590842.1	EMBL	CDS	3037547	3039184	.	-	0	ID=cds2638;Parent=gene2680;Dbxref=GOA:Q8ZD80,InterPro:IPR003953,InterPro:IPR005288,InterPro:IPR013027,InterPro:IPR015939,InterPro:IPR027477,NCBI_GP:CAL21329.1;Name=CAL21329.1;Note=Similar to Escherichia coli L-aspartate oxidase NadB SW:NADB_ECOLI (P10902) (540 aa) fasta scores: E(): 0%2C 83.9%25 id in 533 aa%2C and to Vibrio cholerae L-aspartate oxidase VC2469 TR:Q9KPA4 (EMBL:AE004316) (550 aa) fasta scores: E(): 0%2C 76.0%25 id in 534 aa. Possible alternative translational start.;gbkey=CDS;gene=nadB;inference=similar to sequence:INSDC:AE004316;product=L-aspartate oxidase;protein_id=CAL21329.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3037883	3038818	.	-	.	ID=id6447;Note=Pfam match to entry PF00890 FAD_binding_2%2C FAD binding domain%2C score 537.20%2C E-value 1.2e-157;gbkey=misc_feature;gene=nadB;inference=protein motif:PF00890
AL590842.1	EMBL	gene	3039372	3039947	.	+	.	ID=gene2681;Name=rpoE;gbkey=Gene;gene=rpoE;gene_biotype=protein_coding;gene_synonym=sigE;locus_tag=YPO2711
AL590842.1	EMBL	CDS	3039372	3039947	.	+	0	ID=cds2639;Parent=gene2681;Dbxref=GOA:Q7CJQ9,InterPro:IPR000838,InterPro:IPR007627,InterPro:IPR011991,InterPro:IPR013249,InterPro:IPR013324,InterPro:IPR013325,InterPro:IPR014284,InterPro:IPR014286,UniProtKB/TrEMBL:Q7CJQ9,NCBI_GP:CAL21330.1;Name=CAL21330.1;Note=Probable alternative sigma factor. Similar to Escherichia coli RNA polymerase sigma E factor RpoE SW:RPOE_ECOLI (P34086) (191 aa) fasta scores: E(): 0%2C 92.7%25 id in 191 aa%2C and to Salmonella typhimurium RNA polymerase sigma E factor RpoE SW:RPOE_SALTY (P37401) (191 aa) fasta scores: E(): 0%2C 93.2%25 id in 191 aa;gbkey=CDS;gene=rpoE;product=RNA polymerase sigma E factor;protein_id=CAL21330.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3039474	3039638	.	+	.	ID=id6448;Note=Pfam match to entry PF00776 Sigma70_ECF%2C Sigma-70 factor (ECF subfamily)%2C score 99.70%2C E-value 5.7e-26;gbkey=misc_feature;gene=rpoE;inference=protein motif:PF00776
AL590842.1	EMBL	sequence_feature	3039507	3039602	.	+	.	ID=id6449;Note=PS01063 Sigma-70 factors ECF subfamily signature.;gbkey=misc_feature;gene=rpoE;inference=protein motif:ProSite:PS01063
AL590842.1	EMBL	sequence_feature	3039831	3039896	.	+	.	ID=id6450;Note=Predicted helix-turn-helix motif with score 1179 (+3.20 SD) at aa 154-175%2C sequence LSYEEIAAIMDCPVGTVRSRIF;gbkey=misc_feature;gene=rpoE
AL590842.1	EMBL	gene	3039973	3040629	.	+	.	ID=gene2682;Name=mclA;gbkey=Gene;gene=mclA;gene_biotype=protein_coding;gene_synonym=rseA;locus_tag=YPO2712
AL590842.1	EMBL	CDS	3039973	3040629	.	+	0	ID=cds2640;Parent=gene2682;Dbxref=GOA:Q7CJQ8,InterPro:IPR005572,InterPro:IPR005573,InterPro:IPR026279,UniProtKB/TrEMBL:Q7CJQ8,NCBI_GP:CAL21331.1;Name=CAL21331.1;Note=Similar to Escherichia coli sigma E factor negative regulatory protein RseA SW:RSEA_ECOLI (P38106) (216 aa) fasta scores: E(): 0%2C 63.3%25 id in 218 aa%2C and to Vibrio cholerae sigma E factor negative regulatory protein RseA TR:Q9KPA7 (EMBL:AE004316) (212 aa) fasta scores: E(): 2.4e-21%2C 42.9%25 id in 210 aa;gbkey=CDS;gene=mclA;inference=similar to sequence:INSDC:AE004316;product=sigma E factor negative regulatory protein;protein_id=CAL21331.1;transl_table=11
AL590842.1	EMBL	gene	3040629	3041585	.	+	.	ID=gene2683;Name=rseB;gbkey=Gene;gene=rseB;gene_biotype=protein_coding;locus_tag=YPO2713
AL590842.1	EMBL	CDS	3040629	3041585	.	+	0	ID=cds2641;Parent=gene2683;Dbxref=InterPro:IPR005588,UniProtKB/TrEMBL:Q7CJQ7,NCBI_GP:CAL21332.1;Name=CAL21332.1;Note=Similar to Escherichia coli sigma E factor regulatory protein RseB SW:RSEB_ECOLI (P46186) (318 aa) fasta scores: E(): 0%2C 63.6%25 id in 313 aa%2C and to Salmonella typhimurium sigma E factor regulatory protein RseB TR:O84885 (EMBL:AF001386) (318 aa) fasta scores: E(): 0%2C61.4%25 id in 319 aa;gbkey=CDS;gene=rseB;inference=similar to sequence:INSDC:AF001386;product=sigma E factor regulatory protein;protein_id=CAL21332.1;transl_table=11
AL590842.1	EMBL	gene	3041582	3042037	.	+	.	ID=gene2684;Name=rseC;gbkey=Gene;gene=rseC;gene_biotype=protein_coding;locus_tag=YPO2714
AL590842.1	EMBL	CDS	3041582	3042037	.	+	0	ID=cds2642;Parent=gene2684;Dbxref=InterPro:IPR007359,InterPro:IPR026268,UniProtKB/TrEMBL:Q7CJQ6,NCBI_GP:CAL21333.1;Name=CAL21333.1;Note=Similar to Escherichia coli sigma E factor regulatory protein RseC SW:RSEC_ECOLI (P46187) (159 aa) fasta scores: E(): 5.5e-28%2C 53.0%25 id in 151 aa%2C and to Salmonella typhimurium sigma E factor regulatory protein RseC TR:O84886 (EMBL:AF001386) (159 aa) fasta scores: E(): 2.4e-27%2C 52.3%25 id in 151 aa;gbkey=CDS;gene=rseC;inference=similar to sequence:INSDC:AF001386;product=sigma E factor regulatory protein;protein_id=CAL21333.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3041798	3041866	.	+	.	ID=id6451;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=rseC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3041876	3041944	.	+	.	ID=id6452;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=rseC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3042058	3042912	.	-	.	ID=gene2685;Name=lepA;gbkey=Gene;gene=lepA;gene_biotype=protein_coding;locus_tag=YPO2715
AL590842.1	EMBL	CDS	3042058	3042912	.	-	0	ID=cds2643;Parent=gene2685;Dbxref=UniProtKB/TrEMBL:Q0WDH6,NCBI_GP:CAL21334.1;Name=CAL21334.1;Note=Poor database matches%2C some similarity to Rickettsia prowazekii hypothetical protein RP296 TR:Q9ZDN1 (EMBL:AJ235271) (274 aa) fasta scores: E(): 1.3%2C 22.5%25 id in 227 aa%2C and to Bacillus subtilis hypothetical protein YqjA SW:YQJA_BACSU (P54538) (322 aa) fasta scores: E(): 2.9%2C 23.6%25 id in 242 aa. CDS DNA has a low GC content%2C33.91%25.;gbkey=CDS;gene=lepA;inference=similar to sequence:INSDC:AJ235271;product=putative membrane protein;protein_id=CAL21334.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3042706	3042771	.	-	.	ID=id6453;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=lepA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3042787	3042852	.	-	.	ID=id6454;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=lepA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3043412	3045211	.	+	.	ID=gene2686;Name=lepA;gbkey=Gene;gene=lepA;gene_biotype=protein_coding;locus_tag=YPO2715
AL590842.1	EMBL	CDS	3043412	3045211	.	+	0	ID=cds2644;Parent=gene2686;Dbxref=GOA:Q8ZD74,InterPro:IPR000640,InterPro:IPR000795,InterPro:IPR004161,InterPro:IPR005225,InterPro:IPR006297,InterPro:IPR009022,InterPro:IPR013842,InterPro:IPR027417,NCBI_GP:CAL21335.1;Name=CAL21335.1;Note=Similar to Escherichia coli probable GTP-binding elongation factor protein LepA SW:LEPA_ECOLI (P07682) (599 aa) fasta scores: E(): 0%2C 92.3%25 id in 599 aa%2C and to Haemophilus influenzae GTP-binding protein LepA SW:LEPA_HAEIN (P43729) (598 aa) fasta scores: E(): 0%2C 87.6%25 id in 597 aa%3B~YPO2716%3B~one of 2 probable transmembrane helices predicted;gbkey=CDS;gene=lepA;inference=protein motif:TMHMM:2.0;product=putative GTP-binding elongation factor;protein_id=CAL21335.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3043415	3044536	.	+	.	ID=id6455;Note=Pfam match to entry PF00009 GTP_EFTU%2C Elongation factor Tu family%2C score 389.30%2C E-value 1e-114;gbkey=misc_feature;gene=lepA;inference=protein motif:PF00009
AL590842.1	EMBL	sequence_feature	3043442	3043465	.	+	.	ID=id6456;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=lepA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3043535	3043582	.	+	.	ID=id6457;Note=PS00301 GTP-binding elongation factors signature.;gbkey=misc_feature;gene=lepA;inference=protein motif:ProSite:PS00301
AL590842.1	EMBL	gene	3045221	3046219	.	+	.	ID=gene2687;Name=lepB;gbkey=Gene;gene=lepB;gene_biotype=protein_coding;locus_tag=YPO2717
AL590842.1	EMBL	CDS	3045221	3046219	.	+	0	ID=cds2645;Parent=gene2687;Dbxref=GOA:Q7CJQ5,InterPro:IPR000223,InterPro:IPR015927,InterPro:IPR019533,InterPro:IPR019756,InterPro:IPR019757,InterPro:IPR019758,InterPro:IPR019759,InterPro:IPR019766,InterPro:IPR028360,UniProtKB/TrEMBL:Q7CJQ5,NCBI_GP:CAL21336.1;Name=CAL21336.1;Note=Similar to Salmonella typhimurium signal peptidase I LepB SW:LEP_SALTY (P23697) (324 aa) fasta scores: E(): 0%2C69.9%25 id in 332 aa%2C and to Escherichia coli signal peptidase I LepB SW:LEP_ECOLI (P00803) (324 aa) fasta scores: E(): 0%2C 68.1%25 id in 332 aa;gbkey=CDS;gene=lepB;inference=protein motif:TMHMM:2.0;product=signal peptidase I;protein_id=CAL21336.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3045233	3045286	.	+	.	ID=id6458;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=lepB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3045353	3046129	.	+	.	ID=id6459;Note=Pfam match to entry PF00461 Peptidase_S26%2C Signal peptidase I%2C score 275.90%2C E-value 1.2e-83;gbkey=misc_feature;gene=lepB;inference=protein motif:PF00461
AL590842.1	EMBL	sequence_feature	3045419	3045487	.	+	.	ID=id6460;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=lepB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3045506	3045529	.	+	.	ID=id6461;Note=PS00501 Signal peptidases I serine active site.;gbkey=misc_feature;gene=lepB;inference=protein motif:ProSite:PS00501
AL590842.1	EMBL	sequence_feature	3045677	3045715	.	+	.	ID=id6462;Note=PS00760 Signal peptidases I lysine active site.;gbkey=misc_feature;gene=lepB;inference=protein motif:ProSite:PS00760
AL590842.1	EMBL	sequence_feature	3046049	3046090	.	+	.	ID=id6463;Note=PS00761 Signal peptidases I signature 3.;gbkey=misc_feature;gene=lepB;inference=protein motif:ProSite:PS00761
AL590842.1	EMBL	gene	3046571	3047251	.	+	.	ID=gene2688;Name=rnc;gbkey=Gene;gene=rnc;gene_biotype=protein_coding;locus_tag=YPO2718
AL590842.1	EMBL	CDS	3046571	3047251	.	+	0	ID=cds2646;Parent=gene2688;Dbxref=GOA:Q8ZD72,InterPro:IPR000999,InterPro:IPR011907,InterPro:IPR014720,NCBI_GP:CAL21337.1;Name=CAL21337.1;Note=Similar to Escherichia coli ribonuclease III Rnc SW:RNC_ECOLI (P05797) (226 aa) fasta scores: E(): 0%2C 91.6%25 id in 226 aa%2C and to Salmonella typhimurium ribonuclease III Rnc SW:RNC_SALTY (Q56056) (224 aa) fasta scores: E(): 0%2C 89.4%25 id in 226 aa;gbkey=CDS;gene=rnc;product=ribonuclease III;protein_id=CAL21337.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3046682	3046954	.	+	.	ID=id6464;Note=Pfam match to entry PF00636 Ribonuclease_3%2C RNase3 domain.%2C score 165.30%2C E-value 1e-45;gbkey=misc_feature;gene=rnc;inference=protein motif:PF00636
AL590842.1	EMBL	sequence_feature	3046682	3046708	.	+	.	ID=id6465;Note=PS00517 Ribonuclease III family signature.;gbkey=misc_feature;gene=rnc;inference=protein motif:ProSite:PS00517
AL590842.1	EMBL	sequence_feature	3047036	3047239	.	+	.	ID=id6466;Note=Pfam match to entry PF00035 dsrm%2C Double-stranded RNA binding motif%2C score 90.50%2C E-value 3.5e-23;gbkey=misc_feature;gene=rnc;inference=protein motif:PF00035
AL590842.1	EMBL	gene	3047248	3048159	.	+	.	ID=gene2689;Name=era;gbkey=Gene;gene=era;gene_biotype=protein_coding;gene_synonym=rbaA;locus_tag=YPO2719
AL590842.1	EMBL	CDS	3047248	3048159	.	+	0	ID=cds2647;Parent=gene2689;Dbxref=GOA:Q8ZD71,InterPro:IPR004044,InterPro:IPR005225,InterPro:IPR005662,InterPro:IPR006073,InterPro:IPR009019,InterPro:IPR015946,InterPro:IPR027417,NCBI_GP:CAL21338.1;Name=CAL21338.1;Note=Similar to Escherichia coli GTP-binding protein%2Cwith similarity to the yeast RAS proteins%2C Era SW:ERA_ECOLI (P06616) (301 aa) fasta scores: E(): 0%2C 84.9%25 id in 299 aa%2Cand to Salmonella typhimurium GTP-binding protein Era SW:ERA_SALTY (Q56057) (301 aa) fasta scores: E(): 0%2C 82.3%25 id in 299 aa;gbkey=CDS;gene=era;product=putative GTP-binding protein;protein_id=CAL21338.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3047293	3047316	.	+	.	ID=id6467;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=era;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3048169	3048894	.	+	.	ID=gene2690;Name=recO;gbkey=Gene;gene=recO;gene_biotype=protein_coding;locus_tag=YPO2720
AL590842.1	EMBL	CDS	3048169	3048894	.	+	0	ID=cds2648;Parent=gene2690;Dbxref=GOA:Q8ZD70,InterPro:IPR003717,InterPro:IPR012340,InterPro:IPR022572,NCBI_GP:CAL21339.1;Name=CAL21339.1;Note=Similar to Escherichia coli DNA repair protein RecO SW:RECO_ECOLI (P15027) (242 aa) fasta scores: E(): 0%2C 78.6%25 id in 234 aa%2C and to Salmonella typhimurium DNA repair protein RecO SW:RECO_SALTY (Q56058) (241 aa) fasta scores: E(): 0%2C 77.8%25 id in 234 aa;gbkey=CDS;gene=recO;product=DNA repair protein;protein_id=CAL21339.1;transl_table=11
AL590842.1	EMBL	repeat_region	3048935	3050888	.	+	.	ID=id6468;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	3048935	3048962	.	+	.	ID=id6469;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	3049021	3050043	.	+	.	ID=gene2691;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO2721
AL590842.1	EMBL	CDS	3049021	3050043	.	+	0	ID=cds2649;Parent=gene2691;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL21340.1;Name=CAL21340.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL21340.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3049045	3049128	.	+	.	ID=id6470;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	sequence_feature	3049072	3049137	.	+	.	ID=id6471;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	3049366	3049899	.	+	.	ID=id6472;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	gene	3050040	3050822	.	+	.	ID=gene2692;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO2722
AL590842.1	EMBL	CDS	3050040	3050822	.	+	0	ID=cds2650;Parent=gene2692;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL21341.1;Name=CAL21341.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL21341.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3050208	3050747	.	+	.	ID=id6473;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	3050367	3050390	.	+	.	ID=id6474;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	INVERTED	3050861	3050888	.	-	.	ID=id6475;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	3050889	3051674	.	+	.	ID=gene2693;Name=YPO2723;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2723;partial=true;start_range=.,3050889
AL590842.1	EMBL	CDS	3050889	3051674	.	+	0	ID=cds2651;Parent=gene2693;Dbxref=InterPro:IPR006665,InterPro:IPR017732,InterPro:IPR017733,UniProtKB/TrEMBL:Q0WDG8,NCBI_GP:CAL21342.1;Name=CAL21342.1;Note=Poor database matches%2C similar to Pseudomonas aeruginosa hypothetical protein PA0078 TR:AAG03468 (EMBL:AE004447) (449 aa) fasta scores: E(): 3.7e-25%2C 35.1%25 id in 265 aa. This CDS may have been disrupted by the insertion of the upstream IS100 element.%3B~was marked partial;gbkey=CDS;inference=similar to sequence:INSDC:AE004447;partial=true;product=putative OmpA family protein;protein_id=CAL21342.1;start_range=.,3050889;transl_table=11
AL590842.1	EMBL	sequence_feature	3051108	3051176	.	+	.	ID=id6476;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3051351	3051647	.	+	.	ID=id6477;Note=Pfam match to entry PF00691 OmpA%2C OmpA family%2C score 110.70%2C E-value 2.8e-29;gbkey=misc_feature;inference=protein motif:PF00691
AL590842.1	EMBL	gene	3051683	3055510	.	+	.	ID=gene2694;Name=YPO2724;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2724
AL590842.1	EMBL	CDS	3051683	3055510	.	+	0	ID=cds2652;Parent=gene2694;Dbxref=InterPro:IPR009612,InterPro:IPR010623,InterPro:IPR017731,InterPro:IPR025743,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WDG7,NCBI_GP:CAL21343.1;Name=CAL21343.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA0077 TR:AAG03467 (EMBL:AE004446) (1101 aa) fasta scores: E(): 1.1e-30%2C 27.3%25 id in 1155 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA1669 TR:AAG05058 (EMBL:AE004594) (1175 aa) fasta scores: E(): 2e-25%2C 23.3%25 id in 1240 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004594;product=putative membrane protein;protein_id=CAL21343.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3051728	3051796	.	+	.	ID=id6478;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3051824	3051883	.	+	.	ID=id6479;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3051896	3051955	.	+	.	ID=id6480;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3051983	3052051	.	+	.	ID=id6481;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3052265	3052288	.	+	.	ID=id6482;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3052532	3052555	.	+	.	ID=id6483;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3053267	3053326	.	+	.	ID=id6484;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3055804	3058569	.	+	.	ID=gene2695;Name=YPO2725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2725
AL590842.1	EMBL	CDS	3055804	3058569	.	+	0	ID=cds2653;Parent=gene2695;Dbxref=InterPro:IPR006531,InterPro:IPR006533,InterPro:IPR017847,UniProtKB/TrEMBL:Q0WDG6,NCBI_GP:CAL21344.1;Name=CAL21344.1;Note=Similar to the N-terminal regions of Pseudomonas aeruginosa hypothetical protein PA0095 TR:AAG03485 (EMBL:AE004448) (741 aa) fasta scores: E(): 0%2C 34.3%25 id in 696 aa%2C and Pseudomonas aeruginosa hypothetical protein PA0091 TR:AAG03481 (EMBL:AE004447) (643 aa) fasta scores: E(): 0%2C 35.8%25 id in 653 aa. The C-terminal region of the CDS contains a lengthy proline and theronine rich repeat (PPETTA x 27);gbkey=CDS;inference=similar to sequence:INSDC:AE004448;product=conserved hypothetical protein;protein_id=CAL21344.1;transl_table=11
AL590842.1	EMBL	repeat_region	3058042	3058527	.	+	.	ID=id6485;Note=GC rich DNA repeat%2C ACAACGGCACCGCCGGAA x 27;gbkey=repeat_region
AL590842.1	EMBL	gene	3058928	3059776	.	+	.	ID=gene2696;Name=YPO2726;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2726
AL590842.1	EMBL	CDS	3058928	3059776	.	+	0	ID=cds2654;Parent=gene2696;Dbxref=UniProtKB/TrEMBL:Q7CJC6,NCBI_GP:CAL21345.1;Name=CAL21345.1;Note=no significant database hits to the full length CDS. C-terminus is similar to Cowpox virus A-type inclusion protein AtiP TR:Q9YN87 (EMBL:Y18386) (151 aa) fasta scores: E(): 3.1%2C 22.7%25 id in 150 aa%2C and to Drosophila orena heat shock protein HSP70Aa TR:AAG24874 (EMBL:AF302410) (642 aa) fasta scores: E(): 6.7%2C 22.9%25 id in 210 aa;gbkey=CDS;inference=similar to sequence:INSDC:Y18386;product=hypothetical protein;protein_id=CAL21345.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3059285	3059308	.	+	.	ID=id6486;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3059796	3060602	.	+	.	ID=gene2697;Name=YPO2727;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2727
AL590842.1	EMBL	CDS	3059796	3060602	.	+	0	ID=cds2655;Parent=gene2697;Dbxref=InterPro:IPR009211,InterPro:IPR011990,UniProtKB/TrEMBL:Q7CJC5,NCBI_GP:CAL21346.1;Name=CAL21346.1;Note=Poor database matches%2C similar to Pseudomonas aeruginosa hypothetical protein PA0086 TR:AAG03476 (EMBL:AE004447) (281 aa) fasta scores: E(): 2.6e-30%2C 37.5%25 id in 259 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004447;product=conserved hypothetical protein;protein_id=CAL21346.1;transl_table=11
AL590842.1	EMBL	gene	3060699	3061178	.	+	.	ID=gene2698;Name=YPO2728;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2728
AL590842.1	EMBL	CDS	3060699	3061178	.	+	0	ID=cds2656;Parent=gene2698;Dbxref=InterPro:IPR007048,UniProtKB/TrEMBL:Q7CJC4,NCBI_GP:CAL21347.1;Name=CAL21347.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA0087 TR:AAG03477 (EMBL:AE004447) (169 aa) fasta scores: E(): 8.2e-10%2C 30.8%25 id in 156 aa%2C and to Edwardsiella ictaluri putative protein EIP19 TR:O52404 (EMBL:AF037441) (158 aa) fasta scores: E(): 4.9e-06%2C 31.3%25 id in 150 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF037441;product=conserved hypothetical protein;protein_id=CAL21347.1;transl_table=11
AL590842.1	EMBL	gene	3061203	3061550	.	+	.	ID=gene2699;Name=YPO2729;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2729
AL590842.1	EMBL	CDS	3061203	3061550	.	+	0	ID=cds2657;Parent=gene2699;Dbxref=UniProtKB/TrEMBL:Q0WDG2,NCBI_GP:CAL21348.1;Name=CAL21348.1;Note=Similar to C-terminus of Salmonella typhimurium hypothetical 17.3 kDa protein TR:Q9X446 (EMBL:AF095578) (148 aa) fasta scores: E(): 0.19%2C 25.0%25 id in 112 aa%2C and to N-terminus of Xylella fastidiosa beta-lactamase induction signal transducer protein XF0165 TR:Q9PGY1 (EMBL:AE003870) (509 aa) fasta scores: E(): 1.7%2C 26.8%25 id in 112 aa. Doubtful CDS;gbkey=CDS;inference=similar to sequence:INSDC:AF095578;product=putative membrane protein;protein_id=CAL21348.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3061272	3061325	.	+	.	ID=id6487;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3061335	3061403	.	+	.	ID=id6488;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3061464	3061532	.	+	.	ID=id6489;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3061607	3061948	.	-	.	ID=gene2700;Name=YPO2730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2730
AL590842.1	EMBL	CDS	3061607	3061948	.	-	0	ID=cds2658;Parent=gene2700;Dbxref=InterPro:IPR004624,InterPro:IPR013987,InterPro:IPR013988,UniProtKB/TrEMBL:Q7CJC3,NCBI_GP:CAL21349.1;Name=CAL21349.1;Note=Similar to Escherichia coli hypothetical protein PhnA SW:PHNA_ECOLI (P16680) (111 aa) fasta scores: E(): 1.6e-30%2C 71.2%25 id in 111 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0128 TR:AAG03518 (EMBL:AE004450) (113 aa) fasta scores: E(): 2e-28%2C 63.4%25 id in 112 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004450;product=conserved hypothetical protein;protein_id=CAL21349.1;transl_table=11
AL590842.1	EMBL	gene	3062324	3064363	.	-	.	ID=gene2701;Name=YPO2731;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2731
AL590842.1	EMBL	CDS	3062324	3064363	.	-	0	ID=cds2659;Parent=gene2701;Dbxref=InterPro:IPR018702,UniProtKB/TrEMBL:Q0WDG0,NCBI_GP:CAL21350.1;Name=CAL21350.1;Note=Poor database matches%2C similar to Escherichia coli hypothetical protein YciQ SW:YCIQ_ECOLI (P45848) (631 aa) fasta scores: E(): 1.3e-16%2C 29.0%25 id in 645 aa. C-terminal region is glycine and serine rich.;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL21350.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3062738	3062803	.	-	.	ID=id6490;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3062819	3062884	.	-	.	ID=id6491;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3062924	3062989	.	-	.	ID=id6492;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3063002	3063067	.	-	.	ID=id6493;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3063488	3063553	.	-	.	ID=id6494;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3064368	3064910	.	-	.	ID=gene2702;Name=3;gbkey=Gene;gene=3;gene_biotype=protein_coding;gene_synonym=lemA;locus_tag=YPO2732
AL590842.1	EMBL	CDS	3064368	3064910	.	-	0	ID=cds2660;Parent=gene2702;Dbxref=InterPro:IPR007156,InterPro:IPR023353,UniProtKB/TrEMBL:Q74SX3,NCBI_GP:CAL21351.1;Name=CAL21351.1;Note=Similar to Listeria monocytogenes membrane protein LemA TR:P71452 (EMBL:U66186) (185 aa) fasta scores: E(): 2e-19%2C 39.6%25 id in 182 aa%2C and to Streptococcus gordonii LemA-like protein TR:AAG23700 (EMBL:AF017421) (189 aa) fasta scores: E(): 2.9e-20%2C 37.8%25 id in 185 aa;gbkey=CDS;gene=3;inference=similar to sequence:INSDC:U66186;product=putative exported protein;protein_id=CAL21351.1;transl_table=11
AL590842.1	EMBL	tRNA	3065197	3065271	.	+	.	ID=rna58;Note=tRNA Arg anticodon CCT%2C Cove score 71.72;gbkey=tRNA;product=tRNA-Arg
AL590842.1	EMBL	exon	3065197	3065271	.	+	.	ID=id6495;Parent=rna58;Note=tRNA Arg anticodon CCT%2C Cove score 71.72;gbkey=tRNA;product=tRNA-Arg
AL590842.1	EMBL	gene	3065526	3065993	.	+	.	ID=gene2703;Name=YPO2733;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2733
AL590842.1	EMBL	CDS	3065526	3065993	.	+	0	ID=cds2661;Parent=gene2703;Dbxref=UniProtKB/TrEMBL:Q74SX4,NCBI_GP:CAL21352.1;Name=CAL21352.1;Note=No significant database matches. CDS DNA has a low GC content%2C 35.47%25.;gbkey=CDS;product=putative exported protein;protein_id=CAL21352.1;transl_table=11
AL590842.1	EMBL	gene	3066438	3067094	.	+	.	ID=gene2704;Name=ccmA;gbkey=Gene;gene=ccmA;gene_biotype=protein_coding;locus_tag=YPO2734
AL590842.1	EMBL	CDS	3066438	3067094	.	+	0	ID=cds2662;Parent=gene2704;Dbxref=GOA:Q8ZD58,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR005895,InterPro:IPR017871,InterPro:IPR027417,NCBI_GP:CAL21353.1;Name=CAL21353.1;Note=Similar to Escherichia coli heme exporter protein A CcmA SW:CCMA_ECOLI (P33931) (207 aa) fasta scores: E(): 0%2C56.3%25 id in 206 aa%2C and to Vibrio cholerae heme exporter protein A vc2057 TR:Q9KQE3 (EMBL:AE004279) (207 aa) fasta scores: E(): 0%2C 65.7%25 id in 207 aa;gbkey=CDS;gene=ccmA;inference=similar to sequence:INSDC:AE004279;product=putative heme exporter protein A;protein_id=CAL21353.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3066516	3067052	.	+	.	ID=id6496;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 148.10%2C E-value 1.5e-40;gbkey=misc_feature;gene=ccmA;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	3066537	3066560	.	+	.	ID=id6497;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ccmA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3066825	3066869	.	+	.	ID=id6498;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=ccmA;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	3067080	3067091	.	+	.	ID=id6499;Note=PS00294 Prenyl group binding site (CAAX box).;gbkey=misc_feature;gene=ccmA;inference=protein motif:ProSite:PS00294
AL590842.1	EMBL	gene	3067064	3067723	.	+	.	ID=gene2705;Name=ccmB;gbkey=Gene;gene=ccmB;gene_biotype=protein_coding;locus_tag=YPO2735
AL590842.1	EMBL	CDS	3067064	3067723	.	+	0	ID=cds2663;Parent=gene2705;Dbxref=GOA:Q0WDF6,InterPro:IPR003544,InterPro:IPR026031,UniProtKB/TrEMBL:Q0WDF6,NCBI_GP:CAL21354.1;Name=CAL21354.1;Note=Similar to Escherichia coli heme exporter protein B CcmB SW:CCMB_ECOLI (P33930) (220 aa) fasta scores: E(): 0%2C77.2%25 id in 219 aa%2C and to Pantoea citrea CcmB-like protein CcmB TR:Q9Z650 (EMBL:AF103874) (219 aa) fasta scores: E(): 0%2C 73.1%25 id in 219 aa;gbkey=CDS;gene=ccmB;inference=similar to sequence:INSDC:AF103874;product=heme exporter protein B;protein_id=CAL21354.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3067187	3067255	.	+	.	ID=id6500;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3067349	3067417	.	+	.	ID=id6501;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3067445	3067513	.	+	.	ID=id6502;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3067532	3067600	.	+	.	ID=id6503;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3067643	3067711	.	+	.	ID=id6504;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3067786	3068523	.	+	.	ID=gene2706;Name=ccmC;gbkey=Gene;gene=ccmC;gene_biotype=protein_coding;locus_tag=YPO2736
AL590842.1	EMBL	CDS	3067786	3068523	.	+	0	ID=cds2664;Parent=gene2706;Dbxref=GOA:Q7CJC1,InterPro:IPR002541,InterPro:IPR003557,UniProtKB/TrEMBL:Q7CJC1,NCBI_GP:CAL21355.1;Name=CAL21355.1;Note=Similar to Escherichia coli heme exporter protein C CcmC SW:CCMC_ECOLI (P33929) (245 aa) fasta scores: E(): 0%2C75.8%25 id in 244 aa%2C and to Pantoea citrea CcmC-like protein CcmC TR:Q9Z649 (EMBL:AF103874) (246 aa) fasta scores: E(): 0%2C 76.9%25 id in 242 aa;gbkey=CDS;gene=ccmC;inference=similar to sequence:INSDC:AF103874;product=putative heme exporter protein C;protein_id=CAL21355.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3067846	3067914	.	+	.	ID=id6505;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3067855	3068469	.	+	.	ID=id6506;Note=Pfam match to entry PF01578 CytC_asm%2C Cytochrome C assembly protein%2C score 203.60%2C E-value 2.9e-57;gbkey=misc_feature;gene=ccmC;inference=protein motif:PF01578
AL590842.1	EMBL	sequence_feature	3067972	3068040	.	+	.	ID=id6507;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3068059	3068127	.	+	.	ID=id6508;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3068155	3068223	.	+	.	ID=id6509;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3068257	3068325	.	+	.	ID=id6510;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3068395	3068463	.	+	.	ID=id6511;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3068520	3068822	.	+	.	ID=gene2707;Name=ccmD;gbkey=Gene;gene=ccmD;gene_biotype=protein_coding;locus_tag=YPO2737
AL590842.1	EMBL	CDS	3068520	3068822	.	+	0	ID=cds2665;Parent=gene2707;Dbxref=GOA:Q7CJC0,InterPro:IPR007078,UniProtKB/TrEMBL:Q7CJC0,NCBI_GP:CAL21356.1;Name=CAL21356.1;Note=Similar to Escherichia coli heme exporter protein D CcmD SW:CCMD_ECOLI (P36770) (69 aa) fasta scores: E(): 2.7e-10%2C 50.7%25 id in 69 aa%2C and to Pantoea citrea CcmD-like protein CcmD TR:Q9Z648 (EMBL:AF103874) (77 aa) fasta scores: E(): 3.6e-11%2C 53.9%25 id in 76 aa. CDS extended at the C-terminus in comparison to orthologues.;gbkey=CDS;gene=ccmD;inference=similar to sequence:INSDC:AF103874;product=putative heme exporter protein D;protein_id=CAL21356.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3068562	3068630	.	+	.	ID=id6512;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=ccmD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3068819	3069313	.	+	.	ID=gene2708;Name=ccmE;gbkey=Gene;gene=ccmE;gene_biotype=protein_coding;locus_tag=YPO2738
AL590842.1	EMBL	CDS	3068819	3069313	.	+	0	ID=cds2666;Parent=gene2708;Dbxref=GOA:Q8ZD54,InterPro:IPR004329,InterPro:IPR012340,NCBI_GP:CAL21357.1;Name=CAL21357.1;Note=Similar to Escherichia coli cytochrome c-type biogenesis protein CcmE SW:CCME_ECOLI (P33928) (159 aa) fasta scores: E(): 0%2C 67.7%25 id in 155 aa%2C and to Pantoea citrea CcmE-like protein TR:Q9Z647 (EMBL:AF103874) (158 aa) fasta scores: E(): 0%2C 64.2%25 id in 148 aa;gbkey=CDS;gene=ccmE;inference=similar to sequence:INSDC:AF103874;product=putative cytochrome c-type biogenesis protein;protein_id=CAL21357.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3068837	3068905	.	+	.	ID=id6513;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=ccmE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3069310	3071280	.	+	.	ID=gene2709;Name=ccmF;gbkey=Gene;gene=ccmF;gene_biotype=protein_coding;locus_tag=YPO2739
AL590842.1	EMBL	CDS	3069310	3071280	.	+	0	ID=cds2667;Parent=gene2709;Dbxref=GOA:Q7CJB8,InterPro:IPR002541,InterPro:IPR003567,InterPro:IPR003568,UniProtKB/TrEMBL:Q7CJB8,NCBI_GP:CAL21358.1;Name=CAL21358.1;Note=Similar to Escherichia coli cytochrome c-type biogenesis protein CcmF SW:CCMF_ECOLI (P33927) (647 aa) fasta scores: E(): 0%2C 71.1%25 id in 654 aa%2C and to Pantoea citrea CcmF-like protein TR:Q9Z646 (EMBL:AF103874) (655 aa) fasta scores: E(): 0%2C 78.8%25 id in 646 aa;gbkey=CDS;gene=ccmF;inference=similar to sequence:INSDC:AF103874;product=putative cytochrome c-type biogenesis protein;protein_id=CAL21358.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3069322	3069378	.	+	.	ID=id6514;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3069439	3069498	.	+	.	ID=id6515;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3069592	3069651	.	+	.	ID=id6516;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3069670	3069738	.	+	.	ID=id6517;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3069835	3069903	.	+	.	ID=id6518;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3069940	3070008	.	+	.	ID=id6519;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3070015	3070668	.	+	.	ID=id6520;Note=Pfam match to entry PF01578 CytC_asm%2C Cytochrome C assembly protein%2C score 181.80%2C E-value 1.1e-50;gbkey=misc_feature;gene=ccmF;inference=protein motif:PF01578
AL590842.1	EMBL	sequence_feature	3070051	3070104	.	+	.	ID=id6521;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3070138	3070206	.	+	.	ID=id6522;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3070249	3070305	.	+	.	ID=id6523;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3070366	3070434	.	+	.	ID=id6524;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3070477	3070545	.	+	.	ID=id6525;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3070582	3070641	.	+	.	ID=id6526;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3070651	3070719	.	+	.	ID=id6527;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3070777	3070845	.	+	.	ID=id6528;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3071158	3071217	.	+	.	ID=id6529;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3071277	3071843	.	+	.	ID=gene2710;Name=ccmG;gbkey=Gene;gene=ccmG;gene_biotype=protein_coding;gene_synonym=dsbE;locus_tag=YPO2740
AL590842.1	EMBL	CDS	3071277	3071843	.	+	0	ID=cds2668;Parent=gene2710;Dbxref=GOA:Q8ZD52,InterPro:IPR004799,InterPro:IPR012336,InterPro:IPR013740,InterPro:IPR017937,NCBI_GP:CAL21359.1;Name=CAL21359.1;Note=Similar to Escherichia coli thiol:disulfide interchange protein DsbE SW:DSBE_ECOLI (P33926) (185 aa) fasta scores: E(): 0%2C 73.3%25 id in 176 aa%2C and to Pantoea citrea CcmG-like protein TR:Q9Z645 (EMBL:AF103874) (185 aa) fasta scores: E(): 0%2C 75.0%25 id in 176 aa;gbkey=CDS;gene=ccmG;inference=similar to sequence:INSDC:AF103874;product=thiol:disulfide interchange protein DsbE;protein_id=CAL21359.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3071505	3071561	.	+	.	ID=id6530;Note=PS00194 Thioredoxin family active site.;gbkey=misc_feature;gene=ccmG;inference=protein motif:ProSite:PS00194
AL590842.1	EMBL	gene	3071840	3073578	.	+	.	ID=gene2711;Name=ccmH;gbkey=Gene;gene=ccmH;gene_biotype=protein_coding;locus_tag=YPO2741
AL590842.1	EMBL	CDS	3071840	3072352	.	+	0	ID=cds2669;Parent=gene2711;Dbxref=InterPro:IPR005616,UniProtKB/TrEMBL:Q7CJB7,NCBI_GP:CAL21360.1;Name=CAL21360.1;Note=Similar to the N-terminal region of Escherichia coli cytochrome c-type biogenesis protein CcmH precursor SW:CCMH_ECOLI (P33925) (350 aa) fasta scores: E(): 1.3e-26%2C57.639%25 id in 144 aa%2C and to Pseudomonas fluorescens cytochrome c-type biogenesis protein CycL SW:CCMH_PSEFL (P52226) (156 aa) fasta scores: E(): 3.9e-19%2C 44.697%25 id in 132 aa;gbkey=CDS;gene=ccmH;inference=protein motif:TMHMM:2.0;product=putative cytochrome c-type biogenesis protein;protein_id=CAL21360.1;transl_table=11
AL590842.1	EMBL	CDS	3072352	3073578	.	+	0	ID=cds2670;Parent=gene2711;Dbxref=InterPro:IPR011990,InterPro:IPR013026,InterPro:IPR017560,InterPro:IPR019734,UniProtKB/TrEMBL:Q7CJB6,NCBI_GP:CAL21361.1;Name=CAL21361.1;Note=Similar to Rhizobium meliloti cytochrome c-type biogenesis protein CycH SW:CYCH_RHIME (P45400) (381 aa) fasta scores: E(): 1.4e-06%2C 27.491%25 id in 291 aa%2C and to Escherichia coli cytochrome C-type biogenesis protein CcmH SW:CCMH_ECOLI (P33925) (350 aa) fasta scores: E(): 6.6e-36%2C49.091%25 id in 220 aa%3B~YPO2743%3B~one of 2 probable transmembrane helices predicted;gbkey=CDS;gene=ccmH;inference=protein motif:TMHMM:2.0;product=putative cytochrome c-type biogenesis protein;protein_id=CAL21361.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3071846	3071899	.	+	.	ID=id6531;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3072134	3072202	.	+	.	ID=id6532;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=ccmH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3072361	3072420	.	+	.	ID=gene2712;Name=YPO2742;gbkey=Gene;gene_biotype=other;locus_tag=YPO2742
AL590842.1	EMBL	sequence_feature	3072361	3072420	.	+	.	ID=id6533;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3072607	3072675	.	+	.	ID=id6534;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3072607	3072675	.	+	.	ID=gene2713;Name=YPO2742;gbkey=Gene;gene_biotype=other;locus_tag=YPO2742
AL590842.1	EMBL	gene	3073614	3074378	.	+	.	ID=gene2714;Name=vacJ;gbkey=Gene;gene=vacJ;gene_biotype=protein_coding;locus_tag=YPO2743
AL590842.1	EMBL	CDS	3073614	3074378	.	+	0	ID=cds2671;Parent=gene2714;Dbxref=GOA:Q0WDE8,InterPro:IPR007428,UniProtKB/TrEMBL:Q0WDE8,NCBI_GP:CAL21362.1;Name=CAL21362.1;Note=Probable lipoprotein%2C similar to Shigella flexneri virulence protein required for intercellular spreading%2CVacJ SW:VACJ_SHIFL (P43262) (251 aa) fasta scores: E(): 0%2C75.0%25 id in 252 aa%2C and to Escherichia coli lipoprotein VacJ SW:VACJ_ECOLI (P76506) (251 aa) fasta scores: E(): 0%2C75.0%25 id in 252 aa;gbkey=CDS;gene=vacJ;product=VacJ lipoprotein;protein_id=CAL21362.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3073635	3073667	.	+	.	ID=id6535;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=vacJ;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	3074485	3075756	.	-	.	ID=gene2715;Name=fadL;gbkey=Gene;gene=fadL;gene_biotype=protein_coding;gene_synonym=ttr;locus_tag=YPO2744
AL590842.1	EMBL	CDS	3074485	3075756	.	-	0	ID=cds2672;Parent=gene2715;Dbxref=InterPro:IPR005017,UniProtKB/TrEMBL:Q74SY3,NCBI_GP:CAL21363.1;Name=CAL21363.1;Note=Similar to Escherichia coli long-chain fatty acid transport protein precursor FadL SW:FADL_ECOLI (P10384) (448 aa) fasta scores: E(): 0%2C 63.7%25 id in 455 aa%2C and to Vibrio cholerae long-chain fatty acid transport protein VCA0862 TR:Q9KL84 (EMBL:AE004414) (412 aa) fasta scores: E(): 0%2C 43.9%25 id in 424 aa;gbkey=CDS;gene=fadL;inference=similar to sequence:INSDC:AE004414;product=putative long-chain fatty acid transport protein;protein_id=CAL21363.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3075475	3075498	.	-	.	ID=id6536;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=fadL;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3076164	3076460	.	+	.	ID=gene2716;Name=YPO2745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2745
AL590842.1	EMBL	CDS	3076164	3076460	.	+	0	ID=cds2673;Parent=gene2716;Dbxref=InterPro:IPR005272,UniProtKB/TrEMBL:Q0WDE6,NCBI_GP:CAL21364.1;Name=CAL21364.1;Note=Similar to Escherichia coli hypothetical protein YfcZ SW:YFCZ_ECOLI (P76504) (94 aa) fasta scores: E(): 8e-24%2C 63.8%25 id in 94 aa%2C and to Haemophilus influenzae hypothetical protein HI0400 SW:Y400_HAEIN (P44686) (95 aa) fasta scores: E(): 3e-16%2C 47.8%25 id in 92 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21364.1;transl_table=11
AL590842.1	EMBL	gene	3076747	3078057	.	+	.	ID=gene2717;Name=YPO2746;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2746
AL590842.1	EMBL	CDS	3076747	3078057	.	+	0	ID=cds2674;Parent=gene2717;Dbxref=GOA:Q8ZD46,InterPro:IPR002155,InterPro:IPR012806,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR020610,InterPro:IPR020613,InterPro:IPR020615,InterPro:IPR020616,InterPro:IPR020617,NCBI_GP:CAL21365.1;Name=CAL21365.1;Note=Similar to Rattus norvegicus mitochondrial trifunctonal enzyme beta subunit%2C 3-ketoacyl-CoA thiolase SW:ECHB_RAT (Q60587) (475 aa) fasta scores: E(): 0%2C 44.0%25 id in 420 aa%2C and to Escherichia coli probable 3-ketoacyl-CoA thiolase YfcY SW:YFCY_ECOLI (P76503) (436 aa) fasta scores: E(): 0%2C 80.5%25 id in 436 aa;gbkey=CDS;product=putative 3-ketoacyl-CoA thiolase;protein_id=CAL21365.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3076780	3078054	.	+	.	ID=id6537;Note=Pfam match to entry PF00108 thiolase%2C Thiolase%2Cscore 466.00%2C E-value 3.2e-136;gbkey=misc_feature;inference=protein motif:PF00108
AL590842.1	EMBL	sequence_feature	3077029	3077085	.	+	.	ID=id6538;Note=PS00098 Thiolases acyl-enzyme intermediate signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00098
AL590842.1	EMBL	sequence_feature	3077890	3077940	.	+	.	ID=id6539;Note=PS00737 Thiolases signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00737
AL590842.1	EMBL	sequence_feature	3077995	3078036	.	+	.	ID=id6540;Note=PS00099 Thiolases active site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00099
AL590842.1	EMBL	gene	3078057	3080381	.	+	.	ID=gene2718;Name=faoA;gbkey=Gene;gene=faoA;gene_biotype=protein_coding;locus_tag=YPO2747
AL590842.1	EMBL	CDS	3078057	3080381	.	+	0	ID=cds2675;Parent=gene2718;Dbxref=GOA:Q8ZD45,InterPro:IPR001753,InterPro:IPR006108,InterPro:IPR006176,InterPro:IPR006180,InterPro:IPR008927,InterPro:IPR012802,InterPro:IPR013328,InterPro:IPR016040,InterPro:IPR029045,NCBI_GP:CAL21366.1;Name=CAL21366.1;Note=Similar to Pseudomonas fragi fatty oxidation complex alpha subunit%2C enoyl-CoA hydratase FaoA SW:FAOB_PSEFR (P28793) (715 aa) fasta scores: E(): 0%2C 36.1%25 id in 732 aa%2Cand to Escherichia coli putative fatty oxidation complex alpha subunit%2C enoyl-CoA hydratase YfcX SW:YFCX_ECOLI (P77399) (714 aa) fasta scores: E(): 0%2C 64.0%25 id in 726 aa. CDS extended at the N-terminus%2C possible alternative translational start. CDS contains insertion relative other orthologues%2C around codons 622 to 641%2C effect on function unknown;gbkey=CDS;gene=faoA;product=putative fatty oxidation complex alpha subunit%2Cenoyl-CoA hydratase;protein_id=CAL21366.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3078207	3078728	.	+	.	ID=id6541;Note=Pfam match to entry PF00378 ECH%2C Enoyl-CoA hydratase/isomerase family%2C score 215.20%2C E-value 9.8e-61;gbkey=misc_feature;gene=faoA;inference=protein motif:PF00378
AL590842.1	EMBL	sequence_feature	3079089	3079913	.	+	.	ID=id6542;Note=Pfam match to entry PF00725 3HCDH%2C 3-hydroxyacyl-CoA dehydrogenase%2C score 406.30%2C E-value 2.9e-118;gbkey=misc_feature;gene=faoA;inference=protein motif:PF00725
AL590842.1	EMBL	sequence_feature	3079623	3079697	.	+	.	ID=id6543;Note=PS00067 3-hydroxyacyl-CoA dehydrogenase signature.;gbkey=misc_feature;gene=faoA;inference=protein motif:ProSite:PS00067
AL590842.1	EMBL	gene	3080950	3081441	.	+	.	ID=gene2719;Name=sixA;gbkey=Gene;gene=sixA;gene_biotype=protein_coding;locus_tag=YPO2748
AL590842.1	EMBL	CDS	3080950	3081441	.	+	0	ID=cds2676;Parent=gene2719;Dbxref=GOA:Q7CJB4,InterPro:IPR004449,InterPro:IPR013078,InterPro:IPR029033,UniProtKB/TrEMBL:Q7CJB4,NCBI_GP:CAL21367.1;Name=CAL21367.1;Note=Similar to Escherichia coli phosphohistidine phosphatase SixA SW:SIXA_ECOLI (P76502) (161 aa) fasta scores: E(): 0%2C 64.6%25 id in 161 aa%2C and to Vibrio cholerae phosphohistidine phosphatase VC2070 TR:Q9KQD0 (EMBL:AE004281) (157 aa) fasta scores: E(): 5.2e-18%2C 42.3%25 id in 156 aa;gbkey=CDS;gene=sixA;inference=similar to sequence:INSDC:AE004281;product=putative phosphohistidine phosphatase;protein_id=CAL21367.1;transl_table=11
AL590842.1	EMBL	repeat_region	3081534	3081685	.	+	.	ID=id6544;Note=19 x 8bp repeats (G/A)CTTATTG;gbkey=repeat_region
AL590842.1	EMBL	gene	3081827	3082357	.	-	.	ID=gene2720;Name=YPO2749;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2749
AL590842.1	EMBL	CDS	3081827	3082357	.	-	0	ID=cds2677;Parent=gene2720;Dbxref=InterPro:IPR002625,InterPro:IPR022990,NCBI_GP:CAL21368.1;Name=CAL21368.1;Note=Similar to Escherichia coli hypothetical protein YfcN SW:YFCN_ECOLI (P77458) (183 aa) fasta scores: E(): 0%2C71.0%25 id in 176 aa%2C and to Vibrio cholerae hypothetical protein VC2119 TR:Q9KQ82 (EMBL:AE004285) (186 aa) fasta scores: E(): 0%2C 58.1%25 id in 167 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004285;product=conserved hypothetical protein;protein_id=CAL21368.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3081842	3082066	.	-	.	ID=id6545;Note=Pfam match to entry PF01713 Smr%2C Smr domain%2C score 121.10%2C E-value 2.1e-32;gbkey=misc_feature;inference=protein motif:PF01713
AL590842.1	EMBL	gene	3082727	3083659	.	+	.	ID=gene2721;Name=YPO2750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2750
AL590842.1	EMBL	CDS	3082727	3083659	.	+	0	ID=cds2678;Parent=gene2721;Dbxref=GOA:Q0WDE1,InterPro:IPR002052,InterPro:IPR004556,InterPro:IPR007848,InterPro:IPR017127,InterPro:IPR029063,NCBI_GP:CAL21369.1;Name=CAL21369.1;Note=Similar to C-terminal region of Escherichia coli hypothetical adenine-specific methylase YfcB SW:YFCB_ECOLI (P39199) (421 aa) fasta scores: E(): 0%2C 82.3%25 id in 310 aa%2Cand to the full length Vibrio cholerae putative adenine-specific methylase VC2118 TR:Q9KQ83 (EMBL:AE004285) (314 aa) fasta scores: E(): 0%2C 74.2%25 id in 310 aa. CDS simlilar in length to majority of orthologues%2C E. coli protein may be extended at the N-terminus;gbkey=CDS;inference=similar to sequence:INSDC:AE004285;product=conserved hypothetical protein;protein_id=CAL21369.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3083336	3083356	.	+	.	ID=id6546;Note=PS00092 N-6 Adenine-specific DNA methylases signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00092
AL590842.1	EMBL	gene	3083736	3084821	.	+	.	ID=gene2722;Name=aroC;gbkey=Gene;gene=aroC;gene_biotype=protein_coding;locus_tag=YPO2751
AL590842.1	EMBL	CDS	3083736	3084821	.	+	0	ID=cds2679;Parent=gene2722;Dbxref=GOA:Q8ZD41,InterPro:IPR000453,InterPro:IPR020541,NCBI_GP:CAL21370.1;Name=CAL21370.1;Note=Similar to Escherichia coli chorismate synthase AroC SW:AROC_ECOLI (P12008) (360 aa) fasta scores: E(): 0%2C 83.6%25 id in 360 aa%2C and to Salmonella typhi chorismate synthase AroC SW:AROC_SALTI (P16280) (360 aa) fasta scores: E(): 0%2C82.2%25 id in 360 aa;gbkey=CDS;gene=aroC;product=chorismate synthase;protein_id=CAL21370.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3083763	3084779	.	+	.	ID=id6547;Note=Pfam match to entry PF01264 Chorismate_synt%2CChorismate synthase%2C score 790.00%2C E-value 1.4e-240;gbkey=misc_feature;gene=aroC;inference=protein motif:PF01264
AL590842.1	EMBL	sequence_feature	3083781	3083828	.	+	.	ID=id6548;Note=PS00787 Chorismate synthase signature 1.;gbkey=misc_feature;gene=aroC;inference=protein motif:ProSite:PS00787
AL590842.1	EMBL	sequence_feature	3084105	3084149	.	+	.	ID=id6549;Note=PS00788 Chorismate synthase signature 2.;gbkey=misc_feature;gene=aroC;inference=protein motif:ProSite:PS00788
AL590842.1	EMBL	sequence_feature	3084690	3084740	.	+	.	ID=id6550;Note=PS00789 Chorismate synthase signature 3.;gbkey=misc_feature;gene=aroC;inference=protein motif:ProSite:PS00789
AL590842.1	EMBL	gene	3084827	3085654	.	+	.	ID=gene2723;Name=mepA;gbkey=Gene;gene=mepA;gene_biotype=protein_coding;locus_tag=YPO2752
AL590842.1	EMBL	CDS	3084827	3085654	.	+	0	ID=cds2680;Parent=gene2723;Dbxref=GOA:Q8ZD40,InterPro:IPR005073,InterPro:IPR009045,NCBI_GP:CAL21371.1;Name=CAL21371.1;Note=Similar to Escherichia coli penicillin-insensitive murein endopeptidase MepA SW:MEPA_ECOLI (P14007) (274 aa) fasta scores: E(): 0%2C 69.9%25 id in 272 aa%2C and to Haemophilus influenzae penicillin-insensitive murein endopeptidase precursor MepA SW:MEPA_HAEIN (P44566) (286 aa) fasta scores: E(): 0%2C 46.7%25 id in 276 aa;gbkey=CDS;gene=mepA;product=putative penicillin-insensitive murein endopeptidase;protein_id=CAL21371.1;transl_table=11
AL590842.1	EMBL	gene	3085658	3086464	.	+	.	ID=gene2724;Name=yfcA;gbkey=Gene;gene=yfcA;gene_biotype=protein_coding;locus_tag=YPO2753
AL590842.1	EMBL	CDS	3085658	3086464	.	+	0	ID=cds2681;Parent=gene2724;Dbxref=GOA:Q7CJB3,InterPro:IPR002781,UniProtKB/TrEMBL:Q7CJB3,NCBI_GP:CAL21372.1;Name=CAL21372.1;Note=Similar to Escherichia coli hypothetical protein YfcA SW:YFCA_ECOLI (P14008) (269 aa) fasta scores: E(): 0%2C72.1%25 id in 262 aa%2C and to Haemophilus influenzae hypothetical protein HI0198 SW:YFCA_HAEIN (P46490) (255 aa) fasta scores: E(): 0%2C 54.7%25 id in 247 aa;gbkey=CDS;gene=yfcA;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL21372.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3085667	3085726	.	+	.	ID=id6551;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yfcA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3085694	3086020	.	+	.	ID=id6552;Note=Pfam match to entry PF01925 DUF81%2C Domain of unknown function DUF81%2C score 28.30%2C E-value 6.5e-07;gbkey=misc_feature;gene=yfcA;inference=protein motif:PF01925
AL590842.1	EMBL	sequence_feature	3085745	3085813	.	+	.	ID=id6553;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yfcA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3085898	3085957	.	+	.	ID=id6554;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yfcA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3085976	3086044	.	+	.	ID=id6555;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yfcA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3086069	3086407	.	+	.	ID=id6556;Note=Pfam match to entry PF01925 DUF81%2C Domain of unknown function DUF81%2C score 97.30%2C E-value 1.1e-26;gbkey=misc_feature;gene=yfcA;inference=protein motif:PF01925
AL590842.1	EMBL	sequence_feature	3086117	3086185	.	+	.	ID=id6557;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yfcA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3086222	3086290	.	+	.	ID=id6558;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yfcA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3086564	3087106	.	+	.	ID=gene2725;Name=YPO2754;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2754
AL590842.1	EMBL	CDS	3086564	3087106	.	+	0	ID=cds2682;Parent=gene2725;Dbxref=InterPro:IPR007411,UniProtKB/TrEMBL:Q7CJB2,NCBI_GP:CAL21373.1;Name=CAL21373.1;Note=Similar to Escherichia coli hypothetical protein YfcM SW:YFCM_ECOLI (P76938) (182 aa) fasta scores: E(): 0%2C70.1%25 id in 177 aa%2C and to Vibrio cholerae hypothetical protein VC2113 TR:Q9KQ88 (EMBL:AE004285) (176 aa) fasta scores: E(): 0%2C 60.1%25 id in 173 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004285;product=conserved hypothetical protein;protein_id=CAL21373.1;transl_table=11
AL590842.1	EMBL	gene	3087164	3087442	.	+	.	ID=gene2726;Name=YPO2755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2755
AL590842.1	EMBL	CDS	3087164	3087442	.	+	0	ID=cds2683;Parent=gene2726;Dbxref=InterPro:IPR014987,UniProtKB/TrEMBL:Q0WDD6,NCBI_GP:CAL21374.1;Name=CAL21374.1;Note=Similar to Escherichia coli hypothetical protein YfcL SW:YFCL_ECOLI (P76496) (92 aa) fasta scores: E(): 4.4e-21%2C 66.3%25 id in 89 aa%2C and to Vibrio cholerae hypothetical protein VC2112 TR:Q9KQ89 (EMBL:AE004285) (87 aa) fasta scores: E(): 2e-12%2C 49.4%25 id in 89 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004285;product=conserved hypothetical protein;protein_id=CAL21374.1;transl_table=11
AL590842.1	EMBL	gene	3087620	3089689	.	-	.	ID=gene2727;Name=YPO2756;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2756
AL590842.1	EMBL	CDS	3087620	3089689	.	-	0	ID=cds2684;Parent=gene2727;Dbxref=GOA:Q8ZD36,InterPro:IPR006076,InterPro:IPR008471,InterPro:IPR017610,InterPro:IPR023032,InterPro:IPR029063,PDB:3PVC,PDB:3SGL,NCBI_GP:CAL21375.1;Name=CAL21375.1;Note=Similar to Escherichia coli hypothetical protein B2324 (EMBL:AE000321) (688 aa) fasta scores: E(): 0%2C 60.6%25 id in 680 aa%2C and to Vibrio cholerae hypothetical protein VC2110 TR:Q9KQ91 (EMBL:AE004284) (674 aa) fasta scores: E(): 0%2C 50.5%25 id in 679 aa. CDS is truncated at the N-terminus in comparison to the E. coli protein%2C but is similar in length to other orthologues;gbkey=CDS;inference=similar to sequence:INSDC:AE004284;product=conserved hypothetical protein;protein_id=CAL21375.1;transl_table=11
AL590842.1	EMBL	gene	3089861	3091084	.	+	.	ID=gene2728;Name=fabB;gbkey=Gene;gene=fabB;gene_biotype=protein_coding;gene_synonym=fabC;locus_tag=YPO2757
AL590842.1	EMBL	CDS	3089861	3091084	.	+	0	ID=cds2685;Parent=gene2728;Dbxref=GOA:Q7CJB1,InterPro:IPR014030,InterPro:IPR014031,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR018201,PDB:3OYT,UniProtKB/TrEMBL:Q7CJB1,NCBI_GP:CAL21376.1;Name=CAL21376.1;Note=Similar to Escherichia coli 3-oxoacyl-[acyl-carrier-protein] synthase I FabB SW:FABB_ECOLI (P14926) (406 aa) fasta scores: E(): 0%2C 85.3%25 id in 407 aa%2C and to Haemophilus influenzae 3-oxoacyl-[acyl-carrier-protein] synthase I FabB SW:FABB_HAEIN (P43710) (406 aa) fasta scores: E(): 0%2C 73.2%25 id in 406 aa;gbkey=CDS;gene=fabB;product=3-oxoacyl-[acyl-carrier-protein] synthase I;protein_id=CAL21376.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3089870	3091078	.	+	.	ID=id6559;Note=Pfam match to entry PF00109 ketoacyl-synt%2CBeta-ketoacyl synthase%2C score 416.40%2C E-value 2.7e-121;gbkey=misc_feature;gene=fabB;inference=protein motif:PF00109
AL590842.1	EMBL	sequence_feature	3090323	3090373	.	+	.	ID=id6560;Note=PS00606 Beta-ketoacyl synthases active site.;gbkey=misc_feature;gene=fabB;inference=protein motif:ProSite:PS00606
AL590842.1	EMBL	sequence_feature	3090854	3090886	.	+	.	ID=id6561;Note=PS00639 Eukaryotic thiol (cysteine) proteases histidine active site.;gbkey=misc_feature;gene=fabB;inference=protein motif:ProSite:PS00639
AL590842.1	EMBL	gene	3091492	3092187	.	-	.	ID=gene2729;Name=YPO2758;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2758
AL590842.1	EMBL	CDS	3091492	3092187	.	-	0	ID=cds2686;Parent=gene2729;Dbxref=GOA:Q74SZ5,InterPro:IPR001920,InterPro:IPR004380,InterPro:IPR015942,InterPro:IPR018187,PDB:3OJC,UniProtKB/TrEMBL:Q74SZ5,NCBI_GP:CAL21377.1;Name=CAL21377.1;Note=Similar to Streptococcus thermophilus aspartate racemase SW:RACD_STRTR (P29079) (243 aa) fasta scores: E(): 2.4e-11%2C 23.9%25 id in 234 aa%2C and to Escherichia coli hypothetical protein YgeA SW:YGEA_ECOLI (P03813) (230 aa) fasta scores: E(): 0%2C 58.5%25 id in 229 aa;gbkey=CDS;product=putative aspartate/glutamate racemase;protein_id=CAL21377.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3091495	3092160	.	-	.	ID=id6562;Note=Pfam match to entry PF01177 Asp_Glu_race%2C Aspartate / glutamate racemase%2C score 147.70%2C E-value 2e-40;gbkey=misc_feature;inference=protein motif:PF01177
AL590842.1	EMBL	sequence_feature	3091921	3091950	.	-	.	ID=id6563;Note=PS00923 Aspartate and glutamate racemases signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS00923
AL590842.1	EMBL	gene	3092975	3093505	.	+	.	ID=gene2730;Name=mrpA;gbkey=Gene;gene=mrpA;gene_biotype=protein_coding;gene_synonym=smfA;locus_tag=YPO2759
AL590842.1	EMBL	CDS	3092975	3093505	.	+	0	ID=cds2687;Parent=gene2730;Dbxref=GOA:Q7CJB0,InterPro:IPR000259,InterPro:IPR008966,UniProtKB/TrEMBL:Q7CJB0,NCBI_GP:CAL21378.1;Name=CAL21378.1;Note=Similar to Serratia marcescens fimbria A protein SmfA SW:FMA_SERMA (P13421) (174 aa) fasta scores: E(): 1.4e-30%2C 53.8%25 id in 169 aa%2C and to Proteus mirabilis major MR/P (mannose-resistant/Proteus-like) fimbrial protein MrpA SW:MRPA_PROMI (Q03011) (175 aa) fasta scores: E(): 1.1e-21%2C46.5%25 id in 172 aa;gbkey=CDS;gene=mrpA;product=putative mannose-resistant/Proteus-like fimbrial protein;protein_id=CAL21378.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3093059	3093502	.	+	.	ID=id6564;Note=Pfam match to entry PF00419 Fimbrial%2C Fimbrial proteins%2C score 169.20%2C E-value 6.8e-47;gbkey=misc_feature;gene=mrpA;inference=protein motif:PF00419
AL590842.1	EMBL	sequence_feature	3093359	3093382	.	+	.	ID=id6565;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=mrpA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3093847	3094884	.	-	.	ID=gene2731;Name=flk;gbkey=Gene;gene=flk;gene_biotype=protein_coding;locus_tag=YPO2760
AL590842.1	EMBL	CDS	3093847	3094884	.	-	0	ID=cds2688;Parent=gene2731;Dbxref=GOA:Q7CJA9,InterPro:IPR023597,UniProtKB/TrEMBL:Q7CJA9,NCBI_GP:CAL21379.1;Name=CAL21379.1;Note=Similar to Salmonella typhimurium probable flagellar assembly regulatory protein Flk TR:O06951 (EMBL:U77618) (333 aa) fasta scores: E(): 0%2C 47.5%25 id in 343 aa%2C and to Escherichia coli hypothetical protein Div SW:DIV_ECOLI (P15286) (331 aa) fasta scores: E(): 0%2C 42.0%25 id in 345 aa;gbkey=CDS;gene=flk;inference=similar to sequence:INSDC:U77618;product=putative flagellar assembly regulatory protein%2CFlk;protein_id=CAL21379.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3093853	3093903	.	-	.	ID=id6566;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=flk;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3095169	3096086	.	-	.	ID=gene2732;Name=YPO2761;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2761
AL590842.1	EMBL	CDS	3095169	3096086	.	-	0	ID=cds2689;Parent=gene2732;Dbxref=GOA:Q7CJA8,InterPro:IPR000620,UniProtKB/TrEMBL:Q7CJA8,NCBI_GP:CAL21380.1;Name=CAL21380.1;Note=Similar to Erwinia chrysanthemi extracellular enzyme regulatory protein%2C PecM SW:PECM_ERWCH (P42194) (297 aa) fasta scores: E(): 4.5e-10%2C 26.1%25 id in 295 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA4287 TR:AAG07675 (EMBL:AE004845) (296 aa) fasta scores: E(): 0%2C46.9%25 id in 290 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004845;product=putative membrane protein;protein_id=CAL21380.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3095238	3095609	.	-	.	ID=id6567;Note=Pfam match to entry PF00892 DUF6%2C Integral membrane protein DUF6%2C score 89.10%2C E-value 8.8e-23;gbkey=misc_feature;inference=protein motif:PF00892
AL590842.1	EMBL	sequence_feature	3095244	3095297	.	-	.	ID=id6568;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3095310	3095360	.	-	.	ID=id6569;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3095400	3095456	.	-	.	ID=id6570;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3095487	3095543	.	-	.	ID=id6571;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3095583	3095633	.	-	.	ID=id6572;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3095679	3096056	.	-	.	ID=id6573;Note=Pfam match to entry PF00892 DUF6%2C Integral membrane protein DUF6%2C score 68.60%2C E-value 1.3e-16;gbkey=misc_feature;inference=protein motif:PF00892
AL590842.1	EMBL	sequence_feature	3095679	3095744	.	-	.	ID=id6574;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3095751	3095816	.	-	.	ID=id6575;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3095847	3095903	.	-	.	ID=id6576;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3095925	3095990	.	-	.	ID=id6577;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3096006	3096071	.	-	.	ID=id6578;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3096312	3097097	.	+	.	ID=gene2733;Name=YPO2762;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2762
AL590842.1	EMBL	CDS	3096312	3097097	.	+	0	ID=cds2690;Parent=gene2733;Dbxref=GOA:Q7CJA7,InterPro:IPR003313,InterPro:IPR009057,InterPro:IPR011051,InterPro:IPR014710,InterPro:IPR018060,InterPro:IPR018062,InterPro:IPR020449,UniProtKB/TrEMBL:Q7CJA7,NCBI_GP:CAL21381.1;Name=CAL21381.1;Note=Similar to Vibrio cholerae putative transcriptional AraC/XylS family regulator VCA0937 TR:Q9KL12 (EMBL:AE004420) (263 aa) fasta scores: E(): 0%2C 45.6%25 id in 241 aa%2C and to Vibrio cholerae putative AraC type transcriptional regulator TR:Q9L4Y9 (EMBL:AF262020) (241 aa) fasta scores: E(): 0%2C 46.8%25 id in 233 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF262020;product=putative AraC-family regulatory protein;protein_id=CAL21381.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3096825	3097082	.	+	.	ID=id6579;Note=Pfam match to entry PF00165 HTH_AraC%2C Bacterial regulatory helix-turn-helix proteins%2C araC family%2C score 72.80%2C E-value 7.2e-18;gbkey=misc_feature;inference=protein motif:PF00165
AL590842.1	EMBL	sequence_feature	3096828	3096893	.	+	.	ID=id6580;Note=Predicted helix-turn-helix motif with score 1304 (+3.63 SD) at aa 134-155%2C sequence TSLALWAKRVYTTERTLSRRCQ;gbkey=misc_feature
AL590842.1	EMBL	sequence_feature	3096930	3097061	.	+	.	ID=id6581;Note=PS00041 Bacterial regulatory proteins%2C araC family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00041
AL590842.1	EMBL	gene	3097144	3098271	.	+	.	ID=gene2734;Name=pdxB;gbkey=Gene;gene=pdxB;gene_biotype=protein_coding;locus_tag=YPO2763
AL590842.1	EMBL	CDS	3097144	3098271	.	+	0	ID=cds2691;Parent=gene2734;Dbxref=GOA:Q8D0U3,InterPro:IPR006139,InterPro:IPR006140,InterPro:IPR016040,InterPro:IPR020921,InterPro:IPR024531,InterPro:IPR029752,InterPro:IPR029753,NCBI_GP:CAL21382.1;Name=CAL21382.1;Note=Similar to Escherichia coli probable erythronate-4-phosphate dehydrogenase PdxB SW:PDXB_ECOLI (P05459) (378 aa) fasta scores: E(): 0%2C 72.4%25 id in 370 aa%2Cand to Vibrio cholerae possible erythronate-4-phosphate dehydrogenase VC2108 TR:Q9KQ92 (EMBL:AE004284) (387 aa) fasta scores: E(): 0%2C 49.3%25 id in 375 aa;gbkey=CDS;gene=pdxB;inference=similar to sequence:INSDC:AE004284;product=putative D-isomer specific 2-hydroxyacid dehydrogenase;protein_id=CAL21382.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3097345	3097905	.	+	.	ID=id6582;Note=Pfam match to entry PF00389 2-Hacid_DH%2C D-isomer specific 2-hydroxyacid dehydrogenases%2C score 226.50%2CE-value 2e-92;gbkey=misc_feature;gene=pdxB;inference=protein motif:PF00389
AL590842.1	EMBL	sequence_feature	3097498	3097581	.	+	.	ID=id6583;Note=PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.;gbkey=misc_feature;gene=pdxB;inference=protein motif:ProSite:PS00065
AL590842.1	EMBL	sequence_feature	3097732	3097782	.	+	.	ID=id6584;Note=PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3.;gbkey=misc_feature;gene=pdxB;inference=protein motif:ProSite:PS00671
AL590842.1	EMBL	repeat_region	3098307	3099018	.	-	.	ID=id6585;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	3098415	3098873	.	-	.	ID=gene2735;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO2764
AL590842.1	EMBL	CDS	3098415	3098873	.	-	0	ID=cds2692;Parent=gene2735;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL21383.1;Name=CAL21383.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL21383.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3098508	3098819	.	-	.	ID=id6586;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	3099152	3100162	.	+	.	ID=gene2736;Name=asd;gbkey=Gene;gene=asd;gene_biotype=protein_coding;gene_synonym=usg-1;locus_tag=YPO2765
AL590842.1	EMBL	CDS	3099152	3100162	.	+	0	ID=cds2693;Parent=gene2736;Dbxref=GOA:Q7CJA6,InterPro:IPR000534,InterPro:IPR012080,InterPro:IPR012280,InterPro:IPR016040,UniProtKB/TrEMBL:Q7CJA6,NCBI_GP:CAL21384.1;Name=CAL21384.1;Note=Similar to Shewanella violacea aspartate-semialdehyde dehydrogenase Asd SW:DHAS_SHEVI (Q56734) (338 aa) fasta scores: E(): 0%2C 44.6%25 id in 336 aa%2Cand to Escherichia coli hypothetical protein Usg-1 SW:USG_ECOLI (P08390) (337 aa) fasta scores: E(): 0%2C 71.8%25 id in 337 aa;gbkey=CDS;gene=asd;product=putative aspartate-semialdehyde dehydrogenase;protein_id=CAL21384.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3099164	3100147	.	+	.	ID=id6587;Note=Pfam match to entry PF01118 Semialdhyde_dh%2CSemialdehyde dehydrogenase%2C score 408.00%2C E-value 8.9e-119;gbkey=misc_feature;gene=asd;inference=protein motif:PF01118
AL590842.1	EMBL	gene	3100249	3101043	.	+	.	ID=gene2737;Name=asuC;gbkey=Gene;gene=asuC;gene_biotype=protein_coding;gene_synonym=hisT,leuK,truA;locus_tag=YPO2766
AL590842.1	EMBL	CDS	3100249	3101043	.	+	0	ID=cds2694;Parent=gene2737;Dbxref=GOA:Q8ZD27,InterPro:IPR001406,InterPro:IPR020094,InterPro:IPR020095,InterPro:IPR020097,InterPro:IPR020103,NCBI_GP:CAL21385.1;Name=CAL21385.1;Note=Similar to Escherichia coli tRNA pseudouridine synthase A HisT SW:TRUA_ECOLI (P07649) (270 aa) fasta scores: E(): 0%2C 80.4%25 id in 260 aa%2C and to Vibrio cholerae tRNA pseudouridine synthase A VC0999 TR:Q9KTA4 (EMBL:AE004182) (264 aa) fasta scores: E(): 0%2C 69.8%25 id in 262 aa;gbkey=CDS;gene=asuC;inference=similar to sequence:INSDC:AE004182;product=tRNA pseudouridine synthase A;protein_id=CAL21385.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3100321	3100917	.	+	.	ID=id6588;Note=Pfam match to entry PF01416 PseudoU_synth_1%2C tRNA pseudouridine synthase%2C score 335.80%2C E-value 5e-97;gbkey=misc_feature;gene=asuC;inference=protein motif:PF01416
AL590842.1	EMBL	gene	3101200	3101862	.	+	.	ID=gene2738;Name=dedA;gbkey=Gene;gene=dedA;gene_biotype=protein_coding;locus_tag=YPO2767
AL590842.1	EMBL	CDS	3101200	3101862	.	+	0	ID=cds2695;Parent=gene2738;Dbxref=InterPro:IPR015414,UniProtKB/TrEMBL:Q74T01,NCBI_GP:CAL21386.1;Name=CAL21386.1;Note=Similar to Escherichia coli hypothetical protein protein DedA SW:DEDA_ECOLI (P09548) (219 aa) fasta scores: E(): 0%2C 85.6%25 id in 216 aa%2C and to Neisseria meningitidis (serogroup A) hypothetical protein DedA TR:Q9JRE5 (EMBL:AL162755) (214 aa) fasta scores: E(): 0%2C 66.4%25 id in 211 aa;gbkey=CDS;gene=dedA;inference=similar to sequence:INSDC:AL162755;product=putative membrane protein;protein_id=CAL21386.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3101278	3101346	.	+	.	ID=id6589;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=dedA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3101290	3101781	.	+	.	ID=id6590;Note=Pfam match to entry PF00597 DedA%2C DedA family%2C score 210.50%2C E-value 2.5e-59;gbkey=misc_feature;gene=dedA;inference=protein motif:PF00597
AL590842.1	EMBL	sequence_feature	3101410	3101478	.	+	.	ID=id6591;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=dedA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3101665	3101733	.	+	.	ID=id6592;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=dedA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3101770	3101823	.	+	.	ID=id6593;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=dedA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3102093	3103007	.	+	.	ID=gene2739;Name=accD;gbkey=Gene;gene=accD;gene_biotype=protein_coding;gene_synonym=dedB,usg;locus_tag=YPO2768
AL590842.1	EMBL	CDS	3102093	3103007	.	+	0	ID=cds2696;Parent=gene2739;Dbxref=GOA:Q0WDC3,InterPro:IPR000022,InterPro:IPR000438,InterPro:IPR011762,InterPro:IPR029045,NCBI_GP:CAL21387.1;Name=CAL21387.1;Note=Similar to Escherichia coli acetyl-coenzyme A carboxylase carboxyl transferase subunit beta AccD SW:ACCD_ECOLI (P08193) (304 aa) fasta scores: E(): 0%2C 86.2%25 id in 298 aa%2C and to Vibrio cholerae acetyl-CoA carboxylase%2C carboxyl transferase beta subunit VC1000 TR:Q9KTA3 (EMBL:AE004182) (308 aa) fasta scores: E(): 0%2C76.0%25 id in 288 aa;gbkey=CDS;gene=accD;inference=similar to sequence:INSDC:AE004182;product=acetyl-coenzyme A carboxylase carboxyl transferase subunit beta;protein_id=CAL21387.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3102435	3102800	.	+	.	ID=id6594;Note=Pfam match to entry PF01039 Carboxyl_trans%2C Carboxyl transferase domain%2C score 33.30%2C E-value 2.9e-08;gbkey=misc_feature;gene=accD;inference=protein motif:PF01039
AL590842.1	EMBL	gene	3103256	3104560	.	+	.	ID=gene2740;Name=dedC;gbkey=Gene;gene=dedC;gene_biotype=protein_coding;gene_synonym=folC;locus_tag=YPO2769
AL590842.1	EMBL	CDS	3103256	3104560	.	+	0	ID=cds2697;Parent=gene2740;Dbxref=GOA:Q0WDC2,InterPro:IPR001645,InterPro:IPR004101,InterPro:IPR013221,InterPro:IPR018109,PDB:3QCZ,UniProtKB/TrEMBL:Q0WDC2,NCBI_GP:CAL21388.1;Name=CAL21388.1;Note=Similar to Escherichia coli folylpolyglutamate synthase and dihydrofolate synthase bifunctional protein%2CFolC SW:FOLC_ECOLI (P08192) (422 aa) fasta scores: E(): 0%2C65.3%25 id in 432 aa%2C and to Haemophilus influenzae folylpolyglutamate synthase FolC SW:FOLC_HAEIN (P43775) (437 aa) fasta scores: E(): 0%2C 51.5%25 id in 454 aa;gbkey=CDS;gene=dedC;product=putative FolC bifunctional protein;protein_id=CAL21388.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3103406	3104212	.	+	.	ID=id6595;Note=Pfam match to entry PF01225 Mur_ligase%2C Mur ligase family%2C score 79.40%2C E-value 7.3e-20;gbkey=misc_feature;gene=dedC;inference=protein motif:PF01225
AL590842.1	EMBL	sequence_feature	3103409	3103480	.	+	.	ID=id6596;Note=PS01011 Folylpolyglutamate synthase signature 1.;gbkey=misc_feature;gene=dedC;inference=protein motif:ProSite:PS01011
AL590842.1	EMBL	sequence_feature	3103685	3103732	.	+	.	ID=id6597;Note=PS01012 Folylpolyglutamate synthase signature 2.;gbkey=misc_feature;gene=dedC;inference=protein motif:ProSite:PS01012
AL590842.1	EMBL	gene	3104680	3105402	.	+	.	ID=gene2741;Name=dedD;gbkey=Gene;gene=dedD;gene_biotype=protein_coding;locus_tag=YPO2770
AL590842.1	EMBL	CDS	3104680	3105402	.	+	0	ID=cds2698;Parent=gene2741;Dbxref=InterPro:IPR007730,UniProtKB/TrEMBL:Q0WDC1,NCBI_GP:CAL21389.1;Name=CAL21389.1;Note=Similar to Escherichia coli hypothetical protein DedD SW:DEDD_ECOLI (P09549) (211 aa) fasta scores: E(): 8.9e-18%2C 56.1%25 id in 230 aa%2C and to Vibrio cholerae DedD hypothetical protein VC1002 TR:Q9KTA1 (EMBL:AE004182) (198 aa) fasta scores: E(): 5.7e-07%2C 35.5%25 id in 234 aa;gbkey=CDS;gene=dedD;inference=similar to sequence:INSDC:AE004182;product=putative membrane protein;protein_id=CAL21389.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3104692	3104760	.	+	.	ID=id6598;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=dedD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3105714	3106223	.	+	.	ID=gene2742;Name=cvpA;gbkey=Gene;gene=cvpA;gene_biotype=protein_coding;gene_synonym=dedE;locus_tag=YPO2771
AL590842.1	EMBL	CDS	3105714	3106223	.	+	0	ID=cds2699;Parent=gene2742;Dbxref=GOA:Q7CJA5,InterPro:IPR003825,UniProtKB/TrEMBL:Q7CJA5,NCBI_GP:CAL21390.1;Name=CAL21390.1;Note=Similar to Escherichia coli colicin V production protein CvpA SW:CVPA_ECOLI (P08550) (162 aa) fasta scores: E(): 0%2C 83.1%25 id in 160 aa%2C and to Haemophilus influenzae possible colicin V production protein CvpA SW:CVPA_HAEIN (P45108) (163 aa) fasta scores: E(): 0%2C 67.5%25 id in 160 aa;gbkey=CDS;gene=cvpA;inference=protein motif:TMHMM:2.0;product=putative colicin V production protein;protein_id=CAL21390.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3105723	3105791	.	+	.	ID=id6599;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=cvpA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3105804	3105872	.	+	.	ID=id6600;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=cvpA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3105900	3105968	.	+	.	ID=id6601;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=cvpA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3106005	3106073	.	+	.	ID=id6602;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=cvpA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3106236	3107753	.	+	.	ID=gene2743;Name=purF;gbkey=Gene;gene=purF;gene_biotype=protein_coding;locus_tag=YPO2772
AL590842.1	EMBL	CDS	3106236	3107753	.	+	0	ID=cds2700;Parent=gene2743;Dbxref=GOA:Q7CJA4,InterPro:IPR000583,InterPro:IPR000836,InterPro:IPR005854,InterPro:IPR017932,InterPro:IPR029055,InterPro:IPR029057,UniProtKB/TrEMBL:Q7CJA4,NCBI_GP:CAL21391.1;Name=CAL21391.1;Note=Similar to Escherichia coli amidophosphoribosyltransferase PurF SW:PUR1_ECOLI (P00496) (504 aa) fasta scores: E(): 0%2C 87.1%25 id in 504 aa%2C and to Vibrio cholerae amidophosphoribosyltransferase VC1004 TR:Q9KT99 (EMBL:AE004182) (504 aa) fasta scores: E(): 0%2C74.1%25 id in 506 aa;gbkey=CDS;gene=purF;inference=similar to sequence:INSDC:AE004182;product=amidophosphoribosyltransferase;protein_id=CAL21391.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3106236	3106253	.	+	.	ID=id6603;Note=PS00443 Glutamine amidotransferases class-II active site.;gbkey=misc_feature;gene=purF;inference=protein motif:ProSite:PS00443
AL590842.1	EMBL	sequence_feature	3106239	3106817	.	+	.	ID=id6604;Note=Pfam match to entry PF00310 GATase_2%2C Glutamine amidotransferases class-II%2C score 342.30%2C E-value 3.8e-116;gbkey=misc_feature;gene=purF;inference=protein motif:PF00310
AL590842.1	EMBL	sequence_feature	3107025	3107534	.	+	.	ID=id6605;Note=Pfam match to entry PF00156 Pribosyltran%2CPhosphoribosyl transferase domain%2C score 41.10%2C E-value 2.5e-08;gbkey=misc_feature;gene=purF;inference=protein motif:PF00156
AL590842.1	EMBL	sequence_feature	3107322	3107360	.	+	.	ID=id6606;Note=PS00103 Purine/pyrimidine phosphoribosyl transferases signature.;gbkey=misc_feature;gene=purF;inference=protein motif:ProSite:PS00103
AL590842.1	EMBL	gene	3108000	3108572	.	+	.	ID=gene2744;Name=ubiX;gbkey=Gene;gene=ubiX;gene_biotype=protein_coding;locus_tag=YPO2773
AL590842.1	EMBL	CDS	3108000	3108572	.	+	0	ID=cds2701;Parent=gene2744;Dbxref=GOA:Q0WDB8,InterPro:IPR003382,InterPro:IPR004507,UniProtKB/TrEMBL:Q0WDB8,NCBI_GP:CAL21392.1;Name=CAL21392.1;Note=Similar to Escherichia coli probable 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiX SW:UBIX_ECOLI (P09550) (189 aa) fasta scores: E(): 0%2C 79.3%25 id in 188 aa%2C and to Pasteurella multocida hypothetical protein UbiX TR:AAK02784 (EMBL:AE006106) (193 aa) fasta scores: E(): 0%2C 72.3%25 id in 188 aa;gbkey=CDS;gene=ubiX;inference=similar to sequence:INSDC:AE006106;product=probable 3-octaprenyl-4-hydroxybenzoate carboxy-lyase;protein_id=CAL21392.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3108003	3108368	.	+	.	ID=id6607;Note=Pfam match to entry PF02441 Flavoprotein%2C %2C score 164.00%2C E-value 2.5e-45;gbkey=misc_feature;gene=ubiX;inference=protein motif:PF02441
AL590842.1	EMBL	gene	3109091	3109879	.	+	.	ID=gene2745;Name=hisJ;gbkey=Gene;gene=hisJ;gene_biotype=protein_coding;locus_tag=YPO2774
AL590842.1	EMBL	CDS	3109091	3109879	.	+	0	ID=cds2702;Parent=gene2745;Dbxref=GOA:Q0WDB7,InterPro:IPR001638,InterPro:IPR005768,InterPro:IPR018313,UniProtKB/TrEMBL:Q0WDB7,NCBI_GP:CAL21393.1;Name=CAL21393.1;Note=Similar to Salmonella typhimurium histidine-binding periplasmic protein precursor HisJ SW:HISJ_SALTY (P02910) (260 aa) fasta scores: E(): 0%2C 76.4%25 id in 258 aa%2C and to Escherichia coli histidine-binding periplasmic protein precursor HisJ SW:HISJ_ECOLI (P39182) (260 aa) fasta scores: E(): 0%2C 76.4%25 id in 259 aa;gbkey=CDS;gene=hisJ;product=histidine-binding periplasmic protein;protein_id=CAL21393.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3109097	3109855	.	+	.	ID=id6608;Note=Pfam match to entry PF00497 SBP_bac_3%2C Bacterial extracellular solute-binding proteins%2C family 3%2C score 368.20%2C E-value 8.4e-107;gbkey=misc_feature;gene=hisJ;inference=protein motif:PF00497
AL590842.1	EMBL	sequence_feature	3109244	3109285	.	+	.	ID=id6609;Note=PS01039 Bacterial extracellular solute-binding proteins%2C family 3 signature.;gbkey=misc_feature;gene=hisJ;inference=protein motif:ProSite:PS01039
AL590842.1	EMBL	gene	3109982	3110668	.	+	.	ID=gene2746;Name=hisQ;gbkey=Gene;gene=hisQ;gene_biotype=protein_coding;locus_tag=YPO2775
AL590842.1	EMBL	CDS	3109982	3110668	.	+	0	ID=cds2703;Parent=gene2746;Dbxref=GOA:Q7CJA3,InterPro:IPR000515,InterPro:IPR010065,UniProtKB/TrEMBL:Q7CJA3,NCBI_GP:CAL21394.1;Name=CAL21394.1;Note=Similar to Salmonella typhimurium histidine transport system permease protein HisQ SW:HISQ_SALTY (P02913) (228 aa) fasta scores: E(): 0%2C 78.1%25 id in 228 aa%2Cand to Escherichia coli histidine transport system permease protein HisQ SW:HISQ_ECOLI (P52094) (228 aa) fasta scores: E(): 0%2C 77.6%25 id in 228 aa;gbkey=CDS;gene=hisQ;inference=protein motif:TMHMM:2.0;product=histidine transport system permease protein HisQ;protein_id=CAL21394.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3110024	3110092	.	+	.	ID=id6610;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=hisQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3110141	3110209	.	+	.	ID=id6611;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=hisQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3110237	3110305	.	+	.	ID=id6612;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=hisQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3110324	3110545	.	+	.	ID=id6613;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 61.90%2C E-value 1.4e-14;gbkey=misc_feature;gene=hisQ;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	3110327	3110413	.	+	.	ID=id6614;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;gene=hisQ;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	3110426	3110494	.	+	.	ID=id6615;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=hisQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3110552	3110620	.	+	.	ID=id6616;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=hisQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3110665	3111381	.	+	.	ID=gene2747;Name=hisM;gbkey=Gene;gene=hisM;gene_biotype=protein_coding;locus_tag=YPO2776
AL590842.1	EMBL	CDS	3110665	3111381	.	+	0	ID=cds2704;Parent=gene2747;Dbxref=GOA:Q7CJA2,InterPro:IPR000515,InterPro:IPR010065,UniProtKB/TrEMBL:Q7CJA2,NCBI_GP:CAL21395.1;Name=CAL21395.1;Note=Similar to Salmonella typhimurium histidine transport system permease protein HisM SW:HISM_SALTY (P02912) (235 aa) fasta scores: E(): 0%2C 82.6%25 id in 235 aa%2Cand to Escherichia coli histidine transport system permease protein HisM SW:HISM_ECOLI (P20091) (238 aa) fasta scores: E(): 0%2C 81.5%25 id in 238 aa;gbkey=CDS;gene=hisM;inference=protein motif:TMHMM:2.0;product=histidine transport system permease protein HisM;protein_id=CAL21395.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3110722	3110790	.	+	.	ID=id6617;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=hisM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3110824	3110892	.	+	.	ID=id6618;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=hisM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3111034	3111255	.	+	.	ID=id6619;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 42.10%2C E-value 1.2e-08;gbkey=misc_feature;gene=hisM;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	3111037	3111123	.	+	.	ID=id6620;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;gene=hisM;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	3111259	3111327	.	+	.	ID=id6621;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=hisM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3111395	3112192	.	+	.	ID=gene2748;Name=hisP;gbkey=Gene;gene=hisP;gene_biotype=protein_coding;locus_tag=YPO2777
AL590842.1	EMBL	CDS	3111395	3112192	.	+	0	ID=cds2705;Parent=gene2748;Dbxref=GOA:Q7CJA1,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CJA1,NCBI_GP:CAL21396.1;Name=CAL21396.1;Note=Similar to Salmonella typhimurium histidine transport ATP-binding protein HisP SW:HISP_SALTY (P02915) (258 aa) fasta scores: E(): 0%2C 85.5%25 id in 256 aa%2C and to Escherichia coli histidine transport ATP-binding protein HisP SW:HISP_ECOLI (P07109) (257 aa) fasta scores: E(): 0%2C85.9%25 id in 256 aa. Similar to YPO1848 (50.4%25 identity in 250 aa overlap)%2C YPO2514 (50.2%25 identity in 247 aa overlap) and YPO3254 (53.0%25 identity in 234 aa overlap);gbkey=CDS;gene=hisP;product=histidine transport ATP-binding protein HisP;protein_id=CAL21396.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3111509	3112102	.	+	.	ID=id6622;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 216.80%2C E-value 3.2e-61;gbkey=misc_feature;gene=hisP;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	3111530	3111553	.	+	.	ID=id6623;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=hisP;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3111875	3111919	.	+	.	ID=id6624;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=hisP;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	3112316	3113224	.	-	.	ID=gene2749;Name=YPO2778;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2778
AL590842.1	EMBL	CDS	3112316	3113224	.	-	0	ID=cds2706;Parent=gene2749;Dbxref=GOA:Q0WDB3,InterPro:IPR001509,InterPro:IPR010099,InterPro:IPR013549,InterPro:IPR016040,UniProtKB/TrEMBL:Q0WDB3,NCBI_GP:CAL21397.1;Name=CAL21397.1;Note=Similar to Escherichia coli hypothetical protein YfcH SW:YFCH_ECOLI (P77775) (297 aa) fasta scores: E(): 0%2C68.8%25 id in 298 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA4656 TR:AAG08043 (EMBL:AE004879) (305 aa) fasta scores: E(): 0%2C 49.3%25 id in 298 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004879;product=conserved hypothetical protein;protein_id=CAL21397.1;transl_table=11
AL590842.1	EMBL	gene	3113572	3114270	.	+	.	ID=gene2750;Name=YPO2779;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2779
AL590842.1	EMBL	CDS	3113572	3114270	.	+	0	ID=cds2707;Parent=gene2750;Dbxref=InterPro:IPR001633,UniProtKB/TrEMBL:Q7CJA0,NCBI_GP:CAL21398.1;Name=CAL21398.1;Note=Similar to internal region of Acetobacter xylinum c-di-GMP phosphodiesterase A PdeA3 TR:O87378 (EMBL:AF052519) (740 aa) fasta scores: E(): 0.0053%2C 24.7%25 id in 223 aa%2C and to the full length Escherichia coli hypothetical protein YdiV SW:YDIV_ECOLI (P76204) (237 aa) fasta scores: E(): 1.2e-14%2C 28.0%25 id in 225 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF052519;product=conserved hypothetical protein;protein_id=CAL21398.1;transl_table=11
AL590842.1	EMBL	gene	3114471	3115046	.	+	.	ID=gene2751;Name=YPO2780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2780
AL590842.1	EMBL	CDS	3114471	3115046	.	+	0	ID=cds2708;Parent=gene2751;Dbxref=InterPro:IPR000979,InterPro:IPR020935,InterPro:IPR024654,InterPro:IPR029052,UniProtKB/TrEMBL:Q0WDB1,NCBI_GP:CAL21399.1;Name=CAL21399.1;Note=Similar to Escherichia coli hypothetical protein YfcE SW:YFCE_ECOLI (P76495) (184 aa) fasta scores: E(): 1.3e-30%2C 63.2%25 id in 171 aa%2C and to Vibrio cholerae hypothetical protein VC0981 TR:Q9KTC2 (EMBL:AE004179) (189 aa) fasta scores: E(): 3.5e-25%2C 51.8%25 id in 170 aa. Contains a 2xPAAVAESLNAYK between repeat codons 48..71.;gbkey=CDS;inference=similar to sequence:INSDC:AE004179;product=conserved hypothetical protein;protein_id=CAL21399.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3114477	3115022	.	+	.	ID=id6625;Note=Pfam match to entry PF01143 UPF0025%2C Uncharacterized protein family UPF0025%2C score 134.10%2C E-value 2.5e-36;gbkey=misc_feature;inference=protein motif:PF01143
AL590842.1	EMBL	sequence_feature	3114852	3114926	.	+	.	ID=id6626;Note=PS01269 Uncharacterized protein family UPF0025 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01269
AL590842.1	EMBL	repeat_region	3114612	3114683	.	+	.	ID=id6627;Note=repeat region containing 2xcctgcagcggtggcggagtctcttaatgcctacaaa repeat;gbkey=repeat_region
AL590842.1	EMBL	gene	3115268	3115816	.	+	.	ID=gene2752;Name=YPO2781;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2781
AL590842.1	EMBL	CDS	3115268	3115816	.	+	0	ID=cds2709;Parent=gene2752;Dbxref=GOA:Q8ZD12,InterPro:IPR000086,InterPro:IPR015797,InterPro:IPR024195,NCBI_GP:CAL21400.1;Name=CAL21400.1;Note=Similar to Escherichia coli putative regulator TR:P76494 (EMBL:AE000319) (180 aa) fasta scores: E(): 0%2C79.7%25 id in 172 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA4841 TR:AAG08226 (EMBL:AE004897) (178 aa) fasta scores: E(): 8.3e-23%2C 45.7%25 id in 162 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004897;product=conserved hypothetical protein;protein_id=CAL21400.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3115376	3115765	.	+	.	ID=id6628;Note=Pfam match to entry PF00293 mutT%2C Bacterial mutT protein%2C score 87.30%2C E-value 3.1e-22;gbkey=misc_feature;inference=protein motif:PF00293
AL590842.1	EMBL	gene	3115933	3117189	.	-	.	ID=gene2753;Name=YPO2782;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2782
AL590842.1	EMBL	CDS	3115933	3117189	.	-	0	ID=cds2710;Parent=gene2753;Dbxref=GOA:Q7CJ99,InterPro:IPR004703,UniProtKB/TrEMBL:Q7CJ99,NCBI_GP:CAL21401.1;Name=CAL21401.1;Note=Similar to Bacillus halodurans hypothetical protein BH0223 TR:Q9KG89 (EMBL:AP001507) (432 aa) fasta scores: E(): 0%2C 39.3%25 id in 422 aa%2C and to N-terminal region of Streptomyces coelicolor putative integral membrane protein SCJ21.17C TR:Q9S1Z0 (EMBL:AL109747) (516 aa) fasta scores: E(): 0%2C 48.2%25 id in 434 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001507;product=putative membrane protein;protein_id=CAL21401.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3116014	3116079	.	-	.	ID=id6629;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3116101	3116166	.	-	.	ID=id6630;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3116179	3116244	.	-	.	ID=id6631;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3116368	3116424	.	-	.	ID=id6632;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3116455	3116520	.	-	.	ID=id6633;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3116584	3116649	.	-	.	ID=id6634;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3116680	3116745	.	-	.	ID=id6635;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3116761	3116826	.	-	.	ID=id6636;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3116839	3116895	.	-	.	ID=id6637;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3117001	3117057	.	-	.	ID=id6638;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3117103	3117168	.	-	.	ID=id6639;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	repeat_region	3117258	3118572	.	+	.	ID=id6640;Note=insertion sequence:IS285;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	3117258	3117286	.	+	.	ID=id6641;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	3117329	3118537	.	+	.	ID=gene2754;Name=y1062;gbkey=Gene;gene=y1062;gene_biotype=protein_coding;gene_synonym=ypmt1.80C;locus_tag=YPO2783
AL590842.1	EMBL	CDS	3117329	3118537	.	+	0	ID=cds2711;Parent=gene2754;Dbxref=GOA:O68779,InterPro:IPR001207,UniProtKB/TrEMBL:O68779,NCBI_GP:CAL21402.1;Name=CAL21402.1;Note=Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa.;gbkey=CDS;gene=y1062;inference=similar to sequence:INSDC:AF053947;product=transposase for the IS285 insertion element;protein_id=CAL21402.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3117329	3118465	.	+	.	ID=id6642;Note=Pfam match to entry PF00872 Transpo_mutator%2CTransposase%2C Mutator family%2C score 430.40%2C E-value 1.6e-125;gbkey=misc_feature;gene=y1062;inference=protein motif:PF00872
AL590842.1	EMBL	sequence_feature	3118022	3118096	.	+	.	ID=id6643;Note=PS01007 Transposases%2C Mutator family%2C signature.;gbkey=misc_feature;gene=y1062;inference=protein motif:ProSite:PS01007
AL590842.1	EMBL	INVERTED	3118544	3118572	.	-	.	ID=id6644;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	pseudogene	3118574	3120100	.	+	.	ID=gene2755;Name=pbpC;gbkey=Gene;gene=pbpC;gene_biotype=pseudogene;locus_tag=YPO2784;pseudo=true
AL590842.1	EMBL	CDS	3118574	3120100	.	+	0	ID=cds2712;Parent=gene2755;Note=Similar to Escherichia coli penicillin-binding protein 1C PbpC TR:P76988 (EMBL:U88571) (650 aa) fasta scores: E(): 0%2C 30.6%25 id in 509 aa%2C and to Xylella fastidiosa bifunctional penicillin binding protein 1C XF2235 TR:Q9PBA9 (EMBL:AE004036) (796 aa) fasta scores: E(): 0%2C 30.3%25 id in 525 aa. Truncation of the CDS due to the insertion of IS235 upstream.;gbkey=CDS;gene=pbpC;inference=similar to sequence:INSDC:U88571;product=penicillin-binding protein 1C (partial);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	3118697	3119461	.	+	.	ID=id6645;Note=Pfam match to entry PF00905 Transpeptidase%2CPenicillin binding protein transpeptidase domain%2C score -25.10%2C E-value 1.5e-05;gbkey=misc_feature;gene=pbpC;inference=protein motif:PF00905
AL590842.1	EMBL	gene	3120316	3120561	.	-	.	ID=gene2756;Name=nlp;gbkey=Gene;gene=nlp;gene_biotype=protein_coding;gene_synonym=sfs7,sfsB;locus_tag=YPO2785
AL590842.1	EMBL	CDS	3120316	3120561	.	-	0	ID=cds2713;Parent=gene2756;Dbxref=GOA:Q0WDA7,InterPro:IPR010982,UniProtKB/TrEMBL:Q0WDA7,NCBI_GP:CAL21404.1;Name=CAL21404.1;Note=Similar to Bacteriophage Mu DNA-binding protein Ner SW:NER_BPMU (P06020) (74 aa) fasta scores: E(): 3.4e-13%2C60.9%25 id in 64 aa%2C and to Escherichia coli sugar fermentation stimulation protein B Nlp SW:SFSB_ECOLI (P18837) (92 aa) fasta scores: E(): 3e-16%2C 67.2%25 id in 67 aa%2C and to Photorhabdus luminescens possible DNA-binding protein Pln TR:Q9RG38 (EMBL:AF157489) (70 aa) fasta scores: E(): 9.2e-18%2C 66.7%25 id in 69 aa;gbkey=CDS;gene=nlp;inference=similar to sequence:INSDC:AF157489;product=putative DNA-binding protein;protein_id=CAL21404.1;transl_table=11
AL590842.1	EMBL	gene	3121234	3121815	.	+	.	ID=gene2757;Name=YPO2788;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2788
AL590842.1	EMBL	CDS	3121234	3121815	.	+	0	ID=cds2714;Parent=gene2757;Dbxref=UniProtKB/TrEMBL:Q7CJW9,NCBI_GP:CAL21405.1;Name=CAL21405.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21405.1;transl_table=11
AL590842.1	EMBL	gene	3122083	3122484	.	+	.	ID=gene2758;Name=YPO2790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2790
AL590842.1	EMBL	CDS	3122083	3122484	.	+	0	ID=cds2715;Parent=gene2758;Dbxref=InterPro:IPR010665,UniProtKB/TrEMBL:Q0WDA5,NCBI_GP:CAL21406.1;Name=CAL21406.1;Note=Doubtful CDS. Poor database matches%2C similar to internal region of Carabus fraterculus NADH dehydrogenase subunit 5 TR:BAB17812 (EMBL:AB050761) (355 aa) fasta scores: E(): 0.75%2C 25.9%25 id in 147 aa. Similar to YPO2792 (74.6%25 identity in 126 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AB050761;product=putative membrane protein;protein_id=CAL21406.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3122119	3122187	.	+	.	ID=id6646;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3122215	3122283	.	+	.	ID=id6647;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3122320	3122388	.	+	.	ID=id6648;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3122738	3123118	.	+	.	ID=gene2759;Name=YPO2792;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2792
AL590842.1	EMBL	CDS	3122738	3123118	.	+	0	ID=cds2716;Parent=gene2759;Dbxref=InterPro:IPR010665,UniProtKB/TrEMBL:Q0WDA4,NCBI_GP:CAL21407.1;Name=CAL21407.1;Note=Doubtful CDS. No significant database matches to the full length CDS. Similar to Saccharomyces cerevisiae chitin synthase 1 SW:CHS1_YEAST (P08004) (1131 aa) fasta scores: E(): 2.1%2C 22.8%25 id in 92 aa. Similar to YPO2790 (74.6%25 identity in 126 aa overlap);gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL21407.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3122741	3122794	.	+	.	ID=id6649;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3122837	3122905	.	+	.	ID=id6650;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3122966	3123034	.	+	.	ID=id6651;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3123130	3123702	.	-	.	ID=gene2760;Name=YPO2793;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2793
AL590842.1	EMBL	CDS	3123130	3123702	.	-	0	ID=cds2717;Parent=gene2760;Dbxref=InterPro:IPR008514,UniProtKB/TrEMBL:Q7CJX0,NCBI_GP:CAL21408.1;Name=CAL21408.1;Note=Similar to N-terminus of Escherichia coli hypothetical protein YhhZ SW:YHHZ_ECOLI (P46855) (392 aa) fasta scores: E(): 3e-15%2C 39.3%25 id in 168 aa%2C and to Pseudomonas aeruginosa secreted protein Hcp TR:AAG03652 (EMBL:AE004939) (172 aa) fasta scores: E(): 0.00027%2C 39.8%25 id in 171 aa. Similar to YPO2962 (64.8%25 identity in 159 aa overlap)%2C YPO2868 (59.1%25 identity in 159 aa overlap) and YPO1872 (57.9%25 identity in 114 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AE004939;product=putative membrane protein;protein_id=CAL21408.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3123154	3123219	.	-	.	ID=id6652;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3123726	3123977	.	-	.	ID=gene2761;Name=YPO2794;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2794
AL590842.1	EMBL	CDS	3123726	3123977	.	-	0	ID=cds2718;Parent=gene2761;Dbxref=UniProtKB/TrEMBL:Q7CJX1,NCBI_GP:CAL21409.1;Name=CAL21409.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21409.1;transl_table=11
AL590842.1	EMBL	gene	3124016	3124255	.	-	.	ID=gene2762;Name=YPO2795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2795
AL590842.1	EMBL	CDS	3124016	3124255	.	-	0	ID=cds2719;Parent=gene2762;Dbxref=UniProtKB/TrEMBL:Q74VW9,NCBI_GP:CAL21410.1;Name=CAL21410.1;Note=Weakly similar to Methanococcus jannaschii hypothetical protein MJ0919 SW:Y919_METJA (Q58329) (149 aa) fasta scores: E(): 7.5%2C 32.3%25 id in 65 aa;gbkey=CDS;product=hypothetical protein;protein_id=CAL21410.1;transl_table=11
AL590842.1	EMBL	gene	3125064	3126980	.	+	.	ID=gene2763;Name=yapC;gbkey=Gene;gene=yapC;gene_biotype=protein_coding;locus_tag=YPO2796
AL590842.1	EMBL	CDS	3125064	3126980	.	+	0	ID=cds2720;Parent=gene2763;Dbxref=GOA:Q9F290,InterPro:IPR003991,InterPro:IPR004899,InterPro:IPR005546,InterPro:IPR006315,InterPro:IPR011050,InterPro:IPR012332,UniProtKB/TrEMBL:Q9F290,NCBI_GP:CAL21411.1;Name=CAL21411.1;Note=Previously sequenced as Yersinia pestis putative autotransporter protein YapC TR:CAC14222 (EMBL:AJ277626) (638 aa) fasta scores: E(): 0%2C 100.0%25 id in 638 aa%2C Similar to Escherichia coli invasion locus B protein TibA TR:Q9XD84 (EMBL:AF109215) (989 aa) fasta scores: E(): 0%2C 31.7%25 id in 666 aa;gbkey=CDS;gene=yapC;inference=similar to sequence:INSDC:AJ277626;product=putaive autotransporter protein;protein_id=CAL21411.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3125076	3125135	.	+	.	ID=id6653;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=yapC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3127515	3128096	.	+	.	ID=gene2764;Name=YPO2797;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2797
AL590842.1	EMBL	CDS	3127515	3128096	.	+	0	ID=cds2721;Parent=gene2764;Dbxref=InterPro:IPR021561,UniProtKB/TrEMBL:Q74VW7,NCBI_GP:CAL21412.1;Name=CAL21412.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21412.1;transl_table=11
AL590842.1	EMBL	gene	3128111	3128461	.	-	.	ID=gene2765;Name=YPO2798;end_range=3128461,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2798;partial=true
AL590842.1	EMBL	CDS	3128111	3128461	.	-	0	ID=cds2722;Parent=gene2765;Dbxref=InterPro:IPR003347,UniProtKB/TrEMBL:Q0WD98,NCBI_GP:CAL21413.1;Name=CAL21413.1;Note=Similar to the N-terminal regions of Escherichia coli hypothetical protein YcfD SW:YCFD_ECOLI (P27431) (373 aa) fasta scores: E(): 1.7e-25%2C 55.3%25 id in 114 aa%2C and Xylella fastidiosa hypothetical protein XF1552 TR:Q9PD27 (EMBL:AE003985) (422 aa) fasta scores: E(): 2.3%2C 36.2%25 id in 47 aa. Truncation of the CDS by the insertion of upstream IS285.%3B~was marked partial;end_range=3128461,.;gbkey=CDS;inference=similar to sequence:INSDC:AE003985;partial=true;product=conserved hypothetical protein (partial);protein_id=CAL21413.1;transl_table=11
AL590842.1	EMBL	repeat_region	3128463	3129777	.	-	.	ID=id6654;Note=insertion sequence:IS285;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	3128463	3128491	.	+	.	ID=id6655;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	3128498	3129706	.	-	.	ID=gene2766;Name=y1062;gbkey=Gene;gene=y1062;gene_biotype=protein_coding;gene_synonym=ypmt1.80C;locus_tag=YPO2799
AL590842.1	EMBL	CDS	3128498	3129706	.	-	0	ID=cds2723;Parent=gene2766;Dbxref=GOA:O68779,InterPro:IPR001207,UniProtKB/TrEMBL:O68779,NCBI_GP:CAL21414.1;Name=CAL21414.1;Note=Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa.;gbkey=CDS;gene=y1062;inference=similar to sequence:INSDC:AF053947;product=transposase for the IS285 insertion element;protein_id=CAL21414.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3128570	3129706	.	-	.	ID=id6656;Note=Pfam match to entry PF00872 Transpo_mutator%2CTransposase%2C Mutator family%2C score 430.40%2C E-value 1.6e-125;gbkey=misc_feature;gene=y1062;inference=protein motif:PF00872
AL590842.1	EMBL	sequence_feature	3128939	3129013	.	-	.	ID=id6657;Note=PS01007 Transposases%2C Mutator family%2C signature.;gbkey=misc_feature;gene=y1062;inference=protein motif:ProSite:PS01007
AL590842.1	EMBL	INVERTED	3129749	3129777	.	-	.	ID=id6658;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	3130158	3132365	.	+	.	ID=gene2767;Name=YPO2801;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2801
AL590842.1	EMBL	CDS	3130158	3132365	.	+	0	ID=cds2724;Parent=gene2767;Dbxref=InterPro:IPR018677,InterPro:IPR025513,UniProtKB/TrEMBL:Q7CJX4,NCBI_GP:CAL21415.1;Name=CAL21415.1;Note=No significant database matches to the full length CDS. Similar to N-terminal region of Herpetosiphon aurantiacus methyltransferase and restriction endonuclease TR:Q47967 (EMBL:X55138) (336 aa) fasta scores: E(): 5.6e-18%2C 28.1%25 id in 359 aa;gbkey=CDS;inference=similar to sequence:INSDC:X55138;product=putative membrane protein;protein_id=CAL21415.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3130317	3130385	.	+	.	ID=id6659;Note=one of 21 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3130413	3130481	.	+	.	ID=id6660;Note=one of 21 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3130500	3130556	.	+	.	ID=id6661;Note=one of 21 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3130584	3130628	.	+	.	ID=id6662;Note=one of 21 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3130647	3130715	.	+	.	ID=id6663;Note=one of 21 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3130743	3130811	.	+	.	ID=id6664;Note=one of 21 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3130878	3130946	.	+	.	ID=id6665;Note=one of 21 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3130959	3131012	.	+	.	ID=id6666;Note=one of 21 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3131031	3131099	.	+	.	ID=id6667;Note=one of 21 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3131127	3131195	.	+	.	ID=id6668;Note=one of 21 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3131355	3131423	.	+	.	ID=id6669;Note=one of 21 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3131451	3131507	.	+	.	ID=id6670;Note=one of 21 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3131532	3131591	.	+	.	ID=id6671;Note=one of 21 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3131619	3131672	.	+	.	ID=id6672;Note=one of 21 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3131691	3131759	.	+	.	ID=id6673;Note=one of 21 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3131772	3131840	.	+	.	ID=id6674;Note=one of 21 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3131877	3131945	.	+	.	ID=id6675;Note=one of 21 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3132003	3132062	.	+	.	ID=id6676;Note=one of 21 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3132081	3132149	.	+	.	ID=id6677;Note=one of 21 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3132186	3132254	.	+	.	ID=id6678;Note=one of 21 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3132273	3132341	.	+	.	ID=id6679;Note=one of 21 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3132358	3132888	.	+	.	ID=gene2768;Name=YPO2802;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2802
AL590842.1	EMBL	CDS	3132358	3132888	.	+	0	ID=cds2725;Parent=gene2768;Dbxref=InterPro:IPR025833,UniProtKB/TrEMBL:Q7CJX5,NCBI_GP:CAL21416.1;Name=CAL21416.1;Note=No significant database matches;gbkey=CDS;product=putative membrane protein;protein_id=CAL21416.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3132376	3132429	.	+	.	ID=id6680;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3133047	3135428	.	+	.	ID=gene2769;Name=bglB;gbkey=Gene;gene=bglB;gene_biotype=protein_coding;locus_tag=YPO2803
AL590842.1	EMBL	CDS	3133047	3135428	.	+	0	ID=cds2726;Parent=gene2769;Dbxref=GOA:Q7CJX6,InterPro:IPR001764,InterPro:IPR002772,InterPro:IPR017853,InterPro:IPR019800,InterPro:IPR026891,InterPro:IPR026892,UniProtKB/TrEMBL:Q7CJX6,NCBI_GP:CAL21417.1;Name=CAL21417.1;Note=Similar to Thermotoga neapolitana beta-glucosidase BglB TR:Q60038 (EMBL:Z77856) (720 aa) fasta scores: E(): 0%2C40.5%25 id in 719 aa%2C and to Thermotoga maritima possible beta-glucosidase TM0025 TR:Q9WXN2 (EMBL:AE001690) (721 aa) fasta scores: E(): 0%2C 41.7%25 id in 729 aa;gbkey=CDS;gene=bglB;inference=similar to sequence:INSDC:Z77856;product=putative beta-glucosidase;protein_id=CAL21417.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3133125	3133979	.	+	.	ID=id6681;Note=Pfam match to entry PF00933 Glyco_hydro_3%2C Glycosyl hydrolase family 3 N terminal domain%2C score 347.10%2C E-value 1.9e-100;gbkey=misc_feature;gene=bglB;inference=protein motif:PF00933
AL590842.1	EMBL	sequence_feature	3133791	3133844	.	+	.	ID=id6682;Note=PS00775 Glycosyl hydrolases family 3 active site.;gbkey=misc_feature;gene=bglB;inference=protein motif:ProSite:PS00775
AL590842.1	EMBL	sequence_feature	3134073	3134594	.	+	.	ID=id6683;Note=Pfam match to entry PF01915 Glyco_hydro_3_C%2CGlycosyl hydrolase family 3 C terminal domain%2C score 118.50%2C E-value 1.3e-31;gbkey=misc_feature;gene=bglB;inference=protein motif:PF01915
AL590842.1	EMBL	gene	3135507	3137135	.	-	.	ID=gene2770;Name=YPO2804;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2804
AL590842.1	EMBL	CDS	3135507	3137135	.	-	0	ID=cds2727;Parent=gene2770;Dbxref=UniProtKB/TrEMBL:Q7CJX7,NCBI_GP:CAL21418.1;Name=CAL21418.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21418.1;transl_table=11
AL590842.1	EMBL	gene	3137566	3138459	.	+	.	ID=gene2771;Name=YPO2805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2805
AL590842.1	EMBL	CDS	3137566	3138459	.	+	0	ID=cds2728;Parent=gene2771;Dbxref=GOA:Q7CJX8,InterPro:IPR001395,InterPro:IPR018170,InterPro:IPR020471,InterPro:IPR023210,PDB:4MHB,UniProtKB/TrEMBL:Q7CJX8,NCBI_GP:CAL21419.1;Name=CAL21419.1;Note=Similar to Corynebacterium sp 2%2C5-diketo-D-gluconic acid reductase TR:P06632 (EMBL:M12799) (278 aa) fasta scores: E(): 0%2C 45.0%25 id in 262 aa%2C and to Thermotoga maritima aldo/keto reductase family oxidoreductase TM1009 TR:Q9X0A2 (EMBL:AE001762) (286 aa) fasta scores: E(): 0%2C60.1%25 id in 283 aa;gbkey=CDS;inference=similar to sequence:INSDC:M12799;product=putative aldo/keto reductase;protein_id=CAL21419.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3137623	3138393	.	+	.	ID=id6684;Note=Pfam match to entry PF00248 aldo_ket_red%2C Aldo/keto reductase family%2C score 397.20%2C E-value 1.6e-115;gbkey=misc_feature;inference=protein motif:PF00248
AL590842.1	EMBL	sequence_feature	3137722	3137775	.	+	.	ID=id6685;Note=PS00798 Aldo/keto reductase family signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS00798
AL590842.1	EMBL	sequence_feature	3137965	3138018	.	+	.	ID=id6686;Note=PS00062 Aldo/keto reductase family signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00062
AL590842.1	EMBL	sequence_feature	3138283	3138330	.	+	.	ID=id6687;Note=PS00063 Aldo/keto reductase family putative active site signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00063
AL590842.1	EMBL	gene	3138485	3139474	.	+	.	ID=gene2772;Name=YPO2806;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2806
AL590842.1	EMBL	CDS	3138485	3139474	.	+	0	ID=cds2729;Parent=gene2772;Dbxref=InterPro:IPR001395,InterPro:IPR023210,UniProtKB/TrEMBL:Q0WD91,NCBI_GP:CAL21420.1;Name=CAL21420.1;Note=Similar to Thermotoga maritima aldo/keto reductase family oxidoreductase TM1006 TR:Q9X0A1 (EMBL:AE001762) (333 aa) fasta scores: E(): 0%2C 62.0%25 id in 326 aa%2C and to Helicobacter pylori putative aldo-keto reductase HP1193 TR:O25804 (EMBL:AE000625) (329 aa) fasta scores: E(): 0%2C51.5%25 id in 332 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE001762;product=putative aldo/keto reductase;protein_id=CAL21420.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3138635	3138697	.	+	.	ID=id6688;Note=Pfam match to entry PF00248 aldo_ket_red%2C Aldo/keto reductase family%2C score 3.50%2C E-value 5.3;gbkey=misc_feature;inference=protein motif:PF00248
AL590842.1	EMBL	sequence_feature	3138779	3138859	.	+	.	ID=id6689;Note=Pfam match to entry PF00248 aldo_ket_red%2C Aldo/keto reductase family%2C score 15.00%2C E-value 0.0029;gbkey=misc_feature;inference=protein motif:PF00248
AL590842.1	EMBL	sequence_feature	3139235	3139390	.	+	.	ID=id6690;Note=Pfam match to entry PF00248 aldo_ket_red%2C Aldo/keto reductase family%2C score 27.50%2C E-value 7.8e-07;gbkey=misc_feature;inference=protein motif:PF00248
AL590842.1	EMBL	gene	3139529	3140422	.	-	.	ID=gene2773;Name=ptxR;gbkey=Gene;gene=ptxR;gene_biotype=protein_coding;locus_tag=YPO2807
AL590842.1	EMBL	CDS	3139529	3140422	.	-	0	ID=cds2730;Parent=gene2773;Dbxref=GOA:Q7CJX9,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CJX9,NCBI_GP:CAL21421.1;Name=CAL21421.1;Note=Similar to Pseudomonas aeruginosa exotoxin A positive transcriptional regulator PtxR TR:AAG05646 (EMBL:U35068) (312 aa) fasta scores: E(): 4.1e-22%2C 31.6%25 id in 294 aa%2C and to Xylella fastidiosa transcriptional regulator XF1752 TR:Q9PCM6 (EMBL:AE003998) (324 aa) fasta scores: E(): 0%2C 52.9%25 id in 297 aa;gbkey=CDS;gene=ptxR;inference=similar to sequence:INSDC:U35068;product=putative LysR-family transcriptional regulatory protein;protein_id=CAL21421.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3139988	3140407	.	-	.	ID=id6691;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 135.90%2C E-value 7.3e-37;gbkey=misc_feature;gene=ptxR;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	3140273	3140365	.	-	.	ID=id6692;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature.;gbkey=misc_feature;gene=ptxR;inference=protein motif:ProSite:PS00044
AL590842.1	EMBL	sequence_feature	3140303	3140368	.	-	.	ID=id6693;Note=Predicted helix-turn-helix motif with score 2110 (+6.37 SD) at aa 19-40%2C sequence RSFTKAAGKLGVSQSALSHAIK;gbkey=misc_feature;gene=ptxR
AL590842.1	EMBL	repeat_region	3140430	3142383	.	+	.	ID=id6694;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	3140430	3140457	.	+	.	ID=id6695;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	3140516	3141538	.	+	.	ID=gene2774;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO2808
AL590842.1	EMBL	CDS	3140516	3141538	.	+	0	ID=cds2731;Parent=gene2774;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL21422.1;Name=CAL21422.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL21422.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3140540	3140623	.	+	.	ID=id6696;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	sequence_feature	3140567	3140632	.	+	.	ID=id6697;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	3140861	3141394	.	+	.	ID=id6698;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	gene	3141535	3142317	.	+	.	ID=gene2775;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO2809
AL590842.1	EMBL	CDS	3141535	3142317	.	+	0	ID=cds2732;Parent=gene2775;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL21423.1;Name=CAL21423.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL21423.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3141703	3142242	.	+	.	ID=id6699;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	3141862	3141885	.	+	.	ID=id6700;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	INVERTED	3142356	3142383	.	-	.	ID=id6701;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	3142684	3142989	.	-	.	ID=gene2776;Name=YPO2811;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2811
AL590842.1	EMBL	CDS	3142684	3142989	.	-	0	ID=cds2733;Parent=gene2776;Dbxref=UniProtKB/TrEMBL:Q74WJ6,NCBI_GP:CAL21424.1;Name=CAL21424.1;Note=No significant database matches;gbkey=CDS;product=putative membrane protein;protein_id=CAL21424.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3142888	3142938	.	-	.	ID=id6702;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3143086	3143457	.	-	.	ID=gene2777;Name=YPO2812;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2812
AL590842.1	EMBL	CDS	3143086	3143457	.	-	0	ID=cds2734;Parent=gene2777;Dbxref=UniProtKB/TrEMBL:Q0WD86,NCBI_GP:CAL21425.1;Name=CAL21425.1;Note=Doubtful CDS%2C no significant database matches;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL21425.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3143092	3143157	.	-	.	ID=id6703;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3143332	3143397	.	-	.	ID=id6704;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3143469	3144788	.	-	.	ID=gene2778;Name=ynbD;gbkey=Gene;gene=ynbD;gene_biotype=protein_coding;locus_tag=YPO2813
AL590842.1	EMBL	CDS	3143469	3144788	.	-	0	ID=cds2735;Parent=gene2778;Dbxref=GOA:Q7CJY2,InterPro:IPR000326,InterPro:IPR000340,InterPro:IPR000387,InterPro:IPR024950,InterPro:IPR029021,UniProtKB/TrEMBL:Q7CJY2,NCBI_GP:CAL21426.1;Name=CAL21426.1;Note=Similar to Escherichia coli hypothetical protein YnbD SW:YNBD_ECOLI (P76093) (430 aa) fasta scores: E(): 0%2C49.6%25 id in 415 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA2539 TR:AAG05927 (EMBL:AE004681) (437 aa) fasta scores: E(): 0%2C 44.0%25 id in 432 aa;gbkey=CDS;gene=ynbD;inference=similar to sequence:INSDC:AE004681;product=putative dual specificity phosphatase;protein_id=CAL21426.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3143490	3143885	.	-	.	ID=id6705;Note=Pfam match to entry PF00782 DSPc%2C Dual specificity phosphatase%2C catalytic domain%2C score 43.60%2C E-value 4.5e-09;gbkey=misc_feature;gene=ynbD;inference=protein motif:PF00782
AL590842.1	EMBL	sequence_feature	3144051	3144116	.	-	.	ID=id6706;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ynbD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3144177	3144233	.	-	.	ID=id6707;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ynbD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3144246	3144296	.	-	.	ID=id6708;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ynbD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3144333	3144383	.	-	.	ID=id6709;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ynbD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3144444	3144509	.	-	.	ID=id6710;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ynbD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3144480	3144527	.	-	.	ID=id6711;Note=PS00391 Sodium and potassium ATPases beta subunits signature 2.;gbkey=misc_feature;gene=ynbD;inference=protein motif:ProSite:PS00391
AL590842.1	EMBL	sequence_feature	3144549	3144614	.	-	.	ID=id6712;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ynbD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3144684	3144749	.	-	.	ID=id6713;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ynbD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3144781	3146544	.	-	.	ID=gene2779;Name=YPO2814;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2814
AL590842.1	EMBL	CDS	3144781	3146544	.	-	0	ID=cds2736;Parent=gene2779;Dbxref=InterPro:IPR022742,InterPro:IPR022744,InterPro:IPR029058,InterPro:IPR029063,UniProtKB/TrEMBL:Q0WD84,NCBI_GP:CAL21427.1;Name=CAL21427.1;Note=N-terminal region similar to Mus musculus monoglyceride lipase MglL TR:O35678 (EMBL:AJ001118) (303 aa) fasta scores: E(): 7e-07%2C 26.5%25 id in 253 aa%2C and to Escherichia coli hypothetical protein YnbC SW:YNBC_ECOLI (P76092) (585 aa) fasta scores: E(): 0%2C 65.4%25 id in 581 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ001118;product=conserved hypothetical protein;protein_id=CAL21427.1;transl_table=11
AL590842.1	EMBL	gene	3146541	3147173	.	-	.	ID=gene2780;Name=YPO2815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2815
AL590842.1	EMBL	CDS	3146541	3147173	.	-	0	ID=cds2737;Parent=gene2780;Dbxref=GOA:Q7CJY3,InterPro:IPR002123,UniProtKB/TrEMBL:Q7CJY3,NCBI_GP:CAL21428.1;Name=CAL21428.1;Note=Internal region of the CDS is similar to an internal region of Brassica napus lysophosphatidic acid acyltransferase ACT2 TR:Q9LLY4 (EMBL:AF111161) (344 aa) fasta scores: E(): 1.1e-08%2C 29.2%25 id in 144 aa. Full length CDS is similar to Vibrio cholerae hypothetical protein VC1937 TR:Q9KQR1 (EMBL:AE004269) (223 aa) fasta scores: E(): 0%2C 47.9%25 id in 211 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF111161;product=putative acyltransferase;protein_id=CAL21428.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3146559	3147089	.	-	.	ID=id6714;Note=Pfam match to entry PF01553 Acyltransferase%2CAcyltransferase%2C score 60.50%2C E-value 3.7e-14;gbkey=misc_feature;inference=protein motif:PF01553
AL590842.1	EMBL	sequence_feature	3147102	3147152	.	-	.	ID=id6715;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3147183	3148112	.	-	.	ID=gene2781;Name=ynbB;gbkey=Gene;gene=ynbB;gene_biotype=protein_coding;locus_tag=YPO2816
AL590842.1	EMBL	CDS	3147183	3148112	.	-	0	ID=cds2738;Parent=gene2781;Dbxref=GOA:Q7CJY4,InterPro:IPR000374,UniProtKB/TrEMBL:Q7CJY4,NCBI_GP:CAL21429.1;Name=CAL21429.1;Note=Similar to Escherichia coli phosphatidate cytidylyltransferase CdsA SW:CDSA_ECOLI (P06466) (249 aa) fasta scores: E(): 1.5e-14%2C 30.2%25 id in 245 aa%2C and to Escherichia coli hypothetical protein YnbB SW:YNBB_ECOLI (P76091) (298 aa) fasta scores: E(): 0%2C 57.1%25 id in 296 aa;gbkey=CDS;gene=ynbB;inference=protein motif:TMHMM:2.0;product=putative phosphatidate cytidylyltransferase;protein_id=CAL21429.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3147189	3148040	.	-	.	ID=id6716;Note=Pfam match to entry PF01148 Cytidylyltrans%2CPhosphatidate cytidylyltransferase%2C score 180.20%2C E-value 3.2e-50;gbkey=misc_feature;gene=ynbB;inference=protein motif:PF01148
AL590842.1	EMBL	sequence_feature	3147240	3147320	.	-	.	ID=id6717;Note=PS01315 Phosphatidate cytidylyltransferase signature.;gbkey=misc_feature;gene=ynbB;inference=protein motif:ProSite:PS01315
AL590842.1	EMBL	sequence_feature	3147318	3147383	.	-	.	ID=id6718;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ynbB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3147396	3147461	.	-	.	ID=id6719;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ynbB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3147519	3147584	.	-	.	ID=id6720;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ynbB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3147624	3147689	.	-	.	ID=id6721;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ynbB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3147729	3147794	.	-	.	ID=id6722;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ynbB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3147903	3147968	.	-	.	ID=id6723;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ynbB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3148032	3148097	.	-	.	ID=id6724;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ynbB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3148105	3148707	.	-	.	ID=gene2782;Name=YPO2817;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2817
AL590842.1	EMBL	CDS	3148105	3148707	.	-	0	ID=cds2739;Parent=gene2782;Dbxref=GOA:Q7CJY5,InterPro:IPR000462,UniProtKB/TrEMBL:Q7CJY5,NCBI_GP:CAL21430.1;Name=CAL21430.1;Note=Similar to Escherichia coli CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PgsA SW:PGSA_ECOLI (P06978) (181 aa) fasta scores: E(): 0.00091%2C 23.4%25 id in 175 aa%2C and to Escherichia coli hypothetical protein TR:P76090 (EMBL:AE000238) (203 aa) fasta scores: E(): 0%2C 55.9%25 id in 195 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE000238;product=putative CDP-alcohol phosphatidyltransferase;protein_id=CAL21430.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3148117	3148533	.	-	.	ID=id6725;Note=Pfam match to entry PF01066 CDP-OH_P_transf%2CCDP-alcohol phosphatidyltransferase%2C score -2.40%2C E-value 0.0015;gbkey=misc_feature;inference=protein motif:PF01066
AL590842.1	EMBL	sequence_feature	3148153	3148218	.	-	.	ID=id6726;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3148342	3148407	.	-	.	ID=id6727;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3148516	3148581	.	-	.	ID=id6728;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3148934	3149167	.	-	.	ID=gene2783;Name=YPO2818;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2818
AL590842.1	EMBL	CDS	3148934	3149167	.	-	0	ID=cds2740;Parent=gene2783;Dbxref=UniProtKB/TrEMBL:Q7CJY6,NCBI_GP:CAL21431.1;Name=CAL21431.1;Note=doubtful CDS with no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21431.1;transl_table=11
AL590842.1	EMBL	gene	3149504	3149803	.	+	.	ID=gene2784;Name=int;gbkey=Gene;gene=int;gene_biotype=protein_coding;locus_tag=YPO2819;partial=true;start_range=.,3149504
AL590842.1	EMBL	CDS	3149504	3149803	.	+	0	ID=cds2741;Parent=gene2784;Dbxref=GOA:Q0WD79,InterPro:IPR002104,InterPro:IPR011010,InterPro:IPR013762,UniProtKB/TrEMBL:Q0WD79,NCBI_GP:CAL21432.1;Name=CAL21432.1;Note=Similar to Bacteriophage P22 integrase Int SW:VINT_BPP22 (P04890) (387 aa) fasta scores: E(): 1.6e-29%2C73.3%25 id in 90 aa%2C and to Bacteriophage SfII integrase Int TR:O21941 (EMBL:AF021347) (205 aa) fasta scores: E(): 2.9e-28%2C 67.8%25 id in 90 aa%3B~was marked partial;gbkey=CDS;gene=int;inference=similar to sequence:INSDC:AF021347;partial=true;product=phage integrase (partial);protein_id=CAL21432.1;start_range=.,3149504;transl_table=11
AL590842.1	EMBL	gene	3149886	3150224	.	+	.	ID=gene2785;Name=YPO2820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2820
AL590842.1	EMBL	CDS	3149886	3150224	.	+	0	ID=cds2742;Parent=gene2785;Dbxref=UniProtKB/TrEMBL:Q74WK5,NCBI_GP:CAL21433.1;Name=CAL21433.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21433.1;transl_table=11
AL590842.1	EMBL	gene	3150510	3150857	.	+	.	ID=gene2786;Name=YPO2821;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2821
AL590842.1	EMBL	CDS	3150510	3150857	.	+	0	ID=cds2743;Parent=gene2786;Dbxref=UniProtKB/TrEMBL:Q0WD77,NCBI_GP:CAL21434.1;Name=CAL21434.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21434.1;transl_table=11
AL590842.1	EMBL	gene	3150971	3151171	.	+	.	ID=gene2787;Name=YPO2822;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2822
AL590842.1	EMBL	CDS	3150971	3151171	.	+	0	ID=cds2744;Parent=gene2787;Dbxref=UniProtKB/TrEMBL:Q74WK7,NCBI_GP:CAL21435.1;Name=CAL21435.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21435.1;transl_table=11
AL590842.1	EMBL	gene	3151430	3151612	.	+	.	ID=gene2788;Name=YPO2823;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2823
AL590842.1	EMBL	CDS	3151430	3151612	.	+	0	ID=cds2745;Parent=gene2788;Dbxref=UniProtKB/TrEMBL:Q74WK8,NCBI_GP:CAL21436.1;Name=CAL21436.1;Note=Similar to Escherichia coli prophage CP4-57 regulatory protein AlpA SW:ALPA_ECOLI (P33997) (70 aa) fasta scores: E(): 0.17%2C 29.7%25 id in 64 aa%2C and to Vibrio cholerae hypothetical transcriptional regulator VC0497 TR:Q9KUL8 (EMBL:AE004136) (66 aa) fasta scores: E(): 0.0096%2C 29.1%25 id in 55 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004136;product=putative regulatory protein;protein_id=CAL21436.1;transl_table=11
AL590842.1	EMBL	tRNA	3151676	3151752	.	-	.	ID=rna59;Note=tRNA Arg anticodon TCT%2C Cove score 94.70;gbkey=tRNA;product=tRNA-Arg
AL590842.1	EMBL	exon	3151676	3151752	.	-	.	ID=id6729;Parent=rna59;Note=tRNA Arg anticodon TCT%2C Cove score 94.70;gbkey=tRNA;product=tRNA-Arg
AL590842.1	EMBL	gene	3151967	3152833	.	+	.	ID=gene2789;Name=ads;gbkey=Gene;gene=ads;gene_biotype=protein_coding;gene_synonym=folD;locus_tag=YPO2824
AL590842.1	EMBL	CDS	3151967	3152833	.	+	0	ID=cds2746;Parent=gene2789;Dbxref=GOA:Q7CJY7,InterPro:IPR000672,InterPro:IPR016040,InterPro:IPR020630,InterPro:IPR020631,InterPro:IPR020867,NCBI_GP:CAL21437.1;Name=CAL21437.1;Note=Similar to Escherichia coli methylenetetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclohydrolase bifunctional protein FolD SW:FOLD_ECOLI (P24186) (287 aa) fasta scores: E(): 0%2C 86.6%25 id in 283 aa%2C and to Salmonella typhi methylenetetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclohydrolase bifunctional protein FolD SW:FOLD_SALTI (Q60006) (287 aa) fasta scores: E(): 0%2C 86.2%25 id in 283 aa;gbkey=CDS;gene=ads;product=putative FolD bifunctional protein;protein_id=CAL21437.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3151973	3151996	.	+	.	ID=id6730;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ads;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3152009	3152803	.	+	.	ID=id6731;Note=Pfam match to entry PF00763 THF_DHG_CYH%2CTetrahydrofolate dehydrogenase/cyclohydrolase%2C score 570.60%2C E-value 1e-167;gbkey=misc_feature;gene=ads;inference=protein motif:PF00763
AL590842.1	EMBL	sequence_feature	3152192	3152269	.	+	.	ID=id6732;Note=PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1.;gbkey=misc_feature;gene=ads;inference=protein motif:ProSite:PS00766
AL590842.1	EMBL	sequence_feature	3152744	3152770	.	+	.	ID=id6733;Note=PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2.;gbkey=misc_feature;gene=ads;inference=protein motif:ProSite:PS00767
AL590842.1	EMBL	sequence_feature	3152771	3152803	.	+	.	ID=id6734;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=ads;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	3152848	3153060	.	+	.	ID=gene2790;Name=YPO2825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2825
AL590842.1	EMBL	CDS	3152848	3153060	.	+	0	ID=cds2747;Parent=gene2790;Dbxref=GOA:Q7CJY8,InterPro:IPR002942,UniProtKB/TrEMBL:Q7CJY8,NCBI_GP:CAL21438.1;Name=CAL21438.1;Note=Similar to Escherichia coli hypothetical protein YbcJ SW:YBCJ_ECOLI (P45571) (70 aa) fasta scores: E(): 5.9e-18%2C 71.4%25 id in 70 aa%2C and to Neisseria meningitidis hypothetical protein NMA0633 TR:Q9JVX7 (EMBL:AL162753) (77 aa) fasta scores: E(): 1.1e-08%2C 46.9%25 id in 64 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL162753;product=conserved hypothetical protein;protein_id=CAL21438.1;transl_table=11
AL590842.1	EMBL	repeat_region	3153099	3153810	.	-	.	ID=id6735;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	3153207	3153665	.	-	.	ID=gene2791;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO2826
AL590842.1	EMBL	CDS	3153207	3153665	.	-	0	ID=cds2748;Parent=gene2791;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL21439.1;Name=CAL21439.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL21439.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3153300	3153611	.	-	.	ID=id6736;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	3153841	3154467	.	-	.	ID=gene2792;Name=upp;gbkey=Gene;gene=upp;gene_biotype=protein_coding;gene_synonym=uraP;locus_tag=YPO2827
AL590842.1	EMBL	CDS	3153841	3154467	.	-	0	ID=cds2749;Parent=gene2792;Dbxref=GOA:Q8ZCX9,InterPro:IPR005765,InterPro:IPR029057,NCBI_GP:CAL21440.1;Name=CAL21440.1;Note=Similar to Escherichia coli uracil phosphoribosyltransferase Upp SW:UPP_ECOLI (P25532) (208 aa) fasta scores: E(): 0%2C 93.3%25 id in 208 aa%2C and to Vibrio cholerae uracil phosphoribosyltransferase VC2225 TR:Q9KPY7 (EMBL:AE004294) (208 aa) fasta scores: E(): 0%2C 83.2%25 id in 208 aa;gbkey=CDS;gene=upp;inference=similar to sequence:INSDC:AE004294;product=uracil phosphoribosyltransferase;protein_id=CAL21440.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3153922	3154443	.	-	.	ID=id6737;Note=Pfam match to entry PF00156 Pribosyltran%2CPhosphoribosyl transferase domain%2C score 56.50%2C E-value 5.9e-13;gbkey=misc_feature;gene=upp;inference=protein motif:PF00156
AL590842.1	EMBL	gene	3154864	3155907	.	+	.	ID=gene2793;Name=purI;gbkey=Gene;gene=purI;gene_biotype=protein_coding;gene_synonym=purM;locus_tag=YPO2828
AL590842.1	EMBL	CDS	3154864	3155907	.	+	0	ID=cds2750;Parent=gene2793;Dbxref=GOA:Q8ZCX8,InterPro:IPR000728,InterPro:IPR004733,InterPro:IPR010918,InterPro:IPR016188,NCBI_GP:CAL21441.1;Name=CAL21441.1;Note=Similar to Salmonella typhimurium probable 5'-phosphoribosyl-5-aminoimidazole synthetase PurI TR:P74883 (EMBL:U68765) (345 aa) fasta scores: E(): 0%2C83.5%25 id in 345 aa%2C and to Escherichia coli probable phosphoribosylaminoimidazole synthetase PurM TR:AAG14577 (EMBL:AF293164) (350 aa) fasta scores: E(): 0%2C 82.6%25 id in 345 aa;gbkey=CDS;gene=purI;inference=similar to sequence:INSDC:U68765;product=putative phosphoribosylaminoimidazole synthetase;protein_id=CAL21441.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3154927	3155868	.	+	.	ID=id6738;Note=Pfam match to entry PF00586 AIRS%2C AIR synthase related protein%2C score 481.90%2C E-value 5.2e-141;gbkey=misc_feature;gene=purI;inference=protein motif:PF00586
AL590842.1	EMBL	gene	3156022	3156660	.	+	.	ID=gene2794;Name=purN;gbkey=Gene;gene=purN;gene_biotype=protein_coding;locus_tag=YPO2829
AL590842.1	EMBL	CDS	3156022	3156660	.	+	0	ID=cds2751;Parent=gene2794;Dbxref=GOA:Q7CJJ9,InterPro:IPR001555,InterPro:IPR002376,InterPro:IPR004607,UniProtKB/TrEMBL:Q7CJJ9,NCBI_GP:CAL21442.1;Name=CAL21442.1;Note=Similar to Escherichia coli phosphoribosylglycinamide formyltransferase PurN SW:PUR3_ECOLI (P08179) (212 aa) fasta scores: E(): 0%2C 72.2%25 id in 209 aa;gbkey=CDS;gene=purN;product=putative phosphoribosylglycinamide formyltransferase;protein_id=CAL21442.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3156025	3156567	.	+	.	ID=id6739;Note=Pfam match to entry PF00551 formyl_transf%2C Formyl transferase%2C score 299.40%2C E-value 4.4e-86;gbkey=misc_feature;gene=purN;inference=protein motif:PF00551
AL590842.1	EMBL	sequence_feature	3156421	3156492	.	+	.	ID=id6740;Note=PS00373 Phosphoribosylglycinamide formyltransferase active site.;gbkey=misc_feature;gene=purN;inference=protein motif:ProSite:PS00373
AL590842.1	EMBL	gene	3156889	3157434	.	+	.	ID=gene2795;Name=speG;gbkey=Gene;gene=speG;gene_biotype=protein_coding;locus_tag=YPO2830
AL590842.1	EMBL	CDS	3156889	3157434	.	+	0	ID=cds2752;Parent=gene2795;Dbxref=GOA:Q7CJK0,InterPro:IPR000182,InterPro:IPR016181,UniProtKB/TrEMBL:Q7CJK0,NCBI_GP:CAL21443.1;Name=CAL21443.1;Note=Similar to Escherichia coli spermidine N1-acetyltransferase SpeG SW:ATDA_ECOLI (P37354) (185 aa) fasta scores: E(): 0%2C 80.5%25 id in 174 aa%2C and to Vibrio cholerae spermidine N1-acetyltransferase VCA0947 TR:Q9KL03 (EMBL:AE004421) (173 aa) fasta scores: E(): 0%2C 59.2%25 id in 169 aa;gbkey=CDS;gene=speG;inference=similar to sequence:INSDC:AE004421;product=spermidine acetyltransferase;protein_id=CAL21443.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3157078	3157311	.	+	.	ID=id6741;Note=Pfam match to entry PF00583 Acetyltransf%2CAcetyltransferase (GNAT) family%2C score 63.00%2C E-value 6.5e-15;gbkey=misc_feature;gene=speG;inference=protein motif:PF00583
AL590842.1	EMBL	pseudogene	3157531	3158717	.	-	.	ID=gene2796;Name=fliB;gbkey=Gene;gene=fliB;gene_biotype=pseudogene;gene_synonym=nml;locus_tag=YPO2831;pseudo=true
AL590842.1	EMBL	CDS	3157531	3158717	.	-	0	ID=cds2753;Parent=gene2796;Note=Similar to Salmonella typhimurium flagellar associated lysine-N-methylase FliB SW:FLIB_SALTY (Q56106) (401 aa) fasta scores: E(): 0%2C 30.0%25 id in 400 aa%2C and to Salmonella cholerae-suis flagellar protein FliU TR:Q9KJV4 (EMBL:AF159460) (401 aa) fasta scores: E(): 0%2C 30.3%25 id in 400 aa. Contains a frameshift after codon 116. Frame shift occurs at a poly A hexamer. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=fliB;inference=similar to sequence:INSDC:AF159460;product=putative flagellar associated lysine-N-methylase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	3158945	3159757	.	-	.	ID=gene2797;Name=pstb;gbkey=Gene;gene=pstb;gene_biotype=protein_coding;locus_tag=YPO2833
AL590842.1	EMBL	CDS	3158945	3159757	.	-	0	ID=cds2754;Parent=gene2797;Dbxref=GOA:Q8ZCX5,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR005670,InterPro:IPR015850,InterPro:IPR017871,InterPro:IPR027417,NCBI_GP:CAL21445.1;Name=CAL21445.1;Note=Similar to Pseudomonas aeruginosa phosphate transport ATP-binding protein PstB TR:Q51546 (EMBL:D45195) (277 aa) fasta scores: E(): 0%2C 71.7%25 id in 254 aa%2C and to Vibrio cholerae phosphate ABC transporter%2C ATP-binding protein VC0726 TR:Q9KU04 (EMBL:AE004159) (273 aa) fasta scores: E(): 0%2C 72.1%25 id in 262 aa. Similar to YPO4114 (58.8%25 identity in 250 aa overlap);gbkey=CDS;gene=pstb;inference=similar to sequence:INSDC:D45195;product=putative phosphate transport ATP-binding protein;protein_id=CAL21445.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3159035	3159613	.	-	.	ID=id6742;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 194.60%2C E-value 1.5e-54;gbkey=misc_feature;gene=pstb;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	3159215	3159259	.	-	.	ID=id6743;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=pstb;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	3159569	3159592	.	-	.	ID=id6744;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=pstb;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3159662	3159691	.	-	.	ID=id6745;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.;gbkey=misc_feature;gene=pstb;inference=protein motif:ProSite:PS00339
AL590842.1	EMBL	gene	3159785	3161497	.	-	.	ID=gene2798;Name=pstA;gbkey=Gene;gene=pstA;gene_biotype=protein_coding;locus_tag=YPO2834
AL590842.1	EMBL	CDS	3159785	3161497	.	-	0	ID=cds2755;Parent=gene2798;Dbxref=GOA:Q0WD66,InterPro:IPR000515,InterPro:IPR005672,UniProtKB/TrEMBL:Q0WD66,NCBI_GP:CAL21446.1;Name=CAL21446.1;Note=Similar to Pseudomonas aeruginosa phosphate transport system permease protein PstA pstA TR:Q51545 (EMBL:D45195) (513 aa) fasta scores: E(): 0%2C 50.7%25 id in 503 aa%2C and to Vibrio cholerae phosphate ABC transporter%2Cpermease protein VC0725 TR:Q9KU05 (EMBL:AE004159) (548 aa) fasta scores: E(): 0%2C 52.9%25 id in 554 aa. Possible alternative translational start sites;gbkey=CDS;gene=pstA;inference=similar to sequence:INSDC:D45195;product=putative phosphate transport system permease;protein_id=CAL21446.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3159827	3159892	.	-	.	ID=id6746;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=pstA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3159989	3160204	.	-	.	ID=id6747;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 57.60%2C E-value 2.7e-13;gbkey=misc_feature;gene=pstA;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	3160070	3160135	.	-	.	ID=id6748;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=pstA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3160115	3160201	.	-	.	ID=id6749;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;gene=pstA;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	3160220	3160285	.	-	.	ID=id6750;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=pstA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3160331	3160396	.	-	.	ID=id6751;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=pstA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3160457	3160522	.	-	.	ID=id6752;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=pstA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3161339	3161404	.	-	.	ID=id6753;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=pstA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3161497	3163746	.	-	.	ID=gene2799;Name=pstC;gbkey=Gene;gene=pstC;gene_biotype=protein_coding;locus_tag=YPO2835
AL590842.1	EMBL	CDS	3161497	3163746	.	-	0	ID=cds2756;Parent=gene2799;Dbxref=GOA:Q7CJK1,InterPro:IPR000515,UniProtKB/TrEMBL:Q7CJK1,NCBI_GP:CAL21447.1;Name=CAL21447.1;Note=Similar to Pseudomonas aeruginosa phosphate transport system permease protein PstC pstc or pa5368 TR:Q51544 (EMBL:D45195) (677 aa) fasta scores: E(): 0%2C42.8%25 id in 694 aa%2C and to Vibrio cholerae phosphate ABC transporter%2C permease protein VC0724 TR:Q9KU06 (EMBL:AE004159) (731 aa) fasta scores: E(): 0%2C 40.9%25 id in 743 aa. Possible alternative translational start sites;gbkey=CDS;gene=pstC;inference=similar to sequence:INSDC:D45195;product=putative phosphate transport system permease;protein_id=CAL21447.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3161542	3161607	.	-	.	ID=id6754;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=pstC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3161674	3161892	.	-	.	ID=id6755;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 59.10%2C E-value 9.7e-14;gbkey=misc_feature;gene=pstC;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	3161755	3161820	.	-	.	ID=id6756;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=pstC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3161803	3161889	.	-	.	ID=id6757;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;gene=pstC;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	3161884	3161949	.	-	.	ID=id6758;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=pstC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3162010	3162075	.	-	.	ID=id6759;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=pstC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3162136	3162201	.	-	.	ID=id6760;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=pstC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3162214	3162279	.	-	.	ID=id6761;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=pstC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3162319	3162384	.	-	.	ID=id6762;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=pstC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3163570	3163635	.	-	.	ID=id6763;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=pstC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3163999	3166062	.	+	.	ID=gene2800;Name=ppk;gbkey=Gene;gene=ppk;gene_biotype=protein_coding;locus_tag=YPO2836
AL590842.1	EMBL	CDS	3163999	3166062	.	+	0	ID=cds2757;Parent=gene2800;Dbxref=GOA:Q8ZCX2,InterPro:IPR001736,InterPro:IPR003414,InterPro:IPR024953,InterPro:IPR025198,InterPro:IPR025200,NCBI_GP:CAL21448.1;Name=CAL21448.1;Note=Similar to Escherichia coli polyphosphate kinase Ppk SW:PPK_ECOLI (P28688) (687 aa) fasta scores: E(): 0%2C 86.9%25 id in 687 aa%2C and to Klebsiella aerogenes polyphosphate kinase Ppk SW:PPK_KLEAE (Q07411) (684 aa) fasta scores: E(): 0%2C 84.4%25 id in 685 aa;gbkey=CDS;gene=ppk;product=polyphosphate kinase;protein_id=CAL21448.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3164002	3166041	.	+	.	ID=id6764;Note=Pfam match to entry PF02503 PP_kinase%2C %2C score 1439.50%2C E-value 0;gbkey=misc_feature;gene=ppk;inference=protein motif:PF02503
AL590842.1	EMBL	gene	3166073	3167632	.	+	.	ID=gene2801;Name=ppx;gbkey=Gene;gene=ppx;gene_biotype=protein_coding;locus_tag=YPO2837
AL590842.1	EMBL	CDS	3166073	3167632	.	+	0	ID=cds2758;Parent=gene2801;Dbxref=GOA:Q7CJK2,InterPro:IPR003695,InterPro:IPR022371,PDB:3RF0,UniProtKB/TrEMBL:Q7CJK2,NCBI_GP:CAL21449.1;Name=CAL21449.1;Note=Similar to Escherichia coli exopolyphosphatase Ppx SW:PPX_ECOLI (P29014) (512 aa) fasta scores: E(): 0%2C 77.2%25 id in 509 aa%2C and to Salmonella typhimurium exopolyphosphatase Ppx TR:O86091 (EMBL:AF085682) (513 aa) fasta scores: E(): 0%2C 77.4%25 id in 513 aa. Similar to the N-terminus of YPO3870 (58.0%25 identity in 81 aa overlap);gbkey=CDS;gene=ppx;inference=similar to sequence:INSDC:AF085682;product=putative exopolyphosphatase;protein_id=CAL21449.1;transl_table=11
AL590842.1	EMBL	gene	3167744	3167956	.	+	.	ID=gene2802;Name=yfgG;gbkey=Gene;gene=yfgG;gene_biotype=protein_coding;locus_tag=YPO2838
AL590842.1	EMBL	CDS	3167744	3167956	.	+	0	ID=cds2759;Parent=gene2802;Dbxref=InterPro:IPR022576,UniProtKB/TrEMBL:Q7CJK3,NCBI_GP:CAL21450.1;Name=CAL21450.1;Note=Similar to Escherichia coli hypothetical protein YfgG SW:YFGG_ECOLI (P76571) (63 aa) fasta scores: E(): 3e-05%2C 42.9%25 id in 49 aa;gbkey=CDS;gene=yfgG;product=putative exported protein;protein_id=CAL21450.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3167801	3167869	.	+	.	ID=id6765;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=yfgG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3168008	3169483	.	+	.	ID=gene2803;Name=mgtE;gbkey=Gene;gene=mgtE;gene_biotype=protein_coding;locus_tag=YPO2839
AL590842.1	EMBL	CDS	3168008	3169483	.	+	0	ID=cds2760;Parent=gene2803;Dbxref=GOA:Q7CJK4,InterPro:IPR000644,InterPro:IPR006667,InterPro:IPR006668,InterPro:IPR006669,UniProtKB/TrEMBL:Q7CJK4,NCBI_GP:CAL21451.1;Name=CAL21451.1;Note=N-terminus of the CDS is similar to Bacillus firmus magnesium transport protein MgtE TR:Q45121 (EMBL:U18744) (312 aa) fasta scores: E(): 7.7e-27%2C 29.9%25 id in 311 aa. Full length CDS is similar to Pseudomonas aeruginosa probable magnesium transporter MgtE TR:AAG04302 (EMBL:AE004525) (482 aa) fasta scores: E(): 0%2C 54.6%25 id in 480 aa;gbkey=CDS;gene=mgtE;inference=similar to sequence:INSDC:U18744;product=putative divalent cation transport protein;protein_id=CAL21451.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3169088	3169465	.	+	.	ID=id6766;Note=Pfam match to entry PF01769 MgtE%2C Divalent cation transporter%2C score 59.80%2C E-value 6e-14;gbkey=misc_feature;gene=mgtE;inference=protein motif:PF01769
AL590842.1	EMBL	sequence_feature	3169211	3169279	.	+	.	ID=id6767;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=mgtE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3169298	3169366	.	+	.	ID=id6768;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=mgtE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3169409	3169477	.	+	.	ID=id6769;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=mgtE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3169623	3170975	.	+	.	ID=gene2804;Name=YPO2840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2840
AL590842.1	EMBL	CDS	3169623	3170975	.	+	0	ID=cds2761;Parent=gene2804;Dbxref=InterPro:IPR013126,InterPro:IPR018181,UniProtKB/TrEMBL:Q7CJK5,NCBI_GP:CAL21452.1;Name=CAL21452.1;Note=Similarity to an internal region of Methanosarcina thermophila heat shock protein 70 Hsp70 TR:Q9UXR0 (EMBL:Y17862) (610 aa) fasta scores: E(): 1.6e-06%2C 25.3%25 id in 359 aa. Full length CDS is similar to Escherichia coli hypothetical protein YegD SW:YEGD_ECOLI (P36928) (450 aa) fasta scores: E(): 0%2C 71.8%25 id in 450 aa;gbkey=CDS;inference=similar to sequence:INSDC:Y17862;product=putative heat shock protein;protein_id=CAL21452.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3170259	3170300	.	+	.	ID=id6770;Note=PS00329 Heat shock hsp70 proteins family signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00329
AL590842.1	EMBL	gene	3171247	3172095	.	-	.	ID=gene2805;Name=YPO2841;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2841
AL590842.1	EMBL	CDS	3171247	3172095	.	-	0	ID=cds2762;Parent=gene2805;Dbxref=GOA:Q0WD59,InterPro:IPR000515,UniProtKB/TrEMBL:Q0WD59,NCBI_GP:CAL21453.1;Name=CAL21453.1;Note=Similar to Agrobacterium tumefaciens mannopine permease MotD TR:Q44381 (EMBL:AF242881) (273 aa) fasta scores: E(): 0%2C 41.5%25 id in 258 aa%2C and to Pseudomonas aeruginosa probable ABC transporter permease PA0606 TR:AAG03995 (EMBL:AE004497) (276 aa) fasta scores: E(): 0%2C65.4%25 id in 260 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF242881;product=putative ABC transporter permease;protein_id=CAL21453.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3171292	3171357	.	-	.	ID=id6771;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3171376	3171597	.	-	.	ID=id6772;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 59.50%2C E-value 7.3e-14;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	3171454	3171519	.	-	.	ID=id6773;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3171508	3171594	.	-	.	ID=id6774;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	3171583	3171648	.	-	.	ID=id6775;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3171694	3171759	.	-	.	ID=id6776;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3171787	3171852	.	-	.	ID=id6777;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3171967	3172032	.	-	.	ID=id6778;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3172157	3173422	.	-	.	ID=gene2806;Name=YPO2842;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2842
AL590842.1	EMBL	CDS	3172157	3173422	.	-	0	ID=cds2763;Parent=gene2806;Dbxref=GOA:Q0WD58,InterPro:IPR000515,UniProtKB/TrEMBL:Q0WD58,NCBI_GP:CAL21454.1;Name=CAL21454.1;Note=Similarity to the N-terminus of Agrobacterium tumefaciens mannopine permease MotC TR:Q44382 (EMBL:AF242881) (294 aa) fasta scores: E(): 2.7e-29%2C 41.3%25 id in 213 aa%2C and to the full length Pseudomonas aeruginosa probable ABC transporter permease PA0605 TR:AAG03994 (EMBL:AE004497) (415 aa) fasta scores: E(): 0%2C 54.7%25 id in 397 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF242881;product=putative ABC transporter permease;protein_id=CAL21454.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3172196	3172261	.	-	.	ID=id6779;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3172277	3172498	.	-	.	ID=id6780;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 40.70%2C E-value 3.2e-08;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	3172328	3172393	.	-	.	ID=id6781;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3172409	3172495	.	-	.	ID=id6782;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	3172493	3172558	.	-	.	ID=id6783;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3172652	3172717	.	-	.	ID=id6784;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3172739	3172804	.	-	.	ID=id6785;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3173246	3173311	.	-	.	ID=id6786;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3173469	3174497	.	-	.	ID=gene2807;Name=YPO2843;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2843
AL590842.1	EMBL	CDS	3173469	3174497	.	-	0	ID=cds2764;Parent=gene2807;Dbxref=UniProtKB/TrEMBL:Q7CJK6,NCBI_GP:CAL21455.1;Name=CAL21455.1;Note=Similar to Agrobacterium radiobacter agropine permease protein AgtB TR:Q9R701 (EMBL:AF242881) (364 aa) fasta scores: E(): 9.9e-26%2C 30.3%25 id in 320 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0222 TR:AAG03611 (EMBL:AE004460) (352 aa) fasta scores: E(): 0%2C56.1%25 id in 342 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF242881;product=putative transport system periplasmic protein;protein_id=CAL21455.1;transl_table=11
AL590842.1	EMBL	gene	3174550	3175839	.	-	.	ID=gene2808;Name=gabT;gbkey=Gene;gene=gabT;gene_biotype=protein_coding;gene_synonym=goaG;locus_tag=YPO2844
AL590842.1	EMBL	CDS	3174550	3175839	.	-	0	ID=cds2765;Parent=gene2808;Dbxref=GOA:Q0WD56,InterPro:IPR004632,InterPro:IPR005814,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q0WD56,NCBI_GP:CAL21456.1;Name=CAL21456.1;Note=Similar to Escherichia coli 4-aminobutyrate aminotransferase GoaG SW:GOAG_ECOLI (P50457) (421 aa) fasta scores: E(): 0%2C 65.7%25 id in 428 aa%2C and to Pseudomonas aeruginosa 4-aminobutyrate aminotransferase GabT TR:AAG03655 (EMBL:AE004465) (426 aa) fasta scores: E(): 0%2C53.0%25 id in 423 aa;gbkey=CDS;gene=gabT;inference=similar to sequence:INSDC:AE004465;product=putative aminobutyrate aminotransferase;protein_id=CAL21456.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3174613	3175749	.	-	.	ID=id6787;Note=Pfam match to entry PF00202 aminotran_3%2CAminotransferases class-III pyridoxal-phosphate%2C score 459.70%2C E-value 2.4e-159;gbkey=misc_feature;gene=gabT;inference=protein motif:PF00202
AL590842.1	EMBL	sequence_feature	3175000	3175116	.	-	.	ID=id6788;Note=PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.;gbkey=misc_feature;gene=gabT;inference=protein motif:ProSite:PS00600
AL590842.1	EMBL	sequence_feature	3175711	3175770	.	-	.	ID=id6789;Note=PS00636 Nt-dnaJ domain signature.;gbkey=misc_feature;gene=gabT;inference=protein motif:ProSite:PS00636
AL590842.1	EMBL	gene	3176021	3177526	.	+	.	ID=gene2809;Name=YPO2845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2845
AL590842.1	EMBL	CDS	3176021	3177526	.	+	0	ID=cds2766;Parent=gene2809;Dbxref=GOA:Q7CJK7,InterPro:IPR000524,InterPro:IPR004839,InterPro:IPR011991,InterPro:IPR015421,InterPro:IPR015424,UniProtKB/TrEMBL:Q7CJK7,NCBI_GP:CAL21457.1;Name=CAL21457.1;Note=Similar to Rhizobium meliloti probable rhizopine catabolism regulatory protein MocR SW:MOCR_RHIME (P49309) (493 aa) fasta scores: E(): 0%2C 39.1%25 id in 460 aa%2C and to Rhizobium leguminosarum putative regulatory protein MocR TR:O85775 (EMBL:AF076240) (488 aa) fasta scores: E(): 0%2C41.0%25 id in 466 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF076240;product=putative GntR-family regulatory protein;protein_id=CAL21457.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3176105	3176284	.	+	.	ID=id6790;Note=Pfam match to entry PF00392 gntR%2C Bacterial regulatory proteins%2C gntR family%2C score 68.90%2C E-value 9.4e-20;gbkey=misc_feature;inference=protein motif:PF00392
AL590842.1	EMBL	gene	3177909	3178994	.	+	.	ID=gene2810;Name=YPO2846;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2846
AL590842.1	EMBL	CDS	3177909	3178994	.	+	0	ID=cds2767;Parent=gene2810;Dbxref=GOA:Q0WD54,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR005893,InterPro:IPR008995,InterPro:IPR013611,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WD54,NCBI_GP:CAL21458.1;Name=CAL21458.1;Note=Similar to Agrobacterium radiobacter agropine permease AgtA TR:Q9R702 (EMBL:AF242881) (359 aa) fasta scores: E(): 0%2C 42.5%25 id in 351 aa%2C and to Streptomyces coelicolor putative polyamine ABC-transporter ATP-binding protein SC8B7.10C TR:O86831 (EMBL:AL031225) (397 aa) fasta scores: E(): 0%2C 41.2%25 id in 362 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL031225;product=putitive ABC-transporter ATP-binding protein;protein_id=CAL21458.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3177999	3178544	.	+	.	ID=id6791;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 223.20%2C E-value 3.9e-63;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	3178020	3178043	.	+	.	ID=id6792;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3178314	3178358	.	+	.	ID=id6793;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	3179358	3180692	.	+	.	ID=gene2811;Name=yegM;gbkey=Gene;gene=yegM;gene_biotype=protein_coding;locus_tag=YPO2847
AL590842.1	EMBL	CDS	3179358	3180692	.	+	0	ID=cds2768;Parent=gene2811;Dbxref=GOA:Q8ZCW1,InterPro:IPR006143,InterPro:IPR022824,NCBI_GP:CAL21459.1;Name=CAL21459.1;Note=Similar to Escherichia coli acriflavin resistance protein E AcrE SW:ACRE_ECOLI (P24180) (385 aa) fasta scores: E(): 1.2e-26%2C 31.3%25 id in 361 aa%2C and to Escherichia coli hypothetical protein YegM SW:YEGM_ECOLI (P76397) (415 aa) fasta scores: E(): 0%2C 64.5%25 id in 409 aa;gbkey=CDS;gene=yegM;product=putitive HlyD family secretion protein;protein_id=CAL21459.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3179388	3179456	.	+	.	ID=id6794;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=yegM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3179619	3180503	.	+	.	ID=id6795;Note=Pfam match to entry PF00529 HlyD%2C HlyD family secretion protein%2C score 80.50%2C E-value 3.5e-20;gbkey=misc_feature;gene=yegM;inference=protein motif:PF00529
AL590842.1	EMBL	gene	3180692	3183850	.	+	.	ID=gene2812;Name=yegN;gbkey=Gene;gene=yegN;gene_biotype=protein_coding;locus_tag=YPO2848
AL590842.1	EMBL	CDS	3180692	3183850	.	+	0	ID=cds2769;Parent=gene2812;Dbxref=GOA:Q8ZCW0,InterPro:IPR001036,InterPro:IPR022831,InterPro:IPR027463,NCBI_GP:CAL21460.1;Name=CAL21460.1;Note=Similar to Pseudomonas aeruginosa multidrug efflux transporter AmrB TR:AAG05406 (EMBL:AF147719) (1045 aa) fasta scores: E(): 0%2C 29.8%25 id in 1053 aa%2C and to Escherichia coli hypothetical protein YegN SW:YEGN_ECOLI (P76398) (1040 aa) fasta scores: E(): 0%2C 81.4%25 id in 1039 aa. Similar to YPO2849 (50.5%25 identity in 1018 aa overlap);gbkey=CDS;gene=yegN;inference=similar to sequence:INSDC:AF147719;product=AcrB/AcrD/AcrF family membrane protein;protein_id=CAL21460.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3180725	3183760	.	+	.	ID=id6796;Note=Pfam match to entry PF00873 ACR_tran%2C AcrB/AcrD/AcrF family%2C score 1430.20%2C E-value 0;gbkey=misc_feature;gene=yegN;inference=protein motif:PF00873
AL590842.1	EMBL	sequence_feature	3180734	3180802	.	+	.	ID=id6797;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3181724	3181777	.	+	.	ID=id6798;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3181790	3181858	.	+	.	ID=id6799;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3181877	3181945	.	+	.	ID=id6800;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3182003	3182071	.	+	.	ID=id6801;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3182105	3182173	.	+	.	ID=id6802;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3182294	3182362	.	+	.	ID=id6803;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3183233	3183271	.	+	.	ID=id6804;Note=PS01331 Thymidylate kinase signature.;gbkey=misc_feature;gene=yegN;inference=protein motif:ProSite:PS01331
AL590842.1	EMBL	sequence_feature	3183290	3183358	.	+	.	ID=id6805;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3183416	3183484	.	+	.	ID=id6806;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3183593	3183661	.	+	.	ID=id6807;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3183689	3183757	.	+	.	ID=id6808;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3183847	3186921	.	+	.	ID=gene2813;Name=yegO;gbkey=Gene;gene=yegO;gene_biotype=protein_coding;locus_tag=YPO2849
AL590842.1	EMBL	CDS	3183847	3186921	.	+	0	ID=cds2770;Parent=gene2813;Dbxref=GOA:Q8ZCV9,InterPro:IPR001036,InterPro:IPR023931,InterPro:IPR027463,NCBI_GP:CAL21461.1;Name=CAL21461.1;Note=Similar to Escherichia coli hypothetical protein YegO SW:YEGO_ECOLI (P76399) (1025 aa) fasta scores: E(): 0%2C80.1%25 id in 1019 aa%2C and to Pseudomonas aeruginosa probable RND efflux transporter PA2526 TR:AAG05914 (EMBL:AE004680) (1036 aa) fasta scores: E(): 0%2C 61.7%25 id in 1019 aa. Similar to YPO2848 (50.6%25 identity in 1018 aa overlap);gbkey=CDS;gene=yegO;inference=similar to sequence:INSDC:AE004680;product=AcrB/AcrD/AcrF family membrane protein;protein_id=CAL21461.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3183853	3186873	.	+	.	ID=id6809;Note=Pfam match to entry PF00873 ACR_tran%2C AcrB/AcrD/AcrF family%2C score 1450.60%2C E-value 0;gbkey=misc_feature;gene=yegO;inference=protein motif:PF00873
AL590842.1	EMBL	sequence_feature	3183880	3183948	.	+	.	ID=id6810;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegO;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3184852	3184905	.	+	.	ID=id6811;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegO;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3184924	3184983	.	+	.	ID=id6812;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegO;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3185011	3185079	.	+	.	ID=id6813;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegO;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3185137	3185205	.	+	.	ID=id6814;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegO;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3185248	3185316	.	+	.	ID=id6815;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegO;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3186403	3186471	.	+	.	ID=id6816;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegO;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3186529	3186597	.	+	.	ID=id6817;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegO;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3186688	3186756	.	+	.	ID=id6818;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegO;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3186799	3186867	.	+	.	ID=id6819;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegO;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3186955	3188352	.	+	.	ID=gene2814;Name=yegB;gbkey=Gene;gene=yegB;gene_biotype=protein_coding;locus_tag=YPO2850
AL590842.1	EMBL	CDS	3186955	3188352	.	+	0	ID=cds2771;Parent=gene2814;Dbxref=GOA:Q7CJL1,InterPro:IPR001411,InterPro:IPR004638,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,InterPro:IPR023721,NCBI_GP:CAL21462.1;Name=CAL21462.1;Note=Similar to the N-terminal region of Escherichia coli multidrug resistance protein B emrB SW:EMRB_ECOLI (P27304) (512 aa) fasta scores: E(): 9.9e-30%2C 31.1%25 id in 399 aa%2Cand to Escherichia coli hypothetical protein YegB SW:YEGB_ECOLI (P36554) (471 aa) fasta scores: E(): 0%2C 71.8%25 id in 465 aa;gbkey=CDS;gene=yegB;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL21462.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3186991	3187059	.	+	.	ID=id6820;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3187102	3187161	.	+	.	ID=id6821;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3187180	3187248	.	+	.	ID=id6822;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3187258	3187326	.	+	.	ID=id6823;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3187360	3187428	.	+	.	ID=id6824;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3187441	3187509	.	+	.	ID=id6825;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3187543	3187596	.	+	.	ID=id6826;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3187624	3187692	.	+	.	ID=id6827;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3187711	3187779	.	+	.	ID=id6828;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3187822	3187890	.	+	.	ID=id6829;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3187951	3188019	.	+	.	ID=id6830;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3188140	3188208	.	+	.	ID=id6831;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3188245	3188304	.	+	.	ID=id6832;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yegB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	pseudogene	3188383	3189764	.	+	.	ID=gene2815;Name=baeS;gbkey=Gene;gene=baeS;gene_biotype=pseudogene;locus_tag=YPO2851;pseudo=true
AL590842.1	EMBL	CDS	3188383	3189764	.	+	0	ID=cds2772;Parent=gene2815;Note=Similar to Escherichia coli two-component system%2Csensor protein BaeS SW:BAES_ECOLI (P30847) (467 aa) fasta scores: E(): 0%2C 65.6%25 id in 456 aa%2C and to Stenotrophomonas maltophilia putative two component signal transduction system SmeS TR:Q9RBZ0 (EMBL:AF173226) (467 aa) fasta scores: E(): 0%2C 39.8%25 id in 457 aa. Contains a frameshift after codon 370. The frameshift occurs within a homopolymeric tract of 7G. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=baeS;inference=similar to sequence:INSDC:AF173226;product=two-component system%2C sensor kinase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	3188410	3188469	.	+	.	ID=id6833;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=baeS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3188872	3189081	.	+	.	ID=id6834;Note=Pfam match to entry PF00672 DUF5%2C HAMP domain%2C score 80.40%2C E-value 3.8e-20;gbkey=misc_feature;gene=baeS;inference=protein motif:PF00672
AL590842.1	EMBL	sequence_feature	3188872	3188931	.	+	.	ID=id6835;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=baeS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3189121	3189495	.	+	.	ID=id6836;Note=Pfam match to entry PF00512 signal%2C Histidine kinase%2C score -13.00%2C E-value 0.00023;gbkey=misc_feature;gene=baeS;inference=protein motif:PF00512
AL590842.1	EMBL	gene	3189777	3190496	.	+	.	ID=gene2816;Name=baeR;gbkey=Gene;gene=baeR;gene_biotype=protein_coding;locus_tag=YPO2853
AL590842.1	EMBL	CDS	3189777	3190496	.	+	0	ID=cds2773;Parent=gene2816;Dbxref=GOA:Q0WD49,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,UniProtKB/TrEMBL:Q0WD49,NCBI_GP:CAL21464.1;Name=CAL21464.1;Note=Similar to Escherichia coli two-component system%2Ctranscriptional regulatory protein BaeR SW:BAER_ECOLI (P30846) (240 aa) fasta scores: E(): 0%2C 73.9%25 id in 241 aa%2Cand to Stenotrophomonas maltophilia putative two component signal transduction system protein SmeR TR:Q9RBZ1 (EMBL:AF173226) (229 aa) fasta scores: E(): 0%2C 53.0%25 id in 234 aa;gbkey=CDS;gene=baeR;inference=similar to sequence:INSDC:AF173226;product=two-component system response regulator;protein_id=CAL21464.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3189810	3190142	.	+	.	ID=id6837;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 109.50%2C E-value 6.3e-29;gbkey=misc_feature;gene=baeR;inference=protein motif:PF00072
AL590842.1	EMBL	sequence_feature	3190242	3190460	.	+	.	ID=id6838;Note=Pfam match to entry PF00486 trans_reg_C%2CTranscriptional regulatory protein%2C C terminal%2C score 98.90%2C E-value 2.9e-28;gbkey=misc_feature;gene=baeR;inference=protein motif:PF00486
AL590842.1	EMBL	sequence_feature	3190482	3190493	.	+	.	ID=id6839;Note=PS00294 Prenyl group binding site (CAAX box).;gbkey=misc_feature;gene=baeR;inference=protein motif:ProSite:PS00294
AL590842.1	EMBL	gene	3190633	3190971	.	+	.	ID=gene2817;Name=YPO2854;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2854
AL590842.1	EMBL	CDS	3190633	3190971	.	+	0	ID=cds2774;Parent=gene2817;Dbxref=InterPro:IPR010879,NCBI_GP:CAL21465.1;Name=CAL21465.1;Note=Similar to Escherichia coli hypothetical protein YegP SW:YEGP_ECOLI (P76402) (110 aa) fasta scores: E(): 3.4e-19%2C 53.7%25 id in 108 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0329 TR:AAG03718 (EMBL:AE004471) (110 aa) fasta scores: E(): 6.7e-15%2C 49.5%25 id in 95 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004471;product=conserved hypothetical protein;protein_id=CAL21465.1;transl_table=11
AL590842.1	EMBL	gene	3191246	3192640	.	+	.	ID=gene2818;Name=YPO2855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2855
AL590842.1	EMBL	CDS	3191246	3192640	.	+	0	ID=cds2775;Parent=gene2818;Dbxref=GOA:Q7CJL2,InterPro:IPR001539,UniProtKB/TrEMBL:Q7CJL2,NCBI_GP:CAL21466.1;Name=CAL21466.1;Note=Similar to Proteus mirabilis putative protease TR:Q9ZA85 (EMBL:AF088981) (334 aa) fasta scores: E(): 5.3e-19%2C 28.5%25 id in 316 aa%2C and to Escherichia coli putative protease YegQ SW:YEGQ_ECOLI (P76403) (453 aa) fasta scores: E(): 0%2C 83.4%25 id in 452 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF088981;product=putative protease;protein_id=CAL21466.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3191498	3192310	.	+	.	ID=id6840;Note=Pfam match to entry PF01136 Peptidase_U32%2C Peptidase family U32%2C score 583.30%2C E-value 1.5e-171;gbkey=misc_feature;inference=protein motif:PF01136
AL590842.1	EMBL	sequence_feature	3191759	3191815	.	+	.	ID=id6841;Note=PS01276 Peptidase family U32 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01276
AL590842.1	EMBL	gene	3193276	3194166	.	+	.	ID=gene2819;Name=YPO2856;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2856
AL590842.1	EMBL	CDS	3193276	3194166	.	+	0	ID=cds2776;Parent=gene2819;Dbxref=GOA:Q7CJL3,InterPro:IPR001206,InterPro:IPR005218,InterPro:IPR016064,InterPro:IPR022433,NCBI_GP:CAL21467.1;Name=CAL21467.1;Note=Similar to Escherichia coli hypothetical protein YegS SW:YEGS_ECOLI (P76407) (299 aa) fasta scores: E(): 0%2C68.0%25 id in 294 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA3023 TR:AAG06411 (EMBL:AE004727) (302 aa) fasta scores: E(): 0%2C 46.8%25 id in 293 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004727;product=putative diacylglycerol kinase;protein_id=CAL21467.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3193282	3193662	.	+	.	ID=id6842;Note=Pfam match to entry PF00781 DAGKc%2C Diacylglycerol kinase catalytic domain (presumed)%2C score 78.60%2C E-value 1.3e-19;gbkey=misc_feature;inference=protein motif:PF00781
AL590842.1	EMBL	gene	3194433	3194897	.	-	.	ID=gene2820;Name=YPO2857;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2857
AL590842.1	EMBL	CDS	3194433	3194897	.	-	0	ID=cds2777;Parent=gene2820;Dbxref=GOA:P58483,InterPro:IPR014453,NCBI_GP:CAL21468.1;Name=CAL21468.1;Note=Poor database matches. Similar to Escherichia coli hypothetical protein YkfE TR:BAA77890 (EMBL:D83536) (157 aa) fasta scores: E(): 9.2e-08%2C 31.6%25 id in 152 aa;gbkey=CDS;inference=similar to sequence:INSDC:D83536;product=putative exported protein;protein_id=CAL21468.1;transl_table=11
AL590842.1	EMBL	gene	3195291	3196061	.	+	.	ID=gene2821;Name=YPO2858;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2858
AL590842.1	EMBL	CDS	3195291	3196061	.	+	0	ID=cds2778;Parent=gene2821;Dbxref=UniProtKB/TrEMBL:Q0WD44,NCBI_GP:CAL21469.1;Name=CAL21469.1;Note=no significant database hits to the full length CDS. Weakly similar to the N-terminal region of Arabidopsis thaliana beta-galactosidase protein BGAL14 TR:Q9SCU8 (EMBL:AJ270310) (887 aa) fasta scores: E(): 9.9%2C 22.6%25 id in 226 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ270310;product=hypothetical protein;protein_id=CAL21469.1;transl_table=11
AL590842.1	EMBL	gene	3196123	3196923	.	-	.	ID=gene2822;Name=thiD;gbkey=Gene;gene=thiD;gene_biotype=protein_coding;locus_tag=YPO2859
AL590842.1	EMBL	CDS	3196123	3196923	.	-	0	ID=cds2779;Parent=gene2822;Dbxref=GOA:Q7CJL4,InterPro:IPR004399,InterPro:IPR013749,InterPro:IPR029056,UniProtKB/TrEMBL:Q7CJL4,NCBI_GP:CAL21470.1;Name=CAL21470.1;Note=Similar to Escherichia coli phosphomethylpyrimidine kinase ThiD SW:THID_ECOLI (P76422) (266 aa) fasta scores: E(): 0%2C 77.1%25 id in 266 aa%2C and to Salmonella typhimurium phosphomethylpyrimidine kinase ThiD SW:THID_SALTY (P55882) (266 aa) fasta scores: E(): 0%2C 75.9%25 id in 266 aa;gbkey=CDS;gene=thiD;product=putative phosphomethylpyrimidine kinase;protein_id=CAL21470.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3196270	3196893	.	-	.	ID=id6843;Note=Pfam match to entry PF00294 pfkB%2C pfkB family carbohydrate kinase%2C score -22.60%2C E-value 0.04;gbkey=misc_feature;gene=thiD;inference=protein motif:PF00294
AL590842.1	EMBL	gene	3197433	3197912	.	+	.	ID=gene2823;Name=YPO2860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2860
AL590842.1	EMBL	CDS	3197433	3197912	.	+	0	ID=cds2780;Parent=gene2823;Dbxref=InterPro:IPR010351,UniProtKB/TrEMBL:Q7CJL5,NCBI_GP:CAL21471.1;Name=CAL21471.1;Note=No significant database matches. CDS DNA has a low GC content%2C 32.91%25. Similar to YPO3895 (56.6%25 identity in 159 aa overlap)%2C YPO3935 (55.7%25 identity in 158 aa overlap)%2C YPO3894 (53.8%25 identity in 160 aa overlap). C-terminal region of the CDS is similar to YPO3893 (55.7%25 identity in 122 aa overlap);gbkey=CDS;product=putative membrane protein;protein_id=CAL21471.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3197475	3197528	.	+	.	ID=id6844;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	repeat_region	3197462	3197890	.	+	.	ID=id6845;Note=Repeated sequence thought to encode a possible membrane protein with no database hits. This sequence is repeated at positions :4366790..4367265%2C 4367331..436780%2C4367872..4368406%2C complement(4419711..4420226) and complement(4484307..4484653).;gbkey=repeat_region
AL590842.1	EMBL	pseudogene	3197971	3198225	.	+	.	ID=gene2824;Name=YPO2861;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO2861;pseudo=true
AL590842.1	EMBL	CDS	3197971	3198225	.	+	0	ID=cds2781;Parent=gene2824;Note=No significant database matches. CDS translational stop codon lies within a downstream IS285 element. Therefore CDS is probably disrupted by the insertion (at the C-terminal end) of the IS285 element. It is not clear whether this insertion affects the function of the protein. Similar to N-terminal region of YPO4106 (56.5%25 identity in 85 aa overlap);gbkey=CDS;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	repeat_region	3198226	3199540	.	-	.	ID=id6846;Note=insertion sequence:IS285;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	3198226	3198254	.	+	.	ID=id6847;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	3198261	3199469	.	-	.	ID=gene2825;Name=y1062;gbkey=Gene;gene=y1062;gene_biotype=protein_coding;gene_synonym=ypmt1.80C;locus_tag=YPO2862
AL590842.1	EMBL	CDS	3198261	3199469	.	-	0	ID=cds2782;Parent=gene2825;Dbxref=GOA:O68779,InterPro:IPR001207,UniProtKB/TrEMBL:O68779,NCBI_GP:CAL21473.1;Name=CAL21473.1;Note=Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa.;gbkey=CDS;gene=y1062;inference=similar to sequence:INSDC:AF053947;product=transposase for the IS285 insertion element;protein_id=CAL21473.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3198333	3199469	.	-	.	ID=id6848;Note=Pfam match to entry PF00872 Transpo_mutator%2CTransposase%2C Mutator family%2C score 430.40%2C E-value 1.6e-125;gbkey=misc_feature;gene=y1062;inference=protein motif:PF00872
AL590842.1	EMBL	sequence_feature	3198702	3198776	.	-	.	ID=id6849;Note=PS01007 Transposases%2C Mutator family%2C signature.;gbkey=misc_feature;gene=y1062;inference=protein motif:ProSite:PS01007
AL590842.1	EMBL	INVERTED	3199512	3199540	.	-	.	ID=id6850;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	3199551	3200195	.	+	.	ID=gene2826;Name=YPO2863;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2863
AL590842.1	EMBL	CDS	3199551	3200195	.	+	0	ID=cds2783;Parent=gene2826;Dbxref=UniProtKB/TrEMBL:Q0WD40,NCBI_GP:CAL21474.1;Name=CAL21474.1;Note=C-terminal region of the protein is similar to Escherichia coli hypothetical protein YafU SW:YAFU_ECOLI (P77354) (112 aa) fasta scores: E(): 0.0029%2C 30.8%25 id in 104 aa. Internal region of the protein is similar to the N-terminus of Methanobacterium thermoautotrophicum putative membrane protein MTH1092 TR:O27164 (EMBL:AE000880) (257 aa) fasta scores: E(): 2.7%2C 25.0%25 id in 176 aa. N-terminal region of the CDS is similar to the C-terminus of YPO4106 (60.0%25 identity in 100 aa overlap). C-terminal region of the CDS is similar to YPO4105 (57.0%25 identity in 86 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AE000880;product=putative membrane protein;protein_id=CAL21474.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3199935	3199994	.	+	.	ID=id6851;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3200004	3200063	.	+	.	ID=id6852;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3200192	3200587	.	+	.	ID=gene2827;Name=YPO2864;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2864
AL590842.1	EMBL	CDS	3200192	3200587	.	+	0	ID=cds2784;Parent=gene2827;Dbxref=InterPro:IPR010665,UniProtKB/TrEMBL:Q7CJL7,NCBI_GP:CAL21475.1;Name=CAL21475.1;Note=No significant database matches. CDS DNA has a low GC content%2C 27.02%25. Similar to YPO2866 (65.6%25 identity in 131 aa overlap)%2C YPO2867 (62.9%25 identity in 132 aa overlap) and YPO2865 (61.8%25 identity in 131 aa overlap);gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL21475.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3200219	3200287	.	+	.	ID=id6853;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3200324	3200392	.	+	.	ID=id6854;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3200420	3200488	.	+	.	ID=id6855;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	repeat_region	3200480	3201395	.	+	.	ID=id6856;Note=This region appears to have arisen following a duplication event.;gbkey=repeat_region
AL590842.1	EMBL	gene	3200651	3201046	.	+	.	ID=gene2828;Name=YPO2865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2865
AL590842.1	EMBL	CDS	3200651	3201046	.	+	0	ID=cds2785;Parent=gene2828;Dbxref=InterPro:IPR010665,UniProtKB/TrEMBL:Q7CJL8,NCBI_GP:CAL21476.1;Name=CAL21476.1;Note=No significant database matches to the full length CDS. Similar to Borrelia burgdorferi conserved hypothetical integral membrane protein BB0717 TR:O51659 (EMBL:AE001171) (160 aa) fasta scores: E(): 3.1%2C 27.6%25 id in 116 aa. CDS DNA has a low GC content%2C 26.01%25. Similar to YPO2867 (67.4%25 identity in 132 aa overlap)%2C YPO2866 (68.7%25 identity in 131 aa overlap) and YPO2864 (61.8%25 identity in 131 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AE001171;product=putative membrane protein;protein_id=CAL21476.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3200678	3200746	.	+	.	ID=id6857;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3200783	3200851	.	+	.	ID=id6858;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3200879	3200947	.	+	.	ID=id6859;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3201084	3201503	.	+	.	ID=gene2829;Name=YPO2866;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2866
AL590842.1	EMBL	CDS	3201084	3201503	.	+	0	ID=cds2786;Parent=gene2829;Dbxref=InterPro:IPR010665,UniProtKB/TrEMBL:Q7CJL9,NCBI_GP:CAL21477.1;Name=CAL21477.1;Note=No significant database matches to the full length CDS. Similar to the C-terminal regions of Borrelia burgdorferi hypothetical protein BB0353 TR:O51328 (EMBL:AE001141) (599 aa) fasta scores: E(): 0.63%2C 28.8%25 id in 118 aa. CDS DNA has a low GC content%2C 30.95%25.. Similar to YPO2865 (68.7%25 identity in 131 aa overlap)%2C YPO2864 (65.6%25 identity in 131 aa overlap) and YPO2867 (59.8%25 identity in 132 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AE001141;product=putative membrane protein;protein_id=CAL21477.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3201120	3201188	.	+	.	ID=id6860;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3201231	3201299	.	+	.	ID=id6861;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3201336	3201404	.	+	.	ID=id6862;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3201567	3201965	.	+	.	ID=gene2830;Name=YPO2867;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2867
AL590842.1	EMBL	CDS	3201567	3201965	.	+	0	ID=cds2787;Parent=gene2830;Dbxref=InterPro:IPR010665,UniProtKB/TrEMBL:Q7CJM0,NCBI_GP:CAL21478.1;Name=CAL21478.1;Note=No significant database matches to the full length CDS. Similar to the C-terminal region of Saccharomyces cerevisiae dolichyl-diphosphooligosaccharide--protein glycosyltransferase protein OST6 SW:OSTY_YEAST (Q03723) (332 aa) fasta scores: E(): 2.8%2C 29.2%25 id in 120 aa. CDS DNA has a low GC content%2C 26.31%25. Similar to YPO2865 (67.4%25 identity in 132 aa overlap)%2C YPO2864 (62.9%25 identity in 132 aa overlap) and YPO2866 (59.8%25 identity in 132 aa overlap);gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL21478.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3201600	3201668	.	+	.	ID=id6863;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3201696	3201764	.	+	.	ID=id6864;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3201801	3201869	.	+	.	ID=id6865;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3201989	3202468	.	+	.	ID=gene2831;Name=YPO2868;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2868
AL590842.1	EMBL	CDS	3201989	3202468	.	+	0	ID=cds2788;Parent=gene2831;Dbxref=InterPro:IPR008514,UniProtKB/TrEMBL:Q7CJM1,NCBI_GP:CAL21479.1;Name=CAL21479.1;Note=Similar to the N-terminal region of Escherichia coli hypothetical protein YhhZ SW:YHHZ_ECOLI (P46855) (392 aa) fasta scores: E(): 3.3e-16%2C 40.9%25 id in 149 aa. Full length CDS is similar to Pseudomonas aeruginosa secreted protein HcpB TR:AAG03652 (EMBL:AE004939) (172 aa) fasta scores: E(): 5.8e-06%2C 38.9%25 id in 167 aa. CDS DNA has a low G+C content%2C 36.04%25. Similar to YPO2962 (59.1%25 identity in 159 aa overlap) and the N-terminal region of YPO2793 (59.1%25 identity in 159 aa overlap). N-terminal region of CDS is similar to YPO1872 (50.5%25 identity in 109 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AE004939;product=conserved hypothetical protein;protein_id=CAL21479.1;transl_table=11
AL590842.1	EMBL	repeat_region	3202520	3203231	.	-	.	ID=id6866;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	3202628	3203086	.	-	.	ID=gene2832;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO2869
AL590842.1	EMBL	CDS	3202628	3203086	.	-	0	ID=cds2789;Parent=gene2832;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL21480.1;Name=CAL21480.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL21480.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3202721	3203032	.	-	.	ID=id6867;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	3203461	3205038	.	-	.	ID=gene2833;Name=guaA;gbkey=Gene;gene=guaA;gene_biotype=protein_coding;locus_tag=YPO2870
AL590842.1	EMBL	CDS	3203461	3205038	.	-	0	ID=cds2790;Parent=gene2833;Dbxref=GOA:Q8ZCU4,InterPro:IPR001674,InterPro:IPR004739,InterPro:IPR014729,InterPro:IPR017926,InterPro:IPR022310,InterPro:IPR022955,InterPro:IPR025777,InterPro:IPR029062,NCBI_GP:CAL21481.1;Name=CAL21481.1;Note=Similar to Escherichia coli glutamine-hydrolyzing%2CGMP synthase GuaA SW:GUAA_ECOLI (P04079) (525 aa) fasta scores: E(): 0%2C 87.6%25 id in 525 aa%2C and to Vibrio cholerae GMP synthase VC0768 TR:Q9KTW2 (EMBL:AE004162) (517 aa) fasta scores: E(): 0%2C 81.5%25 id in 525 aa;gbkey=CDS;gene=guaA;inference=similar to sequence:INSDC:AE004162;product=putative GMP synthase;protein_id=CAL21481.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3203464	3203772	.	-	.	ID=id6868;Note=Pfam match to entry PF00958 GMP_synt_C%2C GMP synthase C terminal domain%2C score 227.70%2C E-value 1.7e-64;gbkey=misc_feature;gene=guaA;inference=protein motif:PF00958
AL590842.1	EMBL	sequence_feature	3204436	3205008	.	-	.	ID=id6869;Note=Pfam match to entry PF00117 GATase%2C Glutamine amidotransferase class-I%2C score 164.70%2C E-value 1.6e-45;gbkey=misc_feature;gene=guaA;inference=protein motif:PF00117
AL590842.1	EMBL	sequence_feature	3204763	3204798	.	-	.	ID=id6870;Note=PS00442 Glutamine amidotransferases class-I active site.;gbkey=misc_feature;gene=guaA;inference=protein motif:ProSite:PS00442
AL590842.1	EMBL	gene	3205218	3206681	.	-	.	ID=gene2834;Name=guaB;gbkey=Gene;gene=guaB;gene_biotype=protein_coding;gene_synonym=guaR;locus_tag=YPO2871
AL590842.1	EMBL	CDS	3205218	3206681	.	-	0	ID=cds2791;Parent=gene2834;Dbxref=GOA:Q0WD32,InterPro:IPR000644,InterPro:IPR001093,InterPro:IPR005990,InterPro:IPR013785,InterPro:IPR015875,NCBI_GP:CAL21482.1;Name=CAL21482.1;Note=Similar to Escherichia coli inosine-5'-monophosphate dehydrogenase GuaB SW:IMDH_ECOLI (P06981) (488 aa) fasta scores: E(): 0%2C 92.2%25 id in 486 aa%2C and to Haemophilus influenzae inosine-5'-monophosphate dehydrogenase GuaB SW:IMDH_HAEIN (P44334) (488 aa) fasta scores: E(): 0%2C 82.5%25 id in 485 aa;gbkey=CDS;gene=guaB;product=inosine-5'-monophosphate dehydrogenase;protein_id=CAL21482.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3205311	3205976	.	-	.	ID=id6871;Note=Pfam match to entry PF00478 IMPDH_C%2C IMP dehydrogenase / GMP reductase C terminus%2C score 393.10%2CE-value 2.7e-114;gbkey=misc_feature;gene=guaB;inference=protein motif:PF00478
AL590842.1	EMBL	sequence_feature	3205761	3205799	.	-	.	ID=id6872;Note=PS00487 IMP dehydrogenase / GMP reductase signature.;gbkey=misc_feature;gene=guaB;inference=protein motif:ProSite:PS00487
AL590842.1	EMBL	sequence_feature	3206064	3206225	.	-	.	ID=id6873;Note=Pfam match to entry PF00571 CBS%2C CBS domain%2C score 48.30%2C E-value 1.7e-10;gbkey=misc_feature;gene=guaB;inference=protein motif:PF00571
AL590842.1	EMBL	sequence_feature	3206250	3206411	.	-	.	ID=id6874;Note=Pfam match to entry PF00571 CBS%2C CBS domain%2C score 40.20%2C E-value 4.5e-08;gbkey=misc_feature;gene=guaB;inference=protein motif:PF00571
AL590842.1	EMBL	sequence_feature	3206415	3206678	.	-	.	ID=id6875;Note=Pfam match to entry PF01574 IMPDH_N%2C IMP dehydrogenase / GMP reductase N terminus%2C score 189.60%2CE-value 4.9e-53;gbkey=misc_feature;gene=guaB;inference=protein motif:PF01574
AL590842.1	EMBL	gene	3206851	3208230	.	+	.	ID=gene2835;Name=xseA;gbkey=Gene;gene=xseA;gene_biotype=protein_coding;locus_tag=YPO2872
AL590842.1	EMBL	CDS	3206851	3208230	.	+	0	ID=cds2792;Parent=gene2835;Dbxref=GOA:Q8ZCU2,InterPro:IPR003753,InterPro:IPR020579,InterPro:IPR025824,NCBI_GP:CAL21483.1;Name=CAL21483.1;Note=Similar to Escherichia coli exodeoxyribonuclease VII large subunit XseA SW:EX7L_ECOLI (P04994) (456 aa) fasta scores: E(): 0%2C 71.8%25 id in 454 aa%2C and to Vibrio cholerae exodeoxyribonuclease VII large subunit VC0766 TR:Q9KTW4 (EMBL:AE004162) (446 aa) fasta scores: E(): 0%2C 59.1%25 id in 443 aa;gbkey=CDS;gene=xseA;inference=similar to sequence:INSDC:AE004162;product=exodeoxyribonuclease VII large subunit;protein_id=CAL21483.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3206938	3207165	.	+	.	ID=id6876;Note=Pfam match to entry PF01336 tRNA_anti%2C tRNA synthetase anti-codon binding domain%2C score 40.70%2C E-value 3.4e-08;gbkey=misc_feature;gene=xseA;inference=protein motif:PF01336
AL590842.1	EMBL	gene	3208363	3208587	.	-	.	ID=gene2836;Name=YPO2873;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2873
AL590842.1	EMBL	CDS	3208363	3208587	.	-	0	ID=cds2793;Parent=gene2836;Dbxref=InterPro:IPR010807,InterPro:IPR029037,UniProtKB/TrEMBL:Q7CJM3,NCBI_GP:CAL21484.1;Name=CAL21484.1;Note=Similar to Vibrio cholerae hypothetical protein VC0765 TR:Q9KTW5 (EMBL:AE004162) (77 aa) fasta scores: E(): 5e-09%2C 36.5%25 id in 74 aa%2C and to C-terminal region of Escherichia coli hypothetical protein YfgJ SW:YFGJ_ECOLI (P76575) (83 aa) fasta scores: E(): 4.8e-16%2C 64.1%25 id in 64 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004162;product=conserved hypothetical protein;protein_id=CAL21484.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3208510	3208527	.	-	.	ID=id6877;Note=PS00190 Cytochrome c family heme-binding site signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00190
AL590842.1	EMBL	gene	3208636	3209592	.	-	.	ID=gene2837;Name=YPO2874;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2874
AL590842.1	EMBL	CDS	3208636	3209592	.	-	0	ID=cds2794;Parent=gene2837;Dbxref=GOA:Q7CJM4,InterPro:IPR004776,UniProtKB/TrEMBL:Q7CJM4,NCBI_GP:CAL21485.1;Name=CAL21485.1;Note=Similar to Vibrio cholerae hypothetical protein VCA0024 TR:Q9KNE1 (EMBL:AE004346) (330 aa) fasta scores: E(): 0%2C 44.4%25 id in 313 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA5466 TR:AAG08851 (EMBL:AE004959) (314 aa) fasta scores: E(): 3.7e-16%2C 32.3%25 id in 303 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004959;product=putative membrane protein;protein_id=CAL21485.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3208660	3208725	.	-	.	ID=id6878;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3208753	3208818	.	-	.	ID=id6879;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3208834	3208899	.	-	.	ID=id6880;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3208939	3209004	.	-	.	ID=id6881;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3209017	3209082	.	-	.	ID=id6882;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3209143	3209208	.	-	.	ID=id6883;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3209221	3209277	.	-	.	ID=id6884;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3209317	3209382	.	-	.	ID=id6885;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3209398	3209463	.	-	.	ID=id6886;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3209515	3209580	.	-	.	ID=id6887;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3209939	3211426	.	-	.	ID=gene2838;Name=engA;gbkey=Gene;gene=engA;gene_biotype=protein_coding;locus_tag=YPO2875
AL590842.1	EMBL	CDS	3209939	3211426	.	-	0	ID=cds2795;Parent=gene2838;Dbxref=GOA:Q8ZCT9,InterPro:IPR005225,InterPro:IPR006073,InterPro:IPR015946,InterPro:IPR016484,InterPro:IPR027417,NCBI_GP:CAL21486.1;Name=CAL21486.1;Note=Similar to Escherichia coli probable GTP-binding protein EngA SW:ENGA_ECOLI (P77254) (490 aa) fasta scores: E(): 0%2C 81.4%25 id in 495 aa%2C and to Vibrio cholerae GTP-binding protein VC0763 TR:Q9KTW7 (EMBL:AE004161) (494 aa) fasta scores: E(): 0%2C 71.3%25 id in 499 aa;gbkey=CDS;gene=engA;inference=similar to sequence:INSDC:AE004161;product=putative GTP-binding protein;protein_id=CAL21486.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3210368	3211213	.	-	.	ID=id6888;Note=Pfam match to entry PF01926 MMR_HSR1%2C GTPase of unknown function%2C score 182.00%2C E-value 9.7e-51;gbkey=misc_feature;gene=engA;inference=protein motif:PF01926
AL590842.1	EMBL	sequence_feature	3210764	3210787	.	-	.	ID=id6889;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=engA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3211379	3211402	.	-	.	ID=id6890;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=engA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3211574	3212755	.	-	.	ID=gene2839;Name=yfgL;gbkey=Gene;gene=yfgL;gene_biotype=protein_coding;locus_tag=YPO2876
AL590842.1	EMBL	CDS	3211574	3212755	.	-	0	ID=cds2796;Parent=gene2839;Dbxref=GOA:Q7CJM5,InterPro:IPR011047,InterPro:IPR017687,InterPro:IPR018391,InterPro:IPR027295,NCBI_GP:CAL21487.1;Name=CAL21487.1;Note=Similar to Escherichia coli hypothetical protein YfgL SW:YFGL_ECOLI (P77774) (392 aa) fasta scores: E(): 0%2C76.3%25 id in 393 aa%2C and to Salmonella typhimurium hypothetical protein TR:AAG31169 (EMBL:AF314961) (392 aa) fasta scores: E(): 0%2C 76.3%25 id in 393 aa;gbkey=CDS;gene=yfgL;inference=similar to sequence:INSDC:AF314961;product=putative lipoprotein;protein_id=CAL21487.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3211874	3211987	.	-	.	ID=id6891;Note=Pfam match to entry PF01011 Bacterial_PQQ%2C PQQ enzyme repeat%2C score 33.90%2C E-value 3.8e-06;gbkey=misc_feature;gene=yfgL;inference=protein motif:PF01011
AL590842.1	EMBL	sequence_feature	3212027	3212140	.	-	.	ID=id6892;Note=Pfam match to entry PF01011 Bacterial_PQQ%2C PQQ enzyme repeat%2C score 16.60%2C E-value 0.3;gbkey=misc_feature;gene=yfgL;inference=protein motif:PF01011
AL590842.1	EMBL	sequence_feature	3212162	3212275	.	-	.	ID=id6893;Note=Pfam match to entry PF01011 Bacterial_PQQ%2C PQQ enzyme repeat%2C score 21.90%2C E-value 0.015;gbkey=misc_feature;gene=yfgL;inference=protein motif:PF01011
AL590842.1	EMBL	sequence_feature	3212282	3212395	.	-	.	ID=id6894;Note=Pfam match to entry PF01011 Bacterial_PQQ%2C PQQ enzyme repeat%2C score 26.10%2C E-value 0.00085;gbkey=misc_feature;gene=yfgL;inference=protein motif:PF01011
AL590842.1	EMBL	sequence_feature	3212435	3212548	.	-	.	ID=id6895;Note=Pfam match to entry PF01011 Bacterial_PQQ%2C PQQ enzyme repeat%2C score 23.40%2C E-value 0.0055;gbkey=misc_feature;gene=yfgL;inference=protein motif:PF01011
AL590842.1	EMBL	sequence_feature	3212696	3212728	.	-	.	ID=id6896;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=yfgL;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	3212767	3213402	.	-	.	ID=gene2840;Name=yfgM;gbkey=Gene;gene=yfgM;gene_biotype=protein_coding;locus_tag=YPO2877
AL590842.1	EMBL	CDS	3212767	3213402	.	-	0	ID=cds2797;Parent=gene2840;Dbxref=InterPro:IPR011990,InterPro:IPR018704,InterPro:IPR026039,UniProtKB/TrEMBL:Q7CJM6,NCBI_GP:CAL21488.1;Name=CAL21488.1;Note=Similar to Escherichia coli hypothetical protein YfgM SW:YFGM_ECOLI (P76576) (206 aa) fasta scores: E(): 0%2C56.7%25 id in 210 aa%2C and to Vibrio cholerae hypothetical protein VC0761 vc0761 TR:Q9KTW9 (EMBL:AE004161) (204 aa) fasta scores: E(): 4e-22%2C 39.6%25 id in 212 aa;gbkey=CDS;gene=yfgM;inference=similar to sequence:INSDC:AE004161;product=putative membrane protein;protein_id=CAL21488.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3213274	3213339	.	-	.	ID=id6897;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=yfgM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3213416	3214690	.	-	.	ID=gene2841;Name=hisS;gbkey=Gene;gene=hisS;gene_biotype=protein_coding;locus_tag=YPO2878
AL590842.1	EMBL	CDS	3213416	3214690	.	-	0	ID=cds2798;Parent=gene2841;Dbxref=GOA:Q8ZCT6,InterPro:IPR004154,InterPro:IPR004516,InterPro:IPR006195,InterPro:IPR015807,NCBI_GP:CAL21489.1;Name=CAL21489.1;Note=Similar to Escherichia coli histidyl-tRNA synthetase HisS SW:SYH_ECOLI (P04804) (423 aa) fasta scores: E(): 0%2C82.0%25 id in 423 aa%2C and to Salmonella typhimurium histidyl-tRNA synthetase HisS SW:SYH_SALTY (O52765) (423 aa) fasta scores: E(): 0%2C 82.0%25 id in 423 aa;gbkey=CDS;gene=hisS;product=histidyl-tRNA synthetase;protein_id=CAL21489.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3213467	3214528	.	-	.	ID=id6898;Note=Pfam match to entry PF00587 tRNA-synt_2b%2C tRNA synthetase class II (G%2C H%2C P%2C S and T)%2C score 303.40%2CE-value 2.7e-87;gbkey=misc_feature;gene=hisS;inference=protein motif:PF00587
AL590842.1	EMBL	sequence_feature	3213746	3213775	.	-	.	ID=id6899;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.;gbkey=misc_feature;gene=hisS;inference=protein motif:ProSite:PS00339
AL590842.1	EMBL	gene	3214899	3216026	.	-	.	ID=gene2842;Name=aarC;gbkey=Gene;gene=aarC;gene_biotype=protein_coding;gene_synonym=gcpE;locus_tag=YPO2879
AL590842.1	EMBL	CDS	3214899	3216026	.	-	0	ID=cds2799;Parent=gene2842;Dbxref=GOA:P58672,InterPro:IPR004588,InterPro:IPR013785,InterPro:IPR016425,InterPro:IPR029065,NCBI_GP:CAL21490.1;Name=CAL21490.1;Note=Similar to Providencia stuartii essential protein%2Cinvolved in the density-dependent regulator of the 2'-N-acetyltransferase%2C AarC SW:GCPE_PROST (P72241) (365 aa) fasta scores: E(): 0%2C 88.1%25 id in 361 aa%2C and to Escherichia coli essential hypotheical protein%2C GcpE SW:GCPE_ECOLI (P27433) (372 aa) fasta scores: E(): 0%2C 86.8%25 id in 372 aa;gbkey=CDS;gene=aarC;product=putative acetyltransferase;protein_id=CAL21490.1;transl_table=11
AL590842.1	EMBL	gene	3216088	3217125	.	-	.	ID=gene2843;Name=yfgA;gbkey=Gene;gene=yfgA;gene_biotype=protein_coding;locus_tag=YPO2880
AL590842.1	EMBL	CDS	3216088	3217125	.	-	0	ID=cds2800;Parent=gene2843;Dbxref=GOA:Q7CJM7,InterPro:IPR001387,InterPro:IPR010982,InterPro:IPR023690,InterPro:IPR025194,NCBI_GP:CAL21491.1;Name=CAL21491.1;Note=Similar to Escherichia coli hypothetical protein YfgA SW:YFGA_ECOLI (P27434) (337 aa) fasta scores: E(): 0%2C57.5%25 id in 348 aa%2C and to Vibrio cholerae hypothetical protein VC0758 vc0758 TR:Q9KTX2 (EMBL:AE004161) (393 aa) fasta scores: E(): 1.2e-28%2C 36.5%25 id in 370 aa;gbkey=CDS;gene=yfgA;inference=similar to sequence:INSDC:AE004161;product=putative DNA-binding protein;protein_id=CAL21491.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3216727	3216792	.	-	.	ID=id6900;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=yfgA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3216913	3217071	.	-	.	ID=id6901;Note=Pfam match to entry PF01381 HTH_3%2C Helix-turn-helix%2Cscore 33.60%2C E-value 4.7e-06;gbkey=misc_feature;gene=yfgA;inference=protein motif:PF01381
AL590842.1	EMBL	sequence_feature	3216979	3217044	.	-	.	ID=id6902;Note=Predicted helix-turn-helix motif with score 1605 (+4.65 SD) at aa 28-49%2C sequence LTQQTVAERLCLKVSTIRDIEE;gbkey=misc_feature;gene=yfgA
AL590842.1	EMBL	gene	3217115	3217864	.	-	.	ID=gene2844;Name=YPO2881;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2881
AL590842.1	EMBL	CDS	3217115	3217864	.	-	0	ID=cds2801;Parent=gene2844;Dbxref=InterPro:IPR011990,InterPro:IPR013026,InterPro:IPR013105,InterPro:IPR013360,InterPro:IPR019734,UniProtKB/TrEMBL:Q7CJM8,NCBI_GP:CAL21492.1;Name=CAL21492.1;Note=Similar to Pseudomonas aeruginosa type 4 fimbrial biogenesis protein PilF TR:AAG07192 (EMBL:AE004798) (252 aa) fasta scores: E(): 2.8e-15%2C 29.8%25 id in 245 aa%2C and to Vibrio cholerae putative fimbrial biogenesis and twitching motility protein VC1612 TR:Q9KRM4 (EMBL:AE004238) (237 aa) fasta scores: E(): 7.1e-23%2C 38.4%25 id in 219 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004798;product=putative fimbrial biogenesis protein;protein_id=CAL21492.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3217355	3217456	.	-	.	ID=id6903;Note=Pfam match to entry PF00515 TPR%2C TPR Domain%2C score 16.30%2C E-value 0.72;gbkey=misc_feature;inference=protein motif:PF00515
AL590842.1	EMBL	sequence_feature	3217565	3217666	.	-	.	ID=id6904;Note=Pfam match to entry PF00515 TPR%2C TPR Domain%2C score 7.50%2C E-value 7.4;gbkey=misc_feature;inference=protein motif:PF00515
AL590842.1	EMBL	sequence_feature	3217667	3217768	.	-	.	ID=id6905;Note=Pfam match to entry PF00515 TPR%2C TPR Domain%2C score 26.50%2C E-value 0.00062;gbkey=misc_feature;inference=protein motif:PF00515
AL590842.1	EMBL	sequence_feature	3217808	3217840	.	-	.	ID=id6906;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	3218018	3219214	.	-	.	ID=gene2845;Name=YPO2882;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2882
AL590842.1	EMBL	CDS	3218018	3219214	.	-	0	ID=cds2802;Parent=gene2845;Dbxref=GOA:Q7CJM9,InterPro:IPR004383,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR013785,InterPro:IPR027492,NCBI_GP:CAL21493.1;Name=CAL21493.1;Note=Similar to Escherichia coli hypothetical protein YfgB SW:YFGB_ECOLI (P36979) (384 aa) fasta scores: E(): 0%2C86.2%25 id in 378 aa%2C and to Haemophilus influenzae hypothetical protein HI0365 SW:YFGB_HAEIN (P44665) (390 aa) fasta scores: E(): 0%2C 75.9%25 id in 378 aa. Possible alternative translational start sites;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21493.1;transl_table=11
AL590842.1	EMBL	gene	3219476	3219904	.	-	.	ID=gene2846;Name=ndk;gbkey=Gene;gene=ndk;gene_biotype=protein_coding;locus_tag=YPO2883
AL590842.1	EMBL	CDS	3219476	3219904	.	-	0	ID=cds2803;Parent=gene2846;Dbxref=GOA:Q8ZCT2,InterPro:IPR001564,InterPro:IPR023005,NCBI_GP:CAL21494.1;Name=CAL21494.1;Note=Similar to Escherichia coli nucleoside diphosphate kinase Ndk SW:NDK_ECOLI (P24233) (142 aa) fasta scores: E(): 0%2C 77.3%25 id in 141 aa%2C and to Vibrio cholerae nucleoside diphosphate kinase VC0756 TR:Q9KTX4 (EMBL:AE004161) (142 aa) fasta scores: E(): 0%2C 67.4%25 id in 141 aa;gbkey=CDS;gene=ndk;inference=similar to sequence:INSDC:AE004161;product=nucleoside diphosphate kinase;protein_id=CAL21494.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3219482	3219895	.	-	.	ID=id6907;Note=Pfam match to entry PF00334 NDK%2C Nucleoside diphosphate kinases%2C score 290.80%2C E-value 1.7e-83;gbkey=misc_feature;gene=ndk;inference=protein motif:PF00334
AL590842.1	EMBL	sequence_feature	3219539	3219565	.	-	.	ID=id6908;Note=PS00469 Nucleoside diphosphate kinases active site.;gbkey=misc_feature;gene=ndk;inference=protein motif:ProSite:PS00469
AL590842.1	EMBL	gene	3220231	3222651	.	-	.	ID=gene2847;Name=YPO2884;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2884
AL590842.1	EMBL	CDS	3220231	3222651	.	-	0	ID=cds2804;Parent=gene2847;Dbxref=GOA:Q7CJN0,InterPro:IPR001064,InterPro:IPR011024,InterPro:IPR015059,InterPro:IPR015185,UniProtKB/TrEMBL:Q7CJN0,NCBI_GP:CAL21495.1;Name=CAL21495.1;Note=No significant database matches;gbkey=CDS;product=putative exported protein;protein_id=CAL21495.1;transl_table=11
AL590842.1	EMBL	gene	3222826	3223083	.	+	.	ID=gene2848;Name=YPO2885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2885
AL590842.1	EMBL	CDS	3222826	3223083	.	+	0	ID=cds2805;Parent=gene2848;Dbxref=UniProtKB/TrEMBL:Q7CJN1,NCBI_GP:CAL21496.1;Name=CAL21496.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21496.1;transl_table=11
AL590842.1	EMBL	gene	3223437	3227729	.	+	.	ID=gene2849;Name=yapA;gbkey=Gene;gene=yapA;gene_biotype=protein_coding;locus_tag=YPO2886
AL590842.1	EMBL	CDS	3223437	3227729	.	+	0	ID=cds2806;Parent=gene2849;Dbxref=GOA:Q0WD17,InterPro:IPR004899,InterPro:IPR005546,InterPro:IPR006315,InterPro:IPR011050,InterPro:IPR012332,UniProtKB/TrEMBL:Q0WD17,NCBI_GP:CAL21497.1;Name=CAL21497.1;Note=Previously sequenced as Yersinia pestis putative autotransporter protein YapA TR:CAC14220 (EMBL:AJ277624) (1432 aa) fasta scores: E(): 0%2C 100.0%25 id in 1430 aa. C-terminal region similar to Escherichia coli glycoprotein autotransporter TibA TR:Q9XD84 (EMBL:AF109215) (989 aa) fasta scores: E(): 0%2C 27.6%25 id in 954 aa. Contains coiled-coiled domains%2C residues 330 to 369 and 399 to 480.;gbkey=CDS;gene=yapA;inference=similar to sequence:INSDC:AJ277624;product=putative autotransporter protein;protein_id=CAL21497.1;transl_table=11
AL590842.1	EMBL	pseudogene	3228287	3231796	.	+	.	ID=gene2850;Name=yapB;gbkey=Gene;gene=yapB;gene_biotype=pseudogene;locus_tag=YPO2887;pseudo=true
AL590842.1	EMBL	CDS	3228287	3231796	.	+	0	ID=cds2807;Parent=gene2850;Note=Previously sequenced as Yersinia pestis putative autotransporter protein YapB TR:CAC14221 (EMBL:AJ277625) (1052 aa) fasta scores: E(): 0%2C 99.8%25 id in 1049 aa. C-terminus Similar to Escherichia coli glycoprotein autotransporter TibA TR:Q9XD84 (EMBL:AF109215) (989 aa) fasta scores: E(): 4.3e-29%2C 28.7%25 id in 835 aa. Contains coiled-coiled domains%2C residues 350 to 404. Probable pseudogene%2C C-terminus is highly similar to%2C but truncated in comparison to%2C the YPO2886 C-terminal region. Contains a frameshift after codon 1048. Effect on function not known. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=yapB;inference=similar to sequence:INSDC:AJ277625;product=putative autotransporter protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	3228320	3228388	.	+	.	ID=id6909;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=yapB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3232069	3233022	.	-	.	ID=gene2851;Name=YPO2888;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2888
AL590842.1	EMBL	CDS	3232069	3233022	.	-	0	ID=cds2808;Parent=gene2851;Dbxref=InterPro:IPR009839,InterPro:IPR027945,UniProtKB/TrEMBL:Q7CJN2,NCBI_GP:CAL21499.1;Name=CAL21499.1;Note=no significant database hits%2C C-terminal region similar to Escherichia coli protein that enhances serine-dependent growth inhibition%2C SseB SW:SSEB_ECOLI (P31143) (261 aa) fasta scores: E(): 5.4e-26%2C 42.9%25 id in 268 aa. N-terminus contains a small amino acid repeat%2Cresidues 9 to 28%2C DD x4;gbkey=CDS;product=hypothetical protein;protein_id=CAL21499.1;transl_table=11
AL590842.1	EMBL	gene	3233101	3234399	.	-	.	ID=gene2852;Name=pepB;gbkey=Gene;gene=pepB;gene_biotype=protein_coding;locus_tag=YPO2889
AL590842.1	EMBL	CDS	3233101	3234399	.	-	0	ID=cds2809;Parent=gene2852;Dbxref=GOA:P58475,InterPro:IPR000819,InterPro:IPR008330,InterPro:IPR011356,NCBI_GP:CAL21500.1;Name=CAL21500.1;Note=Similar to Salmonella typhimurium acidic amino acid-specific leucyl aminopeptidase%2C peptidase B PepB TR:Q9RF52 (EMBL:AF201078) (427 aa) fasta scores: E(): 0%2C76.8%25 id in 426 aa%2C and to Escherichia coli peptidase B PepB SW:PEPB_ECOLI (P37095) (427 aa) fasta scores: E(): 0%2C75.8%25 id in 426 aa;gbkey=CDS;gene=pepB;inference=similar to sequence:INSDC:AF201078;product=peptidase B;protein_id=CAL21500.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3233212	3234393	.	-	.	ID=id6910;Note=Pfam match to entry PF00883 Peptidase_M17%2C Cytosol aminopeptidase family%2C score 535.40%2C E-value 4e-157;gbkey=misc_feature;gene=pepB;inference=protein motif:PF00883
AL590842.1	EMBL	sequence_feature	3233551	3233574	.	-	.	ID=id6911;Note=PS00631 Cytosol aminopeptidase signature.;gbkey=misc_feature;gene=pepB;inference=protein motif:ProSite:PS00631
AL590842.1	EMBL	gene	3234539	3234739	.	-	.	ID=gene2853;Name=YPO2890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2890
AL590842.1	EMBL	CDS	3234539	3234739	.	-	0	ID=cds2810;Parent=gene2853;Dbxref=GOA:Q7CJN3,InterPro:IPR007479,UniProtKB/TrEMBL:Q7CJN3,NCBI_GP:CAL21501.1;Name=CAL21501.1;Note=Similar to Escherichia coli hypothetical protein YfhJ SW:YFHJ_ECOLI (P37096) (66 aa) fasta scores: E(): 9.4e-23%2C 77.3%25 id in 66 aa%2C and to Haemophilus influenzae hypothetical protein HI0371 SW:YFHJ_HAEIN (P44668) (64 aa) fasta scores: E(): 4.9e-20%2C 70.3%25 id in 64 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21501.1;transl_table=11
AL590842.1	EMBL	gene	3234769	3235104	.	-	.	ID=gene2854;Name=fdx;gbkey=Gene;gene=fdx;gene_biotype=protein_coding;locus_tag=YPO2891
AL590842.1	EMBL	CDS	3234769	3235104	.	-	0	ID=cds2811;Parent=gene2854;Dbxref=GOA:Q7CJN4,InterPro:IPR001041,InterPro:IPR001055,InterPro:IPR011536,InterPro:IPR012675,InterPro:IPR018298,UniProtKB/TrEMBL:Q7CJN4,NCBI_GP:CAL21502.1;Name=CAL21502.1;Note=Similar to Escherichia coli adrenodoxin family ferredoxin [2Fe-2S] Fdx SW:FER_ECOLI (P25528) (110 aa) fasta scores: E(): 0%2C 91.8%25 id in 110 aa%2C and to Vibrio cholerae ferredoxin VC0753 TR:Q9KTX7 (EMBL:AE004160) (139 aa) fasta scores: E(): 0%2C 84.5%25 id in 110 aa;gbkey=CDS;gene=fdx;inference=similar to sequence:INSDC:AE004160;product=adrenodoxin family ferredoxin;protein_id=CAL21502.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3234826	3235077	.	-	.	ID=id6912;Note=Pfam match to entry PF00111 fer2%2C 2Fe-2S iron-sulfur cluster binding domains%2C score 70.60%2C E-value 3.3e-17;gbkey=misc_feature;gene=fdx;inference=protein motif:PF00111
AL590842.1	EMBL	sequence_feature	3234949	3234981	.	-	.	ID=id6913;Note=PS00814 Adrenodoxin family%2C iron-sulfur binding region signature.;gbkey=misc_feature;gene=fdx;inference=protein motif:ProSite:PS00814
AL590842.1	EMBL	gene	3235107	3237059	.	-	.	ID=gene2855;Name=hsc;gbkey=Gene;gene=hsc;gene_biotype=protein_coding;gene_synonym=hscA;locus_tag=YPO2892
AL590842.1	EMBL	CDS	3235107	3237059	.	-	0	ID=cds2812;Parent=gene2855;Dbxref=GOA:Q8ZCS5,InterPro:IPR010236,InterPro:IPR013126,InterPro:IPR018181,InterPro:IPR029047,InterPro:IPR029048,NCBI_GP:CAL21503.1;Name=CAL21503.1;Note=Similar to Escherichia coli cold shock-induced chaperone protein HscA SW:HSCA_ECOLI (P36541) (616 aa) fasta scores: E(): 0%2C 78.6%25 id in 650 aa%2C and to Vibrio cholerae chaperone protein HscA TR:Q9KTX8 (EMBL:AE004160) (616 aa) fasta scores: E(): 0%2C 68.7%25 id in 651 aa. CDS contains an insert relative to other orthologues%2C residues 48 to 84. DNA encoding this region contains imperfect repeats. Effect on function not known.;gbkey=CDS;gene=hsc;inference=similar to sequence:INSDC:AE004160;product=chaperone protein HscA;protein_id=CAL21503.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3235155	3236999	.	-	.	ID=id6914;Note=Pfam match to entry PF00012 HSP70%2C Hsp70 protein%2Cscore 821.30%2C E-value 3.5e-243;gbkey=misc_feature;gene=hsc;inference=protein motif:PF00012
AL590842.1	EMBL	sequence_feature	3235920	3235964	.	-	.	ID=id6915;Note=PS01036 Heat shock hsp70 proteins family signature 3.;gbkey=misc_feature;gene=hsc;inference=protein motif:ProSite:PS01036
AL590842.1	EMBL	sequence_feature	3236304	3236345	.	-	.	ID=id6916;Note=PS00329 Heat shock hsp70 proteins family signature 2.;gbkey=misc_feature;gene=hsc;inference=protein motif:ProSite:PS00329
AL590842.1	EMBL	sequence_feature	3236825	3236914	.	-	.	ID=id6917;Note=Imperfect repeat%2C TAGC(C/A)G(A/G)T(G/C)AACAG(T/C)TAA x5;gbkey=misc_feature;gene=hsc
AL590842.1	EMBL	sequence_feature	3236967	3236990	.	-	.	ID=id6918;Note=PS00297 Heat shock hsp70 proteins family signature 1.;gbkey=misc_feature;gene=hsc;inference=protein motif:ProSite:PS00297
AL590842.1	EMBL	gene	3237302	3237826	.	-	.	ID=gene2856;Name=hscB;gbkey=Gene;gene=hscB;gene_biotype=protein_coding;locus_tag=YPO2893
AL590842.1	EMBL	CDS	3237302	3237826	.	-	0	ID=cds2813;Parent=gene2856;Dbxref=GOA:Q8ZCS4,InterPro:IPR001623,InterPro:IPR004640,InterPro:IPR009073,NCBI_GP:CAL21504.1;Name=CAL21504.1;Note=Similar to Escherichia coli cold shock-induced chaperone protein HscB SW:HSCB_ECOLI (P36540) (171 aa) fasta scores: E(): 0%2C 66.7%25 id in 171 aa%2C and to Vibrio cholerae chaperone protein HscB TR:Q9KTX9 (EMBL:AE004160) (171 aa) fasta scores: E(): 6.5e-30%2C 50.6%25 id in 170 aa;gbkey=CDS;gene=hscB;inference=similar to sequence:INSDC:AE004160;product=chaperone protein HscB;protein_id=CAL21504.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3237605	3237823	.	-	.	ID=id6919;Note=Pfam match to entry PF00226 DnaJ%2C DnaJ domain%2C score 46.50%2C E-value 5.8e-10;gbkey=misc_feature;gene=hscB;inference=protein motif:PF00226
AL590842.1	EMBL	gene	3237937	3238260	.	-	.	ID=gene2857;Name=YPO2894;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2894
AL590842.1	EMBL	CDS	3237937	3238260	.	-	0	ID=cds2814;Parent=gene2857;Dbxref=GOA:Q8ZCS3,InterPro:IPR000361,InterPro:IPR011302,InterPro:IPR016092,InterPro:IPR017870,NCBI_GP:CAL21505.1;Name=CAL21505.1;Note=Similar to Escherichia coli hypothetical protein YfhF SW:YFHF_ECOLI (P36539) (107 aa) fasta scores: E(): 0%2C79.4%25 id in 107 aa%2C and to Vibrio cholerae HesB family protein VC0750 TR:Q9KTY0 (EMBL:AE004160) (107 aa) fasta scores: E(): 2.5e-31%2C 73.8%25 id in 107 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004160;product=conserved hypothetical protein;protein_id=CAL21505.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3237943	3238257	.	-	.	ID=id6920;Note=Pfam match to entry PF01521 HesB-like%2C HesB-like domain%2C score 190.90%2C E-value 2e-53;gbkey=misc_feature;inference=protein motif:PF01521
AL590842.1	EMBL	sequence_feature	3237946	3237999	.	-	.	ID=id6921;Note=PS01152 Hypothetical hesB/yadR/yfhF family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01152
AL590842.1	EMBL	gene	3238530	3238916	.	-	.	ID=gene2858;Name=nifU;gbkey=Gene;gene=nifU;gene_biotype=protein_coding;locus_tag=YPO2895
AL590842.1	EMBL	CDS	3238530	3238916	.	-	0	ID=cds2815;Parent=gene2858;Dbxref=GOA:Q7CJN6,InterPro:IPR002871,InterPro:IPR011339,UniProtKB/TrEMBL:Q7CJN6,NCBI_GP:CAL21506.1;Name=CAL21506.1;Note=Similar to Escherichia coli NifU-like protein NifU SW:NIFU_ECOLI (P77310) (128 aa) fasta scores: E(): 0%2C 89.8%25 id in 128 aa%2C and to Vibrio cholerae NifU-related protein VC0749 TR:Q9KTY1 (EMBL:AE004160) (127 aa) fasta scores: E(): 0%2C 86.4%25 id in 125 aa;gbkey=CDS;gene=nifU;inference=similar to sequence:INSDC:AE004160;product=NifU family protein;protein_id=CAL21506.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3238533	3238913	.	-	.	ID=id6922;Note=Pfam match to entry PF01592 NifU_N%2C NifU-like N terminal domain%2C score 280.10%2C E-value 2.8e-80;gbkey=misc_feature;gene=nifU;inference=protein motif:PF01592
AL590842.1	EMBL	gene	3238947	3240176	.	-	.	ID=gene2859;Name=iscS;gbkey=Gene;gene=iscS;gene_biotype=protein_coding;gene_synonym=nifS,yfhO;locus_tag=YPO2896
AL590842.1	EMBL	CDS	3238947	3240176	.	-	0	ID=cds2816;Parent=gene2859;Dbxref=GOA:Q7CJN7,InterPro:IPR000192,InterPro:IPR010240,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR016454,InterPro:IPR020578,UniProtKB/TrEMBL:Q7CJN7,NCBI_GP:CAL21507.1;Name=CAL21507.1;Note=Similar to Azotobacter vinelandii pyridoxal phosphate-dependent L-cysteine desulfurase IscS TR:O31269 (EMBL:AF010139) (404 aa) fasta scores: E(): 0%2C 72.0%25 id in 404 aa%2C and to Escherichia coli IscS protein homologue YfhO SW:NIFS_ECOLI (P39171) (404 aa) fasta scores: E(): 0%2C 88.9%25 id in 404 aa. Similar to YPO2138 (51.3%25 identity in 386 aa overlap);gbkey=CDS;gene=iscS;inference=similar to sequence:INSDC:AF010139;product=putative aminotransferase;protein_id=CAL21507.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3239055	3240119	.	-	.	ID=id6923;Note=Pfam match to entry PF00266 aminotran_5%2CAminotransferases class-V%2C score 398.20%2C E-value 7.7e-116;gbkey=misc_feature;gene=iscS;inference=protein motif:PF00266
AL590842.1	EMBL	sequence_feature	3239514	3239573	.	-	.	ID=id6924;Note=PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site.;gbkey=misc_feature;gene=iscS;inference=protein motif:ProSite:PS00595
AL590842.1	EMBL	gene	3240230	3240724	.	-	.	ID=gene2860;Name=YPO2897;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2897
AL590842.1	EMBL	CDS	3240230	3240724	.	-	0	ID=cds2817;Parent=gene2860;Dbxref=GOA:Q0WD07,InterPro:IPR000944,InterPro:IPR010242,InterPro:IPR011991,NCBI_GP:CAL21508.1;Name=CAL21508.1;Note=Similar to Escherichia coli hypothetical protein YfhP SW:YFHP_ECOLI (P77484) (162 aa) fasta scores: E(): 0%2C79.4%25 id in 165 aa%2C and to Vibrio cholerae hypothetical protein VC0747 TR:Q9KTY3 (EMBL:AE004160) (188 aa) fasta scores: E(): 0%2C 79.7%25 id in 143 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004160;product=conserved hypothetical protein;protein_id=CAL21508.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3240362	3240724	.	-	.	ID=id6925;Note=Pfam match to entry PF02082 UPF0074%2C Uncharacterized protein family UPF0074%2C score 233.00%2C E-value 4.2e-66;gbkey=misc_feature;inference=protein motif:PF02082
AL590842.1	EMBL	sequence_feature	3240524	3240580	.	-	.	ID=id6926;Note=PS01332 Uncharacterized protein family UPF0074 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01332
AL590842.1	EMBL	sequence_feature	3240584	3240649	.	-	.	ID=id6927;Note=Predicted helix-turn-helix motif with score 1222 (+3.35 SD) at aa 26-47%2C sequence VPLADISERQGISLSYLEQLFS;gbkey=misc_feature
AL590842.1	EMBL	gene	3240880	3241653	.	-	.	ID=gene2861;Name=YPO2898;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2898
AL590842.1	EMBL	CDS	3240880	3241653	.	-	0	ID=cds2818;Parent=gene2861;Dbxref=GOA:Q7CJN8,InterPro:IPR001537,InterPro:IPR004384,InterPro:IPR029026,InterPro:IPR029028,NCBI_GP:CAL21509.1;Name=CAL21509.1;Note=Similar to Escherichia coli hypothetical protein TR:P77438 (EMBL:AE000339) (246 aa) fasta scores: E(): 0%2C81.8%25 id in 242 aa%2C and to Vibrio cholerae possible TrmH family RNA methyltransferase VC0746 TR:Q9KTY4 (EMBL:AE004160) (244 aa) fasta scores: E(): 0%2C 64.0%25 id in 239 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004160;product=putative SpoU-family rRNA methylase;protein_id=CAL21509.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3241192	3241644	.	-	.	ID=id6928;Note=Pfam match to entry PF00588 SpoU_methylase%2C SpoU rRNA Methylase family%2C score 105.70%2C E-value 8.8e-28;gbkey=misc_feature;inference=protein motif:PF00588
AL590842.1	EMBL	gene	3241772	3242575	.	+	.	ID=gene2862;Name=suhB;gbkey=Gene;gene=suhB;gene_biotype=protein_coding;locus_tag=YPO2899
AL590842.1	EMBL	CDS	3241772	3242575	.	+	0	ID=cds2819;Parent=gene2862;Dbxref=GOA:Q7CJN9,InterPro:IPR000760,InterPro:IPR020550,InterPro:IPR020583,InterPro:IPR022337,UniProtKB/TrEMBL:Q7CJN9,NCBI_GP:CAL21510.1;Name=CAL21510.1;Note=Similar to Lycopersicon esculentum myo-inositol monophosphatase IMP1 SW:MYO1_LYCES (P54926) (273 aa) fasta scores: E(): 2.5e-29%2C 35.7%25 id in 263 aa%2C and to Escherichia coli extragenic suppressor protein SuhB TR:BAA16435 (EMBL:M34828) (267 aa) fasta scores: E(): 0%2C83.9%25 id in 267 aa;gbkey=CDS;gene=suhB;inference=similar to sequence:INSDC:M34828;product=putative inositol monophosphatase family protein;protein_id=CAL21510.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3241961	3242458	.	+	.	ID=id6929;Note=Pfam match to entry PF00459 inositol_P%2C Inositol monophosphatase family%2C score 278.60%2C E-value 8.2e-80;gbkey=misc_feature;gene=suhB;inference=protein motif:PF00459
AL590842.1	EMBL	sequence_feature	3242012	3242053	.	+	.	ID=id6930;Note=PS00629 Inositol monophosphatase family signature 1.;gbkey=misc_feature;gene=suhB;inference=protein motif:ProSite:PS00629
AL590842.1	EMBL	sequence_feature	3242402	3242446	.	+	.	ID=id6931;Note=PS00630 Inositol monophosphatase family signature 2.;gbkey=misc_feature;gene=suhB;inference=protein motif:ProSite:PS00630
AL590842.1	EMBL	repeat_region	3242634	3243345	.	+	.	ID=id6932;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	3242779	3243237	.	+	.	ID=gene2863;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO2900
AL590842.1	EMBL	CDS	3242779	3243237	.	+	0	ID=cds2820;Parent=gene2863;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL21511.1;Name=CAL21511.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL21511.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3242833	3243144	.	+	.	ID=id6933;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	3243384	3244406	.	-	.	ID=gene2864;Name=YPO2901;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2901
AL590842.1	EMBL	CDS	3243384	3244406	.	-	0	ID=cds2821;Parent=gene2864;Dbxref=GOA:Q0WD03,InterPro:IPR011541,UniProtKB/TrEMBL:Q0WD03,NCBI_GP:CAL21512.1;Name=CAL21512.1;Note=Similar to Haemophilus influenzae hypothetical protein HI1248 SW:YC48_HAEIN (P44136) (322 aa) fasta scores: E(): 0%2C 38.1%25 id in 310 aa%2C and to Treponema pallidum conserved hypothetical integral membrane protein TP0558 TR:O83569 (EMBL:AE001231) (302 aa) fasta scores: E(): 2.1e-06%2C 24.9%25 id in 281 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE001231;product=putative membrane protein;protein_id=CAL21512.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3243432	3243497	.	-	.	ID=id6934;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3243561	3243626	.	-	.	ID=id6935;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3243639	3243704	.	-	.	ID=id6936;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3243888	3243938	.	-	.	ID=id6937;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3243984	3244049	.	-	.	ID=id6938;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3244113	3244178	.	-	.	ID=id6939;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3244281	3244346	.	-	.	ID=id6940;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3244397	3245071	.	-	.	ID=gene2865;Name=YPO2902;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2902
AL590842.1	EMBL	CDS	3244397	3245071	.	-	0	ID=cds2822;Parent=gene2865;Dbxref=InterPro:IPR010412,InterPro:IPR016537,UniProtKB/TrEMBL:Q7CJP0,NCBI_GP:CAL21513.1;Name=CAL21513.1;Note=Poor database matches%2C similar to Haemophilus influenzae hypothetical protein HI1249 SW:YC49_HAEIN (P44137) (206 aa) fasta scores: E(): 1.8e-29%2C 44.4%25 id in 207 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL21513.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3244985	3245050	.	-	.	ID=id6941;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3245213	3246574	.	+	.	ID=gene2866;Name=YPO2903;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2903
AL590842.1	EMBL	CDS	3245213	3246574	.	+	0	ID=cds2823;Parent=gene2866;Dbxref=GOA:Q74SP2,InterPro:IPR011608,UniProtKB/TrEMBL:Q74SP2,NCBI_GP:CAL21514.1;Name=CAL21514.1;Note=Similar to Escherichia coli stationary phase inducible protein CsiE SW:CSIE_ECOLI (P54901) (433 aa) fasta scores: E(): 0%2C 37.5%25 id in 443 aa%2C and to Bacillus subtilis possible transcriptional antiterminator protein YjdC TR:O31644 (EMBL:Z99110) (648 aa) fasta scores: E(): 3.8e-06%2C 22.0%25 id in 368 aa. CDS contains an insert%2Cresidues 117 to 137%2C relative to these database matches;gbkey=CDS;inference=similar to sequence:INSDC:Z99110;product=putative RNA-binding protein;protein_id=CAL21514.1;transl_table=11
AL590842.1	EMBL	gene	3246571	3247728	.	-	.	ID=gene2867;Name=hcaT;gbkey=Gene;gene=hcaT;gene_biotype=protein_coding;locus_tag=YPO2904
AL590842.1	EMBL	CDS	3246571	3247728	.	-	0	ID=cds2824;Parent=gene2867;Dbxref=GOA:Q7CJP1,InterPro:IPR000576,InterPro:IPR016196,InterPro:IPR026032,UniProtKB/TrEMBL:Q7CJP1,NCBI_GP:CAL21515.1;Name=CAL21515.1;Note=Similar to Bacillus stearothermophilus maltose permease MalA SW:MALA_BACST (Q45632) (394 aa) fasta scores: E(): 4.2e-12%2C 26.1%25 id in 379 aa%2C and to Escherichia coli probable 3-phenylpropionic acid transporter HcaT SW:HCAT_ECOLI (Q47142) (379 aa) fasta scores: E(): 0%2C 66.6%25 id in 377 aa;gbkey=CDS;gene=hcaT;inference=protein motif:TMHMM:2.0;product=putative transport permease protein;protein_id=CAL21515.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3246610	3246660	.	-	.	ID=id6942;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=hcaT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3246676	3246741	.	-	.	ID=id6943;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=hcaT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3246781	3246846	.	-	.	ID=id6944;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=hcaT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3246877	3246927	.	-	.	ID=id6945;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=hcaT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3246943	3247008	.	-	.	ID=id6946;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=hcaT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3247039	3247104	.	-	.	ID=id6947;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=hcaT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3247189	3247254	.	-	.	ID=id6948;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=hcaT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3247267	3247332	.	-	.	ID=id6949;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=hcaT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3247396	3247449	.	-	.	ID=id6950;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=hcaT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3247462	3247518	.	-	.	ID=id6951;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=hcaT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3247540	3247605	.	-	.	ID=id6952;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=hcaT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3247636	3247701	.	-	.	ID=id6953;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=hcaT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3248080	3248628	.	-	.	ID=gene2868;Name=ail;gbkey=Gene;gene=ail;gene_biotype=protein_coding;locus_tag=YPO2905
AL590842.1	EMBL	CDS	3248080	3248628	.	-	0	ID=cds2825;Parent=gene2868;Dbxref=GOA:Q0WCZ9,InterPro:IPR000758,InterPro:IPR011250,InterPro:IPR017690,InterPro:IPR027385,UniProtKB/TrEMBL:Q0WCZ9,NCBI_GP:CAL21516.1;Name=CAL21516.1;Note=Similar to Yersinia pseudotuberculosis attachment invasion locus protein Ail SW:AIL_YERPS (Q56957) (182 aa) fasta scores: E(): 0%2C 98.4%25 id in 182 aa%2C and to Yersinia enterocolitica attachment invasion locus protein precursor Ail SW:AIL_YEREN (P16454) (178 aa) fasta scores: E(): 0%2C74.3%25 id in 179 aa%2C and to Serratia marcescens outer membrane protein precursor Omp4 TR:Q54470 (EMBL:Z37157) (172 aa) fasta scores: E(): 3.3e-23%2C 43.7%25 id in 183 aa;gbkey=CDS;gene=ail;inference=similar to sequence:INSDC:Z37157;product=attachment invasion locus protein;protein_id=CAL21516.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3248083	3248109	.	-	.	ID=id6954;Note=PS00695 Enterobacterial virulence outer membrane protein signature 2.;gbkey=misc_feature;gene=ail;inference=protein motif:ProSite:PS00695
AL590842.1	EMBL	sequence_feature	3248443	3248469	.	-	.	ID=id6955;Note=PS00694 Enterobacterial virulence outer membrane protein signature 1.;gbkey=misc_feature;gene=ail;inference=protein motif:ProSite:PS00694
AL590842.1	EMBL	gene	3248738	3248959	.	-	.	ID=gene2869;Name=YPO2906;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2906
AL590842.1	EMBL	CDS	3248738	3248959	.	-	0	ID=cds2826;Parent=gene2869;Dbxref=UniProtKB/TrEMBL:Q7CJP2,NCBI_GP:CAL21517.1;Name=CAL21517.1;Note=Poor database matches%2C similar to N-terminal region of Shigella dysenteriae insertion element iso-IS1 protein InsB SW:ISBN_SHIDY (P03832) (131 aa) fasta scores: E(): 4%2C33.9%25 id in 56 aa. Possible gene remanent;gbkey=CDS;product=putative membrane protein;protein_id=CAL21517.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3248759	3248824	.	-	.	ID=id6956;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3249072	3250325	.	-	.	ID=gene2870;Name=glyA;gbkey=Gene;gene=glyA;gene_biotype=protein_coding;locus_tag=YPO2907
AL590842.1	EMBL	CDS	3249072	3250325	.	-	0	ID=cds2827;Parent=gene2870;Dbxref=GOA:Q8ZCR1,InterPro:IPR001085,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR019798,NCBI_GP:CAL21518.1;Name=CAL21518.1;Note=Similar to Salmonella typhimurium serine hydroxymethyltransferase GlyA SW:GLYA_SALTY (P06192) (417 aa) fasta scores: E(): 0%2C 90.2%25 id in 417 aa%2C and to Escherichia coli serine hydroxymethyltransferase GlyA SW:GLYA_ECOLI (P00477) (417 aa) fasta scores: E(): 0%2C 89.9%25 id in 417 aa;gbkey=CDS;gene=glyA;product=serine hydroxymethyltransferase;protein_id=CAL21518.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3249168	3250304	.	-	.	ID=id6957;Note=Pfam match to entry PF00464 SHMT%2C Serine hydroxymethyltransferase%2C score 931.00%2C E-value 2.3e-279;gbkey=misc_feature;gene=glyA;inference=protein motif:PF00464
AL590842.1	EMBL	sequence_feature	3249615	3249665	.	-	.	ID=id6958;Note=PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site.;gbkey=misc_feature;gene=glyA;inference=protein motif:ProSite:PS00096
AL590842.1	EMBL	gene	3250866	3252056	.	+	.	ID=gene2871;Name=fsrB;gbkey=Gene;gene=fsrB;gene_biotype=protein_coding;gene_synonym=hmp,hmpA,hmpX;locus_tag=YPO2908
AL590842.1	EMBL	CDS	3250866	3252056	.	+	0	ID=cds2828;Parent=gene2871;Dbxref=GOA:Q8ZCR0,InterPro:IPR000971,InterPro:IPR001221,InterPro:IPR001433,InterPro:IPR001709,InterPro:IPR008333,InterPro:IPR009050,InterPro:IPR012292,InterPro:IPR017927,InterPro:IPR017938,InterPro:IPR023950,NCBI_GP:CAL21519.1;Name=CAL21519.1;Note=Similar to Escherichia coli flavohemoprotein Hmp SW:HMPA_ECOLI (P24232) (396 aa) fasta scores: E(): 0%2C 63.1%25 id in 396 aa%2C and to Erwinia chrysanthemi pathogenicity determinant%2C flavohemoprotein HmpX SW:HMPA_ERWCH (Q47266) (395 aa) fasta scores: E(): 0%2C 64.7%25 id in 397 aa;gbkey=CDS;gene=fsrB;product=flavohemoprotein;protein_id=CAL21519.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3250866	3251273	.	+	.	ID=id6959;Note=Pfam match to entry PF00042 globin%2C Globin%2C score 92.10%2C E-value 3.9e-25;gbkey=misc_feature;gene=fsrB;inference=protein motif:PF00042
AL590842.1	EMBL	sequence_feature	3251640	3251990	.	+	.	ID=id6960;Note=Pfam match to entry PF00175 oxidored_fad%2COxidoreductase FAD/NAD-binding domain%2C score 74.80%2C E-value 1.8e-18;gbkey=misc_feature;gene=fsrB;inference=protein motif:PF00175
AL590842.1	EMBL	pseudogene	3252487	3253417	.	+	.	ID=gene2872;Name=YPO2909;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO2909;pseudo=true
AL590842.1	EMBL	CDS	3252487	3253417	.	+	0	ID=cds2829;Parent=gene2872;Note=Similar to Escherichia coli hypothetical protein YhfZ SW:YHFZ_ECOLI (P45552) (273 aa) fasta scores: E(): 0%2C52.0%25 id in 273 aa%2C and to Bacillus halodurans hypothetical protein BH0586 TR:Q9KF99 (EMBL:AP001509) (306 aa) fasta scores: E(): 1.9e-29%2C 34.9%25 id in 307 aa. Possible alternative translational start sites. Contains a frameshift after codon 189. Frame shift occurs at a poly A decamer. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=similar to sequence:INSDC:AP001509;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	3253589	3253927	.	-	.	ID=gene2873;Name=glnB;gbkey=Gene;gene=glnB;gene_biotype=protein_coding;locus_tag=YPO2911
AL590842.1	EMBL	CDS	3253589	3253927	.	-	0	ID=cds2830;Parent=gene2873;Dbxref=GOA:Q7CJP6,InterPro:IPR002187,InterPro:IPR002332,InterPro:IPR011322,InterPro:IPR015867,InterPro:IPR017918,UniProtKB/TrEMBL:Q7CJP6,NCBI_GP:CAL21521.1;Name=CAL21521.1;Note=Similar to Klebsiella pneumoniae nitrogen regulatory protein P-II GlnB SW:GLNB_KLEPN (P11671) (112 aa) fasta scores: E(): 0%2C 90.2%25 id in 112 aa%2C and to Escherichia coli nitrogen regulatory protein P-II 1 GlnB SW:GLNB_ECOLI (P05826) (112 aa) fasta scores: E(): 0%2C 90.2%25 id in 112 aa. Similar to YPO3143 (68.8%25 identity in 112 aa overlap);gbkey=CDS;gene=glnB;product=nitrogen regulatory protein P-II;protein_id=CAL21521.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3253592	3253927	.	-	.	ID=id6961;Note=Pfam match to entry PF00543 P-II%2C Nitrogen regulatory protein P-II%2C score 215.00%2C E-value 1.5e-63;gbkey=misc_feature;gene=glnB;inference=protein motif:PF00543
AL590842.1	EMBL	sequence_feature	3253640	3253681	.	-	.	ID=id6962;Note=PS00638 P-II protein C-terminal region signature.;gbkey=misc_feature;gene=glnB;inference=protein motif:ProSite:PS00638
AL590842.1	EMBL	sequence_feature	3253775	3253792	.	-	.	ID=id6963;Note=PS00496 P-II protein urydylation site.;gbkey=misc_feature;gene=glnB;inference=protein motif:ProSite:PS00496
AL590842.1	EMBL	gene	3253942	3255564	.	-	.	ID=gene2874;Name=adgA;gbkey=Gene;gene=adgA;gene_biotype=protein_coding;gene_synonym=nadE;locus_tag=YPO2912
AL590842.1	EMBL	CDS	3253942	3255564	.	-	0	ID=cds2831;Parent=gene2874;Dbxref=GOA:Q7CJP7,InterPro:IPR000132,InterPro:IPR003010,InterPro:IPR003694,InterPro:IPR014445,InterPro:IPR014729,InterPro:IPR022310,UniProtKB/TrEMBL:Q7CJP7,NCBI_GP:CAL21522.1;Name=CAL21522.1;Note=Similar to Rhodobacter capsulatus glutamine-dependent NAD synthetase NadE SW:NADE_RHOCA (Q03638) (552 aa) fasta scores: E(): 0%2C 44.4%25 id in 547 aa%2Cand to Xylella fastidiosa NH3-dependent NAD synthetase XF1961 TR:Q9PC24 (EMBL:AE004015) (545 aa) fasta scores: E(): 0%2C 49.2%25 id in 543 aa;gbkey=CDS;gene=adgA;inference=similar to sequence:INSDC:AE004015;product=putative glutamine-dependent NAD;protein_id=CAL21522.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3254764	3255555	.	-	.	ID=id6964;Note=Pfam match to entry PF00795 CN_hydrolase%2CCarbon-nitrogen hydrolase%2C score 10.40%2C E-value 6.4e-10;gbkey=misc_feature;gene=adgA;inference=protein motif:PF00795
AL590842.1	EMBL	sequence_feature	3255409	3255456	.	-	.	ID=id6965;Note=PS00920 Nitrilases / cyanide hydratase signature 1.;gbkey=misc_feature;gene=adgA;inference=protein motif:ProSite:PS00920
AL590842.1	EMBL	gene	3255724	3257061	.	-	.	ID=gene2875;Name=YPO2914;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2914
AL590842.1	EMBL	CDS	3255724	3257061	.	-	0	ID=cds2832;Parent=gene2875;Dbxref=GOA:Q74SP9,InterPro:IPR001789,InterPro:IPR002078,InterPro:IPR003593,InterPro:IPR009057,InterPro:IPR011006,InterPro:IPR025662,InterPro:IPR025943,InterPro:IPR025944,InterPro:IPR027417,UniProtKB/TrEMBL:Q74SP9,NCBI_GP:CAL21523.1;Name=CAL21523.1;Note=Similar to Escherichia coli labile hydrogenase transcriptional regulatory protein HydG SW:HYDG_ECOLI (P14375) (441 aa) fasta scores: E(): 0%2C 44.9%25 id in 439 aa%2Cand to Escherichia coli hypothetical protein YfhA SW:YFHA_ECOLI (P21712) (444 aa) fasta scores: E(): 0%2C 87.8%25 id in 441 aa. Probable sigma-54 dependent transcription regulatory protein;gbkey=CDS;product=two-component system response regulator;protein_id=CAL21523.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3255958	3256653	.	-	.	ID=id6966;Note=Pfam match to entry PF00158 sigma54%2C Sigma-54 transcription factors%2C score 514.70%2C E-value 6.7e-151;gbkey=misc_feature;inference=protein motif:PF00158
AL590842.1	EMBL	sequence_feature	3255985	3256014	.	-	.	ID=id6967;Note=PS00688 Sigma-54 interaction domain C-terminal part signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00688
AL590842.1	EMBL	sequence_feature	3256348	3256395	.	-	.	ID=id6968;Note=PS00676 Sigma-54 interaction domain ATP-binding region B signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00676
AL590842.1	EMBL	sequence_feature	3256540	3256581	.	-	.	ID=id6969;Note=PS00675 Sigma-54 interaction domain ATP-binding region A signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00675
AL590842.1	EMBL	sequence_feature	3256708	3257007	.	-	.	ID=id6970;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 108.10%2C E-value 1.7e-28;gbkey=misc_feature;inference=protein motif:PF00072
AL590842.1	EMBL	gene	3257024	3258019	.	-	.	ID=gene2876;Name=YPO2915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2915
AL590842.1	EMBL	CDS	3257024	3258019	.	-	0	ID=cds2833;Parent=gene2876;Dbxref=InterPro:IPR025262,UniProtKB/TrEMBL:Q0WCZ2,NCBI_GP:CAL21524.1;Name=CAL21524.1;Note=No significant database matches to the full length CDS. Internal region similar to Escherichia coli hypothetical protein YfhG SW:YFHG_ECOLI (P37328) (237 aa) fasta scores: E(): 2.4e-22%2C 45.8%25 id in 216 aa. Possible alternative translational start sites;gbkey=CDS;product=putative lipoprotein;protein_id=CAL21524.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3257942	3257974	.	-	.	ID=id6971;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	3258095	3259546	.	-	.	ID=gene2877;Name=YPO2916;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2916
AL590842.1	EMBL	CDS	3258095	3259546	.	-	0	ID=cds2834;Parent=gene2877;Dbxref=GOA:Q7CJP8,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,UniProtKB/TrEMBL:Q7CJP8,NCBI_GP:CAL21525.1;Name=CAL21525.1;Note=Similar to Streptomyces coelicolor and Streptomyces lividans two-component sensor kinase involved in copper metabolism CutS SW:CUTS_STRCO (Q03757) (414 aa) fasta scores: E(): 3.9e-14%2C 30.0%25 id in 300 aa%2C and to Escherichia coli probable sensor protein YfhK SW:YFHK_ECOLI (P52101) (496 aa) fasta scores: E(): 0%2C 71.9%25 id in 474 aa. Probable two-component system histidine sensor kinase;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=two-component system sensor kinase;protein_id=CAL21525.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3258116	3258748	.	-	.	ID=id6972;Note=Pfam match to entry PF00512 signal%2C Histidine kinase%2C score 144.90%2C E-value 1.4e-39;gbkey=misc_feature;inference=protein motif:PF00512
AL590842.1	EMBL	sequence_feature	3258788	3259000	.	-	.	ID=id6973;Note=Pfam match to entry PF00672 DUF5%2C HAMP domain%2C score 42.20%2C E-value 1.2e-08;gbkey=misc_feature;inference=protein motif:PF00672
AL590842.1	EMBL	sequence_feature	3258932	3258997	.	-	.	ID=id6974;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3259421	3259486	.	-	.	ID=id6975;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	repeat_region	3259644	3260355	.	-	.	ID=id6976;Note=Contains a 'A' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	3259752	3260210	.	-	.	ID=gene2878;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO2917
AL590842.1	EMBL	CDS	3259752	3260210	.	-	0	ID=cds2835;Parent=gene2878;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL21526.1;Name=CAL21526.1;Note=Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL21526.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3259845	3260156	.	-	.	ID=id6977;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	3261437	3261997	.	+	.	ID=gene2879;Name=YPO2918;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2918
AL590842.1	EMBL	CDS	3261437	3261997	.	+	0	ID=cds2836;Parent=gene2879;Dbxref=UniProtKB/TrEMBL:Q7CJQ0,NCBI_GP:CAL21527.1;Name=CAL21527.1;Note=No significant database matches;gbkey=CDS;product=putative exported protein;protein_id=CAL21527.1;transl_table=11
AL590842.1	EMBL	gene	3262320	3262898	.	+	.	ID=gene2880;Name=YPO2919;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2919
AL590842.1	EMBL	CDS	3262320	3262898	.	+	0	ID=cds2837;Parent=gene2880;Dbxref=UniProtKB/TrEMBL:Q7CJQ1,NCBI_GP:CAL21528.1;Name=CAL21528.1;Note=no significant database hits%2C some similarity to an internal region of Bacillus subtilis hypothetical protein YdcQ TR:P96634 (EMBL:AB001488) (480 aa) fasta scores: E(): 7.3%2C 21.6%25 id in 185 aa;gbkey=CDS;inference=similar to sequence:INSDC:AB001488;product=hypothetical protein;protein_id=CAL21528.1;transl_table=11
AL590842.1	EMBL	gene	3263310	3267200	.	-	.	ID=gene2881;Name=purI;gbkey=Gene;gene=purI;gene_biotype=protein_coding;gene_synonym=purL;locus_tag=YPO2921
AL590842.1	EMBL	CDS	3263310	3267200	.	-	0	ID=cds2838;Parent=gene2881;Dbxref=GOA:Q8ZCQ2,InterPro:IPR000728,InterPro:IPR010073,InterPro:IPR010918,InterPro:IPR016188,InterPro:IPR017926,InterPro:IPR022940,InterPro:IPR029062,NCBI_GP:CAL21529.1;Name=CAL21529.1;Note=Similar to Escherichia coli phosphoribosylformylglycinamidine synthase PurL SW:PURL_ECOLI (P15254) (1295 aa) fasta scores: E(): 0%2C82.3%25 id in 1296 aa%2C and to Salmonella typhimurium phosphoribosylformylglycinamidine synthase PurL TR:P74881 (EMBL:U68728) (1295 aa) fasta scores: E(): 0%2C 82.6%25 id in 1296 aa;gbkey=CDS;gene=purI;inference=similar to sequence:INSDC:U68728;product=phosphoribosylformylglycinamidine synthase;protein_id=CAL21529.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3265458	3266495	.	-	.	ID=id6978;Note=Pfam match to entry PF00586 AIRS%2C AIR synthase related protein%2C score 226.70%2C E-value 3.4e-64;gbkey=misc_feature;gene=purI;inference=protein motif:PF00586
AL590842.1	EMBL	gene	3267516	3268976	.	+	.	ID=gene2882;Name=YPO2922;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2922
AL590842.1	EMBL	CDS	3267516	3268976	.	+	0	ID=cds2839;Parent=gene2882;Dbxref=GOA:Q74SQ6,InterPro:IPR000189,InterPro:IPR001638,InterPro:IPR008258,InterPro:IPR023346,InterPro:IPR023703,NCBI_GP:CAL21530.1;Name=CAL21530.1;Note=N-terminal region similar to Escherichia coli cystine-binding periplasmic protein FliY SW:FLIY_ECOLI (P39174) (266 aa) fasta scores: E(): 1.8e-08%2C 26.2%25 id in 271 aa. A larger portion of the CDS%2C including the C-terminal region%2C is similar to Escherichia coli hypothetical protein YfhD SW:YFHD_ECOLI (P30135) (472 aa) fasta scores: E(): 0%2C 61.4%25 id in 435 aa. The C-terminal region contains a transglycosylase SLT domain. Possible alternative translational start sites.;gbkey=CDS;product=putative membrane protein;protein_id=CAL21530.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3267525	3268310	.	+	.	ID=id6979;Note=Pfam match to entry PF00497 SBP_bac_3%2C Bacterial extracellular solute-binding proteins%2C family 3%2C score 31.60%2C E-value 4.7e-08;gbkey=misc_feature;inference=protein motif:PF00497
AL590842.1	EMBL	sequence_feature	3267531	3267599	.	+	.	ID=id6980;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3268383	3268733	.	+	.	ID=id6981;Note=Pfam match to entry PF01464 SLT%2C Transglycosylase SLT domain%2C score 135.60%2C E-value 9.2e-37;gbkey=misc_feature;inference=protein motif:PF01464
AL590842.1	EMBL	sequence_feature	3268440	3268526	.	+	.	ID=id6982;Note=PS00922 Prokaryotic transglycosylases signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00922
AL590842.1	EMBL	gene	3269085	3269564	.	-	.	ID=gene2883;Name=YPO2923;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2923
AL590842.1	EMBL	CDS	3269085	3269564	.	-	0	ID=cds2840;Parent=gene2883;Dbxref=GOA:Q0WCY5,InterPro:IPR002125,InterPro:IPR016192,InterPro:IPR016193,InterPro:IPR028883,UniProtKB/TrEMBL:Q0WCY5,NCBI_GP:CAL21531.1;Name=CAL21531.1;Note=Similar to Pseudomonas putida CumB TR:Q9X3V3 (EMBL:AF086638) (145 aa) fasta scores: E(): 7.3e-27%2C 52.8%25 id in 144 aa%2C and to Bradyrhizobium japonicum nitrogen fixation protein TR:Q45258 (EMBL:L34743) (142 aa) fasta scores: E(): 2e-21%2C 47.2%25 id in 142 aa%2C and to Escherichia coli hypothetical protein YfhC SW:YFHC_ECOLI (P30134) (178 aa) fasta scores: E(): 0%2C 71.1%25 id in 166 aa;gbkey=CDS;inference=similar to sequence:INSDC:L34743;product=putative zinc-binding protein;protein_id=CAL21531.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3269292	3269531	.	-	.	ID=id6983;Note=Pfam match to entry PF00383 dCMP_cyt_deam%2C Cytidine and deoxycytidylate deaminase zinc-binding region%2C score 113.10%2C E-value 5.4e-30;gbkey=misc_feature;inference=protein motif:PF00383
AL590842.1	EMBL	sequence_feature	3269316	3269429	.	-	.	ID=id6984;Note=PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00903
AL590842.1	EMBL	gene	3269758	3270405	.	-	.	ID=gene2884;Name=yfhB;gbkey=Gene;gene=yfhB;gene_biotype=protein_coding;locus_tag=YPO2924
AL590842.1	EMBL	CDS	3269758	3270405	.	-	0	ID=cds2841;Parent=gene2884;Dbxref=InterPro:IPR006435,InterPro:IPR023214,UniProtKB/TrEMBL:Q0WCY4,NCBI_GP:CAL21532.1;Name=CAL21532.1;Note=Similar to Escherichia coli hypothetical protein YfhB SW:YFHB_ECOLI (P30133) (211 aa) fasta scores: E(): 0%2C66.5%25 id in 206 aa%2C and to Caulobacter crescentus hypothetical protein CicA SW:CICA_CAUCR (O87707) (222 aa) fasta scores: E(): 0.0044%2C 24.1%25 id in 199 aa;gbkey=CDS;gene=yfhB;product=putative membrane protein;protein_id=CAL21532.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3270226	3270291	.	-	.	ID=id6985;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=yfhB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3270680	3271567	.	-	.	ID=gene2885;Name=YPO2925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2925
AL590842.1	EMBL	CDS	3270680	3271567	.	-	0	ID=cds2842;Parent=gene2885;Dbxref=GOA:Q8ZCP8,InterPro:IPR001347,InterPro:IPR005486,InterPro:IPR005488,InterPro:IPR009060,NCBI_GP:CAL21533.1;Name=CAL21533.1;Note=Similar to Escherichia coli hypothetical protein YfeU SW:YFEU_ECOLI (P76535) (298 aa) fasta scores: E(): 0%2C57.6%25 id in 295 aa%2C and to Vibrio cholerae glucokinase regulatory protein-related protein VC0690 TR:Q9KU39 (EMBL:AE004155) (307 aa) fasta scores: E(): 0%2C 63.3%25 id in 294 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004155;product=putative glucokinase protein;protein_id=CAL21533.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3270926	3271402	.	-	.	ID=id6986;Note=Pfam match to entry PF01380 SIS%2C SIS domain%2C score 50.70%2C E-value 3.2e-11;gbkey=misc_feature;inference=protein motif:PF01380
AL590842.1	EMBL	sequence_feature	3270962	3271015	.	-	.	ID=id6987;Note=PS01272 Glucokinase regulatory protein family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01272
AL590842.1	EMBL	gene	3271775	3272614	.	+	.	ID=gene2886;Name=YPO2926;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2926
AL590842.1	EMBL	CDS	3271775	3272614	.	+	0	ID=cds2843;Parent=gene2886;Dbxref=GOA:Q7CJQ2,InterPro:IPR000281,InterPro:IPR001347,InterPro:IPR009057,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CJQ2,NCBI_GP:CAL21534.1;Name=CAL21534.1;Note=Similar to Escherichia coli negative regulator of ribose phosphate isomerase B%2C RpiR SW:RPIR_ECOLI (P39266) (296 aa) fasta scores: E(): 1e-12%2C 21.8%25 id in 275 aa%2C and to Escherichia coli hypothetical protein YfhH SW:YFHH_ECOLI (P37767) (282 aa) fasta scores: E(): 0%2C 60.6%25 id in 282 aa;gbkey=CDS;product=putative RpiR-family transcriptional regulatory protein;protein_id=CAL21534.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3271775	3272095	.	+	.	ID=id6988;Note=Pfam match to entry PF01418 HTH_6%2C Helix-turn-helix domain%2C rpiR family%2C score 141.50%2C E-value 1.5e-38;gbkey=misc_feature;inference=protein motif:PF01418
AL590842.1	EMBL	sequence_feature	3271877	3271942	.	+	.	ID=id6989;Note=Predicted helix-turn-helix motif with score 1342 (+3.76 SD) at aa 35-56%2C sequence LSSQKLAQQTGVSQSAVVKFAQ;gbkey=misc_feature
AL590842.1	EMBL	sequence_feature	3272141	3272548	.	+	.	ID=id6990;Note=Pfam match to entry PF01380 SIS%2C SIS domain%2C score 92.00%2C E-value 1.2e-23;gbkey=misc_feature;inference=protein motif:PF01380
AL590842.1	EMBL	gene	3272776	3273036	.	+	.	ID=gene2887;Name=fdx;gbkey=Gene;gene=fdx;gene_biotype=protein_coding;locus_tag=YPO2927
AL590842.1	EMBL	CDS	3272776	3273036	.	+	0	ID=cds2844;Parent=gene2887;Dbxref=GOA:Q7CJQ3,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:Q7CJQ3,NCBI_GP:CAL21535.1;Name=CAL21535.1;Note=Similar to Chromatium vinosum 2[4Fe-4S] ferredoxin Fdx SW:FER_CHRVI (P00208) (82 aa) fasta scores: E(): 5.8e-17%2C 60.5%25 id in 76 aa%2C and to Escherichia coli putative ferredoxin-like protein YfhL SW:YFHL_ECOLI (P52102) (86 aa) fasta scores: E(): 9.7e-30%2C 79.1%25 id in 86 aa;gbkey=CDS;gene=fdx;product=putative [4Fe-4S] ferredoxin;protein_id=CAL21535.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3272779	3272850	.	+	.	ID=id6991;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 26.40%2C E-value 0.00021;gbkey=misc_feature;gene=fdx;inference=protein motif:PF00037
AL590842.1	EMBL	sequence_feature	3272800	3272835	.	+	.	ID=id6992;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;gene=fdx;inference=protein motif:ProSite:PS00198
AL590842.1	EMBL	repeat_region	3273084	3273795	.	-	.	ID=id6993;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	3273192	3273650	.	-	.	ID=gene2888;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO2928
AL590842.1	EMBL	CDS	3273192	3273650	.	-	0	ID=cds2845;Parent=gene2888;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL21536.1;Name=CAL21536.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL21536.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3273285	3273596	.	-	.	ID=id6994;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	3273852	3274232	.	-	.	ID=gene2889;Name=acpS;gbkey=Gene;gene=acpS;gene_biotype=protein_coding;gene_synonym=dpj;locus_tag=YPO2929
AL590842.1	EMBL	CDS	3273852	3274232	.	-	0	ID=cds2846;Parent=gene2889;Dbxref=GOA:Q8ZCP5,InterPro:IPR002582,InterPro:IPR004568,InterPro:IPR008278,NCBI_GP:CAL21537.1;Name=CAL21537.1;Note=Similar to Escherichia coli holo-[acyl-carrier protein] synthase AcpS SW:ACPS_ECOLI (P24224) (125 aa) fasta scores: E(): 0%2C 76.8%25 id in 125 aa%2C and to Vibrio cholerae holo-[acyl-carrier protein] synthase VC2457 TR:Q9KPB6 (EMBL:AE004316) (126 aa) fasta scores: E(): 2.4e-23%2C 54.5%25 id in 123 aa;gbkey=CDS;gene=acpS;inference=similar to sequence:INSDC:AE004316;product=holo-[acyl-carrier protein] synthase;protein_id=CAL21537.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3273870	3274220	.	-	.	ID=id6995;Note=Pfam match to entry PF01648 ACPS%2C4'-phosphopantetheinyl transferase superfamily%2C score 157.60%2C E-value 2.2e-43;gbkey=misc_feature;gene=acpS;inference=protein motif:PF01648
AL590842.1	EMBL	gene	3274232	3274963	.	-	.	ID=gene2890;Name=pdxJ;gbkey=Gene;gene=pdxJ;gene_biotype=protein_coding;locus_tag=YPO2930
AL590842.1	EMBL	CDS	3274232	3274963	.	-	0	ID=cds2847;Parent=gene2890;Dbxref=GOA:Q8ZCP4,InterPro:IPR004569,InterPro:IPR013785,PDB:3F4N,NCBI_GP:CAL21538.1;Name=CAL21538.1;Note=Similar to Escherichia coli pyridoxal phosphate biosynthetic protein PdxJ SW:PDXJ_ECOLI (P24223) (242 aa) fasta scores: E(): 0%2C 81.3%25 id in 241 aa%2C and to Vibrio cholerae pyridoxal phosphate biosynthetic protein PdxJ TR:Q9KPB5 (EMBL:AE004316) (243 aa) fasta scores: E(): 0%2C69.5%25 id in 243 aa;gbkey=CDS;gene=pdxJ;inference=similar to sequence:INSDC:AE004316;product=pyridoxal phosphate biosynthetic protein PdxJ;protein_id=CAL21538.1;transl_table=11
AL590842.1	EMBL	repeat_region	3275087	3277040	.	-	.	ID=id6996;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	3275087	3275114	.	+	.	ID=id6997;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	3275153	3275935	.	-	.	ID=gene2891;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO2931
AL590842.1	EMBL	CDS	3275153	3275935	.	-	0	ID=cds2848;Parent=gene2891;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL21539.1;Name=CAL21539.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL21539.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3275228	3275767	.	-	.	ID=id6998;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	3275585	3275608	.	-	.	ID=id6999;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3275932	3276954	.	-	.	ID=gene2892;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO2932
AL590842.1	EMBL	CDS	3275932	3276954	.	-	0	ID=cds2849;Parent=gene2892;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL21540.1;Name=CAL21540.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL21540.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3276076	3276609	.	-	.	ID=id7000;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	sequence_feature	3276838	3276903	.	-	.	ID=id7001;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	3276847	3276930	.	-	.	ID=id7002;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	INVERTED	3277013	3277040	.	-	.	ID=id7003;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	pseudogene	3277040	3277600	.	-	.	ID=gene2893;Name=YPO2933;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO2933;pseudo=true
AL590842.1	EMBL	CDS	3277040	3277600	.	-	0	ID=cds2850;Parent=gene2893;Note=No significant database matches to the full length CDS. N-terminal region similar to the N-terminus of Escherichia coli O157:H7 putative transcriptional regulator YggD TR:AAG58060 (EMBL:AE005523) (169 aa) fasta scores: E(): 0.92%2C 31.5%25 id in 149 aa. CDS translational stop lies within the downstream IS100 element. Therefore CDS is probably disrupted by the insertion (at the C-terminal end) of the IS100 element. It is not clear whether this insertion affects the function of the protein.;gbkey=CDS;inference=similar to sequence:INSDC:AE005523;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	3277633	3278982	.	-	.	ID=gene2894;Name=YPO2934;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2934
AL590842.1	EMBL	CDS	3277633	3278982	.	-	0	ID=cds2851;Parent=gene2894;Dbxref=InterPro:IPR010263,UniProtKB/TrEMBL:Q7CJC9,NCBI_GP:CAL21542.1;Name=CAL21542.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA0079 TR:AAG03469 (EMBL:AE004447) (444 aa) fasta scores: E(): 0%2C 36.7%25 id in 444 aa%2C and to Vibrio cholerae hypothetical protein VCA0114 TR:Q9KN51 (EMBL:AE004353) (444 aa) fasta scores: E(): 0%2C 32.8%25 id in 445 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004447;product=conserved hypothetical protein;protein_id=CAL21542.1;transl_table=11
AL590842.1	EMBL	gene	3278986	3279546	.	-	.	ID=gene2895;Name=YPO2935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2935
AL590842.1	EMBL	CDS	3278986	3279546	.	-	0	ID=cds2852;Parent=gene2895;Dbxref=InterPro:IPR017734,UniProtKB/TrEMBL:Q0WCX4,NCBI_GP:CAL21543.1;Name=CAL21543.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA0080 TR:AAG03470 (EMBL:AE004447) (154 aa) fasta scores: E(): 8.9e-11%2C 33.1%25 id in 133 aa%2C and to Vibrio cholerae hypothetical protein VCA0113 TR:Q9KN52 (EMBL:AE004353) (158 aa) fasta scores: E(): 1.5e-07%2C 28.5%25 id in 137 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004447;product=putative exported protein;protein_id=CAL21543.1;transl_table=11
AL590842.1	EMBL	gene	3279799	3280284	.	-	.	ID=gene2896;Name=YPO2937;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2937
AL590842.1	EMBL	CDS	3279799	3280284	.	-	0	ID=cds2853;Parent=gene2896;Dbxref=InterPro:IPR008514,UniProtKB/TrEMBL:Q0WCX3,NCBI_GP:CAL21544.1;Name=CAL21544.1;Note=Similar to Edwardsiella ictaluri putative hypothetical protein Eip18 TR:O52405 (EMBL:AF037441) (163 aa) fasta scores: E(): 2.5e-14%2C 35.1%25 id in 148 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF037441;product=conserved hypothetical protein;protein_id=CAL21544.1;transl_table=11
AL590842.1	EMBL	gene	3280610	3282112	.	-	.	ID=gene2897;Name=YPO2938;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2938
AL590842.1	EMBL	CDS	3280610	3282112	.	-	0	ID=cds2854;Parent=gene2897;Dbxref=InterPro:IPR010269,UniProtKB/TrEMBL:Q0WCX2,NCBI_GP:CAL21545.1;Name=CAL21545.1;Note=Similar to Edwardsiella ictaluri putative hypothetical protein Eip55 TR:O52406 (EMBL:AF037441) (495 aa) fasta scores: E(): 0%2C 49.9%25 id in 495 aa%2C and to Vibrio cholerae hypothetical protein VCA0108 TR:Q9KN57 (EMBL:AE004353) (492 aa) fasta scores: E(): 0%2C 39.6%25 id in 498 aa. Similar to YPO0501 (61.4%25 identity in 479 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AF037441;product=conserved hypothetical protein;protein_id=CAL21545.1;transl_table=11
AL590842.1	EMBL	gene	3282136	3282660	.	-	.	ID=gene2898;Name=YPO2939;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2939
AL590842.1	EMBL	CDS	3282136	3282660	.	-	0	ID=cds2855;Parent=gene2898;Dbxref=InterPro:IPR008312,UniProtKB/TrEMBL:Q0WCX1,NCBI_GP:CAL21546.1;Name=CAL21546.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA0083 TR:AAG03473 (EMBL:AE004447) (172 aa) fasta scores: E(): 0%2C 73.6%25 id in 174 aa%2C and to Edwardsiella ictaluri hypothetical protein Eip20 TR:O52407 (EMBL:AF037441) (170 aa) fasta scores: E(): 5e-21%2C 42.5%25 id in 160 aa. Similar to YPO0500 (59.3%25 identity in 162 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AF037441;product=conserved hypothetical protein;protein_id=CAL21546.1;transl_table=11
AL590842.1	EMBL	gene	3282765	3283319	.	-	.	ID=gene2899;Name=YPO2940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2940
AL590842.1	EMBL	CDS	3282765	3283319	.	-	0	ID=cds2856;Parent=gene2899;Dbxref=GOA:Q0WCX0,InterPro:IPR000259,InterPro:IPR008966,UniProtKB/TrEMBL:Q0WCX0,NCBI_GP:CAL21547.1;Name=CAL21547.1;Note=Similar to Escherichia coli major fimbrial subunit precursor F17B-A TR:Q47201 (EMBL:L14318) (180 aa) fasta scores: E(): 8.9e-08%2C 32.8%25 id in 174 aa%2C and to Proteus mirabilis uroepithelial cell adherence protein Uca TR:Q51889 (EMBL:U28420) (180 aa) fasta scores: E(): 2.2e-07%2C 32.7%25 id in 162 aa;gbkey=CDS;inference=similar to sequence:INSDC:U28420;product=fimbrial protein;protein_id=CAL21547.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3282768	3283238	.	-	.	ID=id7004;Note=Pfam match to entry PF00419 Fimbrial%2C Fimbrial proteins%2C score 54.60%2C E-value 2.2e-12;gbkey=misc_feature;inference=protein motif:PF00419
AL590842.1	EMBL	pseudogene	3285818	3287278	.	-	.	ID=gene2900;Name=YPO2943;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO2943;part=1/2;pseudo=true
AL590842.1	EMBL	pseudogene	3283361	3284500	.	-	.	ID=gene2900;Name=YPO2943;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO2943;part=2/2;pseudo=true
AL590842.1	EMBL	CDS	3285818	3287278	.	-	0	ID=cds2857;Parent=gene2900;Note=Similar to Escherichia coli outer membrane usher protein HtrE SW:HTRE_ECOLI (P33129) (865 aa) fasta scores: E(): 0%2C 34.6%25 id in 856 aa%2C and to Yersinia pestis putative outer membrane usher protein TR:Q9ZC30 (EMBL:AL031866) (863 aa) fasta scores: E(): 0%2C 29.5%25 id in 881 aa. CDS disrupted by the insertion of an IS285 element at codon 512.;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=outer membrane usher protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	CDS	3283361	3284500	.	-	0	ID=cds2857;Parent=gene2900;Note=Similar to Escherichia coli outer membrane usher protein HtrE SW:HTRE_ECOLI (P33129) (865 aa) fasta scores: E(): 0%2C 34.6%25 id in 856 aa%2C and to Yersinia pestis putative outer membrane usher protein TR:Q9ZC30 (EMBL:AL031866) (863 aa) fasta scores: E(): 0%2C 29.5%25 id in 881 aa. CDS disrupted by the insertion of an IS285 element at codon 512.;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=outer membrane usher protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	3283421	3284461	.	-	.	ID=id7005;Note=Pfam match to entry PF00577 Usher%2C Fimbrial Usher proteins%2C score 260.80%2C E-value 1.8e-74;gbkey=misc_feature;inference=protein motif:PF00577
AL590842.1	EMBL	sequence_feature	3285827	3287173	.	-	.	ID=id7006;Note=Pfam match to entry PF00577 Usher%2C Fimbrial Usher proteins%2C score 528.40%2C E-value 5.1e-155;gbkey=misc_feature;inference=protein motif:PF00577
AL590842.1	EMBL	repeat_region	3284502	3285816	.	+	.	ID=id7007;Note=insertion sequence:IS285;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	3284502	3284530	.	+	.	ID=id7008;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	3284573	3285781	.	+	.	ID=gene2901;Name=y1062;gbkey=Gene;gene=y1062;gene_biotype=protein_coding;gene_synonym=ypmt1.80C;locus_tag=YPO2942
AL590842.1	EMBL	CDS	3284573	3285781	.	+	0	ID=cds2858;Parent=gene2901;Dbxref=GOA:O68779,InterPro:IPR001207,UniProtKB/TrEMBL:O68779,NCBI_GP:CAL21549.1;Name=CAL21549.1;Note=Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa.;gbkey=CDS;gene=y1062;inference=similar to sequence:INSDC:AF053947;product=transposase for the IS285 insertion element;protein_id=CAL21549.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3284573	3285709	.	+	.	ID=id7009;Note=Pfam match to entry PF00872 Transpo_mutator%2CTransposase%2C Mutator family%2C score 430.40%2C E-value 1.6e-125;gbkey=misc_feature;gene=y1062;inference=protein motif:PF00872
AL590842.1	EMBL	sequence_feature	3285266	3285340	.	+	.	ID=id7010;Note=PS01007 Transposases%2C Mutator family%2C signature.;gbkey=misc_feature;gene=y1062;inference=protein motif:ProSite:PS01007
AL590842.1	EMBL	INVERTED	3285788	3285816	.	-	.	ID=id7011;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	3287481	3288260	.	-	.	ID=gene2902;Name=YPO2944;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2944
AL590842.1	EMBL	CDS	3287481	3288260	.	-	0	ID=cds2859;Parent=gene2902;Dbxref=GOA:Q7CJD1,InterPro:IPR001829,InterPro:IPR008962,InterPro:IPR016147,InterPro:IPR016148,InterPro:IPR018046,UniProtKB/TrEMBL:Q7CJD1,NCBI_GP:CAL21550.1;Name=CAL21550.1;Note=Similar to Escherichia coli chaperone protein EcpD SW:ECPD_ECOLI (P33128) (246 aa) fasta scores: E(): 0%2C 40.2%25 id in 246 aa%2C and to Pseudomonas aeruginosa probable pili asembly chaperone PA4085 TR:AAG07472 (EMBL:AE004825) (248 aa) fasta scores: E(): 6.4e-30%2C 38.6%25 id in 220 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004825;product=putative pili chaperone protein;protein_id=CAL21550.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3287547	3288161	.	-	.	ID=id7012;Note=Pfam match to entry PF00345 pili_assembly%2CGram-negative pili assembly chaperone%2C score 234.30%2CE-value 3.5e-68;gbkey=misc_feature;inference=protein motif:PF00345
AL590842.1	EMBL	sequence_feature	3287895	3287948	.	-	.	ID=id7013;Note=PS00635 Gram-negative pili assembly chaperone signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00635
AL590842.1	EMBL	gene	3288399	3288944	.	-	.	ID=gene2903;Name=YPO2945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2945
AL590842.1	EMBL	CDS	3288399	3288944	.	-	0	ID=cds2860;Parent=gene2903;Dbxref=GOA:Q306M1,InterPro:IPR000259,InterPro:IPR008966,UniProtKB/TrEMBL:Q306M1,NCBI_GP:CAL21551.1;Name=CAL21551.1;Note=Similar to Proteus mirabilis uroepithelial cell adherence protein Uca TR:Q51889 (EMBL:U28420) (180 aa) fasta scores: E(): 1.1e-13%2C 36.7%25 id in 177 aa%2C and to Escherichia coli F17A fimbrial subunit protein TR:Q9RH95 (EMBL:AF055307) (180 aa) fasta scores: E(): 1.1e-13%2C 38.4%25 id in 172 aa;gbkey=CDS;inference=similar to sequence:INSDC:U28420;product=frimbrial protein;protein_id=CAL21551.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3288402	3288869	.	-	.	ID=id7014;Note=Pfam match to entry PF00419 Fimbrial%2C Fimbrial proteins%2C score 71.30%2C E-value 2e-17;gbkey=misc_feature;inference=protein motif:PF00419
AL590842.1	EMBL	gene	3289145	3291820	.	-	.	ID=gene2904;Name=clpB5;gbkey=Gene;gene=clpB5;gene_biotype=protein_coding;locus_tag=YPO2946
AL590842.1	EMBL	CDS	3289145	3291820	.	-	0	ID=cds2861;Parent=gene2904;Dbxref=GOA:Q0WCW6,InterPro:IPR001270,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR004176,InterPro:IPR017729,InterPro:IPR018368,InterPro:IPR019489,InterPro:IPR023150,InterPro:IPR027417,InterPro:IPR028299,UniProtKB/TrEMBL:Q0WCW6,NCBI_GP:CAL21552.1;Name=CAL21552.1;Note=Similar to Escherichia coli ClpB protein%2C which is thought to form part of a multi-chaperone system supressing protein aggregation%2C SW:CLPB_ECOLI (P03815) (857 aa) fasta scores: E(): 0%2C 37.4%25 identity in 866 aa overlap and to Yersinia enterocolitica Clp protease-associated protein ClpB TR:AAG00524 (EMBL:AF285784) (890 aa) fasta scores: E(): 0%2C 87.7%25 id in 884 aa. Also significantly similar to the products of the Y. pestis CDS: YPO0506%2C YPO0971%2CYPO1471%2C YPO3275 and YPO3599.;gbkey=CDS;gene=clpB5;inference=similar to sequence:INSDC:AF285784;product=Clp ATPase;protein_id=CAL21552.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3289919	3289942	.	-	.	ID=id7015;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=clpB5;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3290606	3291130	.	-	.	ID=id7016;Note=Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA)%2C score 35.10%2CE-value 1.6e-06;gbkey=misc_feature;gene=clpB5;inference=protein motif:PF00004
AL590842.1	EMBL	sequence_feature	3290813	3290851	.	-	.	ID=id7017;Note=PS00870 Chaperonins clpA/B signature 1.;gbkey=misc_feature;gene=clpB5;inference=protein motif:ProSite:PS00870
AL590842.1	EMBL	sequence_feature	3291092	3291115	.	-	.	ID=id7018;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=clpB5;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3292603	3294483	.	+	.	ID=gene2905;Name=YPO2947;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2947
AL590842.1	EMBL	CDS	3292603	3294483	.	+	0	ID=cds2862;Parent=gene2905;Dbxref=InterPro:IPR010272,UniProtKB/TrEMBL:Q7CJD2,NCBI_GP:CAL21553.1;Name=CAL21553.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA0088 TR:AAG03478 (EMBL:AE004447) (619 aa) fasta scores: E(): 0%2C 41.5%25 id in 627 aa%2C and to Vibrio cholerae hypothetical protein VCA0110 TR:Q9KN55 (EMBL:AE004353) (589 aa) fasta scores: E(): 3e-14%2C 29.0%25 id in 625 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004447;product=conserved hypothetical protein;protein_id=CAL21553.1;transl_table=11
AL590842.1	EMBL	gene	3294483	3295508	.	+	.	ID=gene2906;Name=YPO2948;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2948
AL590842.1	EMBL	CDS	3294483	3295508	.	+	0	ID=cds2863;Parent=gene2906;Dbxref=InterPro:IPR010732,UniProtKB/TrEMBL:Q74SM4,NCBI_GP:CAL21554.1;Name=CAL21554.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA0089 TR:AAG03479 (EMBL:AE004447) (348 aa) fasta scores: E(): 0%2C 38.1%25 id in 302 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA2370 TR:AAG05758 (EMBL:AE004663) (338 aa) fasta scores: E(): 3.2e-14%2C 27.7%25 id in 289 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004663;product=conserved hypothetical protein;protein_id=CAL21554.1;transl_table=11
AL590842.1	EMBL	gene	3295607	3296788	.	+	.	ID=gene2907;Name=YPO2949;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2949
AL590842.1	EMBL	CDS	3295607	3296788	.	+	0	ID=cds2864;Parent=gene2907;Dbxref=InterPro:IPR010657,UniProtKB/TrEMBL:Q74SM3,NCBI_GP:CAL21555.1;Name=CAL21555.1;Note=no significant database hits to the full length CDS. Similar to Pseudomonas aeruginosa hypothetical protein PA0082 TR:AAG03472 (EMBL:AE004447) (344 aa) fasta scores: E(): 4e-06%2C 23.2%25 id in 384 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004447;product=hypothetical protein;protein_id=CAL21555.1;transl_table=11
AL590842.1	EMBL	gene	3296795	3297826	.	+	.	ID=gene2908;Name=YPO2950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2950
AL590842.1	EMBL	CDS	3296795	3297826	.	+	0	ID=cds2865;Parent=gene2908;Dbxref=GOA:Q7CJD3,InterPro:IPR000259,InterPro:IPR008966,UniProtKB/TrEMBL:Q7CJD3,NCBI_GP:CAL21556.1;Name=CAL21556.1;Note=Similar to Escherichia coli K99 fibrillae protein FanF SW:FANF_ECOLI (P25448) (333 aa) fasta scores: E(): 0.15%2C 24.2%25 id in 297 aa. N-terminal region similar to Escherichia coli F16 P-fimbriae major subunit protein FsiA TR:P71221 (EMBL:Y08930) (167 aa) fasta scores: E(): 0.012%2C27.9%25 id in 147 aa;gbkey=CDS;inference=similar to sequence:INSDC:Y08930;product=putative fimbrial protein;protein_id=CAL21556.1;transl_table=11
AL590842.1	EMBL	gene	3297866	3299203	.	+	.	ID=gene2909;Name=YPO2951;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2951
AL590842.1	EMBL	CDS	3297866	3299203	.	+	0	ID=cds2866;Parent=gene2909;Dbxref=InterPro:IPR021067,InterPro:IPR029044,UniProtKB/TrEMBL:Q7CJD4,NCBI_GP:CAL21557.1;Name=CAL21557.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21557.1;transl_table=11
AL590842.1	EMBL	gene	3299200	3299883	.	+	.	ID=gene2910;Name=YPO2952;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2952
AL590842.1	EMBL	CDS	3299200	3299883	.	+	0	ID=cds2867;Parent=gene2910;Dbxref=UniProtKB/TrEMBL:Q0WCW0,NCBI_GP:CAL21558.1;Name=CAL21558.1;Note=Poor database matches. Some similarity to an internal region of Caenorhabditis elegans hydroxymethylglutaryl-CoA synthase SW:HMCS_CAEEL (P54871) (458 aa) fasta scores: E(): 6%2C 25.4%25 id in 193 aa;gbkey=CDS;product=putative membrane protein;protein_id=CAL21558.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3299800	3299853	.	+	.	ID=id7019;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3299884	3301566	.	+	.	ID=gene2911;Name=YPO2953;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2953
AL590842.1	EMBL	CDS	3299884	3301566	.	+	0	ID=cds2868;Parent=gene2911;Dbxref=GOA:Q7CJD5,InterPro:IPR006664,InterPro:IPR006665,UniProtKB/TrEMBL:Q7CJD5,NCBI_GP:CAL21559.1;Name=CAL21559.1;Note=No significant database matches to the full length CDS. C-terminus similar to C-terminal region of Pseudomonas aeruginosa probable outer membrane protein PA3692 TR:AAG07080 (EMBL:AE004788) (261 aa) fasta scores: E(): 6.7e-09%2C 35.6%25 id in 135 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004788;product=putative membrane protein;protein_id=CAL21559.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3299911	3299964	.	+	.	ID=id7020;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3299977	3300045	.	+	.	ID=id7021;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3301204	3301500	.	+	.	ID=id7022;Note=Pfam match to entry PF00691 OmpA%2C OmpA family%2C score 78.10%2C E-value 1.8e-19;gbkey=misc_feature;inference=protein motif:PF00691
AL590842.1	EMBL	gene	3301563	3302045	.	+	.	ID=gene2912;Name=YPO2954;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2954
AL590842.1	EMBL	CDS	3301563	3302045	.	+	0	ID=cds2869;Parent=gene2912;Dbxref=InterPro:IPR014894,InterPro:IPR016123,UniProtKB/TrEMBL:Q7CJD6,NCBI_GP:CAL21560.1;Name=CAL21560.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21560.1;transl_table=11
AL590842.1	EMBL	gene	3302403	3303005	.	-	.	ID=gene2913;Name=YPO2955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2955
AL590842.1	EMBL	CDS	3302403	3303005	.	-	0	ID=cds2870;Parent=gene2913;Dbxref=GOA:Q7CJD7,InterPro:IPR000792,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:Q7CJD7,NCBI_GP:CAL21561.1;Name=CAL21561.1;Note=Similar to Klebsiella aerogenes colanic acid capsular biosynthesis activation protein A RcsA SW:RCSA_KLEAE (P05338) (207 aa) fasta scores: E(): 0.15%2C21.4%25 id in 201 aa%2C and to Vibrio fischeri bioluminescence operon transcriptional activator protein LuxR SW:LUXR_VIBFI (P12746) (250 aa) fasta scores: E(): 0.24%2C 25.5%25 id in 208 aa;gbkey=CDS;product=putative luxR-family regulatory protein;protein_id=CAL21561.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3302430	3302627	.	-	.	ID=id7023;Note=Pfam match to entry PF00196 GerE%2C Bacterial regulatory proteins%2C luxR family%2C score 37.70%2C E-value 2.6e-07;gbkey=misc_feature;inference=protein motif:PF00196
AL590842.1	EMBL	sequence_feature	3302493	3302576	.	-	.	ID=id7024;Note=PS00622 Bacterial regulatory proteins%2C luxR family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00622
AL590842.1	EMBL	gene	3304260	3305372	.	-	.	ID=gene2914;Name=mltB;gbkey=Gene;gene=mltB;gene_biotype=protein_coding;locus_tag=YPO2957
AL590842.1	EMBL	CDS	3304260	3305372	.	-	0	ID=cds2871;Parent=gene2914;Dbxref=GOA:Q7CJD8,InterPro:IPR011757,InterPro:IPR023346,UniProtKB/TrEMBL:Q7CJD8,NCBI_GP:CAL21562.1;Name=CAL21562.1;Note=Similar to Escherichia coli membrane-bound lytic murein transglycosylase B MltB SW:MLTB_ECOLI (P41052) (361 aa) fasta scores: E(): 0%2C 74.2%25 id in 360 aa%2C and to Pseudomonas aeruginosa membrane-bound lytic transglycosylase MltB1 TR:AAG07832 (EMBL:AE004859) (367 aa) fasta scores: E(): 0%2C 69.2%25 id in 370 aa;gbkey=CDS;gene=mltB;inference=similar to sequence:INSDC:AE004859;product=putative membrane-bound lytic murein transglycosylase B;protein_id=CAL21562.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3305304	3305336	.	-	.	ID=id7025;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=mltB;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	3305683	3306702	.	+	.	ID=gene2915;Name=sfuA;gbkey=Gene;gene=sfuA;gene_biotype=protein_coding;gene_synonym=yfuA;locus_tag=YPO2958
AL590842.1	EMBL	CDS	3305683	3306702	.	+	0	ID=cds2872;Parent=gene2915;Dbxref=GOA:Q7CJD9,InterPro:IPR006061,InterPro:IPR026045,UniProtKB/TrEMBL:Q7CJD9,NCBI_GP:CAL21563.1;Name=CAL21563.1;Note=Similar to Serratia marcescens iron(III)-binding periplasmic protein SfuA SW:SFUA_SERMA (P21408) (338 aa) fasta scores: E(): 0%2C 80.8%25 id in 339 aa%2C and to Yersinia enterocolitica probable iron transport system protei YfuA TR:Q56925 (EMBL:Z47200) (338 aa) fasta scores: E(): 0%2C83.5%25 id in 339 aa;gbkey=CDS;gene=sfuA;inference=similar to sequence:INSDC:Z47200;product=iron(III)-binding periplasmic protein;protein_id=CAL21563.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3306058	3306111	.	+	.	ID=id7026;Note=PS01037 Bacterial extracellular solute-binding proteins%2C family 1 signature.;gbkey=misc_feature;gene=sfuA;inference=protein motif:ProSite:PS01037
AL590842.1	EMBL	sequence_feature	3306418	3306657	.	+	.	ID=id7027;Note=Pfam match to entry PF01547 SBP_bacterial_1%2CBacterial extracellular solute-binding protein%2C score 20.80%2C E-value 7.9e-05;gbkey=misc_feature;gene=sfuA;inference=protein motif:PF01547
AL590842.1	EMBL	gene	3306758	3308344	.	+	.	ID=gene2916;Name=sfuB;gbkey=Gene;gene=sfuB;gene_biotype=protein_coding;gene_synonym=yfuB;locus_tag=YPO2959
AL590842.1	EMBL	CDS	3306758	3308344	.	+	0	ID=cds2873;Parent=gene2916;Dbxref=GOA:Q0WCV4,InterPro:IPR000515,UniProtKB/TrEMBL:Q0WCV4,NCBI_GP:CAL21564.1;Name=CAL21564.1;Note=Similar to Serratia marcescens iron(III)-transport system permease SfuB SW:SFUB_SERMA (P21409) (527 aa) fasta scores: E(): 0%2C 78.8%25 id in 533 aa%2C and to Yersinia enterocolitica iron transport system protein YfuB TR:Q56926 (EMBL:Z47200) (528 aa) fasta scores: E(): 0%2C 87.1%25 id in 528 aa;gbkey=CDS;gene=sfuB;inference=similar to sequence:INSDC:Z47200;product=iron(III)-transport system permease;protein_id=CAL21564.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3306842	3306910	.	+	.	ID=id7028;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=sfuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3306968	3307036	.	+	.	ID=id7029;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=sfuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3307073	3307141	.	+	.	ID=id7030;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=sfuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3307169	3307237	.	+	.	ID=id7031;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=sfuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3307232	3307456	.	+	.	ID=id7032;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 27.50%2C E-value 0.0003;gbkey=misc_feature;gene=sfuB;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	3307331	3307399	.	+	.	ID=id7033;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=sfuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3307457	3307525	.	+	.	ID=id7034;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=sfuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3307604	3307672	.	+	.	ID=id7035;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=sfuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3307751	3307819	.	+	.	ID=id7036;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=sfuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3307853	3307921	.	+	.	ID=id7037;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=sfuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3307934	3308002	.	+	.	ID=id7038;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=sfuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3308015	3308236	.	+	.	ID=id7039;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 53.60%2C E-value 4.4e-12;gbkey=misc_feature;gene=sfuB;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	3308120	3308188	.	+	.	ID=id7040;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=sfuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3308246	3308314	.	+	.	ID=id7041;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=sfuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3308341	3309390	.	+	.	ID=gene2917;Name=sfuC;gbkey=Gene;gene=sfuC;gene_biotype=protein_coding;gene_synonym=yfuC;locus_tag=YPO2960
AL590842.1	EMBL	CDS	3308341	3309390	.	+	0	ID=cds2874;Parent=gene2917;Dbxref=GOA:Q8ZCM2,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR008995,InterPro:IPR015853,InterPro:IPR017871,InterPro:IPR027417,NCBI_GP:CAL21565.1;Name=CAL21565.1;Note=Similar to Serratia marcescens iron(III)-transport ATP-binding protein SfuC SW:SFUC_SERMA (P21410) (345 aa) fasta scores: E(): 0%2C 72.1%25 id in 348 aa%2C and to Yersinia enterocolitica iron transport system protein YfuC TR:Q56927 (EMBL:Z47200) (349 aa) fasta scores: E(): 0%2C 77.1%25 id in 349 aa;gbkey=CDS;gene=sfuC;inference=similar to sequence:INSDC:Z47200;product=iron(III)-transport ATP-binding protein;protein_id=CAL21565.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3308425	3308976	.	+	.	ID=id7042;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 209.90%2C E-value 3.9e-59;gbkey=misc_feature;gene=sfuC;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	3308446	3308469	.	+	.	ID=id7043;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=sfuC;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3308746	3308790	.	+	.	ID=id7044;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=sfuC;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	3309463	3309987	.	-	.	ID=gene2918;Name=YPO2961;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2961
AL590842.1	EMBL	CDS	3309463	3309987	.	-	0	ID=cds2875;Parent=gene2918;Dbxref=InterPro:IPR014591,InterPro:IPR021125,UniProtKB/TrEMBL:Q7CJE1,NCBI_GP:CAL21566.1;Name=CAL21566.1;Note=Similar to Lactococcus lactis hypothetical protein TcsEorf2 TR:Q9JN51 (EMBL:U81488) (171 aa) fasta scores: E(): 1.4e-12%2C 31.7%25 id in 167 aa%2C and to Vibrio cholerae hypothetical protein VC1575 TR:Q9KRR1 (EMBL:AE004235) (152 aa) fasta scores: E(): 0.17%2C 23.0%25 id in 148 aa;gbkey=CDS;inference=similar to sequence:INSDC:U81488;product=putative membrane protein;protein_id=CAL21566.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3309511	3309576	.	-	.	ID=id7045;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3309589	3309645	.	-	.	ID=id7046;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3309667	3309732	.	-	.	ID=id7047;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3309859	3309924	.	-	.	ID=id7048;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3310448	3310933	.	+	.	ID=gene2919;Name=YPO2962;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2962
AL590842.1	EMBL	CDS	3310448	3310933	.	+	0	ID=cds2876;Parent=gene2919;Dbxref=InterPro:IPR008514,UniProtKB/TrEMBL:Q7CJE2,NCBI_GP:CAL21567.1;Name=CAL21567.1;Note=Similar to Escherichia coli hypothetical protein YhhZ SW:YHHZ_ECOLI (P46855) (392 aa) fasta scores: E(): 1.9e-16%2C 43.6%25 id in 149 aa%2C and to Pseudomonas aeruginosa secreted protein HcpB TR:AAG04901 (EMBL:AE004939) (172 aa) fasta scores: E(): 0.0041%2C 37.1%25 id in 167 aa. Similar to YPO2793 (64.8%25 identity in 159 aa overlap)%2C YPO2868 (59.1%25 identity in 159 aa overlap) and YPO1872 (60.5%25 identity in 114 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AE004939;product=conserved hypothetical protein;protein_id=CAL21567.1;transl_table=11
AL590842.1	EMBL	gene	3311163	3312011	.	-	.	ID=gene2920;Name=YPO2963;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2963
AL590842.1	EMBL	CDS	3311163	3312011	.	-	0	ID=cds2877;Parent=gene2920;Dbxref=InterPro:IPR025320,UniProtKB/TrEMBL:Q7CJE3,NCBI_GP:CAL21568.1;Name=CAL21568.1;Note=No significant database matches to the full length CDS. Similar to an internal region of Acidianus ambivalens signal recognition particle receptor Sra TR:Q46492 (EMBL:X95989) (374 aa) fasta scores: E(): 5.4%2C 21.2%25 id in 297 aa;gbkey=CDS;inference=similar to sequence:INSDC:X95989;product=hypothetical protein;protein_id=CAL21568.1;transl_table=11
AL590842.1	EMBL	gene	3312842	3315268	.	+	.	ID=gene2921;Name=dmsA;gbkey=Gene;gene=dmsA;gene_biotype=protein_coding;locus_tag=YPO2965
AL590842.1	EMBL	CDS	3312842	3315268	.	+	0	ID=cds2878;Parent=gene2921;Dbxref=GOA:Q0WCU9,InterPro:IPR006311,InterPro:IPR006655,InterPro:IPR006656,InterPro:IPR006657,InterPro:IPR006963,InterPro:IPR009010,InterPro:IPR011888,InterPro:IPR019546,InterPro:IPR027467,UniProtKB/TrEMBL:Q0WCU9,NCBI_GP:CAL21569.1;Name=CAL21569.1;Note=Similar to Escherichia coli anaerobic dimethyl sulfoxide reductase chain A protein DmsA SW:DMSA_ECOLI (P18775) (785 aa) fasta scores: E(): 0%2C 51.6%25 id in 812 aa%2Cand to Escherichia coli putative oxidoreductase%2C major subunit protein YnfE SW:YNFE_ECOLI (P77374) (808 aa) fasta scores: E(): 0%2C 52.0%25 id in 816 aa. Similar to YPO3325 (50.5%25 identity in 823 aa overlap);gbkey=CDS;gene=dmsA;product=putative dimethyl sulfoxide reductase chain A protein;protein_id=CAL21569.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3313016	3313072	.	+	.	ID=id7049;Note=PS00551 Prokaryotic molybdopterin oxidoreductases signature 1.;gbkey=misc_feature;gene=dmsA;inference=protein motif:ProSite:PS00551
AL590842.1	EMBL	sequence_feature	3314336	3314539	.	+	.	ID=id7050;Note=Pfam match to entry PF00384 molybdopterin%2CProkaryotic molybdopterin oxidoreductases%2C score 66.30%2CE-value 1.6e-20;gbkey=misc_feature;gene=dmsA;inference=protein motif:PF00384
AL590842.1	EMBL	sequence_feature	3314906	3315247	.	+	.	ID=id7051;Note=Pfam match to entry PF01568 Molydop_binding%2CMolydopterin dinucleotide binding domain%2C score 136.90%2CE-value 3.6e-37;gbkey=misc_feature;gene=dmsA;inference=protein motif:PF01568
AL590842.1	EMBL	gene	3315280	3315897	.	+	.	ID=gene2922;Name=dmsB;gbkey=Gene;gene=dmsB;gene_biotype=protein_coding;locus_tag=YPO2966
AL590842.1	EMBL	CDS	3315280	3315897	.	+	0	ID=cds2879;Parent=gene2922;Dbxref=GOA:Q7CJE4,InterPro:IPR001450,InterPro:IPR014297,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:Q7CJE4,NCBI_GP:CAL21570.1;Name=CAL21570.1;Note=Similar to Escherichia coli anaerobic dimethyl sulfoxide reductase chain B protein DmsB SW:DMSB_ECOLI (P18776) (204 aa) fasta scores: E(): 0%2C 61.1%25 id in 203 aa%2Cand to Yersinia pestis probable dimethyl sulfoxide reductase subunit B protein DmsB TR:Q9X6B5 (EMBL:AF135170) (205 aa) fasta scores: E(): 0%2C 63.5%25 id in 203 aa. Similar to YPO3324 (63.5%25 identity in 203 aa overlap);gbkey=CDS;gene=dmsB;inference=similar to sequence:INSDC:AF135170;product=putative dimethyl sulfoxide reductase chain B protein;protein_id=CAL21570.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3315553	3315624	.	+	.	ID=id7052;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 35.60%2C E-value 1.1e-06;gbkey=misc_feature;gene=dmsB;inference=protein motif:PF00037
AL590842.1	EMBL	sequence_feature	3315574	3315609	.	+	.	ID=id7053;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;gene=dmsB;inference=protein motif:ProSite:PS00198
AL590842.1	EMBL	gene	3315899	3316675	.	+	.	ID=gene2923;Name=dmsC;gbkey=Gene;gene=dmsC;gene_biotype=protein_coding;locus_tag=YPO2967
AL590842.1	EMBL	CDS	3315899	3316675	.	+	0	ID=cds2880;Parent=gene2923;Dbxref=GOA:Q0WCU7,InterPro:IPR007059,UniProtKB/TrEMBL:Q0WCU7,NCBI_GP:CAL21571.1;Name=CAL21571.1;Note=Similar to Escherichia coli anaerobic dimethyl sulfoxide reductase chain C protein DmsC SW:DMSC_ECOLI (P18777) (287 aa) fasta scores: E(): 1.1e-10%2C 32.6%25 id in 273 aa%2C and to Yersinia pestis probable dimethyl sulfoxide reductase subunit C DmsC TR:Q9X6B4 (EMBL:AF135170) (286 aa) fasta scores: E(): 4.7e-12%2C 33.7%25 id in 276 aa;gbkey=CDS;gene=dmsC;inference=similar to sequence:INSDC:AF135170;product=putative dimethyl sulfoxide reductase chain C protein;protein_id=CAL21571.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3315908	3315976	.	+	.	ID=id7054;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=dmsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3316013	3316081	.	+	.	ID=id7055;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=dmsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3316139	3316198	.	+	.	ID=id7056;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=dmsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3316217	3316285	.	+	.	ID=id7057;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=dmsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3316328	3316384	.	+	.	ID=id7058;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=dmsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3316403	3316471	.	+	.	ID=id7059;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=dmsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3316499	3316567	.	+	.	ID=id7060;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=dmsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3316586	3316651	.	+	.	ID=id7061;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=dmsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3317088	3317753	.	+	.	ID=gene2924;Name=YPO2968;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2968
AL590842.1	EMBL	CDS	3317088	3317753	.	+	0	ID=cds2881;Parent=gene2924;Dbxref=InterPro:IPR020945,InterPro:IPR026269,UniProtKB/TrEMBL:Q0WCU6,NCBI_GP:CAL21572.1;Name=CAL21572.1;Note=Similar to Yersinia pestis hypothetical protein TR:Q9X6B3 (EMBL:AF135170) (236 aa) fasta scores: E(): 3.7e-16%2C 36.2%25 id in 210 aa%2C and to Escherichia coli hypothetical protein YnfI SW:YNFI_ECOLI (P76174) (207 aa) fasta scores: E(): 3.6e-18%2C 34.6%25 id in 191 aa. Lack of similarity at the N-terminus;gbkey=CDS;inference=similar to sequence:INSDC:AF135170;product=conserved hypothetical protein;protein_id=CAL21572.1;transl_table=11
AL590842.1	EMBL	gene	3317750	3318319	.	+	.	ID=gene2925;Name=YPO2969;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2969
AL590842.1	EMBL	CDS	3317750	3318319	.	+	0	ID=cds2882;Parent=gene2925;Dbxref=GOA:Q7CJE5,InterPro:IPR001450,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:Q7CJE5,NCBI_GP:CAL21573.1;Name=CAL21573.1;Note=Similar to Rhodobacter sphaeroides probable iron-sulphur containing protein NapF TR:O86474 (EMBL:Z46806) (160 aa) fasta scores: E(): 1.2e-09%2C 30.3%25 id in 145 aa%2C and to Haemophilus influenzae hypothetical ferredoxin-type protein HI1043 SW:YA43_HAEIN (P44101) (166 aa) fasta scores: E(): 8.3e-12%2C 32.2%25 id in 177 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z46806;product=putative iron-sulphur protein;protein_id=CAL21573.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3317930	3318001	.	+	.	ID=id7062;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 20.10%2C E-value 0.002;gbkey=misc_feature;inference=protein motif:PF00037
AL590842.1	EMBL	sequence_feature	3317951	3317986	.	+	.	ID=id7063;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00198
AL590842.1	EMBL	sequence_feature	3318038	3318109	.	+	.	ID=id7064;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 18.50%2C E-value 0.0035;gbkey=misc_feature;inference=protein motif:PF00037
AL590842.1	EMBL	sequence_feature	3318236	3318307	.	+	.	ID=id7065;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 26.00%2C E-value 0.00024;gbkey=misc_feature;inference=protein motif:PF00037
AL590842.1	EMBL	sequence_feature	3318257	3318292	.	+	.	ID=id7066;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00198
AL590842.1	EMBL	gene	3318565	3319221	.	-	.	ID=gene2926;Name=YPO2970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2970
AL590842.1	EMBL	CDS	3318565	3319221	.	-	0	ID=cds2883;Parent=gene2926;Dbxref=InterPro:IPR008517,UniProtKB/TrEMBL:Q7CJE6,NCBI_GP:CAL21574.1;Name=CAL21574.1;Note=Similar to Neisseria meningitidis putative lipoprotein GNA1162 TR:Q9JPN0 (EMBL:AF226570) (215 aa) fasta scores: E(): 0%2C 55.3%25 id in 206 aa. N-terminal region similar to Pseudomonas aeruginosa hypothetical protein PA0047 TR:AAG03437 (EMBL:AE004444) (169 aa) fasta scores: E(): 0%2C 63.5%25 id in 167 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF226570;product=putative lipoprotein;protein_id=CAL21574.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3319165	3319197	.	-	.	ID=id7067;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	3319218	3319574	.	-	.	ID=gene2927;Name=YPO2971;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2971
AL590842.1	EMBL	CDS	3319218	3319574	.	-	0	ID=cds2884;Parent=gene2927;Dbxref=InterPro:IPR014508,UniProtKB/TrEMBL:Q0WCU3,NCBI_GP:CAL21575.1;Name=CAL21575.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA0046 TR:AAG03436 (EMBL:AE004444) (117 aa) fasta scores: E(): 2.1e-16%2C 45.6%25 id in 114 aa%2C and to Neisseria meningitidis (serogroup A) putative periplasmic protein NMA1334 TR:Q9JQZ2 (EMBL:AL162755) (123 aa) fasta scores: E(): 4.2e-10%2C 37.9%25 id in 116 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL162755;product=putative lipoprotein;protein_id=CAL21575.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3319518	3319550	.	-	.	ID=id7068;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	3319601	3320272	.	-	.	ID=gene2928;Name=YPO2972;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2972
AL590842.1	EMBL	CDS	3319601	3320272	.	-	0	ID=cds2885;Parent=gene2928;Dbxref=GOA:Q0WCU2,InterPro:IPR005534,InterPro:IPR007195,UniProtKB/TrEMBL:Q0WCU2,NCBI_GP:CAL21576.1;Name=CAL21576.1;Note=Similar to Neisseria meningitidis (serogroup A) putative periplasmic protein NMA1335 TR:Q9JRF1 (EMBL:AL162755) (223 aa) fasta scores: E(): 0%2C 76.4%25 id in 208 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0045 TR:AAG03435 (EMBL:AE004444) (228 aa) fasta scores: E(): 0%2C 72.7%25 id in 220 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL162755;product=putative lipoprotein;protein_id=CAL21576.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3319838	3319861	.	-	.	ID=id7069;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3320213	3320245	.	-	.	ID=id7070;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	3320862	3321293	.	+	.	ID=gene2929;Name=YPO2973;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2973
AL590842.1	EMBL	CDS	3320862	3321293	.	+	0	ID=cds2886;Parent=gene2929;Dbxref=UniProtKB/TrEMBL:Q0WCU1,NCBI_GP:CAL21577.1;Name=CAL21577.1;Note=Weakly similar to Escherichia coli hypothetical protein YdcQ SW:YDCQ_ECOLI (P76107) (145 aa) fasta scores: E(): 7.1e-07%2C 27.6%25 id in 134 aa;gbkey=CDS;product=hypothetical protein;protein_id=CAL21577.1;transl_table=11
AL590842.1	EMBL	gene	3321388	3321912	.	-	.	ID=gene2930;Name=YPO2974;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2974
AL590842.1	EMBL	CDS	3321388	3321912	.	-	0	ID=cds2887;Parent=gene2930;Dbxref=GOA:Q0WCU0,InterPro:IPR016174,UniProtKB/TrEMBL:Q0WCU0,NCBI_GP:CAL21578.1;Name=CAL21578.1;Note=Similar to Escherichia coli cytochrome b561 CybB SW:C561_ECOLI (P08732) (176 aa) fasta scores: E(): 4.5e-26%2C42.3%25 id in 175 aa%2C and to Yersinia pestis probable cytochrome b561 CybB SW:C561_YERPE (Q9X6B2) (176 aa) fasta scores: E(): 1.8e-26%2C 39.4%25 id in 175 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative B-type cytochrome;protein_id=CAL21578.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3321430	3321495	.	-	.	ID=id7071;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3321586	3321651	.	-	.	ID=id7072;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3321727	3321780	.	-	.	ID=id7073;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3321826	3321891	.	-	.	ID=id7074;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3322157	3323392	.	-	.	ID=gene2931;Name=YPO2975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2975
AL590842.1	EMBL	CDS	3322157	3323392	.	-	0	ID=cds2888;Parent=gene2931;Dbxref=GOA:Q7CJE7,InterPro:IPR004839,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q7CJE7,NCBI_GP:CAL21579.1;Name=CAL21579.1;Note=Similar to Pseudomonas aeruginosa probable aminotransferase PA4715 TR:AAG08101 (EMBL:AE004885) (411 aa) fasta scores: E(): 0%2C 90.1%25 id in 404 aa%2C and to Escherichia coli hypothetical aminotransferase YfdZ SW:YFDZ_ECOLI (P77434) (412 aa) fasta scores: E(): 0%2C 87.8%25 id in 411 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004885;product=putative aminotransferase;protein_id=CAL21579.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3322178	3322201	.	-	.	ID=id7075;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3322205	3323377	.	-	.	ID=id7076;Note=Pfam match to entry PF00155 aminotran_1%2CAminotransferases class-I%2C score 139.20%2C E-value 7.3e-38;gbkey=misc_feature;inference=protein motif:PF00155
AL590842.1	EMBL	gene	3323658	3324905	.	+	.	ID=gene2932;Name=YPO2976;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2976
AL590842.1	EMBL	CDS	3323658	3324905	.	+	0	ID=cds2889;Parent=gene2932;Dbxref=InterPro:IPR010856,InterPro:IPR027443,UniProtKB/TrEMBL:Q7CJE8,NCBI_GP:CAL21580.1;Name=CAL21580.1;Note=Similar to Escherichia coli hypothetical protein YbiU SW:YBIU_ECOLI (P75791) (421 aa) fasta scores: E(): 0%2C50.2%25 id in 420 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21580.1;transl_table=11
AL590842.1	EMBL	gene	3324983	3325954	.	-	.	ID=gene2933;Name=glk;gbkey=Gene;gene=glk;gene_biotype=protein_coding;locus_tag=YPO2977
AL590842.1	EMBL	CDS	3324983	3325954	.	-	0	ID=cds2890;Parent=gene2933;Dbxref=GOA:P58619,InterPro:IPR003836,NCBI_GP:CAL21581.1;Name=CAL21581.1;Note=Similar to Escherichia coli glucokinase Glk SW:HXKG_ECOLI (P46880) (321 aa) fasta scores: E(): 0%2C 79.4%25 id in 321 aa%2C and to Neisseria meningitidis (serogroup A) glucokinase Glk TR:Q9JQX3 (EMBL:AL162756) (328 aa) fasta scores: E(): 0%2C 46.6%25 id in 313 aa;gbkey=CDS;gene=glk;inference=similar to sequence:INSDC:AL162756;product=glucokinase;protein_id=CAL21581.1;transl_table=11
AL590842.1	EMBL	gene	3326135	3326662	.	-	.	ID=gene2934;Name=YPO2978;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2978
AL590842.1	EMBL	CDS	3326135	3326662	.	-	0	ID=cds2891;Parent=gene2934;Dbxref=InterPro:IPR007896,UniProtKB/TrEMBL:Q7CJE9,NCBI_GP:CAL21582.1;Name=CAL21582.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA2880 TR:AAG06268 (EMBL:AE004714) (171 aa) fasta scores: E(): 6e-23%2C 46.0%25 id in 139 aa%2C and to Vitreoscilla sp hypothetical protein TR:Q9XD48 (EMBL:AF114793) (152 aa) fasta scores: E(): 2.8e-17%2C 41.4%25 id in 140 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF114793;product=putative membrane protein;protein_id=CAL21582.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3326219	3326284	.	-	.	ID=id7077;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3326297	3326362	.	-	.	ID=id7078;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3326423	3326479	.	-	.	ID=id7079;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3326510	3326575	.	-	.	ID=id7080;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3326714	3327592	.	+	.	ID=gene2935;Name=YPO2979;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2979
AL590842.1	EMBL	CDS	3326714	3327592	.	+	0	ID=cds2892;Parent=gene2935;Dbxref=GOA:Q7CJF0,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CJF0,NCBI_GP:CAL21583.1;Name=CAL21583.1;Note=Similar to Pseudomonas aeruginosa exotoxin A transcriptional regulator PtxR TR:P72131 (EMBL:U35068) (312 aa) fasta scores: E(): 1.9e-08%2C 28.1%25 id in 270 aa%2C and to Pseudomonas aeruginosa probable transcriptional regulator PA2879 TR:AAG06267 (EMBL:AE004714) (296 aa) fasta scores: E(): 0%2C 51.0%25 id in 292 aa;gbkey=CDS;inference=similar to sequence:INSDC:U35068;product=putative lysR-family transcriptional regulatory protein;protein_id=CAL21583.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3326726	3327157	.	+	.	ID=id7081;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 98.00%2C E-value 1.9e-25;gbkey=misc_feature;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	3326765	3326830	.	+	.	ID=id7082;Note=Predicted helix-turn-helix motif with score 1575 (+4.55 SD) at aa 18-39%2C sequence GSFSAAARKLRKSQSTISTAIA;gbkey=misc_feature
AL590842.1	EMBL	gene	3327728	3328717	.	+	.	ID=gene2936;Name=YPO2980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2980
AL590842.1	EMBL	CDS	3327728	3328717	.	+	0	ID=cds2893;Parent=gene2936;Dbxref=InterPro:IPR001395,InterPro:IPR023210,UniProtKB/TrEMBL:Q0WCT4,NCBI_GP:CAL21584.1;Name=CAL21584.1;Note=Similar to Homo sapiens voltage-gated potassium channel beta-2 protein Kv-beta-2 TR:Q13303 (EMBL:U33429) (367 aa) fasta scores: E(): 3.3e-31%2C 33.9%25 id in 339 aa%2Cand to Streptomyces coelicolor putative ion channel subunit SC5H1.21C TR:Q9X7S9 (EMBL:AL049863) (319 aa) fasta scores: E(): 0%2C 62.1%25 id in 317 aa;gbkey=CDS;inference=similar to sequence:INSDC:U33429;product=putative ion channel protein;protein_id=CAL21584.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3328079	3328249	.	+	.	ID=id7083;Note=Pfam match to entry PF00248 aldo_ket_red%2C Aldo/keto reductase family%2C score 19.90%2C E-value 0.00012;gbkey=misc_feature;inference=protein motif:PF00248
AL590842.1	EMBL	gene	3328888	3329301	.	+	.	ID=gene2937;Name=YPO2981;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2981
AL590842.1	EMBL	CDS	3328888	3329301	.	+	0	ID=cds2894;Parent=gene2937;Dbxref=InterPro:IPR019638,UniProtKB/TrEMBL:Q0WCT3,NCBI_GP:CAL21585.1;Name=CAL21585.1;Note=Similar to Escherichia coli hypothetical protein YpeC SW:YPEC_ECOLI (P76527) (108 aa) fasta scores: E(): 3.7e-12%2C 43.7%25 id in 126 aa%2C and to Escherichia coli hypothetical protein YaaX SW:YAAX_ECOLI (P75616) (98 aa) fasta scores: E(): 9.6e-07%2C 35.7%25 id in 112 aa. Lack of similarity at the N-terminus. Possible alternative translational start sites.;gbkey=CDS;product=putative exported protein;protein_id=CAL21585.1;transl_table=11
AL590842.1	EMBL	gene	3329394	3330623	.	-	.	ID=gene2938;Name=mntH;gbkey=Gene;gene=mntH;gene_biotype=protein_coding;locus_tag=YPO2982
AL590842.1	EMBL	CDS	3329394	3330623	.	-	0	ID=cds2895;Parent=gene2938;Dbxref=GOA:Q8ZCK2,InterPro:IPR001046,NCBI_GP:CAL21586.1;Name=CAL21586.1;Note=probale NRAMP (natural resistance-associated macrophage proteins) family protein. Similar to Escherichia coli manganese transport protein MntH SW:MNTH_ECOLI (P77145) (412 aa) fasta scores: E(): 0%2C 77.7%25 id in 408 aa%2Cand to Salmonella typhimurium manganese transport protein MntH SW:MNTH_SALTY (Q9RPF4) (413 aa) fasta scores: E(): 0%2C77.5%25 id in 408 aa;gbkey=CDS;gene=mntH;inference=protein motif:TMHMM:2.0;product=manganese transport protein MntH;protein_id=CAL21586.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3329403	3329468	.	-	.	ID=id7084;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=mntH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3329472	3330512	.	-	.	ID=id7085;Note=Pfam match to entry PF01566 Nramp%2C Natural resistance-associated macrophage protein%2C score 594.70%2CE-value 5.5e-175;gbkey=misc_feature;gene=mntH;inference=protein motif:PF01566
AL590842.1	EMBL	sequence_feature	3329508	3329558	.	-	.	ID=id7086;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=mntH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3329571	3329636	.	-	.	ID=id7087;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=mntH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3329700	3329765	.	-	.	ID=id7088;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=mntH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3329841	3329906	.	-	.	ID=id7089;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=mntH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3329970	3330035	.	-	.	ID=id7090;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=mntH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3330102	3330167	.	-	.	ID=id7091;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=mntH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3330189	3330254	.	-	.	ID=id7092;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=mntH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3330270	3330335	.	-	.	ID=id7093;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=mntH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3330396	3330461	.	-	.	ID=id7094;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=mntH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3330507	3330572	.	-	.	ID=id7095;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=mntH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3331058	3332242	.	+	.	ID=gene2939;Name=cru;gbkey=Gene;gene=cru;gene_biotype=protein_coding;gene_synonym=nupC;locus_tag=YPO2983
AL590842.1	EMBL	CDS	3331058	3332242	.	+	0	ID=cds2896;Parent=gene2939;Dbxref=GOA:Q7CJF1,InterPro:IPR002668,InterPro:IPR008276,InterPro:IPR011657,UniProtKB/TrEMBL:Q7CJF1,NCBI_GP:CAL21587.1;Name=CAL21587.1;Note=Similar to Escherichia coli nucleoside permease NupC SW:NUPC_ECOLI (P33031) (400 aa) fasta scores: E(): 0%2C 81.0%25 id in 400 aa%2C and to Bacillus subtilis pyrimidine nucleoside transport protein NupC SW:NUPC_BACSU (P39141) (393 aa) fasta scores: E(): 0%2C 60.0%25 id in 385 aa;gbkey=CDS;gene=cru;inference=protein motif:TMHMM:2.0;product=nucleoside permease;protein_id=CAL21587.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3331061	3332239	.	+	.	ID=id7096;Note=Pfam match to entry PF01773 Nucleoside_tra2%2C Na+ dependent nucleoside transporter%2C score 650.30%2C E-value 1.1e-191;gbkey=misc_feature;gene=cru;inference=protein motif:PF01773
AL590842.1	EMBL	sequence_feature	3331067	3331120	.	+	.	ID=id7097;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=cru;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3331139	3331207	.	+	.	ID=id7098;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=cru;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3331235	3331294	.	+	.	ID=id7099;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=cru;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3331313	3331381	.	+	.	ID=id7100;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=cru;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3331553	3331621	.	+	.	ID=id7101;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=cru;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3331634	3331702	.	+	.	ID=id7102;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=cru;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3331778	3331846	.	+	.	ID=id7103;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=cru;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3331865	3331933	.	+	.	ID=id7104;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=cru;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3332063	3332131	.	+	.	ID=id7105;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=cru;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3332168	3332236	.	+	.	ID=id7106;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=cru;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	tRNA	3332619	3332694	.	-	.	ID=rna60;Note=tRNA Lys anticodon TTT%2C Cove score 95.27;gbkey=tRNA;product=tRNA-Lys
AL590842.1	EMBL	exon	3332619	3332694	.	-	.	ID=id7107;Parent=rna60;Note=tRNA Lys anticodon TTT%2C Cove score 95.27;gbkey=tRNA;product=tRNA-Lys
AL590842.1	EMBL	tRNA	3332894	3332969	.	-	.	ID=rna61;Note=tRNA Val anticodon TAC%2C Cove score 90.85;gbkey=tRNA;product=tRNA-Val
AL590842.1	EMBL	exon	3332894	3332969	.	-	.	ID=id7108;Parent=rna61;Note=tRNA Val anticodon TAC%2C Cove score 90.85;gbkey=tRNA;product=tRNA-Val
AL590842.1	EMBL	tRNA	3333014	3333089	.	-	.	ID=rna62;Note=tRNA Val anticodon TAC%2C Cove score 90.85;gbkey=tRNA;product=tRNA-Val
AL590842.1	EMBL	exon	3333014	3333089	.	-	.	ID=id7109;Parent=rna62;Note=tRNA Val anticodon TAC%2C Cove score 90.85;gbkey=tRNA;product=tRNA-Val
AL590842.1	EMBL	tRNA	3333126	3333201	.	-	.	ID=rna63;Note=tRNA Val anticodon TAC%2C Cove score 90.85;gbkey=tRNA;product=tRNA-Val
AL590842.1	EMBL	exon	3333126	3333201	.	-	.	ID=id7110;Parent=rna63;Note=tRNA Val anticodon TAC%2C Cove score 90.85;gbkey=tRNA;product=tRNA-Val
AL590842.1	EMBL	gene	3333476	3334891	.	+	.	ID=gene2940;Name=gltX;gbkey=Gene;gene=gltX;gene_biotype=protein_coding;locus_tag=YPO2984
AL590842.1	EMBL	CDS	3333476	3334891	.	+	0	ID=cds2897;Parent=gene2940;Dbxref=GOA:Q8ZCK0,InterPro:IPR000924,InterPro:IPR001412,InterPro:IPR004527,InterPro:IPR008925,InterPro:IPR014729,InterPro:IPR020058,InterPro:IPR020061,InterPro:IPR020751,NCBI_GP:CAL21588.1;Name=CAL21588.1;Note=Similar to Escherichia coli glutamyl-tRNA synthetase GltX SW:SYE_ECOLI (P04805) (471 aa) fasta scores: E(): 0%2C84.1%25 id in 471 aa%2C and to Haemophilus influenzae glutamyl-tRNA synthetase GltX SW:SYE_HAEIN (P43818) (480 aa) fasta scores: E(): 0%2C 72.1%25 id in 469 aa;gbkey=CDS;gene=gltX;product=glutamyl-tRNA synthetase;protein_id=CAL21588.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3333479	3334858	.	+	.	ID=id7111;Note=Pfam match to entry PF00749 tRNA-synt_1c%2C tRNA synthetases class I (E and Q)%2C score 757.70%2C E-value 4.6e-224;gbkey=misc_feature;gene=gltX;inference=protein motif:PF00749
AL590842.1	EMBL	sequence_feature	3333500	3333535	.	+	.	ID=id7112;Note=PS00178 Aminoacyl-transfer RNA synthetases class-I signature.;gbkey=misc_feature;gene=gltX;inference=protein motif:ProSite:PS00178
AL590842.1	EMBL	repeat_region	3334939	3335650	.	+	.	ID=id7113;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	3335084	3335542	.	+	.	ID=gene2941;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO2985
AL590842.1	EMBL	CDS	3335084	3335542	.	+	0	ID=cds2898;Parent=gene2941;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL21589.1;Name=CAL21589.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL21589.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3335138	3335449	.	+	.	ID=id7114;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	tRNA	3335833	3335908	.	+	.	ID=rna64;Note=tRNA Ala anticodon GGC%2C Cove score 86.95;gbkey=tRNA;product=tRNA-Ala
AL590842.1	EMBL	exon	3335833	3335908	.	+	.	ID=id7115;Parent=rna64;Note=tRNA Ala anticodon GGC%2C Cove score 86.95;gbkey=tRNA;product=tRNA-Ala
AL590842.1	EMBL	tRNA	3335986	3336061	.	+	.	ID=rna65;Note=tRNA Ala anticodon GGC%2C Cove score 86.95;gbkey=tRNA;product=tRNA-Ala
AL590842.1	EMBL	exon	3335986	3336061	.	+	.	ID=id7116;Parent=rna65;Note=tRNA Ala anticodon GGC%2C Cove score 86.95;gbkey=tRNA;product=tRNA-Ala
AL590842.1	EMBL	gene	3336256	3336861	.	+	.	ID=gene2942;Name=YPO2986;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2986
AL590842.1	EMBL	CDS	3336256	3336861	.	+	0	ID=cds2899;Parent=gene2942;Dbxref=InterPro:IPR009267,UniProtKB/TrEMBL:Q0WCS8,NCBI_GP:CAL21590.1;Name=CAL21590.1;Note=Similar to Vibrio cholerae hypothetical protein VCA0380 TR:Q9KMH4 (EMBL:AE004374) (201 aa) fasta scores: E(): 9.9e-10%2C 42.9%25 id in 198 aa. CDS is truncated at the N-terminus in comparison to the V. cholerae protein;gbkey=CDS;inference=similar to sequence:INSDC:AE004374;product=conserved hypothetical protein;protein_id=CAL21590.1;transl_table=11
AL590842.1	EMBL	gene	3336993	3337340	.	+	.	ID=gene2943;Name=YPO2987;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2987
AL590842.1	EMBL	CDS	3336993	3337340	.	+	0	ID=cds2900;Parent=gene2943;Dbxref=InterPro:IPR025577,UniProtKB/TrEMBL:Q0WCS7,NCBI_GP:CAL21591.1;Name=CAL21591.1;Note=no significant database hits to the full length CDS. Weakly similar to internal region of Bartonella henselae antigen protein TR:Q45198 (EMBL:U23447) (160 aa) fasta scores: E(): 9.6%2C 36.4%25 id in 88 aa. N-terminal region of the CDS is serine rich%2C 13 residues out of the first 25. Contains coiled-coil domain%2C residues 32 to 70;gbkey=CDS;inference=similar to sequence:INSDC:U23447;product=putative exported protein;protein_id=CAL21591.1;transl_table=11
AL590842.1	EMBL	gene	3337441	3337656	.	-	.	ID=gene2944;Name=YPO2988;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2988
AL590842.1	EMBL	CDS	3337441	3337656	.	-	0	ID=cds2901;Parent=gene2944;Dbxref=InterPro:IPR024530,UniProtKB/TrEMBL:Q0WCS6,NCBI_GP:CAL21592.1;Name=CAL21592.1;Note=Similar to Escherichia coli hypothetical protein YpeB SW:YPEB_ECOLI (P56604) (72 aa) fasta scores: E(): 2.8e-20%2C 79.7%25 id in 69 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA3612 TR:AAG07000 (EMBL:AE004781) (73 aa) fasta scores: E(): 2.6e-18%2C 66.7%25 id in 69 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004781;product=conserved hypothetical protein;protein_id=CAL21592.1;transl_table=11
AL590842.1	EMBL	gene	3337676	3339688	.	-	.	ID=gene2945;Name=dnaL;gbkey=Gene;gene=dnaL;gene_biotype=protein_coding;gene_synonym=lig,ligA,lop,pdeC;locus_tag=YPO2989
AL590842.1	EMBL	CDS	3337676	3339688	.	-	0	ID=cds2902;Parent=gene2945;Dbxref=GOA:Q7CJF3,InterPro:IPR001357,InterPro:IPR001679,InterPro:IPR003583,InterPro:IPR004149,InterPro:IPR004150,InterPro:IPR010994,InterPro:IPR012340,InterPro:IPR013839,InterPro:IPR013840,InterPro:IPR018239,NCBI_GP:CAL21593.1;Name=CAL21593.1;Note=Similar to Escherichia coli DNA ligase LigA SW:DNLJ_ECOLI (P15042) (671 aa) fasta scores: E(): 0%2C 78.5%25 id in 670 aa%2C and to Vibrio cholerae probable DNA ligase VC0971 TR:Q9KTD1 (EMBL:AE004178) (669 aa) fasta scores: E(): 0%2C 65.0%25 id in 669 aa;gbkey=CDS;gene=dnaL;inference=similar to sequence:INSDC:AE004178;product=DNA ligase;protein_id=CAL21593.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3337679	3337909	.	-	.	ID=id7117;Note=Pfam match to entry PF00533 BRCT%2C BRCA1 C Terminus (BRCT) domain%2C score 45.60%2C E-value 1.1e-09;gbkey=misc_feature;gene=dnaL;inference=protein motif:PF00533
AL590842.1	EMBL	sequence_feature	3338000	3338089	.	-	.	ID=id7118;Note=Pfam match to entry PF00633 HHH%2C Helix-hairpin-helix motif.%2C score 28.90%2C E-value 0.00011;gbkey=misc_feature;gene=dnaL;inference=protein motif:PF00633
AL590842.1	EMBL	sequence_feature	3338651	3338698	.	-	.	ID=id7119;Note=PS01056 NAD-dependent DNA ligase signature 2.;gbkey=misc_feature;gene=dnaL;inference=protein motif:ProSite:PS01056
AL590842.1	EMBL	sequence_feature	3338735	3339685	.	-	.	ID=id7120;Note=Pfam match to entry PF01653 DNA_ligase_N%2CNAD-dependent DNA ligase%2C score 679.90%2C E-value 1.2e-200;gbkey=misc_feature;gene=dnaL;inference=protein motif:PF01653
AL590842.1	EMBL	sequence_feature	3339257	3339346	.	-	.	ID=id7121;Note=PS01055 NAD-dependent DNA ligase signature 1.;gbkey=misc_feature;gene=dnaL;inference=protein motif:ProSite:PS01055
AL590842.1	EMBL	gene	3339779	3340765	.	-	.	ID=gene2946;Name=zipA;gbkey=Gene;gene=zipA;gene_biotype=protein_coding;locus_tag=YPO2990
AL590842.1	EMBL	CDS	3339779	3340765	.	-	0	ID=cds2903;Parent=gene2946;Dbxref=GOA:P58492,InterPro:IPR007449,InterPro:IPR011919,NCBI_GP:CAL21594.1;Name=CAL21594.1;Note=Similar to Escherichia coli FtsZ-binding cell division protein ZipA SW:ZIPA_ECOLI (P77173) (328 aa) fasta scores: E(): 0%2C 54.4%25 id in 340 aa%2C and to Vibrio cholerae cell division protein ZipA TR:Q9KTD2 (EMBL:AE004178) (291 aa) fasta scores: E(): 4.1e-24%2C 39.9%25 id in 321 aa;gbkey=CDS;gene=zipA;inference=similar to sequence:INSDC:AE004178;product=putative cell division protein;protein_id=CAL21594.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3340688	3340744	.	-	.	ID=id7122;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=zipA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3341014	3341748	.	+	.	ID=gene2947;Name=cysZ;gbkey=Gene;gene=cysZ;gene_biotype=protein_coding;locus_tag=YPO2991
AL590842.1	EMBL	CDS	3341014	3341748	.	+	0	ID=cds2904;Parent=gene2947;Dbxref=UniProtKB/TrEMBL:Q7CJF4,NCBI_GP:CAL21595.1;Name=CAL21595.1;Note=Similar to Escherichia coli hypothetical protein CysZ SW:CYSZ_ECOLI (P12610) (253 aa) fasta scores: E(): 0%2C79.0%25 id in 238 aa%2C and to Salmonella typhimurium hypothetical protein CysZ SW:CYSZ_SALTY (P12673) (253 aa) fasta scores: E(): 0%2C 76.5%25 id in 238 aa;gbkey=CDS;gene=cysZ;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL21595.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3341071	3341139	.	+	.	ID=id7123;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=cysZ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3341197	3341265	.	+	.	ID=id7124;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=cysZ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3341437	3341505	.	+	.	ID=id7125;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=cysZ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3341626	3341694	.	+	.	ID=id7126;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=cysZ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3341905	3342873	.	+	.	ID=gene2948;Name=cysK;gbkey=Gene;gene=cysK;gene_biotype=protein_coding;gene_synonym=cysZ;locus_tag=YPO2992
AL590842.1	EMBL	CDS	3341905	3342873	.	+	0	ID=cds2905;Parent=gene2948;Dbxref=GOA:Q7CJF5,InterPro:IPR001216,InterPro:IPR001926,InterPro:IPR005856,InterPro:IPR005859,UniProtKB/TrEMBL:Q7CJF5,NCBI_GP:CAL21596.1;Name=CAL21596.1;Note=Similar to Escherichia coli cysteine synthase A CysK SW:CYSK_ECOLI (P11096) (322 aa) fasta scores: E(): 0%2C 87.6%25 id in 322 aa%2C and to Salmonella typhimurium cysteine synthase A CysK SW:CYSK_SALTY (P12674) (322 aa) fasta scores: E(): 0%2C 87.3%25 id in 322 aa;gbkey=CDS;gene=cysK;product=cysteine synthase A;protein_id=CAL21596.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3341926	3342807	.	+	.	ID=id7127;Note=Pfam match to entry PF00291 PALP%2CPyridoxal-phosphate dependent enzyme%2C score 436.90%2C E-value 1.8e-127;gbkey=misc_feature;gene=cysK;inference=protein motif:PF00291
AL590842.1	EMBL	sequence_feature	3341995	3342051	.	+	.	ID=id7128;Note=PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site.;gbkey=misc_feature;gene=cysK;inference=protein motif:ProSite:PS00901
AL590842.1	EMBL	gene	3343372	3343629	.	+	.	ID=gene2949;Name=hpr;gbkey=Gene;gene=hpr;gene_biotype=protein_coding;gene_synonym=ptsH;locus_tag=YPO2993
AL590842.1	EMBL	CDS	3343372	3343629	.	+	0	ID=cds2906;Parent=gene2949;Dbxref=GOA:Q7CJF6,InterPro:IPR000032,InterPro:IPR001020,InterPro:IPR002114,UniProtKB/TrEMBL:Q7CJF6,NCBI_GP:CAL21597.1;Name=CAL21597.1;Note=Probable phosphocarrier protein component of a phosphoenolpyruvate-dependent phosphotransferase system (PTS). Similar to Escherichia coli and Salmonella typhimurium phosphocarrier protein PtsH SW:PTHP_ECOLI (P07006) (85 aa) fasta scores: E(): 4.9e-30%2C 97.6%25 id in 85 aa%2C and to Klebsiella pneumoniae phosphocarrier protein PtsH SW:PTHP_KLEPN (P16481) (85 aa) fasta scores: E(): 8e-30%2C 96.5%25 id in 85 aa;gbkey=CDS;gene=hpr;product=PTS system%2C phosphocarrier protein;protein_id=CAL21597.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3343372	3343602	.	+	.	ID=id7129;Note=Pfam match to entry PF00381 PTS-HPr%2C PTS HPr component phosphorylation sites%2C score 153.60%2C E-value 3.4e-42;gbkey=misc_feature;gene=hpr;inference=protein motif:PF00381
AL590842.1	EMBL	sequence_feature	3343408	3343431	.	+	.	ID=id7130;Note=PS00369 PTS HPR component histidine phosphorylation site signature.;gbkey=misc_feature;gene=hpr;inference=protein motif:ProSite:PS00369
AL590842.1	EMBL	sequence_feature	3343486	3343533	.	+	.	ID=id7131;Note=PS00589 PTS HPR component serine phosphorylation site signature.;gbkey=misc_feature;gene=hpr;inference=protein motif:ProSite:PS00589
AL590842.1	EMBL	gene	3343678	3345405	.	+	.	ID=gene2950;Name=ptsI;gbkey=Gene;gene=ptsI;gene_biotype=protein_coding;locus_tag=YPO2994
AL590842.1	EMBL	CDS	3343678	3345405	.	+	0	ID=cds2907;Parent=gene2950;Dbxref=GOA:Q7CJF7,InterPro:IPR000121,InterPro:IPR006318,InterPro:IPR008279,InterPro:IPR008731,InterPro:IPR015813,InterPro:IPR018274,InterPro:IPR023151,InterPro:IPR024692,UniProtKB/TrEMBL:Q7CJF7,NCBI_GP:CAL21598.1;Name=CAL21598.1;Note=Probable enzyme I component of a phosphoenolpyruvate-dependent phosphotransferase system (PTS). Similar to Salmonella typhimurium phosphoenolpyruvate-protein phosphotransferase protein PtsI SW:PT1_SALTY (P12654) (575 aa) fasta scores: E(): 0%2C 87.1%25 id in 575 aa%2C and to Escherichia coli phosphoenolpyruvate-protein phosphotransferase protein PtsI SW:PT1_ECOLI (P08839) (575 aa) fasta scores: E(): 0%2C 86.8%25 id in 575 aa;gbkey=CDS;gene=ptsI;product=PTS sytem%2C enzyme I component;protein_id=CAL21598.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3344146	3345189	.	+	.	ID=id7132;Note=Pfam match to entry PF00391 PEP-utilizers%2CPEP-utilizing enzymes%2C score 730.60%2C E-value 6.9e-216;gbkey=misc_feature;gene=ptsI;inference=protein motif:PF00391
AL590842.1	EMBL	sequence_feature	3344227	3344262	.	+	.	ID=id7133;Note=PS00370 PEP-utilizing enzymes phosphorylation site signature.;gbkey=misc_feature;gene=ptsI;inference=protein motif:ProSite:PS00370
AL590842.1	EMBL	sequence_feature	3345016	3345072	.	+	.	ID=id7134;Note=PS00742 PEP-utilizing enzymes signature 2.;gbkey=misc_feature;gene=ptsI;inference=protein motif:ProSite:PS00742
AL590842.1	EMBL	gene	3345454	3345963	.	+	.	ID=gene2951;Name=crr;gbkey=Gene;gene=crr;gene_biotype=protein_coding;gene_synonym=gsr,iex,tgs,treD;locus_tag=YPO2995
AL590842.1	EMBL	CDS	3345454	3345963	.	+	0	ID=cds2908;Parent=gene2951;Dbxref=GOA:Q7CJF8,InterPro:IPR001127,InterPro:IPR011055,UniProtKB/TrEMBL:Q7CJF8,NCBI_GP:CAL21599.1;Name=CAL21599.1;Note=Probable glucose-specific IIA component of a phosphoenolpyruvate-dependent phosphotransferase system (PTS). Similar to Salmonella typhimurium PTS system%2Cglucose-specific IIA component Crr SW:PTGA_SALTY (P02908) (168 aa) fasta scores: E(): 0%2C 94.0%25 id in 168 aa%2C and to Escherichia coli PTS system%2C glucose-specific IIA component Crr SW:PTGA_ECOLI (P08837) (168 aa) fasta scores: E(): 0%2C92.9%25 id in 168 aa;gbkey=CDS;gene=crr;product=PTS system%2C glucose-specific IIA component;protein_id=CAL21599.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3345568	3345882	.	+	.	ID=id7135;Note=Pfam match to entry PF00358 PTS_EIIA_1%2Cphosphoenolpyruvate-dependent sugar phosphotransferase system%2C EIIA 1%2C score 222.10%2C E-value 8.1e-63;gbkey=misc_feature;gene=crr;inference=protein motif:PF00358
AL590842.1	EMBL	sequence_feature	3345706	3345744	.	+	.	ID=id7136;Note=PS00371 PTS EIIA domains phosphorylation site signature 1.;gbkey=misc_feature;gene=crr;inference=protein motif:ProSite:PS00371
AL590842.1	EMBL	repeat_region	3345998	3346709	.	-	.	ID=id7137;Note=Contains a 'A' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	3346106	3346564	.	-	.	ID=gene2952;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO2996
AL590842.1	EMBL	CDS	3346106	3346564	.	-	0	ID=cds2909;Parent=gene2952;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL21600.1;Name=CAL21600.1;Note=Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL21600.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3346199	3346510	.	-	.	ID=id7138;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	3346834	3348183	.	-	.	ID=gene2953;Name=YPO2997;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2997
AL590842.1	EMBL	CDS	3346834	3348183	.	-	0	ID=cds2910;Parent=gene2953;Dbxref=GOA:Q7CJG0,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,UniProtKB/TrEMBL:Q7CJG0,NCBI_GP:CAL21601.1;Name=CAL21601.1;Note=Similar to Escherichia coli sensor protein BaeS SW:BAES_ECOLI (P30847) (467 aa) fasta scores: E(): 6.7e-19%2C26.3%25 id in 480 aa%2C and to Neisseria meningitidis sensor histidine kinase NMB0594 TR:Q9K0K1 (EMBL:AE002415) (468 aa) fasta scores: E(): 2.2e-31%2C 30.2%25 id in 463 aa. Probable histidine kinase protein of a two-component system;gbkey=CDS;inference=similar to sequence:INSDC:AE002415;product=putative two-component system sensor kinase;protein_id=CAL21601.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3346849	3347472	.	-	.	ID=id7139;Note=Pfam match to entry PF00512 signal%2C Histidine kinase%2C score 184.00%2C E-value 2.4e-51;gbkey=misc_feature;inference=protein motif:PF00512
AL590842.1	EMBL	sequence_feature	3347512	3347727	.	-	.	ID=id7140;Note=Pfam match to entry PF00672 DUF5%2C HAMP domain%2C score 54.70%2C E-value 2e-12;gbkey=misc_feature;inference=protein motif:PF00672
AL590842.1	EMBL	sequence_feature	3347659	3347724	.	-	.	ID=id7141;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3348088	3348153	.	-	.	ID=id7142;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3348209	3348892	.	-	.	ID=gene2954;Name=YPO2998;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2998
AL590842.1	EMBL	CDS	3348209	3348892	.	-	0	ID=cds2911;Parent=gene2954;Dbxref=GOA:Q7CJG1,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:Q7CJG1,NCBI_GP:CAL21602.1;Name=CAL21602.1;Note=Similar to Escherichia coli transcriptional regulatory protein OmpR SW:OMPR_ECOLI (P03025) (239 aa) fasta scores: E(): 2.4e-29%2C 41.2%25 id in 226 aa%2C and to Neisseria meningitidis (serogroup A) putative two-component system regulator NMA0798 TR:Q9JRJ9 (EMBL:AL162754) (225 aa) fasta scores: E(): 0%2C 49.8%25 id in 223 aa. Probable response regulator protein of a two-component system;gbkey=CDS;inference=similar to sequence:INSDC:AL162754;product=putative two-component system response regulator;protein_id=CAL21602.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3348224	3348442	.	-	.	ID=id7143;Note=Pfam match to entry PF00486 trans_reg_C%2CTranscriptional regulatory protein%2C C terminal%2C score 80.60%2C E-value 9e-23;gbkey=misc_feature;inference=protein motif:PF00486
AL590842.1	EMBL	sequence_feature	3348560	3348892	.	-	.	ID=id7144;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 104.20%2C E-value 2.6e-27;gbkey=misc_feature;inference=protein motif:PF00072
AL590842.1	EMBL	gene	3349080	3350285	.	+	.	ID=gene2955;Name=YPO2999;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO2999
AL590842.1	EMBL	CDS	3349080	3350285	.	+	0	ID=cds2912;Parent=gene2955;Dbxref=GOA:Q7CJG2,InterPro:IPR006143,UniProtKB/TrEMBL:Q7CJG2,NCBI_GP:CAL21603.1;Name=CAL21603.1;Note=Similar to Escherichia coli stress-induced multidrug export protein AcrA SW:ACRA_ECOLI (P31223) (397 aa) fasta scores: E(): 7.3e-07%2C 27.3%25 id in 348 aa%2C and to Pseudomonas syringae putative membrane fusion protein MfpA TR:AAG22807 (EMBL:AF297012) (400 aa) fasta scores: E(): 0%2C40.3%25 id in 370 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF297012;product=putative HlyD family secretion protein;protein_id=CAL21603.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3349113	3349172	.	+	.	ID=id7145;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3349263	3350219	.	+	.	ID=id7146;Note=Pfam match to entry PF00529 HlyD%2C HlyD family secretion protein%2C score 14.40%2C E-value 0.0025;gbkey=misc_feature;inference=protein motif:PF00529
AL590842.1	EMBL	gene	3350289	3352325	.	+	.	ID=gene2956;Name=YPO3000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3000
AL590842.1	EMBL	CDS	3350289	3352325	.	+	0	ID=cds2913;Parent=gene2956;Dbxref=GOA:Q7CJG3,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR003838,InterPro:IPR017871,InterPro:IPR017911,InterPro:IPR025857,InterPro:IPR027417,NCBI_GP:CAL21604.1;Name=CAL21604.1;Note=Similar to Neisseria meningitidis ABC transporter%2CATP-binding protein NMB0549 TR:Q9K0N7 (EMBL:AE002410) (644 aa) fasta scores: E(): 0%2C 51.6%25 id in 669 aa%2C and to Escherichia coli hypothetical ABC transporter%2C ATP-binding protein YbjZ SW:YBJZ_ECOLI (P75831) (648 aa) fasta scores: E(): 0%2C 52.8%25 id in 669 aa. Similar to YPO1365 (53.8%25 identity in 669 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AE002410;product=putative ABC transporter%2C ATP-binding protein;protein_id=CAL21604.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3350406	3350963	.	+	.	ID=id7147;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 212.60%2C E-value 5.8e-60;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	3350427	3350450	.	+	.	ID=id7148;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3350739	3350783	.	+	.	ID=id7149;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	3351186	3351254	.	+	.	ID=id7150;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3351957	3352025	.	+	.	ID=id7151;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3352092	3352160	.	+	.	ID=id7152;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3352203	3352271	.	+	.	ID=id7153;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3352580	3354226	.	-	.	ID=gene2957;Name=YPO3001;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3001
AL590842.1	EMBL	CDS	3352580	3354226	.	-	0	ID=cds2914;Parent=gene2957;Dbxref=GOA:Q7CJG4,InterPro:IPR001327,InterPro:IPR001763,InterPro:IPR004099,InterPro:IPR013027,InterPro:IPR016156,InterPro:IPR023753,UniProtKB/TrEMBL:Q7CJG4,NCBI_GP:CAL21605.1;Name=CAL21605.1;Note=Similar to Staphylococcus aureus coenzyme A disulfide reductase TR:O52582 (EMBL:AF041467) (438 aa) fasta scores: E(): 0%2C 39.1%25 id in 445 aa%2C and to Vibrio cholerae NADH putative oxidase Vca0644 TR:Q9KLU7 (EMBL:AE004394) (567 aa) fasta scores: E(): 0%2C 49.1%25 id in 566 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF041467;product=putative pyridine nucleotide-disulphide oxidoreductase;protein_id=CAL21605.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3352589	3352864	.	-	.	ID=id7154;Note=Pfam match to entry PF00581 Rhodanese%2CRhodanese-like domain%2C score 34.60%2C E-value 2.3e-06;gbkey=misc_feature;inference=protein motif:PF00581
AL590842.1	EMBL	sequence_feature	3353372	3354214	.	-	.	ID=id7155;Note=Pfam match to entry PF00070 pyr_redox%2C Pyridine nucleotide-disulphide oxidoreductase%2C score 224.10%2C E-value 2e-65;gbkey=misc_feature;inference=protein motif:PF00070
AL590842.1	EMBL	gene	3354286	3355746	.	-	.	ID=gene2958;Name=YPO3002;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3002
AL590842.1	EMBL	CDS	3354286	3355746	.	-	0	ID=cds2915;Parent=gene2958;Dbxref=GOA:Q7CJG5,InterPro:IPR001734,UniProtKB/TrEMBL:Q7CJG5,NCBI_GP:CAL21606.1;Name=CAL21606.1;Note=Similar to Bacillus subtilis hypothetical 52.8 kDa protein YhjB TR:O07556 (EMBL:Y14081) (489 aa) fasta scores: E(): 0%2C 50.2%25 id in 480 aa%2C and to Pyrococcus horikoshii hypothetical 53.4 kDa protein Ph1044 TR:O58753 (EMBL:AP000004) (491 aa) fasta scores: E(): 0%2C 30.1%25 id in 481 aa;gbkey=CDS;inference=similar to sequence:INSDC:Y14081;product=putative permease;protein_id=CAL21606.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3354316	3354381	.	-	.	ID=id7156;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3354427	3354492	.	-	.	ID=id7157;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3354463	3355650	.	-	.	ID=id7158;Note=Pfam match to entry PF00474 SSF%2C Sodium:solute symporter family%2C score -92.40%2C E-value 0.00014;gbkey=misc_feature;inference=protein motif:PF00474
AL590842.1	EMBL	sequence_feature	3354514	3354579	.	-	.	ID=id7159;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3354592	3354657	.	-	.	ID=id7160;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3354721	3354786	.	-	.	ID=id7161;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3354871	3354936	.	-	.	ID=id7162;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3354997	3355047	.	-	.	ID=id7163;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3355117	3355182	.	-	.	ID=id7164;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3355204	3355269	.	-	.	ID=id7165;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3355330	3355395	.	-	.	ID=id7166;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3355465	3355530	.	-	.	ID=id7167;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3355561	3355626	.	-	.	ID=id7168;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3355687	3355734	.	-	.	ID=id7169;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3355743	3355940	.	-	.	ID=gene2959;Name=YPO3003;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3003
AL590842.1	EMBL	CDS	3355743	3355940	.	-	0	ID=cds2916;Parent=gene2959;Dbxref=InterPro:IPR021741,UniProtKB/TrEMBL:Q74SH6,NCBI_GP:CAL21607.1;Name=CAL21607.1;Note=Similar to Bacillus subtilis hypothetical 7.4 kDa protein YhjC TR:O07557 (EMBL:Y14081) (66 aa) fasta scores: E(): 1.2e-09%2C 46.9%25 id in 64 aa;gbkey=CDS;inference=similar to sequence:INSDC:Y14081;product=putative membrane protein;protein_id=CAL21607.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3355773	3355838	.	-	.	ID=id7170;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3355854	3355919	.	-	.	ID=id7171;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	pseudogene	3356083	3357302	.	-	.	ID=gene2960;Name=YPO3004;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO3004;pseudo=true
AL590842.1	EMBL	CDS	3356083	3357302	.	-	0	ID=cds2917;Parent=gene2960;Note=Similar to Lactococcus lactis aminopeptidase P PepP TR:AAK04789 (EMBL:AE006302) (352 aa) fasta scores: E(): 8e-15%2C 26.0%25 id in 392 aa%2C and to the previously sequenced Yersinia pestis protein TR:Q9ZC60 (EMBL:AL031866) (405 aa) fasta scores: E(): 0%2C 70.4%25 id in 402 aa. Similar to YPO1950 (71.6%25 identity in 331 aa overlap). There is a possible frameshift mutation following codon 51. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=similar to sequence:INSDC:AL031866;product=putative aminopeptidase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	3356095	3356775	.	-	.	ID=id7172;Note=Pfam match to entry PF00557 Peptidase_M24%2Cmetallopeptidase family M24%2C score 56.80%2C E-value 4.7e-13;gbkey=misc_feature;inference=protein motif:PF00557
AL590842.1	EMBL	sequence_feature	3357156	3357221	.	-	.	ID=id7173;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3357336	3358517	.	-	.	ID=gene2961;Name=YPO3006;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3006
AL590842.1	EMBL	CDS	3357336	3358517	.	-	0	ID=cds2918;Parent=gene2961;Dbxref=GOA:Q0WCR0,InterPro:IPR004839,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR027619,UniProtKB/TrEMBL:Q0WCR0,NCBI_GP:CAL21609.1;Name=CAL21609.1;Note=Similar to Bacillus subtilis putative aminotransferase B PatB SW:PATB_BACSU (Q08432) (387 aa) fasta scores: E(): 0%2C 45.2%25 id in 387 aa%2C and to Escherichia coli MalY protein SW:MALY_ECOLI (P23256) (390 aa) fasta scores: E(): 0%2C 33.6%25 id in 390 aa;gbkey=CDS;product=putative aminotransferase;protein_id=CAL21609.1;transl_table=11
AL590842.1	EMBL	gene	3359114	3360643	.	+	.	ID=gene2962;Name=YPO3007;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3007
AL590842.1	EMBL	CDS	3359114	3360643	.	+	0	ID=cds2919;Parent=gene2962;Dbxref=InterPro:IPR002035,UniProtKB/TrEMBL:Q7CJG6,NCBI_GP:CAL21610.1;Name=CAL21610.1;Note=Similar to Synechocystis sp. hypothetical 45.8 kDa protein Sll0103 SW:Y103_SYNY3 (Q55874) (420 aa) fasta scores: E(): 9e-17%2C 25.6%25 id in 352 aa%2C and to Escherichia coli hypothetical 63.6 kDa protein in elaB-nuoN intergenic region YfbK SW:YFBK_ECOLI (P76481) (575 aa) fasta scores: E(): 1e-11%2C 24.2%25 id in 306 aa%2C and to inter-alpha-trypsin inhibitor heavy chain H2 precursor from higher organisms (~~24.5%25 id in 208 aa);gbkey=CDS;product=putative membrane protein;protein_id=CAL21610.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3359336	3359404	.	+	.	ID=id7174;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3359513	3360034	.	+	.	ID=id7175;Note=Pfam match to entry PF00092 vwa%2C von Willebrand factor type A domain%2C score 35.20%2C E-value 1.5e-06;gbkey=misc_feature;inference=protein motif:PF00092
AL590842.1	EMBL	gene	3360876	3362420	.	+	.	ID=gene2963;Name=YPO3008;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3008
AL590842.1	EMBL	CDS	3360876	3362420	.	+	0	ID=cds2920;Parent=gene2963;Dbxref=GOA:Q7CJG7,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,UniProtKB/TrEMBL:Q7CJG7,NCBI_GP:CAL21611.1;Name=CAL21611.1;Note=Similar to Escherichia coli sensor protein RcsC SW:RCSC_ECOLI (P14376) (933 aa) fasta scores: E(): 1.2e-17%2C35.1%25 id in 231 aa%2C and to Streptococcus pneumoniae histidine kinase PnpS TR:Q9X4S9 (EMBL:AF118229) (422 aa) fasta scores: E(): 1.6e-21%2C 34.3%25 id in 251 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF118229;product=putative two-component sensor histidine kinase;protein_id=CAL21611.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3360894	3360953	.	+	.	ID=id7176;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3361608	3361676	.	+	.	ID=id7177;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3361743	3362372	.	+	.	ID=id7178;Note=Pfam match to entry PF00512 signal%2C Histidine kinase%2C score 197.40%2C E-value 2.3e-55;gbkey=misc_feature;inference=protein motif:PF00512
AL590842.1	EMBL	gene	3362417	3363124	.	+	.	ID=gene2964;Name=YPO3009;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3009
AL590842.1	EMBL	CDS	3362417	3363124	.	+	0	ID=cds2921;Parent=gene2964;Dbxref=GOA:Q0WCQ7,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:Q0WCQ7,NCBI_GP:CAL21612.1;Name=CAL21612.1;Note=Similar to Streptococcus pneumoniae response regulator Rr02 TR:Q9S1K0 (EMBL:AJ006392) (234 aa) fasta scores: E(): 0%2C 41.5%25 id in 234 aa%2C and to to Bacillus subtilis alkaline phosphatase synthesis transcriptional regulatory protein PhoP SW:PHOP_BACSU (P13792) (240 aa) fasta scores: E(): 0%2C 43.7%25 id in 231 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ006392;product=putative two-component response regulator;protein_id=CAL21612.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3362417	3362752	.	+	.	ID=id7179;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 133.30%2C E-value 4.3e-36;gbkey=misc_feature;inference=protein motif:PF00072
AL590842.1	EMBL	sequence_feature	3362867	3363085	.	+	.	ID=id7180;Note=Pfam match to entry PF00486 trans_reg_C%2CTranscriptional regulatory protein%2C C terminal%2C score 91.80%2C E-value 3.7e-26;gbkey=misc_feature;inference=protein motif:PF00486
AL590842.1	EMBL	gene	3363505	3364737	.	-	.	ID=gene2965;Name=YPO3010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3010
AL590842.1	EMBL	CDS	3363505	3364737	.	-	0	ID=cds2922;Parent=gene2965;Dbxref=UniProtKB/TrEMBL:Q7CJG8,NCBI_GP:CAL21613.1;Name=CAL21613.1;Note=Weakly similar to the N-terminal and central regions of the previously sequenced Yersinia pestis outer membrane protein YopM or Yop48 SW:YOPM_YERPE (P17778) (367 aa) fasta scores: E(): 0.00012%2C 29.9%25 id in 177 aa%2C and to phage Gifsy-1 leucine-rich repeat protein GogB TR:Q9MBM1 (EMBL:AF254761) (489 aa) fasta scores: E(): 1.4e-19%2C 36.9%25 id in 360 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF254761;product=hypothetical protein;protein_id=CAL21613.1;transl_table=11
AL590842.1	EMBL	gene	3364982	3365860	.	-	.	ID=gene2966;Name=cysM;gbkey=Gene;gene=cysM;gene_biotype=protein_coding;locus_tag=YPO3011
AL590842.1	EMBL	CDS	3364982	3365860	.	-	0	ID=cds2923;Parent=gene2966;Dbxref=GOA:Q7CJG9,InterPro:IPR001216,InterPro:IPR001926,InterPro:IPR005856,InterPro:IPR005858,UniProtKB/TrEMBL:Q7CJG9,NCBI_GP:CAL21614.1;Name=CAL21614.1;Note=Similar to Escherichia coli cysteine synthase B CysM SW:CYSM_ECOLI (P16703) (303 aa) fasta scores: E(): 0%2C 76.0%25 id in 292 aa%2C and to Salmonella typhimurium cysteine synthase B CysM SW:CYSM_SALTY (P29848) (303 aa) fasta scores: E(): 0%2C 76.7%25 id in 292 aa. Similar to YPO2992 (43.6%25 identity in 303 aa overlap);gbkey=CDS;gene=cysM;product=cysteine synthase B;protein_id=CAL21614.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3365015	3365851	.	-	.	ID=id7181;Note=Pfam match to entry PF00291 PALP%2CPyridoxal-phosphate dependent enzyme%2C score 369.20%2C E-value 4.3e-107;gbkey=misc_feature;gene=cysM;inference=protein motif:PF00291
AL590842.1	EMBL	sequence_feature	3365717	3365773	.	-	.	ID=id7182;Note=PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site.;gbkey=misc_feature;gene=cysM;inference=protein motif:ProSite:PS00901
AL590842.1	EMBL	gene	3366031	3367122	.	-	.	ID=gene2967;Name=cysA;gbkey=Gene;gene=cysA;gene_biotype=protein_coding;locus_tag=YPO3012
AL590842.1	EMBL	CDS	3366031	3367122	.	-	0	ID=cds2924;Parent=gene2967;Dbxref=GOA:Q8D0W8,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR005666,InterPro:IPR008995,InterPro:IPR014769,InterPro:IPR017871,InterPro:IPR024765,InterPro:IPR027417,NCBI_GP:CAL21615.1;Name=CAL21615.1;Note=Similar to Escherichia coli sulfate transport ATP-binding protein CysA SW:CYSA_ECOLI (P16676) (365 aa) fasta scores: E(): 0%2C 77.4%25 id in 367 aa%2C and to Vibrio cholerae sulfate ABC transporter%2C ATP-binding protein Vc0541 TR:Q9KUI0 (EMBL:AE004140) (376 aa) fasta scores: E(): 0%2C 55.8%25 id in 321 aa;gbkey=CDS;gene=cysA;inference=similar to sequence:INSDC:AE004140;product=sulfate transport ATP-binding protein;protein_id=CAL21615.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3366484	3367041	.	-	.	ID=id7183;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 239.90%2C E-value 3.7e-68;gbkey=misc_feature;gene=cysA;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	3366670	3366714	.	-	.	ID=id7184;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=cysA;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	3366997	3367020	.	-	.	ID=id7185;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=cysA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3367112	3367987	.	-	.	ID=gene2968;Name=cysW;gbkey=Gene;gene=cysW;gene_biotype=protein_coding;locus_tag=YPO3013
AL590842.1	EMBL	CDS	3367112	3367987	.	-	0	ID=cds2925;Parent=gene2968;Dbxref=GOA:Q7CJH0,InterPro:IPR000515,InterPro:IPR005667,InterPro:IPR011866,UniProtKB/TrEMBL:Q7CJH0,NCBI_GP:CAL21616.1;Name=CAL21616.1;Note=Similar to Escherichia coli sulfate transport system permease protein CysW SW:CYSW_ECOLI (P16702) (291 aa) fasta scores: E(): 0%2C 78.0%25 id in 291 aa%2C and to Vibrio cholerae sulfate ABC transporter%2C permease protein Vc0540 TR:Q9KUI1 (EMBL:AE004140) (287 aa) fasta scores: E(): 0%2C 60.9%25 id in 271 aa;gbkey=CDS;gene=cysW;inference=similar to sequence:INSDC:AE004140;product=sulfate transport system permease protein CysW;protein_id=CAL21616.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3367184	3367249	.	-	.	ID=id7186;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=cysW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3367244	3367486	.	-	.	ID=id7187;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 38.90%2C E-value 1.2e-07;gbkey=misc_feature;gene=cysW;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	3367319	3367384	.	-	.	ID=id7188;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=cysW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3367397	3367483	.	-	.	ID=id7189;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;gene=cysW;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	3367502	3367558	.	-	.	ID=id7190;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=cysW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3367619	3367684	.	-	.	ID=id7191;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=cysW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3367724	3367789	.	-	.	ID=id7192;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=cysW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3367859	3367924	.	-	.	ID=id7193;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=cysW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3367987	3368820	.	-	.	ID=gene2969;Name=cysT;gbkey=Gene;gene=cysT;gene_biotype=protein_coding;locus_tag=YPO3014
AL590842.1	EMBL	CDS	3367987	3368820	.	-	0	ID=cds2926;Parent=gene2969;Dbxref=GOA:Q7CJH1,InterPro:IPR000515,InterPro:IPR005667,InterPro:IPR011865,UniProtKB/TrEMBL:Q7CJH1,NCBI_GP:CAL21617.1;Name=CAL21617.1;Note=Similar to Escherichia coli sulfate transport system permease protein CysT SW:CYST_ECOLI (P16701) (277 aa) fasta scores: E(): 0%2C 85.9%25 id in 277 aa%2C and to Vibrio cholerae sulfate ABC transporter%2C permease protein Vc0539 TR:Q9KUI2 (EMBL:AE004140) (283 aa) fasta scores: E(): 0%2C 66.3%25 id in 270 aa;gbkey=CDS;gene=cysT;inference=similar to sequence:INSDC:AE004140;product=sulfate transport system permease protein CysT;protein_id=CAL21617.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3368023	3368088	.	-	.	ID=id7194;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=cysT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3368095	3368337	.	-	.	ID=id7195;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 79.90%2C E-value 5.2e-20;gbkey=misc_feature;gene=cysT;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	3368119	3368184	.	-	.	ID=id7196;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=cysT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3368206	3368256	.	-	.	ID=id7197;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=cysT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3368248	3368334	.	-	.	ID=id7198;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;gene=cysT;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	3368341	3368406	.	-	.	ID=id7199;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=cysT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3368443	3368508	.	-	.	ID=id7200;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=cysT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3368569	3368634	.	-	.	ID=id7201;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=cysT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3368710	3368775	.	-	.	ID=id7202;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=cysT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3368820	3369857	.	-	.	ID=gene2970;Name=cysP;gbkey=Gene;gene=cysP;gene_biotype=protein_coding;locus_tag=YPO3015
AL590842.1	EMBL	CDS	3368820	3369857	.	-	0	ID=cds2927;Parent=gene2970;Dbxref=GOA:Q7CJH2,InterPro:IPR005669,UniProtKB/TrEMBL:Q7CJH2,NCBI_GP:CAL21618.1;Name=CAL21618.1;Note=Similar to Escherichia coli thiosulfate-binding protein precursor CysP SW:CYSP_ECOLI (P16700) (338 aa) fasta scores: E(): 0%2C 74.1%25 id in 343 aa%2C and to Salmonella typhimurium thiosulfate-binding protein precursor CysP SW:CYSP_SALTY (P41031) (338 aa) fasta scores: E(): 0%2C 74.5%25 id in 329 aa. Similar to YPO0079 (47.7%25 identity in 321 aa overlap);gbkey=CDS;gene=cysP;product=thiosulfate-binding protein;protein_id=CAL21618.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3368832	3369818	.	-	.	ID=id7203;Note=Pfam match to entry PF01100 Sulphate_bind%2CProkaryotic sulphate- and thiosulphate-binding protein%2Cscore 659.50%2C E-value 1.7e-194;gbkey=misc_feature;gene=cysP;inference=protein motif:PF01100
AL590842.1	EMBL	gene	3370172	3371704	.	-	.	ID=gene2971;Name=nanT;gbkey=Gene;gene=nanT;gene_biotype=protein_coding;locus_tag=YPO3016
AL590842.1	EMBL	CDS	3370172	3371704	.	-	0	ID=cds2928;Parent=gene2971;Dbxref=GOA:Q8ZCH3,InterPro:IPR004742,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,NCBI_GP:CAL21619.1;Name=CAL21619.1;Note=Similar to Escherichia coli putative sialic acid transporter NanT SW:NANT_ECOLI (P41036) (496 aa) fasta scores: E(): 0%2C 75.2%25 id in 484 aa%2C and to Escherichia coli hypothetical metabolite transport protein in leuX-fecE intergenic region YjhB SW:YJHB_ECOLI (P39352) (405 aa) fasta scores: E(): 0%2C 37.1%25 id in 455 aa;gbkey=CDS;gene=nanT;inference=protein motif:TMHMM:2.0;product=putative sugar transporter;protein_id=CAL21619.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3370268	3371608	.	-	.	ID=id7204;Note=Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporter%2C score 68.20%2C E-value 1.8e-16;gbkey=misc_feature;gene=nanT;inference=protein motif:PF00083
AL590842.1	EMBL	sequence_feature	3370298	3370363	.	-	.	ID=id7205;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=nanT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3370376	3370441	.	-	.	ID=id7206;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=nanT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3370469	3370534	.	-	.	ID=id7207;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=nanT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3370547	3370612	.	-	.	ID=id7208;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=nanT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3370649	3370705	.	-	.	ID=id7209;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=nanT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3370766	3370831	.	-	.	ID=id7210;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=nanT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3370853	3370918	.	-	.	ID=id7211;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=nanT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3370934	3370999	.	-	.	ID=id7212;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=nanT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3371096	3371152	.	-	.	ID=id7213;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=nanT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3371165	3371230	.	-	.	ID=id7214;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=nanT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3371324	3371389	.	-	.	ID=id7215;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=nanT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3371450	3371515	.	-	.	ID=id7216;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=nanT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3371537	3371602	.	-	.	ID=id7217;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=nanT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3372309	3373187	.	-	.	ID=gene2972;Name=YPO3017;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3017
AL590842.1	EMBL	CDS	3372309	3373187	.	-	0	ID=cds2929;Parent=gene2972;Dbxref=GOA:Q7CJH3,InterPro:IPR000281,InterPro:IPR001347,InterPro:IPR009057,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CJH3,NCBI_GP:CAL21620.1;Name=CAL21620.1;Note=Similar to Haemophilus influenzae hypothetical protein HI0143 SW:Y143_HAEIN (P44540) (288 aa) fasta scores: E(): 0%2C 57.9%25 id in 280 aa%2C and to Bacillus halodurans transcriptional regulator BH2675 TR:Q9K9H2 (EMBL:AP001516) (287 aa) fasta scores: E(): 5.5e-22%2C 31.2%25 id in 253 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001516;product=putative rpiR-family transcriptional regulatory protein;protein_id=CAL21620.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3372375	3372782	.	-	.	ID=id7218;Note=Pfam match to entry PF01380 SIS%2C SIS domain%2C score 128.40%2C E-value 1.3e-34;gbkey=misc_feature;inference=protein motif:PF01380
AL590842.1	EMBL	sequence_feature	3372828	3373157	.	-	.	ID=id7219;Note=Pfam match to entry PF01418 HTH_6%2C Helix-turn-helix domain%2C rpiR family%2C score 114.90%2C E-value 1.5e-30;gbkey=misc_feature;inference=protein motif:PF01418
AL590842.1	EMBL	gene	3373184	3373336	.	-	.	ID=gene2973;Name=YPO3018;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3018
AL590842.1	EMBL	CDS	3373184	3373336	.	-	0	ID=cds2930;Parent=gene2973;Dbxref=UniProtKB/TrEMBL:Q7CJH4,NCBI_GP:CAL21621.1;Name=CAL21621.1;Note=doubtful CDS with no significant database matches. Very low %25G+C;gbkey=CDS;product=hypothetical protein;protein_id=CAL21621.1;transl_table=11
AL590842.1	EMBL	gene	3373376	3373831	.	-	.	ID=gene2974;Name=YPO3019;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3019
AL590842.1	EMBL	CDS	3373376	3373831	.	-	0	ID=cds2931;Parent=gene2974;Dbxref=InterPro:IPR004375,UniProtKB/TrEMBL:Q0WCP7,NCBI_GP:CAL21622.1;Name=CAL21622.1;Note=Similar to Escherichia coli hypothetical protein YhcH SW:YHCH_ECOLI (P45424) (154 aa) fasta scores: E(): 9.6e-22%2C 47.6%25 id in 143 aa%2C and to Haemophilus influenzae hypothetical protein HI0227 SW:YHCH_HAEIN (P44583) (155 aa) fasta scores: E(): 2.1e-21%2C 48.3%25 id in 151 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21622.1;transl_table=11
AL590842.1	EMBL	gene	3373928	3374800	.	-	.	ID=gene2975;Name=YPO3020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3020
AL590842.1	EMBL	CDS	3373928	3374800	.	-	0	ID=cds2932;Parent=gene2975;Dbxref=GOA:Q8ZCG9,InterPro:IPR000600,InterPro:IPR023945,NCBI_GP:CAL21623.1;Name=CAL21623.1;Note=Similar to Streptomyces coelicolor glucokinase SW:GLK_STRCO (P40184) (317 aa) fasta scores: E(): 1.4e-18%2C31.6%25 id in 316 aa%2C and to Haemophilus influenzae hypothetical protein Hi0144 SW:YHCI_HAEIN (P44541) (300 aa) fasta scores: E(): 0%2C 52.4%25 id in 288 aa%2C and to Escherichia coli hypothetical 29.6 kDa protein in gltF-nanT intergenic region YhcI SW:YHCI_ECOLI (P45425) (291 aa) fasta scores: E(): 0%2C 51.2%25 id in 285 aa;gbkey=CDS;product=putative sugar kinase;protein_id=CAL21623.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3374252	3374785	.	-	.	ID=id7220;Note=Pfam match to entry PF00480 ROK%2C ROK family%2C score 193.70%2C E-value 1.6e-56;gbkey=misc_feature;inference=protein motif:PF00480
AL590842.1	EMBL	sequence_feature	3374333	3374416	.	-	.	ID=id7221;Note=PS01125 ROK family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01125
AL590842.1	EMBL	pseudogene	3375069	3376197	.	+	.	ID=gene2976;Name=YPO3021;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO3021;pseudo=true
AL590842.1	EMBL	CDS	3375069	3376197	.	+	0	ID=cds2933;Parent=gene2976;Note=Similar (after the first 34 N-terminal aa) to the previously sequenced Yersinia pestis outer membrane protein YopM or Yop48 SW:YOPM_YERPE (P17778) (367 aa) fasta scores: E(): 3.9e-25%2C 37.5%25 id in 339 aa%2C and to Yersinia enterocolitica YopM protein TR:P74988 (EMBL:AF102990) (367 aa) fasta scores: E(): 8.2e-26%2C 37.2%25 id in 339 aa. There is a possible frameshift following codon 188. The frameshift occurs at a homopolymeric tract of 8C. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=similar to sequence:INSDC:AF102990;product=putative outer membrane protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	3375258	3375326	.	+	.	ID=id7222;Note=Pfam match to entry PF00560 LRR%2C Leucine Rich Repeat%2C score 14.40%2C E-value 2.8;gbkey=misc_feature;inference=protein motif:PF00560
AL590842.1	EMBL	sequence_feature	3375378	3375443	.	+	.	ID=id7223;Note=Pfam match to entry PF00560 LRR%2C Leucine Rich Repeat%2C score 16.20%2C E-value 0.79;gbkey=misc_feature;inference=protein motif:PF00560
AL590842.1	EMBL	sequence_feature	3375447	3375512	.	+	.	ID=id7224;Note=Pfam match to entry PF00560 LRR%2C Leucine Rich Repeat%2C score 16.30%2C E-value 0.71;gbkey=misc_feature;inference=protein motif:PF00560
AL590842.1	EMBL	sequence_feature	3375516	3375581	.	+	.	ID=id7225;Note=Pfam match to entry PF00560 LRR%2C Leucine Rich Repeat%2C score 17.80%2C E-value 0.26;gbkey=misc_feature;inference=protein motif:PF00560
AL590842.1	EMBL	gene	3376403	3377104	.	+	.	ID=gene2977;Name=YPO3023;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3023
AL590842.1	EMBL	CDS	3376403	3377104	.	+	0	ID=cds2934;Parent=gene2977;Dbxref=GOA:Q8ZCG8,InterPro:IPR007260,InterPro:IPR011060,InterPro:IPR013785,NCBI_GP:CAL21625.1;Name=CAL21625.1;Note=Similar to Escherichia coli hypothetical 24.1 kDa protein in gltF-nanT intergenic region YhcJ SW:YHCJ_ECOLI (P45426) (229 aa) fasta scores: E(): 0%2C 59.7%25 id in 226 aa%2Cand to Pasteurella multocida conserved hypothetical protein YhcJ TR:Q9L6B4 (EMBL:AF237924) (228 aa) fasta scores: E(): 0%2C 58.2%25 id in 225 aa. It is also similar to the N-terminal region of Streptomyces thermoviolaceus beta-N-acetylglucosaminidase precursor NagA TR:O82840 (EMBL:AB008771) (632 aa) fasta scores: E(): 0.86%2C 25.1%25 id in 207 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF237924;product=conserved hypothetical protein;protein_id=CAL21625.1;transl_table=11
AL590842.1	EMBL	gene	3377167	3378060	.	+	.	ID=gene2978;Name=nanA;gbkey=Gene;gene=nanA;gene_biotype=protein_coding;gene_synonym=npl;locus_tag=YPO3024
AL590842.1	EMBL	CDS	3377167	3378060	.	+	0	ID=cds2935;Parent=gene2978;Dbxref=GOA:Q0WCP4,InterPro:IPR002220,InterPro:IPR013785,InterPro:IPR020624,UniProtKB/TrEMBL:Q0WCP4,NCBI_GP:CAL21626.1;Name=CAL21626.1;Note=Similar to Escherichia coli N-acetylneuraminate lyase subunit NanA or Npl SW:NPL_ECOLI (P06995) (296 aa) fasta scores: E(): 1.7e-16%2C 29.1%25 id in 265 aa%2C and to Vibrio cholerae N-acetylneuraminate lyase%2C putative VC1776 TR:Q9KR67 (EMBL:AE004255) (298 aa) fasta scores: E(): 0%2C75.1%25 id in 293 aa;gbkey=CDS;gene=nanA;inference=similar to sequence:INSDC:AE004255;product=probable N-acetylneuraminate lyase;protein_id=CAL21626.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3377236	3378000	.	+	.	ID=id7226;Note=Pfam match to entry PF00701 DHDPS%2CDihydrodipicolinate synthetase family%2C score 87.30%2C E-value 3.1e-22;gbkey=misc_feature;gene=nanA;inference=protein motif:PF00701
AL590842.1	EMBL	sequence_feature	3377284	3377337	.	+	.	ID=id7227;Note=PS00665 Dihydrodipicolinate synthetase signature 1.;gbkey=misc_feature;gene=nanA;inference=protein motif:ProSite:PS00665
AL590842.1	EMBL	gene	3378158	3379057	.	-	.	ID=gene2979;Name=YPO3025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3025
AL590842.1	EMBL	CDS	3378158	3379057	.	-	0	ID=cds2936;Parent=gene2979;Dbxref=GOA:Q0WCP3,InterPro:IPR006314,InterPro:IPR011008,UniProtKB/TrEMBL:Q0WCP3,NCBI_GP:CAL21627.1;Name=CAL21627.1;Note=Similar to Escherichia coli hypothetical protein B2431 TR:P76536 (EMBL:AE000330) (308 aa) fasta scores: E(): 0%2C 66.7%25 id in 300 aa%2C and to Pasteurella multocida hypothetical protein PM0455 TR:AAK02539 (EMBL:AE006081) (296 aa) fasta scores: E(): 0%2C 65.0%25 id in 297 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE006081;product=conserved hypothetical protein;protein_id=CAL21627.1;transl_table=11
AL590842.1	EMBL	gene	3379235	3379846	.	-	.	ID=gene2980;Name=yfeY;gbkey=Gene;gene=yfeY;gene_biotype=protein_coding;locus_tag=YPO3026
AL590842.1	EMBL	CDS	3379235	3379846	.	-	0	ID=cds2937;Parent=gene2980;Dbxref=InterPro:IPR010938,UniProtKB/TrEMBL:Q7CJH5,NCBI_GP:CAL21628.1;Name=CAL21628.1;Note=Similar to Escherichia coli hypothetical 20.9 kDa protein in ucpA-amiA intergenic region precursor YfeY SW:YFEY_ECOLI (P76537) (191 aa) fasta scores: E(): 0%2C 56.5%25 id in 193 aa%2C and to Aeromonas hydrophila blr regulon signal sensor BlrB TR:Q9KGR6 (EMBL:AJ276632) (473 aa) fasta scores: E(): 0.65%2C 28.8%25 id in 163 aa;gbkey=CDS;gene=yfeY;inference=similar to sequence:INSDC:AJ276632;product=putative lipoprotein;protein_id=CAL21628.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3379775	3379807	.	-	.	ID=id7228;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=yfeY;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	3380205	3380618	.	+	.	ID=gene2981;Name=ygiW;gbkey=Gene;gene=ygiW;gene_biotype=protein_coding;locus_tag=YPO3027
AL590842.1	EMBL	CDS	3380205	3380618	.	+	0	ID=cds2938;Parent=gene2981;Dbxref=InterPro:IPR005220,InterPro:IPR016052,UniProtKB/TrEMBL:Q7CJH6,NCBI_GP:CAL21629.1;Name=CAL21629.1;Note=Similar to Escherichia coli protein YgiW precursor SW:YGIW_ECOLI (P52083) (130 aa) fasta scores: E(): 3.2e-24%2C52.9%25 id in 136 aa%2C and to Bacteriophage 933W%2C and Bacteriophage VT2-Sa hypothetical 12.4 kDa protein l0136 TR:Q9XJM3 (EMBL:AF125520) (114 aa) fasta scores: E(): 7.5e-16%2C 51.0%25 id in 96 aa;gbkey=CDS;gene=ygiW;inference=similar to sequence:INSDC:AF125520;product=putative exported protein;protein_id=CAL21629.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3380409	3380612	.	+	.	ID=id7229;Note=Pfam match to entry PF01336 tRNA_anti%2C tRNA synthetase anti-codon binding domain%2C score 7.80%2C E-value 1.5;gbkey=misc_feature;gene=ygiW;inference=protein motif:PF01336
AL590842.1	EMBL	gene	3381105	3383384	.	+	.	ID=gene2982;Name=YPO3028;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3028
AL590842.1	EMBL	CDS	3381105	3383384	.	+	0	ID=cds2939;Parent=gene2982;Dbxref=GOA:Q7CJH7,InterPro:IPR003991,InterPro:IPR004899,InterPro:IPR005546,InterPro:IPR006315,InterPro:IPR011050,InterPro:IPR012332,UniProtKB/TrEMBL:Q7CJH7,NCBI_GP:CAL21630.1;Name=CAL21630.1;Note=Similar to Escherichia coli TibA TR:Q9XD84 (EMBL:AF109215) (989 aa) fasta scores: E(): 0%2C 32.8%25 id in 798 aa%2C and to Yersinia pestis putative autotransporter protein YapC TR:CAC14222 (EMBL:AJ277626) (638 aa) fasta scores: E(): 0%2C 38.9%25 id in 455 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ277626;product=putative autotransporter;protein_id=CAL21630.1;transl_table=11
AL590842.1	EMBL	gene	3383476	3383892	.	-	.	ID=gene2983;Name=YPO3029;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3029
AL590842.1	EMBL	CDS	3383476	3383892	.	-	0	ID=cds2940;Parent=gene2983;Dbxref=UniProtKB/TrEMBL:Q7CJH8,NCBI_GP:CAL21631.1;Name=CAL21631.1;Note=Similar to the internal regions of Methanococcus jannaschii hypothetical protein Mj0456 mj0456 SW:Y456_METJA (Q57898) (352 aa) fasta scores: E(): 0.48%2C 29.1%25 id in 117 aa%2C and to Bacillus halodurans Bh2100 protein Bh2100 TR:Q9KB35 (EMBL:AP001514) (366 aa) fasta scores: E(): 0.42%2C28.8%25 id in 125 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001514;product=putative membrane protein;protein_id=CAL21631.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3383488	3383538	.	-	.	ID=id7230;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3383551	3383616	.	-	.	ID=id7231;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3383680	3383745	.	-	.	ID=id7232;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3383806	3383871	.	-	.	ID=id7233;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3383998	3384183	.	+	.	ID=gene2984;Name=YPO3030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3030
AL590842.1	EMBL	CDS	3383998	3384183	.	+	0	ID=cds2941;Parent=gene2984;Dbxref=UniProtKB/TrEMBL:Q74SF6,NCBI_GP:CAL21632.1;Name=CAL21632.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21632.1;transl_table=11
AL590842.1	EMBL	gene	3384365	3384790	.	-	.	ID=gene2985;Name=YPO3031;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3031
AL590842.1	EMBL	CDS	3384365	3384790	.	-	0	ID=cds2942;Parent=gene2985;Dbxref=GOA:Q8ZCG0,InterPro:IPR000182,InterPro:IPR016181,InterPro:IPR023072,NCBI_GP:CAL21633.1;Name=CAL21633.1;Note=Similar to Campylobacter jejuni streptothricin acetyltransferase homolog Sat TR:Q9RGZ9 (EMBL:AF093219) (148 aa) fasta scores: E(): 1.5e-08%2C 33.6%25 id in 116 aa%2Cand to Escherichia coli hypothetical protein TR:P76539 (EMBL:AE000330) (178 aa) fasta scores: E(): 0%2C 78.0%25 id in 141 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF093219;product=putative acetyltransferase;protein_id=CAL21633.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3384419	3384643	.	-	.	ID=id7234;Note=Pfam match to entry PF00583 Acetyltransf%2CAcetyltransferase (GNAT) family%2C score 70.00%2C E-value 5.1e-17;gbkey=misc_feature;inference=protein motif:PF00583
AL590842.1	EMBL	gene	3385073	3386002	.	+	.	ID=gene2986;Name=hemF;gbkey=Gene;gene=hemF;gene_biotype=protein_coding;locus_tag=YPO3032
AL590842.1	EMBL	CDS	3385073	3386002	.	+	0	ID=cds2943;Parent=gene2986;Dbxref=GOA:Q8ZCF9,InterPro:IPR001260,InterPro:IPR018375,NCBI_GP:CAL21634.1;Name=CAL21634.1;Note=Similar to Escherichia coli coproporphyrinogen III oxidase%2C aerobic HemF SW:HEM6_ECOLI (P36553) (299 aa) fasta scores: E(): 0%2C 75.6%25 id in 299 aa%2C and to Salmonella typhimurium coproporphyrinogen III oxidase%2C aerobic HemF SW:HEM6_SALTY (P33771) (299 aa) fasta scores: E(): 0%2C 75.3%25 id in 299 aa;gbkey=CDS;gene=hemF;product=coproporphyrinogen III oxidase%2C aerobic HemF;protein_id=CAL21634.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3385076	3385978	.	+	.	ID=id7235;Note=Pfam match to entry PF01218 Coprogen_oxidas%2CCoproporphyrinogen III oxidase%2C score 705.90%2C E-value 2.6e-258;gbkey=misc_feature;gene=hemF;inference=protein motif:PF01218
AL590842.1	EMBL	sequence_feature	3385568	3385642	.	+	.	ID=id7236;Note=PS01021 Coproporphyrinogen III oxidase signature.;gbkey=misc_feature;gene=hemF;inference=protein motif:ProSite:PS01021
AL590842.1	EMBL	gene	3386002	3386460	.	+	.	ID=gene2987;Name=YPO3033;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3033
AL590842.1	EMBL	CDS	3386002	3386460	.	+	0	ID=cds2944;Parent=gene2987;Dbxref=InterPro:IPR003791,NCBI_GP:CAL21635.1;Name=CAL21635.1;Note=Similar to Escherichia coli hypothetical protein YaiI SW:YAII_ECOLI (P52088) (152 aa) fasta scores: E(): 0%2C74.2%25 id in 151 aa%2C and to Vibrio cholerae hypothetical protein VC0881 TR:Q9KTM1 (EMBL:AE004172) (149 aa) fasta scores: E(): 0%2C 67.1%25 id in 146 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004172;product=conserved hypothetical protein;protein_id=CAL21635.1;transl_table=11
AL590842.1	EMBL	gene	3386611	3388896	.	-	.	ID=gene2988;Name=maeB;gbkey=Gene;gene=maeB;gene_biotype=protein_coding;locus_tag=YPO3034
AL590842.1	EMBL	CDS	3386611	3388896	.	-	0	ID=cds2945;Parent=gene2988;Dbxref=GOA:Q0WCN4,InterPro:IPR002505,InterPro:IPR012188,InterPro:IPR012301,InterPro:IPR012302,InterPro:IPR015884,InterPro:IPR016040,UniProtKB/TrEMBL:Q0WCN4,NCBI_GP:CAL21636.1;Name=CAL21636.1;Note=Similar to Escherichia coli NADP-dependent malic enzyme MaeB SW:MAO2_ECOLI (P76558) (759 aa) fasta scores: E(): 0%2C 83.9%25 id in 758 aa%2C and to Haemophilus influenzae NADP-dependent malic enzyme MaeB or Hi1245 SW:MAO2_HAEIN (P43837) (756 aa) fasta scores: E(): 0%2C 68.9%25 id in 756 aa;gbkey=CDS;gene=maeB;product=NADP-dependent malic enzyme;protein_id=CAL21636.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3386638	3387612	.	-	.	ID=id7237;Note=Pfam match to entry PF01515 PTA_PTB%2C Phosphate acetyl/butaryl transferase%2C score 401.30%2C E-value 9.1e-117;gbkey=misc_feature;gene=maeB;inference=protein motif:PF01515
AL590842.1	EMBL	sequence_feature	3387292	3387357	.	-	.	ID=id7238;Note=Predicted helix-turn-helix motif with score 1150 (+3.10 SD) at aa 514-535%2C sequence HEYYQIMKRRGVSQEQARRAVI;gbkey=misc_feature;gene=maeB
AL590842.1	EMBL	gene	3389092	3389688	.	-	.	ID=gene2989;Name=YPO3035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3035
AL590842.1	EMBL	CDS	3389092	3389688	.	-	0	ID=cds2946;Parent=gene2989;Dbxref=GOA:Q74SF4,InterPro:IPR000086,InterPro:IPR004385,InterPro:IPR015797,NCBI_GP:CAL21637.1;Name=CAL21637.1;Note=Similar to Escherichia coli hypothetical protein YffH SW:YFFH_ECOLI (P37128) (191 aa) fasta scores: E(): 0%2C61.1%25 id in 185 aa%2C and to Streptomyces coelicolor hypothetical protein SCF85.08c TR:Q9S2D3 (EMBL:AL110470) (233 aa) fasta scores: E(): 6.1e-32%2C 51.6%25 id in 184 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL110470;product=conserved hypothetical protein;protein_id=CAL21637.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3389137	3389559	.	-	.	ID=id7239;Note=Pfam match to entry PF00293 mutT%2C Bacterial mutT protein%2C score 73.70%2C E-value 3.9e-18;gbkey=misc_feature;inference=protein motif:PF00293
AL590842.1	EMBL	sequence_feature	3389158	3389181	.	-	.	ID=id7240;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3389872	3390474	.	-	.	ID=gene2990;Name=napC;gbkey=Gene;gene=napC;gene_biotype=protein_coding;locus_tag=YPO3036
AL590842.1	EMBL	CDS	3389872	3390474	.	-	0	ID=cds2947;Parent=gene2990;Dbxref=GOA:Q0WCN2,InterPro:IPR005126,InterPro:IPR011031,InterPro:IPR011885,InterPro:IPR024717,UniProtKB/TrEMBL:Q0WCN2,NCBI_GP:CAL21638.1;Name=CAL21638.1;Note=Similar to Escherichia coli cytochrome C-type protein NapC SW:NAPC_ECOLI (P33932) (200 aa) fasta scores: E(): 0%2C 75.5%25 id in 200 aa%2C and to Haemophilus influenzae cytochrome C-type protein NapC or hi0348 SW:NAPC_HAEIN (P44655) (200 aa) fasta scores: E(): 0%2C 61.8%25 id in 199 aa;gbkey=CDS;gene=napC;product=cytochrome C-type protein NapC;protein_id=CAL21638.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3389923	3389940	.	-	.	ID=id7241;Note=PS00190 Cytochrome c family heme-binding site signature.;gbkey=misc_feature;gene=napC;inference=protein motif:ProSite:PS00190
AL590842.1	EMBL	sequence_feature	3390019	3390036	.	-	.	ID=id7242;Note=PS00190 Cytochrome c family heme-binding site signature.;gbkey=misc_feature;gene=napC;inference=protein motif:ProSite:PS00190
AL590842.1	EMBL	sequence_feature	3390289	3390306	.	-	.	ID=id7243;Note=PS00190 Cytochrome c family heme-binding site signature.;gbkey=misc_feature;gene=napC;inference=protein motif:ProSite:PS00190
AL590842.1	EMBL	gene	3390499	3390954	.	-	.	ID=gene2991;Name=napB;gbkey=Gene;gene=napB;gene_biotype=protein_coding;locus_tag=YPO3037
AL590842.1	EMBL	CDS	3390499	3390954	.	-	0	ID=cds2948;Parent=gene2991;Dbxref=GOA:Q7CJH9,InterPro:IPR005591,InterPro:IPR027406,UniProtKB/TrEMBL:Q7CJH9,NCBI_GP:CAL21639.1;Name=CAL21639.1;Note=Similar to Escherichia coli cytochrome C-type protein NapB precursor SW:NAPB_ECOLI (P33933) (149 aa) fasta scores: E(): 0%2C 66.7%25 id in 147 aa%2C and to Haemophilus influenzae cytochrome C-type protein NapB or Hi0347 SW:NAPB_HAEIN (P44654) (150 aa) fasta scores: E(): 3.8e-24%2C 50.0%25 id in 152 aa;gbkey=CDS;gene=napB;product=cytochrome C-type protein NapB precursor;protein_id=CAL21639.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3390565	3390582	.	-	.	ID=id7244;Note=PS00190 Cytochrome c family heme-binding site signature.;gbkey=misc_feature;gene=napB;inference=protein motif:ProSite:PS00190
AL590842.1	EMBL	sequence_feature	3390685	3390702	.	-	.	ID=id7245;Note=PS00190 Cytochrome c family heme-binding site signature.;gbkey=misc_feature;gene=napB;inference=protein motif:ProSite:PS00190
AL590842.1	EMBL	gene	3391049	3393541	.	-	.	ID=gene2992;Name=napA;gbkey=Gene;gene=napA;gene_biotype=protein_coding;locus_tag=YPO3038
AL590842.1	EMBL	CDS	3391049	3393541	.	-	0	ID=cds2949;Parent=gene2992;Dbxref=GOA:Q8ZCF3,InterPro:IPR006311,InterPro:IPR006656,InterPro:IPR006657,InterPro:IPR006963,InterPro:IPR009010,InterPro:IPR010051,InterPro:IPR019546,InterPro:IPR027467,NCBI_GP:CAL21640.1;Name=CAL21640.1;Note=Similar to Escherichia coli periplasmic nitrate reductase NapA precursor SW:NAPA_ECOLI (P33937) (828 aa) fasta scores: E(): 0%2C 82.6%25 id in 828 aa%2C and to Vibrio cholerae periplasmic nitrate reductase Vca0678 TR:Q9KLR4 (EMBL:AE004397) (829 aa) fasta scores: E(): 0%2C 70.0%25 id in 830 aa;gbkey=CDS;gene=napA;inference=similar to sequence:INSDC:AE004397;product=periplasmic nitrate reductase precursor;protein_id=CAL21640.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3391076	3391402	.	-	.	ID=id7246;Note=Pfam match to entry PF01568 Molydop_binding%2CMolydopterin dinucleotide binding domain%2C score 151.40%2CE-value 1.5e-41;gbkey=misc_feature;gene=napA;inference=protein motif:PF01568
AL590842.1	EMBL	sequence_feature	3391844	3392032	.	-	.	ID=id7247;Note=Pfam match to entry PF00384 molybdopterin%2CProkaryotic molybdopterin oxidoreductases%2C score 92.90%2CE-value 2.5e-29;gbkey=misc_feature;gene=napA;inference=protein motif:PF00384
AL590842.1	EMBL	sequence_feature	3393359	3393412	.	-	.	ID=id7248;Note=PS00551 Prokaryotic molybdopterin oxidoreductases signature 1.;gbkey=misc_feature;gene=napA;inference=protein motif:ProSite:PS00551
AL590842.1	EMBL	gene	3393538	3393804	.	-	.	ID=gene2993;Name=napD;gbkey=Gene;gene=napD;gene_biotype=protein_coding;locus_tag=YPO3039
AL590842.1	EMBL	CDS	3393538	3393804	.	-	0	ID=cds2950;Parent=gene2993;Dbxref=InterPro:IPR005623,UniProtKB/TrEMBL:Q0WCM9,NCBI_GP:CAL21641.1;Name=CAL21641.1;Note=Similar to Paracoccus denitrificans periplasmic nitrate reductase-associated protein NapD SW:NAPD_PARDT (Q56349) (112 aa) fasta scores: E(): 0.027%2C 27.4%25 id in 73 aa%2C and to Escherichia coli hypothetical protein NapD SW:NAPD_ECOLI (P33938) (87 aa) fasta scores: E(): 3.4e-16%2C55.4%25 id in 83 aa;gbkey=CDS;gene=napD;product=conserved hypothetical protein;protein_id=CAL21641.1;transl_table=11
AL590842.1	EMBL	gene	3393794	3394297	.	-	.	ID=gene2994;Name=napF;gbkey=Gene;gene=napF;gene_biotype=protein_coding;locus_tag=YPO3040
AL590842.1	EMBL	CDS	3393794	3394297	.	-	0	ID=cds2951;Parent=gene2994;Dbxref=GOA:Q7CJI0,InterPro:IPR001450,InterPro:IPR004496,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:Q7CJI0,NCBI_GP:CAL21642.1;Name=CAL21642.1;Note=Similar to Escherichia coli ferredoxin-type protein NapF SW:NAPF_ECOLI (P33939) (164 aa) fasta scores: E(): 0%2C52.9%25 id in 157 aa%2C and to Vibrio cholerae iron-sulfur cluster-binding protein NapF Vca0676 TR:Q9KLR6 (EMBL:AE004397) (168 aa) fasta scores: E(): 3.7e-27%2C 40.9%25 id in 164 aa;gbkey=CDS;gene=napF;inference=similar to sequence:INSDC:AE004397;product=ferredoxin-type protein NapF;protein_id=CAL21642.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3393821	3393892	.	-	.	ID=id7249;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 25.90%2C E-value 0.00024;gbkey=misc_feature;gene=napF;inference=protein motif:PF00037
AL590842.1	EMBL	sequence_feature	3393836	3393871	.	-	.	ID=id7250;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;gene=napF;inference=protein motif:ProSite:PS00198
AL590842.1	EMBL	sequence_feature	3394037	3394108	.	-	.	ID=id7251;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 13.70%2C E-value 0.02;gbkey=misc_feature;gene=napF;inference=protein motif:PF00037
AL590842.1	EMBL	sequence_feature	3394052	3394087	.	-	.	ID=id7252;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;gene=napF;inference=protein motif:ProSite:PS00198
AL590842.1	EMBL	sequence_feature	3394133	3394201	.	-	.	ID=id7253;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 12.10%2C E-value 0.035;gbkey=misc_feature;gene=napF;inference=protein motif:PF00037
AL590842.1	EMBL	sequence_feature	3394148	3394183	.	-	.	ID=id7254;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;gene=napF;inference=protein motif:ProSite:PS00198
AL590842.1	EMBL	gene	3395130	3395759	.	+	.	ID=gene2995;Name=narP;gbkey=Gene;gene=narP;gene_biotype=protein_coding;locus_tag=YPO3041
AL590842.1	EMBL	CDS	3395130	3395759	.	+	0	ID=cds2952;Parent=gene2995;Dbxref=GOA:Q0WCM7,InterPro:IPR000792,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:Q0WCM7,NCBI_GP:CAL21643.1;Name=CAL21643.1;Note=Similar to Escherichia coli nitrate/nitrite response regulator protein NarP SW:NARP_ECOLI (P31802) (215 aa) fasta scores: E(): 0%2C 67.6%25 id in 204 aa%2C and to Pasteurella multocida NarP TR:AAK03894 (EMBL:AE006218) (209 aa) fasta scores: E(): 0%2C 62.3%25 id in 207 aa;gbkey=CDS;gene=narP;inference=similar to sequence:INSDC:AE006218;product=nitrate/nitrite response regulator protein NarP;protein_id=CAL21643.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3395142	3395483	.	+	.	ID=id7255;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 136.50%2C E-value 4.8e-37;gbkey=misc_feature;gene=narP;inference=protein motif:PF00072
AL590842.1	EMBL	sequence_feature	3395565	3395756	.	+	.	ID=id7256;Note=Pfam match to entry PF00196 GerE%2C Bacterial regulatory proteins%2C luxR family%2C score 83.50%2C E-value 4.3e-21;gbkey=misc_feature;gene=narP;inference=protein motif:PF00196
AL590842.1	EMBL	sequence_feature	3395616	3395699	.	+	.	ID=id7257;Note=PS00622 Bacterial regulatory proteins%2C luxR family signature.;gbkey=misc_feature;gene=narP;inference=protein motif:ProSite:PS00622
AL590842.1	EMBL	sequence_feature	3395619	3395684	.	+	.	ID=id7258;Note=Predicted helix-turn-helix motif with score 1864 (+5.54 SD) at aa 175-196%2C sequence MSNKQVAFELHISEETVKVHIR;gbkey=misc_feature;gene=narP
AL590842.1	EMBL	gene	3395772	3396050	.	-	.	ID=gene2996;Name=YPO3042;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3042
AL590842.1	EMBL	CDS	3395772	3396050	.	-	0	ID=cds2953;Parent=gene2996;Dbxref=InterPro:IPR017162,UniProtKB/TrEMBL:Q7CJI1,NCBI_GP:CAL21644.1;Name=CAL21644.1;Note=Similar to Vibrio cholerae hypothetical protein VC2149 TR:Q9KQ55 (EMBL:AE004287) (95 aa) fasta scores: E(): 1e-21%2C 58.2%25 id in 91 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA2029 TR:AAG05417 (EMBL:AE004629) (99 aa) fasta scores: E(): 1.2e-10%2C 43.7%25 id in 87 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004629;product=conserved hypothetical protein;protein_id=CAL21644.1;transl_table=11
AL590842.1	EMBL	gene	3396465	3399596	.	+	.	ID=gene2997;Name=YPO3043;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3043
AL590842.1	EMBL	CDS	3396465	3399596	.	+	0	ID=cds2954;Parent=gene2997;Dbxref=GOA:Q7CJI2,InterPro:IPR001036,InterPro:IPR004764,InterPro:IPR027463,UniProtKB/TrEMBL:Q7CJI2,NCBI_GP:CAL21645.1;Name=CAL21645.1;Note=Similar to Escherichia coli acriflavin resistance protein D AcrD SW:ACRD_ECOLI (P24177) (1037 aa) fasta scores: E(): 0%2C 79.5%25 id in 1036 aa%2C and to Escherichia coli acriflavin resistance protein B AcrB SW:ACRB_ECOLI (P31224) (1049 aa) fasta scores: E(): 0%2C 68.0%25 id in 1033 aa%2C and to Escherichia coli acriflavin resistance protein F AcrF or EnvD SW:ACRF_ECOLI (P24181) (1034 aa) fasta scores: E(): 0%2C 65.0%25 id in 1034 aa. Similar to YPO3133 (66.5%25 identity in 1032 aa overlap) and YPO3482 (58.4%25 identity in 1035 aa overlap);gbkey=CDS;inference=protein motif:TMHMM:2.0;product=multidrug efflux protein;protein_id=CAL21645.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3396465	3399545	.	+	.	ID=id7259;Note=Pfam match to entry PF00873 ACR_tran%2C AcrB/AcrD/AcrF family%2C score 1949.40%2C E-value 0;gbkey=misc_feature;inference=protein motif:PF00873
AL590842.1	EMBL	sequence_feature	3396492	3396560	.	+	.	ID=id7260;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3397482	3397541	.	+	.	ID=id7261;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3397569	3397637	.	+	.	ID=id7262;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3397782	3397850	.	+	.	ID=id7263;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3397860	3397928	.	+	.	ID=id7264;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3398085	3398153	.	+	.	ID=id7265;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3399066	3399134	.	+	.	ID=id7266;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3399153	3399221	.	+	.	ID=id7267;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3399234	3399302	.	+	.	ID=id7268;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3399378	3399446	.	+	.	ID=id7269;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3399474	3399542	.	+	.	ID=id7270;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3399827	3400411	.	+	.	ID=gene2998;Name=YPO3044;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3044
AL590842.1	EMBL	CDS	3399827	3400411	.	+	0	ID=cds2955;Parent=gene2998;Dbxref=UniProtKB/TrEMBL:Q7CJI3,NCBI_GP:CAL21646.1;Name=CAL21646.1;Note=Weakly similar to internal regions of Myrothecium roridum trichodiene synthase Tri5 SW:TRI5_MYRRO (O13489) (385 aa) fasta scores: E(): 2.1%2C 26.0%25 id in 150 aa%2C and to Arabidopsis thaliana hypothetical protein TR:BAB09824 (EMBL:AB006708) (277 aa) fasta scores: E(): 0.99%2C 32.5%25 id in 120 aa;gbkey=CDS;inference=similar to sequence:INSDC:AB006708;product=hypothetical protein;protein_id=CAL21646.1;transl_table=11
AL590842.1	EMBL	gene	3400700	3401248	.	+	.	ID=gene2999;Name=ybcI;gbkey=Gene;gene=ybcI;gene_biotype=protein_coding;locus_tag=YPO3045
AL590842.1	EMBL	CDS	3400700	3401248	.	+	0	ID=cds2956;Parent=gene2999;Dbxref=InterPro:IPR007404,UniProtKB/TrEMBL:Q7CJI4,NCBI_GP:CAL21647.1;Name=CAL21647.1;Note=Similar to Escherichia coli hypothetical 19.5 kDa protein in cysS-folD intergenic region YbcI SW:YBCI_ECOLI (P45570) (173 aa) fasta scores: E(): 0%2C 72.4%25 id in 174 aa%2Cand to Pseudomonas aeruginosa hypothetical protein PA4962 TR:AAG08347 (EMBL:AE004909) (178 aa) fasta scores: E(): 1.2e-29%2C 48.0%25 id in 177 aa;gbkey=CDS;gene=ybcI;inference=similar to sequence:INSDC:AE004909;product=putative membrane protein;protein_id=CAL21647.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3400733	3400801	.	+	.	ID=id7271;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=ybcI;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3400874	3400942	.	+	.	ID=id7272;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=ybcI;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3400961	3401020	.	+	.	ID=id7273;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=ybcI;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3401141	3401209	.	+	.	ID=id7274;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=ybcI;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3402002	3403177	.	-	.	ID=gene3000;Name=YPO3046;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3046
AL590842.1	EMBL	CDS	3402002	3403177	.	-	0	ID=cds2957;Parent=gene3000;Dbxref=GOA:Q0WCM2,InterPro:IPR007197,InterPro:IPR013785,InterPro:IPR023867,InterPro:IPR023885,UniProtKB/TrEMBL:Q0WCM2,NCBI_GP:CAL21648.1;Name=CAL21648.1;Note=Similar to Bacteroides thetaiotaomicron chondro-6-sulfatase regulatory protein ChuR SW:CHUR_BACTN (Q02550) (401 aa) fasta scores: E(): 0%2C 41.7%25 id in 386 aa%2Cand to Escherichia coli hypothetical protein YdeM SW:YDEM_ECOLI (P76134) (385 aa) fasta scores: E(): 0%2C 65.8%25 id in 383 aa%2C and to Klebsiella pneumoniae iron-sulfur modifier protein AtsB TR:Q9L4Y5 (EMBL:AF262989) (395 aa) fasta scores: E(): 1.1e-28%2C 34.5%25 id in 365 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF262989;product=putative sulfatase modifier protein;protein_id=CAL21648.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3402338	3403042	.	-	.	ID=id7275;Note=Pfam match to entry PF01444 MoaA_NifB_PqqE%2C moaA / nifB / pqqE family%2C score 2.30%2C E-value 6.5e-05;gbkey=misc_feature;inference=protein motif:PF01444
AL590842.1	EMBL	gene	3403235	3404908	.	-	.	ID=gene3001;Name=ydeN;gbkey=Gene;gene=ydeN;gene_biotype=protein_coding;locus_tag=YPO3047
AL590842.1	EMBL	CDS	3403235	3404908	.	-	0	ID=cds2958;Parent=gene3001;Dbxref=GOA:Q7CJI5,InterPro:IPR000917,InterPro:IPR017849,InterPro:IPR017850,InterPro:IPR024607,UniProtKB/TrEMBL:Q7CJI5,NCBI_GP:CAL21649.1;Name=CAL21649.1;Note=Similar to Escherichia coli putative sulfatase YdeN precursor SW:YDEN_ECOLI (P77318) (560 aa) fasta scores: E(): 0%2C 80.0%25 id in 556 aa;gbkey=CDS;gene=ydeN;product=putative sulfatase;protein_id=CAL21649.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3403415	3404737	.	-	.	ID=id7276;Note=Pfam match to entry PF00884 Sulfatase%2C Sulfatase%2Cscore 392.60%2C E-value 3.8e-114;gbkey=misc_feature;gene=ydeN;inference=protein motif:PF00884
AL590842.1	EMBL	sequence_feature	3404354	3404386	.	-	.	ID=id7277;Note=PS00149 Sulfatases signature 2.;gbkey=misc_feature;gene=ydeN;inference=protein motif:ProSite:PS00149
AL590842.1	EMBL	gene	3405386	3406456	.	-	.	ID=gene3002;Name=YPO3048;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3048
AL590842.1	EMBL	CDS	3405386	3406456	.	-	0	ID=cds2959;Parent=gene3002;Dbxref=GOA:Q0WCM0,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR008995,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WCM0,NCBI_GP:CAL21650.1;Name=CAL21650.1;Note=Similar to Streptomyces coelicolor ABC-transporter ATP-binding protein Sc10a5.28C TR:O54119 (EMBL:AL021529) (361 aa) fasta scores: E(): 0%2C 42.9%25 id in 361 aa%2C and to Deinococcus radiodurans spermidine/putrescine ABC transporter%2C ATP-binding protein Dr1302 TR:Q9RUT0 (EMBL:AE001977) (362 aa) fasta scores: E(): 0%2C 42.2%25 id in 327 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL021529;product=probable ABC-transporter%2C ATP-binding protein;protein_id=CAL21650.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3405809	3406372	.	-	.	ID=id7278;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 225.00%2C E-value 1.1e-63;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	3405995	3406039	.	-	.	ID=id7279;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	3406328	3406351	.	-	.	ID=id7280;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3406449	3408218	.	-	.	ID=gene3003;Name=YPO3049;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3049
AL590842.1	EMBL	CDS	3406449	3408218	.	-	0	ID=cds2960;Parent=gene3003;Dbxref=GOA:Q7CJI6,InterPro:IPR000515,UniProtKB/TrEMBL:Q7CJI6,NCBI_GP:CAL21651.1;Name=CAL21651.1;Note=Similar to Streptomyces coelicolor putative membrane protein sc10a5.29C TR:O54120 (EMBL:AL021529) (589 aa) fasta scores: E(): 0%2C 30.8%25 id in 574 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL021529;product=putative binding protein-dependent transport system%2C inner-membrane component;protein_id=CAL21651.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3406470	3406535	.	-	.	ID=id7281;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3406548	3406613	.	-	.	ID=id7282;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3406554	3406775	.	-	.	ID=id7283;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 27.70%2C E-value 0.00027;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	3406635	3406688	.	-	.	ID=id7284;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3406686	3406772	.	-	.	ID=id7285;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	3406782	3406838	.	-	.	ID=id7286;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3406950	3407015	.	-	.	ID=id7287;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3407061	3407126	.	-	.	ID=id7288;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3407163	3407228	.	-	.	ID=id7289;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3407244	3407309	.	-	.	ID=id7290;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3407403	3407468	.	-	.	ID=id7291;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3407484	3407708	.	-	.	ID=id7292;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 37.20%2C E-value 3.8e-07;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	3407490	3407540	.	-	.	ID=id7293;Note=PS00283 Soybean trypsin inhibitor (Kunitz) protease inhibitors family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00283
AL590842.1	EMBL	sequence_feature	3407535	3407600	.	-	.	ID=id7294;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3407619	3407705	.	-	.	ID=id7295;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	3407715	3407780	.	-	.	ID=id7296;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3407841	3407906	.	-	.	ID=id7297;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3407943	3408008	.	-	.	ID=id7298;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3408114	3408179	.	-	.	ID=id7299;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3408313	3409401	.	-	.	ID=gene3004;Name=YPO3050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3050
AL590842.1	EMBL	CDS	3408313	3409401	.	-	0	ID=cds2961;Parent=gene3004;Dbxref=UniProtKB/TrEMBL:Q0WCL8,NCBI_GP:CAL21652.1;Name=CAL21652.1;Note=Similar to Xylella fastidiosa periplasmic iron-binding protein Xf0324 TR:Q9PGH6 (EMBL:AE003885) (323 aa) fasta scores: E(): 1.2e-30%2C 32.5%25 id in 314 aa%2C and to Pseudomonas aeruginosa hypothetical protein Pa3250 TR:AAG06638 (EMBL:AE004747) (352 aa) fasta scores: E(): 2e-08%2C 26.0%25 id in 342 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004747;product=putative exported protein;protein_id=CAL21652.1;transl_table=11
AL590842.1	EMBL	gene	3409685	3410185	.	+	.	ID=gene3005;Name=YPO3051;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3051
AL590842.1	EMBL	CDS	3409685	3410185	.	+	0	ID=cds2962;Parent=gene3005;Dbxref=InterPro:IPR011990,InterPro:IPR013026,InterPro:IPR019734,UniProtKB/TrEMBL:Q7CJI7,NCBI_GP:CAL21653.1;Name=CAL21653.1;Note=Similar to Bacillus halodurans hypothetical protein BH0479 TR:Q9KFK0 (EMBL:AP001508) (164 aa) fasta scores: E(): 1.5e-15%2C 37.2%25 id in 148 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001508;product=conserved hypothetical protein;protein_id=CAL21653.1;transl_table=11
AL590842.1	EMBL	gene	3410345	3410743	.	+	.	ID=gene3006;Name=YPO3052;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3052
AL590842.1	EMBL	CDS	3410345	3410743	.	+	0	ID=cds2963;Parent=gene3006;Dbxref=InterPro:IPR006504,InterPro:IPR006660,InterPro:IPR012336,UniProtKB/TrEMBL:Q7CJI8,NCBI_GP:CAL21654.1;Name=CAL21654.1;Note=Similar to Escherichia coli protein YffB SW:YFFB_ECOLI (P24178) (118 aa) fasta scores: E(): 1.1e-29%2C69.0%25 id in 113 aa%2C and to Vibrio cholerae hypothetical protein VC2150 TR:Q9KQ54 (EMBL:AE004287) (131 aa) fasta scores: E(): 5.9e-22%2C 51.3%25 id in 115 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004287;product=conserved hypothetical protein;protein_id=CAL21654.1;transl_table=11
AL590842.1	EMBL	gene	3410745	3411872	.	+	.	ID=gene3007;Name=dapE;gbkey=Gene;gene=dapE;gene_biotype=protein_coding;gene_synonym=msgB;locus_tag=YPO3053
AL590842.1	EMBL	CDS	3410745	3411872	.	+	0	ID=cds2964;Parent=gene3007;Dbxref=GOA:Q7CJI9,InterPro:IPR001261,InterPro:IPR002933,InterPro:IPR005941,InterPro:IPR011650,NCBI_GP:CAL21655.1;Name=CAL21655.1;Note=Similar to Escherichia coli succinyl-diaminopimelate desuccinylase dape or msgB SW:DAPE_ECOLI (P24176) (375 aa) fasta scores: E(): 0%2C 81.9%25 id in 375 aa%2C and to Vibrio cholerae succinyl-diaminopimelate desuccinylase vc2152 TR:Q9KQ52 (EMBL:AE004287) (377 aa) fasta scores: E(): 0%2C69.1%25 id in 372 aa;gbkey=CDS;gene=dapE;inference=similar to sequence:INSDC:AE004287;product=succinyl-diaminopimelate desuccinylase;protein_id=CAL21655.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3410769	3411716	.	+	.	ID=id7300;Note=Pfam match to entry PF01546 Peptidase_M20%2C Peptidase family M20/M25/M40%2C score 286.00%2C E-value 4.8e-82;gbkey=misc_feature;gene=dapE;inference=protein motif:PF01546
AL590842.1	EMBL	sequence_feature	3410925	3410954	.	+	.	ID=id7301;Note=PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1.;gbkey=misc_feature;gene=dapE;inference=protein motif:ProSite:PS00758
AL590842.1	EMBL	gene	3411869	3412546	.	+	.	ID=gene3008;Name=YPO3054;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3054
AL590842.1	EMBL	CDS	3411869	3412546	.	+	0	ID=cds2965;Parent=gene3008;Dbxref=GOA:Q7CJJ0,InterPro:IPR003709,InterPro:IPR009045,UniProtKB/TrEMBL:Q7CJJ0,NCBI_GP:CAL21656.1;Name=CAL21656.1;Note=Similar to Vibrio cholerae D%2CD-carboxypeptidase-related protein VC2153 TR:Q9KQ51 (EMBL:AE004287) (249 aa) fasta scores: E(): 0%2C 45.7%25 id in 221 aa%2C and to Haemophilus influenzae hypothetical protein HI0100 SW:Y100_HAEIN (P43941) (131 aa) fasta scores: E(): 8.8e-23%2C 47.9%25 id in 121 aa%2C and to Haemophilus influenzae hypothetical protein HI0101 hi0101 SW:Y101_HAEIN (P43942) (146 aa) fasta scores: E(): 3.4e-19%2C 58.3%25 id in 103 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004287;product=putative carboxypeptidase;protein_id=CAL21656.1;transl_table=11
AL590842.1	EMBL	gene	3412614	3412808	.	+	.	ID=gene3009;Name=YPO3055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3055
AL590842.1	EMBL	CDS	3412614	3412808	.	+	0	ID=cds2966;Parent=gene3009;Dbxref=GOA:Q8ZCD6,InterPro:IPR020910,NCBI_GP:CAL21657.1;Name=CAL21657.1;Note=Similar to Escherichia coli hypothetical protein TR:P77259 (EMBL:D90875) (66 aa) fasta scores: E(): 3e-18%2C66.7%25 id in 66 aa;gbkey=CDS;inference=similar to sequence:INSDC:D90875;product=putative membrane protein;protein_id=CAL21657.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3412614	3412682	.	+	.	ID=id7302;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3413013	3415112	.	-	.	ID=gene3010;Name=YPO3056;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3056
AL590842.1	EMBL	CDS	3413013	3415112	.	-	0	ID=cds2967;Parent=gene3010;Dbxref=GOA:Q7CJJ1,InterPro:IPR000182,InterPro:IPR007807,InterPro:IPR013562,InterPro:IPR016181,InterPro:IPR024914,InterPro:IPR027417,InterPro:IPR027992,UniProtKB/TrEMBL:Q7CJJ1,NCBI_GP:CAL21658.1;Name=CAL21658.1;Note=Similar to Escherichia coli hypothetical protein YpfI SW:YPFI_ECOLI (P76562) (671 aa) fasta scores: E(): 0%2C52.4%25 id in 664 aa;gbkey=CDS;product=putative acetyltransferase;protein_id=CAL21658.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3413547	3413882	.	-	.	ID=id7303;Note=Pfam match to entry PF00583 Acetyltransf%2CAcetyltransferase (GNAT) family%2C score 27.80%2C E-value 0.00026;gbkey=misc_feature;inference=protein motif:PF00583
AL590842.1	EMBL	sequence_feature	3414498	3414521	.	-	.	ID=id7304;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3415114	3415566	.	-	.	ID=gene3011;Name=yeaL;gbkey=Gene;gene=yeaL;gene_biotype=protein_coding;locus_tag=YPO3057
AL590842.1	EMBL	CDS	3415114	3415566	.	-	0	ID=cds2968;Parent=gene3011;Dbxref=GOA:Q74SD5,InterPro:IPR007382,NCBI_GP:CAL21659.1;Name=CAL21659.1;Note=Similar to Escherichia coli hypothetical 15.3 kDa protein in gapA-rnd intergenic region YeaL SW:YEAL_ECOLI (P76240) (148 aa) fasta scores: E(): 0%2C 71.2%25 id in 146 aa%2Cand to Haemophilus influenzae hypothetical protein Hi1074 SW:YEAL_HAEIN (P44110) (150 aa) fasta scores: E(): 1.7e-24%2C51.4%25 id in 146 aa;gbkey=CDS;gene=yeaL;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL21659.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3415126	3415191	.	-	.	ID=id7305;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeaL;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3415237	3415302	.	-	.	ID=id7306;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeaL;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3415342	3415407	.	-	.	ID=id7307;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeaL;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3415453	3415545	.	-	.	ID=id7308;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=yeaL;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3415660	3416526	.	-	.	ID=gene3012;Name=YPO3058;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3058
AL590842.1	EMBL	CDS	3415660	3416526	.	-	0	ID=cds2969;Parent=gene3012;Dbxref=InterPro:IPR007343,UniProtKB/TrEMBL:Q7CJJ2,NCBI_GP:CAL21660.1;Name=CAL21660.1;Note=Similar to Escherichia coli hypothetical protein TR:P76563 (EMBL:AE000334) (287 aa) fasta scores: E(): 0%2C74.7%25 id in 289 aa%2C and to Pseudomonas aeruginosa hypothetical protein Pa4717 TR:AAG08103 (EMBL:AE004885) (297 aa) fasta scores: E(): 0%2C 52.2%25 id in 299 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004885;product=putative membrane protein;protein_id=CAL21660.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3416002	3416031	.	-	.	ID=id7309;Note=PS00142 Neutral zinc metallopeptidases%2C zinc-binding region signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00142
AL590842.1	EMBL	sequence_feature	3416362	3416427	.	-	.	ID=id7310;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3416745	3417458	.	-	.	ID=gene3013;Name=purC;gbkey=Gene;gene=purC;gene_biotype=protein_coding;locus_tag=YPO3059
AL590842.1	EMBL	CDS	3416745	3417458	.	-	0	ID=cds2970;Parent=gene3013;Dbxref=GOA:Q8ZCD2,InterPro:IPR001636,InterPro:IPR013816,InterPro:IPR018236,InterPro:IPR028923,NCBI_GP:CAL21661.1;Name=CAL21661.1;Note=Similar to Escherichia coli phosphoribosylaminoimidazole-succinocarboxamide synthase PurC SW:PUR7_ECOLI (P21155) (237 aa) fasta scores: E(): 0%2C86.9%25 id in 237 aa%2C and to Pseudomonas aeruginosa phosphoribosylaminoimidazole-succinocarboxamide synthase Purc or Pa1013 TR:AAG04402 (EMBL:AE004533) (236 aa) fasta scores: E(): 0%2C 72.5%25 id in 236 aa;gbkey=CDS;gene=purC;inference=similar to sequence:INSDC:AE004533;product=phosphoribosylaminoimidazole-succinocarboxamide synthase;protein_id=CAL21661.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3416751	3417452	.	-	.	ID=id7311;Note=Pfam match to entry PF01259 SAICAR_synt%2C SAICAR synthetase%2C score 384.30%2C E-value 1.2e-111;gbkey=misc_feature;gene=purC;inference=protein motif:PF01259
AL590842.1	EMBL	sequence_feature	3416916	3416942	.	-	.	ID=id7312;Note=PS01058 SAICAR synthetase signature 2.;gbkey=misc_feature;gene=purC;inference=protein motif:ProSite:PS01058
AL590842.1	EMBL	sequence_feature	3417159	3417203	.	-	.	ID=id7313;Note=PS01057 SAICAR synthetase signature 1.;gbkey=misc_feature;gene=purC;inference=protein motif:ProSite:PS01057
AL590842.1	EMBL	repeat_region	3417498	3418209	.	-	.	ID=id7314;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	3417606	3418064	.	-	.	ID=gene3014;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO3060
AL590842.1	EMBL	CDS	3417606	3418064	.	-	0	ID=cds2971;Parent=gene3014;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL21662.1;Name=CAL21662.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL21662.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3417699	3418010	.	-	.	ID=id7315;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	3418239	3419297	.	-	.	ID=gene3015;Name=dapX;gbkey=Gene;gene=dapX;gene_biotype=protein_coding;gene_synonym=nlpB;locus_tag=YPO3061
AL590842.1	EMBL	CDS	3418239	3419297	.	-	0	ID=cds2972;Parent=gene3015;Dbxref=GOA:Q0WCK7,InterPro:IPR010653,InterPro:IPR014524,NCBI_GP:CAL21663.1;Name=CAL21663.1;Note=Similar to Escherichia coli lipoprotein-34 precursor NlpB or DapX SW:NLPB_ECOLI (P21167) (344 aa) fasta scores: E(): 0%2C 62.9%25 id in 345 aa;gbkey=CDS;gene=dapX;product=lipoprotein;protein_id=CAL21663.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3419223	3419255	.	-	.	ID=id7316;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=dapX;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	3419315	3420196	.	-	.	ID=gene3016;Name=dapA;gbkey=Gene;gene=dapA;gene_biotype=protein_coding;locus_tag=YPO3062
AL590842.1	EMBL	CDS	3419315	3420196	.	-	0	ID=cds2973;Parent=gene3016;Dbxref=GOA:Q8ZCD0,InterPro:IPR002220,InterPro:IPR005263,InterPro:IPR013785,InterPro:IPR020624,InterPro:IPR020625,NCBI_GP:CAL21664.1;Name=CAL21664.1;Note=Similar to Escherichia coli dihydrodipicolinate synthase DapA SW:DAPA_ECOLI (P05640) (292 aa) fasta scores: E(): 0%2C 78.8%25 id in 293 aa;gbkey=CDS;gene=dapA;product=dihydrodipicolinate synthase;protein_id=CAL21664.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3419372	3420133	.	-	.	ID=id7317;Note=Pfam match to entry PF00701 DHDPS%2CDihydrodipicolinate synthetase family%2C score 462.10%2CE-value 4.6e-135;gbkey=misc_feature;gene=dapA;inference=protein motif:PF00701
AL590842.1	EMBL	sequence_feature	3419708	3419800	.	-	.	ID=id7318;Note=PS00666 Dihydrodipicolinate synthetase signature 2.;gbkey=misc_feature;gene=dapA;inference=protein motif:ProSite:PS00666
AL590842.1	EMBL	sequence_feature	3420032	3420085	.	-	.	ID=id7319;Note=PS00665 Dihydrodipicolinate synthetase signature 1.;gbkey=misc_feature;gene=dapA;inference=protein motif:ProSite:PS00665
AL590842.1	EMBL	gene	3420361	3420930	.	+	.	ID=gene3017;Name=gcvR;gbkey=Gene;gene=gcvR;gene_biotype=protein_coding;locus_tag=YPO3063
AL590842.1	EMBL	CDS	3420361	3420930	.	+	0	ID=cds2974;Parent=gene3017;Dbxref=InterPro:IPR016867,UniProtKB/TrEMBL:Q0WCK5,NCBI_GP:CAL21665.1;Name=CAL21665.1;Note=Similar to Escherichia coli glycine cleavage system transcriptional repressor GcvR SW:GCVR_ECOLI (P23483) (189 aa) fasta scores: E(): 0%2C 75.7%25 id in 181 aa;gbkey=CDS;gene=gcvR;product=glycine cleavage system transcriptional repressor;protein_id=CAL21665.1;transl_table=11
AL590842.1	EMBL	gene	3420930	3421403	.	+	.	ID=gene3018;Name=bcp;gbkey=Gene;gene=bcp;gene_biotype=protein_coding;locus_tag=YPO3064
AL590842.1	EMBL	CDS	3420930	3421403	.	+	0	ID=cds2975;Parent=gene3018;Dbxref=GOA:Q0WCK4,InterPro:IPR000866,InterPro:IPR012336,UniProtKB/TrEMBL:Q0WCK4,NCBI_GP:CAL21666.1;Name=CAL21666.1;Note=Similar to Escherichia coli bacterioferritin comigratory protein Bcp SW:BCP_ECOLI (P23480) (156 aa) fasta scores: E(): 0%2C 86.5%25 id in 156 aa%2C and to Vibrio cholerae bacterioferritin comigratory protein VC2160 TR:Q9KQ44 (EMBL:AE004288) (155 aa) fasta scores: E(): 0%2C63.2%25 id in 152 aa;gbkey=CDS;gene=bcp;inference=similar to sequence:INSDC:AE004288;product=bacterioferritin comigratory protein;protein_id=CAL21666.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3420948	3421379	.	+	.	ID=id7320;Note=Pfam match to entry PF00578 AhpC-TSA%2C AhpC/TSA family%2C score 220.80%2C E-value 2e-62;gbkey=misc_feature;gene=bcp;inference=protein motif:PF00578
AL590842.1	EMBL	gene	3421647	3422066	.	-	.	ID=gene3019;Name=YPO3065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3065
AL590842.1	EMBL	CDS	3421647	3422066	.	-	0	ID=cds2976;Parent=gene3019;Dbxref=UniProtKB/TrEMBL:Q7CJJ4,NCBI_GP:CAL21667.1;Name=CAL21667.1;Note=no significant database matches;gbkey=CDS;product=putative exported protein;protein_id=CAL21667.1;transl_table=11
AL590842.1	EMBL	gene	3422070	3422765	.	-	.	ID=gene3020;Name=YPO3066;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3066
AL590842.1	EMBL	CDS	3422070	3422765	.	-	0	ID=cds2977;Parent=gene3020;Dbxref=UniProtKB/TrEMBL:Q7CJJ5,NCBI_GP:CAL21668.1;Name=CAL21668.1;Note=no significant database hits. Similar to YPO1619 (53%25 identity in 166 aa overlap);gbkey=CDS;product=hypothetical protein;protein_id=CAL21668.1;transl_table=11
AL590842.1	EMBL	gene	3423103	3423276	.	+	.	ID=gene3021;Name=YPO3067;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3067
AL590842.1	EMBL	CDS	3423103	3423276	.	+	0	ID=cds2978;Parent=gene3021;Dbxref=UniProtKB/TrEMBL:Q74SC7,NCBI_GP:CAL21669.1;Name=CAL21669.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21669.1;transl_table=11
AL590842.1	EMBL	gene	3423365	3424429	.	-	.	ID=gene3022;Name=perM;gbkey=Gene;gene=perM;gene_biotype=protein_coding;locus_tag=YPO3068
AL590842.1	EMBL	CDS	3423365	3424429	.	-	0	ID=cds2979;Parent=gene3022;Dbxref=InterPro:IPR002549,UniProtKB/TrEMBL:Q7CJJ6,NCBI_GP:CAL21670.1;Name=CAL21670.1;Note=Similar to Escherichia coli putative Permease PerM SW:PERM_ECOLI (P77406) (353 aa) fasta scores: E(): 0%2C 78.1%25 id in 347 aa%2C and to Vibrio cholerae permease PerM%2Cputative Vc2162 TR:Q9KQ42 (EMBL:AE004288) (354 aa) fasta scores: E(): 0%2C 59.0%25 id in 346 aa;gbkey=CDS;gene=perM;inference=similar to sequence:INSDC:AE004288;product=putative membrane protein;protein_id=CAL21670.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3423392	3424378	.	-	.	ID=id7321;Note=Pfam match to entry PF01594 UPF0118%2C Domain of unknown function DUF20%2C score 329.10%2C E-value 4.9e-95;gbkey=misc_feature;gene=perM;inference=protein motif:PF01594
AL590842.1	EMBL	sequence_feature	3423434	3423499	.	-	.	ID=id7322;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=perM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3423530	3423586	.	-	.	ID=id7323;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=perM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3423608	3423673	.	-	.	ID=id7324;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=perM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3423704	3423769	.	-	.	ID=id7325;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=perM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3423899	3423964	.	-	.	ID=id7326;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=perM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3424151	3424216	.	-	.	ID=id7327;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=perM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3424277	3424369	.	-	.	ID=id7328;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=perM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3424784	3426244	.	+	.	ID=gene3023;Name=YPO3069;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3069
AL590842.1	EMBL	CDS	3424784	3426244	.	+	0	ID=cds2980;Parent=gene3023;Dbxref=GOA:Q8ZCC3,InterPro:IPR001915,InterPro:IPR011716,InterPro:IPR011990,NCBI_GP:CAL21671.1;Name=CAL21671.1;Note=Similar to Escherichia coli hypothetical protein TR:P76568 (EMBL:AE000336) (487 aa) fasta scores: E(): 0%2C70.9%25 id in 475 aa%2C and to Vibrio cholerae hypothetical protein Vc2164 TR:Q9KQ40 (EMBL:AE004288) (484 aa) fasta scores: E(): 0%2C 47.9%25 id in 455 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004288;product=putative exported protein;protein_id=CAL21671.1;transl_table=11
AL590842.1	EMBL	gene	3426351	3426707	.	+	.	ID=gene3024;Name=yfgD;gbkey=Gene;gene=yfgD;gene_biotype=protein_coding;locus_tag=YPO3070
AL590842.1	EMBL	CDS	3426351	3426707	.	+	0	ID=cds2981;Parent=gene3024;Dbxref=GOA:Q0WCJ8,InterPro:IPR006659,InterPro:IPR006660,InterPro:IPR012336,PDB:3RDW,UniProtKB/TrEMBL:Q0WCJ8,NCBI_GP:CAL21672.1;Name=CAL21672.1;Note=Similar to Yersinia enterocolitica arsenate reductase ArsC SW:ARSC_YEREN (P74984) (141 aa) fasta scores: E(): 4.3e-15%2C 43.6%25 id in 117 aa%2C and to Escherichia coli protein YfgD SW:YFGD_ECOLI (P76569) (119 aa) fasta scores: E(): 1.4e-28%2C 67.2%25 id in 116 aa%2C and to Escherichia coli arsenate reductase ArsC SW:ARC2_ECOLI (P52147) (141 aa) fasta scores: E(): 5.7e-17%2C 47.9%25 id in 117 aa;gbkey=CDS;gene=yfgD;product=putative arsenate reductase;protein_id=CAL21672.1;transl_table=11
AL590842.1	EMBL	gene	3426919	3427638	.	-	.	ID=gene3025;Name=YPO3071;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3071
AL590842.1	EMBL	CDS	3426919	3427638	.	-	0	ID=cds2982;Parent=gene3025;Dbxref=GOA:Q8ZCC1,InterPro:IPR013317,InterPro:IPR017788,InterPro:IPR020591,InterPro:IPR022864,InterPro:IPR027417,NCBI_GP:CAL21673.1;Name=CAL21673.1;Note=Similar to Escherichia coli hypothetical protein YfgE SW:YFGE_ECOLI (P76570) (248 aa) fasta scores: E(): 0%2C85.8%25 id in 239 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0947 TR:AAG04336 (EMBL:AE004529) (234 aa) fasta scores: E(): 0%2C 48.1%25 id in 231 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004529;product=conserved hypothetical protein;protein_id=CAL21673.1;transl_table=11
AL590842.1	EMBL	repeat_region	3427706	3428417	.	-	.	ID=id7329;Note=Contains a 'A' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	3427814	3428272	.	-	.	ID=gene3026;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO3072
AL590842.1	EMBL	CDS	3427814	3428272	.	-	0	ID=cds2983;Parent=gene3026;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL21674.1;Name=CAL21674.1;Note=Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL21674.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3427907	3428218	.	-	.	ID=id7330;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	3428619	3430004	.	-	.	ID=gene3027;Name=cysS;gbkey=Gene;gene=cysS;gene_biotype=protein_coding;locus_tag=YPO3073
AL590842.1	EMBL	CDS	3428619	3430004	.	-	0	ID=cds2984;Parent=gene3027;Dbxref=GOA:Q8ZCC0,InterPro:IPR009080,InterPro:IPR014729,InterPro:IPR015273,InterPro:IPR015803,InterPro:IPR024909,NCBI_GP:CAL21675.1;Name=CAL21675.1;Note=Similar to Escherichia coli cysteinyl-tRNA synthetase CysS SW:SYC_ECOLI (P21888) (461 aa) fasta scores: E(): 0%2C 83.9%25 id in 461 aa%2C and to Vibrio cholerae cysteinyl-tRNA synthetase CysS or Vc1848 SW:SYC_VIBCH (Q9KQZ9) (459 aa) fasta scores: E(): 0%2C 75.5%25 id in 461 aa;gbkey=CDS;gene=cysS;product=cysteinyl-tRNA synthetase;protein_id=CAL21675.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3428664	3429965	.	-	.	ID=id7331;Note=Pfam match to entry PF01406 tRNA-synt_1e%2C tRNA synthetases class I (C)%2C score 918.30%2C E-value 2.1e-272;gbkey=misc_feature;gene=cysS;inference=protein motif:PF01406
AL590842.1	EMBL	gene	3430215	3430709	.	+	.	ID=gene3028;Name=ppiB;gbkey=Gene;gene=ppiB;gene_biotype=protein_coding;locus_tag=YPO3074
AL590842.1	EMBL	CDS	3430215	3430709	.	+	0	ID=cds2985;Parent=gene3028;Dbxref=GOA:Q7CJZ0,InterPro:IPR002130,InterPro:IPR020892,InterPro:IPR029000,UniProtKB/TrEMBL:Q7CJZ0,NCBI_GP:CAL21676.1;Name=CAL21676.1;Note=Similar to Escherichia coli peptidyl-prolyl cis-trans isomerase B PpiB SW:PPIB_ECOLI (P23869) (164 aa) fasta scores: E(): 0%2C 84.8%25 id in 164 aa%2C and to Haemophilus influenzae peptidyl-prolyl cis-trans isomerase B Ppib or hi0079 SW:PPIB_HAEIN (P44499) (169 aa) fasta scores: E(): 0%2C 70.8%25 id in 168 aa. Similar to YPO0167 (50.9%25 identity in 161 aa overlap);gbkey=CDS;gene=ppiB;product=peptidyl-prolyl cis-trans isomerase B;protein_id=CAL21676.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3430215	3430706	.	+	.	ID=id7332;Note=Pfam match to entry PF00160 pro_isomerase%2CCyclophilin type peptidyl-prolyl cis-trans isomerase%2C score 213.90%2C E-value 2.7e-61;gbkey=misc_feature;gene=ppiB;inference=protein motif:PF00160
AL590842.1	EMBL	sequence_feature	3430320	3430373	.	+	.	ID=id7333;Note=PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.;gbkey=misc_feature;gene=ppiB;inference=protein motif:ProSite:PS00170
AL590842.1	EMBL	gene	3430720	3431442	.	+	.	ID=gene3029;Name=YPO3075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3075
AL590842.1	EMBL	CDS	3430720	3431442	.	+	0	ID=cds2986;Parent=gene3029;Dbxref=GOA:Q8ZCB8,InterPro:IPR010138,InterPro:IPR024654,InterPro:IPR029052,NCBI_GP:CAL21677.1;Name=CAL21677.1;Note=Similar to Escherichia coli hypothetical protein YbbF SW:YBBF_ECOLI (P43341) (240 aa) fasta scores: E(): 0%2C70.0%25 id in 240 aa%2C and to Vibrio cholerae hypothetical protein VC1850 TR:Q9KQZ7 (EMBL:AE004260) (242 aa) fasta scores: E(): 0%2C 52.4%25 id in 227 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004260;product=conserved hypothetical protein;protein_id=CAL21677.1;transl_table=11
AL590842.1	EMBL	gene	3431738	3432262	.	+	.	ID=gene3030;Name=purE;gbkey=Gene;gene=purE;gene_biotype=protein_coding;locus_tag=YPO3076
AL590842.1	EMBL	CDS	3431738	3432262	.	+	0	ID=cds2987;Parent=gene3030;Dbxref=GOA:Q7CJZ1,InterPro:IPR000031,InterPro:IPR024694,PDB:3KUU,UniProtKB/TrEMBL:Q7CJZ1,NCBI_GP:CAL21678.1;Name=CAL21678.1;Note=Similar to Escherichia coli phosphoribosylaminoimidazole carboxylase catalytic subunit PurE SW:PUR6_ECOLI (P09028) (168 aa) fasta scores: E(): 0%2C81.0%25 id in 168 aa%2C and to Haemophilus influenzae phosphoribosylaminoimidazole carboxylase catalytic subunit PurE or Hi1615 SW:PUR6_HAEIN (P43849) (164 aa) fasta scores: E(): 0%2C 77.2%25 id in 158 aa;gbkey=CDS;gene=purE;product=phosphoribosylaminoimidazole carboxylase catalytic subunit PurE;protein_id=CAL21678.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3431777	3432226	.	+	.	ID=id7334;Note=Pfam match to entry PF00731 AIRC%2C AIR carboxylase%2Cscore 315.00%2C E-value 8.6e-91;gbkey=misc_feature;gene=purE;inference=protein motif:PF00731
AL590842.1	EMBL	gene	3432259	3433323	.	+	.	ID=gene3031;Name=purK;gbkey=Gene;gene=purK;gene_biotype=protein_coding;locus_tag=YPO3077
AL590842.1	EMBL	CDS	3432259	3433323	.	+	0	ID=cds2988;Parent=gene3031;Dbxref=GOA:Q7CJZ2,InterPro:IPR003135,InterPro:IPR005875,InterPro:IPR011054,InterPro:IPR011761,InterPro:IPR013816,InterPro:IPR016185,UniProtKB/TrEMBL:Q7CJZ2,NCBI_GP:CAL21679.1;Name=CAL21679.1;Note=Similar to Escherichia coli phosphoribosylaminoimidazole carboxylase ATPase subunit PurK SW:PURK_ECOLI (P09029) (355 aa) fasta scores: E(): 0%2C77.1%25 id in 354 aa%2C and to Haemophilus influenzae phosphoribosylaminoimidazole carboxylase ATPase subunit PurK or Hi1616 SW:PURK_HAEIN (P43850) (362 aa) fasta scores: E(): 0%2C 57.9%25 id in 354 aa;gbkey=CDS;gene=purK;product=phosphoribosylaminoimidazole carboxylase ATPase subunit PurK;protein_id=CAL21679.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3432346	3432759	.	+	.	ID=id7335;Note=Pfam match to entry PF02222 ATP-grasp%2C ATP-grasp domain%2C score 50.00%2C E-value 5.2e-11;gbkey=misc_feature;gene=purK;inference=protein motif:PF02222
AL590842.1	EMBL	gene	3433367	3435796	.	-	.	ID=gene3032;Name=ybbP;gbkey=Gene;gene=ybbP;gene_biotype=protein_coding;locus_tag=YPO3078
AL590842.1	EMBL	CDS	3433367	3435796	.	-	0	ID=cds2989;Parent=gene3032;Dbxref=GOA:Q0WCJ0,InterPro:IPR003838,UniProtKB/TrEMBL:Q0WCJ0,NCBI_GP:CAL21680.1;Name=CAL21680.1;Note=Similar to Escherichia coli hypothetical 89.3 kDa protein in tesA-rhsD intergenic region YbbP SW:YBBP_ECOLI (P77504) (804 aa) fasta scores: E(): 0%2C 68.7%25 id in 808 aa%2Cand to Vibrio cholerae hypothetical protein Vca0781 TR:Q9KLG3 (EMBL:AE004406) (815 aa) fasta scores: E(): 0%2C36.5%25 id in 805 aa;gbkey=CDS;gene=ybbP;inference=similar to sequence:INSDC:AE004406;product=putative permease;protein_id=CAL21680.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3433406	3433471	.	-	.	ID=id7336;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ybbP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3433517	3433582	.	-	.	ID=id7337;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ybbP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3433685	3433750	.	-	.	ID=id7338;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ybbP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3434381	3434446	.	-	.	ID=id7339;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ybbP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3434510	3434575	.	-	.	ID=id7340;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ybbP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3434606	3434668	.	-	.	ID=id7341;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ybbP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3434732	3434797	.	-	.	ID=id7342;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ybbP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3434858	3434923	.	-	.	ID=id7343;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ybbP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3435002	3435067	.	-	.	ID=id7344;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ybbP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3435692	3435757	.	-	.	ID=id7345;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=ybbP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3435713	3435745	.	-	.	ID=id7346;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=ybbP;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	3435793	3436479	.	-	.	ID=gene3033;Name=ybbA;gbkey=Gene;gene=ybbA;gene_biotype=protein_coding;locus_tag=YPO3079
AL590842.1	EMBL	CDS	3435793	3436479	.	-	0	ID=cds2990;Parent=gene3033;Dbxref=GOA:Q7CJZ3,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CJZ3,NCBI_GP:CAL21681.1;Name=CAL21681.1;Note=Similar to Escherichia coli hypothetical ABC transporter ATP-binding protein YbbA SW:YBBA_ECOLI (P31219) (228 aa) fasta scores: E(): 0%2C 78.9%25 id in 228 aa%2C and to Vibrio cholerae ABC transporter%2C ATP-binding protein Vca0782 TR:Q9KLG2 (EMBL:AE004406) (225 aa) fasta scores: E(): 0%2C 53.2%25 id in 222 aa;gbkey=CDS;gene=ybbA;inference=similar to sequence:INSDC:AE004406;product=putative ABC transporter ATP-binding protein;protein_id=CAL21681.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3435814	3436323	.	-	.	ID=id7347;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 122.00%2C E-value 1.1e-32;gbkey=misc_feature;gene=ybbA;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	3435997	3436041	.	-	.	ID=id7348;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=ybbA;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	3436447	3437085	.	+	.	ID=gene3034;Name=apeA;gbkey=Gene;gene=apeA;gene_biotype=protein_coding;gene_synonym=pldC,tesA;locus_tag=YPO3080
AL590842.1	EMBL	CDS	3436447	3437085	.	+	0	ID=cds2991;Parent=gene3034;Dbxref=GOA:Q0WCI8,InterPro:IPR008265,InterPro:IPR013831,UniProtKB/TrEMBL:Q0WCI8,NCBI_GP:CAL21682.1;Name=CAL21682.1;Note=Similar to Escherichia coli acyl-CoA thioesterase I precursor TesA or ApeA or PldC SW:TESA_ECOLI (P29679) (208 aa) fasta scores: E(): 0%2C 71.2%25 id in 208 aa%2C and to Vibrio cholerae arylesterase vca0783 TR:Q9KLG1 (EMBL:AE004406) (215 aa) fasta scores: E(): 0%2C 62.2%25 id in 193 aa;gbkey=CDS;gene=apeA;inference=similar to sequence:INSDC:AE004406;product=putative acyl-CoA thioesterase;protein_id=CAL21682.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3436534	3436779	.	+	.	ID=id7349;Note=Pfam match to entry PF00657 Lipase_GDSL%2CLipase/Acylhydrolase with GDSL-like motif%2C score 65.10%2CE-value 1.5e-15;gbkey=misc_feature;gene=apeA;inference=protein motif:PF00657
AL590842.1	EMBL	sequence_feature	3436537	3436569	.	+	.	ID=id7350;Note=PS01098 Lipolytic enzymes 'G-D-S-L' family%2C serine active site.;gbkey=misc_feature;gene=apeA;inference=protein motif:ProSite:PS01098
AL590842.1	EMBL	gene	3437472	3438248	.	+	.	ID=gene3035;Name=ybbO;gbkey=Gene;gene=ybbO;gene_biotype=protein_coding;locus_tag=YPO3081
AL590842.1	EMBL	CDS	3437472	3438248	.	+	0	ID=cds2992;Parent=gene3035;Dbxref=GOA:Q7CJZ4,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:Q7CJZ4,NCBI_GP:CAL21683.1;Name=CAL21683.1;Note=Similar to Escherichia coli hypothetical oxidoreductase in ushA-tesA intergenic region YbbO SW:YBBO_ECOLI (P77388) (269 aa) fasta scores: E(): 0%2C 68.4%25 id in 256 aa%2C and to Vibrio cholerae oxidoreductase%2Cshort-chain dehydrogenase/reductase family Vc0979 TR:Q9KTC3 (EMBL:AE004179) (275 aa) fasta scores: E(): 0%2C 46.9%25 id in 271 aa;gbkey=CDS;gene=ybbO;inference=similar to sequence:INSDC:AE004179;product=probable short-chain dehydrogenase;protein_id=CAL21683.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3437478	3438017	.	+	.	ID=id7351;Note=Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase%2C score 169.40%2C E-value 5.9e-47;gbkey=misc_feature;gene=ybbO;inference=protein motif:PF00106
AL590842.1	EMBL	sequence_feature	3437868	3437954	.	+	.	ID=id7352;Note=PS00061 Short-chain dehydrogenases/reductases family signature.;gbkey=misc_feature;gene=ybbO;inference=protein motif:ProSite:PS00061
AL590842.1	EMBL	gene	3438325	3439194	.	+	.	ID=gene3036;Name=ybbN;gbkey=Gene;gene=ybbN;gene_biotype=protein_coding;locus_tag=YPO3082
AL590842.1	EMBL	CDS	3438325	3439194	.	+	0	ID=cds2993;Parent=gene3036;Dbxref=GOA:Q7CJZ5,InterPro:IPR005746,InterPro:IPR011990,InterPro:IPR012336,InterPro:IPR013766,UniProtKB/TrEMBL:Q7CJZ5,NCBI_GP:CAL21684.1;Name=CAL21684.1;Note=Similar to Escherichia coli hypothetical 33.1 kDa protein in ushA-tesA intergenic region YbbN SW:YBBN_ECOLI (P77395) (296 aa) fasta scores: E(): 0%2C 71.6%25 id in 289 aa%2Cand to Vibrio cholerae hypothetical protein Vc0977 TR:Q9KTC5 (EMBL:AE004179) (306 aa) fasta scores: E(): 0%2C40.8%25 id in 292 aa;gbkey=CDS;gene=ybbN;inference=similar to sequence:INSDC:AE004179;product=putative thioredoxin;protein_id=CAL21684.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3438433	3438657	.	+	.	ID=id7353;Note=Pfam match to entry PF00085 thiored%2C Thioredoxin%2Cscore 64.20%2C E-value 5e-18;gbkey=misc_feature;gene=ybbN;inference=protein motif:PF00085
AL590842.1	EMBL	sequence_feature	3438616	3438645	.	+	.	ID=id7354;Note=PS00215 Mitochondrial energy transfer proteins signature.;gbkey=misc_feature;gene=ybbN;inference=protein motif:ProSite:PS00215
AL590842.1	EMBL	gene	3439389	3440303	.	+	.	ID=gene3037;Name=YPO3083;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3083
AL590842.1	EMBL	CDS	3439389	3440303	.	+	0	ID=cds2994;Parent=gene3037;Dbxref=GOA:Q7CJZ6,InterPro:IPR001107,InterPro:IPR001972,InterPro:IPR018080,UniProtKB/TrEMBL:Q7CJZ6,NCBI_GP:CAL21685.1;Name=CAL21685.1;Note=Similar to Escherichia coli hypothetical protein YbbK SW:YBBK_ECOLI (P77367) (305 aa) fasta scores: E(): 0%2C83.8%25 id in 302 aa%2C and to Vibrio cholerae hypothetical protein VC0976 TR:Q9KTC6 (EMBL:AE004179) (306 aa) fasta scores: E(): 0%2C 71.1%25 id in 298 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004179;product=conserved hypothetical protein;protein_id=CAL21685.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3439401	3439973	.	+	.	ID=id7355;Note=Pfam match to entry PF01145 Band_7%2C SPFH domain / Band 7 family%2C score 338.60%2C E-value 6.9e-98;gbkey=misc_feature;inference=protein motif:PF01145
AL590842.1	EMBL	sequence_feature	3439782	3439868	.	+	.	ID=id7356;Note=PS01270 Band 7 protein family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01270
AL590842.1	EMBL	gene	3440306	3440755	.	+	.	ID=gene3038;Name=ybbJ;gbkey=Gene;gene=ybbJ;gene_biotype=protein_coding;locus_tag=YPO3084
AL590842.1	EMBL	CDS	3440306	3440755	.	+	0	ID=cds2995;Parent=gene3038;Dbxref=InterPro:IPR002810,InterPro:IPR012340,UniProtKB/TrEMBL:Q7CJZ7,NCBI_GP:CAL21686.1;Name=CAL21686.1;Note=Similar to Escherichia coli hypothetical 16.8 kDa protein in ushA-tesA intergenic region YbbJ SW:YBBJ_ECOLI (P75709) (151 aa) fasta scores: E(): 0%2C 58.0%25 id in 150 aa%2Cand to Vibrio cholerae hypothetical protein Vc0975 TR:Q9KTC7 (EMBL:AE004179) (189 aa) fasta scores: E(): 4e-19%2C 41.0%25 id in 139 aa;gbkey=CDS;gene=ybbJ;inference=similar to sequence:INSDC:AE004179;product=putative membrane protein;protein_id=CAL21686.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3440318	3440374	.	+	.	ID=id7357;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=ybbJ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3440393	3440452	.	+	.	ID=id7358;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=ybbJ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3440462	3440530	.	+	.	ID=id7359;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=ybbJ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3440864	3441283	.	-	.	ID=gene3039;Name=cueR;gbkey=Gene;gene=cueR;gene_biotype=protein_coding;locus_tag=YPO3085
AL590842.1	EMBL	CDS	3440864	3441283	.	-	0	ID=cds2996;Parent=gene3039;Dbxref=GOA:Q8ZCA8,InterPro:IPR000551,InterPro:IPR009061,InterPro:IPR011789,InterPro:IPR015358,NCBI_GP:CAL21687.1;Name=CAL21687.1;Note=Similar to Escherichia coli transcriptional regulator CueR TR:AAK06655 (EMBL:AF318185) (135 aa) fasta scores: E(): 0%2C 72.5%25 id in 131 aa%2C and to Vibrio cholerae transcriptional regulator%2C merR family VC0974 TR:Q9KTC8 (EMBL:AE004179) (139 aa) fasta scores: E(): 2.3e-24%2C 46.3%25 id in 136 aa;gbkey=CDS;gene=cueR;inference=similar to sequence:INSDC:AF318185;product=putative regulatory protein;protein_id=CAL21687.1;transl_table=11
AL590842.1	EMBL	gene	3441490	3444375	.	+	.	ID=gene3040;Name=ybaR;gbkey=Gene;gene=ybaR;gene_biotype=protein_coding;locus_tag=YPO3086
AL590842.1	EMBL	CDS	3441490	3444375	.	+	0	ID=cds2997;Parent=gene3040;Dbxref=GOA:Q8ZCA7,InterPro:IPR001757,InterPro:IPR006121,InterPro:IPR008250,InterPro:IPR017969,InterPro:IPR018303,InterPro:IPR023214,InterPro:IPR023299,InterPro:IPR027256,NCBI_GP:CAL21688.1;Name=CAL21688.1;Note=Similar to Synechococcus sp. cation-transporting ATPase PacS SW:ATCS_SYNP7 (P37279) (747 aa) fasta scores: E(): 0%2C 44.5%25 id in 749 aa%2C and to Escherichia coli probable copper-transporting ATPase YbaR SW:ATCU_ECOLI (Q59385) (834 aa) fasta scores: E(): 0%2C 66.7%25 id in 891 aa;gbkey=CDS;gene=ybaR;inference=protein motif:TMHMM:2.0;product=putative cation-transporting ATPase;protein_id=CAL21688.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3441502	3441684	.	+	.	ID=id7360;Note=Pfam match to entry PF00403 HMA%2CHeavy-metal-associated domain%2C score 38.00%2C E-value 2.3e-09;gbkey=misc_feature;gene=ybaR;inference=protein motif:PF00403
AL590842.1	EMBL	sequence_feature	3441514	3441603	.	+	.	ID=id7361;Note=PS01047 Heavy-metal-associated domain.;gbkey=misc_feature;gene=ybaR;inference=protein motif:ProSite:PS01047
AL590842.1	EMBL	sequence_feature	3441700	3441882	.	+	.	ID=id7362;Note=Pfam match to entry PF00403 HMA%2CHeavy-metal-associated domain%2C score 51.30%2C E-value 3.7e-13;gbkey=misc_feature;gene=ybaR;inference=protein motif:PF00403
AL590842.1	EMBL	sequence_feature	3441712	3441801	.	+	.	ID=id7363;Note=PS01047 Heavy-metal-associated domain.;gbkey=misc_feature;gene=ybaR;inference=protein motif:ProSite:PS01047
AL590842.1	EMBL	sequence_feature	3442171	3442359	.	+	.	ID=id7364;Note=Pfam match to entry PF00403 HMA%2CHeavy-metal-associated domain%2C score 72.40%2C E-value 3.2e-19;gbkey=misc_feature;gene=ybaR;inference=protein motif:PF00403
AL590842.1	EMBL	sequence_feature	3442183	3442272	.	+	.	ID=id7365;Note=PS01047 Heavy-metal-associated domain.;gbkey=misc_feature;gene=ybaR;inference=protein motif:ProSite:PS01047
AL590842.1	EMBL	sequence_feature	3442435	3442503	.	+	.	ID=id7366;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=ybaR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3442531	3442599	.	+	.	ID=id7367;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=ybaR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3442633	3442692	.	+	.	ID=id7368;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=ybaR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3442720	3442773	.	+	.	ID=id7369;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=ybaR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3442741	3443409	.	+	.	ID=id7370;Note=Pfam match to entry PF00122 E1-E2_ATPase%2C E1-E2 ATPase%2C score 302.40%2C E-value 1.2e-90;gbkey=misc_feature;gene=ybaR;inference=protein motif:PF00122
AL590842.1	EMBL	sequence_feature	3443176	3443244	.	+	.	ID=id7371;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=ybaR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3443257	3443325	.	+	.	ID=id7372;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=ybaR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3443437	3443457	.	+	.	ID=id7373;Note=PS00154 E1-E2 ATPases phosphorylation site.;gbkey=misc_feature;gene=ybaR;inference=protein motif:ProSite:PS00154
AL590842.1	EMBL	sequence_feature	3444022	3444090	.	+	.	ID=id7374;Note=PS01229 Hypothetical cof family signature 2.;gbkey=misc_feature;gene=ybaR;inference=protein motif:ProSite:PS01229
AL590842.1	EMBL	sequence_feature	3444133	3444198	.	+	.	ID=id7375;Note=Predicted helix-turn-helix motif with score 1013 (+2.64 SD) at aa 882-903%2C sequence HSLYGVVDAVELSKATLRNMKQ;gbkey=misc_feature;gene=ybaR
AL590842.1	EMBL	sequence_feature	3444202	3444261	.	+	.	ID=id7376;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=ybaR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3444274	3444342	.	+	.	ID=id7377;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=ybaR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3444896	3445705	.	+	.	ID=gene3041;Name=YPO3087;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3087
AL590842.1	EMBL	CDS	3444896	3445705	.	+	0	ID=cds2998;Parent=gene3041;Dbxref=GOA:Q7CJZ8,InterPro:IPR002816,UniProtKB/TrEMBL:Q7CJZ8,NCBI_GP:CAL21689.1;Name=CAL21689.1;Note=Similar to Escherichia coli hypothetical protein YbaP SW:YBAP_ECOLI (P77301) (264 aa) fasta scores: E(): 0%2C56.6%25 id in 265 aa%2C and to Vibrio cholerae hypothetical protein VC2220 TR:Q9KPZ2 (EMBL:AE004294) (298 aa) fasta scores: E(): 5.4e-20%2C 30.5%25 id in 269 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004294;product=conserved hypothetical protein;protein_id=CAL21689.1;transl_table=11
AL590842.1	EMBL	gene	3445969	3446448	.	+	.	ID=gene3042;Name=YPO3088;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3088
AL590842.1	EMBL	CDS	3445969	3446448	.	+	0	ID=cds2999;Parent=gene3042;Dbxref=GOA:Q0WCI0,InterPro:IPR004369,InterPro:IPR007214,UniProtKB/TrEMBL:Q0WCI0,NCBI_GP:CAL21690.1;Name=CAL21690.1;Note=Similar to Escherichia coli protein YbaK SW:YBAK_ECOLI (P37175) (159 aa) fasta scores: E(): 0%2C 77.4%25 id in 159 aa%2C and to Salmonella typhimurium protein YbaK SW:YBAK_SALTY (P37174) (159 aa) fasta scores: E(): 0%2C 76.1%25 id in 159 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21690.1;transl_table=11
AL590842.1	EMBL	gene	3446740	3447024	.	+	.	ID=gene3043;Name=YPO3089;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3089
AL590842.1	EMBL	CDS	3446740	3447024	.	+	0	ID=cds3000;Parent=gene3043;Dbxref=UniProtKB/TrEMBL:Q7CJZ9,NCBI_GP:CAL21691.1;Name=CAL21691.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21691.1;transl_table=11
AL590842.1	EMBL	pseudogene	3447128	3448783	.	-	.	ID=gene3044;Name=ushA;gbkey=Gene;gene=ushA;gene_biotype=pseudogene;locus_tag=YPO3090;pseudo=true
AL590842.1	EMBL	CDS	3447128	3448783	.	-	0	ID=cds3001;Parent=gene3044;Note=Similar to Escherichia coli UDP-sugar hydrolase (5'-nucleotidase) UshA SW:USHA_ECOLI (P07024) (550 aa) fasta scores: E(): 0%2C 74.7%25 id in 537 aa%2C and to Enterobacter aerogenes UDP-sugar hydrolase precursor UshA TR:Q9RQT7 (EMBL:AF068226) (550 aa) fasta scores: E(): 0%2C74.3%25 id in 537 aa. There are 2 possible frameshifts following codons 84 and 322. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=ushA;inference=similar to sequence:INSDC:AF068226;product=UDP-sugar hydrolase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	3447212	3447751	.	-	.	ID=id7378;Note=Pfam match to entry PF01009 5_nucleotidase%2C5'-nucleotidase%2C score 210.10%2C E-value 3.2e-59;gbkey=misc_feature;gene=ushA;inference=protein motif:PF01009
AL590842.1	EMBL	sequence_feature	3447817	3448530	.	-	.	ID=id7379;Note=Pfam match to entry PF01009 5_nucleotidase%2C5'-nucleotidase%2C score 342.90%2C E-value 3.5e-99;gbkey=misc_feature;gene=ushA;inference=protein motif:PF01009
AL590842.1	EMBL	sequence_feature	3448423	3448458	.	-	.	ID=id7380;Note=PS00786 5'-nucleotidase signature 2.;gbkey=misc_feature;gene=ushA;inference=protein motif:ProSite:PS00786
AL590842.1	EMBL	sequence_feature	3448529	3448684	.	-	.	ID=id7381;Note=Pfam match to entry PF01009 5_nucleotidase%2C5'-nucleotidase%2C score 49.90%2C E-value 3.5e-13;gbkey=misc_feature;gene=ushA;inference=protein motif:PF01009
AL590842.1	EMBL	sequence_feature	3448646	3448684	.	-	.	ID=id7382;Note=PS00785 5'-nucleotidase signature 1.;gbkey=misc_feature;gene=ushA;inference=protein motif:ProSite:PS00785
AL590842.1	EMBL	gene	3449065	3450279	.	+	.	ID=gene3045;Name=fsr;gbkey=Gene;gene=fsr;gene_biotype=protein_coding;gene_synonym=rosA;locus_tag=YPO3093
AL590842.1	EMBL	CDS	3449065	3450279	.	+	0	ID=cds3002;Parent=gene3045;Dbxref=GOA:Q7CK00,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q7CK00,NCBI_GP:CAL21693.1;Name=CAL21693.1;Note=Similar to Yersinia enterocolitica efflux pump RosA TR:Q56877 (EMBL:U46859) (410 aa) fasta scores: E(): 0%2C84.7%25 id in 412 aa%2C and to Escherichia coli fosmidomycin resistance protein Fsr SW:FSR_ECOLI (P52067) (406 aa) fasta scores: E(): 0%2C 76.2%25 id in 395 aa;gbkey=CDS;gene=fsr;inference=similar to sequence:INSDC:U46859;product=putative membrane efflux protein;protein_id=CAL21693.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3449242	3449310	.	+	.	ID=id7383;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=fsr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3449353	3449448	.	+	.	ID=id7384;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=fsr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3449509	3449577	.	+	.	ID=id7385;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=fsr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3449590	3449649	.	+	.	ID=id7386;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=fsr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3449743	3449811	.	+	.	ID=id7387;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=fsr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3449854	3449922	.	+	.	ID=id7388;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=fsr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3449941	3450000	.	+	.	ID=id7389;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=fsr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3450010	3450078	.	+	.	ID=id7390;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=fsr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3450103	3450171	.	+	.	ID=id7391;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=fsr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3450199	3450267	.	+	.	ID=id7392;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=fsr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3450514	3452205	.	+	.	ID=gene3046;Name=rosB;gbkey=Gene;gene=rosB;gene_biotype=protein_coding;gene_synonym=ybaL;locus_tag=YPO3094
AL590842.1	EMBL	CDS	3450514	3452205	.	+	0	ID=cds3003;Parent=gene3046;Dbxref=GOA:Q7CK01,InterPro:IPR003148,InterPro:IPR004771,InterPro:IPR006153,InterPro:IPR016040,UniProtKB/TrEMBL:Q7CK01,NCBI_GP:CAL21694.1;Name=CAL21694.1;Note=Similar to Escherichia coli glutathione-regulated potassium-efflux system protein KefC or TrkC SW:KEFC_ECOLI (P03819) (620 aa) fasta scores: E(): 1.2e-26%2C 28.2%25 id in 550 aa%2C and to Yersinia enterocolitica potassium antiporter RosB TR:Q56876 (EMBL:U46859) (563 aa) fasta scores: E(): 0%2C87.9%25 id in 563 aa%2C and to Escherichia coli hypothetical 59.4 kDa protein in gsk-fsr intergenic region YbaL SW:YBAL_ECOLI (P39830) (558 aa) fasta scores: E(): 0%2C 79.7%25 id in 548 aa;gbkey=CDS;gene=rosB;inference=similar to sequence:INSDC:U46859;product=putative potassium antiporter;protein_id=CAL21694.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3450523	3450591	.	+	.	ID=id7393;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=rosB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3450610	3450669	.	+	.	ID=id7394;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=rosB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3450679	3450747	.	+	.	ID=id7395;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=rosB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3450772	3450840	.	+	.	ID=id7396;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=rosB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3450853	3450921	.	+	.	ID=id7397;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=rosB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3450958	3451026	.	+	.	ID=id7398;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=rosB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3451069	3451137	.	+	.	ID=id7399;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=rosB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3451198	3451266	.	+	.	ID=id7400;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=rosB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3451354	3451413	.	+	.	ID=id7401;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=rosB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3451417	3451485	.	+	.	ID=id7402;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=rosB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3451441	3451464	.	+	.	ID=id7403;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=rosB;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3451528	3451596	.	+	.	ID=id7404;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=rosB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3451615	3451674	.	+	.	ID=id7405;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=rosB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3451768	3452118	.	+	.	ID=id7406;Note=Pfam match to entry PF02254 KTN%2C KTN NAD-binding domain%2C score 104.10%2C E-value 2.8e-27;gbkey=misc_feature;gene=rosB;inference=protein motif:PF02254
AL590842.1	EMBL	gene	3452302	3453606	.	-	.	ID=gene3047;Name=gsk;gbkey=Gene;gene=gsk;gene_biotype=protein_coding;locus_tag=YPO3095
AL590842.1	EMBL	CDS	3452302	3453606	.	-	0	ID=cds3004;Parent=gene3047;Dbxref=GOA:Q7CK02,InterPro:IPR011611,InterPro:IPR029056,UniProtKB/TrEMBL:Q7CK02,NCBI_GP:CAL21695.1;Name=CAL21695.1;Note=Similar to Escherichia coli inosine-guanosine kinase Gsk SW:INGK_ECOLI (P22937) (434 aa) fasta scores: E(): 0%2C83.4%25 id in 434 aa%2C and to Yersinia enterocolitica inosine-guanosine kinase Gsk TR:Q56875 (EMBL:U46859) (434 aa) fasta scores: E(): 0%2C 90.3%25 id in 434 aa;gbkey=CDS;gene=gsk;inference=similar to sequence:INSDC:U46859;product=inosine-guanosine kinase;protein_id=CAL21695.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3452512	3452553	.	-	.	ID=id7407;Note=PS00584 pfkB family of carbohydrate kinases signature 2.;gbkey=misc_feature;gene=gsk;inference=protein motif:ProSite:PS00584
AL590842.1	EMBL	sequence_feature	3452518	3453333	.	-	.	ID=id7408;Note=Pfam match to entry PF00294 pfkB%2C pfkB family carbohydrate kinase%2C score 124.30%2C E-value 2.3e-33;gbkey=misc_feature;gene=gsk;inference=protein motif:PF00294
AL590842.1	EMBL	gene	3453810	3454961	.	-	.	ID=gene3048;Name=cld;gbkey=Gene;gene=cld;gene_biotype=protein_coding;gene_synonym=wzz;locus_tag=YPO3096
AL590842.1	EMBL	CDS	3453810	3454961	.	-	0	ID=cds3005;Parent=gene3048;Dbxref=GOA:Q9RCC2,InterPro:IPR003856,UniProtKB/TrEMBL:Q9RCC2,NCBI_GP:CAL21696.1;Name=CAL21696.1;Note=Similar to Yersinia pseudotuberculosis chain length determinant Cld or Wzz TR:Q56932 (EMBL:U13685) (383 aa) fasta scores: E(): 0%2C 98.7%25 id in 383 aa%2C and identical to the previously sequenced Yersinia pestis O-antigen chain length determinant-like protein Wzz TR:Q9RCC2 (EMBL:AJ251713) (383 aa) fasta scores: E(): 0%2C 100.0%25 id in 383 aa;gbkey=CDS;gene=cld;inference=similar to sequence:INSDC:U13685;product=O-antigen chain length determinant;protein_id=CAL21696.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3453876	3453932	.	-	.	ID=id7409;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=cld;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3454767	3454823	.	-	.	ID=id7410;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=cld;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3455009	3456382	.	-	.	ID=gene3049;Name=manB;gbkey=Gene;gene=manB;gene_biotype=protein_coding;gene_synonym=rfbK;locus_tag=YPO3097
AL590842.1	EMBL	CDS	3455009	3456382	.	-	0	ID=cds3006;Parent=gene3049;Dbxref=GOA:Q9RCC3,InterPro:IPR005841,InterPro:IPR005843,InterPro:IPR005844,InterPro:IPR005845,InterPro:IPR005846,InterPro:IPR016055,InterPro:IPR016066,UniProtKB/TrEMBL:Q9RCC3,NCBI_GP:CAL21697.1;Name=CAL21697.1;Note=Similar to Yersinia pseudotuberculosis phosphomannomutase ManB TR:Q9RCA9 (EMBL:AJ251712) (457 aa) fasta scores: E(): 0%2C 99.8%25 id in 457 aa%2C and to Yersinia enterocolitica phosphomannomutase RfbK or ManB TR:Q57439 (EMBL:U46859) (456 aa) fasta scores: E(): 0%2C 81.8%25 id in 456 aa. Identical to the previously sequenced Yersinia pestis phosphomannomutase ManB TR:Q9RCC3 (EMBL:AJ251713) (457 aa) fasta scores: E(): 0%2C 100.0%25 id in 457 aa. Similar to YPO2479 (61.4%25 identity in 461 aa overlap);gbkey=CDS;gene=manB;inference=similar to sequence:INSDC:U46859;product=phosphomannomutase;protein_id=CAL21697.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3455054	3456376	.	-	.	ID=id7411;Note=Pfam match to entry PF00408 PGM_PMM%2CPhosphoglucomutase/phosphomannomutase%2C score 750.30%2CE-value 8e-222;gbkey=misc_feature;gene=manB;inference=protein motif:PF00408
AL590842.1	EMBL	sequence_feature	3456065	3456109	.	-	.	ID=id7412;Note=PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature.;gbkey=misc_feature;gene=manB;inference=protein motif:ProSite:PS00710
AL590842.1	EMBL	gene	3456387	3457130	.	-	.	ID=gene3050;Name=wbyL;gbkey=Gene;gene=wbyL;gene_biotype=protein_coding;locus_tag=YPO3098
AL590842.1	EMBL	CDS	3456387	3457130	.	-	0	ID=cds3007;Parent=gene3050;Dbxref=GOA:Q9RCC4,InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:Q9RCC4,NCBI_GP:CAL21698.1;Name=CAL21698.1;Note=Identical to the previously sequenced Yersinia pestis glycosyltransferase-like protein WbyL TR:Q9RCC4 (EMBL:AJ251713) (247 aa) fasta scores: E(): 0%2C 100.0%25 id in 247 aa%2C and similar to Yersinia pseudotuberculosis glycosyltransferase-like protein WbyL TR:Q9RCB0 (EMBL:AJ251712) (247 aa) fasta scores: E(): 0%2C 99.6%25 id in 247 aa;gbkey=CDS;gene=wbyL;inference=similar to sequence:INSDC:AJ251713;product=probable glycosyltransferase;protein_id=CAL21698.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3456642	3457121	.	-	.	ID=id7413;Note=Pfam match to entry PF00535 Glycos_transf_2%2CGlycosyl transferases%2C score 45.70%2C E-value 1e-09;gbkey=misc_feature;gene=wbyL;inference=protein motif:PF00535
AL590842.1	EMBL	gene	3457133	3458545	.	-	.	ID=gene3051;Name=manC;gbkey=Gene;gene=manC;gene_biotype=protein_coding;gene_synonym=rfbM;locus_tag=YPO3099
AL590842.1	EMBL	CDS	3457133	3458545	.	-	0	ID=cds3008;Parent=gene3051;Dbxref=GOA:Q7CK05,InterPro:IPR001538,InterPro:IPR005835,InterPro:IPR006375,InterPro:IPR011051,InterPro:IPR014710,InterPro:IPR029044,UniProtKB/TrEMBL:Q7CK05,NCBI_GP:CAL21699.1;Name=CAL21699.1;Note=Similar to Yersinia pseudotuberculosis mannose-1-phosphate guanylyltransferase ManC TR:Q9RCB1 (EMBL:AJ251712) (468 aa) fasta scores: E(): 0%2C 99.8%25 id in 468 aa%2C and to Yersinia enterocolitica mannose-1-phosphate guanylyltransferase RfbM or ManC TR:Q56874 (EMBL:U46859) (465 aa) fasta scores: E(): 0%2C 80.7%25 id in 462 aa%2C and identical to the previously sequenced Yersinia pestis mannose-1-phosphate guanylyltransferase ManC TR:Q9RCC5 (EMBL:AJ251713) (468 aa) fasta scores: E(): 0%2C 100.0%25 id in 468 aa;gbkey=CDS;gene=manC;inference=similar to sequence:INSDC:U46859;product=mannose-1-phosphate guanylyltransferase;protein_id=CAL21699.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3457151	3457651	.	-	.	ID=id7414;Note=Pfam match to entry PF01050 MannoseP_isomer%2CMannose-6-phosphate isomerase%2C score 374.20%2C E-value 1.3e-108;gbkey=misc_feature;gene=manC;inference=protein motif:PF01050
AL590842.1	EMBL	sequence_feature	3457682	3458533	.	-	.	ID=id7415;Note=Pfam match to entry PF00483 NTP_transferase%2CNucleotidyl transferase%2C score 448.40%2C E-value 6.1e-131;gbkey=misc_feature;gene=manC;inference=protein motif:PF00483
AL590842.1	EMBL	pseudogene	3458733	3459697	.	-	.	ID=gene3052;Name=fcL;gbkey=Gene;gene=fcL;gene_biotype=pseudogene;gene_synonym=wbcJ;locus_tag=YPO3100;pseudo=true
AL590842.1	EMBL	CDS	3458733	3459697	.	-	0	ID=cds3009;Parent=gene3052;Note=Identical to Yersinia pseudotuberculosis GDP-L-fucose synthetase Fcl TR:Q9RCB2 (EMBL:AJ251712) (321 aa) fasta scores: E(): 0%2C 100.0%25 id in 321 aa%2C and similar to Yersinia enterocolitica fucose synthetase WbcJ TR:Q56873 (EMBL:U46859) (321 aa) fasta scores: E(): 0%2C 84.4%25 id in 321 aa. There is a frameshift following codon 68. Frameshift occurs within a homopolymeric tract of 6G. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=fcL;inference=similar to sequence:INSDC:U46859;product=GDP-L-fucose synthetase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	pseudogene	3459703	3460825	.	-	.	ID=gene3053;Name=gmd;gbkey=Gene;gene=gmd;gene_biotype=pseudogene;locus_tag=YPO3102;pseudo=true
AL590842.1	EMBL	CDS	3459703	3460825	.	-	0	ID=cds3010;Parent=gene3053;Note=Similar to Yersinia enterocolitica probable GDP-mannose 4%2C6-dehydratase Gmd SW:GM4D_YEREN (Q56872) (372 aa) fasta scores: E(): 0%2C 88.9%25 id in 371 aa%2C and to Yersinia pseudotuberculosis GDP-mannose-4%2C6-dehydratase Gmd TR:Q9RCB3 (EMBL:AJ251712) (373 aa) fasta scores: E(): 0%2C99.7%25 id in 373 aa. There is a frameshift following codon 156. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=gmd;inference=similar to sequence:INSDC:AJ251712;product=probable GDP-mannose 4%2C6-dehydratase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	3460841	3461854	.	-	.	ID=gene3054;Name=wbyK;gbkey=Gene;gene=wbyK;gene_biotype=protein_coding;locus_tag=YPO3104
AL590842.1	EMBL	CDS	3460841	3461854	.	-	0	ID=cds3011;Parent=gene3054;Dbxref=GOA:Q9RCC6,InterPro:IPR001296,InterPro:IPR028098,UniProtKB/TrEMBL:Q9RCC6,NCBI_GP:CAL21702.1;Name=CAL21702.1;Note=Identical to to the previously sequenced Yersinia pestis mannosyltransferase-like protein WbyK TR:Q9RCC6 (EMBL:AJ251713) (337 aa) fasta scores: E(): 0%2C 100.0%25 id in 337 aa%2C and similar to Yersinia pseudotuberculosis mannosyltransferase-like protein WbyK TR:Q9RCB4 (EMBL:AJ251712) (337 aa) fasta scores: E(): 0%2C 99.7%25 id in 337 aa;gbkey=CDS;gene=wbyK;inference=similar to sequence:INSDC:AJ251713;product=putative mannosyltransferase;protein_id=CAL21702.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3460910	3461392	.	-	.	ID=id7416;Note=Pfam match to entry PF00534 Glycos_transf_1%2CGlycosyl transferases group 1%2C score 106.00%2C E-value 2.8e-28;gbkey=misc_feature;gene=wbyK;inference=protein motif:PF00534
AL590842.1	EMBL	pseudogene	3462103	3463324	.	-	.	ID=gene3055;Name=wzy;gbkey=Gene;gene=wzy;gene_biotype=pseudogene;locus_tag=YPO3105;pseudo=true
AL590842.1	EMBL	CDS	3462103	3463324	.	-	0	ID=cds3012;Parent=gene3055;Note=Identical to Yersinia pseudotuberculosis O-unit polymerase-like protein Wzy TR:Q9RCB5 (EMBL:AJ251712) (406 aa) fasta scores: E(): 0%2C 100.0%25 id in 406 aa. There is a frameshift following codon 145. Frameshift occurs within a homopolymeric tract of 9T. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=wzy;inference=similar to sequence:INSDC:AJ251712;product=putative O-unit polymerase protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	3462136	3462201	.	-	.	ID=id7417;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=wzy;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3462217	3462267	.	-	.	ID=id7418;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=wzy;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3462289	3462354	.	-	.	ID=id7419;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=wzy;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3462691	3462756	.	-	.	ID=id7420;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=wzy;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3462796	3462852	.	-	.	ID=id7421;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=wzy;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3462917	3462979	.	-	.	ID=id7422;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=wzy;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3463025	3463090	.	-	.	ID=id7423;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=wzy;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3463127	3463192	.	-	.	ID=id7424;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=wzy;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3463238	3463303	.	-	.	ID=id7425;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=wzy;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3463256	3463288	.	-	.	ID=id7426;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=wzy;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	3463321	3464463	.	-	.	ID=gene3056;Name=wbyJ;gbkey=Gene;gene=wbyJ;gene_biotype=protein_coding;locus_tag=YPO3107
AL590842.1	EMBL	CDS	3463321	3464463	.	-	0	ID=cds3013;Parent=gene3056;Dbxref=GOA:Q7CK06,UniProtKB/TrEMBL:Q7CK06,NCBI_GP:CAL21704.1;Name=CAL21704.1;Note=Similar to Yersinia pseudotuberculosis putative mannosyltransferase WbyJ TR:Q9R3Y6 (EMBL:AJ251712) (380 aa) fasta scores: E(): 0%2C 99.7%25 id in 380 aa;gbkey=CDS;gene=wbyJ;inference=similar to sequence:INSDC:AJ251712;product=putative mannosyltransferase;protein_id=CAL21704.1;transl_table=11
AL590842.1	EMBL	pseudogene	3464635	3465556	.	-	.	ID=gene3057;Name=wbyI;gbkey=Gene;gene=wbyI;gene_biotype=pseudogene;locus_tag=YPO3108;pseudo=true
AL590842.1	EMBL	CDS	3464635	3465556	.	-	0	ID=cds3014;Parent=gene3057;Note=Similar to Yersinia pseudotuberculosis glycosyltransferase-like protein WbyI TR:Q9RCB6 (EMBL:AJ251712) (327 aa) fasta scores: E(): 0%2C 92.0%25 id in 327 aa. There is a frameshift and deletion following codon 227. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=wbyI;inference=similar to sequence:INSDC:AJ251712;product=putative glycosyltransferase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	3465005	3465505	.	-	.	ID=id7427;Note=Pfam match to entry PF00535 Glycos_transf_2%2CGlycosyl transferases%2C score 26.50%2C E-value 0.00064;gbkey=misc_feature;gene=wbyI;inference=protein motif:PF00535
AL590842.1	EMBL	gene	3465567	3466910	.	-	.	ID=gene3058;Name=wzx;gbkey=Gene;gene=wzx;gene_biotype=protein_coding;locus_tag=YPO3110
AL590842.1	EMBL	CDS	3465567	3466910	.	-	0	ID=cds3015;Parent=gene3058;Dbxref=UniProtKB/TrEMBL:Q9RCC7,NCBI_GP:CAL21706.1;Name=CAL21706.1;Note=Identical to the previously sequenced Yersinia pestis O-unit flippase-like protein Wzx TR:Q9RCC7 (EMBL:AJ251713) (447 aa) fasta scores: E(): 0%2C 100.0%25 id in 447 aa%2C and similar to Yersinia pseudotuberculosis O-unit flippase-like protein Wzx TR:Q9RCB7 (EMBL:AJ251712) (447 aa) fasta scores: E(): 0%2C 90.4%25 id in 447 aa;gbkey=CDS;gene=wzx;inference=similar to sequence:INSDC:AJ251713;product=putative O-unit flippase;protein_id=CAL21706.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3465624	3465680	.	-	.	ID=id7428;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=wzx;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3465693	3465758	.	-	.	ID=id7429;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=wzx;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3465819	3465884	.	-	.	ID=id7430;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=wzx;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3465900	3465965	.	-	.	ID=id7431;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=wzx;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3466029	3466094	.	-	.	ID=id7432;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=wzx;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3466140	3466196	.	-	.	ID=id7433;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=wzx;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3466260	3466325	.	-	.	ID=id7434;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=wzx;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3466341	3466391	.	-	.	ID=id7435;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=wzx;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3466431	3466487	.	-	.	ID=id7436;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=wzx;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3466533	3466598	.	-	.	ID=id7437;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=wzx;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3466737	3466802	.	-	.	ID=id7438;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=wzx;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3466833	3466883	.	-	.	ID=id7439;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=wzx;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3466984	3468267	.	-	.	ID=gene3059;Name=wbyH;gbkey=Gene;gene=wbyH;gene_biotype=protein_coding;locus_tag=YPO3111
AL590842.1	EMBL	CDS	3466984	3468267	.	-	0	ID=cds3016;Parent=gene3059;Dbxref=UniProtKB/TrEMBL:Q9RCC8,NCBI_GP:CAL21707.1;Name=CAL21707.1;Note=Similar to Yersinia pseudotuberculosis WbyH protein TR:Q9RCB8 (EMBL:AJ251712) (427 aa) fasta scores: E(): 0%2C99.1%25 id in 427 aa%2C and identical to the previously sequenced Yersinia pestis WbyH protein TR:Q9RCC8 (EMBL:AJ251713) (427 aa) fasta scores: E(): 0%2C 100.0%25 id in 427 aa;gbkey=CDS;gene=wbyH;inference=similar to sequence:INSDC:AJ251713;product=putative exported protein;protein_id=CAL21707.1;transl_table=11
AL590842.1	EMBL	gene	3468268	3469125	.	-	.	ID=gene3060;Name=prt;gbkey=Gene;gene=prt;gene_biotype=protein_coding;gene_synonym=rfbS;locus_tag=YPO3112
AL590842.1	EMBL	CDS	3468268	3469125	.	-	0	ID=cds3017;Parent=gene3060;Dbxref=GOA:Q9RCC9,InterPro:IPR001509,InterPro:IPR016040,UniProtKB/TrEMBL:Q9RCC9,NCBI_GP:CAL21708.1;Name=CAL21708.1;Note=Similar to Salmonella typhi paratose synthase RfbS SW:RFBS_SALTI (P14168) (279 aa) fasta scores: E(): 0%2C 43.9%25 id in 280 aa%2C and to Yersinia pseudotuberculosis CDP-paratose synthetase RfbS or Prt TR:Q56946 (EMBL:U29692) (285 aa) fasta scores: E(): 0%2C 99.3%25 id in 285 aa%2C and identical to the previously sequenced Yersinia pestis CDP-paratose synthetase Prt TR:Q9RCC9 (EMBL:AJ251713) (285 aa) fasta scores: E(): 0%2C 100.0%25 id in 285 aa;gbkey=CDS;gene=prt;inference=similar to sequence:INSDC:U29692;product=paratose synthase;protein_id=CAL21708.1;transl_table=11
AL590842.1	EMBL	gene	3469162	3470475	.	-	.	ID=gene3061;Name=ddhC;gbkey=Gene;gene=ddhC;gene_biotype=protein_coding;locus_tag=YPO3113
AL590842.1	EMBL	CDS	3469162	3470475	.	-	0	ID=cds3018;Parent=gene3061;Dbxref=GOA:Q9RCD0,InterPro:IPR000653,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q9RCD0,NCBI_GP:CAL21709.1;Name=CAL21709.1;Note=Identical to the previously sequenced Yersinia pestis CDP-4-keto-6-deoxy-D-glucose-3-dehydratase DdhC TR:Q9RCD0 (EMBL:AJ251713) (437 aa) fasta scores: E(): 0%2C100.0%25 id in 437 aa%2C and similar to Yersinia pseudotuberculosis CDP-4-keto-6-deoxy-D-glucose-3-dehydrase DdhC TR:Q05341 (EMBL:L01777) (437 aa) fasta scores: E(): 0%2C99.8%25 id in 437 aa;gbkey=CDS;gene=ddhC;inference=similar to sequence:INSDC:L01777;product=putative CDP-4-keto-6-deoxy-D-glucose-3-dehydratase;protein_id=CAL21709.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3469186	3470358	.	-	.	ID=id7440;Note=Pfam match to entry PF01041 DegT_DnrJ_EryC1%2CDegT/DnrJ/EryC1/StrS family%2C score 580.00%2C E-value 1.5e-170;gbkey=misc_feature;gene=ddhC;inference=protein motif:PF01041
AL590842.1	EMBL	pseudogene	3470493	3471568	.	-	.	ID=gene3062;Name=ascB;gbkey=Gene;gene=ascB;gene_biotype=pseudogene;gene_synonym=ddhB,rfbG;locus_tag=YPO3114;pseudo=true
AL590842.1	EMBL	CDS	3470493	3471568	.	-	0	ID=cds3019;Parent=gene3062;Note=Similar to Yersinia pseudotuberculosis CDP-D-glucose-4%2C6-dehydratase AscB or DdhB TR:Q57329 (EMBL:L33181) (357 aa) fasta scores: E(): 0%2C 99.2%25 id in 358 aa%2C and to Yersinia enterocolitica CDP-glucose 4%2C6-dehydratase ddhb or RfbG TR:Q56861 (EMBL:U46859) (358 aa) fasta scores: E(): 0%2C 77.7%25 id in 359 aa. There is a frameshift following codon 41. The frameshift occurs within a Homopolymeric tract of 11C. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=ascB;inference=similar to sequence:INSDC:U46859;product=CDP-D-glucose-4%2C6-dehydratase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	3471573	3472358	.	-	.	ID=gene3063;Name=ddhA;gbkey=Gene;gene=ddhA;gene_biotype=protein_coding;gene_synonym=rfbF;locus_tag=YPO3115
AL590842.1	EMBL	CDS	3471573	3472358	.	-	0	ID=cds3020;Parent=gene3063;Dbxref=GOA:Q7CK09,InterPro:IPR005835,InterPro:IPR013446,InterPro:IPR029044,UniProtKB/TrEMBL:Q7CK09,NCBI_GP:CAL21711.1;Name=CAL21711.1;Note=Similar to Yersinia enterocolitica glucose-1-phosphate cytidylyltransferase DdhA or RfbF TR:Q56860 (EMBL:U46859) (261 aa) fasta scores: E(): 0%2C90.4%25 id in 261 aa%2C and identical to Yersinia pseudotuberculosis glucose-1-phosphate cytidylyltransferase RfbF or DdhA TR:Q05339 (EMBL:L01777) (261 aa) fasta scores: E(): 0%2C 100.0%25 id in 261 aa;gbkey=CDS;gene=ddhA;inference=similar to sequence:INSDC:U46859;product=glucose-1-phosphate cytidylyltransferase;protein_id=CAL21711.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3471600	3472343	.	-	.	ID=id7441;Note=Pfam match to entry PF00483 NTP_transferase%2CNucleotidyl transferase%2C score -9.50%2C E-value 4.8e-07;gbkey=misc_feature;gene=ddhA;inference=protein motif:PF00483
AL590842.1	EMBL	gene	3472384	3473373	.	-	.	ID=gene3064;Name=ascD;gbkey=Gene;gene=ascD;gene_biotype=protein_coding;gene_synonym=ddhD,rfbI;locus_tag=YPO3116
AL590842.1	EMBL	CDS	3472384	3473373	.	-	0	ID=cds3021;Parent=gene3064;Dbxref=GOA:P68641,InterPro:IPR001041,InterPro:IPR001221,InterPro:IPR001433,InterPro:IPR006058,InterPro:IPR008333,InterPro:IPR012675,InterPro:IPR017927,InterPro:IPR017938,NCBI_GP:CAL21712.1;Name=CAL21712.1;Note=Identical to Yersinia pseudotuberculosis CDP-6-deoxy-delta-3%2C4-glucoseen reductase AscD or RfbI SW:ASCD_YERPS (P37911) (328 aa) fasta scores: E(): 0%2C100.0%25 id in 328 aa%2C and to the previously sequenced Yersinia pestis CDP-6-deoxy-delta-3%2C4-glucoseen reductase DdhD TR:CAB63270 (EMBL:AJ251713) (329 aa) fasta scores: E(): 0%2C 100.0%25 id in 329 aa;gbkey=CDS;gene=ascD;inference=similar to sequence:INSDC:AJ251713;product=cdp-6-deoxy-delta-3%2C4-glucoseen reductase;protein_id=CAL21712.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3472447	3472776	.	-	.	ID=id7442;Note=Pfam match to entry PF00175 oxidored_fad%2COxidoreductase FAD/NAD-binding domain%2C score 129.10%2CE-value 7.9e-35;gbkey=misc_feature;gene=ascD;inference=protein motif:PF00175
AL590842.1	EMBL	sequence_feature	3473131	3473361	.	-	.	ID=id7443;Note=Pfam match to entry PF00111 fer2%2C 2Fe-2S iron-sulfur cluster binding domains%2C score 54.70%2C E-value 2e-12;gbkey=misc_feature;gene=ascD;inference=protein motif:PF00111
AL590842.1	EMBL	sequence_feature	3473239	3473265	.	-	.	ID=id7444;Note=PS00197 2Fe-2S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;gene=ascD;inference=protein motif:ProSite:PS00197
AL590842.1	EMBL	gene	3473971	3474933	.	-	.	ID=gene3065;Name=hemH;gbkey=Gene;gene=hemH;gene_biotype=protein_coding;gene_synonym=popA,visA;locus_tag=YPO3117
AL590842.1	EMBL	CDS	3473971	3474933	.	-	0	ID=cds3022;Parent=gene3065;Dbxref=GOA:Q8ZC98,InterPro:IPR001015,InterPro:IPR019772,NCBI_GP:CAL21713.1;Name=CAL21713.1;Note=Similar to Escherichia coli ferrochelatase HemH or PopA or VisA SW:HEMZ_ECOLI (P23871) (320 aa) fasta scores: E(): 0%2C 67.4%25 id in 316 aa%2C and to Yersinia enterocolitica ferrochelatase HemH SW:HEMZ_YEREN (P43413) (308 aa) fasta scores: E(): 0%2C 90.6%25 id in 307 aa;gbkey=CDS;gene=hemH;product=ferrochelatase;protein_id=CAL21713.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3473974	3474921	.	-	.	ID=id7445;Note=Pfam match to entry PF00762 Ferrochelatase%2CFerrochelatase%2C score 461.10%2C E-value 9e-135;gbkey=misc_feature;gene=hemH;inference=protein motif:PF00762
AL590842.1	EMBL	sequence_feature	3474313	3474369	.	-	.	ID=id7446;Note=PS00534 Ferrochelatase signature.;gbkey=misc_feature;gene=hemH;inference=protein motif:ProSite:PS00534
AL590842.1	EMBL	gene	3475023	3475667	.	-	.	ID=gene3066;Name=adk;gbkey=Gene;gene=adk;gene_biotype=protein_coding;gene_synonym=dnaW,plsA;locus_tag=YPO3118
AL590842.1	EMBL	CDS	3475023	3475667	.	-	0	ID=cds3023;Parent=gene3066;Dbxref=GOA:O69172,InterPro:IPR000850,InterPro:IPR006259,InterPro:IPR007862,InterPro:IPR027417,NCBI_GP:CAL21714.1;Name=CAL21714.1;Note=Identical to the previously sequenced Yersinia pestis adenylate kinase Adk SW:KAD_YERPE (O69172) (214 aa) fasta scores: E(): 0%2C 100.0%25 id in 214 aa%2C and similar to Escherichia coli adenylate kinase Adk or PlsA or DnaW SW:KAD_ECOLI (P05082) (214 aa) fasta scores: E(): 0%2C 87.4%25 id in 214 aa;gbkey=CDS;gene=adk;product=adenylate kinase;protein_id=CAL21714.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3475107	3475655	.	-	.	ID=id7447;Note=Pfam match to entry PF00406 adenylatekinase%2CAdenylate kinase%2C score 420.50%2C E-value 1.5e-122;gbkey=misc_feature;gene=adk;inference=protein motif:PF00406
AL590842.1	EMBL	sequence_feature	3475392	3475427	.	-	.	ID=id7448;Note=PS00113 Adenylate kinase signature.;gbkey=misc_feature;gene=adk;inference=protein motif:ProSite:PS00113
AL590842.1	EMBL	gene	3475894	3477768	.	-	.	ID=gene3067;Name=htpG;gbkey=Gene;gene=htpG;gene_biotype=protein_coding;locus_tag=YPO3119
AL590842.1	EMBL	CDS	3475894	3477768	.	-	0	ID=cds3024;Parent=gene3067;Dbxref=GOA:P58482,InterPro:IPR001404,InterPro:IPR003594,InterPro:IPR019805,InterPro:IPR020568,InterPro:IPR020575,NCBI_GP:CAL21715.1;Name=CAL21715.1;Note=Similar to Escherichia coli heat shock protein HtpG SW:HTPG_ECOLI (P10413) (624 aa) fasta scores: E(): 0%2C 86.4%25 id in 624 aa%2C and to Actinobacillus actinomycetemcomitans (Haemophilus actinomycetemcomitans) heat shock protein HtpG SW:HTPG_ACTAC (P54649) (626 aa) fasta scores: E(): 0%2C 76.7%25 id in 621 aa;gbkey=CDS;gene=htpG;product=heat shock protein HtpG;protein_id=CAL21715.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3475903	3477099	.	-	.	ID=id7449;Note=Pfam match to entry PF00183 HSP90%2C Hsp90 protein%2Cscore 776.40%2C E-value 1.2e-229;gbkey=misc_feature;gene=htpG;inference=protein motif:PF00183
AL590842.1	EMBL	sequence_feature	3477112	3477756	.	-	.	ID=id7450;Note=Pfam match to entry PF00183 HSP90%2C Hsp90 protein%2Cscore 465.00%2C E-value 6.3e-136;gbkey=misc_feature;gene=htpG;inference=protein motif:PF00183
AL590842.1	EMBL	sequence_feature	3477661	3477690	.	-	.	ID=id7451;Note=PS00298 Heat shock hsp90 proteins family signature.;gbkey=misc_feature;gene=htpG;inference=protein motif:ProSite:PS00298
AL590842.1	EMBL	gene	3477960	3478565	.	-	.	ID=gene3068;Name=recR;gbkey=Gene;gene=recR;gene_biotype=protein_coding;locus_tag=YPO3120
AL590842.1	EMBL	CDS	3477960	3478565	.	-	0	ID=cds3025;Parent=gene3068;Dbxref=GOA:Q8ZC97,InterPro:IPR000093,InterPro:IPR006171,InterPro:IPR015967,InterPro:IPR023627,InterPro:IPR023628,NCBI_GP:CAL21716.1;Name=CAL21716.1;Note=Similar to Escherichia coli recombination protein RecR SW:RECR_ECOLI (P12727) (201 aa) fasta scores: E(): 0%2C85.6%25 id in 201 aa%2C and to Haemophilus influenzae recombination protein RecR or Hi0443 SW:RECR_HAEIN (P44712) (200 aa) fasta scores: E(): 0%2C 75.4%25 id in 199 aa;gbkey=CDS;gene=recR;product=recombination protein RecR;protein_id=CAL21716.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3478044	3478325	.	-	.	ID=id7452;Note=Pfam match to entry PF01751 Toprim%2C Toprim domain%2Cscore 69.20%2C E-value 9e-17;gbkey=misc_feature;gene=recR;inference=protein motif:PF01751
AL590842.1	EMBL	sequence_feature	3478329	3478454	.	-	.	ID=id7453;Note=Pfam match to entry PF02132 RecR%2C RecR protein%2Cscore 72.80%2C E-value 7e-18;gbkey=misc_feature;gene=recR;inference=protein motif:PF02132
AL590842.1	EMBL	sequence_feature	3478335	3478397	.	-	.	ID=id7454;Note=PS01300 RecR protein signature.;gbkey=misc_feature;gene=recR;inference=protein motif:ProSite:PS01300
AL590842.1	EMBL	gene	3478565	3478897	.	-	.	ID=gene3069;Name=YPO3121;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3121
AL590842.1	EMBL	CDS	3478565	3478897	.	-	0	ID=cds3026;Parent=gene3069;Dbxref=GOA:Q8ZC96,InterPro:IPR004401,NCBI_GP:CAL21717.1;Name=CAL21717.1;Note=Similar to Escherichia coli hypothetical protein YbaB SW:YBAB_ECOLI (P17577) (109 aa) fasta scores: E(): 0%2C91.8%25 id in 110 aa%2C and to Haemophilus influenzae hypothetical protein HI0442 SW:YBAB_HAEIN (P44711) (109 aa) fasta scores: E(): 1.3e-31%2C 81.8%25 id in 110 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21717.1;transl_table=11
AL590842.1	EMBL	gene	3478953	3480929	.	-	.	ID=gene3070;Name=dnaX;gbkey=Gene;gene=dnaX;gene_biotype=protein_coding;gene_synonym=dnaZ,dnaZX;locus_tag=YPO3122
AL590842.1	EMBL	CDS	3478953	3480929	.	-	0	ID=cds3027;Parent=gene3070;Dbxref=GOA:Q7CK10,InterPro:IPR001270,InterPro:IPR003593,InterPro:IPR008921,InterPro:IPR012763,InterPro:IPR021029,InterPro:IPR022001,InterPro:IPR022754,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CK10,NCBI_GP:CAL21718.1;Name=CAL21718.1;Note=Similar to Escherichia coli DNA polymerase III subunit Tau (contains DNA polymerase III subunit Gamma) DnaX or DnaZ or DnaZX SW:DP3X_ECOLI (P06710) (643 aa) fasta scores: E(): 0%2C 73.5%25 id in 660 aa;gbkey=CDS;gene=dnaX;product=DNA polymerase III subunit Tau (contains DNA polymerase III subunit Gamma);protein_id=CAL21718.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3480240	3480812	.	-	.	ID=id7455;Note=Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA)%2C score 43.80%2CE-value 3.9e-09;gbkey=misc_feature;gene=dnaX;inference=protein motif:PF00004
AL590842.1	EMBL	sequence_feature	3480774	3480797	.	-	.	ID=id7456;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=dnaX;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3481585	3482148	.	-	.	ID=gene3071;Name=apt;gbkey=Gene;gene=apt;gene_biotype=protein_coding;locus_tag=YPO3123
AL590842.1	EMBL	CDS	3481585	3482148	.	-	0	ID=cds3028;Parent=gene3071;Dbxref=GOA:Q8ZC94,InterPro:IPR000836,InterPro:IPR005764,InterPro:IPR029057,NCBI_GP:CAL21719.1;Name=CAL21719.1;Note=Similar to Escherichia coli adenine phosphoribosyltransferase Apt SW:APT_ECOLI (P07672) (183 aa) fasta scores: E(): 0%2C 80.2%25 id in 182 aa%2C and to Vibrio cholerae adenine phosphoribosyltransferase Vc1053 TR:Q9KT52 (EMBL:AE004187) (181 aa) fasta scores: E(): 0%2C 74.4%25 id in 180 aa;gbkey=CDS;gene=apt;inference=similar to sequence:INSDC:AE004187;product=adenine phosphoribosyltransferase;protein_id=CAL21719.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3481594	3482061	.	-	.	ID=id7457;Note=Pfam match to entry PF00156 Pribosyltran%2CPhosphoribosyl transferase domain%2C score 182.70%2C E-value 5.7e-51;gbkey=misc_feature;gene=apt;inference=protein motif:PF00156
AL590842.1	EMBL	sequence_feature	3481735	3481773	.	-	.	ID=id7458;Note=PS00103 Purine/pyrimidine phosphoribosyl transferases signature.;gbkey=misc_feature;gene=apt;inference=protein motif:ProSite:PS00103
AL590842.1	EMBL	repeat_region	3482499	3484450	.	-	.	ID=id7459;Note=truncated insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	3482499	3482526	.	+	.	ID=id7460;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	pseudogene	3482565	3484364	.	-	.	ID=gene3072;Name=YPO3125;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO3125;pseudo=true
AL590842.1	EMBL	CDS	3482565	3484364	.	-	0	ID=cds3029;Parent=gene3072;Dbxref=PSEUDO:CAL21720.1;Note=A fusion of the two CDS carried on IS100. The N-terminus is similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 8.8e-25%2C 34.1%25 id in 308 aa and the C-terminus is similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa.;gbkey=CDS;product=insertion sequence IS100%2C transposase and ATP-binding fusion protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	3482640	3483179	.	-	.	ID=id7461;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	3482997	3483020	.	-	.	ID=id7462;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3483486	3484019	.	-	.	ID=id7463;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;inference=protein motif:PF00665
AL590842.1	EMBL	sequence_feature	3484248	3484313	.	-	.	ID=id7464;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature
AL590842.1	EMBL	sequence_feature	3484257	3484340	.	-	.	ID=id7465;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;inference=protein motif:PF00239
AL590842.1	EMBL	INVERTED	3484423	3484450	.	-	.	ID=id7466;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	pseudogene	3484455	3484724	.	-	.	ID=gene3073;Name=ybaN;gbkey=Gene;gene=ybaN;gene_biotype=pseudogene;locus_tag=YPO3126;pseudo=true
AL590842.1	EMBL	CDS	3484455	3484724	.	-	0	ID=cds3030;Parent=gene3073;Note=This CDS is disrupted by the insertion of a truncated IS100 element and lacks 35 aa at the C-terminus. It is not clear whether this insertion affects the function of the protein. Similar to Escherichia coli hypothetical 14.8 kDa protein in priC-apt intergenic region YbaN SW:YBAN_ECOLI (P45808) (125 aa) fasta scores: E(): 1.2e-28%2C75.6%25 id in 90 aa%2C and to Vibrio cholerae hypothetical protein Vc1052 TR:Q9KT53 (EMBL:AE004187) (132 aa) fasta scores: E(): 3.1e-15%2C 47.8%25 id in 90 aa;gbkey=CDS;gene=ybaN;inference=similar to sequence:INSDC:AE004187;product=putative exported protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	3484925	3485461	.	+	.	ID=gene3074;Name=priC;gbkey=Gene;gene=priC;gene_biotype=protein_coding;locus_tag=YPO3127
AL590842.1	EMBL	CDS	3484925	3485461	.	+	0	ID=cds3031;Parent=gene3074;Dbxref=InterPro:IPR010890,UniProtKB/TrEMBL:Q7CK11,NCBI_GP:CAL21722.1;Name=CAL21722.1;Note=Similar to Escherichia coli primosomal replication protein n'' PriC SW:PRIC_ECOLI (P23862) (174 aa) fasta scores: E(): 1.5e-15%2C 36.8%25 id in 171 aa%2C and to Vibrio cholerae primosomal replication protein n'' Vc1857 TR:Q9KQZ0 (EMBL:AE004261) (187 aa) fasta scores: E(): 2.4e-12%2C 32.0%25 id in 181 aa;gbkey=CDS;gene=priC;inference=similar to sequence:INSDC:AE004261;product=primosomal replication protein n'';protein_id=CAL21722.1;transl_table=11
AL590842.1	EMBL	gene	3485632	3485787	.	+	.	ID=gene3075;Name=YPO3128;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3128
AL590842.1	EMBL	CDS	3485632	3485787	.	+	0	ID=cds3032;Parent=gene3075;Dbxref=InterPro:IPR019630,UniProtKB/TrEMBL:Q0WCF5,NCBI_GP:CAL21723.1;Name=CAL21723.1;Note=Similar to Escherichia coli hypothetical protein YbaM SW:YBAM_ECOLI (P45807) (53 aa) fasta scores: E(): 9.5e-07%2C 53.8%25 id in 52 aa%2C and to Vibrio cholerae hypothetical protein VC1858 TR:Q9KQY9 (EMBL:AE004261) (70 aa) fasta scores: E(): 8.7e-06%2C 51.1%25 id in 45 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004261;product=conserved hypothetical protein;protein_id=CAL21723.1;transl_table=11
AL590842.1	EMBL	gene	3486127	3489546	.	-	.	ID=gene3076;Name=aefA;gbkey=Gene;gene=aefA;gene_biotype=protein_coding;gene_synonym=kefA;locus_tag=YPO3129
AL590842.1	EMBL	CDS	3486127	3489546	.	-	0	ID=cds3033;Parent=gene3076;Dbxref=GOA:Q7CK12,InterPro:IPR006685,InterPro:IPR006686,InterPro:IPR010920,InterPro:IPR011014,InterPro:IPR011066,InterPro:IPR024393,InterPro:IPR025692,UniProtKB/TrEMBL:Q7CK12,NCBI_GP:CAL21724.1;Name=CAL21724.1;Note=Similar to Escherichia coli potassium efflux system KefA or AefA SW:KEFA_ECOLI (P77338) (1120 aa) fasta scores: E(): 0%2C 59.3%25 id in 1112 aa;gbkey=CDS;gene=aefA;inference=protein motif:TMHMM:2.0;product=putative potassium efflux system;protein_id=CAL21724.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3486259	3486864	.	-	.	ID=id7467;Note=Pfam match to entry PF00924 UPF0003%2C Uncharacterized protein family UPF0003%2C score 270.10%2C E-value 2.9e-77;gbkey=misc_feature;gene=aefA;inference=protein motif:PF00924
AL590842.1	EMBL	sequence_feature	3486541	3486645	.	-	.	ID=id7468;Note=PS01246 Uncharacterized protein family UPF0003 signature.;gbkey=misc_feature;gene=aefA;inference=protein motif:ProSite:PS01246
AL590842.1	EMBL	sequence_feature	3486703	3486768	.	-	.	ID=id7469;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aefA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3486814	3486879	.	-	.	ID=id7470;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aefA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3486943	3487008	.	-	.	ID=id7471;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aefA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3487069	3487134	.	-	.	ID=id7472;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aefA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3487276	3487332	.	-	.	ID=id7473;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aefA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3487378	3487443	.	-	.	ID=id7474;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aefA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3487483	3487548	.	-	.	ID=id7475;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aefA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3487579	3487629	.	-	.	ID=id7476;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aefA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3487687	3487752	.	-	.	ID=id7477;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aefA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3487798	3487863	.	-	.	ID=id7478;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aefA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3487960	3488025	.	-	.	ID=id7479;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aefA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3489418	3489483	.	-	.	ID=id7480;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aefA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3489786	3490139	.	-	.	ID=gene3077;Name=YPO3130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3130
AL590842.1	EMBL	CDS	3489786	3490139	.	-	0	ID=cds3034;Parent=gene3077;Dbxref=InterPro:IPR003787,InterPro:IPR027396,UniProtKB/TrEMBL:Q7CK13,NCBI_GP:CAL21725.1;Name=CAL21725.1;Note=Similar to Klebsiella pneumoniae YchN protein TR:Q9RLW1 (EMBL:L27824) (117 aa) fasta scores: E(): 0%2C80.3%25 id in 117 aa%2C and to Escherichia coli hypothetical protein YchN SW:YCHN_ECOLI (P39164) (117 aa) fasta scores: E(): 0%2C 77.8%25 id in 117 aa;gbkey=CDS;inference=similar to sequence:INSDC:L27824;product=conserved hypothetical protein;protein_id=CAL21725.1;transl_table=11
AL590842.1	EMBL	gene	3490152	3490808	.	-	.	ID=gene3078;Name=acrR;gbkey=Gene;gene=acrR;gene_biotype=protein_coding;locus_tag=YPO3131
AL590842.1	EMBL	CDS	3490152	3490808	.	-	0	ID=cds3035;Parent=gene3078;Dbxref=GOA:Q7CK14,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR011075,InterPro:IPR013572,InterPro:IPR015893,InterPro:IPR023772,UniProtKB/TrEMBL:Q7CK14,NCBI_GP:CAL21726.1;Name=CAL21726.1;Note=Similar to Escherichia coli potential acrAB operon repressor AcrR SW:ACRR_ECOLI (P34000) (215 aa) fasta scores: E(): 0%2C 64.3%25 id in 210 aa%2C and to Pseudomonas putida ArpR arpR TR:Q9KJC4 (EMBL:AF183959) (210 aa) fasta scores: E(): 7.5e-28%2C 39.7%25 id in 209 aa;gbkey=CDS;gene=acrR;inference=similar to sequence:INSDC:AF183959;product=putative tetR-family transcriptional regulatory protein;protein_id=CAL21726.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3490623	3490763	.	-	.	ID=id7481;Note=Pfam match to entry PF00440 tetR%2C Bacterial regulatory proteins%2C tetR family%2C score 74.70%2C E-value 2e-18;gbkey=misc_feature;gene=acrR;inference=protein motif:PF00440
AL590842.1	EMBL	sequence_feature	3490635	3490727	.	-	.	ID=id7482;Note=PS01081 Bacterial regulatory proteins%2C tetR family signature.;gbkey=misc_feature;gene=acrR;inference=protein motif:ProSite:PS01081
AL590842.1	EMBL	sequence_feature	3490650	3490715	.	-	.	ID=id7483;Note=Predicted helix-turn-helix motif with score 2223 (+6.76 SD) at aa 32-53%2C sequence TSLTDIAIAAGVTRGAIYWHFK;gbkey=misc_feature;gene=acrR
AL590842.1	EMBL	gene	3490953	3492140	.	+	.	ID=gene3079;Name=acrA;gbkey=Gene;gene=acrA;gene_biotype=protein_coding;gene_synonym=mtcA;locus_tag=YPO3132
AL590842.1	EMBL	CDS	3490953	3492140	.	+	0	ID=cds3036;Parent=gene3079;Dbxref=GOA:Q7CK15,InterPro:IPR006143,UniProtKB/TrEMBL:Q7CK15,NCBI_GP:CAL21727.1;Name=CAL21727.1;Note=Similar to Escherichia coli acriflavin resistance protein A precursor AcrA or MtcA or Lir SW:ACRA_ECOLI (P31223) (397 aa) fasta scores: E(): 0%2C 73.2%25 id in 396 aa. Similar to YPO3483 (50.0%25 identity in 372 aa overlap);gbkey=CDS;gene=acrA;product=multidrug efflux protein;protein_id=CAL21727.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3490995	3491027	.	+	.	ID=id7484;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=acrA;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	3491145	3492038	.	+	.	ID=id7485;Note=Pfam match to entry PF00529 HlyD%2C HlyD family secretion protein%2C score 287.10%2C E-value 2.3e-82;gbkey=misc_feature;gene=acrA;inference=protein motif:PF00529
AL590842.1	EMBL	gene	3492157	3495309	.	+	.	ID=gene3080;Name=acrB;gbkey=Gene;gene=acrB;gene_biotype=protein_coding;gene_synonym=acrE;locus_tag=YPO3133
AL590842.1	EMBL	CDS	3492157	3495309	.	+	0	ID=cds3037;Parent=gene3080;Dbxref=GOA:Q7CK16,InterPro:IPR001036,InterPro:IPR004764,InterPro:IPR027463,UniProtKB/TrEMBL:Q7CK16,NCBI_GP:CAL21728.1;Name=CAL21728.1;Note=Similar to Escherichia coli acriflavin resistance protein B AcrB or AcrE SW:ACRB_ECOLI (P31224) (1049 aa) fasta scores: E(): 0%2C 84.1%25 id in 1047 aa%2C and to Pseudomonas aeruginosa multidrug resistance protein mMxB or Pa0426 SW:MEXB_PSEAE (P52002) (1046 aa) fasta scores: E(): 0%2C 68.3%25 id in 1033 aa. Similar to YPO3043 (66.5%25 identity in 1032 aa overlap) and to YPO3482 (57.8%25 identity in 1044 aa overlap);gbkey=CDS;gene=acrB;inference=protein motif:TMHMM:2.0;product=multidrug efflux protein;protein_id=CAL21728.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3492157	3495243	.	+	.	ID=id7486;Note=Pfam match to entry PF00873 ACR_tran%2C AcrB/AcrD/AcrF family%2C score 1992.30%2C E-value 0;gbkey=misc_feature;gene=acrB;inference=protein motif:PF00873
AL590842.1	EMBL	sequence_feature	3492184	3492252	.	+	.	ID=id7487;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=acrB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3493174	3493233	.	+	.	ID=id7488;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=acrB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3493261	3493329	.	+	.	ID=id7489;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=acrB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3493474	3493542	.	+	.	ID=id7490;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=acrB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3493570	3493638	.	+	.	ID=id7491;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=acrB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3493774	3493833	.	+	.	ID=id7492;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=acrB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3494638	3494661	.	+	.	ID=id7493;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=acrB;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3494770	3494829	.	+	.	ID=id7494;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=acrB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3494848	3494916	.	+	.	ID=id7495;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=acrB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3494929	3494997	.	+	.	ID=id7496;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=acrB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3495076	3495144	.	+	.	ID=id7497;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=acrB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3495172	3495240	.	+	.	ID=id7498;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=acrB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3495495	3495755	.	+	.	ID=gene3081;Name=ykgM;gbkey=Gene;gene=ykgM;gene_biotype=protein_coding;locus_tag=YPO3134
AL590842.1	EMBL	CDS	3495495	3495755	.	+	0	ID=cds3038;Parent=gene3081;Dbxref=GOA:P58472,InterPro:IPR002150,InterPro:IPR027493,NCBI_GP:CAL21729.1;Name=CAL21729.1;Note=Similar to Escherichia coli O157:H7 putative ribosomal protein YkgM TR:AAG54622 (EMBL:AE005206) (87 aa) fasta scores: E(): 4.1e-24%2C 69.0%25 id in 84 aa%2C and to Vibrio cholerae ribosomal protein L31P family Vc0878 TR:Q9KTM4 (EMBL:AE004172) (85 aa) fasta scores: E(): 1.4e-20%2C 62.5%25 id in 80 aa;gbkey=CDS;gene=ykgM;inference=similar to sequence:INSDC:AE005206;product=putative ribosomal protein;protein_id=CAL21729.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3495495	3495734	.	+	.	ID=id7499;Note=Pfam match to entry PF01197 Ribosomal_L31%2C Ribosomal protein L31%2C score 34.20%2C E-value 3e-06;gbkey=misc_feature;gene=ykgM;inference=protein motif:PF01197
AL590842.1	EMBL	gene	3495771	3495914	.	+	.	ID=gene3082;Name=YPO3135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3135
AL590842.1	EMBL	CDS	3495771	3495914	.	+	0	ID=cds3039;Parent=gene3082;Dbxref=GOA:Q8ZC86,InterPro:IPR000473,NCBI_GP:CAL21730.1;Name=CAL21730.1;Note=Similar to Vibrio cholerae ribosomal putative protein L36 Vc0879 TR:Q9KTM3 (EMBL:AE004172) (41 aa) fasta scores: E(): 8.8e-16%2C 87.5%25 id in 40 aa%2C and to Neisseria meningitidis (serogroup A) putative 50S ribosomal protein L36 Rpmj2 or Nma1137 or Nmb0941 TR:Q9JQV0 (EMBL:AL162755) (41 aa) fasta scores: E(): 7.6e-14%2C 82.5%25 id in 40 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL162755;product=putative ribosomal protein L36;protein_id=CAL21730.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3495771	3495893	.	+	.	ID=id7500;Note=Pfam match to entry PF00444 Ribosomal_L36%2C Ribosomal protein L36%2C score 26.80%2C E-value 1.2e-07;gbkey=misc_feature;inference=protein motif:PF00444
AL590842.1	EMBL	gene	3496788	3497141	.	+	.	ID=gene3083;Name=YPO3136;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3136
AL590842.1	EMBL	CDS	3496788	3497141	.	+	0	ID=cds3040;Parent=gene3083;Dbxref=UniProtKB/TrEMBL:Q74WQ1,NCBI_GP:CAL21731.1;Name=CAL21731.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21731.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3497127	3497138	.	+	.	ID=id7501;Note=PS00014 Endoplasmic reticulum targeting sequence.;gbkey=misc_feature;inference=protein motif:ProSite:PS00014
AL590842.1	EMBL	gene	3497300	3497668	.	+	.	ID=gene3084;Name=YPO3137;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3137
AL590842.1	EMBL	CDS	3497300	3497668	.	+	0	ID=cds3041;Parent=gene3084;Dbxref=InterPro:IPR019693,UniProtKB/TrEMBL:Q7CK17,NCBI_GP:CAL21732.1;Name=CAL21732.1;Note=Similar to Escherichia coli hypothetical protein YbaJ SW:YBAJ_ECOLI (P37611) (124 aa) fasta scores: E(): 1.4e-29%2C 65.8%25 id in 111 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21732.1;transl_table=11
AL590842.1	EMBL	gene	3497717	3497920	.	+	.	ID=gene3085;Name=ymoA;gbkey=Gene;gene=ymoA;gene_biotype=protein_coding;locus_tag=YPO3138
AL590842.1	EMBL	CDS	3497717	3497920	.	+	0	ID=cds3042;Parent=gene3085;Dbxref=GOA:P0A3X0,InterPro:IPR007985,PDB:2K5S,NCBI_GP:CAL21733.1;Name=CAL21733.1;Note=Identical to Yersinia enterocolitica modulating protein YmoA SW:YMOA_YEREN (P27720) (67 aa) fasta scores: E(): 1.1e-27%2C 100.0%25 id in 67 aa%2C and similar to Escherichia coli haemolysin expression modulating protein Hha SW:HHA_ECOLI (P23870) (72 aa) fasta scores: E(): 1e-22%2C82.1%25 id in 67 aa;gbkey=CDS;gene=ymoA;product=modulating protein YmoA (histone-like protein);protein_id=CAL21733.1;transl_table=11
AL590842.1	EMBL	gene	3498454	3498573	.	-	.	ID=gene3086;Name=ffs;gbkey=Gene;gene=ffs;gene_biotype=misc_RNA
AL590842.1	EMBL	transcript	3498454	3498573	.	-	.	ID=rna66;Parent=gene3086;Note=Similar to Escherichia coli 4.5S RNA%2C ffs%2C 85%25 identity in 103 nt overlap;gbkey=misc_RNA;gene=ffs
AL590842.1	EMBL	exon	3498454	3498573	.	-	.	ID=id7502;Parent=rna66;Note=Similar to Escherichia coli 4.5S RNA%2C ffs%2C 85%25 identity in 103 nt overlap;gbkey=misc_RNA;gene=ffs
AL590842.1	EMBL	gene	3498652	3499197	.	+	.	ID=gene3087;Name=YPO3139;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3139
AL590842.1	EMBL	CDS	3498652	3499197	.	+	0	ID=cds3043;Parent=gene3087;Dbxref=GOA:Q7CK18,InterPro:IPR011991,InterPro:IPR014048,UniProtKB/TrEMBL:Q7CK18,NCBI_GP:CAL21734.1;Name=CAL21734.1;Note=Similar to Escherichia coli hypothetical protein YbaZ SW:YBAZ_ECOLI (P75707) (129 aa) fasta scores: E(): 1.4e-25%2C 62.6%25 id in 115 aa%2C and to Vibrio cholerae methylated-DNA--protein-cysteine methyltransferase-related protein VC1065 TR:Q9KT40 (EMBL:AE004188) (100 aa) fasta scores: E(): 7.6e-17%2C 52.0%25 id in 98 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004188;product=putative 6-O-methylguanine DNA methyltransferase family protein;protein_id=CAL21734.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3498823	3499149	.	+	.	ID=id7503;Note=Pfam match to entry PF01035 Methyltransf_1%2C6-O-methylguanine DNA methyltransferase%2C score 103.50%2CE-value 4.2e-27;gbkey=misc_feature;inference=protein motif:PF01035
AL590842.1	EMBL	gene	3499333	3499854	.	-	.	ID=gene3088;Name=ybaY;gbkey=Gene;gene=ybaY;gene_biotype=protein_coding;locus_tag=YPO3140
AL590842.1	EMBL	CDS	3499333	3499854	.	-	0	ID=cds3044;Parent=gene3088;Dbxref=UniProtKB/TrEMBL:Q7CK19,NCBI_GP:CAL21735.1;Name=CAL21735.1;Note=Similar to Escherichia coli hypothetical 19.4 kDa lipoprotein in tesB-hha intergenic region precursor YbaY SW:YBAY_ECOLI (P77717) (190 aa) fasta scores: E(): 2.5e-30%2C55.7%25 id in 167 aa;gbkey=CDS;gene=ybaY;product=putative lipoprotein;protein_id=CAL21735.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3499780	3499812	.	-	.	ID=id7504;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=ybaY;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	3500111	3500971	.	+	.	ID=gene3089;Name=tesB;gbkey=Gene;gene=tesB;gene_biotype=protein_coding;locus_tag=YPO3141
AL590842.1	EMBL	CDS	3500111	3500971	.	+	0	ID=cds3045;Parent=gene3089;Dbxref=GOA:Q0WCE2,InterPro:IPR003703,InterPro:IPR025652,InterPro:IPR029069,PDB:4QFW,UniProtKB/TrEMBL:Q0WCE2,NCBI_GP:CAL21736.1;Name=CAL21736.1;Note=Similar to Escherichia coli acyl-CoA thioesterase II TesB SW:TESB_ECOLI (P23911) (285 aa) fasta scores: E(): 0%2C78.9%25 id in 284 aa%2C and to Vibrio cholerae acyl-CoA thioesterase II Vc1063 TR:Q9KT42 (EMBL:AE004187) (286 aa) fasta scores: E(): 0%2C 63.7%25 id in 284 aa;gbkey=CDS;gene=tesB;inference=similar to sequence:INSDC:AE004187;product=acyl-CoA thioesterase II;protein_id=CAL21736.1;transl_table=11
AL590842.1	EMBL	gene	3501231	3502526	.	-	.	ID=gene3090;Name=amtB;gbkey=Gene;gene=amtB;gene_biotype=protein_coding;locus_tag=YPO3142
AL590842.1	EMBL	CDS	3501231	3502526	.	-	0	ID=cds3046;Parent=gene3090;Dbxref=GOA:Q7CK20,InterPro:IPR001905,InterPro:IPR018047,InterPro:IPR024041,InterPro:IPR029020,UniProtKB/TrEMBL:Q7CK20,NCBI_GP:CAL21737.1;Name=CAL21737.1;Note=Similar to Escherichia coli probable ammonium transporter AmtB SW:AMTB_ECOLI (P37905) (428 aa) fasta scores: E(): 0%2C 79.0%25 id in 420 aa%2C and to Xylella fastidiosa ammonium transporter Xf1844 TR:Q9PCD7 (EMBL:AE004005) (492 aa) fasta scores: E(): 0%2C 60.0%25 id in 423 aa;gbkey=CDS;gene=amtB;inference=similar to sequence:INSDC:AE004005;product=probable ammonium transporter;protein_id=CAL21737.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3501240	3502421	.	-	.	ID=id7505;Note=Pfam match to entry PF00909 Ammonium_transp%2CAmmonium Transporter Family%2C score 607.90%2C E-value 6e-179;gbkey=misc_feature;gene=amtB;inference=protein motif:PF00909
AL590842.1	EMBL	sequence_feature	3501330	3501395	.	-	.	ID=id7506;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=amtB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3501441	3501506	.	-	.	ID=id7507;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=amtB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3501546	3501611	.	-	.	ID=id7508;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=amtB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3501624	3501689	.	-	.	ID=id7509;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=amtB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3501711	3501776	.	-	.	ID=id7510;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=amtB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3501807	3501863	.	-	.	ID=id7511;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=amtB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3501897	3501974	.	-	.	ID=id7512;Note=PS01219 Ammonium transporters signature.;gbkey=misc_feature;gene=amtB;inference=protein motif:ProSite:PS01219
AL590842.1	EMBL	sequence_feature	3501903	3501959	.	-	.	ID=id7513;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=amtB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3502005	3502070	.	-	.	ID=id7514;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=amtB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3502092	3502157	.	-	.	ID=id7515;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=amtB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3502242	3502307	.	-	.	ID=id7516;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=amtB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3502344	3502409	.	-	.	ID=id7517;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=amtB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3502440	3502505	.	-	.	ID=id7518;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=amtB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3502560	3502898	.	-	.	ID=gene3091;Name=glnK;gbkey=Gene;gene=glnK;gene_biotype=protein_coding;locus_tag=YPO3143
AL590842.1	EMBL	CDS	3502560	3502898	.	-	0	ID=cds3047;Parent=gene3091;Dbxref=GOA:Q7CK21,InterPro:IPR002187,InterPro:IPR002332,InterPro:IPR011322,InterPro:IPR015867,InterPro:IPR017918,UniProtKB/TrEMBL:Q7CK21,NCBI_GP:CAL21738.1;Name=CAL21738.1;Note=Similar to Escherichia coli nitrogen regulatory protein P-II GlnK SW:GLNK_ECOLI (P38504) (112 aa) fasta scores: E(): 0%2C 94.6%25 id in 112 aa%2C and to Klebsiella pneumoniae PII-like nitrogen regulatory protein GlnK TR:Q9ZA65 (EMBL:AJ006531) (112 aa) fasta scores: E(): 0%2C95.5%25 id in 112 aa;gbkey=CDS;gene=glnK;inference=similar to sequence:INSDC:AJ006531;product=nitrogen regulatory protein P-II;protein_id=CAL21738.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3502563	3502898	.	-	.	ID=id7519;Note=Pfam match to entry PF00543 P-II%2C Nitrogen regulatory protein P-II%2C score 184.00%2C E-value 3.2e-54;gbkey=misc_feature;gene=glnK;inference=protein motif:PF00543
AL590842.1	EMBL	sequence_feature	3502611	3502652	.	-	.	ID=id7520;Note=PS00638 P-II protein C-terminal region signature.;gbkey=misc_feature;gene=glnK;inference=protein motif:ProSite:PS00638
AL590842.1	EMBL	sequence_feature	3502746	3502763	.	-	.	ID=id7521;Note=PS00496 P-II protein urydylation site.;gbkey=misc_feature;gene=glnK;inference=protein motif:ProSite:PS00496
AL590842.1	EMBL	gene	3503308	3505131	.	-	.	ID=gene3092;Name=mdl;gbkey=Gene;gene=mdl;gene_biotype=protein_coding;gene_synonym=mdlB;locus_tag=YPO3144
AL590842.1	EMBL	CDS	3503308	3505131	.	-	0	ID=cds3048;Parent=gene3092;Dbxref=GOA:Q0WCD9,InterPro:IPR001140,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR011527,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WCD9,NCBI_GP:CAL21739.1;Name=CAL21739.1;Note=Similar to Escherichia coli multidrug resistance-like ATP-binding protein MdlB or Mdl SW:MDLB_ECOLI (P75706) (593 aa) fasta scores: E(): 0%2C 78.9%25 id in 583 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) multidrug resistance-like ATP-binding protein MdlB or Bu480 TR:BAB13177 (EMBL:AP001119) (590 aa) fasta scores: E(): 0%2C 56.9%25 id in 576 aa;gbkey=CDS;gene=mdl;inference=similar to sequence:INSDC:AP001119;product=probable ATP transporter (ATP-binding protein);protein_id=CAL21739.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3503482	3504033	.	-	.	ID=id7522;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 173.50%2C E-value 3.5e-48;gbkey=misc_feature;gene=mdl;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	3503659	3503703	.	-	.	ID=id7523;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=mdl;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	3503989	3504012	.	-	.	ID=id7524;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=mdl;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3504238	3505059	.	-	.	ID=id7525;Note=Pfam match to entry PF00664 ABC_membrane%2C ABC transporter transmembrane region.%2C score 106.50%2C E-value 5e-28;gbkey=misc_feature;gene=mdl;inference=protein motif:PF00664
AL590842.1	EMBL	sequence_feature	3504319	3504384	.	-	.	ID=id7526;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=mdl;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3504577	3504636	.	-	.	ID=id7527;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=mdl;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3504652	3504717	.	-	.	ID=id7528;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=mdl;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3504880	3504945	.	-	.	ID=id7529;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=mdl;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3504991	3505056	.	-	.	ID=id7530;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=mdl;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3505124	3506890	.	-	.	ID=gene3093;Name=mdl;gbkey=Gene;gene=mdl;gene_biotype=protein_coding;gene_synonym=mdlA;locus_tag=YPO3145
AL590842.1	EMBL	CDS	3505124	3506890	.	-	0	ID=cds3049;Parent=gene3093;Dbxref=GOA:Q7CK22,InterPro:IPR001140,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR011527,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CK22,NCBI_GP:CAL21740.1;Name=CAL21740.1;Note=Similar to Escherichia coli multidrug resistance-like ATP-binding protein MdlA or Mdl SW:MDLA_ECOLI (P77265) (590 aa) fasta scores: E(): 0%2C 76.1%25 id in 585 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) multidrug resistance-like ATP-binding protein MdlA or Bu479 TR:BAB13176 (EMBL:AP001119) (589 aa) fasta scores: E(): 0%2C 60.9%25 id in 588 aa;gbkey=CDS;gene=mdl;inference=similar to sequence:INSDC:AP001119;product=probable ABC transporter (ATP-binding protein);protein_id=CAL21740.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3505253	3505807	.	-	.	ID=id7531;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 172.40%2C E-value 7.5e-48;gbkey=misc_feature;gene=mdl;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	3505430	3505474	.	-	.	ID=id7532;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=mdl;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	3505763	3505786	.	-	.	ID=id7533;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=mdl;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3505991	3506056	.	-	.	ID=id7534;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=mdl;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3506018	3506839	.	-	.	ID=id7535;Note=Pfam match to entry PF00664 ABC_membrane%2C ABC transporter transmembrane region.%2C score 196.80%2C E-value 3.4e-55;gbkey=misc_feature;gene=mdl;inference=protein motif:PF00664
AL590842.1	EMBL	sequence_feature	3506087	3506152	.	-	.	ID=id7536;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=mdl;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3506357	3506422	.	-	.	ID=id7537;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=mdl;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3506438	3506503	.	-	.	ID=id7538;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=mdl;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3506660	3506725	.	-	.	ID=id7539;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=mdl;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3506765	3506830	.	-	.	ID=id7540;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=mdl;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3506992	3507453	.	-	.	ID=gene3094;Name=YPO3146;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3146
AL590842.1	EMBL	CDS	3506992	3507453	.	-	0	ID=cds3050;Parent=gene3094;Dbxref=GOA:Q7CK23,InterPro:IPR000485,InterPro:IPR011008,InterPro:IPR011991,InterPro:IPR019887,InterPro:IPR019888,UniProtKB/TrEMBL:Q7CK23,NCBI_GP:CAL21741.1;Name=CAL21741.1;Note=Similar to Zymomonas mobilis glutamate uptake regulatory protein Grp SW:GRP_ZYMMO (P74996) (164 aa) fasta scores: E(): 6.8e-27%2C 42.8%25 id in 152 aa%2C and to Escherichia coli hypothetical transcriptional regulator YbaO SW:YBAO_ECOLI (P54986) (152 aa) fasta scores: E(): 0%2C74.8%25 id in 151 aa;gbkey=CDS;product=probable AsnC-family regulatory protein;protein_id=CAL21741.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3507067	3507378	.	-	.	ID=id7541;Note=Pfam match to entry PF01037 ASNC_trans_reg%2C AsnC family%2C score 172.10%2C E-value 9.5e-48;gbkey=misc_feature;inference=protein motif:PF01037
AL590842.1	EMBL	gene	3507579	3508619	.	+	.	ID=gene3095;Name=YPO3147;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3147
AL590842.1	EMBL	CDS	3507579	3508619	.	+	0	ID=cds3051;Parent=gene3095;Dbxref=InterPro:IPR001926,UniProtKB/TrEMBL:Q7CK24,NCBI_GP:CAL21742.1;Name=CAL21742.1;Note=Similar to Emericella nidulans cysteine synthase CysB SW:CYSK_EMENI (P50867) (371 aa) fasta scores: E(): 1.2e-14%2C 26.7%25 id in 330 aa%2C and to Vibrio cholerae cysteine synthase/cystathionine beta-synthase family protein Vc1061 TR:Q9KT44 (EMBL:AE004187) (355 aa) fasta scores: E(): 0%2C 71.1%25 id in 342 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004187;product=putative Pyridoxal-phosphate dependent protein;protein_id=CAL21742.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3507624	3508523	.	+	.	ID=id7542;Note=Pfam match to entry PF00291 PALP%2CPyridoxal-phosphate dependent enzyme%2C score 182.50%2C E-value 6.7e-51;gbkey=misc_feature;inference=protein motif:PF00291
AL590842.1	EMBL	gene	3508831	3509652	.	-	.	ID=gene3096;Name=YPO3148;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3148
AL590842.1	EMBL	CDS	3508831	3509652	.	-	0	ID=cds3052;Parent=gene3096;Dbxref=GOA:Q7CK25,InterPro:IPR000150,InterPro:IPR006379,InterPro:IPR023214,InterPro:IPR023938,NCBI_GP:CAL21743.1;Name=CAL21743.1;Note=Similar to Escherichia coli hypothetical protein Cof SW:COF_ECOLI (P46891) (272 aa) fasta scores: E(): 0%2C 57.7%25 id in 272 aa%2C and to Vibrio cholerae hypothetical protein VC0134 TR:Q9KVK8 (EMBL:AE004104) (275 aa) fasta scores: E(): 0%2C 38.5%25 id in 265 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004104;product=putative haloacid dehalogenase-like hydrolase;protein_id=CAL21743.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3508906	3509643	.	-	.	ID=id7543;Note=Pfam match to entry PF00592 DUF3%2C Cof family DUF3%2Cscore 228.60%2C E-value 8.8e-65;gbkey=misc_feature;inference=protein motif:PF00592
AL590842.1	EMBL	sequence_feature	3508957	3509025	.	-	.	ID=id7544;Note=PS01229 Hypothetical cof family signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS01229
AL590842.1	EMBL	sequence_feature	3509608	3509643	.	-	.	ID=id7545;Note=PS01228 Hypothetical cof family signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS01228
AL590842.1	EMBL	gene	3509757	3511460	.	+	.	ID=gene3097;Name=YPO3149;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3149
AL590842.1	EMBL	CDS	3509757	3511460	.	+	0	ID=cds3053;Parent=gene3097;Dbxref=GOA:Q7CK26,InterPro:IPR000914,InterPro:IPR025370,UniProtKB/TrEMBL:Q7CK26,NCBI_GP:CAL21744.1;Name=CAL21744.1;Note=Similar to Escherichia coli hypothetical protein YbaE SW:YBAE_ECOLI (P46890) (566 aa) fasta scores: E(): 0%2C46.5%25 id in 563 aa%2C and to Vibrio cholerae hypothetical protein VCA0578 TR:Q9KM11 (EMBL:AE004388) (565 aa) fasta scores: E(): 0%2C 25.9%25 id in 580 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004388;product=conserved hypothetical protein;protein_id=CAL21744.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3510156	3510344	.	+	.	ID=id7546;Note=Pfam match to entry PF00496 SBP_bac_5%2C Bacterial extracellular solute-binding proteins%2C family 5%2C score 20.00%2C E-value 8.4e-05;gbkey=misc_feature;inference=protein motif:PF00496
AL590842.1	EMBL	sequence_feature	3510597	3510626	.	+	.	ID=id7547;Note=PS00142 Neutral zinc metallopeptidases%2C zinc-binding region signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00142
AL590842.1	EMBL	gene	3511725	3512423	.	+	.	ID=gene3098;Name=YPO3150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3150
AL590842.1	EMBL	CDS	3511725	3512423	.	+	0	ID=cds3054;Parent=gene3098;Dbxref=GOA:Q8ZC72,InterPro:IPR014729,InterPro:IPR018317,NCBI_GP:CAL21745.1;Name=CAL21745.1;Note=Similar to Arthrobacter viscosus aluminum resistance protein Alu1 TR:O52119 (EMBL:AF022216) (187 aa) fasta scores: E(): 0%2C 56.5%25 id in 168 aa%2C and to Escherichia coli hypothetical protein YbaX SW:YBAX_ECOLI (P77756) (231 aa) fasta scores: E(): 0%2C 80.1%25 id in 231 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF022216;product=conserved hypothetical protein;protein_id=CAL21745.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3511737	3511910	.	+	.	ID=id7548;Note=Pfam match to entry PF00764 Arginosuc_synth%2CArginosuccinate synthase%2C score 17.80%2C E-value 5.2e-05;gbkey=misc_feature;inference=protein motif:PF00764
AL590842.1	EMBL	sequence_feature	3512325	3512342	.	+	.	ID=id7549;Note=PS00190 Cytochrome c family heme-binding site signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00190
AL590842.1	EMBL	gene	3512509	3512916	.	-	.	ID=gene3099;Name=YPO3151;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3151
AL590842.1	EMBL	CDS	3512509	3512916	.	-	0	ID=cds3055;Parent=gene3099;Dbxref=GOA:Q0WCD2,InterPro:IPR006684,InterPro:IPR029069,UniProtKB/TrEMBL:Q0WCD2,NCBI_GP:CAL21746.1;Name=CAL21746.1;Note=Similar to Escherichia coli hypothetical protein YbaW SW:YBAW_ECOLI (P77712) (132 aa) fasta scores: E(): 0%2C69.5%25 id in 131 aa%2C and to Neisseria meningitidis (serogroup A) hypothetical protein NMA0492 or NMB1959 TR:Q9JR32 (EMBL:AL162753) (127 aa) fasta scores: E(): 6.4e-12%2C 36.5%25 id in 126 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL162753;product=conserved hypothetical protein;protein_id=CAL21746.1;transl_table=11
AL590842.1	EMBL	gene	3513270	3513716	.	-	.	ID=gene3100;Name=ybaV;gbkey=Gene;gene=ybaV;gene_biotype=protein_coding;locus_tag=YPO3152
AL590842.1	EMBL	CDS	3513270	3513716	.	-	0	ID=cds3056;Parent=gene3100;Dbxref=InterPro:IPR004509,InterPro:IPR010994,UniProtKB/TrEMBL:Q7CK28,NCBI_GP:CAL21747.1;Name=CAL21747.1;Note=Similar to Escherichia coli hypothetical 12.7 kDa protein in hupB-cof intergenic region YbaV SW:YBAV_ECOLI (P77415) (123 aa) fasta scores: E(): 1.3e-08%2C 41.9%25 id in 105 aa%2C and to Pseudomonas aeruginosa hypothetical protein Pa3140 TR:AAG06528 (EMBL:AE004738) (109 aa) fasta scores: E(): 1e-07%2C 44.9%25 id in 78 aa;gbkey=CDS;gene=ybaV;inference=similar to sequence:INSDC:AE004738;product=putative exported protein;protein_id=CAL21747.1;transl_table=11
AL590842.1	EMBL	gene	3513856	3515742	.	-	.	ID=gene3101;Name=ppiD;gbkey=Gene;gene=ppiD;gene_biotype=protein_coding;locus_tag=YPO3153
AL590842.1	EMBL	CDS	3513856	3515742	.	-	0	ID=cds3057;Parent=gene3101;Dbxref=GOA:Q7CK29,InterPro:IPR000297,InterPro:IPR008880,InterPro:IPR027304,UniProtKB/TrEMBL:Q7CK29,NCBI_GP:CAL21748.1;Name=CAL21748.1;Note=Similar to Escherichia coli peptidyl-prolyl cis-trans isomerase D PpiD SW:PPID_ECOLI (P77241) (623 aa) fasta scores: E(): 0%2C 58.9%25 id in 626 aa%2C and to Vibrio cholerae peptidyl-prolyl cis-trans isomerse D Vc1918 TR:Q9KQT0 (EMBL:AE004267) (619 aa) fasta scores: E(): 0%2C39.1%25 id in 619 aa;gbkey=CDS;gene=ppiD;inference=similar to sequence:INSDC:AE004267;product=peptidyl-prolyl cis-trans isomerase D;protein_id=CAL21748.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3514672	3514941	.	-	.	ID=id7550;Note=Pfam match to entry PF00639 Rotamase%2C PPIC-type PPIASE domain.%2C score 66.70%2C E-value 4.9e-16;gbkey=misc_feature;gene=ppiD;inference=protein motif:PF00639
AL590842.1	EMBL	sequence_feature	3515638	3515703	.	-	.	ID=id7551;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=ppiD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3516043	3516315	.	-	.	ID=gene3102;Name=hopD;gbkey=Gene;gene=hopD;gene_biotype=protein_coding;gene_synonym=hupB;locus_tag=YPO3154
AL590842.1	EMBL	CDS	3516043	3516315	.	-	0	ID=cds3058;Parent=gene3102;Dbxref=GOA:Q7CK30,InterPro:IPR000119,InterPro:IPR010992,InterPro:IPR020816,UniProtKB/TrEMBL:Q7CK30,NCBI_GP:CAL21749.1;Name=CAL21749.1;Note=Similar to Escherichia coli DNA-binding protein HU-beta (NS1) (HU1) HupB or HopD SW:DBHB_ECOLI (P02341) (90 aa) fasta scores: E(): 1.2e-28%2C 91.1%25 id in 90 aa%2C and to Salmonella typhimurium DNA-binding protein HU-beta HupB SW:DBHB_SALTY (P05515) (90 aa) fasta scores: E(): 3.1e-28%2C90.0%25 id in 90 aa;gbkey=CDS;gene=hopD;product=DNA-binding protein HU-beta;protein_id=CAL21749.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3516046	3516315	.	-	.	ID=id7552;Note=Pfam match to entry PF00216 Bac_DNA_binding%2CBacterial DNA-binding protein%2C score 172.30%2C E-value 1.6e-48;gbkey=misc_feature;gene=hopD;inference=protein motif:PF00216
AL590842.1	EMBL	sequence_feature	3516121	3516180	.	-	.	ID=id7553;Note=PS00045 Bacterial histone-like DNA-binding proteins signature.;gbkey=misc_feature;gene=hopD;inference=protein motif:ProSite:PS00045
AL590842.1	EMBL	gene	3516533	3518887	.	-	.	ID=gene3103;Name=capR;gbkey=Gene;gene=capR;gene_biotype=protein_coding;gene_synonym=deg,lon,lopA,muc;locus_tag=YPO3155
AL590842.1	EMBL	CDS	3516533	3518887	.	-	0	ID=cds3059;Parent=gene3103;Dbxref=GOA:Q0WCC8,InterPro:IPR003111,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR004815,InterPro:IPR008268,InterPro:IPR008269,InterPro:IPR014721,InterPro:IPR015947,InterPro:IPR020568,InterPro:IPR027065,InterPro:IPR027417,InterPro:IPR027543,UniProtKB/TrEMBL:Q0WCC8,NCBI_GP:CAL21750.1;Name=CAL21750.1;Note=Similar to Escherichia coli ATP-dependent protease La Lon or CapR or Deg or Muc or LopA SW:LON_ECOLI (P08177) (784 aa) fasta scores: E(): 0%2C 91.1%25 id in 784 aa%2C and to Erwinia amylovora ATP-dependent protease La Lon SW:LON_ERWAM (P46067) (784 aa) fasta scores: E(): 0%2C 90.2%25 id in 784 aa;gbkey=CDS;gene=capR;product=ATP-dependent protease La;protein_id=CAL21750.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3516836	3516862	.	-	.	ID=id7554;Note=PS01046 ATP-dependent serine proteases%2C lon family%2Cserine active site.;gbkey=misc_feature;gene=capR;inference=protein motif:ProSite:PS01046
AL590842.1	EMBL	sequence_feature	3517253	3517837	.	-	.	ID=id7555;Note=Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA)%2C score 149.90%2CE-value 4.5e-41;gbkey=misc_feature;gene=capR;inference=protein motif:PF00004
AL590842.1	EMBL	sequence_feature	3517799	3517822	.	-	.	ID=id7556;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=capR;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3518282	3518860	.	-	.	ID=id7557;Note=Pfam match to entry PF02190 LON%2C ATP-dependent protease La (LON) domain%2C score 253.90%2C E-value 2.2e-72;gbkey=misc_feature;gene=capR;inference=protein motif:PF02190
AL590842.1	EMBL	gene	3519082	3520353	.	-	.	ID=gene3104;Name=clpX;gbkey=Gene;gene=clpX;gene_biotype=protein_coding;gene_synonym=lopC;locus_tag=YPO3156
AL590842.1	EMBL	CDS	3519082	3520353	.	-	0	ID=cds3060;Parent=gene3104;Dbxref=GOA:Q8ZC66,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR004487,InterPro:IPR010603,InterPro:IPR019489,InterPro:IPR027417,NCBI_GP:CAL21751.1;Name=CAL21751.1;Note=Similar to Escherichia coli ATP-dependent Clp protease ATP-binding subunit ClpX or LopC SW:CLPX_ECOLI (P33138) (423 aa) fasta scores: E(): 0%2C 92.7%25 id in 423 aa%2Cand to Yersinia enterocolitica ATP-dependent clp protease ATP-binding subunit ClpX SW:CLPX_YEREN (O33873) (423 aa) fasta scores: E(): 0%2C 97.6%25 id in 423 aa;gbkey=CDS;gene=clpX;product=ATP-dependent Clp protease ATP-binding subunit ClpX;protein_id=CAL21751.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3519235	3520014	.	-	.	ID=id7558;Note=Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA)%2C score 85.30%2CE-value 1.2e-21;gbkey=misc_feature;gene=clpX;inference=protein motif:PF00004
AL590842.1	EMBL	sequence_feature	3519976	3519999	.	-	.	ID=id7559;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=clpX;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3520559	3521182	.	-	.	ID=gene3105;Name=clpP;gbkey=Gene;gene=clpP;gene_biotype=protein_coding;gene_synonym=lopP;locus_tag=YPO3157
AL590842.1	EMBL	CDS	3520559	3521182	.	-	0	ID=cds3061;Parent=gene3105;Dbxref=GOA:Q8ZC65,InterPro:IPR001907,InterPro:IPR018215,InterPro:IPR023562,InterPro:IPR029045,NCBI_GP:CAL21752.1;Name=CAL21752.1;Note=Similar to Escherichia coli ATP-dependent Clp protease proteolytic subunit ClpP or LopP SW:CLPP_ECOLI (P19245) (207 aa) fasta scores: E(): 0%2C 89.4%25 id in 207 aa%2Cand to Yersinia enterocolitica ATP-dependent Clp protease proteolytic subunit ClpP SW:CLPP_YEREN (Q60107) (207 aa) fasta scores: E(): 0%2C 98.1%25 id in 207 aa;gbkey=CDS;gene=clpP;product=ATP-dependent Clp protease proteolytic subunit ClpP;protein_id=CAL21752.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3520568	3521137	.	-	.	ID=id7560;Note=Pfam match to entry PF00574 CLP_protease%2C Clp protease%2C score 455.30%2C E-value 5e-133;gbkey=misc_feature;gene=clpP;inference=protein motif:PF00574
AL590842.1	EMBL	sequence_feature	3520769	3520810	.	-	.	ID=id7561;Note=PS00382 Endopeptidase Clp histidine active site.;gbkey=misc_feature;gene=clpP;inference=protein motif:ProSite:PS00382
AL590842.1	EMBL	sequence_feature	3520841	3520876	.	-	.	ID=id7562;Note=PS00381 Endopeptidase Clp serine active site.;gbkey=misc_feature;gene=clpP;inference=protein motif:ProSite:PS00381
AL590842.1	EMBL	gene	3521644	3522948	.	-	.	ID=gene3106;Name=tig;gbkey=Gene;gene=tig;gene_biotype=protein_coding;locus_tag=YPO3158
AL590842.1	EMBL	CDS	3521644	3522948	.	-	0	ID=cds3062;Parent=gene3106;Dbxref=GOA:Q8ZC64,InterPro:IPR001179,InterPro:IPR005215,InterPro:IPR008880,InterPro:IPR008881,InterPro:IPR027304,NCBI_GP:CAL21753.1;Name=CAL21753.1;Note=Similar to Escherichia coli trigger factor Tig SW:TIG_ECOLI (P22257) (432 aa) fasta scores: E(): 0%2C 86.3%25 id in 430 aa%2C and to Vibrio cholerae trigger factor Tig or Vc1923 TR:Q9KQS5 (EMBL:AE004268) (433 aa) fasta scores: E(): 0%2C 68.4%25 id in 433 aa;gbkey=CDS;gene=tig;inference=similar to sequence:INSDC:AE004268;product=Trigger factor;protein_id=CAL21753.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3522235	3522447	.	-	.	ID=id7563;Note=Pfam match to entry PF00254 FKBP%2C FKBP-type peptidyl-prolyl cis-trans isomerases%2C score 26.50%2C E-value 7e-07;gbkey=misc_feature;gene=tig;inference=protein motif:PF00254
AL590842.1	EMBL	sequence_feature	3522259	3522282	.	-	.	ID=id7564;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=tig;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3523021	3523224	.	-	.	ID=gene3107;Name=YPO3159;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3159
AL590842.1	EMBL	CDS	3523021	3523224	.	-	0	ID=cds3063;Parent=gene3107;Dbxref=UniProtKB/TrEMBL:Q74WS0,NCBI_GP:CAL21754.1;Name=CAL21754.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21754.1;transl_table=11
AL590842.1	EMBL	gene	3523365	3523685	.	-	.	ID=gene3108;Name=bolA;gbkey=Gene;gene=bolA;gene_biotype=protein_coding;locus_tag=YPO3160
AL590842.1	EMBL	CDS	3523365	3523685	.	-	0	ID=cds3064;Parent=gene3108;Dbxref=InterPro:IPR002634,UniProtKB/TrEMBL:Q7CK31,NCBI_GP:CAL21755.1;Name=CAL21755.1;Note=Similar to Escherichia coli BolA protein SW:BOLA_ECOLI (P15298) (105 aa) fasta scores: E(): 5.5e-31%2C72.4%25 id in 105 aa%2C and to Vibrio alginolyticus BolA protein homolog SW:BOLA_VIBAL (Q56585) (102 aa) fasta scores: E(): 6.9e-23%2C 56.6%25 id in 99 aa;gbkey=CDS;gene=bolA;product=BolA protein;protein_id=CAL21755.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3523428	3523655	.	-	.	ID=id7565;Note=Pfam match to entry PF01722 BolA%2C BolA-like protein%2Cscore 129.60%2C E-value 5.7e-35;gbkey=misc_feature;gene=bolA;inference=protein motif:PF01722
AL590842.1	EMBL	gene	3524034	3524612	.	+	.	ID=gene3109;Name=yajG;gbkey=Gene;gene=yajG;gene_biotype=protein_coding;locus_tag=YPO3161
AL590842.1	EMBL	CDS	3524034	3524612	.	+	0	ID=cds3065;Parent=gene3109;Dbxref=InterPro:IPR005619,InterPro:IPR012640,UniProtKB/TrEMBL:Q7CK32,NCBI_GP:CAL21756.1;Name=CAL21756.1;Note=Similar to Escherichia coli hypothetical 20.9 kDa lipoprotein in ampG-bolA intergenic region precursor YajG SW:YAJG_ECOLI (P36671) (192 aa) fasta scores: E(): 0%2C 72.4%25 id in 192 aa;gbkey=CDS;gene=yajG;product=putative lipoprotein;protein_id=CAL21756.1;transl_table=11
AL590842.1	EMBL	gene	3524730	3526208	.	+	.	ID=gene3110;Name=ampG;gbkey=Gene;gene=ampG;gene_biotype=protein_coding;locus_tag=YPO3162
AL590842.1	EMBL	CDS	3524730	3526208	.	+	0	ID=cds3066;Parent=gene3110;Dbxref=GOA:Q0WCC1,InterPro:IPR004752,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q0WCC1,NCBI_GP:CAL21757.1;Name=CAL21757.1;Note=Similar to Escherichia coli AmpG protein SW:AMPG_ECOLI (P36670) (491 aa) fasta scores: E(): 0%2C 73.1%25 id in 491 aa%2C and to Neisseria meningitidis putative integral membrane signal transducer protein Nma2127 TR:Q9JSU7 (EMBL:AL162758) (427 aa) fasta scores: E(): 0%2C40.6%25 id in 399 aa;gbkey=CDS;gene=ampG;inference=similar to sequence:INSDC:AL162758;product=Beta-lactamase induction signal transducer AmpG;protein_id=CAL21757.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3524766	3524834	.	+	.	ID=id7566;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=ampG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3524877	3524936	.	+	.	ID=id7567;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=ampG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3524973	3525032	.	+	.	ID=id7568;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=ampG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3525045	3525098	.	+	.	ID=id7569;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=ampG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3525159	3525227	.	+	.	ID=id7570;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=ampG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3525255	3525314	.	+	.	ID=id7571;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=ampG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3525396	3525464	.	+	.	ID=id7572;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=ampG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3525507	3525575	.	+	.	ID=id7573;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=ampG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3525588	3525656	.	+	.	ID=id7574;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=ampG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3525684	3525752	.	+	.	ID=id7575;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=ampG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3525789	3525857	.	+	.	ID=id7576;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=ampG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3525867	3525935	.	+	.	ID=id7577;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=ampG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3526008	3526076	.	+	.	ID=id7578;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=ampG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3526119	3526187	.	+	.	ID=id7579;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=ampG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3526500	3527267	.	+	.	ID=gene3111;Name=yfeN;gbkey=Gene;gene=yfeN;gene_biotype=protein_coding;locus_tag=YPO3163
AL590842.1	EMBL	CDS	3526500	3527267	.	+	0	ID=cds3067;Parent=gene3111;Dbxref=GOA:Q0WCC0,InterPro:IPR018013,UniProtKB/TrEMBL:Q0WCC0,NCBI_GP:CAL21758.1;Name=CAL21758.1;Note=Similar to Escherichia coli hypothetical 29.2 kDa protein in xapA-lig intergenic region YfeN SW:YFEN_ECOLI (P45564) (254 aa) fasta scores: E(): 0%2C 60.3%25 id in 257 aa;gbkey=CDS;gene=yfeN;product=putative exported protein;protein_id=CAL21758.1;transl_table=11
AL590842.1	EMBL	gene	3527637	3528593	.	+	.	ID=gene3112;Name=cyoA;gbkey=Gene;gene=cyoA;gene_biotype=protein_coding;locus_tag=YPO3164
AL590842.1	EMBL	CDS	3527637	3528593	.	+	0	ID=cds3068;Parent=gene3112;Dbxref=GOA:Q7CK33,InterPro:IPR002429,InterPro:IPR006333,InterPro:IPR008972,InterPro:IPR010514,InterPro:IPR011759,InterPro:IPR012141,UniProtKB/TrEMBL:Q7CK33,NCBI_GP:CAL21759.1;Name=CAL21759.1;Note=Similar to Escherichia coli ubiquinol oxidase polypeptide II precursor CyoA SW:CYOA_ECOLI (P18400) (315 aa) fasta scores: E(): 0%2C 66.9%25 id in 317 aa%2C and to Pseudomonas putida ubiquinol oxidase polypeptide II precursor CyoA SW:CYOA_PSEPU (Q9WWR1) (314 aa) fasta scores: E(): 0%2C 57.5%25 id in 320 aa;gbkey=CDS;gene=cyoA;inference=protein motif:TMHMM:2.0;product=cytochrome O ubiquinol oxidase subunit II;protein_id=CAL21759.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3527670	3527726	.	+	.	ID=id7580;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3527679	3527711	.	+	.	ID=id7581;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=cyoA;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	3527769	3527837	.	+	.	ID=id7582;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3527898	3527960	.	+	.	ID=id7583;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3528598	3530589	.	+	.	ID=gene3113;Name=cyoB;gbkey=Gene;gene=cyoB;gene_biotype=protein_coding;locus_tag=YPO3165
AL590842.1	EMBL	CDS	3528598	3530589	.	+	0	ID=cds3069;Parent=gene3113;Dbxref=GOA:Q7CK34,InterPro:IPR000883,InterPro:IPR014207,InterPro:IPR023615,InterPro:IPR023616,UniProtKB/TrEMBL:Q7CK34,NCBI_GP:CAL21760.1;Name=CAL21760.1;Note=Similar to Escherichia coli ubiquinol oxidase polypeptide I CyoB SW:CYOB_ECOLI (P18401) (663 aa) fasta scores: E(): 0%2C 84.3%25 id in 663 aa%2C and to Pseudomonas aeruginosa cytochrome O ubiquinol oxidase subunit I CyoB or Pa1318 TR:AAG04707 (EMBL:AE004561) (658 aa) fasta scores: E(): 0%2C 67.7%25 id in 656 aa;gbkey=CDS;gene=cyoB;inference=similar to sequence:INSDC:AE004561;product=cytochrome O ubiquinol oxidase subunit I;protein_id=CAL21760.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3528640	3528708	.	+	.	ID=id7584;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3528736	3530112	.	+	.	ID=id7585;Note=Pfam match to entry PF00115 COX1%2C Cytochrome C and Quinol oxidase polypeptide I%2C score 882.90%2C E-value 1e-261;gbkey=misc_feature;gene=cyoB;inference=protein motif:PF00115
AL590842.1	EMBL	sequence_feature	3528766	3528834	.	+	.	ID=id7586;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3528910	3528978	.	+	.	ID=id7587;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3529015	3529083	.	+	.	ID=id7588;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3529168	3529236	.	+	.	ID=id7589;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3529294	3529362	.	+	.	ID=id7590;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3529420	3529488	.	+	.	ID=id7591;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3529435	3529599	.	+	.	ID=id7592;Note=PS00077 Heme-copper oxidase catalytic subunit%2Ccopper B binding region signature.;gbkey=misc_feature;gene=cyoB;inference=protein motif:ProSite:PS00077
AL590842.1	EMBL	sequence_feature	3529525	3529593	.	+	.	ID=id7593;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3529636	3529704	.	+	.	ID=id7594;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3529741	3529809	.	+	.	ID=id7595;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3529837	3529905	.	+	.	ID=id7596;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3529963	3530031	.	+	.	ID=id7597;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3530089	3530157	.	+	.	ID=id7598;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3530374	3530478	.	+	.	ID=id7599;Note=one of 14 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3530579	3531193	.	+	.	ID=gene3114;Name=cyoC;gbkey=Gene;gene=cyoC;gene_biotype=protein_coding;locus_tag=YPO3166
AL590842.1	EMBL	CDS	3530579	3531193	.	+	0	ID=cds3070;Parent=gene3114;Dbxref=GOA:Q7CK35,InterPro:IPR000298,InterPro:IPR013833,InterPro:IPR014206,InterPro:IPR024791,UniProtKB/TrEMBL:Q7CK35,NCBI_GP:CAL21761.1;Name=CAL21761.1;Note=Similar to Escherichia coli cytochrome O ubiquinol oxidase subunit III CyoC SW:CYOC_ECOLI (P18402) (204 aa) fasta scores: E(): 0%2C 75.1%25 id in 205 aa%2C and to Pseudomonas putida cytochrome O ubiquinol oxidase subunit III CyoC SW:CYOC_PSEPU (Q9WWR3) (207 aa) fasta scores: E(): 0%2C 64.6%25 id in 209 aa;gbkey=CDS;gene=cyoC;inference=protein motif:TMHMM:2.0;product=cytochrome O ubiquinol oxidase subunit III;protein_id=CAL21761.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3530579	3531187	.	+	.	ID=id7600;Note=Pfam match to entry PF00510 COX3%2C Cytochrome c oxidase subunit III%2C score -166.40%2C E-value 3.9e-05;gbkey=misc_feature;gene=cyoC;inference=protein motif:PF00510
AL590842.1	EMBL	sequence_feature	3530663	3530731	.	+	.	ID=id7601;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3530774	3530842	.	+	.	ID=id7602;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3530879	3530932	.	+	.	ID=id7603;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3530990	3531058	.	+	.	ID=id7604;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3531119	3531187	.	+	.	ID=id7605;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3531193	3531525	.	+	.	ID=gene3115;Name=cyoD;gbkey=Gene;gene=cyoD;gene_biotype=protein_coding;locus_tag=YPO3167
AL590842.1	EMBL	CDS	3531193	3531525	.	+	0	ID=cds3071;Parent=gene3115;Dbxref=GOA:Q74WS8,InterPro:IPR005171,InterPro:IPR014210,UniProtKB/TrEMBL:Q74WS8,NCBI_GP:CAL21762.1;Name=CAL21762.1;Note=Similar to Escherichia coli cytochrome O ubiquinol oxidase protein CyoD SW:CYOD_ECOLI (P18403) (109 aa) fasta scores: E(): 2.7e-25%2C 65.1%25 id in 109 aa%2C and to Pseudomonas aeruginosa cytochrome O ubiquinol oxidase subunit IV CyoD or Pa1320 TR:AAG04709 (EMBL:AE004561) (111 aa) fasta scores: E(): 1.1e-19%2C 57.4%25 id in 108 aa;gbkey=CDS;gene=cyoD;inference=similar to sequence:INSDC:AE004561;product=cytochrome O ubiquinol oxidase subunit CyoD;protein_id=CAL21762.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3531250	3531309	.	+	.	ID=id7606;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3531322	3531390	.	+	.	ID=id7607;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3531427	3531495	.	+	.	ID=id7608;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3531536	3532426	.	+	.	ID=gene3116;Name=cyoE;gbkey=Gene;gene=cyoE;gene_biotype=protein_coding;locus_tag=YPO3168
AL590842.1	EMBL	CDS	3531536	3532426	.	+	0	ID=cds3072;Parent=gene3116;Dbxref=GOA:Q0WCB5,InterPro:IPR000537,InterPro:IPR006369,NCBI_GP:CAL21763.1;Name=CAL21763.1;Note=Similar to Escherichia coli protoheme IX farnesyltransferase CyoE SW:CYOE_ECOLI (P18404) (296 aa) fasta scores: E(): 0%2C 83.9%25 id in 292 aa%2C and to Pseudomonas putida protoheme IX farnesyltransferase CyoE SW:CYOE_PSEPU (Q9WWR5) (295 aa) fasta scores: E(): 0%2C 65.5%25 id in 293 aa;gbkey=CDS;gene=cyoE;inference=protein motif:TMHMM:2.0;product=protoheme IX farnesyltransferase;protein_id=CAL21763.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3531551	3531619	.	+	.	ID=id7609;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3531578	3532387	.	+	.	ID=id7610;Note=Pfam match to entry PF01040 UbiA%2C UbiA prenyltransferase family%2C score 381.10%2C E-value 1.1e-110;gbkey=misc_feature;gene=cyoE;inference=protein motif:PF01040
AL590842.1	EMBL	sequence_feature	3531647	3531715	.	+	.	ID=id7611;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3531665	3531697	.	+	.	ID=id7612;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=cyoE;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	3531704	3531772	.	+	.	ID=id7613;Note=PS00943 UbiA prenyltransferase family signature.;gbkey=misc_feature;gene=cyoE;inference=protein motif:ProSite:PS00943
AL590842.1	EMBL	sequence_feature	3531773	3531841	.	+	.	ID=id7614;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3531854	3531913	.	+	.	ID=id7615;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3531932	3532000	.	+	.	ID=id7616;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3532013	3532081	.	+	.	ID=id7617;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3532160	3532228	.	+	.	ID=id7618;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3532238	3532291	.	+	.	ID=id7619;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3532325	3532393	.	+	.	ID=id7620;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=cyoE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3532904	3534274	.	+	.	ID=gene3117;Name=yajR;gbkey=Gene;gene=yajR;gene_biotype=protein_coding;locus_tag=YPO3169
AL590842.1	EMBL	CDS	3532904	3534274	.	+	0	ID=cds3073;Parent=gene3117;Dbxref=GOA:Q7CK36,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q7CK36,NCBI_GP:CAL21764.1;Name=CAL21764.1;Note=Similar to Escherichia coli hypothetical 49.0 kDa protein in abpA-cyoE intergenic region YajR SW:YAJR_ECOLI (P77726) (456 aa) fasta scores: E(): 0%2C 72.8%25 id in 456 aa%2Cand to Pseudomonas aeruginosa probable MFS transporter Pa4233 TR:AAG07621 (EMBL:AE004840) (462 aa) fasta scores: E(): 0%2C 56.6%25 id in 458 aa;gbkey=CDS;gene=yajR;inference=similar to sequence:INSDC:AE004840;product=putative transporter;protein_id=CAL21764.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3532934	3534094	.	+	.	ID=id7621;Note=Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporter%2C score -61.30%2C E-value 0.00012;gbkey=misc_feature;gene=yajR;inference=protein motif:PF00083
AL590842.1	EMBL	sequence_feature	3532961	3533029	.	+	.	ID=id7622;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yajR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3533057	3533125	.	+	.	ID=id7623;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yajR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3533144	3533203	.	+	.	ID=id7624;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yajR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3533213	3533281	.	+	.	ID=id7625;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yajR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3533315	3533383	.	+	.	ID=id7626;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yajR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3533411	3533479	.	+	.	ID=id7627;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yajR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3533558	3533626	.	+	.	ID=id7628;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yajR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3533654	3533722	.	+	.	ID=id7629;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yajR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3533747	3533806	.	+	.	ID=id7630;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yajR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3533819	3533887	.	+	.	ID=id7631;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yajR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3533924	3533992	.	+	.	ID=id7632;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yajR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3534005	3534073	.	+	.	ID=id7633;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=yajR;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3534398	3534898	.	-	.	ID=gene3118;Name=YPO3170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3170
AL590842.1	EMBL	CDS	3534398	3534898	.	-	0	ID=cds3074;Parent=gene3118;Dbxref=InterPro:IPR007551,NCBI_GP:CAL21765.1;Name=CAL21765.1;Note=Similar to Escherichia coli protein YajQ SW:YAJQ_ECOLI (P77482) (169 aa) fasta scores: E(): 0%2C 73.0%25 id in 163 aa%2C and to Pasteurella multocida hypothetical protein PM1656 TR:AAK03740 (EMBL:AE006202) (163 aa) fasta scores: E(): 0%2C 76.7%25 id in 163 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE006202;product=conserved hypothetical protein;protein_id=CAL21765.1;transl_table=11
AL590842.1	EMBL	gene	3535121	3536032	.	+	.	ID=gene3119;Name=apbA;gbkey=Gene;gene=apbA;gene_biotype=protein_coding;gene_synonym=panE;locus_tag=YPO3171
AL590842.1	EMBL	CDS	3535121	3536032	.	+	0	ID=cds3075;Parent=gene3119;Dbxref=GOA:Q8ZC51,InterPro:IPR003710,InterPro:IPR008927,InterPro:IPR013328,InterPro:IPR013332,InterPro:IPR013752,InterPro:IPR016040,NCBI_GP:CAL21766.1;Name=CAL21766.1;Note=Similar to Salmonella typhimurium 2-dehydropantoate 2-reductase ApbA or PanE SW:APBA_SALTY (P37402) (281 aa) fasta scores: E(): 0%2C 60.9%25 id in 276 aa%2C and to Escherichia coli 2-dehydropantoate 2-reductase ApbA or PanE SW:APBA_ECOLI (P77728) (303 aa) fasta scores: E(): 0%2C 63.0%25 id in 303 aa;gbkey=CDS;gene=apbA;product=2-dehydropantoate 2-reductase;protein_id=CAL21766.1;transl_table=11
AL590842.1	EMBL	gene	3535995	3536585	.	+	.	ID=gene3120;Name=thiJ;gbkey=Gene;gene=thiJ;gene_biotype=protein_coding;locus_tag=YPO3172
AL590842.1	EMBL	CDS	3535995	3536585	.	+	0	ID=cds3076;Parent=gene3120;Dbxref=InterPro:IPR002818,InterPro:IPR006287,InterPro:IPR029062,UniProtKB/TrEMBL:Q0WCB1,NCBI_GP:CAL21767.1;Name=CAL21767.1;Note=Similar to Escherichia coli 4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme ThiJ SW:THIJ_ECOLI (Q46948) (196 aa) fasta scores: E(): 0%2C 74.0%25 id in 196 aa%2C and to Vibrio cholerae 4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme Vc2308 TR:Q9KPQ8 (EMBL:AE004301) (205 aa) fasta scores: E(): 5.2e-27%2C 46.0%25 id in 189 aa;gbkey=CDS;gene=thiJ;inference=similar to sequence:INSDC:AE004301;product=4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme;protein_id=CAL21767.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3536070	3536468	.	+	.	ID=id7634;Note=Pfam match to entry PF01965 ThiJ%2C ThiJ/PfpI family%2Cscore 144.60%2C E-value 1.8e-39;gbkey=misc_feature;gene=thiJ;inference=protein motif:PF01965
AL590842.1	EMBL	gene	3536653	3538104	.	-	.	ID=gene3121;Name=thiI;gbkey=Gene;gene=thiI;gene_biotype=protein_coding;locus_tag=YPO3173
AL590842.1	EMBL	CDS	3536653	3538104	.	-	0	ID=cds3077;Parent=gene3121;Dbxref=GOA:Q8ZC49,InterPro:IPR001763,InterPro:IPR003720,InterPro:IPR004114,InterPro:IPR014729,InterPro:IPR020536,InterPro:IPR026340,NCBI_GP:CAL21768.1;Name=CAL21768.1;Note=Similar to Salmonella typhimurium thiamine biosynthesis protein ThiI SW:THII_SALTY (P55913) (482 aa) fasta scores: E(): 0%2C 82.6%25 id in 483 aa%2C and to Escherichia coli thiamine biosynthesis protein ThiI SW:THII_ECOLI (P77718) (482 aa) fasta scores: E(): 0%2C 81.8%25 id in 483 aa;gbkey=CDS;gene=thiI;product=thiamine biosynthesis protein;protein_id=CAL21768.1;transl_table=11
AL590842.1	EMBL	gene	3538202	3538372	.	-	.	ID=gene3122;Name=YPO3174;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3174
AL590842.1	EMBL	CDS	3538202	3538372	.	-	0	ID=cds3078;Parent=gene3122;Dbxref=UniProtKB/TrEMBL:Q7CK37,NCBI_GP:CAL21769.1;Name=CAL21769.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21769.1;transl_table=11
AL590842.1	EMBL	gene	3538454	3538708	.	+	.	ID=gene3123;Name=xseB;gbkey=Gene;gene=xseB;gene_biotype=protein_coding;locus_tag=YPO3175
AL590842.1	EMBL	CDS	3538454	3538708	.	+	0	ID=cds3079;Parent=gene3123;Dbxref=GOA:Q8ZC47,InterPro:IPR003761,NCBI_GP:CAL21770.1;Name=CAL21770.1;Note=Similar to Escherichia coli exodeoxyribonuclease VII small subunit XseB SW:EX7S_ECOLI (P22938) (79 aa) fasta scores: E(): 1e-19%2C 77.1%25 id in 83 aa%2C and to Haemophilus influenzae exodeoxyribonuclease VII small subunit Xseb or HI1437 SW:EX7S_HAEIN (P43914) (84 aa) fasta scores: E(): 3.4e-12%2C 58.2%25 id in 79 aa. This CDS contains a small insertion (4 amino acids) at the N-terminal end;gbkey=CDS;gene=xseB;product=exodeoxyribonuclease VII small subunit;protein_id=CAL21770.1;transl_table=11
AL590842.1	EMBL	gene	3538713	3539633	.	+	.	ID=gene3124;Name=ispA;gbkey=Gene;gene=ispA;gene_biotype=protein_coding;locus_tag=YPO3176
AL590842.1	EMBL	CDS	3538713	3539633	.	+	0	ID=cds3080;Parent=gene3124;Dbxref=GOA:Q7CK38,InterPro:IPR000092,InterPro:IPR008949,InterPro:IPR017446,UniProtKB/TrEMBL:Q7CK38,NCBI_GP:CAL21771.1;Name=CAL21771.1;Note=Similar to Escherichia coli geranyltranstransferase IspA SW:ISPA_ECOLI (P22939) (299 aa) fasta scores: E(): 0%2C72.5%25 id in 298 aa%2C and to Vibrio cholerae geranyltranstransferase Vc0890 TR:Q9KTL2 (EMBL:AE004173) (294 aa) fasta scores: E(): 0%2C 64.1%25 id in 295 aa;gbkey=CDS;gene=ispA;inference=similar to sequence:INSDC:AE004173;product=geranyltranstransferase;protein_id=CAL21771.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3538827	3539618	.	+	.	ID=id7635;Note=Pfam match to entry PF00348 polyprenyl_synt%2CPolyprenyl synthetases%2C score 392.00%2C E-value 5.8e-114;gbkey=misc_feature;gene=ispA;inference=protein motif:PF00348
AL590842.1	EMBL	sequence_feature	3538974	3539024	.	+	.	ID=id7636;Note=PS00723 Polyprenyl synthetases signature 1.;gbkey=misc_feature;gene=ispA;inference=protein motif:ProSite:PS00723
AL590842.1	EMBL	sequence_feature	3539376	3539414	.	+	.	ID=id7637;Note=PS00444 Polyprenyl synthetases signature 2.;gbkey=misc_feature;gene=ispA;inference=protein motif:ProSite:PS00444
AL590842.1	EMBL	gene	3539789	3541648	.	+	.	ID=gene3125;Name=b0420;gbkey=Gene;gene=b0420;gene_biotype=protein_coding;gene_synonym=dxs;locus_tag=YPO3177
AL590842.1	EMBL	CDS	3539789	3541648	.	+	0	ID=cds3081;Parent=gene3125;Dbxref=GOA:Q8ZC45,InterPro:IPR005474,InterPro:IPR005475,InterPro:IPR005476,InterPro:IPR005477,InterPro:IPR009014,InterPro:IPR020826,InterPro:IPR029061,NCBI_GP:CAL21772.1;Name=CAL21772.1;Note=Similar to Escherichia coli 1-deoxy-D-xylulose 5-phosphate synthase Dxs or B0420 SW:DXS_ECOLI (P77488) (619 aa) fasta scores: E(): 0%2C 82.7%25 id in 619 aa%2C and to Vibrio cholerae 1-deoxy-D-xylulose 5-phosphate synthase Dxs or Vc0889 TR:Q9KTL3 (EMBL:AE004173) (626 aa) fasta scores: E(): 0%2C 75.8%25 id in 625 aa;gbkey=CDS;gene=b0420;inference=similar to sequence:INSDC:AE004173;product=1-deoxy-D-xylulose 5-phosphate synthase;protein_id=CAL21772.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3539894	3539953	.	+	.	ID=id7638;Note=PS00801 Transketolase signature 1.;gbkey=misc_feature;gene=b0420;inference=protein motif:ProSite:PS00801
AL590842.1	EMBL	sequence_feature	3541061	3541111	.	+	.	ID=id7639;Note=PS00802 Transketolase signature 2.;gbkey=misc_feature;gene=b0420;inference=protein motif:ProSite:PS00802
AL590842.1	EMBL	repeat_region	3541719	3542430	.	-	.	ID=id7640;Note=Contains a 'A' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	3541827	3542285	.	-	.	ID=gene3126;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO3178
AL590842.1	EMBL	CDS	3541827	3542285	.	-	0	ID=cds3082;Parent=gene3126;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL21773.1;Name=CAL21773.1;Note=Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL21773.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3541920	3542231	.	-	.	ID=id7641;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	3542499	3542984	.	-	.	ID=gene3127;Name=pgpA;gbkey=Gene;gene=pgpA;gene_biotype=protein_coding;locus_tag=YPO3179
AL590842.1	EMBL	CDS	3542499	3542984	.	-	0	ID=cds3083;Parent=gene3127;Dbxref=GOA:Q74WT5,InterPro:IPR007686,InterPro:IPR026037,UniProtKB/TrEMBL:Q74WT5,NCBI_GP:CAL21774.1;Name=CAL21774.1;Note=Similar to Escherichia coli phosphatidylglycerophosphatase A PgpA SW:PGPA_ECOLI (P18200) (172 aa) fasta scores: E(): 0%2C 75.0%25 id in 160 aa%2Cand to Vibrio cholerae phosphatidylglycerophosphatase A Vc2265 TR:Q9KPU7 (EMBL:AE004298) (169 aa) fasta scores: E(): 0%2C 60.4%25 id in 164 aa;gbkey=CDS;gene=pgpA;inference=similar to sequence:INSDC:AE004298;product=phosphatidylglycerophosphatase A;protein_id=CAL21774.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3542508	3542573	.	-	.	ID=id7642;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=pgpA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3542664	3542720	.	-	.	ID=id7643;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=pgpA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3542784	3542840	.	-	.	ID=id7644;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=pgpA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3542856	3542921	.	-	.	ID=id7645;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=pgpA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3542977	3543966	.	-	.	ID=gene3128;Name=thiL;gbkey=Gene;gene=thiL;gene_biotype=protein_coding;locus_tag=YPO3180
AL590842.1	EMBL	CDS	3542977	3543966	.	-	0	ID=cds3084;Parent=gene3128;Dbxref=GOA:Q7CK42,InterPro:IPR000728,InterPro:IPR006283,InterPro:IPR010918,InterPro:IPR016188,UniProtKB/TrEMBL:Q7CK42,NCBI_GP:CAL21775.1;Name=CAL21775.1;Note=Similar to Escherichia coli thiamine-monophosphate kinase ThiL SW:THIL_ECOLI (P77785) (325 aa) fasta scores: E(): 0%2C 75.0%25 id in 324 aa%2C and to Salmonella typhimurium thiamine-monophosphate kinase ThiL SW:THIL_SALTY (P55881) (325 aa) fasta scores: E(): 0%2C 73.1%25 id in 324 aa;gbkey=CDS;gene=thiL;product=thiamine-monophosphate kinase;protein_id=CAL21775.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3543073	3543942	.	-	.	ID=id7646;Note=Pfam match to entry PF00586 AIRS%2C AIR synthase related protein%2C score 28.60%2C E-value 2.1e-08;gbkey=misc_feature;gene=thiL;inference=protein motif:PF00586
AL590842.1	EMBL	gene	3544207	3544623	.	-	.	ID=gene3129;Name=nusB;gbkey=Gene;gene=nusB;gene_biotype=protein_coding;gene_synonym=ssyB;locus_tag=YPO3181
AL590842.1	EMBL	CDS	3544207	3544623	.	-	0	ID=cds3085;Parent=gene3129;Dbxref=GOA:Q8ZC42,InterPro:IPR006027,InterPro:IPR011605,NCBI_GP:CAL21776.1;Name=CAL21776.1;Note=Similar to Escherichia coli N utilization substance protein B NusB or SsyB SW:NUSB_ECOLI (P04381) (139 aa) fasta scores: E(): 0%2C 83.3%25 id in 138 aa%2C and to Shigella flexneri NusB TR:O51826 (EMBL:AF002857) (101 aa) fasta scores: E(): 6.8e-31%2C 82.2%25 id in 101 aa;gbkey=CDS;gene=nusB;inference=similar to sequence:INSDC:AF002857;product=N utilization substance protein B;protein_id=CAL21776.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3544231	3544611	.	-	.	ID=id7647;Note=Pfam match to entry PF01029 NusB%2C NusB family%2C score 207.40%2C E-value 2.2e-58;gbkey=misc_feature;gene=nusB;inference=protein motif:PF01029
AL590842.1	EMBL	gene	3544644	3545114	.	-	.	ID=gene3130;Name=ribE;gbkey=Gene;gene=ribE;gene_biotype=protein_coding;gene_synonym=ribH;locus_tag=YPO3182
AL590842.1	EMBL	CDS	3544644	3545114	.	-	0	ID=cds3086;Parent=gene3130;Dbxref=GOA:Q8ZC41,InterPro:IPR002180,NCBI_GP:CAL21777.1;Name=CAL21777.1;Note=Similar to Photobacterium phosphoreum 6%2C7-dimethyl-8-ribityllumazine synthase RibH SW:RISB_PHOPO (P51963) (155 aa) fasta scores: E(): 0%2C 68.4%25 id in 155 aa%2Cand to Escherichia coli 6%2C7-dimethyl-8-ribityllumazine synthase RibH or RibE SW:RISB_ECOLI (P25540) (156 aa) fasta scores: E(): 0%2C 86.5%25 id in 155 aa;gbkey=CDS;gene=ribE;product=6%2C7-dimethyl-8-ribityllumazine synthase;protein_id=CAL21777.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3544653	3545087	.	-	.	ID=id7648;Note=Pfam match to entry PF00885 DMRL_synthase%2C6%2C7-dimethyl-8-ribityllumazine synthase%2C score 297.80%2CE-value 1.4e-85;gbkey=misc_feature;gene=ribE;inference=protein motif:PF00885
AL590842.1	EMBL	gene	3545250	3546359	.	-	.	ID=gene3131;Name=ribD;gbkey=Gene;gene=ribD;gene_biotype=protein_coding;gene_synonym=ribG;locus_tag=YPO3183
AL590842.1	EMBL	CDS	3545250	3546359	.	-	0	ID=cds3087;Parent=gene3131;Dbxref=GOA:Q7CK43,InterPro:IPR002125,InterPro:IPR002734,InterPro:IPR004794,InterPro:IPR011549,InterPro:IPR016192,InterPro:IPR016193,InterPro:IPR024072,UniProtKB/TrEMBL:Q7CK43,NCBI_GP:CAL21778.1;Name=CAL21778.1;Note=Similar to Escherichia coli riboflavin biosynthesis protein RibD or RibG SW:RIBD_ECOLI (P25539) (367 aa) fasta scores: E(): 0%2C 73.2%25 id in 365 aa%2C and to Haemophilus influenzae riboflavin biosynthesis protein ribD or RibG or hi0944 SW:RIBD_HAEIN (P44326) (372 aa) fasta scores: E(): 0%2C 56.8%25 id in 366 aa;gbkey=CDS;gene=ribD;product=riboflavin biosynthesis protein RibD [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase%3B 5-amino-6-(5-phosphoribosylamino)uracil reductase;protein_id=CAL21778.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3545301	3545915	.	-	.	ID=id7649;Note=Pfam match to entry PF01872 RibD_C%2C RibD C-terminal domain%2C score 290.90%2C E-value 1.6e-83;gbkey=misc_feature;gene=ribD;inference=protein motif:PF01872
AL590842.1	EMBL	sequence_feature	3546069	3546299	.	-	.	ID=id7650;Note=Pfam match to entry PF00383 dCMP_cyt_deam%2C Cytidine and deoxycytidylate deaminase zinc-binding region%2C score 115.70%2C E-value 9e-31;gbkey=misc_feature;gene=ribD;inference=protein motif:PF00383
AL590842.1	EMBL	sequence_feature	3546093	3546209	.	-	.	ID=id7651;Note=PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature.;gbkey=misc_feature;gene=ribD;inference=protein motif:ProSite:PS00903
AL590842.1	EMBL	gene	3546509	3546958	.	-	.	ID=gene3132;Name=YPO3184;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3184
AL590842.1	EMBL	CDS	3546509	3546958	.	-	0	ID=cds3088;Parent=gene3132;Dbxref=GOA:Q8ZC39,InterPro:IPR003796,InterPro:IPR005144,NCBI_GP:CAL21779.1;Name=CAL21779.1;Note=Similar to Escherichia coli hypothetical protein YbaD SW:YBAD_ECOLI (P25538) (149 aa) fasta scores: E(): 0%2C86.6%25 id in 149 aa%2C and to Shigella flexneri hypothetical protein TR:O51824 (EMBL:AF002857) (149 aa) fasta scores: E(): 0%2C 85.2%25 id in 149 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF002857;product=conserved hypothetical protein;protein_id=CAL21779.1;transl_table=11
AL590842.1	EMBL	gene	3547029	3547622	.	-	.	ID=gene3133;Name=YPO3185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3185
AL590842.1	EMBL	CDS	3547029	3547622	.	-	0	ID=cds3089;Parent=gene3133;Dbxref=UniProtKB/TrEMBL:Q7CK44,NCBI_GP:CAL21780.1;Name=CAL21780.1;Note=Similar to Actinobacillus pleuropneumoniae TolQ protein tolQ TR:Q9ZAG4 (EMBL:Y17916) (222 aa) fasta scores: E(): 2.2%2C 26.4%25 id in 129 aa%2C and to the C-terminal region of Mycobacterium leprae putative 3-oxoacyl-[acyl-carrier protein] reductase Mlcb1883.19C TR:O69504 (EMBL:AL022486) (454 aa) fasta scores: E(): 7.7%2C 32.1%25 id in 106 aa;gbkey=CDS;inference=similar to sequence:INSDC:Y17916;product=putative membrane protein;protein_id=CAL21780.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3547203	3547253	.	-	.	ID=id7652;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3547266	3547331	.	-	.	ID=id7653;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3547655	3548350	.	-	.	ID=gene3134;Name=YPO3186;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3186
AL590842.1	EMBL	CDS	3547655	3548350	.	-	0	ID=cds3090;Parent=gene3134;Dbxref=UniProtKB/TrEMBL:Q7CK45,NCBI_GP:CAL21781.1;Name=CAL21781.1;Note=Weakly similar to the internal regions of Borrelia burgdorferi outer surface protein C TR:P96515 (EMBL:AB000352) (202 aa) fasta scores: E(): 2.9%2C 28.6%25 id in 98 aa%2C and to Bacillus pumilus putative Rap TR:O52357 (EMBL:AF036712) (370 aa) fasta scores: E(): 2.1%2C 24.3%25 id in 136 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF036712;product=hypothetical protein;protein_id=CAL21781.1;transl_table=11
AL590842.1	EMBL	repeat_region	3548540	3549251	.	-	.	ID=id7654;Note=Contains a 'A' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	3548648	3549106	.	-	.	ID=gene3135;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO3187
AL590842.1	EMBL	CDS	3548648	3549106	.	-	0	ID=cds3091;Parent=gene3135;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL21782.1;Name=CAL21782.1;Note=Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL21782.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3548741	3549052	.	-	.	ID=id7655;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	3549313	3550281	.	-	.	ID=gene3136;Name=secF;gbkey=Gene;gene=secF;gene_biotype=protein_coding;locus_tag=YPO3188
AL590842.1	EMBL	CDS	3549313	3550281	.	-	0	ID=cds3092;Parent=gene3136;Dbxref=GOA:Q0WC95,InterPro:IPR005665,InterPro:IPR022645,InterPro:IPR022646,InterPro:IPR022813,UniProtKB/TrEMBL:Q0WC95,NCBI_GP:CAL21783.1;Name=CAL21783.1;Note=Similar to Escherichia coli protein-export membrane protein SecF SW:SECF_ECOLI (P19674) (323 aa) fasta scores: E(): 0%2C 80.8%25 id in 323 aa%2C and to Vibrio cholerae protein-export membrane protein SecF Vc0744 TR:Q9KTY6 (EMBL:AE004160) (315 aa) fasta scores: E(): 0%2C 61.0%25 id in 308 aa;gbkey=CDS;gene=secF;inference=similar to sequence:INSDC:AE004160;product=protein-export membrane protein SecF;protein_id=CAL21783.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3549379	3550176	.	-	.	ID=id7656;Note=Pfam match to entry PF02355 SecD_SecF%2C %2C score 450.30%2C E-value 1.6e-131;gbkey=misc_feature;gene=secF;inference=protein motif:PF02355
AL590842.1	EMBL	sequence_feature	3549394	3549459	.	-	.	ID=id7657;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=secF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3549475	3549540	.	-	.	ID=id7658;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=secF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3549634	3549699	.	-	.	ID=id7659;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=secF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3549712	3549777	.	-	.	ID=id7660;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=secF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3549799	3549855	.	-	.	ID=id7661;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=secF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3550153	3550218	.	-	.	ID=id7662;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=secF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3550292	3552139	.	-	.	ID=gene3137;Name=secD;gbkey=Gene;gene=secD;gene_biotype=protein_coding;locus_tag=YPO3189
AL590842.1	EMBL	CDS	3550292	3552139	.	-	0	ID=cds3093;Parent=gene3137;Dbxref=GOA:Q74WU2,InterPro:IPR005791,InterPro:IPR022645,InterPro:IPR022646,InterPro:IPR022813,InterPro:IPR027398,UniProtKB/TrEMBL:Q74WU2,NCBI_GP:CAL21784.1;Name=CAL21784.1;Note=Similar to Escherichia coli protein-export membrane protein SecD SW:SECD_ECOLI (P19673) (615 aa) fasta scores: E(): 0%2C 83.4%25 id in 615 aa%2C and to Enterobacter aerogenes protein SecD TR:Q9XBN2 (EMBL:AF163861) (615 aa) fasta scores: E(): 0%2C 84.2%25 id in 615 aa;gbkey=CDS;gene=secD;inference=similar to sequence:INSDC:AF163861;product=protein-export membrane protein SecD;protein_id=CAL21784.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3550319	3551122	.	-	.	ID=id7663;Note=Pfam match to entry PF02355 SecD_SecF%2C %2C score -68.50%2C E-value 0.00023;gbkey=misc_feature;gene=secD;inference=protein motif:PF02355
AL590842.1	EMBL	sequence_feature	3550334	3550399	.	-	.	ID=id7664;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=secD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3550430	3550495	.	-	.	ID=id7665;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=secD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3550568	3550633	.	-	.	ID=id7666;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=secD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3550649	3550714	.	-	.	ID=id7667;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=secD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3550724	3550789	.	-	.	ID=id7668;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=secD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3551144	3551185	.	-	.	ID=id7669;Note=PS00761 Signal peptidases I signature 3.;gbkey=misc_feature;gene=secD;inference=protein motif:ProSite:PS00761
AL590842.1	EMBL	sequence_feature	3552053	3552118	.	-	.	ID=id7670;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=secD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3552167	3552532	.	-	.	ID=gene3138;Name=yajC;gbkey=Gene;gene=yajC;gene_biotype=protein_coding;locus_tag=YPO3190
AL590842.1	EMBL	CDS	3552167	3552502	.	-	0	ID=cds3094;Parent=gene3138;Dbxref=InterPro:IPR003849,UniProtKB/TrEMBL:Q0WC93,NCBI_GP:CAL21785.1;Name=CAL21785.1;Note=Similar to Escherichia coli%2C and Shigella flexneri hypothetical 11.9 kDa protein in tgt-secD intergenic region YajC SW:YAJC_ECOLI (P19677) (110 aa) fasta scores: E(): 0%2C84.7%25 id in 111 aa;gbkey=CDS;gene=yajC;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL21785.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3552383	3552436	.	-	.	ID=id7671;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=yajC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3552467	3552532	.	-	.	ID=id7672;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=yajC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3552614	3553738	.	-	.	ID=gene3139;Name=tgt;gbkey=Gene;gene=tgt;gene_biotype=protein_coding;locus_tag=YPO3191
AL590842.1	EMBL	CDS	3552614	3553738	.	-	0	ID=cds3095;Parent=gene3139;Dbxref=GOA:Q8ZC33,InterPro:IPR002616,InterPro:IPR004803,NCBI_GP:CAL21786.1;Name=CAL21786.1;Note=Similar to Escherichia coli queuine tRNA-ribosyltransferase Tgt SW:TGT_ECOLI (P19675) (375 aa) fasta scores: E(): 0%2C 89.0%25 id in 374 aa%2C and to Shigella flexneri queuine tRNA-ribosyltransferase Tgt or VacC SW:TGT_SHIFL (Q54177) (375 aa) fasta scores: E(): 0%2C 89.0%25 id in 374 aa;gbkey=CDS;gene=tgt;product=queuine tRNA-ribosyltransferase;protein_id=CAL21786.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3552650	3553366	.	-	.	ID=id7673;Note=Pfam match to entry PF01702 TGT%2C Queuine tRNA-ribosyltransferase%2C score 550.40%2C E-value 1.2e-161;gbkey=misc_feature;gene=tgt;inference=protein motif:PF01702
AL590842.1	EMBL	gene	3553831	3554901	.	-	.	ID=gene3140;Name=queA;gbkey=Gene;gene=queA;gene_biotype=protein_coding;locus_tag=YPO3192
AL590842.1	EMBL	CDS	3553831	3554901	.	-	0	ID=cds3096;Parent=gene3140;Dbxref=GOA:Q8ZC32,InterPro:IPR003699,NCBI_GP:CAL21787.1;Name=CAL21787.1;Note=Similar to Escherichia coli S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA SW:QUEA_ECOLI (P21516) (356 aa) fasta scores: E(): 0%2C 83.3%25 id in 354 aa%2C and to Vibrio cholerae S-adenosylmethionine:tRNA ribosyltransferase-isomerase Vc0739 TR:Q9KTZ1 (EMBL:AE004160) (352 aa) fasta scores: E(): 0%2C 70.9%25 id in 347 aa;gbkey=CDS;gene=queA;inference=similar to sequence:INSDC:AE004160;product=S-adenosylmethionine:tRNA ribosyltransferase-isomerase;protein_id=CAL21787.1;transl_table=11
AL590842.1	EMBL	gene	3555104	3555685	.	+	.	ID=gene3141;Name=YPO3193;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3193
AL590842.1	EMBL	CDS	3555104	3555685	.	+	0	ID=cds3097;Parent=gene3141;Dbxref=GOA:Q8ZC31,InterPro:IPR007431,InterPro:IPR023491,NCBI_GP:CAL21788.1;Name=CAL21788.1;Note=Similar to Escherichia coli hypothetical protein YajB SW:YAJB_ECOLI (P21515) (193 aa) fasta scores: E(): 0%2C60.1%25 id in 193 aa%2C and to Vibrio cholerae hypothetical protein VCA0769 TR:Q9KLH5 (EMBL:AE004405) (193 aa) fasta scores: E(): 2.1e-28%2C 42.3%25 id in 194 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004405;product=conserved hypothetical protein;protein_id=CAL21788.1;transl_table=11
AL590842.1	EMBL	gene	3555984	3556586	.	+	.	ID=gene3142;Name=ahpC;gbkey=Gene;gene=ahpC;gene_biotype=protein_coding;locus_tag=YPO3194
AL590842.1	EMBL	CDS	3555984	3556586	.	+	0	ID=cds3098;Parent=gene3142;Dbxref=GOA:Q7CK47,InterPro:IPR000866,InterPro:IPR012336,InterPro:IPR019479,InterPro:IPR024706,UniProtKB/TrEMBL:Q7CK47,NCBI_GP:CAL21789.1;Name=CAL21789.1;Note=Similar to Campylobacter jejuni alkyl hydroperoxide reductase subunit C AhpC or Cj0334 TR:Q9ZI13 (EMBL:AF044271) (198 aa) fasta scores: E(): 0%2C 59.8%25 id in 199 aa%2C and to Vibrio cholerae antioxidant%2C AhpC/Tsa family Vc0731 TR:Q9KTZ9 (EMBL:AE004159) (207 aa) fasta scores: E(): 0%2C 71.5%25 id in 200 aa;gbkey=CDS;gene=ahpC;inference=similar to sequence:INSDC:AF044271;product=putative alkyl hydroperoxide reductase subunit c;protein_id=CAL21789.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3555993	3556451	.	+	.	ID=id7674;Note=Pfam match to entry PF00578 AhpC-TSA%2C AhpC/TSA family%2C score 194.30%2C E-value 1.9e-54;gbkey=misc_feature;gene=ahpC;inference=protein motif:PF00578
AL590842.1	EMBL	repeat_region	3556656	3557367	.	+	.	ID=id7675;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	3556801	3557259	.	+	.	ID=gene3143;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO3195
AL590842.1	EMBL	CDS	3556801	3557259	.	+	0	ID=cds3099;Parent=gene3143;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL21790.1;Name=CAL21790.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL21790.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3556855	3557166	.	+	.	ID=id7676;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	3557387	3557518	.	-	.	ID=gene3144;Name=YPO3196;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3196
AL590842.1	EMBL	CDS	3557387	3557518	.	-	0	ID=cds3100;Parent=gene3144;Dbxref=UniProtKB/TrEMBL:Q74WU6,NCBI_GP:CAL21791.1;Name=CAL21791.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21791.1;transl_table=11
AL590842.1	EMBL	gene	3557544	3557819	.	-	.	ID=gene3145;Name=YPO3197;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3197
AL590842.1	EMBL	CDS	3557544	3557819	.	-	0	ID=cds3101;Parent=gene3145;Dbxref=UniProtKB/TrEMBL:Q74WU7,NCBI_GP:CAL21792.1;Name=CAL21792.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21792.1;transl_table=11
AL590842.1	EMBL	pseudogene	3557687	3559452	.	+	.	ID=gene3146;Name=ggt;gbkey=Gene;gene=ggt;gene_biotype=pseudogene;locus_tag=YPO3198;pseudo=true
AL590842.1	EMBL	CDS	3557687	3559452	.	+	0	ID=cds3102;Parent=gene3146;Note=Similar to Escherichia coli gamma-glutamyltranspeptidase precursor Ggt SW:GGT_ECOLI (P18956) (580 aa) fasta scores: E(): 0%2C 50.5%25 id in 533 aa%2Cand to Pseudomonas sp. gamma-glutamyltranspeptidase precursor Ggt SW:GGT_PSESP (P36267) (575 aa) fasta scores: E(): 0%2C 58.5%25 id in 581 aa. There is a frameshift after codon 82. The frameshift occurs within a homopolymeric tract of 10G. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=ggt;product=gamma-glutamyltranspeptidase precursor (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	3557911	3559437	.	+	.	ID=id7677;Note=Pfam match to entry PF01019 G_glu_transpept%2CGamma-glutamyltranspeptidase%2C score 647.80%2C E-value 5.7e-191;gbkey=misc_feature;gene=ggt;inference=protein motif:PF01019
AL590842.1	EMBL	sequence_feature	3558811	3558885	.	+	.	ID=id7678;Note=PS00462 Gamma-glutamyltranspeptidase signature.;gbkey=misc_feature;gene=ggt;inference=protein motif:ProSite:PS00462
AL590842.1	EMBL	gene	3559660	3560340	.	-	.	ID=gene3147;Name=YPO3199;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3199
AL590842.1	EMBL	CDS	3559660	3560340	.	-	0	ID=cds3103;Parent=gene3147;Dbxref=GOA:Q7CK48,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,UniProtKB/TrEMBL:Q7CK48,NCBI_GP:CAL21794.1;Name=CAL21794.1;Note=Similar to Salmonella typhimurium 3-oxoacyl-[acyl-carrier protein] reductase FabG SW:FABG_SALTY (O85141) (244 aa) fasta scores: E(): 1.1e-07%2C29.0%25 id in 193 aa%2C and to Pseudomonas aeruginosa probable dehydrogenase Pa4079 TR:AAG07466 (EMBL:AE004824) (229 aa) fasta scores: E(): 5.1e-28%2C 40.3%25 id in 226 aa%2C and to to Myxococcus xanthus C-factor CsgA or spoC SW:CSGA_MYXXA (P21158) (166 aa) fasta scores: E(): 2.4e-13%2C 32.7%25 id in 168 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004824;product=probable short-chain dehydrogenase;protein_id=CAL21794.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3559789	3560325	.	-	.	ID=id7679;Note=Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase%2C score 103.40%2C E-value 4.5e-27;gbkey=misc_feature;inference=protein motif:PF00106
AL590842.1	EMBL	gene	3560495	3562324	.	-	.	ID=gene3148;Name=malZ;gbkey=Gene;gene=malZ;gene_biotype=protein_coding;locus_tag=YPO3200
AL590842.1	EMBL	CDS	3560495	3562324	.	-	0	ID=cds3104;Parent=gene3148;Dbxref=GOA:Q7CK49,InterPro:IPR004185,InterPro:IPR006047,InterPro:IPR006589,InterPro:IPR013780,InterPro:IPR013781,InterPro:IPR014756,InterPro:IPR015902,InterPro:IPR017069,InterPro:IPR017853,UniProtKB/TrEMBL:Q7CK49,NCBI_GP:CAL21795.1;Name=CAL21795.1;Note=Similar to Escherichia coli maltodextrin glucosidase MalZ SW:MALZ_ECOLI (P21517) (605 aa) fasta scores: E(): 0%2C57.7%25 id in 608 aa;gbkey=CDS;gene=malZ;product=putative maltodextrin glucosidase;protein_id=CAL21795.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3560588	3561964	.	-	.	ID=id7680;Note=Pfam match to entry PF00128 alpha-amylase%2C Alpha amylase%2C score 333.40%2C E-value 2.6e-96;gbkey=misc_feature;gene=malZ;inference=protein motif:PF00128
AL590842.1	EMBL	gene	3562885	3564276	.	-	.	ID=gene3149;Name=proY;gbkey=Gene;gene=proY;gene_biotype=protein_coding;locus_tag=YPO3201
AL590842.1	EMBL	CDS	3562885	3564276	.	-	0	ID=cds3105;Parent=gene3149;Dbxref=GOA:Q0WC83,InterPro:IPR002293,InterPro:IPR004840,InterPro:IPR004841,UniProtKB/TrEMBL:Q0WC83,NCBI_GP:CAL21796.1;Name=CAL21796.1;Note=Similar to Salmonella typhimurium proline-specific permease ProY SW:PROY_SALTY (P37460) (456 aa) fasta scores: E(): 0%2C 82.4%25 id in 450 aa%2C and to Escherichia coli proline-specific permease ProY SW:PROY_ECOLI (P77327) (457 aa) fasta scores: E(): 0%2C 81.6%25 id in 451 aa. Similar to YPO4015 (61.5%25 identity in 442 aa overlap);gbkey=CDS;gene=proY;inference=protein motif:TMHMM:2.0;product=probable proline-specific permease;protein_id=CAL21796.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3562927	3564252	.	-	.	ID=id7681;Note=Pfam match to entry PF00324 aa_permeases%2C Amino acid permease%2C score 546.60%2C E-value 1.7e-160;gbkey=misc_feature;gene=proY;inference=protein motif:PF00324
AL590842.1	EMBL	sequence_feature	3562936	3562989	.	-	.	ID=id7682;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=proY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3563005	3563070	.	-	.	ID=id7683;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=proY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3563137	3563202	.	-	.	ID=id7684;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=proY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3563218	3563283	.	-	.	ID=id7685;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=proY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3563377	3563442	.	-	.	ID=id7686;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=proY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3563488	3563553	.	-	.	ID=id7687;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=proY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3563617	3563682	.	-	.	ID=id7688;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=proY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3563743	3563808	.	-	.	ID=id7689;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=proY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3563845	3563910	.	-	.	ID=id7690;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=proY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3563956	3564021	.	-	.	ID=id7691;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=proY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3564061	3564153	.	-	.	ID=id7692;Note=PS00218 Amino acid permeases signature.;gbkey=misc_feature;gene=proY;inference=protein motif:ProSite:PS00218
AL590842.1	EMBL	sequence_feature	3564082	3564138	.	-	.	ID=id7693;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=proY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3564151	3564216	.	-	.	ID=id7694;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=proY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3564352	3565671	.	-	.	ID=gene3150;Name=brnQ;gbkey=Gene;gene=brnQ;gene_biotype=protein_coding;locus_tag=YPO3202
AL590842.1	EMBL	CDS	3564352	3565671	.	-	0	ID=cds3106;Parent=gene3150;Dbxref=GOA:Q7CK50,InterPro:IPR004685,UniProtKB/TrEMBL:Q7CK50,NCBI_GP:CAL21797.1;Name=CAL21797.1;Note=Similar to Salmonella typhimurium branched-chain amino acid transport system II carrier protein BrnQ SW:BRNQ_SALTY (P14931) (439 aa) fasta scores: E(): 0%2C 74.6%25 id in 433 aa%2C and to Escherichia coli branched-chain amino acid transport system II carrier protein BrnQ SW:BRNQ_ECOLI (P37011) (439 aa) fasta scores: E(): 0%2C 76.0%25 id in 433 aa;gbkey=CDS;gene=brnQ;inference=protein motif:TMHMM:2.0;product=branched-chain amino acid transport system II carrier protein;protein_id=CAL21797.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3564382	3564447	.	-	.	ID=id7695;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=brnQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3564493	3564558	.	-	.	ID=id7696;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=brnQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3564580	3564645	.	-	.	ID=id7697;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=brnQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3564658	3564723	.	-	.	ID=id7698;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=brnQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3564763	3564828	.	-	.	ID=id7699;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=brnQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3564940	3565005	.	-	.	ID=id7700;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=brnQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3565042	3565107	.	-	.	ID=id7701;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=brnQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3565138	3565203	.	-	.	ID=id7702;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=brnQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3565240	3565305	.	-	.	ID=id7703;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=brnQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3565375	3565440	.	-	.	ID=id7704;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=brnQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3565480	3565545	.	-	.	ID=id7705;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=brnQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3565576	3565632	.	-	.	ID=id7706;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=brnQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3566145	3567209	.	-	.	ID=gene3151;Name=pstS;gbkey=Gene;gene=pstS;gene_biotype=protein_coding;locus_tag=YPO3203
AL590842.1	EMBL	CDS	3566145	3567209	.	-	0	ID=cds3107;Parent=gene3151;Dbxref=GOA:Q7CK51,InterPro:IPR011862,InterPro:IPR024370,UniProtKB/TrEMBL:Q7CK51,NCBI_GP:CAL21798.1;Name=CAL21798.1;Note=Similar to Pseudomonas putida phosphate-binding protein PstS TR:Q9Z414 (EMBL:AB017356) (334 aa) fasta scores: E(): 0%2C 55.2%25 id in 310 aa%2C and to Pseudomonas aeruginosa phosphate binding protein PstS or Pa5369 TR:Q9Z9M3 (EMBL:AB017492) (323 aa) fasta scores: E(): 0%2C57.7%25 id in 307 aa;gbkey=CDS;gene=pstS;inference=similar to sequence:INSDC:AB017492;product=phosphate binding protein;protein_id=CAL21798.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3566193	3567005	.	-	.	ID=id7707;Note=Pfam match to entry PF01449 PstS%2C Phosphate-binding protein%2C score 71.60%2C E-value 1.6e-17;gbkey=misc_feature;gene=pstS;inference=protein motif:PF01449
AL590842.1	EMBL	gene	3567231	3568547	.	-	.	ID=gene3152;Name=nmpB;gbkey=Gene;gene=nmpB;gene_biotype=protein_coding;gene_synonym=phoR;locus_tag=YPO3204
AL590842.1	EMBL	CDS	3567231	3568547	.	-	0	ID=cds3108;Parent=gene3152;Dbxref=GOA:Q7CK52,InterPro:IPR000014,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR013767,InterPro:IPR014310,InterPro:IPR021766,UniProtKB/TrEMBL:Q7CK52,NCBI_GP:CAL21799.1;Name=CAL21799.1;Note=Similar to Escherichia coli phosphate regulon sensor protein PhoR or NmpB SW:PHOR_ECOLI (P08400) (431 aa) fasta scores: E(): 0%2C 73.2%25 id in 426 aa%2C and to Shigella dysenteriae phosphate regulon sensor protein PhoR SW:PHOR_SHIDY (P45609) (431 aa) fasta scores: E(): 0%2C 72.5%25 id in 426 aa;gbkey=CDS;gene=nmpB;product=phosphate regulon sensor protein PhoR;protein_id=CAL21799.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3567282	3567911	.	-	.	ID=id7708;Note=Pfam match to entry PF00512 signal%2C Histidine kinase%2C score 241.20%2C E-value 1.4e-68;gbkey=misc_feature;gene=nmpB;inference=protein motif:PF00512
AL590842.1	EMBL	sequence_feature	3568062	3568256	.	-	.	ID=id7709;Note=Pfam match to entry PF00989 PAS%2C PAS domain%2C score 41.30%2C E-value 7.9e-10;gbkey=misc_feature;gene=nmpB;inference=protein motif:PF00989
AL590842.1	EMBL	gene	3568572	3569261	.	-	.	ID=gene3153;Name=phoB;gbkey=Gene;gene=phoB;gene_biotype=protein_coding;locus_tag=YPO3205
AL590842.1	EMBL	CDS	3568572	3569261	.	-	0	ID=cds3109;Parent=gene3153;Dbxref=GOA:Q0WC79,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011879,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:Q0WC79,NCBI_GP:CAL21800.1;Name=CAL21800.1;Note=Similar to Escherichia coli phosphate regulon transcriptional regulatory protein PhoB SW:PHOB_ECOLI (P08402) (229 aa) fasta scores: E(): 0%2C 90.0%25 id in 229 aa%2Cand to Shigella dysenteriae phosphate regulon transcriptional regulatory protein PhoB SW:PHOB_SHIDY (P45606) (229 aa) fasta scores: E(): 0%2C 89.5%25 id in 229 aa;gbkey=CDS;gene=phoB;product=phosphate regulon transcriptional regulatory protein;protein_id=CAL21800.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3568596	3568811	.	-	.	ID=id7710;Note=Pfam match to entry PF00486 trans_reg_C%2CTranscriptional regulatory protein%2C C terminal%2C score 119.90%2C E-value 1.4e-34;gbkey=misc_feature;gene=phoB;inference=protein motif:PF00486
AL590842.1	EMBL	sequence_feature	3568914	3569255	.	-	.	ID=id7711;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 138.00%2C E-value 1.7e-37;gbkey=misc_feature;gene=phoB;inference=protein motif:PF00072
AL590842.1	EMBL	gene	3569529	3570773	.	+	.	ID=gene3154;Name=sbcD;gbkey=Gene;gene=sbcD;gene_biotype=protein_coding;locus_tag=YPO3206
AL590842.1	EMBL	CDS	3569529	3570773	.	+	0	ID=cds3110;Parent=gene3154;Dbxref=GOA:Q7CK53,InterPro:IPR004593,InterPro:IPR004843,InterPro:IPR026843,InterPro:IPR029052,UniProtKB/TrEMBL:Q7CK53,NCBI_GP:CAL21801.1;Name=CAL21801.1;Note=Similar to Escherichia coli exonuclease SbcD SW:SBCD_ECOLI (P13457) (400 aa) fasta scores: E(): 0%2C 60.7%25 id in 402 aa%2C and to Pseudomonas aeruginosa exonuclease SbcD or PA4281 TR:AAG07669 (EMBL:AE004844) (409 aa) fasta scores: E(): 3.4e-32%2C 33.1%25 id in 390 aa;gbkey=CDS;gene=sbcD;inference=similar to sequence:INSDC:AE004844;product=exonuclease SbcD;protein_id=CAL21801.1;transl_table=11
AL590842.1	EMBL	pseudogene	3570770	3574420	.	+	.	ID=gene3155;Name=sbcC;gbkey=Gene;gene=sbcC;gene_biotype=pseudogene;locus_tag=YPO3207;pseudo=true
AL590842.1	EMBL	CDS	3570770	3574420	.	+	0	ID=cds3111;Parent=gene3155;Note=This CDS is disrupted by the insertion of IS100 element. The IS insertion occurred near the C-terminal end (following codon 1217)%2C replacing the very C-terminus with 17 aa encoded within the IS element. It is not clear whether this insertion affects the function of the protein. Similar to Escherichia coli exonuclease SbcC SW:SBCC_ECOLI (P13458) (1048 aa) fasta scores: E(): 0%2C 45.6%25 id in 1222 aa%2C and to Rhodobacter capsulatus potential exonuclease SbcC TR:O68032 (EMBL:AF010496) (1238 aa) fasta scores: E(): 0%2C 29.4%25 id in 1270 aa;gbkey=CDS;gene=sbcC;inference=similar to sequence:INSDC:AF010496;product=exonuclease SbcC (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	3570878	3570901	.	+	.	ID=id7712;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=sbcC;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	repeat_region	3574421	3576374	.	-	.	ID=id7713;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	3574421	3574448	.	+	.	ID=id7714;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	3574487	3575269	.	-	.	ID=gene3156;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO3208
AL590842.1	EMBL	CDS	3574487	3575269	.	-	0	ID=cds3112;Parent=gene3156;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL21803.1;Name=CAL21803.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL21803.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3574562	3575101	.	-	.	ID=id7715;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	3574919	3574942	.	-	.	ID=id7716;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3575266	3576288	.	-	.	ID=gene3157;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO3209
AL590842.1	EMBL	CDS	3575266	3576288	.	-	0	ID=cds3113;Parent=gene3157;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL21804.1;Name=CAL21804.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL21804.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3575410	3575943	.	-	.	ID=id7717;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	sequence_feature	3576172	3576237	.	-	.	ID=id7718;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	3576181	3576264	.	-	.	ID=id7719;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	INVERTED	3576347	3576374	.	-	.	ID=id7720;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	3577020	3577934	.	-	.	ID=gene3158;Name=YPO3211;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3211
AL590842.1	EMBL	CDS	3577020	3577934	.	-	0	ID=cds3114;Parent=gene3158;Dbxref=InterPro:IPR000600,UniProtKB/TrEMBL:Q7CK54,NCBI_GP:CAL21805.1;Name=CAL21805.1;Note=Similar to Escherichia coli hypothetical protein YajF SW:YAJF_ECOLI (P23917) (302 aa) fasta scores: E(): 0%2C69.2%25 id in 299 aa%2C and to Vibrio cholerae ROK family protein Vc0270 TR:Q9KV86 (EMBL:AE004115) (326 aa) fasta scores: E(): 0%2C 46.3%25 id in 298 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004115;product=conserved hypothetical protein;protein_id=CAL21805.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3577356	3577925	.	-	.	ID=id7721;Note=Pfam match to entry PF00480 ROK%2C ROK family%2C score 205.70%2C E-value 4.4e-60;gbkey=misc_feature;inference=protein motif:PF00480
AL590842.1	EMBL	sequence_feature	3577464	3577547	.	-	.	ID=id7722;Note=PS01125 ROK family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01125
AL590842.1	EMBL	gene	3578267	3579178	.	+	.	ID=gene3159;Name=rdgC;gbkey=Gene;gene=rdgC;gene_biotype=protein_coding;locus_tag=YPO3212
AL590842.1	EMBL	CDS	3578267	3579178	.	+	0	ID=cds3115;Parent=gene3159;Dbxref=GOA:Q8ZC18,InterPro:IPR007476,NCBI_GP:CAL21806.1;Name=CAL21806.1;Note=Similar to Escherichia coli recombination associated protein RdgC SW:RDGC_ECOLI (P36767) (303 aa) fasta scores: E(): 0%2C 83.4%25 id in 302 aa%2C and to Vibrio cholerae hypothetical protein Vc0718 TR:Q9KU12 (EMBL:AE004158) (304 aa) fasta scores: E(): 0%2C 55.7%25 id in 298 aa;gbkey=CDS;gene=rdgC;inference=similar to sequence:INSDC:AE004158;product=recombination associated protein RdgC;protein_id=CAL21806.1;transl_table=11
AL590842.1	EMBL	gene	3579414	3579701	.	-	.	ID=gene3160;Name=YPO3213;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3213
AL590842.1	EMBL	CDS	3579414	3579701	.	-	0	ID=cds3116;Parent=gene3160;Dbxref=InterPro:IPR009664,InterPro:IPR011051,InterPro:IPR014710,NCBI_GP:CAL21807.1;Name=CAL21807.1;Note=Similar to Escherichia coli hypothetical protein YaiE SW:YAIE_ECOLI (P36768) (94 aa) fasta scores: E(): 3.8e-23%2C 67.0%25 id in 94 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA1574 TR:AAG04963 (EMBL:AE004586) (93 aa) fasta scores: E(): 1.4e-16%2C 50.5%25 id in 93 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004586;product=conserved hypothetical protein;protein_id=CAL21807.1;transl_table=11
AL590842.1	EMBL	gene	3579765	3579935	.	-	.	ID=gene3161;Name=YPO3214;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3214
AL590842.1	EMBL	CDS	3579765	3579935	.	-	0	ID=cds3117;Parent=gene3161;Dbxref=UniProtKB/TrEMBL:Q74WV9,NCBI_GP:CAL21808.1;Name=CAL21808.1;Note=no significant database matches;gbkey=CDS;product=putative membrane protein;protein_id=CAL21808.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3579858	3579923	.	-	.	ID=id7723;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3580191	3580715	.	-	.	ID=gene3162;Name=aroL;gbkey=Gene;gene=aroL;gene_biotype=protein_coding;locus_tag=YPO3215
AL590842.1	EMBL	CDS	3580191	3580715	.	-	0	ID=cds3118;Parent=gene3162;Dbxref=GOA:Q8ZC15,InterPro:IPR000623,InterPro:IPR023000,InterPro:IPR027417,InterPro:IPR027544,NCBI_GP:CAL21809.1;Name=CAL21809.1;Note=Similar to Escherichia coli shikimate kinase II AroL SW:AROL_ECOLI (P08329) (174 aa) fasta scores: E(): 1.5e-31%2C55.4%25 id in 168 aa%2C and to Erwinia chrysanthemi shikimate kinase AroL or AroM SW:AROL_ERWCH (P10880) (173 aa) fasta scores: E(): 0%2C 63.7%25 id in 168 aa;gbkey=CDS;gene=aroL;product=shikimate kinase II;protein_id=CAL21809.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3580209	3580709	.	-	.	ID=id7724;Note=Pfam match to entry PF01202 SKI%2C Shikimate kinase%2Cscore 245.00%2C E-value 1.1e-69;gbkey=misc_feature;gene=aroL;inference=protein motif:PF01202
AL590842.1	EMBL	sequence_feature	3580470	3580544	.	-	.	ID=id7725;Note=PS01128 Shikimate kinase signature.;gbkey=misc_feature;gene=aroL;inference=protein motif:ProSite:PS01128
AL590842.1	EMBL	sequence_feature	3580668	3580691	.	-	.	ID=id7726;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=aroL;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3580962	3581519	.	-	.	ID=gene3163;Name=YPO3216;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3216
AL590842.1	EMBL	CDS	3580962	3581519	.	-	0	ID=cds3119;Parent=gene3163;Dbxref=GOA:Q0WC70,InterPro:IPR001737,InterPro:IPR029063,UniProtKB/TrEMBL:Q0WC70,NCBI_GP:CAL21810.1;Name=CAL21810.1;Note=Similar to Rhizobium meliloti phospholipid N-methyltransferase PmtA TR:AAG10237 (EMBL:AF201699) (200 aa) fasta scores: E(): 1.1e-07%2C 25.9%25 id in 185 aa%2C and to Bradyrhizobium japonicum PmtA protein TR:Q9LCT2 (EMBL:Y09633) (199 aa) fasta scores: E(): 0.0057%2C 24.2%25 id in 178 aa%2C and to Klebsiella pneumoniae hypothetical 22.7 kDa protein TR:O87755 (EMBL:AJ011907) (196 aa) fasta scores: E(): 0%2C 52.9%25 id in 191 aa;gbkey=CDS;inference=similar to sequence:INSDC:Y09633;product=putative methyltransferase;protein_id=CAL21810.1;transl_table=11
AL590842.1	EMBL	gene	3581787	3582002	.	+	.	ID=gene3164;Name=YPO3217;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3217
AL590842.1	EMBL	CDS	3581787	3582002	.	+	0	ID=cds3120;Parent=gene3164;Dbxref=UniProtKB/TrEMBL:Q74WW1,NCBI_GP:CAL21811.1;Name=CAL21811.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21811.1;transl_table=11
AL590842.1	EMBL	gene	3582249	3582770	.	-	.	ID=gene3165;Name=YPO3218;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3218
AL590842.1	EMBL	CDS	3582249	3582770	.	-	0	ID=cds3121;Parent=gene3165;Dbxref=GOA:Q7CK56,InterPro:IPR013216,InterPro:IPR029063,UniProtKB/TrEMBL:Q7CK56,NCBI_GP:CAL21812.1;Name=CAL21812.1;Note=Similar to Escherichia coli hypothetical protein YafE SW:YAFE_ECOLI (P30866) (207 aa) fasta scores: E(): 0%2C65.1%25 id in 169 aa%2C and to Pseudomonas aeruginosa YafE or PA3119 TR:O87011 (EMBL:U93274) (187 aa) fasta scores: E(): 0%2C 55.2%25 id in 172 aa;gbkey=CDS;inference=similar to sequence:INSDC:U93274;product=conserved hypothetical protein;protein_id=CAL21812.1;transl_table=11
AL590842.1	EMBL	gene	3583016	3583285	.	-	.	ID=gene3166;Name=YPO3219;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3219
AL590842.1	EMBL	CDS	3583016	3583285	.	-	0	ID=cds3122;Parent=gene3166;Dbxref=UniProtKB/TrEMBL:Q7CK57,NCBI_GP:CAL21813.1;Name=CAL21813.1;Note=no significant database matches;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL21813.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3583088	3583138	.	-	.	ID=id7727;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3583151	3583216	.	-	.	ID=id7728;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3583468	3584226	.	-	.	ID=gene3167;Name=YPO3220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3220
AL590842.1	EMBL	CDS	3583468	3584226	.	-	0	ID=cds3123;Parent=gene3167;Dbxref=GOA:Q7CK58,InterPro:IPR009875,InterPro:IPR009926,InterPro:IPR012349,InterPro:IPR023787,UniProtKB/TrEMBL:Q7CK58,NCBI_GP:CAL21814.1;Name=CAL21814.1;Note=Similar to Escherichia coli hypothetical protein YcgR SW:YCGR_ECOLI (P76010) (244 aa) fasta scores: E(): 0%2C40.7%25 id in 241 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21814.1;transl_table=11
AL590842.1	EMBL	gene	3584554	3585813	.	-	.	ID=gene3168;Name=proA;gbkey=Gene;gene=proA;gene_biotype=protein_coding;locus_tag=YPO3221
AL590842.1	EMBL	CDS	3584554	3585813	.	-	0	ID=cds3124;Parent=gene3168;Dbxref=GOA:Q8ZC09,InterPro:IPR000965,InterPro:IPR012134,InterPro:IPR015590,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,InterPro:IPR020593,NCBI_GP:CAL21815.1;Name=CAL21815.1;Note=Similar to Serratia marcescens gamma-glutamyl phosphate reductase ProA SW:PROA_SERMA (P17857) (417 aa) fasta scores: E(): 0%2C 85.1%25 id in 417 aa%2C and to Escherichia coli gamma-glutamyl phosphate reductase ProA SW:PROA_ECOLI (P07004) (417 aa) fasta scores: E(): 0%2C 72.4%25 id in 417 aa;gbkey=CDS;gene=proA;product=gamma-glutamyl phosphate reductase;protein_id=CAL21815.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3584572	3585744	.	-	.	ID=id7729;Note=Pfam match to entry PF00171 aldedh%2C Aldehyde dehydrogenase family%2C score -217.90%2C E-value 0.00013;gbkey=misc_feature;gene=proA;inference=protein motif:PF00171
AL590842.1	EMBL	sequence_feature	3584776	3584841	.	-	.	ID=id7730;Note=PS01223 Gamma-glutamyl phosphate reductase signature.;gbkey=misc_feature;gene=proA;inference=protein motif:ProSite:PS01223
AL590842.1	EMBL	gene	3585823	3586926	.	-	.	ID=gene3169;Name=proB;gbkey=Gene;gene=proB;gene_biotype=protein_coding;locus_tag=YPO3222
AL590842.1	EMBL	CDS	3585823	3586926	.	-	0	ID=cds3125;Parent=gene3169;Dbxref=GOA:Q8ZC08,InterPro:IPR001048,InterPro:IPR001057,InterPro:IPR002478,InterPro:IPR005715,InterPro:IPR011529,InterPro:IPR015947,InterPro:IPR019797,NCBI_GP:CAL21816.1;Name=CAL21816.1;Note=Similar to Serratia marcescens glutamate 5-kinase ProB SW:PROB_SERMA (P17856) (367 aa) fasta scores: E(): 0%2C92.9%25 id in 367 aa%2C and to Escherichia coli glutamate 5-kinase ProB SW:PROB_ECOLI (P07005) (367 aa) fasta scores: E(): 0%2C 87.1%25 id in 365 aa;gbkey=CDS;gene=proB;product=glutamate 5-kinase;protein_id=CAL21816.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3585877	3586101	.	-	.	ID=id7731;Note=Pfam match to entry PF01472 PUA%2C PUA domain%2C score 83.40%2C E-value 4.7e-21;gbkey=misc_feature;gene=proB;inference=protein motif:PF01472
AL590842.1	EMBL	sequence_feature	3586243	3586308	.	-	.	ID=id7732;Note=PS00902 Glutamate 5-kinase signature.;gbkey=misc_feature;gene=proB;inference=protein motif:ProSite:PS00902
AL590842.1	EMBL	sequence_feature	3586336	3586914	.	-	.	ID=id7733;Note=Pfam match to entry PF00696 aakinase%2C Amino acid kinase family%2C score 149.20%2C E-value 7.2e-41;gbkey=misc_feature;gene=proB;inference=protein motif:PF00696
AL590842.1	EMBL	gene	3587103	3587504	.	-	.	ID=gene3170;Name=crl;gbkey=Gene;gene=crl;gene_biotype=protein_coding;locus_tag=YPO3223
AL590842.1	EMBL	CDS	3587103	3587504	.	-	0	ID=cds3126;Parent=gene3170;Dbxref=GOA:Q7CK59,InterPro:IPR009986,NCBI_GP:CAL21817.1;Name=CAL21817.1;Note=Similar to Escherichia coli curlin genes transcriptional activatory protein Crl SW:CRL_ECOLI (P24251) (132 aa) fasta scores: E(): 0%2C 62.1%25 id in 132 aa%2Cand to Vibrio cholerae transcriptional regulator Crl VC2275 TR:Q9KPT7 (EMBL:AE004299) (129 aa) fasta scores: E(): 1.4e-17%2C 44.6%25 id in 112 aa;gbkey=CDS;gene=crl;inference=similar to sequence:INSDC:AE004299;product=curlin genes regulatory protein;protein_id=CAL21817.1;transl_table=11
AL590842.1	EMBL	gene	3587564	3588811	.	-	.	ID=gene3171;Name=YPO3224;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3224
AL590842.1	EMBL	CDS	3587564	3588811	.	-	0	ID=cds3127;Parent=gene3171;Dbxref=InterPro:IPR010520,InterPro:IPR029058,NCBI_GP:CAL21818.1;Name=CAL21818.1;Note=Similar to Escherichia coli hypothetical protein YafA SW:YAFA_ECOLI (P04335) (433 aa) fasta scores: E(): 0%2C63.9%25 id in 407 aa%2C and to Vibrio cholerae hypothetical protein VC2276 TR:Q9KPT6 (EMBL:AE004299) (415 aa) fasta scores: E(): 0%2C 44.5%25 id in 411 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004299;product=conserved hypothetical protein;protein_id=CAL21818.1;transl_table=11
AL590842.1	EMBL	gene	3588938	3589396	.	-	.	ID=gene3172;Name=gpp;gbkey=Gene;gene=gpp;gene_biotype=protein_coding;gene_synonym=gpt,gxu;locus_tag=YPO3225
AL590842.1	EMBL	CDS	3588938	3589396	.	-	0	ID=cds3128;Parent=gene3172;Dbxref=GOA:Q8ZC05,InterPro:IPR000836,InterPro:IPR023747,InterPro:IPR029057,NCBI_GP:CAL21819.1;Name=CAL21819.1;Note=Similar to Escherichia coli xanthine-guanine phosphoribosyltransferase Gpt or Gpp or Gxu SW:XGPT_ECOLI (P00501) (152 aa) fasta scores: E(): 0%2C 88.8%25 id in 152 aa%2Cand to Salmonella typhimurium xanthine-guanine phosphoribosyltransferase Gpt SW:XGPT_SALTY (P26972) (152 aa) fasta scores: E(): 0%2C 89.5%25 id in 152 aa;gbkey=CDS;gene=gpp;product=xanthine-guanine phosphoribosyltransferase;protein_id=CAL21819.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3588989	3589363	.	-	.	ID=id7734;Note=Pfam match to entry PF00156 Pribosyltran%2CPhosphoribosyl transferase domain%2C score 28.40%2C E-value 8.9e-05;gbkey=misc_feature;gene=gpp;inference=protein motif:PF00156
AL590842.1	EMBL	sequence_feature	3589109	3589147	.	-	.	ID=id7735;Note=PS00103 Purine/pyrimidine phosphoribosyl transferases signature.;gbkey=misc_feature;gene=gpp;inference=protein motif:ProSite:PS00103
AL590842.1	EMBL	gene	3589823	3590128	.	+	.	ID=gene3173;Name=YPO3226;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3226
AL590842.1	EMBL	CDS	3589823	3590128	.	+	0	ID=cds3129;Parent=gene3173;Dbxref=UniProtKB/TrEMBL:Q74WW9,NCBI_GP:CAL21820.1;Name=CAL21820.1;Note=Similar to bacteriophage PS3 Gp13 TR:O80283 (EMBL:AJ011579) (105 aa) fasta scores: E(): 1.1e-07%2C 41.0%25 id in 78 aa%2C and to Bacillus halodurans inhibitor of the pro-sigma K processing machinery BofA TR:Q9KGM2 (EMBL:AP001507) (91 aa) fasta scores: E(): 5.4%2C 30.6%25 id in 85 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001507;product=putative membrane protein;protein_id=CAL21820.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3589850	3589915	.	+	.	ID=id7736;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3589949	3590017	.	+	.	ID=id7737;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3590045	3590113	.	+	.	ID=id7738;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3590325	3591929	.	+	.	ID=gene3174;Name=YPO3227;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3227
AL590842.1	EMBL	CDS	3590325	3591929	.	+	0	ID=cds3130;Parent=gene3174;Dbxref=GOA:Q74WX0,InterPro:IPR000601,InterPro:IPR004302,InterPro:IPR014756,InterPro:IPR022409,UniProtKB/TrEMBL:Q74WX0,NCBI_GP:CAL21821.1;Name=CAL21821.1;Note=Similar to Pseudoalteromonas sp. S9 chitinase B ChiB TR:Q9ZIX3 (EMBL:AF007895) (525 aa) fasta scores: E(): 0%2C29.8%25 id in 507 aa%2C and to Pseudomonas aeruginosa CbpD precursor TR:Q9RMI4 (EMBL:AF196565) (389 aa) fasta scores: E(): 2.3e-11%2C 28.5%25 id in 383 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF196565;product=putative carbohydrate-binding protein;protein_id=CAL21821.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3591417	3591671	.	+	.	ID=id7739;Note=Pfam match to entry PF00801 PKD%2C PKD domain%2C score 9.20%2C E-value 0.15;gbkey=misc_feature;inference=protein motif:PF00801
AL590842.1	EMBL	gene	3592389	3593300	.	-	.	ID=gene3175;Name=YPO3228;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3228
AL590842.1	EMBL	CDS	3592389	3593300	.	-	0	ID=cds3131;Parent=gene3175;Dbxref=GOA:Q7CK61,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CK61,NCBI_GP:CAL21822.1;Name=CAL21822.1;Note=Similar to Acinetobacter sp. ADP1 LysR-type transcriptional activator BenM TR:O68014 (EMBL:AF009224) (304 aa) fasta scores: E(): 1.2e-11%2C 25.7%25 id in 272 aa%2Cand to Ralstonia sp LysR-type transcriptional regulator ClcR TR:O69793 (EMBL:AJ006307) (294 aa) fasta scores: E(): 2.3e-10%2C 25.5%25 id in 302 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ006307;product=putative LysR-family transcriptional regulatory protein;protein_id=CAL21822.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3593100	3593288	.	-	.	ID=id7740;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 62.80%2C E-value 6.1e-15;gbkey=misc_feature;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	3593154	3593246	.	-	.	ID=id7741;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00044
AL590842.1	EMBL	sequence_feature	3593184	3593249	.	-	.	ID=id7742;Note=Predicted helix-turn-helix motif with score 1420 (+4.02 SD) at aa 18-39%2C sequence ESITLAADKLCITASPLSRNIK;gbkey=misc_feature
AL590842.1	EMBL	gene	3594022	3594177	.	-	.	ID=gene3176;Name=YPO3229;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3229
AL590842.1	EMBL	CDS	3594022	3594177	.	-	0	ID=cds3132;Parent=gene3176;Dbxref=UniProtKB/TrEMBL:Q74WX2,NCBI_GP:CAL21823.1;Name=CAL21823.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21823.1;transl_table=11
AL590842.1	EMBL	gene	3595175	3596635	.	+	.	ID=gene3177;Name=pepD;gbkey=Gene;gene=pepD;gene_biotype=protein_coding;gene_synonym=pepH;locus_tag=YPO3230
AL590842.1	EMBL	CDS	3595175	3596635	.	+	0	ID=cds3133;Parent=gene3177;Dbxref=GOA:Q7CK62,InterPro:IPR001160,InterPro:IPR002933,InterPro:IPR011650,UniProtKB/TrEMBL:Q7CK62,NCBI_GP:CAL21824.1;Name=CAL21824.1;Note=Similar to Escherichia coli aminoacyl-histidine dipeptidase PepD or PepH SW:PEPD_ECOLI (P15288) (484 aa) fasta scores: E(): 0%2C 78.3%25 id in 484 aa%2C and to Haemophilus influenzae aminoacyl-histidine dipeptidase PepD or HI0675 SW:PEPD_HAEIN (P44817) (483 aa) fasta scores: E(): 0%2C 53.6%25 id in 485 aa;gbkey=CDS;gene=pepD;product=aminoacyl-histidine dipeptidase;protein_id=CAL21824.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3595220	3595828	.	+	.	ID=id7743;Note=Pfam match to entry PF01546 Peptidase_M20%2C Peptidase family M20/M25/M40%2C score 82.40%2C E-value 1e-22;gbkey=misc_feature;gene=pepD;inference=protein motif:PF01546
AL590842.1	EMBL	sequence_feature	3596219	3596467	.	+	.	ID=id7744;Note=Pfam match to entry PF01546 Peptidase_M20%2C Peptidase family M20/M25/M40%2C score 1.30%2C E-value 18;gbkey=misc_feature;gene=pepD;inference=protein motif:PF01546
AL590842.1	EMBL	gene	3596749	3597807	.	-	.	ID=gene3178;Name=dinP;gbkey=Gene;gene=dinP;gene_biotype=protein_coding;locus_tag=YPO3231
AL590842.1	EMBL	CDS	3596749	3597807	.	-	0	ID=cds3134;Parent=gene3178;Dbxref=GOA:Q8ZBZ9,InterPro:IPR001126,InterPro:IPR017961,InterPro:IPR017963,InterPro:IPR022880,InterPro:IPR024728,NCBI_GP:CAL21825.1;Name=CAL21825.1;Note=Similar to Escherichia coli DNA-damage-inducible protein P DinP SW:DINP_ECOLI (Q47155) (351 aa) fasta scores: E(): 0%2C 76.2%25 id in 349 aa%2C and to Vibrio cholerae DNA-damage-inducible protein P Vc2287 TR:Q9KPS5 (EMBL:AE004300) (360 aa) fasta scores: E(): 0%2C 57.6%25 id in 349 aa;gbkey=CDS;gene=dinP;inference=similar to sequence:INSDC:AE004300;product=DNA-damage-inducible protein P;protein_id=CAL21825.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3596785	3597789	.	-	.	ID=id7745;Note=Pfam match to entry PF00817 IMS%2C impB/mucB/samB family%2C score 418.30%2C E-value 6.9e-122;gbkey=misc_feature;gene=dinP;inference=protein motif:PF00817
AL590842.1	EMBL	gene	3598163	3599110	.	+	.	ID=gene3179;Name=YPO3232;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3232
AL590842.1	EMBL	CDS	3598163	3599110	.	+	0	ID=cds3135;Parent=gene3179;Dbxref=GOA:Q7CK63,InterPro:IPR004129,InterPro:IPR017946,UniProtKB/TrEMBL:Q7CK63,NCBI_GP:CAL21826.1;Name=CAL21826.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein Pa4792 TR:AAG08178 (EMBL:AE004892) (311 aa) fasta scores: E(): 4.4e-17%2C 39.1%25 id in 289 aa%2C and to Mycobacterium tuberculosis hypothetical 32.2 kDa protein Rv2277c precursor or Mtcy339.33 SW:YM77_MYCTU (Q50687) (301 aa) fasta scores: E(): 3.5e-16%2C 38.3%25 id in 290 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004892;product=putative exported protein;protein_id=CAL21826.1;transl_table=11
AL590842.1	EMBL	gene	3599354	3599581	.	-	.	ID=gene3180;Name=YPO3233;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3233
AL590842.1	EMBL	CDS	3599354	3599581	.	-	0	ID=cds3136;Parent=gene3180;Dbxref=InterPro:IPR007495,UniProtKB/TrEMBL:Q74WX5,NCBI_GP:CAL21827.1;Name=CAL21827.1;Note=Similar to Vibrio cholerae hypothetical protein Vc2288 TR:Q9KPS4 (EMBL:AE004300) (77 aa) fasta scores: E(): 1.4e-14%2C 58.8%25 id in 68 aa%2C and to Neisseria meningitidis (serogroup A) putative periplasmic protein Nma0745 or Nmb0562 TR:Q9JRI9 (EMBL:AL162754) (71 aa) fasta scores: E(): 1.2e-09%2C 49.2%25 id in 61 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL162754;product=putative exported protein;protein_id=CAL21827.1;transl_table=11
AL590842.1	EMBL	gene	3599594	3600616	.	-	.	ID=gene3181;Name=apbE;gbkey=Gene;gene=apbE;gene_biotype=protein_coding;locus_tag=YPO3234
AL590842.1	EMBL	CDS	3599594	3600616	.	-	0	ID=cds3137;Parent=gene3181;Dbxref=GOA:Q0WC52,InterPro:IPR003374,InterPro:IPR024932,UniProtKB/TrEMBL:Q0WC52,NCBI_GP:CAL21828.1;Name=CAL21828.1;Note=Similar to Salmonella typhimurium thiamine biosynthesis lipoprotein ApbE precursor SW:APBE_SALTY (P41780) (350 aa) fasta scores: E(): 0%2C 43.1%25 id in 346 aa%2Cand to Vibrio cholerae thiamin biosynthesis lipoprotein ApbE Vc2289 TR:Q9KPS3 (EMBL:AE004300) (367 aa) fasta scores: E(): 0%2C 65.0%25 id in 337 aa;gbkey=CDS;gene=apbE;inference=similar to sequence:INSDC:AE004300;product=thiamine biosynthesis lipoprotein;protein_id=CAL21828.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3599651	3600589	.	-	.	ID=id7746;Note=Pfam match to entry PF02424 ApbE%2C %2C score 397.30%2CE-value 1.4e-115;gbkey=misc_feature;gene=apbE;inference=protein motif:PF02424
AL590842.1	EMBL	sequence_feature	3600554	3600586	.	-	.	ID=id7747;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=apbE;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	3600657	3601880	.	-	.	ID=gene3182;Name=nqr6;gbkey=Gene;gene=nqr6;gene_biotype=protein_coding;gene_synonym=nqrF;locus_tag=YPO3235
AL590842.1	EMBL	CDS	3600657	3601880	.	-	0	ID=cds3138;Parent=gene3182;Dbxref=GOA:Q8ZBZ5,InterPro:IPR001041,InterPro:IPR001433,InterPro:IPR001709,InterPro:IPR008333,InterPro:IPR010205,InterPro:IPR012675,InterPro:IPR017927,InterPro:IPR017938,NCBI_GP:CAL21829.1;Name=CAL21829.1;Note=Similar to Vibrio alginolyticus NADH-uniquinone oxidoreductase subunit F NqrF or Nqr6 TR:Q56584 (EMBL:AB008030) (407 aa) fasta scores: E(): 0%2C 80.3%25 id in 407 aa%2C and to Neisseria meningitidis putative NADH-uniquinone oxidoreductase subunit F NqrF or Nma0747 TR:Q9JVQ3 (EMBL:AL162754) (405 aa) fasta scores: E(): 0%2C79.4%25 id in 407 aa;gbkey=CDS;gene=nqr6;inference=similar to sequence:INSDC:AL162754;product=NADH-uniquinone oxidoreductase subunit F;protein_id=CAL21829.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3600714	3601067	.	-	.	ID=id7748;Note=Pfam match to entry PF00175 oxidored_fad%2COxidoreductase FAD/NAD-binding domain%2C score 103.50%2CE-value 4.2e-27;gbkey=misc_feature;gene=nqr6;inference=protein motif:PF00175
AL590842.1	EMBL	sequence_feature	3601533	3601781	.	-	.	ID=id7749;Note=Pfam match to entry PF00111 fer2%2C 2Fe-2S iron-sulfur cluster binding domains%2C score 52.40%2C E-value 9.7e-12;gbkey=misc_feature;gene=nqr6;inference=protein motif:PF00111
AL590842.1	EMBL	gene	3601896	3602492	.	-	.	ID=gene3183;Name=nqr5;gbkey=Gene;gene=nqr5;gene_biotype=protein_coding;gene_synonym=nqrE;locus_tag=YPO3236
AL590842.1	EMBL	CDS	3601896	3602492	.	-	0	ID=cds3139;Parent=gene3183;Dbxref=GOA:Q0WC50,InterPro:IPR003667,InterPro:IPR010967,UniProtKB/TrEMBL:Q0WC50,NCBI_GP:CAL21830.1;Name=CAL21830.1;Note=Similar to Vibrio alginolyticus Na+-translocating NADH-quinone reductase NqrE or Nqr5 SW:NQRE_VIBAL (Q56589) (198 aa) fasta scores: E(): 0%2C 84.8%25 id in 198 aa%2C and to Vibrio cholerae Na+-translocating NADH-quinone reductase NqrE or Vc2291 TR:Q9X4Q7 (EMBL:AF117331) (198 aa) fasta scores: E(): 0%2C 84.8%25 id in 198 aa. Similar to YPO1935 (66.0%25 identity in 197 aa overlap);gbkey=CDS;gene=nqr5;inference=similar to sequence:INSDC:AF117331;product=Na+-translocating NADH-quinone reductase subunit E;protein_id=CAL21830.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3601902	3601967	.	-	.	ID=id7750;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=nqr5;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3602013	3602078	.	-	.	ID=id7751;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=nqr5;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3602115	3602180	.	-	.	ID=id7752;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=nqr5;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3602211	3602267	.	-	.	ID=id7753;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=nqr5;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3602304	3602369	.	-	.	ID=id7754;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=nqr5;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3602400	3602459	.	-	.	ID=id7755;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=nqr5;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3602499	3603128	.	-	.	ID=gene3184;Name=nqr4;gbkey=Gene;gene=nqr4;gene_biotype=protein_coding;gene_synonym=nqrD;locus_tag=YPO3237
AL590842.1	EMBL	CDS	3602499	3603128	.	-	0	ID=cds3140;Parent=gene3184;Dbxref=GOA:Q8ZBZ3,InterPro:IPR003667,InterPro:IPR011292,NCBI_GP:CAL21831.1;Name=CAL21831.1;Note=Similar to Vibrio alginolyticus unidentified protein of Na+-translocating NADH-quinone reductase NqrD or Nqr4 TR:Q57095 (EMBL:Z37111) (210 aa) fasta scores: E(): 0%2C76.3%25 id in 207 aa%2C and to Vibrio cholerae NqrD or Vc2292 TR:Q9X4Q6 (EMBL:AF117331) (210 aa) fasta scores: E(): 0%2C76.8%25 id in 207 aa;gbkey=CDS;gene=nqr4;inference=similar to sequence:INSDC:Z37111;product=Na+-translocating NADH-quinone reductase subunit D;protein_id=CAL21831.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3602535	3602600	.	-	.	ID=id7756;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=nqr4;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3602664	3602714	.	-	.	ID=id7757;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=nqr4;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3602760	3602825	.	-	.	ID=id7758;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=nqr4;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3602847	3602912	.	-	.	ID=id7759;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=nqr4;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3602943	3603008	.	-	.	ID=id7760;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=nqr4;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3603121	3603921	.	-	.	ID=gene3185;Name=nqr3;gbkey=Gene;gene=nqr3;gene_biotype=protein_coding;gene_synonym=nqrC;locus_tag=YPO3238
AL590842.1	EMBL	CDS	3603121	3603921	.	-	0	ID=cds3141;Parent=gene3185;Dbxref=GOA:Q8ZBZ2,InterPro:IPR007329,InterPro:IPR010204,NCBI_GP:CAL21832.1;Name=CAL21832.1;Note=Similar to Vibrio alginolyticus gamma subunit of Na+-translocating NADH-quinone reductase subunit C NqrC or Nqr3 TR:Q56582 (EMBL:AB008030) (256 aa) fasta scores: E(): 0%2C 59.0%25 id in 256 aa%2C and to Vibrio cholerae NqrC or Vc2293 TR:Q9X4Q5 (EMBL:AF117331) (257 aa) fasta scores: E(): 0%2C 59.8%25 id in 256 aa;gbkey=CDS;gene=nqr3;inference=similar to sequence:INSDC:AF117331;product=Na+-translocating NADH-quinone reductase subunit C;protein_id=CAL21832.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3603418	3603441	.	-	.	ID=id7761;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=nqr3;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3603814	3603870	.	-	.	ID=id7762;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=nqr3;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3603911	3605152	.	-	.	ID=gene3186;Name=nqr2;gbkey=Gene;gene=nqr2;gene_biotype=protein_coding;gene_synonym=nqrB;locus_tag=YPO3239
AL590842.1	EMBL	CDS	3603911	3605152	.	-	0	ID=cds3142;Parent=gene3186;Dbxref=GOA:Q8ZBZ1,InterPro:IPR004338,InterPro:IPR010966,NCBI_GP:CAL21833.1;Name=CAL21833.1;Note=Similar to Vibrio alginolyticus NADH-ubiquinone oxidoreductase subunit B NqrB or Nqr2 TR:Q56587 (EMBL:Z37111) (426 aa) fasta scores: E(): 0%2C 76.9%25 id in 411 aa%2C and to Vibrio harveyi NqrB TR:Q9RFW0 (EMBL:AF165980) (413 aa) fasta scores: E(): 0%2C 76.3%25 id in 409 aa;gbkey=CDS;gene=nqr2;inference=similar to sequence:INSDC:Z37111;product=NADH-ubiquinone oxidoreductase subunit B;protein_id=CAL21833.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3603950	3604015	.	-	.	ID=id7763;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=nqr2;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3604028	3604078	.	-	.	ID=id7764;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=nqr2;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3604118	3604174	.	-	.	ID=id7765;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=nqr2;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3604205	3604261	.	-	.	ID=id7766;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=nqr2;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3604283	3604348	.	-	.	ID=id7767;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=nqr2;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3604610	3604675	.	-	.	ID=id7768;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=nqr2;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3604712	3604777	.	-	.	ID=id7769;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=nqr2;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3604913	3604978	.	-	.	ID=id7770;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=nqr2;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3605156	3606499	.	-	.	ID=gene3187;Name=nqr1;gbkey=Gene;gene=nqr1;gene_biotype=protein_coding;gene_synonym=nqrA;locus_tag=YPO3240
AL590842.1	EMBL	CDS	3605156	3606499	.	-	0	ID=cds3143;Parent=gene3187;Dbxref=GOA:Q8ZBZ0,InterPro:IPR008703,InterPro:IPR022615,NCBI_GP:CAL21834.1;Name=CAL21834.1;Note=Similar to Vibrio alginolyticus NADH-ubiquinone oxidoreductase subunit A NqrA or Nqr1 TR:Q56586 (EMBL:Z37111) (446 aa) fasta scores: E(): 0%2C 63.8%25 id in 447 aa%2C and to Vibrio harveyi NqrA TR:Q9RFW1 (EMBL:AF165980) (446 aa) fasta scores: E(): 0%2C 63.5%25 id in 447 aa;gbkey=CDS;gene=nqr1;inference=similar to sequence:INSDC:Z37111;product=NADH-ubiquinone oxidoreductase subunit A;protein_id=CAL21834.1;transl_table=11
AL590842.1	EMBL	gene	3606995	3607735	.	+	.	ID=gene3188;Name=yafK;gbkey=Gene;gene=yafK;gene_biotype=protein_coding;locus_tag=YPO3241
AL590842.1	EMBL	CDS	3606995	3607735	.	+	0	ID=cds3144;Parent=gene3188;Dbxref=GOA:Q0WC45,InterPro:IPR005490,UniProtKB/TrEMBL:Q0WC45,NCBI_GP:CAL21835.1;Name=CAL21835.1;Note=Similar to Escherichia coli hypothetical 28.0 kDa protein in gmhA-dinJ intergenic region precursor YafK SW:YAFK_ECOLI (Q47148) (246 aa) fasta scores: E(): 0%2C 58.1%25 id in 246 aa;gbkey=CDS;gene=yafK;product=putative exported protein;protein_id=CAL21835.1;transl_table=11
AL590842.1	EMBL	gene	3607700	3608473	.	-	.	ID=gene3189;Name=YPO3242;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3242
AL590842.1	EMBL	CDS	3607700	3608473	.	-	0	ID=cds3145;Parent=gene3189;Dbxref=GOA:Q7CK64,InterPro:IPR017932,InterPro:IPR026869,InterPro:IPR029055,UniProtKB/TrEMBL:Q7CK64,NCBI_GP:CAL21836.1;Name=CAL21836.1;Note=Similar to Escherichia coli hypothetical protein YafJ SW:YAFJ_ECOLI (Q47147) (255 aa) fasta scores: E(): 0%2C86.2%25 id in 254 aa%2C and to Vibrio cholerae hypothetical protein VC2229 TR:Q9KPY3 (EMBL:AE004294) (281 aa) fasta scores: E(): 0%2C 72.0%25 id in 254 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004294;product=conserved hypothetical protein;protein_id=CAL21836.1;transl_table=11
AL590842.1	EMBL	gene	3608676	3609257	.	-	.	ID=gene3190;Name=gmhA;gbkey=Gene;gene=gmhA;gene_biotype=protein_coding;gene_synonym=lpcA,tfrA;locus_tag=YPO3243
AL590842.1	EMBL	CDS	3608676	3609257	.	-	0	ID=cds3146;Parent=gene3190;Dbxref=GOA:Q8ZBY7,InterPro:IPR001347,InterPro:IPR004515,NCBI_GP:CAL21837.1;Name=CAL21837.1;Note=Similar to Escherichia coli phosphoheptose isomerase LpcA or GmhA or TfrA SW:LPCA_ECOLI (P51001) (192 aa) fasta scores: E(): 0%2C 90.6%25 id in 192 aa%2C and to Vibrio cholerae phosphoheptose isomerase Vc2230 TR:Q9KPY2 (EMBL:AE004294) (191 aa) fasta scores: E(): 0%2C 84.2%25 id in 190 aa. Similar to YPO3550 (44.0%25 identity in 168 aa overlap);gbkey=CDS;gene=gmhA;inference=similar to sequence:INSDC:AE004294;product=phosphoheptose isomerase;protein_id=CAL21837.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3608682	3609146	.	-	.	ID=id7771;Note=Pfam match to entry PF01380 SIS%2C SIS domain%2C score 153.80%2C E-value 2.9e-42;gbkey=misc_feature;gene=gmhA;inference=protein motif:PF01380
AL590842.1	EMBL	gene	3609497	3611944	.	+	.	ID=gene3191;Name=yafH;gbkey=Gene;gene=yafH;gene_biotype=protein_coding;locus_tag=YPO3244
AL590842.1	EMBL	CDS	3609497	3611944	.	+	0	ID=cds3147;Parent=gene3191;Dbxref=GOA:Q8ZBY6,InterPro:IPR006091,InterPro:IPR009075,InterPro:IPR009100,InterPro:IPR013786,InterPro:IPR015396,NCBI_GP:CAL21838.1;Name=CAL21838.1;Note=Similar to Escherichia coli hypothetical 87.0 kDa protein in dnaQ-gmhA intergenic region YafH SW:YAFH_ECOLI (Q47146) (794 aa) fasta scores: E(): 0%2C 81.1%25 id in 795 aa%2Cand to Vibrio cholerae oxidoreductase%2C acyl-CoA dehydrogenase family Vc2231 TR:Q9KPY1 (EMBL:AE004295) (814 aa) fasta scores: E(): 0%2C 67.4%25 id in 815 aa;gbkey=CDS;gene=yafH;inference=similar to sequence:INSDC:AE004295;product=probable acyl-CoA dehydrogenase;protein_id=CAL21838.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3609539	3609607	.	+	.	ID=id7772;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=yafH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3609620	3609679	.	+	.	ID=id7773;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=yafH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3609950	3610252	.	+	.	ID=id7774;Note=Pfam match to entry PF00441 Acyl-CoA_dh%2C Acyl-CoA dehydrogenase%2C score 51.70%2C E-value 2.4e-14;gbkey=misc_feature;gene=yafH;inference=protein motif:PF00441
AL590842.1	EMBL	gene	3612116	3612862	.	-	.	ID=gene3192;Name=YPO3245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3245
AL590842.1	EMBL	CDS	3612116	3612862	.	-	0	ID=cds3148;Parent=gene3192;Dbxref=GOA:Q7CK65,InterPro:IPR004356,UniProtKB/TrEMBL:Q7CK65,NCBI_GP:CAL21839.1;Name=CAL21839.1;Note=The C-terminal region of this CDS shares some similarity (~~30%25) with a wide range of Escherichia coli adhesin%2C fimbrial%2C pilus and surface antigen regulatory proteins. Similar to Escherichia coli major pilu subunit operon regulatory protein PapB SW:PAPB_ECOLI (P04744) (104 aa) fasta scores: E(): 0.0009%2C 32.1%25 id in 78 aa;gbkey=CDS;product=hypothetical protein;protein_id=CAL21839.1;transl_table=11
AL590842.1	EMBL	gene	3612864	3614717	.	-	.	ID=gene3193;Name=hmwC;gbkey=Gene;gene=hmwC;gene_biotype=protein_coding;locus_tag=YPO3246
AL590842.1	EMBL	CDS	3612864	3614717	.	-	0	ID=cds3149;Parent=gene3193;Dbxref=UniProtKB/TrEMBL:Q7CK66,NCBI_GP:CAL21840.1;Name=CAL21840.1;Note=Similar to Haemophilus influenzae putative accessory processing protein Hmw2C TR:Q48030 (EMBL:U08875) (650 aa) fasta scores: E(): 0%2C 43.7%25 id in 625 aa%2C and to H. influenzae HmwC TR:Q9RNI1 (EMBL:AF180945) (650 aa) fasta scores: E(): 0%2C 44.5%25 id in 605 aa. The H. influenzae HmwC protein is involved in the localization of adhesin in the outer membrane;gbkey=CDS;gene=hmwC;inference=similar to sequence:INSDC:U08875;product=putative accessory processing protein;protein_id=CAL21840.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3614403	3614453	.	-	.	ID=id7775;Note=PS00237 G-protein coupled receptors signature.;gbkey=misc_feature;gene=hmwC;inference=protein motif:ProSite:PS00237
AL590842.1	EMBL	gene	3614872	3620604	.	-	.	ID=gene3194;Name=hmwA;gbkey=Gene;gene=hmwA;gene_biotype=protein_coding;locus_tag=YPO3247
AL590842.1	EMBL	CDS	3614872	3620604	.	-	0	ID=cds3150;Parent=gene3194;Dbxref=InterPro:IPR006626,InterPro:IPR008638,InterPro:IPR011050,InterPro:IPR012334,InterPro:IPR024973,UniProtKB/TrEMBL:Q0WC39,NCBI_GP:CAL21841.1;Name=CAL21841.1;Note=Similar to Haemophilus influenzae adhesin HmwA TR:Q9RNI2 (EMBL:AF180944) (1557 aa) fasta scores: E(): 4.6e-30%2C 26.0%25 id in 1628 aa%2C and to Haemophilus influenzae adhesin Hmw2A TR:Q48028 (EMBL:U08875) (1477 aa) fasta scores: E(): 6.6e-28%2C 25.7%25 id in 1600 aa;gbkey=CDS;gene=hmwA;inference=similar to sequence:INSDC:U08875;product=putative adhesin;protein_id=CAL21841.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3618172	3618195	.	-	.	ID=id7776;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=hmwA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3620398	3620463	.	-	.	ID=id7777;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=hmwA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3620645	3622435	.	-	.	ID=gene3195;Name=hxuB;gbkey=Gene;gene=hxuB;gene_biotype=protein_coding;locus_tag=YPO3248
AL590842.1	EMBL	CDS	3620645	3622435	.	-	0	ID=cds3151;Parent=gene3195;Dbxref=InterPro:IPR013686,UniProtKB/TrEMBL:Q7CK67,NCBI_GP:CAL21842.1;Name=CAL21842.1;Note=Similar to Haemophilus influenzae heme/hemopexin utilization protein B HxuB SW:HXB2_HAEIN (P45356) (565 aa) fasta scores: E(): 0%2C 29.6%25 id in 568 aa%2C and to Haemophilus influenzae putative accessory processing protein Hmw2B TR:Q48029 (EMBL:U08875) (545 aa) fasta scores: E(): 1.2e-07%2C 20.3%25 id in 517 aa;gbkey=CDS;gene=hxuB;inference=similar to sequence:INSDC:U08875;product=putative surface-exposed protein;protein_id=CAL21842.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3622358	3622390	.	-	.	ID=id7778;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=hxuB;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	3623524	3624816	.	-	.	ID=gene3196;Name=YPO3249;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3249
AL590842.1	EMBL	CDS	3623524	3624816	.	-	0	ID=cds3152;Parent=gene3196;Dbxref=GOA:Q0WC37,InterPro:IPR001261,InterPro:IPR002933,InterPro:IPR010158,InterPro:IPR011650,UniProtKB/TrEMBL:Q0WC37,NCBI_GP:CAL21843.1;Name=CAL21843.1;Note=Similar to Bacillus stearothermophilus N-carbamoyl-L-amino acid amidohydrolase AmaB SW:AMB1_BACST (P37113) (409 aa) fasta scores: E(): 0%2C 40.7%25 id in 391 aa%2Cand to Deinococcus radiodurans N-carbamyl-L-amino acid amidohydrolase Dr1154 TR:Q9RV75 (EMBL:AE001965) (416 aa) fasta scores: E(): 0%2C 41.5%25 id in 405 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE001965;product=putative amino acid hydrolase;protein_id=CAL21843.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3623722	3624522	.	-	.	ID=id7779;Note=Pfam match to entry PF01546 Peptidase_M20%2C Peptidase family M20/M25/M40%2C score 20.00%2C E-value 8.3e-05;gbkey=misc_feature;inference=protein motif:PF01546
AL590842.1	EMBL	sequence_feature	3624541	3624603	.	-	.	ID=id7780;Note=Pfam match to entry PF01546 Peptidase_M20%2C Peptidase family M20/M25/M40%2C score 5.10%2C E-value 1.5;gbkey=misc_feature;inference=protein motif:PF01546
AL590842.1	EMBL	sequence_feature	3624541	3624570	.	-	.	ID=id7781;Note=PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS00758
AL590842.1	EMBL	pseudogene	3627211	3628119	.	-	.	ID=gene3197;Name=YPO3250;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO3250;part=1/2;pseudo=true
AL590842.1	EMBL	pseudogene	3624816	3625250	.	-	.	ID=gene3197;Name=YPO3250;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO3250;part=2/2;pseudo=true
AL590842.1	EMBL	CDS	3627211	3628119	.	-	0	ID=cds3153;Parent=gene3197;Dbxref=PSEUDO:CAL21844.1;Note=This CDS is disrupted by the insertion of the insertion sequence IS100. The full length CDS is similar to Bacillus halodurans aspartate transaminase Bh0762 TR:Q9KET7 (EMBL:AP001509) (416 aa) fasta scores: E(): 0%2C 52.5%25 id in 406 aa%2C and to Xenopus laevis putative alanine:glyoxylate aminotransferase Agt TR:CAC17015 (EMBL:AJ278065) (415 aa) fasta scores: E(): 6.2e-27%2C 31.9%25 id in 392 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001509;product=putative amino acid transaminase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	CDS	3624816	3625250	.	-	0	ID=cds3153;Parent=gene3197;Dbxref=PSEUDO:CAL21844.1;Note=This CDS is disrupted by the insertion of the insertion sequence IS100. The full length CDS is similar to Bacillus halodurans aspartate transaminase Bh0762 TR:Q9KET7 (EMBL:AP001509) (416 aa) fasta scores: E(): 0%2C 52.5%25 id in 406 aa%2C and to Xenopus laevis putative alanine:glyoxylate aminotransferase Agt TR:CAC17015 (EMBL:AJ278065) (415 aa) fasta scores: E(): 6.2e-27%2C 31.9%25 id in 392 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001509;product=putative amino acid transaminase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	3625252	3625257	.	+	.	ID=id7782;Note=Sequence duplication around IS insertion;gbkey=misc_feature
AL590842.1	EMBL	repeat_region	3625258	3627211	.	+	.	ID=id7783;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	3625258	3625285	.	+	.	ID=id7784;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	3625344	3626366	.	+	.	ID=gene3198;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO3251
AL590842.1	EMBL	CDS	3625344	3626366	.	+	0	ID=cds3154;Parent=gene3198;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL21845.1;Name=CAL21845.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL21845.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3625368	3625451	.	+	.	ID=id7785;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	sequence_feature	3625395	3625460	.	+	.	ID=id7786;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	3625689	3626222	.	+	.	ID=id7787;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	gene	3626363	3627145	.	+	.	ID=gene3199;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO3252
AL590842.1	EMBL	CDS	3626363	3627145	.	+	0	ID=cds3155;Parent=gene3199;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL21846.1;Name=CAL21846.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL21846.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3626531	3627070	.	+	.	ID=id7788;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	3626690	3626713	.	+	.	ID=id7789;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	INVERTED	3627184	3627211	.	-	.	ID=id7790;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	sequence_feature	3627212	3627217	.	+	.	ID=id7791;Note=Sequence duplication around IS insertion;gbkey=misc_feature
AL590842.1	EMBL	gene	3628151	3628897	.	-	.	ID=gene3200;Name=YPO3254;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3254
AL590842.1	EMBL	CDS	3628151	3628897	.	-	0	ID=cds3156;Parent=gene3200;Dbxref=GOA:Q7CK70,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CK70,NCBI_GP:CAL21847.1;Name=CAL21847.1;Note=Similar to Bacillus stearothermophilus glutamine transport ATP-binding protein GlnQ SW:GLNQ_BACST (P27675) (242 aa) fasta scores: E(): 0%2C 54.0%25 id in 239 aa%2C and to Archaeoglobus fulgidus glutamine ABC transporter%2CATP-binding protein Af0680 TR:O29577 (EMBL:AE001058) (242 aa) fasta scores: E(): 0%2C 55.6%25 id in 241 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE001058;product=putative amino acid ABC transporter%2C ATP-binding protein;protein_id=CAL21847.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3628256	3628813	.	-	.	ID=id7792;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 238.80%2C E-value 7.8e-68;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	3628439	3628483	.	-	.	ID=id7793;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	3628769	3628792	.	-	.	ID=id7794;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3628878	3629531	.	-	.	ID=gene3201;Name=YPO3255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3255
AL590842.1	EMBL	CDS	3628878	3629531	.	-	0	ID=cds3157;Parent=gene3201;Dbxref=GOA:Q7CK71,InterPro:IPR000515,InterPro:IPR010065,UniProtKB/TrEMBL:Q7CK71,NCBI_GP:CAL21848.1;Name=CAL21848.1;Note=Similar to Escherichia coli hypothetical amino-acid ABC transporter permease protein YecS SW:YECS_ECOLI (P76315) (222 aa) fasta scores: E(): 6.3e-21%2C 36.3%25 id in 204 aa%2C and to Thermotoga maritima amino acid ABC transporter%2C permease protein Tm0592 TR:Q9WZ61 (EMBL:AE001734) (216 aa) fasta scores: E(): 4.3e-20%2C 36.3%25 id in 201 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE001734;product=putative amino acid ABC transporter%2C permease protein;protein_id=CAL21848.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3628932	3628997	.	-	.	ID=id7795;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3628992	3629213	.	-	.	ID=id7796;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 48.40%2C E-value 1.6e-10;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	3629043	3629108	.	-	.	ID=id7797;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3629196	3629261	.	-	.	ID=id7798;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3629292	3629357	.	-	.	ID=id7799;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3629528	3630196	.	-	.	ID=gene3202;Name=YPO3256;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3256
AL590842.1	EMBL	CDS	3629528	3630196	.	-	0	ID=cds3158;Parent=gene3202;Dbxref=GOA:Q7CK72,InterPro:IPR000515,InterPro:IPR010065,UniProtKB/TrEMBL:Q7CK72,NCBI_GP:CAL21849.1;Name=CAL21849.1;Note=Similar to Thermotoga maritima amino acid ABC transporter%2C permease protein Tm0592 TR:Q9WZ61 (EMBL:AE001734) (216 aa) fasta scores: E(): 1.3e-25%2C 43.6%25 id in 204 aa%2C and to Deinococcus radiodurans amino acid ABC transporter%2C permease protein Dr1028 TR:Q9RVK0 (EMBL:AE001954) (216 aa) fasta scores: E(): 8.4e-24%2C 39.6%25 id in 202 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE001954;product=putative amino acid ABC transporter%2C permease protein;protein_id=CAL21849.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3629570	3629635	.	-	.	ID=id7800;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3629642	3629863	.	-	.	ID=id7801;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 37.00%2C E-value 4.3e-07;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	3629699	3629764	.	-	.	ID=id7802;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3629774	3629860	.	-	.	ID=id7803;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	3629942	3630007	.	-	.	ID=id7804;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3630071	3630136	.	-	.	ID=id7805;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3630209	3630997	.	-	.	ID=gene3203;Name=YPO3257;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3257
AL590842.1	EMBL	CDS	3630209	3630997	.	-	0	ID=cds3159;Parent=gene3203;Dbxref=GOA:Q7CK73,InterPro:IPR001638,InterPro:IPR018313,UniProtKB/TrEMBL:Q7CK73,NCBI_GP:CAL21850.1;Name=CAL21850.1;Note=Similar to Helicobacter pylori amino acid binding protein CjaA TR:Q9RNF9 (EMBL:AF181878) (287 aa) fasta scores: E(): 2.5e-18%2C 32.5%25 id in 228 aa%2C and to Pseudomonas aeruginosa probable binding protein component of ABC transporter Pa2204 TR:AAG05592 (EMBL:AE004647) (268 aa) fasta scores: E(): 1.1e-19%2C 34.5%25 id in 252 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF181878;product=putative amino acid ABC transporter%2C periplasmic protein;protein_id=CAL21850.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3630242	3630997	.	-	.	ID=id7806;Note=Pfam match to entry PF00497 SBP_bac_3%2C Bacterial extracellular solute-binding proteins%2C family 3%2C score 137.90%2C E-value 1.8e-37;gbkey=misc_feature;inference=protein motif:PF00497
AL590842.1	EMBL	sequence_feature	3630785	3630826	.	-	.	ID=id7807;Note=PS01039 Bacterial extracellular solute-binding proteins%2C family 3 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01039
AL590842.1	EMBL	gene	3631108	3631323	.	-	.	ID=gene3204;Name=YPO3258;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3258
AL590842.1	EMBL	CDS	3631108	3631323	.	-	0	ID=cds3160;Parent=gene3204;Dbxref=UniProtKB/TrEMBL:Q0WC30,NCBI_GP:CAL21851.1;Name=CAL21851.1;Note=no significant database matches;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL21851.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3631129	3631182	.	-	.	ID=id7808;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3631195	3631260	.	-	.	ID=id7809;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3631325	3632170	.	-	.	ID=gene3205;Name=YPO3259;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3259
AL590842.1	EMBL	CDS	3631325	3632170	.	-	0	ID=cds3161;Parent=gene3205;Dbxref=GOA:Q7CK74,InterPro:IPR000281,InterPro:IPR001347,InterPro:IPR009057,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CK74,NCBI_GP:CAL21852.1;Name=CAL21852.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA5506 TR:AAG08891 (EMBL:AE004963) (285 aa) fasta scores: E(): 2.8e-11%2C 26.0%25 id in 281 aa%2C and to Bacillus halodurans BH2940 protein TR:Q9K8R3 (EMBL:AP001517) (284 aa) fasta scores: E(): 6.7e-11%2C 23.1%25 id in 277 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001517;product=putative rpiR-family transcriptional regulatory protein;protein_id=CAL21852.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3631385	3631798	.	-	.	ID=id7810;Note=Pfam match to entry PF01380 SIS%2C SIS domain%2C score -0.70%2C E-value 0.095;gbkey=misc_feature;inference=protein motif:PF01380
AL590842.1	EMBL	sequence_feature	3631808	3632155	.	-	.	ID=id7811;Note=Pfam match to entry PF01418 HTH_6%2C Helix-turn-helix domain%2C rpiR family%2C score 27.50%2C E-value 1e-05;gbkey=misc_feature;inference=protein motif:PF01418
AL590842.1	EMBL	sequence_feature	3631988	3632053	.	-	.	ID=id7812;Note=Predicted helix-turn-helix motif with score 2101 (+6.34 SD) at aa 40-61%2C sequence YNSAELARLSGVSKATVSRLFK;gbkey=misc_feature
AL590842.1	EMBL	gene	3632468	3632671	.	+	.	ID=gene3206;Name=YPO3260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3260
AL590842.1	EMBL	CDS	3632468	3632671	.	+	0	ID=cds3162;Parent=gene3206;Dbxref=InterPro:IPR025148,UniProtKB/TrEMBL:Q0WC28,NCBI_GP:CAL21853.1;Name=CAL21853.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21853.1;transl_table=11
AL590842.1	EMBL	gene	3632668	3634065	.	+	.	ID=gene3207;Name=YPO3261;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3261
AL590842.1	EMBL	CDS	3632668	3634065	.	+	0	ID=cds3163;Parent=gene3207;Dbxref=GOA:Q7CK75,InterPro:IPR000120,InterPro:IPR014087,InterPro:IPR023631,UniProtKB/TrEMBL:Q7CK75,NCBI_GP:CAL21854.1;Name=CAL21854.1;Note=Similar to Mycobacterium smegmatis nicotinamidase/pyrazinamidase PzaA TR:Q9ZHK8 (EMBL:AF058285) (468 aa) fasta scores: E(): 0%2C 34.4%25 id in 453 aa%2C and to Rhodococcus sp. enantiomerase-selective amidase AmdA TR:Q53116 (EMBL:M74531) (462 aa) fasta scores: E(): 0%2C 33.8%25 id in 461 aa;gbkey=CDS;inference=similar to sequence:INSDC:M74531;product=probable amidase;protein_id=CAL21854.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3632740	3634002	.	+	.	ID=id7813;Note=Pfam match to entry PF01425 Amidase%2C Amidase%2C score 365.90%2C E-value 4.3e-106;gbkey=misc_feature;inference=protein motif:PF01425
AL590842.1	EMBL	gene	3634094	3634561	.	+	.	ID=gene3208;Name=YPO3262;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3262
AL590842.1	EMBL	CDS	3634094	3634561	.	+	0	ID=cds3164;Parent=gene3208;Dbxref=InterPro:IPR024507,UniProtKB/TrEMBL:Q7CK76,NCBI_GP:CAL21855.1;Name=CAL21855.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21855.1;transl_table=11
AL590842.1	EMBL	gene	3634789	3635988	.	+	.	ID=gene3209;Name=YPO3263;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3263
AL590842.1	EMBL	CDS	3634789	3635988	.	+	0	ID=cds3165;Parent=gene3209;Dbxref=GOA:Q7CK77,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q7CK77,NCBI_GP:CAL21856.1;Name=CAL21856.1;Note=Similar to Escherichia coli from bases 2796594 to 2807377 TR:P76629 (EMBL:AE000352) (305 aa) fasta scores: E(): 0%2C 71.5%25 id in 305 aa%2C and to Pseudomonas aeruginosa hypothetical protein Pa1352 TR:AAG04741 (EMBL:AE004564) (403 aa) fasta scores: E(): 0%2C 45.3%25 id in 382 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004564;product=probable sugar transporter;protein_id=CAL21856.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3634822	3634890	.	+	.	ID=id7814;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3634828	3635985	.	+	.	ID=id7815;Note=Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporter%2C score -95.00%2C E-value 0.0018;gbkey=misc_feature;inference=protein motif:PF00083
AL590842.1	EMBL	sequence_feature	3634933	3635001	.	+	.	ID=id7816;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3635020	3635079	.	+	.	ID=id7817;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3635089	3635157	.	+	.	ID=id7818;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3635194	3635253	.	+	.	ID=id7819;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3635281	3635349	.	+	.	ID=id7820;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3635440	3635508	.	+	.	ID=id7821;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3635518	3635586	.	+	.	ID=id7822;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3635623	3635682	.	+	.	ID=id7823;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3635692	3635751	.	+	.	ID=id7824;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3635800	3635868	.	+	.	ID=id7825;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3635878	3635946	.	+	.	ID=id7826;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3636148	3636921	.	+	.	ID=gene3210;Name=YPO3264;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3264
AL590842.1	EMBL	CDS	3636148	3636921	.	+	0	ID=cds3166;Parent=gene3210;Dbxref=InterPro:IPR011606,UniProtKB/TrEMBL:Q7CK78,NCBI_GP:CAL21857.1;Name=CAL21857.1;Note=Similar to Bacillus subtilis branched-chain amino acid transport protein AzlC SW:AZLC_BACSU (O07942) (254 aa) fasta scores: E(): 1.4e-11%2C 28.2%25 id in 245 aa%2C and to Escherichia coli hypothetical 26.1 kDa protein in proX-mprA intergenic region YgaZ SW:YGAZ_ECOLI (P76630) (245 aa) fasta scores: E(): 0%2C 70.9%25 id in 237 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative amino acid transporter;protein_id=CAL21857.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3636220	3636279	.	+	.	ID=id7827;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3636226	3636300	.	+	.	ID=id7828;Note=PS00043 Bacterial regulatory proteins%2C gntR family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00043
AL590842.1	EMBL	sequence_feature	3636322	3636390	.	+	.	ID=id7829;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3636571	3636639	.	+	.	ID=id7830;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3636667	3636735	.	+	.	ID=id7831;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3636769	3636837	.	+	.	ID=id7832;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3636918	3637259	.	+	.	ID=gene3211;Name=YPO3265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3265
AL590842.1	EMBL	CDS	3636918	3637259	.	+	0	ID=cds3167;Parent=gene3211;Dbxref=InterPro:IPR008407,UniProtKB/TrEMBL:Q7CK79,NCBI_GP:CAL21858.1;Name=CAL21858.1;Note=Similar to Escherichia coli hypothetical 12.0 kDa protein in proX-emrR intergenic region YgaH SW:YGAH_ECOLI (P43667) (111 aa) fasta scores: E(): 7.9e-22%2C 54.4%25 id in 114 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL21858.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3636930	3636983	.	+	.	ID=id7833;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3637044	3637112	.	+	.	ID=id7834;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3637140	3637208	.	+	.	ID=id7835;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3637431	3637943	.	+	.	ID=gene3212;Name=emrR;gbkey=Gene;gene=emrR;gene_biotype=protein_coding;gene_synonym=mprA;locus_tag=YPO3266
AL590842.1	EMBL	CDS	3637431	3637943	.	+	0	ID=cds3168;Parent=gene3212;Dbxref=GOA:Q0WC22,InterPro:IPR000835,InterPro:IPR011991,InterPro:IPR023187,UniProtKB/TrEMBL:Q0WC22,NCBI_GP:CAL21859.1;Name=CAL21859.1;Note=Similar to Escherichia coli transcriptional repressor MprA or EmrR SW:MPRA_ECOLI (P24201) (176 aa) fasta scores: E(): 0%2C 80.1%25 id in 166 aa%2C and to Salmonella typhimurium negative regulator of emr locus EmrR TR:P74870 (EMBL:U62713) (149 aa) fasta scores: E(): 0%2C 77.7%25 id in 148 aa;gbkey=CDS;gene=emrR;inference=similar to sequence:INSDC:U62713;product=MarR-family transcriptional regulatory protein;protein_id=CAL21859.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3637587	3637904	.	+	.	ID=id7836;Note=Pfam match to entry PF01047 MarR%2C MarR family%2C score 123.80%2C E-value 3.1e-33;gbkey=misc_feature;gene=emrR;inference=protein motif:PF01047
AL590842.1	EMBL	sequence_feature	3637689	3637793	.	+	.	ID=id7837;Note=PS01117 Bacterial regulatory proteins%2C marR family signature.;gbkey=misc_feature;gene=emrR;inference=protein motif:ProSite:PS01117
AL590842.1	EMBL	gene	3638327	3639499	.	+	.	ID=gene3213;Name=emrA;gbkey=Gene;gene=emrA;gene_biotype=protein_coding;locus_tag=YPO3267
AL590842.1	EMBL	CDS	3638327	3639499	.	+	0	ID=cds3169;Parent=gene3213;Dbxref=GOA:Q0WC21,InterPro:IPR005694,InterPro:IPR006143,UniProtKB/TrEMBL:Q0WC21,NCBI_GP:CAL21860.1;Name=CAL21860.1;Note=Similar to Escherichia coli multidrug resistance protein A EmrA SW:EMRA_ECOLI (P27303) (390 aa) fasta scores: E(): 0%2C 69.7%25 id in 389 aa%2C and to Haemophilus influenzae multidrug resistance protein A homolog EmrA or Hi0898 SW:EMRA_HAEIN (P44928) (390 aa) fasta scores: E(): 0%2C 47.8%25 id in 389 aa;gbkey=CDS;gene=emrA;product=multidrug resistance protein A;protein_id=CAL21860.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3638393	3638461	.	+	.	ID=id7838;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=emrA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3638504	3639355	.	+	.	ID=id7839;Note=Pfam match to entry PF00529 HlyD%2C HlyD family secretion protein%2C score 268.30%2C E-value 1e-76;gbkey=misc_feature;gene=emrA;inference=protein motif:PF00529
AL590842.1	EMBL	gene	3639538	3641073	.	+	.	ID=gene3214;Name=emrB;gbkey=Gene;gene=emrB;gene_biotype=protein_coding;locus_tag=YPO3268
AL590842.1	EMBL	CDS	3639538	3641073	.	+	0	ID=cds3170;Parent=gene3214;Dbxref=GOA:Q7CK80,InterPro:IPR001411,InterPro:IPR004638,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q7CK80,NCBI_GP:CAL21861.1;Name=CAL21861.1;Note=Similar to Escherichia coli multidrug resistance protein B EmrB SW:EMRB_ECOLI (P27304) (512 aa) fasta scores: E(): 0%2C 84.1%25 id in 509 aa%2C and to Haemophilus influenzae multidrug resistance protein B homolog Emrb or hi0897 SW:EMRB_HAEIN (P44927) (510 aa) fasta scores: E(): 0%2C 70.2%25 id in 497 aa;gbkey=CDS;gene=emrB;inference=protein motif:TMHMM:2.0;product=multidrug resistance protein B;protein_id=CAL21861.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3639574	3640731	.	+	.	ID=id7840;Note=Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporter%2C score -93.00%2C E-value 0.0015;gbkey=misc_feature;gene=emrB;inference=protein motif:PF00083
AL590842.1	EMBL	sequence_feature	3639574	3639642	.	+	.	ID=id7841;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=emrB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3639685	3639753	.	+	.	ID=id7842;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=emrB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3639772	3639840	.	+	.	ID=id7843;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=emrB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3639850	3639918	.	+	.	ID=id7844;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=emrB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3639952	3640020	.	+	.	ID=id7845;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=emrB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3640033	3640101	.	+	.	ID=id7846;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=emrB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3640135	3640191	.	+	.	ID=id7847;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=emrB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3640234	3640287	.	+	.	ID=id7848;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=emrB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3640348	3640407	.	+	.	ID=id7849;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=emrB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3640435	3640503	.	+	.	ID=id7850;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=emrB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3640540	3640593	.	+	.	ID=id7851;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=emrB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3640636	3640704	.	+	.	ID=id7852;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=emrB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3640972	3641028	.	+	.	ID=id7853;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=emrB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3641196	3642362	.	-	.	ID=gene3215;Name=yfiF;gbkey=Gene;gene=yfiF;gene_biotype=protein_coding;locus_tag=YPO3269
AL590842.1	EMBL	CDS	3641196	3642362	.	-	0	ID=cds3171;Parent=gene3215;Dbxref=GOA:Q0WC19,InterPro:IPR001537,InterPro:IPR013123,InterPro:IPR016479,InterPro:IPR029026,InterPro:IPR029028,InterPro:IPR029064,UniProtKB/TrEMBL:Q0WC19,NCBI_GP:CAL21862.1;Name=CAL21862.1;Note=Similar to Escherichia coli hypothetical tRNA/rRNA methyltransferase YfiF SW:YFIF_ECOLI (P33635) (345 aa) fasta scores: E(): 0%2C 60.1%25 id in 388 aa%2C and to Haemophilus influenzae hypothetical tRNA/rRNA methyltransferase Hi0424 SW:YFIF_HAEIN (P44703) (351 aa) fasta scores: E(): 6.8e-33%2C 34.8%25 id in 359 aa. This CDS contains a large insertion at its N-terminal end relative to E. coli;gbkey=CDS;gene=yfiF;product=putative tRNA/rRNA methyltransferase;protein_id=CAL21862.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3641229	3641651	.	-	.	ID=id7854;Note=Pfam match to entry PF00588 SpoU_methylase%2C SpoU rRNA Methylase family%2C score 168.20%2C E-value 1.4e-46;gbkey=misc_feature;gene=yfiF;inference=protein motif:PF00588
AL590842.1	EMBL	gene	3642614	3643051	.	+	.	ID=gene3216;Name=trxC;gbkey=Gene;gene=trxC;gene_biotype=protein_coding;locus_tag=YPO3270
AL590842.1	EMBL	CDS	3642614	3643051	.	+	0	ID=cds3172;Parent=gene3216;Dbxref=GOA:Q7CK81,InterPro:IPR005746,InterPro:IPR012336,InterPro:IPR013766,InterPro:IPR017937,PDB:3P2A,UniProtKB/TrEMBL:Q7CK81,NCBI_GP:CAL21863.1;Name=CAL21863.1;Note=Similar to Escherichia coli thioredoxin 2 TrxC SW:THI2_ECOLI (P33636) (139 aa) fasta scores: E(): 0%2C 77.7%25 id in 139 aa%2C and to Vibrio cholerae thioredoxin 2 Vca0752 TR:Q9KLJ2 (EMBL:AE004403) (144 aa) fasta scores: E(): 0%2C53.6%25 id in 140 aa;gbkey=CDS;gene=trxC;inference=similar to sequence:INSDC:AE004403;product=thioredoxin 2;protein_id=CAL21863.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3642713	3643033	.	+	.	ID=id7855;Note=Pfam match to entry PF00085 thiored%2C Thioredoxin%2Cscore 122.80%2C E-value 1e-35;gbkey=misc_feature;gene=trxC;inference=protein motif:PF00085
AL590842.1	EMBL	sequence_feature	3642779	3642835	.	+	.	ID=id7856;Note=PS00194 Thioredoxin family active site.;gbkey=misc_feature;gene=trxC;inference=protein motif:ProSite:PS00194
AL590842.1	EMBL	gene	3643221	3643970	.	+	.	ID=gene3217;Name=YPO3271;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3271
AL590842.1	EMBL	CDS	3643221	3643970	.	+	0	ID=cds3173;Parent=gene3217;Dbxref=InterPro:IPR005636,UniProtKB/TrEMBL:Q7CK82,NCBI_GP:CAL21864.1;Name=CAL21864.1;Note=Similar to Escherichia coli hypothetical protein YfiP SW:YFIP_ECOLI (Q47319) (232 aa) fasta scores: E(): 0%2C61.6%25 id in 232 aa%2C and to Pseudomonas putida hypothetical protein TR:Q9KHT4 (EMBL:AF249735) (236 aa) fasta scores: E(): 0%2C 50.2%25 id in 229 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF249735;product=conserved hypothetical protein;protein_id=CAL21864.1;transl_table=11
AL590842.1	EMBL	gene	3644013	3646655	.	+	.	ID=gene3218;Name=yfiQ;gbkey=Gene;gene=yfiQ;gene_biotype=protein_coding;locus_tag=YPO3272
AL590842.1	EMBL	CDS	3644013	3646655	.	+	0	ID=cds3174;Parent=gene3218;Dbxref=GOA:Q0WC16,InterPro:IPR000182,InterPro:IPR003781,InterPro:IPR011761,InterPro:IPR016040,InterPro:IPR016102,InterPro:IPR016181,UniProtKB/TrEMBL:Q0WC16,NCBI_GP:CAL21865.1;Name=CAL21865.1;Note=Similar to Escherichia coli hypothetical 98.0 kDa protein in ung-pssA intergenic region YfiQ SW:YFIQ_ECOLI (P76594) (886 aa) fasta scores: E(): 0%2C 75.5%25 id in 880 aa%2Cand to Vibrio cholerae hypothetical protein Vca0574 TR:Q9KM15 (EMBL:AE004388) (893 aa) fasta scores: E(): 0%2C55.2%25 id in 889 aa%2C and to Entamoeba histolytica acetyl-CoA synthetase TR:Q9NAT4 (EMBL:AF286346) (713 aa) fasta scores: E(): 0%2C 34.0%25 id in 702 aa;gbkey=CDS;gene=yfiQ;inference=similar to sequence:INSDC:AF286346;product=putative acetyltransferase;protein_id=CAL21865.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3646377	3646604	.	+	.	ID=id7857;Note=Pfam match to entry PF00583 Acetyltransf%2CAcetyltransferase (GNAT) family%2C score 70.80%2C E-value 2.8e-17;gbkey=misc_feature;gene=yfiQ;inference=protein motif:PF00583
AL590842.1	EMBL	gene	3646828	3648186	.	+	.	ID=gene3219;Name=pss;gbkey=Gene;gene=pss;gene_biotype=protein_coding;gene_synonym=pssA;locus_tag=YPO3273
AL590842.1	EMBL	CDS	3646828	3648186	.	+	0	ID=cds3175;Parent=gene3219;Dbxref=GOA:Q0WC15,InterPro:IPR001736,InterPro:IPR016270,InterPro:IPR025202,UniProtKB/TrEMBL:Q0WC15,NCBI_GP:CAL21866.1;Name=CAL21866.1;Note=Similar to Escherichia coli CDP-diacylglycerol--serine O-phosphatidyltransferase PssA or Pss SW:PSS_ECOLI (P23830) (451 aa) fasta scores: E(): 0%2C74.1%25 id in 451 aa%2C and to Haemophilus influenzae CDP-diacylglycerol--serine O-phosphatidyltransferase PssA or Hi0425 SW:PSS_HAEIN (P44704) (455 aa) fasta scores: E(): 0%2C 50.1%25 id in 457 aa;gbkey=CDS;gene=pss;product=CDP-diacylglycerol--serine O-phosphatidyltransferase;protein_id=CAL21866.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3647227	3647307	.	+	.	ID=id7858;Note=Pfam match to entry PF00614 PLDc%2C Phospholipase D. Active site motif%2C score 29.10%2C E-value 0.00011;gbkey=misc_feature;gene=pss;inference=protein motif:PF00614
AL590842.1	EMBL	sequence_feature	3647884	3647967	.	+	.	ID=id7859;Note=Pfam match to entry PF00614 PLDc%2C Phospholipase D. Active site motif%2C score 31.60%2C E-value 1.8e-05;gbkey=misc_feature;gene=pss;inference=protein motif:PF00614
AL590842.1	EMBL	gene	3648248	3648589	.	+	.	ID=gene3220;Name=YPO3274;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3274
AL590842.1	EMBL	CDS	3648248	3648589	.	+	0	ID=cds3176;Parent=gene3220;Dbxref=InterPro:IPR017028,InterPro:IPR018736,UniProtKB/TrEMBL:Q7CK83,NCBI_GP:CAL21867.1;Name=CAL21867.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein Pa0488 TR:AAG03877 (EMBL:AE004486) (106 aa) fasta scores: E(): 3.9e-23%2C 55.7%25 id in 106 aa%2C and to Escherichia coli hypothetical 9.9 kDa protein in pssA-kgtP intergenic region YfiM SW:YFIM_ECOLI (P46126) (90 aa) fasta scores: E(): 8.3e-22%2C 59.3%25 id in 86 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004486;product=putative lipoprotein;protein_id=CAL21867.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3648281	3648313	.	+	.	ID=id7860;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	3648969	3649202	.	-	.	ID=gene3221;Name=5S_rRNA;gbkey=Gene;gene=5S_rRNA;gene_biotype=rRNA
AL590842.1	EMBL	rRNA	3648969	3649202	.	-	.	ID=rna67;Parent=gene3221;Note=match to 5SrRNA 1..234 blast score 1149 percent identity 99 (incl. 23S-5S spacer);gbkey=rRNA;gene=5S_rRNA
AL590842.1	EMBL	exon	3648969	3649202	.	-	.	ID=id7861;Parent=rna67;Note=match to 5SrRNA 1..234 blast score 1149 percent identity 99 (incl. 23S-5S spacer);gbkey=rRNA;gene=5S_rRNA
AL590842.1	EMBL	gene	3649202	3652108	.	-	.	ID=gene3222;Name=23S_rRNA;gbkey=Gene;gene=23S_rRNA;gene_biotype=rRNA
AL590842.1	EMBL	rRNA	3649202	3652108	.	-	.	ID=rna68;Parent=gene3222;Note=match to 23S_rRNA 1..2906 (Y. enterocolitica 23S EMBL:U77925 );gbkey=rRNA;gene=23S_rRNA
AL590842.1	EMBL	exon	3649202	3652108	.	-	.	ID=id7862;Parent=rna68;Note=match to 23S_rRNA 1..2906 (Y. enterocolitica 23S EMBL:U77925 );gbkey=rRNA;gene=23S_rRNA
AL590842.1	EMBL	tRNA	3652327	3652402	.	-	.	ID=rna69;Note=tRNA Ala anticodon TGC%2C Cove score 93.97;gbkey=tRNA;product=tRNA-Ala
AL590842.1	EMBL	exon	3652327	3652402	.	-	.	ID=id7863;Parent=rna69;Note=tRNA Ala anticodon TGC%2C Cove score 93.97;gbkey=tRNA;product=tRNA-Ala
AL590842.1	EMBL	tRNA	3652454	3652530	.	-	.	ID=rna70;Note=tRNA Ile anticodon GAT%2C Cove score 94.77;gbkey=tRNA;product=tRNA-Ile
AL590842.1	EMBL	exon	3652454	3652530	.	-	.	ID=id7864;Parent=rna70;Note=tRNA Ile anticodon GAT%2C Cove score 94.77;gbkey=tRNA;product=tRNA-Ile
AL590842.1	EMBL	gene	3652660	3654148	.	-	.	ID=gene3223;Name=16S_rRNA;gbkey=Gene;gene=16S_rRNA;gene_biotype=rRNA
AL590842.1	EMBL	rRNA	3652660	3654148	.	-	.	ID=rna71;Parent=gene3223;Note=match to 16S_rRNA 1..14789 (EMBL:YPE16SA);gbkey=rRNA;gene=16S_rRNA
AL590842.1	EMBL	exon	3652660	3654148	.	-	.	ID=id7865;Parent=rna71;Note=match to 16S_rRNA 1..14789 (EMBL:YPE16SA);gbkey=rRNA;gene=16S_rRNA
AL590842.1	EMBL	gene	3654692	3657265	.	-	.	ID=gene3224;Name=clpB;gbkey=Gene;gene=clpB;gene_biotype=protein_coding;gene_synonym=htpM;locus_tag=YPO3275
AL590842.1	EMBL	CDS	3654692	3657265	.	-	0	ID=cds3177;Parent=gene3224;Dbxref=GOA:Q74X11,InterPro:IPR001270,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR004176,InterPro:IPR017730,InterPro:IPR018368,InterPro:IPR019489,InterPro:IPR023150,InterPro:IPR027417,InterPro:IPR028299,NCBI_GP:CAL21868.1;Name=CAL21868.1;Note=Similar to Escherichia coli ClpB protein%2C which is thought to form part of a multi-chaperone system supressing protein aggregation%2C SW:CLPB_ECOLI (P03815) (857 aa) fasta scores: E(): 0%2C 86.6%25 id in 857 aa and to secondary endosymbiont of Glycaspis brimblecombei ClpB protease TR:Q9KHC1 (EMBL:AF263561) (857 aa) fasta scores: E(): 0%2C83.4%25 id in 857 aa;gbkey=CDS;gene=clpB;inference=similar to sequence:INSDC:AF263561;product=Clp ATPase;protein_id=CAL21868.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3655319	3655375	.	-	.	ID=id7866;Note=PS00871 Chaperonins clpA/B signature 2.;gbkey=misc_feature;gene=clpB;inference=protein motif:ProSite:PS00871
AL590842.1	EMBL	sequence_feature	3655430	3655453	.	-	.	ID=id7867;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=clpB;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3655697	3655720	.	-	.	ID=id7868;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=clpB;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3656081	3656665	.	-	.	ID=id7869;Note=Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA)%2C score 55.90%2CE-value 9e-13;gbkey=misc_feature;gene=clpB;inference=protein motif:PF00004
AL590842.1	EMBL	sequence_feature	3656348	3656386	.	-	.	ID=id7870;Note=PS00870 Chaperonins clpA/B signature 1.;gbkey=misc_feature;gene=clpB;inference=protein motif:ProSite:PS00870
AL590842.1	EMBL	sequence_feature	3656627	3656650	.	-	.	ID=id7871;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=clpB;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3657395	3658126	.	-	.	ID=gene3225;Name=YPO3276;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3276
AL590842.1	EMBL	CDS	3657395	3658126	.	-	0	ID=cds3178;Parent=gene3225;Dbxref=InterPro:IPR003730,InterPro:IPR011324,UniProtKB/TrEMBL:Q7CK84,NCBI_GP:CAL21869.1;Name=CAL21869.1;Note=Similar to Escherichia coli hypothetical protein YfiH SW:YFIH_ECOLI (P33644) (243 aa) fasta scores: E(): 0%2C62.6%25 id in 243 aa%2C and to secondary endosymbiont of Glycaspis brimblecombei hypothetical protein YfiH TR:Q9KHC2 (EMBL:AF263561) (244 aa) fasta scores: E(): 0%2C 59.3%25 id in 243 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF263561;product=conserved hypothetical protein;protein_id=CAL21869.1;transl_table=11
AL590842.1	EMBL	gene	3658128	3659105	.	-	.	ID=gene3226;Name=rluD;gbkey=Gene;gene=rluD;gene_biotype=protein_coding;gene_synonym=sfhB;locus_tag=YPO3277
AL590842.1	EMBL	CDS	3658128	3659105	.	-	0	ID=cds3179;Parent=gene3226;Dbxref=GOA:Q8ZBV7,InterPro:IPR002942,InterPro:IPR006145,InterPro:IPR006224,InterPro:IPR006225,InterPro:IPR020103,NCBI_GP:CAL21870.1;Name=CAL21870.1;Note=Similar to Escherichia coli ribosomal large subunit pseudouridine synthase D RluD or SfhB SW:RLUD_ECOLI (P33643) (326 aa) fasta scores: E(): 0%2C 84.0%25 id in 325 aa%2Cand to secondary endosymbiont of Glycaspis brimblecombei 23S rRNA pseudouridine synthase RluD TR:Q9KHC3 (EMBL:AF263561) (314 aa) fasta scores: E(): 0%2C 79.6%25 id in 313 aa;gbkey=CDS;gene=rluD;inference=similar to sequence:INSDC:AF263561;product=ribosomal large subunit pseudouridine synthase D;protein_id=CAL21870.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3658380	3658832	.	-	.	ID=id7872;Note=Pfam match to entry PF00849 PseudoU_synth_2%2C RNA pseudouridylate synthase%2C score 237.30%2C E-value 2.2e-67;gbkey=misc_feature;gene=rluD;inference=protein motif:PF00849
AL590842.1	EMBL	sequence_feature	3658659	3658703	.	-	.	ID=id7873;Note=PS01129 Rlu family of pseudouridine synthase signature.;gbkey=misc_feature;gene=rluD;inference=protein motif:ProSite:PS01129
AL590842.1	EMBL	sequence_feature	3658911	3659054	.	-	.	ID=id7874;Note=Pfam match to entry PF01479 S4%2C S4 domain%2C score 55.70%2C E-value 9.8e-13;gbkey=misc_feature;gene=rluD;inference=protein motif:PF01479
AL590842.1	EMBL	gene	3659241	3659972	.	+	.	ID=gene3227;Name=yfiO;gbkey=Gene;gene=yfiO;gene_biotype=protein_coding;locus_tag=YPO3278
AL590842.1	EMBL	CDS	3659241	3659972	.	+	0	ID=cds3180;Parent=gene3227;Dbxref=GOA:Q7CK85,InterPro:IPR011990,InterPro:IPR017689,UniProtKB/TrEMBL:Q7CK85,NCBI_GP:CAL21871.1;Name=CAL21871.1;Note=Similar to Escherichia coli hypothetical 27.8 kDa lipoprotein in rluD-pheL intergenic region precursor YfiO SW:YFIO_ECOLI (P77146) (245 aa) fasta scores: E(): 0%2C 84.2%25 id in 241 aa%2C and to Vibrio cholerae hypothetical protein Vc0708 TR:Q9KU21 (EMBL:AE004157) (253 aa) fasta scores: E(): 0%2C 53.8%25 id in 240 aa;gbkey=CDS;gene=yfiO;inference=similar to sequence:INSDC:AE004157;product=putative lipoprotein;protein_id=CAL21871.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3659268	3659300	.	+	.	ID=id7875;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=yfiO;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	3660327	3660689	.	+	.	ID=gene3228;Name=yfiA;gbkey=Gene;gene=yfiA;gene_biotype=protein_coding;locus_tag=YPO3279
AL590842.1	EMBL	CDS	3660327	3660689	.	+	0	ID=cds3181;Parent=gene3228;Dbxref=GOA:Q0WC09,InterPro:IPR003489,UniProtKB/TrEMBL:Q0WC09,NCBI_GP:CAL21872.1;Name=CAL21872.1;Note=Similar to Escherichia coli protein YfiA SW:YFIA_ECOLI (P11285) (112 aa) fasta scores: E(): 1.3e-31%2C79.5%25 id in 112 aa%2C and to Pasteurella multocida hypothetical 12.0 kDa protein Pm0092 TR:AAK02176 (EMBL:AE006044) (105 aa) fasta scores: E(): 5.9e-25%2C 68.3%25 id in 104 aa;gbkey=CDS;gene=yfiA;inference=similar to sequence:INSDC:AE006044;product=putative sigma 54 modulation protein;protein_id=CAL21872.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3660330	3660611	.	+	.	ID=id7876;Note=Pfam match to entry PF02482 Ribosomal_S30%2C %2C score 154.40%2C E-value 2e-42;gbkey=misc_feature;gene=yfiA;inference=protein motif:PF02482
AL590842.1	EMBL	repeat_region	3660912	3661623	.	-	.	ID=id7877;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	3661020	3661478	.	-	.	ID=gene3229;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO3280
AL590842.1	EMBL	CDS	3661020	3661478	.	-	0	ID=cds3182;Parent=gene3229;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL21873.1;Name=CAL21873.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL21873.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3661113	3661424	.	-	.	ID=id7878;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	pseudogene	3661761	3662693	.	+	.	ID=gene3230;Name=pheA;gbkey=Gene;gene=pheA;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO3281;part=1/2;pseudo=true
AL590842.1	EMBL	pseudogene	3664653	3664877	.	+	.	ID=gene3230;Name=pheA;gbkey=Gene;gene=pheA;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO3281;part=2/2;pseudo=true
AL590842.1	EMBL	CDS	3661761	3662693	.	+	0	ID=cds3183;Parent=gene3230;Dbxref=PSEUDO:CAL21874.1;Note=This CDS is disrupted by the insertion of the insertion sequence IS100. The full length CDS is similar to Escherichia coli P-protein [includes: chorismate mutase and prephenate dehydratase] PheA SW:PHEA_ECOLI (P07022) (386 aa) fasta scores: E(): 0%2C 76.8%25 id in 383 aa%2C and to Erwinia herbicola p-protein [includes: chorismate mutase pheA SW:PHEA_ERWHE (Q02286) (387 aa) fasta scores: E(): 0%2C77.5%25 id in 382 aa;gbkey=CDS;gene=pheA;product=P-protein [includes: chorismate mutase and prephenate dehydratase] (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	CDS	3664653	3664877	.	+	0	ID=cds3183;Parent=gene3230;Dbxref=PSEUDO:CAL21874.1;Note=This CDS is disrupted by the insertion of the insertion sequence IS100. The full length CDS is similar to Escherichia coli P-protein [includes: chorismate mutase and prephenate dehydratase] PheA SW:PHEA_ECOLI (P07022) (386 aa) fasta scores: E(): 0%2C 76.8%25 id in 383 aa%2C and to Erwinia herbicola p-protein [includes: chorismate mutase pheA SW:PHEA_ERWHE (Q02286) (387 aa) fasta scores: E(): 0%2C77.5%25 id in 382 aa;gbkey=CDS;gene=pheA;product=P-protein [includes: chorismate mutase and prephenate dehydratase] (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	3661767	3662024	.	+	.	ID=id7879;Note=Pfam match to entry PF01817 Chorismate_mut%2CChorismate mutase%2C score 105.90%2C E-value 7.6e-28;gbkey=misc_feature;gene=pheA;inference=protein motif:PF01817
AL590842.1	EMBL	sequence_feature	3662073	3662621	.	+	.	ID=id7880;Note=Pfam match to entry PF00800 PDT%2C Prephenate dehydratase%2C score 318.80%2C E-value 6.3e-92;gbkey=misc_feature;gene=pheA;inference=protein motif:PF00800
AL590842.1	EMBL	sequence_feature	3662538	3662606	.	+	.	ID=id7881;Note=PS00857 Prephenate dehydratase signature 1.;gbkey=misc_feature;gene=pheA;inference=protein motif:ProSite:PS00857
AL590842.1	EMBL	sequence_feature	3664689	3664712	.	+	.	ID=id7882;Note=PS00858 Prephenate dehydratase signature 2.;gbkey=misc_feature;gene=pheA;inference=protein motif:ProSite:PS00858
AL590842.1	EMBL	sequence_feature	3662690	3662694	.	+	.	ID=id7883;Note=Sequence duplication around IS insertion;gbkey=misc_feature
AL590842.1	EMBL	repeat_region	3662695	3664648	.	+	.	ID=id7884;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	3662695	3662722	.	+	.	ID=id7885;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	3662781	3663803	.	+	.	ID=gene3231;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO3282
AL590842.1	EMBL	CDS	3662781	3663803	.	+	0	ID=cds3184;Parent=gene3231;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL21875.1;Name=CAL21875.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL21875.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3662805	3662888	.	+	.	ID=id7886;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	sequence_feature	3662832	3662897	.	+	.	ID=id7887;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	3663126	3663659	.	+	.	ID=id7888;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	gene	3663800	3664582	.	+	.	ID=gene3232;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO3283
AL590842.1	EMBL	CDS	3663800	3664582	.	+	0	ID=cds3185;Parent=gene3232;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL21876.1;Name=CAL21876.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL21876.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3663968	3664507	.	+	.	ID=id7889;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	3664127	3664150	.	+	.	ID=id7890;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	INVERTED	3664621	3664648	.	-	.	ID=id7891;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	sequence_feature	3664649	3664653	.	+	.	ID=id7892;Note=Sequence duplication around IS insertion;gbkey=misc_feature
AL590842.1	EMBL	gene	3664982	3666103	.	-	.	ID=gene3233;Name=tyrA;gbkey=Gene;gene=tyrA;gene_biotype=protein_coding;locus_tag=YPO3285
AL590842.1	EMBL	CDS	3664982	3666103	.	-	0	ID=cds3186;Parent=gene3233;Dbxref=GOA:Q7CK89,InterPro:IPR002701,InterPro:IPR003099,InterPro:IPR008244,InterPro:IPR008927,InterPro:IPR011277,InterPro:IPR016040,InterPro:IPR020822,UniProtKB/TrEMBL:Q7CK89,NCBI_GP:CAL21877.1;Name=CAL21877.1;Note=Similar to Escherichia coli T-protein [includes: chorismate mutase and prephenate dehydrogenase] TyrA SW:TYRA_ECOLI (P07023) (373 aa) fasta scores: E(): 0%2C 86.9%25 id in 373 aa%2C and to Erwinia herbicola T-protein [includes: chorismate mutase and prephenate dehydrogenase] TyrA SW:TYRA_ERWHE (Q02287) (373 aa) fasta scores: E(): 0%2C 86.0%25 id in 372 aa;gbkey=CDS;gene=tyrA;product=T-protein [includes: chorismate mutase and prephenate dehydrogenase];protein_id=CAL21877.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3665054	3665794	.	-	.	ID=id7893;Note=Pfam match to entry PF02153 PDH%2C Prephenate dehydrogenase%2C score 79.20%2C E-value 8.7e-20;gbkey=misc_feature;gene=tyrA;inference=protein motif:PF02153
AL590842.1	EMBL	sequence_feature	3665843	3666100	.	-	.	ID=id7894;Note=Pfam match to entry PF01817 Chorismate_mut%2CChorismate mutase%2C score 120.40%2C E-value 3.3e-32;gbkey=misc_feature;gene=tyrA;inference=protein motif:PF01817
AL590842.1	EMBL	gene	3666116	3667186	.	-	.	ID=gene3234;Name=aroF;gbkey=Gene;gene=aroF;gene_biotype=protein_coding;locus_tag=YPO3286
AL590842.1	EMBL	CDS	3666116	3667186	.	-	0	ID=cds3187;Parent=gene3234;Dbxref=GOA:Q0WC04,InterPro:IPR006218,InterPro:IPR006219,InterPro:IPR013785,UniProtKB/TrEMBL:Q0WC04,NCBI_GP:CAL21878.1;Name=CAL21878.1;Note=Similar to Escherichia coli phospho-2-dehydro-3-deoxyheptonate aldolase%2C tyr-sensitive AroF SW:AROF_ECOLI (P00888) (356 aa) fasta scores: E(): 0%2C79.8%25 id in 356 aa%2C and to Salmonella typhimurium phospho-2-dehydro-3-deoxyheptonate aldolase%2C tyr-sensitive AroF SW:AROF_SALTY (P21307) (356 aa) fasta scores: E(): 0%2C78.1%25 id in 356 aa. Similar to YPO2411 (53.4%25 identity in 343 aa overlap) and to YPO1130 (52.5%25 identity in 316 aa overlap);gbkey=CDS;gene=aroF;product=phospho-2-dehydro-3-deoxyheptonate aldolase%2Ctyr-sensitive;protein_id=CAL21878.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3666143	3667174	.	-	.	ID=id7895;Note=Pfam match to entry PF00793 DAHP_synth_1%2C DAHP synthetase family%2C score 790.40%2C E-value 6.9e-234;gbkey=misc_feature;gene=aroF;inference=protein motif:PF00793
AL590842.1	EMBL	gene	3667419	3668135	.	+	.	ID=gene3235;Name=YPO3287;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3287
AL590842.1	EMBL	CDS	3667419	3668135	.	+	0	ID=cds3188;Parent=gene3235;Dbxref=GOA:Q8ZBV2,InterPro:IPR001789,InterPro:IPR007492,InterPro:IPR011006,NCBI_GP:CAL21879.1;Name=CAL21879.1;Note=Similar to Vibrio cholerae response regulator VC0693 TR:Q9KU36 (EMBL:AE004155) (237 aa) fasta scores: E(): 0%2C56.4%25 id in 236 aa%2C and to Escherichia coli hypothetical protein YehT SW:YEHT_ECOLI (P33356) (244 aa) fasta scores: E(): 0%2C 57.7%25 id in 239 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004155;product=two-component system response regulator;protein_id=CAL21879.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3667422	3667754	.	+	.	ID=id7896;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 122.10%2C E-value 1e-32;gbkey=misc_feature;inference=protein motif:PF00072
AL590842.1	EMBL	pseudogene	3668564	3669908	.	+	.	ID=gene3236;Name=dcuB;gbkey=Gene;gene=dcuB;gene_biotype=pseudogene;gene_synonym=genF;locus_tag=YPO3288;pseudo=true
AL590842.1	EMBL	CDS	3668564	3669908	.	+	0	ID=cds3189;Parent=gene3236;Note=Similar to Escherichia coli anaerobic C4-dicarboxylate transporter DcuB or GenF SW:DCUB_ECOLI (P14409) (446 aa) fasta scores: E(): 0%2C 57.8%25 id in 446 aa%2Cand to Vibrio cholerae anaerobic C4-dicarboxylate transporter Vca0205 TR:Q9KMW3 (EMBL:AE004360) (442 aa) fasta scores: E(): 0%2C 49.1%25 id in 442 aa. This CDS contains two frameshifts after codons 219 and 341. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=dcuB;inference=similar to sequence:INSDC:AE004360;product=anaerobic C4-dicarboxylate transporter (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	3668582	3668686	.	+	.	ID=id7897;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=dcuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3668714	3668782	.	+	.	ID=id7898;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=dcuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3668843	3668911	.	+	.	ID=id7899;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=dcuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3668969	3669037	.	+	.	ID=id7900;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=dcuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3669071	3669139	.	+	.	ID=id7901;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=dcuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3669370	3669438	.	+	.	ID=id7902;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=dcuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3669457	3669525	.	+	.	ID=id7903;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=dcuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3670231	3670998	.	+	.	ID=gene3237;Name=ydiY;gbkey=Gene;gene=ydiY;gene_biotype=protein_coding;locus_tag=YPO3290
AL590842.1	EMBL	CDS	3670231	3670998	.	+	0	ID=cds3190;Parent=gene3237;Dbxref=InterPro:IPR007433,UniProtKB/TrEMBL:Q0WC02,NCBI_GP:CAL21881.1;Name=CAL21881.1;Note=Similar to Escherichia coli hypothetical 27.6 kDa protein in arpB-pfkB intergenic region precursor YdiY SW:YDIY_ECOLI (P76206) (252 aa) fasta scores: E(): 0%2C 54.2%25 id in 253 aa;gbkey=CDS;gene=ydiY;product=putative exported protein;protein_id=CAL21881.1;transl_table=11
AL590842.1	EMBL	repeat_region	3671193	3671904	.	-	.	ID=id7904;Note=Contains a 'A' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	3671301	3671759	.	-	.	ID=gene3238;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO3291
AL590842.1	EMBL	CDS	3671301	3671759	.	-	0	ID=cds3191;Parent=gene3238;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL21882.1;Name=CAL21882.1;Note=Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL21882.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3671394	3671705	.	-	.	ID=id7905;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	3671971	3672318	.	-	.	ID=gene3239;Name=rplS;gbkey=Gene;gene=rplS;gene_biotype=protein_coding;locus_tag=YPO3292
AL590842.1	EMBL	CDS	3671971	3672318	.	-	0	ID=cds3192;Parent=gene3239;Dbxref=GOA:Q8ZBV0,InterPro:IPR001857,InterPro:IPR008991,InterPro:IPR018257,NCBI_GP:CAL21883.1;Name=CAL21883.1;Note=Similar to Escherichia coli 50S ribosomal protein L19 RplS SW:RL19_ECOLI (P02420) (114 aa) fasta scores: E(): 0%2C 93.8%25 id in 113 aa%2C and to Serratia marcescens 50S ribosomal protein L19 RplS SW:RL19_SERMA (P36243) (117 aa) fasta scores: E(): 0%2C 96.5%25 id in 113 aa;gbkey=CDS;gene=rplS;product=50S ribosomal protein L19;protein_id=CAL21883.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3671977	3672282	.	-	.	ID=id7906;Note=Pfam match to entry PF01245 Ribosomal_L19%2C Ribosomal protein L19%2C score 224.50%2C E-value 1.6e-63;gbkey=misc_feature;gene=rplS;inference=protein motif:PF01245
AL590842.1	EMBL	gene	3672399	3673139	.	-	.	ID=gene3240;Name=trmD;gbkey=Gene;gene=trmD;gene_biotype=protein_coding;locus_tag=YPO3293
AL590842.1	EMBL	CDS	3672399	3673139	.	-	0	ID=cds3193;Parent=gene3240;Dbxref=GOA:Q8ZBU9,InterPro:IPR002649,InterPro:IPR016009,InterPro:IPR023148,InterPro:IPR029026,InterPro:IPR029028,NCBI_GP:CAL21884.1;Name=CAL21884.1;Note=Similar to Escherichia coli tRNA (guanine-N1)-methyltransferase TrmD SW:TRMD_ECOLI (P07020) (255 aa) fasta scores: E(): 0%2C 91.4%25 id in 244 aa%2C and to Serratia marcescens tRNA (guanine-N1)-methyltransferase TrmD SW:TRMD_SERMA (P36244) (255 aa) fasta scores: E(): 0%2C94.7%25 id in 245 aa;gbkey=CDS;gene=trmD;product=tRNA (guanine-N1)-methyltransferase;protein_id=CAL21884.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3672447	3673076	.	-	.	ID=id7907;Note=Pfam match to entry PF01746 tRNA_m1G_MT%2C tRNA (Guanine-1)-methyltransferase%2C score 479.80%2C E-value 2.2e-140;gbkey=misc_feature;gene=trmD;inference=protein motif:PF01746
AL590842.1	EMBL	gene	3673178	3673726	.	-	.	ID=gene3241;Name=rimM;gbkey=Gene;gene=rimM;gene_biotype=protein_coding;locus_tag=YPO3294
AL590842.1	EMBL	CDS	3673178	3673726	.	-	0	ID=cds3194;Parent=gene3241;Dbxref=GOA:Q8ZBU8,InterPro:IPR002676,InterPro:IPR009000,InterPro:IPR011033,InterPro:IPR011961,InterPro:IPR027275,NCBI_GP:CAL21885.1;Name=CAL21885.1;Note=Similar to Escherichia coli 16S rRNA processing protein RimM SW:RIMM_ECOLI (P21504) (182 aa) fasta scores: E(): 0%2C 81.3%25 id in 182 aa%2C and to Salmonella typhimurium 16S rRNA processing protein RimM SW:RIMM_SALTY (P36246) (183 aa) fasta scores: E(): 0%2C 81.4%25 id in 183 aa;gbkey=CDS;gene=rimM;product=16S rRNA processing protein;protein_id=CAL21885.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3673181	3673684	.	-	.	ID=id7908;Note=Pfam match to entry PF01782 RimM%2C RimM%2C score 294.70%2C E-value 1.1e-84;gbkey=misc_feature;gene=rimM;inference=protein motif:PF01782
AL590842.1	EMBL	gene	3673748	3673996	.	-	.	ID=gene3242;Name=rpsP;gbkey=Gene;gene=rpsP;gene_biotype=protein_coding;locus_tag=YPO3295
AL590842.1	EMBL	CDS	3673748	3673996	.	-	0	ID=cds3195;Parent=gene3242;Dbxref=GOA:Q8ZBU7,InterPro:IPR000307,InterPro:IPR020592,InterPro:IPR023803,NCBI_GP:CAL21886.1;Name=CAL21886.1;Note=Similar to Escherichia coli 30S ribosomal protein S16 RpsP SW:RS16_ECOLI (P02372) (82 aa) fasta scores: E(): 5.4e-26%2C 79.3%25 id in 82 aa%2C and to Salmonella typhimurium 30S ribosomal protein S16 RpsP SW:RS16_SALTY (P36242) (82 aa) fasta scores: E(): 8e-27%2C 81.7%25 id in 82 aa;gbkey=CDS;gene=rpsP;product=30S ribosomal protein S16;protein_id=CAL21886.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3673793	3673975	.	-	.	ID=id7909;Note=Pfam match to entry PF00886 Ribosomal_S16%2C Ribosomal protein S16%2C score 117.50%2C E-value 2.5e-31;gbkey=misc_feature;gene=rpsP;inference=protein motif:PF00886
AL590842.1	EMBL	sequence_feature	3673964	3673993	.	-	.	ID=id7910;Note=PS00732 Ribosomal protein S16 signature.;gbkey=misc_feature;gene=rpsP;inference=protein motif:ProSite:PS00732
AL590842.1	EMBL	gene	3674224	3675585	.	-	.	ID=gene3243;Name=ffh;gbkey=Gene;gene=ffh;gene_biotype=protein_coding;locus_tag=YPO3296
AL590842.1	EMBL	CDS	3674224	3675585	.	-	0	ID=cds3196;Parent=gene3243;Dbxref=GOA:Q7CK91,InterPro:IPR000897,InterPro:IPR003593,InterPro:IPR004125,InterPro:IPR004780,InterPro:IPR013822,InterPro:IPR022941,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CK91,NCBI_GP:CAL21887.1;Name=CAL21887.1;Note=Similar to Escherichia coli signal recognition particle protein Ffh SW:SR54_ECOLI (P07019) (453 aa) fasta scores: E(): 0%2C 89.0%25 id in 453 aa%2C and to Haemophilus influenzae signal recognition particle protein Ffh or Hi0106 SW:SR54_HAEIN (P44518) (462 aa) fasta scores: E(): 0%2C 79.4%25 id in 452 aa;gbkey=CDS;gene=ffh;product=signal recognition particle protein;protein_id=CAL21887.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3674701	3675507	.	-	.	ID=id7911;Note=Pfam match to entry PF00448 SRP54%2C SRP54-type protein%2C score 501.40%2C E-value 6.8e-147;gbkey=misc_feature;gene=ffh;inference=protein motif:PF00448
AL590842.1	EMBL	sequence_feature	3674740	3674781	.	-	.	ID=id7912;Note=PS00300 SRP54-type proteins GTP-binding domain signature.;gbkey=misc_feature;gene=ffh;inference=protein motif:ProSite:PS00300
AL590842.1	EMBL	sequence_feature	3674851	3674868	.	-	.	ID=id7913;Note=PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.;gbkey=misc_feature;gene=ffh;inference=protein motif:ProSite:PS00343
AL590842.1	EMBL	sequence_feature	3675244	3675267	.	-	.	ID=id7914;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ffh;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3675649	3676542	.	+	.	ID=gene3244;Name=corE;gbkey=Gene;gene=corE;gene_biotype=protein_coding;locus_tag=YPO3297
AL590842.1	EMBL	CDS	3675649	3676542	.	+	0	ID=cds3197;Parent=gene3244;Dbxref=GOA:Q7CK92,InterPro:IPR002541,UniProtKB/TrEMBL:Q7CK92,NCBI_GP:CAL21888.1;Name=CAL21888.1;Note=Similar to Salmonella typhimurium CorE TR:Q9X619 (EMBL:AF130857) (288 aa) fasta scores: E(): 0%2C 73.7%25 id in 262 aa%2C and to Escherichia coli from bases 2744073 to 2755344 TR:P76599 (EMBL:AE000347) (288 aa) fasta scores: E(): 0%2C 74.8%25 id in 262 aa;gbkey=CDS;gene=corE;inference=similar to sequence:INSDC:AF130857;product=putative membrane protein;protein_id=CAL21888.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3675742	3675810	.	+	.	ID=id7915;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=corE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3675838	3675897	.	+	.	ID=id7916;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=corE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3675934	3676002	.	+	.	ID=id7917;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=corE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3676015	3676083	.	+	.	ID=id7918;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=corE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3676117	3676185	.	+	.	ID=id7919;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=corE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3676273	3676341	.	+	.	ID=id7920;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=corE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3676375	3676428	.	+	.	ID=id7921;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=corE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3676456	3676509	.	+	.	ID=id7922;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=corE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3676611	3677894	.	+	.	ID=gene3245;Name=b2612/b2613;gbkey=Gene;gene=b2612/b2613;gene_biotype=protein_coding;gene_synonym=yfjD;locus_tag=YPO3298
AL590842.1	EMBL	CDS	3676611	3677894	.	+	0	ID=cds3198;Parent=gene3245;Dbxref=GOA:Q7CK93,InterPro:IPR000644,InterPro:IPR002550,InterPro:IPR005170,InterPro:IPR016166,InterPro:IPR016169,UniProtKB/TrEMBL:Q7CK93,NCBI_GP:CAL21889.1;Name=CAL21889.1;Note=Similar to Escherichia coli hypothetical 46.4 kDa protein in ffh-grpE intergenic region YfjD or B2612/B2613 SW:YFJD_ECOLI (P37908) (428 aa) fasta scores: E(): 0%2C 77.2%25 id in 425 aa%2C and to Vibrio cholerae putative hemolysin Vc0558 TR:Q9KUG3 (EMBL:AE004141) (426 aa) fasta scores: E(): 0%2C 63.9%25 id in 418 aa;gbkey=CDS;gene=b2612/b2613;inference=similar to sequence:INSDC:AE004141;product=putative membrane protein;protein_id=CAL21889.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3676623	3676691	.	+	.	ID=id7923;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=b2612/b2613;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3676632	3677183	.	+	.	ID=id7924;Note=Pfam match to entry PF01595 DUF21%2C Domain of unknown function DUF21%2C score 234.40%2C E-value 1.6e-66;gbkey=misc_feature;gene=b2612/b2613;inference=protein motif:PF01595
AL590842.1	EMBL	sequence_feature	3676797	3676865	.	+	.	ID=id7925;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=b2612/b2613;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3676893	3676949	.	+	.	ID=id7926;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=b2612/b2613;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3676983	3677051	.	+	.	ID=id7927;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=b2612/b2613;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3677235	3677399	.	+	.	ID=id7928;Note=Pfam match to entry PF00571 CBS%2C CBS domain%2C score 12.80%2C E-value 1.3;gbkey=misc_feature;gene=b2612/b2613;inference=protein motif:PF00571
AL590842.1	EMBL	sequence_feature	3677430	3677591	.	+	.	ID=id7929;Note=Pfam match to entry PF00571 CBS%2C CBS domain%2C score 21.60%2C E-value 0.019;gbkey=misc_feature;gene=b2612/b2613;inference=protein motif:PF00571
AL590842.1	EMBL	repeat_region	3677924	3678635	.	-	.	ID=id7930;Note=Contains a 'A' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	3678032	3678490	.	-	.	ID=gene3246;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO3299
AL590842.1	EMBL	CDS	3678032	3678490	.	-	0	ID=cds3199;Parent=gene3246;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL21890.1;Name=CAL21890.1;Note=Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL21890.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3678125	3678436	.	-	.	ID=id7931;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	3678694	3679209	.	-	.	ID=gene3247;Name=luxS;gbkey=Gene;gene=luxS;gene_biotype=protein_coding;locus_tag=YPO3300
AL590842.1	EMBL	CDS	3678694	3679209	.	-	0	ID=cds3200;Parent=gene3247;Dbxref=GOA:Q8ZBU3,InterPro:IPR003815,InterPro:IPR011249,NCBI_GP:CAL21891.1;Name=CAL21891.1;Note=Similar to Vibrio harveyi bioluminescence-regulating%2C quorum sensing autoinducer-2 production protein LuxS SW:LUXS_VIBHA (Q9Z5X1) (171 aa) fasta scores: E(): 0%2C 77.1%25 id in 170 aa%2C and to Escherichia coli autoinducer-2 production protein LuxS SW:LUXS_ECOLI (P45578) (170 aa) fasta scores: E(): 0%2C 88.2%25 id in 170 aa. The molecule produced by this class of quorum signal generators is distinct from the the N-acylhomoserine lactones class of quourm signal molecules (autoinducer-1).;gbkey=CDS;gene=luxS;product=autoinducer-2 production protein;protein_id=CAL21891.1;transl_table=11
AL590842.1	EMBL	gene	3679377	3680936	.	-	.	ID=gene3248;Name=b2688;gbkey=Gene;gene=b2688;gene_biotype=protein_coding;gene_synonym=gsh-I,gshA;locus_tag=YPO3301
AL590842.1	EMBL	CDS	3679377	3680936	.	-	0	ID=cds3201;Parent=gene3248;Dbxref=GOA:Q8ZBU2,InterPro:IPR006334,InterPro:IPR007370,NCBI_GP:CAL21892.1;Name=CAL21892.1;Note=Similar to Escherichia coli glutamate--cysteine ligase GshA or Gsh-I or B2688 SW:GSH1_ECOLI (P06980) (518 aa) fasta scores: E(): 0%2C 74.3%25 id in 518 aa%2C and to Salmonella typhimurium glutamate--cysteine ligase GshA SW:GSH1_SALTY (O68838) (518 aa) fasta scores: E(): 0%2C 76.6%25 id in 518 aa;gbkey=CDS;gene=b2688;product=glutamate--cysteine ligase;protein_id=CAL21892.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3680247	3680270	.	-	.	ID=id7932;Note=PS00030 Eukaryotic putative RNA-binding region RNP-1 signature.;gbkey=misc_feature;gene=b2688;inference=protein motif:ProSite:PS00030
AL590842.1	EMBL	gene	3681019	3681447	.	-	.	ID=gene3249;Name=yqaA;gbkey=Gene;gene=yqaA;gene_biotype=protein_coding;locus_tag=YPO3302
AL590842.1	EMBL	CDS	3681019	3681447	.	-	0	ID=cds3202;Parent=gene3249;Dbxref=InterPro:IPR015414,InterPro:IPR020143,UniProtKB/TrEMBL:Q7CK95,NCBI_GP:CAL21893.1;Name=CAL21893.1;Note=Similar to Escherichia coli hypothetical 15.6 kDa protein in gshA-csrA intergenic region YqaA SW:YQAA_ECOLI (P76631) (142 aa) fasta scores: E(): 6.9e-31%2C 57.7%25 id in 142 aa%2C and to Haemophilus influenzae hypothetical protein Hi0489 SW:YQAA_HAEIN (P44005) (157 aa) fasta scores: E(): 7.6e-18%2C 47.4%25 id in 133 aa;gbkey=CDS;gene=yqaA;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL21893.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3681043	3681108	.	-	.	ID=id7933;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=yqaA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3681130	3681195	.	-	.	ID=id7934;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=yqaA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3681298	3681363	.	-	.	ID=id7935;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=yqaA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3681385	3681435	.	-	.	ID=id7936;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=yqaA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3681444	3682010	.	-	.	ID=gene3250;Name=yqaB;gbkey=Gene;gene=yqaB;gene_biotype=protein_coding;locus_tag=YPO3303
AL590842.1	EMBL	CDS	3681444	3682010	.	-	0	ID=cds3203;Parent=gene3250;Dbxref=GOA:Q7CK96,InterPro:IPR006439,InterPro:IPR010976,InterPro:IPR023198,InterPro:IPR023214,UniProtKB/TrEMBL:Q7CK96,NCBI_GP:CAL21894.1;Name=CAL21894.1;Note=Similar to Escherichia coli hypothetical 20.8 kDa protein in gshA-csrA intergenic region YqaB SW:YQAB_ECOLI (P77475) (188 aa) fasta scores: E(): 0%2C 67.0%25 id in 188 aa%2Cand to Haemophilus influenzae hypothetical protein Hi0488 SW:YQAB_HAEIN (P44004) (200 aa) fasta scores: E(): 2.1e-31%2C46.8%25 id in 188 aa;gbkey=CDS;gene=yqaB;product=putative hydrolase;protein_id=CAL21894.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3681447	3681977	.	-	.	ID=id7937;Note=Pfam match to entry PF00702 Hydrolase%2C haloacid dehalogenase-like hydrolase%2C score 126.30%2C E-value 5.7e-34;gbkey=misc_feature;gene=yqaB;inference=protein motif:PF00702
AL590842.1	EMBL	tRNA	3682605	3682681	.	-	.	ID=rna72;Note=tRNA Arg anticodon ACG%2C Cove score 80.38;gbkey=tRNA;product=tRNA-Arg
AL590842.1	EMBL	exon	3682605	3682681	.	-	.	ID=id7938;Parent=rna72;Note=tRNA Arg anticodon ACG%2C Cove score 80.38;gbkey=tRNA;product=tRNA-Arg
AL590842.1	EMBL	tRNA	3682739	3682815	.	-	.	ID=rna73;Note=tRNA Arg anticodon ACG%2C Cove score 85.08;gbkey=tRNA;product=tRNA-Arg
AL590842.1	EMBL	exon	3682739	3682815	.	-	.	ID=id7939;Parent=rna73;Note=tRNA Arg anticodon ACG%2C Cove score 85.08;gbkey=tRNA;product=tRNA-Arg
AL590842.1	EMBL	tRNA	3682824	3682916	.	-	.	ID=rna74;Note=tRNA Ser anticodon GCT%2C Cove score 73.90;gbkey=tRNA;product=tRNA-Ser
AL590842.1	EMBL	exon	3682824	3682916	.	-	.	ID=id7940;Parent=rna74;Note=tRNA Ser anticodon GCT%2C Cove score 73.90;gbkey=tRNA;product=tRNA-Ser
AL590842.1	EMBL	gene	3683279	3683464	.	-	.	ID=gene3251;Name=csrA;gbkey=Gene;gene=csrA;gene_biotype=protein_coding;gene_synonym=rsmA,zfiA;locus_tag=YPO3304
AL590842.1	EMBL	CDS	3683279	3683464	.	-	0	ID=cds3204;Parent=gene3251;Dbxref=GOA:P63876,InterPro:IPR003751,NCBI_GP:CAL21895.1;Name=CAL21895.1;Note=Similar to Escherichia coli and Salmonella typhimurium carbon storage regulator CsrA SW:CSRA_ECOLI (P31803) (61 aa) fasta scores: E(): 1.2e-22%2C 95.1%25 id in 61 aa%2C and to Erwinia carotovora regulator of extracellular enzymes and pathogenicity RsmA SW:CSRA_ERWCA (Q47620) (61 aa) fasta scores: E(): 2.4e-23%2C 96.7%25 id in 61 aa. CsrA and RsmA are post-transcriptional regulators that bind specific mRNA and alter their stability;gbkey=CDS;gene=csrA;product=carbon storage regulator;protein_id=CAL21895.1;transl_table=11
AL590842.1	EMBL	gene	3683714	3686341	.	-	.	ID=gene3252;Name=alaS;gbkey=Gene;gene=alaS;gene_biotype=protein_coding;gene_synonym=lovB;locus_tag=YPO3305
AL590842.1	EMBL	CDS	3683714	3686341	.	-	0	ID=cds3205;Parent=gene3252;Dbxref=GOA:Q8ZBT8,InterPro:IPR002318,InterPro:IPR003156,InterPro:IPR009000,InterPro:IPR012947,InterPro:IPR018162,InterPro:IPR018163,InterPro:IPR018164,InterPro:IPR018165,InterPro:IPR023033,NCBI_GP:CAL21896.1;Name=CAL21896.1;Note=Similar to Escherichia coli alanyl-tRNA synthetase AlaS or LovB SW:SYA_ECOLI (P00957) (876 aa) fasta scores: E(): 0%2C 82.4%25 id in 875 aa%2C and to Haemophilus influenzae alanyl-tRNA synthetase AlaS or Hi0814 SW:SYA_HAEIN (P43815) (874 aa) fasta scores: E(): 0%2C 68.8%25 id in 873 aa;gbkey=CDS;gene=alaS;product=alanyl-tRNA synthetase;protein_id=CAL21896.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3683735	3683947	.	-	.	ID=id7941;Note=Pfam match to entry PF02272 DHHA1%2C DHHA1 domain%2Cscore 73.20%2C E-value 5.5e-18;gbkey=misc_feature;gene=alaS;inference=protein motif:PF02272
AL590842.1	EMBL	sequence_feature	3684227	3686323	.	-	.	ID=id7942;Note=Pfam match to entry PF01411 tRNA-synt_2c%2C tRNA synthetases class II (A)%2C score 1552.70%2C E-value 0;gbkey=misc_feature;gene=alaS;inference=protein motif:PF01411
AL590842.1	EMBL	sequence_feature	3685601	3685630	.	-	.	ID=id7943;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.;gbkey=misc_feature;gene=alaS;inference=protein motif:ProSite:PS00339
AL590842.1	EMBL	gene	3686481	3687044	.	-	.	ID=gene3253;Name=oraA;gbkey=Gene;gene=oraA;gene_biotype=protein_coding;gene_synonym=recX;locus_tag=YPO3306
AL590842.1	EMBL	CDS	3686481	3687044	.	-	0	ID=cds3206;Parent=gene3253;Dbxref=GOA:P37867,InterPro:IPR003783,InterPro:IPR011991,NCBI_GP:CAL21897.1;Name=CAL21897.1;Note=Similar to Escherichia coli regulatory protein OraA or RecX SW:RECX_ECOLI (P33596) (166 aa) fasta scores: E(): 2.5e-20%2C 45.0%25 id in 180 aa%2C and to Vibrio cholerae regulatory protein RecX or VC0544 SW:RECX_VIBCH (Q56647) (152 aa) fasta scores: E(): 1e-11%2C 41.7%25 id in 120 aa. Contains an insertion at the N-terminal half relative to E. coli;gbkey=CDS;gene=oraA;product=putative regulatory protein;protein_id=CAL21897.1;transl_table=11
AL590842.1	EMBL	gene	3687182	3688252	.	-	.	ID=gene3254;Name=lexB;gbkey=Gene;gene=lexB;gene_biotype=protein_coding;gene_synonym=recA,recH,rnmB,tif,umuB,zab;locus_tag=YPO3307
AL590842.1	EMBL	CDS	3687182	3688252	.	-	0	ID=cds3207;Parent=gene3254;Dbxref=GOA:P37858,InterPro:IPR003593,InterPro:IPR013765,InterPro:IPR020584,InterPro:IPR020587,InterPro:IPR020588,InterPro:IPR023400,InterPro:IPR027417,NCBI_GP:CAL21898.1;Name=CAL21898.1;Note=Similar to Escherichia coli and Shigella flexneri RecA protein RecA or LexB or UmuB or RecH or RnmB or Tif or Zab SW:RECA_ECOLI (P03017) (352 aa) fasta scores: E(): 0%2C87.9%25 id in 355 aa%2C and to the previously sequenced Yersinia pestis RecA protein SW:RECA_YERPE (P37858) (356 aa) fasta scores: E(): 0%2C 99.2%25 id in 356 aa;gbkey=CDS;gene=lexB;product=RecA protein;protein_id=CAL21898.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3687263	3688228	.	-	.	ID=id7944;Note=Pfam match to entry PF00154 recA%2C recA bacterial DNA recombination proteins%2C score 799.40%2C E-value 1.4e-236;gbkey=misc_feature;gene=lexB;inference=protein motif:PF00154
AL590842.1	EMBL	sequence_feature	3687584	3687610	.	-	.	ID=id7945;Note=PS00321 recA signature.;gbkey=misc_feature;gene=lexB;inference=protein motif:ProSite:PS00321
AL590842.1	EMBL	sequence_feature	3687983	3688006	.	-	.	ID=id7946;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=lexB;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3688031	3688054	.	-	.	ID=id7947;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=lexB;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3688367	3688855	.	-	.	ID=gene3255;Name=YPO3308;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3308
AL590842.1	EMBL	CDS	3688367	3688855	.	-	0	ID=cds3208;Parent=gene3255;Dbxref=InterPro:IPR008136,UniProtKB/TrEMBL:Q0WBY4,NCBI_GP:CAL21899.1;Name=CAL21899.1;Note=Similar to Escherichia coli protein YgaD SW:YGAD_ECOLI (P41053) (165 aa) fasta scores: E(): 0%2C 66.7%25 id in 162 aa%2C and to Enterobacter agglomerans hypothetical protein 1 SW:YGAD_ENTAG (P51967) (164 aa) fasta scores: E(): 0%2C 69.8%25 id in 162 aa;gbkey=CDS;product=putative competence-damaged protein;protein_id=CAL21899.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3688373	3688840	.	-	.	ID=id7948;Note=Pfam match to entry PF02464 CinA%2C %2C score 280.70%2CE-value 1.9e-80;gbkey=misc_feature;inference=protein motif:PF02464
AL590842.1	EMBL	gene	3689172	3690512	.	+	.	ID=gene3256;Name=YPO3309;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3309
AL590842.1	EMBL	CDS	3689172	3690512	.	+	0	ID=cds3209;Parent=gene3256;Dbxref=GOA:Q7CK97,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q7CK97,NCBI_GP:CAL21900.1;Name=CAL21900.1;Note=Similar to Pseudomonas aeruginosa probable MFS transporter Pa4887 TR:AAG08272 (EMBL:AE004901) (438 aa) fasta scores: E(): 0%2C 46.2%25 id in 437 aa%2C and to Campylobacter jejuni transmembrane transport protein Cj0850C TR:Q9PP73 (EMBL:AL139076) (395 aa) fasta scores: E(): 2.9e-25%2C 27.1%25 id in 376 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL139076;product=putative membrane protein;protein_id=CAL21900.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3689190	3689258	.	+	.	ID=id7949;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3689268	3689336	.	+	.	ID=id7950;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3689373	3689432	.	+	.	ID=id7951;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3689460	3689528	.	+	.	ID=id7952;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3689562	3689621	.	+	.	ID=id7953;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3689634	3689702	.	+	.	ID=id7954;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3689778	3689846	.	+	.	ID=id7955;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3689874	3689942	.	+	.	ID=id7956;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3689961	3690029	.	+	.	ID=id7957;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3690039	3690107	.	+	.	ID=id7958;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3690144	3690212	.	+	.	ID=id7959;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3690222	3690281	.	+	.	ID=id7960;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3690760	3691704	.	+	.	ID=gene3257;Name=YPO3310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3310
AL590842.1	EMBL	CDS	3690760	3691704	.	+	0	ID=cds3210;Parent=gene3257;Dbxref=GOA:Q7CK98,InterPro:IPR007324,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CK98,NCBI_GP:CAL21901.1;Name=CAL21901.1;Note=Similar to Bacillus subtilis deoxyribonucleoside regulator DeoR SW:DEOR_BACSU (P39140) (313 aa) fasta scores: E(): 1.1e-25%2C 32.4%25 id in 318 aa%2C and to Klebsiella pneumoniae sorbitol operon regulator SorC SW:SORC_KLEPN (P37078) (315 aa) fasta scores: E(): 1e-22%2C 29.1%25 id in 323 aa;gbkey=CDS;product=putative transcriptional regulatory protein;protein_id=CAL21901.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3690823	3690888	.	+	.	ID=id7961;Note=Predicted helix-turn-helix motif with score 2038 (+6.13 SD) at aa 22-43%2C sequence MKQSEIADSLHLSQSFVSRAIT;gbkey=misc_feature
AL590842.1	EMBL	gene	3691926	3693350	.	-	.	ID=gene3258;Name=YPO3311;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3311
AL590842.1	EMBL	CDS	3691926	3693350	.	-	0	ID=cds3211;Parent=gene3258;Dbxref=GOA:Q7CK99,InterPro:IPR009015,InterPro:IPR015888,UniProtKB/TrEMBL:Q7CK99,NCBI_GP:CAL21902.1;Name=CAL21902.1;Note=Similar to Thermotoga maritima hypothetical protein TM0951 TR:Q9X048 (EMBL:AE001758) (471 aa) fasta scores: E(): 0%2C 51.3%25 id in 466 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE001758;product=conserved hypothetical protein;protein_id=CAL21902.1;transl_table=11
AL590842.1	EMBL	gene	3693371	3694858	.	-	.	ID=gene3259;Name=YPO3312;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3312
AL590842.1	EMBL	CDS	3693371	3694858	.	-	0	ID=cds3212;Parent=gene3259;Dbxref=GOA:Q7CKA0,InterPro:IPR018484,InterPro:IPR018485,UniProtKB/TrEMBL:Q7CKA0,NCBI_GP:CAL21903.1;Name=CAL21903.1;Note=Similar to Bacillus subtilis glycerol kinase GlpK SW:GLPK_BACSU (P18157) (496 aa) fasta scores: E(): 0%2C 40.4%25 id in 492 aa%2C and to Thermotoga maritima glycerol kinase 2 GlpK2 or Tm1430 SW:GLK2_THEMA (Q9X1E4) (496 aa) fasta scores: E(): 0%2C 42.6%25 id in 491 aa;gbkey=CDS;product=glycerol kinase;protein_id=CAL21903.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3693518	3693541	.	-	.	ID=id7962;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3693536	3694621	.	-	.	ID=id7963;Note=Pfam match to entry PF00370 FGGY%2C FGGY family of carbohydrate kinases%2C score 302.60%2C E-value 4.7e-87;gbkey=misc_feature;inference=protein motif:PF00370
AL590842.1	EMBL	gene	3694861	3695805	.	-	.	ID=gene3260;Name=YPO3313;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3313
AL590842.1	EMBL	CDS	3694861	3695805	.	-	0	ID=cds3213;Parent=gene3260;Dbxref=GOA:Q74XN1,InterPro:IPR005475,InterPro:IPR005476,InterPro:IPR009014,InterPro:IPR029061,UniProtKB/TrEMBL:Q74XN1,NCBI_GP:CAL21904.1;Name=CAL21904.1;Note=Similar to Methanococcus jannaschii putative transketolase C-terminal section Mj0679 SW:TKTC_METJA (Q58092) (316 aa) fasta scores: E(): 3.8e-30%2C 34.6%25 id in 295 aa%2C and to Bacillus subtilis 1-deoxy-D-xylulose 5-phosphate synthase Dxs SW:DXS_BACSU (P54523) (633 aa) fasta scores: E(): 1.2e-22%2C 34.1%25 id in 249 aa;gbkey=CDS;product=C-terminal region of transketolase;protein_id=CAL21904.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3695110	3695238	.	-	.	ID=id7964;Note=Pfam match to entry PF00456 transketolase%2CTransketolase%2C score 24.20%2C E-value 1.3e-05;gbkey=misc_feature;inference=protein motif:PF00456
AL590842.1	EMBL	gene	3695798	3696628	.	-	.	ID=gene3261;Name=YPO3314;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3314
AL590842.1	EMBL	CDS	3695798	3696628	.	-	0	ID=cds3214;Parent=gene3261;Dbxref=GOA:Q74XN2,InterPro:IPR005474,InterPro:IPR029061,UniProtKB/TrEMBL:Q74XN2,NCBI_GP:CAL21905.1;Name=CAL21905.1;Note=Similar to Methanococcus jannaschii putative transketolase N-terminal section Mj0681 SW:TKTN_METJA (Q58094) (274 aa) fasta scores: E(): 0%2C 40.3%25 id in 273 aa%2Cand to Streptomyces coelicolor transketolase Tkt2 TR:Q9ZC16 (EMBL:AL033505) (615 aa) fasta scores: E(): 1.1e-27%2C 38.4%25 id in 271 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL033505;product=putative N-terminal region of transketolase;protein_id=CAL21905.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3695858	3696535	.	-	.	ID=id7965;Note=Pfam match to entry PF00456 transketolase%2CTransketolase%2C score 84.00%2C E-value 1.8e-21;gbkey=misc_feature;inference=protein motif:PF00456
AL590842.1	EMBL	gene	3696884	3698029	.	-	.	ID=gene3262;Name=rbsC;gbkey=Gene;gene=rbsC;gene_biotype=protein_coding;locus_tag=YPO3315
AL590842.1	EMBL	CDS	3696884	3698029	.	-	0	ID=cds3215;Parent=gene3262;Dbxref=GOA:Q7CKA1,InterPro:IPR001851,UniProtKB/TrEMBL:Q7CKA1,NCBI_GP:CAL21906.1;Name=CAL21906.1;Note=Similar to Escherichia coli ribose transport system permease protein RbsC SW:RBSC_ECOLI (P04984) (321 aa) fasta scores: E(): 0%2C 40.8%25 id in 316 aa%2C and to Bacillus subtilis membrane transport protein RbsC TR:P96731 (EMBL:Z92953) (322 aa) fasta scores: E(): 0%2C 43.9%25 id in 321 aa;gbkey=CDS;gene=rbsC;inference=similar to sequence:INSDC:Z92953;product=putative sugar ABC transporter%2C permease protein;protein_id=CAL21906.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3697004	3697054	.	-	.	ID=id7966;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rbsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3697070	3697126	.	-	.	ID=id7967;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rbsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3697142	3697192	.	-	.	ID=id7968;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rbsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3697223	3697288	.	-	.	ID=id7969;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rbsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3697382	3697447	.	-	.	ID=id7970;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rbsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3697523	3697588	.	-	.	ID=id7971;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rbsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3697604	3697669	.	-	.	ID=id7972;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rbsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3697682	3697747	.	-	.	ID=id7973;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rbsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3697769	3697834	.	-	.	ID=id7974;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rbsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3697850	3697915	.	-	.	ID=id7975;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rbsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3698026	3699549	.	-	.	ID=gene3263;Name=YPO3316;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3316
AL590842.1	EMBL	CDS	3698026	3699549	.	-	0	ID=cds3216;Parent=gene3263;Dbxref=GOA:Q7CKA2,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR004087,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CKA2,NCBI_GP:CAL21907.1;Name=CAL21907.1;Note=Similar to Escherichia coli L-arabinose transport ATP-binding protein AraG SW:ARAG_ECOLI (P08531) (504 aa) fasta scores: E(): 0%2C 39.7%25 id in 486 aa%2C and to E. coli D-xylose transport ATP-binding protein XylG SW:XYLG_ECOLI (P37388) (513 aa) fasta scores: E(): 0%2C 37.3%25 id in 501 aa%2Cand to E. coli ribose transport ATP-binding protein RbsA SW:RBSA_ECOLI (P04983) (501 aa) fasta scores: E(): 0%2C 37.2%25 id in 497 aa%2C and to Escherichia coli galactoside transport ATP-binding protein MglA SW:MGLA_ECOLI (P23199) (506 aa) fasta scores: E(): 0%2C 38.5%25 id in 496 aa;gbkey=CDS;product=putative sugar ABC transporter%2C ATP-binding protein;protein_id=CAL21907.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3698104	3698688	.	-	.	ID=id7976;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 102.90%2C E-value 6.3e-27;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	3698287	3698331	.	-	.	ID=id7977;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	3698887	3699450	.	-	.	ID=id7978;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 177.50%2C E-value 2.2e-49;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	3699406	3699429	.	-	.	ID=id7979;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3699549	3700166	.	-	.	ID=gene3264;Name=YPO3317;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3317
AL590842.1	EMBL	CDS	3699549	3700166	.	-	0	ID=cds3217;Parent=gene3264;Dbxref=InterPro:IPR014582,UniProtKB/TrEMBL:Q9X6A8,NCBI_GP:CAL21908.1;Name=CAL21908.1;Note=Identical to the previously sequenced Yersinia pestis hypothetical 22.2 kDa protein TR:Q9X6A8 (EMBL:AF135170) (205 aa) fasta scores: E(): 0%2C 100.0%25 id in 205 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF135170;product=putative lipoprotein;protein_id=CAL21908.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3700101	3700133	.	-	.	ID=id7980;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	3700259	3701233	.	-	.	ID=gene3265;Name=YPO3318;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3318
AL590842.1	EMBL	CDS	3700259	3701233	.	-	0	ID=cds3218;Parent=gene3265;Dbxref=InterPro:IPR025997,InterPro:IPR028082,UniProtKB/TrEMBL:Q9X6A9,NCBI_GP:CAL21909.1;Name=CAL21909.1;Note=Similar to Escherichia coli D-ribose-binding periplasmic protein precursor RbsB or RbsP or PrlB SW:RBSB_ECOLI (P02925) (296 aa) fasta scores: E(): 1.2e-23%2C31.7%25 id in 300 aa%2C and identical to the previously sequenced Yersinia pestis D-ribose binding protein RbsB TR:Q9X6A9 (EMBL:AF135170) (324 aa) fasta scores: E(): 0%2C100.0%25 id in 324 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF135170;product=putative sugar ABC transporter%2C periplasmic protein;protein_id=CAL21909.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3700385	3701128	.	-	.	ID=id7981;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 60.00%2C E-value 5.2e-14;gbkey=misc_feature;inference=protein motif:PF00532
AL590842.1	EMBL	gene	3701736	3703949	.	+	.	ID=gene3266;Name=katY;gbkey=Gene;gene=katY;gene_biotype=protein_coding;locus_tag=YPO3319
AL590842.1	EMBL	CDS	3701736	3703949	.	+	0	ID=cds3219;Parent=gene3266;Dbxref=GOA:Q9X6B0,InterPro:IPR000763,InterPro:IPR002016,InterPro:IPR010255,InterPro:IPR019793,InterPro:IPR019794,NCBI_GP:CAL21910.1;Name=CAL21910.1;Note=Similar to Escherichia coli EHEC-catalase/peroxidase precursor KatP TR:P77038 (EMBL:X89017) (736 aa) fasta scores: E(): 0%2C 75.3%25 id in 736 aa%2C and identical to the previously sequenced Yersinia pestis peroxidase/catalase katY SW:CATA_YERPE (Q9X6B0) (737 aa) fasta scores: E(): 0%2C100.0%25 id in 737 aa;gbkey=CDS;gene=katY;inference=similar to sequence:INSDC:X89017;product=catalase-peroxidase;protein_id=CAL21910.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3701946	3703160	.	+	.	ID=id7982;Note=Pfam match to entry PF00141 peroxidase%2C Peroxidase%2Cscore 270.80%2C E-value 1.8e-77;gbkey=misc_feature;gene=katY;inference=protein motif:PF00141
AL590842.1	EMBL	sequence_feature	3702015	3702050	.	+	.	ID=id7983;Note=PS00436 Peroxidases active site signature.;gbkey=misc_feature;gene=katY;inference=protein motif:ProSite:PS00436
AL590842.1	EMBL	sequence_feature	3702501	3702533	.	+	.	ID=id7984;Note=PS00435 Peroxidases proximal heme-ligand signature.;gbkey=misc_feature;gene=katY;inference=protein motif:ProSite:PS00435
AL590842.1	EMBL	sequence_feature	3703305	3703343	.	+	.	ID=id7985;Note=PS00018 EF-hand calcium-binding domain.;gbkey=misc_feature;gene=katY;inference=protein motif:ProSite:PS00018
AL590842.1	EMBL	gene	3704026	3704409	.	+	.	ID=gene3267;Name=cybC;gbkey=Gene;gene=cybC;gene_biotype=protein_coding;locus_tag=YPO3320
AL590842.1	EMBL	CDS	3704026	3704409	.	+	0	ID=cds3220;Parent=gene3267;Dbxref=GOA:Q9X6B1,InterPro:IPR009155,InterPro:IPR010980,NCBI_GP:CAL21911.1;Name=CAL21911.1;Note=Similar to Escherichia coli soluble cytochrome B562 precursor CybC SW:C562_ECOLI (P00192) (128 aa) fasta scores: E(): 4.2e-19%2C 46.9%25 id in 128 aa%2C and identical to the previously sequenced Yersinia pestis cytochrome C CybC TR:Q9X6B1 (EMBL:AF135170) (127 aa) fasta scores: E(): 0%2C100.0%25 id in 127 aa;gbkey=CDS;gene=cybC;inference=similar to sequence:INSDC:AF135170;product=putative cytochrome B562;protein_id=CAL21911.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3704047	3704079	.	+	.	ID=id7986;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=cybC;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	3704557	3705087	.	+	.	ID=gene3268;Name=cybB;gbkey=Gene;gene=cybB;gene_biotype=protein_coding;locus_tag=YPO3321
AL590842.1	EMBL	CDS	3704557	3705087	.	+	0	ID=cds3221;Parent=gene3268;Dbxref=GOA:Q9X6B2,InterPro:IPR016174,NCBI_GP:CAL21912.1;Name=CAL21912.1;Note=Similar to Escherichia coli cytochrome B561 CybB SW:C561_ECOLI (P08732) (176 aa) fasta scores: E(): 0%2C 66.3%25 id in 175 aa%2C and identical to the previously sequenced Yersinia pestis probable cytochrome B561 CybB SW:C561_YERPE (Q9X6B2) (176 aa) fasta scores: E(): 0%2C 100.0%25 id in 176 aa;gbkey=CDS;gene=cybB;inference=protein motif:TMHMM:2.0;product=probable cytochrome B561;protein_id=CAL21912.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3704584	3704652	.	+	.	ID=id7987;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=cybB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3704686	3704745	.	+	.	ID=id7988;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=cybB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3704803	3704871	.	+	.	ID=id7989;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=cybB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3704974	3705042	.	+	.	ID=id7990;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=cybB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3705344	3706054	.	-	.	ID=gene3269;Name=YPO3322;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3322
AL590842.1	EMBL	CDS	3705344	3706054	.	-	0	ID=cds3222;Parent=gene3269;Dbxref=GOA:Q9X6B3,InterPro:IPR020945,InterPro:IPR026269,InterPro:IPR028611,UniProtKB/TrEMBL:Q9X6B3,NCBI_GP:CAL21913.1;Name=CAL21913.1;Note=Similar to Escherichia coli hypothetical protein precursor YnfI SW:YNFI_ECOLI (P76174) (207 aa) fasta scores: E(): 1.1e-29%2C 46.1%25 id in 217 aa%2C and identical to the previously sequenced Yersinia pestis hypothetical protein TR:Q9X6B3 (EMBL:AF135170) (236 aa) fasta scores: E(): 0%2C 100.0%25 id in 236 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF135170;product=conserved hypothetical protein;protein_id=CAL21913.1;transl_table=11
AL590842.1	EMBL	gene	3706200	3707060	.	-	.	ID=gene3270;Name=dmsC;gbkey=Gene;gene=dmsC;gene_biotype=protein_coding;locus_tag=YPO3323
AL590842.1	EMBL	CDS	3706200	3707060	.	-	0	ID=cds3223;Parent=gene3270;Dbxref=GOA:Q9X6B4,InterPro:IPR007059,UniProtKB/TrEMBL:Q9X6B4,NCBI_GP:CAL21914.1;Name=CAL21914.1;Note=Similar to Escherichia coli anaerobic dimethyl sulfoxide reductase chain C DmsC SW:DMSC_ECOLI (P18777) (287 aa) fasta scores: E(): 0%2C 66.7%25 id in 285 aa%2C and identical to the previously sequenced to Yersinia pestis dimethyl sulfoxide reductase subunit C DmsC TR:Q9X6B4 (EMBL:AF135170) (286 aa) fasta scores: E(): 0%2C 100.0%25 id in 286 aa;gbkey=CDS;gene=dmsC;inference=similar to sequence:INSDC:AF135170;product=anaerobic dimethyl sulfoxide reductase chain C;protein_id=CAL21914.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3706239	3706304	.	-	.	ID=id7991;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=dmsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3706320	3706385	.	-	.	ID=id7992;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=dmsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3706446	3706511	.	-	.	ID=id7993;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=dmsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3706551	3706616	.	-	.	ID=id7994;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=dmsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3706662	3706718	.	-	.	ID=id7995;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=dmsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3706740	3706796	.	-	.	ID=id7996;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=dmsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3706857	3706913	.	-	.	ID=id7997;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=dmsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3706860	3706895	.	-	.	ID=id7998;Note=PS00962 Ribosomal protein S2 signature 1.;gbkey=misc_feature;gene=dmsC;inference=protein motif:ProSite:PS00962
AL590842.1	EMBL	sequence_feature	3706950	3707015	.	-	.	ID=id7999;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=dmsC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3707062	3707679	.	-	.	ID=gene3271;Name=dmsB;gbkey=Gene;gene=dmsB;gene_biotype=protein_coding;locus_tag=YPO3324
AL590842.1	EMBL	CDS	3707062	3707679	.	-	0	ID=cds3224;Parent=gene3271;Dbxref=GOA:Q9X6B5,InterPro:IPR001450,InterPro:IPR014297,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:Q9X6B5,NCBI_GP:CAL21915.1;Name=CAL21915.1;Note=Similar to Escherichia coli anaerobic dimethyl sulfoxide reductase chain B DmsB SW:DMSB_ECOLI (P18776) (204 aa) fasta scores: E(): 0%2C 85.3%25 id in 204 aa%2C and identical to the previously sequenced Yersinia pestis dimethyl sulfoxide reductase subunit B DmsB TR:Q9X6B5 (EMBL:AF135170) (205 aa) fasta scores: E(): 0%2C 100.0%25 id in 205 aa. Similar to YPO2966 (63.5%25 identity in 203 aa overlap);gbkey=CDS;gene=dmsB;inference=similar to sequence:INSDC:AF135170;product=anaerobic dimethyl sulfoxide reductase chain B;protein_id=CAL21915.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3707335	3707406	.	-	.	ID=id8000;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 34.70%2C E-value 2.1e-06;gbkey=misc_feature;gene=dmsB;inference=protein motif:PF00037
AL590842.1	EMBL	sequence_feature	3707350	3707385	.	-	.	ID=id8001;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;gene=dmsB;inference=protein motif:ProSite:PS00198
AL590842.1	EMBL	sequence_feature	3707359	3707376	.	-	.	ID=id8002;Note=PS00190 Cytochrome c family heme-binding site signature.;gbkey=misc_feature;gene=dmsB;inference=protein motif:ProSite:PS00190
AL590842.1	EMBL	sequence_feature	3707587	3707661	.	-	.	ID=id8003;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 11.60%2C E-value 0.042;gbkey=misc_feature;gene=dmsB;inference=protein motif:PF00037
AL590842.1	EMBL	gene	3707691	3710141	.	-	.	ID=gene3272;Name=dmsA;gbkey=Gene;gene=dmsA;gene_biotype=protein_coding;locus_tag=YPO3325
AL590842.1	EMBL	CDS	3707691	3710141	.	-	0	ID=cds3225;Parent=gene3272;Dbxref=GOA:Q0WBW7,InterPro:IPR006311,InterPro:IPR006655,InterPro:IPR006656,InterPro:IPR006657,InterPro:IPR006963,InterPro:IPR009010,InterPro:IPR011888,InterPro:IPR027467,UniProtKB/TrEMBL:Q0WBW7,NCBI_GP:CAL21916.1;Name=CAL21916.1;Note=Similar to Escherichia coli anaerobic dimethyl sulfoxide reductase chain A precursor DmsA SW:DMSA_ECOLI (P18775) (785 aa) fasta scores: E(): 0%2C 81.6%25 id in 815 aa%2Cand identical to the previously sequenced Yersinia pestis dimethyl sulfoxide reductase subunit A DmsA TR:Q9X6B6 (EMBL:AF135170) (823 aa) fasta scores: E(): 0%2C 100.0%25 id in 816 aa. Similar to YPO2965 (50.5%25 identity in 823 aa overlap);gbkey=CDS;gene=dmsA;inference=similar to sequence:INSDC:AF135170;product=anaerobic dimethyl sulfoxide reductase chain A;protein_id=CAL21916.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3707712	3708053	.	-	.	ID=id8004;Note=Pfam match to entry PF01568 Molydop_binding%2CMolydopterin dinucleotide binding domain%2C score 152.50%2CE-value 7.5e-42;gbkey=misc_feature;gene=dmsA;inference=protein motif:PF01568
AL590842.1	EMBL	sequence_feature	3707862	3707945	.	-	.	ID=id8005;Note=PS00932 Prokaryotic molybdopterin oxidoreductases signature 3.;gbkey=misc_feature;gene=dmsA;inference=protein motif:ProSite:PS00932
AL590842.1	EMBL	sequence_feature	3708414	3708614	.	-	.	ID=id8006;Note=Pfam match to entry PF00384 molybdopterin%2CProkaryotic molybdopterin oxidoreductases%2C score 128.30%2CE-value 5.1e-41;gbkey=misc_feature;gene=dmsA;inference=protein motif:PF00384
AL590842.1	EMBL	sequence_feature	3708534	3708587	.	-	.	ID=id8007;Note=PS00490 Prokaryotic molybdopterin oxidoreductases signature 2.;gbkey=misc_feature;gene=dmsA;inference=protein motif:ProSite:PS00490
AL590842.1	EMBL	sequence_feature	3709899	3709955	.	-	.	ID=id8008;Note=PS00551 Prokaryotic molybdopterin oxidoreductases signature 1.;gbkey=misc_feature;gene=dmsA;inference=protein motif:ProSite:PS00551
AL590842.1	EMBL	gene	3710604	3711299	.	-	.	ID=gene3273;Name=araD;gbkey=Gene;gene=araD;gene_biotype=protein_coding;locus_tag=YPO3326
AL590842.1	EMBL	CDS	3710604	3711299	.	-	0	ID=cds3226;Parent=gene3273;Dbxref=GOA:Q0WBW6,InterPro:IPR001303,InterPro:IPR004661,UniProtKB/TrEMBL:Q0WBW6,NCBI_GP:CAL21917.1;Name=CAL21917.1;Note=Similar to Escherichia coli L-ribulose-5-phosphate 4-epimerase AraD SW:ARAD_ECOLI (P08203) (231 aa) fasta scores: E(): 0%2C 73.6%25 id in 231 aa%2C and identical to the previously sequenced Yersinia pestis L-ribulose-phosphate 4-epimerase AraD TR:Q9X6B7 (EMBL:AF135170) (256 aa) fasta scores: E(): 0%2C 100.0%25 id in 231 aa. Similar to YPO2230 (69.9%25 identity in 249 aa overlap);gbkey=CDS;gene=araD;inference=similar to sequence:INSDC:AF135170;product=L-ribulose-5-phosphate 4-epimerase;protein_id=CAL21917.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3710616	3711293	.	-	.	ID=id8009;Note=Pfam match to entry PF00596 Aldolase_II%2C Class II Aldolase and Adducin N-terminal domain.%2C score 391.40%2CE-value 9e-114;gbkey=misc_feature;gene=araD;inference=protein motif:PF00596
AL590842.1	EMBL	gene	3712002	3712811	.	+	.	ID=gene3274;Name=fucR;gbkey=Gene;gene=fucR;gene_biotype=protein_coding;locus_tag=YPO3327
AL590842.1	EMBL	CDS	3712002	3712811	.	+	0	ID=cds3227;Parent=gene3274;Dbxref=GOA:Q7CKA8,InterPro:IPR001034,InterPro:IPR014036,InterPro:IPR018356,UniProtKB/TrEMBL:Q7CKA8,NCBI_GP:CAL21918.1;Name=CAL21918.1;Note=Similar to Escherichia coli L-fucose operon activator FucR SW:FUCR_ECOLI (P11554) (243 aa) fasta scores: E(): 5.2e-20%2C 35.6%25 id in 247 aa%2C and to Bacillus halodurans transcriptional regulator BH1553 TR:Q9KCL8 (EMBL:AP001512) (251 aa) fasta scores: E(): 6e-22%2C 36.0%25 id in 264 aa;gbkey=CDS;gene=fucR;inference=similar to sequence:INSDC:AP001512;product=putative deoR-family regulatory protein;protein_id=CAL21918.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3712017	3712184	.	+	.	ID=id8010;Note=Pfam match to entry PF00455 deoR%2C Bacterial regulatory proteins%2C deoR family%2C score 53.50%2C E-value 4.7e-14;gbkey=misc_feature;gene=fucR;inference=protein motif:PF00455
AL590842.1	EMBL	sequence_feature	3712017	3712121	.	+	.	ID=id8011;Note=PS00894 Bacterial regulatory proteins%2C deoR family signature.;gbkey=misc_feature;gene=fucR;inference=protein motif:ProSite:PS00894
AL590842.1	EMBL	sequence_feature	3712251	3712745	.	+	.	ID=id8012;Note=Pfam match to entry PF00455 deoR%2C Bacterial regulatory proteins%2C deoR family%2C score 177.40%2C E-value 2.3e-49;gbkey=misc_feature;gene=fucR;inference=protein motif:PF00455
AL590842.1	EMBL	sequence_feature	3712536	3712568	.	+	.	ID=id8013;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=fucR;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	3712873	3713976	.	+	.	ID=gene3275;Name=YPO3328;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3328
AL590842.1	EMBL	CDS	3712873	3713976	.	+	0	ID=cds3228;Parent=gene3275;Dbxref=InterPro:IPR025997,InterPro:IPR028082,UniProtKB/TrEMBL:Q7CKA9,NCBI_GP:CAL21919.1;Name=CAL21919.1;Note=Similar to Escherichia coli from bases 1598243 to 1608845 TR:P76142 (EMBL:AE000249) (340 aa) fasta scores: E(): 1.7e-12%2C 27.1%25 id in 306 aa%2C and to Streptomyces coelicolor putative secreted solute-binding lipoprotein Scf43.19C TR:Q9RD69 (EMBL:AL136502) (360 aa) fasta scores: E(): 1.6e-13%2C 26.3%25 id in 319 aa%2C and to Thermotoga maritima sugar ABC transporter%2C periplasmic sugar-binding protein Tm0114 TR:Q9WXW9 (EMBL:AE001697) (335 aa) fasta scores: E(): 2.9e-10%2C 25.4%25 id in 351 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL136502;product=putative sugar ABC transporter%2C periplasmic protein;protein_id=CAL21919.1;transl_table=11
AL590842.1	EMBL	repeat_region	3714082	3714793	.	+	.	ID=id8014;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	3714227	3714685	.	+	.	ID=gene3276;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO3329
AL590842.1	EMBL	CDS	3714227	3714685	.	+	0	ID=cds3229;Parent=gene3276;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL21920.1;Name=CAL21920.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL21920.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3714281	3714592	.	+	.	ID=id8015;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	3714836	3716350	.	+	.	ID=gene3277;Name=YPO3330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3330
AL590842.1	EMBL	CDS	3714836	3716350	.	+	0	ID=cds3230;Parent=gene3277;Dbxref=GOA:Q74XP4,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q74XP4,NCBI_GP:CAL21921.1;Name=CAL21921.1;Note=Similar to Escherichia coli D-xylose transport ATP-binding protein XylG SW:XYLG_ECOLI (P37388) (513 aa) fasta scores: E(): 0%2C 39.5%25 id in 499 aa%2C and to Bacillus halodurans ribose ABC transporter RbsA TR:Q9K6J9 (EMBL:AP001519) (499 aa) fasta scores: E(): 0%2C 38.8%25 id in 495 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001519;product=putative sugar ABC transporter%2C ATP-binding protein;protein_id=CAL21921.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3714950	3715516	.	+	.	ID=id8016;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 165.00%2C E-value 1.2e-45;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	3714971	3714994	.	+	.	ID=id8017;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3715700	3716281	.	+	.	ID=id8018;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 99.80%2C E-value 5.2e-26;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	3716054	3716098	.	+	.	ID=id8019;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	3716343	3717332	.	+	.	ID=gene3278;Name=YPO3331;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3331
AL590842.1	EMBL	CDS	3716343	3717332	.	+	0	ID=cds3231;Parent=gene3278;Dbxref=GOA:Q7CKB1,InterPro:IPR001851,UniProtKB/TrEMBL:Q7CKB1,NCBI_GP:CAL21922.1;Name=CAL21922.1;Note=Similar to Escherichia coli ribose transport system permease protein RbsC SW:RBSC_ECOLI (P04984) (321 aa) fasta scores: E(): 2.2e-30%2C 34.2%25 id in 301 aa%2C and to Bacillus subtilis membrane transport protein RbsC TR:P96731 (EMBL:Z92953) (322 aa) fasta scores: E(): 7.9e-33%2C 35.4%25 id in 302 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z92953;product=putative sugar ABC transporter%2C permease protein;protein_id=CAL21922.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3716385	3716438	.	+	.	ID=id8020;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3716496	3716564	.	+	.	ID=id8021;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3716607	3716675	.	+	.	ID=id8022;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3716694	3716762	.	+	.	ID=id8023;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3716844	3716912	.	+	.	ID=id8024;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3716991	3717059	.	+	.	ID=id8025;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3717141	3717200	.	+	.	ID=id8026;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3717219	3717287	.	+	.	ID=id8027;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3717345	3718382	.	+	.	ID=gene3279;Name=YPO3332;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3332
AL590842.1	EMBL	CDS	3717345	3718382	.	+	0	ID=cds3232;Parent=gene3279;Dbxref=GOA:Q7CKB2,InterPro:IPR001851,UniProtKB/TrEMBL:Q7CKB2,NCBI_GP:CAL21923.1;Name=CAL21923.1;Note=Similar to Bacillus subtilis ribose transport system permease protein RbsC SW:RBSC_BACSU (P36948) (323 aa) fasta scores: E(): 5.3e-25%2C 31.6%25 id in 320 aa%2C and to Vibrio cholerae ribose ABC transporter%2C permease protein Vca0129 TR:Q9KN36 (EMBL:AE004354) (332 aa) fasta scores: E(): 1.4e-21%2C 29.8%25 id in 305 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004354;product=putative sugar ABC transporter%2C permease protein;protein_id=CAL21923.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3717381	3717449	.	+	.	ID=id8028;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3717477	3717545	.	+	.	ID=id8029;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3717549	3717617	.	+	.	ID=id8030;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3717645	3717713	.	+	.	ID=id8031;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3717726	3717794	.	+	.	ID=id8032;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3717852	3717920	.	+	.	ID=id8033;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3717921	3717944	.	+	.	ID=id8034;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3718008	3718076	.	+	.	ID=id8035;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3718104	3718163	.	+	.	ID=id8036;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3718182	3718241	.	+	.	ID=id8037;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3718254	3718307	.	+	.	ID=id8038;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3718588	3719469	.	+	.	ID=gene3280;Name=sgbU;gbkey=Gene;gene=sgbU;gene_biotype=protein_coding;locus_tag=YPO3333
AL590842.1	EMBL	CDS	3718588	3719469	.	+	0	ID=cds3233;Parent=gene3280;Dbxref=GOA:Q7CKB3,InterPro:IPR004560,InterPro:IPR013022,UniProtKB/TrEMBL:Q7CKB3,NCBI_GP:CAL21924.1;Name=CAL21924.1;Note=Similar to Escherichia coli putative hexulose-6-phosphate isomerase SgbU SW:SGBU_ECOLI (P37679) (286 aa) fasta scores: E(): 0%2C 71.5%25 id in 284 aa%2C and to Haemophilus influenzae putative hexulose-6-phosphate isomerase SgbU or Hi1026 SW:SGBU_HAEIN (P44990) (286 aa) fasta scores: E(): 0%2C 63.3%25 id in 283 aa;gbkey=CDS;gene=sgbU;product=putative hexulose-6-phosphate isomerase;protein_id=CAL21924.1;transl_table=11
AL590842.1	EMBL	gene	3719480	3720976	.	+	.	ID=gene3281;Name=lyx;gbkey=Gene;gene=lyx;gene_biotype=protein_coding;gene_synonym=lyxK,sgbK,xylK;locus_tag=YPO3334
AL590842.1	EMBL	CDS	3719480	3720976	.	+	0	ID=cds3234;Parent=gene3281;Dbxref=GOA:Q7CKB4,InterPro:IPR018484,InterPro:IPR018485,UniProtKB/TrEMBL:Q7CKB4,NCBI_GP:CAL21925.1;Name=CAL21925.1;Note=Similar to Escherichia coli cryptic L-xylulose kinase Lyx or LyxK or XylK or SgbK SW:LYXK_ECOLI (P37677) (498 aa) fasta scores: E(): 0%2C 42.8%25 id in 495 aa%2C and to Haemophilus influenzae probable L-xylulose kinase Lyx or LyxK or SgbK or Hi1027 SW:LYXK_HAEIN (P44991) (485 aa) fasta scores: E(): 0%2C 39.5%25 id in 499 aa;gbkey=CDS;gene=lyx;product=putative L-xylulose kinase;protein_id=CAL21925.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3719738	3720808	.	+	.	ID=id8039;Note=Pfam match to entry PF00370 FGGY%2C FGGY family of carbohydrate kinases%2C score 296.50%2C E-value 3.2e-85;gbkey=misc_feature;gene=lyx;inference=protein motif:PF00370
AL590842.1	EMBL	sequence_feature	3720563	3720625	.	+	.	ID=id8040;Note=PS00445 FGGY family of carbohydrate kinases signature 2.;gbkey=misc_feature;gene=lyx;inference=protein motif:ProSite:PS00445
AL590842.1	EMBL	gene	3721374	3723017	.	+	.	ID=gene3282;Name=fumA;gbkey=Gene;gene=fumA;gene_biotype=protein_coding;gene_synonym=fumB;locus_tag=YPO3335
AL590842.1	EMBL	CDS	3721374	3723017	.	+	0	ID=cds3235;Parent=gene3282;Dbxref=GOA:Q7CKB5,InterPro:IPR004646,InterPro:IPR004647,InterPro:IPR011167,InterPro:IPR020557,UniProtKB/TrEMBL:Q7CKB5,NCBI_GP:CAL21926.1;Name=CAL21926.1;Note=Similar to class I fumarate hydratases%2C e.g. Escherichia coli fumarate hydratase class I%2C aerobic FumA SW:FUMA_ECOLI (P00923) (547 aa) fasta scores: E(): 0%2C 86.4%25 id in 545 aa%2C and to Escherichia coli fumarate hydratase class I%2C anaerobic FumB SW:FUMB_ECOLI (P14407) (548 aa) fasta scores: E(): 0%2C 85.7%25 id in 546 aa;gbkey=CDS;gene=fumA;product=fumarate hydratase%2C class I;protein_id=CAL21926.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3721416	3722864	.	+	.	ID=id8041;Note=Pfam match to entry PF00206 lyase_1%2C Lyase%2C score 308.30%2C E-value 8.9e-89;gbkey=misc_feature;gene=fumA;inference=protein motif:PF00206
AL590842.1	EMBL	sequence_feature	3722295	3722327	.	+	.	ID=id8042;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=fumA;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	3722739	3722768	.	+	.	ID=id8043;Note=PS00163 Fumarate lyases signature.;gbkey=misc_feature;gene=fumA;inference=protein motif:ProSite:PS00163
AL590842.1	EMBL	gene	3723146	3723451	.	+	.	ID=gene3283;Name=YPO3336;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3336
AL590842.1	EMBL	CDS	3723146	3723451	.	+	0	ID=cds3236;Parent=gene3283;Dbxref=InterPro:IPR021831,UniProtKB/TrEMBL:Q7CKB6,NCBI_GP:CAL21927.1;Name=CAL21927.1;Note=Similar to Escherichia coli hypothetical protein YfbH SW:YBFH_ECOLI () (105 aa) fasta scores: E(): 0.74%2C23.8%25 id in 105 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21927.1;transl_table=11
AL590842.1	EMBL	gene	3723448	3724233	.	+	.	ID=gene3284;Name=map;gbkey=Gene;gene=map;gene_biotype=protein_coding;locus_tag=YPO3337
AL590842.1	EMBL	CDS	3723448	3724233	.	+	0	ID=cds3237;Parent=gene3284;Dbxref=GOA:Q7CKB7,InterPro:IPR000994,InterPro:IPR001714,InterPro:IPR002467,UniProtKB/TrEMBL:Q7CKB7,NCBI_GP:CAL21928.1;Name=CAL21928.1;Note=Similar to Escherichia coli methionine aminopeptidase Map SW:AMPM_ECOLI (P07906) (264 aa) fasta scores: E(): 0%2C 57.9%25 id in 247 aa%2C and to Xylella fastidiosa methionine aminopeptidase Xf0111 TR:Q9PH35 (EMBL:AE003865) (259 aa) fasta scores: E(): 0%2C 62.6%25 id in 257 aa. Similar to YPO1043 (54.3%25 identity in 247 aa overlap;gbkey=CDS;gene=map;inference=similar to sequence:INSDC:AE003865;product=methionine aminopeptidase;protein_id=CAL21928.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3723460	3724185	.	+	.	ID=id8044;Note=Pfam match to entry PF00557 Peptidase_M24%2Cmetallopeptidase family M24%2C score 263.20%2C E-value 3.4e-75;gbkey=misc_feature;gene=map;inference=protein motif:PF00557
AL590842.1	EMBL	sequence_feature	3723949	3724005	.	+	.	ID=id8045;Note=PS00680 Methionine aminopeptidase subfamily 1 signature.;gbkey=misc_feature;gene=map;inference=protein motif:ProSite:PS00680
AL590842.1	EMBL	gene	3724591	3725778	.	-	.	ID=gene3285;Name=YPO3339;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3339
AL590842.1	EMBL	CDS	3724591	3725778	.	-	0	ID=cds3238;Parent=gene3285;Dbxref=InterPro:IPR012927,UniProtKB/TrEMBL:Q7CKB8,NCBI_GP:CAL21929.1;Name=CAL21929.1;Note=Weakly similar to Escherichia coli ankyrin-repeat protein A ArpA or Arp SW:ARPA_ECOLI (P23325) (728 aa) fasta scores: E(): 5.3e-10%2C 24.9%25 id in 369 aa%2C and to Shigella flexneri enterotoxin SenA TR:Q47635 (EMBL:Z54211) (565 aa) fasta scores: E(): 1.6e-09%2C 27.2%25 id in 357 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z54211;product=hypothetical protein;protein_id=CAL21929.1;transl_table=11
AL590842.1	EMBL	pseudogene	3726211	3728307	.	-	.	ID=gene3286;Name=YPO3340;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO3340;pseudo=true
AL590842.1	EMBL	CDS	3726211	3728307	.	-	0	ID=cds3239;Parent=gene3286;Note=Similar to Escherichia coli exogenous ferric siderophore receptor R4 TR:O87518 (EMBL:AF081285) (669 aa) fasta scores: E(): 0%2C 56.4%25 id in 674 aa%2C and to Escherichia coli O157:H7 adhesin Iha TR:Q9LAP1 (EMBL:AF126104) (696 aa) fasta scores: E(): 0%2C 56.4%25 id in 674 aa. This CDS contains a stop codon at position 528. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=similar to sequence:INSDC:AF126104;product=putative exogenous ferric siderophore receptor (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	3726214	3726618	.	-	.	ID=id8046;Note=Pfam match to entry PF00593 TonB_boxC%2C TonB dependent receptor C-terminal region%2C score 72.00%2C E-value 1.2e-18;gbkey=misc_feature;inference=protein motif:PF00593
AL590842.1	EMBL	sequence_feature	3727903	3727932	.	-	.	ID=id8047;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00339
AL590842.1	EMBL	gene	3728968	3730347	.	+	.	ID=gene3287;Name=yhjA;gbkey=Gene;gene=yhjA;gene_biotype=protein_coding;locus_tag=YPO3342
AL590842.1	EMBL	CDS	3728968	3730347	.	+	0	ID=cds3240;Parent=gene3287;Dbxref=GOA:Q7CKB9,InterPro:IPR003088,InterPro:IPR004852,InterPro:IPR009056,InterPro:IPR011031,InterPro:IPR025992,UniProtKB/TrEMBL:Q7CKB9,NCBI_GP:CAL21931.1;Name=CAL21931.1;Note=Similar to Escherichia coli probable cytochrome C peroxidase YhjA SW:YHJA_ECOLI (P37197) (465 aa) fasta scores: E(): 0%2C 55.7%25 id in 458 aa%2C and to Haemophilus ducreyi cytochrome C peroxidase TR:Q9RF96 (EMBL:AF200362) (461 aa) fasta scores: E(): 0%2C 51.9%25 id in 449 aa;gbkey=CDS;gene=yhjA;inference=similar to sequence:INSDC:AF200362;product=putative cytochrome C peroxidase;protein_id=CAL21931.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3728980	3729048	.	+	.	ID=id8048;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=yhjA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3729130	3729147	.	+	.	ID=id8049;Note=PS00190 Cytochrome c family heme-binding site signature.;gbkey=misc_feature;gene=yhjA;inference=protein motif:ProSite:PS00190
AL590842.1	EMBL	sequence_feature	3729571	3729588	.	+	.	ID=id8050;Note=PS00190 Cytochrome c family heme-binding site signature.;gbkey=misc_feature;gene=yhjA;inference=protein motif:ProSite:PS00190
AL590842.1	EMBL	sequence_feature	3730003	3730020	.	+	.	ID=id8051;Note=PS00190 Cytochrome c family heme-binding site signature.;gbkey=misc_feature;gene=yhjA;inference=protein motif:ProSite:PS00190
AL590842.1	EMBL	gene	3730412	3731182	.	+	.	ID=gene3288;Name=YPO3343;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3343
AL590842.1	EMBL	CDS	3730412	3731182	.	+	0	ID=cds3241;Parent=gene3288;Dbxref=GOA:Q7CKC0,InterPro:IPR001638,UniProtKB/TrEMBL:Q7CKC0,NCBI_GP:CAL21932.1;Name=CAL21932.1;Note=Similar to Pseudomonas aeruginosa cyclohexadienyl dehydratase precursor [includes: prephenate dehydratase and arogenate dehydratase] PheC or Pa3475 SW:PHEC_PSEAE (Q01269) (268 aa) fasta scores: E(): 7.6e-27%2C 37.1%25 id in 251 aa%2C and to Vibrio cholerae amino acid ABC transporter%2Cperiplasmic amino acid-binding protein Vca1039 TR:Q9KKR3 (EMBL:AE004429) (278 aa) fasta scores: E(): 6.5e-14%2C 25.7%25 id in 245 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004429;product=probable extracellular solute-binding protein;protein_id=CAL21932.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3730418	3731170	.	+	.	ID=id8052;Note=Pfam match to entry PF00497 SBP_bac_3%2C Bacterial extracellular solute-binding proteins%2C family 3%2C score 140.50%2C E-value 3e-38;gbkey=misc_feature;inference=protein motif:PF00497
AL590842.1	EMBL	gene	3731603	3731809	.	+	.	ID=gene3289;Name=YPO3344;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3344
AL590842.1	EMBL	CDS	3731603	3731809	.	+	0	ID=cds3242;Parent=gene3289;Dbxref=UniProtKB/TrEMBL:Q7CKC1,NCBI_GP:CAL21933.1;Name=CAL21933.1;Note=no significant database hits to the full length CDS. Weakly similar to the C-terminal regions of Dictyostelium discoideum hypothetical 29.9 kDa protein TR:Q9NAX7 (EMBL:AF279134) (268 aa) fasta scores: E(): 2.1%2C 35.8%25 id in 53 aa%2C and of Homo sapiens proline-rich protein PrcC or TprC SW:PRCC_HUMAN (Q92733) (491 aa) fasta scores: E(): 8.4%2C 31.1%25 id in 45 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF279134;product=hypothetical protein;protein_id=CAL21933.1;transl_table=11
AL590842.1	EMBL	gene	3732005	3732283	.	+	.	ID=gene3290;Name=YPO3345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3345
AL590842.1	EMBL	CDS	3732005	3732283	.	+	0	ID=cds3243;Parent=gene3290;Dbxref=GOA:Q74XQ9,InterPro:IPR006793,InterPro:IPR011991,UniProtKB/TrEMBL:Q74XQ9,NCBI_GP:CAL21934.1;Name=CAL21934.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21934.1;transl_table=11
AL590842.1	EMBL	gene	3732530	3732871	.	+	.	ID=gene3291;Name=arsR;gbkey=Gene;gene=arsR;gene_biotype=protein_coding;locus_tag=YPO3346
AL590842.1	EMBL	CDS	3732530	3732871	.	+	0	ID=cds3244;Parent=gene3291;Dbxref=GOA:Q7CKC2,InterPro:IPR001845,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CKC2,NCBI_GP:CAL21935.1;Name=CAL21935.1;Note=Similar to Escherichia coli arsenical resistance operon repressor ArsR SW:ARR1_ECOLI (P15905) (117 aa) fasta scores: E(): 2.4e-32%2C 67.2%25 id in 116 aa%2C and to Klebsiella oxytoca ArsR TR:Q9KJI5 (EMBL:AF168737) (116 aa) fasta scores: E(): 3.9e-28%2C 63.7%25 id in 113 aa;gbkey=CDS;gene=arsR;inference=similar to sequence:INSDC:AF168737;product=arsenical resistance operon repressor;protein_id=CAL21935.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3732557	3732790	.	+	.	ID=id8053;Note=Pfam match to entry PF01022 HTH_5%2C Bacterial regulatory protein%2C arsR family%2C score 96.50%2C E-value 5.3e-25;gbkey=misc_feature;gene=arsR;inference=protein motif:PF01022
AL590842.1	EMBL	sequence_feature	3732620	3732685	.	+	.	ID=id8054;Note=Predicted helix-turn-helix motif with score 1009 (+2.62 SD) at aa 31-52%2C sequence LCVCELCHRLNEAQPKISRHLA;gbkey=misc_feature;gene=arsR
AL590842.1	EMBL	sequence_feature	3732629	3732646	.	+	.	ID=id8055;Note=PS00190 Cytochrome c family heme-binding site signature.;gbkey=misc_feature;gene=arsR;inference=protein motif:ProSite:PS00190
AL590842.1	EMBL	gene	3732956	3734245	.	+	.	ID=gene3292;Name=arsB;gbkey=Gene;gene=arsB;gene_biotype=protein_coding;gene_synonym=arsF;locus_tag=YPO3347
AL590842.1	EMBL	CDS	3732956	3734245	.	+	0	ID=cds3245;Parent=gene3292;Dbxref=GOA:Q7CKC3,InterPro:IPR000802,UniProtKB/TrEMBL:Q7CKC3,NCBI_GP:CAL21936.1;Name=CAL21936.1;Note=Similar to Escherichia coli arsenical pump membrane protein ArsB or ArsF SW:ARSB_ECOLI (P37310) (429 aa) fasta scores: E(): 0%2C 83.7%25 id in 429 aa%2C and to Serratia marcescens ArsB transmembrane efflux channel ArsB TR:Q9L336 (EMBL:AJ288983) (429 aa) fasta scores: E(): 0%2C 87.9%25 id in 429 aa;gbkey=CDS;gene=arsB;inference=similar to sequence:INSDC:AJ288983;product=arsenical pump membrane protein;protein_id=CAL21936.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3732962	3734230	.	+	.	ID=id8056;Note=Pfam match to entry PF02040 ArsB%2C Arsenical pump membrane protein%2C score 1045.60%2C E-value 0;gbkey=misc_feature;gene=arsB;inference=protein motif:PF02040
AL590842.1	EMBL	sequence_feature	3733016	3733084	.	+	.	ID=id8057;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=arsB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3733097	3733165	.	+	.	ID=id8058;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=arsB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3733226	3733285	.	+	.	ID=id8059;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=arsB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3733295	3733348	.	+	.	ID=id8060;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=arsB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3733367	3733435	.	+	.	ID=id8061;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=arsB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3733478	3733546	.	+	.	ID=id8062;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=arsB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3733637	3733741	.	+	.	ID=id8063;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=arsB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3733784	3733843	.	+	.	ID=id8064;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=arsB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3733901	3733960	.	+	.	ID=id8065;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=arsB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3734051	3734119	.	+	.	ID=id8066;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=arsB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3734156	3734224	.	+	.	ID=id8067;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=arsB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3734812	3735771	.	+	.	ID=gene3293;Name=YPO3348;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3348
AL590842.1	EMBL	CDS	3734812	3735771	.	+	0	ID=cds3246;Parent=gene3293;Dbxref=GOA:Q74XR2,InterPro:IPR007324,InterPro:IPR011991,UniProtKB/TrEMBL:Q74XR2,NCBI_GP:CAL21937.1;Name=CAL21937.1;Note=Similar to Vibrio cholerae transcriptional regulator%2C SorC family VCA0621 TR:Q9KLX0 (EMBL:AE004392) (331 aa) fasta scores: E(): 0%2C 66.6%25 id in 311 aa%2C and to Bacillus halodurans transcriptional regulator BH0780 TR:Q9KER9 (EMBL:AP001509) (316 aa) fasta scores: E(): 5.2e-28%2C 31.5%25 id in 314 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001509;product=transcriptional regulatory protein;protein_id=CAL21937.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3734872	3734937	.	+	.	ID=id8068;Note=Predicted helix-turn-helix motif with score 1954 (+5.84 SD) at aa 21-42%2C sequence MTQEEIAHKFGISRIKVGRLLK;gbkey=misc_feature
AL590842.1	EMBL	gene	3735892	3736566	.	-	.	ID=gene3294;Name=YPO3349;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3349
AL590842.1	EMBL	CDS	3735892	3736566	.	-	0	ID=cds3247;Parent=gene3294;Dbxref=GOA:Q7CKC4,InterPro:IPR004007,InterPro:IPR012737,UniProtKB/TrEMBL:Q7CKC4,NCBI_GP:CAL21938.1;Name=CAL21938.1;Note=Similar to Escherichia coli protein YcgS SW:YCGS_ECOLI (P76014) (210 aa) fasta scores: E(): 5.3e-13%2C31.3%25 id in 182 aa%2C and to Bacillus halodurans BH3396 protein TR:Q9K7G5 (EMBL:AP001518) (196 aa) fasta scores: E(): 3.2e-10%2C 33.5%25 id in 203 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001518;product=conserved hypothetical protein;protein_id=CAL21938.1;transl_table=11
AL590842.1	EMBL	gene	3736573	3737574	.	-	.	ID=gene3295;Name=dhaK;gbkey=Gene;gene=dhaK;gene_biotype=protein_coding;gene_synonym=ycgT;locus_tag=YPO3350
AL590842.1	EMBL	CDS	3736573	3737574	.	-	0	ID=cds3248;Parent=gene3295;Dbxref=GOA:Q0WBU5,InterPro:IPR004006,UniProtKB/TrEMBL:Q0WBU5,NCBI_GP:CAL21939.1;Name=CAL21939.1;Note=Similar to Citrobacter freundii dihydroxyacetone kinase DhaK SW:DAK_CITFR (P45510) (552 aa) fasta scores: E(): 5.6e-28%2C 34.7%25 id in 320 aa%2C and to Bacillus halodurans dihydroxyacetone kinase Bh3397 TR:Q9K7G4 (EMBL:AP001518) (330 aa) fasta scores: E(): 0%2C 41.0%25 id in 315 aa%2C and to Escherichia coli hypothetical 39.5 kDa protein in treA-pth intergenic region YcgT SW:YCGT_ECOLI (P76015) (366 aa) fasta scores: E(): 1.4e-29%2C 37.7%25 id in 355 aa;gbkey=CDS;gene=dhaK;inference=similar to sequence:INSDC:AP001518;product=putative dihydroxyacetone kinase;protein_id=CAL21939.1;transl_table=11
AL590842.1	EMBL	gene	3737661	3738431	.	-	.	ID=gene3296;Name=YPO3351;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3351
AL590842.1	EMBL	CDS	3737661	3738431	.	-	0	ID=cds3249;Parent=gene3296;Dbxref=GOA:Q7CKC5,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:Q7CKC5,NCBI_GP:CAL21940.1;Name=CAL21940.1;Note=Similar to Escherichia coli 2-deoxy-D-gluconate 3-dehydrogenase KduD SW:KDUD_ECOLI (P37769) (253 aa) fasta scores: E(): 8.8e-26%2C 36.9%25 id in 255 aa%2C and to Archaeoglobus fulgidus 2-deoxy-D-gluconate 3-dehydrogenase af1207 TR:O29061 (EMBL:AE001021) (281 aa) fasta scores: E(): 1.1e-30%2C 41.2%25 id in 250 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE001021;product=putative dehydrogenase;protein_id=CAL21940.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3737685	3737777	.	-	.	ID=id8069;Note=Pfam match to entry PF00678 adh_short_C2%2C Short chain dehydrogenase/reductase C-terminus%2C score 43.10%2CE-value 1.5e-10;gbkey=misc_feature;inference=protein motif:PF00678
AL590842.1	EMBL	sequence_feature	3737838	3738383	.	-	.	ID=id8070;Note=Pfam match to entry PF00106 adh_short%2C short chain dehydrogenase%2C score 240.60%2C E-value 2.3e-68;gbkey=misc_feature;inference=protein motif:PF00106
AL590842.1	EMBL	sequence_feature	3737901	3737987	.	-	.	ID=id8071;Note=PS00061 Short-chain dehydrogenases/reductases family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00061
AL590842.1	EMBL	gene	3738495	3739610	.	-	.	ID=gene3297;Name=ydjJ;gbkey=Gene;gene=ydjJ;gene_biotype=protein_coding;locus_tag=YPO3352
AL590842.1	EMBL	CDS	3738495	3739610	.	-	0	ID=cds3250;Parent=gene3297;Dbxref=GOA:Q0WBU3,InterPro:IPR002085,InterPro:IPR002328,InterPro:IPR011032,InterPro:IPR013149,InterPro:IPR013154,InterPro:IPR016040,UniProtKB/TrEMBL:Q0WBU3,NCBI_GP:CAL21941.1;Name=CAL21941.1;Note=Similar to Pseudomonas putida 2%2C3-butanediol dehydrogenase Adh TR:Q59696 (EMBL:L35343) (362 aa) fasta scores: E(): 0%2C 35.5%25 id in 358 aa%2C and to Escherichia coli hypothetical zinc-type alcohol dehydrogenase-like protein in ansA-gapA intergenic region YdjJ SW:YDJJ_ECOLI (P77280) (347 aa) fasta scores: E(): 5.8e-30%2C 30.7%25 id in 348 aa. Similar to YPO2502 (52.6%25 identity in 361 aa overlap);gbkey=CDS;gene=ydjJ;inference=similar to sequence:INSDC:L35343;product=putative Zinc-binding dehydrogenase;protein_id=CAL21941.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3738507	3739526	.	-	.	ID=id8072;Note=Pfam match to entry PF00107 adh_zinc%2C Zinc-binding dehydrogenases%2C score 244.10%2C E-value 1.9e-69;gbkey=misc_feature;gene=ydjJ;inference=protein motif:PF00107
AL590842.1	EMBL	sequence_feature	3739314	3739358	.	-	.	ID=id8073;Note=PS00059 Zinc-containing alcohol dehydrogenases signature.;gbkey=misc_feature;gene=ydjJ;inference=protein motif:ProSite:PS00059
AL590842.1	EMBL	gene	3740093	3740548	.	+	.	ID=gene3298;Name=rpiB;gbkey=Gene;gene=rpiB;gene_biotype=protein_coding;locus_tag=YPO3353
AL590842.1	EMBL	CDS	3740093	3740548	.	+	0	ID=cds3251;Parent=gene3298;Dbxref=GOA:Q7CKC6,InterPro:IPR003500,InterPro:IPR004785,UniProtKB/TrEMBL:Q7CKC6,NCBI_GP:CAL21942.1;Name=CAL21942.1;Note=Similar to Escherichia coli ribose 5-phosphate isomerase B RpiB SW:RPIB_ECOLI (P37351) (149 aa) fasta scores: E(): 1.7e-22%2C 44.2%25 id in 147 aa%2C and to Bacillus halodurans ribose 5-phosphate epimerase Bh3767 TR:Q9K6G2 (EMBL:AP001519) (145 aa) fasta scores: E(): 7.3e-24%2C 44.1%25 id in 145 aa;gbkey=CDS;gene=rpiB;inference=similar to sequence:INSDC:AP001519;product=ribose 5-phosphate isomerase B;protein_id=CAL21942.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3740279	3740521	.	+	.	ID=id8074;Note=Pfam match to entry PF02502 LacAB_rpiB%2C %2C score 148.30%2C E-value 1.4e-40;gbkey=misc_feature;gene=rpiB;inference=protein motif:PF02502
AL590842.1	EMBL	gene	3741342	3743897	.	+	.	ID=gene3299;Name=fdv;gbkey=Gene;gene=fdv;gene_biotype=protein_coding;gene_synonym=mutS;locus_tag=YPO3354
AL590842.1	EMBL	CDS	3741342	3743897	.	+	0	ID=cds3252;Parent=gene3299;Dbxref=GOA:Q8ZBQ3,InterPro:IPR000432,InterPro:IPR005748,InterPro:IPR007695,InterPro:IPR007696,InterPro:IPR007860,InterPro:IPR007861,InterPro:IPR016151,InterPro:IPR027417,NCBI_GP:CAL21943.1;Name=CAL21943.1;Note=Similar to Escherichia coli DNA mismatch repair protein MutS or Fdv SW:MUTS_ECOLI (P23909) (853 aa) fasta scores: E(): 0%2C 83.8%25 id in 853 aa%2C and to Salmonella typhimurium DNA mismatch repair protein MutS SW:MUTS_SALTY (P10339) (854 aa) fasta scores: E(): 0%2C 81.4%25 id in 853 aa;gbkey=CDS;gene=fdv;product=DNA mismatch repair protein MutS;protein_id=CAL21943.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3741378	3742760	.	+	.	ID=id8075;Note=Pfam match to entry PF01624 MutS_N%2C MutS family%2CN-terminal putative DNA binding domain%2C score 681.40%2CE-value 4.6e-201;gbkey=misc_feature;gene=fdv;inference=protein motif:PF01624
AL590842.1	EMBL	sequence_feature	3741762	3741785	.	+	.	ID=id8076;Note=PS00030 Eukaryotic putative RNA-binding region RNP-1 signature.;gbkey=misc_feature;gene=fdv;inference=protein motif:ProSite:PS00030
AL590842.1	EMBL	sequence_feature	3742986	3743708	.	+	.	ID=id8077;Note=Pfam match to entry PF00488 MutS_C%2C DNA mismatch repair proteins%2C mutS family%2C score 577.30%2C E-value 9.7e-170;gbkey=misc_feature;gene=fdv;inference=protein motif:PF00488
AL590842.1	EMBL	sequence_feature	3743181	3743204	.	+	.	ID=id8078;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=fdv;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3743403	3743453	.	+	.	ID=id8079;Note=PS00486 DNA mismatch repair proteins mutS family signature.;gbkey=misc_feature;gene=fdv;inference=protein motif:ProSite:PS00486
AL590842.1	EMBL	gene	3744225	3745223	.	-	.	ID=gene3300;Name=appR;gbkey=Gene;gene=appR;gene_biotype=protein_coding;gene_synonym=katF,nur,otsX,rpoS,sigS;locus_tag=YPO3355
AL590842.1	EMBL	CDS	3744225	3745223	.	-	0	ID=cds3253;Parent=gene3300;Dbxref=GOA:Q7CKC7,InterPro:IPR000943,InterPro:IPR007624,InterPro:IPR007627,InterPro:IPR007630,InterPro:IPR009042,InterPro:IPR011991,InterPro:IPR012761,InterPro:IPR013324,InterPro:IPR013325,InterPro:IPR014284,UniProtKB/TrEMBL:Q7CKC7,NCBI_GP:CAL21944.1;Name=CAL21944.1;Note=Similar to Yersinia enterocolitica RNA polymerase sigma factor RpoS SW:RPOS_YEREN (P47765) (331 aa) fasta scores: E(): 0%2C 97.3%25 id in 332 aa%2C and to Escherichia coli RNA polymerase sigma factor RpoS or KatF or AppR or SigS or OtsX or Nur SW:RPOS_ECOLI (P13445) (330 aa) fasta scores: E(): 0%2C 92.5%25 id in 332 aa;gbkey=CDS;gene=appR;product=RNA polymerase sigma factor RpoS;protein_id=CAL21944.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3744273	3744956	.	-	.	ID=id8080;Note=Pfam match to entry PF00140 sigma70%2C Sigma-70 factor%2C score 390.30%2C E-value 1.9e-113;gbkey=misc_feature;gene=appR;inference=protein motif:PF00140
AL590842.1	EMBL	sequence_feature	3744279	3744359	.	-	.	ID=id8081;Note=PS00716 Sigma-70 factors family signature 2.;gbkey=misc_feature;gene=appR;inference=protein motif:ProSite:PS00716
AL590842.1	EMBL	sequence_feature	3744297	3744362	.	-	.	ID=id8082;Note=Predicted helix-turn-helix motif with score 1306 (+3.64 SD) at aa 288-309%2C sequence ATLEDVGREIGLTRERVRQIQV;gbkey=misc_feature;gene=appR
AL590842.1	EMBL	sequence_feature	3744825	3744866	.	-	.	ID=id8083;Note=PS00715 Sigma-70 factors family signature 1.;gbkey=misc_feature;gene=appR;inference=protein motif:ProSite:PS00715
AL590842.1	EMBL	gene	3745278	3746279	.	-	.	ID=gene3301;Name=nlpD;gbkey=Gene;gene=nlpD;gene_biotype=protein_coding;locus_tag=YPO3356
AL590842.1	EMBL	CDS	3745278	3746279	.	-	0	ID=cds3254;Parent=gene3301;Dbxref=InterPro:IPR011055,InterPro:IPR016047,InterPro:IPR018392,UniProtKB/TrEMBL:Q7CKC8,NCBI_GP:CAL21945.1;Name=CAL21945.1;Note=Similar to Escherichia coli lipoprotein NlpD precursor SW:NLPD_ECOLI (P33648) (379 aa) fasta scores: E(): 0%2C 58.7%25 id in 387 aa%2C and to Salmonella dublin NlpD protein TR:CAA06881 (EMBL:AJ006131) (377 aa) fasta scores: E(): 0%2C 58.9%25 id in 387 aa. This CDS lacks four repeat consensus sequence%2C QQPQIQPV%2C present in E. coli;gbkey=CDS;gene=nlpD;inference=similar to sequence:INSDC:AJ006131;product=lipoprotein;protein_id=CAL21945.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3745293	3745541	.	-	.	ID=id8084;Note=Pfam match to entry PF01551 Peptidase_M37%2C Peptidase family M23/M37%2C score 155.70%2C E-value 8e-43;gbkey=misc_feature;gene=nlpD;inference=protein motif:PF01551
AL590842.1	EMBL	sequence_feature	3745914	3746045	.	-	.	ID=id8085;Note=Pfam match to entry PF01476 LysM%2C Putative peptidoglycan binding domain%2C score 47.30%2C E-value 3.5e-10;gbkey=misc_feature;gene=nlpD;inference=protein motif:PF01476
AL590842.1	EMBL	sequence_feature	3746202	3746234	.	-	.	ID=id8086;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=nlpD;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	3746383	3747009	.	-	.	ID=gene3302;Name=pcm;gbkey=Gene;gene=pcm;gene_biotype=protein_coding;locus_tag=YPO3357
AL590842.1	EMBL	CDS	3746383	3747009	.	-	0	ID=cds3255;Parent=gene3302;Dbxref=GOA:Q8ZBQ0,InterPro:IPR000682,InterPro:IPR029063,NCBI_GP:CAL21946.1;Name=CAL21946.1;Note=Similar to Escherichia coli protein-L-isoaspartate O-methyltransferase Pcm SW:PIMT_ECOLI (P24206) (207 aa) fasta scores: E(): 0%2C 80.2%25 id in 207 aa%2C and to Vibrio cholerae protein-L-isoaspartate O-methyltransferase Vc0532 TR:Q9KUI8 (EMBL:AE004139) (208 aa) fasta scores: E(): 0%2C63.5%25 id in 208 aa;gbkey=CDS;gene=pcm;inference=similar to sequence:INSDC:AE004139;product=protein-L-isoaspartate O-methyltransferase;protein_id=CAL21946.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3746389	3747000	.	-	.	ID=id8087;Note=Pfam match to entry PF01135 PCMT%2CProtein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)%2C score 372.30%2C E-value 4.9e-108;gbkey=misc_feature;gene=pcm;inference=protein motif:PF01135
AL590842.1	EMBL	sequence_feature	3746683	3746712	.	-	.	ID=id8088;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.;gbkey=misc_feature;gene=pcm;inference=protein motif:ProSite:PS00339
AL590842.1	EMBL	gene	3747003	3747767	.	-	.	ID=gene3303;Name=surE;gbkey=Gene;gene=surE;gene_biotype=protein_coding;locus_tag=YPO3358
AL590842.1	EMBL	CDS	3747003	3747767	.	-	0	ID=cds3256;Parent=gene3303;Dbxref=GOA:Q8ZBP9,InterPro:IPR002828,NCBI_GP:CAL21947.1;Name=CAL21947.1;Note=Similar to Escherichia coli stationary-phase survival protein SurE SW:SURE_ECOLI (P36664) (253 aa) fasta scores: E(): 0%2C 80.2%25 id in 253 aa%2C and to Vibrio cholerae survival protein SurE TR:Q9KUI9 (EMBL:AE004139) (263 aa) fasta scores: E(): 0%2C 55.2%25 id in 252 aa;gbkey=CDS;gene=surE;inference=similar to sequence:INSDC:AE004139;product=stationary-phase survival protein;protein_id=CAL21947.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3747210	3747752	.	-	.	ID=id8089;Note=Pfam match to entry PF01975 SurE%2C Survival protein SurE%2C score 321.90%2C E-value 7.5e-93;gbkey=misc_feature;gene=surE;inference=protein motif:PF01975
AL590842.1	EMBL	gene	3747745	3748794	.	-	.	ID=gene3304;Name=YPO3359;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3359
AL590842.1	EMBL	CDS	3747745	3748794	.	-	0	ID=cds3257;Parent=gene3304;Dbxref=GOA:Q8ZBP8,InterPro:IPR001656,InterPro:IPR011760,InterPro:IPR020103,InterPro:IPR020119,NCBI_GP:CAL21948.1;Name=CAL21948.1;Note=Similar to Escherichia coli hypothetical protein YgbO SW:YGBO_ECOLI (Q57261) (349 aa) fasta scores: E(): 0%2C66.6%25 id in 338 aa%2C and to Haemophilus influenzae hypothetical protein HI0701 SW:YGBO_HAEIN (P44039) (339 aa) fasta scores: E(): 0%2C 45.6%25 id in 340 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21948.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3747769	3748791	.	-	.	ID=id8090;Note=Pfam match to entry PF01142 UPF0024%2C Uncharacterized protein family UPF0024%2C score 353.20%2C E-value 2.8e-102;gbkey=misc_feature;inference=protein motif:PF01142
AL590842.1	EMBL	sequence_feature	3748528	3748569	.	-	.	ID=id8091;Note=PS01268 Uncharacterized protein family UPF0024 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01268
AL590842.1	EMBL	gene	3748805	3749293	.	-	.	ID=gene3305;Name=b2746;gbkey=Gene;gene=b2746;gene_biotype=protein_coding;gene_synonym=ispF,mecS;locus_tag=YPO3360
AL590842.1	EMBL	CDS	3748805	3749293	.	-	0	ID=cds3258;Parent=gene3305;Dbxref=GOA:Q8ZBP7,InterPro:IPR003526,InterPro:IPR020555,PDB:3F6M,PDB:3FPI,NCBI_GP:CAL21949.1;Name=CAL21949.1;Note=Similar to Escherichia coli 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase IspF or B2746 SW:ISPF_ECOLI (P36663) (159 aa) fasta scores: E(): 0%2C 85.1%25 id in 161 aa%2Cand to Vibrio cholerae 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase IspF or Vc0529 TR:Q9KUJ1 (EMBL:AE004139) (158 aa) fasta scores: E(): 0%2C 72.4%25 id in 156 aa;gbkey=CDS;gene=b2746;inference=similar to sequence:INSDC:AE004139;product=2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase;protein_id=CAL21949.1;transl_table=11
AL590842.1	EMBL	gene	3749432	3750157	.	-	.	ID=gene3306;Name=b2747;gbkey=Gene;gene=b2747;gene_biotype=protein_coding;gene_synonym=ispD;locus_tag=YPO3361
AL590842.1	EMBL	CDS	3749432	3750157	.	-	0	ID=cds3259;Parent=gene3306;Dbxref=GOA:Q8ZBP6,InterPro:IPR001228,InterPro:IPR018294,InterPro:IPR029044,NCBI_GP:CAL21950.1;Name=CAL21950.1;Note=Similar to Escherichia coli 4-diphosphocytidyl-2C-methyl-D-erythritol synthase IspD or B2747 SW:ISPD_ECOLI (Q46893) (236 aa) fasta scores: E(): 0%2C68.2%25 id in 223 aa;gbkey=CDS;gene=b2747;product=4-diphosphocytidyl-2C-methyl-D-erythritol synthase;protein_id=CAL21950.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3749462	3750127	.	-	.	ID=id8092;Note=Pfam match to entry PF01128 UPF0007%2C Uncharacterized protein family UPF0007%2C score 383.40%2C E-value 2.3e-111;gbkey=misc_feature;gene=b2747;inference=protein motif:PF01128
AL590842.1	EMBL	sequence_feature	3749822	3749845	.	-	.	ID=id8093;Note=PS01295 Uncharacterized protein family UPF0007 signature.;gbkey=misc_feature;gene=b2747;inference=protein motif:ProSite:PS01295
AL590842.1	EMBL	gene	3750161	3750481	.	-	.	ID=gene3307;Name=YPO3362;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3362
AL590842.1	EMBL	CDS	3750161	3750481	.	-	0	ID=cds3260;Parent=gene3307;Dbxref=GOA:Q8ZBP5,InterPro:IPR007060,InterPro:IPR023081,NCBI_GP:CAL21951.1;Name=CAL21951.1;Note=Similar to Escherichia coli hypothetical protein YgbQ SW:YGBQ_ECOLI (Q46894) (103 aa) fasta scores: E(): 2.5e-30%2C 75.0%25 id in 104 aa%2C and to Vibrio cholerae hypothetical protein VC0527 TR:Q9KUJ3 (EMBL:AE004139) (96 aa) fasta scores: E(): 1.2e-16%2C 52.1%25 id in 94 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004139;product=conserved hypothetical protein;protein_id=CAL21951.1;transl_table=11
AL590842.1	EMBL	gene	3750795	3751112	.	-	.	ID=gene3308;Name=ygbE;gbkey=Gene;gene=ygbE;gene_biotype=protein_coding;locus_tag=YPO3363
AL590842.1	EMBL	CDS	3750795	3751112	.	-	0	ID=cds3261;Parent=gene3308;Dbxref=InterPro:IPR022721,UniProtKB/TrEMBL:Q0WBT2,NCBI_GP:CAL21952.1;Name=CAL21952.1;Note=Similar to Escherichia coli hypothetical 12.0 kDa protein in surE-cysC intergenic region YgbE SW:YGBE_ECOLI (P46141) (107 aa) fasta scores: E(): 1e-14%2C 47.6%25 id in 103 aa;gbkey=CDS;gene=ygbE;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL21952.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3750807	3750872	.	-	.	ID=id8094;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=ygbE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3750888	3750953	.	-	.	ID=id8095;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=ygbE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3750984	3751049	.	-	.	ID=id8096;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=ygbE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3751303	3751944	.	-	.	ID=gene3309;Name=cysC;gbkey=Gene;gene=cysC;gene_biotype=protein_coding;locus_tag=YPO3364
AL590842.1	EMBL	CDS	3751303	3751944	.	-	0	ID=cds3262;Parent=gene3309;Dbxref=GOA:Q8ZBP3,InterPro:IPR002891,InterPro:IPR027417,NCBI_GP:CAL21953.1;Name=CAL21953.1;Note=Similar to Escherichia coli adenylylsulfate kinase CysC SW:CYSC_ECOLI (P23846) (200 aa) fasta scores: E(): 0%2C80.2%25 id in 197 aa%2C and to Vibrio cholerae adenylylsulfate kinase CysC or Vc2558 TR:Q9KP21 (EMBL:AE004324) (215 aa) fasta scores: E(): 0%2C 63.0%25 id in 211 aa;gbkey=CDS;gene=cysC;inference=similar to sequence:INSDC:AE004324;product=adenylylsulfate kinase;protein_id=CAL21953.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3751363	3751830	.	-	.	ID=id8097;Note=Pfam match to entry PF01583 APS_kinase%2CAdenylylsulfate kinase%2C score 385.20%2C E-value 6.6e-112;gbkey=misc_feature;gene=cysC;inference=protein motif:PF01583
AL590842.1	EMBL	sequence_feature	3751783	3751806	.	-	.	ID=id8098;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=cysC;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3751946	3753382	.	-	.	ID=gene3310;Name=cysN;gbkey=Gene;gene=cysN;gene_biotype=protein_coding;locus_tag=YPO3365
AL590842.1	EMBL	CDS	3751946	3753382	.	-	0	ID=cds3263;Parent=gene3310;Dbxref=GOA:Q8ZBP2,InterPro:IPR000795,InterPro:IPR004161,InterPro:IPR005225,InterPro:IPR009000,InterPro:IPR009001,InterPro:IPR011779,InterPro:IPR027417,NCBI_GP:CAL21954.1;Name=CAL21954.1;Note=Similar to Escherichia coli sulfate adenylyltransferase subunit 1 CysN SW:CYSN_ECOLI (P23845) (475 aa) fasta scores: E(): 0%2C 79.1%25 id in 474 aa%2C and to Vibrio cholerae sulfate adenylate transferase subunit 1 Vc2559 TR:Q9KP20 (EMBL:AE004324) (476 aa) fasta scores: E(): 0%2C 65.1%25 id in 470 aa;gbkey=CDS;gene=cysN;inference=similar to sequence:INSDC:AE004324;product=sulfate adenylyltransferase subunit 1;protein_id=CAL21954.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3752330	3753301	.	-	.	ID=id8099;Note=Pfam match to entry PF00009 GTP_EFTU%2C Elongation factor Tu family%2C score 264.20%2C E-value 1.3e-77;gbkey=misc_feature;gene=cysN;inference=protein motif:PF00009
AL590842.1	EMBL	sequence_feature	3753080	3753127	.	-	.	ID=id8100;Note=PS00301 GTP-binding elongation factors signature.;gbkey=misc_feature;gene=cysN;inference=protein motif:ProSite:PS00301
AL590842.1	EMBL	sequence_feature	3753251	3753274	.	-	.	ID=id8101;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=cysN;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3753475	3754383	.	-	.	ID=gene3311;Name=cysD;gbkey=Gene;gene=cysD;gene_biotype=protein_coding;locus_tag=YPO3366
AL590842.1	EMBL	CDS	3753475	3754383	.	-	0	ID=cds3264;Parent=gene3311;Dbxref=GOA:Q8ZBP1,InterPro:IPR002500,InterPro:IPR011784,InterPro:IPR014729,NCBI_GP:CAL21955.1;Name=CAL21955.1;Note=Similar to Escherichia coli sulfate adenylyltransferase subunit 2 CysD SW:CYSD_ECOLI (P21156) (302 aa) fasta scores: E(): 0%2C 89.7%25 id in 302 aa%2C and to Vibrio cholerae sulfate adenylate transferase subunit 2 Vc2560 TR:Q9KP19 (EMBL:AE004324) (315 aa) fasta scores: E(): 0%2C 81.1%25 id in 302 aa;gbkey=CDS;gene=cysD;inference=similar to sequence:INSDC:AE004324;product=sulfate adenylyltransferase subunit 2;protein_id=CAL21955.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3753640	3754293	.	-	.	ID=id8102;Note=Pfam match to entry PF01507 PAPS_reduct%2CPhosphoadenosine phosphosulfate reductase family%2C score 324.40%2C E-value 1.3e-93;gbkey=misc_feature;gene=cysD;inference=protein motif:PF01507
AL590842.1	EMBL	gene	3754394	3755812	.	-	.	ID=gene3312;Name=cysG;gbkey=Gene;gene=cysG;gene_biotype=protein_coding;locus_tag=YPO3367
AL590842.1	EMBL	CDS	3754394	3755812	.	-	0	ID=cds3265;Parent=gene3312;Dbxref=GOA:Q0WBS8,InterPro:IPR000878,InterPro:IPR003043,InterPro:IPR006366,InterPro:IPR006367,InterPro:IPR012409,InterPro:IPR014776,InterPro:IPR014777,InterPro:IPR016040,InterPro:IPR019478,UniProtKB/TrEMBL:Q0WBS8,NCBI_GP:CAL21956.1;Name=CAL21956.1;Note=Similar to Escherichia coli siroheme synthase [includes: uroporphyrin-III C-methyltransferase%2Cprecorrin-2 oxidase%2C and ferrochelatase] CysG SW:CYSG_ECOLI (P11098) (457 aa) fasta scores: E(): 0%2C 56.1%25 id in 460 aa%2Cand to Neisseria meningitidis siroheme synthase Cysg or Nma1367 SW:CYSG_NEIMA (P57001) (486 aa) fasta scores: E(): 0%2C 60.8%25 id in 464 aa. Similar to YPO0158 (53.5%25 identity in 458 aa overlap);gbkey=CDS;gene=cysG;product=siroheme synthase;protein_id=CAL21956.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3754532	3755167	.	-	.	ID=id8103;Note=Pfam match to entry PF00590 TP_methylase%2CTetrapyrrole (Corrin/Porphyrin) Methylases.%2C score 301.50%2CE-value 1e-86;gbkey=misc_feature;gene=cysG;inference=protein motif:PF00590
AL590842.1	EMBL	sequence_feature	3754829	3754930	.	-	.	ID=id8104;Note=PS00840 Uroporphyrin-III C-methyltransferase signature 2.;gbkey=misc_feature;gene=cysG;inference=protein motif:ProSite:PS00840
AL590842.1	EMBL	sequence_feature	3755111	3755155	.	-	.	ID=id8105;Note=PS00839 Uroporphyrin-III C-methyltransferase signature 1.;gbkey=misc_feature;gene=cysG;inference=protein motif:ProSite:PS00839
AL590842.1	EMBL	gene	3756113	3756379	.	-	.	ID=gene3313;Name=YPO3368;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3368
AL590842.1	EMBL	CDS	3756113	3756379	.	-	0	ID=cds3266;Parent=gene3313;Dbxref=UniProtKB/TrEMBL:Q74XS1,NCBI_GP:CAL21957.1;Name=CAL21957.1;Note=no significant database matches;gbkey=CDS;product=putative membrane protein;protein_id=CAL21957.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3756200	3756265	.	-	.	ID=id8106;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3756778	3757185	.	+	.	ID=gene3314;Name=YPO3369;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3369
AL590842.1	EMBL	CDS	3756778	3757185	.	+	0	ID=cds3267;Parent=gene3314;Dbxref=GOA:Q0WBS6,InterPro:IPR005357,InterPro:IPR013321,PDB:4P78,PDB:4P7D,UniProtKB/TrEMBL:Q0WBS6,NCBI_GP:CAL21958.1;Name=CAL21958.1;Note=Similar to Bacteriophage HP1 hypothetical protein SW:YO14_BPHP1 (P51716) (133 aa) fasta scores: E(): 3.2e-14%2C40.4%25 id in 136 aa%2C and to Escherichia coli YcfB protein TR:BAB12617 (EMBL:AP002527) (145 aa) fasta scores: E(): 0.011%2C 27.6%25 id in 127 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP002527;product=conserved hypothetical protein;protein_id=CAL21958.1;transl_table=11
AL590842.1	EMBL	pseudogene	3757431	3758154	.	-	.	ID=gene3315;Name=cysH;gbkey=Gene;gene=cysH;gene_biotype=pseudogene;locus_tag=YPO3370;pseudo=true
AL590842.1	EMBL	CDS	3757431	3758154	.	-	0	ID=cds3268;Parent=gene3315;Note=Similar to Escherichia coli phosphoadenosine phosphosulfate reductase CysH SW:CYSH_ECOLI (P17854) (243 aa) fasta scores: E(): 0%2C 77.8%25 id in 243 aa%2C and to Salmonella typhimurium phosphoadenosine phosphosulfate reductase CysH SW:CYSH_SALTY (P17853) (243 aa) fasta scores: E(): 0%2C 79.4%25 id in 243 aa. There is a frameshift around codon 154. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=cysH;product=phosphoadenosine phosphosulfate reductase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	3758151	3759881	.	-	.	ID=gene3316;Name=cysI;gbkey=Gene;gene=cysI;gene_biotype=protein_coding;locus_tag=YPO3371
AL590842.1	EMBL	CDS	3758151	3759881	.	-	0	ID=cds3269;Parent=gene3316;Dbxref=GOA:Q8ZBN7,InterPro:IPR005117,InterPro:IPR006066,InterPro:IPR006067,InterPro:IPR011786,NCBI_GP:CAL21960.1;Name=CAL21960.1;Note=Similar to Escherichia coli sulfite reductase [NADPH] hemoprotein beta-component CysI SW:CYSI_ECOLI (P17846) (569 aa) fasta scores: E(): 0%2C 80.4%25 id in 570 aa%2Cand to Salmonella typhimurium sulfite reductase [NADPH] hemoprotein beta-component CysI SW:CYSI_SALTY (P17845) (569 aa) fasta scores: E(): 0%2C 80.9%25 id in 570 aa;gbkey=CDS;gene=cysI;product=sulfite reductase [NADPH] hemoprotein beta-component;protein_id=CAL21960.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3758385	3758594	.	-	.	ID=id8107;Note=Pfam match to entry PF01077 NIR_SIR%2C Nitrite and sulphite reductase 4Fe-4S domain%2C score 106.40%2C E-value 5.7e-28;gbkey=misc_feature;gene=cysI;inference=protein motif:PF01077
AL590842.1	EMBL	sequence_feature	3758400	3758450	.	-	.	ID=id8108;Note=PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site.;gbkey=misc_feature;gene=cysI;inference=protein motif:ProSite:PS00365
AL590842.1	EMBL	gene	3759881	3761701	.	-	.	ID=gene3317;Name=cysJ;gbkey=Gene;gene=cysJ;gene_biotype=protein_coding;locus_tag=YPO3372
AL590842.1	EMBL	CDS	3759881	3761701	.	-	0	ID=cds3270;Parent=gene3317;Dbxref=GOA:Q8ZBN6,InterPro:IPR001094,InterPro:IPR001433,InterPro:IPR001709,InterPro:IPR003097,InterPro:IPR008254,InterPro:IPR010199,InterPro:IPR017927,InterPro:IPR017938,InterPro:IPR023173,InterPro:IPR029039,InterPro:IPR029758,NCBI_GP:CAL21961.1;Name=CAL21961.1;Note=Similar to Escherichia coli sulfite reductase [NADPH] flavoprotein alpha-component CysJ SW:CYSJ_ECOLI (P38038) (598 aa) fasta scores: E(): 0%2C 74.9%25 id in 606 aa%2Cand to Salmonella typhimurium sulfite reductase [NADPH] flavoprotein alpha-component CysJ SW:CYSJ_SALTY (P38039) (598 aa) fasta scores: E(): 0%2C 73.7%25 id in 605 aa;gbkey=CDS;gene=cysJ;product=sulfite reductase [NADPH] flavoprotein alpha-component;protein_id=CAL21961.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3759986	3760327	.	-	.	ID=id8109;Note=Pfam match to entry PF00175 oxidored_fad%2COxidoreductase FAD/NAD-binding domain%2C score 147.80%2CE-value 1.9e-40;gbkey=misc_feature;gene=cysJ;inference=protein motif:PF00175
AL590842.1	EMBL	sequence_feature	3760409	3760996	.	-	.	ID=id8110;Note=Pfam match to entry PF00667 FAD_binding%2C FAD binding domain%2C score 189.80%2C E-value 4.4e-53;gbkey=misc_feature;gene=cysJ;inference=protein motif:PF00667
AL590842.1	EMBL	sequence_feature	3761168	3761257	.	-	.	ID=id8111;Note=Pfam match to entry PF00258 flavodoxin%2C Flavodoxins%2Cscore 15.30%2C E-value 0.0054;gbkey=misc_feature;gene=cysJ;inference=protein motif:PF00258
AL590842.1	EMBL	gene	3762094	3762453	.	+	.	ID=gene3318;Name=ygcM;gbkey=Gene;gene=ygcM;gene_biotype=protein_coding;locus_tag=YPO3373
AL590842.1	EMBL	CDS	3762094	3762453	.	+	0	ID=cds3271;Parent=gene3318;Dbxref=GOA:Q0WBS3,InterPro:IPR007115,UniProtKB/TrEMBL:Q0WBS3,NCBI_GP:CAL21962.1;Name=CAL21962.1;Note=Similar to Escherichia coli putative 6-pyruvoyl tetrahydrobiopterin synthase YgcM SW:PTPS_ECOLI (Q46903) (121 aa) fasta scores: E(): 0%2C 83.2%25 id in 119 aa%2C and to Vibrio cholerae putative 6-pyruvoyl tetrahydrobiopterin synthase Vc1299 TR:Q9KSF7 (EMBL:AE004209) (122 aa) fasta scores: E(): 0%2C 76.5%25 id in 119 aa;gbkey=CDS;gene=ygcM;inference=similar to sequence:INSDC:AE004209;product=putative 6-pyruvoyl tetrahydrobiopterin synthase family protein;protein_id=CAL21962.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3762094	3762450	.	+	.	ID=id8112;Note=Pfam match to entry PF01242 PTPS%2C 6-pyruvoyl tetrahydropterin synthase%2C score 241.30%2C E-value 1.4e-68;gbkey=misc_feature;gene=ygcM;inference=protein motif:PF01242
AL590842.1	EMBL	gene	3762687	3763358	.	-	.	ID=gene3319;Name=YPO3374;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3374
AL590842.1	EMBL	CDS	3762687	3763358	.	-	0	ID=cds3272;Parent=gene3319;Dbxref=GOA:Q7CKD0,InterPro:IPR007197,InterPro:IPR013785,InterPro:IPR024924,InterPro:IPR027609,UniProtKB/TrEMBL:Q7CKD0,NCBI_GP:CAL21963.1;Name=CAL21963.1;Note=Similar to Escherichia coli hypothetical protein YgcF SW:YGCF_ECOLI (P55139) (223 aa) fasta scores: E(): 0%2C79.4%25 id in 223 aa%2C and to Vibrio cholerae hypothetical protein VC1365 TR:Q9KS94 (EMBL:AE004216) (245 aa) fasta scores: E(): 0%2C 60.5%25 id in 223 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004216;product=conserved hypothetical protein;protein_id=CAL21963.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3763242	3763352	.	-	.	ID=id8113;Note=Pfam match to entry PF02143 RADICAL_ACTIVATING%2CRadical activating enzymes%2C score 40.20%2C E-value 4.7e-08;gbkey=misc_feature;inference=protein motif:PF02143
AL590842.1	EMBL	gene	3763462	3764067	.	-	.	ID=gene3320;Name=sodC;gbkey=Gene;gene=sodC;gene_biotype=protein_coding;locus_tag=YPO3375
AL590842.1	EMBL	CDS	3763462	3764067	.	-	0	ID=cds3273;Parent=gene3320;Dbxref=GOA:Q74XS8,InterPro:IPR001424,InterPro:IPR018152,UniProtKB/TrEMBL:Q74XS8,NCBI_GP:CAL21964.1;Name=CAL21964.1;Note=Similar to Escherichia coli superoxide dismutase [Cu-Zn] precursor SodC SW:SODC_ECOLI (P53635) (173 aa) fasta scores: E(): 0%2C 59.9%25 id in 162 aa%2C and to Salmonella typhimurium superoxide dismutase [Cu-Zn] precursor SodC or SodcI SW:SODC_SALTY (P53636) (177 aa) fasta scores: E(): 0%2C75.6%25 id in 160 aa;gbkey=CDS;gene=sodC;product=superoxide dismutase [Cu-Zn] precursor;protein_id=CAL21964.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3763465	3763917	.	-	.	ID=id8114;Note=Pfam match to entry PF00080 sodcu%2C Copper/zinc superoxide dismutase (SODC)%2C score 169.70%2C E-value 1.5e-51;gbkey=misc_feature;gene=sodC;inference=protein motif:PF00080
AL590842.1	EMBL	sequence_feature	3763468	3763503	.	-	.	ID=id8115;Note=PS00332 Copper/Zinc superoxide dismutase signature 2.;gbkey=misc_feature;gene=sodC;inference=protein motif:ProSite:PS00332
AL590842.1	EMBL	sequence_feature	3763762	3763794	.	-	.	ID=id8116;Note=PS00087 Copper/Zinc superoxide dismutase signature 1.;gbkey=misc_feature;gene=sodC;inference=protein motif:ProSite:PS00087
AL590842.1	EMBL	gene	3764439	3765734	.	-	.	ID=gene3321;Name=eno;gbkey=Gene;gene=eno;gene_biotype=protein_coding;locus_tag=YPO3376
AL590842.1	EMBL	CDS	3764439	3765734	.	-	0	ID=cds3274;Parent=gene3321;Dbxref=GOA:Q8ZBN2,InterPro:IPR000941,InterPro:IPR020809,InterPro:IPR020810,InterPro:IPR020811,InterPro:IPR029017,InterPro:IPR029065,NCBI_GP:CAL21965.1;Name=CAL21965.1;Note=Similar to Escherichia coli enolase Eno SW:ENO_ECOLI (P08324) (431 aa) fasta scores: E(): 0%2C 94.4%25 id in 430 aa%2Cand to Enterococcus faecalis enolase Eno TR:Q9K596 (EMBL:AJ401152) (432 aa) fasta scores: E(): 0%2C 66.0%25 id in 430 aa;gbkey=CDS;gene=eno;inference=similar to sequence:INSDC:AJ401152;product=enolase;protein_id=CAL21965.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3764442	3765731	.	-	.	ID=id8117;Note=Pfam match to entry PF00113 enolase%2C Enol-ase%2C score 904.90%2C E-value 2.3e-268;gbkey=misc_feature;gene=eno;inference=protein motif:PF00113
AL590842.1	EMBL	sequence_feature	3764679	3764720	.	-	.	ID=id8118;Note=PS00164 Enolase signature.;gbkey=misc_feature;gene=eno;inference=protein motif:ProSite:PS00164
AL590842.1	EMBL	gene	3765815	3767452	.	-	.	ID=gene3322;Name=pyrG;gbkey=Gene;gene=pyrG;gene_biotype=protein_coding;locus_tag=YPO3377
AL590842.1	EMBL	CDS	3765815	3767452	.	-	0	ID=cds3275;Parent=gene3322;Dbxref=GOA:Q8ZBN1,InterPro:IPR004468,InterPro:IPR017456,InterPro:IPR017926,InterPro:IPR027417,InterPro:IPR029062,NCBI_GP:CAL21966.1;Name=CAL21966.1;Note=Similar to Escherichia coli CTP synthase PyrG SW:PYRG_ECOLI (P08398) (544 aa) fasta scores: E(): 0%2C 88.8%25 id in 544 aa%2C and to Haemophilus influenzae CTP synthase PyrG or Hi1077 SW:PYRG_HAEIN (P44341) (545 aa) fasta scores: E(): 0%2C 81.7%25 id in 545 aa;gbkey=CDS;gene=pyrG;product=CTP synthase;protein_id=CAL21966.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3765848	3766555	.	-	.	ID=id8119;Note=Pfam match to entry PF00117 GATase%2C Glutamine amidotransferase class-I%2C score 266.90%2C E-value 2.7e-76;gbkey=misc_feature;gene=pyrG;inference=protein motif:PF00117
AL590842.1	EMBL	sequence_feature	3766298	3766333	.	-	.	ID=id8120;Note=PS00442 Glutamine amidotransferases class-I active site.;gbkey=misc_feature;gene=pyrG;inference=protein motif:ProSite:PS00442
AL590842.1	EMBL	gene	3767664	3768506	.	-	.	ID=gene3323;Name=YPO3378;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3378
AL590842.1	EMBL	CDS	3767664	3768506	.	-	0	ID=cds3276;Parent=gene3323;Dbxref=InterPro:IPR004518,InterPro:IPR011551,UniProtKB/TrEMBL:Q7CKD1,NCBI_GP:CAL21967.1;Name=CAL21967.1;Note=Similar to Escherichia coli hypothetical protein MazG SW:MAZG_ECOLI (P33646) (263 aa) fasta scores: E(): 0%2C72.6%25 id in 266 aa%2C and to Vibrio cholerae MazG protein VC2450 TR:Q9KPC2 (EMBL:AE004315) (278 aa) fasta scores: E(): 0%2C 56.0%25 id in 268 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004315;product=conserved hypothetical protein;protein_id=CAL21967.1;transl_table=11
AL590842.1	EMBL	gene	3768513	3768671	.	-	.	ID=gene3324;Name=YPO3379;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3379
AL590842.1	EMBL	CDS	3768513	3768671	.	-	0	ID=cds3277;Parent=gene3324;Dbxref=UniProtKB/TrEMBL:Q74XT0,NCBI_GP:CAL21968.1;Name=CAL21968.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL21968.1;transl_table=11
AL590842.1	EMBL	gene	3768708	3770942	.	-	.	ID=gene3325;Name=relA;gbkey=Gene;gene=relA;gene_biotype=protein_coding;locus_tag=YPO3380
AL590842.1	EMBL	CDS	3768708	3770942	.	-	0	ID=cds3278;Parent=gene3325;Dbxref=GOA:Q7CKD2,InterPro:IPR002912,InterPro:IPR004095,InterPro:IPR004811,InterPro:IPR007685,InterPro:IPR012675,InterPro:IPR012676,UniProtKB/TrEMBL:Q7CKD2,NCBI_GP:CAL21969.1;Name=CAL21969.1;Note=Similar to Escherichia coli GTP pyrophosphokinase RelA SW:RELA_ECOLI (P11585) (744 aa) fasta scores: E(): 0%2C84.7%25 id in 745 aa%2C and to Vibrio cholerae GTP pyrophosphokinase RelA or Vc2451 TR:Q9S3S3 (EMBL:AF175295) (738 aa) fasta scores: E(): 0%2C 64.0%25 id in 741 aa;gbkey=CDS;gene=relA;inference=similar to sequence:INSDC:AF175295;product=GTP pyrophosphokinase;protein_id=CAL21969.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3768720	3768950	.	-	.	ID=id8121;Note=Pfam match to entry PF01842 ACT%2C ACT domain%2C score 54.30%2C E-value 2.6e-12;gbkey=misc_feature;gene=relA;inference=protein motif:PF01842
AL590842.1	EMBL	gene	3771386	3774178	.	+	.	ID=gene3326;Name=barA;gbkey=Gene;gene=barA;gene_biotype=protein_coding;locus_tag=YPO3381
AL590842.1	EMBL	CDS	3771386	3774178	.	+	0	ID=cds3279;Parent=gene3326;Dbxref=GOA:Q0WBR5,InterPro:IPR001789,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR008207,InterPro:IPR009082,InterPro:IPR011006,InterPro:IPR019247,UniProtKB/TrEMBL:Q0WBR5,NCBI_GP:CAL21970.1;Name=CAL21970.1;Note=Similar to Escherichia coli sensor protein BarA SW:BARA_ECOLI (P26607) (918 aa) fasta scores: E(): 0%2C 61.6%25 id in 928 aa%2C and to Erwinia carotovora subsp. carotovora sensor/regulator protein RpfA TR:O08235 (EMBL:U62023) (929 aa) fasta scores: E(): 0%2C 59.7%25 id in 938 aa;gbkey=CDS;gene=barA;inference=similar to sequence:INSDC:U62023;product=two-component regulatory protein;protein_id=CAL21970.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3771413	3771481	.	+	.	ID=id8122;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=barA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3771911	3771979	.	+	.	ID=id8123;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=barA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3771920	3772129	.	+	.	ID=id8124;Note=Pfam match to entry PF00672 DUF5%2C HAMP domain%2C score 58.30%2C E-value 1.7e-13;gbkey=misc_feature;gene=barA;inference=protein motif:PF00672
AL590842.1	EMBL	sequence_feature	3772286	3772933	.	+	.	ID=id8125;Note=Pfam match to entry PF00512 signal%2C Histidine kinase%2C score 244.90%2C E-value 1.1e-69;gbkey=misc_feature;gene=barA;inference=protein motif:PF00512
AL590842.1	EMBL	sequence_feature	3773387	3773728	.	+	.	ID=id8126;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 122.70%2C E-value 6.8e-33;gbkey=misc_feature;gene=barA;inference=protein motif:PF00072
AL590842.1	EMBL	gene	3774353	3775798	.	-	.	ID=gene3327;Name=degP;gbkey=Gene;gene=degP;gene_biotype=protein_coding;gene_synonym=gsrA,htrA,ptd;locus_tag=YPO3382
AL590842.1	EMBL	CDS	3774353	3775798	.	-	0	ID=cds3280;Parent=gene3327;Dbxref=GOA:Q7CKD3,InterPro:IPR001478,InterPro:IPR001940,InterPro:IPR009003,InterPro:IPR011782,UniProtKB/TrEMBL:Q7CKD3,NCBI_GP:CAL21971.1;Name=CAL21971.1;Note=Similar to Yersinia enterocolitica GsrA protein TR:P74978 (EMBL:D78376) (478 aa) fasta scores: E(): 0%2C92.3%25 id in 481 aa%2C and to Escherichia coli protease Do precursor DegP or HtrA or Ptd SW:DEGP_ECOLI (P09376) (474 aa) fasta scores: E(): 0%2C 74.9%25 id in 482 aa. Similar to YPO3566 (58.0%25 identity in 483 aa overlap);gbkey=CDS;gene=degP;inference=similar to sequence:INSDC:D78376;product=global stress requirement protein GsrA;protein_id=CAL21971.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3774383	3774631	.	-	.	ID=id8127;Note=Pfam match to entry PF00595 PDZ%2C PDZ domain (Also known as DHR or GLGF).%2C score 62.20%2C E-value 1.1e-14;gbkey=misc_feature;gene=degP;inference=protein motif:PF00595
AL590842.1	EMBL	sequence_feature	3774674	3774949	.	-	.	ID=id8128;Note=Pfam match to entry PF00595 PDZ%2C PDZ domain (Also known as DHR or GLGF).%2C score 73.70%2C E-value 3.7e-18;gbkey=misc_feature;gene=degP;inference=protein motif:PF00595
AL590842.1	EMBL	sequence_feature	3774953	3775456	.	-	.	ID=id8129;Note=Pfam match to entry PF00089 trypsin%2C Trypsin%2C score 108.30%2C E-value 1.5e-33;gbkey=misc_feature;gene=degP;inference=protein motif:PF00089
AL590842.1	EMBL	gene	3775996	3777516	.	-	.	ID=gene3328;Name=dgt;gbkey=Gene;gene=dgt;gene_biotype=protein_coding;locus_tag=YPO3383
AL590842.1	EMBL	CDS	3775996	3777516	.	-	0	ID=cds3281;Parent=gene3328;Dbxref=GOA:Q8ZBM5,InterPro:IPR003607,InterPro:IPR006261,InterPro:IPR006674,InterPro:IPR020779,InterPro:IPR023293,InterPro:IPR026875,InterPro:IPR027432,NCBI_GP:CAL21972.1;Name=CAL21972.1;Note=Similar to Escherichia coli deoxyguanosinetriphosphate triphosphohydrolase Dgt SW:DGTP_ECOLI (P15723) (504 aa) fasta scores: E(): 0%2C 65.1%25 id in 505 aa%2C and to Escherichia fergusonii deoxyguanosinetriphosphate triphosphohydrolase Dgt SW:DGTP_ESCFE (Q59435) (504 aa) fasta scores: E(): 0%2C 65.0%25 id in 505 aa;gbkey=CDS;gene=dgt;product=deoxyguanosinetriphosphate triphosphohydrolase;protein_id=CAL21972.1;transl_table=11
AL590842.1	EMBL	gene	3777810	3778511	.	+	.	ID=gene3329;Name=mtn;gbkey=Gene;gene=mtn;gene_biotype=protein_coding;gene_synonym=pfs;locus_tag=YPO3384
AL590842.1	EMBL	CDS	3777810	3778511	.	+	0	ID=cds3282;Parent=gene3329;Dbxref=GOA:Q7CKD4,InterPro:IPR000845,InterPro:IPR010049,InterPro:IPR018017,NCBI_GP:CAL21973.1;Name=CAL21973.1;Note=Similar to Escherichia coli MTA/SAH nucleosidase Mtn or Pfs SW:MTN_ECOLI (P24247) (232 aa) fasta scores: E(): 0%2C75.3%25 id in 231 aa%2C and to Vibrio cholerae MTA/SAH nucleosidase Vc2379 TR:Q9KPI8 (EMBL:AE004308) (231 aa) fasta scores: E(): 0%2C 62.6%25 id in 230 aa;gbkey=CDS;gene=mtn;inference=similar to sequence:INSDC:AE004308;product=MTA/SAH nucleosidase;protein_id=CAL21973.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3777813	3778487	.	+	.	ID=id8130;Note=Pfam match to entry PF01048 PNP_UDP_1%2C Phosphorylase family%2C score 309.60%2C E-value 3.8e-89;gbkey=misc_feature;gene=mtn;inference=protein motif:PF01048
AL590842.1	EMBL	gene	3778511	3779353	.	+	.	ID=gene3330;Name=btuF;gbkey=Gene;gene=btuF;gene_biotype=protein_coding;gene_synonym=yadT;locus_tag=YPO3385
AL590842.1	EMBL	CDS	3778511	3779353	.	+	0	ID=cds3283;Parent=gene3330;Dbxref=GOA:Q8ZBM3,InterPro:IPR002491,InterPro:IPR023544,NCBI_GP:CAL21974.1;Name=CAL21974.1;Note=Similar to Salmonella typhimurium cobalamin periplasmic binding protein BtuF TR:Q9ZFP9 (EMBL:AF096877) (266 aa) fasta scores: E(): 0%2C 51.7%25 id in 259 aa%2C and to Escherichia coli hypothetical 29.4 kDa protein in hemL-pfs intergenic region precursor YadT SW:YADT_ECOLI (P37028) (266 aa) fasta scores: E(): 0%2C 54.6%25 id in 260 aa;gbkey=CDS;gene=btuF;inference=similar to sequence:INSDC:AF096877;product=putative priplasmic metal binding protein;protein_id=CAL21974.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3778592	3779260	.	+	.	ID=id8131;Note=Pfam match to entry PF01497 Peripla_BP_2%2CPeriplasmic binding protein%2C score 143.40%2C E-value 4.1e-39;gbkey=misc_feature;gene=btuF;inference=protein motif:PF01497
AL590842.1	EMBL	gene	3779353	3779967	.	+	.	ID=gene3331;Name=yadS;gbkey=Gene;gene=yadS;gene_biotype=protein_coding;locus_tag=YPO3386
AL590842.1	EMBL	CDS	3779353	3779967	.	+	0	ID=cds3284;Parent=gene3331;Dbxref=InterPro:IPR005115,UniProtKB/TrEMBL:Q0WBR0,NCBI_GP:CAL21975.1;Name=CAL21975.1;Note=Similar to Escherichia coli hypothetical 22.1 kDa protein in hemL-pfs intergenic region YadS SW:YADS_ECOLI (P37027) (207 aa) fasta scores: E(): 0%2C 86.7%25 id in 203 aa%2Cand to Vibrio cholerae hypothetical protein Vc2382 TR:Q9KPI5 (EMBL:AE004308) (239 aa) fasta scores: E(): 0%2C66.7%25 id in 201 aa;gbkey=CDS;gene=yadS;inference=similar to sequence:INSDC:AE004308;product=putative membrane protein;protein_id=CAL21975.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3779362	3779421	.	+	.	ID=id8132;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=yadS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3779440	3779508	.	+	.	ID=id8133;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=yadS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3779536	3779589	.	+	.	ID=id8134;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=yadS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3779608	3779667	.	+	.	ID=id8135;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=yadS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3779695	3779763	.	+	.	ID=id8136;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=yadS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3779797	3779856	.	+	.	ID=id8137;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=yadS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3779866	3779925	.	+	.	ID=id8138;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=yadS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3780252	3780596	.	-	.	ID=gene3332;Name=YPO3387;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3387
AL590842.1	EMBL	CDS	3780252	3780596	.	-	0	ID=cds3285;Parent=gene3332;Dbxref=GOA:Q0WBQ9,InterPro:IPR000361,InterPro:IPR016092,InterPro:IPR017870,InterPro:IPR023063,NCBI_GP:CAL21976.1;Name=CAL21976.1;Note=Similar to Escherichia coli hypothetical protein YadR SW:YADR_ECOLI (P37026) (114 aa) fasta scores: E(): 0%2C88.6%25 id in 114 aa%2C and to Haemophilus influenzae hypothetical protein HI1723 SW:YADR_HAEIN (P45344) (114 aa) fasta scores: E(): 0%2C 78.9%25 id in 114 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21976.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3780258	3780575	.	-	.	ID=id8139;Note=Pfam match to entry PF01521 HesB-like%2C HesB-like domain%2C score 201.10%2C E-value 1.7e-56;gbkey=misc_feature;inference=protein motif:PF01521
AL590842.1	EMBL	sequence_feature	3780261	3780314	.	-	.	ID=id8140;Note=PS01152 Hypothetical hesB/yadR/yfhF family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01152
AL590842.1	EMBL	gene	3780732	3782075	.	-	.	ID=gene3333;Name=yadQ;gbkey=Gene;gene=yadQ;gene_biotype=protein_coding;locus_tag=YPO3388
AL590842.1	EMBL	CDS	3780732	3782057	.	-	0	ID=cds3286;Parent=gene3333;Dbxref=GOA:Q8ZBM0,InterPro:IPR001807,InterPro:IPR014743,InterPro:IPR023861,NCBI_GP:CAL21977.1;Name=CAL21977.1;Note=Similar to Escherichia coli hypothetical 46.0 kDa protein in hemL-pfs intergenic region YadQ SW:YADQ_ECOLI (P37019) (436 aa) fasta scores: E(): 0%2C 72.7%25 id in 436 aa%2Cand to Vibrio cholerae hypothetical protein Vca0526 TR:Q9KM62 (EMBL:AE004383) (468 aa) fasta scores: E(): 0%2C58.3%25 id in 432 aa;gbkey=CDS;gene=yadQ;inference=similar to sequence:INSDC:AE004383;product=putative chloride channel protein;protein_id=CAL21977.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3780849	3781916	.	-	.	ID=id8141;Note=Pfam match to entry PF00654 voltage_CLC%2C Voltage gated chloride channels%2C score 351.50%2C E-value 3.3e-103;gbkey=misc_feature;gene=yadQ;inference=protein motif:PF00654
AL590842.1	EMBL	sequence_feature	3780849	3780905	.	-	.	ID=id8142;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yadQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3780969	3781034	.	-	.	ID=id8143;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yadQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3781065	3781130	.	-	.	ID=id8144;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yadQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3781152	3781217	.	-	.	ID=id8145;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yadQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3781230	3781295	.	-	.	ID=id8146;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yadQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3781347	3781412	.	-	.	ID=id8147;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yadQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3781473	3781538	.	-	.	ID=id8148;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yadQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3781566	3781631	.	-	.	ID=id8149;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yadQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3781620	3781652	.	-	.	ID=id8150;Note=PS00639 Eukaryotic thiol (cysteine) proteases histidine active site.;gbkey=misc_feature;gene=yadQ;inference=protein motif:ProSite:PS00639
AL590842.1	EMBL	sequence_feature	3781731	3781796	.	-	.	ID=id8151;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yadQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3781878	3781943	.	-	.	ID=id8152;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yadQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3782010	3782075	.	-	.	ID=id8153;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yadQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3782549	3783829	.	+	.	ID=gene3334;Name=gsa;gbkey=Gene;gene=gsa;gene_biotype=protein_coding;gene_synonym=hemL,popC;locus_tag=YPO3389
AL590842.1	EMBL	CDS	3782549	3783829	.	+	0	ID=cds3287;Parent=gene3334;Dbxref=GOA:Q8ZBL9,InterPro:IPR004639,InterPro:IPR005814,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,PDB:4E77,NCBI_GP:CAL21978.1;Name=CAL21978.1;Note=Similar to Escherichia coli glutamate-1-semialdehyde 2%2C1-aminomutase HemL or Gsa or PopC SW:GSA_ECOLI (P23893) (426 aa) fasta scores: E(): 0%2C 88.5%25 id in 426 aa%2C and to Salmonella enterica serovar Typhimurium glutamate 1-semialdehyde aminotransferase HemL TR:CAC03102 (EMBL:AJ278741) (426 aa) fasta scores: E(): 0%2C 88.0%25 id in 426 aa;gbkey=CDS;gene=gsa;inference=similar to sequence:INSDC:AJ278741;product=glutamate-1-semialdehyde 2%2C1-aminomutase;protein_id=CAL21978.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3782669	3783763	.	+	.	ID=id8154;Note=Pfam match to entry PF00202 aminotran_3%2CAminotransferases class-III pyridoxal-phosphate%2C score 358.80%2C E-value 3.1e-124;gbkey=misc_feature;gene=gsa;inference=protein motif:PF00202
AL590842.1	EMBL	sequence_feature	3783248	3783358	.	+	.	ID=id8155;Note=PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.;gbkey=misc_feature;gene=gsa;inference=protein motif:ProSite:PS00600
AL590842.1	EMBL	gene	3784203	3786200	.	-	.	ID=gene3335;Name=fhuB;gbkey=Gene;gene=fhuB;gene_biotype=protein_coding;locus_tag=YPO3390
AL590842.1	EMBL	CDS	3784203	3786200	.	-	0	ID=cds3288;Parent=gene3335;Dbxref=GOA:Q74XT8,InterPro:IPR000522,InterPro:IPR029022,UniProtKB/TrEMBL:Q74XT8,NCBI_GP:CAL21979.1;Name=CAL21979.1;Note=Similar to Escherichia coli ferrichrome transport system permease protein FhuB SW:FHUB_ECOLI (P06972) (660 aa) fasta scores: E(): 0%2C 68.3%25 id in 654 aa%2C and to Rhizobium leguminosarum FhuB TR:Q9S6S8 (EMBL:AJ007906) (634 aa) fasta scores: E(): 0%2C 46.3%25 id in 643 aa;gbkey=CDS;gene=fhuB;inference=similar to sequence:INSDC:AJ007906;product=ferrichrome transport system permease protein FhuB;protein_id=CAL21979.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3784215	3785093	.	-	.	ID=id8156;Note=Pfam match to entry PF01032 FecCD_family%2C FecCD transport family%2C score 202.60%2C E-value 6.2e-57;gbkey=misc_feature;gene=fhuB;inference=protein motif:PF01032
AL590842.1	EMBL	sequence_feature	3784221	3784286	.	-	.	ID=id8157;Note=one of 20 probable transmembrane helices predicted;gbkey=misc_feature;gene=fhuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3784317	3784382	.	-	.	ID=id8158;Note=one of 20 probable transmembrane helices predicted;gbkey=misc_feature;gene=fhuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3784419	3784484	.	-	.	ID=id8159;Note=one of 20 probable transmembrane helices predicted;gbkey=misc_feature;gene=fhuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3784497	3784550	.	-	.	ID=id8160;Note=one of 20 probable transmembrane helices predicted;gbkey=misc_feature;gene=fhuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3784572	3784637	.	-	.	ID=id8161;Note=one of 20 probable transmembrane helices predicted;gbkey=misc_feature;gene=fhuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3784683	3784748	.	-	.	ID=id8162;Note=one of 20 probable transmembrane helices predicted;gbkey=misc_feature;gene=fhuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3784770	3784835	.	-	.	ID=id8163;Note=one of 20 probable transmembrane helices predicted;gbkey=misc_feature;gene=fhuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3784848	3784913	.	-	.	ID=id8164;Note=one of 20 probable transmembrane helices predicted;gbkey=misc_feature;gene=fhuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3784953	3785018	.	-	.	ID=id8165;Note=one of 20 probable transmembrane helices predicted;gbkey=misc_feature;gene=fhuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3785079	3785144	.	-	.	ID=id8166;Note=one of 20 probable transmembrane helices predicted;gbkey=misc_feature;gene=fhuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3785208	3785258	.	-	.	ID=id8167;Note=one of 20 probable transmembrane helices predicted;gbkey=misc_feature;gene=fhuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3785211	3786104	.	-	.	ID=id8168;Note=Pfam match to entry PF01032 FecCD_family%2C FecCD transport family%2C score 153.40%2C E-value 3.8e-42;gbkey=misc_feature;gene=fhuB;inference=protein motif:PF01032
AL590842.1	EMBL	sequence_feature	3785289	3785354	.	-	.	ID=id8169;Note=one of 20 probable transmembrane helices predicted;gbkey=misc_feature;gene=fhuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3785376	3785432	.	-	.	ID=id8170;Note=one of 20 probable transmembrane helices predicted;gbkey=misc_feature;gene=fhuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3785445	3785510	.	-	.	ID=id8171;Note=one of 20 probable transmembrane helices predicted;gbkey=misc_feature;gene=fhuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3785550	3785606	.	-	.	ID=id8172;Note=one of 20 probable transmembrane helices predicted;gbkey=misc_feature;gene=fhuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3785685	3785750	.	-	.	ID=id8173;Note=one of 20 probable transmembrane helices predicted;gbkey=misc_feature;gene=fhuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3785772	3785828	.	-	.	ID=id8174;Note=one of 20 probable transmembrane helices predicted;gbkey=misc_feature;gene=fhuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3785859	3785915	.	-	.	ID=id8175;Note=one of 20 probable transmembrane helices predicted;gbkey=misc_feature;gene=fhuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3785952	3786002	.	-	.	ID=id8176;Note=one of 20 probable transmembrane helices predicted;gbkey=misc_feature;gene=fhuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3786099	3786164	.	-	.	ID=id8177;Note=one of 20 probable transmembrane helices predicted;gbkey=misc_feature;gene=fhuB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3786197	3787108	.	-	.	ID=gene3336;Name=fhuD;gbkey=Gene;gene=fhuD;gene_biotype=protein_coding;locus_tag=YPO3391
AL590842.1	EMBL	CDS	3786197	3787108	.	-	0	ID=cds3289;Parent=gene3336;Dbxref=InterPro:IPR002491,InterPro:IPR008091,UniProtKB/TrEMBL:Q74XT9,NCBI_GP:CAL21980.1;Name=CAL21980.1;Note=Similar to Escherichia coli ferrichrome-binding periplasmic protein precursor FhuD SW:FHUD_ECOLI (P07822) (296 aa) fasta scores: E(): 0%2C 54.6%25 id in 262 aa%2C and to Rhizobium leguminosarum FhuD TR:O86462 (EMBL:AJ007906) (301 aa) fasta scores: E(): 6.2e-24%2C 32.8%25 id in 259 aa;gbkey=CDS;gene=fhuD;inference=similar to sequence:INSDC:AJ007906;product=ferrichrome-binding periplasmic protein precursor;protein_id=CAL21980.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3786272	3786988	.	-	.	ID=id8178;Note=Pfam match to entry PF01497 Peripla_BP_2%2CPeriplasmic binding protein%2C score 50.70%2C E-value 3.2e-11;gbkey=misc_feature;gene=fhuD;inference=protein motif:PF01497
AL590842.1	EMBL	sequence_feature	3786398	3786427	.	-	.	ID=id8179;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.;gbkey=misc_feature;gene=fhuD;inference=protein motif:ProSite:PS00339
AL590842.1	EMBL	gene	3787285	3788079	.	-	.	ID=gene3337;Name=fhuC;gbkey=Gene;gene=fhuC;gene_biotype=protein_coding;locus_tag=YPO3392
AL590842.1	EMBL	CDS	3787285	3788079	.	-	0	ID=cds3290;Parent=gene3337;Dbxref=GOA:Q7CKD5,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CKD5,NCBI_GP:CAL21981.1;Name=CAL21981.1;Note=Similar to Escherichia coli ferrichrome transport ATP-binding protein FhuC SW:FHUC_ECOLI (P07821) (265 aa) fasta scores: E(): 0%2C 80.8%25 id in 260 aa%2C and to Rhizobium leguminosarum FhuC TR:O86461 (EMBL:AJ007906) (268 aa) fasta scores: E(): 0%2C 51.6%25 id in 254 aa;gbkey=CDS;gene=fhuC;inference=similar to sequence:INSDC:AJ007906;product=ferrichrome transport ATP-binding protein FhuC;protein_id=CAL21981.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3787411	3787974	.	-	.	ID=id8180;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 201.20%2C E-value 1.6e-56;gbkey=misc_feature;gene=fhuC;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	3787597	3787641	.	-	.	ID=id8181;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=fhuC;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	3787930	3787953	.	-	.	ID=id8182;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=fhuC;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3788401	3790875	.	-	.	ID=gene3338;Name=b0149;gbkey=Gene;gene=b0149;gene_biotype=protein_coding;gene_synonym=mrcB,pbpF,ponB;locus_tag=YPO3393
AL590842.1	EMBL	CDS	3788401	3790875	.	-	0	ID=cds3291;Parent=gene3338;Dbxref=GOA:Q0WBQ3,InterPro:IPR001264,InterPro:IPR001460,InterPro:IPR011813,InterPro:IPR012338,InterPro:IPR023346,InterPro:IPR028166,UniProtKB/TrEMBL:Q0WBQ3,NCBI_GP:CAL21982.1;Name=CAL21982.1;Note=Similar to Escherichia coli penicillin-binding protein 1B MrcB or PonB or PbpF or B0149 SW:PBPB_ECOLI (P02919) (844 aa) fasta scores: E(): 0%2C 69.6%25 id in 851 aa%2Cand to Citrobacter freundii penicillin-binding protein 1B TR:Q46049 (EMBL:Z49960) (846 aa) fasta scores: E(): 0%2C69.0%25 id in 851 aa. This CDS has a deletion at the C-terminal end relative to E. coli;gbkey=CDS;gene=b0149;inference=similar to sequence:INSDC:Z49960;product=penicillin-binding protein 1B;protein_id=CAL21982.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3788638	3789537	.	-	.	ID=id8183;Note=Pfam match to entry PF00905 Transpeptidase%2CPenicillin binding protein transpeptidase domain%2C score 14.40%2C E-value 1.3e-07;gbkey=misc_feature;gene=b0149;inference=protein motif:PF00905
AL590842.1	EMBL	sequence_feature	3789766	3790284	.	-	.	ID=id8184;Note=Pfam match to entry PF00912 Transglycosyl%2CTransglycosylase%2C score 330.50%2C E-value 1.9e-95;gbkey=misc_feature;gene=b0149;inference=protein motif:PF00912
AL590842.1	EMBL	sequence_feature	3790606	3790671	.	-	.	ID=id8185;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=b0149;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3790984	3793470	.	-	.	ID=gene3339;Name=hrpB;gbkey=Gene;gene=hrpB;gene_biotype=protein_coding;locus_tag=YPO3394
AL590842.1	EMBL	CDS	3790984	3793470	.	-	0	ID=cds3292;Parent=gene3339;Dbxref=GOA:Q0WBQ2,InterPro:IPR001650,InterPro:IPR007502,InterPro:IPR010225,InterPro:IPR011545,InterPro:IPR013689,InterPro:IPR014001,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WBQ2,NCBI_GP:CAL21983.1;Name=CAL21983.1;Note=Similar to Rhizobium meliloti helicase HelO TR:Q52902 (EMBL:U49051) (821 aa) fasta scores: E(): 0%2C43.1%25 id in 824 aa%2C and to Escherichia coli ATP-dependent helicase HrpB SW:HRPB_ECOLI (P37024) (809 aa) fasta scores: E(): 0%2C 65.6%25 id in 816 aa;gbkey=CDS;gene=hrpB;inference=similar to sequence:INSDC:U49051;product=ATP-dependent helicase;protein_id=CAL21983.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3791506	3791535	.	-	.	ID=id8186;Note=PS00215 Mitochondrial energy transfer proteins signature.;gbkey=misc_feature;gene=hrpB;inference=protein motif:ProSite:PS00215
AL590842.1	EMBL	sequence_feature	3792445	3792747	.	-	.	ID=id8187;Note=Pfam match to entry PF00271 helicase_C%2C Helicases conserved C-terminal domain%2C score 19.20%2C E-value 0.002;gbkey=misc_feature;gene=hrpB;inference=protein motif:PF00271
AL590842.1	EMBL	sequence_feature	3793342	3793365	.	-	.	ID=id8188;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=hrpB;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3793586	3794161	.	+	.	ID=gene3340;Name=ligT;gbkey=Gene;gene=ligT;gene_biotype=protein_coding;locus_tag=YPO3395
AL590842.1	EMBL	CDS	3793586	3794161	.	+	0	ID=cds3293;Parent=gene3340;Dbxref=GOA:Q7CKD6,InterPro:IPR004175,InterPro:IPR009097,InterPro:IPR014051,UniProtKB/TrEMBL:Q7CKD6,NCBI_GP:CAL21984.1;Name=CAL21984.1;Note=Similar to Escherichia coli 2'-5' RNA ligase LigT SW:LIGT_ECOLI (P37025) (175 aa) fasta scores: E(): 0%2C 60.0%25 id in 170 aa;gbkey=CDS;gene=ligT;product=putative 2'-5' RNA ligase;protein_id=CAL21984.1;transl_table=11
AL590842.1	EMBL	gene	3794274	3795011	.	+	.	ID=gene3341;Name=sfs1;gbkey=Gene;gene=sfs1;gene_biotype=protein_coding;gene_synonym=sfsA;locus_tag=YPO3396
AL590842.1	EMBL	CDS	3794274	3795011	.	+	0	ID=cds3294;Parent=gene3341;Dbxref=InterPro:IPR005224,NCBI_GP:CAL21985.1;Name=CAL21985.1;Note=Similar to Escherichia coli sugar fermentation stimulation protein A SfsA or Sfs1 SW:SFSA_ECOLI (P18273) (234 aa) fasta scores: E(): 0%2C 63.7%25 id in 234 aa%2C and to Vibrio cholerae sugar fermentation stimulation protein VC0597 TR:Q9KUC5 (EMBL:AE004144) (256 aa) fasta scores: E(): 0%2C 61.0%25 id in 231 aa;gbkey=CDS;gene=sfs1;inference=similar to sequence:INSDC:AE004144;product=sugar fermentation stimulation protein;protein_id=CAL21985.1;transl_table=11
AL590842.1	EMBL	gene	3795181	3795636	.	+	.	ID=gene3342;Name=dksA;gbkey=Gene;gene=dksA;gene_biotype=protein_coding;locus_tag=YPO3397
AL590842.1	EMBL	CDS	3795181	3795636	.	+	0	ID=cds3295;Parent=gene3342;Dbxref=GOA:Q0WBP9,InterPro:IPR000962,InterPro:IPR012784,InterPro:IPR020458,InterPro:IPR020460,UniProtKB/TrEMBL:Q0WBP9,NCBI_GP:CAL21986.1;Name=CAL21986.1;Note=Similar to Escherichia coli DnaK suppressor protein SW:DKSA_ECOLI (P18274) (151 aa) fasta scores: E(): 0%2C 94.7%25 id in 151 aa%2C and to Salmonella typhimurium DnaK suppressor protein SW:DKSA_SALTY (Q9ZIW3) (151 aa) fasta scores: E(): 0%2C 96.0%25 id in 151 aa;gbkey=CDS;gene=dksA;product=DnaK suppressor protein homologue;protein_id=CAL21986.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3795406	3795618	.	+	.	ID=id8189;Note=Pfam match to entry PF01258 zf_dskA_traR%2CProkaryotic dksA/traR C4-type zinc finger%2C score 127.00%2CE-value 3.6e-34;gbkey=misc_feature;gene=dksA;inference=protein motif:PF01258
AL590842.1	EMBL	sequence_feature	3795520	3795594	.	+	.	ID=id8190;Note=PS01102 Prokaryotic dksA/traR C4-type zinc finger.;gbkey=misc_feature;gene=dksA;inference=protein motif:ProSite:PS01102
AL590842.1	EMBL	gene	3795916	3796881	.	+	.	ID=gene3343;Name=yadB;gbkey=Gene;gene=yadB;gene_biotype=protein_coding;locus_tag=YPO3398
AL590842.1	EMBL	CDS	3795916	3796881	.	+	0	ID=cds3296;Parent=gene3343;Dbxref=GOA:Q8ZBL1,InterPro:IPR000924,InterPro:IPR014729,InterPro:IPR020058,InterPro:IPR022380,NCBI_GP:CAL21987.1;Name=CAL21987.1;Note=Similar to Escherichia coli hypothetical 33.6 kDa protein in pcnB-dksA intergenic region YadB SW:YADB_ECOLI (P27305) (298 aa) fasta scores: E(): 0%2C 71.2%25 id in 281 aa%2Cand to Vibrio cholerae glutamyl-tRNA synthetase-related protein Vc0595 TR:Q9KUC7 (EMBL:AE004144) (304 aa) fasta scores: E(): 0%2C 57.5%25 id in 294 aa;gbkey=CDS;gene=yadB;inference=similar to sequence:INSDC:AE004144;product=putative glutamyl-tRNA synthetase;protein_id=CAL21987.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3795988	3796656	.	+	.	ID=id8191;Note=Pfam match to entry PF00749 tRNA-synt_1c%2C tRNA synthetases class I (E and Q)%2C score 125.80%2C E-value 5.9e-34;gbkey=misc_feature;gene=yadB;inference=protein motif:PF00749
AL590842.1	EMBL	gene	3797123	3798445	.	+	.	ID=gene3344;Name=pcnB;gbkey=Gene;gene=pcnB;gene_biotype=protein_coding;locus_tag=YPO3399
AL590842.1	EMBL	CDS	3797123	3798445	.	+	0	ID=cds3297;Parent=gene3344;Dbxref=GOA:Q0WBP7,InterPro:IPR002646,InterPro:IPR010206,InterPro:IPR025866,UniProtKB/TrEMBL:Q0WBP7,NCBI_GP:CAL21988.1;Name=CAL21988.1;Note=Similar to Escherichia coli poly(A) polymerase PcnB SW:PCNB_ECOLI (P13685) (472 aa) fasta scores: E(): 0%2C 79.0%25 id in 439 aa%2C and to Vibrio cholerae poly(A) polymerase VC0594 TR:Q9KUC8 (EMBL:AE004144) (457 aa) fasta scores: E(): 0%2C 58.0%25 id in 433 aa;gbkey=CDS;gene=pcnB;inference=similar to sequence:INSDC:AE004144;product=poly(A) polymerase;protein_id=CAL21988.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3797396	3797902	.	+	.	ID=id8192;Note=Pfam match to entry PF01743 PolyA_pol%2C Poly A polymerase family%2C score 253.60%2C E-value 2.6e-72;gbkey=misc_feature;gene=pcnB;inference=protein motif:PF01743
AL590842.1	EMBL	gene	3798453	3798932	.	+	.	ID=gene3345;Name=folK;gbkey=Gene;gene=folK;gene_biotype=protein_coding;locus_tag=YPO3400
AL590842.1	EMBL	CDS	3798453	3798932	.	+	0	ID=cds3298;Parent=gene3345;Dbxref=GOA:Q7CKD7,InterPro:IPR000550,PDB:2QX0,UniProtKB/TrEMBL:Q7CKD7,NCBI_GP:CAL21989.1;Name=CAL21989.1;Note=Similar to Escherichia coli 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase FolK SW:HPPK_ECOLI (P26281) (158 aa) fasta scores: E(): 0%2C 63.2%25 id in 155 aa%2C and to Vibrio cholerae 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase Vc0593 TR:Q9KUC9 (EMBL:AE004144) (167 aa) fasta scores: E(): 0%2C 59.7%25 id in 159 aa;gbkey=CDS;gene=folK;inference=similar to sequence:INSDC:AE004144;product=2-amino-4-hydroxy-6-hydroxymethyldihydropteridin e pyrophosphokinase;protein_id=CAL21989.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3798459	3798851	.	+	.	ID=id8193;Note=Pfam match to entry PF01288 HPPK%2C7%2C8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)%2Cscore 249.40%2C E-value 1.6e-71;gbkey=misc_feature;gene=folK;inference=protein motif:PF01288
AL590842.1	EMBL	sequence_feature	3798717	3798752	.	+	.	ID=id8194;Note=PS00794 7%2C8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature.;gbkey=misc_feature;gene=folK;inference=protein motif:ProSite:PS00794
AL590842.1	EMBL	gene	3799198	3799998	.	+	.	ID=gene3346;Name=panB;gbkey=Gene;gene=panB;gene_biotype=protein_coding;locus_tag=YPO3401
AL590842.1	EMBL	CDS	3799198	3799998	.	+	0	ID=cds3299;Parent=gene3346;Dbxref=GOA:Q8ZBK8,InterPro:IPR003700,InterPro:IPR015813,NCBI_GP:CAL21990.1;Name=CAL21990.1;Note=Similar to Escherichia coli 3-methyl-2-oxobutanoate hydroxymethyltransferase PanB SW:PANB_ECOLI (P31057) (264 aa) fasta scores: E(): 0%2C 76.2%25 id in 265 aa%2C and to Vibrio cholerae 3-methyl-2-oxobutanoate hydroxymethyltransferase Vc0592 TR:Q9KUD0 (EMBL:AE004144) (264 aa) fasta scores: E(): 0%2C 68.8%25 id in 263 aa;gbkey=CDS;gene=panB;inference=similar to sequence:INSDC:AE004144;product=3-methyl-2-oxobutanoate hydroxymethyltransferase;protein_id=CAL21990.1;transl_table=11
AL590842.1	EMBL	gene	3800086	3800940	.	+	.	ID=gene3347;Name=panC;gbkey=Gene;gene=panC;gene_biotype=protein_coding;locus_tag=YPO3402
AL590842.1	EMBL	CDS	3800086	3800940	.	+	0	ID=cds3300;Parent=gene3347;Dbxref=GOA:Q8ZBK7,InterPro:IPR003721,InterPro:IPR014729,PDB:3Q10,PDB:3Q12,NCBI_GP:CAL21991.1;Name=CAL21991.1;Note=Similar to Escherichia coli pantoate--beta-alanine ligase PanC SW:PANC_ECOLI (P31663) (283 aa) fasta scores: E(): 0%2C 72.0%25 id in 282 aa%2C and to Vibrio cholerae pantoate--beta-alanine ligase Vc0591 TR:Q9KUD1 (EMBL:AE004144) (293 aa) fasta scores: E(): 0%2C 59.0%25 id in 283 aa;gbkey=CDS;gene=panC;inference=similar to sequence:INSDC:AE004144;product=pantoate--beta-alanine ligase;protein_id=CAL21991.1;transl_table=11
AL590842.1	EMBL	gene	3801351	3801731	.	+	.	ID=gene3348;Name=panD;gbkey=Gene;gene=panD;gene_biotype=protein_coding;locus_tag=YPO3403
AL590842.1	EMBL	CDS	3801351	3801731	.	+	0	ID=cds3301;Parent=gene3348;Dbxref=GOA:Q8ZBK6,InterPro:IPR003190,InterPro:IPR009010,NCBI_GP:CAL21992.1;Name=CAL21992.1;Note=Similar to Escherichia coli aspartate 1-decarboxylase precursor PanD SW:PAND_ECOLI (P31664) (126 aa) fasta scores: E(): 0%2C 78.6%25 id in 126 aa%2C and to Pseudomonas aeruginosa aspartate 1-decarboxylase precursor Pa4731 TR:AAG08117 (EMBL:AE004887) (126 aa) fasta scores: E(): 1.5e-27%2C 58.2%25 id in 122 aa;gbkey=CDS;gene=panD;inference=similar to sequence:INSDC:AE004887;product=aspartate 1-decarboxylase precursor;protein_id=CAL21992.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3801351	3801698	.	+	.	ID=id8195;Note=Pfam match to entry PF02261 Asp_decarbox%2C Aspartate decarboxylase%2C score 264.30%2C E-value 1.6e-75;gbkey=misc_feature;gene=panD;inference=protein motif:PF02261
AL590842.1	EMBL	gene	3801880	3803073	.	-	.	ID=gene3349;Name=YPO3404;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3404
AL590842.1	EMBL	CDS	3801880	3803073	.	-	0	ID=cds3302;Parent=gene3349;Dbxref=GOA:Q0WBP2,InterPro:IPR002509,InterPro:IPR011330,UniProtKB/TrEMBL:Q0WBP2,NCBI_GP:CAL21993.1;Name=CAL21993.1;Note=Similar to Escherichia coli hypothetical protein YadE SW:YADE_ECOLI (P31666) (409 aa) fasta scores: E(): 0%2C65.4%25 id in 382 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL21993.1;transl_table=11
AL590842.1	EMBL	gene	3803400	3804170	.	-	.	ID=gene3350;Name=yadH;gbkey=Gene;gene=yadH;gene_biotype=protein_coding;locus_tag=YPO3405
AL590842.1	EMBL	CDS	3803400	3804170	.	-	0	ID=cds3303;Parent=gene3350;Dbxref=GOA:Q7CKD8,InterPro:IPR000412,InterPro:IPR013525,UniProtKB/TrEMBL:Q7CKD8,NCBI_GP:CAL21994.1;Name=CAL21994.1;Note=Similar to Escherichia coli hypothetical 28.5 kDa protein in hpt-panD intergenic region YadH SW:YADH_ECOLI (P36880) (256 aa) fasta scores: E(): 0%2C 80.1%25 id in 256 aa%2Cand to Vibrio cholerae putative permease Vc0590 TR:Q9KUD2 (EMBL:AE004144) (256 aa) fasta scores: E(): 0%2C 66.0%25 id in 256 aa;gbkey=CDS;gene=yadH;inference=similar to sequence:INSDC:AE004144;product=putative ABC transporter%2C integral membrane protein;protein_id=CAL21994.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3803409	3804164	.	-	.	ID=id8196;Note=Pfam match to entry PF01061 ABC2_membrane%2C ABC-2 type transporter%2C score -22.30%2C E-value 5.8e-05;gbkey=misc_feature;gene=yadH;inference=protein motif:PF01061
AL590842.1	EMBL	sequence_feature	3803427	3803492	.	-	.	ID=id8197;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yadH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3803526	3803639	.	-	.	ID=id8198;Note=PS00890 ABC-2 type transport system integral membrane proteins signature.;gbkey=misc_feature;gene=yadH;inference=protein motif:ProSite:PS00890
AL590842.1	EMBL	sequence_feature	3803592	3803657	.	-	.	ID=id8199;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yadH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3803679	3803744	.	-	.	ID=id8200;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yadH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3803790	3803855	.	-	.	ID=id8201;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yadH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3803919	3803984	.	-	.	ID=id8202;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yadH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3804045	3804110	.	-	.	ID=id8203;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yadH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3804167	3805093	.	-	.	ID=gene3351;Name=yadG;gbkey=Gene;gene=yadG;gene_biotype=protein_coding;locus_tag=YPO3406
AL590842.1	EMBL	CDS	3804167	3805093	.	-	0	ID=cds3304;Parent=gene3351;Dbxref=GOA:Q7CKD9,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CKD9,NCBI_GP:CAL21995.1;Name=CAL21995.1;Note=Similar to Escherichia coli hypothetical ABC transporter ATP-binding protein YadG SW:YADG_ECOLI (P36879) (308 aa) fasta scores: E(): 0%2C 81.8%25 id in 308 aa%2C and to Vibrio cholerae ABC transporter ATP-binding protein Vc0589 TR:Q9KUD3 (EMBL:AE004144) (305 aa) fasta scores: E(): 0%2C71.4%25 id in 304 aa;gbkey=CDS;gene=yadG;inference=similar to sequence:INSDC:AE004144;product=putative ABC transporter%2C ATP-binding protein;protein_id=CAL21995.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3804458	3805003	.	-	.	ID=id8204;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 198.80%2C E-value 8.5e-56;gbkey=misc_feature;gene=yadG;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	3804641	3804685	.	-	.	ID=id8205;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=yadG;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	3804959	3804982	.	-	.	ID=id8206;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=yadG;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3805329	3805991	.	+	.	ID=gene3352;Name=yadF;gbkey=Gene;gene=yadF;gene_biotype=protein_coding;locus_tag=YPO3407
AL590842.1	EMBL	CDS	3805329	3805991	.	+	0	ID=cds3305;Parent=gene3352;Dbxref=GOA:Q0WBN9,InterPro:IPR001765,InterPro:IPR015892,UniProtKB/TrEMBL:Q0WBN9,NCBI_GP:CAL21996.1;Name=CAL21996.1;Note=Similar to Dictyostelium discoideum carbonic anhydrase CanA TR:Q94473 (EMBL:U66368) (276 aa) fasta scores: E(): 0%2C 64.8%25 id in 216 aa%2C and to Escherichia coli hypothetical 25.1 kDa protein in hpt-panD intergenic region YadF SW:YADF_ECOLI (P36857) (220 aa) fasta scores: E(): 0%2C73.1%25 id in 212 aa;gbkey=CDS;gene=yadF;inference=similar to sequence:INSDC:U66368;product=putative carbonic anhydrase;protein_id=CAL21996.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3805368	3805886	.	+	.	ID=id8207;Note=Pfam match to entry PF00484 Pro_CA%2C Prokaryotic-type carbonic anhydrases%2C score 257.70%2C E-value 9.2e-74;gbkey=misc_feature;gene=yadF;inference=protein motif:PF00484
AL590842.1	EMBL	sequence_feature	3805452	3805475	.	+	.	ID=id8208;Note=PS00704 Prokaryotic-type carbonic anhydrases signature 1.;gbkey=misc_feature;gene=yadF;inference=protein motif:ProSite:PS00704
AL590842.1	EMBL	sequence_feature	3805572	3805634	.	+	.	ID=id8209;Note=PS00705 Prokaryotic-type carbonic anhydrases signature 2.;gbkey=misc_feature;gene=yadF;inference=protein motif:ProSite:PS00705
AL590842.1	EMBL	gene	3806145	3806681	.	-	.	ID=gene3353;Name=b0125;gbkey=Gene;gene=b0125;gene_biotype=protein_coding;gene_synonym=hpt;locus_tag=YPO3408
AL590842.1	EMBL	CDS	3806145	3806681	.	-	0	ID=cds3306;Parent=gene3353;Dbxref=GOA:Q0WBN8,InterPro:IPR000836,InterPro:IPR005904,InterPro:IPR029057,UniProtKB/TrEMBL:Q0WBN8,NCBI_GP:CAL21997.1;Name=CAL21997.1;Note=Similar to Escherichia coli hypoxanthine phosphoribosyltransferase Hpt or B0125 SW:HPRT_ECOLI (P36766) (182 aa) fasta scores: E(): 0%2C 87.1%25 id in 178 aa%2Cand to Salmonella typhimurium hypoxanthine phosphoribosyltransferase Hpt SW:HPRT_SALTY (O33799) (178 aa) fasta scores: E(): 0%2C 87.6%25 id in 178 aa;gbkey=CDS;gene=b0125;product=hypoxanthine phosphoribosyltransferase;protein_id=CAL21997.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3806361	3806399	.	-	.	ID=id8210;Note=PS00103 Purine/pyrimidine phosphoribosyl transferases signature.;gbkey=misc_feature;gene=b0125;inference=protein motif:ProSite:PS00103
AL590842.1	EMBL	sequence_feature	3806217	3806687	.	-	.	ID=id8211;Note=Pfam match to entry PF00156 Pribosyltran%2CPhosphoribosyl transferase domain%2C score 107.30%2C E-value 3e-28;gbkey=misc_feature;inference=protein motif:PF00156
AL590842.1	EMBL	gene	3806901	3808502	.	-	.	ID=gene3354;Name=yacK;gbkey=Gene;gene=yacK;gene_biotype=protein_coding;locus_tag=YPO3409
AL590842.1	EMBL	CDS	3806901	3808502	.	-	0	ID=cds3307;Parent=gene3354;Dbxref=GOA:Q8ZBK0,InterPro:IPR001117,InterPro:IPR002355,InterPro:IPR006311,InterPro:IPR008972,InterPro:IPR011706,InterPro:IPR011707,NCBI_GP:CAL21998.1;Name=CAL21998.1;Note=Similar to Escherichia coli probable blue-copper protein YacK precursor SW:YACK_ECOLI (P36649) (516 aa) fasta scores: E(): 0%2C 65.0%25 id in 531 aa%2C and to Salmonella typhimurium SufI protein precursor SW:SUFI_SALTY (P40799) (470 aa) fasta scores: E(): 0%2C 32.2%25 id in 522 aa;gbkey=CDS;gene=yacK;product=putative exported protein;protein_id=CAL21998.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3806928	3806963	.	-	.	ID=id8212;Note=PS00080 Multicopper oxidases signature 2.;gbkey=misc_feature;gene=yacK;inference=protein motif:ProSite:PS00080
AL590842.1	EMBL	gene	3808819	3809166	.	+	.	ID=gene3355;Name=yacC;gbkey=Gene;gene=yacC;gene_biotype=protein_coding;locus_tag=YPO3410
AL590842.1	EMBL	CDS	3808819	3809166	.	+	0	ID=cds3308;Parent=gene3355;Dbxref=InterPro:IPR019114,UniProtKB/TrEMBL:Q7CKE0,NCBI_GP:CAL21999.1;Name=CAL21999.1;Note=Similar to Escherichia coli hypothetical 12.8 kDa protein in speE-gcd intergenic region precursor YacC SW:YACC_ECOLI (P23838) (115 aa) fasta scores: E(): 8.1e-33%2C71.2%25 id in 111 aa%2C and to Klebsiella pneumoniae pullulanase secretion protein PulS precursor SW:PULS_KLEPN (P20440) (125 aa) fasta scores: E(): 0.0052%2C 28.6%25 id in 105 aa%2C and to Erwinia chrysanthemi OutS protein precursor SW:OUTS_ERWCH (Q01567) (133 aa) fasta scores: E(): 0.0055%2C31.3%25 id in 96 aa;gbkey=CDS;gene=yacC;product=putative exported protein;protein_id=CAL21999.1;transl_table=11
AL590842.1	EMBL	gene	3809283	3810173	.	+	.	ID=gene3356;Name=speE;gbkey=Gene;gene=speE;gene_biotype=protein_coding;locus_tag=YPO3411
AL590842.1	EMBL	CDS	3809283	3810173	.	+	0	ID=cds3309;Parent=gene3356;Dbxref=GOA:Q8ZBJ8,InterPro:IPR001045,InterPro:IPR029063,NCBI_GP:CAL22000.1;Name=CAL22000.1;Note=Similar to Escherichia coli spermidine synthase SpeE SW:SPEE_ECOLI (P09158) (287 aa) fasta scores: E(): 0%2C 80.4%25 id in 286 aa%2C and to Pseudomonas aeruginosa spermidine synthase SpeE or Pa1687 SW:SPEE_PSEAE (Q9X6R0) (286 aa) fasta scores: E(): 0%2C 62.5%25 id in 277 aa;gbkey=CDS;gene=speE;product=spermidine synthase;protein_id=CAL22000.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3809298	3810029	.	+	.	ID=id8213;Note=Pfam match to entry PF01564 Spermine_synth%2CSpermine/spermidine synthase%2C score 422.80%2C E-value 3.1e-123;gbkey=misc_feature;gene=speE;inference=protein motif:PF01564
AL590842.1	EMBL	sequence_feature	3809523	3809564	.	+	.	ID=id8214;Note=PS01330 Spermidine/spermine synthases family signature.;gbkey=misc_feature;gene=speE;inference=protein motif:ProSite:PS01330
AL590842.1	EMBL	gene	3810251	3811045	.	+	.	ID=gene3357;Name=speD;gbkey=Gene;gene=speD;gene_biotype=protein_coding;locus_tag=YPO3412
AL590842.1	EMBL	CDS	3810251	3811045	.	+	0	ID=cds3310;Parent=gene3357;Dbxref=GOA:Q8ZBJ7,InterPro:IPR003826,InterPro:IPR009165,InterPro:IPR016067,NCBI_GP:CAL22001.1;Name=CAL22001.1;Note=Similar to Escherichia coli S-adenosylmethionine decarboxylase proenzyme SpeD SW:DCAM_ECOLI (P09159) (264 aa) fasta scores: E(): 0%2C 85.6%25 id in 264 aa%2C and to Pseudomonas aeruginosa S-adenosylmethionine decarboxylase proenzyme Sped or Pa0654 TR:AAG04043 (EMBL:AE004500) (264 aa) fasta scores: E(): 0%2C 70.9%25 id in 261 aa;gbkey=CDS;gene=speD;inference=similar to sequence:INSDC:AE004500;product=S-adenosylmethionine decarboxylase proenzyme;protein_id=CAL22001.1;transl_table=11
AL590842.1	EMBL	gene	3811483	3812391	.	+	.	ID=gene3358;Name=yddG;gbkey=Gene;gene=yddG;gene_biotype=protein_coding;locus_tag=YPO3413
AL590842.1	EMBL	CDS	3811483	3812391	.	+	0	ID=cds3311;Parent=gene3358;Dbxref=GOA:Q7CKE1,InterPro:IPR000620,UniProtKB/TrEMBL:Q7CKE1,NCBI_GP:CAL22002.1;Name=CAL22002.1;Note=Similar to Escherichia coli hypothetical 29.4 kDa protein in narU-fdnG intergenic region YddG SW:YDDG_ECOLI (P46136) (274 aa) fasta scores: E(): 0%2C 39.9%25 id in 278 aa%2Cand to Vibrio cholerae hypothetical protein Vca0835 TR:Q9KLB1 (EMBL:AE004411) (328 aa) fasta scores: E(): 0%2C41.0%25 id in 293 aa;gbkey=CDS;gene=yddG;inference=similar to sequence:INSDC:AE004411;product=putative membrane protein;protein_id=CAL22002.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3811501	3811554	.	+	.	ID=id8215;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yddG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3811567	3811635	.	+	.	ID=id8216;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yddG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3811669	3811737	.	+	.	ID=id8217;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yddG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3811750	3811818	.	+	.	ID=id8218;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yddG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3811837	3811890	.	+	.	ID=id8219;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yddG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3811948	3812007	.	+	.	ID=id8220;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yddG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3811978	3812364	.	+	.	ID=id8221;Note=Pfam match to entry PF00892 DUF6%2C Integral membrane protein DUF6%2C score 37.40%2C E-value 3.4e-07;gbkey=misc_feature;gene=yddG;inference=protein motif:PF00892
AL590842.1	EMBL	sequence_feature	3812026	3812094	.	+	.	ID=id8222;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yddG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3812122	3812190	.	+	.	ID=id8223;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yddG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3812224	3812292	.	+	.	ID=id8224;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yddG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3812305	3812364	.	+	.	ID=id8225;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yddG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3812502	3812861	.	-	.	ID=gene3359;Name=YPO3414;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3414
AL590842.1	EMBL	CDS	3812502	3812861	.	-	0	ID=cds3312;Parent=gene3359;Dbxref=InterPro:IPR008249,NCBI_GP:CAL22003.1;Name=CAL22003.1;Note=Similar to Escherichia coli hypothetical protein YacL SW:YACL_ECOLI (P45567) (120 aa) fasta scores: E(): 0%2C70.6%25 id in 119 aa%2C and to Pasteurella multocida hypothetical protein PM0457 TR:AAK02541 (EMBL:AE006081) (118 aa) fasta scores: E(): 4.4e-14%2C 41.7%25 id in 120 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE006081;product=conserved hypothetical protein;protein_id=CAL22003.1;transl_table=11
AL590842.1	EMBL	gene	3813160	3815757	.	-	.	ID=gene3360;Name=acnB;gbkey=Gene;gene=acnB;gene_biotype=protein_coding;locus_tag=YPO3415
AL590842.1	EMBL	CDS	3813160	3815757	.	-	0	ID=cds3313;Parent=gene3360;Dbxref=GOA:Q7CKE2,InterPro:IPR001030,InterPro:IPR004406,InterPro:IPR015928,InterPro:IPR015929,InterPro:IPR015931,InterPro:IPR015932,InterPro:IPR015933,InterPro:IPR015937,InterPro:IPR018136,UniProtKB/TrEMBL:Q7CKE2,NCBI_GP:CAL22004.1;Name=CAL22004.1;Note=Similar to Escherichia coli aconitate hydratase 2 AcnB SW:ACO2_ECOLI (P36683) (865 aa) fasta scores: E(): 0%2C90.3%25 id in 865 aa%2C and to Vibrio cholerae aconitate hydratase 2 Vc0604 TR:Q9KUB8 (EMBL:AE004145) (865 aa) fasta scores: E(): 0%2C 81.2%25 id in 862 aa;gbkey=CDS;gene=acnB;inference=similar to sequence:INSDC:AE004145;product=aconitate hydratase 2;protein_id=CAL22004.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3813304	3813657	.	-	.	ID=id8226;Note=Pfam match to entry PF00330 aconitase%2C Aconitase family (aconitate hydratase)%2C score 34.50%2C E-value 7e-10;gbkey=misc_feature;gene=acnB;inference=protein motif:PF00330
AL590842.1	EMBL	sequence_feature	3813436	3813477	.	-	.	ID=id8227;Note=PS01244 Aconitase family signature 2.;gbkey=misc_feature;gene=acnB;inference=protein motif:ProSite:PS01244
AL590842.1	EMBL	sequence_feature	3813601	3813654	.	-	.	ID=id8228;Note=PS00450 Aconitase family signature 1.;gbkey=misc_feature;gene=acnB;inference=protein motif:ProSite:PS00450
AL590842.1	EMBL	repeat_region	3816219	3816930	.	-	.	ID=id8229;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	3816327	3816785	.	-	.	ID=gene3361;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO3416
AL590842.1	EMBL	CDS	3816327	3816785	.	-	0	ID=cds3314;Parent=gene3361;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL22005.1;Name=CAL22005.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase TnpTR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL22005.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3816420	3816731	.	-	.	ID=id8230;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	3817028	3818455	.	-	.	ID=gene3362;Name=lpd;gbkey=Gene;gene=lpd;gene_biotype=protein_coding;gene_synonym=lpdA;locus_tag=YPO3417
AL590842.1	EMBL	CDS	3817028	3818455	.	-	0	ID=cds3315;Parent=gene3362;Dbxref=GOA:Q7CKE4,InterPro:IPR001327,InterPro:IPR004099,InterPro:IPR006258,InterPro:IPR012999,InterPro:IPR013027,InterPro:IPR016156,InterPro:IPR023753,UniProtKB/TrEMBL:Q7CKE4,NCBI_GP:CAL22006.1;Name=CAL22006.1;Note=Similar to Escherichia coli dihydrolipoamide dehydrogenase LpdA or Lpd SW:DLDH_ECOLI (P00391) (473 aa) fasta scores: E(): 0%2C 93.9%25 id in 473 aa%2C and to Vibrio cholerae pyruvate dehydrogenase%2C E3 component%2C lipoamide dehydrogenase Vc2412 TR:Q9KPF6 (EMBL:AE004311) (475 aa) fasta scores: E(): 0%2C 86.5%25 id in 474 aa;gbkey=CDS;gene=lpd;inference=similar to sequence:INSDC:AE004311;product=dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase complex;protein_id=CAL22006.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3817511	3818428	.	-	.	ID=id8231;Note=Pfam match to entry PF00070 pyr_redox%2C Pyridine nucleotide-disulphide oxidoreductase%2C score 319.50%2C E-value 1.3e-93;gbkey=misc_feature;gene=lpd;inference=protein motif:PF00070
AL590842.1	EMBL	sequence_feature	3818297	3818329	.	-	.	ID=id8232;Note=PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site.;gbkey=misc_feature;gene=lpd;inference=protein motif:ProSite:PS00076
AL590842.1	EMBL	gene	3818758	3820287	.	-	.	ID=gene3363;Name=aceF;gbkey=Gene;gene=aceF;gene_biotype=protein_coding;locus_tag=YPO3418
AL590842.1	EMBL	CDS	3818758	3820287	.	-	0	ID=cds3316;Parent=gene3363;Dbxref=GOA:Q7CKE5,InterPro:IPR000089,InterPro:IPR001078,InterPro:IPR003016,InterPro:IPR004167,InterPro:IPR006256,InterPro:IPR011053,InterPro:IPR023213,UniProtKB/TrEMBL:Q7CKE5,NCBI_GP:CAL22007.1;Name=CAL22007.1;Note=Similar to Escherichia coli dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex AceF SW:ODP2_ECOLI (P06959) (629 aa) fasta scores: E(): 0%2C 79.4%25 id in 525 aa%2C and to Haemophilus influenzae dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex AceF or Hi1232 SW:ODP2_HAEIN (P45118) (567 aa) fasta scores: E(): 0%2C 65.8%25 id in 567 aa;gbkey=CDS;gene=aceF;product=dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex;protein_id=CAL22007.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3818761	3819426	.	-	.	ID=id8233;Note=Pfam match to entry PF00198 2-oxoacid_dh%2C 2-oxo acid dehydrogenases acyltransferase (catalytic domain)%2C score 336.10%2C E-value 3.8e-97;gbkey=misc_feature;gene=aceF;inference=protein motif:PF00198
AL590842.1	EMBL	sequence_feature	3819760	3819975	.	-	.	ID=id8234;Note=Pfam match to entry PF00364 biotin_lipoyl%2CBiotin-requiring enzymes%2C score 94.10%2C E-value 2.7e-24;gbkey=misc_feature;gene=aceF;inference=protein motif:PF00364
AL590842.1	EMBL	sequence_feature	3819820	3819909	.	-	.	ID=id8235;Note=PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.;gbkey=misc_feature;gene=aceF;inference=protein motif:ProSite:PS00189
AL590842.1	EMBL	sequence_feature	3820066	3820281	.	-	.	ID=id8236;Note=Pfam match to entry PF00364 biotin_lipoyl%2CBiotin-requiring enzymes%2C score 101.20%2C E-value 2.1e-26;gbkey=misc_feature;gene=aceF;inference=protein motif:PF00364
AL590842.1	EMBL	sequence_feature	3820126	3820215	.	-	.	ID=id8237;Note=PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.;gbkey=misc_feature;gene=aceF;inference=protein motif:ProSite:PS00189
AL590842.1	EMBL	gene	3820301	3822964	.	-	.	ID=gene3364;Name=aceE;gbkey=Gene;gene=aceE;gene_biotype=protein_coding;locus_tag=YPO3419
AL590842.1	EMBL	CDS	3820301	3822964	.	-	0	ID=cds3317;Parent=gene3364;Dbxref=GOA:Q7CKE6,InterPro:IPR004660,InterPro:IPR005474,InterPro:IPR009014,InterPro:IPR029061,UniProtKB/TrEMBL:Q7CKE6,NCBI_GP:CAL22008.1;Name=CAL22008.1;Note=Similar to Escherichia coli pyruvate dehydrogenase E1 component AceE SW:ODP1_ECOLI (P06958) (886 aa) fasta scores: E(): 0%2C 89.2%25 id in 886 aa%2C and to Vibrio cholerae pyruvate dehydrogenase E1 component Vc2414 TR:Q9KPF4 (EMBL:AE004311) (886 aa) fasta scores: E(): 0%2C 72.8%25 id in 889 aa;gbkey=CDS;gene=aceE;inference=similar to sequence:INSDC:AE004311;product=pyruvate dehydrogenase E1 component;protein_id=CAL22008.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3821777	3821878	.	-	.	ID=id8238;Note=Pfam match to entry PF00456 transketolase%2CTransketolase%2C score 20.10%2C E-value 0.00016;gbkey=misc_feature;gene=aceE;inference=protein motif:PF00456
AL590842.1	EMBL	gene	3823160	3823924	.	-	.	ID=gene3365;Name=aceC;gbkey=Gene;gene=aceC;gene_biotype=protein_coding;gene_synonym=genA,pdhR;locus_tag=YPO3420
AL590842.1	EMBL	CDS	3823160	3823924	.	-	0	ID=cds3318;Parent=gene3365;Dbxref=GOA:Q0WBM6,InterPro:IPR000524,InterPro:IPR008920,InterPro:IPR011711,InterPro:IPR011991,UniProtKB/TrEMBL:Q0WBM6,NCBI_GP:CAL22009.1;Name=CAL22009.1;Note=Similar to Escherichia coli pyruvate dehydrogenase complex repressor PdhR or GenA or AceC SW:PDHR_ECOLI (P06957) (254 aa) fasta scores: E(): 0%2C 86.2%25 id in 253 aa%2Cand to Salmonella typhimurium PdhR protein TR:Q9L4H9 (EMBL:AJ242516) (254 aa) fasta scores: E(): 0%2C 85.4%25 id in 253 aa;gbkey=CDS;gene=aceC;inference=similar to sequence:INSDC:AJ242516;product=pyruvate dehydrogenase complex repressor;protein_id=CAL22009.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3823703	3823882	.	-	.	ID=id8239;Note=Pfam match to entry PF00392 gntR%2C Bacterial regulatory proteins%2C gntR family%2C score 105.30%2C E-value 5.3e-31;gbkey=misc_feature;gene=aceC;inference=protein motif:PF00392
AL590842.1	EMBL	sequence_feature	3823751	3823825	.	-	.	ID=id8240;Note=PS00043 Bacterial regulatory proteins%2C gntR family signature.;gbkey=misc_feature;gene=aceC;inference=protein motif:ProSite:PS00043
AL590842.1	EMBL	sequence_feature	3823757	3823822	.	-	.	ID=id8241;Note=Predicted helix-turn-helix motif with score 1517 (+4.35 SD) at aa 35-56%2C sequence LPERELAKQFDVSRPSLREAIQ;gbkey=misc_feature;gene=aceC
AL590842.1	EMBL	gene	3824787	3826184	.	+	.	ID=gene3366;Name=aroP;gbkey=Gene;gene=aroP;gene_biotype=protein_coding;locus_tag=YPO3421
AL590842.1	EMBL	CDS	3824787	3826184	.	+	0	ID=cds3319;Parent=gene3366;Dbxref=GOA:Q0WBM5,InterPro:IPR002293,InterPro:IPR004840,InterPro:IPR004841,UniProtKB/TrEMBL:Q0WBM5,NCBI_GP:CAL22010.1;Name=CAL22010.1;Note=Similar to Escherichia coli aromatic amino acid transport protein AroP SW:AROP_ECOLI (P15993) (457 aa) fasta scores: E(): 0%2C 75.6%25 id in 451 aa%2C and to Salmonella typhimurium AroP protein TR:Q9L4I0 (EMBL:AJ242516) (457 aa) fasta scores: E(): 0%2C 74.9%25 id in 451 aa. Similar to YPO1743 (77.8%25 identity in 445 aa overlap);gbkey=CDS;gene=aroP;inference=similar to sequence:INSDC:AJ242516;product=aromatic amino acid transport protein;protein_id=CAL22010.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3824814	3826130	.	+	.	ID=id8242;Note=Pfam match to entry PF00324 aa_permeases%2C Amino acid permease%2C score 679.10%2C E-value 2.3e-200;gbkey=misc_feature;gene=aroP;inference=protein motif:PF00324
AL590842.1	EMBL	sequence_feature	3824847	3824906	.	+	.	ID=id8243;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aroP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3824913	3825005	.	+	.	ID=id8244;Note=PS00218 Amino acid permeases signature.;gbkey=misc_feature;gene=aroP;inference=protein motif:ProSite:PS00218
AL590842.1	EMBL	sequence_feature	3824916	3824969	.	+	.	ID=id8245;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aroP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3825078	3825146	.	+	.	ID=id8246;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aroP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3825156	3825224	.	+	.	ID=id8247;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aroP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3825243	3825311	.	+	.	ID=id8248;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aroP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3825378	3825446	.	+	.	ID=id8249;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aroP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3825504	3825572	.	+	.	ID=id8250;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aroP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3825630	3825698	.	+	.	ID=id8251;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aroP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3825777	3825845	.	+	.	ID=id8252;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aroP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3825855	3825923	.	+	.	ID=id8253;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aroP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3825981	3826049	.	+	.	ID=id8254;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aroP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3826059	3826121	.	+	.	ID=id8255;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=aroP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3826602	3827456	.	-	.	ID=gene3367;Name=ampE;gbkey=Gene;gene=ampE;gene_biotype=protein_coding;locus_tag=YPO3422
AL590842.1	EMBL	CDS	3826602	3827456	.	-	0	ID=cds3320;Parent=gene3367;Dbxref=UniProtKB/TrEMBL:Q7CKE7,NCBI_GP:CAL22011.1;Name=CAL22011.1;Note=Similar to Escherichia coli AmpE protein SW:AMPE_ECOLI (P13017) (284 aa) fasta scores: E(): 0%2C 64.4%25 id in 284 aa%2C and to Salmonella typhimurium AmpE protein TR:Q9L4I3 (EMBL:AJ242516) (284 aa) fasta scores: E(): 0%2C63.0%25 id in 284 aa;gbkey=CDS;gene=ampE;inference=similar to sequence:INSDC:AJ242516;product=putative membrane-bound sensory transducer in beta-lactamase regulation;protein_id=CAL22011.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3826608	3826658	.	-	.	ID=id8256;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=ampE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3826953	3827018	.	-	.	ID=id8257;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=ampE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3827196	3827261	.	-	.	ID=id8258;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=ampE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3827283	3827339	.	-	.	ID=id8259;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=ampE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3827746	3828297	.	-	.	ID=gene3368;Name=ampD;gbkey=Gene;gene=ampD;gene_biotype=protein_coding;locus_tag=YPO3423
AL590842.1	EMBL	CDS	3827746	3828297	.	-	0	ID=cds3321;Parent=gene3368;Dbxref=GOA:Q7CKE8,InterPro:IPR002502,UniProtKB/TrEMBL:Q7CKE8,NCBI_GP:CAL22012.1;Name=CAL22012.1;Note=Similar to Escherichia coli AmpD protein SW:AMPD_ECOLI (P13016) (183 aa) fasta scores: E(): 0%2C 67.8%25 id in 171 aa%2C and to Salmonella typhimurium AmpD protein TR:Q9L4I4 (EMBL:AJ242516) (187 aa) fasta scores: E(): 0%2C67.8%25 id in 171 aa;gbkey=CDS;gene=ampD;inference=similar to sequence:INSDC:AJ242516;product=putative signalling protein in beta-lactamase regulation;protein_id=CAL22012.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3827761	3828198	.	-	.	ID=id8260;Note=Pfam match to entry PF01510 Amidase_2%2CN-acetylmuramoyl-L-alanine amidase%2C score 0.00%2C E-value 0.0022;gbkey=misc_feature;gene=ampD;inference=protein motif:PF01510
AL590842.1	EMBL	gene	3828410	3829318	.	+	.	ID=gene3369;Name=nadC;gbkey=Gene;gene=nadC;gene_biotype=protein_coding;locus_tag=YPO3424
AL590842.1	EMBL	CDS	3828410	3829318	.	+	0	ID=cds3322;Parent=gene3369;Dbxref=GOA:Q0WBM2,InterPro:IPR002638,InterPro:IPR004393,InterPro:IPR013785,InterPro:IPR022412,InterPro:IPR027277,UniProtKB/TrEMBL:Q0WBM2,NCBI_GP:CAL22013.1;Name=CAL22013.1;Note=Similar to Escherichia coli nicotinate-nucleotide pyrophosphorylase [carboxylating] NadC SW:NADC_ECOLI (P30011) (296 aa) fasta scores: E(): 0%2C 68.2%25 id in 302 aa%2Cand to Salmonella typhimurium nicotinate-nucleotide pyrophosphorylase [carboxylating] NadC SW:NADC_SALTY (P30012) (296 aa) fasta scores: E(): 0%2C 72.8%25 id in 301 aa;gbkey=CDS;gene=nadC;product=nicotinate-nucleotide pyrophosphorylase [carboxylating];protein_id=CAL22013.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3828527	3829312	.	+	.	ID=id8261;Note=Pfam match to entry PF01729 QRPTase%2C Quinolinate phosphoribosyl transferase%2C score 447.50%2C E-value 1.2e-130;gbkey=misc_feature;gene=nadC;inference=protein motif:PF01729
AL590842.1	EMBL	gene	3829521	3829985	.	+	.	ID=gene3370;Name=ppdD;gbkey=Gene;gene=ppdD;gene_biotype=protein_coding;locus_tag=YPO3425
AL590842.1	EMBL	CDS	3829521	3829985	.	+	0	ID=cds3323;Parent=gene3370;Dbxref=InterPro:IPR012902,UniProtKB/TrEMBL:Q7CKE9,NCBI_GP:CAL22014.1;Name=CAL22014.1;Note=Similar to Escherichia coli prepilin peptidase dependent protein D precursor PpdD SW:PPDD_ECOLI (P36647) (146 aa) fasta scores: E(): 7.2e-32%2C 56.7%25 id in 141 aa%2Cand to Salmonella typhimurium PpdD protein TR:Q9L4I6 (EMBL:AJ242516) (145 aa) fasta scores: E(): 4.2e-30%2C 55.0%25 id in 140 aa;gbkey=CDS;gene=ppdD;inference=similar to sequence:INSDC:AJ242516;product=putative prepilin peptidase dependent protein D precursor;protein_id=CAL22014.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3829551	3829613	.	+	.	ID=id8262;Note=PS00409 Prokaryotic N-terminal methylation site.;gbkey=misc_feature;gene=ppdD;inference=protein motif:ProSite:PS00409
AL590842.1	EMBL	sequence_feature	3829557	3829640	.	+	.	ID=id8263;Note=Pfam match to entry PF00114 pilin%2C Pilin (bacterial filament)%2C score 25.70%2C E-value 1e-06;gbkey=misc_feature;gene=ppdD;inference=protein motif:PF00114
AL590842.1	EMBL	sequence_feature	3829557	3829625	.	+	.	ID=id8264;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=ppdD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3829978	3831516	.	+	.	ID=gene3371;Name=hofB;gbkey=Gene;gene=hofB;gene_biotype=protein_coding;gene_synonym=hopB;locus_tag=YPO3426
AL590842.1	EMBL	CDS	3829978	3831516	.	+	0	ID=cds3324;Parent=gene3371;Dbxref=GOA:Q0WBM0,InterPro:IPR001482,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WBM0,NCBI_GP:CAL22015.1;Name=CAL22015.1;Note=Similar to Escherichia coli protein transport protein HofB or HopB SW:HOFB_ECOLI (P36645) (461 aa) fasta scores: E(): 0%2C 45.3%25 id in 490 aa%2C and to Aeromonas salmonicida type IV pilus assembly protein TapB TR:O85279 (EMBL:AF059248) (568 aa) fasta scores: E(): 0%2C 43.5%25 id in 494 aa;gbkey=CDS;gene=hofB;inference=similar to sequence:INSDC:AF059248;product=putative type II secretion system protein;protein_id=CAL22015.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3830056	3830079	.	+	.	ID=id8265;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=hofB;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3830350	3831192	.	+	.	ID=id8266;Note=Pfam match to entry PF00437 GSPII_E%2C Bacterial type II secretion system protein%2C score 561.60%2C E-value 2.1e-166;gbkey=misc_feature;gene=hofB;inference=protein motif:PF00437
AL590842.1	EMBL	sequence_feature	3830782	3830805	.	+	.	ID=id8267;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=hofB;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3830959	3831003	.	+	.	ID=id8268;Note=PS00662 Bacterial type II secretion system protein E signature.;gbkey=misc_feature;gene=hofB;inference=protein motif:ProSite:PS00662
AL590842.1	EMBL	gene	3831513	3832712	.	+	.	ID=gene3372;Name=hofC;gbkey=Gene;gene=hofC;gene_biotype=protein_coding;gene_synonym=hopC;locus_tag=YPO3427
AL590842.1	EMBL	CDS	3831513	3832712	.	+	0	ID=cds3325;Parent=gene3372;Dbxref=GOA:Q7CKF0,InterPro:IPR001992,InterPro:IPR003004,InterPro:IPR018076,UniProtKB/TrEMBL:Q7CKF0,NCBI_GP:CAL22016.1;Name=CAL22016.1;Note=Similar to Escherichia coli protein transport protein HofC or HopC SW:HOFC_ECOLI (P36646) (400 aa) fasta scores: E(): 0%2C 38.9%25 id in 398 aa%2C and to Pseudomonas aeruginosa fimbrial assembly protein PilC SW:PILC_PSEAE (P22609) (406 aa) fasta scores: E(): 0%2C 34.2%25 id in 401 aa;gbkey=CDS;gene=hofC;inference=protein motif:TMHMM:2.0;product=putative type II secretion system protein;protein_id=CAL22016.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3831705	3832694	.	+	.	ID=id8269;Note=Pfam match to entry PF00482 GSPII_F%2C Bacterial type II secretion system protein F domain%2C score 367.00%2C E-value 2e-106;gbkey=misc_feature;gene=hofC;inference=protein motif:PF00482
AL590842.1	EMBL	sequence_feature	3831987	3832073	.	+	.	ID=id8270;Note=PS00874 Bacterial type II secretion system protein F signature.;gbkey=misc_feature;gene=hofC;inference=protein motif:ProSite:PS00874
AL590842.1	EMBL	sequence_feature	3832014	3832082	.	+	.	ID=id8271;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=hofC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3832146	3832214	.	+	.	ID=id8272;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=hofC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3832620	3832688	.	+	.	ID=id8273;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=hofC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3833139	3834182	.	-	.	ID=gene3373;Name=guaC;gbkey=Gene;gene=guaC;gene_biotype=protein_coding;locus_tag=YPO3428
AL590842.1	EMBL	CDS	3833139	3834182	.	-	0	ID=cds3326;Parent=gene3373;Dbxref=GOA:Q8ZBI2,InterPro:IPR001093,InterPro:IPR005993,InterPro:IPR013785,InterPro:IPR015875,NCBI_GP:CAL22017.1;Name=CAL22017.1;Note=Similar to Escherichia coli GMP reductase GuaC SW:GUAC_ECOLI (P15344) (346 aa) fasta scores: E(): 0%2C 84.3%25 id in 344 aa%2C and to Vibrio cholerae GMP reductase Vca0197 TR:Q9KMW9 (EMBL:AE004359) (347 aa) fasta scores: E(): 0%2C74.1%25 id in 347 aa;gbkey=CDS;gene=guaC;inference=similar to sequence:INSDC:AE004359;product=GMP reductase;protein_id=CAL22017.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3833190	3833834	.	-	.	ID=id8274;Note=Pfam match to entry PF00478 IMPDH_C%2C IMP dehydrogenase / GMP reductase C terminus%2C score 351.50%2CE-value 8.8e-102;gbkey=misc_feature;gene=guaC;inference=protein motif:PF00478
AL590842.1	EMBL	sequence_feature	3833619	3833657	.	-	.	ID=id8275;Note=PS00487 IMP dehydrogenase / GMP reductase signature.;gbkey=misc_feature;gene=guaC;inference=protein motif:ProSite:PS00487
AL590842.1	EMBL	sequence_feature	3833901	3834173	.	-	.	ID=id8276;Note=Pfam match to entry PF01574 IMPDH_N%2C IMP dehydrogenase / GMP reductase N terminus%2C score 4.70%2CE-value 0.00033;gbkey=misc_feature;gene=guaC;inference=protein motif:PF01574
AL590842.1	EMBL	gene	3834223	3834468	.	+	.	ID=gene3374;Name=YPO3429;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3429
AL590842.1	EMBL	CDS	3834223	3834468	.	+	0	ID=cds3327;Parent=gene3374;Dbxref=UniProtKB/TrEMBL:Q74XW8,NCBI_GP:CAL22018.1;Name=CAL22018.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22018.1;transl_table=11
AL590842.1	EMBL	gene	3834478	3835098	.	+	.	ID=gene3375;Name=YPO3430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3430
AL590842.1	EMBL	CDS	3834478	3835098	.	+	0	ID=cds3328;Parent=gene3375;Dbxref=GOA:Q8ZBI0,InterPro:IPR001977,InterPro:IPR027417,NCBI_GP:CAL22019.1;Name=CAL22019.1;Note=Similar to Escherichia coli protein YacE SW:YACE_ECOLI (P36679) (206 aa) fasta scores: E(): 0%2C 64.6%25 id in 198 aa%2C and to Vibrio cholerae hypothetical protein VC2427 TR:Q9KPE3 (EMBL:AE004312) (213 aa) fasta scores: E(): 0%2C 56.6%25 id in 198 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004312;product=conserved hypothetical protein;protein_id=CAL22019.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3834484	3835017	.	+	.	ID=id8277;Note=Pfam match to entry PF01121 UPF0038%2C Uncharacterized protein family UPF0038%2C score 340.30%2C E-value 2.1e-98;gbkey=misc_feature;inference=protein motif:PF01121
AL590842.1	EMBL	sequence_feature	3834502	3834525	.	+	.	ID=id8278;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3834664	3834753	.	+	.	ID=id8279;Note=PS01294 Uncharacterized protein family UPF0038 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01294
AL590842.1	EMBL	gene	3835095	3835847	.	+	.	ID=gene3376;Name=YPO3431;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3431
AL590842.1	EMBL	CDS	3835095	3835847	.	+	0	ID=cds3329;Parent=gene3376;Dbxref=GOA:Q8ZBH9,InterPro:IPR009777,InterPro:IPR027462,NCBI_GP:CAL22020.1;Name=CAL22020.1;Note=Similar to Escherichia coli hypothetical protein YacF SW:YACF_ECOLI (P36680) (247 aa) fasta scores: E(): 0%2C67.6%25 id in 247 aa%2C and to Vibrio cholerae hypothetical protein VC2428 TR:Q9KPE2 (EMBL:AE004312) (246 aa) fasta scores: E(): 0%2C 41.3%25 id in 247 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004312;product=conserved hypothetical protein;protein_id=CAL22020.1;transl_table=11
AL590842.1	EMBL	gene	3836033	3836239	.	+	.	ID=gene3377;Name=YPO3432;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3432
AL590842.1	EMBL	CDS	3836033	3836239	.	+	0	ID=cds3330;Parent=gene3377;Dbxref=GOA:Q8ZBH8,InterPro:IPR005584,InterPro:IPR013088,NCBI_GP:CAL22021.1;Name=CAL22021.1;Note=Similar to Escherichia coli hypothetical protein YacG SW:YACG_ECOLI (P36681) (50 aa) fasta scores: E(): 3e-14%2C 78.7%25 id in 47 aa%2C and to Vibrio cholerae hypothetical protein VC2429 TR:Q9KPE1 (EMBL:AE004312) (65 aa) fasta scores: E(): 1.5e-15%2C 61.9%25 id in 63 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004312;product=conserved hypothetical protein;protein_id=CAL22021.1;transl_table=11
AL590842.1	EMBL	repeat_region	3836321	3836915	.	-	.	ID=id8280;Note=A member of the IS1541 elements carrying an 'A' at nucleotide position 315.%3B~Truncated insertion sequence:IS200-like;gbkey=repeat_region
AL590842.1	EMBL	gene	3836429	3836887	.	-	.	ID=gene3378;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO3433
AL590842.1	EMBL	CDS	3836429	3836887	.	-	0	ID=cds3331;Parent=gene3378;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL22022.1;Name=CAL22022.1;Note=Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL22022.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3836522	3836833	.	-	.	ID=id8281;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	repeat_region	3836912	3838865	.	+	.	ID=id8282;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	3836912	3836939	.	+	.	ID=id8283;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	3836998	3838020	.	+	.	ID=gene3379;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO3434
AL590842.1	EMBL	CDS	3836998	3838020	.	+	0	ID=cds3332;Parent=gene3379;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL22023.1;Name=CAL22023.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL22023.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3837022	3837105	.	+	.	ID=id8284;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	sequence_feature	3837049	3837114	.	+	.	ID=id8285;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	3837343	3837876	.	+	.	ID=id8286;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	gene	3838017	3838799	.	+	.	ID=gene3380;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO3435
AL590842.1	EMBL	CDS	3838017	3838799	.	+	0	ID=cds3333;Parent=gene3380;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL22024.1;Name=CAL22024.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL22024.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3838185	3838724	.	+	.	ID=id8287;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	3838344	3838367	.	+	.	ID=id8288;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	INVERTED	3838838	3838865	.	-	.	ID=id8289;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	pseudogene	3838865	3839959	.	-	.	ID=gene3381;Name=YPO3436;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO3436;pseudo=true
AL590842.1	EMBL	CDS	3838865	3839959	.	-	0	ID=cds3334;Parent=gene3381;Note=This CDS is disrupted by the insertion of IS100 element. Its N-terminal region is similar to the N-terminal regions of Neisseria meningitidis hypothetical protein Nma0428 TR:Q9JWD7 (EMBL:AL162753) (548 aa) fasta scores: E(): 0.00011%2C 29.1%25 id in 223 aa%2C and to the N-terminal regions of several DNA mismatch repair proteins;gbkey=CDS;inference=similar to sequence:INSDC:AL162753;product=hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	3839952	3841862	.	-	.	ID=gene3382;Name=YPO3437;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3437
AL590842.1	EMBL	CDS	3839952	3841862	.	-	0	ID=cds3335;Parent=gene3382;Dbxref=InterPro:IPR004919,InterPro:IPR011089,UniProtKB/TrEMBL:Q0WBL0,NCBI_GP:CAL22026.1;Name=CAL22026.1;Note=Shows weak similarity to Helicobacter pylori hypothetical protein HP1409 TR:O34810 (EMBL:AE000641) (578 aa) fasta scores: E(): 0.0003%2C 21.9%25 id in 590 aa%2C and to Streptomyces coelicolor hypothetical protein SC6G9.04c TR:Q9XAG9 (EMBL:AL079356) (565 aa) fasta scores: E(): 0.00054%2C 21.4%25 id in 590 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL079356;product=conserved hypothetical protein;protein_id=CAL22026.1;transl_table=11
AL590842.1	EMBL	gene	3842016	3843275	.	-	.	ID=gene3383;Name=intB;gbkey=Gene;gene=intB;gene_biotype=protein_coding;locus_tag=YPO3438
AL590842.1	EMBL	CDS	3842016	3843275	.	-	0	ID=cds3336;Parent=gene3383;Dbxref=GOA:Q0WBK9,InterPro:IPR002104,InterPro:IPR011010,InterPro:IPR013762,InterPro:IPR023109,InterPro:IPR025166,UniProtKB/TrEMBL:Q0WBK9,NCBI_GP:CAL22027.1;Name=CAL22027.1;Note=Similar to Escherichia coli prophage P4 integrase IntB SW:INTB_ECOLI (P39347) (396 aa) fasta scores: E(): 0%2C78.1%25 id in 392 aa%2C and to Yersinia pestis Int protein TR:Q9Z3B4 (EMBL:AL031866) (420 aa) fasta scores: E(): 0%2C55.0%25 id in 416 aa. Similar to YPO1917 (55.0%25 identity in 416 aa overlap);gbkey=CDS;gene=intB;inference=similar to sequence:INSDC:AL031866;product=integrase;protein_id=CAL22027.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3842109	3842681	.	-	.	ID=id8290;Note=Pfam match to entry PF00589 Phage_integrase%2C Phage integrase family%2C score 134.50%2C E-value 1.9e-36;gbkey=misc_feature;gene=intB;inference=protein motif:PF00589
AL590842.1	EMBL	tRNA	3843474	3843558	.	-	.	ID=rna75;Note=tRNA Leu anticodon CAA%2C Cove score 74.86;gbkey=tRNA;product=tRNA-Leu
AL590842.1	EMBL	exon	3843474	3843558	.	-	.	ID=id8291;Parent=rna75;Note=tRNA Leu anticodon CAA%2C Cove score 74.86;gbkey=tRNA;product=tRNA-Leu
AL590842.1	EMBL	gene	3843663	3844739	.	-	.	ID=gene3384;Name=YPO3439;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3439
AL590842.1	EMBL	CDS	3843663	3844739	.	-	0	ID=cds3337;Parent=gene3384;Dbxref=GOA:Q7CKF3,InterPro:IPR005495,UniProtKB/TrEMBL:Q7CKF3,NCBI_GP:CAL22028.1;Name=CAL22028.1;Note=Similar to Escherichia coli hypothetical 39.8 kDa protein in pepA-gntV intergenic region YjgQ SW:YJGQ_ECOLI (P39341) (361 aa) fasta scores: E(): 0%2C 76.7%25 id in 356 aa%2Cand to Haemophilus influenzae hypothetical protein Hi1703 SW:YJGQ_HAEIN (P45332) (358 aa) fasta scores: E(): 0%2C 52.2%25 id in 358 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL22028.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3843675	3843740	.	-	.	ID=id8292;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3843780	3843830	.	-	.	ID=id8293;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3843852	3843908	.	-	.	ID=id8294;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3844368	3844433	.	-	.	ID=id8295;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3844497	3844553	.	-	.	ID=id8296;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3844638	3844703	.	-	.	ID=id8297;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3844739	3845833	.	-	.	ID=gene3385;Name=YPO3440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3440
AL590842.1	EMBL	CDS	3844739	3845833	.	-	0	ID=cds3338;Parent=gene3385;Dbxref=GOA:Q7CKF4,InterPro:IPR005495,UniProtKB/TrEMBL:Q7CKF4,NCBI_GP:CAL22029.1;Name=CAL22029.1;Note=Similar to Escherichia coli hypothetical 40.4 kDa protein in pepA-gntV intergenic region YjgP SW:YJGP_ECOLI (P39340) (366 aa) fasta scores: E(): 0%2C 70.7%25 id in 365 aa%2Cand to Haemophilus influenzae hypothetical protein Hi1704 SW:YJGP_HAEIN (P45333) (372 aa) fasta scores: E(): 0%2C 49.0%25 id in 357 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL22029.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3844784	3844849	.	-	.	ID=id8298;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3844895	3844945	.	-	.	ID=id8299;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3844967	3845032	.	-	.	ID=id8300;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3845477	3845542	.	-	.	ID=id8301;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3845606	3845671	.	-	.	ID=id8302;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3845717	3845782	.	-	.	ID=id8303;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3846113	3847624	.	+	.	ID=gene3386;Name=carP;gbkey=Gene;gene=carP;gene_biotype=protein_coding;gene_synonym=pepA,xerB;locus_tag=YPO3441
AL590842.1	EMBL	CDS	3846113	3847624	.	+	0	ID=cds3339;Parent=gene3386;Dbxref=GOA:Q8ZBH3,InterPro:IPR000819,InterPro:IPR008283,InterPro:IPR011356,InterPro:IPR023042,NCBI_GP:CAL22030.1;Name=CAL22030.1;Note=Similar to Escherichia coli cytosol aminopeptidase PepA or XerB or CarP SW:AMPA_ECOLI (P11648) (503 aa) fasta scores: E(): 0%2C 91.5%25 id in 503 aa%2C and to Vibrio cholerae cytosol aminopeptidase PepA or Vc2501 SW:AMPA_VIBCH (Q9K2W5) (503 aa) fasta scores: E(): 0%2C 80.1%25 id in 498 aa;gbkey=CDS;gene=carP;product=cytosol aminopeptidase;protein_id=CAL22030.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3846272	3847510	.	+	.	ID=id8304;Note=Pfam match to entry PF00883 Peptidase_M17%2C Cytosol aminopeptidase family%2C score 779.10%2C E-value 1.7e-230;gbkey=misc_feature;gene=carP;inference=protein motif:PF00883
AL590842.1	EMBL	sequence_feature	3847160	3847183	.	+	.	ID=id8305;Note=PS00631 Cytosol aminopeptidase signature.;gbkey=misc_feature;gene=carP;inference=protein motif:ProSite:PS00631
AL590842.1	EMBL	gene	3847775	3848224	.	+	.	ID=gene3387;Name=holC;gbkey=Gene;gene=holC;gene_biotype=protein_coding;locus_tag=YPO3442
AL590842.1	EMBL	CDS	3847775	3848224	.	+	0	ID=cds3340;Parent=gene3387;Dbxref=GOA:Q74X22,InterPro:IPR007459,UniProtKB/TrEMBL:Q74X22,NCBI_GP:CAL22031.1;Name=CAL22031.1;Note=Similar to Escherichia coli DNA polymerase III%2C chi subunit HolC SW:HOLC_ECOLI (P28905) (147 aa) fasta scores: E(): 0%2C 71.7%25 id in 145 aa;gbkey=CDS;gene=holC;product=DNA polymerase III%2C chi subunit;protein_id=CAL22031.1;transl_table=11
AL590842.1	EMBL	gene	3848237	3851134	.	+	.	ID=gene3388;Name=valS;gbkey=Gene;gene=valS;gene_biotype=protein_coding;locus_tag=YPO3443
AL590842.1	EMBL	CDS	3848237	3851134	.	+	0	ID=cds3341;Parent=gene3388;Dbxref=GOA:Q8ZBH1,InterPro:IPR001412,InterPro:IPR002300,InterPro:IPR002303,InterPro:IPR009008,InterPro:IPR009080,InterPro:IPR010978,InterPro:IPR013155,InterPro:IPR014729,InterPro:IPR019499,NCBI_GP:CAL22032.1;Name=CAL22032.1;Note=Similar to Escherichia coli valyl-tRNA synthetase ValS SW:SYV_ECOLI (P07118) (951 aa) fasta scores: E(): 0%2C87.3%25 id in 951 aa%2C and to Vibrio cholerae valyl-tRNA synthetase ValS or Vc2503 TR:Q9KP73 (EMBL:AE004320) (953 aa) fasta scores: E(): 0%2C 75.0%25 id in 953 aa;gbkey=CDS;gene=valS;inference=similar to sequence:INSDC:AE004320;product=valyl-tRNA synthetase;protein_id=CAL22032.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3848315	3850345	.	+	.	ID=id8306;Note=Pfam match to entry PF00133 tRNA-synt_1%2C tRNA synthetases class I (I%2C L%2C M and V)%2C score 1220.00%2C E-value 0;gbkey=misc_feature;gene=valS;inference=protein motif:PF00133
AL590842.1	EMBL	sequence_feature	3848402	3848437	.	+	.	ID=id8307;Note=PS00178 Aminoacyl-transfer RNA synthetases class-I signature.;gbkey=misc_feature;gene=valS;inference=protein motif:ProSite:PS00178
AL590842.1	EMBL	gene	3851277	3851780	.	+	.	ID=gene3389;Name=YPO3444;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3444
AL590842.1	EMBL	CDS	3851277	3851780	.	+	0	ID=cds3342;Parent=gene3389;Dbxref=GOA:Q7CKF6,InterPro:IPR000182,InterPro:IPR016181,UniProtKB/TrEMBL:Q7CKF6,NCBI_GP:CAL22033.1;Name=CAL22033.1;Note=Similar to Escherichia coli hypothetical 18.6 kDa protein in argI-valS intergenic region YjgM or B4256 SW:YJGM_ECOLI (P39337) (167 aa) fasta scores: E(): 0%2C 66.5%25 id in 167 aa%2C and to Salmonella typhimurium hypothetical 18.3 kDa protein in miaE 3'region YjgM SW:YJGM_SALTY (Q08021) (167 aa) fasta scores: E(): 0%2C 68.3%25 id in 167 aa;gbkey=CDS;product=putative acetyltransferase;protein_id=CAL22033.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3851475	3851711	.	+	.	ID=id8308;Note=Pfam match to entry PF00583 Acetyltransf%2CAcetyltransferase (GNAT) family%2C score 63.60%2C E-value 4.3e-15;gbkey=misc_feature;inference=protein motif:PF00583
AL590842.1	EMBL	sequence_feature	3851628	3851663	.	+	.	ID=id8309;Note=PS00139 Eukaryotic thiol (cysteine) proteases cysteine active site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00139
AL590842.1	EMBL	gene	3852287	3852718	.	-	.	ID=gene3390;Name=YPO3445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3445
AL590842.1	EMBL	CDS	3852287	3852718	.	-	0	ID=cds3343;Parent=gene3390;Dbxref=GOA:Q7CKF7,InterPro:IPR009671,InterPro:IPR016716,UniProtKB/TrEMBL:Q7CKF7,NCBI_GP:CAL22034.1;Name=CAL22034.1;Note=Similar to Escherichia coli hypothetical protein YjgD SW:YJGD_ECOLI (P37163) (138 aa) fasta scores: E(): 0%2C76.2%25 id in 143 aa%2C and to Salmonella typhimurium hypothetical protein YjgD SW:YJGD_SALTY (Q08019) (138 aa) fasta scores: E(): 0%2C 76.2%25 id in 143 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL22034.1;transl_table=11
AL590842.1	EMBL	gene	3852930	3853937	.	+	.	ID=gene3391;Name=argI;gbkey=Gene;gene=argI;gene_biotype=protein_coding;locus_tag=YPO3446
AL590842.1	EMBL	CDS	3852930	3853937	.	+	0	ID=cds3344;Parent=gene3391;Dbxref=GOA:Q8ZBG8,InterPro:IPR002292,InterPro:IPR006130,InterPro:IPR006131,InterPro:IPR006132,InterPro:IPR024904,NCBI_GP:CAL22035.1;Name=CAL22035.1;Note=Similar to Escherichia coli ornithine carbamoyltransferase chain I ArgI SW:OTC1_ECOLI (P04391) (333 aa) fasta scores: E(): 0%2C 80.1%25 id in 331 aa%2C and to Vibrio cholerae ornithine carbamoyltransferase Vc2508 TR:Q9KP68 (EMBL:AE004321) (334 aa) fasta scores: E(): 0%2C71.0%25 id in 328 aa;gbkey=CDS;gene=argI;inference=similar to sequence:INSDC:AE004321;product=ornithine carbamoyltransferase chain I;protein_id=CAL22035.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3852948	3853925	.	+	.	ID=id8310;Note=Pfam match to entry PF00185 OTCace%2CAspartate/ornithine carbamoyltransferase%2C score 633.40%2CE-value 1.3e-186;gbkey=misc_feature;gene=argI;inference=protein motif:PF00185
AL590842.1	EMBL	sequence_feature	3853083	3853106	.	+	.	ID=id8311;Note=PS00097 Aspartate and ornithine carbamoyltransferases signature.;gbkey=misc_feature;gene=argI;inference=protein motif:ProSite:PS00097
AL590842.1	EMBL	gene	3854244	3854702	.	-	.	ID=gene3392;Name=YPO3447;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3447
AL590842.1	EMBL	CDS	3854244	3854702	.	-	0	ID=cds3345;Parent=gene3392;Dbxref=InterPro:IPR004375,UniProtKB/TrEMBL:Q7CKF8,NCBI_GP:CAL22036.1;Name=CAL22036.1;Note=Similar to Escherichia coli protein YjgK SW:YJGK_ECOLI (P39335) (150 aa) fasta scores: E(): 0%2C 71.1%25 id in 149 aa%2C and to Vibrio cholerae hypothetical protein VC1555 TR:Q9KRT1 (EMBL:AE004233) (170 aa) fasta scores: E(): 1.8e-20%2C 43.3%25 id in 150 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004233;product=conserved hypothetical protein;protein_id=CAL22036.1;transl_table=11
AL590842.1	EMBL	pseudogene	3855341	3856908	.	+	.	ID=gene3393;Name=YPO3448;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO3448;pseudo=true
AL590842.1	EMBL	CDS	3855341	3856908	.	+	0	ID=cds3346;Parent=gene3393;Note=Similar to Escherichia coli O157:H7 putative hemin-binding lipoprotein Z2223 TR:AAG56282 (EMBL:AE005357) (516 aa) fasta scores: E(): 1.6e-24%2C 31.0%25 id in 506 aa%2Cand to Escherichia coli putative binding protein YddS precursor SW:YDDS_ECOLI (P76128) (516 aa) fasta scores: E(): 2.7e-24%2C 31.7%25 id in 499 aa. There is a frameshift and a stop codon following codon 390. The frameshift occurs within a homopolymeric tract of 7G. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=similar to sequence:INSDC:AE005357;product=putative extracellular solute-binding protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	3855506	3855691	.	+	.	ID=id8312;Note=Pfam match to entry PF00496 SBP_bac_5%2C Bacterial extracellular solute-binding proteins%2C family 5%2C score 20.30%2C E-value 6.9e-05;gbkey=misc_feature;inference=protein motif:PF00496
AL590842.1	EMBL	sequence_feature	3855935	3856444	.	+	.	ID=id8313;Note=Pfam match to entry PF00496 SBP_bac_5%2C Bacterial extracellular solute-binding proteins%2C family 5%2C score 20.40%2C E-value 6.6e-05;gbkey=misc_feature;inference=protein motif:PF00496
AL590842.1	EMBL	sequence_feature	3856717	3856905	.	+	.	ID=id8314;Note=Pfam match to entry PF00496 SBP_bac_5%2C Bacterial extracellular solute-binding proteins%2C family 5%2C score 27.20%2C E-value 8.5e-07;gbkey=misc_feature;inference=protein motif:PF00496
AL590842.1	EMBL	gene	3857004	3858053	.	+	.	ID=gene3394;Name=YPO3450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3450
AL590842.1	EMBL	CDS	3857004	3858053	.	+	0	ID=cds3347;Parent=gene3394;Dbxref=GOA:Q7CKF9,InterPro:IPR000515,UniProtKB/TrEMBL:Q7CKF9,NCBI_GP:CAL22038.1;Name=CAL22038.1;Note=Similar to Escherichia coli hypothetical ABC transporter permease protein YddR SW:YDDR_ECOLI (P77308) (340 aa) fasta scores: E(): 0%2C 44.7%25 id in 329 aa%2C and to E. coli dipeptide transport system permease protein DppB SW:DPPB_ECOLI (P37316) (339 aa) fasta scores: E(): 0%2C 38.5%25 id in 335 aa%2C and to Pseudomonas aeruginosa probable permease of ABC transporter Pa4503 TR:AAG07891 (EMBL:AE004864) (336 aa) fasta scores: E(): 0%2C 41.5%25 id in 335 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004864;product=putative transporter%2C permease protein;protein_id=CAL22038.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3857052	3857120	.	+	.	ID=id8315;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3857343	3857411	.	+	.	ID=id8316;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3857448	3857516	.	+	.	ID=id8317;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3857628	3857696	.	+	.	ID=id8318;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3857724	3857957	.	+	.	ID=id8319;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 50.20%2C E-value 4.5e-11;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	3857790	3857858	.	+	.	ID=id8320;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3857934	3858002	.	+	.	ID=id8321;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3858072	3858908	.	+	.	ID=gene3395;Name=YPO3451;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3451
AL590842.1	EMBL	CDS	3858072	3858908	.	+	0	ID=cds3348;Parent=gene3395;Dbxref=GOA:Q7CKG0,InterPro:IPR000515,InterPro:IPR025966,UniProtKB/TrEMBL:Q7CKG0,NCBI_GP:CAL22039.1;Name=CAL22039.1;Note=Similar to Escherichia coli dipeptide transport system permease protein DppC SW:DPPC_ECOLI (P37315) (300 aa) fasta scores: E(): 0%2C 42.3%25 id in 279 aa%2C and to Pseudomonas aeruginosa probable permease of ABC transporter Pa4504 TR:AAG07892 (EMBL:AE004864) (303 aa) fasta scores: E(): 0%2C 43.4%25 id in 279 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004864;product=putative transporter%2C permease protein;protein_id=CAL22039.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3858108	3858176	.	+	.	ID=id8322;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3858318	3858386	.	+	.	ID=id8323;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3858447	3858515	.	+	.	ID=id8324;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3858558	3858788	.	+	.	ID=id8325;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 24.50%2C E-value 0.0026;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	3858672	3858740	.	+	.	ID=id8326;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3858801	3858869	.	+	.	ID=id8327;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3858901	3859779	.	+	.	ID=gene3396;Name=YPO3452;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3452
AL590842.1	EMBL	CDS	3858901	3859779	.	+	0	ID=cds3349;Parent=gene3396;Dbxref=GOA:Q0WBJ7,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WBJ7,NCBI_GP:CAL22040.1;Name=CAL22040.1;Note=Similar to Escherichia coli dipeptide transport ATP-binding protein DppD SW:DPPD_ECOLI (P37314) (327 aa) fasta scores: E(): 1.9e-26%2C 42.1%25 id in 271 aa%2C and to Pyrococcus abyssi peptide ABC transporter ATP-binding protein Pab1874 TR:Q9V0P6 (EMBL:AJ248285) (329 aa) fasta scores: E(): 2.2e-31%2C 37.7%25 id in 289 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ248285;product=putative ABC transporter transporter%2C ATP-binding protein;protein_id=CAL22040.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3858988	3859617	.	+	.	ID=id8328;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 163.90%2C E-value 2.7e-45;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	3859009	3859032	.	+	.	ID=id8329;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3859273	3859296	.	+	.	ID=id8330;Note=PS00881 Protein splicing signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00881
AL590842.1	EMBL	gene	3859781	3860482	.	+	.	ID=gene3397;Name=YPO3453;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3453
AL590842.1	EMBL	CDS	3859781	3860482	.	+	0	ID=cds3350;Parent=gene3397;Dbxref=GOA:Q0WBJ6,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WBJ6,NCBI_GP:CAL22041.1;Name=CAL22041.1;Note=Similar to Helicobacter pylori dipeptide ABC transporter%2C ATP-binding protein Hp0302 TR:O25073 (EMBL:AE000548) (268 aa) fasta scores: E(): 1.6e-32%2C 44.4%25 id in 223 aa%2C and to Bacillus subtilis oligopeptide transport ATP-binding protein AppF SW:APPF_BACSU (P42065) (329 aa) fasta scores: E(): 1.5e-30%2C 42.6%25 id in 223 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE000548;product=putative ABC transporter%2C ATP-binding protein;protein_id=CAL22041.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3859862	3860422	.	+	.	ID=id8331;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 210.70%2C E-value 2.3e-59;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	3859883	3859906	.	+	.	ID=id8332;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3860192	3860236	.	+	.	ID=id8333;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	3860916	3863054	.	+	.	ID=gene3398;Name=nrdD;gbkey=Gene;gene=nrdD;gene_biotype=protein_coding;locus_tag=YPO3454
AL590842.1	EMBL	CDS	3860916	3863054	.	+	0	ID=cds3351;Parent=gene3398;Dbxref=GOA:Q7CKG1,InterPro:IPR001150,InterPro:IPR005144,InterPro:IPR012833,InterPro:IPR019777,UniProtKB/TrEMBL:Q7CKG1,NCBI_GP:CAL22042.1;Name=CAL22042.1;Note=Similar to Escherichia coli anaerobic ribonucleoside-triphosphate reductase NrdD SW:NRDD_ECOLI (P28903) (712 aa) fasta scores: E(): 0%2C 86.0%25 id in 709 aa%2Cand to Salmonella typhimurium anaerobic ribonucleoside-triphosphate reductase NrdD TR:Q9L646 (EMBL:AF242390) (712 aa) fasta scores: E(): 0%2C 87.2%25 id in 709 aa;gbkey=CDS;gene=nrdD;inference=similar to sequence:INSDC:AF242390;product=anaerobic ribonucleoside-triphosphate reductase;protein_id=CAL22042.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3862656	3862985	.	+	.	ID=id8334;Note=Pfam match to entry PF01228 Gly_radical%2C Glycine radical%2C score 184.20%2C E-value 2.1e-51;gbkey=misc_feature;gene=nrdD;inference=protein motif:PF01228
AL590842.1	EMBL	sequence_feature	3862941	3862967	.	+	.	ID=id8335;Note=PS00850 Glycine radical signature.;gbkey=misc_feature;gene=nrdD;inference=protein motif:ProSite:PS00850
AL590842.1	EMBL	gene	3863261	3863695	.	+	.	ID=gene3399;Name=nrdG;gbkey=Gene;gene=nrdG;gene_biotype=protein_coding;locus_tag=YPO3455
AL590842.1	EMBL	CDS	3863261	3863695	.	+	0	ID=cds3352;Parent=gene3399;Dbxref=GOA:Q7CKG2,InterPro:IPR001989,InterPro:IPR012837,InterPro:IPR013785,UniProtKB/TrEMBL:Q7CKG2,NCBI_GP:CAL22043.1;Name=CAL22043.1;Note=Similar to Escherichia coli anaerobic ribonucleoside-triphosphate reductase activating protein NrdG SW:NRDG_ECOLI (P39329) (154 aa) fasta scores: E(): 0%2C79.2%25 id in 144 aa%2C and to Salmonella typhimurium anaerobic ribonucleoside-triphosphate reductase activating protein NrdG TR:Q9L645 (EMBL:AF242390) (154 aa) fasta scores: E(): 0%2C 80.6%25 id in 144 aa;gbkey=CDS;gene=nrdG;inference=similar to sequence:INSDC:AF242390;product=anaerobic ribonucleoside-triphosphate reductase activating protein;protein_id=CAL22043.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3863270	3863335	.	+	.	ID=id8336;Note=PS01087 Radical activating enzymes signature.;gbkey=misc_feature;gene=nrdG;inference=protein motif:ProSite:PS01087
AL590842.1	EMBL	gene	3864023	3864748	.	+	.	ID=gene3400;Name=phnF;gbkey=Gene;gene=phnF;gene_biotype=protein_coding;locus_tag=YPO3456
AL590842.1	EMBL	CDS	3864023	3864748	.	+	0	ID=cds3353;Parent=gene3400;Dbxref=GOA:Q7CKG3,InterPro:IPR000524,InterPro:IPR011663,InterPro:IPR011991,InterPro:IPR012702,InterPro:IPR028978,UniProtKB/TrEMBL:Q7CKG3,NCBI_GP:CAL22044.1;Name=CAL22044.1;Note=Similar to Escherichia coli PhnF protein SW:PHNF_ECOLI (P16684) (241 aa) fasta scores: E(): 0%2C 73.4%25 id in 241 aa%2C and to Pseudomonas aeruginosa probable transcriptional regulator PA3381 TR:AAG06769 (EMBL:AE004759) (240 aa) fasta scores: E(): 9e-26%2C 43.3%25 id in 233 aa;gbkey=CDS;gene=phnF;inference=similar to sequence:INSDC:AE004759;product=probable gntR-family transcriptional regulatory protein;protein_id=CAL22044.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3864071	3864247	.	+	.	ID=id8337;Note=Pfam match to entry PF00392 gntR%2C Bacterial regulatory proteins%2C gntR family%2C score 87.70%2C E-value 1.5e-25;gbkey=misc_feature;gene=phnF;inference=protein motif:PF00392
AL590842.1	EMBL	sequence_feature	3864125	3864199	.	+	.	ID=id8338;Note=PS00043 Bacterial regulatory proteins%2C gntR family signature.;gbkey=misc_feature;gene=phnF;inference=protein motif:ProSite:PS00043
AL590842.1	EMBL	sequence_feature	3864128	3864193	.	+	.	ID=id8339;Note=Predicted helix-turn-helix motif with score 1194 (+3.25 SD) at aa 36-57%2C sequence PSEQQLADRYQVNRHTLRRAVD;gbkey=misc_feature;gene=phnF
AL590842.1	EMBL	gene	3864749	3865225	.	+	.	ID=gene3401;Name=phnG;gbkey=Gene;gene=phnG;gene_biotype=protein_coding;locus_tag=YPO3457
AL590842.1	EMBL	CDS	3864749	3865225	.	+	0	ID=cds3354;Parent=gene3401;Dbxref=GOA:Q7CKG4,InterPro:IPR009609,UniProtKB/TrEMBL:Q7CKG4,NCBI_GP:CAL22045.1;Name=CAL22045.1;Note=Similar to Escherichia coli PhnG protein SW:PHNG_ECOLI (P16685) (150 aa) fasta scores: E(): 6e-22%2C50.6%25 id in 158 aa;gbkey=CDS;gene=phnG;product=PhnG protein;protein_id=CAL22045.1;transl_table=11
AL590842.1	EMBL	gene	3865225	3865851	.	+	.	ID=gene3402;Name=phnH;gbkey=Gene;gene=phnH;gene_biotype=protein_coding;locus_tag=YPO3458
AL590842.1	EMBL	CDS	3865225	3865851	.	+	0	ID=cds3355;Parent=gene3402;Dbxref=GOA:Q0WBJ1,InterPro:IPR008772,UniProtKB/TrEMBL:Q0WBJ1,NCBI_GP:CAL22046.1;Name=CAL22046.1;Note=Similar to Escherichia coli PhnH protein SW:PHNH_ECOLI (P16686) (194 aa) fasta scores: E(): 8.8e-25%2C48.8%25 id in 209 aa;gbkey=CDS;gene=phnH;product=PhnH protein;protein_id=CAL22046.1;transl_table=11
AL590842.1	EMBL	gene	3865851	3867029	.	+	.	ID=gene3403;Name=phnI;gbkey=Gene;gene=phnI;gene_biotype=protein_coding;locus_tag=YPO3459
AL590842.1	EMBL	CDS	3865851	3867029	.	+	0	ID=cds3356;Parent=gene3403;Dbxref=GOA:Q74X37,InterPro:IPR008773,UniProtKB/TrEMBL:Q74X37,NCBI_GP:CAL22047.1;Name=CAL22047.1;Note=Similar to Escherichia coli PhnI protein SW:PHNI_ECOLI (P16687) (354 aa) fasta scores: E(): 0%2C 74.5%25 id in 353 aa%2C and to Rhizobium meliloti PhnI protein SW:PHNI_RHIME (Q52986) (368 aa) fasta scores: E(): 0%2C 59.8%25 id in 363 aa;gbkey=CDS;gene=phnI;product=PhnI protein;protein_id=CAL22047.1;transl_table=11
AL590842.1	EMBL	gene	3867022	3867903	.	+	.	ID=gene3404;Name=phnJ;gbkey=Gene;gene=phnJ;gene_biotype=protein_coding;locus_tag=YPO3460
AL590842.1	EMBL	CDS	3867022	3867903	.	+	0	ID=cds3357;Parent=gene3404;Dbxref=GOA:Q7CKG5,InterPro:IPR010306,UniProtKB/TrEMBL:Q7CKG5,NCBI_GP:CAL22048.1;Name=CAL22048.1;Note=Similar to Escherichia coli PhnJ protein SW:PHNJ_ECOLI (P16688) (281 aa) fasta scores: E(): 0%2C 85.3%25 id in 279 aa%2C and to Rhizobium meliloti PhnJ protein SW:PHNJ_RHIME (Q52987) (297 aa) fasta scores: E(): 0%2C 75.4%25 id in 284 aa;gbkey=CDS;gene=phnJ;product=PhnJ protein;protein_id=CAL22048.1;transl_table=11
AL590842.1	EMBL	gene	3867903	3868694	.	+	.	ID=gene3405;Name=phnK;gbkey=Gene;gene=phnK;gene_biotype=protein_coding;locus_tag=YPO3461
AL590842.1	EMBL	CDS	3867903	3868694	.	+	0	ID=cds3358;Parent=gene3405;Dbxref=GOA:Q0WBI8,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR012700,InterPro:IPR013563,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WBI8,NCBI_GP:CAL22049.1;Name=CAL22049.1;Note=Similar to Escherichia coli phosphonates transport ATP-binding protein PhnK SW:PHNK_ECOLI (P16678) (252 aa) fasta scores: E(): 0%2C 85.5%25 id in 255 aa%2C and to Rhizobium meliloti PhnK TR:Q52988 (EMBL:M96263) (258 aa) fasta scores: E(): 0%2C 66.8%25 id in 253 aa;gbkey=CDS;gene=phnK;inference=similar to sequence:INSDC:M96263;product=phosphonates transport ATP-binding protein;protein_id=CAL22049.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3868011	3868601	.	+	.	ID=id8340;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 200.80%2C E-value 2e-56;gbkey=misc_feature;gene=phnK;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	3868032	3868055	.	+	.	ID=id8341;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=phnK;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3868371	3868415	.	+	.	ID=id8342;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=phnK;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	3869083	3869802	.	+	.	ID=gene3406;Name=phnL;gbkey=Gene;gene=phnL;gene_biotype=protein_coding;locus_tag=YPO3462
AL590842.1	EMBL	CDS	3869083	3869802	.	+	0	ID=cds3359;Parent=gene3406;Dbxref=GOA:Q7CKG6,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR012701,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CKG6,NCBI_GP:CAL22050.1;Name=CAL22050.1;Note=Similar to Escherichia coli phosphonates transport ATP-binding protein PhnL SW:PHNL_ECOLI (P16679) (226 aa) fasta scores: E(): 0%2C 76.5%25 id in 221 aa;gbkey=CDS;gene=phnL;product=phosphonates transport ATP-binding protein;protein_id=CAL22050.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3869194	3869769	.	+	.	ID=id8343;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 188.30%2C E-value 1.2e-52;gbkey=misc_feature;gene=phnL;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	3869215	3869238	.	+	.	ID=id8344;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=phnL;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3869542	3869586	.	+	.	ID=id8345;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=phnL;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	3869799	3870935	.	+	.	ID=gene3407;Name=phnM;gbkey=Gene;gene=phnM;gene_biotype=protein_coding;locus_tag=YPO3463
AL590842.1	EMBL	CDS	3869799	3870935	.	+	0	ID=cds3360;Parent=gene3407;Dbxref=GOA:Q7CKG7,InterPro:IPR011059,InterPro:IPR012696,UniProtKB/TrEMBL:Q7CKG7,NCBI_GP:CAL22051.1;Name=CAL22051.1;Note=Similar to Escherichia coli PhnM protein SW:PHNM_ECOLI (P16689) (378 aa) fasta scores: E(): 0%2C 73.5%25 id in 378 aa%2C and to Rhizobium leguminosarum PhnM TR:Q9XAT4 (EMBL:AJ243305) (376 aa) fasta scores: E(): 8.5e-33%2C 32.6%25 id in 386 aa;gbkey=CDS;gene=phnM;inference=similar to sequence:INSDC:AJ243305;product=PhnM protein;protein_id=CAL22051.1;transl_table=11
AL590842.1	EMBL	gene	3870935	3871516	.	+	.	ID=gene3408;Name=phnN;gbkey=Gene;gene=phnN;gene_biotype=protein_coding;locus_tag=YPO3464
AL590842.1	EMBL	CDS	3870935	3871516	.	+	0	ID=cds3361;Parent=gene3408;Dbxref=GOA:Q7CKG8,InterPro:IPR008144,InterPro:IPR008145,InterPro:IPR012699,InterPro:IPR027417,NCBI_GP:CAL22052.1;Name=CAL22052.1;Note=Similar to Escherichia coli PhnN protein SW:PHNN_ECOLI (P16690) (185 aa) fasta scores: E(): 0%2C 56.5%25 id in 177 aa;gbkey=CDS;gene=phnN;product=PhnN protein;protein_id=CAL22052.1;transl_table=11
AL590842.1	EMBL	gene	3871507	3872259	.	+	.	ID=gene3409;Name=phnP;gbkey=Gene;gene=phnP;gene_biotype=protein_coding;locus_tag=YPO3465
AL590842.1	EMBL	CDS	3871507	3872259	.	+	0	ID=cds3362;Parent=gene3409;Dbxref=GOA:Q7CKG9,InterPro:IPR001279,InterPro:IPR017693,UniProtKB/TrEMBL:Q7CKG9,NCBI_GP:CAL22053.1;Name=CAL22053.1;Note=Similar to Escherichia coli PhnP protein SW:PHNP_ECOLI (P16692) (252 aa) fasta scores: E(): 0%2C 50.6%25 id in 247 aa;gbkey=CDS;gene=phnP;product=PhnP protein;protein_id=CAL22053.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3871648	3871683	.	+	.	ID=id8346;Note=PS00136 Serine proteases%2C subtilase family%2C aspartic acid active site.;gbkey=misc_feature;gene=phnP;inference=protein motif:ProSite:PS00136
AL590842.1	EMBL	gene	3872272	3872910	.	-	.	ID=gene3410;Name=YPO3466;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3466
AL590842.1	EMBL	CDS	3872272	3872910	.	-	0	ID=cds3363;Parent=gene3410;Dbxref=InterPro:IPR016040,UniProtKB/TrEMBL:Q7CKH0,NCBI_GP:CAL22054.1;Name=CAL22054.1;Note=Similar to Escherichia coli hypothetical protein YraR SW:YRAR_ECOLI (P45469) (226 aa) fasta scores: E(): 0%2C53.6%25 id in 207 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA4017 TR:AAG07404 (EMBL:AE004818) (213 aa) fasta scores: E(): 6.3e-31%2C 46.3%25 id in 205 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004818;product=conserved hypothetical protein;protein_id=CAL22054.1;transl_table=11
AL590842.1	EMBL	gene	3873062	3873505	.	-	.	ID=gene3411;Name=YPO3467;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3467
AL590842.1	EMBL	CDS	3873062	3873505	.	-	0	ID=cds3364;Parent=gene3411;Dbxref=GOA:Q8ZBE9,InterPro:IPR011194,InterPro:IPR012349,NCBI_GP:CAL22055.1;Name=CAL22055.1;Note=Similar to Escherichia coli hypothetical protein YhbP SW:YHBP_ECOLI (P45471) (147 aa) fasta scores: E(): 1.9e-27%2C 46.8%25 id in 139 aa%2C and to Pasteurella multocida hypothetical protein PM1958 TR:AAK04042 (EMBL:AE006232) (149 aa) fasta scores: E(): 3.1e-11%2C 29.3%25 id in 133 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE006232;product=conserved hypothetical protein;protein_id=CAL22055.1;transl_table=11
AL590842.1	EMBL	gene	3873604	3874770	.	-	.	ID=gene3412;Name=YPO3468;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3468
AL590842.1	EMBL	CDS	3873604	3874770	.	-	0	ID=cds3365;Parent=gene3412;Dbxref=GOA:Q7CKH1,InterPro:IPR008397,InterPro:IPR008929,UniProtKB/TrEMBL:Q7CKH1,NCBI_GP:CAL22056.1;Name=CAL22056.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22056.1;transl_table=11
AL590842.1	EMBL	gene	3874785	3875879	.	-	.	ID=gene3413;Name=YPO3469;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3469
AL590842.1	EMBL	CDS	3874785	3875879	.	-	0	ID=cds3366;Parent=gene3413;Dbxref=GOA:Q7CKH2,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR008995,InterPro:IPR012340,InterPro:IPR013611,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CKH2,NCBI_GP:CAL22057.1;Name=CAL22057.1;Note=Similar to Sphingomonas sp. AlgS TR:Q9KWT9 (EMBL:AB011415) (363 aa) fasta scores: E(): 0%2C 51.8%25 id in 357 aa%2C and to Rhizobium sp. probable ABC transporter ATP-binding protein Y4oS SW:Y4OS_RHISN (P55604) (371 aa) fasta scores: E(): 0%2C 56.0%25 id in 359 aa;gbkey=CDS;inference=similar to sequence:INSDC:AB011415;product=putative sugar ABC transporter%2C ATP-binding protein;protein_id=CAL22057.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3875250	3875795	.	-	.	ID=id8347;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 199.80%2C E-value 4.1e-56;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	3875436	3875480	.	-	.	ID=id8348;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	3875751	3875774	.	-	.	ID=id8349;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3875891	3876730	.	-	.	ID=gene3414;Name=YPO3470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3470
AL590842.1	EMBL	CDS	3875891	3876730	.	-	0	ID=cds3367;Parent=gene3414;Dbxref=GOA:Q7CKH3,InterPro:IPR000515,UniProtKB/TrEMBL:Q7CKH3,NCBI_GP:CAL22058.1;Name=CAL22058.1;Note=Similar to Synechocystis sp. lactose transport system permease protein LacG or Slr1723 TR:P73854 (EMBL:D90910) (270 aa) fasta scores: E(): 1.1e-29%2C 36.3%25 id in 281 aa%2C and to Thermotoga maritima sugar ABC transporter%2C permease protein Tm0430 TR:Q9WYR1 (EMBL:AE001721) (271 aa) fasta scores: E(): 9.7e-28%2C 31.9%25 id in 270 aa;gbkey=CDS;inference=similar to sequence:INSDC:D90910;product=sugar transport system%2C permease protein;protein_id=CAL22058.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3875939	3875995	.	-	.	ID=id8350;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3876020	3876244	.	-	.	ID=id8351;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 70.40%2C E-value 3.7e-17;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	3876110	3876175	.	-	.	ID=id8352;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3876155	3876241	.	-	.	ID=id8353;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	3876236	3876301	.	-	.	ID=id8354;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3876347	3876412	.	-	.	ID=id8355;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3876449	3876514	.	-	.	ID=id8356;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3876629	3876694	.	-	.	ID=id8357;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3876749	3877633	.	-	.	ID=gene3415;Name=YPO3471;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3471
AL590842.1	EMBL	CDS	3876749	3877633	.	-	0	ID=cds3368;Parent=gene3415;Dbxref=GOA:Q7CKH4,InterPro:IPR000515,UniProtKB/TrEMBL:Q7CKH4,NCBI_GP:CAL22059.1;Name=CAL22059.1;Note=Similar to Synechocystis sp. lactose transport system permease protein LacF or Slr1202 TR:P73352 (EMBL:D90905) (298 aa) fasta scores: E(): 0%2C 34.2%25 id in 284 aa%2C and to Bacillus halodurans sugar transport system Bh3689 TR:Q9K6N9 (EMBL:AP001519) (300 aa) fasta scores: E(): 4.2e-32%2C 35.7%25 id in 277 aa;gbkey=CDS;inference=similar to sequence:INSDC:D90905;product=sugar transport system%2C permease protein;protein_id=CAL22059.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3876773	3876838	.	-	.	ID=id8358;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3876872	3877093	.	-	.	ID=id8359;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 52.30%2C E-value 1.1e-11;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	3876950	3877015	.	-	.	ID=id8360;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3877076	3877141	.	-	.	ID=id8361;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3877259	3877324	.	-	.	ID=id8362;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3877346	3877411	.	-	.	ID=id8363;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3877532	3877597	.	-	.	ID=id8364;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3877641	3878954	.	-	.	ID=gene3416;Name=YPO3472;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3472
AL590842.1	EMBL	CDS	3877641	3878954	.	-	0	ID=cds3369;Parent=gene3416;Dbxref=GOA:Q7CKH5,InterPro:IPR006059,UniProtKB/TrEMBL:Q7CKH5,NCBI_GP:CAL22060.1;Name=CAL22060.1;Note=Similar to Thermococcus litoralis%2C and Pyrococcus furiosus trehalose/maltose binding protein MalE TR:O51923 (EMBL:AF012836) (450 aa) fasta scores: E(): 8.6e-17%2C 28.6%25 id in 399 aa%2C and to Bacillus stearothermophilus peripheral protein TR:Q9ZFM6 (EMBL:AF098273) (493 aa) fasta scores: E(): 5.6e-14%2C 29.1%25 id in 316 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF098273;product=putative sugar binding protein;protein_id=CAL22060.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3877935	3878564	.	-	.	ID=id8365;Note=Pfam match to entry PF01547 SBP_bacterial_1%2CBacterial extracellular solute-binding protein%2C score 100.10%2C E-value 4.4e-27;gbkey=misc_feature;inference=protein motif:PF01547
AL590842.1	EMBL	gene	3879512	3880738	.	+	.	ID=gene3417;Name=YPO3473;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3473
AL590842.1	EMBL	CDS	3879512	3880738	.	+	0	ID=cds3370;Parent=gene3417;Dbxref=GOA:Q74X50,InterPro:IPR008397,InterPro:IPR008929,UniProtKB/TrEMBL:Q74X50,NCBI_GP:CAL22061.1;Name=CAL22061.1;Note=no significant database matches;gbkey=CDS;product=putative exported protein;protein_id=CAL22061.1;transl_table=11
AL590842.1	EMBL	gene	3880762	3882780	.	+	.	ID=gene3418;Name=YPO3474;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3474
AL590842.1	EMBL	CDS	3880762	3882780	.	+	0	ID=cds3371;Parent=gene3418;Dbxref=GOA:Q74X51,InterPro:IPR008397,InterPro:IPR008929,InterPro:IPR012480,UniProtKB/TrEMBL:Q74X51,NCBI_GP:CAL22062.1;Name=CAL22062.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22062.1;transl_table=11
AL590842.1	EMBL	gene	3883011	3883298	.	+	.	ID=gene3419;Name=YPO3475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3475
AL590842.1	EMBL	CDS	3883011	3883298	.	+	0	ID=cds3372;Parent=gene3419;Dbxref=GOA:Q8ZBE1,InterPro:IPR000305,InterPro:IPR022992,NCBI_GP:CAL22063.1;Name=CAL22063.1;Note=Similar to Escherichia coli hypothetical protein YhbQ SW:YHBQ_ECOLI (P45472) (100 aa) fasta scores: E(): 1.3e-20%2C 73.1%25 id in 78 aa%2C and to Vibrio cholerae hypothetical protein VCA0739 TR:Q9KLK4 (EMBL:AE004403) (101 aa) fasta scores: E(): 5.6e-17%2C 61.2%25 id in 85 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004403;product=conserved hypothetical protein;protein_id=CAL22063.1;transl_table=11
AL590842.1	EMBL	gene	3883473	3883979	.	-	.	ID=gene3420;Name=YPO3476;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3476
AL590842.1	EMBL	CDS	3883473	3883979	.	-	0	ID=cds3373;Parent=gene3420;Dbxref=GOA:Q7CKH6,InterPro:IPR000182,InterPro:IPR016181,UniProtKB/TrEMBL:Q7CKH6,NCBI_GP:CAL22064.1;Name=CAL22064.1;Note=Similar to Escherichia coli hypothetical 18.5 kDa protein in sohA-mtr intergenic region YhbS SW:YHBS_ECOLI (P45473) (167 aa) fasta scores: E(): 0%2C 69.0%25 id in 168 aa%2Cand to Vibrio cholerae putative acetyltransferase Vc0655 TR:Q9KU68 (EMBL:AE004151) (183 aa) fasta scores: E(): 4.4e-29%2C 52.7%25 id in 165 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004151;product=putative acetyltransferase;protein_id=CAL22064.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3883608	3883835	.	-	.	ID=id8366;Note=Pfam match to entry PF00583 Acetyltransf%2CAcetyltransferase (GNAT) family%2C score 43.60%2C E-value 4.4e-09;gbkey=misc_feature;inference=protein motif:PF00583
AL590842.1	EMBL	gene	3883973	3884494	.	-	.	ID=gene3421;Name=YPO3477;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3477
AL590842.1	EMBL	CDS	3883973	3884494	.	-	0	ID=cds3374;Parent=gene3421;Dbxref=InterPro:IPR003033,InterPro:IPR016830,UniProtKB/TrEMBL:Q0WBH2,NCBI_GP:CAL22065.1;Name=CAL22065.1;Note=Similar to Escherichia coli hypothetical 19.7 kDa protein in sohA-mtr intergenic region YhbT SW:YHBT_ECOLI (P45474) (174 aa) fasta scores: E(): 0%2C 71.9%25 id in 160 aa%2Cand to Vibrio cholerae hypothetical protein Vc0654 TR:Q9KU69 (EMBL:AE004151) (175 aa) fasta scores: E(): 0%2C54.0%25 id in 161 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004151;product=putative lipid carrier protein;protein_id=CAL22065.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3884087	3884407	.	-	.	ID=id8367;Note=Pfam match to entry PF02036 SCP2%2C SCP-2 sterol transfer family%2C score 91.80%2C E-value 1.3e-23;gbkey=misc_feature;inference=protein motif:PF02036
AL590842.1	EMBL	gene	3884575	3884700	.	+	.	ID=gene3422;Name=YPO3478;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3478
AL590842.1	EMBL	CDS	3884575	3884700	.	+	0	ID=cds3375;Parent=gene3422;Dbxref=UniProtKB/TrEMBL:Q74X54,NCBI_GP:CAL22066.1;Name=CAL22066.1;Note=doubtful CDS with no significant database hits. Very low %25G+C;gbkey=CDS;product=hypothetical protein;protein_id=CAL22066.1;transl_table=11
AL590842.1	EMBL	gene	3884810	3885805	.	+	.	ID=gene3423;Name=YPO3479;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3479
AL590842.1	EMBL	CDS	3884810	3885805	.	+	0	ID=cds3376;Parent=gene3423;Dbxref=GOA:Q7CKH7,InterPro:IPR001539,InterPro:IPR022998,UniProtKB/TrEMBL:Q7CKH7,NCBI_GP:CAL22067.1;Name=CAL22067.1;Note=Similar to Proteus mirabilis STM-protease A TR:Q9ZA85 (EMBL:AF088981) (334 aa) fasta scores: E(): 0%2C83.8%25 id in 334 aa%2C and to Escherichia coli putative protease precursor YhbU SW:YHBU_ECOLI (P45527) (331 aa) fasta scores: E(): 0%2C 88.5%25 id in 331 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF088981;product=putative protease;protein_id=CAL22067.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3885029	3885802	.	+	.	ID=id8368;Note=Pfam match to entry PF01136 Peptidase_U32%2C Peptidase family U32%2C score 480.60%2C E-value 1.2e-140;gbkey=misc_feature;inference=protein motif:PF01136
AL590842.1	EMBL	sequence_feature	3885290	3885346	.	+	.	ID=id8369;Note=PS01276 Peptidase family U32 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01276
AL590842.1	EMBL	gene	3885817	3886695	.	+	.	ID=gene3424;Name=YPO3480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3480
AL590842.1	EMBL	CDS	3885817	3886695	.	+	0	ID=cds3377;Parent=gene3424;Dbxref=GOA:Q0WBG9,InterPro:IPR001539,UniProtKB/TrEMBL:Q0WBG9,NCBI_GP:CAL22068.1;Name=CAL22068.1;Note=Similar to Escherichia coli hypothetical protein YhbV SW:YHBV_ECOLI (P45475) (298 aa) fasta scores: E(): 0%2C75.9%25 id in 290 aa%2C and to Vibrio cholerae hypothetical protein VC0651 TR:Q9KU72 (EMBL:AE004151) (321 aa) fasta scores: E(): 0%2C 66.7%25 id in 288 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004151;product=conserved hypothetical protein;protein_id=CAL22068.1;transl_table=11
AL590842.1	EMBL	gene	3886836	3888242	.	-	.	ID=gene3425;Name=ibeB;gbkey=Gene;gene=ibeB;gene_biotype=protein_coding;locus_tag=YPO3481
AL590842.1	EMBL	CDS	3886836	3888242	.	-	0	ID=cds3378;Parent=gene3425;Dbxref=GOA:Q7CKH8,InterPro:IPR003423,InterPro:IPR010131,UniProtKB/TrEMBL:Q7CKH8,NCBI_GP:CAL22069.1;Name=CAL22069.1;Note=Similar to Escherichia coli probable outer membrane lipoprotein IbeB precursor SW:IBEB_ECOLI (P77211) (457 aa) fasta scores: E(): 0%2C 38.8%25 id in 464 aa%2C and to Pseudomonas aeruginosa outer membrane protein OprM precursor or OprK or Pa0427 TR:AAG03816 (EMBL:L23839) (485 aa) fasta scores: E(): 0%2C 48.0%25 id in 469 aa;gbkey=CDS;gene=ibeB;inference=similar to sequence:INSDC:L23839;product=probable outer membrane efflux lipoprotein;protein_id=CAL22069.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3886839	3887426	.	-	.	ID=id8370;Note=Pfam match to entry PF02321 OEP%2C %2C score 171.50%2CE-value 1.4e-47;gbkey=misc_feature;gene=ibeB;inference=protein motif:PF02321
AL590842.1	EMBL	sequence_feature	3887460	3888068	.	-	.	ID=id8371;Note=Pfam match to entry PF02321 OEP%2C %2C score 146.80%2CE-value 3.9e-40;gbkey=misc_feature;gene=ibeB;inference=protein motif:PF02321
AL590842.1	EMBL	sequence_feature	3888192	3888224	.	-	.	ID=id8372;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=ibeB;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	3888244	3891369	.	-	.	ID=gene3426;Name=YPO3482;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3482
AL590842.1	EMBL	CDS	3888244	3891369	.	-	0	ID=cds3379;Parent=gene3426;Dbxref=GOA:Q7CKH9,InterPro:IPR001036,InterPro:IPR004764,InterPro:IPR027463,UniProtKB/TrEMBL:Q7CKH9,NCBI_GP:CAL22070.1;Name=CAL22070.1;Note=Similar to Escherichia coli acriflavin resistance protein B AcrB or AcrE SW:ACRB_ECOLI (P31224) (1049 aa) fasta scores: E(): 0%2C 57.8%25 id in 1040 aa%2C and to Escherichia coli acriflavin resistance protein F AcrF or EnvD SW:ACRF_ECOLI (P24181) (1034 aa) fasta scores: E(): 0%2C56.6%25 id in 1033 aa%2C and to Pseudomonas aeruginosa multidrug resistance protein MexB or Pa0426 TR:AAG03815 (EMBL:L11616) (1046 aa) fasta scores: E(): 0%2C 56.1%25 id in 1034 aa. Similar to YPO3133 (57.8%25 identity in 1044 aa overlap) and to YPO3043 (58.4%25 identity in 1035 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:L11616;product=multidrug efflux protein;protein_id=CAL22070.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3888295	3891366	.	-	.	ID=id8373;Note=Pfam match to entry PF00873 ACR_tran%2C AcrB/AcrD/AcrF family%2C score 1637.30%2C E-value 0;gbkey=misc_feature;inference=protein motif:PF00873
AL590842.1	EMBL	sequence_feature	3888298	3888363	.	-	.	ID=id8374;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3888394	3888459	.	-	.	ID=id8375;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3888619	3888684	.	-	.	ID=id8376;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3888697	3888762	.	-	.	ID=id8377;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3889483	3889548	.	-	.	ID=id8378;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3889684	3889749	.	-	.	ID=id8379;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3889891	3889956	.	-	.	ID=id8380;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3889987	3890052	.	-	.	ID=id8381;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3890125	3890190	.	-	.	ID=id8382;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3890203	3890268	.	-	.	ID=id8383;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3890290	3890346	.	-	.	ID=id8384;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3891289	3891354	.	-	.	ID=id8385;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3891373	3892533	.	-	.	ID=gene3427;Name=YPO3483;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3483
AL590842.1	EMBL	CDS	3891373	3892533	.	-	0	ID=cds3380;Parent=gene3427;Dbxref=GOA:Q7CKI0,InterPro:IPR006143,UniProtKB/TrEMBL:Q7CKI0,NCBI_GP:CAL22071.1;Name=CAL22071.1;Note=Similar to Escherichia coli acriflavin resistance protein A precursor AcrA or MtcA or Lir SW:ACRA_ECOLI (P31223) (397 aa) fasta scores: E(): 0%2C 49.4%25 id in 360 aa%2Cand to Escherichia coli acriflavin resistance protein E precursor AcrE or EnvC SW:ACRE_ECOLI (P24180) (385 aa) fasta scores: E(): 0%2C 50.1%25 id in 353 aa. Similar to YPO3132 (50.0%25 identity in 372 aa overlap);gbkey=CDS;product=multidrug efflux protein;protein_id=CAL22071.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3891481	3892368	.	-	.	ID=id8386;Note=Pfam match to entry PF00529 HlyD%2C HlyD family secretion protein%2C score 231.80%2C E-value 1e-65;gbkey=misc_feature;inference=protein motif:PF00529
AL590842.1	EMBL	sequence_feature	3892483	3892515	.	-	.	ID=id8387;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	3893041	3894096	.	+	.	ID=gene3428;Name=YPO3484;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3484
AL590842.1	EMBL	CDS	3893041	3894096	.	+	0	ID=cds3381;Parent=gene3428;Dbxref=GOA:Q7CKI1,InterPro:IPR011251,InterPro:IPR019949,UniProtKB/TrEMBL:Q7CKI1,NCBI_GP:CAL22072.1;Name=CAL22072.1;Note=Similar to Escherichia coli hypothetical protein YhbW SW:YHBW_ECOLI (P45529) (335 aa) fasta scores: E(): 0%2C70.4%25 id in 335 aa%2C and to Bacillus subtilis hypothetical protein YvbT SW:YVBT_BACSU (O32254) (336 aa) fasta scores: E(): 0%2C 55.5%25 id in 335 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL22072.1;transl_table=11
AL590842.1	EMBL	gene	3894351	3894662	.	-	.	ID=gene3429;Name=YPO3485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3485
AL590842.1	EMBL	CDS	3894351	3894662	.	-	0	ID=cds3382;Parent=gene3429;Dbxref=GOA:Q7CKI2,InterPro:IPR001387,InterPro:IPR010982,UniProtKB/TrEMBL:Q7CKI2,NCBI_GP:CAL22073.1;Name=CAL22073.1;Note=Similar to Bacteriophage N15 gene 48 Gp48 TR:O64356 (EMBL:AF064539) (95 aa) fasta scores: E(): 0.046%2C 30.2%25 id in 86 aa%2C and to Haemophilus influenzae hypothetical protein HI0659 SW:Y659_HAEIN (P44030) (98 aa) fasta scores: E(): 0.015%2C 28.2%25 id in 78 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF064539;product=putative transcriptional regulatory protein;protein_id=CAL22073.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3894381	3894545	.	-	.	ID=id8388;Note=Pfam match to entry PF01381 HTH_3%2C Helix-turn-helix%2Cscore 51.50%2C E-value 1.9e-11;gbkey=misc_feature;inference=protein motif:PF01381
AL590842.1	EMBL	sequence_feature	3894453	3894518	.	-	.	ID=id8389;Note=Predicted helix-turn-helix motif with score 1996 (+5.99 SD) at aa 49-70%2C sequence LTQVDIAKRIGVSRQAISKFEK;gbkey=misc_feature
AL590842.1	EMBL	gene	3894686	3895054	.	-	.	ID=gene3430;Name=YPO3486;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3486
AL590842.1	EMBL	CDS	3894686	3895054	.	-	0	ID=cds3383;Parent=gene3430;Dbxref=InterPro:IPR009241,UniProtKB/TrEMBL:Q7CKI3,NCBI_GP:CAL22074.1;Name=CAL22074.1;Note=Similar to Haemophilus influenzae hypothetical protein HI0660 SW:Y660_HAEIN (P44031) (119 aa) fasta scores: E(): 0.52%2C 31.1%25 id in 90 aa%2C and to Bacteriophage N15 gene 49 GP49 TR:O64357 (EMBL:AF064539) (103 aa) fasta scores: E(): 0.085%2C 27.7%25 id in 94 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF064539;product=conserved hypothetical protein;protein_id=CAL22074.1;transl_table=11
AL590842.1	EMBL	gene	3895097	3895270	.	-	.	ID=gene3431;Name=YPO3487;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3487
AL590842.1	EMBL	CDS	3895097	3895270	.	-	0	ID=cds3384;Parent=gene3431;Dbxref=UniProtKB/TrEMBL:Q7CKI4,NCBI_GP:CAL22075.1;Name=CAL22075.1;Note=no significant database matches. doubtful CDS. Very low %25GC content;gbkey=CDS;product=putative membrane protein;protein_id=CAL22075.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3895166	3895231	.	-	.	ID=id8390;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3895290	3897284	.	-	.	ID=gene3432;Name=csdA;gbkey=Gene;gene=csdA;gene_biotype=protein_coding;gene_synonym=deaD,mssB;locus_tag=YPO3488
AL590842.1	EMBL	CDS	3895290	3897284	.	-	0	ID=cds3385;Parent=gene3432;Dbxref=GOA:Q0WBG1,InterPro:IPR000629,InterPro:IPR001650,InterPro:IPR005580,InterPro:IPR011545,InterPro:IPR014001,InterPro:IPR014014,InterPro:IPR021046,InterPro:IPR027417,InterPro:IPR028618,UniProtKB/TrEMBL:Q0WBG1,NCBI_GP:CAL22076.1;Name=CAL22076.1;Note=Similar to Escherichia coli cold-shock dead-box protein A DeaD or CsdA or MssB SW:DEAD_ECOLI (P23304) (646 aa) fasta scores: E(): 0%2C 81.1%25 id in 667 aa%2C and to Klebsiella pneumoniae cold-shock dead-box protein A DeaD or CsdA SW:DEAD_KLEPN (P33906) (659 aa) fasta scores: E(): 0%2C81.1%25 id in 667 aa;gbkey=CDS;gene=csdA;product=cold-shock dead-box protein A;protein_id=CAL22076.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3896259	3896504	.	-	.	ID=id8391;Note=Pfam match to entry PF00271 helicase_C%2C Helicases conserved C-terminal domain%2C score 122.20%2C E-value 9.5e-33;gbkey=misc_feature;gene=csdA;inference=protein motif:PF00271
AL590842.1	EMBL	sequence_feature	3896613	3897227	.	-	.	ID=id8392;Note=Pfam match to entry PF00270 DEAD%2C DEAD/DEAH box helicase%2C score 230.50%2C E-value 6e-72;gbkey=misc_feature;gene=csdA;inference=protein motif:PF00270
AL590842.1	EMBL	sequence_feature	3896796	3896822	.	-	.	ID=id8393;Note=PS00039 DEAD-box subfamily ATP-dependent helicases signature.;gbkey=misc_feature;gene=csdA;inference=protein motif:ProSite:PS00039
AL590842.1	EMBL	sequence_feature	3897111	3897134	.	-	.	ID=id8394;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=csdA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3897471	3898355	.	-	.	ID=gene3433;Name=nlpI;gbkey=Gene;gene=nlpI;gene_biotype=protein_coding;locus_tag=YPO3489
AL590842.1	EMBL	CDS	3897471	3898355	.	-	0	ID=cds3386;Parent=gene3433;Dbxref=GOA:Q7CKI5,InterPro:IPR001440,InterPro:IPR011990,InterPro:IPR013026,InterPro:IPR019734,InterPro:IPR023605,NCBI_GP:CAL22077.1;Name=CAL22077.1;Note=Similar to Escherichia coli lipoprotein NlpI precursor SW:NLPI_ECOLI (P39833) (294 aa) fasta scores: E(): 0%2C 87.1%25 id in 294 aa;gbkey=CDS;gene=nlpI;product=lipoprotein NlpI;protein_id=CAL22077.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3897867	3897968	.	-	.	ID=id8395;Note=Pfam match to entry PF00515 TPR%2C TPR Domain%2C score 0.10%2C E-value 46;gbkey=misc_feature;gene=nlpI;inference=protein motif:PF00515
AL590842.1	EMBL	sequence_feature	3897969	3898070	.	-	.	ID=id8396;Note=Pfam match to entry PF00515 TPR%2C TPR Domain%2C score 32.70%2C E-value 8.3e-06;gbkey=misc_feature;gene=nlpI;inference=protein motif:PF00515
AL590842.1	EMBL	sequence_feature	3898071	3898172	.	-	.	ID=id8397;Note=Pfam match to entry PF00515 TPR%2C TPR Domain%2C score 26.00%2C E-value 0.00088;gbkey=misc_feature;gene=nlpI;inference=protein motif:PF00515
AL590842.1	EMBL	sequence_feature	3898299	3898331	.	-	.	ID=id8398;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=nlpI;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	3898480	3900597	.	-	.	ID=gene3434;Name=pnp;gbkey=Gene;gene=pnp;gene_biotype=protein_coding;locus_tag=YPO3490
AL590842.1	EMBL	CDS	3898480	3900597	.	-	0	ID=cds3387;Parent=gene3434;Dbxref=GOA:Q0WBF9,InterPro:IPR001247,InterPro:IPR003029,InterPro:IPR004087,InterPro:IPR004088,InterPro:IPR012162,InterPro:IPR012340,InterPro:IPR015847,InterPro:IPR015848,InterPro:IPR020568,InterPro:IPR022967,InterPro:IPR027408,NCBI_GP:CAL22078.1;Name=CAL22078.1;Note=Similar to Escherichia coli polyribonucleotide nucleotidyltransferase Pnp SW:PNP_ECOLI (P05055) (711 aa) fasta scores: E(): 0%2C 88.4%25 id in 706 aa%2C and to Yersinia enterocolitica polyribonucleotide nucleotidyltransferase Pnp SW:PNP_YEREN (O34275) (706 aa) fasta scores: E(): 0%2C96.7%25 id in 704 aa;gbkey=CDS;gene=pnp;product=polyribonucleotide nucleotidyltransferase;protein_id=CAL22078.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3898528	3898746	.	-	.	ID=id8399;Note=Pfam match to entry PF00575 S1%2C S1 RNA binding domain%2C score 95.80%2C E-value 8.2e-25;gbkey=misc_feature;gene=pnp;inference=protein motif:PF00575
AL590842.1	EMBL	sequence_feature	3898789	3898929	.	-	.	ID=id8400;Note=Pfam match to entry PF00013 KH-domain%2C KH domain%2Cscore 47.10%2C E-value 4e-10;gbkey=misc_feature;gene=pnp;inference=protein motif:PF00013
AL590842.1	EMBL	sequence_feature	3899011	3899655	.	-	.	ID=id8401;Note=Pfam match to entry PF01138 RNase_PH%2C 3' exoribonuclease family%2C score 301.60%2C E-value 9.7e-87;gbkey=misc_feature;gene=pnp;inference=protein motif:PF01138
AL590842.1	EMBL	sequence_feature	3899965	3900588	.	-	.	ID=id8402;Note=Pfam match to entry PF01138 RNase_PH%2C 3' exoribonuclease family%2C score 235.90%2C E-value 5.9e-67;gbkey=misc_feature;gene=pnp;inference=protein motif:PF01138
AL590842.1	EMBL	sequence_feature	3900824	3902282	.	-	.	ID=id8403;Note=IS1397-like insertion element: IS1661.;gbkey=misc_feature
AL590842.1	EMBL	INVERTED	3900824	3900855	.	+	.	ID=id8404;Note=Inverted repeat for IS1661 insertion element;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	3900864	3901649	.	-	.	ID=gene3435;Name=YPO3491;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3491
AL590842.1	EMBL	CDS	3900864	3901649	.	-	0	ID=cds3388;Parent=gene3435;Dbxref=GOA:Q7CKI6,InterPro:IPR001584,InterPro:IPR012337,InterPro:IPR025948,UniProtKB/TrEMBL:Q7CKI6,NCBI_GP:CAL22079.1;Name=CAL22079.1;Note=Similar to Escherichia coli insertion sequence IS1397 transposase%2C OrfB TR:Q47310 (EMBL:X92970) (240 aa) fasta scores: E(): 0%2C 53.0%25 id in 234 aa;gbkey=CDS;inference=similar to sequence:INSDC:X92970;product=transposase for insertion sequence IS1661;protein_id=CAL22079.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3900882	3901361	.	-	.	ID=id8405;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 141.50%2C E-value 9.6e-40;gbkey=misc_feature;inference=protein motif:PF00665
AL590842.1	EMBL	gene	3901703	3902218	.	-	.	ID=gene3436;Name=YPO3492;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3492
AL590842.1	EMBL	CDS	3901703	3902218	.	-	0	ID=cds3389;Parent=gene3436;Dbxref=GOA:Q74RD6,InterPro:IPR009057,InterPro:IPR010921,InterPro:IPR011991,UniProtKB/TrEMBL:Q74RD6,NCBI_GP:CAL22080.1;Name=CAL22080.1;Note=Similar to Escherichia coli insertion element IS1397 OrfA hypothetical 20.1 kDa protein SW:YI9A_ECOLI (Q47309) (173 aa) fasta scores: E(): 2.3e-20%2C 39.6%25 id in 169 aa;gbkey=CDS;product=insertion element IS1661 DNA-binding protein;protein_id=CAL22080.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3902096	3902161	.	-	.	ID=id8406;Note=Predicted helix-turn-helix motif with score 1691 (+4.95 SD) at aa 20-41%2C sequence ATLRETARQFSVGKSPLTRWIR;gbkey=misc_feature
AL590842.1	EMBL	INVERTED	3902251	3902282	.	-	.	ID=id8407;Note=Inverted repeat for IS1661 insertion element;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	3902305	3902574	.	-	.	ID=gene3437;Name=rpsO;gbkey=Gene;gene=rpsO;gene_biotype=protein_coding;gene_synonym=secC;locus_tag=YPO3493
AL590842.1	EMBL	CDS	3902305	3902574	.	-	0	ID=cds3390;Parent=gene3437;Dbxref=GOA:Q8ZBC5,InterPro:IPR000589,InterPro:IPR005290,InterPro:IPR009068,NCBI_GP:CAL22081.1;Name=CAL22081.1;Note=Similar to Escherichia coli 30S ribosomal protein S15 RpsO or SecC SW:RS15_ECOLI (P02371) (88 aa) fasta scores: E(): 9.3e-30%2C 86.4%25 id in 88 aa%2C and to Yersinia enterocolitica 30S ribosomal protein S15 RpsO SW:RS15_YEREN (O34274) (88 aa) fasta scores: E(): 4.2e-32%2C 94.3%25 id in 88 aa;gbkey=CDS;gene=rpsO;product=30S ribosomal protein S15;protein_id=CAL22081.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3902311	3902508	.	-	.	ID=id8408;Note=Pfam match to entry PF00312 Ribosomal_S15%2C Ribosomal protein S15%2C score 125.20%2C E-value 5e-34;gbkey=misc_feature;gene=rpsO;inference=protein motif:PF00312
AL590842.1	EMBL	sequence_feature	3902368	3902460	.	-	.	ID=id8409;Note=PS00362 Ribosomal protein S15 signature.;gbkey=misc_feature;gene=rpsO;inference=protein motif:ProSite:PS00362
AL590842.1	EMBL	gene	3902696	3903670	.	-	.	ID=gene3438;Name=p35;gbkey=Gene;gene=p35;gene_biotype=protein_coding;gene_synonym=truB;locus_tag=YPO3494
AL590842.1	EMBL	CDS	3902696	3903670	.	-	0	ID=cds3391;Parent=gene3438;Dbxref=GOA:Q8ZBC4,InterPro:IPR002501,InterPro:IPR014780,InterPro:IPR015240,InterPro:IPR015947,InterPro:IPR020103,NCBI_GP:CAL22082.1;Name=CAL22082.1;Note=Similar to Escherichia coli tRNA pseudouridine synthase B TruB or P35 SW:TRUB_ECOLI (P09171) (314 aa) fasta scores: E(): 0%2C 72.0%25 id in 311 aa%2C and to Yersinia enterocolitica tRNA pseudouridine synthase B TruB SW:TRUB_YEREN (O34273) (309 aa) fasta scores: E(): 0%2C 91.4%25 id in 301 aa;gbkey=CDS;gene=p35;product=tRNA pseudouridine synthase B;protein_id=CAL22082.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3903131	3903583	.	-	.	ID=id8410;Note=Pfam match to entry PF01509 TruB_N%2C TruB family pseudouridylate synthase (N terminal domain)%2C score 319.50%2CE-value 3.9e-92;gbkey=misc_feature;gene=p35;inference=protein motif:PF01509
AL590842.1	EMBL	sequence_feature	3903185	3903226	.	-	.	ID=id8411;Note=PS01109 Ribosomal protein L10 signature.;gbkey=misc_feature;gene=p35;inference=protein motif:ProSite:PS01109
AL590842.1	EMBL	gene	3903670	3904080	.	-	.	ID=gene3439;Name=p15B;gbkey=Gene;gene=p15B;gene_biotype=protein_coding;gene_synonym=rbfA;locus_tag=YPO3495
AL590842.1	EMBL	CDS	3903670	3904080	.	-	0	ID=cds3392;Parent=gene3439;Dbxref=GOA:Q8ZBC3,InterPro:IPR000238,InterPro:IPR015946,InterPro:IPR020053,InterPro:IPR023799,NCBI_GP:CAL22083.1;Name=CAL22083.1;Note=Similar to Escherichia coli ribosome-binding factor A Rbfa or P15B SW:RBFA_ECOLI (P09170) (132 aa) fasta scores: E(): 0%2C 75.6%25 id in 135 aa%2C and to Yersinia enterocolitica ribosome-binding factor A RbfA SW:RBFA_YEREN (O34272) (133 aa) fasta scores: E(): 0%2C 98.5%25 id in 133 aa;gbkey=CDS;gene=p15B;product=ribosome-binding factor A;protein_id=CAL22083.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3903733	3904062	.	-	.	ID=id8412;Note=Pfam match to entry PF02033 RBFA%2C Ribosome-binding factor A%2C score 182.00%2C E-value 9.7e-51;gbkey=misc_feature;gene=p15B;inference=protein motif:PF02033
AL590842.1	EMBL	sequence_feature	3903772	3903837	.	-	.	ID=id8413;Note=PS01319 Ribosome-binding factor A signature.;gbkey=misc_feature;gene=p15B;inference=protein motif:ProSite:PS01319
AL590842.1	EMBL	gene	3904146	3906800	.	-	.	ID=gene3440;Name=infB;gbkey=Gene;gene=infB;gene_biotype=protein_coding;gene_synonym=ssyG;locus_tag=YPO3496
AL590842.1	EMBL	CDS	3904146	3906800	.	-	0	ID=cds3393;Parent=gene3440;Dbxref=GOA:Q8ZBC2,InterPro:IPR000178,InterPro:IPR000795,InterPro:IPR004161,InterPro:IPR005225,InterPro:IPR006847,InterPro:IPR009000,InterPro:IPR009061,InterPro:IPR013575,InterPro:IPR015760,InterPro:IPR023115,InterPro:IPR027417,NCBI_GP:CAL22084.1;Name=CAL22084.1;Note=Similar to Escherichia coli translation initiation factor IF-2 InfB or SsyG SW:IF2_ECOLI (P02995) (890 aa) fasta scores: E(): 0%2C 82.8%25 id in 897 aa%2C and to Salmonella typhimurium translation initiation factor IF-2 InfB SW:IF2_SALTY (Q9ZF31) (892 aa) fasta scores: E(): 0%2C 82.9%25 id in 900 aa;gbkey=CDS;gene=infB;product=translation initiation factor IF2-2;protein_id=CAL22084.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3904176	3904577	.	-	.	ID=id8414;Note=Pfam match to entry PF02131 IF2%2C Initiation factor 2%2C score 303.60%2C E-value 2.4e-87;gbkey=misc_feature;gene=infB;inference=protein motif:PF02131
AL590842.1	EMBL	sequence_feature	3904233	3904301	.	-	.	ID=id8415;Note=PS01176 Initiation factor 2 signature.;gbkey=misc_feature;gene=infB;inference=protein motif:ProSite:PS01176
AL590842.1	EMBL	sequence_feature	3904623	3905654	.	-	.	ID=id8416;Note=Pfam match to entry PF00009 GTP_EFTU%2C Elongation factor Tu family%2C score 251.60%2C E-value 7.1e-74;gbkey=misc_feature;gene=infB;inference=protein motif:PF00009
AL590842.1	EMBL	sequence_feature	3905604	3905627	.	-	.	ID=id8417;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=infB;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3906825	3908312	.	-	.	ID=gene3441;Name=nusA;gbkey=Gene;gene=nusA;gene_biotype=protein_coding;locus_tag=YPO3497
AL590842.1	EMBL	CDS	3906825	3908312	.	-	0	ID=cds3394;Parent=gene3441;Dbxref=GOA:Q0WBF2,InterPro:IPR003029,InterPro:IPR004087,InterPro:IPR004088,InterPro:IPR009019,InterPro:IPR010213,InterPro:IPR010214,InterPro:IPR010995,InterPro:IPR012340,InterPro:IPR013735,InterPro:IPR015946,InterPro:IPR022967,InterPro:IPR025249,InterPro:IPR028620,UniProtKB/TrEMBL:Q0WBF2,NCBI_GP:CAL22085.1;Name=CAL22085.1;Note=Similar to Escherichia coli N utilization substance protein A NusA SW:NUSA_ECOLI (P03003) (495 aa) fasta scores: E(): 0%2C 88.5%25 id in 495 aa%2C and to Salmonella typhimurium N utilization substance protein A NusA SW:NUSA_SALTY (P37430) (500 aa) fasta scores: E(): 0%2C 86.2%25 id in 500 aa;gbkey=CDS;gene=nusA;product=N utilization substance protein A;protein_id=CAL22085.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3907245	3907397	.	-	.	ID=id8418;Note=Pfam match to entry PF00013 KH-domain%2C KH domain%2Cscore 10.10%2C E-value 0.28;gbkey=misc_feature;gene=nusA;inference=protein motif:PF00013
AL590842.1	EMBL	sequence_feature	3907719	3907922	.	-	.	ID=id8419;Note=Pfam match to entry PF00575 S1%2C S1 RNA binding domain%2C score 30.30%2C E-value 9.4e-07;gbkey=misc_feature;gene=nusA;inference=protein motif:PF00575
AL590842.1	EMBL	gene	3908334	3908792	.	-	.	ID=gene3442;Name=YPO3498;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3498
AL590842.1	EMBL	CDS	3908334	3908792	.	-	0	ID=cds3395;Parent=gene3442;Dbxref=GOA:Q8ZBC0,InterPro:IPR003728,InterPro:IPR028989,InterPro:IPR028998,NCBI_GP:CAL22086.1;Name=CAL22086.1;Note=Similar to Escherichia coli hypothetical protein YhbC SW:YHBC_ECOLI (P03843) (140 aa) fasta scores: E(): 0%2C90.0%25 id in 140 aa%2C and to Vibrio cholerae hypothetical protein VC0641 TR:Q9KU82 (EMBL:AE004150) (151 aa) fasta scores: E(): 0%2C 64.2%25 id in 151 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004150;product=conserved hypothetical protein;protein_id=CAL22086.1;transl_table=11
AL590842.1	EMBL	tRNA	3909002	3909078	.	-	.	ID=rna76;Note=tRNA Met anticodon CAT%2C Cove score 86.07;gbkey=tRNA;product=tRNA-Met
AL590842.1	EMBL	exon	3909002	3909078	.	-	.	ID=id8420;Parent=rna76;Note=tRNA Met anticodon CAT%2C Cove score 86.07;gbkey=tRNA;product=tRNA-Met
AL590842.1	EMBL	tRNA	3909139	3909225	.	-	.	ID=rna77;Note=tRNA Leu anticodon GAG%2C Cove score 68.10;gbkey=tRNA;product=tRNA-Leu
AL590842.1	EMBL	exon	3909139	3909225	.	-	.	ID=id8421;Parent=rna77;Note=tRNA Leu anticodon GAG%2C Cove score 68.10;gbkey=tRNA;product=tRNA-Leu
AL590842.1	EMBL	gene	3909318	3909653	.	-	.	ID=gene3443;Name=secG;gbkey=Gene;gene=secG;gene_biotype=protein_coding;locus_tag=YPO3499
AL590842.1	EMBL	CDS	3909318	3909653	.	-	0	ID=cds3396;Parent=gene3443;Dbxref=GOA:Q7CKI9,InterPro:IPR004692,UniProtKB/TrEMBL:Q7CKI9,NCBI_GP:CAL22087.1;Name=CAL22087.1;Note=Similar to Escherichia coli protein-export membrane protein SecG SW:SECG_ECOLI (P33582) (110 aa) fasta scores: E(): 1.8e-30%2C 79.1%25 id in 110 aa%2C and to Vibrio cholerae preprotein translocase SecG subunit Vc0640 TR:Q9KU83 (EMBL:AE004150) (111 aa) fasta scores: E(): 3.1e-20%2C 54.9%25 id in 113 aa;gbkey=CDS;gene=secG;inference=similar to sequence:INSDC:AE004150;product=protein-export membrane protein;protein_id=CAL22087.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3909444	3909500	.	-	.	ID=id8422;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=secG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3909588	3909638	.	-	.	ID=id8423;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=secG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3909876	3911216	.	-	.	ID=gene3444;Name=mrsA;gbkey=Gene;gene=mrsA;gene_biotype=protein_coding;locus_tag=YPO3500
AL590842.1	EMBL	CDS	3909876	3911216	.	-	0	ID=cds3397;Parent=gene3444;Dbxref=GOA:Q8ZBB8,InterPro:IPR005841,InterPro:IPR005843,InterPro:IPR005844,InterPro:IPR005845,InterPro:IPR005846,InterPro:IPR006352,InterPro:IPR016055,InterPro:IPR016066,NCBI_GP:CAL22088.1;Name=CAL22088.1;Note=Similar to Escherichia coli MrsA protein SW:MRSA_ECOLI (P31120) (445 aa) fasta scores: E(): 0%2C 85.6%25 id in 445 aa%2C and to Vibrio cholerae phosphoglucomutase/phosphomannomutase family protein MrsA Vc0639 TR:Q9KU84 (EMBL:AE004149) (446 aa) fasta scores: E(): 0%2C 75.0%25 id in 444 aa;gbkey=CDS;gene=mrsA;inference=similar to sequence:INSDC:AE004149;product=probable phosphoglucomutase/phosphomannomutase;protein_id=CAL22088.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3909924	3911210	.	-	.	ID=id8424;Note=Pfam match to entry PF00408 PGM_PMM%2CPhosphoglucomutase/phosphomannomutase%2C score 635.70%2CE-value 2.5e-187;gbkey=misc_feature;gene=mrsA;inference=protein motif:PF00408
AL590842.1	EMBL	sequence_feature	3910887	3910931	.	-	.	ID=id8425;Note=PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature.;gbkey=misc_feature;gene=mrsA;inference=protein motif:ProSite:PS00710
AL590842.1	EMBL	gene	3911226	3912059	.	-	.	ID=gene3445;Name=dhpS;gbkey=Gene;gene=dhpS;gene_biotype=protein_coding;gene_synonym=folP;locus_tag=YPO3501
AL590842.1	EMBL	CDS	3911226	3912059	.	-	0	ID=cds3398;Parent=gene3445;Dbxref=GOA:Q7CKJ1,InterPro:IPR000489,InterPro:IPR006390,InterPro:IPR011005,UniProtKB/TrEMBL:Q7CKJ1,NCBI_GP:CAL22089.1;Name=CAL22089.1;Note=Similar to Escherichia coli dihydropteroate synthase FolP or DhpS SW:DHPS_ECOLI (P26282) (282 aa) fasta scores: E(): 0%2C 75.0%25 id in 276 aa%2C and to Haemophilus influenzae dihydropteroate synthase (FolP-a or Hi1336) and (FolP-b or Hi1464) SW:DHPS_HAEIN (P43776) (275 aa) fasta scores: E(): 0%2C 57.8%25 id in 275 aa;gbkey=CDS;gene=dhpS;product=dihydropteroate synthase;protein_id=CAL22089.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3911247	3912008	.	-	.	ID=id8426;Note=Pfam match to entry PF00809 DHPS%2C Dihydropteroate synthase%2C score 511.60%2C E-value 5.7e-150;gbkey=misc_feature;gene=dhpS;inference=protein motif:PF00809
AL590842.1	EMBL	sequence_feature	3911868	3911909	.	-	.	ID=id8427;Note=PS00793 Dihydropteroate synthase signature 2.;gbkey=misc_feature;gene=dhpS;inference=protein motif:ProSite:PS00793
AL590842.1	EMBL	sequence_feature	3911964	3912011	.	-	.	ID=id8428;Note=PS00792 Dihydropteroate synthase signature 1.;gbkey=misc_feature;gene=dhpS;inference=protein motif:ProSite:PS00792
AL590842.1	EMBL	gene	3912179	3914113	.	-	.	ID=gene3446;Name=ftsH;gbkey=Gene;gene=ftsH;gene_biotype=protein_coding;gene_synonym=hflB,mrsC,tolZ;locus_tag=YPO3502
AL590842.1	EMBL	CDS	3912179	3914113	.	-	0	ID=cds3399;Parent=gene3446;Dbxref=GOA:Q0WBE7,InterPro:IPR000642,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR003960,InterPro:IPR005936,InterPro:IPR011546,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WBE7,NCBI_GP:CAL22090.1;Name=CAL22090.1;Note=Similar to Escherichia coli cell division protein FtsH or HflB or MrsC or TolZ SW:FTSH_ECOLI (P28691) (644 aa) fasta scores: E(): 0%2C 91.1%25 id in 644 aa%2C and to Vibrio cholerae cell division protein FtsH or Vc0637 TR:Q9KU86 (EMBL:AE004149) (651 aa) fasta scores: E(): 0%2C 78.4%25 id in 644 aa;gbkey=CDS;gene=ftsH;inference=similar to sequence:INSDC:AE004149;product=cell division protein;protein_id=CAL22090.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3912338	3912976	.	-	.	ID=id8429;Note=Pfam match to entry PF01434 Peptidase_M41%2C Peptidase family M41%2C score 435.90%2C E-value 3.6e-127;gbkey=misc_feature;gene=ftsH;inference=protein motif:PF01434
AL590842.1	EMBL	sequence_feature	3912992	3913555	.	-	.	ID=id8430;Note=Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA)%2C score 335.70%2CE-value 5.3e-97;gbkey=misc_feature;gene=ftsH;inference=protein motif:PF00004
AL590842.1	EMBL	sequence_feature	3913187	3913243	.	-	.	ID=id8431;Note=PS00674 AAA-protein family signature.;gbkey=misc_feature;gene=ftsH;inference=protein motif:ProSite:PS00674
AL590842.1	EMBL	sequence_feature	3913517	3913540	.	-	.	ID=id8432;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ftsH;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3913703	3913726	.	-	.	ID=id8433;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ftsH;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3913757	3913822	.	-	.	ID=id8434;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=ftsH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3914045	3914101	.	-	.	ID=id8435;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=ftsH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3914170	3914799	.	-	.	ID=gene3447;Name=ftsJ;gbkey=Gene;gene=ftsJ;gene_biotype=protein_coding;gene_synonym=mrsF,rrmJ;locus_tag=YPO3503
AL590842.1	EMBL	CDS	3914170	3914799	.	-	0	ID=cds3400;Parent=gene3447;Dbxref=GOA:Q8ZBB5,InterPro:IPR002877,InterPro:IPR004512,InterPro:IPR015507,InterPro:IPR029063,NCBI_GP:CAL22091.1;Name=CAL22091.1;Note=Similar to Escherichia coli ribosomal RNA large subunit methyltransferase J RrmJ or FtsJ or MrsF SW:RRMJ_ECOLI (P28692) (209 aa) fasta scores: E(): 0%2C 91.8%25 id in 208 aa%2C and to Haemophilus influenzae ribosomal RNA large subunit methyltransferase J RrmJ or FtsJ or Hi1334 SW:RRMJ_HAEIN (P45162) (209 aa) fasta scores: E(): 0%2C 79.8%25 id in 208 aa;gbkey=CDS;gene=ftsJ;product=ribosomal RNA large subunit methyltransferase J;protein_id=CAL22091.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3914173	3914757	.	-	.	ID=id8436;Note=Pfam match to entry PF01728 FtsJ%2C FtsJ cell division protein%2C score 364.20%2C E-value 1.4e-105;gbkey=misc_feature;gene=ftsJ;inference=protein motif:PF01728
AL590842.1	EMBL	gene	3914946	3915239	.	+	.	ID=gene3448;Name=YPO3504;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3504
AL590842.1	EMBL	CDS	3914946	3915239	.	+	0	ID=cds3401;Parent=gene3448;Dbxref=GOA:Q7CKJ2,InterPro:IPR001890,InterPro:IPR017924,UniProtKB/TrEMBL:Q7CKJ2,NCBI_GP:CAL22092.1;Name=CAL22092.1;Note=Similar to Escherichia coli hypothetical protein YhbY SW:YHBY_ECOLI (P42550) (97 aa) fasta scores: E(): 3.2e-31%2C 80.4%25 id in 97 aa%2C and to Vibrio cholerae hypothetical protein VC0635 TR:Q9KU88 (EMBL:AE004149) (98 aa) fasta scores: E(): 1e-27%2C 73.2%25 id in 97 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004149;product=conserved hypothetical protein;protein_id=CAL22092.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3914991	3915203	.	+	.	ID=id8437;Note=Pfam match to entry PF01985 UPF0044%2C Uncharacterised protein family UPF0044%2C score 28.10%2C E-value 0.0002;gbkey=misc_feature;inference=protein motif:PF01985
AL590842.1	EMBL	gene	3915367	3915843	.	-	.	ID=gene3449;Name=greA;gbkey=Gene;gene=greA;gene_biotype=protein_coding;locus_tag=YPO3505
AL590842.1	EMBL	CDS	3915367	3915843	.	-	0	ID=cds3402;Parent=gene3449;Dbxref=GOA:Q8ZBB3,InterPro:IPR001437,InterPro:IPR006359,InterPro:IPR018151,InterPro:IPR022691,InterPro:IPR023459,InterPro:IPR028624,NCBI_GP:CAL22093.1;Name=CAL22093.1;Note=Similar to Escherichia coli transcription elongation factor GreA SW:GREA_ECOLI (P21346) (158 aa) fasta scores: E(): 0%2C 84.2%25 id in 158 aa%2C and to Pasteurella multocida GreA TR:AAK02799 (EMBL:AE006109) (158 aa) fasta scores: E(): 0%2C 77.7%25 id in 157 aa;gbkey=CDS;gene=greA;inference=similar to sequence:INSDC:AE006109;product=transcription elongation factor;protein_id=CAL22093.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3915370	3915828	.	-	.	ID=id8438;Note=Pfam match to entry PF01272 GreA_GreB%2C Prokaryotic transcription elongation factor%2C GreA/GreB%2C score 334.20%2CE-value 1.5e-96;gbkey=misc_feature;gene=greA;inference=protein motif:PF01272
AL590842.1	EMBL	sequence_feature	3915433	3915483	.	-	.	ID=id8439;Note=PS00830 Prokaryotic transcription elongation factors signature 2.;gbkey=misc_feature;gene=greA;inference=protein motif:ProSite:PS00830
AL590842.1	EMBL	sequence_feature	3915700	3915825	.	-	.	ID=id8440;Note=PS00829 Prokaryotic transcription elongation factors signature 1.;gbkey=misc_feature;gene=greA;inference=protein motif:ProSite:PS00829
AL590842.1	EMBL	gene	3916101	3917549	.	+	.	ID=gene3450;Name=dacB;gbkey=Gene;gene=dacB;gene_biotype=protein_coding;locus_tag=YPO3506
AL590842.1	EMBL	CDS	3916101	3917549	.	+	0	ID=cds3403;Parent=gene3450;Dbxref=GOA:Q7CKJ3,InterPro:IPR000667,InterPro:IPR012338,UniProtKB/TrEMBL:Q7CKJ3,NCBI_GP:CAL22094.1;Name=CAL22094.1;Note=Similar to Escherichia coli penicillin-binding protein 4 precursor DacB SW:PBP4_ECOLI (P24228) (477 aa) fasta scores: E(): 0%2C 79.0%25 id in 482 aa%2C and to Haemophilus influenzae penicillin-binding protein 4 precursor DacB or Hi1330 SW:PBP4_HAEIN (P45161) (479 aa) fasta scores: E(): 0%2C 46.5%25 id in 480 aa;gbkey=CDS;gene=dacB;product=penicillin-binding protein 4 precursor;protein_id=CAL22094.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3916293	3917453	.	+	.	ID=id8441;Note=Pfam match to entry PF02113 Peptidase_S13%2CD-Ala-D-Ala carboxypeptidase 3 (S13) family%2C score 663.80%2CE-value 8.9e-196;gbkey=misc_feature;gene=dacB;inference=protein motif:PF02113
AL590842.1	EMBL	gene	3917555	3918217	.	+	.	ID=gene3451;Name=basR;gbkey=Gene;gene=basR;gene_biotype=protein_coding;gene_synonym=pmrA;locus_tag=YPO3507
AL590842.1	EMBL	CDS	3917555	3918217	.	+	0	ID=cds3404;Parent=gene3451;Dbxref=GOA:Q7CKJ4,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CKJ4,NCBI_GP:CAL22095.1;Name=CAL22095.1;Note=Similar to Escherichia coli transcriptional regulatory protein BasR or PmrA SW:BASR_ECOLI (P30843) (222 aa) fasta scores: E(): 0%2C 56.4%25 id in 218 aa%2C and to Salmonella typhimurium transcriptional regulatory protein BasR or PmrA SW:BASR_SALTY (P36556) (222 aa) fasta scores: E(): 0%2C 56.4%25 id in 218 aa;gbkey=CDS;gene=basR;product=two-component system response regulator;protein_id=CAL22095.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3917555	3917890	.	+	.	ID=id8442;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 134.70%2C E-value 1.7e-36;gbkey=misc_feature;gene=basR;inference=protein motif:PF00072
AL590842.1	EMBL	sequence_feature	3917990	3918193	.	+	.	ID=id8443;Note=Pfam match to entry PF00486 trans_reg_C%2CTranscriptional regulatory protein%2C C terminal%2C score 80.60%2C E-value 8.8e-23;gbkey=misc_feature;gene=basR;inference=protein motif:PF00486
AL590842.1	EMBL	gene	3918214	3919281	.	+	.	ID=gene3452;Name=basS;gbkey=Gene;gene=basS;gene_biotype=protein_coding;gene_synonym=pmrB;locus_tag=YPO3508
AL590842.1	EMBL	CDS	3918214	3919281	.	+	0	ID=cds3405;Parent=gene3452;Dbxref=GOA:Q7CKJ5,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,UniProtKB/TrEMBL:Q7CKJ5,NCBI_GP:CAL22096.1;Name=CAL22096.1;Note=Similar to Escherichia coli sensor protein BasS or PmrB SW:BASS_ECOLI (P30844) (363 aa) fasta scores: E(): 0%2C49.7%25 id in 354 aa%2C and to Salmonella typhimurium sensor protein BasS or PmrB or ParB SW:BASS_SALTY (P36557) (356 aa) fasta scores: E(): 0%2C 50.4%25 id in 349 aa;gbkey=CDS;gene=basS;inference=protein motif:TMHMM:2.0;product=two-component system sensor protein;protein_id=CAL22096.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3918232	3918300	.	+	.	ID=id8444;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=basS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3918400	3918609	.	+	.	ID=id8445;Note=Pfam match to entry PF00672 DUF5%2C HAMP domain%2C score 33.10%2C E-value 6.2e-06;gbkey=misc_feature;gene=basS;inference=protein motif:PF00672
AL590842.1	EMBL	sequence_feature	3918403	3918471	.	+	.	ID=id8446;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=basS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3918649	3919257	.	+	.	ID=id8447;Note=Pfam match to entry PF00512 signal%2C Histidine kinase%2C score 108.70%2C E-value 1.1e-28;gbkey=misc_feature;gene=basS;inference=protein motif:PF00512
AL590842.1	EMBL	sequence_feature	3918853	3918918	.	+	.	ID=id8448;Note=Predicted helix-turn-helix motif with score 988 (+2.55 SD) at aa 214-235%2C sequence PLQEELAEMCELRRQTIQWELP;gbkey=misc_feature;gene=basS
AL590842.1	EMBL	gene	3919376	3920548	.	-	.	ID=gene3453;Name=YPO3509;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3509
AL590842.1	EMBL	CDS	3919376	3920548	.	-	0	ID=cds3406;Parent=gene3453;Dbxref=GOA:Q7CKJ6,InterPro:IPR006073,InterPro:IPR006074,InterPro:IPR006169,InterPro:IPR014100,InterPro:IPR027417,NCBI_GP:CAL22097.1;Name=CAL22097.1;Note=Similar to Escherichia coli hypothetical GTP-binding protein YhbZ SW:YHBZ_ECOLI (P42641) (390 aa) fasta scores: E(): 0%2C 77.7%25 id in 390 aa%2C and to Haemophilus influenzae hypothetical GTP-binding protein HI0877 SW:YHBZ_HAEIN (P44915) (390 aa) fasta scores: E(): 0%2C 71.2%25 id in 389 aa;gbkey=CDS;product=putative GTP-binding protein;protein_id=CAL22097.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3919394	3920503	.	-	.	ID=id8449;Note=Pfam match to entry PF01018 GTP1_OBG%2C GTP1/OBG family%2C score 496.10%2C E-value 1.4e-145;gbkey=misc_feature;inference=protein motif:PF01018
AL590842.1	EMBL	sequence_feature	3919871	3919912	.	-	.	ID=id8450;Note=PS00905 GTP1/OBG family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00905
AL590842.1	EMBL	sequence_feature	3920030	3920053	.	-	.	ID=id8451;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3920549	3921535	.	-	.	ID=gene3454;Name=YPO3510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3510
AL590842.1	EMBL	CDS	3920549	3921535	.	-	0	ID=cds3407;Parent=gene3454;Dbxref=GOA:Q7CKJ7,InterPro:IPR000620,UniProtKB/TrEMBL:Q7CKJ7,NCBI_GP:CAL22098.1;Name=CAL22098.1;Note=Similar to Escherichia coli hypothetical 35.0 kDa protein in dacB-rpmA intergenic region YhbE SW:YHBE_ECOLI (P28636) (321 aa) fasta scores: E(): 0%2C 79.5%25 id in 303 aa%2Cand to Haemophilus influenzae hypothetical protein Hi0878 SW:YHBE_HAEIN (P71360) (306 aa) fasta scores: E(): 0%2C 48.7%25 id in 306 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL22098.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3920630	3920686	.	-	.	ID=id8452;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3920654	3921025	.	-	.	ID=id8453;Note=Pfam match to entry PF00892 DUF6%2C Integral membrane protein DUF6%2C score 44.20%2C E-value 2.9e-09;gbkey=misc_feature;inference=protein motif:PF00892
AL590842.1	EMBL	sequence_feature	3920717	3920782	.	-	.	ID=id8454;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3920819	3920881	.	-	.	ID=id8455;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3920894	3920959	.	-	.	ID=id8456;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3920999	3921064	.	-	.	ID=id8457;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3921077	3921142	.	-	.	ID=id8458;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3921098	3921481	.	-	.	ID=id8459;Note=Pfam match to entry PF00892 DUF6%2C Integral membrane protein DUF6%2C score 101.80%2C E-value 1.4e-26;gbkey=misc_feature;inference=protein motif:PF00892
AL590842.1	EMBL	sequence_feature	3921170	3921220	.	-	.	ID=id8460;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3921251	3921316	.	-	.	ID=id8461;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3921356	3921421	.	-	.	ID=id8462;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3921452	3921514	.	-	.	ID=id8463;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3921623	3921880	.	-	.	ID=gene3455;Name=rpmA;gbkey=Gene;gene=rpmA;gene_biotype=protein_coding;locus_tag=YPO3511
AL590842.1	EMBL	CDS	3921623	3921880	.	-	0	ID=cds3408;Parent=gene3455;Dbxref=GOA:Q8ZBA7,InterPro:IPR001684,InterPro:IPR018261,NCBI_GP:CAL22099.1;Name=CAL22099.1;Note=Similar to Escherichia coli 50S ribosomal protein L27 RpmA SW:RL27_ECOLI (P02427) (84 aa) fasta scores: E(): 5e-31%2C 94.0%25 id in 84 aa%2C and to Vibrio cholerae ribosomal protein L27 Vc0436 TR:Q9KUS9 (EMBL:AE004131) (86 aa) fasta scores: E(): 1.2e-29%2C 91.6%25 id in 83 aa;gbkey=CDS;gene=rpmA;inference=similar to sequence:INSDC:AE004131;product=50S ribosomal protein L27;protein_id=CAL22099.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3921632	3921877	.	-	.	ID=id8464;Note=Pfam match to entry PF01016 Ribosomal_L27%2C Ribosomal L27 protein%2C score 204.30%2C E-value 1.9e-57;gbkey=misc_feature;gene=rpmA;inference=protein motif:PF01016
AL590842.1	EMBL	sequence_feature	3921737	3921781	.	-	.	ID=id8465;Note=PS00831 Ribosomal protein L27 signature.;gbkey=misc_feature;gene=rpmA;inference=protein motif:ProSite:PS00831
AL590842.1	EMBL	gene	3921900	3922211	.	-	.	ID=gene3456;Name=rplU;gbkey=Gene;gene=rplU;gene_biotype=protein_coding;locus_tag=YPO3512
AL590842.1	EMBL	CDS	3921900	3922211	.	-	0	ID=cds3409;Parent=gene3456;Dbxref=GOA:Q0WBD7,InterPro:IPR001787,InterPro:IPR018258,InterPro:IPR028909,NCBI_GP:CAL22100.1;Name=CAL22100.1;Note=Similar to Escherichia coli 50S ribosomal protein L21 RplU SW:RL21_ECOLI (P02422) (103 aa) fasta scores: E(): 0%2C 88.3%25 id in 103 aa%2C and to Vibrio cholerae 50S ribosomal protein L21 RplU or Vc0435 TR:Q9KUT0 (EMBL:AE004131) (103 aa) fasta scores: E(): 0%2C 78.6%25 id in 103 aa;gbkey=CDS;gene=rplU;inference=similar to sequence:INSDC:AE004131;product=50S ribosomal protein L21;protein_id=CAL22100.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3921924	3922211	.	-	.	ID=id8466;Note=Pfam match to entry PF00829 Ribosomal_L21p%2CRibosomal prokaryotic L21 protein%2C score 198.00%2C E-value 1.5e-55;gbkey=misc_feature;gene=rplU;inference=protein motif:PF00829
AL590842.1	EMBL	sequence_feature	3921930	3921998	.	-	.	ID=id8467;Note=PS01169 Ribosomal protein L21 signature.;gbkey=misc_feature;gene=rplU;inference=protein motif:ProSite:PS01169
AL590842.1	EMBL	gene	3922471	3923442	.	+	.	ID=gene3457;Name=cel;gbkey=Gene;gene=cel;gene_biotype=protein_coding;gene_synonym=ispB;locus_tag=YPO3513
AL590842.1	EMBL	CDS	3922471	3923442	.	+	0	ID=cds3410;Parent=gene3457;Dbxref=GOA:Q7CKJ8,InterPro:IPR000092,InterPro:IPR008949,InterPro:IPR017446,UniProtKB/TrEMBL:Q7CKJ8,NCBI_GP:CAL22101.1;Name=CAL22101.1;Note=Similar to Escherichia coli octaprenyl-diphosphate synthase IspB or Cel SW:ISPB_ECOLI (P19641) (323 aa) fasta scores: E(): 0%2C 79.4%25 id in 321 aa%2C and to Vibrio cholerae octaprenyl-diphosphate synthase Vc0434 TR:Q9KUT1 (EMBL:AE004131) (348 aa) fasta scores: E(): 0%2C 72.9%25 id in 321 aa;gbkey=CDS;gene=cel;inference=similar to sequence:INSDC:AE004131;product=octaprenyl-diphosphate synthase;protein_id=CAL22101.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3922561	3923325	.	+	.	ID=id8468;Note=Pfam match to entry PF00348 polyprenyl_synt%2CPolyprenyl synthetases%2C score 385.40%2C E-value 5.7e-112;gbkey=misc_feature;gene=cel;inference=protein motif:PF00348
AL590842.1	EMBL	sequence_feature	3922711	3922755	.	+	.	ID=id8469;Note=PS00723 Polyprenyl synthetases signature 1.;gbkey=misc_feature;gene=cel;inference=protein motif:ProSite:PS00723
AL590842.1	EMBL	sequence_feature	3923077	3923115	.	+	.	ID=id8470;Note=PS00444 Polyprenyl synthetases signature 2.;gbkey=misc_feature;gene=cel;inference=protein motif:ProSite:PS00444
AL590842.1	EMBL	gene	3923539	3923940	.	-	.	ID=gene3458;Name=YPO3514;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3514
AL590842.1	EMBL	CDS	3923539	3923940	.	-	0	ID=cds3411;Parent=gene3458;Dbxref=GOA:Q7CKJ9,InterPro:IPR003314,InterPro:IPR009061,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CKJ9,NCBI_GP:CAL22102.1;Name=CAL22102.1;Note=Similar to Bacteriophage D108 repressor protein CI SW:RPC1_BPD10 (P07040) (174 aa) fasta scores: E(): 1.4e-06%2C33.6%25 id in 110 aa%2C and to the N-terminal region of several transposases;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL22102.1;transl_table=11
AL590842.1	EMBL	gene	3924176	3924370	.	-	.	ID=gene3459;Name=YPO3515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3515
AL590842.1	EMBL	CDS	3924176	3924370	.	-	0	ID=cds3412;Parent=gene3459;Dbxref=UniProtKB/TrEMBL:Q0WBD4,NCBI_GP:CAL22103.1;Name=CAL22103.1;Note=no significant database matches;gbkey=CDS;product=putative exported protein;protein_id=CAL22103.1;transl_table=11
AL590842.1	EMBL	gene	3924779	3925717	.	-	.	ID=gene3460;Name=mdh;gbkey=Gene;gene=mdh;gene_biotype=protein_coding;locus_tag=YPO3516
AL590842.1	EMBL	CDS	3924779	3925717	.	-	0	ID=cds3413;Parent=gene3460;Dbxref=GOA:P61892,InterPro:IPR001236,InterPro:IPR001252,InterPro:IPR001557,InterPro:IPR010097,InterPro:IPR015955,InterPro:IPR016040,InterPro:IPR022383,InterPro:IPR023958,NCBI_GP:CAL22104.1;Name=CAL22104.1;Note=Identical to the previously sequenced Yersinia pestis and Y. pseudotuberculosis malate dehydrogenase Mdh TR:AAG21999 (EMBL:AF282310) (312 aa) fasta scores: E(): 0%2C100.0%25 id in 312 aa%2C and similar to Escherichia coli malate dehydrogenase Mdh SW:MDH_ECOLI (P06994) (312 aa) fasta scores: E(): 0%2C 89.7%25 id in 312 aa;gbkey=CDS;gene=mdh;inference=similar to sequence:INSDC:AF282310;product=malate dehydrogenase;protein_id=CAL22104.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3924797	3925714	.	-	.	ID=id8471;Note=Pfam match to entry PF00056 ldh%2C lactate/malate dehydrogenase%2C score 455.30%2C E-value 5.2e-133;gbkey=misc_feature;gene=mdh;inference=protein motif:PF00056
AL590842.1	EMBL	sequence_feature	3925244	3925282	.	-	.	ID=id8472;Note=PS00068 Malate dehydrogenase active site signature.;gbkey=misc_feature;gene=mdh;inference=protein motif:ProSite:PS00068
AL590842.1	EMBL	gene	3926181	3926651	.	+	.	ID=gene3461;Name=argR;gbkey=Gene;gene=argR;gene_biotype=protein_coding;gene_synonym=xerA;locus_tag=YPO3517
AL590842.1	EMBL	CDS	3926181	3926651	.	+	0	ID=cds3414;Parent=gene3461;Dbxref=GOA:Q8ZBA2,InterPro:IPR001669,InterPro:IPR011991,InterPro:IPR020899,InterPro:IPR020900,InterPro:IPR024946,NCBI_GP:CAL22105.1;Name=CAL22105.1;Note=Similar to Escherichia coli arginine repressor ArgR or XerA SW:ARGR_ECOLI (P15282) (156 aa) fasta scores: E(): 0%2C 89.7%25 id in 156 aa%2C and to Salmonella typhimurium arginine repressor ArgR SW:ARGR_SALTY (P37170) (156 aa) fasta scores: E(): 0%2C 89.1%25 id in 156 aa;gbkey=CDS;gene=argR;product=arginine repressor;protein_id=CAL22105.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3926196	3926648	.	+	.	ID=id8473;Note=Pfam match to entry PF01316 Arg_repressor%2C Arginine repressor%2C score 377.70%2C E-value 1.2e-109;gbkey=misc_feature;gene=argR;inference=protein motif:PF01316
AL590842.1	EMBL	gene	3927040	3927303	.	+	.	ID=gene3462;Name=YPO3518;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3518
AL590842.1	EMBL	CDS	3927040	3927303	.	+	0	ID=cds3415;Parent=gene3462;Dbxref=InterPro:IPR010854,InterPro:IPR025543,UniProtKB/TrEMBL:Q7CKK1,NCBI_GP:CAL22106.1;Name=CAL22106.1;Note=Similar to Escherichia coli hypothetical 11.2 kDa protein in argR-cafA intergenic region precursor YhcN SW:YHCN_ECOLI (P46477) (87 aa) fasta scores: E(): 4.9e-16%2C54.0%25 id in 87 aa%2C and to Escherichia coli hypothetical 8.8 kDa protein in ndh-mfd intergenic region precursor YcfR SW:YCFR_ECOLI (P75953) (85 aa) fasta scores: E(): 8.4e-06%2C38.4%25 id in 86 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL22106.1;transl_table=11
AL590842.1	EMBL	gene	3927599	3928981	.	-	.	ID=gene3463;Name=mpl;gbkey=Gene;gene=mpl;gene_biotype=protein_coding;locus_tag=YPO3519
AL590842.1	EMBL	CDS	3927599	3928981	.	-	0	ID=cds3416;Parent=gene3463;Dbxref=GOA:Q7CKK2,InterPro:IPR000713,InterPro:IPR004101,InterPro:IPR005757,InterPro:IPR013221,InterPro:IPR016040,UniProtKB/TrEMBL:Q7CKK2,NCBI_GP:CAL22107.1;Name=CAL22107.1;Note=Similar to Escherichia coli UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diamin o pimelate ligase Mpl SW:MPL_ECOLI (P37773) (457 aa) fasta scores: E(): 0%2C 84.2%25 id in 456 aa%2C and to Haemophilus influenzae UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diamin o pimelate ligase Mpl or Hi0121 SW:MPL_HAEIN (P43948) (453 aa) fasta scores: E(): 0%2C 64.9%25 id in 450 aa;gbkey=CDS;gene=mpl;product=UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m e so-diaminopimelate ligase;protein_id=CAL22107.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3927980	3928669	.	-	.	ID=id8474;Note=Pfam match to entry PF01225 Mur_ligase%2C Mur ligase family%2C score 240.70%2C E-value 2e-68;gbkey=misc_feature;gene=mpl;inference=protein motif:PF01225
AL590842.1	EMBL	gene	3929152	3930165	.	+	.	ID=gene3464;Name=fbp;gbkey=Gene;gene=fbp;gene_biotype=protein_coding;gene_synonym=fdp;locus_tag=YPO3520
AL590842.1	EMBL	CDS	3929152	3930165	.	+	0	ID=cds3417;Parent=gene3464;Dbxref=GOA:Q0WBC9,InterPro:IPR000146,InterPro:IPR020548,InterPro:IPR028343,NCBI_GP:CAL22108.1;Name=CAL22108.1;Note=Similar to Escherichia coli fructose-1%2C6-bisphosphatase Fbp or Fdp SW:F16P_ECOLI (P09200) (332 aa) fasta scores: E(): 0%2C 84.1%25 id in 333 aa%2Cand to Vibrio cholerae fructose-1%2C6-bisphosphatase Vc2544 TR:Q9KP35 (EMBL:AE004323) (336 aa) fasta scores: E(): 0%2C73.9%25 id in 333 aa;gbkey=CDS;gene=fbp;inference=similar to sequence:INSDC:AE004323;product=fructose-1%2C6-bisphosphatase;protein_id=CAL22108.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3929326	3930114	.	+	.	ID=id8475;Note=Pfam match to entry PF00316 FBPase%2CFructose-1-6-bisphosphatase%2C score 570.50%2C E-value 1.1e-167;gbkey=misc_feature;gene=fbp;inference=protein motif:PF00316
AL590842.1	EMBL	sequence_feature	3929959	3929997	.	+	.	ID=id8476;Note=PS00124 Fructose-1-6-bisphosphatase active site.;gbkey=misc_feature;gene=fbp;inference=protein motif:ProSite:PS00124
AL590842.1	EMBL	gene	3930365	3930892	.	+	.	ID=gene3465;Name=ppa;gbkey=Gene;gene=ppa;gene_biotype=protein_coding;locus_tag=YPO3521
AL590842.1	EMBL	CDS	3930365	3930892	.	+	0	ID=cds3418;Parent=gene3465;Dbxref=GOA:Q8ZB98,InterPro:IPR008162,NCBI_GP:CAL22109.1;Name=CAL22109.1;Note=Similar to Escherichia coli inorganic pyrophosphatase Ppa SW:IPYR_ECOLI (P17288) (175 aa) fasta scores: E(): 0%2C 91.3%25 id in 173 aa%2C and to Vibrio cholerae inorganic pyrophosphatase VC2545 TR:Q9KP34 (EMBL:AE004323) (176 aa) fasta scores: E(): 0%2C 83.3%25 id in 174 aa;gbkey=CDS;gene=ppa;inference=similar to sequence:INSDC:AE004323;product=inorganic pyrophosphatase;protein_id=CAL22109.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3930413	3930889	.	+	.	ID=id8477;Note=Pfam match to entry PF00719 Pyrophosphatase%2CInorganic pyrophosphatase%2C score 211.30%2C E-value 1.4e-59;gbkey=misc_feature;gene=ppa;inference=protein motif:PF00719
AL590842.1	EMBL	sequence_feature	3930560	3930580	.	+	.	ID=id8478;Note=PS00387 Inorganic pyrophosphatase signature.;gbkey=misc_feature;gene=ppa;inference=protein motif:ProSite:PS00387
AL590842.1	EMBL	gene	3931010	3931366	.	-	.	ID=gene3466;Name=YPO3522;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3522
AL590842.1	EMBL	CDS	3931010	3931366	.	-	0	ID=cds3419;Parent=gene3466;Dbxref=InterPro:IPR009288,InterPro:IPR013024,UniProtKB/TrEMBL:Q7CKK3,NCBI_GP:CAL22110.1;Name=CAL22110.1;Note=Similar to Escherichia coli hypothetical protein YtfP SW:YTFP_ECOLI (P39323) (113 aa) fasta scores: E(): 2.2e-30%2C 61.3%25 id in 111 aa%2C and to Vibrio cholerae hypothetical protein VC2546 TR:Q9KP33 (EMBL:AE004323) (115 aa) fasta scores: E(): 6.3e-15%2C 39.1%25 id in 110 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004323;product=conserved hypothetical protein;protein_id=CAL22110.1;transl_table=11
AL590842.1	EMBL	gene	3931369	3935286	.	-	.	ID=gene3467;Name=YPO3523;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3523
AL590842.1	EMBL	CDS	3931369	3935286	.	-	0	ID=cds3420;Parent=gene3467;Dbxref=InterPro:IPR007452,InterPro:IPR011049,UniProtKB/TrEMBL:Q7CKK4,NCBI_GP:CAL22111.1;Name=CAL22111.1;Note=Similar to Escherichia coli hypothetical 136.8 kDa protein in msrA-chpB intergenic region YtfN SW:YTFN_ECOLI (P39321) (1259 aa) fasta scores: E(): 0%2C 57.4%25 id in 1309 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL22111.1;transl_table=11
AL590842.1	EMBL	gene	3935283	3937019	.	-	.	ID=gene3468;Name=YPO3524;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3524
AL590842.1	EMBL	CDS	3935283	3937019	.	-	0	ID=cds3421;Parent=gene3468;Dbxref=GOA:Q7CKK5,InterPro:IPR000184,InterPro:IPR010827,UniProtKB/TrEMBL:Q7CKK5,NCBI_GP:CAL22112.1;Name=CAL22112.1;Note=Similar to Escherichia coli hypothetical 64.8 kDa protein in msrA-chpB intergenic region precursor YtfM SW:YTFM_ECOLI (P39320) (577 aa) fasta scores: E(): 0%2C 71.2%25 id in 573 aa%2C and to Haemophilus influenzae hypothetical protein Hi0698 precursor SW:YTFM_HAEIN (P44038) (578 aa) fasta scores: E(): 0%2C 43.3%25 id in 577 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL22112.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3935466	3935504	.	-	.	ID=id8479;Note=PS00213 Lipocalin signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00213
AL590842.1	EMBL	gene	3937294	3937932	.	+	.	ID=gene3469;Name=msrA;gbkey=Gene;gene=msrA;gene_biotype=protein_coding;gene_synonym=pms;locus_tag=YPO3525
AL590842.1	EMBL	CDS	3937294	3937932	.	+	0	ID=cds3422;Parent=gene3469;Dbxref=GOA:Q8ZB94,InterPro:IPR002569,InterPro:IPR028427,NCBI_GP:CAL22113.1;Name=CAL22113.1;Note=Similar to Escherichia coli peptide methionine sulfoxide reductase MsrA SW:PMSR_ECOLI (P27110) (211 aa) fasta scores: E(): 0%2C 74.3%25 id in 206 aa%2C and to Erwinia chrysanthemi peptide methionine sulfoxide reductase MsrA TR:Q9ZEQ8 (EMBL:AJ012716) (213 aa) fasta scores: E(): 0%2C71.9%25 id in 210 aa;gbkey=CDS;gene=msrA;inference=similar to sequence:INSDC:AJ012716;product=peptide methionine sulfoxide reductase;protein_id=CAL22113.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3937423	3937905	.	+	.	ID=id8480;Note=Pfam match to entry PF01625 PMSR%2C Peptide methionine sulfoxide reductase%2C score 323.90%2C E-value 1.8e-93;gbkey=misc_feature;gene=msrA;inference=protein motif:PF01625
AL590842.1	EMBL	gene	3938210	3939541	.	+	.	ID=gene3470;Name=YPO3526;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3526
AL590842.1	EMBL	CDS	3938210	3939541	.	+	0	ID=cds3423;Parent=gene3470;Dbxref=GOA:Q7CKK6,InterPro:IPR000644,InterPro:IPR002550,InterPro:IPR005170,InterPro:IPR016166,InterPro:IPR016169,UniProtKB/TrEMBL:Q7CKK6,NCBI_GP:CAL22114.1;Name=CAL22114.1;Note=Similar to Escherichia coli hypothetical 49.8 kDa protein in cysQ-msrA intergenic region YtfL SW:YTFL_ECOLI (P39319) (447 aa) fasta scores: E(): 0%2C 82.2%25 id in 437 aa%2Cand to Vibrio cholerae putative hemolysin Vca0837 TR:Q9KLA9 (EMBL:AE004411) (437 aa) fasta scores: E(): 0%2C 59.4%25 id in 438 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004411;product=putative membrane protein;protein_id=CAL22114.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3938213	3938800	.	+	.	ID=id8481;Note=Pfam match to entry PF01595 DUF21%2C Domain of unknown function DUF21%2C score 236.70%2C E-value 3.3e-67;gbkey=misc_feature;inference=protein motif:PF01595
AL590842.1	EMBL	sequence_feature	3938222	3938290	.	+	.	ID=id8482;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3938381	3938449	.	+	.	ID=id8483;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3938492	3938560	.	+	.	ID=id8484;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3938639	3938692	.	+	.	ID=id8485;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3938855	3939019	.	+	.	ID=id8486;Note=Pfam match to entry PF00571 CBS%2C CBS domain%2C score 29.90%2C E-value 5.9e-05;gbkey=misc_feature;inference=protein motif:PF00571
AL590842.1	EMBL	sequence_feature	3939047	3939208	.	+	.	ID=id8487;Note=Pfam match to entry PF00571 CBS%2C CBS domain%2C score 33.50%2C E-value 4.8e-06;gbkey=misc_feature;inference=protein motif:PF00571
AL590842.1	EMBL	gene	3939649	3939861	.	-	.	ID=gene3471;Name=YPO3527;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3527
AL590842.1	EMBL	CDS	3939649	3939861	.	-	0	ID=cds3424;Parent=gene3471;Dbxref=InterPro:IPR009491,UniProtKB/TrEMBL:Q7CKK7,NCBI_GP:CAL22115.1;Name=CAL22115.1;Note=Similar to Escherichia coli hypothetical protein YtfK SW:YTFK_ECOLI (P39318) (68 aa) fasta scores: E(): 1.7e-21%2C 77.3%25 id in 66 aa%2C and to Vibrio cholerae hypothetical protein VC2473 TR:Q9KPA0 (EMBL:AE004317) (77 aa) fasta scores: E(): 1.1e-12%2C 46.9%25 id in 64 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004317;product=conserved hypothetical protein;protein_id=CAL22115.1;transl_table=11
AL590842.1	EMBL	gene	3940197	3940760	.	+	.	ID=gene3472;Name=YPO3528;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3528
AL590842.1	EMBL	CDS	3940197	3940760	.	+	0	ID=cds3425;Parent=gene3472;Dbxref=InterPro:IPR006513,InterPro:IPR012336,UniProtKB/TrEMBL:Q0WBC1,NCBI_GP:CAL22116.1;Name=CAL22116.1;Note=Similar to Escherichia coli protein YtfJ precursor ytfJ SW:YTFJ_ECOLI (P39187) (184 aa) fasta scores: E(): 0%2C59.7%25 id in 186 aa%2C and to Vibrio cholerae hypothetical protein Vc2550 TR:Q9KP29 (EMBL:AE004324) (183 aa) fasta scores: E(): 0%2C 52.5%25 id in 183 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004324;product=putative exported protein;protein_id=CAL22116.1;transl_table=11
AL590842.1	EMBL	gene	3940763	3941506	.	-	.	ID=gene3473;Name=amtA;gbkey=Gene;gene=amtA;gene_biotype=protein_coding;gene_synonym=cysQ;locus_tag=YPO3529
AL590842.1	EMBL	CDS	3940763	3941506	.	-	0	ID=cds3426;Parent=gene3473;Dbxref=GOA:Q7CKK8,InterPro:IPR000760,InterPro:IPR006240,InterPro:IPR020550,InterPro:IPR020583,UniProtKB/TrEMBL:Q7CKK8,NCBI_GP:CAL22117.1;Name=CAL22117.1;Note=Similar to Escherichia coli CysQ protein or AmtA SW:CYSQ_ECOLI (P22255) (246 aa) fasta scores: E(): 0%2C 77.6%25 id in 246 aa%2C and to Xylella fastidiosa sulfite synthesis pathway protein Xf0187 TR:Q9PGW1 (EMBL:AE003872) (272 aa) fasta scores: E(): 0%2C 46.7%25 id in 244 aa;gbkey=CDS;gene=amtA;inference=similar to sequence:INSDC:AE003872;product=inositol monophosphatase family protein;protein_id=CAL22117.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3940838	3940975	.	-	.	ID=id8488;Note=Pfam match to entry PF00459 inositol_P%2C Inositol monophosphatase family%2C score 34.90%2C E-value 8.1e-09;gbkey=misc_feature;gene=amtA;inference=protein motif:PF00459
AL590842.1	EMBL	sequence_feature	3940850	3940894	.	-	.	ID=id8489;Note=PS00630 Inositol monophosphatase family signature 2.;gbkey=misc_feature;gene=amtA;inference=protein motif:ProSite:PS00630
AL590842.1	EMBL	sequence_feature	3941114	3941323	.	-	.	ID=id8490;Note=Pfam match to entry PF00459 inositol_P%2C Inositol monophosphatase family%2C score 52.40%2C E-value 9.3e-14;gbkey=misc_feature;gene=amtA;inference=protein motif:PF00459
AL590842.1	EMBL	sequence_feature	3941225	3941266	.	-	.	ID=id8491;Note=PS00629 Inositol monophosphatase family signature 1.;gbkey=misc_feature;gene=amtA;inference=protein motif:ProSite:PS00629
AL590842.1	EMBL	gene	3941938	3943908	.	+	.	ID=gene3474;Name=cpdB;gbkey=Gene;gene=cpdB;gene_biotype=protein_coding;locus_tag=YPO3530
AL590842.1	EMBL	CDS	3941938	3943908	.	+	0	ID=cds3427;Parent=gene3474;Dbxref=GOA:Q7CKK9,InterPro:IPR004843,InterPro:IPR006146,InterPro:IPR006179,InterPro:IPR006294,InterPro:IPR008334,InterPro:IPR029052,UniProtKB/TrEMBL:Q7CKK9,NCBI_GP:CAL22118.1;Name=CAL22118.1;Note=Similar to Escherichia coli 2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase precursor CpdB SW:CN16_ECOLI (P08331) (647 aa) fasta scores: E(): 0%2C 76.0%25 id in 646 aa%2C and to Yersinia enterocolitica 2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase precursor CpdB SW:CN16_YEREN (P53052) (652 aa) fasta scores: E(): 0%2C 91.3%25 id in 652 aa;gbkey=CDS;gene=cpdB;product=2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase precursor;protein_id=CAL22118.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3942031	3943650	.	+	.	ID=id8492;Note=Pfam match to entry PF01009 5_nucleotidase%2C5'-nucleotidase%2C score 829.80%2C E-value 9.5e-246;gbkey=misc_feature;gene=cpdB;inference=protein motif:PF01009
AL590842.1	EMBL	sequence_feature	3942031	3942069	.	+	.	ID=id8493;Note=PS00785 5'-nucleotidase signature 1.;gbkey=misc_feature;gene=cpdB;inference=protein motif:ProSite:PS00785
AL590842.1	EMBL	sequence_feature	3942286	3942321	.	+	.	ID=id8494;Note=PS00786 5'-nucleotidase signature 2.;gbkey=misc_feature;gene=cpdB;inference=protein motif:ProSite:PS00786
AL590842.1	EMBL	gene	3944063	3944728	.	+	.	ID=gene3475;Name=YPO3531;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3531
AL590842.1	EMBL	CDS	3944063	3944728	.	+	0	ID=cds3428;Parent=gene3475;Dbxref=GOA:Q8ZB88,InterPro:IPR012312,InterPro:IPR019903,InterPro:IPR023742,NCBI_GP:CAL22119.1;Name=CAL22119.1;Note=Similar to Escherichia coli hypothetical protein YtfE SW:YTFE_ECOLI (P39313) (220 aa) fasta scores: E(): 0%2C61.5%25 id in 221 aa%2C and to Haemophilus influenzae hypothetical protein HI1677 SW:YTFE_HAEIN (P45312) (223 aa) fasta scores: E(): 0%2C 54.1%25 id in 220 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL22119.1;transl_table=11
AL590842.1	EMBL	gene	3944826	3945446	.	-	.	ID=gene3476;Name=fklB;gbkey=Gene;gene=fklB;gene_biotype=protein_coding;locus_tag=YPO3532
AL590842.1	EMBL	CDS	3944826	3945446	.	-	0	ID=cds3429;Parent=gene3476;Dbxref=GOA:Q7CKL1,InterPro:IPR000774,InterPro:IPR001179,InterPro:IPR023566,UniProtKB/TrEMBL:Q7CKL1,NCBI_GP:CAL22120.1;Name=CAL22120.1;Note=Similar to Escherichia coli FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase FklB SW:FKBB_ECOLI (P39311) (205 aa) fasta scores: E(): 0%2C 73.2%25 id in 205 aa%2Cand to Vibrio cholerae FKBP-type peptidyl-prolyl cis-trans isomerase Vc2568 TR:Q9KP11 (EMBL:AE004325) (209 aa) fasta scores: E(): 0%2C 61.2%25 id in 206 aa;gbkey=CDS;gene=fklB;inference=similar to sequence:INSDC:AE004325;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=CAL22120.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3944838	3945113	.	-	.	ID=id8495;Note=Pfam match to entry PF00254 FKBP%2C FKBP-type peptidyl-prolyl cis-trans isomerases%2C score 142.00%2C E-value 6e-42;gbkey=misc_feature;gene=fklB;inference=protein motif:PF00254
AL590842.1	EMBL	sequence_feature	3945027	3945074	.	-	.	ID=id8496;Note=PS00453 FKBP-type peptidyl-prolyl cis-trans isomerase signature 1.;gbkey=misc_feature;gene=fklB;inference=protein motif:ProSite:PS00453
AL590842.1	EMBL	sequence_feature	3945189	3945212	.	-	.	ID=id8497;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=fklB;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3945789	3946529	.	+	.	ID=gene3477;Name=YPO3533;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3533
AL590842.1	EMBL	CDS	3945789	3946529	.	+	0	ID=cds3430;Parent=gene3477;Dbxref=InterPro:IPR007340,InterPro:IPR013731,UniProtKB/TrEMBL:Q7CKL2,NCBI_GP:CAL22121.1;Name=CAL22121.1;Note=Similar to Escherichia coli hypothetical protein YtfB SW:YTFB_ECOLI (P39310) (212 aa) fasta scores: E(): 5.1e-16%2C 45.9%25 id in 207 aa%2C and to Vibrio cholerae hypothetical protein VC2567 TR:Q9KP12 (EMBL:AE004325) (190 aa) fasta scores: E(): 4.1e-14%2C 32.1%25 id in 187 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004325;product=conserved hypothetical protein;protein_id=CAL22121.1;transl_table=11
AL590842.1	EMBL	gene	3946669	3947124	.	+	.	ID=gene3478;Name=YPO3534;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3534
AL590842.1	EMBL	CDS	3946669	3947124	.	+	0	ID=cds3431;Parent=gene3478;Dbxref=InterPro:IPR022231,UniProtKB/TrEMBL:Q7CKL3,NCBI_GP:CAL22122.1;Name=CAL22122.1;Note=no significant database matches;gbkey=CDS;product=putative exported protein;protein_id=CAL22122.1;transl_table=11
AL590842.1	EMBL	repeat_region	3947138	3947849	.	-	.	ID=id8498;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	3947246	3947704	.	-	.	ID=gene3479;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO3535
AL590842.1	EMBL	CDS	3947246	3947704	.	-	0	ID=cds3432;Parent=gene3479;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL22123.1;Name=CAL22123.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL22123.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3947339	3947650	.	-	.	ID=id8499;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	3947900	3948352	.	-	.	ID=gene3480;Name=rplI;gbkey=Gene;gene=rplI;gene_biotype=protein_coding;locus_tag=YPO3536
AL590842.1	EMBL	CDS	3947900	3948352	.	-	0	ID=cds3433;Parent=gene3480;Dbxref=GOA:Q8ZB84,InterPro:IPR000244,InterPro:IPR009027,InterPro:IPR020069,InterPro:IPR020070,InterPro:IPR020594,NCBI_GP:CAL22124.1;Name=CAL22124.1;Note=Similar to Escherichia coli 50S ribosomal protein L9 RplI SW:RL9_ECOLI (P02418) (149 aa) fasta scores: E(): 0%2C89.9%25 id in 149 aa%2C and to Haemophilus influenzae 50S ribosomal protein L9 RplI or Rpl9 or Hi0544 SW:RL9_HAEIN (P44349) (149 aa) fasta scores: E(): 0%2C 70.5%25 id in 149 aa;gbkey=CDS;gene=rplI;product=50S ribosomal protein L9;protein_id=CAL22124.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3947906	3948352	.	-	.	ID=id8500;Note=Pfam match to entry PF01281 Ribosomal_L9%2C Ribosomal protein L9%2C score 259.20%2C E-value 5.6e-74;gbkey=misc_feature;gene=rplI;inference=protein motif:PF01281
AL590842.1	EMBL	sequence_feature	3948233	3948316	.	-	.	ID=id8501;Note=PS00651 Ribosomal protein L9 signature.;gbkey=misc_feature;gene=rplI;inference=protein motif:ProSite:PS00651
AL590842.1	EMBL	gene	3948392	3948619	.	-	.	ID=gene3481;Name=rpsR;gbkey=Gene;gene=rpsR;gene_biotype=protein_coding;locus_tag=YPO3537
AL590842.1	EMBL	CDS	3948392	3948619	.	-	0	ID=cds3434;Parent=gene3481;Dbxref=GOA:Q8ZB83,InterPro:IPR001648,InterPro:IPR018275,NCBI_GP:CAL22125.1;Name=CAL22125.1;Note=Similar to Escherichia coli 30S ribosomal protein S18 RpsR SW:RS18_ECOLI (P02374) (74 aa) fasta scores: E(): 2.2e-30%2C 97.3%25 id in 74 aa%2C and to Haemophilus influenzae 30S ribosomal protein S18 RpsR or Rps18 or Hi0545 SW:RS18_HAEIN (P44384) (74 aa) fasta scores: E(): 3.4e-29%2C93.2%25 id in 74 aa;gbkey=CDS;gene=rpsR;product=30S ribosomal protein S18;protein_id=CAL22125.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3948416	3948577	.	-	.	ID=id8502;Note=Pfam match to entry PF01084 Ribosomal_S18%2C Ribosomal protein S18%2C score 110.30%2C E-value 3.7e-29;gbkey=misc_feature;gene=rpsR;inference=protein motif:PF01084
AL590842.1	EMBL	sequence_feature	3948488	3948559	.	-	.	ID=id8503;Note=PS00057 Ribosomal protein S18 signature.;gbkey=misc_feature;gene=rpsR;inference=protein motif:ProSite:PS00057
AL590842.1	EMBL	gene	3948624	3948944	.	-	.	ID=gene3482;Name=priB;gbkey=Gene;gene=priB;gene_biotype=protein_coding;locus_tag=YPO3538
AL590842.1	EMBL	CDS	3948624	3948944	.	-	0	ID=cds3435;Parent=gene3482;Dbxref=GOA:Q8ZB82,InterPro:IPR000424,InterPro:IPR012340,InterPro:IPR023646,NCBI_GP:CAL22126.1;Name=CAL22126.1;Note=Similar to Escherichia coli primosomal replication protein n PriB SW:PRIB_ECOLI (P07013) (103 aa) fasta scores: E(): 0%2C 77.7%25 id in 103 aa%2C and to Haemophilus influenzae primosomal replication protein n PriB SW:PRIB_HAEIN (P44748) (94 aa) fasta scores: E(): 2.7e-21%2C59.1%25 id in 93 aa;gbkey=CDS;gene=priB;product=primosomal replication protein n;protein_id=CAL22126.1;transl_table=11
AL590842.1	EMBL	gene	3948950	3949342	.	-	.	ID=gene3483;Name=rpsF;gbkey=Gene;gene=rpsF;gene_biotype=protein_coding;locus_tag=YPO3539
AL590842.1	EMBL	CDS	3948950	3949342	.	-	0	ID=cds3436;Parent=gene3483;Dbxref=GOA:Q8ZB81,InterPro:IPR000529,InterPro:IPR014717,InterPro:IPR020814,InterPro:IPR020815,NCBI_GP:CAL22127.1;Name=CAL22127.1;Note=Similar to Escherichia coli 30S ribosomal protein S6 RpsF SW:RS6_ECOLI (P02358) (135 aa) fasta scores: E(): 0%2C88.5%25 id in 131 aa%2C and to Haemophilus influenzae 30S ribosomal protein S6 RpsF or Rps6 or Hi0547 SW:RS6_HAEIN (P44375) (125 aa) fasta scores: E(): 0%2C 72.3%25 id in 130 aa;gbkey=CDS;gene=rpsF;product=30S ribosomal protein S6;protein_id=CAL22127.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3949067	3949339	.	-	.	ID=id8504;Note=Pfam match to entry PF01250 Ribosomal_S6%2C Ribosomal protein S6%2C score 171.60%2C E-value 1.3e-47;gbkey=misc_feature;gene=rpsF;inference=protein motif:PF01250
AL590842.1	EMBL	sequence_feature	3949187	3949216	.	-	.	ID=id8505;Note=PS01048 Ribosomal protein S6 signature.;gbkey=misc_feature;gene=rpsF;inference=protein motif:ProSite:PS01048
AL590842.1	EMBL	gene	3949356	3949634	.	-	.	ID=gene3484;Name=YPO3540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3540
AL590842.1	EMBL	CDS	3949356	3949634	.	-	0	ID=cds3437;Parent=gene3484;Dbxref=UniProtKB/TrEMBL:Q74XA5,NCBI_GP:CAL22128.1;Name=CAL22128.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22128.1;transl_table=11
AL590842.1	EMBL	pseudogene	3949709	3950380	.	-	.	ID=gene3485;Name=YPO3541;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO3541;pseudo=true
AL590842.1	EMBL	CDS	3949709	3950380	.	-	0	ID=cds3438;Parent=gene3485;Note=Deletion of 26 amino acids at the N-terminal end due to the insertion of IS100 element. Similar to Escherichia coli hypothetical 27.6 kDa protein in aidB-sgaT intergenic region YjfP SW:YJFP_ECOLI (P39298) (249 aa) fasta scores: E(): 0%2C 52.0%25 id in 223 aa;gbkey=CDS;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	repeat_region	3950381	3952334	.	+	.	ID=id8506;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	3950381	3950408	.	+	.	ID=id8507;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	3950467	3951489	.	+	.	ID=gene3486;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO3542
AL590842.1	EMBL	CDS	3950467	3951489	.	+	0	ID=cds3439;Parent=gene3486;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL22130.1;Name=CAL22130.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL22130.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3950491	3950574	.	+	.	ID=id8508;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	sequence_feature	3950518	3950583	.	+	.	ID=id8509;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	3950812	3951345	.	+	.	ID=id8510;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	gene	3951486	3952268	.	+	.	ID=gene3487;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO3543
AL590842.1	EMBL	CDS	3951486	3952268	.	+	0	ID=cds3440;Parent=gene3487;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL22131.1;Name=CAL22131.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL22131.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3951654	3952193	.	+	.	ID=id8511;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	3951813	3951836	.	+	.	ID=id8512;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	INVERTED	3952307	3952334	.	-	.	ID=id8513;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	pseudogene	3952335	3953225	.	+	.	ID=gene3488;Name=YPO3544;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO3544;pseudo=true
AL590842.1	EMBL	CDS	3952335	3953225	.	+	0	ID=cds3441;Parent=gene3488;Note=Deletion of 34 amino acids at the N-terminal end due to the insertion IS100 element. Similar to Escherichia coli hypothetical 37.4 kDa protein in exuR-tdcC intergenic region YqjG SW:YQJG_ECOLI (P42620) (328 aa) fasta scores: E(): 0%2C 78.4%25 id in 268 aa%2C and to Synechocystis sp. hypothetical 36.5 kDa protein Slr0605 TR:P74752 (EMBL:D90917) (319 aa) fasta scores: E(): 0%2C 65.8%25 id in 266 aa;gbkey=CDS;inference=similar to sequence:INSDC:D90917;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	3952839	3953075	.	+	.	ID=id8514;Note=Pfam match to entry PF00043 GST%2C Glutathione S-transferases.%2C score 24.60%2C E-value 1.8e-06;gbkey=misc_feature;inference=protein motif:PF00043
AL590842.1	EMBL	gene	3953349	3954242	.	-	.	ID=gene3489;Name=YPO3545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3545
AL590842.1	EMBL	CDS	3953349	3954242	.	-	0	ID=cds3442;Parent=gene3489;Dbxref=GOA:Q7CLA4,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CLA4,NCBI_GP:CAL22133.1;Name=CAL22133.1;Note=Similar to Escherichia coli hypothetical transcriptional regulator YhaJ SW:YHAJ_ECOLI (P42623) (298 aa) fasta scores: E(): 0%2C 88.9%25 id in 298 aa%2C and to Vibrio cholerae transcriptional regulator LysR family VCA0575 TR:Q9KM14 (EMBL:AE004388) (295 aa) fasta scores: E(): 0%2C48.1%25 id in 287 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004388;product=lysR-family transcriptional regulatory protein;protein_id=CAL22133.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3953793	3954218	.	-	.	ID=id8515;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 116.50%2C E-value 5.2e-31;gbkey=misc_feature;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	3954084	3954176	.	-	.	ID=id8516;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00044
AL590842.1	EMBL	sequence_feature	3954114	3954179	.	-	.	ID=id8517;Note=Predicted helix-turn-helix motif with score 1071 (+2.83 SD) at aa 22-43%2C sequence GSFAAAADELGRVPSALSYTMQ;gbkey=misc_feature
AL590842.1	EMBL	gene	3954504	3955208	.	+	.	ID=gene3490;Name=YPO3546;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3546
AL590842.1	EMBL	CDS	3954504	3955208	.	+	0	ID=cds3443;Parent=gene3490;Dbxref=InterPro:IPR003829,InterPro:IPR011051,InterPro:IPR012093,InterPro:IPR014710,UniProtKB/TrEMBL:Q7CLA3,NCBI_GP:CAL22134.1;Name=CAL22134.1;Note=Similar to Escherichia coli hypothetical protein YhaK SW:YHAK_ECOLI (P42624) (233 aa) fasta scores: E(): 0%2C68.8%25 id in 234 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL22134.1;transl_table=11
AL590842.1	EMBL	gene	3955749	3956125	.	-	.	ID=gene3491;Name=rnpB;gbkey=Gene;gene=rnpB;gene_biotype=misc_RNA
AL590842.1	EMBL	transcript	3955749	3956125	.	-	.	ID=rna78;Parent=gene3491;Note=Similar to Escherichia coli RNase P%2C RNA component involved in tRNA and 4.5S RNA-processing%2C rnpB%2C 92%25 identity in 347 nt overlap;gbkey=misc_RNA;gene=rnpB
AL590842.1	EMBL	exon	3955749	3956125	.	-	.	ID=id8518;Parent=rna78;Note=Similar to Escherichia coli RNase P%2C RNA component involved in tRNA and 4.5S RNA-processing%2C rnpB%2C 92%25 identity in 347 nt overlap;gbkey=misc_RNA;gene=rnpB
AL590842.1	EMBL	gene	3956145	3957044	.	-	.	ID=gene3492;Name=YPO3547;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3547
AL590842.1	EMBL	CDS	3956145	3957044	.	-	0	ID=cds3444;Parent=gene3492;Dbxref=GOA:Q7CLA2,InterPro:IPR000878,InterPro:IPR008189,InterPro:IPR014776,InterPro:IPR014777,InterPro:IPR018063,UniProtKB/TrEMBL:Q7CLA2,NCBI_GP:CAL22135.1;Name=CAL22135.1;Note=Similar to Escherichia coli hypothetical protein YraL SW:YRAL_ECOLI (P45528) (286 aa) fasta scores: E(): 0%2C85.3%25 id in 286 aa%2C and to Vibrio cholerae hypothetical protein VC0582 TR:Q9KUD9 (EMBL:AE004143) (288 aa) fasta scores: E(): 0%2C 67.2%25 id in 274 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004143;product=putative tetrapyrrole methylase;protein_id=CAL22135.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3956403	3957008	.	-	.	ID=id8519;Note=Pfam match to entry PF00590 TP_methylase%2CTetrapyrrole (Corrin/Porphyrin) Methylases.%2C score 233.80%2CE-value 2.5e-66;gbkey=misc_feature;inference=protein motif:PF00590
AL590842.1	EMBL	sequence_feature	3956739	3956774	.	-	.	ID=id8520;Note=PS01296 Uncharacterized protein family UPF0011 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01296
AL590842.1	EMBL	gene	3957107	3959080	.	+	.	ID=gene3493;Name=YPO3548;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3548
AL590842.1	EMBL	CDS	3957107	3959080	.	+	0	ID=cds3445;Parent=gene3493;Dbxref=GOA:Q0WBA3,InterPro:IPR007443,InterPro:IPR028082,UniProtKB/TrEMBL:Q0WBA3,NCBI_GP:CAL22136.1;Name=CAL22136.1;Note=Similar to Escherichia coli hypothetical 72.8 kDa protein in agaI-mtr intergenic region YraM SW:YRAM_ECOLI (P45464) (678 aa) fasta scores: E(): 0%2C 53.9%25 id in 683 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL22136.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3957152	3957184	.	+	.	ID=id8521;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	3959164	3959517	.	+	.	ID=gene3494;Name=YPO3549;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3549
AL590842.1	EMBL	CDS	3959164	3959517	.	+	0	ID=cds3446;Parent=gene3494;Dbxref=GOA:Q8ZB75,InterPro:IPR003509,InterPro:IPR011335,InterPro:IPR011856,NCBI_GP:CAL22137.1;Name=CAL22137.1;Note=Similar to Escherichia coli hypothetical protein YraN SW:YRAN_ECOLI (P45465) (131 aa) fasta scores: E(): 2.7e-26%2C 57.4%25 id in 115 aa%2C and to Xylella fastidiosa hypothetical protein XF0554 TR:Q9PFV3 (EMBL:AE003902) (121 aa) fasta scores: E(): 5.9e-20%2C 49.6%25 id in 119 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE003902;product=conserved hypothetical protein;protein_id=CAL22137.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3959188	3959472	.	+	.	ID=id8522;Note=Pfam match to entry PF02021 UPF0102%2C Uncharacterised protein family UPF0102%2C score 119.40%2C E-value 6.6e-32;gbkey=misc_feature;inference=protein motif:PF02021
AL590842.1	EMBL	gene	3959788	3960378	.	+	.	ID=gene3495;Name=YPO3550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3550
AL590842.1	EMBL	CDS	3959788	3960378	.	+	0	ID=cds3447;Parent=gene3495;Dbxref=GOA:Q8ZB74,InterPro:IPR001347,InterPro:IPR023070,NCBI_GP:CAL22138.1;Name=CAL22138.1;Note=Similar to Escherichia coli hypothetical 21.1 kDa protein in agaI-mtr intergenic region YraO SW:YRAO_ECOLI (P45466) (196 aa) fasta scores: E(): 0%2C 93.8%25 id in 194 aa%2Cand to Vibrio cholerae putative phosphoheptose isomerase Vc0579 TR:Q9KUE2 (EMBL:AE004143) (196 aa) fasta scores: E(): 0%2C 68.9%25 id in 196 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004143;product=probable phosphosugar isomerase;protein_id=CAL22138.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3959890	3960366	.	+	.	ID=id8523;Note=Pfam match to entry PF01380 SIS%2C SIS domain%2C score 155.90%2C E-value 6.9e-43;gbkey=misc_feature;inference=protein motif:PF01380
AL590842.1	EMBL	gene	3960389	3960964	.	+	.	ID=gene3496;Name=YPO3551;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3551
AL590842.1	EMBL	CDS	3960389	3960964	.	+	0	ID=cds3448;Parent=gene3496;Dbxref=InterPro:IPR007055,InterPro:IPR014004,UniProtKB/TrEMBL:Q74PT1,NCBI_GP:CAL22139.1;Name=CAL22139.1;Note=Similar to Escherichia coli hypothetical 20.0 kDa protein in agai-mtr intergenic region precursor yraP SW:YRAP_ECOLI (P45467) (191 aa) fasta scores: E(): 0%2C 73.3%25 id in 191 aa%2C and to Actinobacillus pleuropneumoniae 21 kDa hemolysin precursor hlY SW:HLY2_ACTPL (P46028) (194 aa) fasta scores: E(): 2.2e-25%2C 49.0%25 id in 155 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL22139.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3960413	3960445	.	+	.	ID=id8524;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	3961171	3961896	.	-	.	ID=gene3497;Name=mtgA;gbkey=Gene;gene=mtgA;gene_biotype=protein_coding;locus_tag=YPO3552
AL590842.1	EMBL	CDS	3961171	3961896	.	-	0	ID=cds3449;Parent=gene3497;Dbxref=GOA:Q8ZB72,InterPro:IPR001264,InterPro:IPR011812,InterPro:IPR023346,NCBI_GP:CAL22140.1;Name=CAL22140.1;Note=Similar to Klebsiella pneumoniae monofunctional biosynthetic peptidoglycan transglycosylase MtgA SW:MTGA_KLEPN (Q48465) (242 aa) fasta scores: E(): 0%2C 71.4%25 id in 224 aa%2C and to Escherichia coli monofunctional biosynthetic peptidoglycan transglycosylase MtgA SW:MTGA_ECOLI (P46022) (242 aa) fasta scores: E(): 0%2C 72.4%25 id in 225 aa;gbkey=CDS;gene=mtgA;product=monofunctional biosynthetic peptidoglycan transglycosylase;protein_id=CAL22140.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3961261	3961767	.	-	.	ID=id8525;Note=Pfam match to entry PF00912 Transglycosyl%2CTransglycosylase%2C score 261.10%2C E-value 1.5e-74;gbkey=misc_feature;gene=mtgA;inference=protein motif:PF00912
AL590842.1	EMBL	sequence_feature	3961768	3961833	.	-	.	ID=id8526;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=mtgA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3961893	3962546	.	-	.	ID=gene3498;Name=elb2;gbkey=Gene;gene=elb2;gene_biotype=protein_coding;gene_synonym=elbB;locus_tag=YPO3553
AL590842.1	EMBL	CDS	3961893	3962546	.	-	0	ID=cds3450;Parent=gene3498;Dbxref=InterPro:IPR002818,InterPro:IPR026041,InterPro:IPR029062,UniProtKB/TrEMBL:Q7CL99,NCBI_GP:CAL22141.1;Name=CAL22141.1;Note=Similar to Escherichia coli enhancing lycopene biosynthesis protein 2 ElbB or Elb2 SW:ELBB_ECOLI (P26428) (217 aa) fasta scores: E(): 0%2C 63.6%25 id in 217 aa;gbkey=CDS;gene=elb2;product=enhancing lycopene biosynthesis protein 2;protein_id=CAL22141.1;transl_table=11
AL590842.1	EMBL	gene	3962576	3962770	.	-	.	ID=gene3499;Name=YPO3554;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3554
AL590842.1	EMBL	CDS	3962576	3962770	.	-	0	ID=cds3451;Parent=gene3499;Dbxref=UniProtKB/TrEMBL:Q74PS9,NCBI_GP:CAL22142.1;Name=CAL22142.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22142.1;transl_table=11
AL590842.1	EMBL	gene	3962788	3965124	.	-	.	ID=gene3500;Name=arcB;gbkey=Gene;gene=arcB;gene_biotype=protein_coding;locus_tag=YPO3555
AL590842.1	EMBL	CDS	3962788	3965124	.	-	0	ID=cds3452;Parent=gene3500;Dbxref=GOA:Q7CL98,InterPro:IPR000014,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR001789,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR008207,InterPro:IPR009082,InterPro:IPR011006,InterPro:IPR013767,InterPro:IPR014409,InterPro:IPR027460,UniProtKB/TrEMBL:Q7CL98,NCBI_GP:CAL22143.1;Name=CAL22143.1;Note=Similar to Escherichia coli aerobic respiration control sensor protein ArcB SW:ARCB_ECOLI (P22763) (776 aa) fasta scores: E(): 0%2C 75.9%25 id in 781 aa%2C and to Vibrio cholerae sensor histidine kinase FexB or VC2369 TR:Q9KPJ8 (EMBL:AE004307) (785 aa) fasta scores: E(): 0%2C 58.8%25 id in 779 aa;gbkey=CDS;gene=arcB;inference=similar to sequence:INSDC:AE004307;product=aerobic respiration control sensor/response regulatory protein;protein_id=CAL22143.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3963211	3963552	.	-	.	ID=id8527;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 122.90%2C E-value 5.9e-33;gbkey=misc_feature;gene=arcB;inference=protein motif:PF00072
AL590842.1	EMBL	sequence_feature	3963613	3964251	.	-	.	ID=id8528;Note=Pfam match to entry PF00512 signal%2C Histidine kinase%2C score 240.80%2C E-value 1.9e-68;gbkey=misc_feature;gene=arcB;inference=protein motif:PF00512
AL590842.1	EMBL	sequence_feature	3964468	3964662	.	-	.	ID=id8529;Note=Pfam match to entry PF00989 PAS%2C PAS domain%2C score 43.20%2C E-value 2.3e-10;gbkey=misc_feature;gene=arcB;inference=protein motif:PF00989
AL590842.1	EMBL	sequence_feature	3964894	3964959	.	-	.	ID=id8530;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=arcB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3964999	3965064	.	-	.	ID=id8531;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=arcB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3965388	3966311	.	-	.	ID=gene3501;Name=YPO3556;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3556
AL590842.1	EMBL	CDS	3965388	3966311	.	-	0	ID=cds3453;Parent=gene3501;Dbxref=GOA:Q0WB95,InterPro:IPR005911,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR023404,UniProtKB/TrEMBL:Q0WB95,NCBI_GP:CAL22144.1;Name=CAL22144.1;Note=Similar to Escherichia coli hypothetical protein YhcC SW:YHCC_ECOLI (P45476) (309 aa) fasta scores: E(): 0%2C78.7%25 id in 301 aa%2C and to Vibrio cholerae hypothetical protein VC2371 TR:Q9KPJ6 (EMBL:AE004307) (316 aa) fasta scores: E(): 0%2C 70.9%25 id in 306 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004307;product=conserved hypothetical protein;protein_id=CAL22144.1;transl_table=11
AL590842.1	EMBL	gene	3966984	3971600	.	+	.	ID=gene3502;Name=aspB;gbkey=Gene;gene=aspB;gene_biotype=protein_coding;gene_synonym=gltB;locus_tag=YPO3557
AL590842.1	EMBL	CDS	3966984	3971600	.	+	0	ID=cds3454;Parent=gene3502;Dbxref=GOA:Q0WB94,InterPro:IPR000583,InterPro:IPR002489,InterPro:IPR002932,InterPro:IPR006982,InterPro:IPR013785,InterPro:IPR017932,InterPro:IPR029055,UniProtKB/TrEMBL:Q0WB94,NCBI_GP:CAL22145.1;Name=CAL22145.1;Note=Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB or AspB SW:GLTB_ECOLI (P09831) (1517 aa) fasta scores: E(): 0%2C 87.4%25 id in 1497 aa%2C and to Vibrio cholerae glutamate synthase%2C large subunit Vc2376 TR:Q9KPJ1 (EMBL:AE004308) (1487 aa) fasta scores: E(): 0%2C 73.7%25 id in 1488 aa;gbkey=CDS;gene=aspB;inference=similar to sequence:INSDC:AE004308;product=glutamate synthase [NADPH] large chain precursor;protein_id=CAL22145.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3967263	3967286	.	+	.	ID=id8532;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=aspB;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3969507	3970610	.	+	.	ID=id8533;Note=Pfam match to entry PF01645 Glu_synthase%2C Conserved region in glutamate synthase%2C score 805.80%2C E-value 1.5e-238;gbkey=misc_feature;gene=aspB;inference=protein motif:PF01645
AL590842.1	EMBL	sequence_feature	3970836	3971429	.	+	.	ID=id8534;Note=Pfam match to entry PF01493 DUF14%2C Domain of unknown function DUF14%2C score 348.60%2C E-value 6.8e-101;gbkey=misc_feature;gene=aspB;inference=protein motif:PF01493
AL590842.1	EMBL	gene	3971610	3973028	.	+	.	ID=gene3503;Name=aspB;gbkey=Gene;gene=aspB;gene_biotype=protein_coding;gene_synonym=gltD;locus_tag=YPO3558
AL590842.1	EMBL	CDS	3971610	3973028	.	+	0	ID=cds3455;Parent=gene3503;Dbxref=GOA:Q74PS5,InterPro:IPR006006,InterPro:IPR009051,InterPro:IPR016040,InterPro:IPR023753,InterPro:IPR028261,UniProtKB/TrEMBL:Q74PS5,NCBI_GP:CAL22146.1;Name=CAL22146.1;Note=Similar to Escherichia coli glutamate synthase [NADPH] small chain GltD or AspB SW:GLTD_ECOLI (P09832) (471 aa) fasta scores: E(): 0%2C 84.5%25 id in 471 aa%2C and to Vibrio cholerae glutamate synthase%2C small subunit Vc2377 TR:Q9KPJ0 (EMBL:AE004308) (471 aa) fasta scores: E(): 0%2C76.1%25 id in 472 aa. Similar to YPO0342 (69.8%25 identity in 470 aa overlap);gbkey=CDS;gene=aspB;inference=similar to sequence:INSDC:AE004308;product=glutamate synthase [NADPH] small chain;protein_id=CAL22146.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3972054	3972944	.	+	.	ID=id8535;Note=Pfam match to entry PF00070 pyr_redox%2C Pyridine nucleotide-disulphide oxidoreductase%2C score 100.00%2C E-value 9.3e-29;gbkey=misc_feature;gene=aspB;inference=protein motif:PF00070
AL590842.1	EMBL	gene	3973469	3973954	.	+	.	ID=gene3504;Name=YPO3559;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3559
AL590842.1	EMBL	CDS	3973469	3973954	.	+	0	ID=cds3456;Parent=gene3504;Dbxref=UniProtKB/TrEMBL:Q0WB92,NCBI_GP:CAL22147.1;Name=CAL22147.1;Note=Weak similarity to the N-terminal half of Escherichia coli iron FecB SW:FECB_ECOLI (P15028) (300 aa) fasta scores: E(): 7.6%2C 22.3%25 id in 157 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL22147.1;transl_table=11
AL590842.1	EMBL	gene	3974107	3974622	.	-	.	ID=gene3505;Name=sspB;gbkey=Gene;gene=sspB;gene_biotype=protein_coding;locus_tag=YPO3560
AL590842.1	EMBL	CDS	3974107	3974622	.	-	0	ID=cds3457;Parent=gene3505;Dbxref=InterPro:IPR007481,UniProtKB/TrEMBL:Q7CL97,NCBI_GP:CAL22148.1;Name=CAL22148.1;Note=Similar to Escherichia coli stringent starvation protein B SspB SW:SSPB_ECOLI (P25663) (165 aa) fasta scores: E(): 0%2C 72.5%25 id in 171 aa%2C and to Vibrio cholerae stringent starvation protein B Vc0577 TR:Q9KUE4 (EMBL:AE004143) (158 aa) fasta scores: E(): 8.2e-31%2C 57.9%25 id in 171 aa;gbkey=CDS;gene=sspB;inference=similar to sequence:INSDC:AE004143;product=putative stringent starvation protein B;protein_id=CAL22148.1;transl_table=11
AL590842.1	EMBL	gene	3974628	3975269	.	-	.	ID=gene3506;Name=pog;gbkey=Gene;gene=pog;gene_biotype=protein_coding;gene_synonym=ssp,sspA;locus_tag=YPO3561
AL590842.1	EMBL	CDS	3974628	3975269	.	-	0	ID=cds3458;Parent=gene3506;Dbxref=InterPro:IPR004045,InterPro:IPR004046,InterPro:IPR010987,InterPro:IPR012336,PDB:1YY7,UniProtKB/TrEMBL:Q7CL96,NCBI_GP:CAL22149.1;Name=CAL22149.1;Note=Similar to Escherichia coli stringent starvation protein A SspA SW:SSPA_ECOLI (P05838) (211 aa) fasta scores: E(): 0%2C 83.7%25 id in 208 aa%2C and to Providencia stuartii SspA TR:AAG01334 (EMBL:AF288218) (213 aa) fasta scores: E(): 0%2C 80.7%25 id in 212 aa. Inactivation of sspA blocks sspB expression.;gbkey=CDS;gene=pog;inference=similar to sequence:INSDC:AF288218;product=putative stringent starvation protein A;protein_id=CAL22149.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3974688	3975239	.	-	.	ID=id8536;Note=Pfam match to entry PF00043 GST%2C Glutathione S-transferases.%2C score 143.20%2C E-value 1.6e-42;gbkey=misc_feature;gene=pog;inference=protein motif:PF00043
AL590842.1	EMBL	gene	3975643	3976035	.	-	.	ID=gene3507;Name=rpsI;gbkey=Gene;gene=rpsI;gene_biotype=protein_coding;locus_tag=YPO3562
AL590842.1	EMBL	CDS	3975643	3976035	.	-	0	ID=cds3459;Parent=gene3507;Dbxref=GOA:Q8ZB62,InterPro:IPR000754,InterPro:IPR014721,InterPro:IPR020568,InterPro:IPR020574,InterPro:IPR023035,NCBI_GP:CAL22150.1;Name=CAL22150.1;Note=Similar to Escherichia coli 30S ribosomal protein S9 RpsI SW:RS9_ECOLI (P02363) (129 aa) fasta scores: E(): 0%2C92.2%25 id in 129 aa%2C and to Vibrio cholerae ribosomal protein S9 Vc0571 TR:Q9KUF0 (EMBL:AE004142) (130 aa) fasta scores: E(): 0%2C 86.9%25 id in 130 aa;gbkey=CDS;gene=rpsI;inference=similar to sequence:INSDC:AE004142;product=30S ribosomal protein S9;protein_id=CAL22150.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3975646	3976008	.	-	.	ID=id8537;Note=Pfam match to entry PF00380 Ribosomal_S9%2C Ribosomal protein S9/S16%2C score 239.60%2C E-value 6.8e-74;gbkey=misc_feature;gene=rpsI;inference=protein motif:PF00380
AL590842.1	EMBL	sequence_feature	3975775	3975831	.	-	.	ID=id8538;Note=PS00360 Ribosomal protein S9 signature.;gbkey=misc_feature;gene=rpsI;inference=protein motif:ProSite:PS00360
AL590842.1	EMBL	gene	3976050	3976478	.	-	.	ID=gene3508;Name=rplM;gbkey=Gene;gene=rplM;gene_biotype=protein_coding;locus_tag=YPO3563
AL590842.1	EMBL	CDS	3976050	3976478	.	-	0	ID=cds3460;Parent=gene3508;Dbxref=GOA:Q0WB88,InterPro:IPR005822,InterPro:IPR005823,InterPro:IPR023563,InterPro:IPR023564,NCBI_GP:CAL22151.1;Name=CAL22151.1;Note=Similar to Escherichia coli 50S ribosomal protein L13 RplM SW:RL13_ECOLI (P02410) (142 aa) fasta scores: E(): 0%2C 95.1%25 id in 142 aa%2C and to Haemophilus somnus 50S ribosomal protein L13 RplM TR:AAB20820 (EMBL:S75161) (142 aa) fasta scores: E(): 0%2C 90.1%25 id in 142 aa;gbkey=CDS;gene=rplM;inference=similar to sequence:INSDC:S75161;product=50S ribosomal protein L13;protein_id=CAL22151.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3976053	3976436	.	-	.	ID=id8539;Note=Pfam match to entry PF00572 Ribosomal_L13%2C Ribosomal protein L13%2C score 296.20%2C E-value 4e-85;gbkey=misc_feature;gene=rplM;inference=protein motif:PF00572
AL590842.1	EMBL	sequence_feature	3976098	3976166	.	-	.	ID=id8540;Note=PS00783 Ribosomal protein L13 signature.;gbkey=misc_feature;gene=rplM;inference=protein motif:ProSite:PS00783
AL590842.1	EMBL	gene	3976792	3977919	.	-	.	ID=gene3509;Name=YPO3564;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3564
AL590842.1	EMBL	CDS	3976792	3977919	.	-	0	ID=cds3461;Parent=gene3509;Dbxref=GOA:Q0WB87,InterPro:IPR005654,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WB87,NCBI_GP:CAL22152.1;Name=CAL22152.1;Note=Similar to Escherichia coli hypothetical protein YhcM SW:YHCM_ECOLI (P46442) (375 aa) fasta scores: E(): 0%2C65.6%25 id in 375 aa%2C and to Vibrio cholerae hypothetical protein VC0568 TR:Q9KUF3 (EMBL:AE004142) (367 aa) fasta scores: E(): 0%2C 54.2%25 id in 371 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004142;product=conserved hypothetical protein;protein_id=CAL22152.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3977662	3977685	.	-	.	ID=id8541;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3978143	3978547	.	+	.	ID=gene3510;Name=YPO3565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3565
AL590842.1	EMBL	CDS	3978143	3978547	.	+	0	ID=cds3462;Parent=gene3510;Dbxref=InterPro:IPR009386,UniProtKB/TrEMBL:Q7CL95,NCBI_GP:CAL22153.1;Name=CAL22153.1;Note=Similar to Escherichia coli hypothetical 15.2 kDa protein in rplM-hhoA intergenic region YhcB SW:YHCB_ECOLI (P39436) (134 aa) fasta scores: E(): 0%2C 80.3%25 id in 127 aa%2Cand to Vibrio cholerae hypothetical protein Vc0567 TR:Q9KUF4 (EMBL:AE004142) (145 aa) fasta scores: E(): 2.7e-20%2C 45.8%25 id in 131 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004142;product=putative membrane protein;protein_id=CAL22153.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3978155	3978214	.	+	.	ID=id8542;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3978818	3980191	.	+	.	ID=gene3511;Name=degQ;gbkey=Gene;gene=degQ;gene_biotype=protein_coding;gene_synonym=hhoA;locus_tag=YPO3566
AL590842.1	EMBL	CDS	3978818	3980191	.	+	0	ID=cds3463;Parent=gene3511;Dbxref=GOA:Q74PR7,InterPro:IPR001478,InterPro:IPR001940,InterPro:IPR009003,InterPro:IPR011782,UniProtKB/TrEMBL:Q74PR7,NCBI_GP:CAL22154.1;Name=CAL22154.1;Note=Similar to Escherichia coli protease precursor DegQ or HhoA SW:DEGQ_ECOLI (P39099) (455 aa) fasta scores: E(): 0%2C 72.1%25 id in 458 aa%2C and to Vibrio cholerae protease VC0566 TR:Q9KUF5 (EMBL:AE004142) (456 aa) fasta scores: E(): 0%2C 62.6%25 id in 457 aa. Similar to YPO3382 (58.0%25 identity in 483 aa overlap);gbkey=CDS;gene=degQ;inference=similar to sequence:INSDC:AE004142;product=protease;protein_id=CAL22154.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3979100	3979588	.	+	.	ID=id8543;Note=Pfam match to entry PF00089 trypsin%2C Trypsin%2C score 89.80%2C E-value 1.1e-27;gbkey=misc_feature;gene=degQ;inference=protein motif:PF00089
AL590842.1	EMBL	sequence_feature	3979592	3979867	.	+	.	ID=id8544;Note=Pfam match to entry PF00595 PDZ%2C PDZ domain (Also known as DHR or GLGF).%2C score 81.60%2C E-value 1.6e-20;gbkey=misc_feature;gene=degQ;inference=protein motif:PF00595
AL590842.1	EMBL	sequence_feature	3979820	3979843	.	+	.	ID=id8545;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=degQ;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3979919	3980161	.	+	.	ID=id8546;Note=Pfam match to entry PF00595 PDZ%2C PDZ domain (Also known as DHR or GLGF).%2C score 58.30%2C E-value 1.7e-13;gbkey=misc_feature;gene=degQ;inference=protein motif:PF00595
AL590842.1	EMBL	repeat_region	3980200	3980911	.	-	.	ID=id8547;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	3980308	3980766	.	-	.	ID=gene3512;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO3567
AL590842.1	EMBL	CDS	3980308	3980766	.	-	0	ID=cds3464;Parent=gene3512;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL22155.1;Name=CAL22155.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL22155.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3980401	3980712	.	-	.	ID=id8548;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	3980992	3982080	.	+	.	ID=gene3513;Name=degS;gbkey=Gene;gene=degS;gene_biotype=protein_coding;gene_synonym=hhoB,htrH;locus_tag=YPO3568
AL590842.1	EMBL	CDS	3980992	3982080	.	+	0	ID=cds3465;Parent=gene3513;Dbxref=GOA:Q7CL94,InterPro:IPR001254,InterPro:IPR001478,InterPro:IPR001940,InterPro:IPR009003,InterPro:IPR011783,UniProtKB/TrEMBL:Q7CL94,NCBI_GP:CAL22156.1;Name=CAL22156.1;Note=Similar to Escherichia coli protease precursor DegS or HhoB or HtrH SW:DEGS_ECOLI (P31137) (355 aa) fasta scores: E(): 0%2C 71.2%25 id in 351 aa%2C and to Vibrio cholerae protease DegS VC0565 TR:Q9KUF6 (EMBL:AE004142) (352 aa) fasta scores: E(): 0%2C 52.2%25 id in 345 aa;gbkey=CDS;gene=degS;inference=similar to sequence:INSDC:AE004142;product=protease;protein_id=CAL22156.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3980992	3981057	.	+	.	ID=id8549;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=degS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3981079	3981102	.	+	.	ID=id8550;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=degS;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3981166	3981723	.	+	.	ID=id8551;Note=Pfam match to entry PF00089 trypsin%2C Trypsin%2C score 88.30%2C E-value 3.4e-27;gbkey=misc_feature;gene=degS;inference=protein motif:PF00089
AL590842.1	EMBL	sequence_feature	3981730	3982002	.	+	.	ID=id8552;Note=Pfam match to entry PF00595 PDZ%2C PDZ domain (Also known as DHR or GLGF).%2C score 68.50%2C E-value 1.4e-16;gbkey=misc_feature;gene=degS;inference=protein motif:PF00595
AL590842.1	EMBL	gene	3982261	3983523	.	-	.	ID=gene3514;Name=murA;gbkey=Gene;gene=murA;gene_biotype=protein_coding;gene_synonym=murZ;locus_tag=YPO3569
AL590842.1	EMBL	CDS	3982261	3983523	.	-	0	ID=cds3466;Parent=gene3514;Dbxref=GOA:Q8ZB56,InterPro:IPR001986,InterPro:IPR005750,InterPro:IPR013792,NCBI_GP:CAL22157.1;Name=CAL22157.1;Note=Similar to Enterobacter cloacae UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA or MurZ SW:MURA_ENTCL (P33038) (419 aa) fasta scores: E(): 0%2C91.7%25 id in 420 aa%2C and to Escherichia coli UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA or MurZ SW:MURA_ECOLI (P28909) (419 aa) fasta scores: E(): 0%2C88.8%25 id in 420 aa;gbkey=CDS;gene=murA;product=UDP-N-acetylglucosamine 1-carboxyvinyltransferase;protein_id=CAL22157.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3982303	3983508	.	-	.	ID=id8553;Note=Pfam match to entry PF00275 EPSP_syntase%2C EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)%2Cscore 610.10%2C E-value 1.3e-179;gbkey=misc_feature;gene=murA;inference=protein motif:PF00275
AL590842.1	EMBL	gene	3983677	3983940	.	-	.	ID=gene3515;Name=YPO3570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3570
AL590842.1	EMBL	CDS	3983677	3983940	.	-	0	ID=cds3467;Parent=gene3515;Dbxref=InterPro:IPR002634,UniProtKB/TrEMBL:Q7CL93,NCBI_GP:CAL22158.1;Name=CAL22158.1;Note=Similar to Escherichia coli hypothetical protein YrbA SW:YRBA_ECOLI (P43781) (84 aa) fasta scores: E(): 3.8e-28%2C 81.0%25 id in 84 aa%2C and to Shigella flexneri YrbA TR:Q9RHA0 (EMBL:AF053073) (89 aa) fasta scores: E(): 4e-28%2C81.0%25 id in 84 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF053073;product=BolA-like protein;protein_id=CAL22158.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3983707	3983931	.	-	.	ID=id8554;Note=Pfam match to entry PF01722 BolA%2C BolA-like protein%2Cscore 115.90%2C E-value 7.4e-31;gbkey=misc_feature;inference=protein motif:PF01722
AL590842.1	EMBL	gene	3984078	3984380	.	-	.	ID=gene3516;Name=YPO3571;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3571
AL590842.1	EMBL	CDS	3984078	3984380	.	-	0	ID=cds3468;Parent=gene3516;Dbxref=InterPro:IPR002645,UniProtKB/TrEMBL:Q7CL92,NCBI_GP:CAL22159.1;Name=CAL22159.1;Note=Similar to Listeria monocytogenes anti-sigma b factor antagonist RsbV SW:RSBV_LISMO (O85016) (114 aa) fasta scores: E(): 0.013%2C 31.9%25 id in 91 aa%2C and to Escherichia coli hypothetical protein YrbB SW:YRBB_ECOLI (P45389) (129 aa) fasta scores: E(): 2.6e-13%2C 41.7%25 id in 96 aa;gbkey=CDS;product=putative anti-sigma B factor antagonist;protein_id=CAL22159.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3984084	3984371	.	-	.	ID=id8555;Note=Pfam match to entry PF01740 STAS%2C STAS domain%2C score 31.40%2C E-value 2.1e-05;gbkey=misc_feature;inference=protein motif:PF01740
AL590842.1	EMBL	gene	3984416	3985039	.	-	.	ID=gene3517;Name=yrbC;gbkey=Gene;gene=yrbC;gene_biotype=protein_coding;locus_tag=YPO3572
AL590842.1	EMBL	CDS	3984416	3985039	.	-	0	ID=cds3469;Parent=gene3517;Dbxref=InterPro:IPR008869,InterPro:IPR023094,UniProtKB/TrEMBL:Q7CL91,NCBI_GP:CAL22160.1;Name=CAL22160.1;Note=Similar to Escherichia coli hypothetical 24.0 kDa protein in murA-rpoN intergenic region precursor YrbC SW:YRBC_ECOLI (P45390) (211 aa) fasta scores: E(): 0%2C 77.5%25 id in 209 aa%2C and to Shigella flexneri YrbC TR:AAF21249 (EMBL:AF053073) (211 aa) fasta scores: E(): 0%2C 77.5%25 id in 209 aa;gbkey=CDS;gene=yrbC;inference=similar to sequence:INSDC:AF053073;product=putative exported protein;protein_id=CAL22160.1;transl_table=11
AL590842.1	EMBL	gene	3985052	3985609	.	-	.	ID=gene3518;Name=yrbD;gbkey=Gene;gene=yrbD;gene_biotype=protein_coding;locus_tag=YPO3573
AL590842.1	EMBL	CDS	3985052	3985609	.	-	0	ID=cds3470;Parent=gene3518;Dbxref=InterPro:IPR003399,UniProtKB/TrEMBL:Q0WB78,NCBI_GP:CAL22161.1;Name=CAL22161.1;Note=Similar to Escherichia coli hypothetical 19.6 kDa protein in murA-rpoN intergenic region precursor YrbD SW:YRBD_ECOLI (P45391) (183 aa) fasta scores: E(): 0%2C 69.1%25 id in 181 aa%2C and to Shigella flexneri VpsC TR:Q9RHA1 (EMBL:AF053073) (183 aa) fasta scores: E(): 0%2C 68.5%25 id in 181 aa;gbkey=CDS;gene=yrbD;inference=similar to sequence:INSDC:AF053073;product=putative membrane protein;protein_id=CAL22161.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3985139	3985582	.	-	.	ID=id8556;Note=Pfam match to entry PF02470 mce%2C %2C score 143.20%2CE-value 4.7e-39;gbkey=misc_feature;gene=yrbD;inference=protein motif:PF02470
AL590842.1	EMBL	sequence_feature	3985520	3985585	.	-	.	ID=id8557;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=yrbD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3985614	3986396	.	-	.	ID=gene3519;Name=yrbE;gbkey=Gene;gene=yrbE;gene_biotype=protein_coding;locus_tag=YPO3574
AL590842.1	EMBL	CDS	3985614	3986396	.	-	0	ID=cds3471;Parent=gene3519;Dbxref=InterPro:IPR003453,UniProtKB/TrEMBL:Q7CL90,NCBI_GP:CAL22162.1;Name=CAL22162.1;Note=Similar to Escherichia coli hypothetical 27.9 kDa protein in murA-rpoN intergenic region YrbE SW:YRBE_ECOLI (P45392) (260 aa) fasta scores: E(): 0%2C 82.7%25 id in 260 aa%2Cand to Vibrio cholerae hypothetical protein Vc2519 TR:Q9KP57 (EMBL:AE004321) (258 aa) fasta scores: E(): 0%2C78.0%25 id in 255 aa;gbkey=CDS;gene=yrbE;inference=similar to sequence:INSDC:AE004321;product=putative membrane protein;protein_id=CAL22162.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3985623	3986360	.	-	.	ID=id8558;Note=Pfam match to entry PF02405 DUF140%2C %2C score 438.60%2CE-value 5.5e-128;gbkey=misc_feature;gene=yrbE;inference=protein motif:PF02405
AL590842.1	EMBL	sequence_feature	3985623	3985679	.	-	.	ID=id8559;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yrbE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3985740	3985805	.	-	.	ID=id8560;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yrbE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3985887	3985952	.	-	.	ID=id8561;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yrbE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3986181	3986246	.	-	.	ID=id8562;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yrbE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3986292	3986357	.	-	.	ID=id8563;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yrbE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3986614	3987432	.	-	.	ID=gene3520;Name=yrbF;gbkey=Gene;gene=yrbF;gene_biotype=protein_coding;locus_tag=YPO3575
AL590842.1	EMBL	CDS	3986614	3987432	.	-	0	ID=cds3472;Parent=gene3520;Dbxref=GOA:Q7CL89,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CL89,NCBI_GP:CAL22163.1;Name=CAL22163.1;Note=Similar to Escherichia coli hypothetical ABC transporter ATP-binding protein in murA-rpoN intergenic region YrbF SW:YRBF_ECOLI (P45393) (269 aa) fasta scores: E(): 0%2C 78.2%25 id in 266 aa%2C and to Vibrio cholerae ABC transporter%2C ATP-binding protein Vc2520 TR:Q9KP56 (EMBL:AE004321) (267 aa) fasta scores: E(): 0%2C 72.2%25 id in 263 aa;gbkey=CDS;gene=yrbF;inference=similar to sequence:INSDC:AE004321;product=putative ABC transporter ATP-binding protein;protein_id=CAL22163.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3986761	3987324	.	-	.	ID=id8564;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 190.60%2C E-value 2.6e-53;gbkey=misc_feature;gene=yrbF;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	3986947	3986991	.	-	.	ID=id8565;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=yrbF;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	3987280	3987303	.	-	.	ID=id8566;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=yrbF;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3987697	3988671	.	+	.	ID=gene3521;Name=yrbG;gbkey=Gene;gene=yrbG;gene_biotype=protein_coding;locus_tag=YPO3576
AL590842.1	EMBL	CDS	3987697	3988671	.	+	0	ID=cds3473;Parent=gene3521;Dbxref=GOA:Q7CL88,InterPro:IPR004481,InterPro:IPR004837,UniProtKB/TrEMBL:Q7CL88,NCBI_GP:CAL22164.1;Name=CAL22164.1;Note=Similar to Escherichia coli hypothetical 34.7 kDa protein in murA-rpoN intergenic region YrbG SW:YRBG_ECOLI (P45394) (325 aa) fasta scores: E(): 0%2C 60.6%25 id in 322 aa%2Cand to Vibrio cholerae hypothetical protein Vc2522 TR:Q9KP54 (EMBL:AE004322) (332 aa) fasta scores: E(): 0%2C55.1%25 id in 314 aa;gbkey=CDS;gene=yrbG;inference=similar to sequence:INSDC:AE004322;product=putative sodium/calcium exchanger protein;protein_id=CAL22164.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3987700	3987768	.	+	.	ID=id8567;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=yrbG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3987733	3988149	.	+	.	ID=id8568;Note=Pfam match to entry PF01699 Na_Ca_Ex%2C Sodium/calcium exchanger protein%2C score 145.80%2C E-value 7.4e-40;gbkey=misc_feature;gene=yrbG;inference=protein motif:PF01699
AL590842.1	EMBL	sequence_feature	3987811	3987879	.	+	.	ID=id8569;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=yrbG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3987916	3987984	.	+	.	ID=id8570;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=yrbG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3988084	3988152	.	+	.	ID=id8571;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=yrbG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3988213	3988281	.	+	.	ID=id8572;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=yrbG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3988246	3988668	.	+	.	ID=id8573;Note=Pfam match to entry PF01699 Na_Ca_Ex%2C Sodium/calcium exchanger protein%2C score 156.50%2C E-value 4.5e-43;gbkey=misc_feature;gene=yrbG;inference=protein motif:PF01699
AL590842.1	EMBL	sequence_feature	3988324	3988392	.	+	.	ID=id8574;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=yrbG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3988411	3988479	.	+	.	ID=id8575;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=yrbG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3988522	3988575	.	+	.	ID=id8576;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=yrbG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	3988594	3988662	.	+	.	ID=id8577;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=yrbG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	3988782	3989768	.	+	.	ID=gene3522;Name=YPO3577;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3577
AL590842.1	EMBL	CDS	3988782	3989768	.	+	0	ID=cds3474;Parent=gene3522;Dbxref=GOA:Q8D1Q8,InterPro:IPR000644,InterPro:IPR001347,InterPro:IPR004800,NCBI_GP:CAL22165.1;Name=CAL22165.1;Note=Similar to Escherichia coli hypothetical protein YrbH SW:YRBH_ECOLI (P45395) (328 aa) fasta scores: E(): 0%2C77.4%25 id in 328 aa%2C and to Vibrio cholerae hypothetical protein VC2523 TR:Q9KP53 (EMBL:AE004322) (326 aa) fasta scores: E(): 0%2C 65.5%25 id in 319 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004322;product=conserved hypothetical protein;protein_id=CAL22165.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3988908	3989312	.	+	.	ID=id8578;Note=Pfam match to entry PF01380 SIS%2C SIS domain%2C score 134.00%2C E-value 2.7e-36;gbkey=misc_feature;inference=protein motif:PF01380
AL590842.1	EMBL	sequence_feature	3989409	3989570	.	+	.	ID=id8579;Note=Pfam match to entry PF00571 CBS%2C CBS domain%2C score 45.70%2C E-value 1e-09;gbkey=misc_feature;inference=protein motif:PF00571
AL590842.1	EMBL	sequence_feature	3989604	3989762	.	+	.	ID=id8580;Note=Pfam match to entry PF00571 CBS%2C CBS domain%2C score 39.60%2C E-value 7e-08;gbkey=misc_feature;inference=protein motif:PF00571
AL590842.1	EMBL	gene	3990017	3990580	.	+	.	ID=gene3523;Name=YPO3578;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3578
AL590842.1	EMBL	CDS	3990017	3990580	.	+	0	ID=cds3475;Parent=gene3523;Dbxref=GOA:Q8ZB47,InterPro:IPR010023,InterPro:IPR023214,PDB:3IJ5,NCBI_GP:CAL22166.1;Name=CAL22166.1;Note=Similar to Escherichia coli hypothetical protein YrbI SW:YRBI_ECOLI (P45396) (188 aa) fasta scores: E(): 0%2C77.0%25 id in 183 aa%2C and to Vibrio cholerae hypothetical protein VC2524 TR:Q9KP52 (EMBL:AE004322) (185 aa) fasta scores: E(): 0%2C 59.4%25 id in 187 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004322;product=conserved hypothetical protein;protein_id=CAL22166.1;transl_table=11
AL590842.1	EMBL	gene	3990577	3991140	.	+	.	ID=gene3524;Name=yrbK;gbkey=Gene;gene=yrbK;gene_biotype=protein_coding;locus_tag=YPO3579
AL590842.1	EMBL	CDS	3990577	3991140	.	+	0	ID=cds3476;Parent=gene3524;Dbxref=GOA:Q7CL87,InterPro:IPR010664,InterPro:IPR026265,UniProtKB/TrEMBL:Q7CL87,NCBI_GP:CAL22167.1;Name=CAL22167.1;Note=Similar to Escherichia coli hypothetical 21.7 kDa protein in murA-rpoN intergenic region YrbK SW:YRBK_ECOLI (P45397) (191 aa) fasta scores: E(): 0%2C 55.9%25 id in 186 aa;gbkey=CDS;gene=yrbK;product=putative exported protein;protein_id=CAL22167.1;transl_table=11
AL590842.1	EMBL	gene	3991124	3991669	.	+	.	ID=gene3525;Name=YPO3580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3580
AL590842.1	EMBL	CDS	3991124	3991669	.	+	0	ID=cds3477;Parent=gene3525;Dbxref=GOA:Q0WB71,InterPro:IPR005653,InterPro:IPR014340,UniProtKB/TrEMBL:Q0WB71,NCBI_GP:CAL22168.1;Name=CAL22168.1;Note=Similar to Escherichia coli protein YhbN precursor SW:YHBN_ECOLI (P38685) (185 aa) fasta scores: E(): 0%2C 67.2%25 id in 183 aa%2C and to Pasteurella multocida hypothetical protein PM0172 TR:AAK02256 (EMBL:AE006051) (170 aa) fasta scores: E(): 6.9e-30%2C 53.8%25 id in 171 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE006051;product=conserved hypothetical protein;protein_id=CAL22168.1;transl_table=11
AL590842.1	EMBL	gene	3991676	3992401	.	+	.	ID=gene3526;Name=yhbG;gbkey=Gene;gene=yhbG;gene_biotype=protein_coding;locus_tag=YPO3581
AL590842.1	EMBL	CDS	3991676	3992401	.	+	0	ID=cds3478;Parent=gene3526;Dbxref=GOA:Q7CL86,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CL86,NCBI_GP:CAL22169.1;Name=CAL22169.1;Note=Similar to Escherichia coli probable ABC transporter ATP-binding protein in murA-rpoN intergenic region YhbG SW:YHBG_ECOLI (P31220) (240 aa) fasta scores: E(): 0%2C 87.5%25 id in 240 aa%2C and to Haemophilus influenzae probable ABC transporter ATP-binding protein Hi1148 SW:YHBG_HAEIN (P45073) (241 aa) fasta scores: E(): 0%2C 78.8%25 id in 241 aa;gbkey=CDS;gene=yhbG;product=probable ABC transporter ATP-binding protein;protein_id=CAL22169.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3991760	3992314	.	+	.	ID=id8581;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 224.70%2C E-value 1.4e-63;gbkey=misc_feature;gene=yhbG;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	3991781	3991804	.	+	.	ID=id8582;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=yhbG;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	3992087	3992131	.	+	.	ID=id8583;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=yhbG;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	3992463	3993896	.	+	.	ID=gene3527;Name=glnF;gbkey=Gene;gene=glnF;gene_biotype=protein_coding;gene_synonym=ntrA,rpoN;locus_tag=YPO3582
AL590842.1	EMBL	CDS	3992463	3993896	.	+	0	ID=cds3479;Parent=gene3527;Dbxref=GOA:Q7CL85,InterPro:IPR000394,InterPro:IPR007046,InterPro:IPR007634,UniProtKB/TrEMBL:Q7CL85,NCBI_GP:CAL22170.1;Name=CAL22170.1;Note=Similar to Escherichia coli RNA polymerase sigma-54 factor RpoN or GlnF or NtrA SW:RP54_ECOLI (P24255) (477 aa) fasta scores: E(): 0%2C 82.6%25 id in 477 aa%2C and to Klebsiella pneumoniae RNA polymerase sigma-54 factor RpoN or NtrA SW:RP54_KLEPN (P06223) (477 aa) fasta scores: E(): 0%2C 82.4%25 id in 477 aa;gbkey=CDS;gene=glnF;product=RNA polymerase sigma-54 factor;protein_id=CAL22170.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3992463	3993887	.	+	.	ID=id8584;Note=Pfam match to entry PF00309 Sigma54_factors%2CSigma-54 factors family%2C score 873.90%2C E-value 5e-259;gbkey=misc_feature;gene=glnF;inference=protein motif:PF00309
AL590842.1	EMBL	sequence_feature	3992478	3992597	.	+	.	ID=id8585;Note=PS00041 Bacterial regulatory proteins%2C araC family signature.;gbkey=misc_feature;gene=glnF;inference=protein motif:ProSite:PS00041
AL590842.1	EMBL	sequence_feature	3993552	3993611	.	+	.	ID=id8586;Note=PS00717 Sigma-54 factors family signature 1.;gbkey=misc_feature;gene=glnF;inference=protein motif:ProSite:PS00717
AL590842.1	EMBL	sequence_feature	3993555	3993620	.	+	.	ID=id8587;Note=Predicted helix-turn-helix motif with score 1825 (+5.40 SD) at aa 365-386%2C sequence MVLADIAQAVDMHESTISRVTT;gbkey=misc_feature;gene=glnF
AL590842.1	EMBL	sequence_feature	3993825	3993848	.	+	.	ID=id8588;Note=PS00718 Sigma-54 factors family signature 2.;gbkey=misc_feature;gene=glnF;inference=protein motif:ProSite:PS00718
AL590842.1	EMBL	pseudogene	3993920	3994207	.	+	.	ID=gene3528;Name=yhbH;gbkey=Gene;gene=yhbH;gene_biotype=pseudogene;locus_tag=YPO3583;pseudo=true
AL590842.1	EMBL	CDS	3993920	3994207	.	+	0	ID=cds3480;Parent=gene3528;Note=Similar to Salmonella typhimurium probable sigma (54) modulation protein YhbH SW:RP5M_SALTY (P26983) (95 aa) fasta scores: E(): 1.5e-29%2C 82.1%25 id in 95 aa%2C and to Escherichia coli probable sigma (54) modulation protein YhbH SW:RP5M_ECOLI (P31221) (95 aa) fasta scores: E(): 9.6e-29%2C 81.1%25 id in 95 aa. There is a stop codon at position 36. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=yhbH;product=probable sigma (54) modulation protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	3994034	3994204	.	+	.	ID=id8589;Note=Pfam match to entry PF02482 Ribosomal_S30%2C %2C score 45.80%2C E-value 9.7e-10;gbkey=misc_feature;gene=yhbH;inference=protein motif:PF02482
AL590842.1	EMBL	gene	3994325	3994807	.	+	.	ID=gene3529;Name=ptsN;gbkey=Gene;gene=ptsN;gene_biotype=protein_coding;gene_synonym=rpoP;locus_tag=YPO3585
AL590842.1	EMBL	CDS	3994325	3994807	.	+	0	ID=cds3481;Parent=gene3529;Dbxref=GOA:Q0WB68,InterPro:IPR002178,InterPro:IPR006320,InterPro:IPR016152,UniProtKB/TrEMBL:Q0WB68,NCBI_GP:CAL22172.1;Name=CAL22172.1;Note=Similar to Escherichia coli nitrogen regulatory IIA protein PtsN or RpoP SW:PTSN_ECOLI (P31222) (163 aa) fasta scores: E(): 0%2C 86.2%25 id in 152 aa%2C and to Klebsiella pneumoniae nitrogen regulatory IIA protein PtsN SW:PTSN_KLEPN (P17162) (162 aa) fasta scores: E(): 0%2C 84.4%25 id in 154 aa;gbkey=CDS;gene=ptsN;product=nitrogen regulatory IIA protein;protein_id=CAL22172.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3994412	3994600	.	+	.	ID=id8590;Note=Pfam match to entry PF00359 PTS_EIIA_2%2Cphosphoenolpyruvate-dependent sugar phosphotransferase system%2C EIIA 2%2C score 80.70%2C E-value 2.9e-21;gbkey=misc_feature;gene=ptsN;inference=protein motif:PF00359
AL590842.1	EMBL	sequence_feature	3994493	3994543	.	+	.	ID=id8591;Note=PS00372 PTS EIIA domains phosphorylation site signature 2.;gbkey=misc_feature;gene=ptsN;inference=protein motif:ProSite:PS00372
AL590842.1	EMBL	gene	3995113	3995967	.	+	.	ID=gene3530;Name=YPO3586;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3586
AL590842.1	EMBL	CDS	3995113	3995967	.	+	0	ID=cds3482;Parent=gene3530;Dbxref=GOA:Q8ZB41,InterPro:IPR005337,InterPro:IPR027417,NCBI_GP:CAL22173.1;Name=CAL22173.1;Note=Similar to Escherichia coli hypothetical protein YhbJ SW:YHBJ_ECOLI (P33995) (284 aa) fasta scores: E(): 0%2C94.3%25 id in 283 aa%2C and to Klebsiella pneumoniae hypothetical protein YhbJ SW:YHBJ_KLEPN (P17163) (284 aa) fasta scores: E(): 0%2C 94.3%25 id in 283 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL22173.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3995134	3995157	.	+	.	ID=id8592;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	3995964	3996236	.	+	.	ID=gene3531;Name=npr;gbkey=Gene;gene=npr;gene_biotype=protein_coding;gene_synonym=ptsO,rpoR;locus_tag=YPO3587
AL590842.1	EMBL	CDS	3995964	3996236	.	+	0	ID=cds3483;Parent=gene3531;Dbxref=GOA:Q7CL84,InterPro:IPR000032,InterPro:IPR001020,UniProtKB/TrEMBL:Q7CL84,NCBI_GP:CAL22174.1;Name=CAL22174.1;Note=Similar to Escherichia coli phosphocarrier protein Npr SW:PTSO_ECOLI (P33996) (90 aa) fasta scores: E(): 1.2e-29%2C 87.8%25 id in 90 aa%2C and to Klebsiella pneumoniae phosphocarrier protein Npr SW:PTSO_KLEPN (P51185) (90 aa) fasta scores: E(): 1.1e-28%2C 82.2%25 id in 90 aa;gbkey=CDS;gene=npr;product=putative phosphocarrier protein;protein_id=CAL22174.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3995967	3996200	.	+	.	ID=id8593;Note=Pfam match to entry PF00381 PTS-HPr%2C PTS HPr component phosphorylation sites%2C score 117.90%2C E-value 1.9e-31;gbkey=misc_feature;gene=npr;inference=protein motif:PF00381
AL590842.1	EMBL	sequence_feature	3996003	3996026	.	+	.	ID=id8594;Note=PS00369 PTS HPR component histidine phosphorylation site signature.;gbkey=misc_feature;gene=npr;inference=protein motif:ProSite:PS00369
AL590842.1	EMBL	gene	3996574	3997509	.	+	.	ID=gene3532;Name=pyrB;gbkey=Gene;gene=pyrB;gene_biotype=protein_coding;locus_tag=YPO3588
AL590842.1	EMBL	CDS	3996574	3997509	.	+	0	ID=cds3484;Parent=gene3532;Dbxref=GOA:Q8ZB39,InterPro:IPR002082,InterPro:IPR006130,InterPro:IPR006131,InterPro:IPR006132,PDB:3LXM,NCBI_GP:CAL22175.1;Name=CAL22175.1;Note=Similar to Escherichia coli aspartate carbamoyltransferase catalytic chain PyrB SW:PYRB_ECOLI (P00479) (310 aa) fasta scores: E(): 0%2C 84.8%25 id in 310 aa%2Cand to Erwinia herbicola aspartate transcarbamylase catalytic subunit PyrB TR:Q9RMS8 (EMBL:AF190426) (311 aa) fasta scores: E(): 0%2C 85.9%25 id in 311 aa;gbkey=CDS;gene=pyrB;inference=similar to sequence:INSDC:AF190426;product=aspartate carbamoyltransferase catalytic subunit;protein_id=CAL22175.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3996595	3997488	.	+	.	ID=id8595;Note=Pfam match to entry PF00185 OTCace%2CAspartate/ornithine carbamoyltransferase%2C score 466.80%2CE-value 1.8e-136;gbkey=misc_feature;gene=pyrB;inference=protein motif:PF00185
AL590842.1	EMBL	sequence_feature	3996718	3996741	.	+	.	ID=id8596;Note=PS00097 Aspartate and ornithine carbamoyltransferases signature.;gbkey=misc_feature;gene=pyrB;inference=protein motif:ProSite:PS00097
AL590842.1	EMBL	gene	3997521	3997985	.	+	.	ID=gene3533;Name=pyrI;gbkey=Gene;gene=pyrI;gene_biotype=protein_coding;locus_tag=YPO3589
AL590842.1	EMBL	CDS	3997521	3997985	.	+	0	ID=cds3485;Parent=gene3533;Dbxref=GOA:Q8ZB38,InterPro:IPR002801,InterPro:IPR020542,InterPro:IPR020545,NCBI_GP:CAL22176.1;Name=CAL22176.1;Note=Similar to Escherichia coli aspartate carbamoyltransferase regulatory chain PyrI SW:PYRI_ECOLI (P00478) (152 aa) fasta scores: E(): 0%2C 78.7%25 id in 150 aa%2Cand to Serratia marcescens aspartate carbamoyltransferase regulatory chain PyrI SW:PYRI_SERMA (P19936) (153 aa) fasta scores: E(): 0%2C 83.0%25 id in 153 aa;gbkey=CDS;gene=pyrI;product=aspartate carbamoyltransferase regulatory chain;protein_id=CAL22176.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3997530	3997970	.	+	.	ID=id8597;Note=Pfam match to entry PF01948 PyrI%2C Aspartate carbamoyltransferase regulatory chain%2C score 322.80%2CE-value 4.1e-93;gbkey=misc_feature;gene=pyrI;inference=protein motif:PF01948
AL590842.1	EMBL	gene	3998123	3998509	.	+	.	ID=gene3534;Name=YPO3590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3590
AL590842.1	EMBL	CDS	3998123	3998509	.	+	0	ID=cds3486;Parent=gene3534;Dbxref=GOA:Q0WB63,InterPro:IPR006056,InterPro:IPR006175,InterPro:IPR013813,InterPro:IPR019897,UniProtKB/TrEMBL:Q0WB63,NCBI_GP:CAL22177.1;Name=CAL22177.1;Note=Similar to Salmonella typhimurium YjgF protein TR:Q9X445 (EMBL:AF095578) (128 aa) fasta scores: E(): 0%2C85.9%25 id in 128 aa%2C and to Escherichia coli hypothetical protein YjgF SW:YJGF_ECOLI (P39330) (127 aa) fasta scores: E(): 0%2C 84.9%25 id in 126 aa. Similar to YPO1669 (55.4%25 identity in 121 aa overlap) and to YPO0627 (48.4%25 identity in 126 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AF095578;product=conserved hypothetical protein;protein_id=CAL22177.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3998141	3998503	.	+	.	ID=id8598;Note=Pfam match to entry PF01042 UPF0076%2C Domain of unknown function UPF0076%2C score 225.40%2C E-value 8.1e-64;gbkey=misc_feature;inference=protein motif:PF01042
AL590842.1	EMBL	sequence_feature	3998429	3998485	.	+	.	ID=id8599;Note=PS01094 Uncharacterized protein family UPF0076 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01094
AL590842.1	EMBL	repeat_region	3998764	4000717	.	+	.	ID=id8600;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	3998764	3998791	.	+	.	ID=id8601;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	3998850	3999872	.	+	.	ID=gene3535;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO3591
AL590842.1	EMBL	CDS	3998850	3999872	.	+	0	ID=cds3487;Parent=gene3535;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL22178.1;Name=CAL22178.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL22178.1;transl_table=11
AL590842.1	EMBL	sequence_feature	3998874	3998957	.	+	.	ID=id8602;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	sequence_feature	3998901	3998966	.	+	.	ID=id8603;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	3999195	3999728	.	+	.	ID=id8604;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	gene	3999869	4000651	.	+	.	ID=gene3536;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO3592
AL590842.1	EMBL	CDS	3999869	4000651	.	+	0	ID=cds3488;Parent=gene3536;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL22179.1;Name=CAL22179.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL22179.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4000037	4000576	.	+	.	ID=id8605;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	4000196	4000219	.	+	.	ID=id8606;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	INVERTED	4000690	4000717	.	-	.	ID=id8607;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	sequence_feature	4000715	4000979	.	-	.	ID=id8608;Note=Truncated IS1397-like insertion element: IS1661.;gbkey=misc_feature
AL590842.1	EMBL	gene	4000721	4000924	.	-	.	ID=gene3537;Name=YPO3592A;end_range=4000924,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3592A;partial=true;start_range=.,4000721
AL590842.1	EMBL	CDS	4000721	4000924	.	-	0	ID=cds3489;Parent=gene3537;Dbxref=GOA:Q0WB60,InterPro:IPR010921,InterPro:IPR011991,UniProtKB/TrEMBL:Q0WB60,NCBI_GP:CAL22180.1;Name=CAL22180.1;Note=Gene fragment that is similar to Escherichia coli insertion element IS1397 OrfA hypothetical 20.1 kDa protein SW:YI9A_ECOLI (Q47309) (173 aa) fasta scores: E(): 2.3e-20%2C39.6%25 id in 169 aa%3B~was marked partial;end_range=4000924,.;gbkey=CDS;partial=true;product=insertion element IS1661 protein (gene fragment);protein_id=CAL22180.1;start_range=.,4000721;transl_table=11
AL590842.1	EMBL	INVERTED	4000957	4000979	.	-	.	ID=id8609;Note=Inverted repeat for IS1661 insertion element;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	pseudogene	4000981	4001718	.	+	.	ID=gene3538;Name=YPO3593;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO3593;pseudo=true
AL590842.1	EMBL	CDS	4000981	4001718	.	+	0	ID=cds3490;Parent=gene3538;Note=The 5'-region of this CDS has been deleted by either the original IS1661 insertion or by the subsequent insertion of a IS100 element. Similar to Vibrio cholerae hypothetical protein Vca0110 TR:Q9KN55 (EMBL:AE004353) (589 aa) fasta scores: E(): 0%2C 55.5%25 id in 245 aa and to Escherichia coli O157:H7 Z0260 hypothetical protein TR:AAG54529 (EMBL:AE005198) (616 aa) fasta scores: E(): 0%2C53.9%25 id in 245 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE005198;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	4001721	4002770	.	+	.	ID=gene3539;Name=YPO3594;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3594
AL590842.1	EMBL	CDS	4001721	4002770	.	+	0	ID=cds3491;Parent=gene3539;Dbxref=InterPro:IPR010732,UniProtKB/TrEMBL:Q0WB59,NCBI_GP:CAL22182.1;Name=CAL22182.1;Note=Similar to Vibrio cholerae hypothetical protein VCA0111 TR:Q9KN54 (EMBL:AE004353) (338 aa) fasta scores: E(): 3.1e-32%2C 40.6%25 id in 340 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA1661 TR:AAG05050 (EMBL:AE004594) (335 aa) fasta scores: E(): 5.7e-21%2C 34.5%25 id in 345 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004594;product=conserved hypothetical protein;protein_id=CAL22182.1;transl_table=11
AL590842.1	EMBL	gene	4002896	4004212	.	+	.	ID=gene3540;Name=YPO3595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3595
AL590842.1	EMBL	CDS	4002896	4004212	.	+	0	ID=cds3492;Parent=gene3540;Dbxref=InterPro:IPR008984,InterPro:IPR017735,UniProtKB/TrEMBL:Q7CL26,NCBI_GP:CAL22183.1;Name=CAL22183.1;Note=Similar to Vibrio cholerae hypothetical protein VCA0112 TR:Q9KN53 (EMBL:AE004353) (495 aa) fasta scores: E(): 3.8e-28%2C 31.3%25 id in 486 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004353;product=conserved hypothetical protein;protein_id=CAL22183.1;transl_table=11
AL590842.1	EMBL	gene	4004212	4004757	.	+	.	ID=gene3541;Name=YPO3596;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3596
AL590842.1	EMBL	CDS	4004212	4004757	.	+	0	ID=cds3493;Parent=gene3541;Dbxref=InterPro:IPR017734,UniProtKB/TrEMBL:Q7CL27,NCBI_GP:CAL22184.1;Name=CAL22184.1;Note=Similar to Vibrio cholerae hypothetical protein Vca0113 TR:Q9KN52 (EMBL:AE004353) (158 aa) fasta scores: E(): 3e-16%2C 38.6%25 id in 132 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004353;product=putative lipoprotein;protein_id=CAL22184.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4004245	4004277	.	+	.	ID=id8610;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	4004760	4006106	.	+	.	ID=gene3542;Name=YPO3597;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3597
AL590842.1	EMBL	CDS	4004760	4006106	.	+	0	ID=cds3494;Parent=gene3542;Dbxref=InterPro:IPR010263,UniProtKB/TrEMBL:Q74PF4,NCBI_GP:CAL22185.1;Name=CAL22185.1;Note=Similar to Vibrio cholerae hypothetical protein VCA0114 TR:Q9KN51 (EMBL:AE004353) (444 aa) fasta scores: E(): 0%2C 49.0%25 id in 447 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0079 TR:AAG03469 (EMBL:AE004447) (444 aa) fasta scores: E(): 0%2C 40.8%25 id in 448 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004447;product=conserved hypothetical protein;protein_id=CAL22185.1;transl_table=11
AL590842.1	EMBL	gene	4006106	4006873	.	+	.	ID=gene3543;Name=YPO3598;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3598
AL590842.1	EMBL	CDS	4006106	4006873	.	+	0	ID=cds3495;Parent=gene3543;Dbxref=InterPro:IPR017732,UniProtKB/TrEMBL:Q7CL28,NCBI_GP:CAL22186.1;Name=CAL22186.1;Note=Similar to Vibrio cholerae hypothetical protein Vca0115 TR:Q9KN50 (EMBL:AE004353) (257 aa) fasta scores: E(): 0%2C 38.7%25 id in 243 aa%2C and to Pseudomonas aeruginosa hypothetical protein Pa0078 TR:AAG03468 (EMBL:AE004447) (449 aa) fasta scores: E(): 1.7e-22%2C 32.3%25 id in 229 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004447;product=putative membrane protein;protein_id=CAL22186.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4006760	4006828	.	+	.	ID=id8611;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4006884	4009487	.	+	.	ID=gene3544;Name=clpB2;gbkey=Gene;gene=clpB2;gene_biotype=protein_coding;locus_tag=YPO3599
AL590842.1	EMBL	CDS	4006884	4009487	.	+	0	ID=cds3496;Parent=gene3544;Dbxref=GOA:Q7CL29,InterPro:IPR001270,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR017729,InterPro:IPR018368,InterPro:IPR019489,InterPro:IPR023150,InterPro:IPR027417,InterPro:IPR028299,UniProtKB/TrEMBL:Q7CL29,NCBI_GP:CAL22187.1;Name=CAL22187.1;Note=Similar to Escherichia coli ClpB protein%2C which is thought to form part of a multi-chaperone system supressing protein aggregation%2C SW:CLPB_ECOLI (P03815) (857 aa) fasta scores: E(): 0%2C 40.4%25 id in 727 aa and Yersinia enterocolitica Clp protease-associated protein ClpB TR:AAG00524 (EMBL:AF285784) (890 aa) fasta scores: E(): 0%2C42.4%25 id in 863 aa. Also significantly similar to the products of the Y. pestis CDS: YPO0506%2C YPO0971%2C YPO1471%2CYPO2946 and YPO3275;gbkey=CDS;gene=clpB2;inference=similar to sequence:INSDC:AF285784;product=Clp ATPase;protein_id=CAL22187.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4007556	4007579	.	+	.	ID=id8612;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=clpB2;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	4007820	4007858	.	+	.	ID=id8613;Note=PS00870 Chaperonins clpA/B signature 1.;gbkey=misc_feature;gene=clpB2;inference=protein motif:ProSite:PS00870
AL590842.1	EMBL	sequence_feature	4008714	4008737	.	+	.	ID=id8614;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=clpB2;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4009484	4010281	.	+	.	ID=gene3545;Name=YPO3600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3600
AL590842.1	EMBL	CDS	4009484	4010281	.	+	0	ID=cds3497;Parent=gene3545;Dbxref=GOA:Q7CL30,InterPro:IPR009057,UniProtKB/TrEMBL:Q7CL30,NCBI_GP:CAL22188.1;Name=CAL22188.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22188.1;transl_table=11
AL590842.1	EMBL	gene	4010278	4010964	.	+	.	ID=gene3546;Name=YPO3601;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3601
AL590842.1	EMBL	CDS	4010278	4010964	.	+	0	ID=cds3498;Parent=gene3546;Dbxref=InterPro:IPR017738,UniProtKB/TrEMBL:Q0WB52,NCBI_GP:CAL22189.1;Name=CAL22189.1;Note=Similar to Vibrio cholerae hypothetical protein VCA0118 TR:Q9KN47 (EMBL:AE004353) (227 aa) fasta scores: E(): 5.4e-11%2C 31.6%25 id in 209 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004353;product=conserved hypothetical protein;protein_id=CAL22189.1;transl_table=11
AL590842.1	EMBL	gene	4010961	4012358	.	+	.	ID=gene3547;Name=YPO3602;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3602
AL590842.1	EMBL	CDS	4010961	4012358	.	+	0	ID=cds3499;Parent=gene3547;Dbxref=InterPro:IPR010657,InterPro:IPR017739,UniProtKB/TrEMBL:Q0WB51,NCBI_GP:CAL22190.1;Name=CAL22190.1;Note=Similar to Vibrio cholerae hypothetical protein VCA0119 TR:Q9KN46 (EMBL:AE004353) (469 aa) fasta scores: E(): 0%2C 36.4%25 id in 451 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004353;product=conserved hypothetical protein;protein_id=CAL22190.1;transl_table=11
AL590842.1	EMBL	gene	4012390	4015923	.	+	.	ID=gene3548;Name=YPO3603;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3603
AL590842.1	EMBL	CDS	4012390	4015923	.	+	0	ID=cds3500;Parent=gene3548;Dbxref=InterPro:IPR009612,InterPro:IPR010623,InterPro:IPR017731,InterPro:IPR025743,InterPro:IPR027417,UniProtKB/TrEMBL:Q74PG0,NCBI_GP:CAL22191.1;Name=CAL22191.1;Note=Similar to Vibrio cholerae IcmF-related protein vca0120 TR:Q9KN45 (EMBL:AE004353) (1181 aa) fasta scores: E(): 0%2C 37.3%25 id in 1183 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004353;product=putative exported protein;protein_id=CAL22191.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4012447	4012506	.	+	.	ID=id8615;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4012447	4012479	.	+	.	ID=id8616;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	4012549	4012617	.	+	.	ID=id8617;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4012795	4012818	.	+	.	ID=id8618;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	4013746	4013799	.	+	.	ID=id8619;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4016048	4016830	.	+	.	ID=gene3549;Name=YPO3604;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3604
AL590842.1	EMBL	CDS	4016048	4016830	.	+	0	ID=cds3501;Parent=gene3549;Dbxref=InterPro:IPR010657,UniProtKB/TrEMBL:Q74PG1,NCBI_GP:CAL22192.1;Name=CAL22192.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22192.1;transl_table=11
AL590842.1	EMBL	gene	4016827	4017360	.	+	.	ID=gene3550;Name=YPO3605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3605
AL590842.1	EMBL	CDS	4016827	4017360	.	+	0	ID=cds3502;Parent=gene3550;Dbxref=InterPro:IPR021069,UniProtKB/TrEMBL:Q74PG2,NCBI_GP:CAL22193.1;Name=CAL22193.1;Note=Similar to Arabidopsis thaliana F15P11.1 protein TR:Q9S9U2 (EMBL:AF160760) (187 aa) fasta scores: E(): 0.024%2C 31.5%25 id in 143 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF160760;product=conserved hypothetical protein;protein_id=CAL22193.1;transl_table=11
AL590842.1	EMBL	gene	4017382	4019784	.	+	.	ID=gene3551;Name=YPO3606;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3606
AL590842.1	EMBL	CDS	4017382	4019784	.	+	0	ID=cds3503;Parent=gene3551;Dbxref=InterPro:IPR006531,InterPro:IPR006533,InterPro:IPR017847,UniProtKB/TrEMBL:Q7CL31,NCBI_GP:CAL22194.1;Name=CAL22194.1;Note=Similar to Escherichia coli VgrG protein TR:O52672 (EMBL:AF044503) (713 aa) fasta scores: E(): 0%2C 49.9%25 id in 579 aa%2C and to Escherichia coli VgrE protein TR:O52660 (EMBL:AF044499) (702 aa) fasta scores: E(): 0%2C 49.3%25 id in 576 aa. Similar to YPO3613 (78.0%25 identity in 803 aa overlap) and to YPO0764 (77.2%25 identity in 615 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AF044503;product=putative Rhs accessory genetic element;protein_id=CAL22194.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4017421	4017441	.	+	.	ID=id8620;Note=PS00154 E1-E2 ATPases phosphorylation site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00154
AL590842.1	EMBL	sequence_feature	4019038	4019103	.	+	.	ID=id8621;Note=Predicted helix-turn-helix motif with score 1023 (+2.67 SD) at aa 553-574%2C sequence IRLQFLWDRYGQSNDNSSCWIR;gbkey=misc_feature
AL590842.1	EMBL	gene	4019790	4020248	.	+	.	ID=gene3552;Name=YPO3607;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3607
AL590842.1	EMBL	CDS	4019790	4020248	.	+	0	ID=cds3504;Parent=gene3552;Dbxref=InterPro:IPR014894,InterPro:IPR016123,UniProtKB/TrEMBL:Q7CL32,NCBI_GP:CAL22195.1;Name=CAL22195.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA0094 TR:AAG03484 (EMBL:AE004448) (144 aa) fasta scores: E(): 8.9e-06%2C 24.8%25 id in 141 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004448;product=conserved hypothetical protein;protein_id=CAL22195.1;transl_table=11
AL590842.1	EMBL	gene	4020241	4023105	.	+	.	ID=gene3553;Name=YPO3608;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3608
AL590842.1	EMBL	CDS	4020241	4023105	.	+	0	ID=cds3505;Parent=gene3553;Dbxref=InterPro:IPR006530,InterPro:IPR008727,UniProtKB/TrEMBL:Q0WB45,NCBI_GP:CAL22196.1;Name=CAL22196.1;Note=Similar to Escherichia coli CorE protein TR:O52666 (EMBL:AF044501) (1420 aa) fasta scores: E(): 8.3e-32%2C 27.7%25 id in 824 aa%2C and to Escherichia coli RhsD protein precursor SW:RHSD_ECOLI (P16919) (1426 aa) fasta scores: E(): 1.4e-28%2C 27.3%25 id in 842 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF044501;product=putative exported protein;protein_id=CAL22196.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4020298	4020366	.	+	.	ID=id8622;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4020385	4020453	.	+	.	ID=id8623;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4023133	4024503	.	+	.	ID=gene3554;Name=YPO3609;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3609
AL590842.1	EMBL	CDS	4023133	4024503	.	+	0	ID=cds3506;Parent=gene3554;Dbxref=GOA:Q7CL33,InterPro:IPR001826,InterPro:IPR022385,UniProtKB/TrEMBL:Q7CL33,NCBI_GP:CAL22197.1;Name=CAL22197.1;Note=Similar to Escherichia coli hypothetical CorE protein RhsD TR:AAA24544 (EMBL:L19084) (1426 aa) fasta scores: E(): 4.6e-14%2C 28.3%25 id in 473 aa%2C and to Escherichia coli RhsE protein SW:RHSE_ECOLI (P24211) (682 aa) fasta scores: E(): 1.6e-14%2C 26.8%25 id in 522 aa;gbkey=CDS;inference=similar to sequence:INSDC:L19084;product=conserved hypothetical protein;protein_id=CAL22197.1;transl_table=11
AL590842.1	EMBL	gene	4024505	4024990	.	+	.	ID=gene3555;Name=YPO3610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3610
AL590842.1	EMBL	CDS	4024505	4024990	.	+	0	ID=cds3507;Parent=gene3555;Dbxref=InterPro:IPR018958,UniProtKB/TrEMBL:Q7CL34,NCBI_GP:CAL22198.1;Name=CAL22198.1;Note=Similar to Bacillus subtilis YokK protein TR:O31996 (EMBL:Z99115) (192 aa) fasta scores: E(): 0.043%2C 26.6%25 id in 154 aa%2C and to Bacteriophage SPBc2 hypothetical protein YokK TR:O64025 (EMBL:AF020713) (192 aa) fasta scores: E(): 0.043%2C 26.6%25 id in 154 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z99115;product=conserved hypothetical protein;protein_id=CAL22198.1;transl_table=11
AL590842.1	EMBL	gene	4025040	4025231	.	-	.	ID=gene3556;Name=YPO3611;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3611
AL590842.1	EMBL	CDS	4025040	4025231	.	-	0	ID=cds3508;Parent=gene3556;Dbxref=GOA:Q7CL35,InterPro:IPR014944,UniProtKB/TrEMBL:Q7CL35,NCBI_GP:CAL22199.1;Name=CAL22199.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22199.1;transl_table=11
AL590842.1	EMBL	gene	4025613	4026020	.	-	.	ID=gene3557;Name=YPO3612;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3612
AL590842.1	EMBL	CDS	4025613	4026020	.	-	0	ID=cds3509;Parent=gene3557;Dbxref=GOA:Q0WB41,InterPro:IPR001387,InterPro:IPR010982,UniProtKB/TrEMBL:Q0WB41,NCBI_GP:CAL22200.1;Name=CAL22200.1;Note=Similar to Vibrio cholerae cryptic phage Ctxphi transcriptional repressor RstR (RstR1 or VC1455) and (RstR2 or VC1464) TR:O34419 (EMBL:U83796) (112 aa) fasta scores: E(): 6.8e-08%2C 33.6%25 id in 107 aa%2C and to Bacillus subtilis putative PbsX repressor Xre SW:XRE_BACSU (P23789) (113 aa) fasta scores: E(): 3.1e-05%2C 30.2%25 id in 106 aa;gbkey=CDS;inference=similar to sequence:INSDC:U83796;product=putative transcriptional regulatory protein;protein_id=CAL22200.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4025793	4025957	.	-	.	ID=id8624;Note=Pfam match to entry PF01381 HTH_3%2C Helix-turn-helix%2Cscore 66.90%2C E-value 4.3e-16;gbkey=misc_feature;inference=protein motif:PF01381
AL590842.1	EMBL	sequence_feature	4025865	4025930	.	-	.	ID=id8625;Note=Predicted helix-turn-helix motif with score 1221 (+3.35 SD) at aa 31-52%2C sequence KTQKEVATRIGLQLSQYNKYES;gbkey=misc_feature
AL590842.1	EMBL	gene	4026381	4028579	.	+	.	ID=gene3558;Name=YPO3613;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3613
AL590842.1	EMBL	CDS	4026381	4028579	.	+	0	ID=cds3510;Parent=gene3558;Dbxref=InterPro:IPR006531,InterPro:IPR006533,InterPro:IPR017847,UniProtKB/TrEMBL:Q0WB40,NCBI_GP:CAL22201.1;Name=CAL22201.1;Note=Similar to Escherichia coli VgrE protein TR:O52660 (EMBL:AF044499) (702 aa) fasta scores: E(): 0%2C 46.7%25 id in 599 aa%2C and to Escherichia coli VgrG protein TR:O52672 (EMBL:AF044503) (713 aa) fasta scores: E(): 0%2C 51.2%25 id in 531 aa. Similar to YPO3606 (78.0%25 identity in 803 aa overlap) and to YPO0764 (76.2%25 identity in 621 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AF044503;product=putative Rhs accessory genetic element;protein_id=CAL22201.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4026420	4026440	.	+	.	ID=id8626;Note=PS00154 E1-E2 ATPases phosphorylation site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00154
AL590842.1	EMBL	sequence_feature	4027857	4027922	.	+	.	ID=id8627;Note=Predicted helix-turn-helix motif with score 1023 (+2.67 SD) at aa 493-514%2C sequence IRLQFLWDRYGQSNDNSSCWIR;gbkey=misc_feature
AL590842.1	EMBL	gene	4028582	4029004	.	+	.	ID=gene3559;Name=YPO3614;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3614
AL590842.1	EMBL	CDS	4028582	4029004	.	+	0	ID=cds3511;Parent=gene3559;Dbxref=InterPro:IPR014894,InterPro:IPR016123,UniProtKB/TrEMBL:Q7CL36,NCBI_GP:CAL22202.1;Name=CAL22202.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA0094 TR:AAG03484 (EMBL:AE004448) (144 aa) fasta scores: E(): 7e-07%2C 26.5%25 id in 136 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004448;product=conserved hypothetical protein;protein_id=CAL22202.1;transl_table=11
AL590842.1	EMBL	gene	4029049	4033587	.	+	.	ID=gene3560;Name=YPO3615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3615
AL590842.1	EMBL	CDS	4029049	4033587	.	+	0	ID=cds3512;Parent=gene3560;Dbxref=GOA:Q0WB38,InterPro:IPR001826,InterPro:IPR006530,InterPro:IPR008727,InterPro:IPR022385,UniProtKB/TrEMBL:Q0WB38,NCBI_GP:CAL22203.1;Name=CAL22203.1;Note=Similar to Escherichia coli RhsC protein precursor SW:RHSC_ECOLI (P16918) (1397 aa) fasta scores: E(): 6.5e-20%2C 27.2%25 id in 1018 aa%2C and to Streptomyces coelicolor putative Rhs protein scd31.24 TR:Q9L0E3 (EMBL:AL161803) (927 aa) fasta scores: E(): 5.2e-31%2C 31.9%25 id in 889 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL161803;product=putative membrane protein;protein_id=CAL22203.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4029229	4029297	.	+	.	ID=id8628;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4029421	4029489	.	+	.	ID=id8629;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4029502	4029570	.	+	.	ID=id8630;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4033596	4034390	.	+	.	ID=gene3561;Name=YPO3616;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3616
AL590842.1	EMBL	CDS	4033596	4034390	.	+	0	ID=cds3513;Parent=gene3561;Dbxref=UniProtKB/TrEMBL:Q7CL37,NCBI_GP:CAL22204.1;Name=CAL22204.1;Note=Similar to Ureaplasma parvum hypothetical protein UU139 TR:Q9PR05 (EMBL:AE002114) (236 aa) fasta scores: E(): 1.1%2C 21.9%25 id in 192 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE002114;product=conserved hypothetical protein;protein_id=CAL22204.1;transl_table=11
AL590842.1	EMBL	gene	4034737	4035636	.	-	.	ID=gene3562;Name=YPO3617;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3617
AL590842.1	EMBL	CDS	4034737	4035636	.	-	0	ID=cds3514;Parent=gene3562;Dbxref=InterPro:IPR013022,UniProtKB/TrEMBL:Q7CL38,NCBI_GP:CAL22205.1;Name=CAL22205.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22205.1;transl_table=11
AL590842.1	EMBL	gene	4035633	4036763	.	-	.	ID=gene3563;Name=YPO3618;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3618
AL590842.1	EMBL	CDS	4035633	4036763	.	-	0	ID=cds3515;Parent=gene3563;Dbxref=GOA:Q7CL39,InterPro:IPR000683,InterPro:IPR016040,UniProtKB/TrEMBL:Q7CL39,NCBI_GP:CAL22206.1;Name=CAL22206.1;Note=Similar to Thermotoga maritima conserved hypothetical protein Tm0312 TR:Q9WYE8 (EMBL:AE001713) (328 aa) fasta scores: E(): 2.7e-11%2C 24.2%25 id in 240 aa%2C and to Bacillus subtilis hypothetical 37.8 kDa protein in csbX-nadA intergenic region YrbE SW:YRBE_BACSU (O05389) (341 aa) fasta scores: E(): 2.8e-11%2C 25.9%25 id in 332 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE001713;product=putative oxidoreductase;protein_id=CAL22206.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4035948	4036700	.	-	.	ID=id8631;Note=Pfam match to entry PF01408 GFO_IDH_MocA%2COxidoreductase family%2C score 65.00%2C E-value 1.6e-15;gbkey=misc_feature;inference=protein motif:PF01408
AL590842.1	EMBL	gene	4036958	4037899	.	+	.	ID=gene3564;Name=YPO3619;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3619
AL590842.1	EMBL	CDS	4036958	4037899	.	+	0	ID=cds3516;Parent=gene3564;Dbxref=GOA:Q7CL40,InterPro:IPR003313,InterPro:IPR009057,InterPro:IPR018060,UniProtKB/TrEMBL:Q7CL40,NCBI_GP:CAL22207.1;Name=CAL22207.1;Note=Similar to Pediococcus pentosaceus raffinose operon transcriptional regulatory protein RafR SW:RAFR_PEDPE (P43465) (277 aa) fasta scores: E(): 1.3e-12%2C 25.6%25 id in 270 aa;gbkey=CDS;product=putative araC-family transcriptional regulatory protein;protein_id=CAL22207.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4037609	4037869	.	+	.	ID=id8632;Note=Pfam match to entry PF00165 HTH_AraC%2C Bacterial regulatory helix-turn-helix proteins%2C araC family%2C score 86.20%2C E-value 6.7e-22;gbkey=misc_feature;inference=protein motif:PF00165
AL590842.1	EMBL	sequence_feature	4037612	4037677	.	+	.	ID=id8633;Note=Predicted helix-turn-helix motif with score 989 (+2.56 SD) at aa 219-240%2C sequence WDIDKFMQYCQVSKSQLFRLFQ;gbkey=misc_feature
AL590842.1	EMBL	gene	4038061	4038564	.	-	.	ID=gene3565;Name=YPO3620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3620
AL590842.1	EMBL	CDS	4038061	4038564	.	-	0	ID=cds3517;Parent=gene3565;Dbxref=GOA:Q7CL41,InterPro:IPR007721,InterPro:IPR023750,UniProtKB/TrEMBL:Q7CL41,NCBI_GP:CAL22208.1;Name=CAL22208.1;Note=Similar to Haemophilus influenzae high affinity ribose transport protein RbsD or Hi0501 SW:RBSD_HAEIN (P44734) (139 aa) fasta scores: E(): 1.3e-12%2C 34.0%25 id in 141 aa%2C and to Escherichia coli high affinity ribose transport protein RbsD SW:RBSD_ECOLI (P04982) (151 aa) fasta scores: E(): 9.9e-12%2C 32.4%25 id in 136 aa;gbkey=CDS;product=putative carbohydrate transport protein;protein_id=CAL22208.1;transl_table=11
AL590842.1	EMBL	gene	4038570	4039502	.	-	.	ID=gene3566;Name=YPO3621;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3621
AL590842.1	EMBL	CDS	4038570	4039502	.	-	0	ID=cds3518;Parent=gene3566;Dbxref=GOA:Q7CL42,InterPro:IPR002139,InterPro:IPR002173,InterPro:IPR011611,InterPro:IPR029056,UniProtKB/TrEMBL:Q7CL42,NCBI_GP:CAL22209.1;Name=CAL22209.1;Note=Similar to Escherichia coli ribokinase RbsK SW:RBSK_ECOLI (P05054) (309 aa) fasta scores: E(): 1.6e-32%2C35.9%25 id in 301 aa%2C and to Pseudomonas aeruginosa ribokinase Rbsk or Pa1950 TR:AAG05338 (EMBL:AE004621) (308 aa) fasta scores: E(): 0%2C 39.3%25 id in 298 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004621;product=probable carbohydrate kinase;protein_id=CAL22209.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4038726	4038767	.	-	.	ID=id8634;Note=PS00584 pfkB family of carbohydrate kinases signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00584
AL590842.1	EMBL	sequence_feature	4038732	4039391	.	-	.	ID=id8635;Note=Pfam match to entry PF00294 pfkB%2C pfkB family carbohydrate kinase%2C score 167.70%2C E-value 2e-46;gbkey=misc_feature;inference=protein motif:PF00294
AL590842.1	EMBL	sequence_feature	4039260	4039304	.	-	.	ID=id8636;Note=PS00059 Zinc-containing alcohol dehydrogenases signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00059
AL590842.1	EMBL	gene	4039656	4040357	.	-	.	ID=gene3567;Name=YPO3622;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3622
AL590842.1	EMBL	CDS	4039656	4040357	.	-	0	ID=cds3519;Parent=gene3567;Dbxref=GOA:Q7CL43,InterPro:IPR002915,InterPro:IPR011343,InterPro:IPR013785,UniProtKB/TrEMBL:Q7CL43,NCBI_GP:CAL22210.1;Name=CAL22210.1;Note=Similar to Bacillus subtilis deoxyribose-phosphate aldolase DeoC or Dra SW:DEOC_BACSU (P39121) (211 aa) fasta scores: E(): 1.9e-14%2C 32.2%25 id in 202 aa%2C and to Methanobacterium thermoautotrophicum probable deoxyribose-phosphate aldolase DeoC or Mth818 SW:DEOC_METTH (O26909) (224 aa) fasta scores: E(): 3.9e-18%2C 33.0%25 id in 227 aa;gbkey=CDS;product=putative deoxyribose-phosphate aldolase;protein_id=CAL22210.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4039686	4040336	.	-	.	ID=id8637;Note=Pfam match to entry PF01791 DeoC%2CDeoxyribose-phosphate aldolase%2C score 92.40%2C E-value 9.3e-24;gbkey=misc_feature;inference=protein motif:PF01791
AL590842.1	EMBL	gene	4040828	4041409	.	+	.	ID=gene3568;Name=ssuE;gbkey=Gene;gene=ssuE;gene_biotype=protein_coding;locus_tag=YPO3623
AL590842.1	EMBL	CDS	4040828	4041409	.	+	0	ID=cds3520;Parent=gene3568;Dbxref=GOA:Q7CL44,InterPro:IPR005025,InterPro:IPR020048,InterPro:IPR029039,UniProtKB/TrEMBL:Q7CL44,NCBI_GP:CAL22211.1;Name=CAL22211.1;Note=Similar to Escherichia coli NAD(P)H-dependent FMN reductase SsuE SW:SSUE_ECOLI (P80644) (191 aa) fasta scores: E(): 0%2C 61.1%25 id in 175 aa%2C and to Pseudomonas putida NADH-dependent FMN reductase SsuE SW:SSUE_PSEPU (O85762) (200 aa) fasta scores: E(): 0%2C 55.9%25 id in 195 aa;gbkey=CDS;gene=ssuE;product=putative NAD(P)H-dependent FMN reductase;protein_id=CAL22211.1;transl_table=11
AL590842.1	EMBL	gene	4041424	4042545	.	+	.	ID=gene3569;Name=ssuA;gbkey=Gene;gene=ssuA;gene_biotype=protein_coding;locus_tag=YPO3624
AL590842.1	EMBL	CDS	4041424	4042545	.	+	0	ID=cds3521;Parent=gene3569;Dbxref=GOA:Q0WB29,InterPro:IPR001638,InterPro:IPR010067,InterPro:IPR015168,UniProtKB/TrEMBL:Q0WB29,NCBI_GP:CAL22212.1;Name=CAL22212.1;Note=Similar to Escherichia coli putative aliphatic sulfonates binding protein precursor SsuA SW:SSUA_ECOLI (P75853) (319 aa) fasta scores: E(): 0%2C 73.1%25 id in 316 aa;gbkey=CDS;gene=ssuA;product=putative aliphatic sulfonates binding protein;protein_id=CAL22212.1;transl_table=11
AL590842.1	EMBL	gene	4042564	4043712	.	+	.	ID=gene3570;Name=ssuD;gbkey=Gene;gene=ssuD;gene_biotype=protein_coding;locus_tag=YPO3625
AL590842.1	EMBL	CDS	4042564	4043712	.	+	0	ID=cds3522;Parent=gene3570;Dbxref=GOA:Q8ZB04,InterPro:IPR011251,InterPro:IPR019911,NCBI_GP:CAL22213.1;Name=CAL22213.1;Note=Similar to Escherichia coli alkanesulfonate monooxygenase SsuD SW:SSUD_ECOLI (P80645) (380 aa) fasta scores: E(): 0%2C 78.7%25 id in 381 aa%2C and to Buttiauxella spPNBS. sulfonate monooxygenase SsuD TR:Q9KHR3 (EMBL:AF250869) (382 aa) fasta scores: E(): 0%2C 81.9%25 id in 382 aa;gbkey=CDS;gene=ssuD;inference=similar to sequence:INSDC:AF250869;product=alkanesulfonate monooxygenase;protein_id=CAL22213.1;transl_table=11
AL590842.1	EMBL	gene	4043721	4044518	.	+	.	ID=gene3571;Name=ssuC;gbkey=Gene;gene=ssuC;gene_biotype=protein_coding;locus_tag=YPO3626
AL590842.1	EMBL	CDS	4043721	4044518	.	+	0	ID=cds3523;Parent=gene3571;Dbxref=GOA:Q7CL45,InterPro:IPR000515,UniProtKB/TrEMBL:Q7CL45,NCBI_GP:CAL22214.1;Name=CAL22214.1;Note=Similar to Escherichia coli putative aliphatic sulfonates transport permease protein SsuC SW:SSUC_ECOLI (P75851) (263 aa) fasta scores: E(): 0%2C 79.9%25 id in 259 aa%2Cand to Pseudomonas aeruginosa probable permease of ABC transporter Pa3443 TR:AAG06831 (EMBL:AE004765) (262 aa) fasta scores: E(): 0%2C 81.0%25 id in 263 aa;gbkey=CDS;gene=ssuC;inference=similar to sequence:INSDC:AE004765;product=putative aliphatic sulfonates transport permease protein;protein_id=CAL22214.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4043757	4043825	.	+	.	ID=id8638;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ssuC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4043934	4044002	.	+	.	ID=id8639;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ssuC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4044039	4044092	.	+	.	ID=id8640;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ssuC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4044105	4044173	.	+	.	ID=id8641;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ssuC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4044159	4044392	.	+	.	ID=id8642;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 41.40%2C E-value 2.1e-08;gbkey=misc_feature;gene=ssuC;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	4044210	4044278	.	+	.	ID=id8643;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ssuC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4044288	4044356	.	+	.	ID=id8644;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ssuC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4044390	4044458	.	+	.	ID=id8645;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ssuC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4044515	4045330	.	+	.	ID=gene3572;Name=ssuB;gbkey=Gene;gene=ssuB;gene_biotype=protein_coding;locus_tag=YPO3627
AL590842.1	EMBL	CDS	4044515	4045330	.	+	0	ID=cds3524;Parent=gene3572;Dbxref=GOA:Q74PI5,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR017875,InterPro:IPR027417,NCBI_GP:CAL22215.1;Name=CAL22215.1;Note=Similar to Escherichia coli putative aliphatic sulfonates transport ATP-binding protein SsuB SW:SSUB_ECOLI (P38053) (255 aa) fasta scores: E(): 0%2C 72.3%25 id in 235 aa%2Cand to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter pa3442 TR:AAG06830 (EMBL:AE004765) (274 aa) fasta scores: E(): 0%2C 73.0%25 id in 241 aa;gbkey=CDS;gene=ssuB;inference=similar to sequence:INSDC:AE004765;product=putative aliphatic sulfonates transport ATP-binding protein;protein_id=CAL22215.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4044626	4045144	.	+	.	ID=id8646;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 201.00%2C E-value 1.8e-56;gbkey=misc_feature;gene=ssuB;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	4044647	4044670	.	+	.	ID=id8647;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ssuB;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	4044914	4044958	.	+	.	ID=id8648;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=ssuB;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	4045949	4046152	.	-	.	ID=gene3573;Name=YPO3628;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3628
AL590842.1	EMBL	CDS	4045949	4046152	.	-	0	ID=cds3525;Parent=gene3573;Dbxref=InterPro:IPR007337,UniProtKB/TrEMBL:Q7CL46,NCBI_GP:CAL22216.1;Name=CAL22216.1;Note=Similar to Escherichia coli DNA-damage-inducible protein J DinJ SW:DINJ_ECOLI (Q47150) (86 aa) fasta scores: E(): 1.2e-05%2C 36.7%25 id in 60 aa%2C and to the previously sequenced Yersinia pestis Orf11 TR:Q9RPP0 (EMBL:AF152923) (86 aa) fasta scores: E(): 0.003%2C 31.7%25 id in 60 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF152923;product=putative DNA-damage-inducible protein;protein_id=CAL22216.1;transl_table=11
AL590842.1	EMBL	gene	4046606	4047961	.	+	.	ID=gene3574;Name=yjcD;gbkey=Gene;gene=yjcD;gene_biotype=protein_coding;locus_tag=YPO3629
AL590842.1	EMBL	CDS	4046606	4047961	.	+	0	ID=cds3526;Parent=gene3574;Dbxref=GOA:Q7CL47,InterPro:IPR006043,UniProtKB/TrEMBL:Q7CL47,NCBI_GP:CAL22217.1;Name=CAL22217.1;Note=Similar to Escherichia coli hypothetical 45.7 kDa protein in soxR-acs intergenic region YjcD SW:YJCD_ECOLI (P32702) (449 aa) fasta scores: E(): 0%2C 85.0%25 id in 448 aa%2Cand to Shewanella massilia hypothetical membrane protein TR:O87945 (EMBL:AJ006085) (450 aa) fasta scores: E(): 0%2C76.0%25 id in 445 aa;gbkey=CDS;gene=yjcD;inference=similar to sequence:INSDC:AJ006085;product=putative xanthine/uracil permease;protein_id=CAL22217.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4046687	4047841	.	+	.	ID=id8649;Note=Pfam match to entry PF00860 xan_ur_permease%2CXanthine/uracil permeases family%2C score 331.00%2C E-value 1.3e-95;gbkey=misc_feature;gene=yjcD;inference=protein motif:PF00860
AL590842.1	EMBL	sequence_feature	4046696	4046764	.	+	.	ID=id8650;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjcD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4046777	4046845	.	+	.	ID=id8651;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjcD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4046864	4046932	.	+	.	ID=id8652;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjcD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4046945	4047013	.	+	.	ID=id8653;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjcD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4047032	4047100	.	+	.	ID=id8654;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjcD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4047128	4047196	.	+	.	ID=id8655;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjcD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4047215	4047283	.	+	.	ID=id8656;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjcD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4047341	4047409	.	+	.	ID=id8657;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjcD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4047530	4047598	.	+	.	ID=id8658;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjcD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4047587	4047610	.	+	.	ID=id8659;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=yjcD;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	4047611	4047664	.	+	.	ID=id8660;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjcD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4047668	4047736	.	+	.	ID=id8661;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjcD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4047794	4047862	.	+	.	ID=id8662;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjcD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4047899	4047952	.	+	.	ID=id8663;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjcD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4048310	4049959	.	+	.	ID=gene3575;Name=yjcE;gbkey=Gene;gene=yjcE;gene_biotype=protein_coding;locus_tag=YPO3630
AL590842.1	EMBL	CDS	4048310	4049959	.	+	0	ID=cds3527;Parent=gene3575;Dbxref=GOA:Q0WB23,InterPro:IPR004705,InterPro:IPR006153,InterPro:IPR018422,UniProtKB/TrEMBL:Q0WB23,NCBI_GP:CAL22218.1;Name=CAL22218.1;Note=Similar to Escherichia coli putative Na(+)/H(+) exchanger YjcE SW:YJCE_ECOLI (P32703) (549 aa) fasta scores: E(): 0%2C 75.1%25 id in 547 aa;gbkey=CDS;gene=yjcE;inference=protein motif:TMHMM:2.0;product=putative putative Na(+)/H(+) exchanger protein;protein_id=CAL22218.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4048316	4049590	.	+	.	ID=id8664;Note=Pfam match to entry PF00999 Na_H_Exchanger%2CSodium/hydrogen exchanger family%2C score 408.20%2C E-value 8e-119;gbkey=misc_feature;gene=yjcE;inference=protein motif:PF00999
AL590842.1	EMBL	sequence_feature	4048319	4048387	.	+	.	ID=id8665;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjcE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4048565	4048633	.	+	.	ID=id8666;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjcE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4048646	4048714	.	+	.	ID=id8667;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjcE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4048790	4048858	.	+	.	ID=id8668;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjcE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4048871	4048930	.	+	.	ID=id8669;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjcE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4048964	4049017	.	+	.	ID=id8670;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjcE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4049030	4049098	.	+	.	ID=id8671;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjcE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4049135	4049203	.	+	.	ID=id8672;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjcE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4049246	4049314	.	+	.	ID=id8673;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjcE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4049390	4049458	.	+	.	ID=id8674;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjcE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4049501	4049569	.	+	.	ID=id8675;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjcE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4050177	4051364	.	-	.	ID=gene3576;Name=YPO3631;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3631
AL590842.1	EMBL	CDS	4050177	4051364	.	-	0	ID=cds3528;Parent=gene3576;Dbxref=UniProtKB/TrEMBL:Q0WB22,NCBI_GP:CAL22219.1;Name=CAL22219.1;Note=no significant database matches;gbkey=CDS;product=putative exported protein;protein_id=CAL22219.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4051287	4051364	.	-	.	ID=id8676;Note=PS00430 TonB-dependent receptor proteins signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS00430
AL590842.1	EMBL	gene	4051516	4052436	.	-	.	ID=gene3577;Name=ddg;gbkey=Gene;gene=ddg;gene_biotype=protein_coding;locus_tag=YPO3632
AL590842.1	EMBL	CDS	4051516	4052436	.	-	0	ID=cds3529;Parent=gene3577;Dbxref=GOA:Q0WB21,InterPro:IPR004960,InterPro:IPR011920,UniProtKB/TrEMBL:Q0WB21,NCBI_GP:CAL22220.1;Name=CAL22220.1;Note=Similar to Escherichia coli Ddg protein SW:DDG_ECOLI (P76522) (306 aa) fasta scores: E(): 0%2C 67.8%25 id in 304 aa%2Cand to Escherichia coli lipid a biosynthesis lauroyl acyltransferase HtrB SW:HTRB_ECOLI (P24187) (306 aa) fasta scores: E(): 0%2C 58.5%25 id in 306 aa;gbkey=CDS;gene=ddg;product=putative membrane protein;protein_id=CAL22220.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4052323	4052388	.	-	.	ID=id8677;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=ddg;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4053161	4054219	.	+	.	ID=gene3578;Name=YPO3633;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3633
AL590842.1	EMBL	CDS	4053161	4054219	.	+	0	ID=cds3530;Parent=gene3578;Dbxref=InterPro:IPR025997,InterPro:IPR028082,UniProtKB/TrEMBL:Q7CL48,NCBI_GP:CAL22221.1;Name=CAL22221.1;Note=Similar to Escherichia coli from bases 1598243 to 1608845 TR:P76142 (EMBL:AE000249) (340 aa) fasta scores: E(): 1e-15%2C 29.2%25 id in 312 aa%2C and to Streptomyces coelicolor putative secreted solute-binding lipoprotein scf43.19C TR:Q9RD69 (EMBL:AL136502) (360 aa) fasta scores: E(): 2.3e-16%2C 28.3%25 id in 315 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL136502;product=putative periplasmic binding protein;protein_id=CAL22221.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4053236	4053304	.	+	.	ID=id8678;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4054423	4055919	.	+	.	ID=gene3579;Name=YPO3634;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3634
AL590842.1	EMBL	CDS	4054423	4055919	.	+	0	ID=cds3531;Parent=gene3579;Dbxref=GOA:Q7CL49,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CL49,NCBI_GP:CAL22222.1;Name=CAL22222.1;Note=Similar to Streptomyces coelicolor ABC transporter ATP binding protein Sc3f9.02 TR:O69942 (EMBL:AL023862) (505 aa) fasta scores: E(): 0%2C 36.9%25 id in 502 aa%2C and to Bacillus halodurans ribose ABC transporter RbsA TR:Q9K6J9 (EMBL:AP001519) (499 aa) fasta scores: E(): 0%2C 38.3%25 id in 496 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001519;product=ABC transporter ATP binding protein;protein_id=CAL22222.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4054519	4055085	.	+	.	ID=id8679;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 172.60%2C E-value 6.4e-48;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	4054540	4054563	.	+	.	ID=id8680;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	4055269	4055850	.	+	.	ID=id8681;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 105.20%2C E-value 1.2e-27;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	4055623	4055667	.	+	.	ID=id8682;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	gene	4055912	4056901	.	+	.	ID=gene3580;Name=YPO3635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3635
AL590842.1	EMBL	CDS	4055912	4056901	.	+	0	ID=cds3532;Parent=gene3580;Dbxref=GOA:Q7CL50,InterPro:IPR001851,UniProtKB/TrEMBL:Q7CL50,NCBI_GP:CAL22223.1;Name=CAL22223.1;Note=Similar to Escherichia coli ribose transport system permease protein RbsC SW:RBSC_ECOLI (P04984) (321 aa) fasta scores: E(): 7.8e-29%2C 35.4%25 id in 297 aa%2C and to Bacillus subtilis ribose transport system permease protein RbsC SW:RBSC_BACSU (P36948) (323 aa) fasta scores: E(): 7.7e-31%2C34.3%25 id in 300 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative branched-chain amino acid transport system%2C permease component;protein_id=CAL22223.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4055948	4056001	.	+	.	ID=id8683;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4056044	4056112	.	+	.	ID=id8684;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4056116	4056184	.	+	.	ID=id8685;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4056194	4056262	.	+	.	ID=id8686;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4056281	4056349	.	+	.	ID=id8687;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4056419	4056487	.	+	.	ID=id8688;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4056566	4056634	.	+	.	ID=id8689;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4056644	4056712	.	+	.	ID=id8690;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4056731	4056799	.	+	.	ID=id8691;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4056809	4056868	.	+	.	ID=id8692;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4056903	4057856	.	+	.	ID=gene3581;Name=YPO3636;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3636
AL590842.1	EMBL	CDS	4056903	4057856	.	+	0	ID=cds3533;Parent=gene3581;Dbxref=GOA:Q7CL51,InterPro:IPR001851,UniProtKB/TrEMBL:Q7CL51,NCBI_GP:CAL22224.1;Name=CAL22224.1;Note=Similar to Bacillus subtilis ribose transport system permease protein RbsC SW:RBSC_BACSU (P36948) (323 aa) fasta scores: E(): 2.6e-30%2C 37.2%25 id in 304 aa%2C and to Bacillus halodurans ribose ABC transporter RbsC TR:Q9K6J8 (EMBL:AP001519) (314 aa) fasta scores: E(): 5.8e-30%2C 36.5%25 id in 299 aa;gbkey=CDS;inference=similar to sequence:INSDC:AP001519;product=putative ABC transporter%2C permease protein;protein_id=CAL22224.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4056939	4056998	.	+	.	ID=id8693;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4057056	4057124	.	+	.	ID=id8694;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4057185	4057253	.	+	.	ID=id8695;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4057266	4057334	.	+	.	ID=id8696;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4057395	4057463	.	+	.	ID=id8697;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4057551	4057610	.	+	.	ID=id8698;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4057647	4057742	.	+	.	ID=id8699;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4057770	4057838	.	+	.	ID=id8700;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4057875	4059512	.	+	.	ID=gene3582;Name=YPO3637;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3637
AL590842.1	EMBL	CDS	4057875	4059512	.	+	0	ID=cds3534;Parent=gene3582;Dbxref=GOA:Q0WB16,InterPro:IPR006003,InterPro:IPR018484,InterPro:IPR018485,UniProtKB/TrEMBL:Q0WB16,NCBI_GP:CAL22225.1;Name=CAL22225.1;Note=Similar to Escherichia coli ribitol kinase RtlK TR:AAG01884 (EMBL:AY005817) (534 aa) fasta scores: E(): 0%2C45.9%25 id in 529 aa%2C and to Klebsiella pneumoniae ribitol kinase RbtK TR:O52716 (EMBL:AF045244) (535 aa) fasta scores: E(): 0%2C 45.1%25 id in 526 aa;gbkey=CDS;inference=similar to sequence:INSDC:AY005817;product=putative carbohydrate kinase;protein_id=CAL22225.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4058916	4058963	.	+	.	ID=id8701;Note=PS00038 Myc-type%2C 'helix-loop-helix' dimerization domain signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00038
AL590842.1	EMBL	sequence_feature	4058997	4059320	.	+	.	ID=id8702;Note=Pfam match to entry PF00370 FGGY%2C FGGY family of carbohydrate kinases%2C score 36.00%2C E-value 3.2e-08;gbkey=misc_feature;inference=protein motif:PF00370
AL590842.1	EMBL	sequence_feature	4059375	4059398	.	+	.	ID=id8703;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4059509	4060114	.	+	.	ID=gene3583;Name=YPO3638;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3638
AL590842.1	EMBL	CDS	4059509	4060114	.	+	0	ID=cds3535;Parent=gene3583;Dbxref=GOA:Q7CL52,InterPro:IPR001347,UniProtKB/TrEMBL:Q7CL52,NCBI_GP:CAL22226.1;Name=CAL22226.1;Note=Similar to Aquifex aeolicus hypothetical protein Aq_1546 SW:YF46_AQUAE (O67500) (322 aa) fasta scores: E(): 1.1e-21%2C 38.3%25 id in 180 aa%2C and to Haemophilus influenzae hypothetical protein Hi1678 SW:YRBH_HAEIN (P45313) (337 aa) fasta scores: E(): 3e-21%2C 35.1%25 id in 185 aa;gbkey=CDS;product=putative phosphosugar isomerase/binding protein;protein_id=CAL22226.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4059620	4060024	.	+	.	ID=id8704;Note=Pfam match to entry PF01380 SIS%2C SIS domain%2C score 66.00%2C E-value 8.1e-16;gbkey=misc_feature;inference=protein motif:PF01380
AL590842.1	EMBL	gene	4060304	4061158	.	-	.	ID=gene3584;Name=yghU;gbkey=Gene;gene=yghU;gene_biotype=protein_coding;locus_tag=YPO3639
AL590842.1	EMBL	CDS	4060304	4061158	.	-	0	ID=cds3536;Parent=gene3584;Dbxref=GOA:Q7CL53,InterPro:IPR004045,InterPro:IPR010987,InterPro:IPR012336,UniProtKB/TrEMBL:Q7CL53,NCBI_GP:CAL22227.1;Name=CAL22227.1;Note=Similar to Escherichia coli hypothetical 32.4 kDa protein in gsp-hybG intergenic region YghU SW:YGHU_ECOLI (Q46845) (288 aa) fasta scores: E(): 0%2C 70.3%25 id in 279 aa%2Cand to Pseudomonas aeruginosa probable glutathione S-transferase Pa1033 TR:AAG04422 (EMBL:AE004536) (213 aa) fasta scores: E(): 0%2C 42.7%25 id in 225 aa;gbkey=CDS;gene=yghU;inference=similar to sequence:INSDC:AE004536;product=putative glutathione S-transferase;protein_id=CAL22227.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4060406	4061023	.	-	.	ID=id8705;Note=Pfam match to entry PF00043 GST%2C Glutathione S-transferases.%2C score 82.00%2C E-value 6.6e-24;gbkey=misc_feature;gene=yghU;inference=protein motif:PF00043
AL590842.1	EMBL	gene	4061409	4062755	.	+	.	ID=gene3585;Name=YPO3640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3640
AL590842.1	EMBL	CDS	4061409	4062755	.	+	0	ID=cds3537;Parent=gene3585;Dbxref=InterPro:IPR027372,UniProtKB/TrEMBL:Q7CL54,NCBI_GP:CAL22228.1;Name=CAL22228.1;Note=Similar to Campylobacter jejuni putative periplasmic protein Cj0728 TR:Q9PPH9 (EMBL:AL139076) (441 aa) fasta scores: E(): 0%2C 50.7%25 id in 440 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL139076;product=putative exported protein;protein_id=CAL22228.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4061487	4061519	.	+	.	ID=id8706;Note=PS00435 Peroxidases proximal heme-ligand signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00435
AL590842.1	EMBL	gene	4062862	4064037	.	-	.	ID=gene3586;Name=YPO3641;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3641
AL590842.1	EMBL	CDS	4062862	4064037	.	-	0	ID=cds3538;Parent=gene3586;Dbxref=InterPro:IPR001623,UniProtKB/TrEMBL:Q7CL55,NCBI_GP:CAL22229.1;Name=CAL22229.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22229.1;transl_table=11
AL590842.1	EMBL	repeat_region	4064297	4065008	.	+	.	ID=id8707;Note=Contains a 'A' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	4064442	4064900	.	+	.	ID=gene3587;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO3642
AL590842.1	EMBL	CDS	4064442	4064900	.	+	0	ID=cds3539;Parent=gene3587;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL22230.1;Name=CAL22230.1;Note=Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL22230.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4064496	4064807	.	+	.	ID=id8708;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	4065083	4065295	.	-	.	ID=gene3588;Name=cspa2;gbkey=Gene;gene=cspa2;gene_biotype=protein_coding;locus_tag=YPO3643
AL590842.1	EMBL	CDS	4065083	4065295	.	-	0	ID=cds3540;Parent=gene3588;Dbxref=GOA:O34279,InterPro:IPR002059,InterPro:IPR011129,InterPro:IPR012156,InterPro:IPR012340,InterPro:IPR019844,UniProtKB/TrEMBL:O34279,NCBI_GP:CAL22231.1;Name=CAL22231.1;Note=Similar to Yersinia enterocolitica major cold shock protein Cspa1 TR:Q9RIF2 (EMBL:U82821) (70 aa) fasta scores: E(): 2e-29%2C 95.7%25 id in 70 aa%2C and to Y. enterocolitica major cold shock protein Cspa2 TR:Q9RIF1 (EMBL:U82821) (70 aa) fasta scores: E(): 2.6e-28%2C 94.3%25 id in 70 aa%2C and identical to the previously sequenced Yersinia pestis hypothetical 7.5 kDa protein TR:O34279 (EMBL:Z97978) (70 aa) fasta scores: E(): 2.2e-30%2C 100.0%25 id in 70 aa. This CDS is almost identical (97.4%25) to the one immediately upstream (YPO3644). It is also similar to YPO2659 (88.0%25 identity in 75 aa overlap)%2C YPO1655 (78.6%25 identity in 70 aa overlap)%2C YPO2595 ( 72.2%25 identity in 72 aa overlap)%2CYPO1746 (76.1%25 identity in 67 aa overlap) and YPO1398 (50.0%25 identity in 70 aa overlap);gbkey=CDS;gene=cspa2;inference=similar to sequence:INSDC:Z97978;product=major cold shock protein Cspa2;protein_id=CAL22231.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4065086	4065286	.	-	.	ID=id8709;Note=Pfam match to entry PF00313 CSD%2C 'Cold-shock' DNA-binding domain%2C score 150.00%2C E-value 4e-41;gbkey=misc_feature;gene=cspa2;inference=protein motif:PF00313
AL590842.1	EMBL	sequence_feature	4065185	4065244	.	-	.	ID=id8710;Note=PS00352 'Cold-shock' DNA-binding domain signature.;gbkey=misc_feature;gene=cspa2;inference=protein motif:ProSite:PS00352
AL590842.1	EMBL	gene	4065555	4065767	.	-	.	ID=gene3589;Name=cspa1;gbkey=Gene;gene=cspa1;gene_biotype=protein_coding;locus_tag=YPO3644
AL590842.1	EMBL	CDS	4065555	4065767	.	-	0	ID=cds3541;Parent=gene3589;Dbxref=GOA:Q74PK2,InterPro:IPR002059,InterPro:IPR011129,InterPro:IPR012156,InterPro:IPR012340,InterPro:IPR019844,UniProtKB/TrEMBL:Q74PK2,NCBI_GP:CAL22232.1;Name=CAL22232.1;Note=Similar to Yersinia enterocolitica major cold shock protein Cspa1 TR:Q9RIF2 (EMBL:U82821) (70 aa) fasta scores: E(): 2.1e-29%2C 97.1%25 id in 70 aa%2C and to Y. enterocolitica major cold shock protein Cspa2 TR:Q9RIF1 (EMBL:U82821) (70 aa) fasta scores: E(): 2.7e-28%2C 95.7%25 id in 70 aa%2C and to the previously sequenced Yersinia pestis hypothetical 7.5 kDa protein TR:O34279 (EMBL:Z97978) (70 aa) fasta scores: E(): 1e-29%2C 98.6%25 id in 70 aa. This CDS is almost identical (97.4%25) to the one immediately downstream (YPO36433). It is also similar to YPO2659 (90.7%25 identity in 75 aa overlap)%2CYPO1655 (80.0%25 identity in 70 aa overlap)%2C YPO2595 ( 73.6%25 identity in 72 aa overlap)%2C YPO1746 (77.6%25 identity in 67 aa overlap) and YPO1398 (51.4%25 identity in 70 aa overlap);gbkey=CDS;gene=cspa1;inference=similar to sequence:INSDC:Z97978;product=major cold shock protein Cspa1;protein_id=CAL22232.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4065558	4065758	.	-	.	ID=id8711;Note=Pfam match to entry PF00313 CSD%2C 'Cold-shock' DNA-binding domain%2C score 150.90%2C E-value 2.2e-41;gbkey=misc_feature;gene=cspa1;inference=protein motif:PF00313
AL590842.1	EMBL	sequence_feature	4065657	4065716	.	-	.	ID=id8712;Note=PS00352 'Cold-shock' DNA-binding domain signature.;gbkey=misc_feature;gene=cspa1;inference=protein motif:ProSite:PS00352
AL590842.1	EMBL	gene	4065860	4066024	.	-	.	ID=gene3590;Name=YPO3645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3645
AL590842.1	EMBL	CDS	4065860	4066024	.	-	0	ID=cds3542;Parent=gene3590;Dbxref=UniProtKB/TrEMBL:Q74PK3,NCBI_GP:CAL22233.1;Name=CAL22233.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22233.1;transl_table=11
AL590842.1	EMBL	gene	4066300	4066767	.	-	.	ID=gene3591;Name=pcp;gbkey=Gene;gene=pcp;gene_biotype=protein_coding;gene_synonym=pcpY,slyB;locus_tag=YPO3646
AL590842.1	EMBL	CDS	4066300	4066767	.	-	0	ID=cds3543;Parent=gene3591;Dbxref=GOA:Q0WB07,InterPro:IPR008816,UniProtKB/TrEMBL:Q0WB07,NCBI_GP:CAL22234.1;Name=CAL22234.1;Note=Similar to Yersinia enterocolitica outer membrane lipoprotein Pcp precursor Pcp or PcpY SW:PCP_YEREN (P31484) (155 aa) fasta scores: E(): 0%2C 73.7%25 id in 156 aa%2C and to Salmonella typhimurium outer membrane lipoprotein SlyB precursor slyB SW:SLYB_SALTY (Q53549) (155 aa) fasta scores: E(): 4.2e-31%2C 69.2%25 id in 156 aa. Similar to YPO2373 (69.9%25 identity in 156 aa overlap) and YPO0752 (pseudogene);gbkey=CDS;gene=pcp;product=outer membrane lipoprotein;protein_id=CAL22234.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4066714	4066746	.	-	.	ID=id8713;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=pcp;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	4067228	4068055	.	+	.	ID=gene3592;Name=YPO3647;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3647
AL590842.1	EMBL	CDS	4067228	4068055	.	+	0	ID=cds3544;Parent=gene3592;Dbxref=GOA:Q7CL57,InterPro:IPR001279,UniProtKB/TrEMBL:Q7CL57,NCBI_GP:CAL22235.1;Name=CAL22235.1;Note=Similar to Archaeoglobus fulgidus hypothetical protein AF1509 TR:O28763 (EMBL:AE000998) (262 aa) fasta scores: E(): 2.5e-11%2C 28.7%25 id in 272 aa%2C and to Deinococcus radiodurans conserved hypothetical protein DR1823 TR:Q9RTE2 (EMBL:AE002022) (253 aa) fasta scores: E(): 3.6e-07%2C 29.5%25 id in 207 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE002022;product=conserved hypothetical protein;protein_id=CAL22235.1;transl_table=11
AL590842.1	EMBL	gene	4068120	4069010	.	+	.	ID=gene3593;Name=YPO3648;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3648
AL590842.1	EMBL	CDS	4068120	4069010	.	+	0	ID=cds3545;Parent=gene3593;Dbxref=GOA:Q7CL58,InterPro:IPR002204,InterPro:IPR006115,InterPro:IPR008927,InterPro:IPR013328,InterPro:IPR015815,InterPro:IPR016040,InterPro:IPR029154,UniProtKB/TrEMBL:Q7CL58,NCBI_GP:CAL22236.1;Name=CAL22236.1;Note=Similar to Escherichia coli 2-hydroxy-3-oxopropionate reductase GarR or B3125 SW:GARR_ECOLI (P23523) (294 aa) fasta scores: E(): 1e-24%2C31.4%25 id in 283 aa%2C and to Bacillus subtilis hypothetical 30.7 kDa protein in mcpC-kinA intergenic region YkwC SW:YKWC_BACSU (O34948) (288 aa) fasta scores: E(): 1.1e-23%2C32.1%25 id in 290 aa;gbkey=CDS;product=putative 2-hydroxy-3-oxopropionate reductase;protein_id=CAL22236.1;transl_table=11
AL590842.1	EMBL	gene	4069188	4069583	.	+	.	ID=gene3594;Name=YPO3649;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3649
AL590842.1	EMBL	CDS	4069188	4069583	.	+	0	ID=cds3546;Parent=gene3594;Dbxref=GOA:Q0WB04,InterPro:IPR003779,InterPro:IPR029032,UniProtKB/TrEMBL:Q0WB04,NCBI_GP:CAL22237.1;Name=CAL22237.1;Note=Similar to Agrobacterium radiobacter gamma carboxymuconolactone decarboxylase PcaC TR:Q9KX42 (EMBL:U32867) (144 aa) fasta scores: E(): 6.3e-17%2C 41.0%25 id in 117 aa%2C and to Pseudomonas aeruginosa gamma-carboxymuconolactone decarboxylase Pcac or Pa0232 TR:AAG03621 (EMBL:AE004461) (133 aa) fasta scores: E(): 3.9e-19%2C 43.6%25 id in 117 aa;gbkey=CDS;inference=similar to sequence:INSDC:U32867;product=putative gamma carboxymuconolactone decarboxylase;protein_id=CAL22237.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4069473	4069541	.	+	.	ID=id8714;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4069737	4071101	.	+	.	ID=gene3595;Name=YPO3650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3650
AL590842.1	EMBL	CDS	4069737	4071101	.	+	0	ID=cds3547;Parent=gene3595;Dbxref=GOA:Q7CL59,InterPro:IPR005829,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q7CL59,NCBI_GP:CAL22238.1;Name=CAL22238.1;Note=Similar to Escherichia coli proline/betaine transporter ProP SW:PROP_ECOLI (P30848) (500 aa) fasta scores: E(): 5.9e-26%2C 27.4%25 id in 449 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative metabolite transport protein;protein_id=CAL22238.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4069809	4071098	.	+	.	ID=id8715;Note=Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporter%2C score 35.10%2C E-value 4.7e-08;gbkey=misc_feature;inference=protein motif:PF00083
AL590842.1	EMBL	sequence_feature	4069824	4069892	.	+	.	ID=id8716;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4069935	4070003	.	+	.	ID=id8717;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4070028	4070087	.	+	.	ID=id8718;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4070130	4070198	.	+	.	ID=id8719;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4070145	4070222	.	+	.	ID=id8720;Note=PS00217 Sugar transport proteins signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00217
AL590842.1	EMBL	sequence_feature	4070232	4070300	.	+	.	ID=id8721;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4070343	4070411	.	+	.	ID=id8722;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4070514	4070582	.	+	.	ID=id8723;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4070610	4070678	.	+	.	ID=id8724;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4070715	4070774	.	+	.	ID=id8725;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4070802	4070870	.	+	.	ID=id8726;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4070907	4070975	.	+	.	ID=id8727;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4070985	4071053	.	+	.	ID=id8728;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4071191	4071853	.	+	.	ID=gene3596;Name=YPO3651;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3651
AL590842.1	EMBL	CDS	4071191	4071853	.	+	0	ID=cds3548;Parent=gene3596;Dbxref=GOA:Q0WB02,InterPro:IPR000524,InterPro:IPR008920,InterPro:IPR011711,InterPro:IPR011991,UniProtKB/TrEMBL:Q0WB02,NCBI_GP:CAL22239.1;Name=CAL22239.1;Note=Similar to Streptomyces coelicolor putative GntR-family transcriptional regulator SC9A4.30 TR:CAC01657 (EMBL:AL391072) (224 aa) fasta scores: E(): 8.8e-11%2C 31.8%25 id in 176 aa%2C and to Pseudomonas aeruginosa probable transcriptional regulator PA0797 TR:AAG04186 (EMBL:AE004515) (240 aa) fasta scores: E(): 1.1e-10%2C 29.6%25 id in 216 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL391072;product=putative GntR-family transcriptional regulatory protein;protein_id=CAL22239.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4071239	4071415	.	+	.	ID=id8729;Note=Pfam match to entry PF00392 gntR%2C Bacterial regulatory proteins%2C gntR family%2C score 67.10%2C E-value 3.3e-19;gbkey=misc_feature;inference=protein motif:PF00392
AL590842.1	EMBL	sequence_feature	4071293	4071367	.	+	.	ID=id8730;Note=PS00043 Bacterial regulatory proteins%2C gntR family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00043
AL590842.1	EMBL	sequence_feature	4071296	4071361	.	+	.	ID=id8731;Note=Predicted helix-turn-helix motif with score 1111 (+2.97 SD) at aa 36-57%2C sequence LIERELCETLGVSRTSIREALR;gbkey=misc_feature
AL590842.1	EMBL	gene	4071919	4072395	.	+	.	ID=gene3597;Name=YPO3652;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3652
AL590842.1	EMBL	CDS	4071919	4072395	.	+	0	ID=cds3549;Parent=gene3597;Dbxref=InterPro:IPR018958,UniProtKB/TrEMBL:Q7CL60,NCBI_GP:CAL22240.1;Name=CAL22240.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22240.1;transl_table=11
AL590842.1	EMBL	gene	4072626	4072745	.	+	.	ID=gene3598;Name=YPO3653;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3653
AL590842.1	EMBL	CDS	4072626	4072745	.	+	0	ID=cds3550;Parent=gene3598;Dbxref=GOA:Q74PL1,InterPro:IPR015287,UniProtKB/TrEMBL:Q74PL1,NCBI_GP:CAL22241.1;Name=CAL22241.1;Note=Similar to the C-terminal region of Escherichia coli colicin D immunity protein Cdi SW:IMMD_ECOLI (P11899) (87 aa) fasta scores: E(): 0.86%2C 38.7%25 id in 31 aa;gbkey=CDS;product=putative colicin immunity protein;protein_id=CAL22241.1;transl_table=11
AL590842.1	EMBL	gene	4073149	4073445	.	-	.	ID=gene3599;Name=fiS;gbkey=Gene;gene=fiS;gene_biotype=protein_coding;locus_tag=YPO3654
AL590842.1	EMBL	CDS	4073149	4073445	.	-	0	ID=cds3551;Parent=gene3599;Dbxref=GOA:Q8ZAX8,InterPro:IPR002197,InterPro:IPR005412,InterPro:IPR009057,NCBI_GP:CAL22242.1;Name=CAL22242.1;Note=Similar to Escherichia coli and Salmonella typhimurium DNA-binding protein Fis SW:FIS_ECOLI (P11028) (98 aa) fasta scores: E(): 0%2C 98.0%25 id in 98 aa%2C and to Serratia marcescens small DNA binding protein Fis TR:AAC77881 (EMBL:AF040378) (98 aa) fasta scores: E(): 0%2C98.0%25 id in 98 aa;gbkey=CDS;gene=fiS;inference=similar to sequence:INSDC:AF040378;product=DNA-binding protein Fis;protein_id=CAL22242.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4073167	4073232	.	-	.	ID=id8732;Note=Predicted helix-turn-helix motif with score 1824 (+5.40 SD) at aa 72-93%2C sequence GNQTRAALMMGINRGTLRKKLK;gbkey=misc_feature;gene=fiS
AL590842.1	EMBL	gene	4073470	4074435	.	-	.	ID=gene3600;Name=YPO3655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3655
AL590842.1	EMBL	CDS	4073470	4074435	.	-	0	ID=cds3552;Parent=gene3600;Dbxref=GOA:Q8ZAX7,InterPro:IPR001269,InterPro:IPR004652,InterPro:IPR013785,InterPro:IPR018517,InterPro:IPR024036,NCBI_GP:CAL22243.1;Name=CAL22243.1;Note=Similar to Escherichia coli hypothetical protein YhdG SW:YHDG_ECOLI (P25717) (321 aa) fasta scores: E(): 0%2C87.9%25 id in 321 aa%2C and to Serratia marcescens YhdG homolog TR:O52532 (EMBL:AF040378) (334 aa) fasta scores: E(): 0%2C92.2%25 id in 321 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF040378;product=conserved hypothetical protein;protein_id=CAL22243.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4073473	4074402	.	-	.	ID=id8733;Note=Pfam match to entry PF01207 UPF0034%2C Uncharacterized protein family UPF0034%2C score 512.10%2C E-value 4.1e-150;gbkey=misc_feature;inference=protein motif:PF01207
AL590842.1	EMBL	sequence_feature	4074100	4074156	.	-	.	ID=id8734;Note=PS01136 Uncharacterized protein family UPF0034 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01136
AL590842.1	EMBL	gene	4075024	4075905	.	-	.	ID=gene3601;Name=prmA;gbkey=Gene;gene=prmA;gene_biotype=protein_coding;locus_tag=YPO3656
AL590842.1	EMBL	CDS	4075024	4075905	.	-	0	ID=cds3553;Parent=gene3601;Dbxref=GOA:Q8ZAX6,InterPro:IPR004498,InterPro:IPR010456,InterPro:IPR029063,NCBI_GP:CAL22244.1;Name=CAL22244.1;Note=Similar to Escherichia coli ribosomal protein L11 methyltransferase PrmA SW:PRMA_ECOLI (P28637) (293 aa) fasta scores: E(): 0%2C 85.3%25 id in 292 aa%2C and to Vibrio cholerae ribosomal protein L11 methyltransferase Vc0293 TR:Q9KV64 (EMBL:AE004117) (295 aa) fasta scores: E(): 0%2C70.3%25 id in 293 aa;gbkey=CDS;gene=prmA;inference=similar to sequence:INSDC:AE004117;product=ribosomal protein L11 methyltransferase;protein_id=CAL22244.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4075153	4075170	.	-	.	ID=id8735;Note=PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.;gbkey=misc_feature;gene=prmA;inference=protein motif:ProSite:PS00343
AL590842.1	EMBL	gene	4075981	4077435	.	-	.	ID=gene3602;Name=panF;gbkey=Gene;gene=panF;gene_biotype=protein_coding;locus_tag=YPO3657
AL590842.1	EMBL	CDS	4075981	4077435	.	-	0	ID=cds3554;Parent=gene3602;Dbxref=GOA:Q0WAZ6,InterPro:IPR001734,InterPro:IPR011849,InterPro:IPR018212,InterPro:IPR019900,UniProtKB/TrEMBL:Q0WAZ6,NCBI_GP:CAL22245.1;Name=CAL22245.1;Note=Similar to Escherichia coli sodium/pantothenate symporter PanF SW:PANF_ECOLI (P16256) (483 aa) fasta scores: E(): 0%2C 82.8%25 id in 470 aa%2C and to Haemophilus influenzae sodium/pantothenate symporter PanF or Hi0975 SW:PANF_HAEIN (P44963) (484 aa) fasta scores: E(): 0%2C 63.1%25 id in 472 aa;gbkey=CDS;gene=panF;inference=protein motif:TMHMM:2.0;product=sodium/pantothenate symporter;protein_id=CAL22245.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4076032	4076097	.	-	.	ID=id8736;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=panF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4076110	4076175	.	-	.	ID=id8737;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=panF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4076134	4076196	.	-	.	ID=id8738;Note=PS00457 Sodium:solute symporter family signature 2.;gbkey=misc_feature;gene=panF;inference=protein motif:ProSite:PS00457
AL590842.1	EMBL	sequence_feature	4076140	4077330	.	-	.	ID=id8739;Note=Pfam match to entry PF00474 SSF%2C Sodium:solute symporter family%2C score 613.40%2C E-value 1.3e-180;gbkey=misc_feature;gene=panF;inference=protein motif:PF00474
AL590842.1	EMBL	sequence_feature	4076197	4076262	.	-	.	ID=id8740;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=panF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4076278	4076328	.	-	.	ID=id8741;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=panF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4076446	4076511	.	-	.	ID=id8742;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=panF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4076557	4076622	.	-	.	ID=id8743;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=panF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4076662	4076727	.	-	.	ID=id8744;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=panF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4076803	4076868	.	-	.	ID=id8745;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=panF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4076890	4076955	.	-	.	ID=id8746;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=panF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4076896	4076973	.	-	.	ID=id8747;Note=PS00456 Sodium:solute symporter family signature 1.;gbkey=misc_feature;gene=panF;inference=protein motif:ProSite:PS00456
AL590842.1	EMBL	sequence_feature	4077001	4077066	.	-	.	ID=id8748;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=panF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4077151	4077216	.	-	.	ID=id8749;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=panF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4077247	4077303	.	-	.	ID=id8750;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=panF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4077364	4077420	.	-	.	ID=id8751;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=panF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4077425	4077667	.	-	.	ID=gene3603;Name=yhdT;gbkey=Gene;gene=yhdT;gene_biotype=protein_coding;locus_tag=YPO3657a
AL590842.1	EMBL	CDS	4077425	4077667	.	-	0	ID=cds3555;Parent=gene3603;Dbxref=InterPro:IPR010398,UniProtKB/TrEMBL:Q7CL61,NCBI_GP:CAL22246.1;Name=CAL22246.1;Note=Similar to Escherichia coli hypothetical 9.1 kDa protein in accC-panF intergenic region YhdT SW:YHDT_ECOLI (P45566) (80 aa) fasta scores: E(): 1.1e-20%2C 68.4%25 id in 79 aa%2C and to Haemophilus influenzae hypothetical protein Hi0974.1 SW:YHDT_HAEIN (P46455) (85 aa) fasta scores: E(): 1.2e-12%2C 47.4%25 id in 78 aa;gbkey=CDS;gene=yhdT;product=putative membrane protein;protein_id=CAL22246.1;transl_table=11
AL590842.1	EMBL	gene	4077479	4077536	.	-	.	ID=gene3604;Name=YPO3657b;gbkey=Gene;gene_biotype=other;locus_tag=YPO3657b
AL590842.1	EMBL	sequence_feature	4077479	4077536	.	-	.	ID=id8752;Note=one of 2 probable transmembrane helices predicted for YPO3657b by TMHMM2.0;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4077566	4077634	.	-	.	ID=id8753;Note=one of 2 probable transmembrane helices predicted for YPO3657b by TMHMM2.0;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4077566	4077634	.	-	.	ID=gene3605;Name=YPO3657b;gbkey=Gene;gene_biotype=other;locus_tag=YPO3657b
AL590842.1	EMBL	gene	4079025	4080374	.	-	.	ID=gene3606;Name=accC;gbkey=Gene;gene=accC;gene_biotype=protein_coding;gene_synonym=fabG;locus_tag=YPO3658
AL590842.1	EMBL	CDS	4079025	4080374	.	-	0	ID=cds3556;Parent=gene3606;Dbxref=GOA:Q7CL62,InterPro:IPR004549,InterPro:IPR005479,InterPro:IPR005481,InterPro:IPR005482,InterPro:IPR011054,InterPro:IPR011761,InterPro:IPR011764,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016185,UniProtKB/TrEMBL:Q7CL62,NCBI_GP:CAL22247.1;Name=CAL22247.1;Note=Similar to Escherichia coli biotin carboxylase AccC or FabG SW:ACCC_ECOLI (P24182) (449 aa) fasta scores: E(): 0%2C 92.4%25 id in 448 aa%2C and to Vibrio cholerae acetyl-coa carboxylase%2C biotin carboxylase Vc0295 TR:Q9KV62 (EMBL:AE004117) (447 aa) fasta scores: E(): 0%2C 85.9%25 id in 447 aa;gbkey=CDS;gene=accC;inference=similar to sequence:INSDC:AE004117;product=biotin carboxylase;protein_id=CAL22247.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4079265	4080365	.	-	.	ID=id8754;Note=Pfam match to entry PF00289 CPSase_L_chain%2CCarbamoyl-phosphate synthase (CPSase)%2C score 688.70%2CE-value 2.9e-203;gbkey=misc_feature;gene=accC;inference=protein motif:PF00289
AL590842.1	EMBL	sequence_feature	4079496	4079519	.	-	.	ID=id8755;Note=PS00867 Carbamoyl-phosphate synthase subdomain signature 2.;gbkey=misc_feature;gene=accC;inference=protein motif:ProSite:PS00867
AL590842.1	EMBL	sequence_feature	4079871	4079915	.	-	.	ID=id8756;Note=PS00866 Carbamoyl-phosphate synthase subdomain signature 1.;gbkey=misc_feature;gene=accC;inference=protein motif:ProSite:PS00866
AL590842.1	EMBL	gene	4080386	4080850	.	-	.	ID=gene3607;Name=accB;gbkey=Gene;gene=accB;gene_biotype=protein_coding;gene_synonym=fabE;locus_tag=YPO3659
AL590842.1	EMBL	CDS	4080386	4080850	.	-	0	ID=cds3557;Parent=gene3607;Dbxref=GOA:Q0WAZ3,InterPro:IPR000089,InterPro:IPR001249,InterPro:IPR001882,InterPro:IPR011053,UniProtKB/TrEMBL:Q0WAZ3,NCBI_GP:CAL22248.1;Name=CAL22248.1;Note=Similar to Escherichia coli biotin carboxyl carrier protein of acetyl-CoA carboxylase AccB or FabE SW:BCCP_ECOLI (P02905) (156 aa) fasta scores: E(): 0%2C 82.9%25 id in 158 aa%2C and to Pseudomonas aeruginosa biotin carboxyl carrier protein of acetyl-CoA carboxylase AccB or FabE or Pa4847 SW:BCCP_PSEAE (P37799) (156 aa) fasta scores: E(): 1.1e-27%2C 65.8%25 id in 155 aa;gbkey=CDS;gene=accB;product=biotin carboxyl carrier protein of acetyl-CoA carboxylase;protein_id=CAL22248.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4080392	4080616	.	-	.	ID=id8757;Note=Pfam match to entry PF00364 biotin_lipoyl%2CBiotin-requiring enzymes%2C score 130.30%2C E-value 3.6e-35;gbkey=misc_feature;gene=accB;inference=protein motif:PF00364
AL590842.1	EMBL	sequence_feature	4080470	4080523	.	-	.	ID=id8758;Note=PS00188 Biotin-requiring enzymes attachment site.;gbkey=misc_feature;gene=accB;inference=protein motif:ProSite:PS00188
AL590842.1	EMBL	gene	4081008	4081460	.	-	.	ID=gene3608;Name=aroQ;gbkey=Gene;gene=aroQ;gene_biotype=protein_coding;locus_tag=YPO3660
AL590842.1	EMBL	CDS	4081008	4081460	.	-	0	ID=cds3558;Parent=gene3608;Dbxref=GOA:Q8ZAX1,InterPro:IPR001874,InterPro:IPR018509,PDB:3LWZ,NCBI_GP:CAL22249.1;Name=CAL22249.1;Note=Similar to Actinobacillus pleuropneumoniae 3-dehydroquinate dehydratase AroQ SW:AROQ_ACTPL (P43877) (154 aa) fasta scores: E(): 0%2C 66.9%25 id in 142 aa%2C and to Aeromonas salmonicida subsp. salmonicida type II 3-dehydroquinase AroD TR:Q9ZIW1 (EMBL:AF011408) (149 aa) fasta scores: E(): 0%2C 73.3%25 id in 146 aa;gbkey=CDS;gene=aroQ;inference=similar to sequence:INSDC:AF011408;product=putative class II dehydroquinase;protein_id=CAL22249.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4081017	4081328	.	-	.	ID=id8759;Note=Pfam match to entry PF01220 DHquinase_II%2CDehydroquinase class II%2C score 173.90%2C E-value 2.6e-48;gbkey=misc_feature;gene=aroQ;inference=protein motif:PF01220
AL590842.1	EMBL	gene	4081723	4082343	.	-	.	ID=gene3609;Name=YPO3661;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3661
AL590842.1	EMBL	CDS	4081723	4082343	.	-	0	ID=cds3559;Parent=gene3609;Dbxref=GOA:Q8ZAX0,InterPro:IPR013130,InterPro:IPR022837,NCBI_GP:CAL22250.1;Name=CAL22250.1;Note=Similar to Escherichia coli from bases 2030342 to 2040230 TR:P76343 (EMBL:AE000288) (211 aa) fasta scores: E(): 0%2C 69.0%25 id in 203 aa%2C and to Pseudomonas aeruginosa hypothetical protein Pa4691 TR:AAG08077 (EMBL:AE004883) (202 aa) fasta scores: E(): 3e-24%2C 41.8%25 id in 196 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004883;product=putative membrane protein;protein_id=CAL22250.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4081762	4081827	.	-	.	ID=id8760;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4081843	4081893	.	-	.	ID=id8761;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4081930	4081995	.	-	.	ID=id8762;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4082041	4082106	.	-	.	ID=id8763;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4082143	4082208	.	-	.	ID=id8764;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4082343	4083443	.	-	.	ID=gene3610;Name=YPO3662;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3662
AL590842.1	EMBL	CDS	4082343	4083443	.	-	0	ID=cds3560;Parent=gene3610;Dbxref=GOA:Q8ZAW9,InterPro:IPR000572,InterPro:IPR022867,NCBI_GP:CAL22251.1;Name=CAL22251.1;Note=Similar to Escherichia coli hypothetical protein B1971 TR:P76342 (EMBL:AE000288) (334 aa) fasta scores: E(): 0%2C 75.4%25 id in 334 aa%2C and to Pasteurella multocida hypothetical protein PM0537 TR:AAK02621 (EMBL:AE006089) (343 aa) fasta scores: E(): 0%2C 64.3%25 id in 333 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE006089;product=conserved hypothetical protein;protein_id=CAL22251.1;transl_table=11
AL590842.1	EMBL	gene	4083666	4084643	.	-	.	ID=gene3611;Name=yhdH;gbkey=Gene;gene=yhdH;gene_biotype=protein_coding;locus_tag=YPO3663
AL590842.1	EMBL	CDS	4083666	4084643	.	-	0	ID=cds3561;Parent=gene3611;Dbxref=GOA:Q7CL63,InterPro:IPR002085,InterPro:IPR011032,InterPro:IPR013149,InterPro:IPR013154,InterPro:IPR014188,InterPro:IPR016040,UniProtKB/TrEMBL:Q7CL63,NCBI_GP:CAL22252.1;Name=CAL22252.1;Note=Similar to Escherichia coli protein YhdH SW:YHDH_ECOLI (P26646) (324 aa) fasta scores: E(): 0%2C 74.4%25 id in 324 aa%2C and to Vibrio cholerae zinc-binding alcohol dehydrogenase Vc0026 TR:Q9KVW2 (EMBL:AE004094) (326 aa) fasta scores: E(): 0%2C 63.2%25 id in 323 aa;gbkey=CDS;gene=yhdH;inference=similar to sequence:INSDC:AE004094;product=probable zinc-binding dehydrogenase;protein_id=CAL22252.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4083672	4084604	.	-	.	ID=id8765;Note=Pfam match to entry PF00107 adh_zinc%2C Zinc-binding dehydrogenases%2C score 110.60%2C E-value 3.1e-29;gbkey=misc_feature;gene=yhdH;inference=protein motif:PF00107
AL590842.1	EMBL	gene	4085044	4086960	.	+	.	ID=gene3612;Name=yhdA;gbkey=Gene;gene=yhdA;gene_biotype=protein_coding;locus_tag=YPO3664
AL590842.1	EMBL	CDS	4085044	4086960	.	+	0	ID=cds3562;Parent=gene3612;Dbxref=InterPro:IPR000160,InterPro:IPR001633,InterPro:IPR029787,UniProtKB/TrEMBL:Q7CL64,NCBI_GP:CAL22253.1;Name=CAL22253.1;Note=Similar to Escherichia coli hypothetical 73.3 kDa protein in mreB-accB intergenic region YhdA SW:YHDA_ECOLI (P13518) (646 aa) fasta scores: E(): 0%2C 50.7%25 id in 641 aa%2Cand to Vibrio cholerae MshA biogenesis protein Vc0398 TR:Q9KUW1 (EMBL:AE004128) (673 aa) fasta scores: E(): 0%2C36.1%25 id in 646 aa;gbkey=CDS;gene=yhdA;inference=similar to sequence:INSDC:AE004128;product=putative exported protein;protein_id=CAL22253.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4085440	4085508	.	+	.	ID=id8766;Note=2 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhdA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4085692	4086177	.	+	.	ID=id8767;Note=Pfam match to entry PF00990 DUF9%2C Domain of unknown function DUF9%2C score 64.10%2C E-value 3.1e-15;gbkey=misc_feature;gene=yhdA;inference=protein motif:PF00990
AL590842.1	EMBL	sequence_feature	4086217	4086939	.	+	.	ID=id8768;Note=Pfam match to entry PF00563 DUF2%2C Domain of unknown function 2%2C score 227.60%2C E-value 1.8e-64;gbkey=misc_feature;gene=yhdA;inference=protein motif:PF00563
AL590842.1	EMBL	gene	4087297	4088340	.	+	.	ID=gene3613;Name=envB;gbkey=Gene;gene=envB;gene_biotype=protein_coding;gene_synonym=mreB,rodY;locus_tag=YPO3665
AL590842.1	EMBL	CDS	4087297	4088340	.	+	0	ID=cds3563;Parent=gene3613;Dbxref=GOA:Q7CL65,InterPro:IPR004753,UniProtKB/TrEMBL:Q7CL65,NCBI_GP:CAL22254.1;Name=CAL22254.1;Note=Similar to Escherichia coli rod shape-determining protein MreB or EnvB or RodY SW:MREB_ECOLI (P13519) (347 aa) fasta scores: E(): 0%2C 99.1%25 id in 347 aa%2C and to Vibrio cholerae MreB or Vc0415 TR:Q9ZA92 (EMBL:AF079234) (347 aa) fasta scores: E(): 0%2C 90.2%25 id in 347 aa;gbkey=CDS;gene=envB;inference=similar to sequence:INSDC:AF079234;product=rod shape-determining protein MreB;protein_id=CAL22254.1;transl_table=11
AL590842.1	EMBL	gene	4088544	4089539	.	+	.	ID=gene3614;Name=mreC;gbkey=Gene;gene=mreC;gene_biotype=protein_coding;locus_tag=YPO3666
AL590842.1	EMBL	CDS	4088544	4089539	.	+	0	ID=cds3564;Parent=gene3614;Dbxref=GOA:Q7CL66,InterPro:IPR007221,UniProtKB/TrEMBL:Q7CL66,NCBI_GP:CAL22255.1;Name=CAL22255.1;Note=Similar to Escherichia coli rod shape-determining protein MreC SW:MREC_ECOLI (P16926) (367 aa) fasta scores: E(): 0%2C 77.9%25 id in 335 aa%2C and to Haemophilus influenzae rod shape-determining protein MreC or Hi0038 SW:MREC_HAEIN (P44475) (351 aa) fasta scores: E(): 0%2C 51.2%25 id in 295 aa;gbkey=CDS;gene=mreC;product=rod shape-determining protein MreC;protein_id=CAL22255.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4088580	4088648	.	+	.	ID=id8769;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=mreC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4089536	4090024	.	+	.	ID=gene3615;Name=mreD;gbkey=Gene;gene=mreD;gene_biotype=protein_coding;locus_tag=YPO3667
AL590842.1	EMBL	CDS	4089536	4090024	.	+	0	ID=cds3565;Parent=gene3615;Dbxref=GOA:Q7CL67,InterPro:IPR007227,InterPro:IPR026034,UniProtKB/TrEMBL:Q7CL67,NCBI_GP:CAL22256.1;Name=CAL22256.1;Note=Similar to Escherichia coli rod shape-determining protein MreD SW:MRED_ECOLI (P16927) (162 aa) fasta scores: E(): 0%2C 76.1%25 id in 159 aa%2C and to Vibrio cholerae rod shape-determining protein MreD Vc0417 TR:Q9KUU8 (EMBL:AE004129) (162 aa) fasta scores: E(): 0%2C 55.5%25 id in 155 aa;gbkey=CDS;gene=mreD;inference=similar to sequence:INSDC:AE004129;product=rod shape-determining protein MreD;protein_id=CAL22256.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4089563	4089616	.	+	.	ID=id8770;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=mreD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4089635	4089694	.	+	.	ID=id8771;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=mreD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4089737	4089805	.	+	.	ID=id8772;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=mreD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4089824	4089892	.	+	.	ID=id8773;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=mreD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4089935	4089988	.	+	.	ID=id8774;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=mreD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4090038	4090631	.	+	.	ID=gene3616;Name=yhdE;gbkey=Gene;gene=yhdE;gene_biotype=protein_coding;locus_tag=YPO3668
AL590842.1	EMBL	CDS	4090038	4090631	.	+	0	ID=cds3566;Parent=gene3616;Dbxref=GOA:P58636,InterPro:IPR003697,InterPro:IPR029001,NCBI_GP:CAL22257.1;Name=CAL22257.1;Note=Similar to Escherichia coli protein YhdE SW:YHDE_ECOLI (P25536) (197 aa) fasta scores: E(): 0%2C 70.4%25 id in 196 aa%2C and to Vibrio cholerae Maf protein Vc0418 TR:Q9KUU7 (EMBL:AE004129) (205 aa) fasta scores: E(): 4.1e-31%2C 55.1%25 id in 185 aa;gbkey=CDS;gene=yhdE;inference=similar to sequence:INSDC:AE004129;product=putative inhibitor of septum formation;protein_id=CAL22257.1;transl_table=11
AL590842.1	EMBL	gene	4090621	4092090	.	+	.	ID=gene3617;Name=cafA;gbkey=Gene;gene=cafA;gene_biotype=protein_coding;gene_synonym=rng;locus_tag=YPO3669
AL590842.1	EMBL	CDS	4090621	4092090	.	+	0	ID=cds3567;Parent=gene3617;Dbxref=GOA:Q7CL68,InterPro:IPR003029,InterPro:IPR004659,InterPro:IPR012340,InterPro:IPR019307,InterPro:IPR022967,UniProtKB/TrEMBL:Q7CL68,NCBI_GP:CAL22258.1;Name=CAL22258.1;Note=Similar to Escherichia coli ribonuclease G CafA or Rng SW:RNG_ECOLI (P25537) (488 aa) fasta scores: E(): 0%2C90.2%25 id in 488 aa%2C and to Vibrio cholerae cytoplasmic axial filament protein Vc0419 TR:Q9KUU6 (EMBL:AE004129) (489 aa) fasta scores: E(): 0%2C 79.8%25 id in 489 aa;gbkey=CDS;gene=cafA;inference=similar to sequence:INSDC:AE004129;product=ribonuclease G;protein_id=CAL22258.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4090723	4090986	.	+	.	ID=id8775;Note=Pfam match to entry PF00575 S1%2C S1 RNA binding domain%2C score 64.50%2C E-value 3.5e-16;gbkey=misc_feature;gene=cafA;inference=protein motif:PF00575
AL590842.1	EMBL	gene	4092184	4096107	.	+	.	ID=gene3618;Name=YPO3670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3670
AL590842.1	EMBL	CDS	4092184	4096107	.	+	0	ID=cds3568;Parent=gene3618;Dbxref=InterPro:IPR011836,InterPro:IPR025263,UniProtKB/TrEMBL:Q74PM2,NCBI_GP:CAL22259.1;Name=CAL22259.1;Note=Similar to Vibrio cholerae hypothetical protein Vc0420 TR:Q9KUU5 (EMBL:AE004129) (1291 aa) fasta scores: E(): 0%2C 29.3%25 id in 1341 aa%2C and to Pseudomonas aeruginosa hypothetical protein Pa4476 TR:AAG07864 (EMBL:AE004861) (1276 aa) fasta scores: E(): 9.1e-32%2C 23.7%25 id in 1335 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004861;product=putative exported protein;protein_id=CAL22259.1;transl_table=11
AL590842.1	EMBL	gene	4096104	4096973	.	+	.	ID=gene3619;Name=YPO3671;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3671
AL590842.1	EMBL	CDS	4096104	4096973	.	+	0	ID=cds3569;Parent=gene3619;Dbxref=GOA:Q7CL69,InterPro:IPR001110,InterPro:IPR003010,UniProtKB/TrEMBL:Q7CL69,NCBI_GP:CAL22260.1;Name=CAL22260.1;Note=Similar to Mus musculus nitrilase 1 nit1 TR:Q9R1N4 (EMBL:AF069988) (323 aa) fasta scores: E(): 0%2C 38.4%25 id in 284 aa%2C and to Vibrio cholerae hypothetical protein Vc0421 vc0421 TR:Q9KUU4 (EMBL:AE004129) (275 aa) fasta scores: E(): 0%2C 48.1%25 id in 270 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF069988;product=putative carbon-nitrogen hydrolase;protein_id=CAL22260.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4096110	4096922	.	+	.	ID=id8776;Note=Pfam match to entry PF00795 CN_hydrolase%2CCarbon-nitrogen hydrolase%2C score 194.40%2C E-value 1.8e-54;gbkey=misc_feature;inference=protein motif:PF00795
AL590842.1	EMBL	sequence_feature	4096560	4096622	.	+	.	ID=id8777;Note=PS01227 Uncharacterized protein family UPF0012 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01227
AL590842.1	EMBL	gene	4096985	4098430	.	+	.	ID=gene3620;Name=tldD;gbkey=Gene;gene=tldD;gene_biotype=protein_coding;locus_tag=YPO3672
AL590842.1	EMBL	CDS	4096985	4098430	.	+	0	ID=cds3570;Parent=gene3620;Dbxref=InterPro:IPR002510,InterPro:IPR025502,UniProtKB/TrEMBL:Q7CL70,NCBI_GP:CAL22261.1;Name=CAL22261.1;Note=Similar to Escherichia coli TldD protein%2C modulator of interaction between LetD protein and DNA gyrase SW:TLDD_ECOLI (P46473) (481 aa) fasta scores: E(): 0%2C 84.4%25 id in 481 aa%2C and to Vibrio cholerae TldD protein VC0422 TR:Q9KUU3 (EMBL:AE004129) (481 aa) fasta scores: E(): 0%2C69.8%25 id in 480 aa;gbkey=CDS;gene=tldD;inference=similar to sequence:INSDC:AE004129;product=putative modulator of DNA gyrase;protein_id=CAL22261.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4097084	4097980	.	+	.	ID=id8778;Note=Pfam match to entry PF01523 PmbA_TldD%2C Putative modulator of DNA gyrase%2C score 373.30%2C E-value 2.5e-108;gbkey=misc_feature;gene=tldD;inference=protein motif:PF01523
AL590842.1	EMBL	gene	4098633	4101491	.	-	.	ID=gene3621;Name=YPO3673;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3673
AL590842.1	EMBL	CDS	4098633	4101491	.	-	0	ID=cds3571;Parent=gene3621;Dbxref=GOA:Q7CL71,InterPro:IPR000387,InterPro:IPR006530,InterPro:IPR016130,InterPro:IPR022385,InterPro:IPR029021,UniProtKB/TrEMBL:Q7CL71,NCBI_GP:CAL22262.1;Name=CAL22262.1;Note=Similar to Photorhabdus luminescens insecticidal toxin complex protein TccC TR:O85157 (EMBL:AF047028) (1043 aa) fasta scores: E(): 0%2C 52.2%25 id in 718 aa. Similar to YPO3674 (79.1%25 identity in 949 aa overlap)%2C YPO2312 (52.1%25 identity in 729 aa overlap) and YPO2380 (52.2%25 identity in 696 aa overlap). Note the differing C-terminus of the product of this CDS;gbkey=CDS;inference=similar to sequence:INSDC:AF047028;product=putative insecticidal toxin;protein_id=CAL22262.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4098879	4098917	.	-	.	ID=id8779;Note=PS00383 Tyrosine specific protein phosphatases active site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00383
AL590842.1	EMBL	sequence_feature	4100730	4100768	.	-	.	ID=id8780;Note=PS00213 Lipocalin signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00213
AL590842.1	EMBL	ribosome_entry_site	4101499	4101504	.	-	.	ID=id8781;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	4101516	4104551	.	-	.	ID=gene3622;Name=YPO3674;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3674
AL590842.1	EMBL	CDS	4101516	4104551	.	-	0	ID=cds3572;Parent=gene3622;Dbxref=GOA:Q0WAX8,InterPro:IPR000340,InterPro:IPR000387,InterPro:IPR006530,InterPro:IPR016130,InterPro:IPR022385,InterPro:IPR029021,UniProtKB/TrEMBL:Q0WAX8,NCBI_GP:CAL22263.1;Name=CAL22263.1;Note=Similar to Photorhabdus luminescens insecticidal toxin complex protein TccC TR:O85157 (EMBL:AF047028) (1043 aa) fasta scores: E(): 0%2C 53.7%25 id in 680 aa%2C to Serratia entomophila SepC TR:AAG09644 (EMBL:AF135182) (973 aa) fasta scores: E(): 0%2C 53.3%25 id in 685 aa. Similar to YPO3673 (79.1%25 identity in 949 aa overlap)%2C YPO2312 (50.3%25 identity in 773 aa overlap) and YPO2380 (51.4%25 identity in 699 aa overlap). Note the differing C-terminus of the product of this CDS;gbkey=CDS;inference=similar to sequence:INSDC:AF135182;product=putative insecticidal toxin;protein_id=CAL22263.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4101753	4101791	.	-	.	ID=id8782;Note=PS00383 Tyrosine specific protein phosphatases active site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00383
AL590842.1	EMBL	sequence_feature	4103586	4103624	.	-	.	ID=id8783;Note=PS00213 Lipocalin signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00213
AL590842.1	EMBL	gene	4104548	4104907	.	-	.	ID=gene3623;Name=YPO3675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3675
AL590842.1	EMBL	CDS	4104548	4104907	.	-	0	ID=cds3573;Parent=gene3623;Dbxref=UniProtKB/TrEMBL:Q0WAX7,NCBI_GP:CAL22264.1;Name=CAL22264.1;Note=no significant database matches;gbkey=CDS;product=putative exported protein;protein_id=CAL22264.1;transl_table=11
AL590842.1	EMBL	gene	4104904	4105305	.	-	.	ID=gene3624;Name=YPO3676;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3676
AL590842.1	EMBL	CDS	4104904	4105305	.	-	0	ID=cds3574;Parent=gene3624;Dbxref=InterPro:IPR009045,UniProtKB/TrEMBL:Q0WAX6,NCBI_GP:CAL22265.1;Name=CAL22265.1;Note=Similar to Bacteriophage P27 hypothetical 14.1 kDa protein TR:Q9MBZ3 (EMBL:AJ249351) (125 aa) fasta scores: E(): 1.7e-26%2C 52.5%25 id in 120 aa%2C and to bacteriophage PS3 Gp19 TR:O80284 (EMBL:AJ011579) (132 aa) fasta scores: E(): 3.3e-19%2C 46.0%25 id in 137 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ249351;product=putative phage-related protein;protein_id=CAL22265.1;transl_table=11
AL590842.1	EMBL	gene	4105318	4105620	.	-	.	ID=gene3625;Name=YPO3677;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3677
AL590842.1	EMBL	CDS	4105318	4105620	.	-	0	ID=cds3575;Parent=gene3625;Dbxref=UniProtKB/TrEMBL:Q7CL72,NCBI_GP:CAL22266.1;Name=CAL22266.1;Note=Similar to bacteriophage PS3 gp13 13 TR:O80283 (EMBL:AJ011579) (105 aa) fasta scores: E(): 3.2e-14%2C 41.7%25 id in 84 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ011579;product=putative phage-related protein;protein_id=CAL22266.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4105345	4105404	.	-	.	ID=id8784;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4105435	4105500	.	-	.	ID=id8785;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4105540	4105590	.	-	.	ID=id8786;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4105754	4110244	.	-	.	ID=gene3626;Name=tcaC;gbkey=Gene;gene=tcaC;gene_biotype=protein_coding;locus_tag=YPO3678
AL590842.1	EMBL	CDS	4105754	4110244	.	-	0	ID=cds3576;Parent=gene3626;Dbxref=GOA:Q74PN2,InterPro:IPR003284,InterPro:IPR022044,InterPro:IPR022045,UniProtKB/TrEMBL:Q74PN2,NCBI_GP:CAL22267.1;Name=CAL22267.1;Note=Similar to Photorhabdus luminescens insecticidal toxin complex protein TcaC TR:O85153 (EMBL:AF046867) (1485 aa) fasta scores: E(): 0%2C 48.6%25 id in 1517 aa%2C and to Serratia entomophila SepB TR:AAG09643 (EMBL:AF135182) (1428 aa) fasta scores: E(): 0%2C 44.5%25 id in 1515 aa. Contains a 2x repeat: RDPDLS between codons 480..491.;gbkey=CDS;gene=tcaC;inference=similar to sequence:INSDC:AF135182;product=insecticidal toxin complex;protein_id=CAL22267.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4108499	4108531	.	-	.	ID=id8787;Note=PS00626 Regulator of chromosome condensation (RCC1) signature 2.;gbkey=misc_feature;gene=tcaC;inference=protein motif:ProSite:PS00626
AL590842.1	EMBL	sequence_feature	4109570	4109635	.	-	.	ID=id8788;Note=Predicted helix-turn-helix motif with score 976 (+2.51 SD) at aa 224-245%2C sequence GYQYQAEDEQGIDEPSIYKAEK;gbkey=misc_feature;gene=tcaC
AL590842.1	EMBL	pseudogene	4110301	4113893	.	-	.	ID=gene3627;Name=tcaB;gbkey=Gene;gene=tcaB;gene_biotype=pseudogene;locus_tag=YPO3679;pseudo=true
AL590842.1	EMBL	CDS	4110301	4113893	.	-	0	ID=cds3577;Parent=gene3627;Note=Similar to Photorhabdus luminescens insecticidal toxin complex protein TcaB TR:O85152 (EMBL:AF046867) (1189 aa) fasta scores: E(): 0%2C 42.1%25 id in 1240 aa. There is a frameshift following codon 456. The frameshift occurs within within a homopolymeric tract of 6A. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=tcaB;inference=similar to sequence:INSDC:AF046867;product=insecticidal toxin complex protein TcaB (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	4111426	4111473	.	-	.	ID=id8789;Note=PS00012 Phosphopantetheine attachment site.;gbkey=misc_feature;gene=tcaB;inference=protein motif:ProSite:PS00012
AL590842.1	EMBL	gene	4113934	4116435	.	-	.	ID=gene3628;Name=YPO3681;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3681
AL590842.1	EMBL	CDS	4113934	4116435	.	-	0	ID=cds3578;Parent=gene3628;Dbxref=InterPro:IPR018003,UniProtKB/TrEMBL:Q0WAX3,NCBI_GP:CAL22269.1;Name=CAL22269.1;Note=Similar in its central region to Photorhabdus luminescens insecticidal toxin complex protein TcaA TR:O85151 (EMBL:AF046867) (1095 aa) fasta scores: E(): 2.1e-19%2C 35.2%25 id in 401 aa. Contains colied-coil domain at approx. residues 683..710;gbkey=CDS;inference=similar to sequence:INSDC:AF046867;product=putative insecticial toxin;protein_id=CAL22269.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4114000	4114065	.	-	.	ID=id8790;Note=Predicted helix-turn-helix motif with score 1195 (+3.26 SD) at aa 791-812%2C sequence KNHIYIAEKLKIHPGTIIKIKN;gbkey=misc_feature
AL590842.1	EMBL	sequence_feature	4115347	4115370	.	-	.	ID=id8791;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	ribosome_entry_site	4116442	4116445	.	-	.	ID=id8792;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL590842.1	EMBL	gene	4116671	4117537	.	-	.	ID=gene3629;Name=YPO3682;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3682
AL590842.1	EMBL	CDS	4116671	4117537	.	-	0	ID=cds3579;Parent=gene3629;Dbxref=GOA:Q0WAX2,InterPro:IPR000847,InterPro:IPR011991,UniProtKB/TrEMBL:Q0WAX2,NCBI_GP:CAL22270.1;Name=CAL22270.1;Note=Similar to Erwinia amylovora RlsA protein TR:O54509 (EMBL:AJ131559) (266 aa) fasta scores: E(): 6.3e-06%2C 28.5%25 id in 228 aa%2C and to Escherichia coli hypothetical transcriptional regulator YgfI SW:YGFI_ECOLI (P52044) (303 aa) fasta scores: E(): 2.8e-06%2C 27.8%25 id in 198 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ131559;product=putative lysR-family transcriptional regulatory protein;protein_id=CAL22270.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4117298	4117528	.	-	.	ID=id8793;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 64.40%2C E-value 2.4e-15;gbkey=misc_feature;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	4117394	4117486	.	-	.	ID=id8794;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00044
AL590842.1	EMBL	gene	4117798	4118709	.	-	.	ID=gene3630;Name=YPO3683;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3683
AL590842.1	EMBL	CDS	4117798	4118709	.	-	0	ID=cds3580;Parent=gene3630;Dbxref=GOA:Q7CL73,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CL73,NCBI_GP:CAL22271.1;Name=CAL22271.1;Note=Similar to Escherichia coli hypothetical transcriptional regulator YhcS SW:YHCS_ECOLI (P45691) (309 aa) fasta scores: E(): 0%2C 80.7%25 id in 301 aa%2C and to Pseudomonas aeruginosa probable transcriptional regulator PA2877 TR:AAG06265 (EMBL:AE004714) (297 aa) fasta scores: E(): 4.1e-27%2C 30.4%25 id in 296 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004714;product=probable lysR-family transcriptional regulatory protein;protein_id=CAL22271.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4118281	4118700	.	-	.	ID=id8795;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 165.80%2C E-value 7.3e-46;gbkey=misc_feature;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	4118596	4118661	.	-	.	ID=id8796;Note=Predicted helix-turn-helix motif with score 1251 (+3.45 SD) at aa 17-38%2C sequence GSFTAAARRLENSVSSISQTVS;gbkey=misc_feature
AL590842.1	EMBL	gene	4119012	4119215	.	+	.	ID=gene3631;Name=YPO3684;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3684
AL590842.1	EMBL	CDS	4119012	4119215	.	+	0	ID=cds3581;Parent=gene3631;Dbxref=GOA:Q8ZAV0,InterPro:IPR012451,NCBI_GP:CAL22272.1;Name=CAL22272.1;Note=Similar to Escherichia coli hypothetical 10.3 kDa protein in argR-cafA intergenic region YhcR SW:YHCR_ECOLI (P46478) (90 aa) fasta scores: E(): 1.4e-24%2C 81.8%25 id in 66 aa%2C and to Escherichia coli hypothetical 8.9 kDa protein in slyA-sodC intergenic region YdhI SW:YDHI_ECOLI (P76184) (78 aa) fasta scores: E(): 0.017%2C 34.4%25 id in 61 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL22272.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4119030	4119098	.	+	.	ID=id8797;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4119141	4119209	.	+	.	ID=id8798;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4119223	4120158	.	+	.	ID=gene3632;Name=yhcQ;gbkey=Gene;gene=yhcQ;gene_biotype=protein_coding;locus_tag=YPO3685
AL590842.1	EMBL	CDS	4119223	4120158	.	+	0	ID=cds3582;Parent=gene3632;Dbxref=GOA:Q8ZAU9,InterPro:IPR006143,InterPro:IPR022871,NCBI_GP:CAL22273.1;Name=CAL22273.1;Note=Similar to Escherichia coli hypothetical protein YhcQ SW:YHCQ_ECOLI (P46482) (310 aa) fasta scores: E(): 0%2C72.3%25 id in 311 aa%2C and to Escherichia coli fusaric acid resistance protein FusE TR:P76893 (EMBL:D90807) (329 aa) fasta scores: E(): 0%2C 38.5%25 id in 288 aa;gbkey=CDS;gene=yhcQ;inference=similar to sequence:INSDC:D90807;product=putative HlyD family secretion protein;protein_id=CAL22273.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4119358	4120080	.	+	.	ID=id8799;Note=Pfam match to entry PF00529 HlyD%2C HlyD family secretion protein%2C score 121.10%2C E-value 2.1e-32;gbkey=misc_feature;gene=yhcQ;inference=protein motif:PF00529
AL590842.1	EMBL	gene	4120160	4122115	.	+	.	ID=gene3633;Name=yhcP;gbkey=Gene;gene=yhcP;gene_biotype=protein_coding;locus_tag=YPO3686
AL590842.1	EMBL	CDS	4120160	4122115	.	+	0	ID=cds3583;Parent=gene3633;Dbxref=GOA:Q8ZAU8,InterPro:IPR006726,InterPro:IPR023706,NCBI_GP:CAL22274.1;Name=CAL22274.1;Note=Similar to Escherichia coli hypothetical 73.6 kDa protein in argR-cafA intergenic region YhcP SW:YHCP_ECOLI (P46481) (655 aa) fasta scores: E(): 0%2C 64.6%25 id in 642 aa;gbkey=CDS;gene=yhcP;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL22274.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4120352	4120420	.	+	.	ID=id8800;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhcP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4120430	4120489	.	+	.	ID=id8801;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhcP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4120508	4120576	.	+	.	ID=id8802;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhcP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4121267	4121335	.	+	.	ID=id8803;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhcP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4121372	4121431	.	+	.	ID=id8804;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhcP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4121441	4121500	.	+	.	ID=id8805;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhcP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4121519	4121581	.	+	.	ID=id8806;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhcP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4121609	4121662	.	+	.	ID=id8807;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhcP;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	pseudogene	4122382	4123850	.	+	.	ID=gene3634;Name=YPO3687;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO3687;pseudo=true
AL590842.1	EMBL	CDS	4122382	4123850	.	+	0	ID=cds3584;Parent=gene3634;Note=Similar to Escherichia coli succinate-semialdehyde dehydrogenase [NADP+] GabD SW:GABD_ECOLI (P25526) (482 aa) fasta scores: E(): 0%2C 56.4%25 id in 468 aa%2C and to Alcaligenes eutrophus succinate semialdehyde dehydrogenase GabD TR:Q9RBF6 (EMBL:AF175740) (483 aa) fasta scores: E(): 0%2C 54.1%25 id in 475 aa. There is a frameshift following codon 364. The frameshift occurs within a homopolymeric tract of 6G. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=similar to sequence:INSDC:AF175740;product=putative succinate-semialdehyde dehydrogenase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	4122457	4123509	.	+	.	ID=id8808;Note=Pfam match to entry PF00171 aldedh%2C Aldehyde dehydrogenase family%2C score 300.40%2C E-value 2.2e-86;gbkey=misc_feature;inference=protein motif:PF00171
AL590842.1	EMBL	sequence_feature	4123096	4123119	.	+	.	ID=id8809;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	4123159	4123182	.	+	.	ID=id8810;Note=PS00687 Aldehyde dehydrogenases glutamic acid active site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00687
AL590842.1	EMBL	sequence_feature	4123243	4123278	.	+	.	ID=id8811;Note=PS00070 Aldehyde dehydrogenases cysteine active site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00070
AL590842.1	EMBL	gene	4124060	4124518	.	+	.	ID=gene3635;Name=YPO3689;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3689
AL590842.1	EMBL	CDS	4124060	4124518	.	+	0	ID=cds3585;Parent=gene3635;Dbxref=GOA:Q0WAW7,InterPro:IPR000026,InterPro:IPR001887,InterPro:IPR016191,UniProtKB/TrEMBL:Q0WAW7,NCBI_GP:CAL22276.1;Name=CAL22276.1;Note=Similar to Bacillus amyloliquefaciens ribonuclease precursor SW:RNBR_BACAM (P00648) (157 aa) fasta scores: E(): 1.9e-23%2C 52.4%25 id in 124 aa%2C and to Bacillus circulans ribonuclease SW:RN_BACCI (P35078) (110 aa) fasta scores: E(): 2e-22%2C 62.0%25 id in 100 aa;gbkey=CDS;product=putative ribonuclease;protein_id=CAL22276.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4124216	4124497	.	+	.	ID=id8812;Note=Pfam match to entry PF00545 ribonuclease%2Cribonuclease.%2C score 61.50%2C E-value 7.5e-16;gbkey=misc_feature;inference=protein motif:PF00545
AL590842.1	EMBL	gene	4124523	4124804	.	+	.	ID=gene3636;Name=YPO3690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3690
AL590842.1	EMBL	CDS	4124523	4124804	.	+	0	ID=cds3586;Parent=gene3636;Dbxref=InterPro:IPR000468,UniProtKB/TrEMBL:Q7CL77,NCBI_GP:CAL22277.1;Name=CAL22277.1;Note=Similar to Bacillus amyloliquefaciens Barstar SW:BARS_BACAM (P11540) (89 aa) fasta scores: E(): 0.00075%2C33.3%25 id in 60 aa%2C and to Escherichia coli hypothetical protein YhcO SW:YHCO_ECOLI (P46480) (90 aa) fasta scores: E(): 9.4e-16%2C 53.0%25 id in 83 aa;gbkey=CDS;product=putative ribonuclease inhibitor;protein_id=CAL22277.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4124526	4124786	.	+	.	ID=id8813;Note=Pfam match to entry PF01337 Barstar%2C Barstar (barnase inhibitor)%2C score 10.30%2C E-value 0.0051;gbkey=misc_feature;inference=protein motif:PF01337
AL590842.1	EMBL	gene	4124916	4125464	.	-	.	ID=gene3637;Name=YPO3691;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3691
AL590842.1	EMBL	CDS	4124916	4125464	.	-	0	ID=cds3587;Parent=gene3637;Dbxref=InterPro:IPR006839,InterPro:IPR023153,NCBI_GP:CAL22278.1;Name=CAL22278.1;Note=Similar to Escherichia coli hypothetical protein YjgA or X96 SW:YJGA_ECOLI (P26650) (183 aa) fasta scores: E(): 0%2C 78.0%25 id in 182 aa%2C and to Haemophilus influenzae hypothetical protein HI1151 SW:YJGA_HAEIN (P45076) (178 aa) fasta scores: E(): 5.9e-31%2C 56.6%25 id in 175 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL22278.1;transl_table=11
AL590842.1	EMBL	gene	4125645	4126985	.	+	.	ID=gene3638;Name=pmbA;gbkey=Gene;gene=pmbA;gene_biotype=protein_coding;gene_synonym=tldE;locus_tag=YPO3692
AL590842.1	EMBL	CDS	4125645	4126985	.	+	0	ID=cds3588;Parent=gene3638;Dbxref=InterPro:IPR002510,UniProtKB/TrEMBL:Q7CL78,NCBI_GP:CAL22279.1;Name=CAL22279.1;Note=Similar to Escherichia coli PmbA protein or TldE SW:PMBA_ECOLI (P24231) (450 aa) fasta scores: E(): 0%2C 82.7%25 id in 446 aa%2C and to Vibrio cholerae PmbA protein Vc2535 TR:Q9KP44 (EMBL:AE004322) (447 aa) fasta scores: E(): 0%2C66.9%25 id in 447 aa;gbkey=CDS;gene=pmbA;inference=similar to sequence:INSDC:AE004322;product=Putative modulator of DNA gyrase;protein_id=CAL22279.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4125732	4126613	.	+	.	ID=id8814;Note=Pfam match to entry PF01523 PmbA_TldD%2C Putative modulator of DNA gyrase%2C score 321.20%2C E-value 1.2e-92;gbkey=misc_feature;gene=pmbA;inference=protein motif:PF01523
AL590842.1	EMBL	gene	4127240	4127878	.	+	.	ID=gene3639;Name=YPO3693;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3693
AL590842.1	EMBL	CDS	4127240	4127878	.	+	0	ID=cds3589;Parent=gene3639;Dbxref=UniProtKB/TrEMBL:Q0WAW3,NCBI_GP:CAL22280.1;Name=CAL22280.1;Note=Weakly similar to Haemophilus influenzae methionine aminopeptidase Map or HI1722 SW:AMPM_HAEIN (P44421) (268 aa) fasta scores: E(): 2.1%2C 26.6%25 id in 199 aa%2C and to the C-terminal region of Mycobacterium tuberculosis prolyl-tRNA synthetase ProS or Rv2845c or Mtcy24a1.12 SW:SYP_MYCTU (O05814) (582 aa) fasta scores: E(): 1.9%2C 27.3%25 id in 128 aa;gbkey=CDS;product=hypothetical protein;protein_id=CAL22280.1;transl_table=11
AL590842.1	EMBL	gene	4128086	4128472	.	+	.	ID=gene3640;Name=YPO3694;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3694
AL590842.1	EMBL	CDS	4128086	4128472	.	+	0	ID=cds3590;Parent=gene3640;Dbxref=GOA:Q8ZAU2,InterPro:IPR009155,InterPro:IPR010980,NCBI_GP:CAL22281.1;Name=CAL22281.1;Note=Similar to Escherichia coli soluble cytochrome B562 precursor CybC SW:C562_ECOLI (P00192) (128 aa) fasta scores: E(): 8.3e-21%2C 51.6%25 id in 128 aa%2C and to the previously sequenced Yersinia pestis cytochrome C CybC TR:Q9X6B1 (EMBL:AF135170) (127 aa) fasta scores: E(): 6.3e-15%2C 46.1%25 id in 115 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF135170;product=putative cytochrome;protein_id=CAL22281.1;transl_table=11
AL590842.1	EMBL	gene	4128696	4129106	.	-	.	ID=gene3641;Name=rnk;gbkey=Gene;gene=rnk;gene_biotype=protein_coding;locus_tag=YPO3695
AL590842.1	EMBL	CDS	4128696	4129106	.	-	0	ID=cds3591;Parent=gene3641;Dbxref=GOA:Q7CL79,InterPro:IPR001437,InterPro:IPR023459,InterPro:IPR028625,InterPro:IPR029462,UniProtKB/TrEMBL:Q7CL79,NCBI_GP:CAL22282.1;Name=CAL22282.1;Note=Similar to Escherichia coli regulator of nucleoside diphosphate kinase Rnk SW:RNK_ECOLI (P40679) (136 aa) fasta scores: E(): 0%2C 64.9%25 id in 134 aa%2C and to Vibrio cholerae regulator of nucleoside diphosphate kinase VCA0607 TR:Q9KLY4 (EMBL:AE004391) (135 aa) fasta scores: E(): 2.1e-19%2C 46.2%25 id in 132 aa;gbkey=CDS;gene=rnk;inference=similar to sequence:INSDC:AE004391;product=regulator of nucleoside diphosphate kinase;protein_id=CAL22282.1;transl_table=11
AL590842.1	EMBL	gene	4129459	4131126	.	-	.	ID=gene3642;Name=olgH;gbkey=Gene;gene=olgH;gene_biotype=protein_coding;gene_synonym=treC;locus_tag=YPO3696
AL590842.1	EMBL	CDS	4129459	4131126	.	-	0	ID=cds3592;Parent=gene3642;Dbxref=GOA:Q7CL80,InterPro:IPR006047,InterPro:IPR006589,InterPro:IPR012769,InterPro:IPR013780,InterPro:IPR013781,InterPro:IPR015902,InterPro:IPR017853,UniProtKB/TrEMBL:Q7CL80,NCBI_GP:CAL22283.1;Name=CAL22283.1;Note=Similar to Escherichia coli trehalose-6-phosphate hydrolase TreC or OlgH SW:TREC_ECOLI (P28904) (551 aa) fasta scores: E(): 0%2C 74.0%25 id in 547 aa%2C and to Vibrio cholerae trehalose-6-phosphate hydrolase Vc0911 TR:Q9KTJ1 (EMBL:AE004175) (562 aa) fasta scores: E(): 0%2C 60.9%25 id in 550 aa;gbkey=CDS;gene=olgH;inference=similar to sequence:INSDC:AE004175;product=putative trehalose-6-phosphate hydrolase;protein_id=CAL22283.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4129708	4131093	.	-	.	ID=id8815;Note=Pfam match to entry PF00128 alpha-amylase%2C Alpha amylase%2C score 497.70%2C E-value 9e-146;gbkey=misc_feature;gene=olgH;inference=protein motif:PF00128
AL590842.1	EMBL	gene	4131221	4132672	.	-	.	ID=gene3643;Name=treB;gbkey=Gene;gene=treB;gene_biotype=protein_coding;locus_tag=YPO3697
AL590842.1	EMBL	CDS	4131221	4132672	.	-	0	ID=cds3593;Parent=gene3643;Dbxref=GOA:Q7CL81,InterPro:IPR001996,InterPro:IPR003352,InterPro:IPR011296,InterPro:IPR013013,InterPro:IPR018113,UniProtKB/TrEMBL:Q7CL81,NCBI_GP:CAL22284.1;Name=CAL22284.1;Note=Similar to Escherichia coli PTS system%2Ctrehalose-specific IIBC component TreB SW:PTTB_ECOLI (P36672) (473 aa) fasta scores: E(): 0%2C 80.5%25 id in 471 aa%2Cand to Vibrio cholerae PTS system%2C trehalose-specific IIBC component Vc0910 TR:Q9KTJ2 (EMBL:AE004175) (478 aa) fasta scores: E(): 0%2C 70.0%25 id in 474 aa;gbkey=CDS;gene=treB;inference=similar to sequence:INSDC:AE004175;product=PTS system%2C trehalose-specific IIBC component;protein_id=CAL22284.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4131260	4131325	.	-	.	ID=id8816;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=treB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4131356	4131421	.	-	.	ID=id8817;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=treB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4131419	4132309	.	-	.	ID=id8818;Note=Pfam match to entry PF02378 PTS_EIIC%2Cphosphotransferase system%2C EIIB%2C score 65.80%2C E-value 9.5e-16;gbkey=misc_feature;gene=treB;inference=protein motif:PF02378
AL590842.1	EMBL	sequence_feature	4131461	4131526	.	-	.	ID=id8819;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=treB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4131557	4131613	.	-	.	ID=id8820;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=treB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4131677	4131742	.	-	.	ID=id8821;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=treB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4131803	4131868	.	-	.	ID=id8822;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=treB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4131905	4131958	.	-	.	ID=id8823;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=treB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4132019	4132084	.	-	.	ID=id8824;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=treB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4132106	4132171	.	-	.	ID=id8825;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=treB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4132232	4132297	.	-	.	ID=id8826;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=treB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4132508	4132609	.	-	.	ID=id8827;Note=Pfam match to entry PF00367 PTS_EIIB%2Cphosphotransferase system%2C EIIB%2C score 46.10%2C E-value 9.8e-12;gbkey=misc_feature;gene=treB;inference=protein motif:PF00367
AL590842.1	EMBL	sequence_feature	4132523	4132576	.	-	.	ID=id8828;Note=PS01035 PTS EIIB domains cysteine phosphorylation site signature.;gbkey=misc_feature;gene=treB;inference=protein motif:ProSite:PS01035
AL590842.1	EMBL	gene	4133047	4134000	.	-	.	ID=gene3644;Name=treR;gbkey=Gene;gene=treR;gene_biotype=protein_coding;locus_tag=YPO3698
AL590842.1	EMBL	CDS	4133047	4134000	.	-	0	ID=cds3594;Parent=gene3644;Dbxref=GOA:Q7CL82,InterPro:IPR000843,InterPro:IPR010982,InterPro:IPR012771,InterPro:IPR028082,UniProtKB/TrEMBL:Q7CL82,NCBI_GP:CAL22285.1;Name=CAL22285.1;Note=Similar to Escherichia coli trehalose operon repressor TreR SW:TRER_ECOLI (P36673) (315 aa) fasta scores: E(): 0%2C 62.0%25 id in 316 aa%2C and to Salmonella typhimurium trehalose operon repressor TreR SW:TRER_SALTY (P36674) (315 aa) fasta scores: E(): 0%2C 60.8%25 id in 316 aa;gbkey=CDS;gene=treR;product=trehalose operon repressor;protein_id=CAL22285.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4133122	4133820	.	-	.	ID=id8829;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 37.00%2C E-value 2.8e-08;gbkey=misc_feature;gene=treR;inference=protein motif:PF00532
AL590842.1	EMBL	sequence_feature	4133911	4133994	.	-	.	ID=id8830;Note=Pfam match to entry PF00356 lacI%2C Bacterial regulatory proteins%2C lacI family%2C score 46.40%2C E-value 1e-11;gbkey=misc_feature;gene=treR;inference=protein motif:PF00356
AL590842.1	EMBL	sequence_feature	4133923	4133988	.	-	.	ID=id8831;Note=Predicted helix-turn-helix motif with score 2348 (+7.18 SD) at aa 5-26%2C sequence LTIKDIARMSGVGKSTVSRVLN;gbkey=misc_feature;gene=treR
AL590842.1	EMBL	sequence_feature	4133926	4133982	.	-	.	ID=id8832;Note=PS00356 Bacterial regulatory proteins%2C lacI family signature.;gbkey=misc_feature;gene=treR;inference=protein motif:ProSite:PS00356
AL590842.1	EMBL	gene	4134234	4134710	.	-	.	ID=gene3645;Name=YPO3699;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3699
AL590842.1	EMBL	CDS	4134234	4134710	.	-	0	ID=cds3595;Parent=gene3645;Dbxref=UniProtKB/TrEMBL:Q7CL83,NCBI_GP:CAL22286.1;Name=CAL22286.1;Note=no significant database matches;gbkey=CDS;product=putative exported protein;protein_id=CAL22286.1;transl_table=11
AL590842.1	EMBL	repeat_region	4134760	4136713	.	-	.	ID=id8833;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	4134760	4134787	.	+	.	ID=id8834;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	4134826	4135608	.	-	.	ID=gene3646;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO3700
AL590842.1	EMBL	CDS	4134826	4135608	.	-	0	ID=cds3596;Parent=gene3646;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL22287.1;Name=CAL22287.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL22287.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4134901	4135440	.	-	.	ID=id8835;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	4135258	4135281	.	-	.	ID=id8836;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4135605	4136627	.	-	.	ID=gene3647;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO3701
AL590842.1	EMBL	CDS	4135605	4136627	.	-	0	ID=cds3597;Parent=gene3647;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL22288.1;Name=CAL22288.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL22288.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4135749	4136282	.	-	.	ID=id8837;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	sequence_feature	4136511	4136576	.	-	.	ID=id8838;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	4136520	4136603	.	-	.	ID=id8839;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	sequence_feature	4136686	4137909	.	+	.	ID=id8840;Note=Truncated IS1397-like insertion element: IS1661;gbkey=misc_feature
AL590842.1	EMBL	INVERTED	4136686	4136713	.	-	.	ID=id8841;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	4136714	4137028	.	+	.	ID=gene3648;Name=YPO3702;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3702;partial=true;start_range=.,4136714
AL590842.1	EMBL	CDS	4136714	4137028	.	+	0	ID=cds3598;Parent=gene3648;Dbxref=GOA:Q0WAV4,InterPro:IPR009057,UniProtKB/TrEMBL:Q0WAV4,NCBI_GP:CAL22289.1;Name=CAL22289.1;Note=This CDS has been disrupted by the insertion of an IS100 element. This truncated CDS shows similarities to Escherichia coli insertion element IS1397 OrfA hypothetical 20.1 kDa protein SW:YI9A_ECOLI (Q47309) (173 aa) fasta scores: E(): 37.3%25 identity in 102 aa overlap.%3B~was marked partial;gbkey=CDS;partial=true;product=insertion element IS1661 DNA-binding protein (partial);protein_id=CAL22289.1;start_range=.,4136714;transl_table=11
AL590842.1	EMBL	gene	4137082	4137867	.	+	.	ID=gene3649;Name=YPO3703;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3703
AL590842.1	EMBL	CDS	4137082	4137867	.	+	0	ID=cds3599;Parent=gene3649;Dbxref=GOA:Q7CKI6,InterPro:IPR001584,InterPro:IPR012337,InterPro:IPR025948,UniProtKB/TrEMBL:Q7CKI6,NCBI_GP:CAL22290.1;Name=CAL22290.1;Note=Similar to Escherichia coli insertion sequence IS1397 transposase%2C OrfB TR:Q47310 (EMBL:X92970) (240 aa) fasta scores: E(): 0%2C 53.0%25 id in 234 aa;gbkey=CDS;inference=similar to sequence:INSDC:X92970;product=transposase for insertion sequence IS1661;protein_id=CAL22290.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4137370	4137849	.	+	.	ID=id8842;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 141.50%2C E-value 9.6e-40;gbkey=misc_feature;inference=protein motif:PF00665
AL590842.1	EMBL	INVERTED	4137876	4137909	.	-	.	ID=id8843;Note=Inverted repeat for IS1661 insertion element;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	pseudogene	4137910	4138983	.	-	.	ID=gene3650;Name=YPO3704;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO3704;pseudo=true
AL590842.1	EMBL	CDS	4137910	4138983	.	-	0	ID=cds3600;Parent=gene3650;Note=This CDS is disrupted by the insertion of an IS166 element. It is lacking ~~250 amino acids at its C-terminal region. This truncated CDS is similar to Escherichia coli O157:H7 Z0260 protein TR:AAG54529 (EMBL:AE005198) (616 aa) fasta scores: E(): 0%2C 51.0%25 id in 357 aa%2C and to Vibrio cholerae hypothetical protein Vca0110 TR:Q9KN55 (EMBL:AE004353) (589 aa) fasta scores: E(): 0%2C 45.7%25 id in 350 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE005198;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	4138983	4139423	.	-	.	ID=gene3651;Name=YPO3705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3705
AL590842.1	EMBL	CDS	4138983	4139423	.	-	0	ID=cds3601;Parent=gene3651;Dbxref=GOA:Q7CLD2,InterPro:IPR007048,InterPro:IPR015801,InterPro:IPR017737,UniProtKB/TrEMBL:Q7CLD2,NCBI_GP:CAL22292.1;Name=CAL22292.1;Note=Similar to Vibrio cholerae hypothetical protein VCA0109 TR:Q9KN56 (EMBL:AE004353) (145 aa) fasta scores: E(): 4.2e-13%2C 36.7%25 id in 128 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA1659 TR:AAG05048 (EMBL:AE004593) (135 aa) fasta scores: E(): 5.6e-08%2C 33.9%25 id in 124 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004593;product=conserved hypothetical protein;protein_id=CAL22292.1;transl_table=11
AL590842.1	EMBL	gene	4139430	4140911	.	-	.	ID=gene3652;Name=YPO3706;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3706
AL590842.1	EMBL	CDS	4139430	4140911	.	-	0	ID=cds3602;Parent=gene3652;Dbxref=InterPro:IPR010269,UniProtKB/TrEMBL:Q7CLD3,NCBI_GP:CAL22293.1;Name=CAL22293.1;Note=Similar to Vibrio cholerae hypothetical protein VCA0108 TR:Q9KN57 (EMBL:AE004353) (492 aa) fasta scores: E(): 0%2C 77.0%25 id in 473 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA1658 TR:AAG05047 (EMBL:AE004593) (491 aa) fasta scores: E(): 0%2C 66.7%25 id in 474 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004593;product=conserved hypothetical protein;protein_id=CAL22293.1;transl_table=11
AL590842.1	EMBL	gene	4140979	4141476	.	-	.	ID=gene3653;Name=YPO3707;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3707
AL590842.1	EMBL	CDS	4140979	4141476	.	-	0	ID=cds3603;Parent=gene3653;Dbxref=InterPro:IPR008312,UniProtKB/TrEMBL:Q0WAV0,NCBI_GP:CAL22294.1;Name=CAL22294.1;Note=Similar to Escherichia coli hypothetical protein 498 TR:O52670 (EMBL:AF044503) (166 aa) fasta scores: E(): 0%2C62.0%25 id in 166 aa%2C and to Vibrio cholerae hypothetical protein VCA0107 TR:Q9KN58 (EMBL:AE004353) (168 aa) fasta scores: E(): 0%2C 61.3%25 id in 160 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF044503;product=conserved hypothetical protein;protein_id=CAL22294.1;transl_table=11
AL590842.1	EMBL	gene	4142000	4142518	.	+	.	ID=gene3654;Name=YPO3708;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3708
AL590842.1	EMBL	CDS	4142000	4142518	.	+	0	ID=cds3604;Parent=gene3654;Dbxref=InterPro:IPR008514,UniProtKB/TrEMBL:Q7CLD4,NCBI_GP:CAL22295.1;Name=CAL22295.1;Note=Similar to Escherichia coli hypothetical protein TR:O52671 (EMBL:AF044503) (172 aa) fasta scores: E(): 0%2C80.2%25 id in 172 aa%2C and to Vibrio cholerae secreted hydrophilic protein Hcp or HcpA or VCA0017 or VC1415 TR:P72350 (EMBL:S81006) (172 aa) fasta scores: E(): 0%2C77.3%25 id in 172 aa;gbkey=CDS;inference=similar to sequence:INSDC:S81006;product=conserved hypothetical protein;protein_id=CAL22295.1;transl_table=11
AL590842.1	EMBL	gene	4142670	4143008	.	-	.	ID=gene3655;Name=YPO3709;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3709
AL590842.1	EMBL	CDS	4142670	4143008	.	-	0	ID=cds3605;Parent=gene3655;Dbxref=UniProtKB/TrEMBL:Q0WAU8,NCBI_GP:CAL22296.1;Name=CAL22296.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22296.1;transl_table=11
AL590842.1	EMBL	gene	4143419	4144348	.	-	.	ID=gene3656;Name=malM;gbkey=Gene;gene=malM;gene_biotype=protein_coding;gene_synonym=molA;locus_tag=YPO3710
AL590842.1	EMBL	CDS	4143419	4144348	.	-	0	ID=cds3606;Parent=gene3656;Dbxref=GOA:Q7CLD5,InterPro:IPR010794,UniProtKB/TrEMBL:Q7CLD5,NCBI_GP:CAL22297.1;Name=CAL22297.1;Note=Similar to Escherichia coli maltose operon periplasmic protein precursor MalM or MolA SW:MALM_ECOLI (P03841) (306 aa) fasta scores: E(): 0%2C 51.9%25 id in 308 aa%2Cand to Salmonella typhimurium maltose operon periplasmic protein precursor MalM SW:MALM_SALTY (P26478) (305 aa) fasta scores: E(): 0%2C 51.1%25 id in 307 aa;gbkey=CDS;gene=malM;product=maltose operon periplasmic protein;protein_id=CAL22297.1;transl_table=11
AL590842.1	EMBL	gene	4144571	4145842	.	-	.	ID=gene3657;Name=lamB;gbkey=Gene;gene=lamB;gene_biotype=protein_coding;gene_synonym=malB;locus_tag=YPO3711
AL590842.1	EMBL	CDS	4144571	4145842	.	-	0	ID=cds3607;Parent=gene3657;Dbxref=GOA:Q8ZAS9,InterPro:IPR003192,InterPro:IPR023738,NCBI_GP:CAL22298.1;Name=CAL22298.1;Note=Similar to Escherichia coli maltoporin precursor LamB or MalB SW:LAMB_ECOLI (P02943) (446 aa) fasta scores: E(): 0%2C 72.4%25 id in 446 aa%2C and to Yersinia enterocolitica maltoporin LamB SW:LAMB_YEREN (Q56850) (400 aa) fasta scores: E(): 0%2C 87.7%25 id in 399 aa;gbkey=CDS;gene=lamB;product=maltoporin;protein_id=CAL22298.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4144574	4145764	.	-	.	ID=id8844;Note=Pfam match to entry PF02264 LamB%2C LamB porin%2C score 750.70%2C E-value 6.1e-222;gbkey=misc_feature;gene=lamB;inference=protein motif:PF02264
AL590842.1	EMBL	gene	4145913	4147022	.	-	.	ID=gene3658;Name=malK;gbkey=Gene;gene=malK;gene_biotype=protein_coding;locus_tag=YPO3712
AL590842.1	EMBL	CDS	4145913	4147022	.	-	0	ID=cds3608;Parent=gene3658;Dbxref=GOA:Q8ZAS8,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR008995,InterPro:IPR012340,InterPro:IPR013611,InterPro:IPR015855,InterPro:IPR017871,InterPro:IPR027417,NCBI_GP:CAL22299.1;Name=CAL22299.1;Note=Similar to Escherichia coli maltose/maltodextrin transport ATP-binding protein MalK SW:MALK_ECOLI (P02914) (371 aa) fasta scores: E(): 0%2C 84.6%25 id in 371 aa%2C and to Salmonella typhimurium maltose/maltodextrin transport ATP-binding protein MalK SW:MALK_SALTY (P19566) (369 aa) fasta scores: E(): 0%2C 84.3%25 id in 369 aa. Similar to YPO0857 (52.7%25 identity in 357 aa overlap)%2C YPO3793 (47.5%25 identity in 358 aa overlap)%2C YPO1896 (59.6%25 identity in 275 aa overlap)%2C YPO0609 (47.7%25 identity in 369 aa overlap)%2CYPO3469 ( 49.9%25 identity in 357 aa overlap);gbkey=CDS;gene=malK;product=maltose/maltodextrin transport ATP-binding protein;protein_id=CAL22299.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4146393	4146938	.	-	.	ID=id8845;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 232.60%2C E-value 5.7e-66;gbkey=misc_feature;gene=malK;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	4146579	4146623	.	-	.	ID=id8846;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=malK;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	4146894	4146917	.	-	.	ID=id8847;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=malK;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4147026	4147262	.	-	.	ID=gene3659;Name=YPO3713;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3713
AL590842.1	EMBL	CDS	4147026	4147262	.	-	0	ID=cds3609;Parent=gene3659;Dbxref=UniProtKB/TrEMBL:Q7CLD7,NCBI_GP:CAL22300.1;Name=CAL22300.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22300.1;transl_table=11
AL590842.1	EMBL	gene	4147824	4149035	.	+	.	ID=gene3660;Name=malE;gbkey=Gene;gene=malE;gene_biotype=protein_coding;locus_tag=YPO3714
AL590842.1	EMBL	CDS	4147824	4149035	.	+	0	ID=cds3610;Parent=gene3660;Dbxref=GOA:Q7CLD8,InterPro:IPR006059,InterPro:IPR006060,InterPro:IPR006061,UniProtKB/TrEMBL:Q7CLD8,NCBI_GP:CAL22301.1;Name=CAL22301.1;Note=Similar to Escherichia coli maltose-binding periplasmic protein precursor MalE SW:MALE_ECOLI (P02928) (396 aa) fasta scores: E(): 0%2C 84.6%25 id in 390 aa%2C and to Salmonella typhimurium maltose-binding periplasmic protein precursor MalE SW:MALE_SALTY (P19576) (396 aa) fasta scores: E(): 0%2C 83.4%25 id in 397 aa;gbkey=CDS;gene=malE;product=maltose-binding periplasmic protein precursor;protein_id=CAL22301.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4148220	4149032	.	+	.	ID=id8848;Note=Pfam match to entry PF01547 SBP_bacterial_1%2CBacterial extracellular solute-binding protein%2C score 139.00%2C E-value 5.4e-38;gbkey=misc_feature;gene=malE;inference=protein motif:PF01547
AL590842.1	EMBL	sequence_feature	4148241	4148294	.	+	.	ID=id8849;Note=PS01037 Bacterial extracellular solute-binding proteins%2C family 1 signature.;gbkey=misc_feature;gene=malE;inference=protein motif:ProSite:PS01037
AL590842.1	EMBL	gene	4149222	4150799	.	+	.	ID=gene3661;Name=malF;gbkey=Gene;gene=malF;gene_biotype=protein_coding;locus_tag=YPO3715
AL590842.1	EMBL	CDS	4149222	4150799	.	+	0	ID=cds3611;Parent=gene3661;Dbxref=GOA:Q74RF9,InterPro:IPR000515,InterPro:IPR029345,NCBI_GP:CAL22302.1;Name=CAL22302.1;Note=Similar to Escherichia coli maltose transport system permease protein MalF SW:MALF_ECOLI (P02916) (514 aa) fasta scores: E(): 0%2C 75.4%25 id in 513 aa%2C and to Enterobacter aerogenes maltose transport system permease protein MalF SW:MALF_ENTAE (P18812) (514 aa) fasta scores: E(): 0%2C 75.2%25 id in 513 aa;gbkey=CDS;gene=malF;inference=protein motif:TMHMM:2.0;product=maltose transport system permease protein MalF;protein_id=CAL22302.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4149285	4149353	.	+	.	ID=id8850;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=malF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4149363	4149416	.	+	.	ID=id8851;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=malF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4149453	4149521	.	+	.	ID=id8852;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=malF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4150092	4150160	.	+	.	ID=id8853;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=malF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4150197	4150262	.	+	.	ID=id8854;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=malF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4150362	4150430	.	+	.	ID=id8855;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=malF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4150425	4150670	.	+	.	ID=id8856;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 67.40%2C E-value 3e-16;gbkey=misc_feature;gene=malF;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	4150428	4150514	.	+	.	ID=id8857;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;gene=malF;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	4150491	4150559	.	+	.	ID=id8858;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=malF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4150704	4150772	.	+	.	ID=id8859;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=malF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4150813	4151703	.	+	.	ID=gene3662;Name=malG;gbkey=Gene;gene=malG;gene_biotype=protein_coding;locus_tag=YPO3716
AL590842.1	EMBL	CDS	4150813	4151703	.	+	0	ID=cds3612;Parent=gene3662;Dbxref=GOA:Q74RF8,InterPro:IPR000515,NCBI_GP:CAL22303.1;Name=CAL22303.1;Note=Similar to Escherichia coli maltose transport system permease protein MalG SW:MALG_ECOLI (P07622) (296 aa) fasta scores: E(): 0%2C 88.2%25 id in 296 aa%2C and to Salmonella typhimurium maltose transport system permease protein MalG SW:MALG_SALTY (P26468) (296 aa) fasta scores: E(): 0%2C 90.9%25 id in 296 aa;gbkey=CDS;gene=malG;inference=protein motif:TMHMM:2.0;product=maltose transport system permease protein MalG;protein_id=CAL22303.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4150849	4150917	.	+	.	ID=id8860;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=malG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4151077	4151145	.	+	.	ID=id8861;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=malG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4151182	4151241	.	+	.	ID=id8862;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=malG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4151269	4151337	.	+	.	ID=id8863;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=malG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4151350	4151574	.	+	.	ID=id8864;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 63.00%2C E-value 6.5e-15;gbkey=misc_feature;gene=malG;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	4151353	4151439	.	+	.	ID=id8865;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;gene=malG;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	4151425	4151493	.	+	.	ID=id8866;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=malG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4151587	4151655	.	+	.	ID=id8867;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=malG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4151846	4152253	.	-	.	ID=gene3663;Name=yjbA;gbkey=Gene;gene=yjbA;gene_biotype=protein_coding;locus_tag=YPO3717
AL590842.1	EMBL	CDS	4151846	4152253	.	-	0	ID=cds3613;Parent=gene3663;Dbxref=GOA:Q8ZAS3,InterPro:IPR009315,InterPro:IPR020948,NCBI_GP:CAL22304.1;Name=CAL22304.1;Note=Similar to Escherichia coli hypothetical 15.6 kDa protein in pgi-xylE intergenic region YjbA SW:YJBA_ECOLI (P23896) (136 aa) fasta scores: E(): 0%2C 67.7%25 id in 130 aa%2Cand to Salmonella typhimurium Mig-7 TR:O30901 (EMBL:AF020807) (136 aa) fasta scores: E(): 0%2C 66.4%25 id in 131 aa;gbkey=CDS;gene=yjbA;inference=similar to sequence:INSDC:AF020807;product=putative membrane protein;protein_id=CAL22304.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4151870	4151920	.	-	.	ID=id8868;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjbA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4151951	4152001	.	-	.	ID=id8869;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjbA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4152023	4152088	.	-	.	ID=id8870;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjbA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4152134	4152199	.	-	.	ID=id8871;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=yjbA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4152388	4154034	.	-	.	ID=gene3664;Name=pgi;gbkey=Gene;gene=pgi;gene_biotype=protein_coding;locus_tag=YPO3718
AL590842.1	EMBL	CDS	4152388	4154034	.	-	0	ID=cds3614;Parent=gene3664;Dbxref=GOA:Q8ZAS2,InterPro:IPR001672,InterPro:IPR018189,InterPro:IPR023096,NCBI_GP:CAL22305.1;Name=CAL22305.1;Note=Similar to Escherichia coli glucose-6-phosphate isomerase Pgi SW:G6PI_ECOLI (P11537) (549 aa) fasta scores: E(): 0%2C 87.2%25 id in 548 aa%2C and to Vibrio cholerae glucose-6-phosphate isomerase Vc0374 TR:Q9KUY4 (EMBL:AE004125) (550 aa) fasta scores: E(): 0%2C 76.5%25 id in 548 aa;gbkey=CDS;gene=pgi;inference=similar to sequence:INSDC:AE004125;product=glucose-6-phosphate isomerase;protein_id=CAL22305.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4152412	4153881	.	-	.	ID=id8872;Note=Pfam match to entry PF00342 PGI%2C Phosphoglucose isomerase%2C score 1102.80%2C E-value 0;gbkey=misc_feature;gene=pgi;inference=protein motif:PF00342
AL590842.1	EMBL	sequence_feature	4152493	4152546	.	-	.	ID=id8873;Note=PS00174 Phosphoglucose isomerase signature 2.;gbkey=misc_feature;gene=pgi;inference=protein motif:ProSite:PS00174
AL590842.1	EMBL	sequence_feature	4153201	4153242	.	-	.	ID=id8874;Note=PS00765 Phosphoglucose isomerase signature 1.;gbkey=misc_feature;gene=pgi;inference=protein motif:ProSite:PS00765
AL590842.1	EMBL	gene	4154404	4155789	.	+	.	ID=gene3665;Name=apk;gbkey=Gene;gene=apk;gene_biotype=protein_coding;gene_synonym=lysC;locus_tag=YPO3719
AL590842.1	EMBL	CDS	4154404	4155789	.	+	0	ID=cds3615;Parent=gene3665;Dbxref=GOA:Q7CLD9,InterPro:IPR001048,InterPro:IPR001341,InterPro:IPR002912,InterPro:IPR005260,InterPro:IPR018042,UniProtKB/TrEMBL:Q7CLD9,NCBI_GP:CAL22306.1;Name=CAL22306.1;Note=Similar to Escherichia coli lysine-sensitive aspartokinase III LysC or Apk SW:AK3_ECOLI (P08660) (449 aa) fasta scores: E(): 0%2C 81.5%25 id in 448 aa%2C and to Vibrio cholerae aspartokinase III%2C lysine-sensitive Vc0391 TR:Q9KUW8 (EMBL:AE004127) (479 aa) fasta scores: E(): 0%2C55.2%25 id in 453 aa;gbkey=CDS;gene=apk;inference=similar to sequence:INSDC:AE004127;product=lysine-sensitive aspartokinase III;protein_id=CAL22306.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4154446	4155186	.	+	.	ID=id8875;Note=Pfam match to entry PF00696 aakinase%2C Amino acid kinase family%2C score 166.70%2C E-value 4e-46;gbkey=misc_feature;gene=apk;inference=protein motif:PF00696
AL590842.1	EMBL	sequence_feature	4154455	4154481	.	+	.	ID=id8876;Note=PS00324 Aspartokinase signature.;gbkey=misc_feature;gene=apk;inference=protein motif:ProSite:PS00324
AL590842.1	EMBL	gene	4156357	4158042	.	+	.	ID=gene3666;Name=hpmB;gbkey=Gene;gene=hpmB;gene_biotype=protein_coding;gene_synonym=shlB;locus_tag=YPO3720
AL590842.1	EMBL	CDS	4156357	4158042	.	+	0	ID=cds3616;Parent=gene3666;Dbxref=GOA:Q0WAT7,InterPro:IPR005565,InterPro:IPR013686,InterPro:IPR027282,UniProtKB/TrEMBL:Q0WAT7,NCBI_GP:CAL22307.1;Name=CAL22307.1;Note=Similar to Serratia marcescens hemolysin activator protein precursor ShlB SW:HLYB_SERMA (P15321) (557 aa) fasta scores: E(): 0%2C 54.2%25 id in 565 aa%2C and to Proteus mirabilis hemolysin activator protein precursor HpmB SW:HLYB_PROMI (P16465) (561 aa) fasta scores: E(): 0%2C 49.0%25 id in 571 aa;gbkey=CDS;gene=hpmB;product=hemolysin activator protein;protein_id=CAL22307.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4156357	4156410	.	+	.	ID=id8877;Note=Predicted N-terminal signal sequence (probabilty 1.000) with cleavage site between residues 18 and 19;gbkey=misc_feature;gene=hpmB
AL590842.1	EMBL	gene	4158112	4163019	.	+	.	ID=gene3667;Name=YPO3721;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3721
AL590842.1	EMBL	CDS	4158112	4163019	.	+	0	ID=cds3617;Parent=gene3667;Dbxref=InterPro:IPR008638,InterPro:IPR011050,InterPro:IPR012334,InterPro:IPR025157,UniProtKB/TrEMBL:Q0WAT6,NCBI_GP:CAL22308.1;Name=CAL22308.1;Note=Similar to Serratia marcescens hemolysin precursor ShlA SW:HLYA_SERMA (P15320) (1608 aa) fasta scores: E(): 0%2C42.5%25 id in 1657 aa%2C and to Edwardsiella tarda hemolysin EthA TR:O32608 (EMBL:D89876) (1594 aa) fasta scores: E(): 0%2C 36.4%25 id in 1660 aa;gbkey=CDS;inference=similar to sequence:INSDC:D89876;product=hemolysin;protein_id=CAL22308.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4161715	4161738	.	+	.	ID=id8878;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4163115	4166810	.	-	.	ID=gene3668;Name=metH;gbkey=Gene;gene=metH;gene_biotype=protein_coding;locus_tag=YPO3722
AL590842.1	EMBL	CDS	4163115	4166810	.	-	0	ID=cds3618;Parent=gene3668;Dbxref=GOA:Q7CLE0,InterPro:IPR000489,InterPro:IPR003726,InterPro:IPR003759,InterPro:IPR004223,InterPro:IPR006158,InterPro:IPR011005,InterPro:IPR011822,UniProtKB/TrEMBL:Q7CLE0,NCBI_GP:CAL22309.1;Name=CAL22309.1;Note=Similar to Escherichia coli 5-methyltetrahydrofolate--homocysteine methyltransferase MetH SW:METH_ECOLI (P13009) (1226 aa) fasta scores: E(): 0%2C86.0%25 id in 1225 aa%2C and to Vibrio cholerae 5-methyltetrahydrofolate--homocysteine methyltransferase VC0390 TR:Q9KUW9 (EMBL:AE004127) (1226 aa) fasta scores: E(): 0%2C 75.9%25 id in 1218 aa;gbkey=CDS;gene=metH;inference=similar to sequence:INSDC:AE004127;product=5-Methyltetrahydrofolate--homocysteine methyltransferase;protein_id=CAL22309.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4164204	4164560	.	-	.	ID=id8879;Note=Pfam match to entry PF02310 B12-binding%2C %2C score 176.20%2C E-value 5.5e-49;gbkey=misc_feature;gene=metH;inference=protein motif:PF02310
AL590842.1	EMBL	pseudogene	4167025	4167869	.	+	.	ID=gene3669;Name=iclR;gbkey=Gene;gene=iclR;gene_biotype=pseudogene;locus_tag=YPO3723;pseudo=true
AL590842.1	EMBL	CDS	4167025	4167869	.	+	0	ID=cds3619;Parent=gene3669;Note=Similar to Escherichia coli acetate operon repressor IclR SW:ICLR_ECOLI (P16528) (274 aa) fasta scores: E(): 0%2C78.5%25 id in 275 aa%2C and to Salmonella typhimurium acetate operon repressor IclR SW:ICLR_SALTY (P17430) (274 aa) fasta scores: E(): 0%2C 74.9%25 id in 275 aa. There is a frameshift following codon 89. The frameshift occurs within tracts of 5C and 5G. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=iclR;product=acetate operon repressor (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	4167288	4167842	.	+	.	ID=id8880;Note=Pfam match to entry PF01614 IclR%2C Bacterial transcriptional regulator%2C score 247.60%2C E-value 1.7e-70;gbkey=misc_feature;gene=iclR;inference=protein motif:PF01614
AL590842.1	EMBL	sequence_feature	4167657	4167722	.	+	.	ID=id8881;Note=PS01051 Bacterial regulatory proteins%2C iclR family signature.;gbkey=misc_feature;gene=iclR;inference=protein motif:ProSite:PS01051
AL590842.1	EMBL	gene	4167989	4169716	.	-	.	ID=gene3670;Name=aceK;gbkey=Gene;gene=aceK;gene_biotype=protein_coding;locus_tag=YPO3724
AL590842.1	EMBL	CDS	4167989	4169716	.	-	0	ID=cds3620;Parent=gene3670;Dbxref=GOA:Q8ZAR7,InterPro:IPR010452,NCBI_GP:CAL22311.1;Name=CAL22311.1;Note=Similar to Escherichia coli isocitrate dehydrogenase kinase/phosphatase AceK SW:ACEK_ECOLI (P11071) (578 aa) fasta scores: E(): 0%2C 75.5%25 id in 568 aa%2C and to Salmonella typhimurium isocitrate dehydrogenase kinase/phosphatase AceK SW:ACEK_SALTY (P51067) (583 aa) fasta scores: E(): 0%2C75.2%25 id in 568 aa;gbkey=CDS;gene=aceK;product=isocitrate dehydrogenase kinase/phosphatase;protein_id=CAL22311.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4168832	4168855	.	-	.	ID=id8882;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=aceK;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	4168925	4169011	.	-	.	ID=id8883;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;gene=aceK;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	gene	4169972	4171279	.	-	.	ID=gene3671;Name=aceA;gbkey=Gene;gene=aceA;gene_biotype=protein_coding;gene_synonym=icl;locus_tag=YPO3725
AL590842.1	EMBL	CDS	4169972	4171279	.	-	0	ID=cds3621;Parent=gene3671;Dbxref=GOA:Q7CLE1,InterPro:IPR006254,InterPro:IPR015813,InterPro:IPR018523,PDB:3LG3,UniProtKB/TrEMBL:Q7CLE1,NCBI_GP:CAL22312.1;Name=CAL22312.1;Note=Similar to Escherichia coli isocitrate lyase AceA or Icl SW:ACEA_ECOLI (P05313) (434 aa) fasta scores: E(): 0%2C85.2%25 id in 432 aa%2C and to Vibrio cholerae isocitrate lyase Vc0736 TR:Q9KTZ4 (EMBL:AE004159) (437 aa) fasta scores: E(): 0%2C 76.8%25 id in 436 aa;gbkey=CDS;gene=aceA;inference=similar to sequence:INSDC:AE004159;product=isocitrate lyase;protein_id=CAL22312.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4169975	4170508	.	-	.	ID=id8884;Note=Pfam match to entry PF00463 ICL%2C Isocitrate lyase%2Cscore 393.00%2C E-value 2e-154;gbkey=misc_feature;gene=aceA;inference=protein motif:PF00463
AL590842.1	EMBL	sequence_feature	4170431	4170454	.	-	.	ID=id8885;Note=PS00030 Eukaryotic putative RNA-binding region RNP-1 signature.;gbkey=misc_feature;gene=aceA;inference=protein motif:ProSite:PS00030
AL590842.1	EMBL	sequence_feature	4170512	4171258	.	-	.	ID=id8886;Note=Pfam match to entry PF00463 ICL%2C Isocitrate lyase%2Cscore 532.50%2C E-value 3.8e-209;gbkey=misc_feature;gene=aceA;inference=protein motif:PF00463
AL590842.1	EMBL	sequence_feature	4170683	4170700	.	-	.	ID=id8887;Note=PS00161 Isocitrate lyase signature.;gbkey=misc_feature;gene=aceA;inference=protein motif:ProSite:PS00161
AL590842.1	EMBL	gene	4171326	4172924	.	-	.	ID=gene3672;Name=aceB;gbkey=Gene;gene=aceB;gene_biotype=protein_coding;gene_synonym=mas;locus_tag=YPO3726
AL590842.1	EMBL	CDS	4171326	4172924	.	-	0	ID=cds3622;Parent=gene3672;Dbxref=GOA:Q0WAT2,InterPro:IPR001465,InterPro:IPR006252,InterPro:IPR011076,UniProtKB/TrEMBL:Q0WAT2,NCBI_GP:CAL22313.1;Name=CAL22313.1;Note=Similar to Escherichia coli malate synthase A AceB or Mas SW:MASY_ECOLI (P08997) (533 aa) fasta scores: E(): 0%2C 79.5%25 id in 533 aa%2C and to Vibrio cholerae malate synthase Vc0734 TR:Q9KTZ6 (EMBL:AE004159) (556 aa) fasta scores: E(): 0%2C 71.4%25 id in 524 aa;gbkey=CDS;gene=aceB;inference=similar to sequence:INSDC:AE004159;product=malate synthase A;protein_id=CAL22313.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4171329	4172903	.	-	.	ID=id8888;Note=Pfam match to entry PF01274 Malate_synthase%2C Malate synthase%2C score 1200.20%2C E-value 0;gbkey=misc_feature;gene=aceB;inference=protein motif:PF01274
AL590842.1	EMBL	sequence_feature	4171539	4171604	.	-	.	ID=id8889;Note=Predicted helix-turn-helix motif with score 1042 (+2.74 SD) at aa 452-473%2C sequence YGLMEDAATAEISRTSIWQWIH;gbkey=misc_feature;gene=aceB
AL590842.1	EMBL	gene	4173345	4174274	.	-	.	ID=gene3673;Name=metA;gbkey=Gene;gene=metA;gene_biotype=protein_coding;locus_tag=YPO3727
AL590842.1	EMBL	CDS	4173345	4174274	.	-	0	ID=cds3623;Parent=gene3673;Dbxref=GOA:Q8ZAR4,InterPro:IPR005697,InterPro:IPR029062,NCBI_GP:CAL22314.1;Name=CAL22314.1;Note=Similar to Escherichia coli homoserine O-succinyltransferase MetA SW:META_ECOLI (P07623) (309 aa) fasta scores: E(): 0%2C 79.3%25 id in 309 aa%2C and to Vibrio cholerae homoserine O-succinyltransferase MetA or Vc1611 TR:Q9KRM5 (EMBL:AE004238) (319 aa) fasta scores: E(): 0%2C68.5%25 id in 305 aa;gbkey=CDS;gene=metA;inference=similar to sequence:INSDC:AE004238;product=homoserine O-succinyltransferase;protein_id=CAL22314.1;transl_table=11
AL590842.1	EMBL	gene	4175006	4175140	.	-	.	ID=gene3674;Name=5S_rRNA;gbkey=Gene;gene=5S_rRNA;gene_biotype=rRNA
AL590842.1	EMBL	rRNA	4175006	4175140	.	-	.	ID=rna79;Parent=gene3674;Note=partial 5SrRNA lacking the first 100 bases.;gbkey=rRNA;gene=5S_rRNA
AL590842.1	EMBL	exon	4175006	4175140	.	-	.	ID=id8890;Parent=rna79;Note=partial 5SrRNA lacking the first 100 bases.;gbkey=rRNA;gene=5S_rRNA
AL590842.1	EMBL	tRNA	4175170	4175245	.	-	.	ID=rna80;Note=tRNA Thr anticodon GGT%2C Cove score 88.70;gbkey=tRNA;product=tRNA-Thr
AL590842.1	EMBL	exon	4175170	4175245	.	-	.	ID=id8891;Parent=rna80;Note=tRNA Thr anticodon GGT%2C Cove score 88.70;gbkey=tRNA;product=tRNA-Thr
AL590842.1	EMBL	gene	4175254	4175486	.	-	.	ID=gene3675;Name=5S_rRNA;gbkey=Gene;gene=5S_rRNA;gene_biotype=rRNA
AL590842.1	EMBL	rRNA	4175254	4175486	.	-	.	ID=rna81;Parent=gene3675;Note=match to 5SrRNA 1..233 blast score 1144 percent identity 99 (incl. 23S-5S spacer);gbkey=rRNA;gene=5S_rRNA
AL590842.1	EMBL	exon	4175254	4175486	.	-	.	ID=id8892;Parent=rna81;Note=match to 5SrRNA 1..233 blast score 1144 percent identity 99 (incl. 23S-5S spacer);gbkey=rRNA;gene=5S_rRNA
AL590842.1	EMBL	gene	4175486	4178392	.	-	.	ID=gene3676;Name=23S_rRNA;gbkey=Gene;gene=23S_rRNA;gene_biotype=rRNA
AL590842.1	EMBL	rRNA	4175486	4178392	.	-	.	ID=rna82;Parent=gene3676;Note=match to 23S_rRNA 1..2906 (Y. enterocolitica 23S EMBL:U77925);gbkey=rRNA;gene=23S_rRNA
AL590842.1	EMBL	exon	4175486	4178392	.	-	.	ID=id8893;Parent=rna82;Note=match to 23S_rRNA 1..2906 (Y. enterocolitica 23S EMBL:U77925);gbkey=rRNA;gene=23S_rRNA
AL590842.1	EMBL	tRNA	4178611	4178686	.	-	.	ID=rna83;Note=tRNA Ala anticodon TGC%2C Cove score 93.97;gbkey=tRNA;product=tRNA-Ala
AL590842.1	EMBL	exon	4178611	4178686	.	-	.	ID=id8894;Parent=rna83;Note=tRNA Ala anticodon TGC%2C Cove score 93.97;gbkey=tRNA;product=tRNA-Ala
AL590842.1	EMBL	tRNA	4178738	4178814	.	-	.	ID=rna84;Note=tRNA Ile anticodon GAT%2C Cove score 94.77;gbkey=tRNA;product=tRNA-Ile
AL590842.1	EMBL	exon	4178738	4178814	.	-	.	ID=id8895;Parent=rna84;Note=tRNA Ile anticodon GAT%2C Cove score 94.77;gbkey=tRNA;product=tRNA-Ile
AL590842.1	EMBL	gene	4178944	4180432	.	-	.	ID=gene3677;Name=16S_rRNA;gbkey=Gene;gene=16S_rRNA;gene_biotype=rRNA
AL590842.1	EMBL	rRNA	4178944	4180432	.	-	.	ID=rna85;Parent=gene3677;Note=match to 16S_rRNA 1..1489 (EMBL:YPE16SA);gbkey=rRNA;gene=16S_rRNA
AL590842.1	EMBL	exon	4178944	4180432	.	-	.	ID=id8896;Parent=rna85;Note=match to 16S_rRNA 1..1489 (EMBL:YPE16SA);gbkey=rRNA;gene=16S_rRNA
AL590842.1	EMBL	gene	4181118	4182707	.	+	.	ID=gene3678;Name=purH;gbkey=Gene;gene=purH;gene_biotype=protein_coding;locus_tag=YPO3728
AL590842.1	EMBL	CDS	4181118	4182707	.	+	0	ID=cds3624;Parent=gene3678;Dbxref=GOA:Q8ZAR3,InterPro:IPR002695,InterPro:IPR011607,InterPro:IPR016193,InterPro:IPR024051,NCBI_GP:CAL22315.1;Name=CAL22315.1;Note=Similar to Escherichia coli bifunctional purine biosynthesis protein PurH SW:PUR9_ECOLI (P15639) (529 aa) fasta scores: E(): 0%2C 87.1%25 id in 529 aa%2C and to Salmonella typhimurium bifunctional purine biosynthesis protein PurH SW:PUR9_SALTY (P26978) (508 aa) fasta scores: E(): 0%2C 86.8%25 id in 508 aa;gbkey=CDS;gene=purH;product=bifunctional purine biosynthesis protein PurH [includes: phosphoribosylaminoimidazolecarboxamide formyltransferase and IMP cyclohydrolase;protein_id=CAL22315.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4181145	4181513	.	+	.	ID=id8897;Note=Pfam match to entry PF02142 MGS%2C Methylglyoxal synthase%2C score 198.40%2C E-value 1.1e-55;gbkey=misc_feature;gene=purH;inference=protein motif:PF02142
AL590842.1	EMBL	sequence_feature	4181526	4182500	.	+	.	ID=id8898;Note=Pfam match to entry PF01808 AICARFT_IMPCHas%2CAICARFT/IMPCHase bienzyme%2C score 683.80%2C E-value 8.2e-202;gbkey=misc_feature;gene=purH;inference=protein motif:PF01808
AL590842.1	EMBL	gene	4182767	4184053	.	+	.	ID=gene3679;Name=purD;gbkey=Gene;gene=purD;gene_biotype=protein_coding;locus_tag=YPO3729
AL590842.1	EMBL	CDS	4182767	4184053	.	+	0	ID=cds3625;Parent=gene3679;Dbxref=GOA:Q8ZAR2,InterPro:IPR000115,InterPro:IPR011054,InterPro:IPR011761,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016185,InterPro:IPR020559,InterPro:IPR020560,InterPro:IPR020561,InterPro:IPR020562,PDB:3MJF,NCBI_GP:CAL22316.1;Name=CAL22316.1;Note=Similar to Escherichia coli phosphoribosylamine--glycine ligase PurD SW:PUR2_ECOLI (P15640) (429 aa) fasta scores: E(): 0%2C 80.8%25 id in 426 aa%2Cand to Salmonella typhimurium phosphoribosylamine--glycine ligase PurD or Stmf1.31 SW:PUR2_SALTY (P26977) (429 aa) fasta scores: E(): 0%2C 79.6%25 id in 426 aa;gbkey=CDS;gene=purD;product=phosphoribosylamine--glycine ligase;protein_id=CAL22316.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4182767	4184038	.	+	.	ID=id8899;Note=Pfam match to entry PF01071 GARS%2CPhosphoribosylglycinamide synthetase (GARS)%2C score 916.90%2CE-value 5.6e-272;gbkey=misc_feature;gene=purD;inference=protein motif:PF01071
AL590842.1	EMBL	sequence_feature	4183634	4183657	.	+	.	ID=id8900;Note=PS00184 Phosphoribosylglycinamide synthetase signature.;gbkey=misc_feature;gene=purD;inference=protein motif:ProSite:PS00184
AL590842.1	EMBL	gene	4184201	4184902	.	-	.	ID=gene3680;Name=yjaH;gbkey=Gene;gene=yjaH;gene_biotype=protein_coding;locus_tag=YPO3730
AL590842.1	EMBL	CDS	4184201	4184902	.	-	0	ID=cds3626;Parent=gene3680;Dbxref=InterPro:IPR010858,InterPro:IPR016500,UniProtKB/TrEMBL:Q7CKT3,NCBI_GP:CAL22317.1;Name=CAL22317.1;Note=Similar to Escherichia coli hypothetical 26.3 kDa protein in hupA-hydH intergenic region YjaH SW:YJAH_ECOLI (P32681) (231 aa) fasta scores: E(): 7.8e-32%2C 40.9%25 id in 225 aa%2C and to Salmonella typhimurium LT2 YjaH protein TR:Q9L9I1 (EMBL:AF170176) (230 aa) fasta scores: E(): 0%2C42.0%25 id in 226 aa;gbkey=CDS;gene=yjaH;inference=similar to sequence:INSDC:AF170176;product=putative exported protein;protein_id=CAL22317.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4184804	4184836	.	-	.	ID=id8901;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=yjaH;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	4184904	4185179	.	-	.	ID=gene3681;Name=hupA;gbkey=Gene;gene=hupA;gene_biotype=protein_coding;locus_tag=YPO3731
AL590842.1	EMBL	CDS	4184904	4185179	.	-	0	ID=cds3627;Parent=gene3681;Dbxref=GOA:Q7CKT4,InterPro:IPR000119,InterPro:IPR010992,InterPro:IPR020816,UniProtKB/TrEMBL:Q7CKT4,NCBI_GP:CAL22318.1;Name=CAL22318.1;Note=Similar to Escherichia coli DNA-binding protein HU-alpha HupA SW:DBHA_ECOLI (P02342) (90 aa) fasta scores: E(): 3.5e-29%2C 94.4%25 id in 90 aa%2C and to Salmonella typhimurium DNA-binding protein HU-alpha HupA or Stmf1.24 SW:DBHA_SALTY (P15148) (90 aa) fasta scores: E(): 1.4e-29%2C95.6%25 id in 90 aa. Similar to YPO3154 (65.2%25 identity in 89 aa overlap);gbkey=CDS;gene=hupA;product=DNA-binding protein HU-alpha;protein_id=CAL22318.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4184910	4185179	.	-	.	ID=id8902;Note=Pfam match to entry PF00216 Bac_DNA_binding%2CBacterial DNA-binding protein%2C score 181.20%2C E-value 4.4e-51;gbkey=misc_feature;gene=hupA;inference=protein motif:PF00216
AL590842.1	EMBL	sequence_feature	4184985	4185044	.	-	.	ID=id8903;Note=PS00045 Bacterial histone-like DNA-binding proteins signature.;gbkey=misc_feature;gene=hupA;inference=protein motif:ProSite:PS00045
AL590842.1	EMBL	gene	4185368	4185958	.	-	.	ID=gene3682;Name=YPO3732;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3732
AL590842.1	EMBL	CDS	4185368	4185958	.	-	0	ID=cds3628;Parent=gene3682;Dbxref=InterPro:IPR007338,InterPro:IPR023381,UniProtKB/TrEMBL:Q7CKT5,NCBI_GP:CAL22319.1;Name=CAL22319.1;Note=Similar to Escherichia coli hypothetical protein YjaG SW:YJAG_ECOLI (P32680) (196 aa) fasta scores: E(): 0%2C78.6%25 id in 196 aa%2C and to Salmonella typhimurium LT2 YjaG protein TR:Q9L9I2 (EMBL:AF170176) (196 aa) fasta scores: E(): 0%2C 80.1%25 id in 196 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF170176;product=conserved hypothetical protein;protein_id=CAL22319.1;transl_table=11
AL590842.1	EMBL	gene	4186004	4186708	.	-	.	ID=gene3683;Name=nfi;gbkey=Gene;gene=nfi;gene_biotype=protein_coding;locus_tag=YPO3733
AL590842.1	EMBL	CDS	4186004	4186708	.	-	0	ID=cds3629;Parent=gene3683;Dbxref=GOA:Q8ZAQ8,InterPro:IPR007581,NCBI_GP:CAL22320.1;Name=CAL22320.1;Note=Similar to Escherichia coli endonuclease V Nfi SW:NFI_ECOLI (P32679) (223 aa) fasta scores: E(): 0%2C 69.4%25 id in 222 aa%2C and to Salmonella typhimurium LT2 Nfi protein TR:Q9L9I3 (EMBL:AF170176) (223 aa) fasta scores: E(): 0%2C71.0%25 id in 217 aa;gbkey=CDS;gene=nfi;inference=similar to sequence:INSDC:AF170176;product=endonuclease V;protein_id=CAL22320.1;transl_table=11
AL590842.1	EMBL	gene	4186774	4187841	.	-	.	ID=gene3684;Name=hemE;gbkey=Gene;gene=hemE;gene_biotype=protein_coding;locus_tag=YPO3734
AL590842.1	EMBL	CDS	4186774	4187841	.	-	0	ID=cds3630;Parent=gene3684;Dbxref=GOA:Q8ZAQ7,InterPro:IPR000257,InterPro:IPR006361,NCBI_GP:CAL22321.1;Name=CAL22321.1;Note=Similar to Escherichia coli uroporphyrinogen decarboxylase HemE SW:DCUP_ECOLI (P29680) (354 aa) fasta scores: E(): 0%2C 88.4%25 id in 354 aa%2C and to Salmonella typhimurium LT2 HemE protein TR:Q9L9I4 (EMBL:AF170176) (354 aa) fasta scores: E(): 0%2C 89.8%25 id in 353 aa;gbkey=CDS;gene=hemE;inference=similar to sequence:INSDC:AF170176;product=uroporphyrinogen decarboxylase;protein_id=CAL22321.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4186798	4187832	.	-	.	ID=id8904;Note=Pfam match to entry PF01208 URO-D%2C Uroporphyrinogen decarboxylase (URO-D)%2C score 688.10%2C E-value 4.2e-203;gbkey=misc_feature;gene=hemE;inference=protein motif:PF01208
AL590842.1	EMBL	sequence_feature	4187368	4187415	.	-	.	ID=id8905;Note=PS00907 Uroporphyrinogen decarboxylase signature 2.;gbkey=misc_feature;gene=hemE;inference=protein motif:ProSite:PS00907
AL590842.1	EMBL	sequence_feature	4187749	4187778	.	-	.	ID=id8906;Note=PS00906 Uroporphyrinogen decarboxylase signature 1.;gbkey=misc_feature;gene=hemE;inference=protein motif:ProSite:PS00906
AL590842.1	EMBL	gene	4187960	4188745	.	-	.	ID=gene3685;Name=YPO3735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3735
AL590842.1	EMBL	CDS	4187960	4188745	.	-	0	ID=cds3631;Parent=gene3685;Dbxref=UniProtKB/TrEMBL:Q7CKT6,NCBI_GP:CAL22322.1;Name=CAL22322.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22322.1;transl_table=11
AL590842.1	EMBL	gene	4188838	4189620	.	-	.	ID=gene3686;Name=YPO3736;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3736
AL590842.1	EMBL	CDS	4188838	4189620	.	-	0	ID=cds3632;Parent=gene3686;Dbxref=GOA:Q8ZAQ5,InterPro:IPR000086,InterPro:IPR015375,InterPro:IPR015376,InterPro:IPR015797,InterPro:IPR020084,InterPro:IPR022925,NCBI_GP:CAL22323.1;Name=CAL22323.1;Note=Similar to Escherichia coli hypothetical protein YjaD SW:YJAD_ECOLI (P32664) (257 aa) fasta scores: E(): 0%2C76.7%25 id in 245 aa%2C and to Salmonella typhimurium hypothetical protein YjaD or STMF1.20 TR:Q9L9I5 (EMBL:AF170176) (257 aa) fasta scores: E(): 0%2C 77.5%25 id in 249 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF170176;product=conserved hypothetical protein;protein_id=CAL22323.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4188880	4189242	.	-	.	ID=id8907;Note=Pfam match to entry PF00293 mutT%2C Bacterial mutT protein%2C score 74.80%2C E-value 1.7e-18;gbkey=misc_feature;inference=protein motif:PF00293
AL590842.1	EMBL	sequence_feature	4189087	4189146	.	-	.	ID=id8908;Note=PS00893 mutT domain signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00893
AL590842.1	EMBL	gene	4189717	4190226	.	+	.	ID=gene3687;Name=rsd;gbkey=Gene;gene=rsd;gene_biotype=protein_coding;locus_tag=YPO3737
AL590842.1	EMBL	CDS	4189717	4190226	.	+	0	ID=cds3633;Parent=gene3687;Dbxref=GOA:Q7CKT7,InterPro:IPR007448,InterPro:IPR023785,NCBI_GP:CAL22324.1;Name=CAL22324.1;Note=Similar to Escherichia coli regulator of sigma D Rsd SW:RSD_ECOLI (P31690) (158 aa) fasta scores: E(): 7.5e-31%2C55.8%25 id in 147 aa%2C and to Salmonella typhimurium LT2 Rsd protein TR:Q9L9I6 (EMBL:AF170176) (162 aa) fasta scores: E(): 3.1e-32%2C 57.1%25 id in 147 aa;gbkey=CDS;gene=rsd;inference=similar to sequence:INSDC:AF170176;product=regulator of sigma D;protein_id=CAL22324.1;transl_table=11
AL590842.1	EMBL	gene	4190349	4190609	.	+	.	ID=gene3688;Name=YPO3738;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3738
AL590842.1	EMBL	CDS	4190349	4190609	.	+	0	ID=cds3634;Parent=gene3688;Dbxref=UniProtKB/TrEMBL:Q74RE4,NCBI_GP:CAL22325.1;Name=CAL22325.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22325.1;transl_table=11
AL590842.1	EMBL	gene	4190602	4192647	.	+	.	ID=gene3689;Name=thiC;gbkey=Gene;gene=thiC;gene_biotype=protein_coding;locus_tag=YPO3739
AL590842.1	EMBL	CDS	4190602	4192647	.	+	0	ID=cds3635;Parent=gene3689;Dbxref=GOA:Q8ZAQ2,InterPro:IPR002817,InterPro:IPR025747,NCBI_GP:CAL22326.1;Name=CAL22326.1;Note=Similar to Escherichia coli thiamine biosynthesis protein ThiC SW:THIC_ECOLI (P30136) (631 aa) fasta scores: E(): 0%2C 83.6%25 id in 646 aa%2C and to Salmonella typhimurium LT2 ThiC protein TR:Q9L9I7 (EMBL:AF170176) (631 aa) fasta scores: E(): 0%2C 81.7%25 id in 644 aa;gbkey=CDS;gene=thiC;inference=similar to sequence:INSDC:AF170176;product=thiamine biosynthesis protein ThiC;protein_id=CAL22326.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4191088	4192440	.	+	.	ID=id8909;Note=Pfam match to entry PF01964 ThiC%2C ThiC family%2C score 1161.00%2C E-value 0;gbkey=misc_feature;gene=thiC;inference=protein motif:PF01964
AL590842.1	EMBL	gene	4192661	4193308	.	+	.	ID=gene3690;Name=thiE;gbkey=Gene;gene=thiE;gene_biotype=protein_coding;locus_tag=YPO3740
AL590842.1	EMBL	CDS	4192661	4193308	.	+	0	ID=cds3636;Parent=gene3690;Dbxref=GOA:Q8ZAQ1,InterPro:IPR003733,InterPro:IPR013785,InterPro:IPR022998,NCBI_GP:CAL22327.1;Name=CAL22327.1;Note=Similar to Escherichia coli thiamine-phosphate pyrophosphorylase ThiE SW:THIE_ECOLI (P30137) (211 aa) fasta scores: E(): 0%2C 71.3%25 id in 202 aa%2C and to Salmonella typhimurium LT2 ThiF protein TR:Q9L9I8 (EMBL:AF170176) (211 aa) fasta scores: E(): 0%2C 71.0%25 id in 200 aa;gbkey=CDS;gene=thiE;inference=similar to sequence:INSDC:AF170176;product=thiamine-phosphate pyrophosphorylase;protein_id=CAL22327.1;transl_table=11
AL590842.1	EMBL	gene	4193298	4194095	.	+	.	ID=gene3691;Name=thiF;gbkey=Gene;gene=thiF;gene_biotype=protein_coding;locus_tag=YPO3741
AL590842.1	EMBL	CDS	4193298	4194095	.	+	0	ID=cds3637;Parent=gene3691;Dbxref=GOA:Q7CKT8,InterPro:IPR000594,InterPro:IPR007901,InterPro:IPR009036,InterPro:IPR016040,UniProtKB/TrEMBL:Q7CKT8,NCBI_GP:CAL22328.1;Name=CAL22328.1;Note=Similar to Escherichia coli ThiF protein SW:THIF_ECOLI (P30138) (251 aa) fasta scores: E(): 0%2C 61.1%25 id in 257 aa%2C and to Salmonella typhimurium LT2 ThiF protein TR:Q9L9I9 (EMBL:AF170176) (252 aa) fasta scores: E(): 0%2C 60.3%25 id in 257 aa;gbkey=CDS;gene=thiF;inference=similar to sequence:INSDC:AF170176;product=thiamine biosynthesis protein ThiF;protein_id=CAL22328.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4193394	4193837	.	+	.	ID=id8910;Note=Pfam match to entry PF00899 ThiF_family%2C ThiF family%2C score 178.40%2C E-value 1.2e-49;gbkey=misc_feature;gene=thiF;inference=protein motif:PF00899
AL590842.1	EMBL	sequence_feature	4193406	4193474	.	+	.	ID=id8911;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=thiF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4194123	4195124	.	+	.	ID=gene3692;Name=thiG;gbkey=Gene;gene=thiG;gene_biotype=protein_coding;locus_tag=YPO3742
AL590842.1	EMBL	CDS	4194123	4195124	.	+	0	ID=cds3638;Parent=gene3692;Dbxref=GOA:Q8ZAP9,InterPro:IPR008867,InterPro:IPR013785,NCBI_GP:CAL22329.1;Name=CAL22329.1;Note=Similar to Escherichia coli ThiG protein SW:THIG_ECOLI (P30139) (281 aa) fasta scores: E(): 0%2C 70.1%25 id in 284 aa%2C and to Vibrio cholerae ThiG protein Vc0065 TR:Q9KVS4 (EMBL:AE004097) (256 aa) fasta scores: E(): 0%2C68.3%25 id in 262 aa;gbkey=CDS;gene=thiG;inference=similar to sequence:INSDC:AE004097;product=thiamine biosynthesis protein ThiG;protein_id=CAL22329.1;transl_table=11
AL590842.1	EMBL	gene	4195117	4196247	.	+	.	ID=gene3693;Name=thiH;gbkey=Gene;gene=thiH;gene_biotype=protein_coding;locus_tag=YPO3743
AL590842.1	EMBL	CDS	4195117	4196247	.	+	0	ID=cds3639;Parent=gene3693;Dbxref=GOA:Q0WAR5,InterPro:IPR007197,InterPro:IPR010722,InterPro:IPR012726,InterPro:IPR013785,UniProtKB/TrEMBL:Q0WAR5,NCBI_GP:CAL22330.1;Name=CAL22330.1;Note=Similar to Escherichia coli ThiH protein SW:THIH_ECOLI (P30140) (377 aa) fasta scores: E(): 0%2C 79.7%25 id in 370 aa%2C and to Salmonella typhimurium and S. typhimurium LT2 ThiH TR:Q9S498 (EMBL:AF154064) (377 aa) fasta scores: E(): 0%2C 78.6%25 id in 370 aa;gbkey=CDS;gene=thiH;inference=similar to sequence:INSDC:AF154064;product=thiamine biosynthesis protein ThiH;protein_id=CAL22330.1;transl_table=11
AL590842.1	EMBL	gene	4196290	4196403	.	-	.	ID=gene3694;Name=YPO3744;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3744
AL590842.1	EMBL	CDS	4196290	4196403	.	-	0	ID=cds3640;Parent=gene3694;Dbxref=UniProtKB/TrEMBL:Q74RE0,NCBI_GP:CAL22331.1;Name=CAL22331.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22331.1;transl_table=11
AL590842.1	EMBL	repeat_region	4196534	4197245	.	+	.	ID=id8912;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	4196679	4197137	.	+	.	ID=gene3695;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO3745
AL590842.1	EMBL	CDS	4196679	4197137	.	+	0	ID=cds3641;Parent=gene3695;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL22332.1;Name=CAL22332.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL22332.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4196733	4197044	.	+	.	ID=id8913;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	4197264	4201484	.	-	.	ID=gene3696;Name=rpoC;gbkey=Gene;gene=rpoC;gene_biotype=protein_coding;gene_synonym=tabB;locus_tag=YPO3746
AL590842.1	EMBL	CDS	4197264	4201484	.	-	0	ID=cds3642;Parent=gene3696;Dbxref=GOA:Q8D1H3,InterPro:IPR000722,InterPro:IPR006592,InterPro:IPR007066,InterPro:IPR007080,InterPro:IPR007081,InterPro:IPR007083,InterPro:IPR012754,NCBI_GP:CAL22333.1;Name=CAL22333.1;Note=Similar to Escherichia coli DNA-directed RNA polymerase beta' chain RpoC or TabB SW:RPOC_ECOLI (P00577) (1407 aa) fasta scores: E(): 0%2C 92.8%25 id in 1404 aa%2C and to Salmonella typhimurium LT2 RpoC protein TR:Q9L9J7 (EMBL:AF170176) (1407 aa) fasta scores: E(): 0%2C 92.8%25 id in 1404 aa;gbkey=CDS;gene=rpoC;inference=similar to sequence:INSDC:AF170176;product=DNA-directed RNA polymerase beta' chain;protein_id=CAL22333.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4197381	4198820	.	-	.	ID=id8914;Note=Pfam match to entry PF01854 RNA_pol_A2%2C RNA polymerase A/beta/A subunit%2C score -112.80%2C E-value 0.00069;gbkey=misc_feature;gene=rpoC;inference=protein motif:PF01854
AL590842.1	EMBL	sequence_feature	4198992	4200782	.	-	.	ID=id8915;Note=Pfam match to entry PF00623 RNA_pol_A%2C RNA polymerase alpha subunit%2C score 989.50%2C E-value 0;gbkey=misc_feature;gene=rpoC;inference=protein motif:PF00623
AL590842.1	EMBL	gene	4201613	4205641	.	-	.	ID=gene3697;Name=groN;gbkey=Gene;gene=groN;gene_biotype=protein_coding;gene_synonym=nitB,rif,ron,rpoB,stl,stv,tabD;locus_tag=YPO3747
AL590842.1	EMBL	CDS	4201613	4205641	.	-	0	ID=cds3643;Parent=gene3697;Dbxref=GOA:Q8ZAP5,InterPro:IPR007120,InterPro:IPR007121,InterPro:IPR007641,InterPro:IPR007642,InterPro:IPR007644,InterPro:IPR007645,InterPro:IPR010243,InterPro:IPR014724,InterPro:IPR015712,InterPro:IPR019462,NCBI_GP:CAL22334.1;Name=CAL22334.1;Note=Similar to Escherichia coli DNA-directed RNA polymerase beta chain RpoB or GroN or NitB or Rif or Ron or Stl or Stv or TabD SW:RPOB_ECOLI (P00575) (1342 aa) fasta scores: E(): 0%2C 94.6%25 id in 1342 aa%2C and to Salmonella typhimurium DNA-directed RNA polymerase beta chain RpoB SW:RPOB_SALTY (P06173) (1342 aa) fasta scores: E(): 0%2C95.2%25 id in 1342 aa;gbkey=CDS;gene=groN;product=DNA-directed RNA polymerase beta chain;protein_id=CAL22334.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4201745	4205410	.	-	.	ID=id8916;Note=Pfam match to entry PF00562 RNA_pol_B%2C RNA polymerase beta subunit%2C score 2013.00%2C E-value 0;gbkey=misc_feature;gene=groN;inference=protein motif:PF00562
AL590842.1	EMBL	sequence_feature	4202417	4202455	.	-	.	ID=id8917;Note=PS01166 RNA polymerases beta chain signature.;gbkey=misc_feature;gene=groN;inference=protein motif:ProSite:PS01166
AL590842.1	EMBL	gene	4205984	4206352	.	-	.	ID=gene3698;Name=rplL;gbkey=Gene;gene=rplL;gene_biotype=protein_coding;locus_tag=YPO3748
AL590842.1	EMBL	CDS	4205984	4206352	.	-	0	ID=cds3644;Parent=gene3698;Dbxref=GOA:Q8ZAP4,InterPro:IPR000206,InterPro:IPR008932,InterPro:IPR013823,InterPro:IPR014719,NCBI_GP:CAL22335.1;Name=CAL22335.1;Note=Similar to Escherichia coli 50S ribosomal protein L7/L12 RplL SW:RL7_ECOLI (P02392) (120 aa) fasta scores: E(): 4.9e-27%2C 79.2%25 id in 120 aa%2C and to Salmonella typhimurium 50S ribosomal protein L7/L12 RplL SW:RL7_SALTY (P18081) (120 aa) fasta scores: E(): 7.4e-27%2C 79.7%25 id in 123 aa;gbkey=CDS;gene=rplL;product=50S ribosomal protein L7/L12;protein_id=CAL22335.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4205987	4206190	.	-	.	ID=id8918;Note=Pfam match to entry PF00542 Ribosomal_L12%2C Ribosomal protein L7/L12 C-terminal domain%2C score 127.90%2C E-value 1.9e-34;gbkey=misc_feature;gene=rplL;inference=protein motif:PF00542
AL590842.1	EMBL	gene	4206419	4206916	.	-	.	ID=gene3699;Name=rplJ;gbkey=Gene;gene=rplJ;gene_biotype=protein_coding;locus_tag=YPO3749
AL590842.1	EMBL	CDS	4206419	4206916	.	-	0	ID=cds3645;Parent=gene3699;Dbxref=GOA:Q8ZAP3,InterPro:IPR001790,InterPro:IPR002363,InterPro:IPR022973,NCBI_GP:CAL22336.1;Name=CAL22336.1;Note=Similar to Escherichia coli 50S ribosomal protein L10 RplJ SW:RL10_ECOLI (P02408) (164 aa) fasta scores: E(): 0%2C 90.2%25 id in 164 aa%2C and to Salmonella typhimurium 50S ribosomal protein L10 RplJ SW:RL10_SALTY (P17352) (164 aa) fasta scores: E(): 0%2C 90.2%25 id in 164 aa;gbkey=CDS;gene=rplJ;product=50S ribosomal protein L10;protein_id=CAL22336.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4206614	4206910	.	-	.	ID=id8919;Note=Pfam match to entry PF00466 Ribosomal_L10%2C Ribosomal protein L10%2C score 118.10%2C E-value 1.6e-31;gbkey=misc_feature;gene=rplJ;inference=protein motif:PF00466
AL590842.1	EMBL	sequence_feature	4206791	4206832	.	-	.	ID=id8920;Note=PS01109 Ribosomal protein L10 signature.;gbkey=misc_feature;gene=rplJ;inference=protein motif:ProSite:PS01109
AL590842.1	EMBL	gene	4207281	4207985	.	-	.	ID=gene3700;Name=rplA;gbkey=Gene;gene=rplA;gene_biotype=protein_coding;locus_tag=YPO3750
AL590842.1	EMBL	CDS	4207281	4207985	.	-	0	ID=cds3646;Parent=gene3700;Dbxref=GOA:Q8ZAP2,InterPro:IPR002143,InterPro:IPR005878,InterPro:IPR016094,InterPro:IPR016095,InterPro:IPR023673,InterPro:IPR023674,InterPro:IPR028364,NCBI_GP:CAL22337.1;Name=CAL22337.1;Note=Similar to Escherichia coli 50S ribosomal protein L1 RplA SW:RL1_ECOLI (P02384) (233 aa) fasta scores: E(): 0%2C91.8%25 id in 233 aa%2C and to Serratia marcescens 50S ribosomal protein L1 RplA SW:RL1_SERMA (P09764) (233 aa) fasta scores: E(): 0%2C 92.3%25 id in 233 aa;gbkey=CDS;gene=rplA;product=50S ribosomal protein L1;protein_id=CAL22337.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4207323	4207943	.	-	.	ID=id8921;Note=Pfam match to entry PF00687 Ribosomal_L1%2C L1P family of ribosomal proteins%2C score 428.20%2C E-value 7.2e-125;gbkey=misc_feature;gene=rplA;inference=protein motif:PF00687
AL590842.1	EMBL	sequence_feature	4207569	4207625	.	-	.	ID=id8922;Note=PS01199 Ribosomal protein L1 signature.;gbkey=misc_feature;gene=rplA;inference=protein motif:ProSite:PS01199
AL590842.1	EMBL	gene	4207989	4208417	.	-	.	ID=gene3701;Name=relC;gbkey=Gene;gene=relC;gene_biotype=protein_coding;gene_synonym=rplK;locus_tag=YPO3751
AL590842.1	EMBL	CDS	4207989	4208417	.	-	0	ID=cds3647;Parent=gene3701;Dbxref=GOA:Q8ZAP1,InterPro:IPR000911,InterPro:IPR006519,InterPro:IPR020783,InterPro:IPR020784,InterPro:IPR020785,NCBI_GP:CAL22338.1;Name=CAL22338.1;Note=Similar to Escherichia coli 50S ribosomal protein L11 RplK or RelC SW:RL11_ECOLI (P02409) (141 aa) fasta scores: E(): 0%2C 90.0%25 id in 140 aa%2C and to Serratia marcescens 50S ribosomal protein L11 RplK SW:RL11_SERMA (P09763) (141 aa) fasta scores: E(): 0%2C 95.7%25 id in 140 aa;gbkey=CDS;gene=relC;product=50S ribosomal protein L11;protein_id=CAL22338.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4207992	4208039	.	-	.	ID=id8923;Note=PS00359 Ribosomal protein L11 signature.;gbkey=misc_feature;gene=relC;inference=protein motif:ProSite:PS00359
AL590842.1	EMBL	sequence_feature	4207995	4208393	.	-	.	ID=id8924;Note=Pfam match to entry PF00298 Ribosomal_L11%2C Ribosomal protein L11%2C score 285.80%2C E-value 5.3e-82;gbkey=misc_feature;gene=relC;inference=protein motif:PF00298
AL590842.1	EMBL	gene	4208608	4209153	.	-	.	ID=gene3702;Name=nusG;gbkey=Gene;gene=nusG;gene_biotype=protein_coding;locus_tag=YPO3752
AL590842.1	EMBL	CDS	4208608	4209153	.	-	0	ID=cds3648;Parent=gene3702;Dbxref=GOA:Q8ZAP0,InterPro:IPR001062,InterPro:IPR005824,InterPro:IPR006645,InterPro:IPR008991,InterPro:IPR014722,InterPro:IPR015869,NCBI_GP:CAL22339.1;Name=CAL22339.1;Note=Similar to Escherichia coli transcription antitermination protein NusG SW:NUSG_ECOLI (P16921) (181 aa) fasta scores: E(): 0%2C 97.2%25 id in 180 aa%2C and to Salmonella typhimurium LT2 transcription antitermination protein NusG TR:Q9L9K0 (EMBL:AF170176) (181 aa) fasta scores: E(): 0%2C 97.8%25 id in 180 aa;gbkey=CDS;gene=nusG;inference=similar to sequence:INSDC:AF170176;product=transcription antitermination protein;protein_id=CAL22339.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4208635	4208664	.	-	.	ID=id8925;Note=PS01014 Transcription termination factor nusG signature.;gbkey=misc_feature;gene=nusG;inference=protein motif:ProSite:PS01014
AL590842.1	EMBL	sequence_feature	4209007	4209138	.	-	.	ID=id8926;Note=Pfam match to entry PF02357 NusG%2C %2C score 81.10%2CE-value 2.3e-20;gbkey=misc_feature;gene=nusG;inference=protein motif:PF02357
AL590842.1	EMBL	gene	4209155	4209538	.	-	.	ID=gene3703;Name=prlG;gbkey=Gene;gene=prlG;gene_biotype=protein_coding;gene_synonym=secE;locus_tag=YPO3753
AL590842.1	EMBL	CDS	4209155	4209538	.	-	0	ID=cds3649;Parent=gene3703;Dbxref=GOA:Q0WAQ5,InterPro:IPR001901,InterPro:IPR005807,InterPro:IPR022943,UniProtKB/TrEMBL:Q0WAQ5,NCBI_GP:CAL22340.1;Name=CAL22340.1;Note=Similar to Escherichia coli preprotein translocase SecE subunit or PrlG SW:SECE_ECOLI (P16920) (127 aa) fasta scores: E(): 0%2C 85.8%25 id in 127 aa%2C and to Salmonella typhimurium LT2 SecE protein TR:Q9L9K1 (EMBL:AF170176) (127 aa) fasta scores: E(): 0%2C 86.6%25 id in 127 aa;gbkey=CDS;gene=prlG;inference=similar to sequence:INSDC:AF170176;product=preprotein translocase SecE subunit;protein_id=CAL22340.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4209170	4209340	.	-	.	ID=id8927;Note=Pfam match to entry PF00584 SecE%2C SecE/Sec61-gamma subunits of protein translocation complex%2C score 97.20%2CE-value 3.2e-25;gbkey=misc_feature;gene=prlG;inference=protein motif:PF00584
AL590842.1	EMBL	sequence_feature	4209191	4209256	.	-	.	ID=id8928;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=prlG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4209242	4209328	.	-	.	ID=id8929;Note=PS01067 Protein secE/sec61-gamma signature.;gbkey=misc_feature;gene=prlG;inference=protein motif:ProSite:PS01067
AL590842.1	EMBL	sequence_feature	4209350	4209415	.	-	.	ID=id8930;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=prlG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4209431	4209481	.	-	.	ID=id8931;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=prlG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4209789	4210973	.	-	.	ID=gene3704;Name=tufA;gbkey=Gene;gene=tufA;gene_biotype=protein_coding;gene_synonym=tufB;locus_tag=YPO3754
AL590842.1	EMBL	CDS	4209789	4210973	.	-	0	ID=cds3650;Parent=gene3704;Dbxref=GOA:Q8ZAN8,InterPro:IPR000795,InterPro:IPR004160,InterPro:IPR004161,InterPro:IPR004541,InterPro:IPR005225,InterPro:IPR009000,InterPro:IPR009001,InterPro:IPR027417,NCBI_GP:CAL22341.1;Name=CAL22341.1;Note=Similar to Escherichia coli elongation factor Tu%2CTufA and TufB SW:EFTU_ECOLI (P02990) (393 aa) fasta scores: E(): 0%2C 93.6%25 id in 392 aa%2C and to Salmonella typhimurium elongation factor Tu%2C TufA and TufB SW:EFTU_SALTY (P21694) (393 aa) fasta scores: E(): 0%2C 93.9%25 id in 392 aa. Similar to YPO0203 (94.4%25 identity in 393 aa overlap);gbkey=CDS;gene=tufA;product=elongation factor Tu;protein_id=CAL22341.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4209852	4210946	.	-	.	ID=id8932;Note=Pfam match to entry PF00009 GTP_EFTU%2C Elongation factor Tu family%2C score 493.40%2C E-value 1.2e-145;gbkey=misc_feature;gene=tufA;inference=protein motif:PF00009
AL590842.1	EMBL	sequence_feature	4210776	4210823	.	-	.	ID=id8933;Note=PS00301 GTP-binding elongation factors signature.;gbkey=misc_feature;gene=tufA;inference=protein motif:ProSite:PS00301
AL590842.1	EMBL	sequence_feature	4210896	4210919	.	-	.	ID=id8934;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=tufA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	tRNA	4211082	4211157	.	-	.	ID=rna86;Note=tRNA Thr anticodon GGT%2C Cove score 94.75;gbkey=tRNA;product=tRNA-Thr
AL590842.1	EMBL	exon	4211082	4211157	.	-	.	ID=id8935;Parent=rna86;Note=tRNA Thr anticodon GGT%2C Cove score 94.75;gbkey=tRNA;product=tRNA-Thr
AL590842.1	EMBL	tRNA	4211164	4211238	.	-	.	ID=rna87;Note=tRNA Gly anticodon TCC%2C Cove score 63.22;gbkey=tRNA;product=tRNA-Gly
AL590842.1	EMBL	exon	4211164	4211238	.	-	.	ID=id8936;Parent=rna87;Note=tRNA Gly anticodon TCC%2C Cove score 63.22;gbkey=tRNA;product=tRNA-Gly
AL590842.1	EMBL	tRNA	4211388	4211472	.	-	.	ID=rna88;Note=tRNA Tyr anticodon GTA%2C Cove score 66.93;gbkey=tRNA;product=tRNA-Tyr
AL590842.1	EMBL	exon	4211388	4211472	.	-	.	ID=id8937;Parent=rna88;Note=tRNA Tyr anticodon GTA%2C Cove score 66.93;gbkey=tRNA;product=tRNA-Tyr
AL590842.1	EMBL	tRNA	4211491	4211566	.	-	.	ID=rna89;Note=tRNA Thr anticodon TGT%2C Cove score 93.97;gbkey=tRNA;product=tRNA-Thr
AL590842.1	EMBL	exon	4211491	4211566	.	-	.	ID=id8938;Parent=rna89;Note=tRNA Thr anticodon TGT%2C Cove score 93.97;gbkey=tRNA;product=tRNA-Thr
AL590842.1	EMBL	repeat_region	4211964	4213917	.	-	.	ID=id8939;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	4211964	4211991	.	+	.	ID=id8940;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	4212030	4212812	.	-	.	ID=gene3705;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO3755
AL590842.1	EMBL	CDS	4212030	4212812	.	-	0	ID=cds3651;Parent=gene3705;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL22342.1;Name=CAL22342.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL22342.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4212105	4212644	.	-	.	ID=id8941;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	4212462	4212485	.	-	.	ID=id8942;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4212809	4213831	.	-	.	ID=gene3706;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO3756
AL590842.1	EMBL	CDS	4212809	4213831	.	-	0	ID=cds3652;Parent=gene3706;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL22343.1;Name=CAL22343.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL22343.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4212953	4213486	.	-	.	ID=id8943;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	sequence_feature	4213715	4213780	.	-	.	ID=id8944;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	4213724	4213807	.	-	.	ID=id8945;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	INVERTED	4213890	4213917	.	-	.	ID=id8946;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	4213921	4214472	.	+	.	ID=gene3707;Name=YPO3757;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3757
AL590842.1	EMBL	CDS	4213921	4214472	.	+	0	ID=cds3653;Parent=gene3707;Dbxref=GOA:Q74R05,InterPro:IPR000182,InterPro:IPR016181,UniProtKB/TrEMBL:Q74R05,NCBI_GP:CAL22344.1;Name=CAL22344.1;Note=Similar to Pseudomonas syringae acetyltransferase Ttr SW:TTR_PSESY (P16966) (177 aa) fasta scores: E(): 2.5e-29%2C 47.6%25 id in 166 aa%2C and to Streptomyces coelicolor putative acetyltransferase Sc1a2.12 TR:Q9L229 (EMBL:AL138598) (181 aa) fasta scores: E(): 2e-21%2C 40.9%25 id in 164 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL138598;product=putative acetyltransferase;protein_id=CAL22344.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4214119	4214355	.	+	.	ID=id8947;Note=Pfam match to entry PF00583 Acetyltransf%2CAcetyltransferase (GNAT) family%2C score 39.60%2C E-value 7.3e-08;gbkey=misc_feature;inference=protein motif:PF00583
AL590842.1	EMBL	gene	4214683	4215633	.	+	.	ID=gene3708;Name=coaA;gbkey=Gene;gene=coaA;gene_biotype=protein_coding;gene_synonym=panK,rts;locus_tag=YPO3758
AL590842.1	EMBL	CDS	4214683	4215633	.	+	0	ID=cds3654;Parent=gene3708;Dbxref=GOA:Q8ZAN6,InterPro:IPR004566,InterPro:IPR006083,InterPro:IPR027417,NCBI_GP:CAL22345.1;Name=CAL22345.1;Note=Similar to Escherichia coli pantothenate kinase CoaA or Rts or PanK SW:COAA_ECOLI (P15044) (316 aa) fasta scores: E(): 0%2C 85.8%25 id in 316 aa%2C and to Salmonella typhimurium pantothenate kinase CoaA SW:COAA_SALTY (Q9L9K3) (316 aa) fasta scores: E(): 0%2C 85.8%25 id in 316 aa;gbkey=CDS;gene=coaA;product=pantothenate kinase;protein_id=CAL22345.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4214950	4215411	.	+	.	ID=id8948;Note=Pfam match to entry PF00485 PRK%2CPhosphoribulokinase%2C score 40.30%2C E-value 1.6e-10;gbkey=misc_feature;gene=coaA;inference=protein motif:PF00485
AL590842.1	EMBL	sequence_feature	4214965	4214988	.	+	.	ID=id8949;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=coaA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4215668	4216627	.	-	.	ID=gene3709;Name=bioR;gbkey=Gene;gene=bioR;gene_biotype=protein_coding;gene_synonym=birA,dhbB;locus_tag=YPO3759
AL590842.1	EMBL	CDS	4215668	4216627	.	-	0	ID=cds3655;Parent=gene3709;Dbxref=GOA:Q7CKU2,InterPro:IPR003142,InterPro:IPR004143,InterPro:IPR004408,InterPro:IPR004409,InterPro:IPR008988,InterPro:IPR011991,InterPro:IPR013196,UniProtKB/TrEMBL:Q7CKU2,NCBI_GP:CAL22346.1;Name=CAL22346.1;Note=Similar to Escherichia coli BirA bifunctional protein%2C includes: biotin operon repressor%3B biotin--[acetyl-CoA-carboxylase] synthetase%2C BirA or BioR or DhbB SW:BIRA_ECOLI (P06709) (321 aa) fasta scores: E(): 0%2C 75.4%25 id in 317 aa%2C and to Salmonella typhimurium LT2 bifunctional protein BirA TR:Q9L9K4 (EMBL:AF170176) (320 aa) fasta scores: E(): 0%2C 76.7%25 id in 317 aa;gbkey=CDS;gene=bioR;inference=similar to sequence:INSDC:AF170176;product=bifunctional protein BirA;protein_id=CAL22346.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4215677	4215817	.	-	.	ID=id8950;Note=Pfam match to entry PF02237 BPL_C%2C Biotin protein ligase C terminal domain%2C score 67.70%2C E-value 2.4e-16;gbkey=misc_feature;gene=bioR;inference=protein motif:PF02237
AL590842.1	EMBL	sequence_feature	4215890	4216384	.	-	.	ID=id8951;Note=Pfam match to entry PF01317 BPL%2C Biotin protein ligase catalytic domain%2C score 221.40%2C E-value 1.4e-62;gbkey=misc_feature;gene=bioR;inference=protein motif:PF01317
AL590842.1	EMBL	sequence_feature	4216505	4216570	.	-	.	ID=id8952;Note=Predicted helix-turn-helix motif with score 1450 (+4.13 SD) at aa 20-41%2C sequence HSGEQLGETLGMSRAAINKHMQ;gbkey=misc_feature;gene=bioR
AL590842.1	EMBL	gene	4216624	4217661	.	-	.	ID=gene3710;Name=murB;gbkey=Gene;gene=murB;gene_biotype=protein_coding;locus_tag=YPO3760
AL590842.1	EMBL	CDS	4216624	4217661	.	-	0	ID=cds3656;Parent=gene3710;Dbxref=GOA:Q8ZAN4,InterPro:IPR003170,InterPro:IPR006094,InterPro:IPR011601,InterPro:IPR016166,InterPro:IPR016167,InterPro:IPR016169,NCBI_GP:CAL22347.1;Name=CAL22347.1;Note=Similar to Escherichia coli UDP-N-acetylenolpyruvoylglucosamine reductase MurB SW:MURB_ECOLI (P08373) (342 aa) fasta scores: E(): 0%2C 61.9%25 id in 339 aa%2C and to Salmonella typhimurium UDP-N-acetylenolpyruvoylglucosamine reductase MurB or Stmf1.1 SW:MURB_SALTY (P37417) (342 aa) fasta scores: E(): 0%2C 62.5%25 id in 339 aa;gbkey=CDS;gene=murB;product=UDP-N-acetylenolpyruvoylglucosamine reductase;protein_id=CAL22347.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4216666	4217412	.	-	.	ID=id8953;Note=Pfam match to entry PF02215 MurB%2CUDP-N-acetylenolpyruvoylglucosamine reductase%2C score 392.90%2C E-value 3.2e-114;gbkey=misc_feature;gene=murB;inference=protein motif:PF02215
AL590842.1	EMBL	gene	4218117	4218350	.	-	.	ID=gene3711;Name=5S_rRNA;gbkey=Gene;gene=5S_rRNA;gene_biotype=rRNA
AL590842.1	EMBL	rRNA	4218117	4218350	.	-	.	ID=rna90;Parent=gene3711;Note=match to 5SrRNA 1..234 blast score 1149 percent identity 99 (incl. 23S-5S spacer);gbkey=rRNA;gene=5S_rRNA
AL590842.1	EMBL	exon	4218117	4218350	.	-	.	ID=id8954;Parent=rna90;Note=match to 5SrRNA 1..234 blast score 1149 percent identity 99 (incl. 23S-5S spacer);gbkey=rRNA;gene=5S_rRNA
AL590842.1	EMBL	gene	4218350	4221256	.	-	.	ID=gene3712;Name=23S_rRNA;gbkey=Gene;gene=23S_rRNA;gene_biotype=rRNA
AL590842.1	EMBL	rRNA	4218350	4221256	.	-	.	ID=rna91;Parent=gene3712;Note=match to 23S_rRNA 1..2906 (Y. enterocolitica 23S EMBL:U77925);gbkey=rRNA;gene=23S_rRNA
AL590842.1	EMBL	exon	4218350	4221256	.	-	.	ID=id8955;Parent=rna91;Note=match to 23S_rRNA 1..2906 (Y. enterocolitica 23S EMBL:U77925);gbkey=rRNA;gene=23S_rRNA
AL590842.1	EMBL	tRNA	4221475	4221550	.	-	.	ID=rna92;Note=tRNA Ala anticodon TGC%2C Cove score 93.97;gbkey=tRNA;product=tRNA-Ala
AL590842.1	EMBL	exon	4221475	4221550	.	-	.	ID=id8956;Parent=rna92;Note=tRNA Ala anticodon TGC%2C Cove score 93.97;gbkey=tRNA;product=tRNA-Ala
AL590842.1	EMBL	tRNA	4221602	4221678	.	-	.	ID=rna93;Note=tRNA Ile anticodon GAT%2C Cove score 94.77;gbkey=tRNA;product=tRNA-Ile
AL590842.1	EMBL	exon	4221602	4221678	.	-	.	ID=id8957;Parent=rna93;Note=tRNA Ile anticodon GAT%2C Cove score 94.77;gbkey=tRNA;product=tRNA-Ile
AL590842.1	EMBL	gene	4221808	4223296	.	-	.	ID=gene3713;Name=16S_rRNA;gbkey=Gene;gene=16S_rRNA;gene_biotype=rRNA
AL590842.1	EMBL	rRNA	4221808	4223296	.	-	.	ID=rna94;Parent=gene3713;Note=match to 16S_rRNA 1..1489(EMBL:YPE16SA);gbkey=rRNA;gene=16S_rRNA
AL590842.1	EMBL	exon	4221808	4223296	.	-	.	ID=id8958;Parent=rna94;Note=match to 16S_rRNA 1..1489(EMBL:YPE16SA);gbkey=rRNA;gene=16S_rRNA
AL590842.1	EMBL	gene	4223798	4224331	.	-	.	ID=gene3714;Name=hemG;gbkey=Gene;gene=hemG;gene_biotype=protein_coding;locus_tag=YPO3761
AL590842.1	EMBL	CDS	4223798	4224331	.	-	0	ID=cds3657;Parent=gene3714;Dbxref=GOA:Q7CKU3,InterPro:IPR001226,InterPro:IPR008254,InterPro:IPR026816,InterPro:IPR029039,UniProtKB/TrEMBL:Q7CKU3,NCBI_GP:CAL22348.1;Name=CAL22348.1;Note=Similar to Escherichia coli protoporphyrinogen oxidase HemG SW:HEMG_ECOLI (P27863) (181 aa) fasta scores: E(): 0%2C 57.2%25 id in 180 aa%2C and to Salmonella typhimurium LT2 HemG protein TR:Q9L6L1 (EMBL:AF233324) (181 aa) fasta scores: E(): 0%2C 54.8%25 id in 177 aa;gbkey=CDS;gene=hemG;inference=similar to sequence:INSDC:AF233324;product=protoporphyrinogen oxidase;protein_id=CAL22348.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4224167	4224328	.	-	.	ID=id8959;Note=Pfam match to entry PF00258 flavodoxin%2C Flavodoxins%2Cscore 27.50%2C E-value 2.2e-06;gbkey=misc_feature;gene=hemG;inference=protein motif:PF00258
AL590842.1	EMBL	sequence_feature	4224269	4224319	.	-	.	ID=id8960;Note=PS00201 Flavodoxin signature.;gbkey=misc_feature;gene=hemG;inference=protein motif:ProSite:PS00201
AL590842.1	EMBL	gene	4224353	4225804	.	-	.	ID=gene3715;Name=trkH;gbkey=Gene;gene=trkH;gene_biotype=protein_coding;locus_tag=YPO3762
AL590842.1	EMBL	CDS	4224353	4225804	.	-	0	ID=cds3658;Parent=gene3715;Dbxref=GOA:Q7CKU4,InterPro:IPR003445,InterPro:IPR004772,UniProtKB/TrEMBL:Q7CKU4,NCBI_GP:CAL22349.1;Name=CAL22349.1;Note=Similar to Escherichia coli Trk system potassium uptake protein TrkH SW:TRKH_ECOLI (P21166) (483 aa) fasta scores: E(): 0%2C 88.6%25 id in 483 aa%2C and to Salmonella typhimurium LT2 TrkH protein TR:Q9L6L2 (EMBL:AF233324) (483 aa) fasta scores: E(): 0%2C 88.2%25 id in 483 aa;gbkey=CDS;gene=trkH;inference=similar to sequence:INSDC:AF233324;product=Trk system potassium uptake protein TrkH;protein_id=CAL22349.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4224362	4225618	.	-	.	ID=id8961;Note=Pfam match to entry PF02386 TrkH%2C %2C score 537.50%2CE-value 9e-158;gbkey=misc_feature;gene=trkH;inference=protein motif:PF02386
AL590842.1	EMBL	sequence_feature	4224371	4224436	.	-	.	ID=id8962;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=trkH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4224473	4224538	.	-	.	ID=id8963;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=trkH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4224551	4224616	.	-	.	ID=id8964;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=trkH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4224746	4224811	.	-	.	ID=id8965;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=trkH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4224920	4224985	.	-	.	ID=id8966;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=trkH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4225025	4225090	.	-	.	ID=id8967;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=trkH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4225184	4225249	.	-	.	ID=id8968;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=trkH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4225340	4225405	.	-	.	ID=id8969;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=trkH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4225532	4225597	.	-	.	ID=id8970;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=trkH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4225634	4225699	.	-	.	ID=id8971;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=trkH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4225712	4225777	.	-	.	ID=id8972;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=trkH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	pseudogene	4227001	4227165	.	-	.	ID=gene3716;Name=YPO3763;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO3763;part=1/2;pseudo=true
AL590842.1	EMBL	pseudogene	4225844	4226284	.	-	.	ID=gene3716;Name=YPO3763;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO3763;part=2/2;pseudo=true
AL590842.1	EMBL	CDS	4227001	4227165	.	-	0	ID=cds3659;Parent=gene3716;Dbxref=PSEUDO:CAL22350.1;Note=This CDS is disrupted by the insertion of IS1541. The full length CDS is similar to Escherichia coli hypothetical 21.9 kDa protein in pepQ-trkH intergenic region YigZ SW:YIGZ_ECOLI (P27862) (205 aa) fasta scores: E(): 0%2C 63.9%25 id in 202 aa%2C and to Salmonella typhimurium LT2 YigZ protein TR:Q9L6L3 (EMBL:AF233324) (204 aa) fasta scores: E(): 0%2C 64.4%25 id in 202 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF233324;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	CDS	4225844	4226284	.	-	0	ID=cds3659;Parent=gene3716;Dbxref=PSEUDO:CAL22350.1;Note=This CDS is disrupted by the insertion of IS1541. The full length CDS is similar to Escherichia coli hypothetical 21.9 kDa protein in pepQ-trkH intergenic region YigZ SW:YIGZ_ECOLI (P27862) (205 aa) fasta scores: E(): 0%2C 63.9%25 id in 202 aa%2C and to Salmonella typhimurium LT2 YigZ protein TR:Q9L6L3 (EMBL:AF233324) (204 aa) fasta scores: E(): 0%2C 64.4%25 id in 202 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF233324;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	4226129	4226218	.	-	.	ID=id8973;Note=PS00910 Uncharacterized protein family UPF0029 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00910
AL590842.1	EMBL	sequence_feature	4225847	4226320	.	-	.	ID=id8974;Note=Pfam match to entry PF01205 UPF0029%2C Uncharacterized protein family UPF0029%2C score 111.90%2C E-value 1.3e-29;gbkey=misc_feature;inference=protein motif:PF01205
AL590842.1	EMBL	repeat_region	4226285	4226996	.	-	.	ID=id8975;Note=Contains a 'A' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	4226393	4226851	.	-	.	ID=gene3717;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO3764
AL590842.1	EMBL	CDS	4226393	4226851	.	-	0	ID=cds3660;Parent=gene3717;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL22351.1;Name=CAL22351.1;Note=Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL22351.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4226486	4226797	.	-	.	ID=id8976;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	4227165	4228496	.	-	.	ID=gene3718;Name=pepQ;gbkey=Gene;gene=pepQ;gene_biotype=protein_coding;locus_tag=YPO3765
AL590842.1	EMBL	CDS	4227165	4228496	.	-	0	ID=cds3661;Parent=gene3718;Dbxref=GOA:Q0WAP4,InterPro:IPR000994,InterPro:IPR001131,InterPro:IPR022846,NCBI_GP:CAL22352.1;Name=CAL22352.1;Note=Similar to Escherichia coli proline dipeptidase PepQ SW:PEPQ_ECOLI (P21165) (443 aa) fasta scores: E(): 0%2C 73.6%25 id in 443 aa%2C and to Salmonella typhimurium LT2 PepQ protein TR:Q9L6L4 (EMBL:AF233324) (443 aa) fasta scores: E(): 0%2C 74.7%25 id in 443 aa;gbkey=CDS;gene=pepQ;inference=similar to sequence:INSDC:AF233324;product=proline dipeptidase;protein_id=CAL22352.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4227195	4228019	.	-	.	ID=id8977;Note=Pfam match to entry PF00557 Peptidase_M24%2Cmetallopeptidase family M24%2C score 260.70%2C E-value 2e-74;gbkey=misc_feature;gene=pepQ;inference=protein motif:PF00557
AL590842.1	EMBL	sequence_feature	4227456	4227494	.	-	.	ID=id8978;Note=PS00491 Aminopeptidase P and proline dipeptidase signature.;gbkey=misc_feature;gene=pepQ;inference=protein motif:ProSite:PS00491
AL590842.1	EMBL	gene	4228823	4231012	.	+	.	ID=gene3719;Name=fadB;gbkey=Gene;gene=fadB;gene_biotype=protein_coding;gene_synonym=oldB;locus_tag=YPO3766
AL590842.1	EMBL	CDS	4228823	4231012	.	+	0	ID=cds3662;Parent=gene3719;Dbxref=GOA:Q8ZAN0,InterPro:IPR001753,InterPro:IPR006108,InterPro:IPR006176,InterPro:IPR006180,InterPro:IPR008927,InterPro:IPR012799,InterPro:IPR013328,InterPro:IPR016040,InterPro:IPR018376,InterPro:IPR029045,NCBI_GP:CAL22353.1;Name=CAL22353.1;Note=Similar to Escherichia coli fatty acid oxidation complex alpha subunit FadB or OldB SW:FADB_ECOLI (P21177) (729 aa) fasta scores: E(): 0%2C 77.3%25 id in 715 aa%2C and to Salmonella typhimurium LT2 FadB protein TR:Q9L6L5 (EMBL:AF233324) (729 aa) fasta scores: E(): 0%2C 77.3%25 id in 715 aa;gbkey=CDS;gene=fadB;inference=similar to sequence:INSDC:AF233324;product=fatty acid oxidation complex alpha subunit;protein_id=CAL22353.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4228874	4229389	.	+	.	ID=id8979;Note=Pfam match to entry PF00378 ECH%2C Enoyl-CoA hydratase/isomerase family%2C score 276.00%2C E-value 4.7e-79;gbkey=misc_feature;gene=fadB;inference=protein motif:PF00378
AL590842.1	EMBL	sequence_feature	4229138	4229200	.	+	.	ID=id8980;Note=PS00166 Enoyl-CoA hydratase/isomerase signature.;gbkey=misc_feature;gene=fadB;inference=protein motif:ProSite:PS00166
AL590842.1	EMBL	sequence_feature	4229768	4230598	.	+	.	ID=id8981;Note=Pfam match to entry PF00725 3HCDH%2C 3-hydroxyacyl-CoA dehydrogenase%2C score 529.20%2C E-value 3e-155;gbkey=misc_feature;gene=fadB;inference=protein motif:PF00725
AL590842.1	EMBL	sequence_feature	4230299	4230373	.	+	.	ID=id8982;Note=PS00067 3-hydroxyacyl-CoA dehydrogenase signature.;gbkey=misc_feature;gene=fadB;inference=protein motif:ProSite:PS00067
AL590842.1	EMBL	gene	4231024	4232187	.	+	.	ID=gene3720;Name=fadA;gbkey=Gene;gene=fadA;gene_biotype=protein_coding;gene_synonym=oldA;locus_tag=YPO3767
AL590842.1	EMBL	CDS	4231024	4232187	.	+	0	ID=cds3663;Parent=gene3720;Dbxref=GOA:Q8ZAM9,InterPro:IPR002155,InterPro:IPR012805,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR020610,InterPro:IPR020613,InterPro:IPR020615,InterPro:IPR020616,InterPro:IPR020617,NCBI_GP:CAL22354.1;Name=CAL22354.1;Note=Similar to Escherichia coli 3-ketoacyl-CoA thiolase FadA or OldA SW:THIK_ECOLI (P21151) (387 aa) fasta scores: E(): 0%2C 80.4%25 id in 387 aa%2C and to Salmonella typhimurium LT2 FadA protein TR:Q9L6L6 (EMBL:AF233324) (387 aa) fasta scores: E(): 0%2C 79.8%25 id in 387 aa;gbkey=CDS;gene=fadA;inference=similar to sequence:INSDC:AF233324;product=3-ketoacyl-CoA thiolase;protein_id=CAL22354.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4231024	4232184	.	+	.	ID=id8983;Note=Pfam match to entry PF00108 thiolase%2C Thiolase%2Cscore 730.80%2C E-value 6.2e-216;gbkey=misc_feature;gene=fadA;inference=protein motif:PF00108
AL590842.1	EMBL	sequence_feature	4231282	4231338	.	+	.	ID=id8984;Note=PS00098 Thiolases acyl-enzyme intermediate signature.;gbkey=misc_feature;gene=fadA;inference=protein motif:ProSite:PS00098
AL590842.1	EMBL	sequence_feature	4231705	4231737	.	+	.	ID=id8985;Note=PS00178 Aminoacyl-transfer RNA synthetases class-I signature.;gbkey=misc_feature;gene=fadA;inference=protein motif:ProSite:PS00178
AL590842.1	EMBL	sequence_feature	4232020	4232070	.	+	.	ID=id8986;Note=PS00737 Thiolases signature 2.;gbkey=misc_feature;gene=fadA;inference=protein motif:ProSite:PS00737
AL590842.1	EMBL	sequence_feature	4232125	4232166	.	+	.	ID=id8987;Note=PS00099 Thiolases active site.;gbkey=misc_feature;gene=fadA;inference=protein motif:ProSite:PS00099
AL590842.1	EMBL	gene	4232347	4233048	.	-	.	ID=gene3721;Name=fadI;gbkey=Gene;gene=fadI;gene_biotype=protein_coding;gene_synonym=flrD,fre,fsrC,ubiB;locus_tag=YPO3768
AL590842.1	EMBL	CDS	4232347	4233048	.	-	0	ID=cds3664;Parent=gene3721;Dbxref=GOA:Q0WAP1,InterPro:IPR001221,InterPro:IPR001433,InterPro:IPR008333,InterPro:IPR017927,InterPro:IPR017938,UniProtKB/TrEMBL:Q0WAP1,NCBI_GP:CAL22355.1;Name=CAL22355.1;Note=Similar to Escherichia coli NAD(P)H-flavin reductase Fre or FlrD or FadI or FsrC or UbiB SW:FRE_ECOLI (P23486) (232 aa) fasta scores: E(): 0%2C 77.6%25 id in 232 aa%2C and to Salmonella typhimurium LT2 UbiB protein TR:Q9L6L9 (EMBL:AF233324) (233 aa) fasta scores: E(): 0%2C 79.4%25 id in 233 aa;gbkey=CDS;gene=fadI;inference=similar to sequence:INSDC:AF233324;product=NAD(P)H-flavin reductase;protein_id=CAL22355.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4232410	4232742	.	-	.	ID=id8988;Note=Pfam match to entry PF00175 oxidored_fad%2COxidoreductase FAD/NAD-binding domain%2C score 124.20%2CE-value 2.5e-33;gbkey=misc_feature;gene=fadI;inference=protein motif:PF00175
AL590842.1	EMBL	gene	4233103	4234599	.	-	.	ID=gene3722;Name=YPO3769;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3769
AL590842.1	EMBL	CDS	4233103	4234599	.	-	0	ID=cds3665;Parent=gene3722;Dbxref=GOA:Q0WAP0,InterPro:IPR002830,InterPro:IPR012349,InterPro:IPR023677,NCBI_GP:CAL22356.1;Name=CAL22356.1;Note=Similar to Escherichia coli hypothetical protein YigC SW:YIGC_ECOLI (P26615) (497 aa) fasta scores: E(): 0%2C89.0%25 id in 493 aa%2C and to Salmonella typhimurium LT2 YigC protein TR:Q9L6M0 (EMBL:AF233324) (492 aa) fasta scores: E(): 0%2C 87.8%25 id in 491 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF233324;product=conserved hypothetical protein;protein_id=CAL22356.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4233289	4234563	.	-	.	ID=id8989;Note=Pfam match to entry PF01977 UPF0096%2C Protein of unknown function UPF0096%2C score 810.50%2C E-value 6.2e-240;gbkey=misc_feature;inference=protein motif:PF01977
AL590842.1	EMBL	gene	4234847	4235335	.	+	.	ID=gene3723;Name=hlyT;gbkey=Gene;gene=hlyT;gene_biotype=protein_coding;gene_synonym=rfaH,sfrB;locus_tag=YPO3770
AL590842.1	EMBL	CDS	4234847	4235335	.	+	0	ID=cds3666;Parent=gene3723;Dbxref=GOA:Q7CKU6,InterPro:IPR005824,InterPro:IPR006645,InterPro:IPR010215,UniProtKB/TrEMBL:Q7CKU6,NCBI_GP:CAL22357.1;Name=CAL22357.1;Note=Similar to Escherichia coli transcriptional activator RfaH or HlyT or SfrB SW:RFAH_ECOLI (P26614) (162 aa) fasta scores: E(): 0%2C 64.0%25 id in 161 aa%2C and to Erwinia chrysanthemi transcriptional activator RfaH TR:Q9ZEL8 (EMBL:AJ132239) (162 aa) fasta scores: E(): 0%2C70.2%25 id in 161 aa;gbkey=CDS;gene=hlyT;inference=similar to sequence:INSDC:AJ132239;product=putative regulatory protein;protein_id=CAL22357.1;transl_table=11
AL590842.1	EMBL	gene	4235445	4236467	.	-	.	ID=gene3724;Name=hemB;gbkey=Gene;gene=hemB;gene_biotype=protein_coding;gene_synonym=ncf;locus_tag=YPO3771
AL590842.1	EMBL	CDS	4235445	4236467	.	-	0	ID=cds3667;Parent=gene3724;Dbxref=GOA:Q7CKU7,InterPro:IPR001731,InterPro:IPR013785,UniProtKB/TrEMBL:Q7CKU7,NCBI_GP:CAL22358.1;Name=CAL22358.1;Note=Similar to Pseudomonas aeruginosa delta-aminolevulinic acid dehydratase HemB or Pa5243 SW:HEM2_PSEAE (Q59643) (337 aa) fasta scores: E(): 0%2C 69.8%25 id in 325 aa%2C and to Vibrio cholerae delta-aminolevulinic acid dehydratase HemB or Vc0105 TR:Q9KVN6 (EMBL:AE004101) (347 aa) fasta scores: E(): 0%2C 71.7%25 id in 339 aa;gbkey=CDS;gene=hemB;inference=similar to sequence:INSDC:AE004101;product=delta-aminolevulinic acid dehydratase;protein_id=CAL22358.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4235490	4236398	.	-	.	ID=id8990;Note=Pfam match to entry PF00490 ALAD%2CDelta-aminolevulinic acid dehydratase%2C score 632.20%2CE-value 2.8e-186;gbkey=misc_feature;gene=hemB;inference=protein motif:PF00490
AL590842.1	EMBL	sequence_feature	4235676	4235714	.	-	.	ID=id8991;Note=PS00169 Delta-aminolevulinic acid dehydratase active site.;gbkey=misc_feature;gene=hemB;inference=protein motif:ProSite:PS00169
AL590842.1	EMBL	pseudogene	4238744	4239223	.	-	.	ID=gene3725;Name=mttC;gbkey=Gene;gene=mttC;gene_biotype=pseudogene;gene_synonym=tatD;is_ordered=true;locus_tag=YPO3775;part=1/2;pseudo=true
AL590842.1	EMBL	pseudogene	4236482	4236784	.	-	.	ID=gene3725;Name=mttC;gbkey=Gene;gene=mttC;gene_biotype=pseudogene;gene_synonym=tatD;is_ordered=true;locus_tag=YPO3775;part=2/2;pseudo=true
AL590842.1	EMBL	CDS	4238744	4239223	.	-	0	ID=cds3668;Parent=gene3725;Dbxref=PSEUDO:CAL22359.1;Note=This CDS is disrupted by the insertion of IS100. The full length CDS is similar to Escherichia coli deoxyribonuclease TatD or MttC or B3840/B3841 SW:TATD_ECOLI (P27859) (264 aa) fasta scores: E(): 0%2C 66.1%25 id in 257 aa;gbkey=CDS;gene=mttC;product=deoxyribonuclease TatD (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	CDS	4236482	4236784	.	-	0	ID=cds3668;Parent=gene3725;Dbxref=PSEUDO:CAL22359.1;Note=This CDS is disrupted by the insertion of IS100. The full length CDS is similar to Escherichia coli deoxyribonuclease TatD or MttC or B3840/B3841 SW:TATD_ECOLI (P27859) (264 aa) fasta scores: E(): 0%2C 66.1%25 id in 257 aa;gbkey=CDS;gene=mttC;product=deoxyribonuclease TatD (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	4236647	4236697	.	-	.	ID=id8992;Note=PS01091 Uncharacterized protein family UPF0006 signature 3.;gbkey=misc_feature;gene=mttC;inference=protein motif:ProSite:PS01091
AL590842.1	EMBL	sequence_feature	4238744	4238751	.	-	.	ID=id8993;Note=Sequence duplication around IS insertion;gbkey=misc_feature;gene=mttC
AL590842.1	EMBL	sequence_feature	4238822	4238854	.	-	.	ID=id8994;Note=PS01090 Uncharacterized protein family UPF0006 signature 2.;gbkey=misc_feature;gene=mttC;inference=protein motif:ProSite:PS01090
AL590842.1	EMBL	sequence_feature	4236773	4236793	.	-	.	ID=id8995;Note=PS00387 Inorganic pyrophosphatase signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00387
AL590842.1	EMBL	sequence_feature	4236785	4236792	.	-	.	ID=id8996;Note=Sequence duplication around IS insertion;gbkey=misc_feature
AL590842.1	EMBL	repeat_region	4236790	4238743	.	-	.	ID=id8997;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	4236790	4236817	.	+	.	ID=id8998;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	4236856	4237638	.	-	.	ID=gene3726;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO3773
AL590842.1	EMBL	CDS	4236856	4237638	.	-	0	ID=cds3669;Parent=gene3726;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL22360.1;Name=CAL22360.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL22360.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4236931	4237470	.	-	.	ID=id8999;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	4237288	4237311	.	-	.	ID=id9000;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4237635	4238657	.	-	.	ID=gene3727;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO3774
AL590842.1	EMBL	CDS	4237635	4238657	.	-	0	ID=cds3670;Parent=gene3727;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL22361.1;Name=CAL22361.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL22361.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4237779	4238312	.	-	.	ID=id9001;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	sequence_feature	4238541	4238606	.	-	.	ID=id9002;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	4238550	4238633	.	-	.	ID=id9003;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	sequence_feature	4238687	4239097	.	-	.	ID=id9004;Note=Pfam match to entry PF01026 UPF0006%2C Metalloenzyme of unknown function UPF0006%2C score -32.60%2C E-value 1.4e-05;gbkey=misc_feature;inference=protein motif:PF01026
AL590842.1	EMBL	INVERTED	4238716	4238743	.	-	.	ID=id9005;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	4239279	4240055	.	-	.	ID=gene3728;Name=mttB;gbkey=Gene;gene=mttB;gene_biotype=protein_coding;gene_synonym=tatC;locus_tag=YPO3776
AL590842.1	EMBL	CDS	4239279	4240055	.	-	0	ID=cds3671;Parent=gene3728;Dbxref=GOA:Q7CKV0,InterPro:IPR002033,InterPro:IPR019820,UniProtKB/TrEMBL:Q7CKV0,NCBI_GP:CAL22362.1;Name=CAL22362.1;Note=Similar to Escherichia coli Sec-independent protein translocase protein TatC or MttB SW:TATC_ECOLI (P27857) (258 aa) fasta scores: E(): 0%2C 78.3%25 id in 253 aa%2C and to Salmonella typhimurium LT2 TatC protein TR:Q9L6M3 (EMBL:AF233324) (259 aa) fasta scores: E(): 0%2C 77.1%25 id in 249 aa;gbkey=CDS;gene=mttB;inference=similar to sequence:INSDC:AF233324;product=Sec-independent protein translocase protein TatC;protein_id=CAL22362.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4239348	4239413	.	-	.	ID=id9006;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=mttB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4239393	4240004	.	-	.	ID=id9007;Note=Pfam match to entry PF00902 UPF0032%2C MttB family UPF0032%2C score 320.60%2C E-value 1.8e-92;gbkey=misc_feature;gene=mttB;inference=protein motif:PF00902
AL590842.1	EMBL	sequence_feature	4239426	4239476	.	-	.	ID=id9008;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=mttB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4239516	4239581	.	-	.	ID=id9009;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=mttB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4239537	4239596	.	-	.	ID=id9010;Note=PS01218 Uncharacterized protein family UPF0032 signature.;gbkey=misc_feature;gene=mttB;inference=protein motif:ProSite:PS01218
AL590842.1	EMBL	sequence_feature	4239642	4239707	.	-	.	ID=id9011;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=mttB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4239768	4239833	.	-	.	ID=id9012;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=mttB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4239930	4239995	.	-	.	ID=id9013;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=mttB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4240058	4240720	.	-	.	ID=gene3729;Name=mtta2;gbkey=Gene;gene=mtta2;gene_biotype=protein_coding;gene_synonym=tatB;locus_tag=YPO3777
AL590842.1	EMBL	CDS	4240058	4240720	.	-	0	ID=cds3672;Parent=gene3729;Dbxref=GOA:Q8ZAM3,InterPro:IPR003998,InterPro:IPR018448,NCBI_GP:CAL22363.1;Name=CAL22363.1;Note=Similar to Escherichia coli Sec-independent protein translocase protein TatB or Mtta2 SW:TATB_ECOLI (O69415) (171 aa) fasta scores: E(): 7e-30%2C 64.1%25 id in 167 aa%2C and to Salmonella typhimurium Sec-independent protein translocase protein TatB or Stmd1.15 SW:TATB_SALTY (P57048) (182 aa) fasta scores: E(): 1.2e-29%2C 60.6%25 id in 180 aa;gbkey=CDS;gene=mtta2;product=Sec-independent protein translocase protein TatB;protein_id=CAL22363.1;transl_table=11
AL590842.1	EMBL	gene	4240724	4240990	.	-	.	ID=gene3730;Name=b3836;gbkey=Gene;gene=b3836;gene_biotype=protein_coding;gene_synonym=mtta1,tatA;locus_tag=YPO3778
AL590842.1	EMBL	CDS	4240724	4240990	.	-	0	ID=cds3673;Parent=gene3730;Dbxref=GOA:Q8ZAM2,InterPro:IPR003369,InterPro:IPR006312,NCBI_GP:CAL22364.1;Name=CAL22364.1;Note=Similar to Escherichia coli Sec-independent protein translocase protein TatA or Mtta1 or b3836 SW:TATA_ECOLI (O65938) (89 aa) fasta scores: E(): 2.9e-15%2C 65.2%25 id in 92 aa%2C and to Salmonella typhimurium Sec-independent protein translocase protein TatA or Stmd1.16 SW:TATA_SALTY (P57045) (84 aa) fasta scores: E(): 4.5e-15%2C 65.9%25 id in 88 aa;gbkey=CDS;gene=b3836;product=Sec-independent protein translocase protein TatA;protein_id=CAL22364.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4240793	4240981	.	-	.	ID=id9014;Note=Pfam match to entry PF02416 MttA_Hcf106%2C %2C score 37.50%2C E-value 3.1e-07;gbkey=misc_feature;gene=b3836;inference=protein motif:PF02416
AL590842.1	EMBL	sequence_feature	4240928	4240978	.	-	.	ID=id9015;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=b3836;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4241170	4242801	.	-	.	ID=gene3731;Name=aarF;gbkey=Gene;gene=aarF;gene_biotype=protein_coding;locus_tag=YPO3779
AL590842.1	EMBL	CDS	4241170	4242801	.	-	0	ID=cds3674;Parent=gene3731;Dbxref=GOA:Q8ZAM1,InterPro:IPR004147,InterPro:IPR010232,InterPro:IPR011009,NCBI_GP:CAL22365.1;Name=CAL22365.1;Note=Similar to Escherichia coli ubiquinone biosynthesis protein AarF SW:AARF_ECOLI (P27854) (546 aa) fasta scores: E(): 0%2C 80.7%25 id in 545 aa%2C and to Providencia stuartii ubiquinone biosynthesis protein AarF SW:AARF_PROST (O07443) (544 aa) fasta scores: E(): 0%2C 79.5%25 id in 542 aa;gbkey=CDS;gene=aarF;product=ubiquinone biosynthesis protein;protein_id=CAL22365.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4241185	4241250	.	-	.	ID=id9016;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=aarF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4242801	4243433	.	-	.	ID=gene3732;Name=YPO3780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3780
AL590842.1	EMBL	CDS	4242801	4243433	.	-	0	ID=cds3675;Parent=gene3732;Dbxref=InterPro:IPR003033,UniProtKB/TrEMBL:Q0WAN1,NCBI_GP:CAL22366.1;Name=CAL22366.1;Note=Similar to Escherichia coli hypothetical protein YigP SW:YIGP_ECOLI (P27852) (201 aa) fasta scores: E(): 0%2C56.9%25 id in 197 aa%2C and to Salmonella typhimurium LT2 YigP protein TR:Q9L6M5 (EMBL:AF233324) (201 aa) fasta scores: E(): 0%2C 56.9%25 id in 197 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF233324;product=conserved hypothetical protein;protein_id=CAL22366.1;transl_table=11
AL590842.1	EMBL	gene	4243465	4244220	.	-	.	ID=gene3733;Name=ubiE;gbkey=Gene;gene=ubiE;gene_biotype=protein_coding;locus_tag=YPO3781
AL590842.1	EMBL	CDS	4243465	4244220	.	-	0	ID=cds3676;Parent=gene3733;Dbxref=GOA:Q8D1I3,InterPro:IPR004033,InterPro:IPR023576,InterPro:IPR029063,NCBI_GP:CAL22367.1;Name=CAL22367.1;Note=Similar to Escherichia coli ubiquinone/menaquinone biosynthesis methyltransferase UbiE SW:UBIE_ECOLI (P27851) (251 aa) fasta scores: E(): 0%2C 82.9%25 id in 251 aa%2C and to Salmonella typhimurium LT2 UbiE protein TR:Q9L6M6 (EMBL:AF233324) (251 aa) fasta scores: E(): 0%2C 83.7%25 id in 251 aa;gbkey=CDS;gene=ubiE;inference=similar to sequence:INSDC:AF233324;product=ubiquinone/menaquinone biosynthesis methyltransferase;protein_id=CAL22367.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4243471	4244181	.	-	.	ID=id9017;Note=Pfam match to entry PF01209 Ubie_methyltran%2CubiE/COQ5 methyltransferase family%2C score 530.30%2C E-value 1.3e-155;gbkey=misc_feature;gene=ubiE;inference=protein motif:PF01209
AL590842.1	EMBL	sequence_feature	4243705	4243749	.	-	.	ID=id9018;Note=PS01184 ubiE/COQ5 methyltransferase family signature 2.;gbkey=misc_feature;gene=ubiE;inference=protein motif:ProSite:PS01184
AL590842.1	EMBL	sequence_feature	4244068	4244115	.	-	.	ID=id9019;Note=PS01183 ubiE/COQ5 methyltransferase family signature 1.;gbkey=misc_feature;gene=ubiE;inference=protein motif:ProSite:PS01183
AL590842.1	EMBL	gene	4244312	4245745	.	-	.	ID=gene3734;Name=rumC;gbkey=Gene;gene=rumC;gene_biotype=protein_coding;locus_tag=YPO3782
AL590842.1	EMBL	CDS	4244312	4245745	.	-	0	ID=cds3677;Parent=gene3734;Dbxref=GOA:Q8ZAL8,InterPro:IPR003798,NCBI_GP:CAL22368.1;Name=CAL22368.1;Note=Similar to Escherichia coli DNA recombination protein RumC TR:AAG17924 (EMBL:AF300647) (475 aa) fasta scores: E(): 0%2C 70.3%25 id in 431 aa%2C and to Salmonella typhimurium LT2 YigN protein TR:Q9L6M7 (EMBL:AF233324) (476 aa) fasta scores: E(): 0%2C 71.3%25 id in 428 aa;gbkey=CDS;gene=rumC;inference=similar to sequence:INSDC:AF300647;product=putative DNA recombination protein;protein_id=CAL22368.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4244591	4244656	.	-	.	ID=id9020;Note=Predicted helix-turn-helix motif with score 998 (+2.59 SD) at aa 388-409%2C sequence RTITNLWRYEHQSQNAQRIAER;gbkey=misc_feature;gene=rumC
AL590842.1	EMBL	gene	4246025	4246555	.	-	.	ID=gene3735;Name=YPO3783;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3783
AL590842.1	EMBL	CDS	4246025	4246555	.	-	0	ID=cds3678;Parent=gene3735;Dbxref=InterPro:IPR015414,UniProtKB/TrEMBL:Q0WAM8,NCBI_GP:CAL22369.1;Name=CAL22369.1;Note=Similar to the N-terminal regions of Xylella fastidiosa hypothetical protein Xf0277 TR:Q9PGM1 (EMBL:AE003881) (709 aa) fasta scores: E(): 1.2e-17%2C 37.3%25 id in 158 aa%2C and to Escherichia coli hypothetical 28.2 kDa protein in araC-tbpA intergenic region yabI SW:YABI_ECOLI (P30149) (254 aa) fasta scores: E(): 1.3e-17%2C 37.3%25 id in 153 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE003881;product=putative membrane protein;protein_id=CAL22369.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4246028	4246489	.	-	.	ID=id9021;Note=Pfam match to entry PF00597 DedA%2C DedA family%2C score 69.40%2C E-value 7.8e-17;gbkey=misc_feature;inference=protein motif:PF00597
AL590842.1	EMBL	sequence_feature	4246034	4246099	.	-	.	ID=id9022;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4246145	4246210	.	-	.	ID=id9023;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4246307	4246372	.	-	.	ID=id9024;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4246418	4246483	.	-	.	ID=id9025;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4246827	4248644	.	-	.	ID=gene3736;Name=YPO3784;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3784
AL590842.1	EMBL	CDS	4246827	4248644	.	-	0	ID=cds3679;Parent=gene3736;Dbxref=GOA:Q7CKV1,InterPro:IPR003706,InterPro:IPR025299,UniProtKB/TrEMBL:Q7CKV1,NCBI_GP:CAL22370.1;Name=CAL22370.1;Note=Similar to Escherichia coli carbon starvation protein A CstA SW:CSTA_ECOLI (P15078) (701 aa) fasta scores: E(): 0%2C 42.6%25 id in 570 aa%2C and to Bacillus subtilis carbon starvation protein A homolog CstA SW:CSTA_BACSU (P94532) (598 aa) fasta scores: E(): 0%2C 71.1%25 id in 591 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative carbon starvation protein;protein_id=CAL22370.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4246902	4246967	.	-	.	ID=id9026;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4247013	4247078	.	-	.	ID=id9027;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4247100	4247165	.	-	.	ID=id9028;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4247196	4247252	.	-	.	ID=id9029;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4247340	4247405	.	-	.	ID=id9030;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4247592	4247657	.	-	.	ID=id9031;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4247697	4247762	.	-	.	ID=id9032;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4247808	4247873	.	-	.	ID=id9033;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4247913	4247969	.	-	.	ID=id9034;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4248000	4248065	.	-	.	ID=id9035;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4248102	4248158	.	-	.	ID=id9036;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4248189	4248254	.	-	.	ID=id9037;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4248315	4248380	.	-	.	ID=id9038;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4248396	4248461	.	-	.	ID=id9039;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4248567	4248632	.	-	.	ID=id9040;Note=one of 15 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4249002	4249832	.	-	.	ID=gene3737;Name=YPO3785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3785
AL590842.1	EMBL	CDS	4249002	4249832	.	-	0	ID=cds3680;Parent=gene3737;Dbxref=InterPro:IPR025163,InterPro:IPR026893,InterPro:IPR029021,UniProtKB/TrEMBL:Q7CKV2,NCBI_GP:CAL22371.1;Name=CAL22371.1;Note=Similar to Mycobacterium tuberculosis hypothetical protein RV0153c or MTCI5.27c TR:P96830 (EMBL:Z92770) (276 aa) fasta scores: E(): 1.8e-07%2C 26.2%25 id in 279 aa%2C and to Clostridium perfringens protein-tyrosine phosphatase Ptp TR:Q9XDU2 (EMBL:AB028630) (332 aa) fasta scores: E(): 2e-10%2C 31.4%25 id in 271 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z92770;product=conserved hypothetical protein;protein_id=CAL22371.1;transl_table=11
AL590842.1	EMBL	gene	4249953	4250714	.	-	.	ID=gene3738;Name=udp;gbkey=Gene;gene=udp;gene_biotype=protein_coding;locus_tag=YPO3786
AL590842.1	EMBL	CDS	4249953	4250714	.	-	0	ID=cds3681;Parent=gene3738;Dbxref=GOA:Q0WAM5,InterPro:IPR000845,InterPro:IPR010058,InterPro:IPR018016,InterPro:IPR018017,UniProtKB/TrEMBL:Q0WAM5,NCBI_GP:CAL22372.1;Name=CAL22372.1;Note=Similar to Escherichia coli uridine phosphorylase Udp SW:UDP_ECOLI (P12758) (252 aa) fasta scores: E(): 0%2C92.1%25 id in 252 aa%2C and identical to Yersinia pseudotuberculosis uridine phosphorylase Udp TR:Q9K4U2 (EMBL:AJ278525) (253 aa) fasta scores: E(): 0%2C 100.0%25 id in 253 aa;gbkey=CDS;gene=udp;inference=similar to sequence:INSDC:AJ278525;product=uridine phosphorylase;protein_id=CAL22372.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4249968	4250657	.	-	.	ID=id9041;Note=Pfam match to entry PF01048 PNP_UDP_1%2C Phosphorylase family%2C score 371.20%2C E-value 1.1e-107;gbkey=misc_feature;gene=udp;inference=protein motif:PF01048
AL590842.1	EMBL	sequence_feature	4250472	4250519	.	-	.	ID=id9042;Note=PS01232 Purine and other phosphorylases family 1 signature.;gbkey=misc_feature;gene=udp;inference=protein motif:ProSite:PS01232
AL590842.1	EMBL	gene	4251211	4252014	.	+	.	ID=gene3739;Name=YPO3787;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3787
AL590842.1	EMBL	CDS	4251211	4252014	.	+	0	ID=cds3682;Parent=gene3739;Dbxref=GOA:Q8ZAL4,InterPro:IPR002925,InterPro:IPR029058,NCBI_GP:CAL22373.1;Name=CAL22373.1;Note=Similar to Pseudomonas putida%2C and Pseudomonas sp. (strain B13) carboxymethylenebutenolidase ClcD SW:CLCD_PSEPU (P11453) (236 aa) fasta scores: E(): 3.8e-13%2C31.0%25 id in 229 aa%2C and to Escherichia coli putative carboxymethylenebutenolidase YsgA SW:DLHH_ECOLI (P56262) (258 aa) fasta scores: E(): 0%2C 75.4%25 id in 236 aa%2C and to Salmonella typhimurium LT2 DlhH protein TR:Q9L6M9 (EMBL:AF233324) (270 aa) fasta scores: E(): 0%2C 74.1%25 id in 239 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF233324;product=putative carboxymethylenebutenolidase;protein_id=CAL22373.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4251304	4251978	.	+	.	ID=id9043;Note=Pfam match to entry PF01738 DLH%2C Dienelactone hydrolase family%2C score 345.30%2C E-value 6.6e-100;gbkey=misc_feature;inference=protein motif:PF01738
AL590842.1	EMBL	gene	4252069	4254345	.	-	.	ID=gene3740;Name=metE;gbkey=Gene;gene=metE;gene_biotype=protein_coding;locus_tag=YPO3788
AL590842.1	EMBL	CDS	4252069	4254345	.	-	0	ID=cds3683;Parent=gene3740;Dbxref=GOA:Q8ZAL3,InterPro:IPR002629,InterPro:IPR006276,InterPro:IPR013215,NCBI_GP:CAL22374.1;Name=CAL22374.1;Note=Similar to Escherichia coli 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE SW:METE_ECOLI (P25665) (752 aa) fasta scores: E(): 0%2C 85.0%25 id in 753 aa%2C and to Salmonella typhimurium 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE or Stmd1.25 TR:Q9L6N1 (EMBL:AF233324) (754 aa) fasta scores: E(): 0%2C 82.7%25 id in 757 aa;gbkey=CDS;gene=metE;inference=similar to sequence:INSDC:AF233324;product=5-methyltetrahydropteroyltriglutamate--homocyste i ne methyltransferase;protein_id=CAL22374.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4252090	4253061	.	-	.	ID=id9044;Note=Pfam match to entry PF01717 Methionine_synt%2CMethionine synthase%2C vitamin-B12 independent%2C score 767.20%2CE-value 6.5e-227;gbkey=misc_feature;gene=metE;inference=protein motif:PF01717
AL590842.1	EMBL	gene	4254451	4255404	.	+	.	ID=gene3741;Name=metR;gbkey=Gene;gene=metR;gene_biotype=protein_coding;locus_tag=YPO3789
AL590842.1	EMBL	CDS	4254451	4255404	.	+	0	ID=cds3684;Parent=gene3741;Dbxref=GOA:Q7CKV3,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CKV3,NCBI_GP:CAL22375.1;Name=CAL22375.1;Note=Similar to Escherichia coli transcriptional activator protein MetR SW:METR_ECOLI (P19797) (317 aa) fasta scores: E(): 0%2C 88.2%25 id in 314 aa%2C and to Salmonella typhimurium transcriptional activator protein MetR SW:METR_SALTY (P05984) (317 aa) fasta scores: E(): 0%2C 83.9%25 id in 317 aa;gbkey=CDS;gene=metR;product=lysR-family transcriptional regulatory protein;protein_id=CAL22375.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4254460	4254879	.	+	.	ID=id9045;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 154.10%2C E-value 2.4e-42;gbkey=misc_feature;gene=metR;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	4254499	4254564	.	+	.	ID=id9046;Note=Predicted helix-turn-helix motif with score 1683 (+4.92 SD) at aa 17-38%2C sequence GSLAAAATQLHQTQSALSHQFS;gbkey=misc_feature;gene=metR
AL590842.1	EMBL	sequence_feature	4254502	4254594	.	+	.	ID=id9047;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature.;gbkey=misc_feature;gene=metR;inference=protein motif:ProSite:PS00044
AL590842.1	EMBL	gene	4255292	4256191	.	-	.	ID=gene3742;Name=yigM;gbkey=Gene;gene=yigM;gene_biotype=protein_coding;locus_tag=YPO3790
AL590842.1	EMBL	CDS	4255292	4256191	.	-	0	ID=cds3685;Parent=gene3742;Dbxref=GOA:Q0WAM1,InterPro:IPR000620,InterPro:IPR004779,UniProtKB/TrEMBL:Q0WAM1,NCBI_GP:CAL22376.1;Name=CAL22376.1;Note=Similar to Escherichia coli hypothetical 32.4 kDa protein in pldB-metR intergenic region YigM SW:YIGM_ECOLI (P27849) (288 aa) fasta scores: E(): 0%2C 74.9%25 id in 275 aa%2Cand to Salmonella typhimurium LT2 YigM protein TR:Q9L6N3 (EMBL:AF233324) (299 aa) fasta scores: E(): 0%2C 73.4%25 id in 297 aa;gbkey=CDS;gene=yigM;inference=similar to sequence:INSDC:AF233324;product=putative membrane protein;protein_id=CAL22376.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4255361	4255747	.	-	.	ID=id9048;Note=Pfam match to entry PF00892 DUF6%2C Integral membrane protein DUF6%2C score 39.50%2C E-value 7.3e-08;gbkey=misc_feature;gene=yigM;inference=protein motif:PF00892
AL590842.1	EMBL	sequence_feature	4255367	4255417	.	-	.	ID=id9049;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=yigM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4255433	4255498	.	-	.	ID=id9050;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=yigM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4255520	4255585	.	-	.	ID=id9051;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=yigM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4255616	4255681	.	-	.	ID=id9052;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=yigM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4255718	4255783	.	-	.	ID=id9053;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=yigM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4255799	4255855	.	-	.	ID=id9054;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=yigM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4255877	4255942	.	-	.	ID=id9055;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=yigM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4255958	4256023	.	-	.	ID=id9056;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=yigM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4256045	4256101	.	-	.	ID=id9057;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=yigM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4256573	4257499	.	-	.	ID=gene3743;Name=YPO3791;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3791
AL590842.1	EMBL	CDS	4256573	4257499	.	-	0	ID=cds3686;Parent=gene3743;Dbxref=GOA:Q0WAM0,InterPro:IPR004776,UniProtKB/TrEMBL:Q0WAM0,NCBI_GP:CAL22377.1;Name=CAL22377.1;Note=Similar to Oenococcus oeni malate permease MleP TR:Q48797 (EMBL:X82326) (314 aa) fasta scores: E(): 5.7e-11%2C 23.5%25 id in 289 aa%2C and to Rhizobium meliloti putative malonate transporter mdcF SW:MDCF_RHIME (P56949) (320 aa) fasta scores: E(): 1.7e-13%2C 25.3%25 id in 288 aa;gbkey=CDS;inference=similar to sequence:INSDC:X82326;product=putative membrane protein;protein_id=CAL22377.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4256660	4256716	.	-	.	ID=id9058;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4256732	4256797	.	-	.	ID=id9059;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4256819	4256884	.	-	.	ID=id9060;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4256915	4256980	.	-	.	ID=id9061;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4257041	4257106	.	-	.	ID=id9062;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4257122	4257187	.	-	.	ID=id9063;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4257227	4257283	.	-	.	ID=id9064;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4257323	4257373	.	-	.	ID=id9065;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4257413	4257469	.	-	.	ID=id9066;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4257600	4258349	.	-	.	ID=gene3744;Name=ugpQ;gbkey=Gene;gene=ugpQ;gene_biotype=protein_coding;locus_tag=YPO3792
AL590842.1	EMBL	CDS	4257600	4258349	.	-	0	ID=cds3687;Parent=gene3744;Dbxref=GOA:Q7CKV4,InterPro:IPR004129,InterPro:IPR017946,UniProtKB/TrEMBL:Q7CKV4,NCBI_GP:CAL22378.1;Name=CAL22378.1;Note=Similar to Escherichia coli glycerophosphoryl diester phosphodiesterase UgpQ SW:UGPQ_ECOLI (P10908) (247 aa) fasta scores: E(): 0%2C 73.0%25 id in 244 aa%2C and to Alcaligenes eutrophus Orf1 TR:Q44028 (EMBL:X91877) (248 aa) fasta scores: E(): 0%2C 52.5%25 id in 236 aa;gbkey=CDS;gene=ugpQ;inference=similar to sequence:INSDC:X91877;product=glycerophosphoryl diester phosphodiesterase;protein_id=CAL22378.1;transl_table=11
AL590842.1	EMBL	gene	4258346	4259419	.	-	.	ID=gene3745;Name=ugpC;gbkey=Gene;gene=ugpC;gene_biotype=protein_coding;locus_tag=YPO3793
AL590842.1	EMBL	CDS	4258346	4259419	.	-	0	ID=cds3688;Parent=gene3745;Dbxref=GOA:Q74R28,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR008995,InterPro:IPR012340,InterPro:IPR013611,InterPro:IPR017871,InterPro:IPR017922,InterPro:IPR027417,NCBI_GP:CAL22379.1;Name=CAL22379.1;Note=Similar to Escherichia coli sn-glycerol-3-phosphate transport ATP-binding protein UgpC SW:UGPC_ECOLI (P10907) (356 aa) fasta scores: E(): 0%2C 75.8%25 id in 356 aa%2C and to Pseudomonas fluorescens probable mannitol transport ATP-binding protein MtlK TR:O30494 (EMBL:AF007800) (367 aa) fasta scores: E(): 0%2C 51.4%25 id in 356 aa;gbkey=CDS;gene=ugpC;inference=similar to sequence:INSDC:AF007800;product=sn-glycerol-3-phosphate transport%2C ATP-binding protein;protein_id=CAL22379.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4258787	4259332	.	-	.	ID=id9067;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 216.40%2C E-value 4.2e-61;gbkey=misc_feature;gene=ugpC;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	4258973	4259017	.	-	.	ID=id9068;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=ugpC;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	4259288	4259311	.	-	.	ID=id9069;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ugpC;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4259426	4260271	.	-	.	ID=gene3746;Name=ugpE;gbkey=Gene;gene=ugpE;gene_biotype=protein_coding;locus_tag=YPO3794
AL590842.1	EMBL	CDS	4259426	4260271	.	-	0	ID=cds3689;Parent=gene3746;Dbxref=GOA:Q7CKV5,InterPro:IPR000515,NCBI_GP:CAL22380.1;Name=CAL22380.1;Note=Similar to Escherichia coli sn-glycerol-3-phosphate transport system permease protein UgpE SW:UGPE_ECOLI (P10906) (281 aa) fasta scores: E(): 0%2C 77.6%25 id in 281 aa%2Cand to Vibrio cholerae glycerol-3-phosphate ABC transporter%2C permease protein Vc1551 TR:Q9KRT5 (EMBL:AE004233) (280 aa) fasta scores: E(): 0%2C 48.0%25 id in 273 aa;gbkey=CDS;gene=ugpE;inference=similar to sequence:INSDC:AE004233;product=sn-glycerol-3-phosphate transport system%2Cpermease protein;protein_id=CAL22380.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4259456	4259521	.	-	.	ID=id9070;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ugpE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4259543	4259779	.	-	.	ID=id9071;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 65.10%2C E-value 1.5e-15;gbkey=misc_feature;gene=ugpE;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	4259561	4259626	.	-	.	ID=id9072;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ugpE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4259642	4259707	.	-	.	ID=id9073;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ugpE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4259690	4259776	.	-	.	ID=id9074;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;gene=ugpE;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	4259771	4259836	.	-	.	ID=id9075;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ugpE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4259882	4259938	.	-	.	ID=id9076;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ugpE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4259960	4260025	.	-	.	ID=id9077;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ugpE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4260170	4260235	.	-	.	ID=id9078;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=ugpE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4260268	4261155	.	-	.	ID=gene3747;Name=ugpA;gbkey=Gene;gene=ugpA;gene_biotype=protein_coding;locus_tag=YPO3795
AL590842.1	EMBL	CDS	4260268	4261155	.	-	0	ID=cds3690;Parent=gene3747;Dbxref=GOA:Q7CKV6,InterPro:IPR000515,NCBI_GP:CAL22381.1;Name=CAL22381.1;Note=Similar to Escherichia coli sn-glycerol-3-phosphate transport system permease protein UgpA SW:UGPA_ECOLI (P10905) (295 aa) fasta scores: E(): 0%2C 79.3%25 id in 295 aa%2Cand to Vibrio cholerae glycerol-3-phosphate ABC transporter%2C permease protein Vc1550 TR:Q9KRT6 (EMBL:AE004233) (293 aa) fasta scores: E(): 0%2C 46.9%25 id in 290 aa;gbkey=CDS;gene=ugpA;inference=similar to sequence:INSDC:AE004233;product=sn-glycerol-3-phosphate transport system%2Cpermease protein;protein_id=CAL22381.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4260292	4260357	.	-	.	ID=id9079;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=ugpA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4260391	4260618	.	-	.	ID=id9080;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 74.50%2C E-value 2.1e-18;gbkey=misc_feature;gene=ugpA;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	4260472	4260537	.	-	.	ID=id9081;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=ugpA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4260529	4260615	.	-	.	ID=id9082;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;gene=ugpA;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	4260619	4260684	.	-	.	ID=id9083;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=ugpA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4260769	4260834	.	-	.	ID=id9084;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=ugpA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4260874	4260939	.	-	.	ID=id9085;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=ugpA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4261054	4261119	.	-	.	ID=id9086;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=ugpA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4261453	4262772	.	-	.	ID=gene3748;Name=ugpB;gbkey=Gene;gene=ugpB;gene_biotype=protein_coding;locus_tag=YPO3796
AL590842.1	EMBL	CDS	4261453	4262772	.	-	0	ID=cds3691;Parent=gene3748;Dbxref=GOA:Q7CKV7,InterPro:IPR006061,NCBI_GP:CAL22382.1;Name=CAL22382.1;Note=Similar to Escherichia coli glycerol-3-phosphate-binding periplasmic protein precursor UgpB SW:UGPB_ECOLI (P10904) (438 aa) fasta scores: E(): 0%2C80.0%25 id in 434 aa%2C and to Vibrio cholerae glycerol-3-phosphate ABC transporter%2C periplasmic protein Vc1549 TR:Q9KRT7 (EMBL:AE004233) (434 aa) fasta scores: E(): 0%2C 40.7%25 id in 418 aa;gbkey=CDS;gene=ugpB;inference=similar to sequence:INSDC:AE004233;product=glycerol-3-phosphate-binding periplasmic protein;protein_id=CAL22382.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4261507	4262370	.	-	.	ID=id9087;Note=Pfam match to entry PF01547 SBP_bacterial_1%2CBacterial extracellular solute-binding protein%2C score 182.70%2C E-value 6.1e-51;gbkey=misc_feature;gene=ugpB;inference=protein motif:PF01547
AL590842.1	EMBL	sequence_feature	4262296	4262349	.	-	.	ID=id9088;Note=PS01037 Bacterial extracellular solute-binding proteins%2C family 1 signature.;gbkey=misc_feature;gene=ugpB;inference=protein motif:ProSite:PS01037
AL590842.1	EMBL	gene	4263327	4263818	.	+	.	ID=gene3749;Name=YPO3797;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3797
AL590842.1	EMBL	CDS	4263327	4263818	.	+	0	ID=cds3692;Parent=gene3749;Dbxref=GOA:Q7CKV8,InterPro:IPR007540,UniProtKB/TrEMBL:Q7CKV8,NCBI_GP:CAL22383.1;Name=CAL22383.1;Note=Similar to Escherichia coli colonization factor antigen 1 TR:AAB30543 (EMBL:S73191) (170 aa) fasta scores: E(): 0.69%2C 27.4%25 id in 168 aa%2C and to Salmonella typhi%2C and Salmonella enterica TsaB or TcfB TR:Q9XDS3 (EMBL:AB029403) (191 aa) fasta scores: E(): 1.9%2C 28.8%25 id in 118 aa;gbkey=CDS;inference=similar to sequence:INSDC:S73191;product=putative exported protein;protein_id=CAL22383.1;transl_table=11
AL590842.1	EMBL	gene	4264085	4266418	.	+	.	ID=gene3750;Name=YPO3798;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3798
AL590842.1	EMBL	CDS	4264085	4266418	.	+	0	ID=cds3693;Parent=gene3750;Dbxref=UniProtKB/TrEMBL:Q0WAL3,NCBI_GP:CAL22384.1;Name=CAL22384.1;Note=Similar to Escherichia coli hypothetical 90.3 kDa protein precursor TR:O52984 (EMBL:AJ224079) (814 aa) fasta scores: E(): 0.00089%2C 21.8%25 id in 685 aa%2C and to Escherichia coli cfa/I fimbrial subunit C precursor CfaC SW:CFAC_ECOLI (P25733) (869 aa) fasta scores: E(): 0.043%2C22.0%25 id in 824 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ224079;product=putative exported protein;protein_id=CAL22384.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4264574	4264597	.	+	.	ID=id9089;Note=PS00030 Eukaryotic putative RNA-binding region RNP-1 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00030
AL590842.1	EMBL	gene	4266436	4267122	.	+	.	ID=gene3751;Name=YPO3799;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3799
AL590842.1	EMBL	CDS	4266436	4267122	.	+	0	ID=cds3694;Parent=gene3751;Dbxref=GOA:Q0WAL2,InterPro:IPR008962,InterPro:IPR016147,UniProtKB/TrEMBL:Q0WAL2,NCBI_GP:CAL22385.1;Name=CAL22385.1;Note=Similar to Escherichia coli CFA/I fimbrial subunit A precursor CfaA SW:CFAA_ECOLI (P25732) (206 aa) fasta scores: E(): 0.00026%2C 26.1%25 id in 153 aa%2C and to Escherichia coli Cs1 fimbrial subunit B precursor CsoB or CooB SW:CSOB_ECOLI (P25731) (238 aa) fasta scores: E(): 0.00087%2C 22.4%25 id in 219 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL22385.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4266994	4267017	.	+	.	ID=id9090;Note=PS00687 Aldehyde dehydrogenases glutamic acid active site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00687
AL590842.1	EMBL	gene	4267094	4267741	.	+	.	ID=gene3752;Name=YPO3800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3800
AL590842.1	EMBL	CDS	4267094	4267741	.	+	0	ID=cds3695;Parent=gene3752;Dbxref=UniProtKB/TrEMBL:Q0WAL1,NCBI_GP:CAL22386.1;Name=CAL22386.1;Note=Similar to Escherichia coli CFA/I fimbrial subunit A precursor CfaA SW:CFAA_ECOLI (P25732) (206 aa) fasta scores: E(): 0.00014%2C 28.0%25 id in 189 aa%2C and to Escherichia coli Cs1 fimbrial subunit B precursor CsoB or CooB SW:CSOB_ECOLI (P25731) (238 aa) fasta scores: E(): 0.0028%2C 26.6%25 id in 173 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL22386.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4267094	4267147	.	+	.	ID=id9091;Note=Predicted N-terminal signal sequence (probabilty 0.992) with cleavage site between residues 18 and 19;gbkey=misc_feature
AL590842.1	EMBL	gene	4267803	4268321	.	+	.	ID=gene3753;Name=YPO3801;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3801
AL590842.1	EMBL	CDS	4267803	4268321	.	+	0	ID=cds3696;Parent=gene3753;Dbxref=UniProtKB/TrEMBL:Q7CKV9,NCBI_GP:CAL22387.1;Name=CAL22387.1;Note=Similar to Escherichia coli colonization factor antigen 1 TR:AAB30543 (EMBL:S73191) (170 aa) fasta scores: E(): 3.6%2C 22.3%25 id in 175 aa%2C and to Escherichia coli CFA/I fimbrial subunit B precursor CfaB SW:FMC1_ECOLI (P02971) (170 aa) fasta scores: E(): 4.2%2C 22.3%25 id in 175 aa;gbkey=CDS;inference=similar to sequence:INSDC:S73191;product=putative exported protein;protein_id=CAL22387.1;transl_table=11
AL590842.1	EMBL	gene	4268434	4269540	.	+	.	ID=gene3754;Name=YPO3802;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3802
AL590842.1	EMBL	CDS	4268434	4269540	.	+	0	ID=cds3697;Parent=gene3754;Dbxref=UniProtKB/TrEMBL:Q7CKW0,NCBI_GP:CAL22388.1;Name=CAL22388.1;Note=no significant database matches;gbkey=CDS;product=putative exported protein;protein_id=CAL22388.1;transl_table=11
AL590842.1	EMBL	gene	4269655	4270116	.	-	.	ID=gene3755;Name=YPO3803;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3803
AL590842.1	EMBL	CDS	4269655	4270116	.	-	0	ID=cds3698;Parent=gene3755;Dbxref=UniProtKB/TrEMBL:Q7CKW1,NCBI_GP:CAL22389.1;Name=CAL22389.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22389.1;transl_table=11
AL590842.1	EMBL	gene	4270344	4271045	.	-	.	ID=gene3756;Name=livF;gbkey=Gene;gene=livF;gene_biotype=protein_coding;locus_tag=YPO3804
AL590842.1	EMBL	CDS	4270344	4271045	.	-	0	ID=cds3699;Parent=gene3756;Dbxref=GOA:Q0WAK7,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WAK7,NCBI_GP:CAL22390.1;Name=CAL22390.1;Note=Similar to Escherichia coli high-affinity branched-chain amino acid transport ATP-binding protein LivF SW:LIVF_ECOLI (P22731) (237 aa) fasta scores: E(): 0%2C87.1%25 id in 233 aa%2C and to Salmonella typhimurium high-affinity branched-chain amino acid transport ATP-binding protein LivF or LivG SW:LIVF_SALTY (P30294) (237 aa) fasta scores: E(): 0%2C 85.8%25 id in 233 aa;gbkey=CDS;gene=livF;product=high-affinity branched-chain amino acid transport%2C ATP-binding protein;protein_id=CAL22390.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4270419	4270967	.	-	.	ID=id9092;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 197.80%2C E-value 1.7e-55;gbkey=misc_feature;gene=livF;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	4270602	4270646	.	-	.	ID=id9093;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=livF;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	4270923	4270946	.	-	.	ID=id9094;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=livF;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4271090	4271857	.	-	.	ID=gene3757;Name=livG;gbkey=Gene;gene=livG;gene_biotype=protein_coding;locus_tag=YPO3805
AL590842.1	EMBL	CDS	4271090	4271857	.	-	0	ID=cds3700;Parent=gene3757;Dbxref=GOA:Q7CKW2,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CKW2,NCBI_GP:CAL22391.1;Name=CAL22391.1;Note=Similar to Escherichia coli high-affinity branched-chain amino acid transport ATP-binding protein LivG SW:LIVG_ECOLI (P22730) (255 aa) fasta scores: E(): 0%2C82.1%25 id in 252 aa%2C and to Salmonella typhimurium high-affinity branched-chain amino acid transport ATP-binding protein LivG or LivF SW:LIVG_SALTY (P30293) (255 aa) fasta scores: E(): 0%2C 83.3%25 id in 252 aa;gbkey=CDS;gene=livG;product=high-affinity branched-chain amino acid transport%2C ATP-binding protein;protein_id=CAL22391.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4271165	4271764	.	-	.	ID=id9095;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 225.10%2C E-value 1e-63;gbkey=misc_feature;gene=livG;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	4271351	4271395	.	-	.	ID=id9096;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=livG;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	4271720	4271743	.	-	.	ID=id9097;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=livG;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4271854	4273140	.	-	.	ID=gene3758;Name=livM;gbkey=Gene;gene=livM;gene_biotype=protein_coding;locus_tag=YPO3806
AL590842.1	EMBL	CDS	4271854	4273140	.	-	0	ID=cds3701;Parent=gene3758;Dbxref=GOA:Q7CKW3,InterPro:IPR001851,InterPro:IPR021807,UniProtKB/TrEMBL:Q7CKW3,NCBI_GP:CAL22392.1;Name=CAL22392.1;Note=Similar to Escherichia coli high-affinity branched-chain amino acid transport system permease protein LivM SW:LIVM_ECOLI (P22729) (425 aa) fasta scores: E(): 0%2C79.4%25 id in 428 aa%2C and to Salmonella typhimurium high-affinity branched-chain amino acid transport system permease protein LivM or LivE SW:LIVM_SALTY (P30296) (425 aa) fasta scores: E(): 0%2C 78.7%25 id in 428 aa;gbkey=CDS;gene=livM;inference=protein motif:TMHMM:2.0;product=high-affinity branched-chain amino acid transport system%2C permease protein;protein_id=CAL22392.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4272019	4272084	.	-	.	ID=id9098;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=livM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4272130	4272195	.	-	.	ID=id9099;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=livM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4272292	4272357	.	-	.	ID=id9100;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=livM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4272511	4272561	.	-	.	ID=id9101;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=livM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4272583	4272648	.	-	.	ID=id9102;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=livM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4272661	4272726	.	-	.	ID=id9103;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=livM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4272733	4272798	.	-	.	ID=id9104;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=livM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4272811	4272867	.	-	.	ID=id9105;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=livM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4272946	4273011	.	-	.	ID=id9106;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=livM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4273057	4273119	.	-	.	ID=id9107;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=livM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4273137	4274063	.	-	.	ID=gene3759;Name=livH;gbkey=Gene;gene=livH;gene_biotype=protein_coding;locus_tag=YPO3807
AL590842.1	EMBL	CDS	4273137	4274063	.	-	0	ID=cds3702;Parent=gene3759;Dbxref=GOA:Q7CKW4,InterPro:IPR001851,UniProtKB/TrEMBL:Q7CKW4,NCBI_GP:CAL22393.1;Name=CAL22393.1;Note=Similar to Escherichia coli high-affinity branched-chain amino acid transport system permease protein LivH SW:LIVH_ECOLI (P08340) (308 aa) fasta scores: E(): 0%2C86.7%25 id in 308 aa%2C and to Salmonella typhimurium high-affinity branched-chain amino acid transport system permease protein LivH or LivA SW:LIVH_SALTY (P30295) (308 aa) fasta scores: E(): 0%2C 87.7%25 id in 308 aa;gbkey=CDS;gene=livH;inference=protein motif:TMHMM:2.0;product=high-affinity branched-chain amino acid transport system%2C permease protein;protein_id=CAL22393.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4273161	4273217	.	-	.	ID=id9108;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=livH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4273266	4273331	.	-	.	ID=id9109;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=livH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4273377	4273442	.	-	.	ID=id9110;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=livH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4273539	4273604	.	-	.	ID=id9111;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=livH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4273683	4273748	.	-	.	ID=id9112;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=livH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4273788	4273853	.	-	.	ID=id9113;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=livH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4273866	4273931	.	-	.	ID=id9114;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=livH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4273953	4274018	.	-	.	ID=id9115;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=livH;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4274244	4275359	.	-	.	ID=gene3760;Name=livJ;gbkey=Gene;gene=livJ;gene_biotype=protein_coding;gene_synonym=livK;locus_tag=YPO3808
AL590842.1	EMBL	CDS	4274244	4275359	.	-	0	ID=cds3703;Parent=gene3760;Dbxref=GOA:Q0WAK3,InterPro:IPR000709,InterPro:IPR028081,InterPro:IPR028082,UniProtKB/TrEMBL:Q0WAK3,NCBI_GP:CAL22394.1;Name=CAL22394.1;Note=Similar to Escherichia coli leucine-specific binding protein precursor LivK SW:LIVK_ECOLI (P04816) (369 aa) fasta scores: E(): 0%2C 74.5%25 id in 365 aa%2C and to Escherichia coli leu/ile/val-binding protein precursor LivJ SW:LIVJ_ECOLI (P02917) (367 aa) fasta scores: E(): 0%2C 74.2%25 id in 368 aa;gbkey=CDS;gene=livJ;product=branched-chain amino acid-binding protein;protein_id=CAL22394.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4274250	4275314	.	-	.	ID=id9116;Note=Pfam match to entry PF01094 ANF_receptor%2C Receptor family ligand binding region%2C score 79.30%2C E-value 8.1e-20;gbkey=misc_feature;gene=livJ;inference=protein motif:PF01094
AL590842.1	EMBL	gene	4275781	4276173	.	+	.	ID=gene3761;Name=yhhK;gbkey=Gene;gene=yhhK;gene_biotype=protein_coding;locus_tag=YPO3809
AL590842.1	EMBL	CDS	4275781	4276173	.	+	0	ID=cds3704;Parent=gene3761;Dbxref=GOA:Q0WAK2,InterPro:IPR000182,InterPro:IPR016181,InterPro:IPR024612,UniProtKB/TrEMBL:Q0WAK2,NCBI_GP:CAL22395.1;Name=CAL22395.1;Note=Similar to Escherichia coli hypothetical 14.5 kDa protein in livK-livJ intergenic region YhhK SW:YHHK_ECOLI (P37613) (127 aa) fasta scores: E(): 2.8e-20%2C 46.9%25 id in 130 aa%2C and to Pseudomonas aeruginosa hypothetical protein Pa5144 TR:AAG08529 (EMBL:AE004927) (132 aa) fasta scores: E(): 0.00062%2C 39.2%25 id in 102 aa;gbkey=CDS;gene=yhhK;inference=similar to sequence:INSDC:AE004927;product=putative acetyltransferase;protein_id=CAL22395.1;transl_table=11
AL590842.1	EMBL	repeat_region	4276311	4277021	.	-	.	ID=id9117;Note=Contains a 'G' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	4276419	4276877	.	-	.	ID=gene3762;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO3810
AL590842.1	EMBL	CDS	4276419	4276877	.	-	0	ID=cds3705;Parent=gene3762;Dbxref=GOA:Q74YM6,InterPro:IPR002686,UniProtKB/TrEMBL:Q74YM6,NCBI_GP:CAL22396.1;Name=CAL22396.1;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL22396.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4276512	4276823	.	-	.	ID=id9118;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 236.10%2C E-value 5.1e-67;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	4277091	4277948	.	-	.	ID=gene3763;Name=fam;gbkey=Gene;gene=fam;gene_biotype=protein_coding;gene_synonym=hin,htpR,rpoH;locus_tag=YPO3811
AL590842.1	EMBL	CDS	4277091	4277948	.	-	0	ID=cds3706;Parent=gene3763;Dbxref=GOA:Q7CKW6,InterPro:IPR000943,InterPro:IPR007627,InterPro:IPR007630,InterPro:IPR009042,InterPro:IPR011991,InterPro:IPR012759,InterPro:IPR013324,InterPro:IPR013325,InterPro:IPR014284,UniProtKB/TrEMBL:Q7CKW6,NCBI_GP:CAL22397.1;Name=CAL22397.1;Note=Similar to Escherichia coli RNA polymerase sigma-32 factor RpoH or HtpR or Hin or Fam SW:RP32_ECOLI (P00580) (284 aa) fasta scores: E(): 0%2C 83.9%25 id in 285 aa%2C and to Serratia marcescens RNA polymerase sigma-32 factor RpoH SW:RP32_SERMA (P50510) (285 aa) fasta scores: E(): 0%2C 95.4%25 id in 285 aa;gbkey=CDS;gene=fam;product=RNA polymerase sigma-32 factor;protein_id=CAL22397.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4277106	4277810	.	-	.	ID=id9119;Note=Pfam match to entry PF00140 sigma70%2C Sigma-70 factor%2C score 343.20%2C E-value 2.8e-99;gbkey=misc_feature;gene=fam;inference=protein motif:PF00140
AL590842.1	EMBL	sequence_feature	4277112	4277192	.	-	.	ID=id9120;Note=PS00716 Sigma-70 factors family signature 2.;gbkey=misc_feature;gene=fam;inference=protein motif:ProSite:PS00716
AL590842.1	EMBL	sequence_feature	4277130	4277195	.	-	.	ID=id9121;Note=Predicted helix-turn-helix motif with score 2068 (+6.23 SD) at aa 252-273%2C sequence STLQELADQYGVSAERVRQLEK;gbkey=misc_feature;gene=fam
AL590842.1	EMBL	sequence_feature	4277679	4277720	.	-	.	ID=id9122;Note=PS00715 Sigma-70 factors family signature 1.;gbkey=misc_feature;gene=fam;inference=protein motif:ProSite:PS00715
AL590842.1	EMBL	gene	4278259	4279212	.	-	.	ID=gene3764;Name=ftsS;gbkey=Gene;gene=ftsS;gene_biotype=protein_coding;gene_synonym=ftsX;locus_tag=YPO3812
AL590842.1	EMBL	CDS	4278259	4279212	.	-	0	ID=cds3707;Parent=gene3764;Dbxref=GOA:Q7CKW7,InterPro:IPR003838,InterPro:IPR004513,UniProtKB/TrEMBL:Q7CKW7,NCBI_GP:CAL22398.1;Name=CAL22398.1;Note=Similar to Escherichia coli cell division protein FtsX or FtsS SW:FTSX_ECOLI (P10122) (352 aa) fasta scores: E(): 0%2C 74.2%25 id in 299 aa%2C and to Haemophilus influenzae cell division protein FtsX homolog Hi0770 SW:FTSX_HAEIN (P44872) (310 aa) fasta scores: E(): 0%2C 43.2%25 id in 292 aa;gbkey=CDS;gene=ftsS;inference=protein motif:TMHMM:2.0;product=cell division protein;protein_id=CAL22398.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4278289	4278345	.	-	.	ID=id9123;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=ftsS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4278451	4278516	.	-	.	ID=id9124;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=ftsS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4278580	4278645	.	-	.	ID=id9125;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=ftsS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4279033	4279098	.	-	.	ID=id9126;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=ftsS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4279202	4279870	.	-	.	ID=gene3765;Name=ftsE;gbkey=Gene;gene=ftsE;gene_biotype=protein_coding;locus_tag=YPO3813
AL590842.1	EMBL	CDS	4279202	4279870	.	-	0	ID=cds3708;Parent=gene3765;Dbxref=GOA:Q7CKW8,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR005286,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CKW8,NCBI_GP:CAL22399.1;Name=CAL22399.1;Note=Similar to Escherichia coli cell division ATP-binding protein FtsE SW:FTSE_ECOLI (P10115) (222 aa) fasta scores: E(): 0%2C 89.9%25 id in 217 aa%2C and to Vibrio cholerae cell division ATP-binding protein FtsE or Vc0148 TR:Q9KVJ5 (EMBL:AE004104) (233 aa) fasta scores: E(): 0%2C70.0%25 id in 217 aa;gbkey=CDS;gene=ftsE;inference=similar to sequence:INSDC:AE004104;product=cell division ATP-binding protein;protein_id=CAL22399.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4279232	4279789	.	-	.	ID=id9127;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 235.70%2C E-value 6.4e-67;gbkey=misc_feature;gene=ftsE;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	4279415	4279459	.	-	.	ID=id9128;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=ftsE;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	4279745	4279768	.	-	.	ID=id9129;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ftsE;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4279876	4281501	.	-	.	ID=gene3766;Name=ftsY;gbkey=Gene;gene=ftsY;gene_biotype=protein_coding;locus_tag=YPO3814
AL590842.1	EMBL	CDS	4279876	4281501	.	-	0	ID=cds3709;Parent=gene3766;Dbxref=GOA:Q0WAJ7,InterPro:IPR000897,InterPro:IPR003593,InterPro:IPR004390,InterPro:IPR013822,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WAJ7,NCBI_GP:CAL22400.1;Name=CAL22400.1;Note=Similar to Escherichia coli cell division protein FtsY SW:FTSY_ECOLI (P10121) (497 aa) fasta scores: E(): 0%2C63.7%25 id in 543 aa%2C and to Vibrio cholerae cell division protein FtsY or Vc0147 TR:Q9KVJ6 (EMBL:AE004104) (391 aa) fasta scores: E(): 0%2C 68.8%25 id in 382 aa;gbkey=CDS;gene=ftsY;inference=similar to sequence:INSDC:AE004104;product=cell division protein;protein_id=CAL22400.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4279891	4280700	.	-	.	ID=id9130;Note=Pfam match to entry PF00448 SRP54%2C SRP54-type protein%2C score 486.70%2C E-value 1.8e-142;gbkey=misc_feature;gene=ftsY;inference=protein motif:PF00448
AL590842.1	EMBL	sequence_feature	4279930	4279971	.	-	.	ID=id9131;Note=PS00300 SRP54-type proteins GTP-binding domain signature.;gbkey=misc_feature;gene=ftsY;inference=protein motif:ProSite:PS00300
AL590842.1	EMBL	sequence_feature	4280449	4280472	.	-	.	ID=id9132;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ftsY;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4281530	4281673	.	+	.	ID=gene3767;Name=YPO3815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3815
AL590842.1	EMBL	CDS	4281530	4281673	.	+	0	ID=cds3710;Parent=gene3767;Dbxref=UniProtKB/TrEMBL:Q74R50,NCBI_GP:CAL22401.1;Name=CAL22401.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22401.1;transl_table=11
AL590842.1	EMBL	gene	4281783	4282445	.	+	.	ID=gene3768;Name=YPO3816;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3816
AL590842.1	EMBL	CDS	4281783	4282445	.	+	0	ID=cds3711;Parent=gene3768;Dbxref=GOA:Q7CKW9,InterPro:IPR002052,InterPro:IPR004398,InterPro:IPR029063,UniProtKB/TrEMBL:Q7CKW9,NCBI_GP:CAL22402.1;Name=CAL22402.1;Note=Similar to Escherichia coli hypothetical protein YhhF SW:YHHF_ECOLI (P10120) (198 aa) fasta scores: E(): 0%2C70.0%25 id in 190 aa%2C and to Vibrio cholerae hypothetical protein VC0146 vc0146 TR:Q9KVJ7 (EMBL:AE004104) (199 aa) fasta scores: E(): 0%2C 57.4%25 id in 190 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004104;product=conserved hypothetical protein;protein_id=CAL22402.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4282185	4282205	.	+	.	ID=id9133;Note=PS00092 N-6 Adenine-specific DNA methylases signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00092
AL590842.1	EMBL	gene	4282435	4282707	.	+	.	ID=gene3769;Name=yhhL;gbkey=Gene;gene=yhhL;gene_biotype=protein_coding;locus_tag=YPO3816a
AL590842.1	EMBL	CDS	4282435	4282707	.	+	0	ID=cds3712;Parent=gene3769;Dbxref=InterPro:IPR009525,UniProtKB/TrEMBL:Q7CKX0,NCBI_GP:CAL22403.1;Name=CAL22403.1;Note=Similar to Escherichia coli hypothetical protein YhhL SW:YHHL_ECOLI (P37614) (89 aa) fasta scores: E(): 6.6e-21%2C 64.3%25 id in 84 aa%2C and to Vibrio cholerae hypothetical protein VC0145 TR:Q9KVJ8 (EMBL:AE004104) (88 aa) fasta scores: E(): 2.3e-05%2C 26.5%25 id in 83 aa;gbkey=CDS;gene=yhhL;inference=similar to sequence:INSDC:AE004104;product=putative membrane protein;protein_id=CAL22403.1;transl_table=11
AL590842.1	EMBL	gene	4282894	4283313	.	-	.	ID=gene3770;Name=YPO3817;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3817
AL590842.1	EMBL	CDS	4282894	4283313	.	-	0	ID=cds3713;Parent=gene3770;Dbxref=InterPro:IPR019635,UniProtKB/TrEMBL:Q7CKX1,NCBI_GP:CAL22404.1;Name=CAL22404.1;Note=Similar to Escherichia coli hypothetical protein YhhM SW:YHHM_ECOLI (P37615) (119 aa) fasta scores: E(): 2.5e-08%2C 35.8%25 id in 134 aa. CDS contains and insert%2Cresidues 86 to 103%2C relative to the E. coli protein.;gbkey=CDS;product=putative membrane protein;protein_id=CAL22404.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4283251	4283301	.	-	.	ID=id9134;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4283525	4283845	.	-	.	ID=gene3771;Name=YPO3818;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3818
AL590842.1	EMBL	CDS	4283525	4283845	.	-	0	ID=cds3714;Parent=gene3771;Dbxref=InterPro:IPR014949,UniProtKB/TrEMBL:Q7CKX2,NCBI_GP:CAL22405.1;Name=CAL22405.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA3979 TR:AAG07366 (EMBL:AE004816) (110 aa) fasta scores: E(): 5.8e-17%2C 45.6%25 id in 103 aa%2C and to Xylella fastidiosa hypothetical protein XF1055 TR:Q9PEH3 (EMBL:AE003942) (106 aa) fasta scores: E(): 1.8e-13%2C 41.3%25 id in 104 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004816;product=conserved hypothetical protein;protein_id=CAL22405.1;transl_table=11
AL590842.1	EMBL	gene	4284135	4284761	.	+	.	ID=gene3772;Name=yhhN;gbkey=Gene;gene=yhhN;gene_biotype=protein_coding;locus_tag=YPO3819
AL590842.1	EMBL	CDS	4284135	4284761	.	+	0	ID=cds3715;Parent=gene3772;Dbxref=GOA:Q7CKX3,InterPro:IPR012506,UniProtKB/TrEMBL:Q7CKX3,NCBI_GP:CAL22406.1;Name=CAL22406.1;Note=Similar to Escherichia coli hypothetical protein YhhN SW:YHHN_ECOLI (P37616) (208 aa) fasta scores: E(): 0%2C66.8%25 id in 208 aa%2C and to Vibrio cholerae hypothetical protein VCA0703 TR:Q9KLP0 (EMBL:AE004400) (229 aa) fasta scores: E(): 2.1e-13%2C 29.9%25 id in 187 aa;gbkey=CDS;gene=yhhN;inference=similar to sequence:INSDC:AE004400;product=putative membrane protein;protein_id=CAL22406.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4284279	4284347	.	+	.	ID=id9135;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhhN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4284360	4284419	.	+	.	ID=id9136;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhhN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4284432	4284500	.	+	.	ID=id9137;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhhN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4284519	4284575	.	+	.	ID=id9138;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhhN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4284603	4284662	.	+	.	ID=id9139;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhhN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4284699	4284755	.	+	.	ID=id9140;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhhN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4285175	4287541	.	+	.	ID=gene3773;Name=YPO3820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3820
AL590842.1	EMBL	CDS	4285175	4287541	.	+	0	ID=cds3716;Parent=gene3773;Dbxref=GOA:Q74R56,InterPro:IPR001757,InterPro:IPR006121,InterPro:IPR008250,InterPro:IPR017969,InterPro:IPR018303,InterPro:IPR023214,InterPro:IPR023299,InterPro:IPR027256,UniProtKB/TrEMBL:Q74R56,NCBI_GP:CAL22407.1;Name=CAL22407.1;Note=Similar to Proteus mirabilis putative P-type cation-translocating membrane ATPase PpaA TR:O33448 (EMBL:AJ001437) (692 aa) fasta scores: E(): 0%2C 66.3%25 id in 698 aa%2C and to Escherichia coli zinc-transporting ATPase ZntA SW:ATZN_ECOLI (P37617) (732 aa) fasta scores: E(): 0%2C64.9%25 id in 709 aa. Possible alternative translational start sites;gbkey=CDS;inference=similar to sequence:INSDC:AJ001437;product=putative P-type cation-translocating membrane ATPase;protein_id=CAL22407.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4285424	4285615	.	+	.	ID=id9141;Note=Pfam match to entry PF00403 HMA%2CHeavy-metal-associated domain%2C score 55.00%2C E-value 3.2e-14;gbkey=misc_feature;inference=protein motif:PF00403
AL590842.1	EMBL	sequence_feature	4285436	4285525	.	+	.	ID=id9142;Note=PS01047 Heavy-metal-associated domain.;gbkey=misc_feature;inference=protein motif:ProSite:PS01047
AL590842.1	EMBL	sequence_feature	4285670	4285729	.	+	.	ID=id9143;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4285748	4285816	.	+	.	ID=id9144;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4285859	4285927	.	+	.	ID=id9145;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4285901	4286566	.	+	.	ID=id9146;Note=Pfam match to entry PF00122 E1-E2_ATPase%2C E1-E2 ATPase%2C score 291.40%2C E-value 2.6e-87;gbkey=misc_feature;inference=protein motif:PF00122
AL590842.1	EMBL	sequence_feature	4286336	4286404	.	+	.	ID=id9147;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4286447	4286515	.	+	.	ID=id9148;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4286594	4286614	.	+	.	ID=id9149;Note=PS00154 E1-E2 ATPases phosphorylation site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00154
AL590842.1	EMBL	sequence_feature	4287404	4287472	.	+	.	ID=id9150;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4287467	4287502	.	+	.	ID=id9151;Note=PS00141 Eukaryotic and viral aspartyl proteases active site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00141
AL590842.1	EMBL	gene	4287625	4287879	.	-	.	ID=gene3774;Name=YPO3821;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3821
AL590842.1	EMBL	CDS	4287625	4287879	.	-	0	ID=cds3717;Parent=gene3774;Dbxref=GOA:Q8ZAI0,InterPro:IPR001455,InterPro:IPR022931,NCBI_GP:CAL22408.1;Name=CAL22408.1;Note=Similar to Escherichia coli hypothetical protein YhhP SW:YHHP_ECOLI (P37618) (81 aa) fasta scores: E(): 2e-24%2C 77.5%25 id in 80 aa%2C and to Vibrio cholerae hypothetical protein VC0024 TR:Q9KVW4 (EMBL:AE004094) (82 aa) fasta scores: E(): 1e-18%2C 65.4%25 id in 78 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004094;product=conserved hypothetical protein;protein_id=CAL22408.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4287643	4287864	.	-	.	ID=id9152;Note=Pfam match to entry PF01206 UPF0033%2C Uncharacterized protein family UPF0033%2C score 140.50%2C E-value 2.9e-38;gbkey=misc_feature;inference=protein motif:PF01206
AL590842.1	EMBL	sequence_feature	4287808	4287846	.	-	.	ID=id9153;Note=PS01148 Uncharacterized protein family UPF0033 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01148
AL590842.1	EMBL	gene	4288163	4288831	.	+	.	ID=gene3775;Name=yhhQ;gbkey=Gene;gene=yhhQ;gene_biotype=protein_coding;locus_tag=YPO3822
AL590842.1	EMBL	CDS	4288163	4288831	.	+	0	ID=cds3718;Parent=gene3775;Dbxref=InterPro:IPR003744,UniProtKB/TrEMBL:Q0WAI8,NCBI_GP:CAL22409.1;Name=CAL22409.1;Note=Similar to Escherichia coli hypothetical protein YhhQ SW:YHHQ_ECOLI (P37619) (221 aa) fasta scores: E(): 0%2C74.2%25 id in 213 aa%2C and to Vibrio cholerae hypothetical protein VC2706 TR:Q9KNM6 (EMBL:AE004336) (223 aa) fasta scores: E(): 0%2C 69.1%25 id in 207 aa;gbkey=CDS;gene=yhhQ;inference=similar to sequence:INSDC:AE004336;product=putative membrane protein;protein_id=CAL22409.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4288193	4288261	.	+	.	ID=id9154;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhhQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4288289	4288357	.	+	.	ID=id9155;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhhQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4288376	4288435	.	+	.	ID=id9156;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhhQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4288478	4288537	.	+	.	ID=id9157;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhhQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4288574	4288642	.	+	.	ID=id9158;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhhQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4288700	4288768	.	+	.	ID=id9159;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhhQ;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4288961	4289488	.	+	.	ID=gene3776;Name=dcrB;gbkey=Gene;gene=dcrB;gene_biotype=protein_coding;locus_tag=YPO3823
AL590842.1	EMBL	CDS	4288961	4289488	.	+	0	ID=cds3719;Parent=gene3776;Dbxref=UniProtKB/TrEMBL:Q7CKX4,NCBI_GP:CAL22410.1;Name=CAL22410.1;Note=Similar to Escherichia coli hypothetical protein DcrB TR:P76699 (EMBL:U00039) (203 aa) fasta scores: E(): 1.1e-32%2C 55.4%25 id in 184 aa. CDS is truncated at the N-terminus and contains an 11 amino acid deletion at residue 25%2C relative to the E. coli protein;gbkey=CDS;gene=dcrB;inference=similar to sequence:INSDC:U00039;product=putative lipoprotein;protein_id=CAL22410.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4288991	4289023	.	+	.	ID=id9160;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=dcrB;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	4289650	4290897	.	-	.	ID=gene3777;Name=glpC;gbkey=Gene;gene=glpC;gene_biotype=protein_coding;locus_tag=YPO3824
AL590842.1	EMBL	CDS	4289650	4290897	.	-	0	ID=cds3720;Parent=gene3777;Dbxref=GOA:Q0WAI6,InterPro:IPR004017,InterPro:IPR009051,InterPro:IPR017753,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:Q0WAI6,NCBI_GP:CAL22411.1;Name=CAL22411.1;Note=Similar to Escherichia coli anaerobic glycerol-3-phosphate dehydrogenase subunit C protein GlpC SW:GLPC_ECOLI (P13034) (396 aa) fasta scores: E(): 0%2C 72.9%25 id in 406 aa%2C and to Haemophilus influenzae anaerobic glycerol-3-phosphate dehydrogenase subunit C protein GlpC SW:GLPC_HAEIN (P43801) (426 aa) fasta scores: E(): 0%2C 57.4%25 id in 411 aa;gbkey=CDS;gene=glpC;product=anaerobic glycerol-3-phosphate dehydrogenase subunit C;protein_id=CAL22411.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4290661	4290732	.	-	.	ID=id9161;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 13.10%2C E-value 0.024;gbkey=misc_feature;gene=glpC;inference=protein motif:PF00037
AL590842.1	EMBL	sequence_feature	4290676	4290711	.	-	.	ID=id9162;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;gene=glpC;inference=protein motif:ProSite:PS00198
AL590842.1	EMBL	sequence_feature	4290817	4290852	.	-	.	ID=id9163;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;gene=glpC;inference=protein motif:ProSite:PS00198
AL590842.1	EMBL	gene	4290942	4292216	.	-	.	ID=gene3778;Name=glpB;gbkey=Gene;gene=glpB;gene_biotype=protein_coding;locus_tag=YPO3825
AL590842.1	EMBL	CDS	4290942	4292216	.	-	0	ID=cds3721;Parent=gene3778;Dbxref=GOA:Q8ZAH6,InterPro:IPR003953,InterPro:IPR009158,NCBI_GP:CAL22412.1;Name=CAL22412.1;Note=Similar to Escherichia coli anaerobic glycerol-3-phosphate dehydrogenase subunit B protein GlpB SW:GLPB_ECOLI (P13033) (419 aa) fasta scores: E(): 0%2C 49.8%25 id in 416 aa%2C and to Haemophilus influenzae anaerobic glycerol-3-phosphate dehydrogenase subunit B protein GlpB SW:GLPB_HAEIN (P43800) (432 aa) fasta scores: E(): 0%2C 41.8%25 id in 433 aa;gbkey=CDS;gene=glpB;product=putative anaerobic glycerol-3-phosphate dehydrogenase subunit B;protein_id=CAL22412.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4292166	4292198	.	-	.	ID=id9164;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=glpB;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	4292206	4293861	.	-	.	ID=gene3779;Name=glpA;gbkey=Gene;gene=glpA;gene_biotype=protein_coding;locus_tag=YPO3826
AL590842.1	EMBL	CDS	4292206	4293861	.	-	0	ID=cds3722;Parent=gene3779;Dbxref=GOA:Q7CKX5,InterPro:IPR000447,InterPro:IPR006076,InterPro:IPR007419,InterPro:IPR017752,UniProtKB/TrEMBL:Q7CKX5,NCBI_GP:CAL22413.1;Name=CAL22413.1;Note=Similar to Escherichia coli anaerobic glycerol-3-phosphate dehydrogenase subunit A protein GlpA SW:GLPA_ECOLI (P13032) (542 aa) fasta scores: E(): 0%2C 77.8%25 id in 528 aa%2C and to Haemophilus influenzae anaerobic glycerol-3-phosphate dehydrogenase subunit A protein GlpA SW:GLPA_HAEIN (P43799) (563 aa) fasta scores: E(): 0%2C 70.5%25 id in 543 aa;gbkey=CDS;gene=glpA;product=anaerobic glycerol-3-phosphate dehydrogenase subunit A;protein_id=CAL22413.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4292269	4293843	.	-	.	ID=id9165;Note=Pfam match to entry PF01224 FAD_Gly3P_dh%2CFAD-dependent glycerol-3-phosphate dehydrogenase%2C score 780.00%2C E-value 9.3e-231;gbkey=misc_feature;gene=glpA;inference=protein motif:PF01224
AL590842.1	EMBL	sequence_feature	4292773	4292805	.	-	.	ID=id9166;Note=PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2.;gbkey=misc_feature;gene=glpA;inference=protein motif:ProSite:PS00978
AL590842.1	EMBL	sequence_feature	4293766	4293819	.	-	.	ID=id9167;Note=PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1.;gbkey=misc_feature;gene=glpA;inference=protein motif:ProSite:PS00977
AL590842.1	EMBL	gene	4294486	4295601	.	+	.	ID=gene3780;Name=glpQ;gbkey=Gene;gene=glpQ;gene_biotype=protein_coding;locus_tag=YPO3827
AL590842.1	EMBL	CDS	4294486	4295601	.	+	0	ID=cds3723;Parent=gene3780;Dbxref=GOA:Q0WAI3,InterPro:IPR004129,InterPro:IPR017946,UniProtKB/TrEMBL:Q0WAI3,NCBI_GP:CAL22414.1;Name=CAL22414.1;Note=Similar to Escherichia coli periplasmic glycerophosphoryl diester phosphodiesterase GlpQ SW:GLPQ_ECOLI (P09394) (358 aa) fasta scores: E(): 0%2C 73.6%25 id in 363 aa%2C and to Haemophilus influenzae glycerophosphoryl diester phosphodiesterase precursor GlpQ SW:GLPQ_HAEIN (Q06282) (364 aa) fasta scores: E(): 0%2C 63.3%25 id in 362 aa;gbkey=CDS;gene=glpQ;product=glycerophosphoryl diester phosphodiesterase;protein_id=CAL22414.1;transl_table=11
AL590842.1	EMBL	gene	4295675	4296727	.	-	.	ID=gene3781;Name=YPO3828;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3828
AL590842.1	EMBL	CDS	4295675	4296727	.	-	0	ID=cds3724;Parent=gene3781;Dbxref=GOA:Q0WAI2,InterPro:IPR004954,UniProtKB/TrEMBL:Q0WAI2,NCBI_GP:CAL22415.1;Name=CAL22415.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22415.1;transl_table=11
AL590842.1	EMBL	gene	4297143	4297952	.	-	.	ID=gene3782;Name=YPO3829;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3829
AL590842.1	EMBL	CDS	4297143	4297952	.	-	0	ID=cds3725;Parent=gene3782;Dbxref=GOA:Q0WAI1,InterPro:IPR000150,InterPro:IPR006379,InterPro:IPR023214,UniProtKB/TrEMBL:Q0WAI1,NCBI_GP:CAL22416.1;Name=CAL22416.1;Note=Similar to Salmonella typhimurium LT2 hypothetical protein YigL TR:Q9L6N4 (EMBL:AF233324) (266 aa) fasta scores: E(): 0%2C 74.0%25 id in 265 aa%2C and to Escherichia coli hypothetical protein YigL SW:YIGL_ECOLI (P27848) (265 aa) fasta scores: E(): 0%2C 68.3%25 id in 265 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF233324;product=putative haloacid dehalogenase-like hydrolase;protein_id=CAL22416.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4297200	4297943	.	-	.	ID=id9168;Note=Pfam match to entry PF00592 DUF3%2C Cof family DUF3%2Cscore 330.40%2C E-value 2e-95;gbkey=misc_feature;inference=protein motif:PF00592
AL590842.1	EMBL	sequence_feature	4297908	4297943	.	-	.	ID=id9169;Note=PS01228 Hypothetical cof family signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS01228
AL590842.1	EMBL	gene	4297987	4299000	.	-	.	ID=gene3783;Name=pldB;gbkey=Gene;gene=pldB;gene_biotype=protein_coding;locus_tag=YPO3830
AL590842.1	EMBL	CDS	4297987	4299000	.	-	0	ID=cds3726;Parent=gene3783;Dbxref=GOA:Q7CKX6,InterPro:IPR029058,UniProtKB/TrEMBL:Q7CKX6,NCBI_GP:CAL22417.1;Name=CAL22417.1;Note=Similar to Escherichia coli lysophospholipase L2 PldB SW:PLDB_ECOLI (P07000) (340 aa) fasta scores: E(): 0%2C60.4%25 id in 333 aa%2C and to Salmonella typhimurium LT2 lysophospholipase PldB TR:Q9L6N5 (EMBL:AF233324) (338 aa) fasta scores: E(): 0%2C 57.4%25 id in 333 aa;gbkey=CDS;gene=pldB;inference=similar to sequence:INSDC:AF233324;product=putative lysophospholipase;protein_id=CAL22417.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4298026	4298751	.	-	.	ID=id9170;Note=Pfam match to entry PF00561 abhydrolase%2C alpha/beta hydrolase fold%2C score 92.30%2C E-value 1e-23;gbkey=misc_feature;gene=pldB;inference=protein motif:PF00561
AL590842.1	EMBL	gene	4299196	4299816	.	+	.	ID=gene3784;Name=rhtB;gbkey=Gene;gene=rhtB;gene_biotype=protein_coding;locus_tag=YPO3831
AL590842.1	EMBL	CDS	4299196	4299816	.	+	0	ID=cds3727;Parent=gene3784;Dbxref=GOA:Q7CKX7,InterPro:IPR001123,UniProtKB/TrEMBL:Q7CKX7,NCBI_GP:CAL22418.1;Name=CAL22418.1;Note=Similar to Escherichia coli homoserine/homoserine lactone efflux protein RhtB SW:RHTB_ECOLI (P27847) (206 aa) fasta scores: E(): 0%2C 75.5%25 id in 204 aa%2C and to Salmonella typhimurium LT2 hypothetical protein RthB TR:Q9L6N6 (EMBL:AF233324) (206 aa) fasta scores: E(): 0%2C 75.5%25 id in 204 aa;gbkey=CDS;gene=rhtB;inference=similar to sequence:INSDC:AF233324;product=putative homoserine/homoserine lactone efflux protein;protein_id=CAL22418.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4299202	4299270	.	+	.	ID=id9171;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=rhtB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4299307	4299375	.	+	.	ID=id9172;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=rhtB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4299385	4299453	.	+	.	ID=id9173;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=rhtB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4299406	4299714	.	+	.	ID=id9174;Note=Pfam match to entry PF01810 LysE%2C LysE type translocator%2C score 116.60%2C E-value 4.6e-31;gbkey=misc_feature;gene=rhtB;inference=protein motif:PF01810
AL590842.1	EMBL	sequence_feature	4299541	4299609	.	+	.	ID=id9175;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=rhtB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4299637	4299705	.	+	.	ID=id9176;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=rhtB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4299742	4299801	.	+	.	ID=id9177;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=rhtB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4299867	4300487	.	-	.	ID=gene3785;Name=rhtC;gbkey=Gene;gene=rhtC;gene_biotype=protein_coding;locus_tag=YPO3832
AL590842.1	EMBL	CDS	4299867	4300487	.	-	0	ID=cds3728;Parent=gene3785;Dbxref=GOA:Q7CKX8,InterPro:IPR001123,InterPro:IPR004778,UniProtKB/TrEMBL:Q7CKX8,NCBI_GP:CAL22419.1;Name=CAL22419.1;Note=Similar to Escherichia coli threonine efflux protein RhtC SW:RHTC_ECOLI (P27846) (206 aa) fasta scores: E(): 0%2C71.4%25 id in 206 aa%2C and to Salmonella typhimurium LT2 hypothetical protein RhtC TR:Q9L6N7 (EMBL:AF233324) (206 aa) fasta scores: E(): 0%2C 71.8%25 id in 206 aa;gbkey=CDS;gene=rhtC;inference=similar to sequence:INSDC:AF233324;product=threonine efflux protein;protein_id=CAL22419.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4299873	4299929	.	-	.	ID=id9178;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=rhtC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4299960	4300286	.	-	.	ID=id9179;Note=Pfam match to entry PF01810 LysE%2C LysE type translocator%2C score 106.10%2C E-value 6.6e-28;gbkey=misc_feature;gene=rhtC;inference=protein motif:PF01810
AL590842.1	EMBL	sequence_feature	4299969	4300034	.	-	.	ID=id9180;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=rhtC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4300065	4300130	.	-	.	ID=id9181;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=rhtC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4300218	4300283	.	-	.	ID=id9182;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=rhtC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4300296	4300361	.	-	.	ID=id9183;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=rhtC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4300410	4300475	.	-	.	ID=id9184;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=rhtC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4300594	4302426	.	-	.	ID=gene3786;Name=recQ;gbkey=Gene;gene=recQ;gene_biotype=protein_coding;locus_tag=YPO3833
AL590842.1	EMBL	CDS	4300594	4302426	.	-	0	ID=cds3729;Parent=gene3786;Dbxref=GOA:Q7CKX9,InterPro:IPR001650,InterPro:IPR002121,InterPro:IPR004589,InterPro:IPR006293,InterPro:IPR010997,InterPro:IPR011545,InterPro:IPR011991,InterPro:IPR014001,InterPro:IPR018982,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CKX9,NCBI_GP:CAL22420.1;Name=CAL22420.1;Note=Similar to Escherichia coli ATP-dependent DNA helicase RecQ SW:RECQ_ECOLI (P15043) (607 aa) fasta scores: E(): 0%2C 81.4%25 id in 607 aa%2C and to Salmonella typhimurium LT2 probable ATP-dependent DNA helicase RecQ TR:Q9L6N8 (EMBL:AF233324) (615 aa) fasta scores: E(): 0%2C 80.8%25 id in 610 aa;gbkey=CDS;gene=recQ;inference=similar to sequence:INSDC:AF233324;product=ATP-dependent DNA helicase;protein_id=CAL22420.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4300597	4300836	.	-	.	ID=id9185;Note=Pfam match to entry PF00570 HRDC%2C HRDC domain%2C score 111.40%2C E-value 1.7e-29;gbkey=misc_feature;gene=recQ;inference=protein motif:PF00570
AL590842.1	EMBL	sequence_feature	4301434	4301679	.	-	.	ID=id9186;Note=Pfam match to entry PF00271 helicase_C%2C Helicases conserved C-terminal domain%2C score 98.70%2C E-value 1.1e-25;gbkey=misc_feature;gene=recQ;inference=protein motif:PF00271
AL590842.1	EMBL	sequence_feature	4301824	4302381	.	-	.	ID=id9187;Note=Pfam match to entry PF00270 DEAD%2C DEAD/DEAH box helicase%2C score 120.20%2C E-value 4.2e-37;gbkey=misc_feature;gene=recQ;inference=protein motif:PF00270
AL590842.1	EMBL	gene	4302504	4303382	.	-	.	ID=gene3787;Name=pldA;gbkey=Gene;gene=pldA;gene_biotype=protein_coding;locus_tag=YPO3834
AL590842.1	EMBL	CDS	4302504	4303382	.	-	0	ID=cds3730;Parent=gene3787;Dbxref=GOA:Q7CKY0,InterPro:IPR003187,UniProtKB/TrEMBL:Q7CKY0,NCBI_GP:CAL22421.1;Name=CAL22421.1;Note=Identical to Yersinia pseudotuberculosis phospholipase A PldA TR:Q9S1D7 (EMBL:AJ245393) (292 aa) fasta scores: E(): 0%2C 100.0%25 id in 292 aa%2C and similar to Enterobacter agglomerans outer membrane phospholipase A PldA TR:Q9Z4N8 (EMBL:AF034414) (292 aa) fasta scores: E(): 0%2C 93.5%25 id in 292 aa;gbkey=CDS;gene=pldA;inference=similar to sequence:INSDC:AJ245393;product=phospholipase A;protein_id=CAL22421.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4302516	4303319	.	-	.	ID=id9188;Note=Pfam match to entry PF02253 PLA1%2C Phospholipase A1%2Cscore 636.40%2C E-value 1.6e-187;gbkey=misc_feature;gene=pldA;inference=protein motif:PF02253
AL590842.1	EMBL	gene	4303604	4304074	.	+	.	ID=gene3788;Name=YPO3835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3835
AL590842.1	EMBL	CDS	4303604	4304074	.	+	0	ID=cds3731;Parent=gene3788;Dbxref=InterPro:IPR003736,InterPro:IPR006683,InterPro:IPR029069,UniProtKB/TrEMBL:Q7CKY1,NCBI_GP:CAL22422.1;Name=CAL22422.1;Note=Similar to Escherichia coli hypothetical protein YigI SW:YIGI_ECOLI (P27845) (155 aa) fasta scores: E(): 0%2C66.9%25 id in 151 aa%2C and to Salmonella typhimurium LT2 hypothetical protein YigI TR:Q9L6P0 (EMBL:AF233324) (155 aa) fasta scores: E(): 0%2C 66.9%25 id in 151 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF233324;product=conserved hypothetical protein;protein_id=CAL22422.1;transl_table=11
AL590842.1	EMBL	gene	4304161	4305051	.	+	.	ID=gene3789;Name=rarD;gbkey=Gene;gene=rarD;gene_biotype=protein_coding;locus_tag=YPO3836
AL590842.1	EMBL	CDS	4304161	4305051	.	+	0	ID=cds3732;Parent=gene3789;Dbxref=GOA:Q0WAH4,InterPro:IPR000620,InterPro:IPR004626,UniProtKB/TrEMBL:Q0WAH4,NCBI_GP:CAL22423.1;Name=CAL22423.1;Note=Similar to Salmonella typhimurium LT2 hypothetical protein RarD TR:Q9L6P1 (EMBL:AF233324) (294 aa) fasta scores: E(): 0%2C 75.8%25 id in 293 aa%2C and to Escherichia coli hypothetical protein RarD SW:RARD_ECOLI (P27844) (296 aa) fasta scores: E(): 0%2C 72.0%25 id in 296 aa;gbkey=CDS;gene=rarD;inference=similar to sequence:INSDC:AF233324;product=putative membrane protein;protein_id=CAL22423.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4304185	4304244	.	+	.	ID=id9189;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rarD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4304212	4304595	.	+	.	ID=id9190;Note=Pfam match to entry PF00892 DUF6%2C Integral membrane protein DUF6%2C score 54.40%2C E-value 2.5e-12;gbkey=misc_feature;gene=rarD;inference=protein motif:PF00892
AL590842.1	EMBL	sequence_feature	4304272	4304340	.	+	.	ID=id9191;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rarD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4304377	4304445	.	+	.	ID=id9192;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rarD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4304455	4304523	.	+	.	ID=id9193;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rarD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4304542	4304595	.	+	.	ID=id9194;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rarD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4304608	4304661	.	+	.	ID=id9195;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rarD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4304695	4304754	.	+	.	ID=id9196;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rarD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4304782	4304850	.	+	.	ID=id9197;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rarD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4304887	4304955	.	+	.	ID=id9198;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rarD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4304968	4305027	.	+	.	ID=id9199;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=rarD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4305149	4306099	.	-	.	ID=gene3790;Name=corA;gbkey=Gene;gene=corA;gene_biotype=protein_coding;locus_tag=YPO3837
AL590842.1	EMBL	CDS	4305149	4306099	.	-	0	ID=cds3733;Parent=gene3790;Dbxref=GOA:Q8ZAG5,InterPro:IPR002523,InterPro:IPR004488,NCBI_GP:CAL22424.1;Name=CAL22424.1;Note=Similar to Escherichia coli magnesium and cobalt transport protein CorA SW:CORA_ECOLI (P27841) (316 aa) fasta scores: E(): 0%2C 88.3%25 id in 316 aa%2C and to Salmonella typhi magnesium and cobalt transport protein CorA TR:Q9L5P6 (EMBL:AF250878) (316 aa) fasta scores: E(): 0%2C 87.3%25 id in 316 aa;gbkey=CDS;gene=corA;inference=similar to sequence:INSDC:AF250878;product=magnesium and cobalt transport protein;protein_id=CAL22424.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4305152	4306039	.	-	.	ID=id9200;Note=Pfam match to entry PF01544 CorA%2C CorA-like Mg2+ transporter protein%2C score 389.20%2C E-value 4.1e-113;gbkey=misc_feature;gene=corA;inference=protein motif:PF01544
AL590842.1	EMBL	sequence_feature	4305170	4305235	.	-	.	ID=id9201;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=corA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4305281	4305334	.	-	.	ID=id9202;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=corA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4306748	4307590	.	-	.	ID=gene3791;Name=YPO3838;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3838
AL590842.1	EMBL	CDS	4306748	4307590	.	-	0	ID=cds3734;Parent=gene3791;Dbxref=GOA:Q7CKY2,InterPro:IPR009215,InterPro:IPR013785,InterPro:IPR015813,UniProtKB/TrEMBL:Q7CKY2,NCBI_GP:CAL22425.1;Name=CAL22425.1;Note=Similar to Rhizobium sp. hypothetical protein Y4OV SW:Y4OV_RHISN (P55607) (285 aa) fasta scores: E(): 0%2C 69.4%25 id in 271 aa%2C and to the C-terminus of Arabidopsis thaliana hypothetical protein TR:BAB10918 (EMBL:AB013389) (754 aa) fasta scores: E(): 0%2C 64.1%25 id in 270 aa;gbkey=CDS;inference=similar to sequence:INSDC:AB013389;product=conserved hypothetical protein;protein_id=CAL22425.1;transl_table=11
AL590842.1	EMBL	gene	4307604	4308821	.	-	.	ID=gene3792;Name=YPO3839;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3839
AL590842.1	EMBL	CDS	4307604	4308821	.	-	0	ID=cds3735;Parent=gene3792;Dbxref=InterPro:IPR008322,NCBI_GP:CAL22426.1;Name=CAL22426.1;Note=Similar to Rhizobium sp. hypothetical protein Y4OU SW:Y4OU_RHISN (P55606) (402 aa) fasta scores: E(): 0%2C 53.9%25 id in 395 aa%2C and to the N-terminus of Arabidopsis thaliana hypothetical protein TR:BAB10918 (EMBL:AB013389) (754 aa) fasta scores: E(): 0%2C 43.4%25 id in 422 aa;gbkey=CDS;inference=similar to sequence:INSDC:AB013389;product=conserved hypothetical protein;protein_id=CAL22426.1;transl_table=11
AL590842.1	EMBL	gene	4309249	4309935	.	+	.	ID=gene3793;Name=YPO3840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3840
AL590842.1	EMBL	CDS	4309249	4309935	.	+	0	ID=cds3736;Parent=gene3793;Dbxref=GOA:Q7CKY3,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR015893,UniProtKB/TrEMBL:Q7CKY3,NCBI_GP:CAL22427.1;Name=CAL22427.1;Note=Poor database hits to the full length CDS. N-terminal region similar to Streptomyces coelicolor gamma-butyrolactone binding protein ScbR TR:O86852 (EMBL:AJ007731) (215 aa) fasta scores: E(): 0.19%2C 26.0%25 id in 104 aa%2C and Streptomyces coelicolor putative TetR family transcriptional regulatory protein SCH63.16C TR:CAC10307 (EMBL:AL442629) (245 aa) fasta scores: E(): 0.24%2C 25.9%25 id in 162 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL442629;product=putative TetR-family regulatory protein;protein_id=CAL22427.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4309321	4309455	.	+	.	ID=id9203;Note=Pfam match to entry PF00440 tetR%2C Bacterial regulatory proteins%2C tetR family%2C score 28.30%2C E-value 1.3e-05;gbkey=misc_feature;inference=protein motif:PF00440
AL590842.1	EMBL	sequence_feature	4309363	4309428	.	+	.	ID=id9204;Note=Predicted helix-turn-helix motif with score 1509 (+4.33 SD) at aa 39-60%2C sequence PSITEVASAAQLSRATAYRYFP;gbkey=misc_feature
AL590842.1	EMBL	gene	4310049	4312211	.	-	.	ID=gene3794;Name=mutU;gbkey=Gene;gene=mutU;gene_biotype=protein_coding;gene_synonym=pdeB,rad,recL,uvrD;locus_tag=YPO3841
AL590842.1	EMBL	CDS	4310049	4312211	.	-	0	ID=cds3737;Parent=gene3794;Dbxref=GOA:Q0WAG9,InterPro:IPR000212,InterPro:IPR005753,InterPro:IPR013986,InterPro:IPR014016,InterPro:IPR014017,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WAG9,NCBI_GP:CAL22428.1;Name=CAL22428.1;Note=Similar to Escherichia coli DNA helicase II UvrD SW:UVRD_ECOLI (P03018) (720 aa) fasta scores: E(): 0%2C 88.2%25 id in 720 aa%2C and to Serratia marcescens DNA helicase II UvrD TR:O31089 (EMBL:AF028736) (720 aa) fasta scores: E(): 0%2C 92.4%25 id in 720 aa;gbkey=CDS;gene=mutU;inference=similar to sequence:INSDC:AF028736;product=DNA helicase II;protein_id=CAL22428.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4310742	4312184	.	-	.	ID=id9205;Note=Pfam match to entry PF00580 UvrD-helicase%2C UvrD/REP helicase%2C score 738.30%2C E-value 3.3e-218;gbkey=misc_feature;gene=mutU;inference=protein motif:PF00580
AL590842.1	EMBL	sequence_feature	4312104	4312127	.	-	.	ID=id9206;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=mutU;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4312313	4313029	.	-	.	ID=gene3795;Name=YPO3842;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3842
AL590842.1	EMBL	CDS	4312313	4313029	.	-	0	ID=cds3738;Parent=gene3795;Dbxref=GOA:Q7CKY4,InterPro:IPR006439,InterPro:IPR023214,UniProtKB/TrEMBL:Q7CKY4,NCBI_GP:CAL22429.1;Name=CAL22429.1;Note=Similar to Serratia marcescens hypothetical protein TR:O31088 (EMBL:AF028736) (238 aa) fasta scores: E(): 0%2C76.1%25 id in 238 aa%2C and to Escherichia coli hypothetical protein YigB SW:YIGB_ECOLI (P23306) (238 aa) fasta scores: E(): 0%2C 64.7%25 id in 238 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF028736;product=putative haloacid dehalogenase-like hydrolase;protein_id=CAL22429.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4312400	4313002	.	-	.	ID=id9207;Note=Pfam match to entry PF00702 Hydrolase%2C haloacid dehalogenase-like hydrolase%2C score 124.20%2C E-value 2.4e-33;gbkey=misc_feature;inference=protein motif:PF00702
AL590842.1	EMBL	gene	4313029	4313940	.	-	.	ID=gene3796;Name=xerC;gbkey=Gene;gene=xerC;gene_biotype=protein_coding;locus_tag=YPO3843
AL590842.1	EMBL	CDS	4313029	4313940	.	-	0	ID=cds3739;Parent=gene3796;Dbxref=GOA:Q8D1K0,InterPro:IPR002104,InterPro:IPR004107,InterPro:IPR010998,InterPro:IPR011010,InterPro:IPR011931,InterPro:IPR013762,InterPro:IPR023009,InterPro:IPR023109,NCBI_GP:CAL22430.1;Name=CAL22430.1;Note=Similar to Serratia marcescens site specific recombinase XerC TR:O31087 (EMBL:AF028736) (303 aa) fasta scores: E(): 0%2C 80.5%25 id in 303 aa%2C and to Salmonella typhimurium integrase/recombinase XerC TR:AAF33443 (EMBL:U92525) (300 aa) fasta scores: E(): 0%2C 73.6%25 id in 296 aa;gbkey=CDS;gene=xerC;inference=similar to sequence:INSDC:U92525;product=putative integrase/recombinase;protein_id=CAL22430.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4313074	4313607	.	-	.	ID=id9208;Note=Pfam match to entry PF00589 Phage_integrase%2C Phage integrase family%2C score 209.10%2C E-value 6.7e-59;gbkey=misc_feature;gene=xerC;inference=protein motif:PF00589
AL590842.1	EMBL	gene	4313937	4314641	.	-	.	ID=gene3797;Name=YPO3844;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3844
AL590842.1	EMBL	CDS	4313937	4314641	.	-	0	ID=cds3740;Parent=gene3797;Dbxref=InterPro:IPR007435,UniProtKB/TrEMBL:Q7CKY5,NCBI_GP:CAL22431.1;Name=CAL22431.1;Note=Similar to Escherichia coli hypothetical protein YigA SW:YIGA_ECOLI (P23305) (235 aa) fasta scores: E(): 0%2C66.1%25 id in 230 aa%2C and to Salmonella typhimurium LT2 hypothetical protein YigA TR:Q9L6P5 (EMBL:AF233324) (235 aa) fasta scores: E(): 0%2C 63.8%25 id in 235 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF233324;product=conserved hypothetical protein;protein_id=CAL22431.1;transl_table=11
AL590842.1	EMBL	gene	4314706	4315530	.	-	.	ID=gene3798;Name=dapF;gbkey=Gene;gene=dapF;gene_biotype=protein_coding;locus_tag=YPO3845
AL590842.1	EMBL	CDS	4314706	4315530	.	-	0	ID=cds3741;Parent=gene3798;Dbxref=GOA:P46357,InterPro:IPR001653,InterPro:IPR018510,NCBI_GP:CAL22432.1;Name=CAL22432.1;Note=Similar to Haemophilus influenzae diaminopimelate epimerase DapF SW:DAPF_HAEIN (P44859) (274 aa) fasta scores: E(): 0%2C 75.9%25 id in 274 aa. The N-terminal region of the Yersinia pestis diaminopimelate epimerase has been previosuly sequenced as DapF (fragment) SW:DAPF_YERPE (P46357) (198 aa) fasta scores: E(): 0%2C 99.5%25 id in 185 aa;gbkey=CDS;gene=dapF;product=diaminopimelate epimerase;protein_id=CAL22432.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4314709	4315530	.	-	.	ID=id9209;Note=Pfam match to entry PF01678 DAP_epimerase%2CDiaminopimelate epimerase%2C score 550.20%2C E-value 1.4e-161;gbkey=misc_feature;gene=dapF;inference=protein motif:PF01678
AL590842.1	EMBL	sequence_feature	4315297	4315341	.	-	.	ID=id9210;Note=PS01326 Diaminopimelate epimerase signature.;gbkey=misc_feature;gene=dapF;inference=protein motif:ProSite:PS01326
AL590842.1	EMBL	gene	4315714	4315902	.	-	.	ID=gene3799;Name=YPO3846;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3846
AL590842.1	EMBL	CDS	4315714	4315902	.	-	0	ID=cds3742;Parent=gene3799;Dbxref=UniProtKB/TrEMBL:Q7CKY6,NCBI_GP:CAL22433.1;Name=CAL22433.1;Note=Similar to Escherichia coli hypothetical protein YifL SW:YIFL_ECOLI (P39166) (67 aa) fasta scores: E(): 0.00094%2C 45.0%25 id in 60 aa%2C and to Salmonella typhimurium LT2 hypothetical protein YifL TR:Q9L6P7 (EMBL:AF233324) (67 aa) fasta scores: E(): 0.0008%2C 44.3%25 id in 61 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF233324;product=putative lipoprotein;protein_id=CAL22433.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4315843	4315875	.	-	.	ID=id9211;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	4316054	4316374	.	+	.	ID=gene3800;Name=cyaY;gbkey=Gene;gene=cyaY;gene_biotype=protein_coding;locus_tag=YPO3847
AL590842.1	EMBL	CDS	4316054	4316374	.	+	0	ID=cds3743;Parent=gene3800;Dbxref=GOA:P46356,InterPro:IPR002908,InterPro:IPR020895,NCBI_GP:CAL22434.1;Name=CAL22434.1;Note=Previously sequenced as Yersinia pestis hypothetical protein CyaY SW:CYAY_YERPE (P46356) (106 aa) fasta scores: E(): 0%2C 100.0%25 id in 106 aa. Similar to Yersinia intermedia hypothetical protein CyaY SW:CYAY_YERIN (P30534) (107 aa) fasta scores: E(): 0%2C 87.9%25 id in 107 aa;gbkey=CDS;gene=cyaY;product=frataxin-like protein;protein_id=CAL22434.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4316054	4316371	.	+	.	ID=id9212;Note=Pfam match to entry PF01491 Frataxin_Cyay%2CFrataxin-like domain%2C score 242.00%2C E-value 8.3e-69;gbkey=misc_feature;gene=cyaY;inference=protein motif:PF01491
AL590842.1	EMBL	gene	4316618	4319170	.	-	.	ID=gene3801;Name=cya;gbkey=Gene;gene=cya;gene_biotype=protein_coding;gene_synonym=cyaA;locus_tag=YPO3848
AL590842.1	EMBL	CDS	4316618	4319170	.	-	0	ID=cds3744;Parent=gene3801;Dbxref=GOA:P40127,InterPro:IPR000274,InterPro:IPR024685,InterPro:IPR024686,NCBI_GP:CAL22435.1;Name=CAL22435.1;Note=Previously sequenced as Yersinia pestis adenylate cyclase Cya SW:CYAA_YERPE (P40127) (850 aa) fasta scores: E(): 0%2C 99.3%25 id in 850 aa. Sequence varies from the database entry at 5 residues. CDS is similar to Escherichia coli adenylate cyclase CyaA SW:CYAA_ECOLI (P00936) (848 aa) fasta scores: E(): 0%2C 83.5%25 id in 831 aa;gbkey=CDS;gene=cya;product=adenylate cyclase;protein_id=CAL22435.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4316681	4319170	.	-	.	ID=id9213;Note=Pfam match to entry PF01295 Adenylate_cycla%2CAdenylate cyclase%2C class-I%2C score 2141.30%2C E-value 0;gbkey=misc_feature;gene=cya;inference=protein motif:PF01295
AL590842.1	EMBL	sequence_feature	4317335	4317379	.	-	.	ID=id9214;Note=PS01093 Adenylate cyclases class-I signature 2.;gbkey=misc_feature;gene=cya;inference=protein motif:ProSite:PS01093
AL590842.1	EMBL	sequence_feature	4318412	4318447	.	-	.	ID=id9215;Note=PS01092 Adenylate cyclases class-I signature 1.;gbkey=misc_feature;gene=cya;inference=protein motif:ProSite:PS01092
AL590842.1	EMBL	gene	4319664	4320605	.	+	.	ID=gene3802;Name=hemC;gbkey=Gene;gene=hemC;gene_biotype=protein_coding;gene_synonym=popE;locus_tag=YPO3849
AL590842.1	EMBL	CDS	4319664	4320605	.	+	0	ID=cds3745;Parent=gene3802;Dbxref=GOA:P46355,InterPro:IPR000860,InterPro:IPR022417,InterPro:IPR022418,InterPro:IPR022419,NCBI_GP:CAL22436.1;Name=CAL22436.1;Note=Similar to Escherichia coli porphobilinogen deaminase HemC SW:HEM3_ECOLI (P06983) (313 aa) fasta scores: E(): 0%2C 80.5%25 id in 313 aa%2C and to Salmonella typhimurium porphobilinogen deaminase HemC SW:HEM3_SALTY (Q9L6Q2) (313 aa) fasta scores: E(): 0%2C 79.6%25 id in 313 aa;gbkey=CDS;gene=hemC;product=porphobilinogen deaminase;protein_id=CAL22436.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4319679	4320551	.	+	.	ID=id9216;Note=Pfam match to entry PF01379 Porphobil_deam%2CPorphobilinogen deaminase%2C score 604.50%2C E-value 6.5e-178;gbkey=misc_feature;gene=hemC;inference=protein motif:PF01379
AL590842.1	EMBL	sequence_feature	4320354	4320404	.	+	.	ID=id9217;Note=PS00533 Porphobilinogen deaminase cofactor-binding site.;gbkey=misc_feature;gene=hemC;inference=protein motif:ProSite:PS00533
AL590842.1	EMBL	gene	4320602	4321351	.	+	.	ID=gene3803;Name=hemD;gbkey=Gene;gene=hemD;gene_biotype=protein_coding;locus_tag=YPO3850
AL590842.1	EMBL	CDS	4320602	4321351	.	+	0	ID=cds3746;Parent=gene3803;Dbxref=GOA:Q7CKY7,InterPro:IPR003754,UniProtKB/TrEMBL:Q7CKY7,NCBI_GP:CAL22437.1;Name=CAL22437.1;Note=Similar to Escherichia coli uroporphyrinogen-III synthase HemD SW:HEM4_ECOLI (P09126) (246 aa) fasta scores: E(): 0%2C 61.0%25 id in 246 aa%2C and to Salmonella typhimurium LT2 probable uroporphyrinogen-III synthase HemD TR:Q9L6Q3 (EMBL:AF233324) (246 aa) fasta scores: E(): 0%2C 61.4%25 id in 246 aa;gbkey=CDS;gene=hemD;inference=similar to sequence:INSDC:AF233324;product=uroporphyrinogen-III synthase;protein_id=CAL22437.1;transl_table=11
AL590842.1	EMBL	gene	4321382	4322506	.	+	.	ID=gene3804;Name=hemX;gbkey=Gene;gene=hemX;gene_biotype=protein_coding;locus_tag=YPO3851
AL590842.1	EMBL	CDS	4321382	4322506	.	+	0	ID=cds3747;Parent=gene3804;Dbxref=GOA:Q0WAF9,InterPro:IPR007470,UniProtKB/TrEMBL:Q0WAF9,NCBI_GP:CAL22438.1;Name=CAL22438.1;Note=Similar to Escherichia coli putative uroporphyrin-III C-methyltransferase HemX SW:HEMX_ECOLI (P09127) (393 aa) fasta scores: E(): 0%2C 68.1%25 id in 367 aa%2Cand to Salmonella typhimurium LT2 putative uroporphyrinogen III methylase HemX TR:Q9L6Q4 (EMBL:AF233324) (389 aa) fasta scores: E(): 0%2C 65.5%25 id in 371 aa. Contains coiled-coil domain%2C residues 76 to 117;gbkey=CDS;gene=hemX;inference=similar to sequence:INSDC:AF233324;product=putative uroporphyrin-III C-methyltransferase;protein_id=CAL22438.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4321490	4321549	.	+	.	ID=id9218;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=hemX;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4322509	4323729	.	+	.	ID=gene3805;Name=hemY;gbkey=Gene;gene=hemY;gene_biotype=protein_coding;locus_tag=YPO3852
AL590842.1	EMBL	CDS	4322509	4323729	.	+	0	ID=cds3748;Parent=gene3805;Dbxref=GOA:Q7CKY8,InterPro:IPR005254,InterPro:IPR010817,InterPro:IPR011990,InterPro:IPR013026,InterPro:IPR019734,UniProtKB/TrEMBL:Q7CKY8,NCBI_GP:CAL22439.1;Name=CAL22439.1;Note=Similar to Escherichia coli putative protoheme IX biogenesis protein HemY SW:HEMY_ECOLI (P09128) (398 aa) fasta scores: E(): 0%2C 70.6%25 id in 395 aa%2C and to Salmonella typhimurium LT2 hypothetical protein HemY TR:Q9L6Q5 (EMBL:AF233324) (398 aa) fasta scores: E(): 0%2C 68.9%25 id in 395 aa;gbkey=CDS;gene=hemY;inference=similar to sequence:INSDC:AF233324;product=putative protoheme IX biogenesis protein;protein_id=CAL22439.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4322521	4322589	.	+	.	ID=id9219;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=hemY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4322626	4322694	.	+	.	ID=id9220;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=hemY;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	repeat_region	4323814	4324525	.	-	.	ID=id9221;Note=Contains a 'A' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	4323922	4324380	.	-	.	ID=gene3806;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO3853
AL590842.1	EMBL	CDS	4323922	4324380	.	-	0	ID=cds3749;Parent=gene3806;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL22440.1;Name=CAL22440.1;Note=Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL22440.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4324015	4324326	.	-	.	ID=id9222;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	tRNA	4325247	4325323	.	-	.	ID=rna95;Note=tRNA Pro anticodon TGG%2C Cove score 92.73;gbkey=tRNA;product=tRNA-Pro
AL590842.1	EMBL	exon	4325247	4325323	.	-	.	ID=id9223;Parent=rna95;Note=tRNA Pro anticodon TGG%2C Cove score 92.73;gbkey=tRNA;product=tRNA-Pro
AL590842.1	EMBL	tRNA	4325399	4325485	.	-	.	ID=rna96;Note=tRNA Leu anticodon CAG%2C Cove score 67.09;gbkey=tRNA;product=tRNA-Leu
AL590842.1	EMBL	exon	4325399	4325485	.	-	.	ID=id9224;Parent=rna96;Note=tRNA Leu anticodon CAG%2C Cove score 67.09;gbkey=tRNA;product=tRNA-Leu
AL590842.1	EMBL	tRNA	4325502	4325577	.	-	.	ID=rna97;Note=tRNA His anticodon GTG%2C Cove score 84.86;gbkey=tRNA;product=tRNA-His
AL590842.1	EMBL	exon	4325502	4325577	.	-	.	ID=id9225;Parent=rna97;Note=tRNA His anticodon GTG%2C Cove score 84.86;gbkey=tRNA;product=tRNA-His
AL590842.1	EMBL	tRNA	4325661	4325737	.	-	.	ID=rna98;Note=tRNA Arg anticodon CCG%2C Cove score 91.00;gbkey=tRNA;product=tRNA-Arg
AL590842.1	EMBL	exon	4325661	4325737	.	-	.	ID=id9226;Parent=rna98;Note=tRNA Arg anticodon CCG%2C Cove score 91.00;gbkey=tRNA;product=tRNA-Arg
AL590842.1	EMBL	gene	4325886	4327277	.	-	.	ID=gene3807;Name=YPO3854;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3854
AL590842.1	EMBL	CDS	4325886	4327277	.	-	0	ID=cds3750;Parent=gene3807;Dbxref=GOA:Q7CKZ0,InterPro:IPR002293,InterPro:IPR004840,InterPro:IPR004841,UniProtKB/TrEMBL:Q7CKZ0,NCBI_GP:CAL22441.1;Name=CAL22441.1;Note=Similar to Salmonella typhimurium proline-specific permease ProY SW:PROY_SALTY (P37460) (456 aa) fasta scores: E(): 0%2C 46.0%25 id in 439 aa%2C and to Salmonella typhimurium probable transport protein YifK SW:YIFK_SALTY (P37456) (461 aa) fasta scores: E(): 0%2C 80.5%25 id in 451 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative permease protein;protein_id=CAL22441.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4325919	4327250	.	-	.	ID=id9227;Note=Pfam match to entry PF00324 aa_permeases%2C Amino acid permease%2C score 494.40%2C E-value 8.6e-145;gbkey=misc_feature;inference=protein motif:PF00324
AL590842.1	EMBL	sequence_feature	4325925	4325990	.	-	.	ID=id9228;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4326003	4326068	.	-	.	ID=id9229;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4326132	4326197	.	-	.	ID=id9230;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4326213	4326278	.	-	.	ID=id9231;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4326372	4326437	.	-	.	ID=id9232;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4326483	4326548	.	-	.	ID=id9233;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4326633	4326698	.	-	.	ID=id9234;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4326744	4326809	.	-	.	ID=id9235;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4326831	4326896	.	-	.	ID=id9236;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4326927	4326992	.	-	.	ID=id9237;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4327059	4327151	.	-	.	ID=id9238;Note=PS00218 Amino acid permeases signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00218
AL590842.1	EMBL	sequence_feature	4327095	4327151	.	-	.	ID=id9239;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4327164	4327214	.	-	.	ID=id9240;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4327801	4328541	.	-	.	ID=gene3808;Name=rffM;gbkey=Gene;gene=rffM;gene_biotype=protein_coding;gene_synonym=wecG;locus_tag=YPO3855
AL590842.1	EMBL	CDS	4327801	4328541	.	-	0	ID=cds3751;Parent=gene3808;Dbxref=GOA:Q8ZAF2,InterPro:IPR004629,InterPro:IPR023085,NCBI_GP:CAL22442.1;Name=CAL22442.1;Note=Similar to Escherichia coli probable UDP-N-acetyl-D-mannosaminuronic acid transferase WecG SW:WECG_ECOLI (P27836) (246 aa) fasta scores: E(): 0%2C 70.7%25 id in 246 aa%2C and to Bacillus subtilis teichoic acid biosynthesis protein A TagA SW:TAGA_BACSU (P27620) (256 aa) fasta scores: E(): 5.9e-19%2C 32.5%25 id in 203 aa;gbkey=CDS;gene=rffM;product=probable UDP-N-acetyl-D-mannosaminuronic acid transferase;protein_id=CAL22442.1;transl_table=11
AL590842.1	EMBL	gene	4328550	4329914	.	-	.	ID=gene3809;Name=rffT;gbkey=Gene;gene=rffT;gene_biotype=protein_coding;gene_synonym=wecF;locus_tag=YPO3856
AL590842.1	EMBL	CDS	4328550	4329914	.	-	0	ID=cds3752;Parent=gene3809;Dbxref=GOA:Q8ZAF1,InterPro:IPR010691,NCBI_GP:CAL22443.1;Name=CAL22443.1;Note=Similar to Escherichia coli probable 4-alpha-L-fucosyltransferase WecF SW:WECF_ECOLI (P27835) (450 aa) fasta scores: E(): 0%2C 78.0%25 id in 445 aa%2C and to Salmonella typhimurium probable 4-alpha-L-fucosyltransferase WecF SW:WECF_SALTY (P37458) (426 aa) fasta scores: E(): 0%2C 78.9%25 id in 413 aa;gbkey=CDS;gene=rffT;inference=protein motif:TMHMM:2.0;product=probable 4-alpha-L-fucosyltransferase;protein_id=CAL22443.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4328628	4328693	.	-	.	ID=id9241;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=rffT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4328724	4328774	.	-	.	ID=id9242;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=rffT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4328838	4328903	.	-	.	ID=id9243;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=rffT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4329183	4329239	.	-	.	ID=id9244;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=rffT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4329246	4329302	.	-	.	ID=id9245;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=rffT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4329315	4329371	.	-	.	ID=id9246;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=rffT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4329393	4329458	.	-	.	ID=id9247;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=rffT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4329519	4329584	.	-	.	ID=id9248;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=rffT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4329648	4329704	.	-	.	ID=id9249;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=rffT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4329735	4329800	.	-	.	ID=id9250;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=rffT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4329840	4329896	.	-	.	ID=id9251;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=rffT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4329911	4330996	.	-	.	ID=gene3810;Name=YPO3857;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3857
AL590842.1	EMBL	CDS	4329911	4330996	.	-	0	ID=cds3753;Parent=gene3810;Dbxref=GOA:Q8ZAF0,InterPro:IPR009993,NCBI_GP:CAL22444.1;Name=CAL22444.1;Note=Similar to Escherichia coli hypothetical protein YifM SW:YIFM_ECOLI (P56258) (359 aa) fasta scores: E(): 0%2C63.5%25 id in 359 aa%2C and to Salmonella typhimurium LT2 hypothetical protein YifM TR:Q9L6Q8 (EMBL:AF233324) (359 aa) fasta scores: E(): 0%2C 64.6%25 id in 359 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF233324;product=conserved hypothetical protein;protein_id=CAL22444.1;transl_table=11
AL590842.1	EMBL	gene	4331019	4332275	.	-	.	ID=gene3811;Name=b3792;gbkey=Gene;gene=b3792;gene_biotype=protein_coding;gene_synonym=wzx,wzxE;locus_tag=YPO3858
AL590842.1	EMBL	CDS	4331019	4332275	.	-	0	ID=cds3754;Parent=gene3811;Dbxref=GOA:Q7CKZ1,InterPro:IPR002797,UniProtKB/TrEMBL:Q7CKZ1,NCBI_GP:CAL22445.1;Name=CAL22445.1;Note=Similar to Escherichia coli possible lipopolysaccharide biosynthesis protein WzxE SW:WZXE_ECOLI (P27834) (416 aa) fasta scores: E(): 0%2C 75.0%25 id in 416 aa%2Cand to Salmonella typhimurium LT2 hypothetical protein WzxE TR:Q9L6Q9 (EMBL:AF233324) (416 aa) fasta scores: E(): 0%2C74.8%25 id in 416 aa;gbkey=CDS;gene=b3792;inference=similar to sequence:INSDC:AF233324;product=putative lipopolysaccharide biosynthesis protein;protein_id=CAL22445.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4331040	4331105	.	-	.	ID=id9252;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=b3792;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4331124	4331189	.	-	.	ID=id9253;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=b3792;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4331211	4331276	.	-	.	ID=id9254;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=b3792;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4331322	4331387	.	-	.	ID=id9255;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=b3792;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4331424	4332269	.	-	.	ID=id9256;Note=Pfam match to entry PF01943 Polysacc_synt%2CPolysaccharide biosynthesis protein%2C score 22.00%2C E-value 6e-05;gbkey=misc_feature;gene=b3792;inference=protein motif:PF01943
AL590842.1	EMBL	sequence_feature	4331451	4331516	.	-	.	ID=id9257;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=b3792;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4331562	4331627	.	-	.	ID=id9258;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=b3792;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4331691	4331756	.	-	.	ID=id9259;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=b3792;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4331772	4331837	.	-	.	ID=id9260;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=b3792;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4331859	4331924	.	-	.	ID=id9261;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=b3792;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4331970	4332035	.	-	.	ID=id9262;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=b3792;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4332075	4332140	.	-	.	ID=id9263;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=b3792;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4332171	4332236	.	-	.	ID=id9264;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=b3792;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4332277	4333407	.	-	.	ID=gene3812;Name=b3791;gbkey=Gene;gene=b3791;gene_biotype=protein_coding;gene_synonym=rffA,wecE;locus_tag=YPO3859
AL590842.1	EMBL	CDS	4332277	4333407	.	-	0	ID=cds3755;Parent=gene3812;Dbxref=GOA:Q0WAF1,InterPro:IPR000653,InterPro:IPR012749,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q0WAF1,NCBI_GP:CAL22446.1;Name=CAL22446.1;Note=Similar to Escherichia coli lipopolysaccharide biosynthesis protein RffA SW:RFFA_ECOLI (P27833) (376 aa) fasta scores: E(): 0%2C 84.8%25 id in 375 aa%2C and to Salmonella typhimurium LT2 hypothetical protein WecE TR:Q9L6R0 (EMBL:AF233324) (376 aa) fasta scores: E(): 0%2C 82.4%25 id in 375 aa;gbkey=CDS;gene=b3791;inference=similar to sequence:INSDC:AF233324;product=putative lipopolysaccharide biosynthesis protein;protein_id=CAL22446.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4332292	4333389	.	-	.	ID=id9265;Note=Pfam match to entry PF01041 DegT_DnrJ_EryC1%2CDegT/DnrJ/EryC1/StrS family%2C score 283.20%2C E-value 3.2e-81;gbkey=misc_feature;gene=b3791;inference=protein motif:PF01041
AL590842.1	EMBL	gene	4333409	4334077	.	-	.	ID=gene3813;Name=b3790;gbkey=Gene;gene=b3790;gene_biotype=protein_coding;gene_synonym=rffC,wecD;locus_tag=YPO3860
AL590842.1	EMBL	CDS	4333409	4334077	.	-	0	ID=cds3756;Parent=gene3813;Dbxref=GOA:Q0WAF0,InterPro:IPR000182,InterPro:IPR012752,InterPro:IPR016181,UniProtKB/TrEMBL:Q0WAF0,NCBI_GP:CAL22447.1;Name=CAL22447.1;Note=Similar to Escherichia coli lipopolysaccharide biosynthesis protein RffC SW:RFFC_ECOLI (P27832) (181 aa) fasta scores: E(): 2e-28%2C 50.7%25 id in 201 aa%2C and to Salmonella typhimurium LT2 hypothetical protein WecD TR:Q9L6R1 (EMBL:AF233324) (182 aa) fasta scores: E(): 1.2e-27%2C 49.5%25 id in 202 aa. CDS contains extra internal and N-terminal residues in comparison to the other orthologues;gbkey=CDS;gene=b3790;inference=similar to sequence:INSDC:AF233324;product=putative lipopolysaccharide biosynthesis protein;protein_id=CAL22447.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4333445	4333672	.	-	.	ID=id9266;Note=Pfam match to entry PF00583 Acetyltransf%2CAcetyltransferase (GNAT) family%2C score 64.00%2C E-value 3.3e-15;gbkey=misc_feature;gene=b3790;inference=protein motif:PF00583
AL590842.1	EMBL	gene	4334124	4335005	.	-	.	ID=gene3814;Name=rffH;gbkey=Gene;gene=rffH;gene_biotype=protein_coding;locus_tag=YPO3861
AL590842.1	EMBL	CDS	4334124	4335005	.	-	0	ID=cds3757;Parent=gene3814;Dbxref=GOA:Q0WAE9,InterPro:IPR005835,InterPro:IPR005907,InterPro:IPR029044,UniProtKB/TrEMBL:Q0WAE9,NCBI_GP:CAL22448.1;Name=CAL22448.1;Note=Similar to Escherichia coli glucose-1-phosphate thymidylyltransferase RffH SW:RFFH_ECOLI (P27831) (293 aa) fasta scores: E(): 0%2C 86.7%25 id in 293 aa%2C and to Klebsiella pneumoniae glucose-1-phosphate thymidylyl transferase RmlA TR:Q9ZFP0 (EMBL:AF097519) (301 aa) fasta scores: E(): 0%2C76.6%25 id in 282 aa;gbkey=CDS;gene=rffH;inference=similar to sequence:INSDC:AF097519;product=glucose-1-phosphate thymidylyltransferase;protein_id=CAL22448.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4334286	4335002	.	-	.	ID=id9267;Note=Pfam match to entry PF00483 NTP_transferase%2CNucleotidyl transferase%2C score 390.10%2C E-value 2.2e-113;gbkey=misc_feature;gene=rffH;inference=protein motif:PF00483
AL590842.1	EMBL	gene	4335300	4336367	.	-	.	ID=gene3815;Name=rffG;gbkey=Gene;gene=rffG;gene_biotype=protein_coding;locus_tag=YPO3862
AL590842.1	EMBL	CDS	4335300	4336367	.	-	0	ID=cds3758;Parent=gene3815;Dbxref=GOA:Q0WAE8,InterPro:IPR001509,InterPro:IPR005888,InterPro:IPR016040,UniProtKB/TrEMBL:Q0WAE8,NCBI_GP:CAL22449.1;Name=CAL22449.1;Note=Similar to Erwinia carotovora subsp. atroseptica dTDP-D-glucose-4%2C6-dehydratase RffG TR:O68459 (EMBL:AF044332) (357 aa) fasta scores: E(): 0%2C 85.4%25 id in 355 aa%2C and to Escherichia coli dTDP-glucose 4%2C6-dehydratase RffG SW:RFFG_ECOLI (P27830) (355 aa) fasta scores: E(): 0%2C 82.2%25 id in 353 aa;gbkey=CDS;gene=rffG;inference=similar to sequence:INSDC:AF044332;product=dTDP-D-glucose-4%2C6-dehydratase;protein_id=CAL22449.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4335363	4336358	.	-	.	ID=id9268;Note=Pfam match to entry PF01370 Epimerase%2C NAD dependent epimerase/dehydratase family%2C score 713.60%2C E-value 9.2e-211;gbkey=misc_feature;gene=rffG;inference=protein motif:PF01370
AL590842.1	EMBL	gene	4336364	4337626	.	-	.	ID=gene3816;Name=b3787;gbkey=Gene;gene=b3787;gene_biotype=protein_coding;gene_synonym=rffD,wecC;locus_tag=YPO3863
AL590842.1	EMBL	CDS	4336364	4337626	.	-	0	ID=cds3759;Parent=gene3816;Dbxref=GOA:Q8ZAE4,InterPro:IPR001732,InterPro:IPR008927,InterPro:IPR014026,InterPro:IPR014027,InterPro:IPR016040,InterPro:IPR017476,InterPro:IPR028359,NCBI_GP:CAL22450.1;Name=CAL22450.1;Note=Similar to Escherichia coli UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase RffD SW:WECC_ECOLI (P27829) (420 aa) fasta scores: E(): 0%2C 82.1%25 id in 420 aa%2C and to Burkholderia solanacearum NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase EpsD SW:EPSD_BURSO (Q45410) (423 aa) fasta scores: E(): 0%2C 62.8%25 id in 419 aa;gbkey=CDS;gene=b3787;product=putative UDP-glucose/GDP-mannose dehydrogenase;protein_id=CAL22450.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4336382	4337617	.	-	.	ID=id9269;Note=Pfam match to entry PF00984 UDPG_MGDP_dh%2CUDP-glucose/GDP-mannose dehydrogenase family%2C score 595.40%2CE-value 3.5e-175;gbkey=misc_feature;gene=b3787;inference=protein motif:PF00984
AL590842.1	EMBL	gene	4337623	4338753	.	-	.	ID=gene3817;Name=nfrC;gbkey=Gene;gene=nfrC;gene_biotype=protein_coding;gene_synonym=rffE,wecB;locus_tag=YPO3864
AL590842.1	EMBL	CDS	4337623	4338753	.	-	0	ID=cds3760;Parent=gene3817;Dbxref=GOA:Q8ZAE3,InterPro:IPR003331,InterPro:IPR029767,NCBI_GP:CAL22451.1;Name=CAL22451.1;Note=Similar to Escherichia coli UDP-N-acetylglucosamine 2-epimerase RffE SW:WECB_ECOLI (P27828) (376 aa) fasta scores: E(): 0%2C 78.5%25 id in 376 aa%2C and to Salmonella typhimurium LT2 probable UDP-N-acetyl-D-glucosamine 2-epimerase WecB TR:Q9L6R5 (EMBL:AF233324) (376 aa) fasta scores: E(): 0%2C 77.7%25 id in 376 aa;gbkey=CDS;gene=nfrC;inference=similar to sequence:INSDC:AF233324;product=UDP-N-acetylglucosamine 2-epimerase;protein_id=CAL22451.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4337644	4338630	.	-	.	ID=id9270;Note=Pfam match to entry PF02350 Epimerase_2%2C %2C score 711.50%2C E-value 3.9e-210;gbkey=misc_feature;gene=nfrC;inference=protein motif:PF02350
AL590842.1	EMBL	gene	4339034	4340095	.	-	.	ID=gene3818;Name=b3785;gbkey=Gene;gene=b3785;gene_biotype=protein_coding;gene_synonym=wzz,wzzE;locus_tag=YPO3865
AL590842.1	EMBL	CDS	4339034	4340095	.	-	0	ID=cds3761;Parent=gene3818;Dbxref=GOA:Q0WAE5,InterPro:IPR003856,UniProtKB/TrEMBL:Q0WAE5,NCBI_GP:CAL22452.1;Name=CAL22452.1;Note=Similar to Escherichia coli lipopolysaccharide biosynthesis protein WzzE SW:WZZE_ECOLI (P25905) (349 aa) fasta scores: E(): 0%2C 67.5%25 id in 342 aa%2C and to Salmonella typhimurium lipopolysaccharide biosynthesis protein WzzE SW:WZZE_SALTY (O33789) (347 aa) fasta scores: E(): 0%2C 59.1%25 id in 335 aa;gbkey=CDS;gene=b3785;inference=protein motif:TMHMM:2.0;product=putative lipopolysaccharide biosynthesis protein;protein_id=CAL22452.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4339058	4339114	.	-	.	ID=id9271;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=b3785;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4339937	4340002	.	-	.	ID=id9272;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=b3785;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4340131	4341228	.	-	.	ID=gene3819;Name=b3784;gbkey=Gene;gene=b3784;gene_biotype=protein_coding;gene_synonym=rfe;locus_tag=YPO3866
AL590842.1	EMBL	CDS	4340131	4341228	.	-	0	ID=cds3762;Parent=gene3819;Dbxref=GOA:Q8ZAE1,InterPro:IPR000715,InterPro:IPR012750,NCBI_GP:CAL22453.1;Name=CAL22453.1;Note=Similar to Escherichia coli putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase Rfe SW:RFE_ECOLI (P24235) (367 aa) fasta scores: E(): 0%2C 80.7%25 id in 352 aa%2Cand to Salmonella typhimurium LT2 putative undecaprenyl-phosphate N- acetylglucosaminyltransferase Rfe TR:Q9L6R7 (EMBL:AF233324) (367 aa) fasta scores: E(): 0%2C77.7%25 id in 355 aa;gbkey=CDS;gene=b3784;inference=similar to sequence:INSDC:AF233324;product=putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase;protein_id=CAL22453.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4340215	4340265	.	-	.	ID=id9273;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b3784;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4340296	4340346	.	-	.	ID=id9274;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b3784;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4340440	4340493	.	-	.	ID=id9275;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b3784;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4340521	4341012	.	-	.	ID=id9276;Note=Pfam match to entry PF00953 Glycos_transf_4%2CGlycosyl transferase%2C score 20.60%2C E-value 1.4e-06;gbkey=misc_feature;gene=b3784;inference=protein motif:PF00953
AL590842.1	EMBL	sequence_feature	4340524	4340589	.	-	.	ID=id9277;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b3784;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4340611	4340676	.	-	.	ID=id9278;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b3784;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4340692	4340748	.	-	.	ID=id9279;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b3784;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4340770	4340835	.	-	.	ID=id9280;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b3784;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4340866	4340922	.	-	.	ID=id9281;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b3784;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4340962	4341018	.	-	.	ID=id9282;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b3784;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4341034	4341090	.	-	.	ID=id9283;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b3784;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4341142	4341198	.	-	.	ID=id9284;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=b3784;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4341763	4343022	.	-	.	ID=gene3820;Name=nitA;gbkey=Gene;gene=nitA;gene_biotype=protein_coding;gene_synonym=psuA,rho,rnsC,sbaA,tsu;locus_tag=YPO3867
AL590842.1	EMBL	CDS	4341763	4343022	.	-	0	ID=cds3763;Parent=gene3820;Dbxref=GOA:Q7CKZ2,InterPro:IPR000194,InterPro:IPR003593,InterPro:IPR004665,InterPro:IPR011112,InterPro:IPR011113,InterPro:IPR011129,InterPro:IPR012340,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CKZ2,NCBI_GP:CAL22454.1;Name=CAL22454.1;Note=Similar to Escherichia coli transcription termination factor Rho SW:RHO_ECOLI (P03002) (419 aa) fasta scores: E(): 0%2C 95.2%25 id in 419 aa%2C and to Salmonella typhimurium transcription termination factor Rho SW:RHO_SALTY (P26980) (419 aa) fasta scores: E(): 0%2C 95.0%25 id in 419 aa;gbkey=CDS;gene=nitA;product=transcription termination factor;protein_id=CAL22454.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4342468	4342491	.	-	.	ID=id9285;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=nitA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	4342519	4342593	.	-	.	ID=id9286;Note=PS00464 Ribosomal protein L22 signature.;gbkey=misc_feature;gene=nitA;inference=protein motif:ProSite:PS00464
AL590842.1	EMBL	gene	4343502	4343828	.	-	.	ID=gene3821;Name=fipA;gbkey=Gene;gene=fipA;gene_biotype=protein_coding;gene_synonym=trxA,tsnC;locus_tag=YPO3868
AL590842.1	EMBL	CDS	4343502	4343828	.	-	0	ID=cds3764;Parent=gene3821;Dbxref=GOA:Q7CKZ3,InterPro:IPR005746,InterPro:IPR012336,InterPro:IPR013766,InterPro:IPR017937,UniProtKB/TrEMBL:Q7CKZ3,NCBI_GP:CAL22455.1;Name=CAL22455.1;Note=Similar to Escherichia coli and Salmonella typhimurium thioredoxin 1 TrxA SW:THIO_ECOLI (P00274) (108 aa) fasta scores: E(): 0%2C 86.9%25 id in 107 aa%2C and to Vibrio cholerae thioredoxin VC0306 TR:Q9KV51 (EMBL:AE004119) (108 aa) fasta scores: E(): 0%2C 79.6%25 id in 108 aa;gbkey=CDS;gene=fipA;inference=similar to sequence:INSDC:AE004119;product=thioredoxin 1;protein_id=CAL22455.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4343505	4343825	.	-	.	ID=id9287;Note=Pfam match to entry PF00085 thiored%2C Thioredoxin%2Cscore 176.20%2C E-value 7.9e-52;gbkey=misc_feature;gene=fipA;inference=protein motif:PF00085
AL590842.1	EMBL	sequence_feature	4343700	4343756	.	-	.	ID=id9288;Note=PS00194 Thioredoxin family active site.;gbkey=misc_feature;gene=fipA;inference=protein motif:ProSite:PS00194
AL590842.1	EMBL	gene	4343947	4345233	.	+	.	ID=gene3822;Name=mmrA;gbkey=Gene;gene=mmrA;gene_biotype=protein_coding;gene_synonym=rhlB;locus_tag=YPO3869
AL590842.1	EMBL	CDS	4343947	4345233	.	+	0	ID=cds3765;Parent=gene3822;Dbxref=GOA:Q8ZAD8,InterPro:IPR000629,InterPro:IPR001650,InterPro:IPR011545,InterPro:IPR014001,InterPro:IPR014014,InterPro:IPR023554,InterPro:IPR027417,NCBI_GP:CAL22456.1;Name=CAL22456.1;Note=Similar to Escherichia coli putative ATP-dependent RNA helicase RhlB SW:RHLB_ECOLI (P24229) (420 aa) fasta scores: E(): 0%2C 89.0%25 id in 427 aa%2C and to Vibrio cholerae ATP-dependent RNA helicase RhlB TR:Q9KV52 (EMBL:AE004118) (438 aa) fasta scores: E(): 0%2C 74.9%25 id in 426 aa;gbkey=CDS;gene=mmrA;inference=similar to sequence:INSDC:AE004118;product=putative DEAD-box helicase;protein_id=CAL22456.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4344010	4344648	.	+	.	ID=id9289;Note=Pfam match to entry PF00270 DEAD%2C DEAD/DEAH box helicase%2C score 186.00%2C E-value 6.9e-58;gbkey=misc_feature;gene=mmrA;inference=protein motif:PF00270
AL590842.1	EMBL	sequence_feature	4344103	4344126	.	+	.	ID=id9290;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=mmrA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	4344433	4344459	.	+	.	ID=id9291;Note=PS00039 DEAD-box subfamily ATP-dependent helicases signature.;gbkey=misc_feature;gene=mmrA;inference=protein motif:ProSite:PS00039
AL590842.1	EMBL	sequence_feature	4344754	4344999	.	+	.	ID=id9292;Note=Pfam match to entry PF00271 helicase_C%2C Helicases conserved C-terminal domain%2C score 118.80%2C E-value 1e-31;gbkey=misc_feature;gene=mmrA;inference=protein motif:PF00271
AL590842.1	EMBL	pseudogene	4345237	4346728	.	+	.	ID=gene3823;Name=gpp;gbkey=Gene;gene=gpp;gene_biotype=pseudogene;gene_synonym=gppA;locus_tag=YPO3870;pseudo=true
AL590842.1	EMBL	CDS	4345237	4346728	.	+	0	ID=cds3766;Parent=gene3823;Note=Similar to Escherichia coli guanosine-5'-triphosphate%2C3'-diphosphate pyrophosphatase GppA SW:GPPA_ECOLI (P25552) (494 aa) fasta scores: E(): 0%2C74.3%25 id in 491 aa%2C and to Salmonella typhimurium LT2 probable guanosine-5'-triphosphate%2C3'-diphosphatatase GppA TR:Q9L6S0 (EMBL:AF233324) (493 aa) fasta scores: E(): 0%2C74.1%25 id in 490 aa. The enzyme is involved in the regulation of the stringent response%2C catalysing the hydrolysis of pppGpp to ppGpp (magic spot). Contains frameshifts after codons 89 and 141. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=gpp;inference=similar to sequence:INSDC:AF233324;product=guanosine-5'-triphosphate%2C3'-diphosphate pyrophosphatase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	4346899	4348920	.	-	.	ID=gene3824;Name=rep;gbkey=Gene;gene=rep;gene_biotype=protein_coding;locus_tag=YPO3872
AL590842.1	EMBL	CDS	4346899	4348920	.	-	0	ID=cds3767;Parent=gene3824;Dbxref=GOA:Q0WAE0,InterPro:IPR000212,InterPro:IPR005752,InterPro:IPR013986,InterPro:IPR014016,InterPro:IPR014017,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WAE0,NCBI_GP:CAL22458.1;Name=CAL22458.1;Note=Similar to Escherichia coli ATP-dependent DNA helicase Rep SW:REP_ECOLI (P09980) (673 aa) fasta scores: E(): 0%2C 84.8%25 id in 672 aa%2C and to Salmonella typhimurium LT2 probable ATP-dependent DNA helicase Rep TR:Q9L6S1 (EMBL:AF233324) (674 aa) fasta scores: E(): 0%2C 85.4%25 id in 672 aa;gbkey=CDS;gene=rep;inference=similar to sequence:INSDC:AF233324;product=ATP-dependent DNA helicase Rep;protein_id=CAL22458.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4347469	4348914	.	-	.	ID=id9293;Note=Pfam match to entry PF00580 UvrD-helicase%2C UvrD/REP helicase%2C score 713.10%2C E-value 1.2e-210;gbkey=misc_feature;gene=rep;inference=protein motif:PF00580
AL590842.1	EMBL	sequence_feature	4348834	4348857	.	-	.	ID=id9294;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=rep;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4349124	4349405	.	+	.	ID=gene3825;Name=ppiC;gbkey=Gene;gene=ppiC;gene_biotype=protein_coding;locus_tag=YPO3873
AL590842.1	EMBL	CDS	4349124	4349405	.	+	0	ID=cds3768;Parent=gene3825;Dbxref=GOA:Q0WAD9,InterPro:IPR000297,UniProtKB/TrEMBL:Q0WAD9,NCBI_GP:CAL22459.1;Name=CAL22459.1;Note=Similar to Escherichia coli parvulin%2Cpeptidyl-prolyl cis-trans isomerase C PpiC SW:PPIC_ECOLI (P39159) (92 aa) fasta scores: E(): 7.9e-24%2C 67.4%25 id in 92 aa%2C and to Salmonella typhimurium LT2 probable peptidyl-prolyl cis-trans isomerase C PpiC TR:Q9L6S3 (EMBL:AF233324) (93 aa) fasta scores: E(): 1.5e-23%2C 66.3%25 id in 92 aa;gbkey=CDS;gene=ppiC;inference=similar to sequence:INSDC:AF233324;product=peptidyl-prolyl cis-trans isomerase C;protein_id=CAL22459.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4349127	4349396	.	+	.	ID=id9295;Note=Pfam match to entry PF00639 Rotamase%2C PPIC-type PPIASE domain.%2C score 132.40%2C E-value 8.1e-36;gbkey=misc_feature;gene=ppiC;inference=protein motif:PF00639
AL590842.1	EMBL	gene	4349644	4350435	.	+	.	ID=gene3826;Name=YPO3874;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3874
AL590842.1	EMBL	CDS	4349644	4350435	.	+	0	ID=cds3769;Parent=gene3826;Dbxref=GOA:Q7CKZ4,InterPro:IPR007788,InterPro:IPR011044,InterPro:IPR015943,UniProtKB/TrEMBL:Q7CKZ4,NCBI_GP:CAL22460.1;Name=CAL22460.1;Note=Similar to Carica papaya glutamine cyclotransferase protein TR:O81226 (EMBL:AF061240) (288 aa) fasta scores: E(): 0%2C 39.0%25 id in 259 aa%2C and to Deinococcus possible radiodurans glutamine cyclotransferase DR0112 TR:Q9RY39 (EMBL:AE001874) (294 aa) fasta scores: E(): 1.8e-28%2C 38.4%25 id in 232 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF061240;product=putative exported protein;protein_id=CAL22460.1;transl_table=11
AL590842.1	EMBL	repeat_region	4350461	4351775	.	+	.	ID=id9296;Note=insertion sequence:IS285;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	4350461	4350489	.	+	.	ID=id9297;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	4350532	4351740	.	+	.	ID=gene3827;Name=y1062;gbkey=Gene;gene=y1062;gene_biotype=protein_coding;gene_synonym=ypmt1.80C;locus_tag=YPO3875
AL590842.1	EMBL	CDS	4350532	4351740	.	+	0	ID=cds3770;Parent=gene3827;Dbxref=GOA:O68779,InterPro:IPR001207,UniProtKB/TrEMBL:O68779,NCBI_GP:CAL22461.1;Name=CAL22461.1;Note=Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa.;gbkey=CDS;gene=y1062;inference=similar to sequence:INSDC:AF053947;product=transposase for the IS285 insertion element;protein_id=CAL22461.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4350532	4351668	.	+	.	ID=id9298;Note=Pfam match to entry PF00872 Transpo_mutator%2CTransposase%2C Mutator family%2C score 430.40%2C E-value 1.6e-125;gbkey=misc_feature;gene=y1062;inference=protein motif:PF00872
AL590842.1	EMBL	sequence_feature	4351225	4351299	.	+	.	ID=id9299;Note=PS01007 Transposases%2C Mutator family%2C signature.;gbkey=misc_feature;gene=y1062;inference=protein motif:ProSite:PS01007
AL590842.1	EMBL	INVERTED	4351747	4351775	.	-	.	ID=id9300;Note=IS285 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	4352063	4352290	.	-	.	ID=gene3828;Name=YPO3876;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3876
AL590842.1	EMBL	CDS	4352063	4352290	.	-	0	ID=cds3771;Parent=gene3828;Dbxref=UniProtKB/TrEMBL:Q74R99,NCBI_GP:CAL22462.1;Name=CAL22462.1;Note=no significant database hits. CDS DNA has a low G+C content%2C 24.12%25;gbkey=CDS;product=hypothetical protein;protein_id=CAL22462.1;transl_table=11
AL590842.1	EMBL	gene	4352550	4353080	.	+	.	ID=gene3829;Name=YPO3877;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3877
AL590842.1	EMBL	CDS	4352550	4353080	.	+	0	ID=cds3772;Parent=gene3829;Dbxref=GOA:Q7CKZ6,InterPro:IPR000259,InterPro:IPR008966,UniProtKB/TrEMBL:Q7CKZ6,NCBI_GP:CAL22463.1;Name=CAL22463.1;Note=Similar to Proteus mirabilis uroepithelial cell adherence protein Uca TR:Q51889 (EMBL:U28420) (180 aa) fasta scores: E(): 1.4e-16%2C 40.7%25 id in 182 aa%2C and to Yersinia pestis probable pilin precursor TR:Q9ZC32 (EMBL:AL031866) (176 aa) fasta scores: E(): 2.9e-24%2C 46.9%25 id in 177 aa;gbkey=CDS;inference=similar to sequence:INSDC:U28420;product=putative fimbrial protein;protein_id=CAL22463.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4352703	4353077	.	+	.	ID=id9301;Note=Pfam match to entry PF00419 Fimbrial%2C Fimbrial proteins%2C score -25.40%2C E-value 0.0039;gbkey=misc_feature;inference=protein motif:PF00419
AL590842.1	EMBL	gene	4353144	4353875	.	+	.	ID=gene3830;Name=YPO3878;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3878
AL590842.1	EMBL	CDS	4353144	4353875	.	+	0	ID=cds3773;Parent=gene3830;Dbxref=GOA:Q74RA1,InterPro:IPR001829,InterPro:IPR008962,InterPro:IPR016147,InterPro:IPR016148,UniProtKB/TrEMBL:Q74RA1,NCBI_GP:CAL22464.1;Name=CAL22464.1;Note=Similar to Escherichia coli fimbrial chaperone F17a-D TR:O30925 (EMBL:AF022140) (240 aa) fasta scores: E(): 2.4e-27%2C 38.2%25 id in 238 aa%2C and to Escherichia coli O157:H7 putative chaperone Z1537 TR:AAG55652 (EMBL:AE005303) (240 aa) fasta scores: E(): 4.4e-31%2C 42.0%25 id in 238 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF022140;product=putative fimbrial chaperone;protein_id=CAL22464.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4353168	4353236	.	+	.	ID=id9302;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4353243	4353845	.	+	.	ID=id9303;Note=Pfam match to entry PF00345 pili_assembly%2CGram-negative pili assembly chaperone%2C score 210.00%2CE-value 5.4e-61;gbkey=misc_feature;inference=protein motif:PF00345
AL590842.1	EMBL	gene	4353903	4356530	.	+	.	ID=gene3831;Name=YPO3879;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3879
AL590842.1	EMBL	CDS	4353903	4356530	.	+	0	ID=cds3774;Parent=gene3831;Dbxref=GOA:Q7CKZ7,InterPro:IPR000015,InterPro:IPR018030,InterPro:IPR025885,InterPro:IPR025949,UniProtKB/TrEMBL:Q7CKZ7,NCBI_GP:CAL22465.1;Name=CAL22465.1;Note=Similar to Proteus mirabilis outer membrane usher protein AtfC TR:P72211 (EMBL:Z78535) (843 aa) fasta scores: E(): 0%2C 30.0%25 id in 841 aa%2C and to Yersinia pestis probable outer membrane usher protein FocD TR:Q9ZC30 (EMBL:AL031866) (863 aa) fasta scores: E(): 0%2C 43.5%25 id in 873 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z78535;product=putative outer membrane usher protein;protein_id=CAL22465.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4354023	4356476	.	+	.	ID=id9304;Note=Pfam match to entry PF00577 Usher%2C Fimbrial Usher proteins%2C score 863.50%2C E-value 6.9e-256;gbkey=misc_feature;inference=protein motif:PF00577
AL590842.1	EMBL	sequence_feature	4354905	4354937	.	+	.	ID=id9305;Note=PS01151 Fimbrial biogenesis outer membrane usher protein signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01151
AL590842.1	EMBL	gene	4356547	4357914	.	+	.	ID=gene3832;Name=YPO3880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3880
AL590842.1	EMBL	CDS	4356547	4357914	.	+	0	ID=cds3775;Parent=gene3832;Dbxref=GOA:Q74RA3,InterPro:IPR000259,InterPro:IPR008966,InterPro:IPR011228,UniProtKB/TrEMBL:Q74RA3,NCBI_GP:CAL22466.1;Name=CAL22466.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA2131 TR:AAG05519 (EMBL:AE004640) (453 aa) fasta scores: E(): 0%2C 44.5%25 id in 445 aa%2C and to Yersinia pestis possible pilin TR:Q9ZC29 (EMBL:AL031866) (449 aa) fasta scores: E(): 4.9e-30%2C 34.0%25 id in 415 aa. C-terminal region is similar to Escherichia coli F16 P-fimbriae major subunit protein Sia TR:P71221 (EMBL:Y08930) (167 aa) fasta scores: E(): 9.6%2C 26.3%25 id in 137 aa;gbkey=CDS;inference=similar to sequence:INSDC:Y08930;product=putative exported protein;protein_id=CAL22466.1;transl_table=11
AL590842.1	EMBL	gene	4357952	4358698	.	+	.	ID=gene3833;Name=YPO3881;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3881
AL590842.1	EMBL	CDS	4357952	4358698	.	+	0	ID=cds3776;Parent=gene3833;Dbxref=GOA:Q0WAD1,InterPro:IPR001829,InterPro:IPR008962,InterPro:IPR016147,InterPro:IPR016148,InterPro:IPR018046,UniProtKB/TrEMBL:Q0WAD1,NCBI_GP:CAL22467.1;Name=CAL22467.1;Note=Similar to Bordetella pertussis chaperone protein FimB SW:FIMB_BORPE (P33409) (244 aa) fasta scores: E(): 9.2e-29%2C 36.9%25 id in 233 aa%2C and to Pseudomonas aeruginosa probable pili assembly chaperone PA2132 TR:AAG05520 (EMBL:AE004640) (237 aa) fasta scores: E(): 0%2C 48.5%25 id in 227 aa. Possible alternative translational start sites;gbkey=CDS;inference=similar to sequence:INSDC:AE004640;product=putative chaperone protein;protein_id=CAL22467.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4357979	4358047	.	+	.	ID=id9306;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4358066	4358665	.	+	.	ID=id9307;Note=Pfam match to entry PF00345 pili_assembly%2CGram-negative pili assembly chaperone%2C score 166.00%2CE-value 5.4e-48;gbkey=misc_feature;inference=protein motif:PF00345
AL590842.1	EMBL	sequence_feature	4358282	4358335	.	+	.	ID=id9308;Note=PS00635 Gram-negative pili assembly chaperone signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00635
AL590842.1	EMBL	gene	4358722	4358880	.	+	.	ID=gene3834;Name=YPO3882;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3882
AL590842.1	EMBL	CDS	4358722	4358880	.	+	0	ID=cds3777;Parent=gene3834;Dbxref=UniProtKB/TrEMBL:Q74RA5,NCBI_GP:CAL22468.1;Name=CAL22468.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22468.1;transl_table=11
AL590842.1	EMBL	gene	4359333	4359590	.	-	.	ID=gene3835;Name=imm;gbkey=Gene;gene=imm;gene_biotype=protein_coding;locus_tag=YPO3883
AL590842.1	EMBL	CDS	4359333	4359590	.	-	0	ID=cds3778;Parent=gene3835;Dbxref=GOA:Q0WAC9,InterPro:IPR000290,InterPro:IPR023802,UniProtKB/TrEMBL:Q0WAC9,NCBI_GP:CAL22469.1;Name=CAL22469.1;Note=Similar to Escherichia coli colicin E9 immunity protein ImmE9 SW:IMM9_ECOLI (P13479) (86 aa) fasta scores: E(): 2e-19%2C 57.6%25 id in 85 aa%2C and to Escherichia coli colicin E2 immunity protein ImmE2 SW:IMM2_ECOLI (P04482) (86 aa) fasta scores: E(): 5.6e-19%2C 55.3%25 id in 85 aa;gbkey=CDS;gene=imm;product=colicin immunity protein;protein_id=CAL22469.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4359336	4359584	.	-	.	ID=id9309;Note=Pfam match to entry PF01320 Colicin_Pyocin%2C Colicin immunity protein / pyocin immunity protein%2C score 135.10%2CE-value 1.3e-36;gbkey=misc_feature;gene=imm;inference=protein motif:PF01320
AL590842.1	EMBL	gene	4359592	4359843	.	-	.	ID=gene3836;Name=YPO3884;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3884
AL590842.1	EMBL	CDS	4359592	4359843	.	-	0	ID=cds3779;Parent=gene3836;Dbxref=GOA:Q0WAC8,InterPro:IPR003060,InterPro:IPR003615,InterPro:IPR024622,UniProtKB/TrEMBL:Q0WAC8,NCBI_GP:CAL22470.1;Name=CAL22470.1;Note=Probable gene remnant%2C similar to C-terminal regions of Escherichia coli colicin E8 Col SW:CEA8_ECOLI (P09882) (205 aa) fasta scores: E(): 2.2e-14%2C 51.9%25 id in 79 aa%2C and Pseudomonas aeruginosa pyocin S2 Pys2 SW:PYS2_PSEAE (Q06584) (689 aa) fasta scores: E(): 6.1e-13%2C 51.9%25 id in 81 aa%3B~was marked partial;gbkey=CDS;product=colicin (partial);protein_id=CAL22470.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4359604	4359762	.	-	.	ID=id9310;Note=Pfam match to entry PF01844 HNH%2C HNH endonuclease%2Cscore 40.50%2C E-value 3.9e-08;gbkey=misc_feature;inference=protein motif:PF01844
AL590842.1	EMBL	gene	4360096	4360359	.	-	.	ID=gene3837;Name=YPO3885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3885
AL590842.1	EMBL	CDS	4360096	4360359	.	-	0	ID=cds3780;Parent=gene3837;Dbxref=UniProtKB/TrEMBL:Q74RA7,NCBI_GP:CAL22471.1;Name=CAL22471.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22471.1;transl_table=11
AL590842.1	EMBL	gene	4360359	4361882	.	-	.	ID=gene3838;Name=YPO3886;end_range=4361882,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3886;partial=true
AL590842.1	EMBL	CDS	4360359	4361882	.	-	0	ID=cds3781;Parent=gene3838;Dbxref=GOA:Q0WAC6,InterPro:IPR016128,UniProtKB/TrEMBL:Q0WAC6,NCBI_GP:CAL22472.1;Name=CAL22472.1;Note=Probable gene remnant%2C similar to internal regions of Pseudomonas aeruginosa pyocin S1 Pys1 SW:PYS1_PSEAE (Q06583) (617 aa) fasta scores: E(): 1.2e-09%2C 27.7%25 id in 375 aa%2C and Klebsiella pneumoniae klebicin B Kba TR:AAD39262 (EMBL:AF156893) (765 aa) fasta scores: E(): 3.2e-14%2C 27.3%25 id in 425 aa%3B~was marked partial;end_range=4361882,.;gbkey=CDS;inference=similar to sequence:INSDC:AF156893;partial=true;product=colicin (partial);protein_id=CAL22472.1;transl_table=11
AL590842.1	EMBL	gene	4361997	4362197	.	-	.	ID=gene3839;Name=YPO3887;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3887
AL590842.1	EMBL	CDS	4361997	4362197	.	-	0	ID=cds3782;Parent=gene3839;Dbxref=UniProtKB/TrEMBL:Q7CKZ8,NCBI_GP:CAL22473.1;Name=CAL22473.1;Note=Poor database hits to the full length CDS. Similar to the N-terminus of Mus musculus plectin 1 TR:Q9QXR9 (EMBL:AF188006) (71 aa) fasta scores: E(): 1.3%2C 33.9%25 id in 56 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF188006;product=hypothetical protein;protein_id=CAL22473.1;transl_table=11
AL590842.1	EMBL	gene	4362378	4363856	.	-	.	ID=gene3840;Name=ilvC;gbkey=Gene;gene=ilvC;gene_biotype=protein_coding;locus_tag=YPO3888
AL590842.1	EMBL	CDS	4362378	4363856	.	-	0	ID=cds3783;Parent=gene3840;Dbxref=GOA:Q8ZAC2,InterPro:IPR000506,InterPro:IPR008927,InterPro:IPR013023,InterPro:IPR013116,InterPro:IPR013328,InterPro:IPR014359,InterPro:IPR016040,NCBI_GP:CAL22474.1;Name=CAL22474.1;Note=Similar to Escherichia coli ketol-acid reductoisomerase IlvC SW:ILVC_ECOLI (P05793) (490 aa) fasta scores: E(): 0%2C 92.1%25 id in 491 aa%2C and to Salmonella typhimurium LT2 probable ketol-acid reductoisomerase IlvC TR:Q9L6S4 (EMBL:AF233324) (491 aa) fasta scores: E(): 0%2C91.9%25 id in 492 aa;gbkey=CDS;gene=ilvC;inference=similar to sequence:INSDC:AF233324;product=ketol-acid reductoisomerase;protein_id=CAL22474.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4362798	4363787	.	-	.	ID=id9311;Note=Pfam match to entry PF01450 IlvC%2C Acetohydroxy acid isomeroreductase%2C score 537.30%2C E-value 1.1e-157;gbkey=misc_feature;gene=ilvC;inference=protein motif:PF01450
AL590842.1	EMBL	gene	4364142	4365023	.	+	.	ID=gene3841;Name=ilvY;gbkey=Gene;gene=ilvY;gene_biotype=protein_coding;locus_tag=YPO3889
AL590842.1	EMBL	CDS	4364142	4365023	.	+	0	ID=cds3784;Parent=gene3841;Dbxref=GOA:Q0WAC3,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q0WAC3,NCBI_GP:CAL22475.1;Name=CAL22475.1;Note=Similar to Escherichia coli transcriptional activator protein IlvY SW:ILVY_ECOLI (P05827) (297 aa) fasta scores: E(): 0%2C 73.7%25 id in 293 aa%2C and to Salmonella typhimurium LT2 probable transcriptional activator protein IlvY TR:Q9L6S5 (EMBL:AF233324) (297 aa) fasta scores: E(): 0%2C 73.7%25 id in 293 aa;gbkey=CDS;gene=ilvY;inference=similar to sequence:INSDC:AF233324;product=LysR-family transcriptional regulatory protein;protein_id=CAL22475.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4364148	4364576	.	+	.	ID=id9312;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 184.00%2C E-value 2.5e-51;gbkey=misc_feature;gene=ilvY;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	4364187	4364252	.	+	.	ID=id9313;Note=Predicted helix-turn-helix motif with score 1928 (+5.75 SD) at aa 16-37%2C sequence RHFGRSAKAMHVSPSTLSRQIQ;gbkey=misc_feature;gene=ilvY
AL590842.1	EMBL	sequence_feature	4364190	4364282	.	+	.	ID=id9314;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature.;gbkey=misc_feature;gene=ilvY;inference=protein motif:ProSite:PS00044
AL590842.1	EMBL	gene	4365078	4365287	.	-	.	ID=gene3842;Name=YPO3890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3890
AL590842.1	EMBL	CDS	4365078	4365287	.	-	0	ID=cds3785;Parent=gene3842;Dbxref=UniProtKB/TrEMBL:Q74RB0,NCBI_GP:CAL22476.1;Name=CAL22476.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22476.1;transl_table=11
AL590842.1	EMBL	gene	4365899	4366090	.	+	.	ID=gene3843;Name=YPO3891;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3891
AL590842.1	EMBL	CDS	4365899	4366090	.	+	0	ID=cds3786;Parent=gene3843;Dbxref=InterPro:IPR017483,UniProtKB/TrEMBL:Q0WAC1,NCBI_GP:CAL22477.1;Name=CAL22477.1;Note=Poor database hits to the full length CDS. Similar to N-terminal region of Xylella fastidiosa hypothetical protein XF0155 TR:Q9PGZ1 (EMBL:AE003869) (295 aa) fasta scores: E(): 1.5e-05%2C 42.6%25 id in 54 aa. Similar to N-terminal region of YPO3983 (57.9%25 identity in 38 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AE003869;product=hypothetical protein;protein_id=CAL22477.1;transl_table=11
AL590842.1	EMBL	gene	4366162	4366854	.	+	.	ID=gene3844;Name=YPO3892;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3892
AL590842.1	EMBL	CDS	4366162	4366854	.	+	0	ID=cds3787;Parent=gene3844;Dbxref=InterPro:IPR017483,UniProtKB/TrEMBL:Q0WAC0,NCBI_GP:CAL22478.1;Name=CAL22478.1;Note=Poor database matches. Similar to C-terminal region of Xylella fastidiosa hypothetical protein XF0155 TR:Q9PGZ1 (EMBL:AE003869) (295 aa) fasta scores: E(): 0%2C 45.8%25 id in 212 aa. Similar to the C-terminal region of YPO3983 (51.8%25 identity in 220 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AE003869;product=conserved hypothetical protein;protein_id=CAL22478.1;transl_table=11
AL590842.1	EMBL	repeat_region	4366790	4367265	.	+	.	ID=id9315;Note=Repeated sequence thought to encode a possible membrane protein with no database hits. This sequence is repeated at positions :3197462..3197890%2C 4367331..4367806%2C4367872..4368406%2C complement(4419711..4420226) and complement(4484307..4484653);gbkey=repeat_region
AL590842.1	EMBL	gene	4366838	4367299	.	+	.	ID=gene3845;Name=YPO3893;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3893
AL590842.1	EMBL	CDS	4366838	4367299	.	+	0	ID=cds3788;Parent=gene3845;Dbxref=InterPro:IPR010351,UniProtKB/TrEMBL:Q7CKZ9,NCBI_GP:CAL22479.1;Name=CAL22479.1;Note=Poor database matches%2C similar to Escherichia coli O157:H7 hypothetical protein Z5334 TR:AAG59010 (EMBL:AE005613) (163 aa) fasta scores: E(): 7.2e-12%2C 35.4%25 id in 147 aa. Similar to YPO3894 (97.6%25 identity in 123 aa overlap)%2C YPO3935 (64.5%25 identity in 124 aa overlap)%2CYPO3895 (58.9%25 identity in 124 aa overlap) and YPO2860 (55.7%25 identity in 122 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AE005613;product=putative membrane protein;protein_id=CAL22479.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4366856	4366921	.	+	.	ID=id9316;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	repeat_region	4367331	4367806	.	+	.	ID=id9317;Note=Repeated sequence thought to encode a possible membrane protein with no database hits. This sequence is repeated at positions :3197462..3197890%2C 4366790..4367265%2C4367872..4368406%2C complement(4419711..4420226) and complement(4484307..4484653);gbkey=repeat_region
AL590842.1	EMBL	gene	4367358	4367840	.	+	.	ID=gene3846;Name=YPO3894;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3894
AL590842.1	EMBL	CDS	4367358	4367840	.	+	0	ID=cds3789;Parent=gene3846;Dbxref=InterPro:IPR010351,UniProtKB/TrEMBL:Q7CL00,NCBI_GP:CAL22480.1;Name=CAL22480.1;Note=No significant database matches. Similar to YPO3893 (97.6%25 identity in 123 aa overlap)%2C YPO3895 (67.1%25 identity in 161 aa overlap)%2C YPO3935 (66.0%25 identity in 159 aa overlap) and YPO2860 (53.8%25 identity in 160 aa overlap);gbkey=CDS;product=putative membrane protein;protein_id=CAL22480.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4367400	4367462	.	+	.	ID=id9318;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	repeat_region	4367872	4368406	.	+	.	ID=id9319;Note=Repeated sequence thought to encode a possible membrane protein with no database hits. This sequence is repeated at positions :3197462..3197890%2C 4366790..4367265%2C4367331..4367806%2C complement(4419711..4420226) and complement(4484307..4484653);gbkey=repeat_region
AL590842.1	EMBL	gene	4367899	4368384	.	+	.	ID=gene3847;Name=YPO3895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3895
AL590842.1	EMBL	CDS	4367899	4368384	.	+	0	ID=cds3790;Parent=gene3847;Dbxref=InterPro:IPR010351,UniProtKB/TrEMBL:Q7CL01,NCBI_GP:CAL22481.1;Name=CAL22481.1;Note=No significant database matches. Similar to YPO3935 (72.5%25 identity in 160 aa overlap)%2C YPO3894 (67.1%25 identity in 161 aa overlap)%2C YPO2860 (56.6%25 identity in 159 aa overlap) and YPO3893 (58.9%25 identity in 124 aa overlap);gbkey=CDS;product=putative membrane protein;protein_id=CAL22481.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4367941	4368000	.	+	.	ID=id9320;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4368515	4370059	.	-	.	ID=gene3848;Name=ilvA;gbkey=Gene;gene=ilvA;gene_biotype=protein_coding;locus_tag=YPO3896
AL590842.1	EMBL	CDS	4368515	4370059	.	-	0	ID=cds3791;Parent=gene3848;Dbxref=GOA:Q7CL02,InterPro:IPR000634,InterPro:IPR001721,InterPro:IPR001926,InterPro:IPR005787,UniProtKB/TrEMBL:Q7CL02,NCBI_GP:CAL22482.1;Name=CAL22482.1;Note=Similar to Escherichia coli biosynthetic threonine dehydratase IlvA SW:THD1_ECOLI (P04968) (514 aa) fasta scores: E(): 0%2C 84.6%25 id in 514 aa%2C and to Salmonella typhimurium biosynthetic threonine dehydratase IlvA SW:THD1_SALTY (P20506) (514 aa) fasta scores: E(): 0%2C 83.5%25 id in 514 aa;gbkey=CDS;gene=ilvA;product=threonine dehydratase;protein_id=CAL22482.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4368524	4368790	.	-	.	ID=id9321;Note=Pfam match to entry PF00585 Thr_dehydrat_C%2CC-terminal domain of Threonine dehydratase%2C score 147.10%2CE-value 3.2e-40;gbkey=misc_feature;gene=ilvA;inference=protein motif:PF00585
AL590842.1	EMBL	sequence_feature	4368803	4369075	.	-	.	ID=id9322;Note=Pfam match to entry PF00585 Thr_dehydrat_C%2CC-terminal domain of Threonine dehydratase%2C score 157.80%2CE-value 1.8e-43;gbkey=misc_feature;gene=ilvA;inference=protein motif:PF00585
AL590842.1	EMBL	sequence_feature	4369109	4369987	.	-	.	ID=id9323;Note=Pfam match to entry PF00291 PALP%2CPyridoxal-phosphate dependent enzyme%2C score 321.90%2C E-value 7.4e-93;gbkey=misc_feature;gene=ilvA;inference=protein motif:PF00291
AL590842.1	EMBL	sequence_feature	4369862	4369903	.	-	.	ID=id9324;Note=PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site.;gbkey=misc_feature;gene=ilvA;inference=protein motif:ProSite:PS00165
AL590842.1	EMBL	gene	4370065	4371915	.	-	.	ID=gene3849;Name=ilvD;gbkey=Gene;gene=ilvD;gene_biotype=protein_coding;locus_tag=YPO3897
AL590842.1	EMBL	CDS	4370065	4371915	.	-	0	ID=cds3792;Parent=gene3849;Dbxref=GOA:Q8ZAB3,InterPro:IPR000581,InterPro:IPR004404,InterPro:IPR015928,InterPro:IPR020558,NCBI_GP:CAL22483.1;Name=CAL22483.1;Note=Similar to Escherichia coli dihydroxy-acid dehydratase IlvD SW:ILVD_ECOLI (P05791) (605 aa) fasta scores: E(): 0%2C 87.5%25 id in 616 aa%2C and to Salmonella typhimurium LT2 probable dihydroxy-acid dehydratase IlvD TR:Q9L6S9 (EMBL:AF233324) (616 aa) fasta scores: E(): 0%2C86.5%25 id in 616 aa;gbkey=CDS;gene=ilvD;inference=similar to sequence:INSDC:AF233324;product=dihydroxy-acid dehydratase;protein_id=CAL22483.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4370236	4371726	.	-	.	ID=id9325;Note=Pfam match to entry PF00920 ILVD_EDD%2C Dehydratase family%2C score 957.80%2C E-value 2.7e-284;gbkey=misc_feature;gene=ilvD;inference=protein motif:PF00920
AL590842.1	EMBL	sequence_feature	4370356	4370391	.	-	.	ID=id9326;Note=PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2.;gbkey=misc_feature;gene=ilvD;inference=protein motif:ProSite:PS00887
AL590842.1	EMBL	sequence_feature	4371457	4371480	.	-	.	ID=id9327;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ilvD;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	4371520	4371552	.	-	.	ID=id9328;Note=PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1.;gbkey=misc_feature;gene=ilvD;inference=protein motif:ProSite:PS00886
AL590842.1	EMBL	repeat_region	4371951	4372091	.	+	.	ID=id9329;Note=approx. 8 x 18 bp repeats;gbkey=repeat_region
AL590842.1	EMBL	gene	4372226	4373152	.	-	.	ID=gene3850;Name=ilvE;gbkey=Gene;gene=ilvE;gene_biotype=protein_coding;locus_tag=YPO3899
AL590842.1	EMBL	CDS	4372226	4373152	.	-	0	ID=cds3793;Parent=gene3850;Dbxref=GOA:Q74RB6,InterPro:IPR001544,InterPro:IPR005785,InterPro:IPR018300,UniProtKB/TrEMBL:Q74RB6,NCBI_GP:CAL22484.1;Name=CAL22484.1;Note=Similar to Escherichia coli branched-chain amino acid aminotransferase IlvE SW:ILVE_ECOLI (P00510) (308 aa) fasta scores: E(): 0%2C 91.5%25 id in 306 aa%2C and to Salmonella typhimurium branched-chain amino acid aminotransferase IlvE SW:ILVE_SALTY (P15168) (308 aa) fasta scores: E(): 0%2C 90.8%25 id in 306 aa;gbkey=CDS;gene=ilvE;product=branched-chain amino acid aminotransferase;protein_id=CAL22484.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4372286	4373122	.	-	.	ID=id9330;Note=Pfam match to entry PF01063 aminotran_4%2CAminotransferase class IV%2C score 466.30%2C E-value 2.5e-136;gbkey=misc_feature;gene=ilvE;inference=protein motif:PF01063
AL590842.1	EMBL	sequence_feature	4372487	4372576	.	-	.	ID=id9331;Note=PS00770 Aminotransferases class-IV signature.;gbkey=misc_feature;gene=ilvE;inference=protein motif:ProSite:PS00770
AL590842.1	EMBL	gene	4373175	4373432	.	-	.	ID=gene3851;Name=ilvM;gbkey=Gene;gene=ilvM;gene_biotype=protein_coding;locus_tag=YPO3900
AL590842.1	EMBL	CDS	4373175	4373432	.	-	0	ID=cds3794;Parent=gene3851;Dbxref=GOA:Q74RB7,UniProtKB/TrEMBL:Q74RB7,NCBI_GP:CAL22485.1;Name=CAL22485.1;Note=Similar to Escherichia coli acetolactate synthase isozyme II small subunit IlvM SW:ILVM_ECOLI (P13048) (86 aa) fasta scores: E(): 2.9e-20%2C 67.4%25 id in 86 aa%2C and to Salmonella typhimurium LT2 probable acetolactate synthase isozyme II small subunit IlvM TR:Q9L6T1 (EMBL:AF233324) (86 aa) fasta scores: E(): 1e-20%2C 68.6%25 id in 86 aa;gbkey=CDS;gene=ilvM;inference=similar to sequence:INSDC:AF233324;product=acetolactate synthase isozyme II small subunit;protein_id=CAL22485.1;transl_table=11
AL590842.1	EMBL	gene	4373429	4375075	.	-	.	ID=gene3852;Name=ilvG;gbkey=Gene;gene=ilvG;gene_biotype=protein_coding;locus_tag=YPO3901
AL590842.1	EMBL	CDS	4373429	4375075	.	-	0	ID=cds3795;Parent=gene3852;Dbxref=GOA:Q7CL03,InterPro:IPR000399,InterPro:IPR011766,InterPro:IPR012000,InterPro:IPR012001,InterPro:IPR012846,InterPro:IPR029035,InterPro:IPR029061,UniProtKB/TrEMBL:Q7CL03,NCBI_GP:CAL22486.1;Name=CAL22486.1;Note=Similar to Escherichia coli acetolactate synthase isozyme II large subunit IlvG SW:ILVG_ECOLI (P00892) (548 aa) fasta scores: E(): 0%2C 79.4%25 id in 548 aa%2C and to Salmonella typhimurium LT2 acetolactate synthase II large subunit IlvG_1 TR:Q9L6T2 (EMBL:AF233324) (548 aa) fasta scores: E(): 0%2C 79.6%25 id in 548 aa;gbkey=CDS;gene=ilvG;inference=similar to sequence:INSDC:AF233324;product=acetolactate synthase isozyme II large subunit;protein_id=CAL22486.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4373510	4375045	.	-	.	ID=id9332;Note=Pfam match to entry PF00205 TPP_enzymes%2C Thiamine pyrophosphate enzymes%2C score 858.20%2C E-value 3.4e-266;gbkey=misc_feature;gene=ilvG;inference=protein motif:PF00205
AL590842.1	EMBL	sequence_feature	4373786	4373845	.	-	.	ID=id9333;Note=PS00187 Thiamine pyrophosphate enzymes signature.;gbkey=misc_feature;gene=ilvG;inference=protein motif:ProSite:PS00187
AL590842.1	EMBL	sequence_feature	4374806	4374898	.	-	.	ID=id9334;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature.;gbkey=misc_feature;gene=ilvG;inference=protein motif:ProSite:PS00044
AL590842.1	EMBL	gene	4375698	4377221	.	+	.	ID=gene3853;Name=YPO3902;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3902
AL590842.1	EMBL	CDS	4375698	4377221	.	+	0	ID=cds3796;Parent=gene3853;Dbxref=GOA:Q74RB9,InterPro:IPR000523,InterPro:IPR001208,InterPro:IPR003593,InterPro:IPR004482,InterPro:IPR014721,InterPro:IPR020568,InterPro:IPR025158,InterPro:IPR027417,UniProtKB/TrEMBL:Q74RB9,NCBI_GP:CAL22487.1;Name=CAL22487.1;Note=Similar to Haemophilus influenzae competence protein ComM SW:COMM_HAEIN (P45049) (509 aa) fasta scores: E(): 0%2C63.8%25 id in 506 aa%2C and to Pasteurella multocida hypothetical protein ComM TR:AAK03594 (EMBL:AE006187) (509 aa) fasta scores: E(): 0%2C 65.2%25 id in 506 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE006187;product=putative magnesium chelatase family protein;protein_id=CAL22487.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4375752	4376729	.	+	.	ID=id9335;Note=Pfam match to entry PF01078 Mg_chelatase%2C Magnesium chelatase%2C subunit ChlI%2C score 288.10%2C E-value 1.1e-82;gbkey=misc_feature;inference=protein motif:PF01078
AL590842.1	EMBL	sequence_feature	4376349	4376372	.	+	.	ID=id9336;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4377478	4377816	.	-	.	ID=gene3854;Name=YPO3903;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3903
AL590842.1	EMBL	CDS	4377478	4377816	.	-	0	ID=cds3797;Parent=gene3854;Dbxref=InterPro:IPR007335,UniProtKB/TrEMBL:Q0WAB0,NCBI_GP:CAL22488.1;Name=CAL22488.1;Note=Similar to Escherichia coli hypothetical protein YifE SW:YIFE_ECOLI (P27827) (111 aa) fasta scores: E(): 0%2C82.9%25 id in 111 aa%2C and to Salmonella typhimurium LT2 hypothetical protein YifE TR:Q9L6T3 (EMBL:AF233324) (112 aa) fasta scores: E(): 0%2C 79.5%25 id in 112 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF233324;product=conserved hypothetical protein;protein_id=CAL22488.1;transl_table=11
AL590842.1	EMBL	gene	4377935	4378816	.	+	.	ID=gene3855;Name=YPO3904;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3904
AL590842.1	EMBL	CDS	4377935	4378816	.	+	0	ID=cds3798;Parent=gene3855;Dbxref=GOA:Q8ZAA7,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,InterPro:IPR020890,NCBI_GP:CAL22489.1;Name=CAL22489.1;Note=Similar to Escherichia coli H-NS-dependent FlhDC transcriptional regulator HdfR TR:Q9KHQ8 (EMBL:AF251030) (279 aa) fasta scores: E(): 0%2C 61.1%25 id in 283 aa%2C and to Salmonella typhimurium LT2 hypothetical protein STMD1.99 TR:Q9L6T4 (EMBL:AF233324) (282 aa) fasta scores: E(): 0%2C63.0%25 id in 284 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF251030;product=LysR-family transcriptional regulatory protein;protein_id=CAL22489.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4377941	4378363	.	+	.	ID=id9337;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 141.00%2C E-value 2.1e-38;gbkey=misc_feature;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	4377980	4378045	.	+	.	ID=id9338;Note=Predicted helix-turn-helix motif with score 1285 (+3.56 SD) at aa 16-37%2C sequence RHFGRAAESLYLTQSAVSFRIR;gbkey=misc_feature
AL590842.1	EMBL	sequence_feature	4377983	4378075	.	+	.	ID=id9339;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00044
AL590842.1	EMBL	gene	4378803	4379795	.	-	.	ID=gene3856;Name=YPO3905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3905
AL590842.1	EMBL	CDS	4378803	4379795	.	-	0	ID=cds3799;Parent=gene3856;Dbxref=GOA:Q7CL04,InterPro:IPR001851,UniProtKB/TrEMBL:Q7CL04,NCBI_GP:CAL22490.1;Name=CAL22490.1;Note=Similar to Escherichia coli L-arabinose transport system permease protein AraH SW:ARAH_ECOLI (P08532) (329 aa) fasta scores: E(): 1.4e-23%2C 34.0%25 id in 306 aa%2C and to Escherichia coli hypothetical ABC transporter permease protein YjfF SW:YJFF_ECOLI (P37772) (323 aa) fasta scores: E(): 0%2C 70.2%25 id in 322 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative sugar transport system permease;protein_id=CAL22490.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4378872	4378937	.	-	.	ID=id9340;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4378977	4379042	.	-	.	ID=id9341;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4379073	4379138	.	-	.	ID=id9342;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4379178	4379228	.	-	.	ID=id9343;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4379259	4379324	.	-	.	ID=id9344;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4379388	4379453	.	-	.	ID=id9345;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4379469	4379534	.	-	.	ID=id9346;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4379598	4379663	.	-	.	ID=id9347;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4379709	4379774	.	-	.	ID=id9348;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4379795	4380814	.	-	.	ID=gene3857;Name=YPO3906;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3906
AL590842.1	EMBL	CDS	4379795	4380814	.	-	0	ID=cds3800;Parent=gene3857;Dbxref=GOA:Q7CL05,InterPro:IPR001851,UniProtKB/TrEMBL:Q7CL05,NCBI_GP:CAL22491.1;Name=CAL22491.1;Note=Similar to Escherichia coli ribose transport system permease protein RbsC SW:RBSC_ECOLI (P04984) (321 aa) fasta scores: E(): 3.5e-28%2C 35.6%25 id in 312 aa%2C and to Escherichia coli hypothetical ABC transporter permease protein YtfT SW:YTFT_ECOLI (P39328) (341 aa) fasta scores: E(): 0%2C 70.0%25 id in 333 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative sugar transport system permease;protein_id=CAL22491.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4379810	4379869	.	-	.	ID=id9349;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4379900	4379965	.	-	.	ID=id9350;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4379987	4380043	.	-	.	ID=id9351;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4380074	4380139	.	-	.	ID=id9352;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4380227	4380292	.	-	.	ID=id9353;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4380416	4380481	.	-	.	ID=id9354;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4380545	4380610	.	-	.	ID=id9355;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4380671	4380736	.	-	.	ID=id9356;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4380826	4382316	.	-	.	ID=gene3858;Name=YPO3907;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3907
AL590842.1	EMBL	CDS	4380826	4382316	.	-	0	ID=cds3801;Parent=gene3858;Dbxref=GOA:Q7CL06,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CL06,NCBI_GP:CAL22492.1;Name=CAL22492.1;Note=Similar to Escherichia coli ribose transport ATP-binding protein RbsA SW:RBSA_ECOLI (P04983) (501 aa) fasta scores: E(): 0%2C 38.6%25 id in 498 aa%2C and to Escherichia coli hypothetical ABC transporter ATP-binding protein YtfR SW:YTFR_ECOLI (P39326) (417 aa) fasta scores: E(): 0%2C 62.4%25 id in 375 aa;gbkey=CDS;product=putative sugar transport system ATP-binding protein;protein_id=CAL22492.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4380898	4381476	.	-	.	ID=id9357;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 101.80%2C E-value 1.4e-26;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	4381081	4381125	.	-	.	ID=id9358;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	4381669	4382229	.	-	.	ID=id9359;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 198.30%2C E-value 1.2e-55;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	4382185	4382208	.	-	.	ID=id9360;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4382402	4383358	.	-	.	ID=gene3859;Name=YPO3908;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3908
AL590842.1	EMBL	CDS	4382402	4383358	.	-	0	ID=cds3802;Parent=gene3859;Dbxref=InterPro:IPR025997,InterPro:IPR028082,UniProtKB/TrEMBL:Q7CL07,NCBI_GP:CAL22493.1;Name=CAL22493.1;Note=Similar to Escherichia coli D-ribose-binding periplasmic protein precursor RbsB SW:RBSB_ECOLI (P02925) (296 aa) fasta scores: E(): 5e-20%2C 34.3%25 id in 230 aa%2C and to Escherichia coli ABC transporter periplasmic binding protein YtfQ SW:YTFQ_ECOLI (P39325) (318 aa) fasta scores: E(): 0%2C 75.8%25 id in 318 aa;gbkey=CDS;product=putative periplasmic protein precursor;protein_id=CAL22493.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4382528	4383295	.	-	.	ID=id9361;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 54.30%2C E-value 2.7e-12;gbkey=misc_feature;inference=protein motif:PF00532
AL590842.1	EMBL	sequence_feature	4383278	4383343	.	-	.	ID=id9362;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	tRNA	4384336	4384411	.	-	.	ID=rna99;Note=tRNA Trp anticodon CCA%2C Cove score 82.06;gbkey=tRNA;product=tRNA-Trp
AL590842.1	EMBL	exon	4384336	4384411	.	-	.	ID=id9363;Parent=rna99;Note=tRNA Trp anticodon CCA%2C Cove score 82.06;gbkey=tRNA;product=tRNA-Trp
AL590842.1	EMBL	tRNA	4384420	4384496	.	-	.	ID=rna100;Note=tRNA Asp anticodon GTC%2C Cove score 90.47;gbkey=tRNA;product=tRNA-Asp
AL590842.1	EMBL	exon	4384420	4384496	.	-	.	ID=id9364;Parent=rna100;Note=tRNA Asp anticodon GTC%2C Cove score 90.47;gbkey=tRNA;product=tRNA-Asp
AL590842.1	EMBL	gene	4384614	4384847	.	-	.	ID=gene3860;Name=5S_rRNA;gbkey=Gene;gene=5S_rRNA;gene_biotype=rRNA
AL590842.1	EMBL	rRNA	4384614	4384847	.	-	.	ID=rna101;Parent=gene3860;Note=match to 5SrRNA 1..234 blast score 1140 percent identity 98 (incl. 23S-5S spacer);gbkey=rRNA;gene=5S_rRNA
AL590842.1	EMBL	exon	4384614	4384847	.	-	.	ID=id9365;Parent=rna101;Note=match to 5SrRNA 1..234 blast score 1140 percent identity 98 (incl. 23S-5S spacer);gbkey=rRNA;gene=5S_rRNA
AL590842.1	EMBL	gene	4384847	4387753	.	-	.	ID=gene3861;Name=23S_rRNA;gbkey=Gene;gene=23S_rRNA;gene_biotype=rRNA
AL590842.1	EMBL	rRNA	4384847	4387753	.	-	.	ID=rna102;Parent=gene3861;Note=match to 23S_rRNA 1..2906 (Y. enterocolitica 23S EMBL:U77925 );gbkey=rRNA;gene=23S_rRNA
AL590842.1	EMBL	exon	4384847	4387753	.	-	.	ID=id9366;Parent=rna102;Note=match to 23S_rRNA 1..2906 (Y. enterocolitica 23S EMBL:U77925 );gbkey=rRNA;gene=23S_rRNA
AL590842.1	EMBL	tRNA	4388006	4388081	.	-	.	ID=rna103;Note=tRNA Glu anticodon TTC%2C Cove score 56.95;gbkey=tRNA;product=tRNA-Glu
AL590842.1	EMBL	exon	4388006	4388081	.	-	.	ID=id9367;Parent=rna103;Note=tRNA Glu anticodon TTC%2C Cove score 56.95;gbkey=tRNA;product=tRNA-Glu
AL590842.1	EMBL	gene	4388245	4389733	.	-	.	ID=gene3862;Name=16S_rRNA;gbkey=Gene;gene=16S_rRNA;gene_biotype=rRNA
AL590842.1	EMBL	rRNA	4388245	4389733	.	-	.	ID=rna104;Parent=gene3862;Note=match to 16S_rRNA 1..1489 (EMBL:YPE16SA);gbkey=rRNA;gene=16S_rRNA
AL590842.1	EMBL	exon	4388245	4389733	.	-	.	ID=id9368;Parent=rna104;Note=match to 16S_rRNA 1..1489 (EMBL:YPE16SA);gbkey=rRNA;gene=16S_rRNA
AL590842.1	EMBL	gene	4390216	4391079	.	-	.	ID=gene3863;Name=dga;gbkey=Gene;gene=dga;gene_biotype=protein_coding;gene_synonym=glr,murI;locus_tag=YPO3909
AL590842.1	EMBL	CDS	4390216	4391079	.	-	0	ID=cds3803;Parent=gene3863;Dbxref=GOA:Q8ZAA2,InterPro:IPR001920,InterPro:IPR004391,InterPro:IPR015942,InterPro:IPR018187,NCBI_GP:CAL22494.1;Name=CAL22494.1;Note=Similar to Escherichia coli glutamate racemase MurI SW:MURI_ECOLI (P22634) (285 aa) fasta scores: E(): 0%2C 71.4%25 id in 287 aa%2C and to Pasteurella multocida possible glutamate racemase MurI TR:AAK03001 (EMBL:AE006131) (269 aa) fasta scores: E(): 0%2C 51.7%25 id in 265 aa;gbkey=CDS;gene=dga;inference=similar to sequence:INSDC:AE006131;product=putative glutamate racemase;protein_id=CAL22494.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4390348	4390938	.	-	.	ID=id9369;Note=Pfam match to entry PF01177 Asp_Glu_race%2C Aspartate / glutamate racemase%2C score 250.80%2C E-value 1.9e-71;gbkey=misc_feature;gene=dga;inference=protein motif:PF01177
AL590842.1	EMBL	sequence_feature	4390438	4390470	.	-	.	ID=id9370;Note=PS00924 Aspartate and glutamate racemases signature 2.;gbkey=misc_feature;gene=dga;inference=protein motif:ProSite:PS00924
AL590842.1	EMBL	sequence_feature	4390777	4390803	.	-	.	ID=id9371;Note=PS00923 Aspartate and glutamate racemases signature 1.;gbkey=misc_feature;gene=dga;inference=protein motif:ProSite:PS00923
AL590842.1	EMBL	gene	4391024	4392901	.	-	.	ID=gene3864;Name=YPO3910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3910
AL590842.1	EMBL	CDS	4391024	4392901	.	-	0	ID=cds3804;Parent=gene3864;Dbxref=GOA:Q8ZAA1,InterPro:IPR000531,InterPro:IPR010101,InterPro:IPR010917,InterPro:IPR012910,NCBI_GP:CAL22495.1;Name=CAL22495.1;Note=Similar to Escherichia coli vitamin B12 receptor protein BtuB SW:BTUB_ECOLI (P06129) (614 aa) fasta scores: E(): 0%2C 64.8%25 id in 623 aa%2C and to Citrobacter freundii hypothetical protein BtuB TR:O52903 (EMBL:Y09059) (612 aa) fasta scores: E(): 0%2C 64.2%25 id in 623 aa;gbkey=CDS;inference=similar to sequence:INSDC:Y09059;product=putative vitamin B12 receptor protein;protein_id=CAL22495.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4391027	4391332	.	-	.	ID=id9372;Note=Pfam match to entry PF00593 TonB_boxC%2C TonB dependent receptor C-terminal region%2C score 81.50%2C E-value 2.6e-21;gbkey=misc_feature;inference=protein motif:PF00593
AL590842.1	EMBL	sequence_feature	4391027	4391080	.	-	.	ID=id9373;Note=PS01156 TonB-dependent receptor proteins signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS01156
AL590842.1	EMBL	gene	4393381	4394484	.	+	.	ID=gene3865;Name=trmA;gbkey=Gene;gene=trmA;gene_biotype=protein_coding;locus_tag=YPO3911
AL590842.1	EMBL	CDS	4393381	4394484	.	+	0	ID=cds3805;Parent=gene3865;Dbxref=GOA:Q8ZAA0,InterPro:IPR010280,InterPro:IPR011869,InterPro:IPR029063,NCBI_GP:CAL22496.1;Name=CAL22496.1;Note=Similar to Escherichia coli tRNA (uracil-5)-methyltransferase TrmA SW:TRMA_ECOLI (P23003) (366 aa) fasta scores: E(): 0%2C 76.8%25 id in 366 aa%2C and to Haemophilus influenzae tRNA (uracil-5)-methyltransferase TrmA SW:TRMA_HAEIN (P31812) (363 aa) fasta scores: E(): 0%2C66.8%25 id in 361 aa;gbkey=CDS;gene=trmA;product=tRNA (uracil-5)-methyltransferase;protein_id=CAL22496.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4394275	4394364	.	+	.	ID=id9374;Note=PS01230 RNA methyltransferase trmA family signature 1.;gbkey=misc_feature;gene=trmA;inference=protein motif:ProSite:PS01230
AL590842.1	EMBL	sequence_feature	4394422	4394454	.	+	.	ID=id9375;Note=PS01231 RNA methyltransferase trmA family signature 2.;gbkey=misc_feature;gene=trmA;inference=protein motif:ProSite:PS01231
AL590842.1	EMBL	gene	4394618	4395025	.	-	.	ID=gene3866;Name=yijD;gbkey=Gene;gene=yijD;gene_biotype=protein_coding;locus_tag=YPO3912
AL590842.1	EMBL	CDS	4394618	4395025	.	-	0	ID=cds3806;Parent=gene3866;Dbxref=InterPro:IPR009867,UniProtKB/TrEMBL:Q7CL08,NCBI_GP:CAL22497.1;Name=CAL22497.1;Note=Similar to Escherichia coli hypothetical protein YijD SW:YIJD_ECOLI (P27308) (119 aa) fasta scores: E(): 5e-31%2C 67.0%25 id in 115 aa%2C and to Vibrio cholerae hypothetical protein VC0153 TR:Q9KVJ1 (EMBL:AE004105) (123 aa) fasta scores: E(): 8.7e-14%2C 39.4%25 id in 109 aa;gbkey=CDS;gene=yijD;inference=similar to sequence:INSDC:AE004105;product=putative membrane protein;protein_id=CAL22497.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4394699	4394764	.	-	.	ID=id9376;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=yijD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4394780	4394836	.	-	.	ID=id9377;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=yijD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4394858	4394911	.	-	.	ID=id9378;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=yijD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4394924	4394989	.	-	.	ID=id9379;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=yijD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4395038	4395685	.	-	.	ID=gene3867;Name=YPO3913;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3913
AL590842.1	EMBL	CDS	4395038	4395685	.	-	0	ID=cds3807;Parent=gene3867;Dbxref=GOA:Q7CL09,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR015893,InterPro:IPR023764,NCBI_GP:CAL22498.1;Name=CAL22498.1;Note=Similar to Escherichia coli hypothetical protein YijC SW:YIJC_ECOLI (P27307) (215 aa) fasta scores: E(): 0%2C95.7%25 id in 207 aa%2C and to Vibrio cholerae putative TetR family transcriptional regulator VC0152 TR:Q9KVJ2 (EMBL:AE004105) (213 aa) fasta scores: E(): 0%2C 72.5%25 id in 204 aa. CDS is truncated at the N-terminus relative to the E. coli orthologue;gbkey=CDS;inference=similar to sequence:INSDC:AE004105;product=TetR-family transcriptional regulatory protein;protein_id=CAL22498.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4395488	4395631	.	-	.	ID=id9380;Note=Pfam match to entry PF00440 tetR%2C Bacterial regulatory proteins%2C tetR family%2C score 44.60%2C E-value 6.8e-10;gbkey=misc_feature;inference=protein motif:PF00440
AL590842.1	EMBL	sequence_feature	4395515	4395580	.	-	.	ID=id9381;Note=Predicted helix-turn-helix motif with score 1615 (+4.69 SD) at aa 36-57%2C sequence LSLREVSREAGIAPTSFYRHFR;gbkey=misc_feature
AL590842.1	EMBL	gene	4395891	4397291	.	+	.	ID=gene3868;Name=sth;gbkey=Gene;gene=sth;gene_biotype=protein_coding;gene_synonym=sthA,udhA;locus_tag=YPO3914
AL590842.1	EMBL	CDS	4395891	4397291	.	+	0	ID=cds3808;Parent=gene3868;Dbxref=GOA:Q8ZA97,InterPro:IPR001327,InterPro:IPR004099,InterPro:IPR013027,InterPro:IPR016156,InterPro:IPR022962,InterPro:IPR023753,NCBI_GP:CAL22499.1;Name=CAL22499.1;Note=Similar to Escherichia coli soluble pyridine nucleotide transhydrogenase SthA SW:STHA_ECOLI (P27306) (465 aa) fasta scores: E(): 0%2C 84.0%25 id in 462 aa%2C and to Vibrio cholerae soluble pyridine nucleotide transhydrogenase SthA W:STHA_VIBCH (P50529) (466 aa) fasta scores: E(): 0%2C 76.8%25 id in 466 aa;gbkey=CDS;gene=sth;product=soluble pyridine nucleotide transhydrogenase;protein_id=CAL22499.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4395915	4396826	.	+	.	ID=id9382;Note=Pfam match to entry PF00070 pyr_redox%2C Pyridine nucleotide-disulphide oxidoreductase%2C score 269.00%2C E-value 1e-78;gbkey=misc_feature;gene=sth;inference=protein motif:PF00070
AL590842.1	EMBL	gene	4397274	4398191	.	-	.	ID=gene3869;Name=oxyR;gbkey=Gene;gene=oxyR;gene_biotype=protein_coding;locus_tag=YPO3915
AL590842.1	EMBL	CDS	4397274	4398191	.	-	0	ID=cds3809;Parent=gene3869;Dbxref=GOA:Q7CL10,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q7CL10,NCBI_GP:CAL22500.1;Name=CAL22500.1;Note=Similar to Erwinia carotovora hydrogen peroxide-inducible genes activator OxyR SW:OXYR_ERWCA (P71318) (302 aa) fasta scores: E(): 0%2C 91.2%25 id in 297 aa%2Cand to Escherichia coli hydrogen peroxide-inducible genes activator OxyR SW:OXYR_ECOLI (P11721) (305 aa) fasta scores: E(): 0%2C 86.6%25 id in 305 aa;gbkey=CDS;gene=oxyR;product=oxidative stress transcriptional regulatory protein;protein_id=CAL22500.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4397757	4398185	.	-	.	ID=id9383;Note=Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%2C score 176.80%2C E-value 3.5e-49;gbkey=misc_feature;gene=oxyR;inference=protein motif:PF00126
AL590842.1	EMBL	sequence_feature	4398051	4398143	.	-	.	ID=id9384;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature.;gbkey=misc_feature;gene=oxyR;inference=protein motif:ProSite:PS00044
AL590842.1	EMBL	sequence_feature	4398081	4398146	.	-	.	ID=id9385;Note=Predicted helix-turn-helix motif with score 1674 (+4.89 SD) at aa 16-37%2C sequence RHFRRAADSCHVSQPTLSGQIR;gbkey=misc_feature;gene=oxyR
AL590842.1	EMBL	gene	4398338	4399069	.	+	.	ID=gene3870;Name=YPO3916;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3916
AL590842.1	EMBL	CDS	4398338	4399069	.	+	0	ID=cds3810;Parent=gene3870;Dbxref=GOA:Q7CL11,InterPro:IPR002109,InterPro:IPR011767,InterPro:IPR011906,InterPro:IPR012336,InterPro:IPR013740,InterPro:IPR014025,UniProtKB/TrEMBL:Q7CL11,NCBI_GP:CAL22501.1;Name=CAL22501.1;Note=Similar to Vibrio cholerae peroxiredoxin family protein/glutaredoxin VC2637 TR:Q9KNU3 (EMBL:AE004330) (247 aa) fasta scores: E(): 0%2C 81.3%25 id in 241 aa%2C and to Haemophilus influenzae hypothetical protein HI0572 SW:Y572_HAEIN (P44758) (241 aa) fasta scores: E(): 0%2C 80.3%25 id in 239 aa. C-terminal region is similar to YPO0066 (50.0%25 identity in 66 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AE004330;product=putative peroxiredoxin/glutaredoxin family protein;protein_id=CAL22501.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4398353	4398820	.	+	.	ID=id9386;Note=Pfam match to entry PF00578 AhpC-TSA%2C AhpC/TSA family%2C score 158.20%2C E-value 1.4e-43;gbkey=misc_feature;inference=protein motif:PF00578
AL590842.1	EMBL	sequence_feature	4398851	4399021	.	+	.	ID=id9387;Note=Pfam match to entry PF00462 glutaredoxin%2CGlutaredoxin%2C score 45.80%2C E-value 9.3e-10;gbkey=misc_feature;inference=protein motif:PF00462
AL590842.1	EMBL	sequence_feature	4398860	4398910	.	+	.	ID=id9388;Note=PS00195 Glutaredoxin active site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00195
AL590842.1	EMBL	gene	4399164	4400627	.	+	.	ID=gene3871;Name=YPO3917;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3917
AL590842.1	EMBL	CDS	4399164	4400627	.	+	0	ID=cds3811;Parent=gene3871;Dbxref=GOA:Q7CL12,InterPro:IPR004099,InterPro:IPR013027,InterPro:IPR016156,InterPro:IPR023753,UniProtKB/TrEMBL:Q7CL12,NCBI_GP:CAL22502.1;Name=CAL22502.1;Note=Similar to Halobacterium volcanii dihydrolipoamide dehydrogenase Lpd SW:DLDH_HALVO (Q04829) (474 aa) fasta scores: E(): 2.8e-30%2C 29.2%25 id in 466 aa%2C and to Vibrio cholerae class I pyridine nucleotide-disulfide oxidoreductase VC2638 TR:Q9KNU2 (EMBL:AE004330) (484 aa) fasta scores: E(): 0%2C 75.0%25 id in 488 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004330;product=putative pyridine nucleotide-disulphide oxidoreductase;protein_id=CAL22502.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4399185	4400114	.	+	.	ID=id9389;Note=Pfam match to entry PF00070 pyr_redox%2C Pyridine nucleotide-disulphide oxidoreductase%2C score 137.60%2C E-value 7e-40;gbkey=misc_feature;inference=protein motif:PF00070
AL590842.1	EMBL	gene	4400743	4401546	.	-	.	ID=gene3872;Name=YPO3918;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3918
AL590842.1	EMBL	CDS	4400743	4401546	.	-	0	ID=cds3812;Parent=gene3872;Dbxref=GOA:Q7CL13,InterPro:IPR006260,UniProtKB/TrEMBL:Q7CL13,NCBI_GP:CAL22503.1;Name=CAL22503.1;Note=Similar to Pseudomonas putida ferric-siderophore transport protein TonB SW:TONB_PSEPU (Q05613) (243 aa) fasta scores: E(): 1.5e-13%2C 32.0%25 id in 253 aa%2C and to Haemophilus influenzae energy transducer protein TonB SW:TONB_HAEIN (P42872) (270 aa) fasta scores: E(): 1.3e-08%2C27.5%25 id in 280 aa;gbkey=CDS;product=putative membrane protein;protein_id=CAL22503.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4401445	4401510	.	-	.	ID=id9390;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4401611	4402939	.	-	.	ID=gene3873;Name=YPO3919;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3919
AL590842.1	EMBL	CDS	4401611	4402939	.	-	0	ID=cds3813;Parent=gene3873;Dbxref=GOA:Q7CL14,InterPro:IPR003997,InterPro:IPR006143,InterPro:IPR006144,InterPro:IPR010129,UniProtKB/TrEMBL:Q7CL14,NCBI_GP:CAL22504.1;Name=CAL22504.1;Note=Similar to Serratia marcescens inner membrane metalloprotease transport protein PrtE TR:Q57387 (EMBL:X81195) (437 aa) fasta scores: E(): 0%2C 45.6%25 id in 428 aa%2C and to Pseudomonas aeruginosa metalloprotease secretion protein HasE TR:AAG06793 (EMBL:AE004761) (443 aa) fasta scores: E(): 0%2C 43.8%25 id in 429 aa;gbkey=CDS;inference=similar to sequence:INSDC:X81195;product=HlyD family secretion protein;protein_id=CAL22504.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4401656	4401724	.	-	.	ID=id9391;Note=PS00543 HlyD family secretion proteins signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00543
AL590842.1	EMBL	sequence_feature	4401812	4402747	.	-	.	ID=id9392;Note=Pfam match to entry PF00529 HlyD%2C HlyD family secretion protein%2C score 143.00%2C E-value 5.4e-39;gbkey=misc_feature;inference=protein motif:PF00529
AL590842.1	EMBL	sequence_feature	4402796	4402861	.	-	.	ID=id9393;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4403015	4404823	.	-	.	ID=gene3874;Name=YPO3920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3920
AL590842.1	EMBL	CDS	4403015	4404823	.	-	0	ID=cds3814;Parent=gene3874;Dbxref=GOA:Q0WA93,InterPro:IPR001140,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR010128,InterPro:IPR011527,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WA93,NCBI_GP:CAL22505.1;Name=CAL22505.1;Note=Similar to Pseudomonas fluorescens ABC protein HasD TR:Q9RHT2 (EMBL:AB023289) (580 aa) fasta scores: E(): 0%2C62.7%25 id in 560 aa%2C and to Serratia marcescens metalloprotease transporter HasD8000 TR:Q54416 (EMBL:D83582) (582 aa) fasta scores: E(): 0%2C 61.4%25 id in 585 aa;gbkey=CDS;inference=similar to sequence:INSDC:D83582;product=ABC transporter protein;protein_id=CAL22505.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4403183	4403737	.	-	.	ID=id9394;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 208.20%2C E-value 1.2e-58;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	4403363	4403407	.	-	.	ID=id9395;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	4403693	4403716	.	-	.	ID=id9396;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4403966	4404031	.	-	.	ID=gene3875;Name=YPO3921;gbkey=Gene;gene_biotype=other;locus_tag=YPO3921
AL590842.1	EMBL	sequence_feature	4403966	4404031	.	-	.	ID=id9397;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4404272	4404337	.	-	.	ID=id9398;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4404350	4404415	.	-	.	ID=id9399;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4404581	4404646	.	-	.	ID=id9400;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4404677	4404742	.	-	.	ID=id9401;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4404272	4404337	.	-	.	ID=gene3876;Name=YPO3921;gbkey=Gene;gene_biotype=other;locus_tag=YPO3921
AL590842.1	EMBL	gene	4404350	4404415	.	-	.	ID=gene3877;Name=YPO3921;gbkey=Gene;gene_biotype=other;locus_tag=YPO3921
AL590842.1	EMBL	gene	4404581	4404646	.	-	.	ID=gene3878;Name=YPO3921;gbkey=Gene;gene_biotype=other;locus_tag=YPO3921
AL590842.1	EMBL	gene	4404677	4404742	.	-	.	ID=gene3879;Name=YPO3921;gbkey=Gene;gene_biotype=other;locus_tag=YPO3921
AL590842.1	EMBL	gene	4404989	4405606	.	-	.	ID=gene3880;Name=YPO3922;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3922
AL590842.1	EMBL	CDS	4404989	4405606	.	-	0	ID=cds3815;Parent=gene3880;Dbxref=GOA:Q7CL15,InterPro:IPR010495,PDB:4JER,PDB:4JES,PDB:4JET,UniProtKB/TrEMBL:Q7CL15,NCBI_GP:CAL22506.1;Name=CAL22506.1;Note=Similar to Serratia marcescens hemophore HasA TR:Q54450 (EMBL:X81195) (188 aa) fasta scores: E(): 2.6e-15%2C 31.6%25 id in 193 aa%2C and to Pseudomonas aeruginosa heme binding protein HasaA TR:AAG06795 (EMBL:Y16895) (205 aa) fasta scores: E(): 9.2e-15%2C 31.6%25 id in 215 aa;gbkey=CDS;inference=similar to sequence:INSDC:Y16895;product=hemophore HasA;protein_id=CAL22506.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4405217	4405240	.	-	.	ID=id9402;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4405828	4408320	.	-	.	ID=gene3881;Name=YPO3923;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3923
AL590842.1	EMBL	CDS	4405828	4408320	.	-	0	ID=cds3816;Parent=gene3881;Dbxref=GOA:Q7CL16,InterPro:IPR000531,InterPro:IPR010949,InterPro:IPR011276,InterPro:IPR012910,UniProtKB/TrEMBL:Q7CL16,NCBI_GP:CAL22507.1;Name=CAL22507.1;Note=Similar to C-terminal regions of Serratia marcescens HasA receptor protein HasR TR:P72473 (EMBL:Y08983) (899 aa) fasta scores: E(): 0%2C 55.3%25 id in 810 aa%2C and Pseudomonas fluorescens HasA receptor protein HasR TR:Q9RHT4 (EMBL:AB023289) (916 aa) fasta scores: E(): 0%2C 40.8%25 id in 830 aa;gbkey=CDS;inference=similar to sequence:INSDC:Y08983;product=putative TonB dependent receptor protein;protein_id=CAL22507.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4405831	4406172	.	-	.	ID=id9403;Note=Pfam match to entry PF00593 TonB_boxC%2C TonB dependent receptor C-terminal region%2C score 21.20%2C E-value 0.00016;gbkey=misc_feature;inference=protein motif:PF00593
AL590842.1	EMBL	gene	4408919	4410292	.	-	.	ID=gene3882;Name=argH;gbkey=Gene;gene=argH;gene_biotype=protein_coding;locus_tag=YPO3924
AL590842.1	EMBL	CDS	4408919	4410292	.	-	0	ID=cds3817;Parent=gene3882;Dbxref=GOA:Q8ZA88,InterPro:IPR000362,InterPro:IPR008948,InterPro:IPR009049,InterPro:IPR020557,InterPro:IPR022761,InterPro:IPR024083,InterPro:IPR029419,NCBI_GP:CAL22508.1;Name=CAL22508.1;Note=Similar to Escherichia coli argininosuccinate lyase ArgH SW:ARLY_ECOLI (P11447) (457 aa) fasta scores: E(): 0%2C89.0%25 id in 456 aa%2C and to Vibrio cholerae argininosuccinate lyase VC2641 TR:Q9KNT9 (EMBL:AE004330) (458 aa) fasta scores: E(): 0%2C 74.3%25 id in 456 aa;gbkey=CDS;gene=argH;inference=similar to sequence:INSDC:AE004330;product=putative argininosuccinate lyase;protein_id=CAL22508.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4408997	4410277	.	-	.	ID=id9404;Note=Pfam match to entry PF00206 lyase_1%2C Lyase%2C score 601.20%2C E-value 6.4e-177;gbkey=misc_feature;gene=argH;inference=protein motif:PF00206
AL590842.1	EMBL	sequence_feature	4409438	4409467	.	-	.	ID=id9405;Note=PS00163 Fumarate lyases signature.;gbkey=misc_feature;gene=argH;inference=protein motif:ProSite:PS00163
AL590842.1	EMBL	gene	4410459	4411232	.	-	.	ID=gene3883;Name=argB;gbkey=Gene;gene=argB;gene_biotype=protein_coding;locus_tag=YPO3925
AL590842.1	EMBL	CDS	4410459	4411232	.	-	0	ID=cds3818;Parent=gene3883;Dbxref=GOA:Q8ZA87,InterPro:IPR001048,InterPro:IPR004662,PDB:3T7B,NCBI_GP:CAL22509.1;Name=CAL22509.1;Note=Similar to Escherichia coli acetylglutamate kinase ArgB SW:ARGB_ECOLI (P11445) (258 aa) fasta scores: E(): 0%2C84.7%25 id in 255 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) acetylglutamate kinase ArgB SW:ARGB_BUCAI (P57157) (257 aa) fasta scores: E(): 0%2C 67.3%25 id in 257 aa;gbkey=CDS;gene=argB;product=acetylglutamate kinase;protein_id=CAL22509.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4410630	4411229	.	-	.	ID=id9406;Note=Pfam match to entry PF00696 aakinase%2C Amino acid kinase family%2C score 102.00%2C E-value 1.2e-26;gbkey=misc_feature;gene=argB;inference=protein motif:PF00696
AL590842.1	EMBL	gene	4411401	4412405	.	-	.	ID=gene3884;Name=argC;gbkey=Gene;gene=argC;gene_biotype=protein_coding;locus_tag=YPO3927
AL590842.1	EMBL	CDS	4411401	4412405	.	-	0	ID=cds3819;Parent=gene3884;Dbxref=GOA:Q8ZA86,InterPro:IPR000534,InterPro:IPR000706,InterPro:IPR012280,InterPro:IPR016040,InterPro:IPR023013,NCBI_GP:CAL22510.1;Name=CAL22510.1;Note=Similar to Escherichia coli N-acetyl-gamma-glutamyl-phosphate reductase ArgC SW:ARGC_ECOLI (P11446) (334 aa) fasta scores: E(): 0%2C 78.1%25 id in 334 aa%2C and to Vibrio cholerae N-acetyl-gamma-glutamyl-phosphate reductase VC2644 TR:Q9KNT6 (EMBL:AE004330) (346 aa) fasta scores: E(): 0%2C65.4%25 id in 335 aa;gbkey=CDS;gene=argC;inference=similar to sequence:INSDC:AE004330;product=N-acetyl-gamma-glutamyl-phosphate reductase;protein_id=CAL22510.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4411428	4412402	.	-	.	ID=id9407;Note=Pfam match to entry PF01118 Semialdhyde_dh%2CSemialdehyde dehydrogenase%2C score 282.60%2C E-value 4.9e-81;gbkey=misc_feature;gene=argC;inference=protein motif:PF01118
AL590842.1	EMBL	sequence_feature	4411911	4411961	.	-	.	ID=id9408;Note=PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site.;gbkey=misc_feature;gene=argC;inference=protein motif:ProSite:PS01224
AL590842.1	EMBL	sequence_feature	4412142	4412171	.	-	.	ID=id9409;Note=PS00142 Neutral zinc metallopeptidases%2C zinc-binding region signature.;gbkey=misc_feature;gene=argC;inference=protein motif:ProSite:PS00142
AL590842.1	EMBL	gene	4412650	4413819	.	+	.	ID=gene3885;Name=argE;gbkey=Gene;gene=argE;gene_biotype=protein_coding;locus_tag=YPO3928
AL590842.1	EMBL	CDS	4412650	4413819	.	+	0	ID=cds3820;Parent=gene3885;Dbxref=GOA:Q8ZA85,InterPro:IPR001261,InterPro:IPR002933,InterPro:IPR010169,InterPro:IPR011650,NCBI_GP:CAL22511.1;Name=CAL22511.1;Note=Similar to Escherichia coli acetylornithine deacetylase ArgE SW:ARGE_ECOLI (P23908) (383 aa) fasta scores: E(): 0%2C 77.5%25 id in 386 aa%2C and to Moritella sp 2674 acetylornithinase ArgE TR:Q9K4Z7 (EMBL:AJ252020) (381 aa) fasta scores: E(): 0%2C 58.4%25 id in 385 aa;gbkey=CDS;gene=argE;inference=similar to sequence:INSDC:AJ252020;product=acetylornithine deacetylase;protein_id=CAL22511.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4412683	4413663	.	+	.	ID=id9410;Note=Pfam match to entry PF01546 Peptidase_M20%2C Peptidase family M20/M25/M40%2C score 216.60%2C E-value 3.3e-61;gbkey=misc_feature;gene=argE;inference=protein motif:PF01546
AL590842.1	EMBL	sequence_feature	4412887	4412916	.	+	.	ID=id9411;Note=PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1.;gbkey=misc_feature;gene=argE;inference=protein motif:ProSite:PS00758
AL590842.1	EMBL	sequence_feature	4412992	4413105	.	+	.	ID=id9412;Note=PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2.;gbkey=misc_feature;gene=argE;inference=protein motif:ProSite:PS00759
AL590842.1	EMBL	gene	4414193	4416829	.	+	.	ID=gene3886;Name=glu;gbkey=Gene;gene=glu;gene_biotype=protein_coding;gene_synonym=ppc;locus_tag=YPO3929
AL590842.1	EMBL	CDS	4414193	4416829	.	+	0	ID=cds3821;Parent=gene3886;Dbxref=GOA:Q8ZA84,InterPro:IPR015813,InterPro:IPR018129,InterPro:IPR021135,InterPro:IPR022805,NCBI_GP:CAL22512.1;Name=CAL22512.1;Note=Similar to Escherichia coli phosphoenolpyruvate carboxylase Ppc SW:CAPP_ECOLI (P00864) (883 aa) fasta scores: E(): 0%2C 82.1%25 id in 883 aa%2C and to Vibrio cholerae phosphoenolpyruvate carboxylase VC2646 TR:Q9KNT4 (EMBL:AE004331) (887 aa) fasta scores: E(): 0%2C 65.6%25 id in 882 aa;gbkey=CDS;gene=glu;inference=similar to sequence:INSDC:AE004331;product=phosphoenolpyruvate carboxylase;protein_id=CAL22512.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4414562	4415113	.	+	.	ID=id9413;Note=Pfam match to entry PF00311 PEPcase%2CPhosphoenolpyruvate carboxylase%2C score 150.70%2C E-value 6.2e-45;gbkey=misc_feature;gene=glu;inference=protein motif:PF00311
AL590842.1	EMBL	sequence_feature	4414589	4414624	.	+	.	ID=id9414;Note=PS00781 Phosphoenolpyruvate carboxylase active site 1.;gbkey=misc_feature;gene=glu;inference=protein motif:ProSite:PS00781
AL590842.1	EMBL	sequence_feature	4415117	4416742	.	+	.	ID=id9415;Note=Pfam match to entry PF00311 PEPcase%2CPhosphoenolpyruvate carboxylase%2C score 640.20%2C E-value 2.2e-191;gbkey=misc_feature;gene=glu;inference=protein motif:PF00311
AL590842.1	EMBL	sequence_feature	4415798	4415836	.	+	.	ID=id9416;Note=PS00393 Phosphoenolpyruvate carboxylase active site 2.;gbkey=misc_feature;gene=glu;inference=protein motif:ProSite:PS00393
AL590842.1	EMBL	sequence_feature	4417505	4418968	.	+	.	ID=id9417;Note=IS1397-like insertion element: IS1661;gbkey=misc_feature
AL590842.1	EMBL	INVERTED	4417505	4417538	.	+	.	ID=id9418;Note=Inverted repeat for IS1661 insertion element;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	4417571	4418086	.	+	.	ID=gene3887;Name=YPO3931;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3931
AL590842.1	EMBL	CDS	4417571	4418086	.	+	0	ID=cds3822;Parent=gene3887;Dbxref=GOA:Q74RD6,InterPro:IPR009057,InterPro:IPR010921,InterPro:IPR011991,UniProtKB/TrEMBL:Q74RD6,NCBI_GP:CAL22513.1;Name=CAL22513.1;Note=Similar to Escherichia coli insertion element IS1397 OrfA hypothetical 20.1 kDa protein SW:YI9A_ECOLI (Q47309) (173 aa) fasta scores: E(): 2.3e-20%2C 39.6%25 id in 169 aa;gbkey=CDS;product=insertion element IS1661 DNA-binding protein;protein_id=CAL22513.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4417628	4417693	.	+	.	ID=id9419;Note=Predicted helix-turn-helix motif with score 1691 (+4.95 SD) at aa 20-41%2C sequence ATLRETARQFSVGKSPLTRWIR;gbkey=misc_feature
AL590842.1	EMBL	gene	4418140	4418925	.	+	.	ID=gene3888;Name=YPO3932;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3932
AL590842.1	EMBL	CDS	4418140	4418925	.	+	0	ID=cds3823;Parent=gene3888;Dbxref=GOA:Q7CKI6,InterPro:IPR001584,InterPro:IPR012337,InterPro:IPR025948,UniProtKB/TrEMBL:Q7CKI6,NCBI_GP:CAL22514.1;Name=CAL22514.1;Note=Similar to Escherichia coli insertion sequence IS1397 transposase%2C OrfB TR:Q47310 (EMBL:X92970) (240 aa) fasta scores: E(): 0%2C 53.0%25 id in 234 aa;gbkey=CDS;inference=similar to sequence:INSDC:X92970;product=transposase for insertion sequence IS1661;protein_id=CAL22514.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4418428	4418907	.	+	.	ID=id9420;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 141.50%2C E-value 9.6e-40;gbkey=misc_feature;inference=protein motif:PF00665
AL590842.1	EMBL	INVERTED	4418934	4418968	.	-	.	ID=id9421;Note=Inverted repeat for IS1661 insertion element;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	4419280	4419711	.	-	.	ID=gene3889;Name=YPO3934;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3934
AL590842.1	EMBL	CDS	4419280	4419711	.	-	0	ID=cds3824;Parent=gene3889;Dbxref=UniProtKB/TrEMBL:Q7CFY1,NCBI_GP:CAL22515.1;Name=CAL22515.1;Note=doubtful CDS with no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22515.1;transl_table=11
AL590842.1	EMBL	repeat_region	4419711	4420226	.	-	.	ID=id9422;Note=Repeated sequence thought to encode a possible membrane protein with no database hits. This sequence is repeated at positions :3197462..3197890%2C 4366790..4367265%2C4367331..4367806%2C 4367872..4368406 and complement(4484307..4484653);gbkey=repeat_region
AL590842.1	EMBL	gene	4419714	4420178	.	-	.	ID=gene3890;Name=YPO3935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3935
AL590842.1	EMBL	CDS	4419714	4420178	.	-	0	ID=cds3825;Parent=gene3890;Dbxref=InterPro:IPR010351,UniProtKB/TrEMBL:Q0WA82,NCBI_GP:CAL22516.1;Name=CAL22516.1;Note=Poor database matches%2C similar to Escherichia coli O157:H7 hypothetical protein Z5334 TR:AAG59010 (EMBL:AE005613) (163 aa) fasta scores: E(): 4e-08%2C 29.5%25 id in 156 aa. Similar to YPO3895 (72.5%25 identity in 160 aa overlap)%2C YPO3894 (66.0%25 identity in 159 aa overlap)%2CYPO2860 (55.7%25 identity in 158 aa overlap) and YPO3893 (64.5%25 identity in 124 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AE005613;product=putative membrane protein;protein_id=CAL22516.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4420098	4420154	.	-	.	ID=id9423;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4420487	4420861	.	-	.	ID=gene3891;Name=YPO3936;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3936
AL590842.1	EMBL	CDS	4420487	4420861	.	-	0	ID=cds3826;Parent=gene3891;Dbxref=UniProtKB/TrEMBL:Q7CFY2,NCBI_GP:CAL22517.1;Name=CAL22517.1;Note=Poor database matches%2C similar to N-terminus of Staphylococcus aureus receptor histidine kinase AgrC TR:AAG03057 (EMBL:AF288215) (411 aa) fasta scores: E(): 4.4%2C 23.7%25 id in 114 aa. Doubtful CDS;gbkey=CDS;inference=similar to sequence:INSDC:AF288215;product=putative membrane protein;protein_id=CAL22517.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4420538	4420603	.	-	.	ID=id9424;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4420625	4420681	.	-	.	ID=id9425;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4420712	4420777	.	-	.	ID=id9426;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4421260	4422681	.	+	.	ID=gene3892;Name=glpD;gbkey=Gene;gene=glpD;gene_biotype=protein_coding;gene_synonym=glyD;locus_tag=YPO3937
AL590842.1	EMBL	CDS	4421260	4422681	.	+	0	ID=cds3827;Parent=gene3892;Dbxref=GOA:Q0WA80,InterPro:IPR000447,InterPro:IPR006076,UniProtKB/TrEMBL:Q0WA80,NCBI_GP:CAL22518.1;Name=CAL22518.1;Note=Similar to Escherichia coli aerobic glycerol-3-phosphate dehydrogenase GlpD SW:GLPD_ECOLI (P13035) (501 aa) fasta scores: E(): 0%2C 75.1%25 id in 473 aa%2Cand to Pseudomonas aeruginosa glycerol-3-phosphate dehydrogenase GlpD TR:AAG06972 (EMBL:L06231) (512 aa) fasta scores: E(): 0%2C 59.1%25 id in 464 aa. CDS is truncated at the N-terminus in comparison to other orthologues. Effect on function not known%3B~was marked partial;gbkey=CDS;gene=glpD;inference=similar to sequence:INSDC:L06231;product=aerobic glycerol-3-phosphate dehydrogenase (partial);protein_id=CAL22518.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4421260	4422642	.	+	.	ID=id9427;Note=Pfam match to entry PF01224 FAD_Gly3P_dh%2CFAD-dependent glycerol-3-phosphate dehydrogenase%2C score 658.30%2C E-value 4e-194;gbkey=misc_feature;gene=glpD;inference=protein motif:PF01224
AL590842.1	EMBL	sequence_feature	4422220	4422252	.	+	.	ID=id9428;Note=PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2.;gbkey=misc_feature;gene=glpD;inference=protein motif:ProSite:PS00978
AL590842.1	EMBL	gene	4422844	4425291	.	-	.	ID=gene3893;Name=glgP;gbkey=Gene;gene=glgP;gene_biotype=protein_coding;gene_synonym=glgY;locus_tag=YPO3938
AL590842.1	EMBL	CDS	4422844	4425291	.	-	0	ID=cds3828;Parent=gene3893;Dbxref=GOA:Q0WA79,InterPro:IPR000811,InterPro:IPR011833,UniProtKB/TrEMBL:Q0WA79,NCBI_GP:CAL22519.1;Name=CAL22519.1;Note=Similar to Escherichia coli glycogen phosphorylase GlgP SW:PHSG_ECOLI (P13031) (815 aa) fasta scores: E(): 0%2C79.4%25 id in 815 aa%2C and to Pasteurella multocida glycogen phosphorylase GlgP TR:AAK02629 (EMBL:AE006090) (818 aa) fasta scores: E(): 0%2C 62.4%25 id in 812 aa;gbkey=CDS;gene=glgP;inference=similar to sequence:INSDC:AE006090;product=glycogen phosphorylase;protein_id=CAL22519.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4422856	4424991	.	-	.	ID=id9429;Note=Pfam match to entry PF00343 phosphorylase%2CCarbohydrate phosphorylases%2C score 1763.20%2C E-value 0;gbkey=misc_feature;gene=glgP;inference=protein motif:PF00343
AL590842.1	EMBL	sequence_feature	4423294	4423332	.	-	.	ID=id9430;Note=PS00102 Phosphorylase pyridoxal-phosphate attachment site.;gbkey=misc_feature;gene=glgP;inference=protein motif:ProSite:PS00102
AL590842.1	EMBL	gene	4425460	4426890	.	-	.	ID=gene3894;Name=glgA;gbkey=Gene;gene=glgA;gene_biotype=protein_coding;locus_tag=YPO3939
AL590842.1	EMBL	CDS	4425460	4426890	.	-	0	ID=cds3829;Parent=gene3894;Dbxref=GOA:Q8ZA78,InterPro:IPR001296,InterPro:IPR011835,InterPro:IPR013534,NCBI_GP:CAL22520.1;Name=CAL22520.1;Note=Similar to Escherichia coli glycogen synthase GlgA SW:GLGA_ECOLI (P08323) (477 aa) fasta scores: E(): 0%2C 71.4%25 id in 476 aa%2C and to Pasteurella multocida glycogen synthase GlgA TR:AAK02628 (EMBL:AE006090) (480 aa) fasta scores: E(): 0%2C 58.2%25 id in 476 aa;gbkey=CDS;gene=glgA;inference=similar to sequence:INSDC:AE006090;product=glycogen synthase;protein_id=CAL22520.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4425526	4426035	.	-	.	ID=id9431;Note=Pfam match to entry PF00534 Glycos_transf_1%2CGlycosyl transferases group 1%2C score 43.70%2C E-value 6.6e-11;gbkey=misc_feature;gene=glgA;inference=protein motif:PF00534
AL590842.1	EMBL	gene	4426958	4428388	.	-	.	ID=gene3895;Name=glgC;gbkey=Gene;gene=glgC;gene_biotype=protein_coding;locus_tag=YPO3940
AL590842.1	EMBL	CDS	4426958	4428388	.	-	0	ID=cds3830;Parent=gene3895;Dbxref=GOA:Q8ZA77,InterPro:IPR005835,InterPro:IPR005836,InterPro:IPR011004,InterPro:IPR011831,InterPro:IPR023049,InterPro:IPR029044,NCBI_GP:CAL22521.1;Name=CAL22521.1;Note=Similar to Escherichia coli glucose-1-phosphate adenylyltransferase GlgC SW:GLGC_ECOLI (P00584) (430 aa) fasta scores: E(): 0%2C 77.7%25 id in 412 aa%2C and to Salmonella typhimurium glucose-1-phosphate adenylyltransferase GlgC SW:GLGC_SALTY (P05415) (431 aa) fasta scores: E(): 0%2C 74.8%25 id in 413 aa. Similarity to other orthologues decreases at the C-terminus. CDS also contains extra amino acid residues. Possible frameshift after codon 411. Frame shift occurs at a poly G nonamer. Effect on function not known;gbkey=CDS;gene=glgC;product=glucose-1-phosphate adenylyltransferase;protein_id=CAL22521.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4427510	4428328	.	-	.	ID=id9432;Note=Pfam match to entry PF00483 NTP_transferase%2CNucleotidyl transferase%2C score 302.90%2C E-value 3.9e-87;gbkey=misc_feature;gene=glgC;inference=protein motif:PF00483
AL590842.1	EMBL	sequence_feature	4427726	4427758	.	-	.	ID=id9433;Note=PS00810 ADP-glucose pyrophosphorylase signature 3.;gbkey=misc_feature;gene=glgC;inference=protein motif:ProSite:PS00810
AL590842.1	EMBL	sequence_feature	4428026	4428052	.	-	.	ID=id9434;Note=PS00809 ADP-glucose pyrophosphorylase signature 2.;gbkey=misc_feature;gene=glgC;inference=protein motif:ProSite:PS00809
AL590842.1	EMBL	sequence_feature	4428254	4428313	.	-	.	ID=id9435;Note=PS00808 ADP-glucose pyrophosphorylase signature 1.;gbkey=misc_feature;gene=glgC;inference=protein motif:ProSite:PS00808
AL590842.1	EMBL	gene	4428398	4430386	.	-	.	ID=gene3896;Name=glgX;gbkey=Gene;gene=glgX;gene_biotype=protein_coding;locus_tag=YPO3941
AL590842.1	EMBL	CDS	4428398	4430386	.	-	0	ID=cds3831;Parent=gene3896;Dbxref=GOA:Q8ZA76,InterPro:IPR004193,InterPro:IPR006047,InterPro:IPR011837,InterPro:IPR013781,InterPro:IPR013783,InterPro:IPR014756,InterPro:IPR015902,InterPro:IPR017853,InterPro:IPR022844,NCBI_GP:CAL22522.1;Name=CAL22522.1;Note=Similar to Arthrobacter sp Q36 glycogen debranching enzyme%2C isoamylase TreX TR:Q9LC80 (EMBL:AB031392) (823 aa) fasta scores: E(): 0%2C 45.2%25 id in 657 aa%2C and to Escherichia coli glycogen operon protein GlgX SW:GLGX_ECOLI (P15067) (657 aa) fasta scores: E(): 0%2C 60.8%25 id in 658 aa;gbkey=CDS;gene=glgX;inference=similar to sequence:INSDC:AB031392;product=putative alpha-amylase;protein_id=CAL22522.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4428545	4429996	.	-	.	ID=id9436;Note=Pfam match to entry PF00128 alpha-amylase%2C Alpha amylase%2C score -25.30%2C E-value 4.6e-06;gbkey=misc_feature;gene=glgX;inference=protein motif:PF00128
AL590842.1	EMBL	sequence_feature	4429733	4429786	.	-	.	ID=id9437;Note=PS00062 Aldo/keto reductase family signature 2.;gbkey=misc_feature;gene=glgX;inference=protein motif:ProSite:PS00062
AL590842.1	EMBL	gene	4430388	4432571	.	-	.	ID=gene3897;Name=glgB;gbkey=Gene;gene=glgB;gene_biotype=protein_coding;locus_tag=YPO3942
AL590842.1	EMBL	CDS	4430388	4432571	.	-	0	ID=cds3832;Parent=gene3897;Dbxref=GOA:Q8ZA75,InterPro:IPR004193,InterPro:IPR006047,InterPro:IPR006048,InterPro:IPR006407,InterPro:IPR013780,InterPro:IPR013781,InterPro:IPR013783,InterPro:IPR014756,InterPro:IPR015902,InterPro:IPR017853,NCBI_GP:CAL22523.1;Name=CAL22523.1;Note=Similar to Escherichia coli 1%2C4-alpha-glucan branching enzyme GlgB SW:GLGB_ECOLI (P07762) (728 aa) fasta scores: E(): 0%2C 70.1%25 id in 726 aa%2C and to Haemophilus influenzae 1%2C4-alpha-glucan branching enzyme GlgB SW:GLGB_HAEIN (P45177) (730 aa) fasta scores: E(): 0%2C 63.4%25 id in 725 aa;gbkey=CDS;gene=glgB;product=1%2C4-alpha-glucan branching enzyme;protein_id=CAL22523.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4430568	4431842	.	-	.	ID=id9438;Note=Pfam match to entry PF00128 alpha-amylase%2C Alpha amylase%2C score -34.40%2C E-value 1.2e-05;gbkey=misc_feature;gene=glgB;inference=protein motif:PF00128
AL590842.1	EMBL	gene	4433077	4434774	.	+	.	ID=gene3898;Name=YPO3943;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3943
AL590842.1	EMBL	CDS	4433077	4434774	.	+	0	ID=cds3833;Parent=gene3898;Dbxref=GOA:Q7CFY3,InterPro:IPR003018,InterPro:IPR003594,InterPro:IPR010559,InterPro:IPR011620,InterPro:IPR029016,UniProtKB/TrEMBL:Q7CFY3,NCBI_GP:CAL22524.1;Name=CAL22524.1;Note=Similar to Staphylococcus aureus autolysis regulatory protein LytS TR:Q53705 (EMBL:L42945) (584 aa) fasta scores: E(): 0%2C 30.5%25 id in 583 aa%2C and to Escherichia coli hypothetical protein YehU SW:YEHU_ECOLI (P33357) (561 aa) fasta scores: E(): 0%2C 67.8%25 id in 552 aa;gbkey=CDS;inference=similar to sequence:INSDC:L42945;product=putative membrane protein;protein_id=CAL22524.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4433095	4433154	.	+	.	ID=id9439;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4433212	4433271	.	+	.	ID=id9440;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4433305	4433373	.	+	.	ID=id9441;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4433401	4433469	.	+	.	ID=id9442;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4433488	4433556	.	+	.	ID=id9443;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4433599	4433667	.	+	.	ID=id9444;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4434982	4444023	.	-	.	ID=gene3899;Name=YPO3944;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3944
AL590842.1	EMBL	CDS	4434982	4444023	.	-	0	ID=cds3834;Parent=gene3899;Dbxref=GOA:Q7CFY4,InterPro:IPR003344,InterPro:IPR003535,InterPro:IPR008964,InterPro:IPR016186,InterPro:IPR018392,InterPro:IPR024519,UniProtKB/TrEMBL:Q7CFY4,NCBI_GP:CAL22525.1;Name=CAL22525.1;Note=N-terminal region similar to Yersinia pestis invasin Inv TR:Q56937 (EMBL:U22457) (987 aa) fasta scores: E(): 0%2C37.1%25 id in 844 aa. Full length CDS similar to Escherichia coli probable invasin o2383 TR:P76347 (EMBL:AE000289) (2383 aa) fasta scores: E(): 0%2C 29.5%25 id in 2456 aa. Note this protein is highly repetitive and contains >22 large degenerate repeats spanning much of the predicted protein product. The most highly conserved repeat region is represented by the tandem repeat feature.;gbkey=CDS;inference=similar to sequence:INSDC:U22457;product=putative invasin;protein_id=CAL22525.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4435591	4435881	.	-	.	ID=id9445;Note=Pfam match to entry PF02369 Big_1%2C Putative peptidoglycan binding domain%2C score 32.10%2C E-value 1.3e-05;gbkey=misc_feature;inference=protein motif:PF02369
AL590842.1	EMBL	sequence_feature	4435885	4436187	.	-	.	ID=id9446;Note=Pfam match to entry PF02369 Big_1%2C Putative peptidoglycan binding domain%2C score 31.90%2C E-value 1.4e-05;gbkey=misc_feature;inference=protein motif:PF02369
AL590842.1	EMBL	sequence_feature	4436497	4436781	.	-	.	ID=id9447;Note=Pfam match to entry PF02369 Big_1%2C Putative peptidoglycan binding domain%2C score 38.60%2C E-value 1.5e-07;gbkey=misc_feature;inference=protein motif:PF02369
AL590842.1	EMBL	sequence_feature	4436803	4437096	.	-	.	ID=id9448;Note=Pfam match to entry PF02369 Big_1%2C Putative peptidoglycan binding domain%2C score 40.90%2C E-value 2.9e-08;gbkey=misc_feature;inference=protein motif:PF02369
AL590842.1	EMBL	sequence_feature	4437385	4437690	.	-	.	ID=id9449;Note=Pfam match to entry PF02369 Big_1%2C Putative peptidoglycan binding domain%2C score 29.30%2C E-value 8.7e-05;gbkey=misc_feature;inference=protein motif:PF02369
AL590842.1	EMBL	sequence_feature	4437991	4438293	.	-	.	ID=id9450;Note=Pfam match to entry PF02369 Big_1%2C Putative peptidoglycan binding domain%2C score 43.70%2C E-value 4.2e-09;gbkey=misc_feature;inference=protein motif:PF02369
AL590842.1	EMBL	sequence_feature	4438600	4438887	.	-	.	ID=id9451;Note=Pfam match to entry PF02369 Big_1%2C Putative peptidoglycan binding domain%2C score 31.00%2C E-value 2.7e-05;gbkey=misc_feature;inference=protein motif:PF02369
AL590842.1	EMBL	sequence_feature	4439473	4439766	.	-	.	ID=id9452;Note=Pfam match to entry PF02369 Big_1%2C Putative peptidoglycan binding domain%2C score 34.10%2C E-value 3.3e-06;gbkey=misc_feature;inference=protein motif:PF02369
AL590842.1	EMBL	sequence_feature	4439767	4440042	.	-	.	ID=id9453;Note=Pfam match to entry PF02369 Big_1%2C Putative peptidoglycan binding domain%2C score 33.80%2C E-value 3.9e-06;gbkey=misc_feature;inference=protein motif:PF02369
AL590842.1	EMBL	sequence_feature	4440340	4440621	.	-	.	ID=id9454;Note=Pfam match to entry PF02369 Big_1%2C Putative peptidoglycan binding domain%2C score 35.80%2C E-value 1e-06;gbkey=misc_feature;inference=protein motif:PF02369
AL590842.1	EMBL	sequence_feature	4440631	4440909	.	-	.	ID=id9455;Note=Pfam match to entry PF02369 Big_1%2C Putative peptidoglycan binding domain%2C score 36.90%2C E-value 4.4e-07;gbkey=misc_feature;inference=protein motif:PF02369
AL590842.1	EMBL	sequence_feature	4440919	4441209	.	-	.	ID=id9456;Note=Pfam match to entry PF02369 Big_1%2C Putative peptidoglycan binding domain%2C score 31.80%2C E-value 1.6e-05;gbkey=misc_feature;inference=protein motif:PF02369
AL590842.1	EMBL	sequence_feature	4441210	4441494	.	-	.	ID=id9457;Note=Pfam match to entry PF02369 Big_1%2C Putative peptidoglycan binding domain%2C score 45.50%2C E-value 1.2e-09;gbkey=misc_feature;inference=protein motif:PF02369
AL590842.1	EMBL	sequence_feature	4441801	4442079	.	-	.	ID=id9458;Note=Pfam match to entry PF02369 Big_1%2C Putative peptidoglycan binding domain%2C score 56.20%2C E-value 7.2e-13;gbkey=misc_feature;inference=protein motif:PF02369
AL590842.1	EMBL	sequence_feature	4442101	4442382	.	-	.	ID=id9459;Note=Pfam match to entry PF02369 Big_1%2C Putative peptidoglycan binding domain%2C score 55.00%2C E-value 1.6e-12;gbkey=misc_feature;inference=protein motif:PF02369
AL590842.1	EMBL	sequence_feature	4443610	4443753	.	-	.	ID=id9460;Note=Pfam match to entry PF01476 LysM%2C Putative peptidoglycan binding domain%2C score 37.10%2C E-value 4.1e-07;gbkey=misc_feature;inference=protein motif:PF01476
AL590842.1	EMBL	sequence_feature	4443847	4443912	.	-	.	ID=id9461;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4445294	4445668	.	+	.	ID=gene3900;Name=YPO3945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3945
AL590842.1	EMBL	CDS	4445294	4445668	.	+	0	ID=cds3835;Parent=gene3900;Dbxref=UniProtKB/TrEMBL:Q7CFY5,NCBI_GP:CAL22526.1;Name=CAL22526.1;Note=doubtful CDS with no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22526.1;transl_table=11
AL590842.1	EMBL	gene	4445759	4446046	.	-	.	ID=gene3901;Name=YPO3946;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3946
AL590842.1	EMBL	CDS	4445759	4446046	.	-	0	ID=cds3836;Parent=gene3901;Dbxref=UniProtKB/TrEMBL:Q7CFY6,NCBI_GP:CAL22527.1;Name=CAL22527.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22527.1;transl_table=11
AL590842.1	EMBL	gene	4446053	4446427	.	-	.	ID=gene3902;Name=YPO3947;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3947
AL590842.1	EMBL	CDS	4446053	4446427	.	-	0	ID=cds3837;Parent=gene3902;Dbxref=UniProtKB/TrEMBL:Q7CFY7,NCBI_GP:CAL22528.1;Name=CAL22528.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22528.1;transl_table=11
AL590842.1	EMBL	gene	4446668	4446949	.	-	.	ID=gene3903;Name=YPO3948;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3948
AL590842.1	EMBL	CDS	4446668	4446949	.	-	0	ID=cds3838;Parent=gene3903;Dbxref=UniProtKB/TrEMBL:Q74QZ2,NCBI_GP:CAL22529.1;Name=CAL22529.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22529.1;transl_table=11
AL590842.1	EMBL	gene	4447118	4448221	.	-	.	ID=gene3904;Name=asd;gbkey=Gene;gene=asd;gene_biotype=protein_coding;locus_tag=YPO3949
AL590842.1	EMBL	CDS	4447118	4448221	.	-	0	ID=cds3839;Parent=gene3904;Dbxref=GOA:Q9ETB0,InterPro:IPR000319,InterPro:IPR000534,InterPro:IPR011534,InterPro:IPR012080,InterPro:IPR012280,InterPro:IPR016040,UniProtKB/TrEMBL:Q9ETB0,NCBI_GP:CAL22530.1;Name=CAL22530.1;Note=Previously sequenced as Yersinia pestis and Yersinia pseudotuberculosis aspartate semialdehyde dehydrogenase Asd TR:AAG22007 (EMBL:AF282318) (367 aa) fasta scores: E(): 0%2C100.0%25 id in 367 aa. Similar to Escherichia coli aspartate-semialdehyde dehydrogenase Asd SW:DHAS_ECOLI (P00353) (367 aa) fasta scores: E(): 0%2C 83.6%25 id in 366 aa;gbkey=CDS;gene=asd;inference=similar to sequence:INSDC:AF282318;product=aspartate semialdehyde dehydrogenase;protein_id=CAL22530.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4447139	4448218	.	-	.	ID=id9462;Note=Pfam match to entry PF01118 Semialdhyde_dh%2CSemialdehyde dehydrogenase%2C score 451.00%2C E-value 9.9e-132;gbkey=misc_feature;gene=asd;inference=protein motif:PF01118
AL590842.1	EMBL	sequence_feature	4447397	4447441	.	-	.	ID=id9463;Note=PS01103 Aspartate-semialdehyde dehydrogenase signature.;gbkey=misc_feature;gene=asd;inference=protein motif:ProSite:PS01103
AL590842.1	EMBL	gene	4448588	4449172	.	+	.	ID=gene3905;Name=yhgN;gbkey=Gene;gene=yhgN;gene_biotype=protein_coding;locus_tag=YPO3950
AL590842.1	EMBL	CDS	4448588	4449172	.	+	0	ID=cds3840;Parent=gene3905;Dbxref=GOA:Q7CFY9,InterPro:IPR002771,UniProtKB/TrEMBL:Q7CFY9,NCBI_GP:CAL22531.1;Name=CAL22531.1;Note=Similar to Escherichia coli hypothetical protein YhgN SW:YHGN_ECOLI (P46851) (197 aa) fasta scores: E(): 0%2C77.6%25 id in 192 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) hypothetical protein BU449 SW:Y449_BUCAI (P57524) (182 aa) fasta scores: E(): 0%2C 72.4%25 id in 181 aa;gbkey=CDS;gene=yhgN;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL22531.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4448591	4449163	.	+	.	ID=id9464;Note=Pfam match to entry PF01914 UPF0056%2C Uncharacterised protein family UPF0056%2C score 254.10%2C E-value 1.9e-72;gbkey=misc_feature;gene=yhgN;inference=protein motif:PF01914
AL590842.1	EMBL	sequence_feature	4448606	4448662	.	+	.	ID=id9465;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhgN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4448705	4448773	.	+	.	ID=id9466;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhgN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4448792	4448851	.	+	.	ID=id9467;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhgN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4448894	4448962	.	+	.	ID=id9468;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhgN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4448981	4449040	.	+	.	ID=id9469;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhgN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4449080	4449109	.	+	.	ID=id9470;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.;gbkey=misc_feature;gene=yhgN;inference=protein motif:ProSite:PS00339
AL590842.1	EMBL	sequence_feature	4449098	4449166	.	+	.	ID=id9471;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhgN;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4449412	4449816	.	-	.	ID=gene3906;Name=YPO3951;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3951
AL590842.1	EMBL	CDS	4449412	4449816	.	-	0	ID=cds3841;Parent=gene3906;Dbxref=UniProtKB/TrEMBL:Q7CFZ0,NCBI_GP:CAL22532.1;Name=CAL22532.1;Note=no significant database hits to the full length CDS. N-terminal region is similar to Pseudomonas aeruginosa hypothetical protein PA0092 TR:AAG03482 (EMBL:AE004448) (94 aa) fasta scores: E(): 1.4e-06%2C 38.6%25 id in 101 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004448;product=hypothetical protein;protein_id=CAL22532.1;transl_table=11
AL590842.1	EMBL	gene	4450187	4450420	.	-	.	ID=gene3907;Name=YPO3952;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3952
AL590842.1	EMBL	CDS	4450187	4450420	.	-	0	ID=cds3842;Parent=gene3907;Dbxref=UniProtKB/TrEMBL:Q7CFZ1,NCBI_GP:CAL22533.1;Name=CAL22533.1;Note=no significant database hits to the full length CDS. Similar to the N-terminal regions of YPO0639 (59.5%25 identity in 79 aa overlap) and YPO1258 (59.5%25 identity in 79 aa overlap);gbkey=CDS;product=hypothetical protein;protein_id=CAL22533.1;transl_table=11
AL590842.1	EMBL	gene	4450602	4451105	.	-	.	ID=gene3908;Name=YPO3953;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3953
AL590842.1	EMBL	CDS	4450602	4451105	.	-	0	ID=cds3843;Parent=gene3908;Dbxref=GOA:Q7CFZ2,InterPro:IPR000623,InterPro:IPR006001,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CFZ2,NCBI_GP:CAL22534.1;Name=CAL22534.1;Note=Similar to Escherichia coli thermosensitive gluconokinase IdnK SW:IDNK_ECOLI (P39208) (187 aa) fasta scores: E(): 0%2C 59.1%25 id in 159 aa%2C and to Escherichia coli thermoresistant gluconokinase GntK SW:GNTK_ECOLI (P46859) (175 aa) fasta scores: E(): 0%2C 59.2%25 id in 152 aa. Similar to YPO2540 (66.3%25 identity in 160 aa overlap);gbkey=CDS;product=putative gluconokinase;protein_id=CAL22534.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4451055	4451078	.	-	.	ID=id9472;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4451322	4452638	.	+	.	ID=gene3909;Name=gntM;gbkey=Gene;gene=gntM;gene_biotype=protein_coding;gene_synonym=gntT,usgA;locus_tag=YPO3954
AL590842.1	EMBL	CDS	4451322	4452638	.	+	0	ID=cds3844;Parent=gene3909;Dbxref=GOA:Q7CFZ3,InterPro:IPR003474,UniProtKB/TrEMBL:Q7CFZ3,NCBI_GP:CAL22535.1;Name=CAL22535.1;Note=Similar to Escherichia coli high-affinity gluconate transporter GntT SW:GNTT_ECOLI (P39835) (437 aa) fasta scores: E(): 0%2C 84.5%25 id in 438 aa%2C and to Escherichia coli Gnt-II system L-idonate transporter IdnT SW:IDNT_ECOLI (P39344) (439 aa) fasta scores: E(): 0%2C 61.2%25 id in 438 aa;gbkey=CDS;gene=gntM;inference=protein motif:TMHMM:2.0;product=putative gluconate permease;protein_id=CAL22535.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4451322	4452632	.	+	.	ID=id9473;Note=Pfam match to entry PF02447 GntP_permease%2C %2C score 926.00%2C E-value 1.1e-274;gbkey=misc_feature;gene=gntM;inference=protein motif:PF02447
AL590842.1	EMBL	sequence_feature	4451364	4451432	.	+	.	ID=id9474;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=gntM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4451469	4451537	.	+	.	ID=id9475;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=gntM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4451640	4451708	.	+	.	ID=id9476;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=gntM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4451727	4451786	.	+	.	ID=id9477;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=gntM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4451844	4451912	.	+	.	ID=id9478;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=gntM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4451979	4452047	.	+	.	ID=id9479;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=gntM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4452090	4452158	.	+	.	ID=id9480;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=gntM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4452216	4452284	.	+	.	ID=id9481;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=gntM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4452366	4452434	.	+	.	ID=id9482;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=gntM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4452453	4452521	.	+	.	ID=id9483;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=gntM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4452564	4452632	.	+	.	ID=id9484;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=gntM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4452730	4453725	.	-	.	ID=gene3910;Name=gntR;gbkey=Gene;gene=gntR;gene_biotype=protein_coding;locus_tag=YPO3955
AL590842.1	EMBL	CDS	4452730	4453725	.	-	0	ID=cds3845;Parent=gene3910;Dbxref=GOA:Q7CFZ4,InterPro:IPR000843,InterPro:IPR001761,InterPro:IPR010982,InterPro:IPR028082,UniProtKB/TrEMBL:Q7CFZ4,NCBI_GP:CAL22536.1;Name=CAL22536.1;Note=Similar to Escherichia coli gluconate utilization system Gnt-I transcriptional repressor GntR SW:GNTR_ECOLI (P46860) (331 aa) fasta scores: E(): 0%2C 79.1%25 id in 325 aa%2Cand to Vibrio cholerae gluconate utilization system Gnt-I transcriptional repressor VC0289 TR:Q9KV68 (EMBL:AE004117) (332 aa) fasta scores: E(): 0%2C 52.5%25 id in 324 aa;gbkey=CDS;gene=gntR;inference=similar to sequence:INSDC:AE004117;product=gluconate utilization system Gnt-I transcriptional repressor;protein_id=CAL22536.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4452823	4453542	.	-	.	ID=id9485;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 145.80%2C E-value 7.6e-40;gbkey=misc_feature;gene=gntR;inference=protein motif:PF00532
AL590842.1	EMBL	sequence_feature	4453633	4453704	.	-	.	ID=id9486;Note=Pfam match to entry PF00356 lacI%2C Bacterial regulatory proteins%2C lacI family%2C score 30.50%2C E-value 4.4e-07;gbkey=misc_feature;gene=gntR;inference=protein motif:PF00356
AL590842.1	EMBL	sequence_feature	4453648	4453704	.	-	.	ID=id9487;Note=PS00356 Bacterial regulatory proteins%2C lacI family signature.;gbkey=misc_feature;gene=gntR;inference=protein motif:ProSite:PS00356
AL590842.1	EMBL	gene	4453854	4454549	.	-	.	ID=gene3911;Name=YPO3956;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3956
AL590842.1	EMBL	CDS	4453854	4454549	.	-	0	ID=cds3846;Parent=gene3911;Dbxref=InterPro:IPR003829,InterPro:IPR011051,InterPro:IPR012093,InterPro:IPR014710,UniProtKB/TrEMBL:Q7CFZ5,NCBI_GP:CAL22537.1;Name=CAL22537.1;Note=Similar to Escherichia coli hypothetical protein YhhW SW:YHHW_ECOLI (P46852) (231 aa) fasta scores: E(): 0%2C77.5%25 id in 231 aa%2C and to Synechocystis sp hypothetical protein SLL1773 TR:P73623 (EMBL:D90908) (232 aa) fasta scores: E(): 0%2C 50.4%25 id in 234 aa;gbkey=CDS;inference=similar to sequence:INSDC:D90908;product=conserved hypothetical protein;protein_id=CAL22537.1;transl_table=11
AL590842.1	EMBL	gene	4455044	4455313	.	+	.	ID=gene3912;Name=YPO3957;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3957
AL590842.1	EMBL	CDS	4455044	4455313	.	+	0	ID=cds3847;Parent=gene3912;Dbxref=UniProtKB/TrEMBL:Q74QY2,NCBI_GP:CAL22538.1;Name=CAL22538.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22538.1;transl_table=11
AL590842.1	EMBL	gene	4455313	4456050	.	+	.	ID=gene3913;Name=YPO3958;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3958
AL590842.1	EMBL	CDS	4455313	4456050	.	+	0	ID=cds3848;Parent=gene3913;Dbxref=GOA:Q7CFZ6,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:Q7CFZ6,NCBI_GP:CAL22539.1;Name=CAL22539.1;Note=Similar to Escherichia coli transcriptional regulatory protein OmpR SW:OMPR_ECOLI (P03025) (239 aa) fasta scores: E(): 9.6e-27%2C 37.1%25 id in 237 aa%2C and to Zymomonas mobilis aerobic respiration control protein ArcA TR:Q9X3W0 (EMBL:AF088896) (241 aa) fasta scores: E(): 8.5e-30%2C 39.2%25 id in 240 aa;gbkey=CDS;inference=similar to sequence:INSDC:AF088896;product=putative response regulator protein;protein_id=CAL22539.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4455319	4455657	.	+	.	ID=id9488;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 119.60%2C E-value 5.8e-32;gbkey=misc_feature;inference=protein motif:PF00072
AL590842.1	EMBL	sequence_feature	4455799	4456017	.	+	.	ID=id9489;Note=Pfam match to entry PF00486 trans_reg_C%2CTranscriptional regulatory protein%2C C terminal%2C score 89.90%2C E-value 1.4e-25;gbkey=misc_feature;inference=protein motif:PF00486
AL590842.1	EMBL	gene	4456235	4457242	.	-	.	ID=gene3914;Name=YPO3959;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3959
AL590842.1	EMBL	CDS	4456235	4457242	.	-	0	ID=cds3849;Parent=gene3914;Dbxref=GOA:Q74QY0,InterPro:IPR011611,InterPro:IPR029056,UniProtKB/TrEMBL:Q74QY0,NCBI_GP:CAL22540.1;Name=CAL22540.1;Note=Similar to Lycopersicon esculentum fructokinase Frk1 TR:O04897 (EMBL:U64817) (347 aa) fasta scores: E(): 2.4e-06%2C 26.7%25 id in 318 aa%2C and to Bacillus halodurans possible fructokinase BH1857 TR:Q9KBR8 (EMBL:AP001513) (319 aa) fasta scores: E(): 1.2e-06%2C 28.2%25 id in 298 aa;gbkey=CDS;inference=similar to sequence:INSDC:U64817;product=PfkB family carbohydrate kinase;protein_id=CAL22540.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4456385	4457122	.	-	.	ID=id9490;Note=Pfam match to entry PF00294 pfkB%2C pfkB family carbohydrate kinase%2C score 67.00%2C E-value 4.1e-16;gbkey=misc_feature;inference=protein motif:PF00294
AL590842.1	EMBL	gene	4457252	4458112	.	-	.	ID=gene3915;Name=YPO3960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3960
AL590842.1	EMBL	CDS	4457252	4458112	.	-	0	ID=cds3850;Parent=gene3915;Dbxref=GOA:Q0WA57,InterPro:IPR000771,InterPro:IPR013785,UniProtKB/TrEMBL:Q0WA57,NCBI_GP:CAL22541.1;Name=CAL22541.1;Note=Similar to Escherichia coli tagatose-bisphosphate aldolase AgaY SW:AGAY_ECOLI (P42908) (286 aa) fasta scores: E(): 2.8e-31%2C 37.1%25 id in 286 aa%2C and to Bacillus stearothermophilus fructose-bisphosphate aldolase Fba SW:ALF_BACST (P94453) (287 aa) fasta scores: E(): 0%2C 43.7%25 id in 286 aa;gbkey=CDS;product=putative class-II fructose-bisphosphate aldolase;protein_id=CAL22541.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4457255	4458109	.	-	.	ID=id9491;Note=Pfam match to entry PF01116 F_bP_aldolase%2CFructose-bisphosphate aldolase class-II%2C score 261.80%2CE-value 9e-75;gbkey=misc_feature;inference=protein motif:PF01116
AL590842.1	EMBL	sequence_feature	4457687	4457722	.	-	.	ID=id9492;Note=PS00806 Fructose-bisphosphate aldolase class-II signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00806
AL590842.1	EMBL	gene	4458138	4458821	.	-	.	ID=gene3916;Name=YPO3961;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3961
AL590842.1	EMBL	CDS	4458138	4458821	.	-	0	ID=cds3851;Parent=gene3916;Dbxref=InterPro:IPR010864,InterPro:IPR011051,UniProtKB/TrEMBL:Q7CFZ7,NCBI_GP:CAL22542.1;Name=CAL22542.1;Note=No significant database hits to the full length CDS. Similar to internal region of Ascaris lumbricoides CUT-1-like cuticlin protein precursor ASCUT-1 TR:Q93115 (EMBL:U73005) (385 aa) fasta scores: E(): 1.7%2C 28.9%25 id in 121 aa;gbkey=CDS;inference=similar to sequence:INSDC:U73005;product=hypothetical protein;protein_id=CAL22542.1;transl_table=11
AL590842.1	EMBL	gene	4458896	4459840	.	-	.	ID=gene3917;Name=YPO3962;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3962
AL590842.1	EMBL	CDS	4458896	4459840	.	-	0	ID=cds3852;Parent=gene3917;Dbxref=InterPro:IPR025997,InterPro:IPR028082,UniProtKB/TrEMBL:Q7CFZ8,NCBI_GP:CAL22543.1;Name=CAL22543.1;Note=Similar to Bacillus subtilis D-ribose-binding protein precursor RbsB SW:RBSB_BACSU (P36949) (305 aa) fasta scores: E(): 1.4e-21%2C 35.1%25 id in 279 aa%2C and to Escherichia coli D-ribose-binding periplasmic protein precursor RbsB SW:RBSB_ECOLI (P02925) (296 aa) fasta scores: E(): 9.8e-20%2C 31.6%25 id in 297 aa;gbkey=CDS;product=sugar-binding transport protein;protein_id=CAL22543.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4459013	4459765	.	-	.	ID=id9493;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 50.50%2C E-value 3.8e-11;gbkey=misc_feature;inference=protein motif:PF00532
AL590842.1	EMBL	gene	4459871	4460863	.	-	.	ID=gene3918;Name=YPO3963;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3963
AL590842.1	EMBL	CDS	4459871	4460863	.	-	0	ID=cds3853;Parent=gene3918;Dbxref=GOA:Q7CFZ9,InterPro:IPR001851,UniProtKB/TrEMBL:Q7CFZ9,NCBI_GP:CAL22544.1;Name=CAL22544.1;Note=Similar to Bacillus subtilis ribose transport system permease protein RbsC SW:RBSC_BACSU (P36948) (323 aa) fasta scores: E(): 0%2C 45.3%25 id in 316 aa%2C and to Escherichia coli ribose transport system permease protein RbsC SW:RBSC_ECOLI (P04984) (321 aa) fasta scores: E(): 0%2C 43.3%25 id in 326 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=sugar transport system permease protein;protein_id=CAL22544.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4459904	4459969	.	-	.	ID=id9494;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4459991	4460077	.	-	.	ID=id9495;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4460138	4460203	.	-	.	ID=id9496;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4460285	4460350	.	-	.	ID=id9497;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4460411	4460476	.	-	.	ID=id9498;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4460498	4460563	.	-	.	ID=id9499;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4460609	4460674	.	-	.	ID=id9500;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4460714	4460779	.	-	.	ID=id9501;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4460856	4462379	.	-	.	ID=gene3919;Name=YPO3964;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3964
AL590842.1	EMBL	CDS	4460856	4462379	.	-	0	ID=cds3854;Parent=gene3919;Dbxref=GOA:Q7CG00,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR004087,InterPro:IPR015861,InterPro:IPR017871,InterPro:IPR027417,NCBI_GP:CAL22545.1;Name=CAL22545.1;Note=Similar to Escherichia coli ribose transport ATP-binding protein RbsA SW:RBSA_ECOLI (P04983) (501 aa) fasta scores: E(): 0%2C 43.9%25 id in 492 aa%2C and to Bacillus subtilis ribose transport ATP-binding protein RbsA SW:RBSA_BACSU (P36947) (493 aa) fasta scores: E(): 0%2C 45.9%25 id in 490 aa;gbkey=CDS;product=sugar transport ATP-binding protein;protein_id=CAL22545.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4460961	4461539	.	-	.	ID=id9502;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 111.80%2C E-value 1.3e-29;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	4461144	4461188	.	-	.	ID=id9503;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	4461726	4462286	.	-	.	ID=id9504;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 190.60%2C E-value 2.4e-53;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	4462242	4462265	.	-	.	ID=id9505;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4462568	4465123	.	+	.	ID=gene3920;Name=YPO3965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3965
AL590842.1	EMBL	CDS	4462568	4465123	.	+	0	ID=cds3855;Parent=gene3920;Dbxref=GOA:Q7CG01,InterPro:IPR000014,InterPro:IPR001789,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR011006,UniProtKB/TrEMBL:Q7CG01,NCBI_GP:CAL22546.1;Name=CAL22546.1;Note=Probable hybrid two-component system regulatory protein. CDS contains both sensor histidine kinase domain and response regulator receiver domain. C-terminus is similar to Rhizobium leguminosarum regulatory protein FixL TR:Q52824 (EMBL:Z70305) (641 aa) fasta scores: E(): 0%2C33.3%25 id in 519 aa%2C and to Pseudomonas syringae histidine protein kinase-response regulator hybrid protein CvgsY TR:Q9WWH9 (EMBL:AF133262) (671 aa) fasta scores: E(): 0%2C44.6%25 id in 383 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z70305;product=putative hybrid two-component system regulatory protein;protein_id=CAL22546.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4462610	4462678	.	+	.	ID=id9506;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4463438	4463506	.	+	.	ID=id9507;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4463450	4463662	.	+	.	ID=id9508;Note=Pfam match to entry PF00672 DUF5%2C HAMP domain%2C score 56.70%2C E-value 5.2e-13;gbkey=misc_feature;inference=protein motif:PF00672
AL590842.1	EMBL	sequence_feature	4464086	4464712	.	+	.	ID=id9509;Note=Pfam match to entry PF00512 signal%2C Histidine kinase%2C score 142.80%2C E-value 5.9e-39;gbkey=misc_feature;inference=protein motif:PF00512
AL590842.1	EMBL	sequence_feature	4464779	4465111	.	+	.	ID=id9510;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 39.00%2C E-value 1.1e-07;gbkey=misc_feature;inference=protein motif:PF00072
AL590842.1	EMBL	gene	4465259	4466455	.	-	.	ID=gene3921;Name=YPO3966;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3966
AL590842.1	EMBL	CDS	4465259	4466455	.	-	0	ID=cds3856;Parent=gene3921;Dbxref=GOA:Q0WA51,InterPro:IPR004792,InterPro:IPR013027,InterPro:IPR023166,UniProtKB/TrEMBL:Q0WA51,NCBI_GP:CAL22547.1;Name=CAL22547.1;Note=Similar to Escherichia coli hypothetical protein YhiN SW:YHIN_ECOLI (P37631) (400 aa) fasta scores: E(): 0%2C78.4%25 id in 398 aa%2C and to Vibrio cholerae hypothetical protein VC0080 TR:Q9KVQ9 (EMBL:AE004099) (398 aa) fasta scores: E(): 0%2C 59.3%25 id in 388 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004099;product=conserved hypothetical protein;protein_id=CAL22547.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4466063	4466092	.	-	.	ID=id9511;Note=PS00449 ATP synthase a subunit signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00449
AL590842.1	EMBL	gene	4466766	4468262	.	+	.	ID=gene3922;Name=YPO3967;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3967
AL590842.1	EMBL	CDS	4466766	4468262	.	+	0	ID=cds3857;Parent=gene3922;Dbxref=GOA:Q0WA50,InterPro:IPR001204,UniProtKB/TrEMBL:Q0WA50,NCBI_GP:CAL22548.1;Name=CAL22548.1;Note=Similar to Escherichia coli probable low-affinity inorganic phosphate transporter 1 PitA SW:PITA_ECOLI (P37308) (499 aa) fasta scores: E(): 0%2C 75.6%25 id in 499 aa%2Cand to Escherichia coli probable low-affinity inorganic phosphate transporter 2 PitB SW:PITB_ECOLI (P43676) (499 aa) fasta scores: E(): 0%2C 70.6%25 id in 500 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=phosphate transport protein;protein_id=CAL22548.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4466793	4466861	.	+	.	ID=id9512;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4466853	4467563	.	+	.	ID=id9513;Note=Pfam match to entry PF01384 PHO4%2C Phosphate transporter family%2C score 223.20%2C E-value 9.8e-71;gbkey=misc_feature;inference=protein motif:PF01384
AL590842.1	EMBL	sequence_feature	4466919	4466987	.	+	.	ID=id9514;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4467018	4467065	.	+	.	ID=id9515;Note=PS00012 Phosphopantetheine attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00012
AL590842.1	EMBL	sequence_feature	4467045	4467113	.	+	.	ID=id9516;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4467132	4467200	.	+	.	ID=id9517;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4467228	4467296	.	+	.	ID=id9518;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4467384	4467437	.	+	.	ID=id9519;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4467465	4467533	.	+	.	ID=id9520;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4467900	4468226	.	+	.	ID=id9521;Note=Pfam match to entry PF01384 PHO4%2C Phosphate transporter family%2C score 128.70%2C E-value 1.5e-40;gbkey=misc_feature;inference=protein motif:PF01384
AL590842.1	EMBL	sequence_feature	4467903	4467971	.	+	.	ID=id9522;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4468014	4468082	.	+	.	ID=id9523;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4468182	4468250	.	+	.	ID=id9524;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	repeat_region	4468383	4469094	.	+	.	ID=id9525;Note=Contains a 'A' at nucleotide position 315%3B~IS200-like insertion sequence:IS1541;gbkey=repeat_region
AL590842.1	EMBL	gene	4468528	4468986	.	+	.	ID=gene3923;Name=tnp;gbkey=Gene;gene=tnp;gene_biotype=protein_coding;locus_tag=YPO3968
AL590842.1	EMBL	CDS	4468528	4468986	.	+	0	ID=cds3858;Parent=gene3923;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAL22549.1;Name=CAL22549.1;Note=Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa;gbkey=CDS;gene=tnp;inference=similar to sequence:INSDC:AJ238014;product=transposase for the IS1541 insertion element;protein_id=CAL22549.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4468582	4468893	.	+	.	ID=id9526;Note=Pfam match to entry PF01797 Transposase_17%2CTransposase IS200 like%2C score 230.20%2C E-value 3e-65;gbkey=misc_feature;gene=tnp;inference=protein motif:PF01797
AL590842.1	EMBL	gene	4469119	4469454	.	-	.	ID=gene3924;Name=uspB;gbkey=Gene;gene=uspB;gene_biotype=protein_coding;locus_tag=YPO3969
AL590842.1	EMBL	CDS	4469119	4469454	.	-	0	ID=cds3859;Parent=gene3924;Dbxref=GOA:Q8ZA50,InterPro:IPR019598,NCBI_GP:CAL22550.1;Name=CAL22550.1;Note=Similar to Escherichia coli universal stress protein B UspB SW:USPB_ECOLI (P37632) (111 aa) fasta scores: E(): 0%2C 87.4%25 id in 111 aa%2C and to Vibrio cholerae hypothetical protein VC0079 TR:Q9KVR0 (EMBL:AE004099) (107 aa) fasta scores: E(): 2.9e-18%2C 47.7%25 id in 109 aa;gbkey=CDS;gene=uspB;inference=similar to sequence:INSDC:AE004099;product=universal stress protein B;protein_id=CAL22550.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4469125	4469190	.	-	.	ID=id9527;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=uspB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4469383	4469439	.	-	.	ID=id9528;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=uspB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4470162	4470608	.	+	.	ID=gene3925;Name=uspA;gbkey=Gene;gene=uspA;gene_biotype=protein_coding;locus_tag=YPO3970
AL590842.1	EMBL	CDS	4470162	4470608	.	+	0	ID=cds3860;Parent=gene3925;Dbxref=GOA:Q8ZA49,InterPro:IPR006015,InterPro:IPR006016,InterPro:IPR014729,NCBI_GP:CAL22551.1;Name=CAL22551.1;Note=Similar to Escherichia coli universal stress protein A UspA SW:USPA_ECOLI (P28242) (143 aa) fasta scores: E(): 0%2C 93.0%25 id in 142 aa%2C and to Haemophilus influenzae universal stress protein A UspA SW:USPA_HAEIN (P44880) (141 aa) fasta scores: E(): 0%2C 66.4%25 id in 140 aa;gbkey=CDS;gene=uspA;product=universal stress protein A;protein_id=CAL22551.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4470264	4470572	.	+	.	ID=id9529;Note=Pfam match to entry PF00582 Usp%2C Universal stress protein family%2C score 140.80%2C E-value 2.5e-38;gbkey=misc_feature;gene=uspA;inference=protein motif:PF00582
AL590842.1	EMBL	gene	4470855	4472198	.	+	.	ID=gene3926;Name=gdhA;gbkey=Gene;gene=gdhA;gene_biotype=protein_coding;locus_tag=YPO3971
AL590842.1	EMBL	CDS	4470855	4472198	.	+	0	ID=cds3861;Parent=gene3926;Dbxref=GOA:Q0WA46,InterPro:IPR006095,InterPro:IPR006096,InterPro:IPR006097,InterPro:IPR014362,InterPro:IPR016040,UniProtKB/TrEMBL:Q0WA46,NCBI_GP:CAL22552.1;Name=CAL22552.1;Note=Similar to Escherichia coli NADP-specific glutamate dehydrogenase GdhA SW:DHE4_ECOLI (P00370) (447 aa) fasta scores: E(): 0%2C 83.9%25 id in 447 aa%2C and to Salmonella typhimurium NADP-specific glutamate dehydrogenase GdhA SW:DHE4_SALTY (P15111) (447 aa) fasta scores: E(): 0%2C 84.1%25 id in 447 aa;gbkey=CDS;gene=gdhA;product=NADP-specific glutamate dehydrogenase;protein_id=CAL22552.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4471023	4472189	.	+	.	ID=id9530;Note=Pfam match to entry PF00208 GLFV_dehydrog%2CGlutamate/Leucine/Phenylalanine/Valine dehydrogenase%2C score 721.10%2C E-value 5e-213;gbkey=misc_feature;gene=gdhA;inference=protein motif:PF00208
AL590842.1	EMBL	sequence_feature	4471218	4471259	.	+	.	ID=id9531;Note=PS00074 Glu / Leu / Phe / Val dehydrogenases active site.;gbkey=misc_feature;gene=gdhA;inference=protein motif:ProSite:PS00074
AL590842.1	EMBL	gene	4472443	4473780	.	+	.	ID=gene3927;Name=YPO3973;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3973
AL590842.1	EMBL	CDS	4472443	4473780	.	+	0	ID=cds3862;Parent=gene3927;Dbxref=GOA:Q7CG03,InterPro:IPR001818,InterPro:IPR006026,InterPro:IPR011049,InterPro:IPR013858,InterPro:IPR016294,InterPro:IPR019960,InterPro:IPR024079,UniProtKB/TrEMBL:Q7CG03,NCBI_GP:CAL22553.1;Name=CAL22553.1;Note=Similar to Erwinia carotovora subsp. carotovora metalloprotease PrtW TR:Q9RB20 (EMBL:AF141295) (473 aa) fasta scores: E(): 0%2C 46.8%25 id in 427 aa%2C and to Serratia sp zinc-dependent proteinase%2C serralysin SW:PRZN_SERSP (P07268) (486 aa) fasta scores: E(): 0%2C 42.8%25 id in 449 aa. Sequence divergence at the N-terminus;gbkey=CDS;inference=similar to sequence:INSDC:AF141295;product=metalloprotease;protein_id=CAL22553.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4472932	4472961	.	+	.	ID=id9532;Note=PS00142 Neutral zinc metallopeptidases%2C zinc-binding region signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00142
AL590842.1	EMBL	sequence_feature	4473349	4473480	.	+	.	ID=id9533;Note=Pfam match to entry PF00353 hemolysinCabind%2CHemolysin-type calcium-binding proteins%2C score 31.70%2CE-value 8e-08;gbkey=misc_feature;inference=protein motif:PF00353
AL590842.1	EMBL	gene	4473845	4474615	.	-	.	ID=gene3928;Name=YPO3974;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3974
AL590842.1	EMBL	CDS	4473845	4474615	.	-	0	ID=cds3863;Parent=gene3928;Dbxref=GOA:Q8ZA46,InterPro:IPR007536,InterPro:IPR029063,NCBI_GP:CAL22554.1;Name=CAL22554.1;Note=Similar to Escherichia coli hypothetical protein YyhiQ SW:YHIQ_ECOLI (P37633) (250 aa) fasta scores: E(): 0%2C78.2%25 id in 248 aa%2C and to Salmonella typhimurium hypothetical protein YhiQ SW:YHIQ_SALTY (Q9X6G2) (253 aa) fasta scores: E(): 0%2C 77.1%25 id in 249 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL22554.1;transl_table=11
AL590842.1	EMBL	gene	4474619	4476661	.	-	.	ID=gene3929;Name=opdA;gbkey=Gene;gene=opdA;gene_biotype=protein_coding;gene_synonym=prlC;locus_tag=YPO3975
AL590842.1	EMBL	CDS	4474619	4476661	.	-	0	ID=cds3864;Parent=gene3929;Dbxref=GOA:Q7CG05,InterPro:IPR001567,InterPro:IPR024077,InterPro:IPR024079,InterPro:IPR024080,UniProtKB/TrEMBL:Q7CG05,NCBI_GP:CAL22555.1;Name=CAL22555.1;Note=Similar to Escherichia coli oligopeptidase A OpdA SW:OPDA_ECOLI (P27298) (680 aa) fasta scores: E(): 0%2C 80.7%25 id in 680 aa%2C and to Salmonella typhimurium oligopeptidase A OpdA SW:OPDA_SALTY (P27237) (680 aa) fasta scores: E(): 0%2C 80.1%25 id in 680 aa;gbkey=CDS;gene=opdA;product=oligopeptidase A;protein_id=CAL22555.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4474628	4476508	.	-	.	ID=id9534;Note=Pfam match to entry PF01432 Peptidase_M3%2C Peptidase family M3%2C score 873.80%2C E-value 5.4e-259;gbkey=misc_feature;gene=opdA;inference=protein motif:PF01432
AL590842.1	EMBL	sequence_feature	4475237	4475266	.	-	.	ID=id9535;Note=PS00142 Neutral zinc metallopeptidases%2C zinc-binding region signature.;gbkey=misc_feature;gene=opdA;inference=protein motif:ProSite:PS00142
AL590842.1	EMBL	gene	4476990	4477832	.	+	.	ID=gene3930;Name=YPO3976;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3976
AL590842.1	EMBL	CDS	4476990	4477832	.	+	0	ID=cds3865;Parent=gene3930;Dbxref=GOA:Q7CG06,InterPro:IPR002052,InterPro:IPR007473,InterPro:IPR029063,UniProtKB/TrEMBL:Q7CG06,NCBI_GP:CAL22556.1;Name=CAL22556.1;Note=Similar to Escherichia coli hypothetical protein YhiR SW:YHIR_ECOLI (P37634) (280 aa) fasta scores: E(): 0%2C78.2%25 id in 280 aa%2C and to Haemophilus influenzae hypothetical protein HI0441 SW:YHIR_HAEIN (P31777) (281 aa) fasta scores: E(): 0%2C 65.5%25 id in 281 aa;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL22556.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4477470	4477490	.	+	.	ID=id9536;Note=PS00092 N-6 Adenine-specific DNA methylases signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00092
AL590842.1	EMBL	sequence_feature	4477710	4477730	.	+	.	ID=id9537;Note=PS00092 N-6 Adenine-specific DNA methylases signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00092
AL590842.1	EMBL	gene	4478018	4479370	.	+	.	ID=gene3931;Name=gor;gbkey=Gene;gene=gor;gene_biotype=protein_coding;locus_tag=YPO3977
AL590842.1	EMBL	CDS	4478018	4479370	.	+	0	ID=cds3866;Parent=gene3931;Dbxref=GOA:Q0WA41,InterPro:IPR001327,InterPro:IPR004099,InterPro:IPR006322,InterPro:IPR012999,InterPro:IPR013027,InterPro:IPR016156,InterPro:IPR023753,UniProtKB/TrEMBL:Q0WA41,NCBI_GP:CAL22557.1;Name=CAL22557.1;Note=Similar to Escherichia coli glutathione reductase Gor SW:GSHR_ECOLI (P06715) (450 aa) fasta scores: E(): 0%2C85.3%25 id in 450 aa%2C and to Vibrio cholerae glutathione reductase VC0186 TR:Q9KVG0 (EMBL:AE004109) (454 aa) fasta scores: E(): 0%2C 75.2%25 id in 451 aa;gbkey=CDS;gene=gor;inference=similar to sequence:INSDC:AE004109;product=glutathione reductase;protein_id=CAL22557.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4478036	4478929	.	+	.	ID=id9538;Note=Pfam match to entry PF00070 pyr_redox%2C Pyridine nucleotide-disulphide oxidoreductase%2C score 302.50%2C E-value 1.3e-88;gbkey=misc_feature;gene=gor;inference=protein motif:PF00070
AL590842.1	EMBL	sequence_feature	4478132	4478164	.	+	.	ID=id9539;Note=PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site.;gbkey=misc_feature;gene=gor;inference=protein motif:ProSite:PS00076
AL590842.1	EMBL	gene	4479562	4480689	.	+	.	ID=gene3932;Name=YPO3978;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3978
AL590842.1	EMBL	CDS	4479562	4480689	.	+	0	ID=cds3867;Parent=gene3932;Dbxref=GOA:Q7CG07,InterPro:IPR008599,InterPro:IPR009057,InterPro:IPR025736,UniProtKB/TrEMBL:Q7CG07,NCBI_GP:CAL22558.1;Name=CAL22558.1;Note=Similar to Escherichia coli carbohydrate diacid regulator CdaR SW:CDAR_ECOLI (P37047) (385 aa) fasta scores: E(): 0%2C 35.8%25 id in 380 aa%2C and to Vibrio cholerae hypothetical protein VCA0905 TR:Q9KL43 (EMBL:AE004418) (379 aa) fasta scores: E(): 0%2C 38.2%25 id in 377 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004418;product=putative regulatory protein;protein_id=CAL22558.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4480540	4480605	.	+	.	ID=id9540;Note=Predicted helix-turn-helix motif with score 1201 (+3.28 SD) at aa 327-348%2C sequence CDLSQTSKQLHIHVNTLRYRLQ;gbkey=misc_feature
AL590842.1	EMBL	gene	4480867	4482135	.	+	.	ID=gene3933;Name=YPO3979;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3979
AL590842.1	EMBL	CDS	4480867	4482135	.	+	0	ID=cds3868;Parent=gene3933;Dbxref=GOA:Q7CG08,InterPro:IPR003474,UniProtKB/TrEMBL:Q7CG08,NCBI_GP:CAL22559.1;Name=CAL22559.1;Note=Similar to Escherichia coli high-affinity gluconate transporter GntP SW:GNTP_ECOLI (P39373) (447 aa) fasta scores: E(): 1.1e-10%2C 24.1%25 id in 452 aa%2C and to Haemophilus influenzae hypothetical protein HI0092 SW:Y092_HAEIN (Q57493) (419 aa) fasta scores: E(): 0%2C 73.3%25 id in 420 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=GntP family permease;protein_id=CAL22559.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4480876	4480929	.	+	.	ID=id9541;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4480885	4482120	.	+	.	ID=id9542;Note=Pfam match to entry PF02447 GntP_permease%2C %2C score -213.60%2C E-value 1.5e-06;gbkey=misc_feature;inference=protein motif:PF02447
AL590842.1	EMBL	sequence_feature	4480948	4481013	.	+	.	ID=id9543;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4481056	4481124	.	+	.	ID=id9544;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4481161	4481229	.	+	.	ID=id9545;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4481380	4481448	.	+	.	ID=id9546;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4481515	4481574	.	+	.	ID=id9547;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4481584	4481652	.	+	.	ID=id9548;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4481689	4481757	.	+	.	ID=id9549;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4481815	4481874	.	+	.	ID=id9550;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4481893	4481961	.	+	.	ID=id9551;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4482052	4482120	.	+	.	ID=id9552;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4482146	4483282	.	+	.	ID=gene3934;Name=glxK;gbkey=Gene;gene=glxK;gene_biotype=protein_coding;locus_tag=YPO3980
AL590842.1	EMBL	CDS	4482146	4483282	.	+	0	ID=cds3869;Parent=gene3934;Dbxref=GOA:Q7CG09,InterPro:IPR004381,InterPro:IPR018193,UniProtKB/TrEMBL:Q7CG09,NCBI_GP:CAL22560.1;Name=CAL22560.1;Note=Similar to Escherichia coli glycerate kinase 1 GlxK SW:GRK1_ECOLI (P77364) (381 aa) fasta scores: E(): 0%2C 60.2%25 id in 377 aa%2C and to Haemophilus influenzae glycerate kinase GlxK SW:GRK_HAEIN (P44507) (378 aa) fasta scores: E(): 0%2C 62.6%25 id in 372 aa;gbkey=CDS;gene=glxK;product=putative glycerate kinase;protein_id=CAL22560.1;transl_table=11
AL590842.1	EMBL	gene	4483528	4484034	.	-	.	ID=gene3935;Name=YPO3981;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3981
AL590842.1	EMBL	CDS	4483528	4484034	.	-	0	ID=cds3870;Parent=gene3935;Dbxref=InterPro:IPR010351,UniProtKB/TrEMBL:Q7CG10,NCBI_GP:CAL22561.1;Name=CAL22561.1;Note=No significant database matches. Similar to YPO3982 (60.7%25 identity in 168 aa overlap);gbkey=CDS;product=putative exported protein;protein_id=CAL22561.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4483672	4483710	.	-	.	ID=id9553;Note=PS00018 EF-hand calcium-binding domain.;gbkey=misc_feature;inference=protein motif:ProSite:PS00018
AL590842.1	EMBL	gene	4484102	4484599	.	-	.	ID=gene3936;Name=YPO3982;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3982
AL590842.1	EMBL	CDS	4484102	4484599	.	-	0	ID=cds3871;Parent=gene3936;Dbxref=InterPro:IPR010351,UniProtKB/TrEMBL:Q7CG11,NCBI_GP:CAL22562.1;Name=CAL22562.1;Note=Poor database matches. Similar to Caenorhabditis elegans hypothetical protein Y48d7a.1 y48d7a.1 TR:Q9N4V1 (EMBL:AC006783) (143 aa) fasta scores: E(): 3.7%2C 27.6%25 id in 134 aa. Similar to YPO3981 (60.7%25 identity in 168 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AC006783;product=hypothetical protein;protein_id=CAL22562.1;transl_table=11
AL590842.1	EMBL	repeat_region	4484307	4484653	.	-	.	ID=id9554;Note=Repeated sequence thought to encode a possible membrane protein with no database hits. This sequence is a partial repeat of the sequences at positions :3197462..3197890%2C 4366790..4367265%2C 4367331..4367806%2C4367872..4368406 and complement(4419711..4420226);gbkey=repeat_region
AL590842.1	EMBL	gene	4484601	4485470	.	-	.	ID=gene3937;Name=YPO3983;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3983
AL590842.1	EMBL	CDS	4484601	4485470	.	-	0	ID=cds3872;Parent=gene3937;Dbxref=InterPro:IPR017483,UniProtKB/TrEMBL:Q7CG12,NCBI_GP:CAL22563.1;Name=CAL22563.1;Note=Similar to Xylella fastidiosa hypothetical protein XF0155 TR:Q9PGZ1 (EMBL:AE003869) (295 aa) fasta scores: E(): 0%2C 42.3%25 id in 274 aa%2C and to an internal region of Saccharomyces cerevisiae transcription factor tau 138 subunit TFC3 SW:TFC3_YEAST (P34111) (1160 aa) fasta scores: E(): 2.2%2C 24.8%25 id in 222 aa. C-terminal region similar to YPO3892 (51.8%25 identity in 220 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AE003869;product=conserved hypothetical protein;protein_id=CAL22563.1;transl_table=11
AL590842.1	EMBL	gene	4485558	4488770	.	-	.	ID=gene3938;Name=yapE;gbkey=Gene;gene=yapE;gene_biotype=protein_coding;locus_tag=YPO3984
AL590842.1	EMBL	CDS	4485558	4488770	.	-	0	ID=cds3873;Parent=gene3938;Dbxref=GOA:Q0WA34,InterPro:IPR004899,InterPro:IPR005546,InterPro:IPR006315,InterPro:IPR006626,InterPro:IPR011050,InterPro:IPR012332,UniProtKB/TrEMBL:Q0WA34,NCBI_GP:CAL22564.1;Name=CAL22564.1;Note=Previously sequenced as Yersinia pestis putative autotransporter protein YapE TR:CAC14224 (EMBL:AJ277628) (1072 aa) fasta scores: E(): 0%2C 100.0%25 id in 1070 aa. Similar to Escherichia coli antigen 43 protein Agn43A TR:Q9L6T8 (EMBL:AF233271) (1039 aa) fasta scores: E(): 1.9e-15%2C 24.7%25 id in 1073 aa;gbkey=CDS;gene=yapE;inference=similar to sequence:INSDC:AJ277628;product=putative autotransporter protein;protein_id=CAL22564.1;transl_table=11
AL590842.1	EMBL	gene	4489448	4490530	.	+	.	ID=gene3939;Name=YPO3985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3985
AL590842.1	EMBL	CDS	4489448	4490530	.	+	0	ID=cds3874;Parent=gene3939;Dbxref=InterPro:IPR005274,InterPro:IPR017039,UniProtKB/TrEMBL:Q7CG13,NCBI_GP:CAL22565.1;Name=CAL22565.1;Note=Similar to Erwinia chrysanthemi hypothetical protein YhjD SW:YHJD_ERWCH (P45417) (328 aa) fasta scores: E(): 0%2C76.8%25 id in 267 aa%2C and to Escherichia coli hypothetical protein YhjD SW:YHJD_ECOLI (P37642) (337 aa) fasta scores: E(): 0%2C 68.5%25 id in 314 aa. CDS contains extra residues at the C-terminus in comparison to other orthologues;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL22565.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4489661	4489729	.	+	.	ID=id9555;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4489838	4489906	.	+	.	ID=id9556;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4489994	4490062	.	+	.	ID=id9557;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4490120	4490188	.	+	.	ID=id9558;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4490222	4490290	.	+	.	ID=id9559;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4490333	4490401	.	+	.	ID=id9560;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4490555	4491331	.	+	.	ID=gene3940;Name=cdh;gbkey=Gene;gene=cdh;gene_biotype=protein_coding;locus_tag=YPO3986
AL590842.1	EMBL	CDS	4490555	4491331	.	+	0	ID=cds3875;Parent=gene3940;Dbxref=GOA:Q8ZA34,InterPro:IPR003763,InterPro:IPR011146,NCBI_GP:CAL22566.1;Name=CAL22566.1;Note=Similar to Escherichia coli CDP-diacylglycerol pyrophosphatase Cdh SW:CDH_ECOLI (P06282) (251 aa) fasta scores: E(): 0%2C 51.0%25 id in 243 aa%2C and to Salmonella typhimurium CDP-diacylglycerol pyrophosphatase Cdh SW:CDH_SALTY (P26219) (251 aa) fasta scores: E(): 0%2C 51.4%25 id in 249 aa;gbkey=CDS;gene=cdh;product=CDP-diacylglycerol pyrophosphatase;protein_id=CAL22566.1;transl_table=11
AL590842.1	EMBL	gene	4491308	4493530	.	-	.	ID=gene3941;Name=YPO3987;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3987
AL590842.1	EMBL	CDS	4491308	4493530	.	-	0	ID=cds3876;Parent=gene3941;Dbxref=InterPro:IPR007844,UniProtKB/TrEMBL:Q0WA31,NCBI_GP:CAL22567.1;Name=CAL22567.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA4879 TR:AAG08264 (EMBL:AE004901) (689 aa) fasta scores: E(): 0%2C 52.2%25 id in 713 aa%2C and to Escherichia coli hypothetical protein YhjG SW:YHJG_ECOLI (P37645) (691 aa) fasta scores: E(): 0%2C 50.4%25 id in 722 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004901;product=putative exported protein;protein_id=CAL22567.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4491398	4491466	.	-	.	ID=id9561;Note=2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4493835	4494665	.	-	.	ID=gene3942;Name=YPO3988;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3988
AL590842.1	EMBL	CDS	4493835	4494665	.	-	0	ID=cds3877;Parent=gene3942;Dbxref=InterPro:IPR001633,UniProtKB/TrEMBL:Q0WA30,NCBI_GP:CAL22568.1;Name=CAL22568.1;Note=Similar to Escherichia coli hypothetical protein YhjH SW:YHJH_ECOLI (P37646) (255 aa) fasta scores: E(): 0%2C49.4%25 id in 233 aa%2C and to C-terminal region of Rhodobacter capsulatus potential nitrogen fixation positive activator protein TR:O68072 (EMBL:AF010496) (698 aa) fasta scores: E(): 4.6e-06%2C 24.3%25 id in 267 aa. Lack of similarity at the N-terminus in comparison to the E. coli orthologue;gbkey=CDS;inference=similar to sequence:INSDC:AF010496;product=conserved hypothetical protein;protein_id=CAL22568.1;transl_table=11
AL590842.1	EMBL	gene	4494899	4495099	.	+	.	ID=gene3943;Name=YPO3989;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3989
AL590842.1	EMBL	CDS	4494899	4495099	.	+	0	ID=cds3878;Parent=gene3943;Dbxref=GOA:Q0WA29,InterPro:IPR004370,InterPro:IPR014347,InterPro:IPR018191,UniProtKB/TrEMBL:Q0WA29,NCBI_GP:CAL22569.1;Name=CAL22569.1;Note=Similar to Comamonas testosteroni 4-oxalocrotonate isomerase AphI TR:Q9RHM8 (EMBL:AB029044) (63 aa) fasta scores: E(): 0.00047%2C 41.9%25 id in 62 aa%2C and to Erwinia chrysanthemi hypothetical protein YkdK SW:YKDK_ERWCH (P45418) (73 aa) fasta scores: E(): 1.8e-19%2C 83.3%25 id in 66 aa;gbkey=CDS;inference=similar to sequence:INSDC:AB029044;product=putative tautomerase;protein_id=CAL22569.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4494947	4495060	.	+	.	ID=id9562;Note=Pfam match to entry PF01361 Tautomerase%2C Tautomerase enzyme%2C score 72.30%2C E-value 1e-17;gbkey=misc_feature;inference=protein motif:PF01361
AL590842.1	EMBL	gene	4495378	4496322	.	+	.	ID=gene3944;Name=kdgK;gbkey=Gene;gene=kdgK;gene_biotype=protein_coding;locus_tag=YPO3990
AL590842.1	EMBL	CDS	4495378	4496322	.	+	0	ID=cds3879;Parent=gene3944;Dbxref=GOA:Q7CG14,InterPro:IPR002173,InterPro:IPR011611,InterPro:IPR029056,UniProtKB/TrEMBL:Q7CG14,NCBI_GP:CAL22570.1;Name=CAL22570.1;Note=Similar to Erwinia chrysanthemi 2-dehydro-3-deoxygluconokinase KdgK SW:KDGK_ERWCH (P45416) (310 aa) fasta scores: E(): 0%2C 76.0%25 id in 312 aa%2C and to Escherichia coli 2-dehydro-3-deoxygluconokinase KdgK SW:KDGK_ECOLI (P37647) (309 aa) fasta scores: E(): 0%2C 73.6%25 id in 311 aa;gbkey=CDS;gene=kdgK;product=2-dehydro-3-deoxygluconokinase;protein_id=CAL22570.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4495459	4496196	.	+	.	ID=id9563;Note=Pfam match to entry PF00294 pfkB%2C pfkB family carbohydrate kinase%2C score 210.20%2C E-value 3.1e-59;gbkey=misc_feature;gene=kdgK;inference=protein motif:PF00294
AL590842.1	EMBL	sequence_feature	4496161	4496202	.	+	.	ID=id9564;Note=PS00584 pfkB family of carbohydrate kinases signature 2.;gbkey=misc_feature;gene=kdgK;inference=protein motif:ProSite:PS00584
AL590842.1	EMBL	gene	4496486	4497985	.	-	.	ID=gene3945;Name=YPO3991;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3991
AL590842.1	EMBL	CDS	4496486	4497985	.	-	0	ID=cds3880;Parent=gene3945;Dbxref=GOA:Q7CG15,InterPro:IPR007863,InterPro:IPR011237,InterPro:IPR011249,InterPro:IPR011765,PDB:3GO9,UniProtKB/TrEMBL:Q7CG15,NCBI_GP:CAL22571.1;Name=CAL22571.1;Note=Similar to an internal region of Pisum sativum metalloendopeptidase TR:Q40983 (EMBL:U25111) (1259 aa) fasta scores: E(): 0.00029%2C 20.4%25 id in 446 aa%2C and the full length to Escherichia coli protein YhjJ SW:YHJJ_ECOLI (P37648) (498 aa) fasta scores: E(): 0%2C 60.6%25 id in 498 aa;gbkey=CDS;inference=similar to sequence:INSDC:U25111;product=putative insulinase family protease;protein_id=CAL22571.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4497410	4497853	.	-	.	ID=id9565;Note=Pfam match to entry PF00675 Peptidase_M16%2CInsulinase (Peptidase family M16)%2C score 7.10%2C E-value 0.00037;gbkey=misc_feature;inference=protein motif:PF00675
AL590842.1	EMBL	gene	4498350	4499639	.	-	.	ID=gene3946;Name=dctA;gbkey=Gene;gene=dctA;gene_biotype=protein_coding;locus_tag=YPO3992
AL590842.1	EMBL	CDS	4498350	4499639	.	-	0	ID=cds3881;Parent=gene3946;Dbxref=GOA:Q8ZA28,InterPro:IPR001991,InterPro:IPR018107,InterPro:IPR023954,NCBI_GP:CAL22572.1;Name=CAL22572.1;Note=Similar to Salmonella typhimurium C4-dicarboxylate transport protein DctA SW:DCTA_SALTY (P50334) (428 aa) fasta scores: E(): 0%2C 85.8%25 id in 424 aa%2C and to Escherichia coli C4-dicarboxylate transport protein DctA SW:DCTA_ECOLI (P37312) (428 aa) fasta scores: E(): 0%2C 85.4%25 id in 424 aa;gbkey=CDS;gene=dctA;inference=protein motif:TMHMM:2.0;product=C4-dicarboxylate transport protein;protein_id=CAL22572.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4498437	4499615	.	-	.	ID=id9566;Note=Pfam match to entry PF00375 SDF%2CSodium:dicarboxylate symporter family%2C score 679.90%2CE-value 1.3e-200;gbkey=misc_feature;gene=dctA;inference=protein motif:PF00375
AL590842.1	EMBL	sequence_feature	4498521	4498586	.	-	.	ID=id9567;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=dctA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4498599	4498649	.	-	.	ID=id9568;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=dctA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4498686	4498757	.	-	.	ID=id9569;Note=PS00714 Sodium:dicarboxylate symporter family signature 2.;gbkey=misc_feature;gene=dctA;inference=protein motif:ProSite:PS00714
AL590842.1	EMBL	sequence_feature	4498926	4498991	.	-	.	ID=id9570;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=dctA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4499022	4499087	.	-	.	ID=id9571;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=dctA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4499151	4499216	.	-	.	ID=id9572;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=dctA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4499343	4499408	.	-	.	ID=id9573;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=dctA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4499448	4499498	.	-	.	ID=id9574;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=dctA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4499487	4499534	.	-	.	ID=id9575;Note=PS00713 Sodium:dicarboxylate symporter family signature 1.;gbkey=misc_feature;gene=dctA;inference=protein motif:ProSite:PS00713
AL590842.1	EMBL	sequence_feature	4499559	4499624	.	-	.	ID=id9576;Note=one of 8 probable transmembrane helices predicted;gbkey=misc_feature;gene=dctA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4500094	4500573	.	-	.	ID=gene3947;Name=YPO3993;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3993
AL590842.1	EMBL	CDS	4500094	4500573	.	-	0	ID=cds3882;Parent=gene3947;Dbxref=GOA:Q0WA25,InterPro:IPR000421,InterPro:IPR008979,UniProtKB/TrEMBL:Q0WA25,NCBI_GP:CAL22573.1;Name=CAL22573.1;Note=Similar to the C-terminal regions of Streptomyces coelicolor putative secreted protein SCF11.25 TR:Q9RK65 (EMBL:AL132662) (848 aa) fasta scores: E(): 0.0027%2C 29.2%25 id in 106 aa%2C and Streptomyces coelicolor putative secreted protein SC4G1.03 TR:CAC01535 (EMBL:AL391039) (1131 aa) fasta scores: E(): 0.12%2C 27.8%25 id in 144 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL391039;product=putative exported protein;protein_id=CAL22573.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4500181	4500513	.	-	.	ID=id9577;Note=Pfam match to entry PF00754 F5_F8_type_C%2C F5/8 type C domain%2C score -42.20%2C E-value 0.33;gbkey=misc_feature;inference=protein motif:PF00754
AL590842.1	EMBL	sequence_feature	4500283	4500306	.	-	.	ID=id9578;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4500698	4502416	.	-	.	ID=gene3948;Name=pelY;gbkey=Gene;gene=pelY;gene_biotype=protein_coding;locus_tag=YPO3994
AL590842.1	EMBL	CDS	4500698	4502416	.	-	0	ID=cds3883;Parent=gene3948;Dbxref=GOA:Q7CG16,InterPro:IPR010702,UniProtKB/TrEMBL:Q7CG16,NCBI_GP:CAL22574.1;Name=CAL22574.1;Note=Similar to Yersinia pseudotuberculosis periplasmic pectate lyase precursor PelY SW:PELP_YERPS (P11278) (541 aa) fasta scores: E(): 0%2C 100.0%25 id in 538 aa%2C and to Erwinia carotovora periplasmic pectate lyase precursor PelB SW:PELP_ERWCA (P14005) (568 aa) fasta scores: E(): 0%2C 79.6%25 id in 565 aa. This CDS is 38.6%25 identical to YPO1723 (PelW);gbkey=CDS;gene=pelY;product=periplasmic pectate lyase precursor;protein_id=CAL22574.1;transl_table=11
AL590842.1	EMBL	gene	4502662	4503366	.	-	.	ID=gene3949;Name=YPO3995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO3995
AL590842.1	EMBL	CDS	4502662	4503366	.	-	0	ID=cds3884;Parent=gene3949;Dbxref=InterPro:IPR009331,InterPro:IPR017690,UniProtKB/TrEMBL:Q7CG17,NCBI_GP:CAL22575.1;Name=CAL22575.1;Note=Similar to Vibrio halioticoli alginate lyase AlyVGIII TR:Q9RGQ2 (EMBL:AF114040) (235 aa) fasta scores: E(): 1.1e-12%2C 28.1%25 id in 235 aa. N-terminal region is similar to Salmonella typhimurium hypothetical protein YiiY SW:YIIY_SALTY (P43022) (134 aa) fasta scores: E(): 4.6e-11%2C38.2%25 id in 123 aa. Similar to YPO1718 (63.7%25 identity in 212 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AF114040;product=putative exported protein;protein_id=CAL22575.1;transl_table=11
AL590842.1	EMBL	gene	4504006	4506021	.	-	.	ID=gene3950;Name=yhjK;gbkey=Gene;gene=yhjK;gene_biotype=protein_coding;locus_tag=YPO3996
AL590842.1	EMBL	CDS	4504006	4506021	.	-	0	ID=cds3885;Parent=gene3950;Dbxref=GOA:Q74QU7,InterPro:IPR000160,InterPro:IPR001633,InterPro:IPR003660,InterPro:IPR029787,UniProtKB/TrEMBL:Q74QU7,NCBI_GP:CAL22576.1;Name=CAL22576.1;Note=Similar to Escherichia coli protein YhjK SW:YHJK_ECOLI (P37649) (651 aa) fasta scores: E(): 0%2C 47.9%25 id in 653 aa. C-terminus is similar to the C-terminal region of Pseudomonas aeruginosa hypothetical protein PA4367 TR:AAG07755 (EMBL:AE004852) (687 aa) fasta scores: E(): 0%2C 29.6%25 id in 686 aa;gbkey=CDS;gene=yhjK;inference=similar to sequence:INSDC:AE004852;product=putative membrane protein;protein_id=CAL22576.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4504048	4504785	.	-	.	ID=id9579;Note=Pfam match to entry PF00563 DUF2%2C Domain of unknown function 2%2C score 288.60%2C E-value 7.8e-83;gbkey=misc_feature;gene=yhjK;inference=protein motif:PF00563
AL590842.1	EMBL	sequence_feature	4504825	4505340	.	-	.	ID=id9580;Note=Pfam match to entry PF00990 DUF9%2C Domain of unknown function DUF9%2C score 52.50%2C E-value 9.5e-12;gbkey=misc_feature;gene=yhjK;inference=protein motif:PF00990
AL590842.1	EMBL	sequence_feature	4505320	4505541	.	-	.	ID=id9581;Note=Pfam match to entry PF00672 DUF5%2C HAMP domain%2C score 37.50%2C E-value 3e-07;gbkey=misc_feature;gene=yhjK;inference=protein motif:PF00672
AL590842.1	EMBL	sequence_feature	4505497	4505562	.	-	.	ID=id9582;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhjK;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4505917	4505982	.	-	.	ID=id9583;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhjK;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	pseudogene	4506338	4507449	.	-	.	ID=gene3951;Name=YPO3998;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO3998;pseudo=true
AL590842.1	EMBL	CDS	4506338	4507449	.	-	0	ID=cds3886;Parent=gene3951;Note=Similar to Escherichia coli endoglucanase BcsC SW:GUN_ECOLI (P37651) (368 aa) fasta scores: E(): 0%2C 53.5%25 id in 370 aa%2C and to Erwinia rhapontici endoglucanase CelA TR:Q9L3G9 (EMBL:AJ276358) (333 aa) fasta scores: E(): 1e-17%2C 28.7%25 id in 362 aa. Contains a frameshift after codon 63. Frame shift occurs at a poly T heptamer. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=similar to sequence:INSDC:AJ276358;product=endoglucanase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	4506392	4507090	.	-	.	ID=id9584;Note=Pfam match to entry PF01270 Glyco_hydro_8%2C Glycosyl hydrolases family 8%2C score -68.20%2C E-value 1.9e-06;gbkey=misc_feature;inference=protein motif:PF01270
AL590842.1	EMBL	gene	4507553	4508560	.	-	.	ID=gene3952;Name=dppE;gbkey=Gene;gene=dppE;gene_biotype=protein_coding;gene_synonym=dppF;locus_tag=YPO3999
AL590842.1	EMBL	CDS	4507553	4508560	.	-	0	ID=cds3887;Parent=gene3952;Dbxref=GOA:Q0WA21,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR010066,InterPro:IPR013563,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0WA21,NCBI_GP:CAL22578.1;Name=CAL22578.1;Note=Similar to Escherichia coli dipeptide transport ATP-binding protein DppF SW:DPPF_ECOLI (P37313) (334 aa) fasta scores: E(): 0%2C 89.5%25 id in 324 aa%2C and to Haemophilus influenzae dipeptide transport ATP-binding protein DppF SW:DPPF_HAEIN (P45094) (327 aa) fasta scores: E(): 0%2C 77.7%25 id in 318 aa;gbkey=CDS;gene=dppE;product=dipeptide transport ATP-binding protein;protein_id=CAL22578.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4507853	4508425	.	-	.	ID=id9585;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 209.70%2C E-value 4.5e-59;gbkey=misc_feature;gene=dppE;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	4508039	4508083	.	-	.	ID=id9586;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=dppE;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	4508381	4508404	.	-	.	ID=id9587;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=dppE;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4508626	4509606	.	-	.	ID=gene3953;Name=dppD;gbkey=Gene;gene=dppD;gene_biotype=protein_coding;locus_tag=YPO4000
AL590842.1	EMBL	CDS	4508626	4509606	.	-	0	ID=cds3888;Parent=gene3953;Dbxref=GOA:Q74QU5,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR010066,InterPro:IPR013563,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q74QU5,NCBI_GP:CAL22579.1;Name=CAL22579.1;Note=Similar to Escherichia coli dipeptide transport ATP-binding protein DppD SW:DPPD_ECOLI (P37314) (327 aa) fasta scores: E(): 0%2C 87.8%25 id in 327 aa%2C and to Pasteurella multocida dipeptide transport ATP-binding protein DppD TR:AAK02323 (EMBL:AE006058) (332 aa) fasta scores: E(): 0%2C 78.8%25 id in 325 aa;gbkey=CDS;gene=dppD;inference=similar to sequence:INSDC:AE006058;product=dipeptide transport ATP-binding protein;protein_id=CAL22579.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4508917	4509504	.	-	.	ID=id9588;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 192.00%2C E-value 9.1e-54;gbkey=misc_feature;gene=dppD;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	4509103	4509147	.	-	.	ID=id9589;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=dppD;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	4509466	4509489	.	-	.	ID=id9590;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=dppD;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4509620	4510522	.	-	.	ID=gene3954;Name=dppC;gbkey=Gene;gene=dppC;gene_biotype=protein_coding;locus_tag=YPO4001
AL590842.1	EMBL	CDS	4509620	4510522	.	-	0	ID=cds3889;Parent=gene3954;Dbxref=GOA:Q7CG18,InterPro:IPR000515,InterPro:IPR025966,UniProtKB/TrEMBL:Q7CG18,NCBI_GP:CAL22580.1;Name=CAL22580.1;Note=Similar to Escherichia coli dipeptide transport system permease protein DppC SW:DPPC_ECOLI (P37315) (300 aa) fasta scores: E(): 0%2C 88.0%25 id in 300 aa%2C and to Pseudomonas aeruginosa probable permease of ABC transporter PA4504 TR:AAG07892 (EMBL:AE004864) (303 aa) fasta scores: E(): 0%2C 63.6%25 id in 283 aa;gbkey=CDS;gene=dppC;inference=similar to sequence:INSDC:AE004864;product=dipeptide transport system permease protein;protein_id=CAL22580.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4509662	4509727	.	-	.	ID=id9591;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=dppC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4509743	4509973	.	-	.	ID=id9592;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 32.70%2C E-value 8.7e-06;gbkey=misc_feature;gene=dppC;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	4509827	4509892	.	-	.	ID=id9593;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=dppC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4510037	4510102	.	-	.	ID=id9594;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=dppC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4510148	4510213	.	-	.	ID=id9595;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=dppC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4510364	4510429	.	-	.	ID=id9596;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=dppC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4510604	4511551	.	-	.	ID=gene3955;Name=dppB;gbkey=Gene;gene=dppB;gene_biotype=protein_coding;locus_tag=YPO4002
AL590842.1	EMBL	CDS	4510604	4511551	.	-	0	ID=cds3890;Parent=gene3955;Dbxref=GOA:Q7CG19,InterPro:IPR000515,UniProtKB/TrEMBL:Q7CG19,NCBI_GP:CAL22581.1;Name=CAL22581.1;Note=Similar to Escherichia coli dipeptide transport system permease protein DppB SW:DPPB_ECOLI (P37316) (339 aa) fasta scores: E(): 0%2C 87.7%25 id in 309 aa%2C and to Pseudomonas aeruginosa probable permease of ABC transporter PA4503 TR:AAG07891 (EMBL:AE004864) (336 aa) fasta scores: E(): 0%2C 65.0%25 id in 309 aa;gbkey=CDS;gene=dppB;inference=similar to sequence:INSDC:AE004864;product=dipeptide transport system permease protein;protein_id=CAL22581.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4510655	4510870	.	-	.	ID=id9597;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 35.20%2C E-value 1.5e-06;gbkey=misc_feature;gene=dppB;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	4510712	4510777	.	-	.	ID=id9598;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=dppB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4510781	4510867	.	-	.	ID=id9599;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;gene=dppB;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	4510889	4510945	.	-	.	ID=id9600;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=dppB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4511084	4511149	.	-	.	ID=id9601;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=dppB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4511189	4511254	.	-	.	ID=id9602;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=dppB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4511459	4511524	.	-	.	ID=id9603;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=dppB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4511834	4513441	.	-	.	ID=gene3956;Name=dppA;gbkey=Gene;gene=dppA;gene_biotype=protein_coding;locus_tag=YPO4003
AL590842.1	EMBL	CDS	4511834	4513441	.	-	0	ID=cds3891;Parent=gene3956;Dbxref=GOA:Q7CG20,InterPro:IPR000914,InterPro:IPR023765,UniProtKB/TrEMBL:Q7CG20,NCBI_GP:CAL22582.1;Name=CAL22582.1;Note=Similar to Escherichia coli periplasmic dipeptide transport protein precursor DppA SW:DPPA_ECOLI (P23847) (535 aa) fasta scores: E(): 0%2C 84.9%25 id in 535 aa%2C and to Pseudomonas aeruginosa probable binding protein component of ABC transporter PA4496 TR:AAG07884 (EMBL:AE004863) (537 aa) fasta scores: E(): 0%2C 52.2%25 id in 538 aa;gbkey=CDS;gene=dppA;inference=similar to sequence:INSDC:AE004863;product=periplasmic dipeptide transport protein;protein_id=CAL22582.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4511840	4513441	.	-	.	ID=id9604;Note=Pfam match to entry PF00496 SBP_bac_5%2C Bacterial extracellular solute-binding proteins%2C family 5%2C score 842.80%2C E-value 1.1e-249;gbkey=misc_feature;gene=dppA;inference=protein motif:PF00496
AL590842.1	EMBL	sequence_feature	4513139	4513207	.	-	.	ID=id9605;Note=PS01040 Bacterial extracellular solute-binding proteins%2C family 5 signature.;gbkey=misc_feature;gene=dppA;inference=protein motif:ProSite:PS01040
AL590842.1	EMBL	gene	4513844	4514092	.	-	.	ID=gene3957;Name=YPO4004;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4004
AL590842.1	EMBL	CDS	4513844	4514092	.	-	0	ID=cds3892;Parent=gene3957;Dbxref=UniProtKB/TrEMBL:Q74QU1,NCBI_GP:CAL22583.1;Name=CAL22583.1;Note=doubtful CDS with no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22583.1;transl_table=11
AL590842.1	EMBL	gene	4514110	4515873	.	-	.	ID=gene3958;Name=YPO4005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4005
AL590842.1	EMBL	CDS	4514110	4515873	.	-	0	ID=cds3893;Parent=gene3958;Dbxref=GOA:Q74QU0,InterPro:IPR005565,InterPro:IPR013686,InterPro:IPR027282,UniProtKB/TrEMBL:Q74QU0,NCBI_GP:CAL22584.1;Name=CAL22584.1;Note=Similar to Serratia marcescens hemolysin activator protein precursor ShlB SW:HLYB_SERMA (P15321) (557 aa) fasta scores: E(): 3.8e-15%2C 25.2%25 id in 472 aa%2C and to Neisseria meningitidis hemolysin activator-related protein NMB0496 TR:Q9K0S8 (EMBL:AE002406) (559 aa) fasta scores: E(): 0%2C 33.1%25 id in 556 aa. Lack of similarity at the N-terminus%2C possible alternative translational start sites;gbkey=CDS;inference=similar to sequence:INSDC:AE002406;product=putative hemolysin activator protein;protein_id=CAL22584.1;transl_table=11
AL590842.1	EMBL	gene	4515982	4517373	.	-	.	ID=gene3959;Name=YPO4006;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4006
AL590842.1	EMBL	CDS	4515982	4517373	.	-	0	ID=cds3894;Parent=gene3959;Dbxref=InterPro:IPR008638,InterPro:IPR010069,InterPro:IPR011050,InterPro:IPR012334,UniProtKB/TrEMBL:Q7CG21,NCBI_GP:CAL22585.1;Name=CAL22585.1;Note=Similar to N-terminal regions of Alcaligenes bronchisepticus adhesin FhaB TR:Q9JP78 (EMBL:AF111796) (3634 aa) fasta scores: E(): 4.7e-14%2C 25.2%25 id in 412 aa%2Cand Neisseria meningitidis hemagglutinin/hemolysin-related protein NMB1768 TR:Q9JY30 (EMBL:AE002526) (2514 aa) fasta scores: E(): 3.6e-20%2C 31.4%25 id in 449 aa. Possible gene remnant.;gbkey=CDS;inference=similar to sequence:INSDC:AF111796;product=putative exported protein;protein_id=CAL22585.1;transl_table=11
AL590842.1	EMBL	tRNA	4517686	4517762	.	-	.	ID=rna105;Note=tRNA Pro anticodon TGG%2C Cove score 92.73;gbkey=tRNA;product=tRNA-Pro
AL590842.1	EMBL	exon	4517686	4517762	.	-	.	ID=id9606;Parent=rna105;Note=tRNA Pro anticodon TGG%2C Cove score 92.73;gbkey=tRNA;product=tRNA-Pro
AL590842.1	EMBL	gene	4517879	4519210	.	-	.	ID=gene3960;Name=uhpC;gbkey=Gene;gene=uhpC;gene_biotype=protein_coding;locus_tag=YPO4007
AL590842.1	EMBL	CDS	4517879	4519210	.	-	0	ID=cds3895;Parent=gene3960;Dbxref=GOA:Q0WA13,InterPro:IPR000849,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q0WA13,NCBI_GP:CAL22586.1;Name=CAL22586.1;Note=Similar to Escherichia coli regulatory protein UhpC SW:UHPC_ECOLI (P09836) (439 aa) fasta scores: E(): 0%2C 65.4%25 id in 437 aa%2C and to Salmonella typhimurium regulatory protein UhpC SW:UHPC_SALTY (P27669) (442 aa) fasta scores: E(): 0%2C 64.8%25 id in 437 aa;gbkey=CDS;gene=uhpC;inference=protein motif:TMHMM:2.0;product=putative regulatory protein;protein_id=CAL22586.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4517912	4517977	.	-	.	ID=id9607;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=uhpC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4518008	4518073	.	-	.	ID=id9608;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=uhpC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4518113	4518178	.	-	.	ID=id9609;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=uhpC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4518194	4518250	.	-	.	ID=id9610;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=uhpC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4518290	4518355	.	-	.	ID=id9611;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=uhpC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4518401	4518457	.	-	.	ID=id9612;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=uhpC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4518602	4518667	.	-	.	ID=id9613;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=uhpC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4518830	4518922	.	-	.	ID=id9614;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=uhpC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4518944	4519009	.	-	.	ID=id9615;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=uhpC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4519040	4519105	.	-	.	ID=id9616;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;gene=uhpC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	pseudogene	4521993	4522793	.	-	.	ID=gene3961;Name=uhpB;gbkey=Gene;gene=uhpB;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO4008;part=1/2;pseudo=true
AL590842.1	EMBL	pseudogene	4519305	4520042	.	-	.	ID=gene3961;Name=uhpB;gbkey=Gene;gene=uhpB;gene_biotype=pseudogene;is_ordered=true;locus_tag=YPO4008;part=2/2;pseudo=true
AL590842.1	EMBL	CDS	4521993	4522793	.	-	0	ID=cds3896;Parent=gene3961;Note=Probable sensor kinase protein of a two-component system. Similar to Escherichia coli sensor protein UhpB SW:UHPB_ECOLI (P09835) (500 aa) fasta scores: E(): 0%2C 45.2%25 id in 504 aa%2C and to Salmonella typhimurium sensor protein UhpB SW:UHPB_SALTY (P27668) (500 aa) fasta scores: E(): 0%2C45.6%25 id in 502 aa. CDS is disrupted by the insertion of an IS100 element at codon 266;gbkey=CDS;gene=uhpB;product=two-component system%2C sensor kinase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	CDS	4519305	4520042	.	-	0	ID=cds3896;Parent=gene3961;Note=Probable sensor kinase protein of a two-component system. Similar to Escherichia coli sensor protein UhpB SW:UHPB_ECOLI (P09835) (500 aa) fasta scores: E(): 0%2C 45.2%25 id in 504 aa%2C and to Salmonella typhimurium sensor protein UhpB SW:UHPB_SALTY (P27668) (500 aa) fasta scores: E(): 0%2C45.6%25 id in 502 aa. CDS is disrupted by the insertion of an IS100 element at codon 266;gbkey=CDS;gene=uhpB;product=two-component system%2C sensor kinase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	repeat_region	4520044	4521997	.	-	.	ID=id9617;Note=insertion sequence:IS100;gbkey=repeat_region
AL590842.1	EMBL	INVERTED	4520044	4520071	.	+	.	ID=id9618;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	4520110	4520892	.	-	.	ID=gene3962;Name=ypmt1.57c;gbkey=Gene;gene=ypmt1.57c;gene_biotype=protein_coding;locus_tag=YPO4009
AL590842.1	EMBL	CDS	4520110	4520892	.	-	0	ID=cds3897;Parent=gene3962;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAL22588.1;Name=CAL22588.1;Note=Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa.;gbkey=CDS;gene=ypmt1.57c;inference=similar to sequence:INSDC:AL117211;product=insertion sequence IS100%2C ATP-binding protein;protein_id=CAL22588.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4520185	4520724	.	-	.	ID=id9619;Note=Pfam match to entry PF01695 IstB%2C IstB-like ATP binding protein%2C score 367.20%2C E-value 1.7e-106;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:PF01695
AL590842.1	EMBL	sequence_feature	4520542	4520565	.	-	.	ID=id9620;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=ypmt1.57c;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4520889	4521911	.	-	.	ID=gene3963;Name=y1093;gbkey=Gene;gene=y1093;gene_biotype=protein_coding;gene_synonym=ypmt1;locus_tag=YPO4010
AL590842.1	EMBL	CDS	4520889	4521911	.	-	0	ID=cds3898;Parent=gene3963;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAL22589.1;Name=CAL22589.1;Note=Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa;gbkey=CDS;gene=y1093;inference=similar to sequence:INSDC:U59875;product=transposase for insertion sequence IS100;protein_id=CAL22589.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4521033	4521566	.	-	.	ID=id9621;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 81.90%2C E-value 1.6e-22;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00665
AL590842.1	EMBL	sequence_feature	4521795	4521860	.	-	.	ID=id9622;Note=Predicted helix-turn-helix motif with score 2147 (+6.50 SD) at aa 18-39%2C sequence MSSRAIARELGISRNTVKRYLQ;gbkey=misc_feature;gene=y1093
AL590842.1	EMBL	sequence_feature	4521804	4521887	.	-	.	ID=id9623;Note=Pfam match to entry PF00239 recombinase%2CSite-specific recombinases%2C score 25.70%2C E-value 4.7e-06;gbkey=misc_feature;gene=y1093;inference=protein motif:PF00239
AL590842.1	EMBL	INVERTED	4521970	4521997	.	-	.	ID=id9624;Note=IS100 inverted repeat;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	4522098	4522154	.	-	.	ID=gene3964;Name=YPO4011;gbkey=Gene;gene_biotype=other;locus_tag=YPO4011
AL590842.1	EMBL	sequence_feature	4522098	4522154	.	-	.	ID=id9625;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4522176	4522226	.	-	.	ID=id9626;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4522299	4522364	.	-	.	ID=id9627;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4522386	4522451	.	-	.	ID=id9628;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4522485	4522550	.	-	.	ID=id9629;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4522578	4522628	.	-	.	ID=id9630;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4522713	4522778	.	-	.	ID=id9631;Note=one of 7 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4522176	4522226	.	-	.	ID=gene3965;Name=YPO4011;gbkey=Gene;gene_biotype=other;locus_tag=YPO4011
AL590842.1	EMBL	gene	4522299	4522364	.	-	.	ID=gene3966;Name=YPO4011;gbkey=Gene;gene_biotype=other;locus_tag=YPO4011
AL590842.1	EMBL	gene	4522386	4522451	.	-	.	ID=gene3967;Name=YPO4011;gbkey=Gene;gene_biotype=other;locus_tag=YPO4011
AL590842.1	EMBL	gene	4522485	4522550	.	-	.	ID=gene3968;Name=YPO4011;gbkey=Gene;gene_biotype=other;locus_tag=YPO4011
AL590842.1	EMBL	gene	4522578	4522628	.	-	.	ID=gene3969;Name=YPO4011;gbkey=Gene;gene_biotype=other;locus_tag=YPO4011
AL590842.1	EMBL	gene	4522713	4522778	.	-	.	ID=gene3970;Name=YPO4011;gbkey=Gene;gene_biotype=other;locus_tag=YPO4011
AL590842.1	EMBL	gene	4522790	4523380	.	-	.	ID=gene3971;Name=uhpA;gbkey=Gene;gene=uhpA;gene_biotype=protein_coding;locus_tag=YPO4012
AL590842.1	EMBL	CDS	4522790	4523380	.	-	0	ID=cds3899;Parent=gene3971;Dbxref=GOA:Q0WA10,InterPro:IPR000792,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:Q0WA10,NCBI_GP:CAL22590.1;Name=CAL22590.1;Note=Similar to Escherichia coli transcriptional regulatory protein UhpA SW:UHPA_ECOLI (P10940) (196 aa) fasta scores: E(): 0%2C 66.5%25 id in 191 aa%2C and to Salmonella typhimurium transcriptional regulatory protein UhpA SW:UHPA_SALTY (P27667) (196 aa) fasta scores: E(): 0%2C 66.0%25 id in 191 aa. Probable response regulator protein of a two-component system;gbkey=CDS;gene=uhpA;product=two-component system response regulator;protein_id=CAL22590.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4522793	4522975	.	-	.	ID=id9632;Note=Pfam match to entry PF00196 GerE%2C Bacterial regulatory proteins%2C luxR family%2C score 72.80%2C E-value 7.1e-18;gbkey=misc_feature;gene=uhpA;inference=protein motif:PF00196
AL590842.1	EMBL	sequence_feature	4522841	4522924	.	-	.	ID=id9633;Note=PS00622 Bacterial regulatory proteins%2C luxR family signature.;gbkey=misc_feature;gene=uhpA;inference=protein motif:ProSite:PS00622
AL590842.1	EMBL	sequence_feature	4522856	4522921	.	-	.	ID=id9634;Note=Predicted helix-turn-helix motif with score 1362 (+3.83 SD) at aa 178-199%2C sequence MEVREIAESLGLSPKTVHVHRA;gbkey=misc_feature;gene=uhpA
AL590842.1	EMBL	sequence_feature	4523042	4523374	.	-	.	ID=id9635;Note=Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C score 122.20%2C E-value 9.6e-33;gbkey=misc_feature;gene=uhpA;inference=protein motif:PF00072
AL590842.1	EMBL	gene	4523496	4525187	.	-	.	ID=gene3972;Name=yhjW;gbkey=Gene;gene=yhjW;gene_biotype=protein_coding;locus_tag=YPO4013
AL590842.1	EMBL	CDS	4523496	4525187	.	-	0	ID=cds3900;Parent=gene3972;Dbxref=GOA:Q7CFS1,InterPro:IPR000917,InterPro:IPR012549,InterPro:IPR017849,InterPro:IPR017850,UniProtKB/TrEMBL:Q7CFS1,NCBI_GP:CAL22591.1;Name=CAL22591.1;Note=Similar to Escherichia coli membrane-protein YhjW SW:YHJW_ECOLI (P37661) (574 aa) fasta scores: E(): 0%2C 63.4%25 id in 555 aa%2C and to Pseudomonas aeruginosa hypothetical protein PAa3310 TR:AAG06698 (EMBL:AE004753) (551 aa) fasta scores: E(): 1.5e-27%2C 27.6%25 id in 572 aa;gbkey=CDS;gene=yhjW;inference=similar to sequence:INSDC:AE004753;product=putative membrane protein;protein_id=CAL22591.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4523520	4525178	.	-	.	ID=id9636;Note=Pfam match to entry PF02418 DUF146%2C %2C score 623.40%2CE-value 1.3e-183;gbkey=misc_feature;gene=yhjW;inference=protein motif:PF02418
AL590842.1	EMBL	sequence_feature	4524654	4524704	.	-	.	ID=id9637;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhjW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4524768	4524833	.	-	.	ID=id9638;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhjW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4524879	4524944	.	-	.	ID=id9639;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhjW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4524984	4525049	.	-	.	ID=id9640;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhjW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4525095	4525151	.	-	.	ID=id9641;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yhjW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4525716	4527179	.	-	.	ID=gene3973;Name=YPO4014;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4014
AL590842.1	EMBL	CDS	4525716	4527179	.	-	0	ID=cds3901;Parent=gene3973;Dbxref=InterPro:IPR029058,UniProtKB/TrEMBL:Q7CFS0,NCBI_GP:CAL22592.1;Name=CAL22592.1;Note=No significant database matches to the full length CDS. Internal region of the CDS is similar to Streptomyces coelicolor putative esterase/lipase SC6E10.17 TR:Q9S2M1 (EMBL:AL109661) (267 aa) fasta scores: E(): 0.00068%2C 29.4%25 id in 163 aa. N-terminal region similar to N-terminus of Arabidopsis thaliana lysophospholipase-like protein T22P22_40 TR:Q9LYG5 (EMBL:AL163814) (390 aa) fasta scores: E(): 1.4%2C 22.3%25 id in 354 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL163814;product=putative membrane protein;protein_id=CAL22592.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4527090	4527140	.	-	.	ID=id9642;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4527647	4529050	.	-	.	ID=gene3974;Name=YPO4015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4015
AL590842.1	EMBL	CDS	4527647	4529050	.	-	0	ID=cds3902;Parent=gene3974;Dbxref=GOA:Q0WA07,InterPro:IPR002293,InterPro:IPR004840,InterPro:IPR004841,UniProtKB/TrEMBL:Q0WA07,NCBI_GP:CAL22593.1;Name=CAL22593.1;Note=Similar to Salmonella typhimurium proline-specific permease ProY SW:PROY_SALTY (P37460) (456 aa) fasta scores: E(): 0%2C 61.9%25 id in 446 aa%2C and to Pseudomonas putida inducible histidine transporter HutT TR:O31199 (EMBL:AF032970) (467 aa) fasta scores: E(): 0%2C 74.4%25 id in 445 aa. Similar to YPO3201 (61.5%25 identity in 442 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AF032970;product=amino acid permease;protein_id=CAL22593.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4527704	4529029	.	-	.	ID=id9643;Note=Pfam match to entry PF00324 aa_permeases%2C Amino acid permease%2C score 545.50%2C E-value 3.6e-160;gbkey=misc_feature;inference=protein motif:PF00324
AL590842.1	EMBL	sequence_feature	4527707	4527772	.	-	.	ID=id9644;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4527788	4527853	.	-	.	ID=id9645;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4527914	4527979	.	-	.	ID=id9646;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4527992	4528057	.	-	.	ID=id9647;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4528148	4528213	.	-	.	ID=id9648;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4528259	4528324	.	-	.	ID=id9649;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4528388	4528453	.	-	.	ID=id9650;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4528523	4528588	.	-	.	ID=id9651;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4528610	4528675	.	-	.	ID=id9652;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4528736	4528801	.	-	.	ID=id9653;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4528838	4528930	.	-	.	ID=id9654;Note=PS00218 Amino acid permeases signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00218
AL590842.1	EMBL	sequence_feature	4528865	4528930	.	-	.	ID=id9655;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4528946	4529002	.	-	.	ID=id9656;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4529468	4531000	.	-	.	ID=gene3975;Name=hutH;gbkey=Gene;gene=hutH;gene_biotype=protein_coding;locus_tag=YPO4016
AL590842.1	EMBL	CDS	4529468	4531000	.	-	0	ID=cds3903;Parent=gene3975;Dbxref=GOA:Q8ZA10,InterPro:IPR001106,InterPro:IPR005921,InterPro:IPR008948,InterPro:IPR022313,InterPro:IPR024083,NCBI_GP:CAL22594.1;Name=CAL22594.1;Note=Similar to Pseudomonas putida histidine ammonia-lyase HutH SW:HUTH_PSEPU (P21310) (509 aa) fasta scores: E(): 0%2C 78.3%25 id in 507 aa%2C and to Pseudomonas aeruginosa histidine ammonia-lyase HutH TR:AAG08483 (EMBL:AE004922) (509 aa) fasta scores: E(): 0%2C 78.0%25 id in 508 aa;gbkey=CDS;gene=hutH;inference=similar to sequence:INSDC:AE004922;product=histidine ammonia-lyase;protein_id=CAL22594.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4529492	4530997	.	-	.	ID=id9657;Note=Pfam match to entry PF00221 PAL%2C Phenylalanine and histidine ammonia-lyases%2C score 881.10%2C E-value 1.6e-273;gbkey=misc_feature;gene=hutH;inference=protein motif:PF00221
AL590842.1	EMBL	sequence_feature	4530485	4530526	.	-	.	ID=id9658;Note=PS00213 Lipocalin signature.;gbkey=misc_feature;gene=hutH;inference=protein motif:ProSite:PS00213
AL590842.1	EMBL	sequence_feature	4530539	4530586	.	-	.	ID=id9659;Note=PS00488 Phenylalanine and histidine ammonia-lyases signature.;gbkey=misc_feature;gene=hutH;inference=protein motif:ProSite:PS00488
AL590842.1	EMBL	gene	4530997	4532688	.	-	.	ID=gene3976;Name=hutU;gbkey=Gene;gene=hutU;gene_biotype=protein_coding;locus_tag=YPO4017
AL590842.1	EMBL	CDS	4530997	4532688	.	-	0	ID=cds3904;Parent=gene3976;Dbxref=GOA:Q8ZA09,InterPro:IPR023636,InterPro:IPR023637,NCBI_GP:CAL22595.1;Name=CAL22595.1;Note=Similar to Pseudomonas putida urocanate hydratase HutU SW:HUTU_PSEPU (P25080) (556 aa) fasta scores: E(): 0%2C87.2%25 id in 554 aa%2C and to Pseudomonas aeruginosa urocanase HutU or pa5100 TR:AAG08485 (EMBL:AE004923) (559 aa) fasta scores: E(): 0%2C 87.6%25 id in 557 aa;gbkey=CDS;gene=hutU;inference=similar to sequence:INSDC:AE004923;product=urocanate hydratase;protein_id=CAL22595.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4531021	4532685	.	-	.	ID=id9660;Note=Pfam match to entry PF01175 Urocanase%2C Urocanase%2Cscore 1377.00%2C E-value 0;gbkey=misc_feature;gene=hutU;inference=protein motif:PF01175
AL590842.1	EMBL	sequence_feature	4531453	4531482	.	-	.	ID=id9661;Note=PS01233 Urocanase active site.;gbkey=misc_feature;gene=hutU;inference=protein motif:ProSite:PS01233
AL590842.1	EMBL	sequence_feature	4532113	4532145	.	-	.	ID=id9662;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=hutU;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	4533415	4534359	.	+	.	ID=gene3977;Name=cysM;gbkey=Gene;gene=cysM;gene_biotype=protein_coding;locus_tag=YPO4018
AL590842.1	EMBL	CDS	4533415	4534359	.	+	0	ID=cds3905;Parent=gene3977;Dbxref=InterPro:IPR001926,UniProtKB/TrEMBL:Q0WA04,NCBI_GP:CAL22596.1;Name=CAL22596.1;Note=Similar to Streptococcus suis O-acetylserine lyase CysM TR:Q9RHP9 (EMBL:AB028865) (308 aa) fasta scores: E(): 1e-23%2C 30.8%25 id in 302 aa%2C and to Methanosarcina barkeri O-acetylserine (thiol)-lyase-A related protein CysK TR:Q9UWP0 (EMBL:AF174138) (308 aa) fasta scores: E(): 3.7e-26%2C 33.6%25 id in 301 aa;gbkey=CDS;gene=cysM;inference=similar to sequence:INSDC:AF174138;product=pyridoxal-phosphate dependent protein;protein_id=CAL22596.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4533418	4534299	.	+	.	ID=id9663;Note=Pfam match to entry PF00291 PALP%2CPyridoxal-phosphate dependent enzyme%2C score 198.10%2C E-value 1.4e-55;gbkey=misc_feature;gene=cysM;inference=protein motif:PF00291
AL590842.1	EMBL	gene	4534356	4534922	.	+	.	ID=gene3978;Name=YPO4019;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4019
AL590842.1	EMBL	CDS	4534356	4534922	.	+	0	ID=cds3906;Parent=gene3978;Dbxref=GOA:Q7CFR9,InterPro:IPR000836,InterPro:IPR029057,UniProtKB/TrEMBL:Q7CFR9,NCBI_GP:CAL22597.1;Name=CAL22597.1;Note=Similar to Bacillus subtilis xanthine phosphoribosyltransferase Xpt SW:XPT_BACSU (P42085) (194 aa) fasta scores: E(): 0.00092%2C 26.8%25 id in 190 aa%2C and to Methanococcus jannaschii adenine phosphoribosyltransferase Apt SW:APT_METJA (Q59049) (183 aa) fasta scores: E(): 1.2e-19%2C 39.7%25 id in 179 aa;gbkey=CDS;product=putative phosphoribosyl transferase protein;protein_id=CAL22597.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4534425	4534889	.	+	.	ID=id9664;Note=Pfam match to entry PF00156 Pribosyltran%2CPhosphoribosyl transferase domain%2C score 37.10%2C E-value 4.1e-07;gbkey=misc_feature;inference=protein motif:PF00156
AL590842.1	EMBL	gene	4535005	4535934	.	+	.	ID=gene3979;Name=YPO4020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4020
AL590842.1	EMBL	CDS	4535005	4535934	.	+	0	ID=cds3907;Parent=gene3979;Dbxref=GOA:Q7CFR8,InterPro:IPR000620,UniProtKB/TrEMBL:Q7CFR8,NCBI_GP:CAL22598.1;Name=CAL22598.1;Note=Poor database matches. Similar to Bacillus subtilis hypothetical protein in YyaM SW:YYAM_BACSU (P37511) (305 aa) fasta scores: E(): 0.0031%2C 23.4%25 id in 295 aa%2C and to Clostridium kluyveri hypothetical protein SW:YCAY_CLOKL (P38943) (311 aa) fasta scores: E(): 0.015%2C 22.7%25 id in 313 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL22598.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4535017	4535085	.	+	.	ID=id9665;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4535098	4535166	.	+	.	ID=id9666;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4535203	4535271	.	+	.	ID=id9667;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4535284	4535352	.	+	.	ID=id9668;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4535386	4535445	.	+	.	ID=id9669;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4535488	4535547	.	+	.	ID=id9670;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4535584	4535643	.	+	.	ID=id9671;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4535671	4535730	.	+	.	ID=id9672;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4535749	4535817	.	+	.	ID=id9673;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4535845	4535913	.	+	.	ID=id9674;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4535936	4537180	.	+	.	ID=gene3980;Name=YPO4021;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4021
AL590842.1	EMBL	CDS	4535936	4537180	.	+	0	ID=cds3908;Parent=gene3980;Dbxref=GOA:Q0WA01,InterPro:IPR011761,InterPro:IPR013816,UniProtKB/TrEMBL:Q0WA01,NCBI_GP:CAL22599.1;Name=CAL22599.1;Note=no significant database hits to the full length CDS. Similar to an internal region of Rhizobium sp hypothetical protein Y4rH SW:Y4RH_RHISN (P55641) (478 aa) fasta scores: E(): 1.8e-06%2C 23.4%25 id in 423 aa. N-terminal region similar to N-terminus of Streptomyces tendae nikkomycin biosynthesis protein%2C putative carboxylase NikS TR:CAC11141 (EMBL:AJ250581) (424 aa) fasta scores: E(): 0.00024%2C 26.6%25 id in 289 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ250581;product=hypothetical protein;protein_id=CAL22599.1;transl_table=11
AL590842.1	EMBL	gene	4537703	4538656	.	+	.	ID=gene3981;Name=YPO4022;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4022
AL590842.1	EMBL	CDS	4537703	4538656	.	+	0	ID=cds3909;Parent=gene3981;Dbxref=InterPro:IPR002491,UniProtKB/TrEMBL:Q0WA00,NCBI_GP:CAL22600.1;Name=CAL22600.1;Note=Probable siderophore-binding protein. Similar to Vibrio anguillarum ferric anguibactin-binding protein FatB SW:FATB_VIBAN (P11460) (322 aa) fasta scores: E(): 2.6e-26%2C31.8%25 id in 305 aa%2C and to Bacillus subtilis ferric anguibactin-binding protein YclQ TR:P94421 (EMBL:D50453) (317 aa) fasta scores: E(): 0%2C 36.1%25 id in 319 aa;gbkey=CDS;inference=similar to sequence:INSDC:D50453;product=putative iron transport protein;protein_id=CAL22600.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4537733	4537765	.	+	.	ID=id9675;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	4537847	4538569	.	+	.	ID=id9676;Note=Pfam match to entry PF01497 Peripla_BP_2%2CPeriplasmic binding protein%2C score 178.50%2C E-value 1.1e-49;gbkey=misc_feature;inference=protein motif:PF01497
AL590842.1	EMBL	gene	4538666	4539625	.	+	.	ID=gene3982;Name=YPO4023;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4023
AL590842.1	EMBL	CDS	4538666	4539625	.	+	0	ID=cds3910;Parent=gene3982;Dbxref=GOA:Q7CFR7,InterPro:IPR000522,InterPro:IPR029022,UniProtKB/TrEMBL:Q7CFR7,NCBI_GP:CAL22601.1;Name=CAL22601.1;Note=Similar to Vibrio anguillarum ferric anguibactin transport system permease protein FatD SW:FATD_VIBAN (P37738) (314 aa) fasta scores: E(): 0%2C 35.6%25 id in 306 aa%2Cand to Neisseria meningitidis putative inner membrane transport protein NMA0451 TR:Q9JWC0 (EMBL:AL162753) (322 aa) fasta scores: E(): 0%2C 49.4%25 id in 312 aa%2C and to Staphylococcus aureus iron transport membrane protein SstA TR:O87825 (EMBL:AJ005352) (323 aa) fasta scores: E(): 0%2C40.0%25 id in 310 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL162753;product=putative iron transport permease;protein_id=CAL22601.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4538684	4538752	.	+	.	ID=id9677;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4538720	4539604	.	+	.	ID=id9678;Note=Pfam match to entry PF01032 FecCD_family%2C FecCD transport family%2C score 168.00%2C E-value 1.5e-46;gbkey=misc_feature;inference=protein motif:PF01032
AL590842.1	EMBL	sequence_feature	4538810	4538878	.	+	.	ID=id9679;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4538891	4538959	.	+	.	ID=id9680;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4538987	4539046	.	+	.	ID=id9681;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4539065	4539133	.	+	.	ID=id9682;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4539191	4539259	.	+	.	ID=id9683;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4539347	4539415	.	+	.	ID=id9684;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4539458	4539526	.	+	.	ID=id9685;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4539545	4539601	.	+	.	ID=id9686;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4539615	4540622	.	+	.	ID=gene3983;Name=YPO4024;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4024
AL590842.1	EMBL	CDS	4539615	4540622	.	+	0	ID=cds3911;Parent=gene3983;Dbxref=GOA:Q0W9Z8,InterPro:IPR000522,InterPro:IPR029022,UniProtKB/TrEMBL:Q0W9Z8,NCBI_GP:CAL22602.1;Name=CAL22602.1;Note=Similar to Vibrio anguillarum ferric anguibactin transport system permease protein FatC SW:FATC_VIBAN (P37737) (317 aa) fasta scores: E(): 0%2C 31.7%25 id in 306 aa%2Cand to Neisseria meningitidis putative inner membrane transport protein NMA0450 TR:Q9JWC1 (EMBL:AL162753) (315 aa) fasta scores: E(): 0%2C 43.0%25 id in 293 aa%2C and to Staphylococcus aureus iron transport membrane protein SstB TR:O87826 (EMBL:AJ005352) (226 aa) fasta scores: E(): 4.9e-25%2C 33.5%25 id in 224 aa;gbkey=CDS;inference=similar to sequence:INSDC:AL162753;product=putative iron transport permease;protein_id=CAL22602.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4539693	4539746	.	+	.	ID=id9687;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4539705	4540607	.	+	.	ID=id9688;Note=Pfam match to entry PF01032 FecCD_family%2C FecCD transport family%2C score 16.20%2C E-value 7.2e-12;gbkey=misc_feature;inference=protein motif:PF01032
AL590842.1	EMBL	sequence_feature	4539789	4539857	.	+	.	ID=id9689;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4539870	4539938	.	+	.	ID=id9690;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4539981	4540049	.	+	.	ID=id9691;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4540068	4540136	.	+	.	ID=id9692;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4540194	4540253	.	+	.	ID=id9693;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4540344	4540412	.	+	.	ID=id9694;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4540455	4540523	.	+	.	ID=id9695;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4540536	4540604	.	+	.	ID=id9696;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4540619	4541377	.	+	.	ID=gene3984;Name=YPO4025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4025
AL590842.1	EMBL	CDS	4540619	4541377	.	+	0	ID=cds3912;Parent=gene3984;Dbxref=GOA:Q7CFR6,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:Q7CFR6,NCBI_GP:CAL22603.1;Name=CAL22603.1;Note=Similar to Escherichia coli ferrichrome transport ATP-binding protein FhuC SW:FHUC_ECOLI (P07821) (265 aa) fasta scores: E(): 9.2e-28%2C 37.0%25 id in 238 aa%2C and to Bacillus subtilis possible iron dicitrate transport ATP-binding protein YclP TR:P94420 (EMBL:D50453) (252 aa) fasta scores: E(): 0%2C 53.4%25 id in 251 aa;gbkey=CDS;inference=similar to sequence:INSDC:D50453;product=putative iron ABC transporter%2C ATP-binding protein;protein_id=CAL22603.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4540697	4541254	.	+	.	ID=id9697;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 167.90%2C E-value 1.7e-46;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	4540718	4540741	.	+	.	ID=id9698;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4541377	4541958	.	-	.	ID=gene3985;Name=YPO4026;end_range=4541958,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4026;partial=true;start_range=.,4541377
AL590842.1	EMBL	CDS	4541377	4541958	.	-	0	ID=cds3913;Parent=gene3985;Dbxref=InterPro:IPR011204,UniProtKB/TrEMBL:Q0W9Z6,NCBI_GP:CAL22604.1;Name=CAL22604.1;Note=Probable gene remnant. Similar to internal region of Wolbachia sp wKue bacteriophage WO Gp8 protein TR:Q9JMN3 (EMBL:AB036666) (339 aa) fasta scores: E(): 7.2e-27%2C 45.6%25 id in 193 aa. C-terminus similar to N-terminal region of Salmonella typhimurium pathogenicity island (SPI-3) protein RhuM TR:Q9Z627 (EMBL:AF106566) (215 aa) fasta scores: E(): 0%2C 81.1%25 id in 122 aa%3B~was marked partial;end_range=4541958,.;gbkey=CDS;inference=similar to sequence:INSDC:AF106566;partial=true;product=conserved hypothetical protein (partial);protein_id=CAL22604.1;start_range=.,4541377;transl_table=11
AL590842.1	EMBL	gene	4543227	4543589	.	+	.	ID=gene3986;Name=YPO4028;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4028
AL590842.1	EMBL	CDS	4543227	4543589	.	+	0	ID=cds3914;Parent=gene3986;Dbxref=GOA:Q7CFR5,InterPro:IPR001387,InterPro:IPR010982,UniProtKB/TrEMBL:Q7CFR5,NCBI_GP:CAL22605.1;Name=CAL22605.1;Note=Similar to Xylella fastidiosa hypothetical protein XF0534 TR:Q9PFX2 (EMBL:AE003901) (114 aa) fasta scores: E(): 0.0036%2C 30.5%25 id in 118 aa. Similar to YPO0883 (97.5%25 identity in 120 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AE003901;product=putative regulator;protein_id=CAL22605.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4543416	4543580	.	+	.	ID=id9699;Note=Pfam match to entry PF01381 HTH_3%2C Helix-turn-helix%2Cscore 31.60%2C E-value 1.8e-05;gbkey=misc_feature;inference=protein motif:PF01381
AL590842.1	EMBL	sequence_feature	4543443	4543508	.	+	.	ID=id9700;Note=Predicted helix-turn-helix motif with score 2582 (+7.98 SD) at aa 73-94%2C sequence FSQYEIAELLGTTQSAVSQWEA;gbkey=misc_feature
AL590842.1	EMBL	pseudogene	4543628	4544560	.	+	.	ID=gene3987;Name=YPO4029;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO4029;pseudo=true
AL590842.1	EMBL	CDS	4543628	4544560	.	+	0	ID=cds3915;Parent=gene3987;Note=Similar to Bacteriophage HK022 IS903 transposase TR:Q9MCT5 (EMBL:AF069308) (307 aa) fasta scores: E(): 0%2C69.6%25 id in 306 aa%2C and to Escherichia coli coli transposable element variant IS903.B present on kanamycin resistance transposon Tn 2680 TR:Q48346 (EMBL:X02527) (307 aa) fasta scores: E(): 0%2C 69.6%25 id in 306 aa. Contains several frameshifts%2C degenerate CDS;gbkey=CDS;inference=similar to sequence:INSDC:X02527;product=IS903 transposase (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	4544734	4544979	.	+	.	ID=gene3988;Name=YPO4031;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4031
AL590842.1	EMBL	CDS	4544734	4544979	.	+	0	ID=cds3916;Parent=gene3988;Dbxref=InterPro:IPR007684,UniProtKB/TrEMBL:Q74QR9,NCBI_GP:CAL22607.1;Name=CAL22607.1;Note=Similar to the N-terminal regions of Serratia marcescens transcriptional activator RegC TR:Q54424 (EMBL:U31763) (75 aa) fasta scores: E(): 1.5e-12%2C 57.4%25 id in 61 aa%2C and Rahnella aquatilis positive levansucrase regulator LsrS TR:O87909 (EMBL:U91484) (70 aa) fasta scores: E(): 1.4e-15%2C 67.2%25 id in 58 aa%2C and to Bacteriophage 186 late control protein B SW:VPB_BP186 (P08711) (72 aa) fasta scores: E(): 3.3e-12%2C 54.4%25 id in 57 aa. Orthologues contain lower levels of similartiy in the C-terminal regions;gbkey=CDS;inference=similar to sequence:INSDC:U91484;product=putative regulatory protein;protein_id=CAL22607.1;transl_table=11
AL590842.1	EMBL	gene	4545247	4546554	.	-	.	ID=gene3989;Name=YPO4032;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4032
AL590842.1	EMBL	CDS	4545247	4546554	.	-	0	ID=cds3917;Parent=gene3989;Dbxref=UniProtKB/TrEMBL:Q0W9Z3,NCBI_GP:CAL22608.1;Name=CAL22608.1;Note=no significant database hits. CDS DNA has a low G+C content%2C 31.03%25;gbkey=CDS;product=hypothetical protein;protein_id=CAL22608.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4545577	4545606	.	-	.	ID=id9701;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.;gbkey=misc_feature;inference=protein motif:ProSite:PS00339
AL590842.1	EMBL	gene	4546613	4547806	.	-	.	ID=gene3990;Name=YPO4033;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4033
AL590842.1	EMBL	CDS	4546613	4547806	.	-	0	ID=cds3918;Parent=gene3990;Dbxref=GOA:Q7CFR4,InterPro:IPR002104,InterPro:IPR011010,InterPro:IPR013762,InterPro:IPR023109,InterPro:IPR025166,UniProtKB/TrEMBL:Q7CFR4,NCBI_GP:CAL22609.1;Name=CAL22609.1;Note=Similar to Escherichia coli CP4-like integrase Int TR:O85610 (EMBL:AF071034) (393 aa) fasta scores: E(): 0%2C71.2%25 id in 386 aa%2C and to Bacteriophage SF6 integrase Int SW:VINT_BPSF6 (P37317) (385 aa) fasta scores: E(): 0%2C 48.0%25 id in 383 aa. Similar to YPO0887 (62.4%25 identity in 386 aa overlap);gbkey=CDS;inference=similar to sequence:INSDC:AF071034;product=putative phage integrase;protein_id=CAL22609.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4546679	4547206	.	-	.	ID=id9702;Note=Pfam match to entry PF00589 Phage_integrase%2C Phage integrase family%2C score 102.10%2C E-value 1.1e-26;gbkey=misc_feature;inference=protein motif:PF00589
AL590842.1	EMBL	tRNA	4547972	4548062	.	-	.	ID=rna106;Note=tRNA SeC(p) anticodon TCA%2C Cove score 71.03;gbkey=tRNA;product=tRNA-Sec
AL590842.1	EMBL	exon	4547972	4548062	.	-	.	ID=id9703;Parent=rna106;Note=tRNA SeC(p) anticodon TCA%2C Cove score 71.03;gbkey=tRNA;product=tRNA-Sec
AL590842.1	EMBL	gene	4548192	4549385	.	-	.	ID=gene3991;Name=YPO4034;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4034
AL590842.1	EMBL	CDS	4548192	4549385	.	-	0	ID=cds3919;Parent=gene3991;Dbxref=GOA:Q7CFR3,InterPro:IPR009057,InterPro:IPR018060,InterPro:IPR018062,InterPro:IPR020449,InterPro:IPR028082,UniProtKB/TrEMBL:Q7CFR3,NCBI_GP:CAL22610.1;Name=CAL22610.1;Note=N-terminus similar to Bacillus subtilis catabolite control protein A CcpA SW:CCPA_BACSU (P25144) (334 aa) fasta scores: E(): 8.7e-06%2C 23.8%25 id in 281 aa Full length CDS similar to Escherichia coli xylose operon regulatory protein XylR SW:XYLR_ECOLI (P37390) (392 aa) fasta scores: E(): 0%2C 79.7%25 id in 395 aa;gbkey=CDS;product=putative AraC-family transcriptional regulatory protein;protein_id=CAL22610.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4548210	4548470	.	-	.	ID=id9704;Note=Pfam match to entry PF00165 HTH_AraC%2C Bacterial regulatory helix-turn-helix proteins%2C araC family%2C score 113.40%2C E-value 4.3e-30;gbkey=misc_feature;inference=protein motif:PF00165
AL590842.1	EMBL	sequence_feature	4548231	4548359	.	-	.	ID=id9705;Note=PS00041 Bacterial regulatory proteins%2C araC family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00041
AL590842.1	EMBL	sequence_feature	4548402	4548467	.	-	.	ID=id9706;Note=Predicted helix-turn-helix motif with score 1130 (+3.04 SD) at aa 307-328%2C sequence IKVEQVLDAVGMSRSNLEKRFK;gbkey=misc_feature
AL590842.1	EMBL	gene	4549475	4550659	.	-	.	ID=gene3992;Name=YPO4035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4035
AL590842.1	EMBL	CDS	4549475	4550659	.	-	0	ID=cds3920;Parent=gene3992;Dbxref=GOA:Q74QR5,InterPro:IPR001851,UniProtKB/TrEMBL:Q74QR5,NCBI_GP:CAL22611.1;Name=CAL22611.1;Note=Similar to Escherichia coli ribose transport system permease protein RbsC SW:RBSC_ECOLI (P04984) (321 aa) fasta scores: E(): 1.4e-22%2C 36.8%25 id in 356 aa%2C and to Escherichia coli xylose transport system permease protein XylH SW:XYLH_ECOLI (P37389) (393 aa) fasta scores: E(): 0%2C84.6%25 id in 395 aa;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=sugar transport system permease protein;protein_id=CAL22611.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4549502	4549552	.	-	.	ID=id9707;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4549613	4549678	.	-	.	ID=id9708;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4549718	4549783	.	-	.	ID=id9709;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4549862	4549927	.	-	.	ID=id9710;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4550069	4550134	.	-	.	ID=id9711;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4550180	4550245	.	-	.	ID=id9712;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4550282	4550347	.	-	.	ID=id9713;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4550393	4550458	.	-	.	ID=id9714;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4550495	4550551	.	-	.	ID=id9715;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4550646	4552178	.	-	.	ID=gene3993;Name=YPO4036;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4036
AL590842.1	EMBL	CDS	4550646	4552178	.	-	0	ID=cds3921;Parent=gene3993;Dbxref=GOA:Q7CFR2,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR013455,InterPro:IPR017871,InterPro:IPR027417,NCBI_GP:CAL22612.1;Name=CAL22612.1;Note=Similar to Escherichia coli galactoside transport ATP-binding protein MglA SW:MGLA_ECOLI (P23199) (506 aa) fasta scores: E(): 0%2C 41.7%25 id in 499 aa%2C and to Escherichia coli D-xylose transport ATP-binding protein XylG SW:XYLG_ECOLI (P37388) (513 aa) fasta scores: E(): 0%2C78.7%25 id in 508 aa;gbkey=CDS;product=sugar transport ATP-binding protein;protein_id=CAL22612.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4550736	4551320	.	-	.	ID=id9716;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 81.70%2C E-value 1.5e-20;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	4550919	4550963	.	-	.	ID=id9717;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	4551525	4552091	.	-	.	ID=id9718;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 168.60%2C E-value 1e-46;gbkey=misc_feature;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	4552047	4552070	.	-	.	ID=id9719;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4552386	4553381	.	-	.	ID=gene3994;Name=YPO4037;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4037
AL590842.1	EMBL	CDS	4552386	4553381	.	-	0	ID=cds3922;Parent=gene3994;Dbxref=GOA:Q7CFR1,InterPro:IPR013456,InterPro:IPR025997,InterPro:IPR028082,UniProtKB/TrEMBL:Q7CFR1,NCBI_GP:CAL22613.1;Name=CAL22613.1;Note=Similar to Agrobacterium tumefaciens multiple sugar-binding periplasmic receptor ChvE SW:CVE1_AGRTU (P25548) (354 aa) fasta scores: E(): 3.6e-19%2C 36.0%25 id in 350 aa%2C and to Escherichia coli D-xylose-binding periplasmic protein precursor XylF SW:XYLF_ECOLI (P37387) (330 aa) fasta scores: E(): 0%2C 82.1%25 id in 330 aa;gbkey=CDS;product=sugar-binding periplasmic protein;protein_id=CAL22613.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4552560	4553312	.	-	.	ID=id9720;Note=Pfam match to entry PF00532 Peripla_BP_like%2CPeriplasmic binding proteins and sugar binding domain of the LacI family.%2C score 63.30%2C E-value 5.3e-15;gbkey=misc_feature;inference=protein motif:PF00532
AL590842.1	EMBL	gene	4553844	4555163	.	+	.	ID=gene3995;Name=xylA;gbkey=Gene;gene=xylA;gene_biotype=protein_coding;locus_tag=YPO4038
AL590842.1	EMBL	CDS	4553844	4555163	.	+	0	ID=cds3923;Parent=gene3995;Dbxref=GOA:Q8Z9Z1,InterPro:IPR001998,InterPro:IPR013022,InterPro:IPR013452,NCBI_GP:CAL22614.1;Name=CAL22614.1;Note=Similar to Escherichia coli xylose isomerase XylA SW:XYLA_ECOLI (P00944) (440 aa) fasta scores: E(): 0%2C 85.4%25 id in 438 aa%2C and to Klebsiella pneumoniae xylose isomerase XylA SW:XYLA_KLEPN (P29442) (440 aa) fasta scores: E(): 0%2C84.2%25 id in 438 aa;gbkey=CDS;gene=xylA;product=xylose isomerase;protein_id=CAL22614.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4553928	4555154	.	+	.	ID=id9721;Note=Pfam match to entry PF00259 Xylose_isom%2C Xylose isomerase%2C score 873.40%2C E-value 7.2e-259;gbkey=misc_feature;gene=xylA;inference=protein motif:PF00259
AL590842.1	EMBL	sequence_feature	4554141	4554170	.	+	.	ID=id9722;Note=PS00173 Xylose isomerase signature 2.;gbkey=misc_feature;gene=xylA;inference=protein motif:ProSite:PS00173
AL590842.1	EMBL	sequence_feature	4554534	4554557	.	+	.	ID=id9723;Note=PS00172 Xylose isomerase signature 1.;gbkey=misc_feature;gene=xylA;inference=protein motif:ProSite:PS00172
AL590842.1	EMBL	gene	4555287	4556741	.	+	.	ID=gene3996;Name=xylB;gbkey=Gene;gene=xylB;gene_biotype=protein_coding;locus_tag=YPO4039
AL590842.1	EMBL	CDS	4555287	4556741	.	+	0	ID=cds3924;Parent=gene3996;Dbxref=GOA:Q74QR1,InterPro:IPR006000,InterPro:IPR018483,InterPro:IPR018484,InterPro:IPR018485,UniProtKB/TrEMBL:Q74QR1,NCBI_GP:CAL22615.1;Name=CAL22615.1;Note=Similar to Escherichia coli xylulose kinase XylB SW:XYLB_ECOLI (P09099) (484 aa) fasta scores: E(): 0%2C 72.0%25 id in 482 aa%2C and to Klebsiella pneumoniae xylulose kinase XylB SW:XYLB_KLEPN (P29444) (483 aa) fasta scores: E(): 0%2C66.4%25 id in 482 aa;gbkey=CDS;gene=xylB;product=xylulose kinase;protein_id=CAL22615.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4555512	4556573	.	+	.	ID=id9724;Note=Pfam match to entry PF00370 FGGY%2C FGGY family of carbohydrate kinases%2C score 561.30%2C E-value 6.5e-165;gbkey=misc_feature;gene=xylB;inference=protein motif:PF00370
AL590842.1	EMBL	sequence_feature	4555662	4555700	.	+	.	ID=id9725;Note=PS00933 FGGY family of carbohydrate kinases signature 1.;gbkey=misc_feature;gene=xylB;inference=protein motif:ProSite:PS00933
AL590842.1	EMBL	sequence_feature	4556145	4556177	.	+	.	ID=id9726;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=xylB;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	gene	4556859	4557845	.	-	.	ID=gene3997;Name=YPO4040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4040
AL590842.1	EMBL	CDS	4556859	4557845	.	-	0	ID=cds3925;Parent=gene3997;Dbxref=GOA:Q7CFQ9,InterPro:IPR000259,InterPro:IPR008966,UniProtKB/TrEMBL:Q7CFQ9,NCBI_GP:CAL22616.1;Name=CAL22616.1;Note=Similar to Escherichia coli hypothetical protein YbgO SW:YBGO_ECOLI (P75748) (353 aa) fasta scores: E(): 7.7e-20%2C 31.9%25 id in 348 aa%2C and to Escherichia coli hypothetical protein YqiI SW:YQII_ECOLI (P76656) (354 aa) fasta scores: E(): 1e-11%2C 26.7%25 id in 352 aa;gbkey=CDS;product=putative exported protein;protein_id=CAL22616.1;transl_table=11
AL590842.1	EMBL	gene	4557884	4558651	.	-	.	ID=gene3998;Name=YPO4041;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4041
AL590842.1	EMBL	CDS	4557884	4558651	.	-	0	ID=cds3926;Parent=gene3998;Dbxref=GOA:Q306L9,InterPro:IPR001829,InterPro:IPR008962,InterPro:IPR016147,InterPro:IPR016148,InterPro:IPR018046,UniProtKB/TrEMBL:Q306L9,NCBI_GP:CAL22617.1;Name=CAL22617.1;Note=Similar to Proteus mirabilis fimbrial chaperone MrpD TR:Q51905 (EMBL:Z32686) (252 aa) fasta scores: E(): 0%2C44.9%25 id in 247 aa%2C and to Escherichia coli hypothetical fimbrial chaperone YbgP SW:YBGP_ECOLI (P75749) (242 aa) fasta scores: E(): 0%2C 47.1%25 id in 238 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z32686;product=putative fimbrial chaperone;protein_id=CAL22617.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4557956	4558531	.	-	.	ID=id9727;Note=Pfam match to entry PF00345 pili_assembly%2CGram-negative pili assembly chaperone%2C score 222.10%2CE-value 1.5e-64;gbkey=misc_feature;inference=protein motif:PF00345
AL590842.1	EMBL	sequence_feature	4558268	4558321	.	-	.	ID=id9728;Note=PS00635 Gram-negative pili assembly chaperone signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00635
AL590842.1	EMBL	sequence_feature	4558544	4558609	.	-	.	ID=id9729;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	pseudogene	4558744	4561234	.	-	.	ID=gene3999;Name=YPO4042;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO4042;pseudo=true
AL590842.1	EMBL	CDS	4558744	4561234	.	-	0	ID=cds3927;Parent=gene3999;Note=Similar to Proteus mirabilis usher protein MrpC TR:Q51904 (EMBL:Z32686) (871 aa) fasta scores: E(): 0%2C40.6%25 id in 844 aa%2C and to Escherichia coli hypothetical outer membrane usher protein YqiG SW:YQIG_ECOLI (P76655) (821 aa) fasta scores: E(): 0%2C 44.3%25 id in 804 aa. Contains frameshifts after codons 593 and 619. The sequence has been checked and is believed to be correct;gbkey=CDS;inference=similar to sequence:INSDC:Z32686;product=fimbrial usher protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	4558786	4559373	.	-	.	ID=id9730;Note=Pfam match to entry PF00577 Usher%2C Fimbrial Usher proteins%2C score 220.20%2C E-value 3e-62;gbkey=misc_feature;inference=protein motif:PF00577
AL590842.1	EMBL	sequence_feature	4559459	4561135	.	-	.	ID=id9731;Note=Pfam match to entry PF00577 Usher%2C Fimbrial Usher proteins%2C score 654.40%2C E-value 5.9e-193;gbkey=misc_feature;inference=protein motif:PF00577
AL590842.1	EMBL	sequence_feature	4560275	4560307	.	-	.	ID=id9732;Note=PS01151 Fimbrial biogenesis outer membrane usher protein signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01151
AL590842.1	EMBL	sequence_feature	4561133	4561198	.	-	.	ID=id9733;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4561310	4561867	.	-	.	ID=gene4000;Name=YPO4044;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4044
AL590842.1	EMBL	CDS	4561310	4561867	.	-	0	ID=cds3928;Parent=gene4000;Dbxref=GOA:Q0W9Y3,InterPro:IPR000259,InterPro:IPR008966,UniProtKB/TrEMBL:Q0W9Y3,NCBI_GP:CAL22619.1;Name=CAL22619.1;Note=Similar to Salmonella typhimurium long polar fimbria protein A LpfA SW:LPFA_SALTY (P43660) (178 aa) fasta scores: E(): 3.4e-11%2C 32.8%25 id in 186 aa%2C and to Escherichia coli hypothetical fimbrial-like protein YbgD SW:YBGD_ECOLI (P37909) (188 aa) fasta scores: E(): 3.7e-15%2C39.5%25 id in 190 aa;gbkey=CDS;product=fimbrial protein;protein_id=CAL22619.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4561313	4561780	.	-	.	ID=id9734;Note=Pfam match to entry PF00419 Fimbrial%2C Fimbrial proteins%2C score 129.20%2C E-value 7.7e-35;gbkey=misc_feature;inference=protein motif:PF00419
AL590842.1	EMBL	sequence_feature	4561796	4561846	.	-	.	ID=id9735;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4562749	4563741	.	-	.	ID=gene4001;Name=YPO4045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4045
AL590842.1	EMBL	CDS	4562749	4563741	.	-	0	ID=cds3929;Parent=gene4001;Dbxref=GOA:Q7CFQ8,InterPro:IPR002656,UniProtKB/TrEMBL:Q7CFQ8,NCBI_GP:CAL22620.1;Name=CAL22620.1;Note=Similar to Escherichia coli hypothetical protein YiaH SW:YIAH_ECOLI (P37669) (331 aa) fasta scores: E(): 0%2C58.0%25 id in 331 aa%2C and to Rickettsia prowazekii hypothetical protein RP338 TR:Q9ZDJ0 (EMBL:AJ235271) (347 aa) fasta scores: E(): 1.2e-11%2C 25.1%25 id in 339 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ235271;product=putative membrane protein;protein_id=CAL22620.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4562794	4562859	.	-	.	ID=id9736;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4562890	4562955	.	-	.	ID=id9737;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4562977	4563036	.	-	.	ID=id9738;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4563082	4563132	.	-	.	ID=id9739;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4563172	4563228	.	-	.	ID=id9740;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4563274	4563324	.	-	.	ID=id9741;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4563340	4563396	.	-	.	ID=id9742;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4563442	4563504	.	-	.	ID=id9743;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4563541	4563606	.	-	.	ID=id9744;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4563637	4563702	.	-	.	ID=id9745;Note=one of 10 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4564039	4565501	.	-	.	ID=id9746;Note=IS1397-like insertion element: IS1661;gbkey=misc_feature
AL590842.1	EMBL	INVERTED	4564039	4564071	.	+	.	ID=id9747;Note=Inverted repeat for IS1661 insertion element;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	4564104	4564619	.	+	.	ID=gene4002;Name=YPO4046;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4046
AL590842.1	EMBL	CDS	4564104	4564619	.	+	0	ID=cds3930;Parent=gene4002;Dbxref=GOA:Q74RD6,InterPro:IPR009057,InterPro:IPR010921,InterPro:IPR011991,UniProtKB/TrEMBL:Q74RD6,NCBI_GP:CAL22621.1;Name=CAL22621.1;Note=Similar to Escherichia coli insertion element IS1397 OrfA hypothetical 20.1 kDa protein SW:YI9A_ECOLI (Q47309) (173 aa) fasta scores: E(): 2.3e-20%2C 39.6%25 id in 169 aa;gbkey=CDS;product=insertion element IS1661 DNA-binding protein;protein_id=CAL22621.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4564161	4564226	.	+	.	ID=id9748;Note=Predicted helix-turn-helix motif with score 1691 (+4.95 SD) at aa 20-41%2C sequence ATLRETARQFSVGKSPLTRWIR;gbkey=misc_feature
AL590842.1	EMBL	gene	4564673	4565458	.	+	.	ID=gene4003;Name=YPO4047;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4047
AL590842.1	EMBL	CDS	4564673	4565458	.	+	0	ID=cds3931;Parent=gene4003;Dbxref=GOA:Q7CKI6,InterPro:IPR001584,InterPro:IPR012337,InterPro:IPR025948,UniProtKB/TrEMBL:Q7CKI6,NCBI_GP:CAL22622.1;Name=CAL22622.1;Note=Similar to Escherichia coli insertion sequence IS1397 transposase%2C OrfB TR:Q47310 (EMBL:X92970) (240 aa) fasta scores: E(): 0%2C 53.0%25 id in 234 aa;gbkey=CDS;inference=similar to sequence:INSDC:X92970;product=transposase for insertion sequence IS1661;protein_id=CAL22622.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4564961	4565440	.	+	.	ID=id9749;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 141.50%2C E-value 9.6e-40;gbkey=misc_feature;inference=protein motif:PF00665
AL590842.1	EMBL	INVERTED	4565467	4565501	.	-	.	ID=id9750;Note=Inverted repeat for IS1661 insertion element;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	4565931	4567160	.	+	.	ID=gene4004;Name=cmr;gbkey=Gene;gene=cmr;gene_biotype=protein_coding;gene_synonym=mdfA;locus_tag=YPO4048
AL590842.1	EMBL	CDS	4565931	4567160	.	+	0	ID=cds3932;Parent=gene4004;Dbxref=GOA:Q7CFQ6,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q7CFQ6,NCBI_GP:CAL22623.1;Name=CAL22623.1;Note=Similar to Escherichia coli multidrug translocase MdfA SW:MDFA_ECOLI (Q46966) (410 aa) fasta scores: E(): 0%2C73.0%25 id in 400 aa%2C and to Escherichia coli hypothetical protein YjiO SW:YJIO_ECOLI (P39386) (410 aa) fasta scores: E(): 0%2C 43.2%25 id in 377 aa;gbkey=CDS;gene=cmr;inference=protein motif:TMHMM:2.0;product=multidrug translocase;protein_id=CAL22623.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4565976	4566044	.	+	.	ID=id9751;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cmr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4566087	4566146	.	+	.	ID=id9752;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cmr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4566180	4566239	.	+	.	ID=id9753;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cmr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4566252	4566320	.	+	.	ID=id9754;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cmr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4566357	4566425	.	+	.	ID=id9755;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cmr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4566438	4566497	.	+	.	ID=id9756;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cmr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4566591	4566659	.	+	.	ID=id9757;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cmr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4566702	4566770	.	+	.	ID=id9758;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cmr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4566789	4566857	.	+	.	ID=id9759;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cmr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4566867	4566935	.	+	.	ID=id9760;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cmr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4566972	4567025	.	+	.	ID=id9761;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cmr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4567068	4567127	.	+	.	ID=id9762;Note=one of 12 probable transmembrane helices predicted;gbkey=misc_feature;gene=cmr;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4567870	4568451	.	+	.	ID=gene4005;Name=YPO4049;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4049
AL590842.1	EMBL	CDS	4567870	4568451	.	+	0	ID=cds3933;Parent=gene4005;Dbxref=InterPro:IPR025320,UniProtKB/TrEMBL:Q0W9X8,NCBI_GP:CAL22624.1;Name=CAL22624.1;Note=No significant database matches to the full length CDS. Similar to an internal region of Escherichia coli O157:H7 hypothetical protein Z4810 TR:AAG58551 (EMBL:AE005568) (303 aa) fasta scores: E(): 0.0042%2C 25.4%25 id in 236 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE005568;product=putative membrane protein;protein_id=CAL22624.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4567963	4568022	.	+	.	ID=id9763;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4568032	4568100	.	+	.	ID=id9764;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4568465	4568797	.	-	.	ID=gene4006;Name=YPO4050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4050
AL590842.1	EMBL	CDS	4568465	4568797	.	-	0	ID=cds3934;Parent=gene4006;Dbxref=UniProtKB/TrEMBL:Q7CFQ5,NCBI_GP:CAL22625.1;Name=CAL22625.1;Note=Poor database matches%2C similar to C-terminal region of Saccharomyces cerevisiae chromosome XVI hypothetical protein YPL200w TR:Q08955 (EMBL:Z73556) (156 aa) fasta scores: E(): 0.8%2C 24.0%25 id in 104 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z73556;product=putative membrane protein;protein_id=CAL22625.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4568501	4568566	.	-	.	ID=id9765;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4568597	4568653	.	-	.	ID=id9766;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4569065	4569550	.	+	.	ID=gene4007;Name=tnpA;gbkey=Gene;gene=tnpA;gene_biotype=protein_coding;locus_tag=YPO4051;partial=true;start_range=.,4569065
AL590842.1	EMBL	CDS	4569065	4569550	.	+	0	ID=cds3935;Parent=gene4007;Dbxref=GOA:Q0W9X6,InterPro:IPR002513,UniProtKB/TrEMBL:Q0W9X6,NCBI_GP:CAL22626.1;Name=CAL22626.1;Note=Probable gene remnant. Similar to internal regions of Yersinia pestis plasmid pCD1 transposase TnpA TR:O68711 (EMBL:AF053946) (771 aa) fasta scores: E(): 0%2C 86.6%25 id in 134 aa%2C and Pseudomonas sp BW13 transposase TnpA TR:CAC14717 (EMBL:Y17830) (1001 aa) fasta scores: E(): 0%2C86.2%25 id in 138 aa%3B~was marked partial;gbkey=CDS;gene=tnpA;inference=similar to sequence:INSDC:Y17830;partial=true;product=transposase (partial);protein_id=CAL22626.1;start_range=.,4569065;transl_table=11
AL590842.1	EMBL	sequence_feature	4569086	4569466	.	+	.	ID=id9767;Note=Pfam match to entry PF01526 Transposase_7%2CTransposase%2C score 279.20%2C E-value 5.4e-80;gbkey=misc_feature;gene=tnpA;inference=protein motif:PF01526
AL590842.1	EMBL	pseudogene	4569557	4571510	.	-	.	ID=gene4008;Name=fdhA;gbkey=Gene;gene=fdhA;gene_biotype=pseudogene;gene_synonym=selB;locus_tag=YPO4052;pseudo=true
AL590842.1	EMBL	CDS	4569557	4571510	.	-	0	ID=cds3936;Parent=gene4008;Note=Similar to Escherichia coli selenocysteine-specific elongation factor SelB SW:SELB_ECOLI (P14081) (614 aa) fasta scores: E(): 0%2C 59.4%25 id in 646 aa%2C and to Haemophilus influenzae selenocysteine-specific elongation factor SelB SW:SELB_HAEIN (P43927) (619 aa) fasta scores: E(): 0%2C 44.5%25 id in 650 aa. Contains a frameshift after codon 71. Frame shift occurs at a poly G decamer. The sequence has been checked and is believed to be correct;gbkey=CDS;gene=fdhA;product=selenocysteine-specific elongation factor (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	4570700	4571272	.	-	.	ID=id9768;Note=Pfam match to entry PF00009 GTP_EFTU%2C Elongation factor Tu family%2C score 78.50%2C E-value 1.6e-22;gbkey=misc_feature;gene=fdhA;inference=protein motif:PF00009
AL590842.1	EMBL	sequence_feature	4571298	4571510	.	-	.	ID=id9769;Note=Pfam match to entry PF00009 GTP_EFTU%2C Elongation factor Tu family%2C score 57.90%2C E-value 2.2e-16;gbkey=misc_feature;gene=fdhA;inference=protein motif:PF00009
AL590842.1	EMBL	sequence_feature	4571388	4571435	.	-	.	ID=id9770;Note=PS00301 GTP-binding elongation factors signature.;gbkey=misc_feature;gene=fdhA;inference=protein motif:ProSite:PS00301
AL590842.1	EMBL	sequence_feature	4571469	4571492	.	-	.	ID=id9771;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=fdhA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4571507	4572895	.	-	.	ID=gene4009;Name=fdhA;gbkey=Gene;gene=fdhA;gene_biotype=protein_coding;gene_synonym=selA;locus_tag=YPO4054
AL590842.1	EMBL	CDS	4571507	4572895	.	-	0	ID=cds3937;Parent=gene4009;Dbxref=GOA:Q8Z9Y1,InterPro:IPR004534,InterPro:IPR015421,InterPro:IPR015424,InterPro:IPR018319,InterPro:IPR025862,NCBI_GP:CAL22628.1;Name=CAL22628.1;Note=Similar to Escherichia coli L-seryl-tRNA selenium transferase SelA SW:SELA_ECOLI (P23328) (463 aa) fasta scores: E(): 0%2C 69.2%25 id in 461 aa%2C and to Haemophilus influenzae L-seryl-tRNA selenium transferase SelA SW:SELA_HAEIN (P43910) (461 aa) fasta scores: E(): 0%2C 55.4%25 id in 457 aa;gbkey=CDS;gene=fdhA;product=L-seryl-tRNA selenium transferase;protein_id=CAL22628.1;transl_table=11
AL590842.1	EMBL	gene	4573079	4574008	.	-	.	ID=gene4010;Name=fdhE;gbkey=Gene;gene=fdhE;gene_biotype=protein_coding;locus_tag=YPO4055
AL590842.1	EMBL	CDS	4573079	4574008	.	-	0	ID=cds3938;Parent=gene4010;Dbxref=GOA:Q8Z9Y0,InterPro:IPR006452,InterPro:IPR024064,NCBI_GP:CAL22629.1;Name=CAL22629.1;Note=Similar to Escherichia coli formate dehydrogenase formation protein FdhE SW:FDHE_ECOLI (P13024) (309 aa) fasta scores: E(): 0%2C 68.9%25 id in 309 aa%2C and to Haemophilus influenzae formate dehydrogenase formation protein FdhE SW:FDHE_HAEIN (P44452) (302 aa) fasta scores: E(): 0%2C 50.8%25 id in 309 aa;gbkey=CDS;gene=fdhE;product=putative formate dehydrogenase formation protein;protein_id=CAL22629.1;transl_table=11
AL590842.1	EMBL	gene	4574008	4574682	.	-	.	ID=gene4011;Name=fdoI;gbkey=Gene;gene=fdoI;gene_biotype=protein_coding;locus_tag=YPO4056
AL590842.1	EMBL	CDS	4574008	4574682	.	-	0	ID=cds3939;Parent=gene4011;Dbxref=GOA:Q7CFQ4,InterPro:IPR006471,InterPro:IPR016174,UniProtKB/TrEMBL:Q7CFQ4,NCBI_GP:CAL22630.1;Name=CAL22630.1;Note=Similar to Escherichia coli formate dehydrogenase%2Ccytochrome b556 protein FdoI SW:FDOI_ECOLI (P32174) (211 aa) fasta scores: E(): 0%2C 79.5%25 id in 210 aa%2C and to Haemophilus influenzae formate dehydrogenase%2C cytochrome b556 protein FdxI SW:FDXI_HAEIN (P44451) (238 aa) fasta scores: E(): 0%2C 50.0%25 id in 202 aa;gbkey=CDS;gene=fdoI;inference=protein motif:TMHMM:2.0;product=formate dehydrogenase%2C cytochrome b556 protein;protein_id=CAL22630.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4574164	4574229	.	-	.	ID=id9772;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=fdoI;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4574275	4574340	.	-	.	ID=id9773;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=fdoI;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4574458	4574523	.	-	.	ID=id9774;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=fdoI;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4574554	4574619	.	-	.	ID=id9775;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=fdoI;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4574679	4575650	.	-	.	ID=gene4012;Name=fdoH;gbkey=Gene;gene=fdoH;gene_biotype=protein_coding;locus_tag=YPO4057
AL590842.1	EMBL	CDS	4574679	4575650	.	-	0	ID=cds3940;Parent=gene4012;Dbxref=GOA:Q7CFQ3,InterPro:IPR001450,InterPro:IPR006470,InterPro:IPR014603,InterPro:IPR015246,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:Q7CFQ3,NCBI_GP:CAL22631.1;Name=CAL22631.1;Note=Similar to Escherichia coli formate dehydrogenase-O%2Ciron-sulfur subunit FdoH SW:FDOH_ECOLI (P32175) (300 aa) fasta scores: E(): 0%2C 86.3%25 id in 292 aa%2C and to Escherichia coli formate dehydrogenase%2C nitrate-inducible%2Ciron-sulfur subunit FdnH SW:FDNH_ECOLI (P24184) (294 aa) fasta scores: E(): 0%2C 78.2%25 id in 293 aa;gbkey=CDS;gene=fdoH;product=formate dehydrogenase-O%2C iron-sulfur subunit;protein_id=CAL22631.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4575198	4575269	.	-	.	ID=id9776;Note=Pfam match to entry PF00037 fer4%2C 4Fe-4S binding domain%2C score 25.70%2C E-value 0.00027;gbkey=misc_feature;gene=fdoH;inference=protein motif:PF00037
AL590842.1	EMBL	sequence_feature	4575213	4575248	.	-	.	ID=id9777;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature.;gbkey=misc_feature;gene=fdoH;inference=protein motif:ProSite:PS00198
AL590842.1	EMBL	pseudogene	4575666	4578710	.	-	.	ID=gene4013;Name=fdoG;gbkey=Gene;gene=fdoG;gene_biotype=pseudogene;locus_tag=YPO4058;pseudo=true
AL590842.1	EMBL	CDS	4575666	4578710	.	-	0	ID=cds3941;Parent=gene4013;Note=Similar to Escherichia coli formate dehydrogenase-O%2Cmajor subunit FdoG SW:FDOG_ECOLI (P32176) (1016 aa) fasta scores: E(): 0%2C 85.7%25 id in 1016 aa%2C and to Escherichia coli formate dehydrogenase%2C nitrate-inducible%2C major subunit FdnG SW:FDNG_ECOLI (P24183) (1015 aa) fasta scores: E(): 0%2C 78.4%25 id in 1014 aa. Contains a nonsense mutation (opal) at codon 196. The sequence has been checked and is believed to be correct. The E. coli protein also contains an opal codon at the same position%2C but the active site selenocysteine is incorporated by the selenocysteine tRNA;gbkey=CDS;gene=fdoG;product=formate dehydrogenase-O%2C major subunit (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	sequence_feature	4575684	4576043	.	-	.	ID=id9778;Note=Pfam match to entry PF01568 Molydop_binding%2CMolydopterin dinucleotide binding domain%2C score 153.60%2CE-value 3.5e-42;gbkey=misc_feature;gene=fdoG;inference=protein motif:PF01568
AL590842.1	EMBL	sequence_feature	4575849	4575932	.	-	.	ID=id9779;Note=PS00932 Prokaryotic molybdopterin oxidoreductases signature 3.;gbkey=misc_feature;gene=fdoG;inference=protein motif:ProSite:PS00932
AL590842.1	EMBL	sequence_feature	4578513	4578569	.	-	.	ID=id9780;Note=PS00551 Prokaryotic molybdopterin oxidoreductases signature 1.;gbkey=misc_feature;gene=fdoG;inference=protein motif:ProSite:PS00551
AL590842.1	EMBL	gene	4578907	4579731	.	+	.	ID=gene4014;Name=fdhD;gbkey=Gene;gene=fdhD;gene_biotype=protein_coding;locus_tag=YPO4060
AL590842.1	EMBL	CDS	4578907	4579731	.	+	0	ID=cds3942;Parent=gene4014;Dbxref=GOA:Q8Z9X7,InterPro:IPR003786,InterPro:IPR016193,NCBI_GP:CAL22633.1;Name=CAL22633.1;Note=Similar to Wolinella succinogenes formate dehydrogenase protein FdhD SW:FDHD_WOLSU (P28181) (286 aa) fasta scores: E(): 8.5e-18%2C 30.8%25 id in 250 aa%2C and to Escherichia coli protein necessary for nitrate inducible formate dehydrogenase activity FdhD SW:FDHD_ECOLI (P32177) (277 aa) fasta scores: E(): 0%2C 71.3%25 id in 275 aa;gbkey=CDS;gene=fdhD;product=putative formate dehydrogenase;protein_id=CAL22633.1;transl_table=11
AL590842.1	EMBL	gene	4580167	4580790	.	+	.	ID=gene4015;Name=sodA;gbkey=Gene;gene=sodA;gene_biotype=protein_coding;locus_tag=YPO4061
AL590842.1	EMBL	CDS	4580167	4580790	.	+	0	ID=cds3943;Parent=gene4015;Dbxref=GOA:Q7CFQ2,InterPro:IPR001189,InterPro:IPR019831,InterPro:IPR019832,InterPro:IPR019833,UniProtKB/TrEMBL:Q7CFQ2,NCBI_GP:CAL22634.1;Name=CAL22634.1;Note=Similar to Yersinia enterocolitica superoxide dismutase [Mn] SodA SW:SODM_YEREN (P53655) (207 aa) fasta scores: E(): 0%2C 97.6%25 id in 207 aa%2C and to Escherichia coli superoxide dismutase [Mn] SodA SW:SODM_ECOLI (P00448) (205 aa) fasta scores: E(): 0%2C 85.0%25 id in 206 aa;gbkey=CDS;gene=sodA;product=superoxide dismutase [Mn];protein_id=CAL22634.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4580170	4580784	.	+	.	ID=id9781;Note=Pfam match to entry PF00081 sodfe%2C Iron/manganese superoxide dismutases (SODM)%2C score 412.10%2C E-value 5.1e-120;gbkey=misc_feature;gene=sodA;inference=protein motif:PF00081
AL590842.1	EMBL	sequence_feature	4580671	4580694	.	+	.	ID=id9782;Note=PS00088 Manganese and iron superoxide dismutases signature.;gbkey=misc_feature;gene=sodA;inference=protein motif:ProSite:PS00088
AL590842.1	EMBL	gene	4581134	4583083	.	+	.	ID=gene4016;Name=cheM;gbkey=Gene;gene=cheM;gene_biotype=protein_coding;gene_synonym=tar;locus_tag=YPO4062
AL590842.1	EMBL	CDS	4581134	4583083	.	+	0	ID=cds3944;Parent=gene4016;Dbxref=GOA:Q7CFQ1,InterPro:IPR003660,InterPro:IPR004089,InterPro:IPR004090,UniProtKB/TrEMBL:Q7CFQ1,NCBI_GP:CAL22635.1;Name=CAL22635.1;Note=Similar to the C-terminal regions of Escherichia coli methyl-accepting chemotaxis protein II Tar SW:MCP2_ECOLI (P07017) (553 aa) fasta scores: E(): 0%2C 46.8%25 id in 530 aa%2C and Salmonella typhimurium methyl-accepting chemotaxis protein II Tar SW:MCP2_SALTY (P02941) (553 aa) fasta scores: E(): 0%2C 46.3%25 id in 525 aa;gbkey=CDS;gene=cheM;product=methyl-accepting chemotaxis protein II;protein_id=CAL22635.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4581191	4581259	.	+	.	ID=id9783;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=cheM;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4582001	4582210	.	+	.	ID=id9784;Note=Pfam match to entry PF00672 DUF5%2C HAMP domain%2C score 63.90%2C E-value 3.3e-15;gbkey=misc_feature;gene=cheM;inference=protein motif:PF00672
AL590842.1	EMBL	sequence_feature	4582496	4582678	.	+	.	ID=id9785;Note=Pfam match to entry PF00015 MCPsignal%2CMethyl-accepting chemotaxis protein (MCP) signaling domain%2Cscore 133.60%2C E-value 9.1e-37;gbkey=misc_feature;gene=cheM;inference=protein motif:PF00015
AL590842.1	EMBL	gene	4583273	4583605	.	+	.	ID=gene4017;Name=YPO4063;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4063
AL590842.1	EMBL	CDS	4583273	4583605	.	+	0	ID=cds3945;Parent=gene4017;Dbxref=UniProtKB/TrEMBL:Q7CFQ0,NCBI_GP:CAL22636.1;Name=CAL22636.1;Note=No significant database matches;gbkey=CDS;product=putative membrane protein;protein_id=CAL22636.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4583330	4583383	.	+	.	ID=id9786;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4584161	4584613	.	+	.	ID=gene4018;Name=YPO4064;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4064
AL590842.1	EMBL	CDS	4584161	4584613	.	+	0	ID=cds3946;Parent=gene4018;Dbxref=InterPro:IPR019545,UniProtKB/TrEMBL:Q0W9W7,NCBI_GP:CAL22637.1;Name=CAL22637.1;Note=Similar to C-terminal regions of Streptomyces coelicolor putative secreted protein SCJ1.02C TR:Q9RJ12 (EMBL:AL109962) (195 aa) fasta scores: E(): 0.00066%2C 25.6%25 id in 133 aa%2C and Actinosynnema pretiosum hypothetical protein TR:O69206 (EMBL:U33059) (190 aa) fasta scores: E(): 2.1%2C 27.0%25 id in 148 aa;gbkey=CDS;inference=similar to sequence:INSDC:U33059;product=hypothetical protein;protein_id=CAL22637.1;transl_table=11
AL590842.1	EMBL	gene	4584782	4585138	.	-	.	ID=gene4019;Name=YPO4065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4065
AL590842.1	EMBL	CDS	4584782	4585138	.	-	0	ID=cds3947;Parent=gene4019;Dbxref=InterPro:IPR021230,UniProtKB/TrEMBL:Q7CFP9,NCBI_GP:CAL22638.1;Name=CAL22638.1;Note=Similar to Escherichia coli hypothetical protein YibL SW:YIBL_ECOLI (P36564) (120 aa) fasta scores: E(): 2.9e-21%2C 61.2%25 id in 116 aa%2C and to the C-terminus of Vibrio cholerae hypothetical protein VCA0010 TR:Q9KNF4 (EMBL:AE004344) (145 aa) fasta scores: E(): 5.7e-10%2C 33.1%25 id in 118 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004344;product=conserved hypothetical protein;protein_id=CAL22638.1;transl_table=11
AL590842.1	EMBL	gene	4585387	4585941	.	-	.	ID=gene4020;Name=mtlR;gbkey=Gene;gene=mtlR;gene_biotype=protein_coding;locus_tag=YPO4066
AL590842.1	EMBL	CDS	4585387	4585941	.	-	0	ID=cds3948;Parent=gene4020;Dbxref=InterPro:IPR007761,UniProtKB/TrEMBL:Q7CFP8,NCBI_GP:CAL22639.1;Name=CAL22639.1;Note=Similar to C-terminal regions of Escherichia coli mannitol operon repressor MtlR SW:MTLR_ECOLI (P36563) (195 aa) fasta scores: E(): 0%2C 77.5%25 id in 173 aa%2C and Klebsiella pneumoniae Mtl operon repressor MtlR TR:Q9XBM5 (EMBL:AF166095) (198 aa) fasta scores: E(): 0%2C 75.7%25 id in 181 aa. CDS appears to be truncated at the N-terminus in comparison to other orthologues. Effect on function not known;gbkey=CDS;gene=mtlR;inference=similar to sequence:INSDC:AF166095;product=mannitol operon repressor;protein_id=CAL22639.1;transl_table=11
AL590842.1	EMBL	gene	4586148	4587311	.	-	.	ID=gene4021;Name=mtlD;gbkey=Gene;gene=mtlD;gene_biotype=protein_coding;locus_tag=YPO4067
AL590842.1	EMBL	CDS	4586148	4587311	.	-	0	ID=cds3949;Parent=gene4021;Dbxref=GOA:Q8Z9X0,InterPro:IPR000669,InterPro:IPR008927,InterPro:IPR013118,InterPro:IPR013131,InterPro:IPR013328,InterPro:IPR016040,InterPro:IPR023027,InterPro:IPR023028,NCBI_GP:CAL22640.1;Name=CAL22640.1;Note=Similar to Klebsiella pneumoniae mannitol-1-phosphate 5-dehydrogenase MtlD SW:MTLD_KLEPN (Q9XBM6) (382 aa) fasta scores: E(): 0%2C 76.6%25 id in 380 aa%2Cand to Escherichia coli mannitol-1-phosphate 5-dehydrogenase MtlD SW:MTLD_ECOLI (P09424) (382 aa) fasta scores: E(): 0%2C 75.7%25 id in 382 aa;gbkey=CDS;gene=mtlD;product=mannitol-1-phosphate 5-dehydrogenase;protein_id=CAL22640.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4586235	4587311	.	-	.	ID=id9787;Note=Pfam match to entry PF01232 Mannitol_dh%2C Mannitol dehydrogenase%2C score 524.80%2C E-value 6e-154;gbkey=misc_feature;gene=mtlD;inference=protein motif:PF01232
AL590842.1	EMBL	sequence_feature	4586826	4586864	.	-	.	ID=id9788;Note=PS00974 Mannitol dehydrogenases signature.;gbkey=misc_feature;gene=mtlD;inference=protein motif:ProSite:PS00974
AL590842.1	EMBL	gene	4587448	4589379	.	-	.	ID=gene4022;Name=mtlA;gbkey=Gene;gene=mtlA;gene_biotype=protein_coding;locus_tag=YPO4068
AL590842.1	EMBL	CDS	4587448	4589379	.	-	0	ID=cds3950;Parent=gene4022;Dbxref=GOA:Q7CFP7,InterPro:IPR002178,InterPro:IPR003352,InterPro:IPR003501,InterPro:IPR004718,InterPro:IPR013011,InterPro:IPR013014,InterPro:IPR016152,InterPro:IPR029503,UniProtKB/TrEMBL:Q7CFP7,NCBI_GP:CAL22641.1;Name=CAL22641.1;Note=Similar to Escherichia coli PTS system%2Cmannitol-specific IIABC component MtlA SW:PTMA_ECOLI (P00550) (637 aa) fasta scores: E(): 0%2C 81.7%25 id in 638 aa%2Cand to Klebsiella pneumoniae PTS system%2C mannitol-specific IIABC component MtlA SW:PTMA_KLEPN (Q9XBM7) (635 aa) fasta scores: E(): 0%2C 81.1%25 id in 635 aa;gbkey=CDS;gene=mtlA;inference=protein motif:TMHMM:2.0;product=PTS system%2C mannitol-specific IIABC component;protein_id=CAL22641.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4587646	4587831	.	-	.	ID=id9789;Note=Pfam match to entry PF00359 PTS_EIIA_2%2Cphosphoenolpyruvate-dependent sugar phosphotransferase system%2C EIIA 2%2C score 116.20%2C E-value 2.4e-31;gbkey=misc_feature;gene=mtlA;inference=protein motif:PF00359
AL590842.1	EMBL	sequence_feature	4587703	4587753	.	-	.	ID=id9790;Note=PS00372 PTS EIIA domains phosphorylation site signature 2.;gbkey=misc_feature;gene=mtlA;inference=protein motif:ProSite:PS00372
AL590842.1	EMBL	sequence_feature	4588375	4588440	.	-	.	ID=id9791;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=mtlA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4588504	4588569	.	-	.	ID=id9792;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=mtlA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4588585	4588650	.	-	.	ID=id9793;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=mtlA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4588672	4588737	.	-	.	ID=id9794;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=mtlA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4588798	4588863	.	-	.	ID=id9795;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=mtlA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4588903	4588968	.	-	.	ID=id9796;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=mtlA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4589050	4589115	.	-	.	ID=id9797;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=mtlA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4589155	4589220	.	-	.	ID=id9798;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=mtlA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4589251	4589316	.	-	.	ID=id9799;Note=one of 9 probable transmembrane helices predicted;gbkey=misc_feature;gene=mtlA;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4589794	4589859	.	-	.	ID=id9800;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4590029	4590754	.	-	.	ID=gene4023;Name=yiaF;gbkey=Gene;gene=yiaF;gene_biotype=protein_coding;locus_tag=YPO4070
AL590842.1	EMBL	CDS	4590029	4590754	.	-	0	ID=cds3951;Parent=gene4023;Dbxref=InterPro:IPR021413,UniProtKB/TrEMBL:Q7CFP6,NCBI_GP:CAL22642.1;Name=CAL22642.1;Note=Similar to the C-terminus of Escherichia coli hypothetical protein YiaF SW:YIAF_ECOLI (P37667) (276 aa) fasta scores: E(): 0%2C 50.4%25 id in 228 aa;gbkey=CDS;gene=yiaF;product=putative exported protein;protein_id=CAL22642.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4590659	4590709	.	-	.	ID=id9801;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=yiaF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4591221	4593290	.	-	.	ID=gene4024;Name=glyS;gbkey=Gene;gene=glyS;gene_biotype=protein_coding;locus_tag=YPO4071
AL590842.1	EMBL	CDS	4591221	4593290	.	-	0	ID=cds3952;Parent=gene4024;Dbxref=GOA:Q8Z9W7,InterPro:IPR006194,InterPro:IPR008909,InterPro:IPR009080,InterPro:IPR015944,NCBI_GP:CAL22643.1;Name=CAL22643.1;Note=Similar to Escherichia coli glycyl-tRNA synthetase beta chain subunit GlyS SW:SYGB_ECOLI (P00961) (688 aa) fasta scores: E(): 0%2C 85.6%25 id in 688 aa%2C and to Haemophilus influenzae glycyl-tRNA synthetase beta chain subunit GlyS SW:SYGB_HAEIN (P43822) (688 aa) fasta scores: E(): 0%2C 68.9%25 id in 689 aa;gbkey=CDS;gene=glyS;product=glycyl-tRNA synthetase beta subunit;protein_id=CAL22643.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4591227	4593275	.	-	.	ID=id9802;Note=Pfam match to entry PF02092 tRNA_synt_2f%2CGlycyl-tRNA synthetase beta subunit%2C score 1321.20%2C E-value 0;gbkey=misc_feature;gene=glyS;inference=protein motif:PF02092
AL590842.1	EMBL	gene	4593300	4594214	.	-	.	ID=gene4025;Name=glyQ;gbkey=Gene;gene=glyQ;gene_biotype=protein_coding;locus_tag=YPO4072
AL590842.1	EMBL	CDS	4593300	4594214	.	-	0	ID=cds3953;Parent=gene4025;Dbxref=GOA:Q8Z9W6,InterPro:IPR002310,InterPro:IPR006194,NCBI_GP:CAL22644.1;Name=CAL22644.1;Note=Similar to Escherichia coli glycyl-tRNA synthetase alpha subunit GlyQ SW:SYGA_ECOLI (P00960) (303 aa) fasta scores: E(): 0%2C 93.7%25 id in 303 aa%2C and to Vibrio cholerae glycyl-tRNA synthetase alpha subunit GlyQ TR:Q9KVW7 (EMBL:AE004094) (330 aa) fasta scores: E(): 0%2C 88.8%25 id in 303 aa;gbkey=CDS;gene=glyQ;inference=similar to sequence:INSDC:AE004094;product=glycyl-tRNA synthetase alpha subunit;protein_id=CAL22644.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4593321	4594190	.	-	.	ID=id9803;Note=Pfam match to entry PF02091 tRNA_synt_2e%2CGlycyl-tRNA synthetase alpha subunit%2C score 819.70%2C E-value 1e-242;gbkey=misc_feature;gene=glyQ;inference=protein motif:PF02091
AL590842.1	EMBL	sequence_feature	4593696	4593725	.	-	.	ID=id9804;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.;gbkey=misc_feature;gene=glyQ;inference=protein motif:ProSite:PS00339
AL590842.1	EMBL	gene	4594542	4595114	.	+	.	ID=gene4026;Name=tag;gbkey=Gene;gene=tag;gene_biotype=protein_coding;locus_tag=YPO4074
AL590842.1	EMBL	CDS	4594542	4595114	.	+	0	ID=cds3954;Parent=gene4026;Dbxref=GOA:Q74PD3,InterPro:IPR004597,InterPro:IPR005019,InterPro:IPR011257,UniProtKB/TrEMBL:Q74PD3,NCBI_GP:CAL22645.1;Name=CAL22645.1;Note=Similar to Escherichia coli DNA-3-methyladenine glycosylase I Tag SW:3MG1_ECOLI (P05100) (187 aa) fasta scores: E(): 0%2C 69.7%25 id in 185 aa%2C and to Haemophilus influenzae DNA-3-methyladenine glycosylase Tag SW:3MGA_HAEIN (P44321) (185 aa) fasta scores: E(): 0%2C 61.5%25 id in 179 aa;gbkey=CDS;gene=tag;product=DNA-3-methyladenine glycosylase;protein_id=CAL22645.1;transl_table=11
AL590842.1	EMBL	gene	4595111	4595566	.	+	.	ID=gene4027;Name=YPO4075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4075
AL590842.1	EMBL	CDS	4595111	4595566	.	+	0	ID=cds3955;Parent=gene4027;Dbxref=GOA:Q7CFP5,InterPro:IPR000182,InterPro:IPR016181,UniProtKB/TrEMBL:Q7CFP5,NCBI_GP:CAL22646.1;Name=CAL22646.1;Note=Similar to Escherichia coli hypothetical protein YiaC SW:YIAC_ECOLI (P37664) (146 aa) fasta scores: E(): 9.9e-23%2C 43.2%25 id in 146 aa%2C and to Pseudomonas aeruginosa probable acetyltransferase PA0249 TR:AAG03638 (EMBL:AE004463) (148 aa) fasta scores: E(): 7.7e-13%2C 36.9%25 id in 130 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004463;product=putative acetyltransferase;protein_id=CAL22646.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4595291	4595491	.	+	.	ID=id9805;Note=Pfam match to entry PF00583 Acetyltransf%2CAcetyltransferase (GNAT) family%2C score 68.80%2C E-value 1.2e-16;gbkey=misc_feature;inference=protein motif:PF00583
AL590842.1	EMBL	gene	4595924	4596583	.	+	.	ID=gene4028;Name=yiaD;gbkey=Gene;gene=yiaD;gene_biotype=protein_coding;locus_tag=YPO4076
AL590842.1	EMBL	CDS	4595924	4596583	.	+	0	ID=cds3956;Parent=gene4028;Dbxref=GOA:Q7CFP4,InterPro:IPR006664,InterPro:IPR006665,UniProtKB/TrEMBL:Q7CFP4,NCBI_GP:CAL22647.1;Name=CAL22647.1;Note=Similar to Escherichia coli hypothetical lipoprotein YiaD SW:YIAD_ECOLI (P37665) (219 aa) fasta scores: E(): 0%2C77.6%25 id in 219 aa%2C and to Shewanella violacea hypothetical protein TR:Q9S0K6 (EMBL:AB033988) (220 aa) fasta scores: E(): 0%2C 58.2%25 id in 220 aa;gbkey=CDS;gene=yiaD;inference=similar to sequence:INSDC:AB033988;product=putative lipoprotein;protein_id=CAL22647.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4595936	4596004	.	+	.	ID=id9806;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=yiaD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4595954	4595986	.	+	.	ID=id9807;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=yiaD;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	4596005	4596028	.	+	.	ID=id9808;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=yiaD;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	sequence_feature	4596032	4596088	.	+	.	ID=id9809;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=yiaD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4596107	4596166	.	+	.	ID=id9810;Note=one of 3 probable transmembrane helices predicted;gbkey=misc_feature;gene=yiaD;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4596266	4596553	.	+	.	ID=id9811;Note=Pfam match to entry PF00691 OmpA%2C OmpA family%2C score 139.00%2C E-value 8.6e-38;gbkey=misc_feature;gene=yiaD;inference=protein motif:PF00691
AL590842.1	EMBL	gene	4596714	4597358	.	-	.	ID=gene4029;Name=YPO4077;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4077
AL590842.1	EMBL	CDS	4596714	4597358	.	-	0	ID=cds3957;Parent=gene4029;Dbxref=InterPro:IPR011991,UniProtKB/TrEMBL:Q7CFP3,NCBI_GP:CAL22648.1;Name=CAL22648.1;Note=Similar to Vibrio cholerae hypothetical protein VC2666 TR:Q9KNR5 (EMBL:AE004332) (205 aa) fasta scores: E(): 1.1e-24%2C 40.2%25 id in 199 aa%2C and to Deinococcus radiodurans conserved hypothetical protein DR0999 TR:Q9RVM8 (EMBL:AE001952) (225 aa) fasta scores: E(): 8.8e-14%2C 30.0%25 id in 210 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004332;product=conserved hypothetical protein;protein_id=CAL22648.1;transl_table=11
AL590842.1	EMBL	gene	4597877	4598857	.	+	.	ID=gene4030;Name=YPO4078;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4078
AL590842.1	EMBL	CDS	4597877	4598857	.	+	0	ID=cds3958;Parent=gene4030;Dbxref=GOA:Q0W9V5,InterPro:IPR006139,InterPro:IPR006140,InterPro:IPR016040,InterPro:IPR023756,InterPro:IPR029752,InterPro:IPR029753,NCBI_GP:CAL22649.1;Name=CAL22649.1;Note=Similar to Escherichia coli probable 2-hydroxyacid dehydrogenase YiaE SW:YIAE_ECOLI (P37666) (324 aa) fasta scores: E(): 0%2C 71.1%25 id in 322 aa%2C and to Bacillus subtilis hypothetical protein YvcT TR:O32264 (EMBL:Z99121) (325 aa) fasta scores: E(): 0%2C 46.4%25 id in 321 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z99121;product=putative D-isomer specific 2-hydroxyacid dehydrogenase;protein_id=CAL22649.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4598102	4598731	.	+	.	ID=id9812;Note=Pfam match to entry PF00389 2-Hacid_DH%2C D-isomer specific 2-hydroxyacid dehydrogenases%2C score 329.90%2CE-value 8.5e-135;gbkey=misc_feature;inference=protein motif:PF00389
AL590842.1	EMBL	sequence_feature	4598318	4598404	.	+	.	ID=id9813;Note=PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS00065
AL590842.1	EMBL	sequence_feature	4598552	4598602	.	+	.	ID=id9814;Note=PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3.;gbkey=misc_feature;inference=protein motif:ProSite:PS00671
AL590842.1	EMBL	gene	4599146	4601209	.	+	.	ID=gene4031;Name=malS;gbkey=Gene;gene=malS;gene_biotype=protein_coding;locus_tag=YPO4080
AL590842.1	EMBL	CDS	4599146	4601209	.	+	0	ID=cds3959;Parent=gene4031;Dbxref=GOA:Q7CFP2,InterPro:IPR006047,InterPro:IPR006589,InterPro:IPR013781,InterPro:IPR014635,InterPro:IPR015902,InterPro:IPR017853,UniProtKB/TrEMBL:Q7CFP2,NCBI_GP:CAL22650.1;Name=CAL22650.1;Note=Similar to Escherichia coli alpha-amylase protein MalS SW:AMY1_ECOLI (P25718) (676 aa) fasta scores: E(): 0%2C70.1%25 id in 680 aa%2C and to Klebsiella pneumoniae maltohexaose-producing amylase TR:Q9RHR1 (EMBL:AB026834) (677 aa) fasta scores: E(): 0%2C 68.9%25 id in 687 aa;gbkey=CDS;gene=malS;inference=similar to sequence:INSDC:AB026834;product=alpha-amylase protein;protein_id=CAL22650.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4599719	4601155	.	+	.	ID=id9815;Note=Pfam match to entry PF00128 alpha-amylase%2C Alpha amylase%2C score 274.50%2C E-value 1.4e-78;gbkey=misc_feature;gene=malS;inference=protein motif:PF00128
AL590842.1	EMBL	gene	4601624	4602067	.	+	.	ID=gene4032;Name=YPO4081;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4081
AL590842.1	EMBL	CDS	4601624	4602067	.	+	0	ID=cds3960;Parent=gene4032;Dbxref=UniProtKB/TrEMBL:Q7CFP1,NCBI_GP:CAL22651.1;Name=CAL22651.1;Note=Poor database matches;gbkey=CDS;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL22651.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4601642	4601710	.	+	.	ID=id9816;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4601768	4601827	.	+	.	ID=id9817;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4601861	4601929	.	+	.	ID=id9818;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4601957	4602025	.	+	.	ID=id9819;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4602522	4603787	.	+	.	ID=gene4033;Name=avtA;gbkey=Gene;gene=avtA;gene_biotype=protein_coding;locus_tag=YPO4082
AL590842.1	EMBL	CDS	4602522	4603787	.	+	0	ID=cds3961;Parent=gene4033;Dbxref=GOA:Q0W9V2,InterPro:IPR004839,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q0W9V2,NCBI_GP:CAL22652.1;Name=CAL22652.1;Note=Similar to Escherichia coli valine--pyruvate aminotransferase AvtA SW:AVTA_ECOLI (P09053) (417 aa) fasta scores: E(): 0%2C 79.1%25 id in 416 aa%2C and to Vibrio cholerae valine-pyruvate aminotransferase VC0019 TR:Q9KVW9 (EMBL:AE004094) (418 aa) fasta scores: E(): 0%2C 63.2%25 id in 416 aa;gbkey=CDS;gene=avtA;inference=similar to sequence:INSDC:AE004094;product=valine--pyruvate aminotransferase;protein_id=CAL22652.1;transl_table=11
AL590842.1	EMBL	gene	4603900	4605558	.	-	.	ID=gene4034;Name=yidE;gbkey=Gene;gene=yidE;gene_biotype=protein_coding;locus_tag=YPO4083
AL590842.1	EMBL	CDS	4603900	4605558	.	-	0	ID=cds3962;Parent=gene4034;Dbxref=GOA:Q8Z9V7,InterPro:IPR006037,InterPro:IPR006512,InterPro:IPR023018,NCBI_GP:CAL22653.1;Name=CAL22653.1;Note=Similar to Escherichia coli hypothetical protein YidE SW:YIDE_ECOLI (P29211) (553 aa) fasta scores: E(): 0%2C75.0%25 id in 552 aa%2C and to Haemophilus influenzae hypothetical protein HI0035 SW:YIDE_HAEIN (P44472) (551 aa) fasta scores: E(): 0%2C 65.6%25 id in 550 aa;gbkey=CDS;gene=yidE;inference=protein motif:TMHMM:2.0;product=putative membrane protein;protein_id=CAL22653.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4603909	4603974	.	-	.	ID=id9820;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yidE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4604020	4604082	.	-	.	ID=id9821;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yidE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4604104	4604169	.	-	.	ID=id9822;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yidE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4604215	4604265	.	-	.	ID=id9823;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yidE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4604302	4604367	.	-	.	ID=id9824;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yidE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4604380	4604445	.	-	.	ID=id9825;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yidE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4604470	4604724	.	-	.	ID=id9826;Note=Pfam match to entry PF02080 TrkA%2C Potassium channel%2Cscore 51.10%2C E-value 2.5e-11;gbkey=misc_feature;gene=yidE;inference=protein motif:PF02080
AL590842.1	EMBL	sequence_feature	4605013	4605078	.	-	.	ID=id9827;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yidE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4605223	4605288	.	-	.	ID=id9828;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yidE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4605310	4605375	.	-	.	ID=id9829;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yidE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4605415	4605480	.	-	.	ID=id9830;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yidE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4605496	4605546	.	-	.	ID=id9831;Note=one of 11 probable transmembrane helices predicted;gbkey=misc_feature;gene=yidE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4605931	4606395	.	-	.	ID=gene4035;Name=hslS;gbkey=Gene;gene=hslS;gene_biotype=protein_coding;gene_synonym=htpE,ibpB;locus_tag=YPO4084
AL590842.1	EMBL	CDS	4605931	4606395	.	-	0	ID=cds3963;Parent=gene4035;Dbxref=GOA:Q8Z9V6,InterPro:IPR002068,InterPro:IPR008978,InterPro:IPR022848,NCBI_GP:CAL22654.1;Name=CAL22654.1;Note=Similar to Escherichia coli heat shock protein B IbpB SW:IBPB_ECOLI (P29210) (142 aa) fasta scores: E(): 0%2C59.9%25 id in 147 aa%2C and to Escherichia coli heat shock protein B IbpA SW:IBPA_ECOLI (P29209) (137 aa) fasta scores: E(): 3.1e-22%2C 47.8%25 id in 136 aa;gbkey=CDS;gene=hslS;product=heat shock protein;protein_id=CAL22654.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4605991	4606311	.	-	.	ID=id9832;Note=Pfam match to entry PF00011 HSP20%2C Hsp20/alpha crystallin family%2C score 77.20%2C E-value 3.7e-20;gbkey=misc_feature;gene=hslS;inference=protein motif:PF00011
AL590842.1	EMBL	gene	4606676	4607089	.	-	.	ID=gene4036;Name=hslT;gbkey=Gene;gene=hslT;gene_biotype=protein_coding;gene_synonym=htpN,ibpA;locus_tag=YPO4085
AL590842.1	EMBL	CDS	4606676	4607089	.	-	0	ID=cds3964;Parent=gene4036;Dbxref=GOA:Q8Z9V5,InterPro:IPR002068,InterPro:IPR008978,InterPro:IPR023728,NCBI_GP:CAL22655.1;Name=CAL22655.1;Note=Similar to Escherichia coli heat shock protein A IbpA SW:IBPA_ECOLI (P29209) (137 aa) fasta scores: E(): 0%2C82.4%25 id in 136 aa%2C and to Vibrio cholerae heat shock protein A VC0018 TR:Q9KVX0 (EMBL:AE004094) (145 aa) fasta scores: E(): 4.5e-32%2C 56.9%25 id in 137 aa;gbkey=CDS;gene=hslT;inference=similar to sequence:INSDC:AE004094;product=heat shock protein;protein_id=CAL22655.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4606679	4606999	.	-	.	ID=id9833;Note=Pfam match to entry PF00011 HSP20%2C Hsp20/alpha crystallin family%2C score 90.90%2C E-value 5.5e-24;gbkey=misc_feature;gene=hslT;inference=protein motif:PF00011
AL590842.1	EMBL	gene	4607457	4607795	.	+	.	ID=gene4037;Name=YPO4086;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4086
AL590842.1	EMBL	CDS	4607457	4607795	.	+	0	ID=cds3965;Parent=gene4037;Dbxref=InterPro:IPR010780,UniProtKB/TrEMBL:Q7CFN9,NCBI_GP:CAL22656.1;Name=CAL22656.1;Note=Similar to Escherichia coli hypothetical protein Yidq or b3688 SW:YIDQ_ECOLI (P31454) (135 aa) fasta scores: E(): 8.5e-15%2C 43.3%25 id in 104 aa. CDS is truncated at the N-terminus in comparison to the E. coli protein;gbkey=CDS;product=putative lipoprotein;protein_id=CAL22656.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4607484	4607516	.	+	.	ID=id9834;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	pseudogene	4607835	4608450	.	-	.	ID=gene4038;Name=YPO4087;gbkey=Gene;gene_biotype=pseudogene;locus_tag=YPO4087;pseudo=true
AL590842.1	EMBL	CDS	4607835	4608450	.	-	0	ID=cds3966;Parent=gene4038;Note=N-terminus is similar to the N-terminal region of Escherichia coli hypothetical protein YidR SW:YIDR_ECOLI (P31455) (416 aa) fasta scores: E(): 7.5e-19%2C 62.6%25 id in 91 aa. C-terminus is similar to C-terminal region of Escherichia coli hypothetical protein YidR SW:YIDR_ECOLI (P31455) (416 aa) fasta scores: E(): 2.2e-16%2C 51.6%25 id in 95 aa. Deletion and frameshift occur after codon 81. The sequence has been checked and is believed to be correct;gbkey=CDS;product=conserved hypothetical protein (pseudogene);pseudo=true;transl_table=11
AL590842.1	EMBL	gene	4608658	4609620	.	+	.	ID=gene4039;Name=YPO4089;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4089
AL590842.1	EMBL	CDS	4608658	4609620	.	+	0	ID=cds3967;Parent=gene4039;Dbxref=GOA:Q0W9U7,InterPro:IPR000634,InterPro:IPR001926,UniProtKB/TrEMBL:Q0W9U7,NCBI_GP:CAL22658.1;Name=CAL22658.1;Note=Similar to Escherichia coli threonine dehydratase catabolic TdcB SW:THD2_ECOLI (P05792) (329 aa) fasta scores: E(): 0%2C 36.9%25 id in 317 aa%2C and to the N-terminal region of Thermotoga maritima threonine dehydratase catabolic TM0356 TR:Q9WYJ1 (EMBL:AE001716) (401 aa) fasta scores: E(): 0%2C 44.2%25 id in 310 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE001716;product=pyridoxal-phosphate dependent enzyme;protein_id=CAL22658.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4608700	4609575	.	+	.	ID=id9835;Note=Pfam match to entry PF00291 PALP%2CPyridoxal-phosphate dependent enzyme%2C score 245.10%2C E-value 9.6e-70;gbkey=misc_feature;inference=protein motif:PF00291
AL590842.1	EMBL	sequence_feature	4608784	4608825	.	+	.	ID=id9836;Note=PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site.;gbkey=misc_feature;inference=protein motif:ProSite:PS00165
AL590842.1	EMBL	gene	4609614	4610567	.	+	.	ID=gene4040;Name=YPO4090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4090
AL590842.1	EMBL	CDS	4609614	4610567	.	+	0	ID=cds3968;Parent=gene4040;Dbxref=InterPro:IPR003462,InterPro:IPR016040,InterPro:IPR023401,UniProtKB/TrEMBL:Q7CFN8,NCBI_GP:CAL22659.1;Name=CAL22659.1;Note=Similar to Rhizobium sp hypothetical cyclodeaminase Y4tK SW:Y4TK_RHISN (P55665) (331 aa) fasta scores: E(): 0%2C36.6%25 id in 303 aa%2C and to an internal region of Brucella abortus ornithine cyclodeaminase ArcB SW:OCD_BRUAB (Q59175) (359 aa) fasta scores: E(): 8.3e-11%2C 26.1%25 id in 245 aa;gbkey=CDS;product=putative ornithine cyclodeaminase;protein_id=CAL22659.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4609626	4610564	.	+	.	ID=id9837;Note=Pfam match to entry PF02423 ODC_Mu_crystall%2C %2C score 174.50%2C E-value 1.7e-48;gbkey=misc_feature;inference=protein motif:PF02423
AL590842.1	EMBL	sequence_feature	4610709	4612170	.	+	.	ID=id9838;Note=IS1397-like insertion element: IS1661;gbkey=misc_feature
AL590842.1	EMBL	INVERTED	4610709	4610741	.	+	.	ID=id9839;Note=Inverted repeat for IS1661 insertion element;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	4610774	4611289	.	+	.	ID=gene4041;Name=YPO4091;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4091
AL590842.1	EMBL	CDS	4610774	4611289	.	+	0	ID=cds3969;Parent=gene4041;Dbxref=GOA:Q74RD6,InterPro:IPR009057,InterPro:IPR010921,InterPro:IPR011991,UniProtKB/TrEMBL:Q74RD6,NCBI_GP:CAL22660.1;Name=CAL22660.1;Note=Similar to Escherichia coli insertion element IS1397 OrfA hypothetical 20.1 kDa protein SW:YI9A_ECOLI (Q47309) (173 aa) fasta scores: E(): 2.3e-20%2C 39.6%25 id in 169 aa;gbkey=CDS;product=insertion element IS1661 DNA-binding protein;protein_id=CAL22660.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4610831	4610896	.	+	.	ID=id9840;Note=Predicted helix-turn-helix motif with score 1691 (+4.95 SD) at aa 20-41%2C sequence ATLRETARQFSVGKSPLTRWIR;gbkey=misc_feature
AL590842.1	EMBL	gene	4611343	4612128	.	+	.	ID=gene4042;Name=YPO4092;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4092
AL590842.1	EMBL	CDS	4611343	4612128	.	+	0	ID=cds3970;Parent=gene4042;Dbxref=GOA:Q7CKI6,InterPro:IPR001584,InterPro:IPR012337,InterPro:IPR025948,UniProtKB/TrEMBL:Q7CKI6,NCBI_GP:CAL22661.1;Name=CAL22661.1;Note=Similar to Escherichia coli insertion sequence IS1397 transposase%2C OrfB TR:Q47310 (EMBL:X92970) (240 aa) fasta scores: E(): 0%2C 53.0%25 id in 234 aa;gbkey=CDS;inference=similar to sequence:INSDC:X92970;product=transposase for insertion sequence IS1661;protein_id=CAL22661.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4611631	4612110	.	+	.	ID=id9841;Note=Pfam match to entry PF00665 rve%2C Integrase core domain%2C score 141.50%2C E-value 9.6e-40;gbkey=misc_feature;inference=protein motif:PF00665
AL590842.1	EMBL	INVERTED	4612137	4612170	.	-	.	ID=id9842;Note=Inverted repeat for IS1661 insertion element;gbkey=repeat_region;rpt_type=INVERTED
AL590842.1	EMBL	gene	4612519	4613328	.	-	.	ID=gene4043;Name=YPO4093;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4093
AL590842.1	EMBL	CDS	4612519	4613328	.	-	0	ID=cds3971;Parent=gene4043;Dbxref=GOA:Q0W9U3,InterPro:IPR000150,InterPro:IPR006379,InterPro:IPR023214,UniProtKB/TrEMBL:Q0W9U3,NCBI_GP:CAL22662.1;Name=CAL22662.1;Note=Similar to Escherichia coli hypothetical protein YidA SW:YIDA_ECOLI (P09997) (270 aa) fasta scores: E(): 0%2C63.8%25 id in 268 aa%2C and to Bacillus subtilis hypothetical protein YxeH SW:YXEH_BACSU (P54947) (270 aa) fasta scores: E(): 0%2C 49.4%25 id in 265 aa;gbkey=CDS;product=putative haloacid dehalogenase-like hydrolase;protein_id=CAL22662.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4612558	4613316	.	-	.	ID=id9843;Note=Pfam match to entry PF00592 DUF3%2C Cof family DUF3%2Cscore 302.20%2C E-value 6.3e-87;gbkey=misc_feature;inference=protein motif:PF00592
AL590842.1	EMBL	sequence_feature	4613281	4613316	.	-	.	ID=id9844;Note=PS01228 Hypothetical cof family signature 1.;gbkey=misc_feature;inference=protein motif:ProSite:PS01228
AL590842.1	EMBL	gene	4613544	4615958	.	-	.	ID=gene4044;Name=acrB;gbkey=Gene;gene=acrB;gene_biotype=protein_coding;gene_synonym=gyrB,himB,hisU,nalC,parA,pcbA;locus_tag=YPO4094
AL590842.1	EMBL	CDS	4613544	4615958	.	-	0	ID=cds3972;Parent=gene4044;Dbxref=GOA:Q0W9U2,InterPro:IPR001241,InterPro:IPR002288,InterPro:IPR003594,InterPro:IPR006171,InterPro:IPR011557,InterPro:IPR013506,InterPro:IPR013759,InterPro:IPR013760,InterPro:IPR014721,InterPro:IPR018522,InterPro:IPR020568,UniProtKB/TrEMBL:Q0W9U2,NCBI_GP:CAL22663.1;Name=CAL22663.1;Note=Similar to Escherichia coli DNA gyrase subunit B GyrB SW:GYRB_ECOLI (P06982) (803 aa) fasta scores: E(): 0%2C86.9%25 id in 803 aa%2C and to Salmonella typhimurium DNA gyrase subunit B gyrB SW:GYRB_SALTY (Q60008) (803 aa) fasta scores: E(): 0%2C 86.3%25 id in 803 aa;gbkey=CDS;gene=acrB;product=DNA gyrase subunit B;protein_id=CAL22663.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4613580	4613780	.	-	.	ID=id9845;Note=Pfam match to entry PF00986 DNA_gyraseB_C%2C DNA gyrase B subunit%2C carboxyl terminus%2C score 161.00%2C E-value 2.1e-44;gbkey=misc_feature;gene=acrB;inference=protein motif:PF00986
AL590842.1	EMBL	sequence_feature	4614297	4615931	.	-	.	ID=id9846;Note=Pfam match to entry PF00204 DNA_topoisoII%2C DNA topoisomerase II (N-terminal region)%2C score 1072.30%2CE-value 0;gbkey=misc_feature;gene=acrB;inference=protein motif:PF00204
AL590842.1	EMBL	sequence_feature	4614669	4614695	.	-	.	ID=id9847;Note=PS00177 DNA topoisomerase II signature.;gbkey=misc_feature;gene=acrB;inference=protein motif:ProSite:PS00177
AL590842.1	EMBL	gene	4615978	4617063	.	-	.	ID=gene4045;Name=recF;gbkey=Gene;gene=recF;gene_biotype=protein_coding;gene_synonym=uvrF;locus_tag=YPO4095
AL590842.1	EMBL	CDS	4615978	4617063	.	-	0	ID=cds3973;Parent=gene4045;Dbxref=GOA:Q8Z9U9,InterPro:IPR001238,InterPro:IPR003395,InterPro:IPR018078,InterPro:IPR027417,NCBI_GP:CAL22664.1;Name=CAL22664.1;Note=Similar to Escherichia coli DNA metabolism protein RecF SW:RECF_ECOLI (P03016) (356 aa) fasta scores: E(): 0%2C79.7%25 id in 354 aa%2C and to Salmonella typhimurium DNA metabolism protein RecF SW:RECF_SALTY (P24900) (354 aa) fasta scores: E(): 0%2C 77.1%25 id in 354 aa;gbkey=CDS;gene=recF;product=DNA metabolism protein;protein_id=CAL22664.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4615996	4617057	.	-	.	ID=id9848;Note=Pfam match to entry PF00470 RecF%2C RecF protein%2Cscore 875.20%2C E-value 2.1e-259;gbkey=misc_feature;gene=recF;inference=protein motif:PF00470
AL590842.1	EMBL	sequence_feature	4616116	4616169	.	-	.	ID=id9849;Note=PS00618 RecF protein signature 2.;gbkey=misc_feature;gene=recF;inference=protein motif:ProSite:PS00618
AL590842.1	EMBL	sequence_feature	4616653	4616730	.	-	.	ID=id9850;Note=PS00617 RecF protein signature 1.;gbkey=misc_feature;gene=recF;inference=protein motif:ProSite:PS00617
AL590842.1	EMBL	sequence_feature	4616953	4616976	.	-	.	ID=id9851;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=recF;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4617236	4618336	.	-	.	ID=gene4046;Name=dnaN;gbkey=Gene;gene=dnaN;gene_biotype=protein_coding;locus_tag=YPO4096
AL590842.1	EMBL	CDS	4617236	4618336	.	-	0	ID=cds3974;Parent=gene4046;Dbxref=GOA:Q7CFN6,InterPro:IPR001001,InterPro:IPR022634,InterPro:IPR022635,InterPro:IPR022637,UniProtKB/TrEMBL:Q7CFN6,NCBI_GP:CAL22665.1;Name=CAL22665.1;Note=Similar to Escherichia coli DNA polymerase III%2C beta subunit protein DnaN SW:DP3B_ECOLI (P00583) (366 aa) fasta scores: E(): 0%2C 90.2%25 id in 366 aa%2C and to Salmonella typhimurium DNA polymerase III%2C beta subunit protein DnaN SW:DP3B_SALTY (P26464) (366 aa) fasta scores: E(): 0%2C 89.6%25 id in 366 aa;gbkey=CDS;gene=dnaN;product=DNA polymerase III%2C beta subunit protein;protein_id=CAL22665.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4617251	4618336	.	-	.	ID=id9852;Note=Pfam match to entry PF00712 DNA_pol3_beta%2C DNA polymerase III beta subunit%2C score 677.50%2C E-value 6.7e-200;gbkey=misc_feature;gene=dnaN;inference=protein motif:PF00712
AL590842.1	EMBL	gene	4618341	4619729	.	-	.	ID=gene4047;Name=dnaA;gbkey=Gene;gene=dnaA;gene_biotype=protein_coding;locus_tag=YPO4097
AL590842.1	EMBL	CDS	4618341	4619729	.	-	0	ID=cds3975;Parent=gene4047;Dbxref=GOA:Q8Z9U7,InterPro:IPR001957,InterPro:IPR003593,InterPro:IPR010921,InterPro:IPR013159,InterPro:IPR013317,InterPro:IPR018312,InterPro:IPR020591,InterPro:IPR024633,InterPro:IPR027417,NCBI_GP:CAL22666.1;Name=CAL22666.1;Note=Similar to Escherichia coli chromosomal replication initiator protein DnaA SW:DNAA_ECOLI (P03004) (467 aa) fasta scores: E(): 0%2C 91.7%25 id in 468 aa%2C and to Serratia marcescens chromosomal replication initiator protein DnaA SW:DNAA_SERMA (P29440) (464 aa) fasta scores: E(): 0%2C 95.7%25 id in 464 aa;gbkey=CDS;gene=dnaA;product=chromosomal replication initiator protein;protein_id=CAL22666.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4618413	4619351	.	-	.	ID=id9853;Note=Pfam match to entry PF00308 bac_dnaA%2C Bacterial dnaA protein%2C score 732.50%2C E-value 1.2e-246;gbkey=misc_feature;gene=dnaA;inference=protein motif:PF00308
AL590842.1	EMBL	sequence_feature	4618413	4618472	.	-	.	ID=id9854;Note=PS01008 DnaA protein signature.;gbkey=misc_feature;gene=dnaA;inference=protein motif:ProSite:PS01008
AL590842.1	EMBL	sequence_feature	4619208	4619231	.	-	.	ID=id9855;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=dnaA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4619853	4620062	.	+	.	ID=gene4048;Name=YPO4098;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4098
AL590842.1	EMBL	CDS	4619853	4620062	.	+	0	ID=cds3976;Parent=gene4048;Dbxref=UniProtKB/TrEMBL:Q74PB5,NCBI_GP:CAL22667.1;Name=CAL22667.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22667.1;transl_table=11
AL590842.1	EMBL	gene	4620439	4620579	.	+	.	ID=gene4049;Name=rimA;gbkey=Gene;gene=rimA;gene_biotype=protein_coding;gene_synonym=rpmH,ssaF;locus_tag=YPO4100
AL590842.1	EMBL	CDS	4620439	4620579	.	+	0	ID=cds3977;Parent=gene4049;Dbxref=GOA:Q8Z9U5,InterPro:IPR000271,InterPro:IPR020939,NCBI_GP:CAL22668.1;Name=CAL22668.1;Note=Similar to Escherichia coli 50S ribosomal protein L34 RpmH SW:RL34_ECOLI (P02437) (46 aa) fasta scores: E(): 4.8e-19%2C 95.7%25 id in 46 aa%2C and to Proteus mirabilis 50S ribosomal protein L34 RpmH SW:RL34_PROMI (P22836) (47 aa) fasta scores: E(): 3.8e-18%2C 93.3%25 id in 45 aa;gbkey=CDS;gene=rimA;product=50S ribosomal protein L34;protein_id=CAL22668.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4620439	4620570	.	+	.	ID=id9856;Note=Pfam match to entry PF00468 Ribosomal_L34%2C Ribosomal protein L34%2C score 79.20%2C E-value 8.2e-22;gbkey=misc_feature;gene=rimA;inference=protein motif:PF00468
AL590842.1	EMBL	sequence_feature	4620442	4620501	.	+	.	ID=id9857;Note=PS00784 Ribosomal protein L34 signature.;gbkey=misc_feature;gene=rimA;inference=protein motif:ProSite:PS00784
AL590842.1	EMBL	gene	4620598	4620957	.	+	.	ID=gene4050;Name=rnpA;gbkey=Gene;gene=rnpA;gene_biotype=protein_coding;locus_tag=YPO4101
AL590842.1	EMBL	CDS	4620598	4620957	.	+	0	ID=cds3978;Parent=gene4050;Dbxref=GOA:Q8Z9U4,InterPro:IPR000100,InterPro:IPR014721,InterPro:IPR020539,InterPro:IPR020568,NCBI_GP:CAL22669.1;Name=CAL22669.1;Note=Similar to Escherichia coli ribonuclease P protein component RnpA SW:RNPA_ECOLI (P06277) (119 aa) fasta scores: E(): 0%2C 88.2%25 id in 119 aa%2C and to Proteus mirabilis ribonuclease P protein component RnpA SW:RNPA_PROMI (P22835) (119 aa) fasta scores: E(): 0%2C 80.7%25 id in 119 aa;gbkey=CDS;gene=rnpA;product=ribonuclease P protein;protein_id=CAL22669.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4620631	4620936	.	+	.	ID=id9858;Note=Pfam match to entry PF00825 Ribonuclease_P%2CRibonuclease P%2C score 182.20%2C E-value 8.7e-51;gbkey=misc_feature;gene=rnpA;inference=protein motif:PF00825
AL590842.1	EMBL	sequence_feature	4620763	4620807	.	+	.	ID=id9859;Note=PS00648 Bacterial ribonuclease P protein component signature.;gbkey=misc_feature;gene=rnpA;inference=protein motif:ProSite:PS00648
AL590842.1	EMBL	gene	4621181	4622821	.	+	.	ID=gene4051;Name=yidC;gbkey=Gene;gene=yidC;gene_biotype=protein_coding;locus_tag=YPO4102
AL590842.1	EMBL	CDS	4621181	4622821	.	+	0	ID=cds3979;Parent=gene4051;Dbxref=GOA:Q8Z9U3,InterPro:IPR001708,InterPro:IPR019998,InterPro:IPR028053,InterPro:IPR028055,NCBI_GP:CAL22670.1;Name=CAL22670.1;Note=Similar to Escherichia coli inner-membrane protein YidC SW:60IM_ECOLI (P25714) (548 aa) fasta scores: E(): 0%2C77.3%25 id in 547 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) inner-membrane protein BU015 SW:60IM_BUCAI (P57131) (532 aa) fasta scores: E(): 0%2C 57.8%25 id in 538 aa;gbkey=CDS;gene=yidC;inference=protein motif:TMHMM:2.0;product=probable membrane protein;protein_id=CAL22670.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4621199	4622785	.	+	.	ID=id9860;Note=Pfam match to entry PF02096 60KD_IMP%2C 60Kd inner membrane protein%2C score 1214.30%2C E-value 0;gbkey=misc_feature;gene=yidC;inference=protein motif:PF02096
AL590842.1	EMBL	sequence_feature	4621199	4621252	.	+	.	ID=id9861;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yidC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4621832	4621849	.	+	.	ID=id9862;Note=PS00496 P-II protein urydylation site.;gbkey=misc_feature;gene=yidC;inference=protein motif:ProSite:PS00496
AL590842.1	EMBL	sequence_feature	4622225	4622293	.	+	.	ID=id9863;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yidC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4622429	4622497	.	+	.	ID=id9864;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yidC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4622555	4622608	.	+	.	ID=id9865;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yidC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4622666	4622734	.	+	.	ID=id9866;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=yidC;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4622964	4624328	.	+	.	ID=gene4052;Name=thdF;gbkey=Gene;gene=thdF;gene_biotype=protein_coding;gene_synonym=trmE;locus_tag=YPO4103
AL590842.1	EMBL	CDS	4622964	4624328	.	+	0	ID=cds3980;Parent=gene4052;Dbxref=GOA:Q8Z9U2,InterPro:IPR004520,InterPro:IPR005225,InterPro:IPR006073,InterPro:IPR018948,InterPro:IPR025867,InterPro:IPR027266,InterPro:IPR027368,InterPro:IPR027417,NCBI_GP:CAL22671.1;Name=CAL22671.1;Note=Similar to Escherichia coli thiophene and furan oxidation protein ThdF SW:THDF_ECOLI (P25522) (454 aa) fasta scores: E(): 0%2C 88.8%25 id in 454 aa%2C and to Vibrio cholerae thiophene and furan oxidation protein ThdF TR:Q9KVY5 (EMBL:AE004093) (464 aa) fasta scores: E(): 0%2C74.1%25 id in 452 aa;gbkey=CDS;gene=thdF;inference=similar to sequence:INSDC:AE004093;product=putative thiophene and furan oxidation protein;protein_id=CAL22671.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4623228	4624073	.	+	.	ID=id9867;Note=Pfam match to entry PF01926 MMR_HSR1%2C GTPase of unknown function%2C score -10.00%2C E-value 4.1e-06;gbkey=misc_feature;gene=thdF;inference=protein motif:PF01926
AL590842.1	EMBL	sequence_feature	4623630	4623653	.	+	.	ID=id9868;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=thdF;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4624514	4625713	.	+	.	ID=gene4053;Name=YPO4104;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4104
AL590842.1	EMBL	CDS	4624514	4625713	.	+	0	ID=cds3981;Parent=gene4053;Dbxref=GOA:Q8Z9U1,InterPro:IPR010758,InterPro:IPR024906,InterPro:IPR024910,PDB:3ZU2,PDB:3ZU3,PDB:3ZU4,PDB:3ZU5,PDB:4BKQ,NCBI_GP:CAL22672.1;Name=CAL22672.1;Note=Similar to Pseudomonas aeruginosa hypothetical protein PA2950 TR:AAG06338 (EMBL:AE004721) (398 aa) fasta scores: E(): 0%2C 79.4%25 id in 398 aa%2C and to Xylella fastidiosa hypothetical protein XF1835 TR:Q9PCE6 (EMBL:AE004005) (424 aa) fasta scores: E(): 0%2C 57.0%25 id in 395 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004721;product=conserved hypothetical protein;protein_id=CAL22672.1;transl_table=11
AL590842.1	EMBL	gene	4626181	4626456	.	-	.	ID=gene4054;Name=YPO4105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4105
AL590842.1	EMBL	CDS	4626181	4626456	.	-	0	ID=cds3982;Parent=gene4054;Dbxref=UniProtKB/TrEMBL:Q74PB3,NCBI_GP:CAL22673.1;Name=CAL22673.1;Note=No significant database matches. Similar to C-terminal region of YPO2863 (57.0%25 identity in 86 aa overlap);gbkey=CDS;product=putative exported protein;protein_id=CAL22673.1;transl_table=11
AL590842.1	EMBL	gene	4626524	4627144	.	-	.	ID=gene4055;Name=YPO4106;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4106
AL590842.1	EMBL	CDS	4626524	4627144	.	-	0	ID=cds3983;Parent=gene4055;Dbxref=UniProtKB/TrEMBL:Q7CFN4,NCBI_GP:CAL22674.1;Name=CAL22674.1;Note=no significant database hits;gbkey=CDS;product=hypothetical protein;protein_id=CAL22674.1;transl_table=11
AL590842.1	EMBL	gene	4627689	4629017	.	-	.	ID=gene4056;Name=yieG;gbkey=Gene;gene=yieG;gene_biotype=protein_coding;locus_tag=YPO4107
AL590842.1	EMBL	CDS	4627689	4629017	.	-	0	ID=cds3984;Parent=gene4056;Dbxref=GOA:Q0W9T0,InterPro:IPR006043,InterPro:IPR026033,UniProtKB/TrEMBL:Q0W9T0,NCBI_GP:CAL22675.1;Name=CAL22675.1;Note=Similar to Escherichia coli hypothetical protein YieG SW:YIEG_ECOLI (P31466) (445 aa) fasta scores: E(): 0%2C86.8%25 id in 432 aa%2C and to Escherichia coli hypothetical protein YicO or b3664 SW:YICO_ECOLI (P31440) (470 aa) fasta scores: E(): 0%2C 76.2%25 id in 445 aa;gbkey=CDS;gene=yieG;inference=protein motif:TMHMM:2.0;product=Xanthine/uracil permeases family protein;protein_id=CAL22675.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4627698	4627748	.	-	.	ID=id9869;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yieG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4627785	4627850	.	-	.	ID=id9870;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yieG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4627806	4628939	.	-	.	ID=id9871;Note=Pfam match to entry PF00860 xan_ur_permease%2CXanthine/uracil permeases family%2C score 104.00%2C E-value 2.8e-27;gbkey=misc_feature;gene=yieG;inference=protein motif:PF00860
AL590842.1	EMBL	sequence_feature	4627896	4627961	.	-	.	ID=id9872;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yieG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4627977	4628042	.	-	.	ID=id9873;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yieG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4628073	4628138	.	-	.	ID=id9874;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yieG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4628226	4628282	.	-	.	ID=id9875;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yieG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4628343	4628408	.	-	.	ID=id9876;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yieG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4628430	4628495	.	-	.	ID=id9877;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yieG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4628541	4628597	.	-	.	ID=id9878;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yieG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4628619	4628684	.	-	.	ID=id9879;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yieG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4628700	4628765	.	-	.	ID=id9880;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yieG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4628781	4628846	.	-	.	ID=id9881;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yieG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4628862	4628927	.	-	.	ID=id9882;Note=one of 13 probable transmembrane helices predicted;gbkey=misc_feature;gene=yieG;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4629510	4630178	.	+	.	ID=gene4057;Name=YPO4108;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4108
AL590842.1	EMBL	CDS	4629510	4630178	.	+	0	ID=cds3985;Parent=gene4057;Dbxref=GOA:Q7CFN3,InterPro:IPR006439,InterPro:IPR023214,UniProtKB/TrEMBL:Q7CFN3,NCBI_GP:CAL22676.1;Name=CAL22676.1;Note=Similar to Escherichia coli hypothetical protein YieH SW:YIEH_ECOLI (P31467) (221 aa) fasta scores: E(): 0%2C62.3%25 id in 220 aa%2C and to Vibrio cholerae CbbY family protein VCA0798 TR:Q9KLE8 (EMBL:AE004407) (226 aa) fasta scores: E(): 3e-26%2C 35.1%25 id in 211 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004407;product=putative haloacid dehalogenase-like hydrolase;protein_id=CAL22676.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4629519	4630073	.	+	.	ID=id9883;Note=Pfam match to entry PF00702 Hydrolase%2C haloacid dehalogenase-like hydrolase%2C score 104.90%2C E-value 1.6e-27;gbkey=misc_feature;inference=protein motif:PF00702
AL590842.1	EMBL	gene	4630213	4630968	.	-	.	ID=gene4058;Name=YPO4109;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4109
AL590842.1	EMBL	CDS	4630213	4630968	.	-	0	ID=cds3986;Parent=gene4058;Dbxref=GOA:Q0W9S8,InterPro:IPR000515,InterPro:IPR010065,UniProtKB/TrEMBL:Q0W9S8,NCBI_GP:CAL22677.1;Name=CAL22677.1;Note=Similar to Escherichia coli glutamine transport system permease protein GlnP SW:GLNP_ECOLI (P10345) (219 aa) fasta scores: E(): 4.2e-18%2C 33.6%25 id in 214 aa%2C and to Pseudomonas aeruginosa probable amino acid permease PA2202 TR:AAG05590 (EMBL:AE004646) (225 aa) fasta scores: E(): 0%2C65.3%25 id in 222 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004646;product=putative amino acid transport system permease;protein_id=CAL22677.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4630312	4630377	.	-	.	ID=id9884;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4630390	4630617	.	-	.	ID=id9885;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 70.40%2C E-value 3.9e-17;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	4630528	4630614	.	-	.	ID=id9886;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	4630624	4630689	.	-	.	ID=id9887;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4630735	4630800	.	-	.	ID=id9888;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4630822	4630887	.	-	.	ID=id9889;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4630970	4631707	.	-	.	ID=gene4059;Name=YPO4110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4110
AL590842.1	EMBL	CDS	4630970	4631707	.	-	0	ID=cds3987;Parent=gene4059;Dbxref=GOA:Q7CFN2,InterPro:IPR000515,InterPro:IPR010065,UniProtKB/TrEMBL:Q7CFN2,NCBI_GP:CAL22678.1;Name=CAL22678.1;Note=Similar to Pseudomonas aeruginosa probable amino acid permease PA2203 TR:AAG05591 (EMBL:AE004646) (238 aa) fasta scores: E(): 0%2C 64.5%25 id in 234 aa%2C and to Pseudomonas aeruginosa probable permease of ABC transporter PA4194 TR:AAG07581 (EMBL:AE004835) (232 aa) fasta scores: E(): 1.9e-19%2C 42.6%25 id in 230 aa;gbkey=CDS;inference=similar to sequence:INSDC:AE004835;product=ABC transporter permease;protein_id=CAL22678.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4631006	4631071	.	-	.	ID=id9890;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4631060	4631302	.	-	.	ID=id9891;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 44.40%2C E-value 2.6e-09;gbkey=misc_feature;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	4631336	4631401	.	-	.	ID=id9892;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4631462	4631527	.	-	.	ID=id9893;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4631567	4631632	.	-	.	ID=id9894;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4631890	4632744	.	-	.	ID=gene4060;Name=YPO4111;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4111
AL590842.1	EMBL	CDS	4631890	4632744	.	-	0	ID=cds3988;Parent=gene4060;Dbxref=GOA:Q7CFN1,InterPro:IPR001638,InterPro:IPR018313,UniProtKB/TrEMBL:Q7CFN1,NCBI_GP:CAL22679.1;Name=CAL22679.1;Note=Similar to Pseudomonas aeruginosa probable binding protein component of ABC transporter PA2204 TR:AAG05592 (EMBL:AE004647) (268 aa) fasta scores: E(): 0%2C 58.4%25 id in 262 aa%2C and to Bacillus subtilis glutamine ABC transporter protein GlnH TR:O34563 (EMBL:Z99117) (273 aa) fasta scores: E(): 1.7e-21%2C 33.6%25 id in 271 aa;gbkey=CDS;inference=similar to sequence:INSDC:Z99117;product=putative periplasmic solute-binding protein;protein_id=CAL22679.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4631965	4632726	.	-	.	ID=id9895;Note=Pfam match to entry PF00497 SBP_bac_3%2C Bacterial extracellular solute-binding proteins%2C family 3%2C score 195.70%2C E-value 7e-55;gbkey=misc_feature;inference=protein motif:PF00497
AL590842.1	EMBL	sequence_feature	4632514	4632555	.	-	.	ID=id9896;Note=PS01039 Bacterial extracellular solute-binding proteins%2C family 3 signature.;gbkey=misc_feature;inference=protein motif:ProSite:PS01039
AL590842.1	EMBL	gene	4632964	4633635	.	-	.	ID=gene4061;Name=YPO4112;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YPO4112
AL590842.1	EMBL	CDS	4632964	4633635	.	-	0	ID=cds3989;Parent=gene4061;Dbxref=InterPro:IPR007607,UniProtKB/TrEMBL:Q7CFN0,NCBI_GP:CAL22680.1;Name=CAL22680.1;Note=Poor database matches%2C similar to Proteus mirabilis Ccm1 protein TR:O86433 (EMBL:AJ000084) (228 aa) fasta scores: E(): 1.6e-21%2C 37.7%25 id in 204 aa;gbkey=CDS;inference=similar to sequence:INSDC:AJ000084;product=putative membrane protein;protein_id=CAL22680.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4633483	4633539	.	-	.	ID=id9897;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4633552	4633608	.	-	.	ID=id9898;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4633931	4634653	.	-	.	ID=gene4062;Name=nmpA;gbkey=Gene;gene=nmpA;gene_biotype=protein_coding;gene_synonym=phoU;locus_tag=YPO4113
AL590842.1	EMBL	CDS	4633931	4634653	.	-	0	ID=cds3990;Parent=gene4062;Dbxref=GOA:Q0W9S4,InterPro:IPR026022,InterPro:IPR028366,UniProtKB/TrEMBL:Q0W9S4,NCBI_GP:CAL22681.1;Name=CAL22681.1;Note=Similar to Enterobacter cloacae phosphate transport system protein PhoU SW:PHOU_ENTCL (O32488) (241 aa) fasta scores: E(): 0%2C 91.3%25 id in 240 aa%2C and to Escherichia coli phosphate transport system protein PhoU SW:PHOU_ECOLI (P07656) (241 aa) fasta scores: E(): 0%2C 89.5%25 id in 237 aa;gbkey=CDS;gene=nmpA;product=putative phosphate transport system protein;protein_id=CAL22681.1;transl_table=11
AL590842.1	EMBL	gene	4634741	4635517	.	-	.	ID=gene4063;Name=phoT;gbkey=Gene;gene=phoT;gene_biotype=protein_coding;gene_synonym=pstB;locus_tag=YPO4114
AL590842.1	EMBL	CDS	4634741	4635517	.	-	0	ID=cds3991;Parent=gene4063;Dbxref=GOA:Q8Z9T1,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR005670,InterPro:IPR015850,InterPro:IPR017871,InterPro:IPR027417,NCBI_GP:CAL22682.1;Name=CAL22682.1;Note=Similar to Escherichia coli phosphate transport ATP-binding protein PstB SW:PSTB_ECOLI (P07655) (257 aa) fasta scores: E(): 0%2C 90.7%25 id in 258 aa%2C and to Enterobacter cloacae peripheral membrane protein PstB TR:O32487 (EMBL:D89963) (257 aa) fasta scores: E(): 0%2C91.5%25 id in 258 aa. Similar to YPO2833 (58.8%25 identity in 250 aa overlap);gbkey=CDS;gene=phoT;inference=similar to sequence:INSDC:D89963;product=putative phosphate transport ATP-binding protein;protein_id=CAL22682.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4634831	4635409	.	-	.	ID=id9899;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 252.00%2C E-value 8.1e-72;gbkey=misc_feature;gene=phoT;inference=protein motif:PF00005
AL590842.1	EMBL	sequence_feature	4635011	4635055	.	-	.	ID=id9900;Note=PS00211 ABC transporters family signature.;gbkey=misc_feature;gene=phoT;inference=protein motif:ProSite:PS00211
AL590842.1	EMBL	sequence_feature	4635365	4635388	.	-	.	ID=id9901;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=phoT;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4635598	4636485	.	-	.	ID=gene4064;Name=phoT;gbkey=Gene;gene=phoT;gene_biotype=protein_coding;gene_synonym=pstA;locus_tag=YPO4115
AL590842.1	EMBL	CDS	4635598	4636485	.	-	0	ID=cds3992;Parent=gene4064;Dbxref=GOA:P58655,InterPro:IPR000515,InterPro:IPR005672,NCBI_GP:CAL22683.1;Name=CAL22683.1;Note=Similar to Escherichia coli phosphate transport system permease protein PstA SW:PSTA_ECOLI (P07654) (296 aa) fasta scores: E(): 0%2C 88.8%25 id in 295 aa%2C and to Enterobacter cloacae integral membrane protein A PstA TR:O32486 (EMBL:D89963) (296 aa) fasta scores: E(): 0%2C89.5%25 id in 295 aa;gbkey=CDS;gene=phoT;inference=similar to sequence:INSDC:D89963;product=putative phosphate transport system permease;protein_id=CAL22683.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4635616	4635681	.	-	.	ID=id9902;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=phoT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4635733	4635963	.	-	.	ID=id9903;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 72.80%2C E-value 7e-18;gbkey=misc_feature;gene=phoT;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	4635817	4635882	.	-	.	ID=id9904;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=phoT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4635874	4635960	.	-	.	ID=id9905;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;gene=phoT;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	4635979	4636035	.	-	.	ID=id9906;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=phoT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4636051	4636116	.	-	.	ID=id9907;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=phoT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4636156	4636221	.	-	.	ID=id9908;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=phoT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4636333	4636398	.	-	.	ID=id9909;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=phoT;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4636487	4637443	.	-	.	ID=gene4065;Name=phoW;gbkey=Gene;gene=phoW;gene_biotype=protein_coding;gene_synonym=pstC;locus_tag=YPO4116
AL590842.1	EMBL	CDS	4636487	4637443	.	-	0	ID=cds3993;Parent=gene4065;Dbxref=GOA:Q0W9S1,InterPro:IPR000515,InterPro:IPR011864,UniProtKB/TrEMBL:Q0W9S1,NCBI_GP:CAL22684.1;Name=CAL22684.1;Note=Similar to Escherichia coli phosphate transport system permease protein PstC SW:PSTC_ECOLI (P07653) (319 aa) fasta scores: E(): 0%2C 87.7%25 id in 317 aa%2C and to Enterobacter cloacae peripheral membrane protein C PstC TR:O32485 (EMBL:D89963) (319 aa) fasta scores: E(): 0%2C88.0%25 id in 317 aa;gbkey=CDS;gene=phoW;inference=similar to sequence:INSDC:D89963;product=putative phosphate transport system permease;protein_id=CAL22684.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4636532	4636597	.	-	.	ID=id9910;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=phoW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4636637	4636870	.	-	.	ID=id9911;Note=Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 39.30%2C E-value 8.6e-08;gbkey=misc_feature;gene=phoW;inference=protein motif:PF00528
AL590842.1	EMBL	sequence_feature	4636697	4636762	.	-	.	ID=id9912;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=phoW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4636781	4636867	.	-	.	ID=id9913;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.;gbkey=misc_feature;gene=phoW;inference=protein motif:ProSite:PS00402
AL590842.1	EMBL	sequence_feature	4636880	4636945	.	-	.	ID=id9914;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=phoW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4637042	4637107	.	-	.	ID=id9915;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=phoW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4637144	4637209	.	-	.	ID=id9916;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=phoW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4637315	4637380	.	-	.	ID=id9917;Note=one of 6 probable transmembrane helices predicted;gbkey=misc_feature;gene=phoW;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4637672	4638712	.	-	.	ID=gene4066;Name=phoS;gbkey=Gene;gene=phoS;gene_biotype=protein_coding;gene_synonym=pstS;locus_tag=YPO4117
AL590842.1	EMBL	CDS	4637672	4638712	.	-	0	ID=cds3994;Parent=gene4066;Dbxref=GOA:Q7CFM9,InterPro:IPR005673,InterPro:IPR024370,PDB:2Z22,UniProtKB/TrEMBL:Q7CFM9,NCBI_GP:CAL22685.1;Name=CAL22685.1;Note=Similar to Escherichia coli phosphate-binding periplasmic protein precursor PstS SW:PSTS_ECOLI (P06128) (346 aa) fasta scores: E(): 0%2C 85.3%25 id in 346 aa%2C and to Enterobacter cloacae phosphate-binding protein PstS TR:O32484 (EMBL:D89963) (346 aa) fasta scores: E(): 0%2C83.5%25 id in 346 aa;gbkey=CDS;gene=phoS;inference=similar to sequence:INSDC:D89963;product=putative phosphate-binding periplasmic protein;protein_id=CAL22685.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4637807	4638640	.	-	.	ID=id9918;Note=Pfam match to entry PF01449 PstS%2C Phosphate-binding protein%2C score 445.50%2C E-value 4.7e-130;gbkey=misc_feature;gene=phoS;inference=protein motif:PF01449
AL590842.1	EMBL	sequence_feature	4638626	4638691	.	-	.	ID=id9919;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=phoS;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4639195	4641024	.	-	.	ID=gene4067;Name=glmS;gbkey=Gene;gene=glmS;gene_biotype=protein_coding;locus_tag=YPO4118
AL590842.1	EMBL	CDS	4639195	4641024	.	-	0	ID=cds3995;Parent=gene4067;Dbxref=GOA:Q8Z9S8,InterPro:IPR000583,InterPro:IPR001347,InterPro:IPR005855,InterPro:IPR017932,InterPro:IPR029055,NCBI_GP:CAL22686.1;Name=CAL22686.1;Note=Similar to Escherichia coli glucosamine--fructose-6-phosphate aminotransferase GlmS SW:GLMS_ECOLI (P17169) (608 aa) fasta scores: E(): 0%2C 85.0%25 id in 608 aa%2C and to Vibrio cholerae glucosamine--fructose-6-phosphate aminotransferase VC0487 TR:Q9KUM8 (EMBL:AE004135) (610 aa) fasta scores: E(): 0%2C73.0%25 id in 610 aa;gbkey=CDS;gene=glmS;inference=similar to sequence:INSDC:AE004135;product=glucosamine--fructose-6-phosphate aminotransferase;protein_id=CAL22686.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4639240	4639650	.	-	.	ID=id9920;Note=Pfam match to entry PF01380 SIS%2C SIS domain%2C score 142.20%2C E-value 8.9e-39;gbkey=misc_feature;gene=glmS;inference=protein motif:PF01380
AL590842.1	EMBL	sequence_feature	4639759	4640166	.	-	.	ID=id9921;Note=Pfam match to entry PF01380 SIS%2C SIS domain%2C score 162.20%2C E-value 8.7e-45;gbkey=misc_feature;gene=glmS;inference=protein motif:PF01380
AL590842.1	EMBL	sequence_feature	4640479	4641021	.	-	.	ID=id9922;Note=Pfam match to entry PF00310 GATase_2%2C Glutamine amidotransferases class-II%2C score 311.60%2C E-value 1.1e-105;gbkey=misc_feature;gene=glmS;inference=protein motif:PF00310
AL590842.1	EMBL	sequence_feature	4641007	4641024	.	-	.	ID=id9923;Note=PS00443 Glutamine amidotransferases class-II active site.;gbkey=misc_feature;gene=glmS;inference=protein motif:ProSite:PS00443
AL590842.1	EMBL	gene	4641225	4642595	.	-	.	ID=gene4068;Name=glmU;gbkey=Gene;gene=glmU;gene_biotype=protein_coding;locus_tag=YPO4119
AL590842.1	EMBL	CDS	4641225	4642595	.	-	0	ID=cds3996;Parent=gene4068;Dbxref=GOA:Q8Z9S7,InterPro:IPR001451,InterPro:IPR005882,InterPro:IPR011004,InterPro:IPR018357,InterPro:IPR025877,InterPro:IPR029044,PDB:4FCE,NCBI_GP:CAL22687.1;Name=CAL22687.1;Note=Similar to Escherichia coli UDP-N-acetylglucosamine pyrophosphorylase GlmU SW:GLMU_ECOLI (P17114) (456 aa) fasta scores: E(): 0%2C 82.2%25 id in 456 aa%2C and to Haemophilus influenzae UDP-N-acetylglucosamine pyrophosphorylase GlmU SW:GLMU_HAEIN (P43889) (456 aa) fasta scores: E(): 0%2C 68.6%25 id in 456 aa;gbkey=CDS;gene=glmU;product=UDP-N-acetylglucosamine pyrophosphorylase;protein_id=CAL22687.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4641303	4641389	.	-	.	ID=id9924;Note=PS00101 Hexapeptide-repeat containing-transferases signature.;gbkey=misc_feature;gene=glmU;inference=protein motif:ProSite:PS00101
AL590842.1	EMBL	sequence_feature	4641309	4641362	.	-	.	ID=id9925;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 10.80%2CE-value 26;gbkey=misc_feature;gene=glmU;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	4641363	4641416	.	-	.	ID=id9926;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 8.10%2C E-value 60;gbkey=misc_feature;gene=glmU;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	4641438	4641491	.	-	.	ID=id9927;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 9.40%2C E-value 40;gbkey=misc_feature;gene=glmU;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	4641540	4641593	.	-	.	ID=id9928;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 9.00%2C E-value 47;gbkey=misc_feature;gene=glmU;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	4641594	4641644	.	-	.	ID=id9929;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 0.50%2C E-value 6.6e+02;gbkey=misc_feature;gene=glmU;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	4641645	4641698	.	-	.	ID=id9930;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 16.40%2CE-value 0.7;gbkey=misc_feature;gene=glmU;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	4641714	4641767	.	-	.	ID=id9931;Note=Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C score 14.90%2CE-value 2;gbkey=misc_feature;gene=glmU;inference=protein motif:PF00132
AL590842.1	EMBL	sequence_feature	4641897	4642577	.	-	.	ID=id9932;Note=Pfam match to entry PF00483 NTP_transferase%2CNucleotidyl transferase%2C score -15.50%2C E-value 1.2e-06;gbkey=misc_feature;gene=glmU;inference=protein motif:PF00483
AL590842.1	EMBL	gene	4643216	4643638	.	-	.	ID=gene4069;Name=atpC;gbkey=Gene;gene=atpC;gene_biotype=protein_coding;gene_synonym=papG,uncC;locus_tag=YPO4120
AL590842.1	EMBL	CDS	4643216	4643638	.	-	0	ID=cds3997;Parent=gene4069;Dbxref=GOA:P58647,InterPro:IPR001469,InterPro:IPR020546,InterPro:IPR020547,NCBI_GP:CAL22688.1;Name=CAL22688.1;Note=Similar to Escherichia coli ATP synthase epsilon subunit protein AtpC SW:ATPE_ECOLI (P00832) (138 aa) fasta scores: E(): 0%2C 87.7%25 id in 138 aa%2C and to Salmonella typhimurium ATP synthase epsilon subunit protein AtpC TR:Q9RFL2 (EMBL:AF188265) (137 aa) fasta scores: E(): 0%2C87.6%25 id in 137 aa;gbkey=CDS;gene=atpC;inference=similar to sequence:INSDC:AF188265;product=ATP synthase epsilon subunit protein;protein_id=CAL22688.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4643249	4643629	.	-	.	ID=id9933;Note=Pfam match to entry PF00401 ATP-synt_DE%2C ATP synthase%2C Delta/Epsilon chain%2C score 179.40%2C E-value 5.7e-50;gbkey=misc_feature;gene=atpC;inference=protein motif:PF00401
AL590842.1	EMBL	gene	4643660	4645042	.	-	.	ID=gene4070;Name=atpD;gbkey=Gene;gene=atpD;gene_biotype=protein_coding;gene_synonym=papB,uncD;locus_tag=YPO4121
AL590842.1	EMBL	CDS	4643660	4645042	.	-	0	ID=cds3998;Parent=gene4070;Dbxref=GOA:Q7CFM8,InterPro:IPR000194,InterPro:IPR000793,InterPro:IPR003593,InterPro:IPR004100,InterPro:IPR005722,InterPro:IPR020003,InterPro:IPR024034,InterPro:IPR027417,NCBI_GP:CAL22689.1;Name=CAL22689.1;Note=Similar to Escherichia coli ATP synthase beta subunit protein AtpD SW:ATPB_ECOLI (P00824) (459 aa) fasta scores: E(): 0%2C 93.2%25 id in 459 aa%2C and to Salmonella typhimurium ATP synthase beta subunit protein AtpD TR:Q9RFL3 (EMBL:AF188265) (460 aa) fasta scores: E(): 0%2C93.0%25 id in 460 aa;gbkey=CDS;gene=atpD;inference=similar to sequence:INSDC:AF188265;product=ATP synthase beta subunit protein;protein_id=CAL22689.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4643663	4643950	.	-	.	ID=id9934;Note=Pfam match to entry PF00306 ATP-synt_ab_C%2C ATP synthase ab C terminal%2C score 193.80%2C E-value 2.6e-54;gbkey=misc_feature;gene=atpD;inference=protein motif:PF00306
AL590842.1	EMBL	sequence_feature	4644014	4645018	.	-	.	ID=id9935;Note=Pfam match to entry PF00006 ATP-synt_ab%2C ATP synthase alpha/beta family%2C score 643.80%2C E-value 9.3e-190;gbkey=misc_feature;gene=atpD;inference=protein motif:PF00006
AL590842.1	EMBL	sequence_feature	4644017	4644046	.	-	.	ID=id9936;Note=PS00152 ATP synthase alpha and beta subunits signature.;gbkey=misc_feature;gene=atpD;inference=protein motif:ProSite:PS00152
AL590842.1	EMBL	sequence_feature	4644572	4644595	.	-	.	ID=id9937;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=atpD;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4645198	4646061	.	-	.	ID=gene4071;Name=atpG;gbkey=Gene;gene=atpG;gene_biotype=protein_coding;gene_synonym=papC,uncG;locus_tag=YPO4122
AL590842.1	EMBL	CDS	4645198	4646061	.	-	0	ID=cds3999;Parent=gene4071;Dbxref=GOA:Q8Z9S5,InterPro:IPR000131,InterPro:IPR023632,InterPro:IPR023633,NCBI_GP:CAL22690.1;Name=CAL22690.1;Note=Similar to Escherichia coli ATP synthase gamma subunit protein AtpG SW:ATPG_ECOLI (P00837) (287 aa) fasta scores: E(): 0%2C 90.6%25 id in 287 aa%2C and to Salmonella typhimurium ATP synthase gamma subunit protein AtpG TR:Q9RFL4 (EMBL:AF188265) (287 aa) fasta scores: E(): 0%2C90.6%25 id in 287 aa;gbkey=CDS;gene=atpG;inference=similar to sequence:INSDC:AF188265;product=ATP synthase gamma subunit protein;protein_id=CAL22690.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4645201	4646058	.	-	.	ID=id9938;Note=Pfam match to entry PF00231 ATP-synt%2C ATP synthase%2Cscore 575.60%2C E-value 3.2e-169;gbkey=misc_feature;gene=atpG;inference=protein motif:PF00231
AL590842.1	EMBL	sequence_feature	4645204	4645245	.	-	.	ID=id9939;Note=PS00153 ATP synthase gamma subunit signature.;gbkey=misc_feature;gene=atpG;inference=protein motif:ProSite:PS00153
AL590842.1	EMBL	sequence_feature	4645837	4645971	.	-	.	ID=id9940;Note=PS00041 Bacterial regulatory proteins%2C araC family signature.;gbkey=misc_feature;gene=atpG;inference=protein motif:ProSite:PS00041
AL590842.1	EMBL	gene	4646123	4647664	.	-	.	ID=gene4072;Name=atpA;gbkey=Gene;gene=atpA;gene_biotype=protein_coding;gene_synonym=papA,uncA;locus_tag=YPO4123
AL590842.1	EMBL	CDS	4646123	4647664	.	-	0	ID=cds4000;Parent=gene4072;Dbxref=GOA:Q8Z9S4,InterPro:IPR000194,InterPro:IPR000793,InterPro:IPR004100,InterPro:IPR005294,InterPro:IPR020003,InterPro:IPR023366,InterPro:IPR027417,NCBI_GP:CAL22691.1;Name=CAL22691.1;Note=Similar to Escherichia coli ATP synthase alpha subunit protein AtpA SW:ATPA_ECOLI (P00822) (513 aa) fasta scores: E(): 0%2C 93.6%25 id in 513 aa%2C and to Salmonella typhimurium the ATP synthase alpha subunit protein AtpA TR:Q9RFL5 (EMBL:AF188265) (513 aa) fasta scores: E(): 0%2C93.2%25 id in 513 aa;gbkey=CDS;gene=atpA;inference=similar to sequence:INSDC:AF188265;product=ATP synthase alpha subunit protein;protein_id=CAL22691.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4646132	4646536	.	-	.	ID=id9941;Note=Pfam match to entry PF00422 ATP-synt_A-c%2C ATP synthase Alpha chain%2C C terminal%2C score 278.30%2C E-value 4.4e-94;gbkey=misc_feature;gene=atpA;inference=protein motif:PF00422
AL590842.1	EMBL	sequence_feature	4646537	4647586	.	-	.	ID=id9942;Note=Pfam match to entry PF00006 ATP-synt_ab%2C ATP synthase alpha/beta family%2C score 644.70%2C E-value 4.9e-190;gbkey=misc_feature;gene=atpA;inference=protein motif:PF00006
AL590842.1	EMBL	sequence_feature	4646540	4646569	.	-	.	ID=id9943;Note=PS00152 ATP synthase alpha and beta subunits signature.;gbkey=misc_feature;gene=atpA;inference=protein motif:ProSite:PS00152
AL590842.1	EMBL	sequence_feature	4647137	4647160	.	-	.	ID=id9944;Note=PS00017 ATP/GTP-binding site motif A (P-loop).;gbkey=misc_feature;gene=atpA;inference=protein motif:ProSite:PS00017
AL590842.1	EMBL	gene	4647679	4648212	.	-	.	ID=gene4073;Name=atpH;gbkey=Gene;gene=atpH;gene_biotype=protein_coding;gene_synonym=papE,uncH;locus_tag=YPO4124
AL590842.1	EMBL	CDS	4647679	4648212	.	-	0	ID=cds4001;Parent=gene4073;Dbxref=GOA:Q7CFM5,InterPro:IPR000711,InterPro:IPR020781,InterPro:IPR026015,NCBI_GP:CAL22692.1;Name=CAL22692.1;Note=Similar to Escherichia coli ATP synthase delta subunit protein AtpH SW:ATPD_ECOLI (P00831) (177 aa) fasta scores: E(): 0%2C 80.8%25 id in 177 aa%2C and to Salmonella typhimurium ATP synthase delta subunit protein AtpH TR:Q9RFL6 (EMBL:AF188265) (177 aa) fasta scores: E(): 0%2C80.2%25 id in 177 aa;gbkey=CDS;gene=atpH;inference=similar to sequence:INSDC:AF188265;product=ATP synthase delta subunit protein;protein_id=CAL22692.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4647688	4648194	.	-	.	ID=id9945;Note=Pfam match to entry PF00213 OSCP%2C ATP synthase delta (OSCP) subunit%2C score 228.20%2C E-value 1.6e-66;gbkey=misc_feature;gene=atpH;inference=protein motif:PF00213
AL590842.1	EMBL	sequence_feature	4647745	4647804	.	-	.	ID=id9946;Note=PS00389 ATP synthase delta (OSCP) subunit signature.;gbkey=misc_feature;gene=atpH;inference=protein motif:ProSite:PS00389
AL590842.1	EMBL	gene	4648227	4648697	.	-	.	ID=gene4074;Name=atpF;gbkey=Gene;gene=atpF;gene_biotype=protein_coding;gene_synonym=papF,uncF;locus_tag=YPO4125
AL590842.1	EMBL	CDS	4648227	4648697	.	-	0	ID=cds4002;Parent=gene4074;Dbxref=GOA:Q7CFM4,InterPro:IPR002146,InterPro:IPR005864,InterPro:IPR028987,NCBI_GP:CAL22693.1;Name=CAL22693.1;Note=Similar to Escherichia coli ATP synthase subunit B protein AtpF SW:ATPF_ECOLI (P00859) (156 aa) fasta scores: E(): 0%2C 90.4%25 id in 156 aa%2C and to Salmonella typhimurium ATP synthase subunit B protein AtpF TR:Q9RFL7 (EMBL:AF188265) (156 aa) fasta scores: E(): 0%2C 89.1%25 id in 156 aa;gbkey=CDS;gene=atpF;inference=similar to sequence:INSDC:AF188265;product=ATP synthase subunit B protein;protein_id=CAL22693.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4648230	4648682	.	-	.	ID=id9947;Note=Pfam match to entry PF00430 ATP-synt_B%2C ATP synthase B/B' CF(0)%2C score 166.80%2C E-value 2.1e-46;gbkey=misc_feature;gene=atpF;inference=protein motif:PF00430
AL590842.1	EMBL	sequence_feature	4648617	4648682	.	-	.	ID=id9948;Note=1 probable transmembrane helix predicted;gbkey=misc_feature;gene=atpF;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4648759	4648998	.	-	.	ID=gene4075;Name=atpE;gbkey=Gene;gene=atpE;gene_biotype=protein_coding;gene_synonym=papH,uncE;locus_tag=YPO4126
AL590842.1	EMBL	CDS	4648759	4648998	.	-	0	ID=cds4003;Parent=gene4075;Dbxref=GOA:P68706,InterPro:IPR000454,InterPro:IPR002379,InterPro:IPR005953,InterPro:IPR020537,NCBI_GP:CAL22694.1;Name=CAL22694.1;Note=Identical to Escherichia coli and Salmonella typhimurium ATP synthase subunit C protein AtpE SW:ATPL_ECOLI (P00844) (79 aa) fasta scores: E(): 2.9e-27%2C100.0%25 id in 79 aa. Similar to Buchnera aphidicola (subsp. Acyrthosiphon pisum) ATP synthase subunit C protein AtpE SW:ATPL_BUCAI (P57119) (79 aa) fasta scores: E(): 2.7e-24%2C83.5%25 id in 79 aa;gbkey=CDS;gene=atpE;inference=protein motif:TMHMM:2.0;product=ATP synthase subunit C protein;protein_id=CAL22694.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4648768	4648977	.	-	.	ID=id9949;Note=Pfam match to entry PF00137 ATP-synt_C%2C ATP synthase subunit C%2C score 92.40%2C E-value 8.7e-24;gbkey=misc_feature;gene=atpE;inference=protein motif:PF00137
AL590842.1	EMBL	sequence_feature	4648774	4648839	.	-	.	ID=id9950;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=atpE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4648816	4648881	.	-	.	ID=id9951;Note=PS00605 ATP synthase c subunit signature.;gbkey=misc_feature;gene=atpE;inference=protein motif:ProSite:PS00605
AL590842.1	EMBL	sequence_feature	4648903	4648968	.	-	.	ID=id9952;Note=one of 2 probable transmembrane helices predicted;gbkey=misc_feature;gene=atpE;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4649048	4649872	.	-	.	ID=gene4076;Name=atpB;gbkey=Gene;gene=atpB;gene_biotype=protein_coding;gene_synonym=papD,uncB;locus_tag=YPO4127
AL590842.1	EMBL	CDS	4649048	4649872	.	-	0	ID=cds4004;Parent=gene4076;Dbxref=GOA:Q7CFM3,InterPro:IPR000568,InterPro:IPR023011,NCBI_GP:CAL22695.1;Name=CAL22695.1;Note=Similar to Escherichia coli ATP synthase subunit A protein AtpB SW:ATP6_ECOLI (P00855) (271 aa) fasta scores: E(): 0%2C 84.1%25 id in 271 aa%2C and to Salmonella typhimurium ATP synthase subunit A protein AtpB TR:Q9RFL8 (EMBL:AF188265) (271 aa) fasta scores: E(): 0%2C 83.8%25 id in 271 aa;gbkey=CDS;gene=atpB;inference=similar to sequence:INSDC:AF188265;product=ATP synthase subunit B protein;protein_id=CAL22695.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4649066	4649572	.	-	.	ID=id9953;Note=Pfam match to entry PF00119 ATP-synt_A%2C ATP synthase A chain%2C score 242.00%2C E-value 8.5e-69;gbkey=misc_feature;gene=atpB;inference=protein motif:PF00119
AL590842.1	EMBL	sequence_feature	4649069	4649134	.	-	.	ID=id9954;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=atpB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4649165	4649230	.	-	.	ID=id9955;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=atpB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4649219	4649248	.	-	.	ID=id9956;Note=PS00449 ATP synthase a subunit signature.;gbkey=misc_feature;gene=atpB;inference=protein motif:ProSite:PS00449
AL590842.1	EMBL	sequence_feature	4649372	4649437	.	-	.	ID=id9957;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=atpB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4649498	4649563	.	-	.	ID=id9958;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=atpB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4649684	4649749	.	-	.	ID=id9959;Note=one of 5 probable transmembrane helices predicted;gbkey=misc_feature;gene=atpB;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4649912	4650295	.	-	.	ID=gene4077;Name=atpI;gbkey=Gene;gene=atpI;gene_biotype=protein_coding;gene_synonym=uncI;locus_tag=YPO4128
AL590842.1	EMBL	CDS	4649912	4650295	.	-	0	ID=cds4005;Parent=gene4077;Dbxref=InterPro:IPR005598,UniProtKB/TrEMBL:Q0W9Q9,NCBI_GP:CAL22696.1;Name=CAL22696.1;Note=Similar to Escherichia coli ATP synthase protein I AtpI SW:ATPZ_ECOLI (P03808) (125 aa) fasta scores: E(): 2.4e-24%2C 55.4%25 id in 121 aa%2C and to Salmonella typhimurium ATP synthase subunit I AtpI TR:Q9RFL9 (EMBL:AF188265) (130 aa) fasta scores: E(): 9.3e-25%2C 55.3%25 id in 123 aa;gbkey=CDS;gene=atpI;inference=similar to sequence:INSDC:AF188265;product=ATP synthase protein I;protein_id=CAL22696.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4649933	4649998	.	-	.	ID=id9960;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=atpI;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4650017	4650082	.	-	.	ID=id9961;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=atpI;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4650119	4650151	.	-	.	ID=id9962;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site.;gbkey=misc_feature;gene=atpI;inference=protein motif:ProSite:PS00013
AL590842.1	EMBL	sequence_feature	4650122	4650187	.	-	.	ID=id9963;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=atpI;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	sequence_feature	4650203	4650256	.	-	.	ID=id9964;Note=one of 4 probable transmembrane helices predicted;gbkey=misc_feature;gene=atpI;inference=protein motif:TMHMM:2.0
AL590842.1	EMBL	gene	4650962	4651582	.	-	.	ID=gene4078;Name=gidB;gbkey=Gene;gene=gidB;gene_biotype=protein_coding;locus_tag=YPO4129
AL590842.1	EMBL	CDS	4650962	4651582	.	-	0	ID=cds4006;Parent=gene4078;Dbxref=GOA:Q8Z9R9,InterPro:IPR003682,InterPro:IPR029063,NCBI_GP:CAL22697.1;Name=CAL22697.1;Note=Similar to Escherichia coli glucose inhibited division protein B GidB SW:GIDB_ECOLI (P17113) (207 aa) fasta scores: E(): 0%2C 77.2%25 id in 206 aa%2C and to Vibrio cholerae glucose inhibited division protein B VC2774 TR:Q9KNG5 (EMBL:AE004343) (210 aa) fasta scores: E(): 0%2C66.0%25 id in 200 aa;gbkey=CDS;gene=gidB;inference=similar to sequence:INSDC:AE004343;product=glucose inhibited division protein B;protein_id=CAL22697.1;transl_table=11
AL590842.1	EMBL	gene	4651728	4653617	.	-	.	ID=gene4079;Name=gidA;gbkey=Gene;gene=gidA;gene_biotype=protein_coding;locus_tag=YPO4130
AL590842.1	EMBL	CDS	4651728	4653617	.	-	0	ID=cds4007;Parent=gene4079;Dbxref=GOA:Q8Z9R8,InterPro:IPR002218,InterPro:IPR004416,InterPro:IPR020595,InterPro:IPR026904,NCBI_GP:CAL22698.1;Name=CAL22698.1;Note=Similar to Escherichia coli glucose inhibited division protein A GidA SW:GIDA_ECOLI (P17112) (629 aa) fasta scores: E(): 0%2C 86.0%25 id in 629 aa%2C and to Vibrio cholerae glucose inhibited division protein A GidA TR:Q9KNG4 (EMBL:AE004343) (631 aa) fasta scores: E(): 0%2C75.6%25 id in 627 aa;gbkey=CDS;gene=gidA;inference=similar to sequence:INSDC:AE004343;product=glucose inhibited division protein A;protein_id=CAL22698.1;transl_table=11
AL590842.1	EMBL	sequence_feature	4651749	4653599	.	-	.	ID=id9965;Note=Pfam match to entry PF01134 GIDA%2C Glucose inhibited division protein A%2C score 1516.20%2C E-value 0;gbkey=misc_feature;gene=gidA;inference=protein motif:PF01134
AL590842.1	EMBL	sequence_feature	4651767	4651832	.	-	.	ID=id9966;Note=Predicted helix-turn-helix motif with score 1147 (+3.09 SD) at aa 623-644%2C sequence SSIGQASRISGITPAAISILLV;gbkey=misc_feature;gene=gidA
AL590842.1	EMBL	sequence_feature	4652445	4652516	.	-	.	ID=id9967;Note=PS01281 Glucose inhibited division protein A family signature 2.;gbkey=misc_feature;gene=gidA;inference=protein motif:ProSite:PS01281
AL590842.1	EMBL	sequence_feature	4652757	4652801	.	-	.	ID=id9968;Note=PS01280 Glucose inhibited division protein A family signature 1.;gbkey=misc_feature;gene=gidA;inference=protein motif:ProSite:PS01280
##sequence-region AL117189.1 1 70305
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=214092
AL117189.1	EMBL	region	1	70305	.	+	.	ID=id9969;Dbxref=taxon:214092;Is_circular=true;Name=pCD1;gbkey=Src;genome=plasmid;mol_type=genomic DNA;note=biovar:Orientalis;plasmid-name=pCD1;strain=CO-92
AL117189.1	EMBL	repeat_region	1	1956	.	+	.	ID=id9970;Note=IS100 element;gbkey=repeat_region
AL117189.1	EMBL	gene	88	1110	.	+	.	ID=gene4080;Name=YPCD1.01;gbkey=Gene;gene=YPCD1.01;gene_biotype=protein_coding
AL117189.1	EMBL	CDS	88	1110	.	+	0	ID=cds4008;Parent=gene4080;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAB54878.1;Name=CAB54878.1;Note=YPCD1.01%2C probable transposase%2C len: 340 aa%3B putative insertion sequence IS100%2C identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (340 aa)%2C fasta scores%3B opt: 2328 z-score: 3808.9 E(): 0%2C 100.0%25 identity in 340 aa overlap. Similar to many others e.g. TRA0_ECOLI (EMBL:X14793)%2C istA%2C E.coli transposase for insertion sequence element IS21 (390 aa) (33.1%25 identity in 329 aa overlap). Contains Pfam match to entry PF00239 recombinase%2C Site-specific recombinases%2C score 25.70%2C E-value 4.8e-06. Contains probable helix-turn-helix motif at aa 19-40 (Score 2045%2C +6.15 SD);gbkey=CDS;gene=YPCD1.01;product=putative transposase;protein_id=CAB54878.1;transl_table=11
AL117189.1	EMBL	sequence_feature	112	195	.	+	.	ID=id9971;Note=Pfam match to entry PF00239 recombinase%2C Site-specific recombinases%2C score 25.70%2C E-value 4.8e-06;gbkey=misc_feature;gene=YPCD1.01
AL117189.1	EMBL	gene	1110	1889	.	+	.	ID=gene4081;Name=YPCD1.02;gbkey=Gene;gene=YPCD1.02;gene_biotype=protein_coding
AL117189.1	EMBL	CDS	1110	1889	.	+	0	ID=cds4009;Parent=gene4081;Dbxref=GOA:Q7ARN6,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARN6,NCBI_GP:CAB54879.1;Name=CAB54879.1;Note=YPCD1.02%2C probable transposase%2C len: 259 aa%3B putative insertion sequence IS100%2C identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (259 aa)%2C fasta scores%3B opt: 1658 z-score: 2693.4 E(): 0%2C 100.0%25 identity in 259 aa overlap. Similar to many others e.g. ISTB_ECOLI (EMBL:X14793)%2C istB%2C E.coli transposase for insertion sequence element IS21 (265 aa) (47.4%25 identity in 249 aa overlap). Contains PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=CDS;gene=YPCD1.02;product=putative ATP-binding protein;protein_id=CAB54879.1;transl_table=11
AL117189.1	EMBL	sequence_feature	1434	1457	.	+	.	ID=id9972;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=YPCD1.02
AL117189.1	EMBL	sequence_feature	1956	46271	.	+	.	ID=id9973;Note=identical to Y.pestis KIM5 plasmid pCD1 (EMBL:AF053946) from 46489 to 1955%2C and to Y.pestis KIM5 plasmid pCD1 (EMBL:AF074612) from 59097 to 14563%2C except where noted;gbkey=misc_feature
AL117189.1	EMBL	gene	1956	2204	.	-	.	ID=gene4082;Name=YPCD1.03c;gbkey=Gene;gene=YPCD1.03c;gene_biotype=protein_coding;partial=true;start_range=.,1956
AL117189.1	EMBL	CDS	1956	2204	.	-	0	ID=cds4010;Parent=gene4082;Dbxref=GOA:Q9RI27,InterPro:IPR009057,InterPro:IPR017894,UniProtKB/TrEMBL:Q9RI27,NCBI_GP:CAB54880.1;Name=CAB54880.1;Note=YPCD1.03c%2C probable transposase remnant%2C len: 83 aa%3B similar to several e.g. N-terminus of TRA0_ECOLI (EMBL:X14793)%2C istA%2C E.coli transposase for insertion sequence element IS21 (390 aa)%2C similarity is interrupted by the adjacent IS100 element. The remainder of this CDS is in YPCD1.97c. This region is also similar to TR:O68707 (EMBL:AF053946%2C AF074612) Y.pestis KIM5 putative transposase in pCD1 (390 aa). Contains probable helix-turn-helix motif at aa 19-40 (Score 1833%2C +5.43 SD);gbkey=CDS;gene=YPCD1.03c;partial=true;product=CAB54880.1;protein_id=CAB54880.1;start_range=.,1956;transl_table=11
AL117189.1	EMBL	sequence_feature	2304	2982	.	+	.	ID=id9974;Note=similar to E.agglomerans IS 1222 (EMBL:X78052) at DNA level;gbkey=misc_feature
AL117189.1	EMBL	gene	2304	2951	.	+	.	ID=gene4083;Name=YPCD1.04;gbkey=Gene;gene=YPCD1.04;gene_biotype=protein_coding;partial=true;start_range=.,2304
AL117189.1	EMBL	CDS	2304	2951	.	+	0	ID=cds4011;Parent=gene4083;Dbxref=GOA:Q9RI26,InterPro:IPR001584,InterPro:IPR012337,UniProtKB/TrEMBL:Q9RI26,NCBI_GP:CAB54881.1;Name=CAB54881.1;Note=YPCD1.04%2C possible transposase remnant%2C len: 215 aa%3B similar to many e.g. TR:Q46612 (EMBL:X78052) Enterobacter agglomerans IS 1222 ORFB (276 aa). Truncated at N-terminus;gbkey=CDS;gene=YPCD1.04;partial=true;product=CAB54881.1;protein_id=CAB54881.1;start_range=.,2304;transl_table=11
AL117189.1	EMBL	gene	3014	3406	.	-	.	ID=gene4084;Name=YPCD1.05c;gbkey=Gene;gene=YPCD1.05c;gene_biotype=protein_coding;gene_synonym=sycE,yerA
AL117189.1	EMBL	CDS	3014	3406	.	-	0	ID=cds4012;Parent=gene4084;Dbxref=GOA:P31491,InterPro:IPR005416,InterPro:IPR010261,PDB:1JYA,PDB:1K6Z,NCBI_GP:CAB54882.1;Name=CAB54882.1;Note=YPCD1.05c%2C sycE%2C yerA%2C yopE targeting protein%2C len: 130 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (130 aa)%2C fasta scores%3B opt: 861 z-score: 1608.5 E(): 0%2C 100.0%25 identity in 130 aa overlap and to YERA_YERPE (EMBL:M34279) from Y.pestis plasmid pYV019. Highly similar to TR:Q56910 (EMBL:Z18539)%2C sycE%2C from Yersinia enterocolitica (130 aa) (99.2%25 identity in 130 aa overlap) and YERA_YEREN (EMBL:M34278)%2C yerE%2C also from Y.enterocolitica (130 aa) (98.5%25 identity in 130 aa overlap). Similar to TR:Q51448 (EMBL:L27629)%2C ORF1%2C Pseudomonas aeruginosa exoenzyme S ORF1 (116 aa) (44.3%25 identity in 115 aa overlap);gbkey=CDS;gene=YPCD1.05c;product=putative yopE chaperone;protein_id=CAB54882.1;transl_table=11
AL117189.1	EMBL	gene	3600	4259	.	+	.	ID=gene4085;Name=YPCD1.06;gbkey=Gene;gene=YPCD1.06;gene_biotype=protein_coding;gene_synonym=yopE
AL117189.1	EMBL	CDS	3600	4259	.	+	0	ID=cds4013;Parent=gene4085;Dbxref=GOA:P31493,InterPro:IPR003537,InterPro:IPR014773,InterPro:IPR015110,PDB:1HY5,NCBI_GP:CAB54883.1;Name=CAB54883.1;Note=YPCD1.06%2C yopE%2C outer membrane virulence protein%2C len: 219 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (219 aa)%2C fasta scores%3B opt: 1409 z-score: 2140.1 E(): 0%2C 100.0%25 identity in 219 aa overlap and to YOPE_YERPE (EMBL:M34279)%2C yopE%2C from Y.pestis plasmid pYV019. Highly similar to YOPE_YERPS (EMBL:Y00543)%2C yopE%2C from Yersinia pseudotuberculosis plasmid pIB1 (219 aa) (99.1%25 identity in 219 aa overlap) and to YOPE_YEREN (EMBL:M92066)%2C yopE%2C from Yersinia enterocolitica plasmid pYV (219 aa) (95.9%25 identity in 219 aa overlap) and TR:Q56931 (EMBL:M34278)%2C yopE%2C also from Y.enterocolitica (219 aa) (94.1%25 identity in 219 aa overlap);gbkey=CDS;gene=YPCD1.06;product=putative outer membrane virulence protein;protein_id=CAB54883.1;transl_table=11
AL117189.1	EMBL	gene	4261	4557	.	+	.	ID=gene4086;Name=YPCD1.07;gbkey=Gene;gene=YPCD1.07;gene_biotype=protein_coding;gene_synonym=Y0076
AL117189.1	EMBL	CDS	4261	4557	.	+	0	ID=cds4014;Parent=gene4086;Dbxref=UniProtKB/TrEMBL:Q7ARJ9,NCBI_GP:CAB54884.1;Name=CAB54884.1;Note=YPCD1.07%2C Y0076%2C hypothetical protein%2C len: 98 aa%3B unknown function%2C identical Y0076 (EMBL:AF074612) Y.pestis KIM5 hypothetical protein (98 aa)%2C fasta scores%3B opt: 628 z-score: 1289.8 E(): 0%2C 100.0%25 identity in 98 aa overlap;gbkey=CDS;gene=YPCD1.07;product=hypothetical protein YPCD1.07;protein_id=CAB54884.1;transl_table=11
AL117189.1	EMBL	gene	4399	4698	.	-	.	ID=gene4087;Name=YPCD1.08c;gbkey=Gene;gene=YPCD1.08c;gene_biotype=protein_coding;gene_synonym=Y0075
AL117189.1	EMBL	CDS	4399	4698	.	-	0	ID=cds4015;Parent=gene4087;Dbxref=InterPro:IPR007712,InterPro:IPR028344,UniProtKB/TrEMBL:Q7ARJ8,NCBI_GP:CAB54885.1;Name=CAB54885.1;Note=YPCD1.08c%2C Y0075%2C hypothetical protein%2C len: 99 aa%3B unknown function%2C identical to Y0075 (EMBL:AF074612) Y.pestis KIM5 hypothetical protein (99 aa)%2C fasta scores%3B opt: 655 z-score: 1330.8 E(): 0%2C 99.0%25 identity in 99 aa overlap. Also similar to TR:O68848 (EMBL:AF055586) Vibrio cholerae hypothetical protein associated with repeated sequences (105 aa) (43.0%25 identity in 86 aa overlap);gbkey=CDS;gene=YPCD1.08c;product=hypothetical protein YPCD1.08c;protein_id=CAB54885.1;transl_table=11
AL117189.1	EMBL	gene	4691	4966	.	-	.	ID=gene4088;Name=YPCD1.09c;gbkey=Gene;gene=YPCD1.09c;gene_biotype=protein_coding;gene_synonym=Y0074
AL117189.1	EMBL	CDS	4691	4966	.	-	0	ID=cds4016;Parent=gene4088;Dbxref=GOA:Q9ZGW3,InterPro:IPR005360,InterPro:IPR010985,InterPro:IPR022789,NCBI_GP:CAB54886.1;Name=CAB54886.1;Note=YPCD1.09c%2C Y0074%2C hypothetical protein%2C len: 91 aa%3B unknown function%2C identical to Y0074 (EMBL:AF074612) Y.pestis KIM5 hypothetical protein (91 aa)%2C fasta scores%3B opt: 580 z-score: 768.8 E(): 0%2C 98.9%25 identity in 91 aa overlap. Also similar to TR:O85269 (EMBL:AF056093) Yersinia enterocolitica plasmid pYV hypothetical protein (80 aa) (97.5%25 identity in 80 aa overlap) and TR:P95254 (EMBL:Z84498) Rv1960c (MTCY09F9.04) M.tuberculosis hypothetical protein (83 aa) (43.9%25 identity in 57 aa overlap);gbkey=CDS;gene=YPCD1.09c;product=hypothetical protein YPCD1.09c;protein_id=CAB54886.1;transl_table=11
AL117189.1	EMBL	sequence_feature	5046	5414	.	-	.	ID=id9975;Note=similar to E.herbicola IS1327 (EMBL:X87144) at DNA level;gbkey=misc_feature
AL117189.1	EMBL	gene	5149	5397	.	-	.	ID=gene4089;Name=YPCD1.10c;gbkey=Gene;gene=YPCD1.10c;gene_biotype=protein_coding;partial=true;start_range=.,5149
AL117189.1	EMBL	CDS	5149	5397	.	-	0	ID=cds4017;Parent=gene4089;Dbxref=UniProtKB/TrEMBL:Q9RI25,NCBI_GP:CAB54887.1;Name=CAB54887.1;Note=YPCD1.10c%2C possible transposase remnant%2C len: 83 aa%3B similar to many e.g. TR:P94785 (EMBL:X87144) putative transposase from Erwinia herbicola plasmid pPATH insertion element IS1327 (234 aa);gbkey=CDS;gene=YPCD1.10c;partial=true;product=CAB54887.1;protein_id=CAB54887.1;start_range=.,5149;transl_table=11
AL117189.1	EMBL	pseudogene	5498	5629	.	+	.	ID=gene4090;Name=YPCD1.11;gbkey=Gene;gene=YPCD1.11;gene_biotype=pseudogene;pseudo=true
AL117189.1	EMBL	CDS	5498	5629	.	+	0	ID=cds4018;Parent=gene4090;Note=YPCD1.11%2C possible pseudogene%2C len: 132 bp%3B similar to part of many DNA repair proteins e.g. UMUC_SALTY (EMBL:M57431) Salmonella typhimurium umuC protein (422 aa);gbkey=CDS;gene=YPCD1.11;product=putative pseudogene;pseudo=true;transl_table=11
AL117189.1	EMBL	repeat_region	5813	6082	.	+	.	ID=id9976;Note=6x 45bp degenerate repeats. Identical to sopC region in Y.pestis KIM5 pCD1;gbkey=repeat_region
AL117189.1	EMBL	gene	6195	7157	.	-	.	ID=gene4091;Name=YPCD1.12c;gbkey=Gene;gene=YPCD1.12c;gene_biotype=protein_coding;gene_synonym=sopB
AL117189.1	EMBL	CDS	6195	7157	.	-	0	ID=cds4019;Parent=gene4091;Dbxref=GOA:O68706,InterPro:IPR003115,InterPro:IPR004437,UniProtKB/TrEMBL:O68706,NCBI_GP:CAB54889.1;Name=CAB54889.1;Note=YPCD1.12c%2C sopB%2C probable plasmid partitioning control protein%2C len: 320 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (320 aa)%2C fasta scores%3B opt: 2024 z-score: 3343.5 E(): 0%2C 100.0%25 identity in 320 aa overlap. Similar to many others e.g. SOPB_ECOLI (EMBL:X04619) E.coli F plasmid (323 aa) (49.1%25 identity in 324 aa overlap). Note that sopB in AF053946 has been designated with an initiation codon 44 codons downstream%2C resulting in a 277 aa translation. We have chosen the upstream initiation codon after comparison with other sopB genes%2C notably the F plasmid sequence. Contains probable helix-turn-helix motif at aa 181-202 (Score 1516%2C +4.35 SD);gbkey=CDS;gene=YPCD1.12c;product=putative plasmid partitioning control protein;protein_id=CAB54889.1;transl_table=11
AL117189.1	EMBL	gene	7157	8323	.	-	.	ID=gene4092;Name=YPCD1.13c;gbkey=Gene;gene=YPCD1.13c;gene_biotype=protein_coding;gene_synonym=sopA
AL117189.1	EMBL	CDS	7157	8323	.	-	0	ID=cds4020;Parent=gene4092;Dbxref=GOA:Q9RI24,InterPro:IPR000551,InterPro:IPR002586,InterPro:IPR009061,InterPro:IPR027417,UniProtKB/TrEMBL:Q9RI24,NCBI_GP:CAB54890.1;Name=CAB54890.1;Note=YPCD1.13c%2C sopA%2C probable plasmid partitioning transcription repressor%2C len: 388 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612)%2C fasta scores%3B opt: 2597 z-score: 4137.6 E(): 0%2C 100.0%25 identity in 388 aa overlap. Similar to many others e.g. SOPA_ECOLI (EMBL:X04619) E.coli F plasmid (388 aa) (69.2%25 identity in 386 aa overlap). Note that sopA in AF053946 has been designated with an initiation codon 14 codons upstream%2C resulting in a 402 aa translation. We have chosen the downstream initiation codon after comparison with other sopA genes%2C notably the F plasmid sequence. Contains Pfam match to entry PF00991 ParA%2C ParA family ATPase%2C score 78.10%2C E-value 1.8e-19. Contains probable helix-turn-helix motif at aa 41-62 (Score 2192%2C +6.65 SD);gbkey=CDS;gene=YPCD1.13c;product=putative plasmid partitioning transcription repressor;protein_id=CAB54890.1;transl_table=11
AL117189.1	EMBL	sequence_feature	7382	7720	.	-	.	ID=id9977;Note=Pfam match to entry PF00991 ParA%2C ParA family ATPase%2C score 78.10%2C E-value 1.8e-19;gbkey=misc_feature;gene=YPCD1.13c
AL117189.1	EMBL	repeat_region	9066	10300	.	+	.	ID=id9978;Note=compound repeat 2%2C IS1616 element;gbkey=repeat_region
AL117189.1	EMBL	repeat_region	9066	9105	.	+	.	ID=id9979;Note=repeat 7%3B imperfect inverted repeat;gbkey=repeat_region
AL117189.1	EMBL	gene	9123	9386	.	-	.	ID=gene4093;Name=YPCD1.14c;end_range=9386,.;gbkey=Gene;gene=YPCD1.14c;gene_biotype=protein_coding;partial=true
AL117189.1	EMBL	CDS	9123	9386	.	-	0	ID=cds4021;Parent=gene4093;Dbxref=GOA:Q9RI23,InterPro:IPR001584,InterPro:IPR012337,UniProtKB/TrEMBL:Q9RI23,NCBI_GP:CAB54891.1;Name=CAB54891.1;Note=YPCD1.14c%2C possible transposase remnant%2C len: 87 aa%3B similar to region of Y0070 from Y.pestis KIM5 pCD1 (EMBL:AF074612) and to regions of many transposases e.g. YIS2_SHISO (EMBL:X05952) Shigella sonnei insertion sequence IS600 putative ORFB;end_range=9386,.;gbkey=CDS;gene=YPCD1.14c;partial=true;product=putative transposase remnant;protein_id=CAB54891.1;transl_table=11
AL117189.1	EMBL	sequence_feature	9220	9728	.	-	.	ID=id9980;Note=similar to S.dysenteriae insertion sequence IS911 (EMBL:X17613) at DNA level;gbkey=misc_feature
AL117189.1	EMBL	gene	9429	9887	.	-	.	ID=gene4094;Name=YPCD1.15c;gbkey=Gene;gene=YPCD1.15c;gene_biotype=protein_coding
AL117189.1	EMBL	CDS	9429	9887	.	-	0	ID=cds4022;Parent=gene4094;Dbxref=GOA:Q9RI22,InterPro:IPR001584,InterPro:IPR012337,InterPro:IPR025948,UniProtKB/TrEMBL:Q9RI22,NCBI_GP:CAB54892.1;Name=CAB54892.1;Note=YPCD1.15c%2C hypothetical protein%2C len: 152 aa%3B unknown function%2C similar to many putative transposases e.g. L7046 in E.coli plasmid pO157 (EMBL:AF074613) putative transposase ORFB of IS911. Contains ORF Y0001 from Y.pestis KIM5 pCD1 (EMBL:AF074612);gbkey=CDS;gene=YPCD1.15c;product=hypothetical protein YPCD1.15c;protein_id=CAB54892.1;transl_table=11
AL117189.1	EMBL	gene	9911	10234	.	-	.	ID=gene4095;Name=YPCD1.16c;gbkey=Gene;gene=YPCD1.16c;gene_biotype=protein_coding;gene_synonym=Y0068
AL117189.1	EMBL	CDS	9911	10234	.	-	0	ID=cds4023;Parent=gene4095;Dbxref=GOA:Q7ARJ6,InterPro:IPR002514,InterPro:IPR009057,UniProtKB/TrEMBL:Q7ARJ6,NCBI_GP:CAB54893.1;Name=CAB54893.1;Note=YPCD1.16c%2C Y0068%2C hypothetical protein%2C len: 107 aa%3B unknown function%2C identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (107 aa)%2C fasta scores%3B opt: 675 z-score: 1236.9 E(): 0%2C 99.1%25 identity in 107 aa overlap and identical to Y0094 from the same plasmid. Also similar to YI91_ECOLI (EMBL:U14003) hypothetical protein from E.coli insertion element IS911 (100 aa) (41.7%25 identity in 84 aa overlap) and to many other ORFs associated with insertion elements. Contains probable helix-turn-helix motif at aa 31-52 (Score 1833%2C +5.43 SD). Contains probable coiled-coil from 68 to 98 (31 residues%2C probability 1.00);gbkey=CDS;gene=YPCD1.16c;product=hypothetical protein YPCD1.16c;protein_id=CAB54893.1;transl_table=11
AL117189.1	EMBL	sequence_feature	9970	9975	.	-	.	ID=id9981;Note=possible ribosome frameshift site;gbkey=misc_feature;gene=YPCD1.16c
AL117189.1	EMBL	repeat_region	10261	10300	.	-	.	ID=id9982;Note=repeat 7%3B imperfect inverted repeat;gbkey=repeat_region
AL117189.1	EMBL	pseudogene	10338	11046	.	-	.	ID=gene4096;Name=YPCD1.17c;gbkey=Gene;gene=YPCD1.17c;gene_biotype=pseudogene;gene_synonym=ylpA;pseudo=true
AL117189.1	EMBL	CDS	10338	11046	.	-	0	ID=cds4024;Parent=gene4096;Note=YPCD1.17c%2C ylpA%2C probable lipoprotein precursor pseudogene%2C len: 709 bp%3B identical to corresponding pseudogene from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612)%2C including the position and nature of the frameshift;gbkey=CDS;gene=YPCD1.17c;product=putative lipoprotein precursor pseudogene;pseudo=true;transl_table=11
AL117189.1	EMBL	repeat_region	11209	11403	.	+	.	ID=id9983;Note=repeat 10%3B degenerate inverted repeat;gbkey=repeat_region
AL117189.1	EMBL	sequence_feature	11246	11403	.	-	.	ID=id9984;Note=similar to S.enteritidis insertion element IS1351 (EMBL:Z83734) at DNA level;gbkey=misc_feature
AL117189.1	EMBL	sequence_feature	11251	11252	.	+	.	ID=id9985;Note=difference: GTGCATT is present in EMBL:AF053946 and in EMBL:AF074612;gbkey=misc_feature
AL117189.1	EMBL	gene	11260	11403	.	-	.	ID=gene4097;Name=YPCD1.18c;end_range=11403,.;gbkey=Gene;gene=YPCD1.18c;gene_biotype=protein_coding;partial=true;start_range=.,11260
AL117189.1	EMBL	CDS	11260	11403	.	-	0	ID=cds4025;Parent=gene4097;Dbxref=UniProtKB/TrEMBL:Q9RI21,NCBI_GP:CAB54895.1;Name=CAB54895.1;Note=YPCD1.18c%2C possible transposase remnant%2C len: 48 aa%3B highly similar to a region of ORFB from several insertion element transposases e.g. TR:O31218 (EMBL:AF034211) Desulfovibrio vulgaris transposase ORFB from insertion element ISD1 (310 aa);end_range=11403,.;gbkey=CDS;gene=YPCD1.18c;partial=true;product=CAB54895.1;protein_id=CAB54895.1;start_range=.,11260;transl_table=11
AL117189.1	EMBL	gene	11562	12110	.	-	.	ID=gene4098;Name=YPCD1.19c;gbkey=Gene;gene=YPCD1.19c;gene_biotype=protein_coding;gene_synonym=yopK,yopQ
AL117189.1	EMBL	CDS	11562	12110	.	-	0	ID=cds4026;Parent=gene4098;Dbxref=InterPro:IPR016505,UniProtKB/TrEMBL:O68704,NCBI_GP:CAB54896.1;Name=CAB54896.1;Note=YPCD1.19c%2C yopK%2C yopQ%2C probable virulence determinant protein%2C len: 182 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (182 aa)%2C fasta scores%3B opt: 1216 z-score: 2352.7 E(): 0%2C 100.0%25 identity in 182 aa overlap. Highly similar to TR:Q56935 (EMBL:U18804)%2C yopK from Yersinia pseudotuberculosis (182 aa) (99.5%25 identity in 182 aa overlap) and YOPQ_YEREN (EMBL:X52753)%2C yopQ from Yersinia enterocolitica (182 aa) (95.1%25 identity in 182 aa overlap);gbkey=CDS;gene=YPCD1.19c;product=putative virulence determinant protein;protein_id=CAB54896.1;transl_table=11
AL117189.1	EMBL	gene	12610	13578	.	+	.	ID=gene4099;Name=YPCD1.20;gbkey=Gene;gene=YPCD1.20;gene_biotype=protein_coding;gene_synonym=yopT
AL117189.1	EMBL	CDS	12610	13578	.	+	0	ID=cds4027;Parent=gene4099;Dbxref=GOA:O68703,InterPro:IPR003951,InterPro:IPR006473,NCBI_GP:CAB54897.1;Name=CAB54897.1;Note=YPCD1.20%2C yopT%2C probable cytotoxic effector protein%2C len: 322 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (322 aa)%2C fasta scores%3B opt: 2151 z-score: 3903.8 E(): 0%2C 100.0%25 identity in 322 aa overlap. Also highly similar to yopT from Yersinia enterocolitica plasmid pYV (EMBL:AF054981) (322 aa) (96.9%25 identity in 322 aa overlap). Shows much weaker similarity to the C-terminal third of TR:Q06277 (EMBL:L10282) Haemophilus somnus 76 kD surface protein (874 aa) (31.8%25 identity in 299 aa overlap) and to an internal region of lspA1 (EMBL:AF057695) Haemophilus ducreyi large supernatant protein 1 (4152 aa) (35.8%25 identity in 226 aa overlap) and lpsA2 (EMBL:AF057696) Haemophilus ducreyi large supernatant protein 2 (4919 aa) (35.8%25 identity in 226 aa overlap);gbkey=CDS;gene=YPCD1.20;product=putative cytotoxic effector protein;protein_id=CAB54897.1;transl_table=11
AL117189.1	EMBL	gene	13578	13976	.	+	.	ID=gene4100;Name=YPCD1.21;gbkey=Gene;gene=YPCD1.21;gene_biotype=protein_coding;gene_synonym=sycT
AL117189.1	EMBL	CDS	13578	13976	.	+	0	ID=cds4028;Parent=gene4100;Dbxref=GOA:Q9ZGW6,InterPro:IPR010261,NCBI_GP:CAB54898.1;Name=CAB54898.1;Note=YPCD1.21%2C sycT%2C probable yopT chaperone%2C len: 132 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (132 aa)%2C fasta scores%3B opt: 913 z-score: 1795.7 E(): 0%2C 100.0%25 identity in 132 aa overlap and highly similar to TR:O85243 (EMBL:AF054981)%2C sycT%2C from Yersinia enterocolitica plasmid pYV yopT chaperone (130 aa) (97.7%25 identity in 132 aa overlap);gbkey=CDS;gene=YPCD1.21;product=putative yopT chaperone;protein_id=CAB54898.1;transl_table=11
AL117189.1	EMBL	gene	14020	14409	.	-	.	ID=gene4101;Name=YPCD1.22c;gbkey=Gene;gene=YPCD1.22c;gene_biotype=protein_coding;gene_synonym=Y0063
AL117189.1	EMBL	CDS	14020	14409	.	-	0	ID=cds4029;Parent=gene4101;Dbxref=UniProtKB/TrEMBL:Q7ARJ3,NCBI_GP:CAB54899.1;Name=CAB54899.1;Note=YPCD1.22c%2C Y0063%2C hypothetical protein%2C len: 129 aa%3B unknown function%2C identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (129 aa)%2C fasta scores%3B opt: 832 z-score: 1646.4 E(): 0%2C 99.2%25 identity in 129 aa overlap;gbkey=CDS;gene=YPCD1.22c;product=hypothetical protein YPCD1.22c;protein_id=CAB54899.1;transl_table=11
AL117189.1	EMBL	repeat_region	14444	14718	.	+	.	ID=id9986;Note=repeat 1%2C similar to Yersinia intermedia insertion sequence IS1635.1;gbkey=repeat_region
AL117189.1	EMBL	gene	14681	15100	.	+	.	ID=gene4102;Name=YPCD1.23;gbkey=Gene;gene=YPCD1.23;gene_biotype=protein_coding;gene_synonym=Y0062
AL117189.1	EMBL	CDS	14681	15100	.	+	0	ID=cds4030;Parent=gene4102;Dbxref=UniProtKB/TrEMBL:Q7ARJ2,NCBI_GP:CAB54900.1;Name=CAB54900.1;Note=YPCD1.23%2C Y0062%2C hypothetical protein%2C len: 139 aa%3B unknown function%2C identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (129 aa)%2C fasta scores%3B opt: 914 z-score: 1870.6 E(): 0%2C 100.0%25 identity in 139 aa overlap;gbkey=CDS;gene=YPCD1.23;product=hypothetical protein YPCD1.23;protein_id=CAB54900.1;transl_table=11
AL117189.1	EMBL	repeat_region	15574	15847	.	-	.	ID=id9987;Note=repeat 1%2C similar to Yersinia intermedia insertion sequence IS1635.1;gbkey=repeat_region
AL117189.1	EMBL	gene	15628	15846	.	-	.	ID=gene4103;Name=YPCD1.24c;end_range=15846,.;gbkey=Gene;gene=YPCD1.24c;gene_biotype=protein_coding;partial=true
AL117189.1	EMBL	CDS	15628	15846	.	-	0	ID=cds4031;Parent=gene4103;Dbxref=UniProtKB/TrEMBL:Q9RI20,NCBI_GP:CAB54901.1;Name=CAB54901.1;Note=YPCD1.24c%2C possible transposase remnant%2C len: 72 aa%3B highly similar to C-terminus of TR:O87921 (EMBL:Y18002) Yersinia intermedia putative transposase from IS1635.1 (245 aa);end_range=15846,.;gbkey=CDS;gene=YPCD1.24c;partial=true;product=CAB54901.1;protein_id=CAB54901.1;transl_table=11
AL117189.1	EMBL	gene	15976	16293	.	+	.	ID=gene4104;Name=YPCD1.25;gbkey=Gene;gene=YPCD1.25;gene_biotype=protein_coding;partial=true;start_range=.,15976
AL117189.1	EMBL	CDS	15976	16293	.	+	0	ID=cds4032;Parent=gene4104;Dbxref=GOA:Q9RI19,InterPro:IPR001207,UniProtKB/TrEMBL:Q9RI19,NCBI_GP:CAB54902.1;Name=CAB54902.1;Note=YPCD1.25%2C possible transposase remnant%2C len: 105 aa%3B highly similar to region of TR:O68779 (EMBL:AF053947)%2C putative transposase from Y.pestis plasmid pMT1 (402 aa) and many known and putative transposases e.g. TRA3_RHIME (EMBL:M60971) Rhizobium meliloti transposase for insertion sequence element ISRm3 (400 aa);gbkey=CDS;gene=YPCD1.25;partial=true;product=CAB54902.1;protein_id=CAB54902.1;start_range=.,15976;transl_table=11
AL117189.1	EMBL	gene	16336	17565	.	-	.	ID=gene4105;Name=YPCD1.26c;gbkey=Gene;gene=YPCD1.26c;gene_biotype=protein_coding;gene_synonym=yopM
AL117189.1	EMBL	CDS	16336	17565	.	-	0	ID=cds4033;Parent=gene4105;Dbxref=GOA:P17778,InterPro:IPR001611,PDB:1G9U,PDB:1JL5,NCBI_GP:CAB54903.1;Name=CAB54903.1;Note=YPCD1.26c%2C yopM%2C probable targeted effector protein%2C 409 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (409 aa)%2C fasta scores%3B opt: 2673 z-score: 3547.3 E(): 0%2C 100.0%25 identity in 409 aa overlap. Highly similar to YOPM_YERPE (EMBL:M25810) from Y.pestis plasmid pCD1 (367 aa) (89.7%25 identity in 409 aa overlap) and TR:P74988 (EMBL:Z69926) from Yersinia enterocolitica (367 aa) (83.1%25 identity in 409 aa overlap). Shows weaker similarity to the N-terminal half of IPA4_SHIFL (EMBL:M76445)%2C ipaH%2C Shigella flexneri plasmid pWR100 antigen (574 aa) (37.0%25 identity in 273 aa overlap). Contains 7 Pfam matches to entry PF00560 LRR%2C Leucine Rich Repeat (2 copies);gbkey=CDS;gene=YPCD1.26c;product=putative targeted effector protein;protein_id=CAB54903.1;transl_table=11
AL117189.1	EMBL	sequence_feature	16426	16554	.	-	.	ID=id9988;Note=Pfam match to entry PF00560 LRR%2C Leucine Rich Repeat (2 copies)%2C score 26.00%2C E-value 0.00087;gbkey=misc_feature;gene=YPCD1.26c
AL117189.1	EMBL	sequence_feature	16555	16674	.	-	.	ID=id9989;Note=Pfam match to entry PF00560 LRR%2C Leucine Rich Repeat (2 copies)%2C score 22.80%2C E-value 0.0083;gbkey=misc_feature;gene=YPCD1.26c
AL117189.1	EMBL	sequence_feature	16726	16854	.	-	.	ID=id9990;Note=Pfam match to entry PF00560 LRR%2C Leucine Rich Repeat (2 copies)%2C score 31.90%2C E-value 1.5e-05;gbkey=misc_feature;gene=YPCD1.26c
AL117189.1	EMBL	sequence_feature	16855	16980	.	-	.	ID=id9991;Note=Pfam match to entry PF00560 LRR%2C Leucine Rich Repeat (2 copies)%2C score 22.00%2C E-value 0.014;gbkey=misc_feature;gene=YPCD1.26c
AL117189.1	EMBL	sequence_feature	16981	17106	.	-	.	ID=id9992;Note=Pfam match to entry PF00560 LRR%2C Leucine Rich Repeat (2 copies)%2C score 30.10%2C E-value 5.2e-05;gbkey=misc_feature;gene=YPCD1.26c
AL117189.1	EMBL	sequence_feature	17107	17232	.	-	.	ID=id9993;Note=Pfam match to entry PF00560 LRR%2C Leucine Rich Repeat (2 copies)%2C score 25.30%2C E-value 0.0014;gbkey=misc_feature;gene=YPCD1.26c
AL117189.1	EMBL	sequence_feature	17236	17352	.	-	.	ID=id9994;Note=Pfam match to entry PF00560 LRR%2C Leucine Rich Repeat (2 copies)%2C score 19.80%2C E-value 0.065;gbkey=misc_feature;gene=YPCD1.26c
AL117189.1	EMBL	repeat_region	16786	17149	.	-	.	ID=id9995;Note=3x 117bp degenerate repeats;gbkey=repeat_region;gene=YPCD1.26c
AL117189.1	EMBL	sequence_feature	18121	18897	.	+	.	ID=id9996;Note=similar to Yersinia intermedia insertion sequence IS1635.1 (EMBL:Y18002) at DNA level;gbkey=misc_feature
AL117189.1	EMBL	pseudogene	18229	18883	.	+	.	ID=gene4106;Name=YPCD1.27;gbkey=Gene;gene=YPCD1.27;gene_biotype=pseudogene;pseudo=true
AL117189.1	EMBL	CDS	18229	18883	.	+	0	ID=cds4034;Parent=gene4106;Note=YPCD1.27%2C probable transposase pseudogene%2C len: 655 bp%3B similar to many e.g. to TR:O87921 (EMBL:Y18002) Yersinia intermedia putative transposase from IS1635.1 (245 aa);gbkey=CDS;gene=YPCD1.27;product=putative transposase pseudogene;pseudo=true;transl_table=11
AL117189.1	EMBL	sequence_feature	18852	18853	.	+	.	ID=id9997;Note=difference: TCGAGACTGTAAACAATATTGTGTAATTGCCTGTTTTTGATATCTTGAGCTTACCGAACis present in EMBL:AF053946 and in EMBL:AF074612;gbkey=misc_feature;gene=YPCD1.27
AL117189.1	EMBL	repeat_region	18602	18930	.	+	.	ID=id9998;Note=repeat 1%2C similar to Yersinia intermedia insertion sequence IS1635.1;gbkey=repeat_region
AL117189.1	EMBL	sequence_feature	19188	19188	.	+	.	ID=id9999;Note=difference: C is A in EMBL:AF053946 and in EMBL:AF074612;gbkey=misc_feature
AL117189.1	EMBL	gene	19294	20214	.	-	.	ID=gene4107;Name=YPCD1.28c;gbkey=Gene;gene=YPCD1.28c;gene_biotype=protein_coding;gene_synonym=yopD
AL117189.1	EMBL	CDS	19294	20214	.	-	0	ID=cds4035;Parent=gene4107;Dbxref=InterPro:IPR008898,UniProtKB/TrEMBL:O68699,NCBI_GP:CAB54905.1;Name=CAB54905.1;Note=YPCD1.28c%2C yopD%2C probable Yop negative regulation/targeting component%2C len: 306 aa%3B identical to to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (306 aa)%2C fasta scores%3B opt: 1866 z-score: 3193.5 E(): 0%2C 100.0%25 identity in 306 aa overlap. Highly similar to YOPD_YERPS (EMBL:L06215)%2C yopD%2C from Yersinia pseudotuberculosis plasmid pIB1 (306 aa) (99.7%25 identity in 306 aa overlap) and YOPD_YEREN (EMBL:L06216)%2C yopD%2C from Yersinia enterocolitica plasmid pYVE227 (306 aa) (98.4%25 identity in 306 aa overlap). Similar to TR:O50280 (EMBL:AF035922)%2C pepD%2C Pseudomonas aeruginosa type III secretion system component (295 aa) (40.1%25 identity in 287 aa overlap);gbkey=CDS;gene=YPCD1.28c;product=putative Yop negative regulation/targeting component;protein_id=CAB54905.1;transl_table=11
AL117189.1	EMBL	gene	20233	21438	.	-	.	ID=gene4108;Name=YPCD1.29c;gbkey=Gene;gene=YPCD1.29c;gene_biotype=protein_coding;gene_synonym=yopB
AL117189.1	EMBL	CDS	20233	21438	.	-	0	ID=cds4036;Parent=gene4108;Dbxref=GOA:O68698,InterPro:IPR006972,UniProtKB/TrEMBL:O68698,NCBI_GP:CAB54906.1;Name=CAB54906.1;Note=YPCD1.29c%2C yopB%2C probable Yop targeting protein%2C len: 401 aa%3B identical to to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (401 aa)%2C fasta scores%3B opt: 2457 z-score: 3381.9 E(): 0%2C 100.0%25 identity in 401 aa overlap. Highly similar to YOPB_YERPS (EMBL:L06215)%2C yopB%2C from Yersinia pseudotuberculosis plasmid pIB1 (401 aa) (99.8%25 identity in 401 aa overlap) and YOPB_YEREN (EMBL:L06216)%2C yopB%2C from Yersinia enterocolitica plasmid pYVE227 (401 aa) (95.5%25 identity in 401 aa overlap). Similar to TR:O50279 (EMBL:AF035922)%2C pepB%2C Pseudomonas aeruginosa type III secretion system component (390 aa) (40.7%25 identity in 388 aa overlap). Contains probable coiled-coils from 104 to 162 (59 residues%2C probability 0.96) and from 342 to 380 (39 residues%2C probability 0.96);gbkey=CDS;gene=YPCD1.29c;product=putative Yop targeting protein;protein_id=CAB54906.1;transl_table=11
AL117189.1	EMBL	gene	21416	21922	.	-	.	ID=gene4109;Name=YPCD1.30c;gbkey=Gene;gene=YPCD1.30c;gene_biotype=protein_coding;gene_synonym=lcrH,sycD
AL117189.1	EMBL	CDS	21416	21922	.	-	0	ID=cds4037;Parent=gene4109;Dbxref=GOA:P21207,InterPro:IPR005415,InterPro:IPR011716,InterPro:IPR011990,InterPro:IPR013026,InterPro:IPR016379,NCBI_GP:CAB54907.1;Name=CAB54907.1;Note=YPCD1.30c%2C lcrH%2C sycD%2C probable yopB/yopD targeting protein%2C len: 168 aa%3B identical to to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (168 aa)%2C fasta scores%3B opt: 1100 z-score: 2161.1 E(): 0%2C 100.0%25 identity in 168 aa overlap. Highly similar to LCRH_YERPS (EMBL:M57893)%2C lcrH%2C from Yersinia pseudotuberculosis plasmid pIB1 (168 aa) (99.4%25 identity in 168 aa overlap) and TR:O87496 (EMBL:AF080155)%2C sycD%2C from Yersinia enterocolitica plasmid pYV (168 aa) (97.6%25 identity in 168 aa overlap). Also similar to others e.g. TR:O30528 (EMBL:AF010149)%2C pcrH%2C Pseudomonas aeruginosa type III secretion system component (168 aa) (58.4%25 identity in 166 aa overlap);gbkey=CDS;gene=YPCD1.30c;product=putative yopB/yopD chaperone;protein_id=CAB54907.1;transl_table=11
AL117189.1	EMBL	gene	21935	22915	.	-	.	ID=gene4110;Name=YPCD1.31c;gbkey=Gene;gene=YPCD1.31c;gene_biotype=protein_coding;gene_synonym=lcrV
AL117189.1	EMBL	CDS	21935	22915	.	-	0	ID=cds4038;Parent=gene4110;Dbxref=GOA:P0C7U7,InterPro:IPR005413,PDB:1R6F,PDB:4JBU,NCBI_GP:CAB54908.1;Name=CAB54908.1;Note=YPCD1.31c%2C lcrV%2C probable V antigen%2C antihost protein/regulator%2C len: 326 aa%3B identical to to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (326 aa)%2C fasta scores%3B opt: 2073 z-score: 3429.9 E(): 0%2C 100.0%25 identity in 326 aa overlap. Highly similar to LCRV_YERPS (EMBL:M57893)%2C lcrV%2C from Yersinia pseudotuberculosis plasmid pIB1 (326 aa) (96.9%25 identity in 326 aa overlap) and TR:O87495 (EMBL:AF080155)%2C lcrV%2C from Yersinia enterocolitica plasmid pYV (324 aa) (95.7%25 identity in 323 aa overlap). Contains differences to some sequences from Yersinia enterocolitica%2C notably a 9 aa deletion relative to TR:Q56853 (EMBL:X96796) and TR:Q56896 (EMBL:X96797). Also similar to TR:O30527 (EMBL:AF010149)%2C pcrV%2C Pseudomonas aeruginosa type III secretion system component (294 aa) (39.7%25 identity in 295 aa overlap);gbkey=CDS;gene=YPCD1.31c;product=putative V antigen%2C antihost protein/regulator;protein_id=CAB54908.1;transl_table=11
AL117189.1	EMBL	gene	22917	23204	.	-	.	ID=gene4111;Name=YPCD1.32c;gbkey=Gene;gene=YPCD1.32c;gene_biotype=protein_coding;gene_synonym=lcrG
AL117189.1	EMBL	CDS	22917	23204	.	-	0	ID=cds4039;Parent=gene4111;Dbxref=InterPro:IPR009863,NCBI_GP:CAB54909.1;Name=CAB54909.1;Note=YPCD1.32c%2C lcrG%2C probable Yop regulator%2C len: 95 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (95 aa)%2C fasta scores%3B opt: 632 z-score: 1173.8 E(): 0%2C 100.0%25 identity in 95 aa overlap. Identical to TR:O52157 (EMBL:AF022645)%2C lcrG%2C from Yersinia enterocolitica plasmid pYV (95 aa). Similar to TR:O30526 (EMBL:AF010149) Pseudomonas aeruginosa type III secretion system component (98 aa) (42.7%25 identity in 89 aa overlap). Contains probable coiled-coil from 5 to 37 (33 residues%2C probability 0.91);gbkey=CDS;gene=YPCD1.32c;product=putative Yop regulator;protein_id=CAB54909.1;transl_table=11
AL117189.1	EMBL	gene	23246	23686	.	-	.	ID=gene4112;Name=YPCD1.33c;gbkey=Gene;gene=YPCD1.33c;gene_biotype=protein_coding;gene_synonym=lcrR
AL117189.1	EMBL	CDS	23246	23686	.	-	0	ID=cds4040;Parent=gene4112;Dbxref=InterPro:IPR013405,InterPro:IPR022797,NCBI_GP:CAB54910.1;Name=CAB54910.1;Note=YPCD1.33c%2C lcrR%2C hypothetical protein%2C len: 146 aa%3B unknown function%2C identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (146 aa)%2C fasta scores%3B opt: 977 z-score: 1908.6 E(): 0%2C 100.0%25 identity in 146 aa overlap. Identical to LCRR_YERPS (EMBL:M96850)%2C lcrR%2C from Yersinia pseudotuberculosis plasmid pIB1 (146 aa). Highly similar to TR:O68549 (EMBL:AF050104)%2C lcrR%2C from Yersinia enterocolitica plasmid pYV (146 aa) (99.3%25 identity in 146 aa overlap) and a second Y.pestis KIM sequence LCRR_YERPE (EMBL:M35740) from pCD1 (146 aa) (98.6%25 identity in 146 aa overlap). Similar to TR:O30537 (EMBL:AF010150)%2C pcrR%2C Pseudomonas aeruginosa type III secretion system component (144 aa) (52.5%25 identity in 141 aa overlap);gbkey=CDS;gene=YPCD1.33c;product=hypothetical protein lcrR;protein_id=CAB54910.1;transl_table=11
AL117189.1	EMBL	sequence_feature	23564	23564	.	+	.	ID=id10000;Note=difference: T is G in EMBL:AF053946 and in EMBL:AF074612;gbkey=misc_feature
AL117189.1	EMBL	gene	23683	25797	.	-	.	ID=gene4113;Name=YPCD1.34c;gbkey=Gene;gene=YPCD1.34c;gene_biotype=protein_coding;gene_synonym=lcrD,yscV
AL117189.1	EMBL	CDS	23683	25797	.	-	0	ID=cds4041;Parent=gene4113;Dbxref=GOA:P69955,InterPro:IPR001712,InterPro:IPR006302,InterPro:IPR025505,NCBI_GP:CAB54911.1;Name=CAB54911.1;Note=YPCD1.34c%2C lcrD%2C yscV%2C probable membrane-bound Yop protein%2C len: 704 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (704 aa)%2C fasta scores%3B opt: 4430 z-score: 5446.5 E(): 0%2C 100.0%25 identity in 704 aa overlap. An alternative sequence LCRD_YERPE from Y.pestis has N388 instead of I388. Identical to TR:Q56976 (EMBL:M96850)%2C lcrD%2C from Yersinia pseudotuberculosis (407 aa). Highly similar to e.g. LCRD_YEREN (EMBL:X67771)%2C lcrD%2C from Yersinia enterocolitica plasmid pYV (99.1%25 identity in 704 aa overlap). Similar to many others e.g. TR:O30536 (EMBL:AF010150)%2C pcrD%2C Pseudomonas aeruginosa type III secretion system component (706 aa) (79.7%25 identity in 699 aa overlap). Contains Pfam match to entry PF00771 FHIPEP%2C FHIPEP family%2C score 1387.80%2C E-value 0 and PS00994 Bacterial export FHIPEP family signature. Contains a {c}8 repeat near the N-terminus;gbkey=CDS;gene=YPCD1.34c;product=putative membrane-bound Yop protein;protein_id=CAB54911.1;transl_table=11
AL117189.1	EMBL	sequence_feature	23710	25722	.	-	.	ID=id10001;Note=Pfam match to entry PF00771 FHIPEP%2C FHIPEP family%2C score 1387.80%2C E-value 0;gbkey=misc_feature;gene=YPCD1.34c
AL117189.1	EMBL	sequence_feature	25315	25386	.	-	.	ID=id10002;Note=PS00994 Bacterial export FHIPEP family signature;gbkey=misc_feature;gene=YPCD1.34c
AL117189.1	EMBL	repeat_region	25686	25693	.	-	.	ID=id10003;Note=(c)8;gbkey=repeat_region;gene=YPCD1.34c
AL117189.1	EMBL	gene	25784	26128	.	-	.	ID=gene4114;Name=YPCD1.35c;gbkey=Gene;gene=YPCD1.35c;gene_biotype=protein_coding;gene_synonym=yscY
AL117189.1	EMBL	CDS	25784	26128	.	-	0	ID=cds4042;Parent=gene4114;Dbxref=GOA:P61417,InterPro:IPR011990,InterPro:IPR016684,NCBI_GP:CAB54912.1;Name=CAB54912.1;Note=YPCD1.35c%2C yscY%2C probable type III secretion protein%2C len: 114 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (114 aa)%2C fasta scores%3B opt: 787 z-score: 1516.3 E(): 0%2C 100.0%25 identity in 114 aa overlap and to yscY (EMBL:AF054977) from Yersinia enterocolitica plasmid pYV. Similar to TR:O30535 (EMBL:AF010150)%2C pcr4%2C Pseudomonas aeruginosa type III secretion system component (109 aa) (49.1%25 identity in 106 aa overlap);gbkey=CDS;gene=YPCD1.35c;product=putative type III secretion protein;protein_id=CAB54912.1;transl_table=11
AL117189.1	EMBL	gene	26125	26493	.	-	.	ID=gene4115;Name=YPCD1.36c;gbkey=Gene;gene=YPCD1.36c;gene_biotype=protein_coding;gene_synonym=yscX
AL117189.1	EMBL	CDS	26125	26493	.	-	0	ID=cds4043;Parent=gene4115;Dbxref=GOA:P61416,InterPro:IPR012672,NCBI_GP:CAB54913.1;Name=CAB54913.1;Note=YPCD1.36c%2C yscX%2C probable type III secretion protein%2C len: 122 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (122 aa)%2C fasta scores%3B opt: 802 z-score: 1406.4 E(): 0%2C 99.2%25 identity in 122 aa overlap. Highly similar to yscX (EMBL:AF054977) from Yersinia enterocolitica plasmid pYV (122 aa) (98.4%25 identity in 122 aa overlap) and similar to TR:O30534 (EMBL:AF010150)%2C pcr3%2C Pseudomonas aeruginosa type III secretion system component (121 aa) (49.2%25 identity in 122 aa overlap);gbkey=CDS;gene=YPCD1.36c;product=putative type III secretion protein;protein_id=CAB54913.1;transl_table=11
AL117189.1	EMBL	gene	26490	26861	.	-	.	ID=gene4116;Name=YPCD1.37c;gbkey=Gene;gene=YPCD1.37c;gene_biotype=protein_coding;gene_synonym=sycN
AL117189.1	EMBL	CDS	26490	26861	.	-	0	ID=cds4044;Parent=gene4116;Dbxref=GOA:P61380,InterPro:IPR012673,PDB:1XKP,NCBI_GP:CAB54914.1;Name=CAB54914.1;Note=YPCD1.37c%2C sycN%2C probable type III secretion protein%2C len: 123 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (123 aa)%2C fasta scores%3B opt: 804 z-score: 1074.5 E(): 0%2C 99.2%25 identity in 123 aa overlap. Highly similar to TR:Q52095 (EMBL:M32097%2C AF054977) from Yersinia enterocolitica plasmid pYV (123 aa) (97.6%25 identity in 123 aa overlap) and similar to TR:O30533 (EMBL:AF010150)%2C pcr2%2C Pseudomonas aeruginosa type III secretion system component (123 aa) (46.7%25 identity in 122 aa overlap);gbkey=CDS;gene=YPCD1.37c;product=putative type III secretion protein;protein_id=CAB54914.1;transl_table=11
AL117189.1	EMBL	gene	26848	27126	.	-	.	ID=gene4117;Name=YPCD1.38c;gbkey=Gene;gene=YPCD1.38c;gene_biotype=protein_coding;gene_synonym=tyeA
AL117189.1	EMBL	CDS	26848	27126	.	-	0	ID=cds4045;Parent=gene4117;Dbxref=InterPro:IPR013351,InterPro:IPR015144,PDB:1XL3,NCBI_GP:CAB54915.1;Name=CAB54915.1;Note=YPCD1.38c%2C tyeA%2C probable Yop secretion and targeting protein%2C len: 92 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (92 aa)%2C fasta scores%3B opt: 610 z-score: 1227.2 E(): 0%2C 100.0%25 identity in 92 aa overlap and to tyeA (EMBL:AF033863) from Yersinia enterocolitica plasmid pYV. Similar to TR:O30532 (EMBL:AF010150)%2C pcr1%2C Pseudomonas aeruginosa type III secretion system component (92 aa) (47.1%25 identity in 87 aa overlap);gbkey=CDS;gene=YPCD1.38c;product=putative Yop secretion and targeting protein;protein_id=CAB54915.1;transl_table=11
AL117189.1	EMBL	gene	27107	27988	.	-	.	ID=gene4118;Name=YPCD1.39c;gbkey=Gene;gene=YPCD1.39c;gene_biotype=protein_coding;gene_synonym=lcrE,yopN
AL117189.1	EMBL	CDS	27107	27988	.	-	0	ID=cds4046;Parent=gene4118;Dbxref=GOA:P68640,InterPro:IPR010812,InterPro:IPR013401,PDB:1XKP,PDB:1XL3,NCBI_GP:CAB54916.1;Name=CAB54916.1;Note=YPCD1.39c%2C yopN%2C lcrE%2C probable membrane-bound Yop targeting protein%2C len: 293 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (293 aa)%2C fasta scores%3B opt: 1873 z-score: 3045.8 E(): 0%2C 100.0%25 identity in 293 aa overlap and to YOPN_YERPS (EMBL:X51833)%2C yopN from Yersinia pseudotuberculosis plasmid pIB1. Highly similar to TR:O68333 (EMBL:AF033863)%2C yopN from Yersinia enterocolitica plasmid pYV (293 aa) (95.6%25 identity in 293 aa overlap). Similar to TR:O30531 (EMBL:AF010150)%2C popN%2C Pseudomonas aeruginosa type III secretion system component (288 aa) (47.5%25 identity in 276 aa overlap). Contains probable coiled-coil from 61 to 100 (40 residues%2C probability 0.94);gbkey=CDS;gene=YPCD1.39c;product=putative membrane-bound Yop targeting protein;protein_id=CAB54916.1;transl_table=11
AL117189.1	EMBL	gene	28186	29505	.	+	.	ID=gene4119;Name=YPCD1.40;gbkey=Gene;gene=YPCD1.40;gene_biotype=protein_coding;gene_synonym=yscN
AL117189.1	EMBL	CDS	28186	29505	.	+	0	ID=cds4047;Parent=gene4119;Dbxref=GOA:Q7ARI8,InterPro:IPR000194,InterPro:IPR003593,InterPro:IPR004100,InterPro:IPR005714,InterPro:IPR013380,InterPro:IPR020003,InterPro:IPR027417,UniProtKB/TrEMBL:Q7ARI8,NCBI_GP:CAB54917.1;Name=CAB54917.1;Note=YPCD1.40%2C yscN%2C probable Yop secretion ATP synthase%2C len: 439 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (439 aa)%2C fasta scores%3B opt: 2844 z-score: 3462.1 E(): 0%2C 100.0%25 identity in 439 aa overlap. Highly similar to YSCN_YEREN (EMBL:U02499)%2C yscN%2C from Yersinia enterocolitica plasmid pYV227 (439 aa) (99.8%25 identity in 439 aa overlap) and YSCN_YERPS (EMBL:U00998)%2C yscN%2C from Yersinia pseudotuberculosis plasmid pIB1 (439 aa) (99.3%25 identity in 439 aa overlap). Similar to many other putative transport ATPases e.g. SSAN_SALTY (EMBL:Y09357)%2C ssaN%2C Salmonella typhimurium probable secretion system apparatus ATP synthase (433 aa) (56.6%25 identity in 401 aa overlap) and to ATP synthase beta subunits e.g. ATPB_ECOLI (EMBL:X01631) E.coli ATP synthase beta chain (459 aa) (29.06%25 identity in 406 aa overlap). Contains Pfam match to entry PF00006 ATP-synt_ab%2C ATP synthase alpha and beta subunits%2C score 534.80%2C E-value 6e-157 and PS00017 ATP/GTP-binding site motif A (P-loop). Contains a g{9} repeat;gbkey=CDS;gene=YPCD1.40;product=putative Yops secretion ATP synthase;protein_id=CAB54917.1;transl_table=11
AL117189.1	EMBL	sequence_feature	28273	29262	.	+	.	ID=id10004;Note=Pfam match to entry PF00006 ATP-synt_ab%2C ATP synthase alpha and beta subunits%2C score 534.80%2C E-value 6e-157;gbkey=misc_feature;gene=YPCD1.40
AL117189.1	EMBL	sequence_feature	28690	28713	.	+	.	ID=id10005;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=YPCD1.40
AL117189.1	EMBL	sequence_feature	29230	29259	.	+	.	ID=id10006;Note=PS00152 ATP synthase alpha and beta subunits signature;gbkey=misc_feature;gene=YPCD1.40
AL117189.1	EMBL	repeat_region	28699	28707	.	+	.	ID=id10007;Note=(g)9;gbkey=repeat_region;gene=YPCD1.40
AL117189.1	EMBL	gene	29502	29966	.	+	.	ID=gene4120;Name=YPCD1.41;gbkey=Gene;gene=YPCD1.41;gene_biotype=protein_coding;gene_synonym=yscO
AL117189.1	EMBL	CDS	29502	29966	.	+	0	ID=cds4048;Parent=gene4120;Dbxref=GOA:O30878,InterPro:IPR009929,UniProtKB/TrEMBL:O30878,NCBI_GP:CAB54918.1;Name=CAB54918.1;Note=YPCD1.41%2C yscO%2C probable type III secretion protein%2C len: 154 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (154 aa)%2C fasta scores%3B opt: 1026 z-score: 1732.5 E(): 0%2C 100.0%25 identity in 154 aa overlap and highly similar to YSCO_YERPS (EMBL:L25667)%2C yscO%2C from Yersinia pseudotuberculosis plasmid pIB1 (154 aa) (98.7%25 identity in 154 aa overlap). Similar to the partial sequence of TR:O30539 (EMBL:AF010151) Pseudomonas aeruginosa pscO (141 aa) (40.4%25 identity in 136 aa overlap). Contains probable coiled-coil from 65 to 120 (56 residues%2C probability 1.00);gbkey=CDS;gene=YPCD1.41;product=putative type III secretion protein;protein_id=CAB54918.1;transl_table=11
AL117189.1	EMBL	gene	29966	31333	.	+	.	ID=gene4121;Name=YPCD1.42;gbkey=Gene;gene=YPCD1.42;gene_biotype=protein_coding;gene_synonym=yscP
AL117189.1	EMBL	CDS	29966	31333	.	+	0	ID=cds4049;Parent=gene4121;Dbxref=GOA:P68587,InterPro:IPR013354,InterPro:IPR021136,NCBI_GP:CAB54919.1;Name=CAB54919.1;Note=YPCD1.42%2C yscP%2C probable type III secretion protein%2C len: 455 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (455 aa)%2C fasta scores%3B opt: 3027 z-score: 3941.8 E(): 0%2C 100.0%25 identity in 455 aa overlap;gbkey=CDS;gene=YPCD1.42;product=putative type III secretion protein;protein_id=CAB54919.1;transl_table=11
AL117189.1	EMBL	gene	31330	32253	.	+	.	ID=gene4122;Name=YPCD1.43;gbkey=Gene;gene=YPCD1.43;gene_biotype=protein_coding;gene_synonym=yscQ
AL117189.1	EMBL	CDS	31330	32253	.	+	0	ID=cds4050;Parent=gene4122;Dbxref=GOA:P42713,InterPro:IPR001543,InterPro:IPR003283,InterPro:IPR013385,NCBI_GP:CAB54920.1;Name=CAB54920.1;Note=YPCD1.43%2C yscQ%2C probable type III secretion protein%2C len: 307 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (307 aa)%2C fasta scores%3B opt: 2023 z-score: 3242.7 E(): 0%2C 100.0%25 identity in 307 aa overlap. Highly similar to YSCQ_YERPS (EMBL:L25667)%2C yscQ%2C from Yersinia pseudotuberculosis plasmid pIB1 (307 aa) (99.3%25 identity in 307 aa overlap). Weak similarity to e.g. SPAO_SALTI (EMBL:U29363)%2C spaO%2C Salmonella typhi surface antigen presentation protein (303 aa) (29.5%25 identity in 241 aa overlap) and putative nodulation-control proteins e.g. TR:P72274 (EMBL:L12251)%2C hcrQ%2C Rhizobium fredii nodulation protein (382 aa) (27.7%25 identity in 220 aa overlap). Contains Pfam match to entry PF01052 SpoA%2C Surface presentation of antigens (SPOA) protein%2C score 424.60%2C E-value 9.2e-124;gbkey=CDS;gene=YPCD1.43;product=putative type III secretion protein;protein_id=CAB54920.1;transl_table=11
AL117189.1	EMBL	sequence_feature	31351	32241	.	+	.	ID=id10008;Note=Pfam match to entry PF01052 SpoA%2C Surface presentation of antigens (SPOA) protein%2C score 424.60%2C E-value 9.2e-124;gbkey=misc_feature;gene=YPCD1.43
AL117189.1	EMBL	gene	32250	32903	.	+	.	ID=gene4123;Name=YPCD1.44;gbkey=Gene;gene=YPCD1.44;gene_biotype=protein_coding;gene_synonym=yscR
AL117189.1	EMBL	CDS	32250	32903	.	+	0	ID=cds4051;Parent=gene4123;Dbxref=GOA:P69980,InterPro:IPR005773,InterPro:IPR005838,NCBI_GP:CAB54921.1;Name=CAB54921.1;Note=YPCD1.44%2C yscR%2C probable type III secretion membrane protein%2C len: 217 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (217 aa)%2C fasta scores%3B opt: 1375 z-score: 2288.5 E(): 0%2C 100.0%25 identity in 217 aa overlap and to YSCR_YERPS (EMBL:L25667)%2C yscR%2C from Yersinia pseudotuberculosis plasmid pIB1. Similar to virulence determinants involving host cell invasion from e.g. YSCR_SALTY (EMBL:X99944)%2C yscR%2C Salmonella typhimurium virulence protein (215 aa) (54.4%25 identity in 215 aa overlap) and also TR:P72275 (EMBL:L12251)%2C hcrR%2C Rhizobium fredii nodulation protein (249 aa) (45.5%25 identity in 220 aa overlap). Contains Pfam match to entry PF00813 FliP%2C FliP family%2C score 463.50%2C E-value 1.7e-135. Contains PS01060 Flagella transport protein fliP family signature 1 and PS01061 Flagella transport protein fliP family signature 2;gbkey=CDS;gene=YPCD1.44;product=putative Yop secretion membrane protein;protein_id=CAB54921.1;transl_table=11
AL117189.1	EMBL	sequence_feature	32286	32885	.	+	.	ID=id10009;Note=Pfam match to entry PF00813 FliP%2C FliP family%2C score 463.50%2C E-value 1.7e-135;gbkey=misc_feature;gene=YPCD1.44
AL117189.1	EMBL	sequence_feature	32679	32726	.	+	.	ID=id10010;Note=PS01060 Flagella transport protein fliP family signature 1;gbkey=misc_feature;gene=YPCD1.44
AL117189.1	EMBL	sequence_feature	32823	32861	.	+	.	ID=id10011;Note=PS01061 Flagella transport protein fliP family signature 2;gbkey=misc_feature;gene=YPCD1.44
AL117189.1	EMBL	gene	32905	33171	.	+	.	ID=gene4124;Name=YPCD1.45;gbkey=Gene;gene=YPCD1.45;gene_biotype=protein_coding;gene_synonym=yscS
AL117189.1	EMBL	CDS	32905	33171	.	+	0	ID=cds4052;Parent=gene4124;Dbxref=GOA:P69982,InterPro:IPR002191,InterPro:IPR006306,NCBI_GP:CAB54922.1;Name=CAB54922.1;Note=YPCD1.45%2C yscS%2C probable type III secretion protein%2C len: 88 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (88 aa)%2C fasta scores%3B opt: 543 z-score: 1050.0 E(): 0%2C 100.0%25 identity in 88 aa overlap. YSCS_YERPE (EMBL:AF020214)%2C an alternative sequence from KIM5 (79 aa) has differences at the C-terminus (97.4%25 identity in 78 aa overlap). Similar to other bacterial type III secretion components e.g. TR:Q46647 (EMBL:L25828)%2C hrcS%2C Erwinia amylovora putative harpin secretion protein (86 aa) (47.6%25 identity in 84 aa overlap) and SSAS_SALTY (EMBL:X99944)%2C ssaS%2C Salmonella typhimurium virulence protein (88 aa) (51.2%25 identity in 84 aa overlap). Contains Pfam match to entry PF01313 Bac_export_3%2C Bacterial export proteins%2C family 3%2C score 152.20%2C E-value 9.1e-42;gbkey=CDS;gene=YPCD1.45;product=putative type III secretion protein;protein_id=CAB54922.1;transl_table=11
AL117189.1	EMBL	sequence_feature	32914	33141	.	+	.	ID=id10012;Note=Pfam match to entry PF01313 Bac_export_3%2C Bacterial export proteins%2C family 3%2C score 152.20%2C E-value 9.1e-42;gbkey=misc_feature;gene=YPCD1.45
AL117189.1	EMBL	gene	33168	33953	.	+	.	ID=gene4125;Name=YPCD1.46;gbkey=Gene;gene=YPCD1.46;gene_biotype=protein_coding;gene_synonym=yscT
AL117189.1	EMBL	CDS	33168	33953	.	+	0	ID=cds4053;Parent=gene4125;Dbxref=GOA:P69984,InterPro:IPR002010,InterPro:IPR006304,NCBI_GP:CAB54923.1;Name=CAB54923.1;Note=YPCD1.46%2C yscT%2C probable type III secretion protein%2C len: 261 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (261 aa)%2C fasta scores%3B opt: 1656 z-score: 2658.1 E(): 0%2C 100.0%25 identity in 261 aa overlap and to YSCT_YERPS (EMBL:L25667)%2C yscT%2C from Yersinia pseudotuberculosis plasmid pIB1. Similar to other bacterial type III secretion components e.g. TR:Q46648 (EMBL:L25828)%2C hrcT%2C Erwinia amylovora putative harpin secretion protein (265 aa) (34.2%25 identity in 257 aa overlap) and SSAT_SALTY (EMBL:X99944)%2C ssaT%2C Salmonella typhimurium secretion system protein (259 aa) (32.2%25 identity in 242 aa overlap). Contains Pfam match to entry PF01311 Bac_export_1%2C Bacterial export proteins%2C family 1%2C score 383.80%2C E-value 1.7e-111;gbkey=CDS;gene=YPCD1.46;product=putative type III secretion protein;protein_id=CAB54923.1;transl_table=11
AL117189.1	EMBL	sequence_feature	33183	33926	.	+	.	ID=id10013;Note=Pfam match to entry PF01311 Bac_export_1%2C Bacterial export proteins%2C family 1%2C score 383.80%2C E-value 1.7e-111;gbkey=misc_feature;gene=YPCD1.46
AL117189.1	EMBL	gene	33953	35017	.	+	.	ID=gene4126;Name=YPCD1.47;gbkey=Gene;gene=YPCD1.47;gene_biotype=protein_coding;gene_synonym=yscU
AL117189.1	EMBL	CDS	33953	35017	.	+	0	ID=cds4054;Parent=gene4126;Dbxref=GOA:P69986,InterPro:IPR006135,InterPro:IPR006307,InterPro:IPR029025,PDB:2JLH,PDB:2JLI,PDB:2JLJ,NCBI_GP:CAB54924.1;Name=CAB54924.1;Note=YPCD1.47%2C yscU%2C probable type III secretion protein%2C len: 354 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (354 aa)%2C fasta scores%3B opt: 2254 z-score: 3428.9 E(): 0%2C 100.0%25 identity in 354 aa overlap and to YSCU_YERPS (EMBL:L25667)%2C yscU%2C from Yersinia pseudotuberculosis plasmid pIB1. Highly similar to TR:Q56844 (EMBL:U08019)%2C yscU%2C from Yersinia enterocolitica (354 aa) (98.9%25 identity in 354 aa overlap). Similar to other bacterial type III secretion components e.g. SSAU_SALTY (EMBL:X99944)%2C ssaU%2C Salmonella typhimurium secretion system protein (352 aa) (37.3%25 identity in 357 aa overlap). Contains Pfam match to entry PF01312 Bac_export_2%2C FlhB HrpN YscU SpaS Family%2C score 674.40%2C E-value 5.8e-199;gbkey=CDS;gene=YPCD1.47;product=putative type III secretion protein;protein_id=CAB54924.1;transl_table=11
AL117189.1	EMBL	sequence_feature	33953	34978	.	+	.	ID=id10014;Note=Pfam match to entry PF01312 Bac_export_2%2C FlhB HrpN YscU SpaS Family%2C score 674.40%2C E-value 5.8e-199;gbkey=misc_feature;gene=YPCD1.47
AL117189.1	EMBL	gene	35593	35988	.	+	.	ID=gene4127;Name=YPCD1.48;gbkey=Gene;gene=YPCD1.48;gene_biotype=protein_coding;gene_synonym=virG
AL117189.1	EMBL	CDS	35593	35988	.	+	0	ID=cds4055;Parent=gene4127;Dbxref=InterPro:IPR013400,UniProtKB/TrEMBL:O68694,NCBI_GP:CAB54925.1;Name=CAB54925.1;Note=YPCD1.48%2C virG%2C probable Yop targeting lipoprotein%2C len: 131 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (131 aa)%2C fasta scores%3B opt: 861 z-score: 1683.7 E(): 0 99.2%25 identity in 131 aa overlap and to TR:Q56851 (EMBL:U21297)%2C virG%2C from Yersinia enterocolitica plasmid pYVE227 (131 aa). Weak similarity to EXSB_PSEAE (EMBL:M64975)%2C exsB%2C Pseudomonas aeruginosa exoenzyme S synthesis protein regulatory B (137 aa) (29.0%25 identity in 124 aa overlap). Contains appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=CDS;gene=YPCD1.48;product=putative Yop targeting lipoprotein;protein_id=CAB54925.1;transl_table=11
AL117189.1	EMBL	sequence_feature	35608	35640	.	+	.	ID=id10015;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=YPCD1.48
AL117189.1	EMBL	gene	36112	36927	.	+	.	ID=gene4128;Name=YPCD1.49;gbkey=Gene;gene=YPCD1.49;gene_biotype=protein_coding;gene_synonym=lcrF,virF
AL117189.1	EMBL	CDS	36112	36927	.	+	0	ID=cds4056;Parent=gene4128;Dbxref=GOA:P28808,InterPro:IPR003313,InterPro:IPR009057,InterPro:IPR014710,InterPro:IPR018060,InterPro:IPR018062,InterPro:IPR020449,NCBI_GP:CAB54926.1;Name=CAB54926.1;Note=YPCD1.49%2C lcrF%2C virF%2C probable thermoregulatory protein%2C len: 271 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (271 aa)%2C fasta scores%3B opt: 1786 z-score: 2916.8 E(): 0%2C 100.0%25 identity in 271 aa overlap. Highly similar to VIRF_YEREN (EMBL:M22781)%2C virF%2C from Yersinia enterocolitica plasmid pYV (271 aa) (97.8%25 identity in 271 aa overlap). Similar to EXSA_PSEAE (EMBL:M64975)%2C exsA%2C Pseudomonas aeruginosa exoenzyme S synthesis regulatory protein A (298 aa) (57.0%25 identity in 263 aa overlap). Contains Pfam match to entry PF00165 HTH_2%2C Bacterial regulatory helix-turn-helix proteins%2C araC family%2C score 123.30%2C E-value 4.5e-33 and PS00041 Bacterial regulatory proteins%2C araC family signature;gbkey=CDS;gene=YPCD1.49;product=putative thermoregulatory protein;protein_id=CAB54926.1;transl_table=11
AL117189.1	EMBL	sequence_feature	36649	36909	.	+	.	ID=id10016;Note=Pfam match to entry PF00165 HTH_2%2C Bacterial regulatory helix-turn-helix proteins%2C araC family%2C score 123.30%2C E-value 4.5e-33;gbkey=misc_feature;gene=YPCD1.49
AL117189.1	EMBL	sequence_feature	36760	36888	.	+	.	ID=id10017;Note=PS00041 Bacterial regulatory proteins%2C araC family signature;gbkey=misc_feature;gene=YPCD1.49
AL117189.1	EMBL	gene	37006	37104	.	+	.	ID=gene4129;Name=YPCD1.50;gbkey=Gene;gene=YPCD1.50;gene_biotype=protein_coding;gene_synonym=yscA
AL117189.1	EMBL	CDS	37006	37104	.	+	0	ID=cds4057;Parent=gene4129;Dbxref=GOA:O68693,NCBI_GP:CAB54927.1;Name=CAB54927.1;Note=YPCD1.50%2C yscA%2C hypothetical protein%2C len: 32 aa%3B improbable CDS identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (32 aa)%2C fasta scores%3B opt: 215 z-score: 473.9 E(): 4.2e-19%2C 100.0%25 identity in 32 aa overlap. Highly similar to YSCA_YEREN (EMBL:M74011)%2C yscA%2C from Yersinia enterocolitica plasmid pYV (32 aa) (87.5%25 identity in 32 aa overlap);gbkey=CDS;gene=YPCD1.50;product=hypothetical protein YPCD1.50;protein_id=CAB54927.1;transl_table=11
AL117189.1	EMBL	gene	37330	37743	.	+	.	ID=gene4130;Name=YPCD1.51;gbkey=Gene;gene=YPCD1.51;gene_biotype=protein_coding;gene_synonym=yscB
AL117189.1	EMBL	CDS	37330	37743	.	+	0	ID=cds4058;Parent=gene4130;Dbxref=GOA:Q56973,InterPro:IPR010261,InterPro:IPR013353,PDB:1XKP,NCBI_GP:CAB54928.1;Name=CAB54928.1;Note=YPCD1.51%2C yscB%2C hypothetical protein%2C len: 137 aa%3B unknown function%2C identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (137 aa)%2C fasta scores%3B opt: 891 z-score: 1671.9 E(): 0%2C 100.0%25 identity in 137 aa overlap. Highly similar to YSCB_YEREN (EMBL:M74011)%2C yscB%2C from Yersinia enterocolitica plasmid pYV (137 aa) (98.5%25 identity in 137 aa overlap). Similar to TR:P95430 (EMBL:U56077)%2C pscB%2C Pseudomonas aeruginosa exoenzyme S secretion protein (140 aa) (42.6%25 identity in 129 aa overlap);gbkey=CDS;gene=YPCD1.51;product=hypothetical protein YPCD1.51;protein_id=CAB54928.1;transl_table=11
AL117189.1	EMBL	gene	37749	39572	.	+	.	ID=gene4131;Name=YPCD1.52;gbkey=Gene;gene=YPCD1.52;gene_biotype=protein_coding;gene_synonym=yscC
AL117189.1	EMBL	CDS	37749	39572	.	+	0	ID=cds4059;Parent=gene4131;Dbxref=GOA:Q56974,InterPro:IPR003522,InterPro:IPR004845,InterPro:IPR004846,InterPro:IPR005644,UniProtKB/TrEMBL:Q56974,NCBI_GP:CAB54929.1;Name=CAB54929.1;Note=YPCD1.52%2C yscC%2C probable type III secretion protein%2C len: 607 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (607 aa)%2C fasta scores%3B opt: 3929 z-score: 5889.4 E(): 0%2C 100.0%25 identity in 607 aa overlap. Highly similar to YSCC_YEREN (EMBL:M74011)%2C yscC%2C from Yersinia enterocolitica plasmid pYV (607 aa) (97.9%25 identity in 607 aa overlap). Similar to many other bacterial secretion system components e.g. TR:P95431 (EMBL:U56077)%2C pscC%2C Pseudomonas aeruginosa exoenzyme S secretion protein (600 aa) (63.1%25 identity in 601 aa overlap). Contains Pfam match to entry PF00263 Bac_GSP proteins%2C Bacterial type II secretion system protein%2C score 618.20%2C E-value 4.9e-182 and PS00875 Bacterial type II secretion system protein D signature;gbkey=CDS;gene=YPCD1.52;product=putative type III secretion protein;protein_id=CAB54929.1;transl_table=11
AL117189.1	EMBL	sequence_feature	37872	39278	.	+	.	ID=id10018;Note=Pfam match to entry PF00263 Bac_GSPproteins%2C Bacterial type II secretion system protein%2C score 618.20%2C E-value 4.9e-182;gbkey=misc_feature;gene=YPCD1.52
AL117189.1	EMBL	sequence_feature	39111	39212	.	+	.	ID=id10019;Note=PS00875 Bacterial type II secretion system protein D signature;gbkey=misc_feature;gene=YPCD1.52
AL117189.1	EMBL	gene	39569	40828	.	+	.	ID=gene4132;Name=YPCD1.53;gbkey=Gene;gene=YPCD1.53;gene_biotype=protein_coding;gene_synonym=yscD
AL117189.1	EMBL	CDS	39569	40828	.	+	0	ID=cds4060;Parent=gene4132;Dbxref=GOA:Q56975,InterPro:IPR000253,InterPro:IPR008984,InterPro:IPR012843,PDB:4A0E,UniProtKB/TrEMBL:Q56975,NCBI_GP:CAB54930.1;Name=CAB54930.1;Note=YPCD1.53%2C yscD%2C probable type III secretion protein%2C len: 419 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (419 aa)%2C fasta scores%3B opt: 2758 z-score: 3668.1 E(): 0%2C 99.8%25 identity in 419 aa overlap. Highly similar to YSCD_YEREN (EMBL:M74011)%2C yscD%2C from Yersinia enterocolitica plasmid pYV (418 aa) (98.3%25 identity in 419 aa overlap). Similar to TR:P95432 (EMBL:U56077)%2C pscD%2C Pseudomonas aeruginosa exoenzyme S secretion protein (432 aa) (43.5%25 identity in 423 aa overlap);gbkey=CDS;gene=YPCD1.53;product=putative type III secretion protein;protein_id=CAB54930.1;transl_table=11
AL117189.1	EMBL	gene	40825	41025	.	+	.	ID=gene4133;Name=YPCD1.54;gbkey=Gene;gene=YPCD1.54;gene_biotype=protein_coding;gene_synonym=yscE
AL117189.1	EMBL	CDS	40825	41025	.	+	0	ID=cds4061;Parent=gene4133;Dbxref=GOA:O68692,InterPro:IPR012671,PDB:1ZW0,PDB:2P58,UniProtKB/TrEMBL:O68692,NCBI_GP:CAB54931.1;Name=CAB54931.1;Note=YPCD1.54%2C yscE%2C probable type III secretion protein%2C len: 66 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (66 aa)%2C fasta scores%3B opt: 416 z-score: 886.5 E(): 0%2C 100.0%25 identity in 66 aa overlap. Highly similar to YSCE_YEREN (EMBL:M74011)%2C yscE%2C from Yersinia enterocolitica plasmid pYV (66 aa) (93.9%25 identity in 66 aa overlap). Similar to ssaE (EMBL:AJ224892) from Salmonella typhimurium pathogenicity island 2 type III secretion system (80 aa) (32.3%25 identity in 62 aa overlap);gbkey=CDS;gene=YPCD1.54;product=putative type III secretion protein;protein_id=CAB54931.1;transl_table=11
AL117189.1	EMBL	gene	41026	41289	.	+	.	ID=gene4134;Name=YPCD1.55;gbkey=Gene;gene=YPCD1.55;gene_biotype=protein_coding;gene_synonym=yscF
AL117189.1	EMBL	CDS	41026	41289	.	+	0	ID=cds4062;Parent=gene4134;Dbxref=GOA:O68691,InterPro:IPR011841,InterPro:IPR021123,PDB:2P58,UniProtKB/TrEMBL:O68691,NCBI_GP:CAB54932.1;Name=CAB54932.1;Note=YPCD1.55%2C yscF%2C probable type III secretion protein%2C len: 87 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (87 aa)%2C fasta scores%3B opt: 560 z-score: 1079.3 E(): 0%2C 100.0%25 identity in 87 aa overlap. Highly similar to YSCF_YEREN (EMBL:M74011)%2C yscF%2C from Yersinia enterocolitica plasmid pYV (87 aa) (96.6%25 identity in 87 aa overlap). Similar to TR:P95434 (EMBL:U56077)%2C pscF%2C Pseudomonas aeruginosa exoenzyme S secretion protein (85 aa) (69.4%25 identity in 72 aa overlap) and PRGI_SALTY (EMBL:U21676)%2C prgI%2C Salmonella typhimurium invasion protein (80 aa) (31.0%25 identity in 71 aa overlap);gbkey=CDS;gene=YPCD1.55;product=putative type III secretion protein;protein_id=CAB54932.1;transl_table=11
AL117189.1	EMBL	gene	41291	41638	.	+	.	ID=gene4135;Name=YPCD1.56;gbkey=Gene;gene=YPCD1.56;gene_biotype=protein_coding;gene_synonym=yscG
AL117189.1	EMBL	CDS	41291	41638	.	+	0	ID=cds4063;Parent=gene4135;Dbxref=GOA:O68690,InterPro:IPR013348,PDB:2P58,UniProtKB/TrEMBL:O68690,NCBI_GP:CAB54933.1;Name=CAB54933.1;Note=YPCD1.56%2C yscG%2C probable type III secretion protein%2C len: 115 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (115 aa)%2C fasta scores%3B opt: 756 z-score: 1541.9 E(): 0%2C 100.0%25 identity in 115 aa overlap. Highly similar to YSCG_YEREN (EMBL:M74011)%2C yscG%2C from Yersinia enterocolitica plasmid pYV (115 aa) (93.9%25 identity in 115 aa overlap). Similar to TR:P95435 (EMBL:U56077)%2C pscG%2C Pseudomonas aeruginosa exoenzyme S secretion protein (115 aa) (55.1%25 identity in 107 aa overlap);gbkey=CDS;gene=YPCD1.56;product=putative type III secretion protein;protein_id=CAB54933.1;transl_table=11
AL117189.1	EMBL	gene	41635	42132	.	+	.	ID=gene4136;Name=YPCD1.57;gbkey=Gene;gene=YPCD1.57;gene_biotype=protein_coding;gene_synonym=lcrP,yopR,yscH
AL117189.1	EMBL	CDS	41635	42132	.	+	0	ID=cds4064;Parent=gene4136;Dbxref=GOA:P68590,InterPro:IPR013349,PDB:1Z21,NCBI_GP:CAB54934.1;Name=CAB54934.1;Note=YPCD1.57%2C yscH%2C yopR%2C lcrP%2C possible type III secretion protein%2C len: 165 aa%3B unknown function%2C identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (165 aa)%2C fasta scores%3B opt: 1042 z-score: 1903.3 E(): 0%2C 100.0%25 identity in 165 aa overlap and to YSCH_YERPS (EMBL:M83986)%2C lcrP%2C from Yersinia pseudotuberculosis plasmid pIB1. Highly similar to YSCH_YEREN (EMBL:M74011)%2C yscH%2C from Yersinia enterocolitica plasmid pYV (165 aa) (96.4%25 identity in 165 aa overlap). Similar to TR:P95436 (EMBL:U56077)%2C pscH%2C Pseudomonas aeruginosa exoenzyme S secretion protein (143 aa) (32.3%25 identity in 133 aa overlap);gbkey=CDS;gene=YPCD1.57;product=putative type III secretion protein;protein_id=CAB54934.1;transl_table=11
AL117189.1	EMBL	gene	42133	42480	.	+	.	ID=gene4137;Name=YPCD1.58;gbkey=Gene;gene=YPCD1.58;gene_biotype=protein_coding;gene_synonym=lcrO,yscI
AL117189.1	EMBL	CDS	42133	42480	.	+	0	ID=cds4065;Parent=gene4137;Dbxref=GOA:P69970,InterPro:IPR012670,InterPro:IPR021123,NCBI_GP:CAB54935.1;Name=CAB54935.1;Note=YPCD1.58%2C yscI%2C lcrO%2C probable type III secretion protein%2C len: 115 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (115 aa)%2C fasta scores%3B opt: 720 z-score: 1439.8 E(): 0%2C 100.0%25 identity in 115 aa overlap and to YSCI_YERPS (EMBL:M83986)%2C yscI%2C from Yersinia pseudotuberculosis plasmid pIB1. Highly similar to YSCI_YEREN (EMBL:M74011)%2C yscI%2C from Yersinia enterocolitica plasmid pYV (115 aa) (96.5%25 identity in 115 aa overlap). Similar to TR:P95437 (EMBL:U56077)%2C pscI%2C Pseudomonas aeruginosa exoenzyme S secretion protein (113 aa) (51.4%25 identity in 107 aa overlap);gbkey=CDS;gene=YPCD1.58;product=putative type III secretion protein;protein_id=CAB54935.1;transl_table=11
AL117189.1	EMBL	gene	42487	43221	.	+	.	ID=gene4138;Name=YPCD1.59;gbkey=Gene;gene=YPCD1.59;gene_biotype=protein_coding;gene_synonym=ylpB,yscJ
AL117189.1	EMBL	CDS	42487	43221	.	+	0	ID=cds4066;Parent=gene4138;Dbxref=GOA:P69972,InterPro:IPR003282,InterPro:IPR006182,NCBI_GP:CAB54936.1;Name=CAB54936.1;Note=YPCD1.59%2C yscJ%2C ylpB%2C probable type III secretion lipoprotein%2C len: 244 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (244 aa)%2C fasta scores%3B opt: 1516 z-score: 2669.8 E(): 0%2C 99.6%25 identity in 244 aa overlap and to YSCJ_YERPS (EMBL:M83986)%2C yscJ%2C from Yersinia pseudotuberculosis plasmid pIB1. Highly similar to YSCJ_YEREN (EMBL:M74011)%2C yscJ%2C from Yersinia enterocolitica plasmid pYV (244 aa) (99.2%25 identity in 244 aa overlap). Similar to many other bacterial type III secretion components e.g. TR:P95438 (EMBL:U56077)%2C pscJ%2C Pseudomonas aeruginosa exoenzyme S secretion protein (248 aa) (70.2%25 identity in 245 aa overlap). Contains appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=CDS;gene=YPCD1.59;product=putative type III secretion lipoprotein;protein_id=CAB54936.1;transl_table=11
AL117189.1	EMBL	sequence_feature	42511	42543	.	+	.	ID=id10020;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=YPCD1.59
AL117189.1	EMBL	gene	43221	43850	.	+	.	ID=gene4139;Name=YPCD1.60;gbkey=Gene;gene=YPCD1.60;gene_biotype=protein_coding;gene_synonym=yscK
AL117189.1	EMBL	CDS	43221	43850	.	+	0	ID=cds4067;Parent=gene4139;Dbxref=GOA:P69974,InterPro:IPR009510,NCBI_GP:CAB54937.1;Name=CAB54937.1;Note=YPCD1.60%2C yscK%2C probable type III secretion protein%2C len: 209 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (209 aa)%2C fasta scores%3B opt: 1447 z-score: 2245.2 E(): 0%2C 100.0%25 identity in 209 aa overlap and to YSCK_YERPS (EMBL:M83986)%2C yscK%2C from Yersinia pseudotuberculosis plasmid pIB1. Highly similar to YSCK_YEREN (EMBL:M74011)%2C yscK%2C from Yersinia enterocolitica plasmid pYV (209 aa) (99.0%25 identity in 209 aa overlap). Similar to TR:P95439 (EMBL:U56077)%2C pscK%2C Pseudomonas aeruginosa exoenzyme S secretion protein (206 aa) (34.0%25 identity in 203 aa overlap);gbkey=CDS;gene=YPCD1.60;product=putative type III secretion protein;protein_id=CAB54937.1;transl_table=11
AL117189.1	EMBL	gene	43796	44461	.	+	.	ID=gene4140;Name=YPCD1.61;gbkey=Gene;gene=YPCD1.61;gene_biotype=protein_coding;gene_synonym=yscL
AL117189.1	EMBL	CDS	43796	44461	.	+	0	ID=cds4068;Parent=gene4140;Dbxref=GOA:P69976,InterPro:IPR012842,InterPro:IPR018035,NCBI_GP:CAB54938.1;Name=CAB54938.1;Note=YPCD1.61%2C yscL%2C probable type III secretion protein%2C len: 221 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (221 aa)%2C fasta scores%3B opt: 1398 z-score: 2437.5 E(): 0%2C 100.0%25 identity in 221 aa overlap and to YSCL_YERPS (EMBL:M83986)%2C yscL%2C from Yersinia pseudotuberculosis plasmid pIB1. Highly similar to YSCL_YEREN (EMBL:M74011)%2C yscL%2C from Yersinia enterocolitica plasmid pYV (223 aa) (99.1%25 identity in 221 aa overlap). Similar to to several other bacterial type III secretion components e.g. TR:P95440 (EMBL:U56077)%2C pscL%2C Pseudomonas aeruginosa exoenzyme S secretion protein (221 aa) (56.6%25 identity in 205 aa overlap). There is more than one possible start codon%2C notably ATG (position 12) and TTG (position 32). Contains probable coiled-coil from 42 to 71 (30 residues%2C probability 0.86);gbkey=CDS;gene=YPCD1.61;product=putative type III secretion protein;protein_id=CAB54938.1;transl_table=11
AL117189.1	EMBL	gene	44686	45033	.	+	.	ID=gene4141;Name=YPCD1.62;gbkey=Gene;gene=YPCD1.62;gene_biotype=protein_coding;gene_synonym=lcrQ,yscM
AL117189.1	EMBL	CDS	44686	45033	.	+	0	ID=cds4069;Parent=gene4141;Dbxref=GOA:P69978,InterPro:IPR015103,NCBI_GP:CAB54939.1;Name=CAB54939.1;Note=YPCD1.62%2C yscM%2C lcrQ%2C probable type III secretion regulatory protein%2C len: 115 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (115 aa)%2C fasta scores%3B opt: 713 z-score: 1420.0 E(): 0%2C 100.0%25 identity in 115 aa overlap and to YSCM_YERPS (EMBL:M83986)%2C yscM%2C from Yersinia pseudotuberculosis plasmid pIB1. Highly similar to YSCM_YEREN (EMBL:M74011)%2C yscM%2C from Yersinia enterocolitica plasmid pYV (115 aa) (99.1%25 identity in 115 aa overlap) and TR:O54481 (EMBL:U94827)%2C yscM2%2C also from Y.enterocolitica (116 aa) (59.1%25 identity in 110 aa overlap). Similar to internal sequence of Yersinia spp. yopH e.g. YOPH_YEREN (EMBL:M30457) Y.enterocolitica protein tyrosine phosphatase (468 aa) (43.0%25 identity in 79 aa overlap);gbkey=CDS;gene=YPCD1.62;product=putative type III secretion regulatory protein;protein_id=CAB54939.1;transl_table=11
AL117189.1	EMBL	repeat_region	45496	46639	.	+	.	ID=id10021;Note=insertion element;gbkey=repeat_region
AL117189.1	EMBL	repeat_region	45496	45529	.	+	.	ID=id10022;Note=repeat 8%3B imperfect inverted repeat;gbkey=repeat_region
AL117189.1	EMBL	gene	45581	45847	.	+	.	ID=gene4142;Name=YPCD1.63;gbkey=Gene;gene=YPCD1.63;gene_biotype=protein_coding;gene_synonym=ORFA
AL117189.1	EMBL	CDS	45581	45847	.	+	0	ID=cds4070;Parent=gene4142;Dbxref=GOA:P69961,InterPro:IPR002514,InterPro:IPR009057,NCBI_GP:CAB54940.1;Name=CAB54940.1;Note=YPCD1.63%2C ORFA%2C possible transposase%2C len: 88 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (88 aa)%2C fasta scores%3B opt: 570 z-score: 734.9 E(): 0%2C 100.0%25 identity in 88 aa overlap and to LCRS_YERPS (EMBL:M83986)%2C lcrS%2C from Yersinia pseudotuberculosis plasmid pIB1. Highly similar to many hypothetical proteins found within insertion elements e.g. TR:O54331 (EMBL:U45993) Xanthomonas campestris insertion sequence IS1403 ORFA (87 aa) (52.9%25 identity in 87 aa overlap);gbkey=CDS;gene=YPCD1.63;product=putative transposase ORFA;protein_id=CAB54940.1;transl_table=11
AL117189.1	EMBL	sequence_feature	45836	45842	.	+	.	ID=id10023;Note=possible ribosome frameshift site;gbkey=misc_feature;gene=YPCD1.63
AL117189.1	EMBL	sequence_feature	45593	45953	.	+	.	ID=id10024;Note=similar to Burkholderia cepacia insertion sequence IS407 (EMBL:M81964) at DNA level;gbkey=misc_feature
AL117189.1	EMBL	gene	45871	46305	.	+	.	ID=gene4143;Name=YPCD1.64;gbkey=Gene;gene=YPCD1.64;gene_biotype=protein_coding;gene_synonym=ORFB
AL117189.1	EMBL	CDS	45871	46305	.	+	0	ID=cds4071;Parent=gene4143;Dbxref=NCBI_GP:CAB54941.1;Name=CAB54941.1;Note=YPCD1.64%2C ORFB%2C possible transposase%2C len: 144 aa%3B highly similar to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (134 aa)%2C fasta scores%3B opt: 897 z-score: 1625.8 E(): 0%2C 99.2%25 identity in 130 aa overlap. Similar to the N-terminus of TR:O54332 (EMBL:U45993) Xanthomonas campestris insertion sequence IS1403 ORFB (271 aa) (40.7%25 identity in 123 aa overlap). The following frameshifted ORF is similar to the remainder of this sequence;gbkey=CDS;gene=YPCD1.64;product=putative transposase ORFB;protein_id=CAB54941.1;transl_table=11
AL117189.1	EMBL	repeat_region	46081	46266	.	-	.	ID=id10025;Note=repeat 10%3B degenerate inverted repeat;gbkey=repeat_region
AL117189.1	EMBL	sequence_feature	46262	46449	.	+	.	ID=id10026;Note=similar to S.enteritidis insertion element IS1351 (EMBL:Z83734) at DNA level;gbkey=misc_feature
AL117189.1	EMBL	sequence_feature	46267	70300	.	+	.	ID=id10027;Note=identical to Y.pestis KIM5 plasmid pCD1 (EMBL:AF053946) from 70504 to 46491%2C except where noted;gbkey=misc_feature
AL117189.1	EMBL	sequence_feature	46267	58890	.	+	.	ID=id10028;Note=identical to Y.pestis KIM5 plasmid pCD1 (EMBL:AF074612) from 12608 to 1%2C except where noted;gbkey=misc_feature
AL117189.1	EMBL	gene	46302	46610	.	+	.	ID=gene4144;Name=YPCD1.65;gbkey=Gene;gene=YPCD1.65;gene_biotype=protein_coding;gene_synonym=ORFC
AL117189.1	EMBL	CDS	46302	46610	.	+	0	ID=cds4072;Parent=gene4144;Dbxref=GOA:Q9RI17,InterPro:IPR012337,UniProtKB/TrEMBL:Q9RI17,NCBI_GP:CAB54942.1;Name=CAB54942.1;Note=YPCD1.65%2C ORFC%2C possible transposase%2C len: 102 aa%3B identical to corresponding region within putative transposase Y0014 from Y.pestis KIM5 pCD1 (EMBL:AF074612) (123 aa). Similar to C-terminus of TR:O54332 (EMBL:U45993) Xanthomonas campestris insertion sequence IS1403 ORFB (271 aa) (35.3%25 identity in 150 aa overlap);gbkey=CDS;gene=YPCD1.65;product=putative transposase;protein_id=CAB54942.1;transl_table=11
AL117189.1	EMBL	repeat_region	46606	46639	.	-	.	ID=id10029;Note=repeat 8%3B imperfect inverted repeat;gbkey=repeat_region
AL117189.1	EMBL	gene	46623	46901	.	+	.	ID=gene4145;Name=YPCD1.66;gbkey=Gene;gene=YPCD1.66;gene_biotype=protein_coding;partial=true;start_range=.,46623
AL117189.1	EMBL	CDS	46623	46901	.	+	0	ID=cds4073;Parent=gene4145;Dbxref=GOA:Q9RI16,InterPro:IPR001207,UniProtKB/TrEMBL:Q9RI16,NCBI_GP:CAB54943.1;Name=CAB54943.1;Note=YPCD1.66%2C probable transposase remnant%2C len: 92 aa%3B highly similar to region of TR:O68779 (EMBL:AF053947)%2C putative transposase from from Y.pestis KIM5 pMT1 (402 aa). Contains Pfam match to entry PF00872 Transpo_mutator%2C Transposase%2C Mutator family%2C score 59.30%2C E-value 5.5e-16;gbkey=CDS;gene=YPCD1.66;partial=true;product=CAB54943.1;protein_id=CAB54943.1;start_range=.,46623;transl_table=11
AL117189.1	EMBL	sequence_feature	46626	46685	.	+	.	ID=id10030;Note=similar to Y.pestis insertion element IS285 element (EMBL:X78303) at DNA level;gbkey=misc_feature;gene=YPCD1.66
AL117189.1	EMBL	sequence_feature	46635	46829	.	+	.	ID=id10031;Note=Pfam match to entry PF00872 Transpo_mutator%2C Transposase%2C Mutator family%2C score 59.30%2C E-value 5.5e-16;gbkey=misc_feature;gene=YPCD1.66
AL117189.1	EMBL	gene	47122	48528	.	-	.	ID=gene4146;Name=YPCD1.67c;gbkey=Gene;gene=YPCD1.67c;gene_biotype=protein_coding;gene_synonym=yopH
AL117189.1	EMBL	CDS	47122	48528	.	-	0	ID=cds4074;Parent=gene4146;Dbxref=GOA:O68720,InterPro:IPR000242,InterPro:IPR000387,InterPro:IPR003546,InterPro:IPR015103,InterPro:IPR016130,InterPro:IPR029021,PDB:1HUF,PDB:1QZ0,PDB:2Y2F,PDB:2YDU,UniProtKB/TrEMBL:O68720,NCBI_GP:CAB54944.1;Name=CAB54944.1;Note=YPCD1.67c%2C yopH%2C probable protein-tyrosine phosphatase Yop effector%2C len: 468 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (468 aa)%2C fasta scores%3B opt: 3031 z-score: 3879.6 E(): 0%2C 100.0%25 identity in 468 aa overlap. Highly similar to YOPH_YERPS (EMBL:Y00551)%2C yopH%2C from Yersinia pseudotuberculosis plasmid pIB1 (468 aa) (99.8%25 identity in 468 aa overlap) and to YOPH_YEREN (EMBL:M30457)%2C yopH%2C from Yersinia enterocolitica plasmid pYV (468 aa) (99.1%25 identity in 468 aa overlap). Contains Pfam match to entry PF00102 Y_phosphatase%2C Protein-tyrosine phosphatase%2C score 211.90%2C E-value 9.6e-60 and PS00383 Tyrosine specific protein phosphatases active site;gbkey=CDS;gene=YPCD1.67c;product=putative protein-tyrosine phosphatase Yop effector;protein_id=CAB54944.1;transl_table=11
AL117189.1	EMBL	sequence_feature	47149	47862	.	-	.	ID=id10032;Note=Pfam match to entry PF00102 Y_phosphatase%2C Protein-tyrosine phosphatase%2C score 211.90%2C E-value 9.6e-60;gbkey=misc_feature;gene=YPCD1.67c
AL117189.1	EMBL	sequence_feature	47290	47328	.	-	.	ID=id10033;Note=PS00383 Tyrosine specific protein phosphatases active site;gbkey=misc_feature;gene=YPCD1.67c
AL117189.1	EMBL	gene	48811	49017	.	-	.	ID=gene4147;Name=YPCD1.68c;gbkey=Gene;gene=YPCD1.68c;gene_biotype=protein_coding;gene_synonym=Y0012
AL117189.1	EMBL	CDS	48811	49017	.	-	0	ID=cds4075;Parent=gene4147;Dbxref=UniProtKB/TrEMBL:Q7ARH7,NCBI_GP:CAB54945.1;Name=CAB54945.1;Note=YPCD1.68c%2C Y0012%2C hypothetical protein%2C len: 68 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF074612) (68 aa)%2C fasta scores%2C opt: 453 z-score: 678.5 E(): 2e-30 98.5%25 identity in 68 aa overlap. Similar to parts of hypothetical proteins e.g. Y4HP_RHISN (EMBL:X74068) Rhizobium sp. (strain NGR234) hypothetical protein (552 aa) (47.1%25 identity in 68 aa overlap);gbkey=CDS;gene=YPCD1.68c;product=CAB54945.1;protein_id=CAB54945.1;transl_table=11
AL117189.1	EMBL	gene	49044	49625	.	+	.	ID=gene4148;Name=YPCD1.69;gbkey=Gene;gene=YPCD1.69;gene_biotype=protein_coding;partial=true;start_range=.,49044
AL117189.1	EMBL	CDS	49044	49625	.	+	0	ID=cds4076;Parent=gene4148;Dbxref=GOA:Q9RI15,InterPro:IPR001584,InterPro:IPR012337,UniProtKB/TrEMBL:Q9RI15,NCBI_GP:CAB54946.1;Name=CAB54946.1;Note=YPCD1.69%2C probable transposase remnant%2C len: 193 aa%3B similar to TR:Q46612 (EMBL:X78052)%2C putative transposase ORFB from Enterobacter agglomerans IS1222 (276 aa) (44.0%25 identity in 191 aa overlap). The N-terminus and upstream ORFA are not present;gbkey=CDS;gene=YPCD1.69;partial=true;product=CAB54946.1;protein_id=CAB54946.1;start_range=.,49044;transl_table=11
AL117189.1	EMBL	repeat_region	49046	49657	.	+	.	ID=id10034;Note=repeat 3%2C IS1617 element%2C partial. Similar to Enterobacter agglomerans IS1222 (EMBL:X78052);gbkey=repeat_region
AL117189.1	EMBL	gene	49657	49755	.	-	.	ID=gene4149;Name=YPCD1.70c;gbkey=Gene;gene=YPCD1.70c;gene_biotype=protein_coding;partial=true;start_range=.,49657
AL117189.1	EMBL	CDS	49657	49755	.	-	0	ID=cds4077;Parent=gene4149;Dbxref=UniProtKB/TrEMBL:Q9RI14,NCBI_GP:CAB54947.1;Name=CAB54947.1;Note=YPCD1.70c%2C possible transposase remnant%2C len: 33 aa%3B similar to part of YIS5_SHISO (EMBL:X05955) Shigella sonnei insertion element IS630 hypothetical protein (343 aa) (60.6%25 identity in 33 aa overlap);gbkey=CDS;gene=YPCD1.70c;partial=true;product=CAB54947.1;protein_id=CAB54947.1;start_range=.,49657;transl_table=11
AL117189.1	EMBL	gene	50211	51077	.	-	.	ID=gene4150;Name=YPCD1.71c;gbkey=Gene;gene=YPCD1.71c;gene_biotype=protein_coding;gene_synonym=yopJ,yopP
AL117189.1	EMBL	CDS	50211	51077	.	-	0	ID=cds4078;Parent=gene4150;Dbxref=InterPro:IPR005083,UniProtKB/TrEMBL:Q9RI13,NCBI_GP:CAB54948.1;Name=CAB54948.1;Note=YPCD1.71c%2C yopP%2C yopJ%2C probable targeted effector protein%2C len: 288 aa%3B highly similar to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (288 aa)%2C fasta scores%3B opt: 1849 z-score: 3104.7 E(): 0%2C 99.3%25 identity in 288 aa overlap. Similar to TR:O52162 (EMBL:AF023202)%2C yopP%2C from Yersinia enterocolitica (288 aa) (93.1%25 identity in 288 aa overlap) and YOPJ_YERPS (EMBL:L33833)%2C yopP%2C from Yersinia pseudotuberculosis plasmid pIB1 (264 aa) (96.8%25 identity in 250 aa overlap). The difference in length is due to a frameshift in the Y.pseudotuberculosis sequence. Also similar to TR:O30621 (EMBL:AF013573)%2C avrA%2C Salmonella typhimurium secreted protein (301 aa) (56.7%25 identity in 289 aa overlap);gbkey=CDS;gene=YPCD1.71c;product=putative targeted effector protein;protein_id=CAB54948.1;transl_table=11
AL117189.1	EMBL	sequence_feature	50462	50462	.	+	.	ID=id10035;Note=difference: T is C in EMBL:AF053946 and in EMBL:AF074612;gbkey=misc_feature
AL117189.1	EMBL	sequence_feature	50547	50547	.	+	.	ID=id10036;Note=difference: A is C in EMBL:AF053946 and in EMBL:AF074612;gbkey=misc_feature
AL117189.1	EMBL	sequence_feature	51249	51249	.	+	.	ID=id10037;Note=difference: G is A in EMBL:AF053946 and in EMBL:AF074612;gbkey=misc_feature
AL117189.1	EMBL	gene	51473	53671	.	-	.	ID=gene4151;Name=YPCD1.72c;gbkey=Gene;gene=YPCD1.72c;gene_biotype=protein_coding;gene_synonym=ypkA
AL117189.1	EMBL	CDS	51473	53671	.	-	0	ID=cds4079;Parent=gene4151;Dbxref=GOA:Q9RI12,InterPro:IPR000719,InterPro:IPR003547,InterPro:IPR008271,InterPro:IPR011009,InterPro:IPR019093,NCBI_GP:CAB54949.1;Name=CAB54949.1;Note=YPCD1.72c%2C ypkA%2C probable targeted effector protein kinase%2C len: 732 aa%3B highly similar to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (732 aa)%2C fasta scores%3B opt: 4736 z-score: 6189.9 E(): 0%2C 99.9%25 identity in 732 aa overlap and to YPKA_YERPS (EMBL:X69439)%2C ypkA%2C from Yersinia pseudotuberculosis plasmid pIB1 (732 aa) (99.7%25 identity in 732 aa overlap). Similar to TR:Q56921 (EMBL:U59895)%2C ypkA%2C from Yersinia enterocolitica plasmid pVY (728 aa) (96.3%25 identity in 729 aa overlap) and TR:O85239 (EMBL:AF054978)%2C yopO%2C from Y.enterocolitica plasmid pVY (729 aa) (97.0%25 identity in 729 aa overlap). Contains PS00108 Serine/Threonine protein kinases active-site signature. Contains probable coiled-coil from 594 to 631 (38 residues%2C probability 0.94). Contains a {ctg}4 and a c{8} repeat;gbkey=CDS;gene=YPCD1.72c;product=putative targeted effector protein kinase;protein_id=CAB54949.1;transl_table=11
AL117189.1	EMBL	sequence_feature	52838	52876	.	-	.	ID=id10038;Note=PS00108 Serine/Threonine protein kinases active-site signature;gbkey=misc_feature;gene=YPCD1.72c
AL117189.1	EMBL	sequence_feature	51732	51732	.	+	.	ID=id10039;Note=difference: C is T in EMBL:AF053946 and in EMBL:AF074612;gbkey=misc_feature
AL117189.1	EMBL	repeat_region	52267	52274	.	+	.	ID=id10040;Note=(c)8;gbkey=repeat_region
AL117189.1	EMBL	gene	53679	54128	.	-	.	ID=gene4152;Name=YPCD1.73c;gbkey=Gene;gene=YPCD1.73c;gene_biotype=protein_coding;gene_synonym=Y0008
AL117189.1	EMBL	CDS	53679	54128	.	-	0	ID=cds4080;Parent=gene4152;Dbxref=GOA:Q9RI11,InterPro:IPR010261,UniProtKB/TrEMBL:Q9RI11,NCBI_GP:CAB54950.1;Name=CAB54950.1;Note=YPCD1.73c%2C Y0008%2C hypothetical protein%2C len: 149 aa%3B unknown function%2C highly similar to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF074612)%2C Y0008%2C hypothetical protein (142 aa)%2C fasta scores%3B opt: 857 z-score: 1651.9 E(): 0%2C 93.6%25 identity in 140 aa overlap and to TR:O85238 (EMBL:AF054978) hypothetical protein from Yersinia enterocolitica plasmid pVY (155 aa) (92.9%25 identity in 155 aa overlap);gbkey=CDS;gene=YPCD1.73c;product=hypothetical protein YPCD1.73c;protein_id=CAB54950.1;transl_table=11
AL117189.1	EMBL	sequence_feature	53722	53732	.	+	.	ID=id10041;Note=difference: AGTTCCTGCTG is absent from EMBL:AF053946 and from EMBL:AF074612;gbkey=misc_feature
AL117189.1	EMBL	sequence_feature	54237	54237	.	+	.	ID=id10042;Note=difference: T is G in EMBL:AF053946 and in EMBL:AF074612;gbkey=misc_feature
AL117189.1	EMBL	repeat_region	54366	54599	.	+	.	ID=id10043;Note=repeat 4%2C similar to S.dysenteriae insertion sequence IS911;gbkey=repeat_region
AL117189.1	EMBL	repeat_region	54367	54699	.	+	.	ID=id10044;Note=compound repeat 2;gbkey=repeat_region
AL117189.1	EMBL	gene	54368	54484	.	-	.	ID=gene4153;Name=YPCD1.74c;gbkey=Gene;gene=YPCD1.74c;gene_biotype=protein_coding;partial=true;start_range=.,54368
AL117189.1	EMBL	CDS	54368	54484	.	-	0	ID=cds4081;Parent=gene4153;Dbxref=UniProtKB/TrEMBL:Q9RI10,NCBI_GP:CAB54951.1;Name=CAB54951.1;Note=YPCD1.74c%2C duplicated N-terminus of upstream nuc gene%2C len: 39 aa;gbkey=CDS;gene=YPCD1.74c;partial=true;product=CAB54951.1;protein_id=CAB54951.1;start_range=.,54368;transl_table=11
AL117189.1	EMBL	gene	54541	54693	.	-	.	ID=gene4154;Name=YPCD1.75c;gbkey=Gene;gene=YPCD1.75c;gene_biotype=protein_coding;partial=true;start_range=.,54541
AL117189.1	EMBL	CDS	54541	54693	.	-	0	ID=cds4082;Parent=gene4154;Dbxref=GOA:Q9RI09,InterPro:IPR001584,InterPro:IPR012337,UniProtKB/TrEMBL:Q9RI09,NCBI_GP:CAB54952.1;Name=CAB54952.1;Note=YPCD1.75c%2C possible transposase remnant%2C len: 51 aa%3B similar to parts of transposases e.g. (EMBL:AJ132945) Yersinia enterocolitica IS1329 transposase B (249 aa) (54.9%25 identity in 51 aa overlap);gbkey=CDS;gene=YPCD1.75c;partial=true;product=CAB54952.1;protein_id=CAB54952.1;start_range=.,54541;transl_table=11
AL117189.1	EMBL	repeat_region	54563	54699	.	+	.	ID=id10045;Note=repeat 5;gbkey=repeat_region
AL117189.1	EMBL	pseudogene	55577	55744	.	-	.	ID=gene4155;Name=YPCD1.76c;gbkey=Gene;gene=YPCD1.76c;gene_biotype=pseudogene;pseudo=true
AL117189.1	EMBL	CDS	55577	55744	.	-	0	ID=cds4083;Parent=gene4155;Note=YPCD1.76c%2C possible pseudogene%2C len: 168 bp%3B similar to region of YPRR_ECOLI (EMBL:M26840)%2C repA4%2C E.coli hypothetical protein from IncFII plasmid NR1;gbkey=CDS;gene=YPCD1.76c;pseudo=true;transl_table=11
AL117189.1	EMBL	repeat_region	55733	55747	.	-	.	ID=id10046;Note=(ccccg)3;gbkey=repeat_region
AL117189.1	EMBL	sequence_feature	55733	55737	.	+	.	ID=id10047;Note=difference: CGGGG is absent from EMBL:AF053946 and from EMBL:AF074612;gbkey=misc_feature
AL117189.1	EMBL	sequence_feature	55839	55839	.	+	.	ID=id10048;Note=difference: G is A in EMBL:AF053946 and in EMBL:AF074612;gbkey=misc_feature
AL117189.1	EMBL	sequence_feature	55970	56120	.	-	.	ID=id10049;Note=similar to E.coli oriR sequence (EMBL:X70131) (167 bp)%2C fasta scores%3B opt: 356 z-score:64.7 E(): 0.0%2C 70.00%25 identity in 160 nt overlap;gbkey=misc_feature
AL117189.1	EMBL	gene	56291	57157	.	-	.	ID=gene4156;Name=YPCD1.77c;gbkey=Gene;gene=YPCD1.77c;gene_biotype=protein_coding;gene_synonym=repA,repA1
AL117189.1	EMBL	CDS	56291	57157	.	-	0	ID=cds4084;Parent=gene4156;Dbxref=GOA:Q9R3G9,InterPro:IPR003446,InterPro:IPR017837,UniProtKB/TrEMBL:Q9R3G9,NCBI_GP:CAB54954.1;Name=CAB54954.1;Note=YPCD1.77c%2C repA%2C repA1%2C probable replication initiation protein%2C len: 288 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (288 aa)%2C fasta scores%3B opt: 1886 z-score: 3048.8 E(): 0%2C 99.7%25 identity in 288 aa overlap. Highly similar to many e.g. REP2_ECOLI (EMBL:M26840)%2C repA%2C E.coli replication initiation protein from incFII plasmids (285 aa) (77.6%25 identity in 281 aa overlap);gbkey=CDS;gene=YPCD1.77c;product=putative replication initiation protein;protein_id=CAB54954.1;transl_table=11
AL117189.1	EMBL	gene	57150	57224	.	-	.	ID=gene4157;Name=YPCD1.78c;gbkey=Gene;gene=YPCD1.78c;gene_biotype=protein_coding;gene_synonym=tap
AL117189.1	EMBL	CDS	57150	57224	.	-	0	ID=cds4085;Parent=gene4157;Dbxref=InterPro:IPR012605,UniProtKB/TrEMBL:Q7ARH6,NCBI_GP:CAB54955.1;Name=CAB54955.1;Note=YPCD1.78c%2C tap%2C probable repA translation protein%2C len: 24 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (24 aa). Similar to other tap proteins e.g. TR:P72429 (EMBL:U64797)%2C tap%2C from Salmonella enteritidis virulence plasmid (25 aa);gbkey=CDS;gene=YPCD1.78c;product=putative repA translation protein;protein_id=CAB54955.1;transl_table=11
AL117189.1	EMBL	transcript	57257	57331	.	-	.	ID=rna107;Note=possible copA%2C similar to E. coli region of replication control gene in plasmid R6-5 (EMBL:V00319) encoding RNA-I transcript%2C fasta scores%3B opt: 275 z-score:60.0 E(): 0.0%2C 88.16%25 identity in 76 nt overlap;gbkey=misc_RNA
AL117189.1	EMBL	exon	57257	57331	.	-	.	ID=id10050;Parent=rna107;Note=possible copA%2C similar to E. coli region of replication control gene in plasmid R6-5 (EMBL:V00319) encoding RNA-I transcript%2C fasta scores%3B opt: 275 z-score:60.0 E(): 0.0%2C 88.16%25 identity in 76 nt overlap;gbkey=misc_RNA
AL117189.1	EMBL	gene	57466	57720	.	-	.	ID=gene4158;Name=YPCD1.79c;gbkey=Gene;gene=YPCD1.79c;gene_biotype=protein_coding;gene_synonym=copB,repA2,repB
AL117189.1	EMBL	CDS	57466	57720	.	-	0	ID=cds4086;Parent=gene4158;Dbxref=InterPro:IPR019661,UniProtKB/TrEMBL:Q7ARH5,NCBI_GP:CAB54956.1;Name=CAB54956.1;Note=YPCD1.79c%2C repB%2C repA2%2C copB%2C probable replication transcriptional regulator%2C len: 84 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (84 aa)%2C fasta scores%3B opt: 529 z-score: 1067.5 E(): 0%2C 100.0%25 identity in 84 aa overlap. Highly similar to many e.g. CPB2_ECOLI (EMBL:M26840)%2C copB%2C E.coli transcriptional regulator from incFII plasmids (84 aa) (54.9%25 identity in 82 aa overlap);gbkey=CDS;gene=YPCD1.79c;product=putative replication transcriptional regulator;protein_id=CAB54956.1;transl_table=11
AL117189.1	EMBL	pseudogene	57861	58106	.	-	.	ID=gene4159;Name=YPCD1.80c;gbkey=Gene;gene=YPCD1.80c;gene_biotype=pseudogene;pseudo=true
AL117189.1	EMBL	CDS	57861	58106	.	-	0	ID=cds4087;Parent=gene4159;Note=YPCD1.80c%2C possible pseudogene%2C len: 246 bp%3B similar to several e.g. TR:O07482 (EMBL:Y13308) from a Yersinia enterocolitica plasmid (182 aa). Similarity ends at junction with upstream repeat element;gbkey=CDS;gene=YPCD1.80c;product=putative pseudogene;pseudo=true;transl_table=11
AL117189.1	EMBL	repeat_region	58108	58301	.	+	.	ID=id10051;Note=repeat 4%2C similar to S.dysenteriae insertion sequence IS911;gbkey=repeat_region
AL117189.1	EMBL	repeat_region	58109	59344	.	+	.	ID=id10052;Note=compound repeat 2%2C IS1616 element;gbkey=repeat_region
AL117189.1	EMBL	gene	58307	58540	.	+	.	ID=gene4160;Name=YPCD1.81;end_range=58540,.;gbkey=Gene;gene=YPCD1.81;gene_biotype=protein_coding;partial=true;start_range=.,58307
AL117189.1	EMBL	CDS	58307	58540	.	+	0	ID=cds4088;Parent=gene4160;Dbxref=GOA:Q9RI08,InterPro:IPR001584,InterPro:IPR012337,UniProtKB/TrEMBL:Q9RI08,NCBI_GP:CAB54958.1;Name=CAB54958.1;Note=YPCD1.81%2C possible transposase remnant%2C len: 78 aa%3B similar to parts of transposases e.g. (EMBL:AJ132945) Yersinia enterocolitica IS1329 transposase B (249 aa) (46.8%25 identity in 77 aa overlap);end_range=58540,.;gbkey=CDS;gene=YPCD1.81;partial=true;product=CAB54958.1;protein_id=CAB54958.1;start_range=.,58307;transl_table=11
AL117189.1	EMBL	repeat_region	58403	58539	.	-	.	ID=id10053;Note=repeat 5;gbkey=repeat_region
AL117189.1	EMBL	gene	58523	58930	.	-	.	ID=gene4161;Name=YPCD1.82c;gbkey=Gene;gene=YPCD1.82c;gene_biotype=protein_coding;gene_synonym=Y0001
AL117189.1	EMBL	CDS	58523	58930	.	-	0	ID=cds4089;Parent=gene4161;Dbxref=InterPro:IPR025948,UniProtKB/TrEMBL:Q9RI07,NCBI_GP:CAB54959.1;Name=CAB54959.1;Note=YPCD1.82c%2C Y0001%2C hypothetical protein%2C len: 135 aa%3B unknown function%2C identical to ORF Y0001 (103 aa) in Y.pestis KIM5 pCD1 (EMBL:AF074612)%2C but with a putative start codon 32 codons upstream%2C fasta scores%3B opt: 715 z-score: 1351.2 E(): 0%2C 99.0%25 identity in 103 aa overlap. Shows similarity to the N-terminal half of TRA5_ECOLI (EMBL:X02311) E.coli IS3 transposase (288 aa) (30.5%25 identity in 154 aa overlap);gbkey=CDS;gene=YPCD1.82c;product=hypothetical protein YPCD1.82c;protein_id=CAB54959.1;transl_table=11
AL117189.1	EMBL	sequence_feature	58841	70300	.	+	.	ID=id10054;Note=identical to Y.pestis KIM5 plasmid pCD1 (EMBL:AF074612) from 70559 to 59099%2C except where noted;gbkey=misc_feature
AL117189.1	EMBL	repeat_region	58855	59249	.	+	.	ID=id10055;Note=repeat 6;gbkey=repeat_region
AL117189.1	EMBL	gene	58954	59277	.	-	.	ID=gene4162;Name=YPCD1.83c;gbkey=Gene;gene=YPCD1.83c;gene_biotype=protein_coding;gene_synonym=Y0094
AL117189.1	EMBL	CDS	58954	59277	.	-	0	ID=cds4090;Parent=gene4162;Dbxref=GOA:Q9R323,InterPro:IPR002514,InterPro:IPR009057,UniProtKB/TrEMBL:Q9R323,NCBI_GP:CAB54960.1;Name=CAB54960.1;Note=YPCD1.83c%2C Y0094%2C hypothetical protein%2C len: 107 aa%3B identical to ORF Y0094 and highly similar to ORF Y0068 from Y.pestis KIM5 pCD1 (EMBL:AF074612) (107 aa) (98.1%25 identity in 107 aa overlap). Shows similarity to YI91_SHIDY (EMBL:X17613) Shigella dysenteriae hypothetical protein from transposable element IS911 (112 aa) (43.5%25 identity in 92 aa overlap). Contains probable helix-turn-helix motif at aa 31-52 (Score 1833%2C +5.43 SD). Contains probable coiled-coil from 70 to 100 (31 residues%2C probability 1.00);gbkey=CDS;gene=YPCD1.83c;product=hypothetical protein YPCD1.83c;protein_id=CAB54960.1;transl_table=11
AL117189.1	EMBL	sequence_feature	59013	59018	.	-	.	ID=id10056;Note=possible ribosome frameshift site;gbkey=misc_feature;gene=YPCD1.83c
AL117189.1	EMBL	gene	59443	59934	.	-	.	ID=gene4163;Name=YPCD1.84c;gbkey=Gene;gene=YPCD1.84c;gene_biotype=protein_coding;gene_synonym=Y0093
AL117189.1	EMBL	CDS	59443	59934	.	-	0	ID=cds4091;Parent=gene4163;Dbxref=GOA:Q9R361,InterPro:IPR027417,UniProtKB/TrEMBL:Q9R361,NCBI_GP:CAB54961.1;Name=CAB54961.1;Note=YPCD1.84c%2C Y0093%2C hypothetical protein%2C len: 163 aa%3B identical to corresponding CDS Y0093 from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612)%2C fasta scores%3B opt: 1080 z-score: 2044.4 E(): 0%2C 99.4%25 identity in 163 aa overlap. Similar to a C-terminal region within TRI2_ECOLI (EMBL:X55815)%2C traI%2C E.coli DNA helicase I (1756 aa) (49.6%25 identity in 123 aa overlap) and to a region in the N-terminal half of putative DNA traI from E.coli plasmid pO157 (432 aa) (49.5%25 identity in 103 aa overlap);gbkey=CDS;gene=YPCD1.84c;product=hypothetical protein YPCD1.84c;protein_id=CAB54961.1;transl_table=11
AL117189.1	EMBL	sequence_feature	59888	59892	.	+	.	ID=id10057;Note=difference: GCCAT is absent from EMBL:AF053946;gbkey=misc_feature
AL117189.1	EMBL	repeat_region	59944	60338	.	-	.	ID=id10058;Note=repeat 6;gbkey=repeat_region
AL117189.1	EMBL	repeat_region	59944	60338	.	-	.	ID=id10059;Note=compound repeat 2%2C IS1616 element%2C partial;gbkey=repeat_region
AL117189.1	EMBL	gene	59946	60239	.	+	.	ID=gene4164;Name=YPCD1.85;gbkey=Gene;gene=YPCD1.85;gene_biotype=protein_coding;partial=true;start_range=.,59946
AL117189.1	EMBL	CDS	59946	60239	.	+	0	ID=cds4092;Parent=gene4164;Dbxref=GOA:Q9RI06,InterPro:IPR002514,InterPro:IPR009057,UniProtKB/TrEMBL:Q9RI06,NCBI_GP:CAB54962.1;Name=CAB54962.1;Note=YPCD1.85%2C possible transposase remnant%2C len: 97 aa%3B identical to YPCD1.83c and ORF Y0094 from Y.pestis KIM5 pCD1 (EMBL:AF074612) but missing 10 N-terminal residues. Similar to e.g. YI91_SHIDY (EMBL:X17613) ORF from Shigella dysenteriae IS911 (112 aa)%2C fasta scores%3B opt: 244 z-score: 424.6 E(): 2.3e-16%2C 42.7%25 identity in 89 aa overlap;gbkey=CDS;gene=YPCD1.85;partial=true;product=CAB54962.1;protein_id=CAB54962.1;start_range=.,59946;transl_table=11
AL117189.1	EMBL	pseudogene	60307	60495	.	-	.	ID=gene4165;Name=YPCD1.86c;gbkey=Gene;gene=YPCD1.86c;gene_biotype=pseudogene;pseudo=true
AL117189.1	EMBL	CDS	60307	60495	.	-	0	ID=cds4093;Parent=gene4165;Note=YPCD1.86c%2C possible pseudogene%2C len: 189 bp%3B highly similar to the N-termini of TR:O85268 (EMBL:AF056092) hypothetical protein from Yersinia enterocolitica plasmid pYV (291 aa)%2C TR:O30646 (EMBL:AF013775)%2C pagO%2C hypothetical membrane protein from Salmonella typhimurium chromosome (304 aa) and YTR1_BUCAP (EMBL:Z19055) Buchnera aphidicola hypothetical protein near the trp operon (300 aa);gbkey=CDS;gene=YPCD1.86c;product=putative pseudogene;pseudo=true;transl_table=11
AL117189.1	EMBL	pseudogene	60568	61632	.	-	.	ID=gene4166;Name=YPCD1.87c;gbkey=Gene;gene=YPCD1.87c;gene_biotype=pseudogene;gene_synonym=yadA,yopA;pseudo=true
AL117189.1	EMBL	CDS	60568	61632	.	-	0	ID=cds4094;Parent=gene4166;Note=YPCD1.87c%2C yadA%2C yopA%2C probable yadA invasin pseudogene%2C len: 1065 aa%3B highly similar to YADA_YERPS (EMBL:X13883)%2C yadA%2C from Yersinia pseudotuberculosis plasmid pIB1%2C missing the N-terminal 79 amino acids due a frameshift;gbkey=CDS;gene=YPCD1.87c;product=putative yadA invasin pseudogene;pseudo=true;transl_table=11
AL117189.1	EMBL	pseudogene	61632	61868	.	-	.	ID=gene4167;Name=YPCD1.88c;gbkey=Gene;gene=YPCD1.88c;gene_biotype=pseudogene;gene_synonym=yadA';pseudo=true
AL117189.1	EMBL	CDS	61632	61868	.	-	0	ID=cds4095;Parent=gene4167;Note=YPCD1.88c%2C yadA'%2C probable yadA invasin pseudogene N-terminus%2C len: 237 bp%3B highly similar to the N-terminus of YADA_YERPS (EMBL:X13883)%2C yadA%2C from Yersinia pseudotuberculosis plasmid pIB1 until the frameshift;gbkey=CDS;gene=YPCD1.88c;product=putative yadA invasin pseudogene N-terminus;pseudo=true;transl_table=11
AL117189.1	EMBL	gene	62474	62854	.	+	.	ID=gene4168;Name=YPCD1.89;gbkey=Gene;gene=YPCD1.89;gene_biotype=protein_coding
AL117189.1	EMBL	CDS	62474	62854	.	+	0	ID=cds4096;Parent=gene4168;Dbxref=UniProtKB/TrEMBL:O68712,NCBI_GP:CAB54966.1;Name=CAB54966.1;Note=YPCD1.89%2C possible transposase remnant%2C len: 126 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946) (126 aa)%2C fasta scores%3B opt: 869 z-score: 1640.5 E(): 0%2C 99.2%25 identity in 126 aa overlap. Similar to TR:O31218 (EMBL:AF034211) Desulfovibrio vulgaris insertion sequence ISD1 transposase ORFB (fragment) (310 aa);gbkey=CDS;gene=YPCD1.89;product=CAB54966.1;protein_id=CAB54966.1;transl_table=11
AL117189.1	EMBL	repeat_region	62474	62854	.	+	.	ID=id10060;Note=similar to ISD1 from Desulfovibrio vulgaris (EMBL:AF034211);gbkey=repeat_region;gene=YPCD1.89
AL117189.1	EMBL	repeat_region	62808	65872	.	+	.	ID=id10061;Note=Tn1000 insertion element%2Csimilar to E.coli Tn1000 element (EMBL:X60200) at DNA level;gbkey=repeat_region
AL117189.1	EMBL	gene	62851	65166	.	-	.	ID=gene4169;Name=YPCD1.90c;gbkey=Gene;gene=YPCD1.90c;gene_biotype=protein_coding;gene_synonym=tnpA
AL117189.1	EMBL	CDS	62851	65166	.	-	0	ID=cds4097;Parent=gene4169;Dbxref=GOA:Q7ARH3,InterPro:IPR002513,InterPro:IPR025296,UniProtKB/TrEMBL:Q7ARH3,NCBI_GP:CAB54967.1;Name=CAB54967.1;Note=YPCD1.90c%2C tnpA%2C probable transposase%2C len: 771 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946) (771 aa)%2C fasta scores%3B opt: 5136 z-score: 6916.0 E(): 0%2C 100.0%25 identity in 771 aa overlap. Highly similar to TR:Q00037 (EMBL:X60200)%2C tnpA%2C E.coli transposon gamma-delta transposase (Tn1000) (1002 aa) (71.2%25 identity in 1002 aa overlap). The difference in length is accounted for by a large internal deletion from the Y.pestis CDS;gbkey=CDS;gene=YPCD1.90c;product=putative transposase;protein_id=CAB54967.1;transl_table=11
AL117189.1	EMBL	sequence_feature	63805	63805	.	+	.	ID=id10062;Note=difference: C is T in EMBL:AF074612;gbkey=misc_feature
AL117189.1	EMBL	gene	65330	65881	.	+	.	ID=gene4170;Name=YPCD1.91;gbkey=Gene;gene=YPCD1.91;gene_biotype=protein_coding;gene_synonym=tnpR
AL117189.1	EMBL	CDS	65330	65881	.	+	0	ID=cds4098;Parent=gene4170;Dbxref=GOA:O68710,InterPro:IPR006118,InterPro:IPR006119,InterPro:IPR006120,InterPro:IPR009057,UniProtKB/TrEMBL:O68710,NCBI_GP:CAB54968.1;Name=CAB54968.1;Note=YPCD1.91%2C tnpR%2C probable resolvase%2C len: 183 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946) (183 aa)%2C fasta scores%3B opt: 1133 z-score: 1830.8 E(): 0%2C 100.0%25 identity in 183 aa overlap. Highly similar to TNP1_ECOLI (EMBL:X60200)%2C tnpR%2C E.coli transposon gamma-delta resolvase (Tn1000) (183 aa) (85.7%25 identity in 182 aa overlap). Contains Pfam match to entry PF00239 recombinase%2C Site-specific recombinases%2C score 299.30%2C E-value 4.6e-86%2C PS00397 Site-specific recombinases active site and PS00398 Site-specific recombinases signature 2. Contains probable helix-turn-helix motif at aa 160-181 (Score 2072%2C +6.24 SD);gbkey=CDS;gene=YPCD1.91;product=putative resolvase;protein_id=CAB54968.1;transl_table=11
AL117189.1	EMBL	sequence_feature	65339	65860	.	+	.	ID=id10063;Note=Pfam match to entry PF00239 recombinase%2C Site-specific recombinases%2C score 299.30%2C E-value 4.6e-86;gbkey=misc_feature;gene=YPCD1.91
AL117189.1	EMBL	sequence_feature	65345	65371	.	+	.	ID=id10064;Note=PS00397 Site-specific recombinases active site;gbkey=misc_feature;gene=YPCD1.91
AL117189.1	EMBL	sequence_feature	65501	65539	.	+	.	ID=id10065;Note=PS00398 Site-specific recombinases signature 2;gbkey=misc_feature;gene=YPCD1.91
AL117189.1	EMBL	gene	66503	66832	.	+	.	ID=gene4171;Name=YPCD1.92;gbkey=Gene;gene=YPCD1.92;gene_biotype=protein_coding;gene_synonym=Y0085
AL117189.1	EMBL	CDS	66503	66832	.	+	0	ID=cds4099;Parent=gene4171;Dbxref=UniProtKB/TrEMBL:Q7ARH1,NCBI_GP:CAB54969.1;Name=CAB54969.1;Note=YPCD1.92%2C Y0085%2C hypothetical protein%2C len: 109 aa%3B unknown function%2C identical to corresponding CDS Y0085 from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (109 aa)%2C fasta scores%3B opt: 695 z-score: 1257.6 E(): 0%2C 100.0%25 identity in 109 aa overlap. Contains probable coiled-coil from 16 to 47 (32 residues%2C probability 0.92);gbkey=CDS;gene=YPCD1.92;product=hypothetical protein YPCD1.92;protein_id=CAB54969.1;transl_table=11
AL117189.1	EMBL	repeat_region	66851	68064	.	+	.	ID=id10066;Note=IS1617 element;gbkey=repeat_region
AL117189.1	EMBL	repeat_region	66851	66890	.	+	.	ID=id10067;Note=repeat 9%3B imperfect inverted repeat;gbkey=repeat_region
AL117189.1	EMBL	gene	66932	67198	.	+	.	ID=gene4172;Name=YPCD1.93;gbkey=Gene;gene=YPCD1.93;gene_biotype=protein_coding;gene_synonym=Y0084
AL117189.1	EMBL	CDS	66932	67198	.	+	0	ID=cds4100;Parent=gene4172;Dbxref=GOA:O68709,InterPro:IPR002514,InterPro:IPR009057,UniProtKB/TrEMBL:O68709,NCBI_GP:CAB54970.1;Name=CAB54970.1;Note=YPCD1.93%2C Y0084%2C probable transposase%2C len: 88 aa%3B identical to corresponding CDS Y0085 from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (88 aa)%2C fasta scores%3B opt: 564 z-score: 1102.2 E(): 0%2C 100.0%25 identity in 88 aa overlap. Similar to many others e.g. YIA3_RHISP (EMBL:X06616) Rhizobium sp. insertion element ISR1 (88 aa) (53.4%25 identity in 88 aa overlap). Contains probable helix-turn-helix motif at aa 23-44 (Score 1884%2C +5.60 SD). Contains probable coiled-coil from 50 to 87 (38 residues%2C probability 1.00);gbkey=CDS;gene=YPCD1.93;product=putative transposase;protein_id=CAB54970.1;transl_table=11
AL117189.1	EMBL	sequence_feature	67186	67192	.	+	.	ID=id10068;Note=possible ribosome frameshift site;gbkey=misc_feature;gene=YPCD1.93
AL117189.1	EMBL	gene	67222	68031	.	+	.	ID=gene4173;Name=YPCD1.94;gbkey=Gene;gene=YPCD1.94;gene_biotype=protein_coding
AL117189.1	EMBL	CDS	67222	68031	.	+	0	ID=cds4101;Parent=gene4173;Dbxref=GOA:Q9RI05,InterPro:IPR001584,InterPro:IPR012337,InterPro:IPR025948,UniProtKB/TrEMBL:Q9RI05,NCBI_GP:CAB54971.1;Name=CAB54971.1;Note=YPCD1.94%2C probable transposase%2C len: 269 aa%3B similar to many e.g. TR:Q46612 (EMBL:X78052)%2C ORFB%2C Enterobacter agglomerans insertion sequence IS1222 (276 aa)%2C fasta scores%3B opt: 713 z-score: 1069.4 E(): 0%2C 44.6%25 identity in 258 aa overlap;gbkey=CDS;gene=YPCD1.94;product=putative transposase;protein_id=CAB54971.1;transl_table=11
AL117189.1	EMBL	repeat_region	67452	68063	.	+	.	ID=id10069;Note=repeat 3%2C similar to Enterobacter agglomerans insertion sequence IS1222 (EMBL:X78052);gbkey=repeat_region
AL117189.1	EMBL	repeat_region	68026	68064	.	-	.	ID=id10070;Note=repeat 9%3B imperfect inverted repeat;gbkey=repeat_region
AL117189.1	EMBL	gene	68179	68604	.	-	.	ID=gene4174;Name=YPCD1.95c;gbkey=Gene;gene=YPCD1.95c;gene_biotype=protein_coding;gene_synonym=sycH
AL117189.1	EMBL	CDS	68179	68604	.	-	0	ID=cds4102;Parent=gene4174;Dbxref=GOA:Q7BTX0,InterPro:IPR010261,PDB:1TTW,PDB:4GF3,UniProtKB/TrEMBL:Q7BTX0,NCBI_GP:CAB54972.1;Name=CAB54972.1;Note=YPCD1.95c%2C sycH%2C probable yopH targeting protein%2C len: 141 aa%3B identical to corresponding CDS Y0085 from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (141 aa)%2C fasta scores%3B opt: 912 z-score: 1868.1 E(): 0%2C 100.0%25 identity in 141 aa overlap and to TR:Q56934 (EMBL:U18727)%2C sycH%2C from Yersinia pseudotuberculosis plasmid pIB1. Highly similar to TR:Q56845 (EMBL:U08222)%2C sycH%2C from Yersinia enterocolitica (141 aa) (97.9%25 identity in 141 aa overlap);gbkey=CDS;gene=YPCD1.95c;product=putative yopH targeting protein;protein_id=CAB54972.1;transl_table=11
AL117189.1	EMBL	sequence_feature	68823	68824	.	+	.	ID=id10071;Note=difference: A is present in EMBL:AF053946 and in EMBL:AF074612;gbkey=misc_feature
AL117189.1	EMBL	gene	68947	69378	.	-	.	ID=gene4175;Name=YPCD1.96c;gbkey=Gene;gene=YPCD1.96c;gene_biotype=protein_coding
AL117189.1	EMBL	CDS	68947	69378	.	-	0	ID=cds4103;Parent=gene4175;Dbxref=GOA:Q7ARG8,InterPro:IPR002611,InterPro:IPR027417,UniProtKB/TrEMBL:Q7ARG8,NCBI_GP:CAB54973.1;Name=CAB54973.1;Note=YPCD1.96c%2C probable transposase%2C len: 143 aa%3B identical to corresponding CDS TR:O68708 from Y.pestis KIM5 pCD1 (EMBL:AF053946) (143 aa)%2C fasta scores%3B opt: 952 z-score: 1697.7 E(): 0%2C 100.0%25 identity in 143 aa overlap. Highly similar to the N-terminal half of ISTB_ECOLI (EMBL:X14793)%2C istB%2C E.coli insertion sequence IS21 putative ATP-binding protein (265 aa) (97.0%25 identity in 133 aa overlap) and TR:P74994 (EMBL:AF053947) Y.pestis KIM5 plasmid pMT1 IS100 putative transposase (259 aa) (44.2%25 identity in 129 aa overlap). Contains PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=CDS;gene=YPCD1.96c;product=putative transposase;protein_id=CAB54973.1;transl_table=11
AL117189.1	EMBL	sequence_feature	69046	69069	.	-	.	ID=id10072;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=YPCD1.96c
AL117189.1	EMBL	repeat_region	68981	70304	.	-	.	ID=id10073;Note=IS21 insertion element%2C similar to E.coli transposable element IS21 (EMBL:X14793) at DNA level;gbkey=repeat_region
AL117189.1	EMBL	gene	69378	70304	.	-	.	ID=gene4176;Name=YPCD1.97c;gbkey=Gene;gene=YPCD1.97c;gene_biotype=protein_coding
AL117189.1	EMBL	CDS	69378	70304	.	-	0	ID=cds4104;Parent=gene4176;Dbxref=GOA:Q9RI04,InterPro:IPR001584,InterPro:IPR012337,UniProtKB/TrEMBL:Q9RI04,NCBI_GP:CAB54974.1;Name=CAB54974.1;Note=YPCD1.97c%2C probable transposase remnant%2C len: 308 aa%3B identical to TR:O68707 from Y.pestis KIM5 pCD1 (EMBL:AF053946) (390 aa)%2C fasta scores%3B opt: 2101 z-score: 3521.8 E(): 0%2C 100.0%25 identity in 308 aa overlap%2C but missing the N-terminus where it has been interrupted by an IS100 element. The N-terminal remainder in present in YPCD1.03c. Highly similar to TRA0_ECOLI (EMBL:X14793)%2C istA%2C E.coli insertion element IS21 transposase (390 aa) (94.8%25 identity in 308 aa overlap). Also similar to TR:P74993 (EMBL:AF053947) Y.pestis KIM5 plasmid pMT1 IS100 putative transposase (340 aa) (32.8%25 identity in 241 aa overlap);gbkey=CDS;gene=YPCD1.97c;product=putative transposase;protein_id=CAB54974.1;transl_table=11
##sequence-region AL117211.1 1 96210
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=214092
AL117211.1	EMBL	region	1	96210	.	+	.	ID=id10074;Dbxref=taxon:214092;Is_circular=true;Name=pMT1;gbkey=Src;genome=plasmid;mol_type=genomic DNA;note=biovar:Orientalis;plasmid-name=pMT1;strain=CO-92
AL117211.1	EMBL	sequence_feature	1	57266	.	+	.	ID=id10075;Note=identical to Y.pestis KIM5 plasmid pMT1 (EMBL:AF053947) from 1 to 57331%2C except where noted;gbkey=misc_feature
AL117211.1	EMBL	sequence_feature	1	48266	.	+	.	ID=id10076;Note=identical to Y.pestis KIM5 plasmid pMT1 (EMBL:AF074611) from 48336 to 1%2C except where noted;gbkey=misc_feature
AL117211.1	EMBL	repeat_region	1	1959	.	+	.	ID=id10077;Note=IS100 element;gbkey=repeat_region
AL117211.1	EMBL	sequence_feature	60	60	.	+	.	ID=id10078;Note=difference: A is G in EMBL:AF074611;gbkey=misc_feature
AL117211.1	EMBL	gene	87	1109	.	+	.	ID=gene4177;Name=YPMT1.01;gbkey=Gene;gene=YPMT1.01;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	87	1109	.	+	0	ID=cds4105;Parent=gene4177;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAB55183.1;Name=CAB55183.1;Note=YPMT1.01%2C probable transposase%2C len: 340 aa%3B identical to insertion sequence IS100 transposases found in Y.pestis plasmids e.g. TR:P74993 (EMBL:AF053947) from KIM5 plasmid pMT1 (340 aa)%2C fasta scores%3B opt: 2328 z-score: 2755.3 E(): 0%2C 100.0%25 identity in 340 aa overlap and also in pathogenicity islands e.g. ORF12 (EMBL:AL031866) (100.0%25 identity in 340 aa overlap). Similar to many others e.g. TRA0_ECOLI (EMBL:X14793)%2C istA%2C E.coli transposase for insertion sequence element IS21 (390 aa) (33.1%25 identity in 329 aa overlap). Contains probable helix-turn-helix motif at aa 19-40 (Score 2045%2C +6.15 SD). Contains Pfam match to entry PF00239 recombinase%2C Site-specific recombinases%2C score 25.70%2C E-value 4.8e-06;gbkey=CDS;gene=YPMT1.01;product=putative transposase;protein_id=CAB55183.1;transl_table=11
AL117211.1	EMBL	sequence_feature	111	194	.	+	.	ID=id10079;Note=Pfam match to entry PF00239 recombinase%2C Site-specific recombinases%2C score 25.70%2C E-value 4.8e-06;gbkey=misc_feature;gene=YPMT1.01
AL117211.1	EMBL	sequence_feature	875	875	.	+	.	ID=id10080;Note=difference: A is G in EMBL:AF053947;gbkey=misc_feature;gene=YPMT1.01
AL117211.1	EMBL	gene	1106	1888	.	+	.	ID=gene4178;Name=YPMT1.02;gbkey=Gene;gene=YPMT1.02;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	1106	1888	.	+	0	ID=cds4106;Parent=gene4178;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAB55184.1;Name=CAB55184.1;Note=YPMT1.02%2C probable transposase%2C len: 260 aa%3B identical to insertion sequence IS100 transposases found in Y.pestis plasmids e.g. TR:P74994 (EMBL:AF053947) from KIM5 plasmid pMT1 (260 aa)%2C fasta scores%3B opt: 1658 z-score: 1841.0 E(): 0%2C 100.0%25 identity in 259 aa overlap and also in pathogenicity islands e.g. ORF11 (EMBL:AL031866) (259 aa) (100.0%25 identity in 259 aa overlap). Similar to many others e.g. ISTB_ECOLI (EMBL:X14793)%2C istB%2C E.coli transposase for insertion sequence element IS21 (265 aa) (47.4%25 identity in 249 aa overlap). Contains PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=CDS;gene=YPMT1.02;product=putative transposase;protein_id=CAB55184.1;transl_table=11
AL117211.1	EMBL	sequence_feature	1433	1456	.	+	.	ID=id10081;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=YPMT1.02
AL117211.1	EMBL	gene	2022	2630	.	-	.	ID=gene4179;Name=YPMT1.03c;gbkey=Gene;gene=YPMT1.03c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	2022	2630	.	-	0	ID=cds4107;Parent=gene4179;Dbxref=GOA:Q7ARG5,InterPro:IPR003458,UniProtKB/TrEMBL:Q7ARG5,NCBI_GP:CAB55185.1;Name=CAB55185.1;Note=YPMT1.03c%2C conserved hypothetical protein%2C len: 202 aa%3B unknown function%2C similar to Y194_LAMBD (EMBL:J02459)%2C bacteriophage lambda ORF194 (194 aa)%2C fasta scores%3B opt: 806 z-score: 936.8 E(): 0%2C 62.2%25 identity in 188 aa overlap. Identical to ORF Y1053 from Y.pestis KIM5 pMT1 (202 aa) (100.0%25 identity in 202 aa overlap);gbkey=CDS;gene=YPMT1.03c;product=hypothetical protein YPMT1.03c;protein_id=CAB55185.1;transl_table=11
AL117211.1	EMBL	ribosome_entry_site	2639	2643	.	-	.	ID=id10082;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL117211.1	EMBL	gene	2723	2935	.	-	.	ID=gene4180;Name=YPMT1.3Ac;gbkey=Gene;gene=YPMT1.3Ac;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	2723	2935	.	-	0	ID=cds4108;Parent=gene4180;Dbxref=GOA:Q7ARA7,UniProtKB/TrEMBL:Q7ARA7,NCBI_GP:CAB62364.1;Name=CAB62364.1;Note=YPMT1.3Ac%2C hypothetical protein%2C len: 70 aa%3B unknown function%2C identical to ORF Y1052 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (70 aa)%2C (100.0%25 identity in 70 aa overlap);gbkey=CDS;gene=YPMT1.3Ac;product=hypothetical protein YPMT1.3Ac;protein_id=CAB62364.1;transl_table=11
AL117211.1	EMBL	gene	2932	5820	.	-	.	ID=gene4181;Name=YPMT1.04c;gbkey=Gene;gene=YPMT1.04c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	2932	5820	.	-	0	ID=cds4109;Parent=gene4181;Dbxref=GOA:Q9RIE3,InterPro:IPR005003,InterPro:IPR005068,InterPro:IPR011083,UniProtKB/TrEMBL:Q9RIE3,NCBI_GP:CAB55186.1;Name=CAB55186.1;Note=YPMT1.04c%2C possible phage tail protein%2C len: 962 aa%3B C-terminus similar to region of Y314_LAMBD (EMBL:J02459)%2C bacteriophage lambda ORF314 (314 aa)%2C fasta scores%3B opt: 1080 z-score: 1011.1 E(): 0%2C 66.4%25 identity in 250 aa overlap. Identical to ORF Y1051 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (978 aa) (100.0%25 identity in 962 aa overlap) / TR:O68722 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (860 aa) (100.0%25 identity in 860 aa overlap) except for differing putative start codons;gbkey=CDS;gene=YPMT1.04c;product=putative phage tail protein;protein_id=CAB55186.1;transl_table=11
AL117211.1	EMBL	ribosome_entry_site	5826	5830	.	-	.	ID=id10083;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL117211.1	EMBL	gene	5901	6518	.	-	.	ID=gene4182;Name=YPMT1.05c;gbkey=Gene;gene=YPMT1.05c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	5901	6518	.	-	0	ID=cds4110;Parent=gene4182;Dbxref=GOA:Q9RIE2,InterPro:IPR025484,UniProtKB/TrEMBL:Q9RIE2,NCBI_GP:CAB55187.1;Name=CAB55187.1;Note=YPMT1.05c%2C hypothetical protein%2C len: 205 aa%3B unknown function%2C identical to TR:O68723 (EMBL:AF053947) hypothetical protein from Y.pestis KIM5 pMT1 (205 aa)%2C fasta scores%3B opt: 1385 z-score: 1656.3 E(): 0%2C 100.0%25 identity in 205 aa overlap and ORF Y1050 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (210 aa) (100.0%25 identity in 205 aa overlap) which has a differing putative start codon;gbkey=CDS;gene=YPMT1.05c;product=hypothetical protein YPMT1.05c;protein_id=CAB55187.1;transl_table=11
AL117211.1	EMBL	ribosome_entry_site	6528	6531	.	-	.	ID=id10084;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL117211.1	EMBL	gene	6536	11173	.	-	.	ID=gene4183;Name=YPMT1.06c;gbkey=Gene;gene=YPMT1.06c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	6536	11173	.	-	0	ID=cds4111;Parent=gene4183;Dbxref=GOA:Q7ARG4,InterPro:IPR003961,InterPro:IPR013783,InterPro:IPR015406,InterPro:IPR021034,UniProtKB/TrEMBL:Q7ARG4,NCBI_GP:CAB55188.1;Name=CAB55188.1;Note=YPMT1.06c%2C possible phage tail protein%2C len: 1545 aa%3B similar to TR:O64335 (EMBL:AF064539) bacteriophage N15 tail tip fiber protein GP21 (1061 aa)%2C fasta scores%3B opt: 1383 z-score: 1321.3 E(): 0%2C 30.2%25 identity in 993 aa overlap and N-terminus similar to VHSJ_LAMBD (EMBL:J02459) bacteriophage lambda host specificity protein J (1132 aa) (32.0%25 identity in 923 aa overlap). Highly similar to ORF Y1049 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (1545 aa) (99.9%25 identity in 1545 aa overlap) / TR:O68724 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (1492 aa) (100.0%25 identity in 1472 aa overlap) which has a different putative start and stop codon. Contains probable coiled-coils from 856 to 950 (95 residues) (Max score: 1.724%2C probability 1.00) and from 977 to 1028 (52 residues) (Max score: 1.600%2C probability 0.99). Contains two Pfam matches to entry PF00041 fn3%2C Fibronectin type III domain%2C scores 18.40%2C E-value 0.036 and 0.80%2C E-value 1.5;gbkey=CDS;gene=YPMT1.06c;product=putative phage tail protein;protein_id=CAB55188.1;transl_table=11
AL117211.1	EMBL	sequence_feature	8702	8941	.	-	.	ID=id10085;Note=Pfam match to entry PF00041 fn3%2C Fibronectin type III domain%2C score 18.40%2C E-value 0.036;gbkey=misc_feature;gene=YPMT1.06c
AL117211.1	EMBL	sequence_feature	8987	9244	.	-	.	ID=id10086;Note=Pfam match to entry PF00041 fn3%2C Fibronectin type III domain%2C score 0.80%2C E-value 1.5;gbkey=misc_feature;gene=YPMT1.06c
AL117211.1	EMBL	sequence_feature	6633	6633	.	+	.	ID=id10087;Note=difference: C is absent from EMBL:AF053947;gbkey=misc_feature
AL117211.1	EMBL	gene	11189	11776	.	-	.	ID=gene4184;Name=YPMT1.07c;gbkey=Gene;gene=YPMT1.07c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	11189	11776	.	-	0	ID=cds4112;Parent=gene4184;Dbxref=GOA:Q7ARG3,UniProtKB/TrEMBL:Q7ARG3,NCBI_GP:CAB55189.1;Name=CAB55189.1;Note=YPMT1.07c%2C possible phage tail protein%2C len: 195 aa%3B similar to TR:O64334 (EMBL:AF064539) bacteriophage N15 minor tail protein GP20 (192 aa)%2C fasta scores%3B opt: 251 z-score: 312.6 E(): 4.2e-10%2C 31.0%25 identity in 203 aa overlap and VTAI_LAMBD (EMBL:J02459) bacteriophage lambda tail assembly protein I (223 aa) (28.5%25 identity in 207 aa overlap). Identical to ORF Y1048 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (195 aa) (99.5%25 identity in 195 aa overlap) / TR:O68725 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (183 aa) (100.0%25 identity in 183 aa overlap) which has a different putative start codon;gbkey=CDS;gene=YPMT1.07c;product=putative phage tail protein;protein_id=CAB55189.1;transl_table=11
AL117211.1	EMBL	gene	11764	12561	.	-	.	ID=gene4185;Name=YPMT1.08c;gbkey=Gene;gene=YPMT1.08c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	11764	12561	.	-	0	ID=cds4113;Parent=gene4185;Dbxref=GOA:Q9RIE1,InterPro:IPR000064,InterPro:IPR000555,InterPro:IPR028090,UniProtKB/TrEMBL:Q9RIE1,NCBI_GP:CAB55190.1;Name=CAB55190.1;Note=YPMT1.08c%2C possible phage tail protein%2C len: 265 aa%3B similar to VTAK_LAMBD (EMBL:J02459) bacteriophage lambda tail assembly protein K (199 aa)%2C fasta scores%3B opt: 263 z-score: 334.4 E(): 2.6e-11%2C 32.8%25 identity in 198 aa overlap and to TR:O64333 (EMBL:AF064539) bacteriophage N15 minor tail protein GP19 (243 aa) (35.1%25 identity in 251 aa overlap). Identical to ORF Y1047 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (252 aa) (100.0%25 identity in 252 aa overlap) / TR:O68726 (EMBL:AF053947) from Y.pestis KIM5 pMT1 which have a different putative start codon;gbkey=CDS;gene=YPMT1.08c;product=putative phage tail protein;protein_id=CAB55190.1;transl_table=11
AL117211.1	EMBL	ribosome_entry_site	11784	11789	.	-	.	ID=id10088;Note=possible RBS;gbkey=regulatory;gene=YPMT1.08c;regulatory_class=ribosome_binding_site
AL117211.1	EMBL	sequence_feature	11902	11902	.	+	.	ID=id10089;Note=difference: G is T in EMBL:AF053947 and in EMBL:AF074611;gbkey=misc_feature
AL117211.1	EMBL	gene	12554	13285	.	-	.	ID=gene4186;Name=YPMT1.09c;gbkey=Gene;gene=YPMT1.09c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	12554	13285	.	-	0	ID=cds4114;Parent=gene4186;Dbxref=GOA:O68727,InterPro:IPR006487,UniProtKB/TrEMBL:O68727,NCBI_GP:CAB55191.1;Name=CAB55191.1;Note=YPMT1.09c%2C possible phage tail protein%2C len: 243 aa%3B similar to VMTL_LAMBD (EMBL:J02459) bacteriophage lambda minor tail protein L (232 aa)%2C fasta scores%3B opt: 542 z-score: 670.1 E(): 5.2e-30%2C 39.7%25 identity in 219 aa overlap and to TR:O64332 (EMBL:AF064539) bacteriophage N15 minor tail protein GP18 (251 aa) (36.3%25 identity in 251 aa overlap). Identical to ORF Y1046 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (243 aa) (100.0%25 identity in 243 aa overlap) / TR:O68727 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (232 aa) (100.0%25 identity in 232 aa overlap) which has a different putative start codon;gbkey=CDS;gene=YPMT1.09c;product=putative phage tail protein;protein_id=CAB55191.1;transl_table=11
AL117211.1	EMBL	ribosome_entry_site	12571	12574	.	-	.	ID=id10090;Note=possible RBS;gbkey=regulatory;gene=YPMT1.09c;regulatory_class=ribosome_binding_site
AL117211.1	EMBL	gene	13342	13677	.	-	.	ID=gene4187;Name=YPMT1.10c;gbkey=Gene;gene=YPMT1.10c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	13342	13677	.	-	0	ID=cds4115;Parent=gene4187;Dbxref=GOA:O68728,InterPro:IPR010265,UniProtKB/TrEMBL:O68728,NCBI_GP:CAB55192.1;Name=CAB55192.1;Note=YPMT1.10c%2C possible phage tail protein%2C len: 111 aa%3B similar to VMTM_LAMBD (EMBL:J02459) bacteriophage lambda minor tail protein M (109 aa)%2C fasta scores%3B opt: 152 z-score: 208.6 E(): 0.00026%2C 26.7%25 identity in 105 aa overlap and to TR:O64331 (EMBL:AF064539) bacteriophage N15 minor tail protein GP17 (115 aa) (30.0%25 identity in 110 aa overlap). Identical to ORF Y1045 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (111 aa) (100.0%25 identity in 111 aa overlap) / TR:O68728 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (111 aa) (100.0%25 identity in 111 aa overlap);gbkey=CDS;gene=YPMT1.10c;product=putative phage tail protein;protein_id=CAB55192.1;transl_table=11
AL117211.1	EMBL	gene	13719	18296	.	-	.	ID=gene4188;Name=YPMT1.11c;gbkey=Gene;gene=YPMT1.11c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	13719	18296	.	-	0	ID=cds4116;Parent=gene4188;Dbxref=GOA:O68729,InterPro:IPR006431,InterPro:IPR013491,UniProtKB/TrEMBL:O68729,NCBI_GP:CAB55193.1;Name=CAB55193.1;Note=YPMT1.11c%2C possible membrane protein%2C len: 1525 aa%3B unknown function%2C contains region similar to YF14_HAEIN (EMBL:U32827) Haemophilus influenzae hypothetical protein (631 aa)%2C fasta scores%3B opt: 304 z-score: 280.2 E(): 2.7e-08%2C 26.3%25 identity in 392 aa overlap. Weak similarity to the N-terminal binding domain of TR:O85472 (EMBL:AF067776)%2C emb%2C Abiotrophia defectiva extracellular matrix binding protein (fragment) (2055 aa) (20.6%25 identity in 1489 aa overlap). Identical to ORF Y1044 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (1525 aa) (100.0%25 identity in 1525 aa overlap) / TR:O68729 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (1525 aa) (100.0%25 identity in 1525 aa overlap). Contains probable coiled-coils from 97 to 130 (34 residues) (Max score: 1.466%2C probability 0.90)%2C from 646 to 680 (35 residues) (Max score: 1.566%2C probability 0.99)%2C from 794 to 861 (68 residues) (Max score: 1.597%2C probability 0.99) and from 1044 to 1072 (29 residues) (Max score: 1.480%2C probability 0.93). Contains hydrophobic%2C possible membrane-spanning region;gbkey=CDS;gene=YPMT1.11c;product=putative membrane protein;protein_id=CAB55193.1;transl_table=11
AL117211.1	EMBL	sequence_feature	17613	17613	.	+	.	ID=id10091;Note=difference: G is A in EMBL:AF053947 and in EMBL:AF074611;gbkey=misc_feature
AL117211.1	EMBL	gene	18304	18573	.	-	.	ID=gene4189;Name=YPMT1.12c;gbkey=Gene;gene=YPMT1.12c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	18304	18573	.	-	0	ID=cds4117;Parent=gene4189;Dbxref=GOA:Q7ARF9,UniProtKB/TrEMBL:Q7ARF9,NCBI_GP:CAB55194.1;Name=CAB55194.1;Note=YPMT1.12c%2C hypothetical protein%2C len: 89 aa%3B unknown function%2C identical to ORF Y1043 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (89 aa)%2C fasta scores%3B opt: 584 z-score: 734.2 E(): 0%2C 98.9%25 identity in 89 aa overlap;gbkey=CDS;gene=YPMT1.12c;product=hypothetical protein YPMT1.12c;protein_id=CAB55194.1;transl_table=11
AL117211.1	EMBL	gene	18654	18971	.	-	.	ID=gene4190;Name=YPMT1.13c;gbkey=Gene;gene=YPMT1.13c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	18654	18971	.	-	0	ID=cds4118;Parent=gene4190;Dbxref=GOA:O68730,UniProtKB/TrEMBL:O68730,NCBI_GP:CAB55195.1;Name=CAB55195.1;Note=YPMT1.13c%2C hypothetical protein%2C len: 105 aa%3B unknown function%2C identical to ORF Y1042 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (105 aa)%2C fasta scores%3B opt: 664 z-score: 837.5 E(): 0%2C 100.0%25 identity in 105 aa overlap and TR:O68730 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (105 aa) (100.0%25 identity in 105 aa overlap);gbkey=CDS;gene=YPMT1.13c;product=hypothetical protein YPMT1.13c;protein_id=CAB55195.1;transl_table=11
AL117211.1	EMBL	gene	19031	19777	.	-	.	ID=gene4191;Name=YPMT1.14c;gbkey=Gene;gene=YPMT1.14c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	19031	19777	.	-	0	ID=cds4119;Parent=gene4191;Dbxref=GOA:O68731,InterPro:IPR003343,InterPro:IPR008964,UniProtKB/TrEMBL:O68731,NCBI_GP:CAB55196.1;Name=CAB55196.1;Note=YPMT1.14c%2C hypothetical protein%2C len: 248 aa%3B unknown function%2C identical to ORF Y1041 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (248 aa)%2C fasta scores%3B opt: 1547 z-score: 1665.3 E(): 0%2C 100.0%25 identity in 248 aa overlap and TR:O68731 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (248 aa) (100.0%25 identity in 248 aa overlap). C-terminus similar to TR:O68736 (EMBL:AF053947) hypothetical protein from Y.pestis KIM5 pMT1 (143 aa) (43.0%25 identity in 86 aa overlap) and ORF Y1035 (EMBL:AF074611) hypothetical protein from Y.pestis KIM5 pMT1 (220 aa) (34.0%25 identity in 191 aa overlap);gbkey=CDS;gene=YPMT1.14c;product=hypothetical protein YPMT1.14c;protein_id=CAB55196.1;transl_table=11
AL117211.1	EMBL	gene	19852	20235	.	-	.	ID=gene4192;Name=YPMT1.15c;gbkey=Gene;gene=YPMT1.15c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	19852	20235	.	-	0	ID=cds4120;Parent=gene4192;Dbxref=GOA:Q7ARF6,UniProtKB/TrEMBL:Q7ARF6,NCBI_GP:CAB55197.1;Name=CAB55197.1;Note=YPMT1.15c%2C hypothetical protein%2C len: 127 aa%3B unknown function%2C identical to ORF Y1040 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (127 aa)%2C fasta scores%3B opt: 817 z-score: 1082.2 E(): 0%2C 99.2%25 identity in 127 aa overlap / TR:O68732 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (118 aa) (100.0%25 identity in 118 aa overlap) which has a different putative start codon;gbkey=CDS;gene=YPMT1.15c;product=hypothetical protein YPMT1.15c;protein_id=CAB55197.1;transl_table=11
AL117211.1	EMBL	gene	20237	20710	.	-	.	ID=gene4193;Name=YPMT1.16c;gbkey=Gene;gene=YPMT1.16c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	20237	20710	.	-	0	ID=cds4121;Parent=gene4193;Dbxref=GOA:Q7ARF5,UniProtKB/TrEMBL:Q7ARF5,NCBI_GP:CAB55198.1;Name=CAB55198.1;Note=YPMT1.16c%2C hypothetical protein%2C len: 157 aa%3B unknown function%2C identical to ORF Y1039 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (157 aa)%2C fasta scores%3B opt: 1012 z-score: 1207.0 E(): 0%2C 100.0%25 identity in 157 aa overlap / TR:O68733 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (126 aa) (100.0%25 identity in 126 aa overlap) which has a different putative start codon;gbkey=CDS;gene=YPMT1.16c;product=hypothetical protein YPMT1.16c;protein_id=CAB55198.1;transl_table=11
AL117211.1	EMBL	ribosome_entry_site	20241	20244	.	-	.	ID=id10092;Note=possible RBS;gbkey=regulatory;gene=YPMT1.16c;regulatory_class=ribosome_binding_site
AL117211.1	EMBL	gene	20701	21159	.	-	.	ID=gene4194;Name=YPMT1.17c;gbkey=Gene;gene=YPMT1.17c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	20701	21159	.	-	0	ID=cds4122;Parent=gene4194;Dbxref=GOA:Q7ARF4,UniProtKB/TrEMBL:Q7ARF4,NCBI_GP:CAB55199.1;Name=CAB55199.1;Note=YPMT1.17c%2C hypothetical protein%2C len: 152 aa%3B unknown function%2C identical to ORF Y1038 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (152 aa)%2C fasta scores%3B opt: 1011 z-score: 1336.1 E(): 0%2C 99.3%25 identity in 152 aa overlap / TR:O68734 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (114 aa) (100.0%25 identity in 114 aa overlap) which has a different putative start codon;gbkey=CDS;gene=YPMT1.17c;product=hypothetical protein YPMT1.17c;protein_id=CAB55199.1;transl_table=11
AL117211.1	EMBL	gene	21143	21976	.	-	.	ID=gene4195;Name=YPMT1.18c;gbkey=Gene;gene=YPMT1.18c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	21143	21976	.	-	0	ID=cds4123;Parent=gene4195;Dbxref=GOA:Q7ARF3,UniProtKB/TrEMBL:Q7ARF3,NCBI_GP:CAB55200.1;Name=CAB55200.1;Note=YPMT1.18c%2C hypothetical protein%2C len: 277 aa%3B unknown function%2C identical to ORF Y1037 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (277 aa)%2C fasta scores%3B opt: 1786 z-score: 2141.5 E(): 0%2C 100.0%25 identity in 277 aa overlap;gbkey=CDS;gene=YPMT1.18c;product=hypothetical protein YPMT1.18c;protein_id=CAB55200.1;transl_table=11
AL117211.1	EMBL	gene	21976	22410	.	-	.	ID=gene4196;Name=YPMT1.19c;gbkey=Gene;gene=YPMT1.19c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	21976	22410	.	-	0	ID=cds4124;Parent=gene4196;Dbxref=GOA:Q7ARF2,UniProtKB/TrEMBL:Q7ARF2,NCBI_GP:CAB55201.1;Name=CAB55201.1;Note=YPMT1.19c%2C hypothetical protein%2C len: 144 aa%3B unknown function%2C identical to ORF Y1036 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (144 aa)%2C fasta scores%3B opt: 924 z-score: 1079.7 E(): 0%2C 100.0%25 identity in 144 aa overlap / TR:O68735 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (99 aa) (100.0%25 identity in 99 aa overlap) which has a different putative start codon;gbkey=CDS;gene=YPMT1.19c;product=hypothetical protein YPMT1.19c;protein_id=CAB55201.1;transl_table=11
AL117211.1	EMBL	gene	22454	23116	.	-	.	ID=gene4197;Name=YPMT1.20c;gbkey=Gene;gene=YPMT1.20c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	22454	23116	.	-	0	ID=cds4125;Parent=gene4197;Dbxref=GOA:Q7ARF1,InterPro:IPR003343,InterPro:IPR008964,UniProtKB/TrEMBL:Q7ARF1,NCBI_GP:CAB55202.1;Name=CAB55202.1;Note=YPMT1.20c%2C hypothetical protein%2C len: 220 aa%3B unknown function%2C C-terminus shows similarity to a region within TR:Q45095 (EMBL:D17519) Bacillus circulans beta-1%2C3-glucanase precursor (877 aa)%2C fasta scores%3B opt: 262 z-score: 290.2 E(): 7.4e-09%2C 48.3%25 identity in 87 aa overlap. Also similar to a region of VMTV_LAMBD (EMBL:J02459) bacteriophage lambda major tail protein V (246 aa) (34.0%25 identity in 141 aa overlap). Identical to ORF Y1035 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (220 aa) (100.0%25 identity in 220 aa overlap) / TR:O68736 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (143 aa) which has a different putative start codon. Similar at the C-terminus to ORF Y1041 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (34.0%25 identity in 191 aa overlap) / TR:O68731 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (34.0%25 identity in 191 aa overlap);gbkey=CDS;gene=YPMT1.20c;product=hypothetical protein YPMT1.20c;protein_id=CAB55202.1;transl_table=11
AL117211.1	EMBL	ribosome_entry_site	23123	23127	.	-	.	ID=id10093;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL117211.1	EMBL	gene	23191	24066	.	-	.	ID=gene4198;Name=YPMT1.21c;gbkey=Gene;gene=YPMT1.21c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	23191	24066	.	-	0	ID=cds4126;Parent=gene4198;Dbxref=GOA:O68737,UniProtKB/TrEMBL:O68737,NCBI_GP:CAB55203.1;Name=CAB55203.1;Note=YPMT1.21c%2C hypothetical protein%2C len: 291 aa%3B unknown function%2C weak similarity to SRPI_SYNP7 (EMBL:U23436)%2C srpI%2C Synechococcus sp. hypothetical protein from plasmid pANL (306 aa)%2C fasta scores%3B opt: 200 z-score: 241.0 E(): 4.1e-06%2C 25.0%25 identity in 300 aa overlap. Identical to ORF Y1034 (EMBL:AF074611) from Y.pestis KIM5 (291 aa) (100.0%25 identity in 291 aa overlap) / TR:O68737 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (291 aa) (100.0%25 identity in 291 aa overlap);gbkey=CDS;gene=YPMT1.21c;product=hypothetical protein YPMT1.21c;protein_id=CAB55203.1;transl_table=11
AL117211.1	EMBL	gene	24093	24926	.	-	.	ID=gene4199;Name=YPMT1.22c;gbkey=Gene;gene=YPMT1.22c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	24093	24926	.	-	0	ID=cds4127;Parent=gene4199;Dbxref=GOA:Q9RIE0,UniProtKB/TrEMBL:Q9RIE0,NCBI_GP:CAB55204.1;Name=CAB55204.1;Note=YPMT1.22c%2C hypothetical protein%2C len: 277 aa%3B unknown function%2C a frameshift fusion of ORFs Y1032 and Y1033 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (151 aa%2C 123 aa) / TR:O68739 and TR:O68738 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (146 aa%2C 105 aa) which have different putative start codons. Contains probable coiled-coil from 107 to 147 (41 residues) (Max score: 1.626%2C probability 1.00);gbkey=CDS;gene=YPMT1.22c;product=hypothetical protein YPMT1.22c;protein_id=CAB55204.1;transl_table=11
AL117211.1	EMBL	sequence_feature	24481	24482	.	+	.	ID=id10094;Note=difference: TCAGTTCGGCGTTCTCGCTCTCCAGAGCGGA GTAGCGTTCGTCGCGCTGTGCCAGTTCA is present in EMBL:AF053947 and TCAGTTCGGCGTTCTTG is present in EMBL:AF074611;gbkey=misc_feature
AL117211.1	EMBL	gene	24949	26538	.	-	.	ID=gene4200;Name=YPMT1.23c;gbkey=Gene;gene=YPMT1.23c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	24949	26538	.	-	0	ID=cds4128;Parent=gene4200;Dbxref=GOA:O68740,UniProtKB/TrEMBL:O68740,NCBI_GP:CAB55205.1;Name=CAB55205.1;Note=YPMT1.23c%2C hypothetical protein%2C len: 529 aa%3B unknown function%2C identical to ORF Y1031 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (259 aa)%2C fasta scores%3B opt: 3506 z-score: 4012.6 E(): 0%2C 100.0%25 identity in 529 aa overlap / TR:O68740 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (412 aa) (100.0%25 identity in 412 aa overlap) which has a different putative start codon;gbkey=CDS;gene=YPMT1.23c;product=hypothetical protein YPMT1.23c;protein_id=CAB55205.1;transl_table=11
AL117211.1	EMBL	gene	26557	27813	.	-	.	ID=gene4201;Name=YPMT1.24c;gbkey=Gene;gene=YPMT1.24c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	26557	27813	.	-	0	ID=cds4129;Parent=gene4201;Dbxref=GOA:Q7ARE8,InterPro:IPR004921,InterPro:IPR027417,UniProtKB/TrEMBL:Q7ARE8,NCBI_GP:CAB55206.1;Name=CAB55206.1;Note=YPMT1.24c%2C hypothetical protein%2C len: 418 aa%3B unknown function%2C identical to ORF Y1030 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (418 aa)%2C fasta scores%3B opt: 2863 z-score: 3413.3 E(): 0%2C 100.0%25 identity in 418 aa overlap / TR:O68741 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (402 aa) (100.0%25 identity in 402 aa overlap) which has a different putative start codon. Contains PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=CDS;gene=YPMT1.24c;product=hypothetical protein YPMT1.24c;protein_id=CAB55206.1;transl_table=11
AL117211.1	EMBL	sequence_feature	27700	27723	.	-	.	ID=id10095;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=YPMT1.24c
AL117211.1	EMBL	gene	27816	28457	.	-	.	ID=gene4202;Name=YPMT1.25c;gbkey=Gene;gene=YPMT1.25c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	27816	28457	.	-	0	ID=cds4130;Parent=gene4202;Dbxref=GOA:O68742,UniProtKB/TrEMBL:O68742,NCBI_GP:CAB55207.1;Name=CAB55207.1;Note=YPMT1.25c%2C hypothetical protein%2C len: 213 aa%3B unknown function%2C identical to ORF Y1029 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (213 aa)%2C fasta scores%3B opt: 1361 z-score: 1495.2 E(): 0%2C 100.0%25 identity in 213 aa overlap / TR:O68742 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (213 aa) (100.0%25 identity in 213 aa overlap). Contains probable helix-turn-helix motif at aa 30-51 (Score 1936%2C +5.78 SD);gbkey=CDS;gene=YPMT1.25c;product=hypothetical protein YPMT1.25c;protein_id=CAB55207.1;transl_table=11
AL117211.1	EMBL	gene	28653	28919	.	-	.	ID=gene4203;Name=YPMT1.25Ac;gbkey=Gene;gene=YPMT1.25Ac;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	28653	28919	.	-	0	ID=cds4131;Parent=gene4203;Dbxref=GOA:O68743,UniProtKB/TrEMBL:O68743,NCBI_GP:CAB62365.1;Name=CAB62365.1;Note=YPMT1.25Ac%2C hypothetical protein%2C len: 88 aa%3B unknown function%2C identical to ORF Y1028 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (88 aa)%2C fasta scores%3B opt: 563 z-score: 793.0 E(): 0%2C 100.0%25 identity in 88 aa overlap;gbkey=CDS;gene=YPMT1.25Ac;product=hypothetical protein YPMT1.25Ac;protein_id=CAB62365.1;transl_table=11
AL117211.1	EMBL	gene	28929	29828	.	-	.	ID=gene4204;Name=YPMT1.26c;gbkey=Gene;gene=YPMT1.26c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	28929	29828	.	-	0	ID=cds4132;Parent=gene4204;Dbxref=GOA:Q7ARE6,InterPro:IPR016181,UniProtKB/TrEMBL:Q7ARE6,NCBI_GP:CAB55208.1;Name=CAB55208.1;Note=YPMT1.26c%2C hypothetical protein%2C len: 299 aa%3B unknown function%2C identical to ORF Y1027 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (299 aa)%2C fasta scores%3B opt: 1986 z-score: 2370.4 E(): 0%2C 99.7%25 identity in 299 aa overlap / TR:O68744 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (296 aa) (100.0%25 identity in 296 aa overlap) which has a different putative start codon;gbkey=CDS;gene=YPMT1.26c;product=hypothetical protein YPMT1.26c;protein_id=CAB55208.1;transl_table=11
AL117211.1	EMBL	gene	29825	30079	.	-	.	ID=gene4205;Name=YPMT1.26Ac;gbkey=Gene;gene=YPMT1.26Ac;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	29825	30079	.	-	0	ID=cds4133;Parent=gene4205;Dbxref=GOA:Q7ARA5,UniProtKB/TrEMBL:Q7ARA5,NCBI_GP:CAB62366.1;Name=CAB62366.1;Note=YPMT1.26Ac%2C hypothetical protein%2C len: 84 aa%3B unknown function%2C identical to ORF Y1027 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (84 aa)%2C fasta scores%3B opt: 551 z-score: 732.5 E(): 0%2C 100.0%25 identity in 84 aa overlap;gbkey=CDS;gene=YPMT1.26Ac;product=hypothetical protein YPMT1.26Ac;protein_id=CAB62366.1;transl_table=11
AL117211.1	EMBL	gene	30072	30770	.	-	.	ID=gene4206;Name=YPMT1.27c;gbkey=Gene;gene=YPMT1.27c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	30072	30770	.	-	0	ID=cds4134;Parent=gene4206;Dbxref=GOA:Q7ARE5,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR025662,InterPro:IPR027417,UniProtKB/TrEMBL:Q7ARE5,NCBI_GP:CAB55209.1;Name=CAB55209.1;Note=YPMT1.27c%2C possible ABC transporter ATP-binding protein%2C len: 232 aa%3B weakly similar to many putative ABC transporter proteins e.g. ABC_ECOLI (EMBL:AE000129) Escherichia coli putative ATP-binding protein (343 aa)%2C fasta scores%3B opt: 155 z-score: 178.2 E(): 0.013%2C 28.3%25 identity in 184 aa overlap. Identical to ORF Y1025 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (232 aa) (99.6%25 identity in 232 aa overlap) / TR:O68745 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (212 aa) (100.0%25 identity in 212 aa overlap) which has a different putative start codon. Contains Contains Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 7.60%2C E-value 6.1e-06 and PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=CDS;gene=YPMT1.27c;product=putative ABC transporter ATP-binding protein;protein_id=CAB55209.1;transl_table=11
AL117211.1	EMBL	sequence_feature	30123	30566	.	-	.	ID=id10096;Note=Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 7.60%2C E-value 6.1e-06;gbkey=misc_feature;gene=YPMT1.27c
AL117211.1	EMBL	sequence_feature	30522	30545	.	-	.	ID=id10097;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=YPMT1.27c
AL117211.1	EMBL	gene	30707	31375	.	-	.	ID=gene4207;Name=YPMT1.28c;gbkey=Gene;gene=YPMT1.28c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	30707	31375	.	-	0	ID=cds4135;Parent=gene4207;Dbxref=GOA:Q9RID9,InterPro:IPR003115,UniProtKB/TrEMBL:Q9RID9,NCBI_GP:CAB55210.1;Name=CAB55210.1;Note=YPMT1.28c%2C hypothetical protein%2C len: 222 aa%3B unknown function%2C N-terminus similar to YNAK_ECOLI (EMBL:AE000233) E.coli hypothetical protein (87 aa)%2C fasta scores%3B opt: 224 z-score: 269.1 E(): 1.1e-07%2C 40.5%25 identity in 84 aa overlap and TR:O06671 (EMBL:AF000658) Streptococcus pneumoniae hypothetical protein (252 aa) (27.6%25 identity in 152 aa overlap). Identical to ORF Y1024 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (233 aa) (99.6%25 identity in 233 aa overlap) / TR:O68746 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (222 aa) (100.0%25 identity in 222 aa overlap) which have different putative start codons;gbkey=CDS;gene=YPMT1.28c;product=hypothetical protein YPMT1.28c;protein_id=CAB55210.1;transl_table=11
AL117211.1	EMBL	ribosome_entry_site	30784	30788	.	-	.	ID=id10098;Note=possible RBS;gbkey=regulatory;gene=YPMT1.28c;regulatory_class=ribosome_binding_site
AL117211.1	EMBL	gene	31375	32073	.	-	.	ID=gene4208;Name=YPMT1.29c;gbkey=Gene;gene=YPMT1.29c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	31375	32073	.	-	0	ID=cds4136;Parent=gene4208;Dbxref=GOA:Q7ARE4,InterPro:IPR003115,UniProtKB/TrEMBL:Q7ARE4,NCBI_GP:CAB55211.1;Name=CAB55211.1;Note=YPMT1.29c%2C hypothetical protein%2C len: 232 aa%3B unknown function%2C identical to ORF Y1023 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (232 aa)%2C fasta scores%3B opt: 1495 z-score: 1681.6 E(): 0%2C 100.0%25 identity in 232 aa overlap / TR:O68747 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (226 aa) (100.0%25 identity in 226 aa overlap) which has a different putative start codon;gbkey=CDS;gene=YPMT1.29c;product=hypothetical protein YPMT1.29c;protein_id=CAB55211.1;transl_table=11
AL117211.1	EMBL	ribosome_entry_site	31384	31388	.	-	.	ID=id10099;Note=possible RBS;gbkey=regulatory;gene=YPMT1.29c;regulatory_class=ribosome_binding_site
AL117211.1	EMBL	gene	32138	33697	.	+	.	ID=gene4209;Name=YPMT1.30;gbkey=Gene;gene=YPMT1.30;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	32138	33697	.	+	0	ID=cds4137;Parent=gene4209;Dbxref=GOA:Q7ARE3,InterPro:IPR001650,InterPro:IPR011545,InterPro:IPR014001,InterPro:IPR027417,UniProtKB/TrEMBL:Q7ARE3,NCBI_GP:CAB55212.1;Name=CAB55212.1;Note=YPMT1.30%2C hypothetical protein%2C len: 519 aa%3B possibly involved in DNA repair%2C weak similarity to excinucleases and helicases e.g. UVSW_BPT4 (EMBL:X56097) bacteriophage T4 regulatory protein (587 aa)%2C fasta scores%3B opt: 181 z-score: 212.2 E(): 0.00017%2C 22.0%25 identity in 478 aa overlap. Similar to TR:O57949 (EMBL:AP000001) Pyrococcus horikoshii hypothetical protein (444 aa)%2C fasta scores%3B opt: 297 z-score: 349.9 E(): 3.5e-12%2C 27.8%25 identity in 500 aa overlap. Identical to ORF Y1022 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (519 aa) (100.0%25 identity in 519 aa overlap) / TR:O68748 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (492 aa) (100.0%25 identity in 492 aa overlap) which has a different putative start codon. Contains Pfam match to entry PF00271 helicase_C%2C Helicases conserved C-terminal domain%2C score 35.80%2C E-value 9.8e-07;gbkey=CDS;gene=YPMT1.30;product=hypothetical protein YPMT1.30;protein_id=CAB55212.1;transl_table=11
AL117211.1	EMBL	sequence_feature	32569	32569	.	+	.	ID=id10100;Note=difference: T is G in EMBL:AF053947 and in EMBL:AF074611;gbkey=misc_feature;gene=YPMT1.30
AL117211.1	EMBL	sequence_feature	33281	33526	.	+	.	ID=id10101;Note=Pfam match to entry PF00271 helicase_C%2C Helicases conserved C-terminal domain%2C score 35.80%2C E-value 9.8e-07;gbkey=misc_feature;gene=YPMT1.30
AL117211.1	EMBL	gene	33700	33978	.	+	.	ID=gene4210;Name=YPMT1.31;gbkey=Gene;gene=YPMT1.31;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	33700	33978	.	+	0	ID=cds4138;Parent=gene4210;Dbxref=GOA:O68749,UniProtKB/TrEMBL:O68749,NCBI_GP:CAB55213.1;Name=CAB55213.1;Note=YPMT1.31%2C hypothetical protein%2C len: 92 aa%3B unknown function%2C identical to ORF Y1021 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (92 aa)%2C fasta scores%3B opt: 563 z-score: 717.8 E(): 1.1e-32%2C 100.0%25 identity in 92 aa overlap / TR:O68749 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (92 aa) (100.0%25 identity in 92 aa overlap);gbkey=CDS;gene=YPMT1.31;product=hypothetical protein YPMT1.31;protein_id=CAB55213.1;transl_table=11
AL117211.1	EMBL	ribosome_entry_site	34021	34024	.	+	.	ID=id10102;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL117211.1	EMBL	gene	34038	34460	.	+	.	ID=gene4211;Name=YPMT1.32;gbkey=Gene;gene=YPMT1.32;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	34038	34460	.	+	0	ID=cds4139;Parent=gene4211;Dbxref=GOA:Q7ARE1,UniProtKB/TrEMBL:Q7ARE1,NCBI_GP:CAB55214.1;Name=CAB55214.1;Note=YPMT1.32%2C possible lipoprotein%2C len: 140 aa%3B unknown function%2C identical to ORF Y1020 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (140 aa)%2C fasta scores%3B opt: 899 z-score: 1113.6 E(): 0%2C 100.0%25 identity in 140 aa overlap / TR:O68750 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (85 aa) (100.0%25 identity in 85 aa overlap) which has a different putative start codon. Contains possible N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site%2C so may be a lipoprotein;gbkey=CDS;gene=YPMT1.32;product=putative lipoprotein;protein_id=CAB55214.1;transl_table=11
AL117211.1	EMBL	sequence_feature	34062	34094	.	+	.	ID=id10103;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=YPMT1.32
AL117211.1	EMBL	gene	34465	34992	.	+	.	ID=gene4212;Name=YPMT1.33;gbkey=Gene;gene=YPMT1.33;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	34465	34992	.	+	0	ID=cds4140;Parent=gene4212;Dbxref=GOA:Q9RID8,InterPro:IPR003223,UniProtKB/TrEMBL:Q9RID8,NCBI_GP:CAB55215.1;Name=CAB55215.1;Note=YPMT1.33%2C possible transcriptional regulator%2C len: 175 aa%3B similar to repressors for phase-1 flagellin gene e.g. FLJA_SALAE (EMBL:D13690)%2C fljA%2C Salmonella abortus-equi repressor for phase-1 flagellin gene (179 aa)%2C fasta scores%3B opt: 326 z-score: 417.2 E(): 6.3e-16%2C 32.9%25 identity in 170 aa overlap. Identical to ORF Y1019 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (187 aa) (100.0%25 identity in 175 aa overlap) which has a different putative start codon / TR:O68751 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (175 aa) (100.0%25 identity in 175 aa overlap);gbkey=CDS;gene=YPMT1.33;product=putative transcriptional regulator;protein_id=CAB55215.1;transl_table=11
AL117211.1	EMBL	sequence_feature	35188	35189	.	+	.	ID=id10104;Note=difference: TC is present in EMBL:AF053947 and in EMBL:AF074611;gbkey=misc_feature
AL117211.1	EMBL	gene	35314	35964	.	+	.	ID=gene4213;Name=YPMT1.34;gbkey=Gene;gene=YPMT1.34;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	35314	35964	.	+	0	ID=cds4141;Parent=gene4213;Dbxref=GOA:O68752,UniProtKB/TrEMBL:O68752,NCBI_GP:CAB55216.1;Name=CAB55216.1;Note=YPMT1.34%2C hypothetical protein%2C len: 216 aa%3B unknown function%2C identical to ORF Y1018 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (216 aa)%2C fasta scores%3B opt: 1348 z-score: 1590.1 E(): 0%2C 100.0%25 identity in 216 aa overlap / TR:O68752 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (216 aa) (100.0%25 identity in 216 aa overlap);gbkey=CDS;gene=YPMT1.34;product=hypothetical protein YPMT1.34;protein_id=CAB55216.1;transl_table=11
AL117211.1	EMBL	ribosome_entry_site	36037	36041	.	+	.	ID=id10105;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL117211.1	EMBL	gene	36049	36276	.	+	.	ID=gene4214;Name=YPMT1.34A;gbkey=Gene;gene=YPMT1.34A;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	36049	36276	.	+	0	ID=cds4142;Parent=gene4214;Dbxref=GOA:Q7ARA4,UniProtKB/TrEMBL:Q7ARA4,NCBI_GP:CAB62367.1;Name=CAB62367.1;Note=YPMT1.34A%2C hypothetical protein%2C len: 75 aa%3B unknown function%2C identical to ORF Y1017 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (75 aa)%2C fasta scores%3B opt: 469 z-score: 680.6 E(): 1.6e-30%2C 100.0%25 identity in 75 aa overlap;gbkey=CDS;gene=YPMT1.34A;product=hypothetical protein YPMT1.34A;protein_id=CAB62367.1;transl_table=11
AL117211.1	EMBL	sequence_feature	36726	36726	.	+	.	ID=id10106;Note=difference: C is absent from EMBL:AF053947;gbkey=misc_feature
AL117211.1	EMBL	gene	36915	37397	.	-	.	ID=gene4215;Name=YPMT1.35c;gbkey=Gene;gene=YPMT1.35c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	36915	37397	.	-	0	ID=cds4143;Parent=gene4215;Dbxref=GOA:O68753,UniProtKB/TrEMBL:O68753,NCBI_GP:CAB55217.1;Name=CAB55217.1;Note=YPMT1.35c%2C hypothetical protein%2C len: 160 aa%3B unknown function%2C identical to ORF Y1015 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (160 aa)%2C fasta scores%3B opt: 1066 z-score: 1370.8 E(): 0%2C 100.0%25 identity in 160 aa overlap / TR:O68753 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (160 aa) (100.0%25 identity in 160 aa overlap);gbkey=CDS;gene=YPMT1.35c;product=hypothetical protein YPMT1.35c;protein_id=CAB55217.1;transl_table=11
AL117211.1	EMBL	sequence_feature	37593	37593	.	+	.	ID=id10107;Note=difference: C is absent from EMBL:AF053947;gbkey=misc_feature
AL117211.1	EMBL	gene	37603	37890	.	-	.	ID=gene4216;Name=YPMT1.36c;gbkey=Gene;gene=YPMT1.36c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	37603	37890	.	-	0	ID=cds4144;Parent=gene4216;Dbxref=GOA:Q9RID7,UniProtKB/TrEMBL:Q9RID7,NCBI_GP:CAB55218.1;Name=CAB55218.1;Note=YPMT1.36c%2C hypothetical protein%2C len: 95 aa%3B unknown function%2C identical to ORF Y1012 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (116 aa)%2C fasta scores%3B opt: 674 z-score: 918.2 E(): 0%2C 100.0%25 identity in 95 aa overlap / TR:O68754 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (93 aa) (100.0%25 identity in 93 aa overlap) which have different putative start codons;gbkey=CDS;gene=YPMT1.36c;product=hypothetical protein YPMT1.36c;protein_id=CAB55218.1;transl_table=11
AL117211.1	EMBL	ribosome_entry_site	37893	37897	.	-	.	ID=id10108;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL117211.1	EMBL	repeat_region	37978	38685	.	-	.	ID=id10109;Note=IS200 element;gbkey=repeat_region
AL117211.1	EMBL	gene	38084	38542	.	-	.	ID=gene4217;Name=YPMT1.37c;gbkey=Gene;gene=YPMT1.37c;gene_biotype=protein_coding;gene_synonym=tnpA
AL117211.1	EMBL	CDS	38084	38542	.	-	0	ID=cds4145;Parent=gene4217;Dbxref=GOA:Q56938,InterPro:IPR002686,UniProtKB/TrEMBL:Q56938,NCBI_GP:CAB55219.1;Name=CAB55219.1;Note=YPMT1.37c%2C tnpA%2C probable transposase%2C len: 152 aa%3B similar to many IS200 type transposases e.g. TR:O54306 (EMBL:Y09909)%2C tnpA%2C Salmonella typhi putative transposase (152 aa)%2C fasta scores%3B opt: 1003 z-score: 1293.4 E(): 0%2C 94.1%25 identity in 152 aa overlap. Identical to ORF Y1011 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (169 aa) (100.0%25 identity in 152 aa overlap);gbkey=CDS;gene=YPMT1.37c;product=putative transposase;protein_id=CAB55219.1;transl_table=11
AL117211.1	EMBL	sequence_feature	38465	38465	.	+	.	ID=id10110;Note=difference: C is absent from EMBL:AF053947;gbkey=misc_feature
AL117211.1	EMBL	gene	38751	39320	.	-	.	ID=gene4218;Name=YPMT1.38c;gbkey=Gene;gene=YPMT1.38c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	38751	39320	.	-	0	ID=cds4146;Parent=gene4218;Dbxref=GOA:Q7ARD7,InterPro:IPR012337,UniProtKB/TrEMBL:Q7ARD7,NCBI_GP:CAB55220.1;Name=CAB55220.1;Note=YPMT1.38c%2C hypothetical protein%2C len: 189 aa%3B unknown function%2C identical to ORF Y1010 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (189 aa)%2C fasta scores%3B opt: 1233 z-score: 1525.4 E(): 0%2C 100.0%25 identity in 189 aa overlap and highly similar to TR:O68755 (EMBL:AF053947) hypothetical protein from Y.pestis KIM5 pMT1 (195 aa) (97.3%25 identity in 187 aa overlap);gbkey=CDS;gene=YPMT1.38c;product=hypothetical protein YPMT1.38c;protein_id=CAB55220.1;transl_table=11
AL117211.1	EMBL	sequence_feature	38780	38780	.	+	.	ID=id10111;Note=difference: C is absent from EMBL:AF053947;gbkey=misc_feature
AL117211.1	EMBL	ribosome_entry_site	39329	39333	.	-	.	ID=id10112;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL117211.1	EMBL	gene	39333	40079	.	-	.	ID=gene4219;Name=YPMT1.39c;gbkey=Gene;gene=YPMT1.39c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	39333	40079	.	-	0	ID=cds4147;Parent=gene4219;Dbxref=GOA:Q9RID6,UniProtKB/TrEMBL:Q9RID6,NCBI_GP:CAB55221.1;Name=CAB55221.1;Note=YPMT1.39c%2C hypothetical protein%2C len: 248 aa%3B unknown function%2C highly similar to ORF Y1009 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (248 aa)%2C fasta scores%3B opt: 1636 z-score: 1943.4 E(): 0%2C 99.6%25 identity in 248 aa overlap;gbkey=CDS;gene=YPMT1.39c;product=hypothetical protein YPMT1.39c;protein_id=CAB55221.1;transl_table=11
AL117211.1	EMBL	sequence_feature	39563	39563	.	+	.	ID=id10113;Note=difference: C is T in EMBL:AF053947 and in EMBL:AF074611;gbkey=misc_feature
AL117211.1	EMBL	sequence_feature	39700	39700	.	+	.	ID=id10114;Note=difference: G is absent from EMBL:AF053947;gbkey=misc_feature
AL117211.1	EMBL	gene	40069	41985	.	-	.	ID=gene4220;Name=YPMT1.40c;gbkey=Gene;gene=YPMT1.40c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	40069	41985	.	-	0	ID=cds4148;Parent=gene4220;Dbxref=GOA:Q9RID5,InterPro:IPR027417,UniProtKB/TrEMBL:Q9RID5,NCBI_GP:CAB55222.1;Name=CAB55222.1;Note=YPMT1.40c%2C possible exonuclease subunit 2%2C len: 638 aa%3B weakly similar to e.g. EXO2_BPT4 (EMBL:X01804) bacteriophage T4 exonuclease subunit 2 (560 aa)%2C fasta scores%3B opt: 204 z-score: 221.9 E(): 4.7e-05%2C 21.3%25 identity in 634 aa overlap. Identical to ORF Y1008 from Y.pestis KIM5 pMT1 (642 aa) (100.0%25 identity in 638 aa overlap) / TR:O68756 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (627 aa) (100.0%25 identity in 627 aa overlap) which have different putative start codons. Contains probable coiled-coils from 171 to 226 (56 residues) (Max score: 1.428%2C probability 0.81)%2C from 349 to 377 (29 residues) (Max score: 1.451%2C probability 0.87) and from 440 to 481 (42 residues) (Max score: 1.493%2C probability 0.94). Contains PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=CDS;gene=YPMT1.40c;product=putative exonuclease subunit 2;protein_id=CAB55222.1;transl_table=11
AL117211.1	EMBL	sequence_feature	41845	41868	.	-	.	ID=id10115;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=YPMT1.40c
AL117211.1	EMBL	ribosome_entry_site	41992	41995	.	-	.	ID=id10116;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL117211.1	EMBL	gene	41994	42218	.	-	.	ID=gene4221;Name=YPMT1.40Ac;gbkey=Gene;gene=YPMT1.40Ac;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	41994	42218	.	-	0	ID=cds4149;Parent=gene4221;Dbxref=GOA:Q9RID4,UniProtKB/TrEMBL:Q9RID4,NCBI_GP:CAB62368.1;Name=CAB62368.1;Note=YPMT1.40Ac%2C hypothetical protein%2C len: 74 aa%3B unknown function%2C identical to part of ORF Y1007 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (88 aa)%2C fasta scores%3B opt: 503 z-score: 705.0 E(): 6.9e-32%2C 100.0%25 identity in 74 aa overlap;gbkey=CDS;gene=YPMT1.40Ac;product=hypothetical protein YPMT1.40Ac;protein_id=CAB62368.1;transl_table=11
AL117211.1	EMBL	gene	42215	43300	.	-	.	ID=gene4222;Name=YPMT1.41c;gbkey=Gene;gene=YPMT1.41c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	42215	43300	.	-	0	ID=cds4150;Parent=gene4222;Dbxref=GOA:Q9R2P6,InterPro:IPR004843,InterPro:IPR029052,UniProtKB/TrEMBL:Q9R2P6,NCBI_GP:CAB55223.1;Name=CAB55223.1;Note=YPMT1.41c%2C possible exonuclease subunit 1%2C len: 361 aa%3B similar to EXO1_BPT4 (EMBL:X01804) bacteriophage T4 exonuclease subunit 1 (339 aa)%2C fasta scores%3B opt: 201 z-score: 234.7 E(): 9.3e-06%2C 23.3%25 identity in 339 aa overlap. Identical to ORF Y1006 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (361 aa) (100.0%25 identity in 361 aa overlap) / TR:O68757 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (317 aa) (100.0%25 identity in 317 aa overlap) which has a different putative start codon;gbkey=CDS;gene=YPMT1.41c;product=putative exonuclease subunit 1;protein_id=CAB55223.1;transl_table=11
AL117211.1	EMBL	ribosome_entry_site	42223	42227	.	-	.	ID=id10117;Note=possible RBS;gbkey=regulatory;gene=YPMT1.41c;regulatory_class=ribosome_binding_site
AL117211.1	EMBL	gene	43716	44738	.	+	.	ID=gene4223;Name=YPMT1.42;gbkey=Gene;gene=YPMT1.42;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	43716	44738	.	+	0	ID=cds4151;Parent=gene4223;Dbxref=GOA:Q7ARD6,InterPro:IPR001638,InterPro:IPR015168,UniProtKB/TrEMBL:Q7ARD6,NCBI_GP:CAB55224.1;Name=CAB55224.1;Note=YPMT1.42%2C possible periplasmic protein%2C len: 340 aa%3B similar to e.g. SSUA_BACSU (EMBL:L16808)%2C ssuA%2C Bacillus subtilis putative aliphatic sulfonates binding protein precursor (332 aa)%2C fasta scores%3B opt: 237 z-score: 281.4 E(): 2.3e-08%2C 24.3%25 identity in 350 aa overlap and TR:Q48929 (EMBL:U40213) Methanobacterium bryantii copper response extracellular protein (353 aa) (21.7%25 identity in 341 aa overlap). Unlike ssuA%2C it has no prokaryotic membrane lipoprotein lipid attachment site%2C but does have a potential N-terminal signal sequence. Identical to ORF Y1004 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (340 aa) (100.0%25 identity in 340 aa overlap);gbkey=CDS;gene=YPMT1.42;product=putative periplasmic protein;protein_id=CAB55224.1;transl_table=11
AL117211.1	EMBL	gene	44876	45022	.	-	.	ID=gene4224;Name=YMT1.42Ac;gbkey=Gene;gene=YMT1.42Ac;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	44876	45022	.	-	0	ID=cds4152;Parent=gene4224;Dbxref=GOA:Q9RID3,UniProtKB/TrEMBL:Q9RID3,NCBI_GP:CAB62369.1;Name=CAB62369.1;Note=YPMT1.42Ac%2C hypothetical protein%2C len: 48 aa%3B unknown function;gbkey=CDS;gene=YMT1.42Ac;product=hypothetical protein YPMT1.42Ac;protein_id=CAB62369.1;transl_table=11
AL117211.1	EMBL	gene	45098	45742	.	-	.	ID=gene4225;Name=YPMT1.43c;gbkey=Gene;gene=YPMT1.43c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	45098	45742	.	-	0	ID=cds4153;Parent=gene4225;Dbxref=GOA:O68758,UniProtKB/TrEMBL:O68758,NCBI_GP:CAB55225.1;Name=CAB55225.1;Note=YPMT1.43c%2C hypothetical protein%2C len: 214 aa%3B unknown function%2C identical to ORF Y1002 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (214 aa)%2C fasta scores%3B opt: 1449 z-score: 1765.6 E(): 0%2C 100.0%25 identity in 214 aa overlap / TR:O68758 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (74 aa) (100.0%25 identity in 74 aa overlap) which has a different putative start codon;gbkey=CDS;gene=YPMT1.43c;product=hypothetical protein YPMT1.43c;protein_id=CAB55225.1;transl_table=11
AL117211.1	EMBL	sequence_feature	45308	45308	.	+	.	ID=id10118;Note=difference: C is T in EMBL:AF053947 and in EMBL:AF074611;gbkey=misc_feature
AL117211.1	EMBL	repeat_region	45939	45958	.	+	.	ID=id10119;Note=iteron 1;gbkey=repeat_region
AL117211.1	EMBL	repeat_region	45960	45979	.	+	.	ID=id10120;Note=iteron 2;gbkey=repeat_region
AL117211.1	EMBL	repeat_region	45981	46000	.	+	.	ID=id10121;Note=iteron 3;gbkey=repeat_region
AL117211.1	EMBL	repeat_region	46002	46021	.	+	.	ID=id10122;Note=iteron 4;gbkey=repeat_region
AL117211.1	EMBL	repeat_region	46025	46044	.	+	.	ID=id10123;Note=iteron 5;gbkey=repeat_region
AL117211.1	EMBL	repeat_region	46322	46341	.	+	.	ID=id10124;Note=iteron 6;gbkey=repeat_region
AL117211.1	EMBL	repeat_region	46343	46362	.	+	.	ID=id10125;Note=iteron 7;gbkey=repeat_region
AL117211.1	EMBL	repeat_region	46364	46383	.	+	.	ID=id10126;Note=iteron 8;gbkey=repeat_region
AL117211.1	EMBL	repeat_region	46385	46404	.	+	.	ID=id10127;Note=iteron 9;gbkey=repeat_region
AL117211.1	EMBL	repeat_region	46406	46425	.	+	.	ID=id10128;Note=iteron 10;gbkey=repeat_region
AL117211.1	EMBL	repeat_region	46428	46447	.	+	.	ID=id10129;Note=iteron 11;gbkey=repeat_region
AL117211.1	EMBL	gene	46487	47551	.	+	.	ID=gene4226;Name=YPMT1.44;gbkey=Gene;gene=YPMT1.44;gene_biotype=protein_coding;gene_synonym=repA
AL117211.1	EMBL	CDS	46487	47551	.	+	0	ID=cds4154;Parent=gene4226;Dbxref=GOA:O68759,InterPro:IPR000525,UniProtKB/TrEMBL:O68759,NCBI_GP:CAB55226.1;Name=CAB55226.1;Note=YPMT1.44%2C repA%2C probable replication protein A%2C len: 354 aa%3B similar to many e.g. RP12_SALTI (EMBL:L01253) Salmonella typhi REPFIB replication protein A (325 aa)%2C fasta scores%3B opt: 1262 z-score: 1419.3 E(): 0%2C 63.9%25 identity in 299 aa overlap. Identical to repA (EMBL:AF074611) from Y.pestis KIM5 pMT1 (354 aa) (100.0%25 identity in 354 aa overlap) / TR:O68759 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (354 aa) (100.0%25 identity in 354 aa overlap);gbkey=CDS;gene=YPMT1.44;product=putative replication protein A;protein_id=CAB55226.1;transl_table=11
AL117211.1	EMBL	repeat_region	47552	47571	.	+	.	ID=id10130;Note=iteron 12;gbkey=repeat_region
AL117211.1	EMBL	repeat_region	47581	47600	.	+	.	ID=id10131;Note=iteron 13;gbkey=repeat_region
AL117211.1	EMBL	sequence_feature	47584	47585	.	+	.	ID=id10132;Note=difference: T is present in EMBL:AF053947 and in EMBL:AF074611;gbkey=misc_feature
AL117211.1	EMBL	repeat_region	47620	47639	.	+	.	ID=id10133;Note=iteron 14;gbkey=repeat_region
AL117211.1	EMBL	repeat_region	47653	47672	.	+	.	ID=id10134;Note=iteron 15;gbkey=repeat_region
AL117211.1	EMBL	repeat_region	47765	47784	.	+	.	ID=id10135;Note=iteron 16;gbkey=repeat_region
AL117211.1	EMBL	repeat_region	47803	47822	.	+	.	ID=id10136;Note=iteron 17;gbkey=repeat_region
AL117211.1	EMBL	repeat_region	47842	47861	.	+	.	ID=id10137;Note=iteron 18;gbkey=repeat_region
AL117211.1	EMBL	repeat_region	47889	47908	.	+	.	ID=id10138;Note=iteron 19;gbkey=repeat_region
AL117211.1	EMBL	repeat_region	47929	47948	.	+	.	ID=id10139;Note=iteron 20;gbkey=repeat_region
AL117211.1	EMBL	repeat_region	47970	47989	.	+	.	ID=id10140;Note=iteron 21;gbkey=repeat_region
AL117211.1	EMBL	repeat_region	48010	48029	.	+	.	ID=id10141;Note=iteron 22;gbkey=repeat_region
AL117211.1	EMBL	repeat_region	48050	48069	.	+	.	ID=id10142;Note=iteron 23;gbkey=repeat_region
AL117211.1	EMBL	repeat_region	48097	48116	.	+	.	ID=id10143;Note=iteron 24;gbkey=repeat_region
AL117211.1	EMBL	gene	48120	48335	.	-	.	ID=gene4227;Name=YPMT1.45c;gbkey=Gene;gene=YPMT1.45c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	48120	48335	.	-	0	ID=cds4155;Parent=gene4227;Dbxref=GOA:Q7ARD3,UniProtKB/TrEMBL:Q7ARD3,NCBI_GP:CAB55227.1;Name=CAB55227.1;Note=YPMT1.45c%2C hypothetical protein%2C len: 71 aa%3B unknown function%2C identical to ORF Y1119 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (71 aa)%2C fasta scores%3B opt: 453 z-score: 657.0 E(): 2.7e-29%2C 100.0%25 identity in 66 aa overlap / TR:O68760 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (66 aa) (100.0%25 identity in 66 aa overlap) which has a different putative start codon;gbkey=CDS;gene=YPMT1.45c;product=hypothetical protein YPMT1.45c;protein_id=CAB55227.1;transl_table=11
AL117211.1	EMBL	sequence_feature	48269	57266	.	+	.	ID=id10144;Note=equivalent to Y.pestis KIM5 plasmid pMT1 (EMBL:AF074611) from 100988 to 91991;gbkey=misc_feature
AL117211.1	EMBL	gene	48332	48667	.	-	.	ID=gene4228;Name=YPMT1.46c;gbkey=Gene;gene=YPMT1.46c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	48332	48667	.	-	0	ID=cds4156;Parent=gene4228;Dbxref=GOA:Q7ARD2,UniProtKB/TrEMBL:Q7ARD2,NCBI_GP:CAB55228.1;Name=CAB55228.1;Note=YPMT1.46c%2C hypothetical protein%2C len: 111 aa%3B unknown function%2C identical to ORF Y1118 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (111 aa)%2C fasta scores%3B opt: 730 z-score: 964.3 E(): 0%2C100.0%25 identity in 111 aa overlap / TR:O68761 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (86 aa) (100.0%25 identity in 86 aa overlap) which has a different putative start codon;gbkey=CDS;gene=YPMT1.46c;product=hypothetical protein YPMT1.46c;protein_id=CAB55228.1;transl_table=11
AL117211.1	EMBL	ribosome_entry_site	48340	48345	.	-	.	ID=id10145;Note=possible RBS;gbkey=regulatory;gene=YPMT1.46c;regulatory_class=ribosome_binding_site
AL117211.1	EMBL	gene	48664	48843	.	-	.	ID=gene4229;Name=YPMT1.46Ac;gbkey=Gene;gene=YPMT1.46Ac;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	48664	48843	.	-	0	ID=cds4157;Parent=gene4229;Dbxref=GOA:Q9RID2,UniProtKB/TrEMBL:Q9RID2,NCBI_GP:CAB62370.1;Name=CAB62370.1;Note=YPMT1.46Ac%2C hypothetical protein%2C len: 59 aa%3B unknown function;gbkey=CDS;gene=YPMT1.46Ac;product=hypothetical protein YPMT1.46Ac;protein_id=CAB62370.1;transl_table=11
AL117211.1	EMBL	gene	48884	49159	.	-	.	ID=gene4230;Name=YPMT1.46Bc;gbkey=Gene;gene=YPMT1.46Bc;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	48884	49159	.	-	0	ID=cds4158;Parent=gene4230;Dbxref=GOA:Q7ARA3,UniProtKB/TrEMBL:Q7ARA3,NCBI_GP:CAB62371.1;Name=CAB62371.1;Note=YPMT1.46Bc%2C hypothetical protein%2C len: 91 aa%3B unknown function%2C identical to ORF Y1117 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (91 aa)%2C fasta scores%3B opt: 620 z-score: 793.1 E(): 0%2C 100.0%25 identity in 91 aa overlap;gbkey=CDS;gene=YPMT1.46Bc;product=hypothetical protein YPMT1.46Bc;protein_id=CAB62371.1;transl_table=11
AL117211.1	EMBL	gene	49227	49637	.	-	.	ID=gene4231;Name=YPMT1.47c;gbkey=Gene;gene=YPMT1.47c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	49227	49637	.	-	0	ID=cds4159;Parent=gene4231;Dbxref=GOA:Q7ARD1,UniProtKB/TrEMBL:Q7ARD1,NCBI_GP:CAB55229.1;Name=CAB55229.1;Note=YPMT1.47c%2C hypothetical protein%2C len: 136 aa%3B unknown function%2C identical to ORF Y1116 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (136 aa)%2C fasta scores%3B opt: 935 z-score: 1186.7 E(): 0%2C 99.3%25 identity in 136 aa overlap / TR:O68762 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (98 aa) (100.0%25 identity in 98 aa overlap) which has a different putative start codon;gbkey=CDS;gene=YPMT1.47c;product=hypothetical protein YPMT1.47c;protein_id=CAB55229.1;transl_table=11
AL117211.1	EMBL	gene	49621	49992	.	-	.	ID=gene4232;Name=YPMT1.48c;gbkey=Gene;gene=YPMT1.48c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	49621	49992	.	-	0	ID=cds4160;Parent=gene4232;Dbxref=GOA:Q7ARD0,InterPro:IPR019701,UniProtKB/TrEMBL:Q7ARD0,NCBI_GP:CAB55230.1;Name=CAB55230.1;Note=YPMT1.48c%2C hypothetical protein%2C len: 123 aa%3B unknown function%2C similar to TR:Q38665 (EMBL:X78401)%2C ninX%2C bacteriophage P22 protein (112 aa)%2C fasta scores%3B opt: 298 z-score: 392.8 E(): 1.4e-14%2C 45.6%25 identity in 114 aa overlap. Identical to ORF Y1115 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (123 aa) (100.0%25 identity in 123 aa overlap);gbkey=CDS;gene=YPMT1.48c;product=hypothetical protein YPMT1.48c;protein_id=CAB55230.1;transl_table=11
AL117211.1	EMBL	ribosome_entry_site	49645	49649	.	-	.	ID=id10146;Note=possible RBS;gbkey=regulatory;gene=YPMT1.48c;regulatory_class=ribosome_binding_site
AL117211.1	EMBL	sequence_feature	49930	49931	.	+	.	ID=id10147;Note=difference: C is present in EMBL:AF053947;gbkey=misc_feature
AL117211.1	EMBL	ribosome_entry_site	49999	50004	.	-	.	ID=id10148;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL117211.1	EMBL	gene	50146	50976	.	-	.	ID=gene4233;Name=YPMT1.49c;gbkey=Gene;gene=YPMT1.49c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	50146	50976	.	-	0	ID=cds4161;Parent=gene4233;Dbxref=GOA:Q7ARC9,InterPro:IPR001107,UniProtKB/TrEMBL:Q7ARC9,NCBI_GP:CAB55231.1;Name=CAB55231.1;Note=YPMT1.49c%2C possible lipoprotein%2C len: 276 aa%3B unknown function%2C identical to ORF Y1114 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (276 aa)%2C fasta scores%3B opt: 1784 z-score: 1941.7 E(): 0%2C 100.0%25 identity in 276 aa overlap / TR:O68763 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (261 aa) (100.0%25 identity in 261 aa overlap) which has a different putative start codon. Contains probable coiled-coil from 190 to 236 (47 residues)(Max score: 1.666%2C probability 1.00). Contains probable N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site%2C so may be a lipoprotein;gbkey=CDS;gene=YPMT1.49c;product=putative lipoprotein;protein_id=CAB55231.1;transl_table=11
AL117211.1	EMBL	sequence_feature	50914	50946	.	-	.	ID=id10149;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=YPMT1.49c
AL117211.1	EMBL	gene	50980	51180	.	-	.	ID=gene4234;Name=YPMT1.49Ac;gbkey=Gene;gene=YPMT1.49Ac;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	50980	51180	.	-	0	ID=cds4162;Parent=gene4234;Dbxref=GOA:Q9RID1,UniProtKB/TrEMBL:Q9RID1,NCBI_GP:CAB62372.1;Name=CAB62372.1;Note=YPMT1.49Ac%2C hypothetical protein%2C len: 66 aa%3B unknown function;gbkey=CDS;gene=YPMT1.49Ac;product=hypothetical protein YPMT1.49Ac;protein_id=CAB62372.1;transl_table=11
AL117211.1	EMBL	ribosome_entry_site	50985	50990	.	-	.	ID=id10150;Note=possible RBS;gbkey=regulatory;gene=YPMT1.49Ac;regulatory_class=ribosome_binding_site
AL117211.1	EMBL	gene	51271	52347	.	-	.	ID=gene4235;Name=YPMT1.50c;gbkey=Gene;gene=YPMT1.50c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	51271	52347	.	-	0	ID=cds4163;Parent=gene4235;Dbxref=GOA:Q9RID0,InterPro:IPR013765,InterPro:IPR020587,InterPro:IPR027417,UniProtKB/TrEMBL:Q9RID0,NCBI_GP:CAB55232.1;Name=CAB55232.1;Note=YPMT1.50c%2C probable recombinase%2C len: 358 aa%3B similar to many e.g. RECA_THEAQ (EMBL:L20680)%2C recA%2C Thermus aquaticus recombinase (340 aa)%2C fasta scores%3B opt: 334 z-score: 395.7 E(): 9.9e-15%2C 36.0%25 identity in 317 aa overlap. Highly similar to ORF Y1113 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (358 aa) (99.7%25 identity in 358 aa overlap) / TR:O68764 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (358 aa) (99.7%25 identity in 358 aa overlap). Contains Pfam matches to entry PF00154 recA%2C recA bacterial DNA recombination proteins%2C scores 81.60%2C E-value 8.7e-22 and 55.50%2C E-value 1.5e-14. Contains PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=CDS;gene=YPMT1.50c;product=putative recombinase;protein_id=CAB55232.1;transl_table=11
AL117211.1	EMBL	sequence_feature	51532	51744	.	-	.	ID=id10151;Note=Pfam match to entry PF00154 recA%2C recA bacterial DNA recombination proteins%2C score 81.60%2C E-value 8.7e-22;gbkey=misc_feature;gene=YPMT1.50c
AL117211.1	EMBL	sequence_feature	52033	52212	.	-	.	ID=id10152;Note=Pfam match to entry PF00154 recA%2C recA bacterial DNA recombination proteins%2C score 55.50%2C E-value 1.5e-14;gbkey=misc_feature;gene=YPMT1.50c
AL117211.1	EMBL	sequence_feature	52153	52176	.	-	.	ID=id10153;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=YPMT1.50c
AL117211.1	EMBL	sequence_feature	51408	51408	.	+	.	ID=id10154;Note=difference: C is T in EMBL:AF053947 and in EMBL:AF074611;gbkey=misc_feature
AL117211.1	EMBL	gene	52350	52616	.	-	.	ID=gene4236;Name=YPMT1.50Ac;gbkey=Gene;gene=YPMT1.50Ac;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	52350	52616	.	-	0	ID=cds4164;Parent=gene4236;Dbxref=GOA:Q7ARA2,UniProtKB/TrEMBL:Q7ARA2,NCBI_GP:CAB62373.1;Name=CAB62373.1;Note=YPMT1.50Ac%2C hypothetical protein%2C len: 88 aa%3B unknown function%2C identical to ORF Y1112 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (88 aa)%2C fasta scores%3B opt: 545 z-score: 761.5 E(): 0%2C 100.0%25 identity in 88 aa overlap;gbkey=CDS;gene=YPMT1.50Ac;product=hypothetical protein YPMT1.50Ac;protein_id=CAB62373.1;transl_table=11
AL117211.1	EMBL	ribosome_entry_site	52355	52359	.	-	.	ID=id10155;Note=possible RBS;gbkey=regulatory;gene=YPMT1.50Ac;regulatory_class=ribosome_binding_site
AL117211.1	EMBL	gene	52616	53560	.	-	.	ID=gene4237;Name=YPMT1.51c;gbkey=Gene;gene=YPMT1.51c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	52616	53560	.	-	0	ID=cds4165;Parent=gene4237;Dbxref=GOA:Q9RIC9,InterPro:IPR002421,InterPro:IPR008918,InterPro:IPR020045,InterPro:IPR020046,InterPro:IPR029060,UniProtKB/TrEMBL:Q9RIC9,NCBI_GP:CAB55233.1;Name=CAB55233.1;Note=YPMT1.51c%2C possible exonuclease%2C len: 314 aa%3B similar to the N-terminal (5'-3' exonulcease) domain of many DNA polymerase I proteins e.g. DPO1_STRPN (EMBL:J04479)%2C polA%2C Streptococcus pneumoniae DNA polymerase I (877 aa)%2C fasta scores%3B opt: 334 z-score: 393.7 E(): 1.3e-14%2C 28.0%25 identity in 304 aa overlap. Identical to ORF Y1111 (EMBL:AF07461) from Y.pestis KIM5 pMT1 (331 aa) (99.7%25 identity in 331 aa overlap) / TR:O68765 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (289 aa) (100.0%25 identity in 289 aa overlap) which has a different putative start codon. Contains Pfam match to entry PF01367 5_3_exonuclease%2C 5'-3' exonuclease%2C score -16.20%2C E-value 7.6e-11;gbkey=CDS;gene=YPMT1.51c;product=putative exonuclease;protein_id=CAB55233.1;transl_table=11
AL117211.1	EMBL	sequence_feature	52652	53557	.	-	.	ID=id10156;Note=Pfam match to entry PF01367 5_3_exonuclease%2C 5'-3' exonuclease%2C score -16.20%2C E-value 7.6e-11;gbkey=misc_feature;gene=YPMT1.51c
AL117211.1	EMBL	ribosome_entry_site	53568	53572	.	-	.	ID=id10157;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL117211.1	EMBL	gene	53621	54649	.	-	.	ID=gene4238;Name=YPMT1.52c;gbkey=Gene;gene=YPMT1.52c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	53621	54649	.	-	0	ID=cds4166;Parent=gene4238;Dbxref=GOA:Q9RIC8,UniProtKB/TrEMBL:Q9RIC8,NCBI_GP:CAB55234.1;Name=CAB55234.1;Note=YPMT1.52c%2C hypothetical protein%2C len: 342 aa%3B unknown function%2C identical to ORF Y1110 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (359 aa)%2C fasta scores%3B opt: 2214 z-score: 2315.7 E(): 0%2C 100.0%25 identity in 342 aa overlap which has a different putative start codon / TR:O68766 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (342 aa) (100.0%25 identity in 342 aa overlap);gbkey=CDS;gene=YPMT1.52c;product=hypothetical protein YPMT1.52c;protein_id=CAB55234.1;transl_table=11
AL117211.1	EMBL	ribosome_entry_site	54656	54660	.	-	.	ID=id10158;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL117211.1	EMBL	gene	54769	55242	.	-	.	ID=gene4239;Name=YPMT1.53c;gbkey=Gene;gene=YPMT1.53c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	54769	55242	.	-	0	ID=cds4167;Parent=gene4239;Dbxref=GOA:Q9RIC7,UniProtKB/TrEMBL:Q9RIC7,NCBI_GP:CAB55235.1;Name=CAB55235.1;Note=YPMT1.53c%2C hypothetical protein%2C len: 157 aa%3B unknown function%2C highly similar to ORF Y1109 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (157 aa)%2C fasta scores%3B opt: 981 z-score: 1141.4 E(): 0%2C 98.7%25 identity in 157 aa overlap / TR:O68767 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (143 aa) (99.3%25 identity in 143 aa overlap) which has a different putative start codon. Contains probable coiled-coil from 43 to 83 (41 residues) (Max score: 1.683%2C probability 1.00);gbkey=CDS;gene=YPMT1.53c;product=hypothetical protein YPMT1.53c;protein_id=CAB55235.1;transl_table=11
AL117211.1	EMBL	sequence_feature	55020	55020	.	+	.	ID=id10159;Note=difference: C is A in EMBL:AF053947 and in EMBL:AF074611;gbkey=misc_feature
AL117211.1	EMBL	sequence_feature	55208	55208	.	+	.	ID=id10160;Note=difference: G is T in EMBL:AF053947 and in EMBL:AF074611;gbkey=misc_feature
AL117211.1	EMBL	gene	55745	56308	.	+	.	ID=gene4240;Name=YPMT1.54;gbkey=Gene;gene=YPMT1.54;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	55745	56308	.	+	0	ID=cds4168;Parent=gene4240;Dbxref=GOA:O68768,UniProtKB/TrEMBL:O68768,NCBI_GP:CAB55236.1;Name=CAB55236.1;Note=YPMT1.54%2C hypothetical protein%2C len: 187 aa%3B unknown function%2C identical to ORF Y1108 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (187 aa)%2C fasta scores%3B opt: 1224 z-score: 1434.0 E(): 0%2C 100.0%25 identity in 187 aa overlap / TR:O68768 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (187 aa) (100.0%25 identity in 187 aa overlap). Contains probable helix-turn-helix motif at aa 81-102 (Score 1497%2C +4.29 SD);gbkey=CDS;gene=YPMT1.54;product=hypothetical protein YPMT1.54;protein_id=CAB55236.1;transl_table=11
AL117211.1	EMBL	gene	56338	56781	.	-	.	ID=gene4241;Name=YPMT1.55c;gbkey=Gene;gene=YPMT1.55c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	56338	56781	.	-	0	ID=cds4169;Parent=gene4241;Dbxref=GOA:O68769,UniProtKB/TrEMBL:O68769,NCBI_GP:CAB55237.1;Name=CAB55237.1;Note=YPMT1.55c%2C hypothetical protein%2C len: 147 aa%3B unknown function%2C identical to ORF Y1107 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (147 aa)%2C fasta scores%3B opt: 942 z-score: 1149.0 E(): 0%2C 100.0%25 identity in 147 aa overlap / TR:O68769 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (147 aa) (100.0%25 identity in 147 aa overlap);gbkey=CDS;gene=YPMT1.55c;product=hypothetical protein YPMT1.55c;protein_id=CAB55237.1;transl_table=11
AL117211.1	EMBL	pseudogene	56778	57266	.	-	.	ID=gene4242;Name=YPMT1.56c;gbkey=Gene;gene=YPMT1.56c;gene_biotype=pseudogene;pseudo=true
AL117211.1	EMBL	CDS	56778	57266	.	-	0	ID=cds4170;Parent=gene4242;Dbxref=PSEUDO:CAB55238.1;Note=YPMT1.56c%2C probable DNA polymerase III pseudogene%2C len: 489 bp%3B identical to the C-terminus of putative DNA polymerase III%2C alpha subunit%2C ORF Y1106 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (1174 aa) / TR:O68770 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (1135 aa). YPMT1.89 is the N-terminal region of the same gene;gbkey=CDS;gene=YPMT1.56c;product=putative DNA polymerase III pseudogene;pseudo=true;transl_table=11
AL117211.1	EMBL	repeat_region	57266	59220	.	-	.	ID=id10161;Note=IS100 element;gbkey=repeat_region
AL117211.1	EMBL	sequence_feature	57267	81056	.	+	.	ID=id10162;Note=identical to Y.pestis KIM5 plasmid pMT1 (EMBL:AF074611) from 74730 to 50942%2C except where noted;gbkey=misc_feature
AL117211.1	EMBL	gene	57333	58115	.	-	.	ID=gene4243;Name=YPMT1.57c;gbkey=Gene;gene=YPMT1.57c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	57333	58115	.	-	0	ID=cds4171;Parent=gene4243;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAB55239.1;Name=CAB55239.1;Note=YPMT1.57c%2C IS100 transposase%2C len: 260 aa%3B identical many other IS100 transposases e.g. TR:P74994 (EMBL:U59875) Yersinia pestis pesticin plasmid putative insertion sequence IS100 ORFB (259 aa)%2C fasta scores%3B opt: 1658 z-score: 1841.0 E(): 0%2C 100.0%25 identity in 259 aa overlap with a different putative start codon. Contains PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=CDS;gene=YPMT1.57c;product=putative IS100 transposase;protein_id=CAB55239.1;transl_table=11
AL117211.1	EMBL	sequence_feature	57765	57788	.	-	.	ID=id10163;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=YPMT1.57c
AL117211.1	EMBL	gene	58112	59134	.	-	.	ID=gene4244;Name=YPMT1.58c;gbkey=Gene;gene=YPMT1.58c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	58112	59134	.	-	0	ID=cds4172;Parent=gene4244;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAB55240.1;Name=CAB55240.1;Note=YPMT1.58c%2C IS100 transposase%2C len: 340 aa%3B identical to many other IS100 transposases e.g. TR:P74993 (EMBL:U59875) Yersinia pestis pesticin plasmid putative insertion sequence IS100 ORFA (340 aa)%2C fasta scores%3B opt: 2328 z-score: 2755.3 E(): 0%2C 100.0%25 identity in 340 aa overlap. Contains probable helix-turn-helix motif at aa 19-40 (Score 2045%2C +6.15 SD). Contains Pfam match to entry PF00239 recombinase%2C Site-specific recombinases%2C score 25.70%2C E-value 4.8e-06;gbkey=CDS;gene=YPMT1.58c;product=putative transposase;protein_id=CAB55240.1;transl_table=11
AL117211.1	EMBL	sequence_feature	59027	59110	.	-	.	ID=id10164;Note=Pfam match to entry PF00239 recombinase%2C Site-specific recombinases%2C score 25.70%2C E-value 4.8e-06;gbkey=misc_feature;gene=YPMT1.58c
AL117211.1	EMBL	sequence_feature	59221	81506	.	+	.	ID=id10165;Note=identical to Y.pestis KIM5 plasmid pMT1 (EMBL:AF053947) from 100984 to 79151%2C except where noted;gbkey=misc_feature
AL117211.1	EMBL	gene	59258	61267	.	-	.	ID=gene4245;Name=YPMT1.59c;gbkey=Gene;gene=YPMT1.59c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	59258	61267	.	-	0	ID=cds4173;Parent=gene4245;Dbxref=GOA:O68794,InterPro:IPR003115,UniProtKB/TrEMBL:O68794,NCBI_GP:CAB55241.1;Name=CAB55241.1;Note=YPMT1.59c%2C possible DNA-binding protein%2C len: 669 aa%3B unknown function%2C similar to many hypothetical proteins e.g. TR:O82909 (EMBL:AB011549) Escherichia coli hypothetical protein from plasmid pO157 (652 aa)%2C fasta scores%3B opt: 2220 z-score: 2530.2 E(): 0%2C 52.9%25 identity in 660 aa overlap. Identical to ORF Y1092 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (669 aa) (100.0%25 identity in 669 aa overlap) / TR:O68794 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (669 aa) (100.0%25 identity in 669 aa overlap). Contains probable helix-turn-helix motif at aa 156-177 (Score 1078%2C +2.86 SD). Contains a {gct}4 repeat;gbkey=CDS;gene=YPMT1.59c;product=putative DNA-binding protein;protein_id=CAB55241.1;transl_table=11
AL117211.1	EMBL	gene	61340	61570	.	-	.	ID=gene4246;Name=YPMT1.60c;gbkey=Gene;gene=YPMT1.60c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	61340	61570	.	-	0	ID=cds4174;Parent=gene4246;Dbxref=GOA:Q7ARC3,InterPro:IPR009253,InterPro:IPR015146,NCBI_GP:CAB55242.1;Name=CAB55242.1;Note=YPMT1.60c%2C conserved hypothetical protein%2C len: 76 aa%3B unknown function%2C similar to e.g. ORF L7085 (EMBL:AF074613) Escherichia coli hypothetical protein from plasmid pO157 (86 aa)%2C fasta scores%3B opt: 318 z-score: 470.3 E(): 6.8e-19%2C 62.3%25 identity in 77 aa overlap and YKFF_ECOLI (EMBL:AE000133) Escherichia coli hypothetical protein (79 aa) (55.4%25 identity in 74 aa overlap). Identical to ORF Y1091 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (76 aa) (100.0%25 identity in 76 aa overlap) / TR:O68793 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (76 aa) (100.0%25 identity in 76 aa overlap);gbkey=CDS;gene=YPMT1.60c;product=hypothetical protein YPMT1.60c;protein_id=CAB55242.1;transl_table=11
AL117211.1	EMBL	sequence_feature	61892	61892	.	+	.	ID=id10166;Note=difference: C is absent from EMBL:AF053947;gbkey=misc_feature
AL117211.1	EMBL	sequence_feature	61939	61939	.	+	.	ID=id10167;Note=difference: G is C in EMBL:AF053947;gbkey=misc_feature
AL117211.1	EMBL	sequence_feature	61942	61946	.	+	.	ID=id10168;Note=difference: CGGAG is ATTGT in EMBL:AF053947;gbkey=misc_feature
AL117211.1	EMBL	gene	62283	62789	.	-	.	ID=gene4247;Name=YPMT1.61c;gbkey=Gene;gene=YPMT1.61c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	62283	62789	.	-	0	ID=cds4175;Parent=gene4247;Dbxref=GOA:O68792,InterPro:IPR009899,UniProtKB/TrEMBL:O68792,NCBI_GP:CAB55243.1;Name=CAB55243.1;Note=YPMT1.61c%2C probable antirestriction protein%2C len: 168 aa%3B similar to TR:Q52021 (EMBL:U72482)%2C ardA%2C Escherichia coli antirestriction protein from plasmid pKM101 (169 aa)%2C fasta scores%3B opt: 698 z-score: 847.0 E(): 0%2C 59.8%25 identity in 164 aa overlap. Identical to ORF Y1090 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (168 aa) (100.0%25 identity in 168 aa overlap) / TR:O68792 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (168 aa) (100.0%25 identity in 168 aa overlap);gbkey=CDS;gene=YPMT1.61c;product=putative antirestriction protein;protein_id=CAB55243.1;transl_table=11
AL117211.1	EMBL	repeat_region	62824	62854	.	+	.	ID=id10169;Note=repeat 1%3B 31 bp imperfect inverted repeat;gbkey=repeat_region
AL117211.1	EMBL	sequence_feature	62994	62994	.	+	.	ID=id10170;Note=difference: T is C in EMBL:AF053947 and in EMBL:AF074611;gbkey=misc_feature
AL117211.1	EMBL	repeat_region	63038	63068	.	-	.	ID=id10171;Note=repeat 1%3B 31 bp imperfect inverted repeat;gbkey=repeat_region
AL117211.1	EMBL	gene	63188	63967	.	-	.	ID=gene4248;Name=YPMT1.62c;gbkey=Gene;gene=YPMT1.62c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	63188	63967	.	-	0	ID=cds4176;Parent=gene4248;Dbxref=GOA:O68791,UniProtKB/TrEMBL:O68791,NCBI_GP:CAB55244.1;Name=CAB55244.1;Note=YPMT1.62c%2C conserved hypothetical protein%2C len: 259 aa%3B unknown function%2C similar to TR:O82899 (EMBL:AB011549) Escherichia coli hypothetical protein from plasmid pO157 (258 aa)%2C fasta scores%3B opt: 998 z-score: 1227.5 E(): 0%2C 59.3%25 identity in 258 aa overlap. Identical to ORF Y1088 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (259 aa) (100.0%25 identity in 259 aa overlap) / TR:O68791 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (259 aa) (100.0%25 identity in 259 aa overlap);gbkey=CDS;gene=YPMT1.62c;product=hypothetical protein YPMT1.62c;protein_id=CAB55244.1;transl_table=11
AL117211.1	EMBL	gene	64021	64512	.	-	.	ID=gene4249;Name=YPMT1.63c;gbkey=Gene;gene=YPMT1.63c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	64021	64512	.	-	0	ID=cds4177;Parent=gene4249;Dbxref=GOA:Q7ARC0,InterPro:IPR009811,UniProtKB/TrEMBL:Q7ARC0,NCBI_GP:CAB55245.1;Name=CAB55245.1;Note=YPMT1.63c%2C conserved hypothetical protein%2C len: 163 aa%3B unknown function%2C similar to TR:O82898 (EMBL:AB011549) Escherichia coli hypothetical protein from plasmid pO157 (184 aa)%2C opt: 587 z-score: 704.6 E(): 6.2e-32%2C 53.3%25 identity in 169 aa overlap. Identical to ORF Y1087 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (163 aa) (100.0%25 identity in 163 aa overlap) / TR:O68790 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (139 aa) (100.0%25 identity in 139 aa overlap) which has a different putative start codon;gbkey=CDS;gene=YPMT1.63c;product=hypothetical protein YPMT1.63c;protein_id=CAB55245.1;transl_table=11
AL117211.1	EMBL	gene	64451	64672	.	-	.	ID=gene4250;Name=YPMT1.63Ac;gbkey=Gene;gene=YPMT1.63Ac;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	64451	64672	.	-	0	ID=cds4178;Parent=gene4250;Dbxref=GOA:Q7ARA1,UniProtKB/TrEMBL:Q7ARA1,NCBI_GP:CAB62374.1;Name=CAB62374.1;Note=YPMT1.63Ac%2C conserved hypothetical protein%2C len: 73 aa%3B unknown function%2C similar to TR:AAD47179 (EMBL:AF106329) Escherichia coli hypothetical protein from the F plasmid (73 aa)%2C fasta scores%3B opt: 400 z-score: 634.7 E(): 5.7e-28%2C 82.2%25 identity in 73 aa overlap and to TR:Q9Z4D9 (EMBL:AB021078)%2C yceA%2C Escherichia coli hypothetical protein from plasmid IncI1 ColIb-P9 (73 aa)%2C fasta scores opt: 368 z-score: 585.5 E(): 3.1e-25%2C 75.3%25 identity in 73 aa overlap. Identical to ORF Y1086 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (100.0%25 identity in 73 aa overlap);gbkey=CDS;gene=YPMT1.63Ac;product=hypothetical protein YPMT1.63Ac;protein_id=CAB62374.1;transl_table=11
AL117211.1	EMBL	gene	64672	65349	.	-	.	ID=gene4251;Name=YPMT1.64c;gbkey=Gene;gene=YPMT1.64c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	64672	65349	.	-	0	ID=cds4179;Parent=gene4251;Dbxref=GOA:Q9R3Z4,InterPro:IPR001091,InterPro:IPR002052,InterPro:IPR002941,InterPro:IPR029063,UniProtKB/TrEMBL:Q9R3Z4,NCBI_GP:CAB55246.1;Name=CAB55246.1;Note=YPMT1.64c%2C possible DNA methylase%2C len: 225 aa%3B similar to many e.g. MT22_STRPN (EMBL:M14339)%2C dpnA%2C Streptococcus pneumoniae modification methylase (adenine-specific) (268 aa)%2C fasta scores%3B opt: 189 z-score: 238.7 E(): 5.4e-06%2C 27.1%25 identity in 240 aa overlap. Identical to ORF Y1085 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (225 aa) (100.0%25 identity in 225 aa overlap) / TR:O68789 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (213 aa) (100.0%25 identity in 213 aa overlap). Contains PS00092 N-6 Adenine-specific DNA methylases signature;gbkey=CDS;gene=YPMT1.64c;product=putative DNA methylase;protein_id=CAB55246.1;transl_table=11
AL117211.1	EMBL	sequence_feature	65260	65280	.	-	.	ID=id10172;Note=PS00092 N-6 Adenine-specific DNA methylases signature;gbkey=misc_feature;gene=YPMT1.64c
AL117211.1	EMBL	repeat_region	65383	65408	.	+	.	ID=id10173;Note=repeat 2%3B 26 bp imperfect inverted repeat;gbkey=repeat_region
AL117211.1	EMBL	repeat_region	65591	65616	.	-	.	ID=id10174;Note=repeat 2%3B 26 bp imperfect inverted repeat;gbkey=repeat_region
AL117211.1	EMBL	gene	65742	66050	.	+	.	ID=gene4252;Name=YPMT1.65;gbkey=Gene;gene=YPMT1.65;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	65742	66050	.	+	0	ID=cds4180;Parent=gene4252;Dbxref=GOA:Q7ARB9,UniProtKB/TrEMBL:Q7ARB9,NCBI_GP:CAB55247.1;Name=CAB55247.1;Note=YPMT1.65%2C hypothetical protein%2C len: 102 aa%3B unknown function%2C identical to ORF Y1083 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (102 aa)%2C fasta scores%3B opt: 674 z-score: 874.5 E(): 0%2C 100.0%25 identity in 102 aa overlap;gbkey=CDS;gene=YPMT1.65;product=hypothetical protein YPMT1.65;protein_id=CAB55247.1;transl_table=11
AL117211.1	EMBL	gene	66212	67609	.	-	.	ID=gene4253;Name=YPMT1.66c;gbkey=Gene;gene=YPMT1.66c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	66212	67609	.	-	0	ID=cds4181;Parent=gene4253;Dbxref=GOA:Q7ARB8,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:Q7ARB8,NCBI_GP:CAB55248.1;Name=CAB55248.1;Note=YPMT1.66c%2C possible DNA-binding protein%2C len: 465 aa%3B unknown function%2C identical to ORF Y1080 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (465 aa)%2C fasta scores%3B opt: 3044 z-score: 3505.7 E(): 0%2C 100.0%25 identity in 465 aa overlap. Contains probable helix-turn-helix motif at aa 162-183 (Score 1554%2C +4.48 SD). Contains PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=CDS;gene=YPMT1.66c;product=putative DNA-binding protein;protein_id=CAB55248.1;transl_table=11
AL117211.1	EMBL	sequence_feature	67415	67438	.	-	.	ID=id10175;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=YPMT1.66c
AL117211.1	EMBL	gene	67988	68959	.	-	.	ID=gene4254;Name=YPMT1.67c;gbkey=Gene;gene=YPMT1.67c;gene_biotype=protein_coding;gene_synonym=parB
AL117211.1	EMBL	CDS	67988	68959	.	-	0	ID=cds4182;Parent=gene4254;Dbxref=GOA:O68788,InterPro:IPR003115,InterPro:IPR004437,InterPro:IPR014884,UniProtKB/TrEMBL:O68788,NCBI_GP:CAB55249.1;Name=CAB55249.1;Note=YPMT1.67c%2C parB%2C probable partitioning protein B%2C len: 323 aa%3B similar to e.g. PARB_ECOLI (EMBL:X02954)%2C parB%2C Escherichia coli plasmid partition parB protein from plasmid P1 (343 aa)%2C fasta scores%3B opt: 725 z-score: 818.2 E(): 0%2C 44.4%25 identity in 302 aa overlap. Also similar to VIRB_SHIFL (EMBL:X14340)%2C virB%2C invE%2C Shigella flexneri virulence regulon transcriptional activator from plasmid pWR100 (309 aa) (43.1%25 identity in 297 aa overlap). Identical to parB (EMBL:AF074611) from Y.pestis KIM5 pMT1 (323 aa) (100.0%25 identity in 323 aa overlap) / TR:O68788 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (323 aa) (100.0%25 identity in 323 aa overlap). Contains probable coiled-coil from 203 to 236 (34 residues) (Max score: 1.447%2C probability 0.87);gbkey=CDS;gene=YPMT1.67c;product=putative partitioning protein B;protein_id=CAB55249.1;transl_table=11
AL117211.1	EMBL	gene	68956	70161	.	-	.	ID=gene4255;Name=YPMT1.68c;gbkey=Gene;gene=YPMT1.68c;gene_biotype=protein_coding;gene_synonym=parA
AL117211.1	EMBL	CDS	68956	70161	.	-	0	ID=cds4183;Parent=gene4255;Dbxref=GOA:Q9RIC6,InterPro:IPR002586,InterPro:IPR027417,UniProtKB/TrEMBL:Q9RIC6,NCBI_GP:CAB55250.1;Name=CAB55250.1;Note=YPMT1.68c%2C parA%2C probable partitioning protein A%2C len: 401 aa%3B similar to PARA_ECOLI (EMBL:K02380)%2C parA%2C Escherichia coli plasmid partition parA protein from plasmid P1 (398 aa)%2C fasta scores%3B opt: 1566 z-score: 1814.5 E(): 0%2C 57.4%25 identity in 394 aa overlap. Identical to parA (EMBL:AF074611) from Y.pestis KIM5 pMT1 (424 aa) (100.0%25 identity in 401 aa overlap) which has a different putative start codon / TR:O68787 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (401 aa) (100.0%25 identity in 401 aa overlap). Contains Pfam match to entry PF00991 ParA%2C ParA family ATPase%2C score 30.80%2C E-value 3.3e-06;gbkey=CDS;gene=YPMT1.68c;product=putative partitioning protein A;protein_id=CAB55250.1;transl_table=11
AL117211.1	EMBL	sequence_feature	69217	69528	.	-	.	ID=id10176;Note=Pfam match to entry PF00991 ParA%2C ParA family ATPase%2C score 30.80%2C E-value 3.3e-06;gbkey=misc_feature;gene=YPMT1.68c
AL117211.1	EMBL	gene	70463	70690	.	+	.	ID=gene4256;Name=YPMT1.68A;gbkey=Gene;gene=YPMT1.68A;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	70463	70690	.	+	0	ID=cds4184;Parent=gene4256;Dbxref=GOA:Q9RIC5,InterPro:IPR006442,UniProtKB/TrEMBL:Q9RIC5,NCBI_GP:CAB62375.1;Name=CAB62375.1;Note=YPMT1.68A%2C hypothetical protein%2C len: 75 aa%3B unknown function%2C identical to ORF Y1075 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (81 aa)%2C but with a different putative start codon%2C fasta scores%3B opt: 455 z-score: 626.1 E(): 1.7e-27%2C 100.0%25 identity in 75 aa overlap;gbkey=CDS;gene=YPMT1.68A;product=hypothetical protein YPMT1.68A;protein_id=CAB62375.1;transl_table=11
AL117211.1	EMBL	gene	70690	71016	.	+	.	ID=gene4257;Name=YPMT1.69;gbkey=Gene;gene=YPMT1.69;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	70690	71016	.	+	0	ID=cds4185;Parent=gene4257;Dbxref=GOA:Q7ARB6,InterPro:IPR007712,UniProtKB/TrEMBL:Q7ARB6,NCBI_GP:CAB55251.1;Name=CAB55251.1;Note=YPMT1.69%2C hypothetical protein%2C len: 108 aa%3B unknown function%2C identical to ORF Y1074 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (108 aa)%2C fasta scores%3B opt: 722 z-score: 914.3 E(): 0%2C 100.0%25 identity in 108 aa overlap;gbkey=CDS;gene=YPMT1.69;product=hypothetical protein YPMT1.69;protein_id=CAB55251.1;transl_table=11
AL117211.1	EMBL	gene	71216	71836	.	+	.	ID=gene4258;Name=YPMT1.70;gbkey=Gene;gene=YPMT1.70;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	71216	71836	.	+	0	ID=cds4186;Parent=gene4258;Dbxref=GOA:Q7ARB5,InterPro:IPR006118,InterPro:IPR006119,UniProtKB/TrEMBL:Q7ARB5,NCBI_GP:CAB55252.1;Name=CAB55252.1;Note=YPMT1.70%2C probable resolvase%2C len: 206 aa%3B similar to many e.g. PAA4_ECOLI (EMBL:M59825)%2C parA%2C Escherichia coli partition resolvase from plasmid INCP-beta RP4 (219 aa)%2C fasta scores%3B opt: 396 z-score: 474.0 E(): 4.2e-19%2C 39.4%25 identity in 198 aa overlap. Identical to ORF Y1073 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (206 aa) (100.0%25 identity in 206 aa overlap). Contains probable helix-turn-helix motif at aa 182-203 (Score 1811%2C +5.36 SD). Contains Pfam match to entry PF00239 recombinase%2C Site-specific recombinases%2C score 86.80%2C E-value 4.5e-23%2C PS00397 Site-specific recombinases active site and PS00398 Site-specific recombinases signature 2;gbkey=CDS;gene=YPMT1.70;product=putative resolvase;protein_id=CAB55252.1;transl_table=11
AL117211.1	EMBL	sequence_feature	71225	71812	.	+	.	ID=id10177;Note=Pfam match to entry PF00239 recombinase%2C Site-specific recombinases%2C score 86.80%2C E-value 4.5e-23;gbkey=misc_feature;gene=YPMT1.70
AL117211.1	EMBL	sequence_feature	71231	71257	.	+	.	ID=id10178;Note=PS00397 Site-specific recombinases active site;gbkey=misc_feature;gene=YPMT1.70
AL117211.1	EMBL	sequence_feature	71399	71437	.	+	.	ID=id10179;Note=PS00398 Site-specific recombinases signature 2;gbkey=misc_feature;gene=YPMT1.70
AL117211.1	EMBL	gene	71857	72843	.	+	.	ID=gene4259;Name=YPMT1.71;gbkey=Gene;gene=YPMT1.71;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	71857	72843	.	+	0	ID=cds4187;Parent=gene4259;Dbxref=GOA:Q7ARB4,InterPro:IPR006842,InterPro:IPR010106,UniProtKB/TrEMBL:Q7ARB4,NCBI_GP:CAB55253.1;Name=CAB55253.1;Note=YPMT1.71%2C conserved hypothetical protein%2C len: 328 aa%3B similar to YADD/YFAD/YHGA/YJIP family e.g. YHGA_ECOLI (EMBL:U18997)%2C yhgA%2C Escherichia coli hypothetical protein (292 aa)%2C fasta scores%3B opt: 1001 z-score: 1151.9 E(): 0%2C 50.5%25 identity in 309 aa overlap. Identical to ORF Y1072 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (328 aa) (99.7%25 identity in 328 aa overlap) / TR:O68786 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (285 aa) (100.0%25 identity in 285 aa overlap) which has a different putative start codon;gbkey=CDS;gene=YPMT1.71;product=hypothetical protein YPMT1.71;protein_id=CAB55253.1;transl_table=11
AL117211.1	EMBL	gene	72866	73141	.	-	.	ID=gene4260;Name=YPMT1.72c;gbkey=Gene;gene=YPMT1.72c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	72866	73141	.	-	0	ID=cds4188;Parent=gene4260;Dbxref=GOA:Q9RIC4,UniProtKB/TrEMBL:Q9RIC4,NCBI_GP:CAB55254.1;Name=CAB55254.1;Note=YPMT1.72c%2C hypothetical protein%2C len: 91 aa%3B unknown function%2C identical to ORF Y1071 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (96 aa)%2C fasta scores%3B opt: 605 z-score: 787.0 E(): 0%2C 100.0%25 identity in 91 aa overlap / TR:O68785 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (63 aa) (100.0%25 identity in 63 aa overlap) which have different putative start codons;gbkey=CDS;gene=YPMT1.72c;product=hypothetical protein YPMT1.72c;protein_id=CAB55254.1;transl_table=11
AL117211.1	EMBL	ribosome_entry_site	73150	73154	.	-	.	ID=id10180;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL117211.1	EMBL	repeat_region	73165	73200	.	+	.	ID=id10181;Note=repeat 3%3B 36 bp imperfect inverted repeat;gbkey=repeat_region
AL117211.1	EMBL	sequence_feature	73419	73419	.	+	.	ID=id10182;Note=difference: A is absent from EMBL:AF053947 and from EMBL:AF074611;gbkey=misc_feature
AL117211.1	EMBL	repeat_region	73437	73472	.	-	.	ID=id10183;Note=repeat 3%3B 36 bp imperfect inverted repeat;gbkey=repeat_region
AL117211.1	EMBL	gene	73881	74369	.	+	.	ID=gene4261;Name=YPMT1.73;gbkey=Gene;gene=YPMT1.73;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	73881	74369	.	+	0	ID=cds4189;Parent=gene4261;Dbxref=GOA:Q7ARB3,InterPro:IPR001736,InterPro:IPR025202,UniProtKB/TrEMBL:Q7ARB3,NCBI_GP:CAB55255.1;Name=CAB55255.1;Note=YPMT1.73%2C conserved hypothetical protein%2C len: 162 aa%3B similar to possible endonucleases e.g. TR:Q46707 (EMBL:U09868)%2C nuc%2C Escherichia coli ORF from plasmid pKM101 (177 aa)%2C fasta scores%3B opt: 380 z-score: 484.0 E(): 1.2e-19%2C 38.1%25 identity in 155 aa overlap and TR:O07482 (EMBL:Y13308)%2C nuc%2C Yersinia enterocolitica ORF (181 aa) (37.8%25 identity in 164 aa overlap). Identical to ORF Y1070 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (162 aa) (100.0%25 identity in 162 aa overlap);gbkey=CDS;gene=YPMT1.73;product=hypothetical protein YPMT1.73;protein_id=CAB55255.1;transl_table=11
AL117211.1	EMBL	ribosome_entry_site	74595	74599	.	+	.	ID=id10184;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL117211.1	EMBL	gene	74612	76210	.	+	.	ID=gene4262;Name=YPMT1.74;gbkey=Gene;gene=YPMT1.74;gene_biotype=protein_coding;gene_synonym=ymt
AL117211.1	EMBL	CDS	74612	76210	.	+	0	ID=cds4190;Parent=gene4262;Dbxref=GOA:Q9RIC3,InterPro:IPR001736,UniProtKB/TrEMBL:Q9RIC3,NCBI_GP:CAB55256.1;Name=CAB55256.1;Note=YPMT1.74%2C ymt%2C murine toxin%2C len: 532 aa%3B similar to TR:Q56977 (EMBL:X92727)%2C ymt%2C Yersinia pestis murine toxin from plasmid pFRA (531 aa)%2C fasta scores%3B opt: 3587 z-score: 4109.7 E(): 0%2C 99.6%25 identity in 532 aa overlap. Identical to ymt (EMBL:AF074611) from Y.pestis KIM5 pMT1 (587 aa) (100.0%25 identity in 532 aa overlap) which has a different putative start codon / TR:O68784 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (532 aa) (100.0%25 identity in 532 aa overlap). Contains Pfam match to entry PF00614 PLDc%2C Phospholipase D. Active site motif%2C score 20.90%2C E-value 0.029;gbkey=CDS;gene=YPMT1.74;product=murine toxin;protein_id=CAB55256.1;transl_table=11
AL117211.1	EMBL	sequence_feature	76004	76087	.	+	.	ID=id10185;Note=Pfam match to entry PF00614 PLDc%2C Phospholipase D. Active site motif%2C score 20.90%2C E-value 0.029;gbkey=misc_feature;gene=YPMT1.74
AL117211.1	EMBL	gene	76455	76925	.	-	.	ID=gene4263;Name=YPMT1.75c;gbkey=Gene;gene=YPMT1.75c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	76455	76925	.	-	0	ID=cds4191;Parent=gene4263;Dbxref=GOA:Q7ARB2,InterPro:IPR000477,UniProtKB/TrEMBL:Q7ARB2,NCBI_GP:CAB55257.1;Name=CAB55257.1;Note=YPMT1.75c%2C conserved hypothetical protein%2C len: 156 aa%3B similar to ORFs within group II introns e.g. the N-terminus of TR:Q46033 (EMBL:X98606) Clostridium difficile ORF (609 aa)%2C fasta scores%3B opt: 344 z-score: 429.5 E(): 1.3e-16%2C 41.9%25 identity in 148 aa overlap%2C some of which have been shown to have reverse-transcriptase and/or RNA maturase activities. Identical to ORF Y1068 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (156 aa) (99.4%25 identity in 156 aa overlap) / TR:O68783 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (151 aa) (100.0%25 identity in 151 aa overlap) which has a different putative start codon;gbkey=CDS;gene=YPMT1.75c;product=hypothetical protein YPMT1.75c;protein_id=CAB55257.1;transl_table=11
AL117211.1	EMBL	gene	76996	77304	.	+	.	ID=gene4264;Name=YPMT1.76;gbkey=Gene;gene=YPMT1.76;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	76996	77304	.	+	0	ID=cds4192;Parent=gene4264;Dbxref=GOA:Q7ARB1,UniProtKB/TrEMBL:Q7ARB1,NCBI_GP:CAB55258.1;Name=CAB55258.1;Note=YPMT1.76%2C conserved hypothetical protein%2C len: 102 aa%3B unknown function%2C similar to TR:P71290 (EMBL:U70214) Escherichia coli chromosomal hypothetical protein (102 aa)%2C fasta scores%3B opt: 586 z-score: 814.4 E(): 0%2C 85.3%25 identity in 102 aa overlap Identical to ORFY1067 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (102 aa) (100.0%25 identity in 102 aa overlap);gbkey=CDS;gene=YPMT1.76;product=hypothetical protein YPMT1.76;protein_id=CAB55258.1;transl_table=11
AL117211.1	EMBL	gene	77219	77590	.	+	.	ID=gene4265;Name=YPMT1.76A;gbkey=Gene;gene=YPMT1.76A;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	77219	77590	.	+	0	ID=cds4193;Parent=gene4265;Dbxref=GOA:Q9RIC2,UniProtKB/TrEMBL:Q9RIC2,NCBI_GP:CAB62376.1;Name=CAB62376.1;Note=YPMT1.76A%2C conserved hypothetical protein%2C len: 123 aa%3B unknown function%2C similar to TR:P71289 (EMBL:U70214) Escherichia coli chromosomal hypothetical protein (145 aa)%2C fasta scores%3B opt: 742 z-score: 992.9 E(): 0%2C 87.0%25 identity in 123 aa overlap. Identical to ORF Y1066 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (131 aa)%2C but with a different putative start codon%2C fasta scores%3B opt: 842 z-score: 1125.6 E(): 0%2C 100.0%25 identity in 123 aa overlap;gbkey=CDS;gene=YPMT1.76A;product=hypothetical protein YPMT1.76A;protein_id=CAB62376.1;transl_table=11
AL117211.1	EMBL	gene	77583	77666	.	-	.	ID=gene4266;Name=YPMT1.77c;gbkey=Gene;gene=YPMT1.77c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	77583	77666	.	-	0	ID=cds4194;Parent=gene4266;Dbxref=GOA:Q9RIC1,UniProtKB/TrEMBL:Q9RIC1,NCBI_GP:CAB55259.1;Name=CAB55259.1;Note=YPMT1.77c%2C possible transposase remnant%2C len: 28 aa%3B similar to many transposases e.g. YIS2_SHISO (EMBL:X05952) Shigella sonnei insertion element IS600 hypothetical 31 kD protein (272 aa);gbkey=CDS;gene=YPMT1.77c;partial=true;product=CAB55259.1;protein_id=CAB55259.1;transl_table=11
AL117211.1	EMBL	pseudogene	77764	78087	.	+	.	ID=gene4267;Name=YPMT1.78;gbkey=Gene;gene=YPMT1.78;gene_biotype=pseudogene;pseudo=true
AL117211.1	EMBL	CDS	77764	78087	.	+	0	ID=cds4195;Parent=gene4267;Dbxref=PSEUDO:CAB55260.1;Note=YPMT1.78%2C possible pseudogene%2C len: 324 bp%3B similar to part of YADD/YFAD/YHGA/YJIP family members e.g. YHGA_ECOLI (EMBL:U18997)%2C yhgA%2C Escherichia coli hypothetical protein (292 aa);gbkey=CDS;gene=YPMT1.78;product=putative pseudogene;pseudo=true;transl_table=11
AL117211.1	EMBL	gene	78286	79308	.	-	.	ID=gene4268;Name=YPMT1.79c;gbkey=Gene;gene=YPMT1.79c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	78286	79308	.	-	0	ID=cds4196;Parent=gene4268;Dbxref=GOA:Q9RIC0,InterPro:IPR002525,InterPro:IPR003346,InterPro:IPR003583,UniProtKB/TrEMBL:Q9RIC0,NCBI_GP:CAB55261.1;Name=CAB55261.1;Note=YPMT1.79c%2C probable transposase%2C len: 354 aa%3B similar to many e.g. TRA8_YEREN (EMBL:Z48244) Yersinia enterocolitica transposase for insertion sequence element IS1328 (334 aa)%2C fasta scores%3B opt: 778 z-score: 897.6 E(): 0%2C 36.3%25 identity in 333 aa overlap. Identical to ORF Y1063 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (354 aa) (100.0%25 identity in 340 aa overlap) which has a different putative start codon / TR:O68780 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (340 aa) (100.0%25 identity in 340 aa overlap). Contains probable helix-turn-helix motif at aa 240-261 (Score 1094%2C +2.91 SD);gbkey=CDS;gene=YPMT1.79c;product=putative transposase;protein_id=CAB55261.1;transl_table=11
AL117211.1	EMBL	ribosome_entry_site	79317	79321	.	-	.	ID=id10186;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL117211.1	EMBL	repeat_region	79734	81056	.	-	.	ID=id10187;Note=IS285 element;gbkey=repeat_region
AL117211.1	EMBL	gene	79777	80985	.	-	.	ID=gene4269;Name=YPMT1.80c;gbkey=Gene;gene=YPMT1.80c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	79777	80985	.	-	0	ID=cds4197;Parent=gene4269;Dbxref=GOA:O68779,InterPro:IPR001207,UniProtKB/TrEMBL:O68779,NCBI_GP:CAB55262.1;Name=CAB55262.1;Note=YPMT1.80c%2C probable transposase%2C len: 402 aa%3B similar to many e.g. TR:Q45111 (EMBL:U44828) Burkholderia cepacia IS402/IS1356 hybrid insertion sequence transposase (419 aa)%2C fasta scores%3B opt: 1293 z-score: 1512.0 E(): 0%2C 47.5%25 identity in 394 aa overlap. Identical to ORF Y1062 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (402 aa) (100.0%25 identity in 402 aa overlap) / TR:O68779 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (402 aa) (100.0%25 identity in 402 aa overlap). Contains Pfam match to entry PF00872 Transpo_mutator%2C Transposase%2C Mutator family%2C score 430.40%2C E-value 1.6e-125 and PS01007 Transposases%2C Mutator family%2C signature;gbkey=CDS;gene=YPMT1.80c;product=putative transposase;protein_id=CAB55262.1;transl_table=11
AL117211.1	EMBL	sequence_feature	79849	80985	.	-	.	ID=id10188;Note=Pfam match to entry PF00872 Transpo_mutator%2C Transposase%2C Mutator family%2C score 430.40%2C E-value 1.6e-125;gbkey=misc_feature;gene=YPMT1.80c
AL117211.1	EMBL	sequence_feature	80218	80292	.	-	.	ID=id10189;Note=PS01007 Transposases%2C Mutator family%2C signature;gbkey=misc_feature;gene=YPMT1.80c
AL117211.1	EMBL	sequence_feature	81056	96180	.	+	.	ID=id10190;Note=identical to Y.pestis KIM5 plasmid pMT1 (EMBL:AF053947) from 72482 to 57357%2C and to Y.pestis KIM5 plasmid pMT1 (EMBL:AF074611) from 76840 to 91965%2C except where noted;gbkey=misc_feature
AL117211.1	EMBL	gene	81334	82257	.	-	.	ID=gene4270;Name=YPMT1.81c;gbkey=Gene;gene=YPMT1.81c;gene_biotype=protein_coding;gene_synonym=caf1R
AL117211.1	EMBL	CDS	81334	82257	.	-	0	ID=cds4198;Parent=gene4270;Dbxref=GOA:P26950,InterPro:IPR009057,InterPro:IPR011256,InterPro:IPR018060,InterPro:IPR018062,InterPro:IPR020449,InterPro:IPR029442,NCBI_GP:CAB55263.1;Name=CAB55263.1;Note=YPMT1.81c%2C caf1R%2C probable F1 operon positive regulatory protein%2C len: 307 aa%3B highly similar to CAFR_YERPE (EMBL:X61996)%2C caf1r%2C F1 operon positive regulatory protein from Yersinia pestis plasmid pFRA (301 aa)%2C fasta scores%3B opt: 2016 z-score: 2508.4 E(): 0%2C 99.3%25 identity in 301 aa overlap. Identical to caf1R (EMBL:AF074611) from Y.pestis KIM5 pMT1 (307 aa) (99.7%25 identity in 307 aa overlap) / caf1R (EMBL:AF053947) from Y.pestis KIM5 pMT1 (301 aa) (100.0%25 identity in 301 aa overlap) which has a different putative start codon. Contains Pfam match to entry PF00165 HTH_2%2C Bacterial regulatory helix-turn-helix proteins%2C araC family%2C score 116.30%2C E-value 5.9e-31 and PS00041 Bacterial regulatory proteins%2C araC family signature;gbkey=CDS;gene=YPMT1.81c;product=putative F1 operon positive regulatory protein;protein_id=CAB55263.1;transl_table=11
AL117211.1	EMBL	sequence_feature	81916	82176	.	-	.	ID=id10191;Note=Pfam match to entry PF00165 HTH_2%2C Bacterial regulatory helix-turn-helix proteins%2C araC family%2C score 116.30%2C E-value 5.9e-31;gbkey=misc_feature;gene=YPMT1.81c
AL117211.1	EMBL	sequence_feature	81937	82074	.	-	.	ID=id10192;Note=PS00041 Bacterial regulatory proteins%2C araC family signature;gbkey=misc_feature;gene=YPMT1.81c
AL117211.1	EMBL	ribosome_entry_site	82553	82558	.	+	.	ID=id10193;Note=possible RBS;gbkey=regulatory;regulatory_class=ribosome_binding_site
AL117211.1	EMBL	gene	82567	83343	.	+	.	ID=gene4271;Name=YPMT1.82;gbkey=Gene;gene=YPMT1.82;gene_biotype=protein_coding;gene_synonym=caf1M
AL117211.1	EMBL	CDS	82567	83343	.	+	0	ID=cds4199;Parent=gene4271;Dbxref=GOA:P26926,InterPro:IPR001829,InterPro:IPR008962,InterPro:IPR016147,InterPro:IPR016148,InterPro:IPR018046,PDB:1P5U,PDB:1P5V,PDB:1Z9S,PDB:2OS7,PDB:3DOS,PDB:3DPB,PDB:3DSN,PDB:4AY0,PDB:4AYF,PDB:4AZ8,PDB:4B0M,NCBI_GP:CAB55264.1;Name=CAB55264.1;Note=YPMT1.82%2C caf1M%2C probable F1 chaperone protein%2C len: 258 aa%3B highly similar toCAFM_YERPE (EMBL:X61996) Yersinia pestis chaperone protein caf1M precursor from plasmid pFRA (258 aa)%2C fasta scores%3B opt: 1725 z-score: 2033.0 E(): 0%2C 99.6%25 identity in 258 aa overlap. Similar to MYFB_YEREN (EMBL:Z21953)%2C myfB%2C Yersinia enterocolitica chaperone required for fimbrial biogenesis (267 aa) (37.9%25 identity in 253 aa overlap) and PSAB_YERPE (EMBL:X97759)%2C psaB%2C Yersina pseudotuberculosis chaperone required for fimbrial biogenesis (273 aa) (41.4%25 identity in 261 aa overlap). Identical to caf1M (EMBL:AF074611) from Y.pestis KIM5 pMT1 (269 aa) (100.0%25 identity in 258 aa overlap) which has a different putative start codon / TR:O68774 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (258 aa) (100.0%25 identity in 258 aa overlap). Contains Pfam match to entry PF00345 pili_assembly%2C Gram-negative pili assembly chaperone%2C score 366.40%2C E-value 4.3e-107 and PS00635 Gram-negative pili assembly chaperone signature;gbkey=CDS;gene=YPMT1.82;product=putative F1 chaperone protein;protein_id=CAB55264.1;transl_table=11
AL117211.1	EMBL	sequence_feature	82690	83304	.	+	.	ID=id10194;Note=Pfam match to entry PF00345 pili_assembly%2C Gram-negative pili assembly chaperone%2C score 366.40%2C E-value 4.3e-107;gbkey=misc_feature;gene=YPMT1.82
AL117211.1	EMBL	sequence_feature	82894	82947	.	+	.	ID=id10195;Note=PS00635 Gram-negative pili assembly chaperone signature;gbkey=misc_feature;gene=YPMT1.82
AL117211.1	EMBL	gene	83368	85869	.	+	.	ID=gene4272;Name=YPMT1.83;gbkey=Gene;gene=YPMT1.83;gene_biotype=protein_coding;gene_synonym=caf1A
AL117211.1	EMBL	CDS	83368	85869	.	+	0	ID=cds4200;Parent=gene4272;Dbxref=GOA:P26949,InterPro:IPR000015,InterPro:IPR018030,InterPro:IPR025885,InterPro:IPR025949,PDB:2XET,PDB:3FCG,PDB:4B0E,PDB:4B0M,NCBI_GP:CAB55265.1;Name=CAB55265.1;Note=YPMT1.83%2C caf1A%2C probable F1 capsule anchoring protein%2C len: 833 aa%3B highly similar to CAFA_YERPE (EMBL:X61996) Yersinia pestis F1 capsule anchoring protein from plasmid pFRA (833 aa)%2C fasta scores%3B opt: 5556 z-score: 6311.1 E(): 0%2C 99.4%25 identity in 833 aa overlap. Similar to PSAC_YERPS (EMBL:L76301)%2C psaC%2C Yersina pseudotuberculosis outer membrane usher protein (823 aa) (40.1%25 identity in 826 aa overlap) and MYFC_YEREN (EMBL:Z21953)%2C myfC%2C Yersinia enterocolitica outer membrane usher protein (841 aa) (41.0%25 identity in 835 aa overlap). Identical to caf1A (EMBL:AF074611) from Y.pestis KIM5 pMT1 (833 aa) (100.0%25 identity in 833 aa overlap) / TR:O68773 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (833 aa) (100.0%25 identity in 833 aa overlap). Contains Pfam match to entry PF00577 Usher%2C Fimbrial Usher proteins%2C score 1369.40%2C E-value 0 and PS01151 Fimbrial biogenesis outer membrane usher protein signature;gbkey=CDS;gene=YPMT1.83;product=putative F1 capsule anchoring protein;protein_id=CAB55265.1;transl_table=11
AL117211.1	EMBL	sequence_feature	83437	85809	.	+	.	ID=id10196;Note=Pfam match to entry PF00577 Usher%2C Fimbrial Usher proteins%2C score 1369.40%2C E-value 0;gbkey=misc_feature;gene=YPMT1.83
AL117211.1	EMBL	sequence_feature	84247	84279	.	+	.	ID=id10197;Note=PS01151 Fimbrial biogenesis outer membrane usher protein signature;gbkey=misc_feature;gene=YPMT1.83
AL117211.1	EMBL	gene	85950	86462	.	+	.	ID=gene4273;Name=YPMT1.84;gbkey=Gene;gene=YPMT1.84;gene_biotype=protein_coding;gene_synonym=caf1
AL117211.1	EMBL	CDS	85950	86462	.	+	0	ID=cds4201;Parent=gene4273;Dbxref=GOA:P26948,InterPro:IPR008966,InterPro:IPR015335,PDB:1P5U,PDB:1P5V,PDB:1Z9S,PDB:3DOS,PDB:3DPB,PDB:3DSN,PDB:4AYF,PDB:4AZ8,PDB:4B0M,NCBI_GP:CAB55266.1;Name=CAB55266.1;Note=YPMT1.84%2C caf1%2C probable F1 capsule antigen%2C len: 170 aa%3B identical to CAF1_YERPE (EMBL:X61996) Yersinia pestis F1 capsule antigen from plasmid pFRA (170 aa)%2C fasta scores%3B opt: 1050 z-score: 1191.5 E(): 0%2C 100.0%25 identity in 170 aa overlap. Identical to caf1 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (170 aa) (100.0%25 identity in 170 aa overlap) / caf1 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (170 aa) (100.0%25 identity in 170 aa overlap);gbkey=CDS;gene=YPMT1.84;product=putative F1 capsule antigen;protein_id=CAB55266.1;transl_table=11
AL117211.1	EMBL	gene	87147	88325	.	+	.	ID=gene4274;Name=YPMT1.85;gbkey=Gene;gene=YPMT1.85;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	87147	88325	.	+	0	ID=cds4202;Parent=gene4274;Dbxref=GOA:Q7ARA9,InterPro:IPR002104,InterPro:IPR011010,InterPro:IPR013762,InterPro:IPR023109,UniProtKB/TrEMBL:Q7ARA9,NCBI_GP:CAB55267.1;Name=CAB55267.1;Note=YPMT1.85%2C possible integrase%2C len: 392 aa%3B weakly similar to INTA_ECOLI (EMBL:U03737)%2C intA%2C Escherichia coli prophage CP4-57 integrase (413 aa)%2C fasta scores%3B opt: 210 z-score: 255.3 E(): 6.4e-07%2C 22.1%25 identity in 263 aa overlap. Identical to ORF Y1101 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (392 aa) (99.7%25 identity in 392 aa overlap). Contains probable coiled-coil from 434 to 465 (32 residues) (Max score: 1.490%2C probability 0.94). Contains Pfam match to entry PF00589 Phage_integrase%2C 'Phage' integrase family%2C score 29.10%2C E-value 7.9e-07;gbkey=CDS;gene=YPMT1.85;product=putative integrase;protein_id=CAB55267.1;transl_table=11
AL117211.1	EMBL	sequence_feature	87648	88199	.	+	.	ID=id10198;Note=Pfam match to entry PF00589 Phage_integrase%2C 'Phage' integrase family%2C score 29.10%2C E-value 7.9e-07;gbkey=misc_feature;gene=YPMT1.85
AL117211.1	EMBL	gene	88320	88706	.	-	.	ID=gene4275;Name=YPMT1.86c;gbkey=Gene;gene=YPMT1.86c;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	88320	88706	.	-	0	ID=cds4203;Parent=gene4275;Dbxref=GOA:Q7ARA8,UniProtKB/TrEMBL:Q7ARA8,NCBI_GP:CAB55268.1;Name=CAB55268.1;Note=YPMT1.86c%2C hypothetical protein%2C len: 128 aa%3B unknown function%2C identical to ORF Y1102 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (128 aa)%2C fasta scores%3B opt: 801 z-score: 1004.7 E(): 0%2C 100.0%25 identity in 128 aa overlap;gbkey=CDS;gene=YPMT1.86c;product=hypothetical protein YPMT1.86c;protein_id=CAB55268.1;transl_table=11
AL117211.1	EMBL	gene	88969	89181	.	+	.	ID=gene4276;Name=YPMT1.86A;gbkey=Gene;gene=YPMT1.86A;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	88969	89181	.	+	0	ID=cds4204;Parent=gene4276;Dbxref=GOA:Q9RIB8,UniProtKB/TrEMBL:Q9RIB8,NCBI_GP:CAB62377.1;Name=CAB62377.1;Note=YPMT1.86A%2C hypothetical protein%2C len: 70 aa%3B unknown function;gbkey=CDS;gene=YPMT1.86A;product=hypothetical protein YPMT1.86A;protein_id=CAB62377.1;transl_table=11
AL117211.1	EMBL	gene	89291	91657	.	+	.	ID=gene4277;Name=YPMT1.87;gbkey=Gene;gene=YPMT1.87;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	89291	91657	.	+	0	ID=cds4205;Parent=gene4277;Dbxref=GOA:Q3V828,InterPro:IPR002035,InterPro:IPR006538,InterPro:IPR025861,UniProtKB/TrEMBL:Q3V828,NCBI_GP:CAB55269.1;Name=CAB55269.1;Note=YPMT1.87%2C possible porphyrin biosynthetic protein%2C len: 788 aa%3B weakly similar to COBT_PSEDE (EMBL:M62869)%2C cobT%2C Pseudomonas denitrificans cobalamin biosynthesis protein (631 aa)%2C fasta scores%3B opt: 279 z-score: 262.6 E(): 2.5e-07%2C 26.3%25 identity in 407 aa overlap. Identical to cobT (EMBL:AF074611) from Y.pestis KIM5 pMT1 (788 aa) (100.0%25 identity in 788 aa overlap) / TR:O68772 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (784 aa) (100.0%25 identity in 784 aa overlap) which has a different putative start codon;gbkey=CDS;gene=YPMT1.87;product=putative porphyrin biosynthetic protein;protein_id=CAB55269.1;transl_table=11
AL117211.1	EMBL	sequence_feature	91670	91671	.	+	.	ID=id10199;Note=difference: A is present in EMBL:AF053947 and in EMBL:AF074611;gbkey=misc_feature
AL117211.1	EMBL	gene	91754	92989	.	+	.	ID=gene4278;Name=YPMT1.88;gbkey=Gene;gene=YPMT1.88;gene_biotype=protein_coding
AL117211.1	EMBL	CDS	91754	92989	.	+	0	ID=cds4206;Parent=gene4278;Dbxref=GOA:O68771,InterPro:IPR011704,InterPro:IPR027417,UniProtKB/TrEMBL:O68771,NCBI_GP:CAB55270.1;Name=CAB55270.1;Note=YPMT1.88%2C possible porphyrin biosynthetic protein%2C len: 411 aa%3B weakly similar to COBS_PSEDE (EMBL:M62869)%2C cobS%2C Pseudomonas denitrificans cobalamin biosynthesis protein (332 aa)%2C fasta scores%3B opt: 384 z-score: 453.4 E(): 6e-18 28.6%25 identity in 308 aa overlap. Identical to cobS (EMBL:AF074611) from Y.pestis KIM5 pMT1 (411 aa) (100.0%25 identity in 411 aa overlap) / TR:O68771 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (411 aa) (100.0%25 identity in 411 aa overlap). Contains PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=CDS;gene=YPMT1.88;product=putative porphyrin biosynthetic protein;protein_id=CAB55270.1;transl_table=11
AL117211.1	EMBL	sequence_feature	92276	92299	.	+	.	ID=id10200;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=YPMT1.88
AL117211.1	EMBL	pseudogene	93170	96208	.	+	.	ID=gene4279;Name=YPMT1.89;gbkey=Gene;gene=YPMT1.89;gene_biotype=pseudogene;pseudo=true
AL117211.1	EMBL	CDS	93170	96208	.	+	0	ID=cds4207;Parent=gene4279;Note=YPMT1.89%2C probable DNA polymerase III pseudogene%2C len: 3039 bp%3B identical to the N-terminal region of putative DNA polymerase III%2C alpha subunit%2C ORF Y1106 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (1174 aa) / TR:O68770 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (1135 aa). YPMT1.56c is the C-terminus of the same gene;gbkey=CDS;gene=YPMT1.89;product=putative DNA polymerase III pseudogene;pseudo=true;transl_table=11
##sequence-region AL109969.1 1 9612
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=214092
AL109969.1	EMBL	region	1	9612	.	+	.	ID=id10201;Dbxref=taxon:214092;Is_circular=true;Name=pPCP1;gbkey=Src;genome=plasmid;mol_type=genomic DNA;note=biovar:Orientalis;plasmid-name=pPCP1;strain=CO-92
AL109969.1	EMBL	repeat_region	1	1954	.	+	.	ID=id10202;Note=IS100;gbkey=repeat_region
AL109969.1	EMBL	gene	87	1109	.	+	.	ID=gene4280;Name=YPPCP1.01;gbkey=Gene;gene=YPPCP1.01;gene_biotype=protein_coding
AL109969.1	EMBL	CDS	87	1109	.	+	0	ID=cds4208;Parent=gene4280;Dbxref=GOA:Q7ARN5,InterPro:IPR001584,InterPro:IPR009057,InterPro:IPR012337,InterPro:IPR017894,InterPro:IPR025246,UniProtKB/TrEMBL:Q7ARN5,NCBI_GP:CAB53164.1;Name=CAB53164.1;Note=YPPCP1.01%2C probable IS100 transposase%2C len: 340 aa%3B identical to TR:P74993%2C and simlar to e.g. TRA6_BACST putative transposase for insertion sequence element IS5376 (400 aa)%2C fasta scores%3B opt: 632 z-score: 1097.4 E(): 0%2C 38.1%25 identity in 328 aa overlap. Contains helix-turn-helix motif from aa 19-40 (Score 2045%2C +6.15 SD);gbkey=CDS;gene=YPPCP1.01;product=putative transposase;protein_id=CAB53164.1;transl_table=11
AL109969.1	EMBL	gene	1106	1888	.	+	.	ID=gene4281;Name=YPPCP1.02;gbkey=Gene;gene=YPPCP1.02;gene_biotype=protein_coding
AL109969.1	EMBL	CDS	1106	1888	.	+	0	ID=cds4209;Parent=gene4281;Dbxref=GOA:Q7ARK4,InterPro:IPR001270,InterPro:IPR002611,InterPro:IPR003593,InterPro:IPR027417,InterPro:IPR028350,UniProtKB/TrEMBL:Q7ARK4,NCBI_GP:CAB53165.1;Name=CAB53165.1;Note=YPPCP1.02%2C IS100 ATP-binding protein%2C len: 260 aa%3B identical to TR:P74994 and similar to e.g. ISTB_ECOLI insertion sequence IS21 putative ATP-binding protein (265 aa)%2C fasta scores%3B opt: 730 z-score: 1078.9 E(): 0%2C 47.4%25 identity in 249 aa overlap. Contains PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=CDS;gene=YPPCP1.02;product=putative ATP-binding protein;protein_id=CAB53165.1;transl_table=11
AL109969.1	EMBL	sequence_feature	1433	1456	.	+	.	ID=id10203;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=YPPCP1.02
AL109969.1	EMBL	repeat_region	2265	2283	.	+	.	ID=id10204;gbkey=repeat_region
AL109969.1	EMBL	repeat_region	2321	2340	.	+	.	ID=id10205;gbkey=repeat_region
AL109969.1	EMBL	repeat_region	2413	2432	.	-	.	ID=id10206;gbkey=repeat_region
AL109969.1	EMBL	sequence_feature	2924	4176	.	+	.	ID=id10207;Note=similar to ColE1 ori;gbkey=misc_feature
AL109969.1	EMBL	gene	2925	3119	.	+	.	ID=gene4282;Name=YPPCP1.03;gbkey=Gene;gene=YPPCP1.03;gene_biotype=protein_coding;gene_synonym=rop
AL109969.1	EMBL	CDS	2925	3119	.	+	0	ID=cds4210;Parent=gene4282;Dbxref=InterPro:IPR000769,UniProtKB/TrEMBL:Q9S1E1,NCBI_GP:CAB53166.1;Name=CAB53166.1;Note=YPPCP1.03%2C rop%2C plasmid replication regulatory protein%2C len: 64 aa%3B highly similar to e.g. ROP_ECOLI regulatory protein ROP (RNA one modulator) from ColE1 (63 aa)%2C fasta scores%3B opt: 241 z-score: 482.0 E(): 1.5e-19%2C 63.9%25 identity in 61 aa overlap.;gbkey=CDS;gene=YPPCP1.03;product=putative replication regulatory protein;protein_id=CAB53166.1;transl_table=11
AL109969.1	EMBL	gene	4355	4780	.	+	.	ID=gene4283;Name=YPPCP1.04;gbkey=Gene;gene=YPPCP1.04;gene_biotype=protein_coding;gene_synonym=pim
AL109969.1	EMBL	CDS	4355	4780	.	+	0	ID=cds4211;Parent=gene4283;Dbxref=UniProtKB/TrEMBL:Q57285,NCBI_GP:CAB53167.1;Name=CAB53167.1;Note=YPPCP1.04%2C pim%2C pesticin immunity protein%2C len: 141 aa%3B identical to TR:Q57285 (EMBL:Z54145%2C X92856);gbkey=CDS;gene=YPPCP1.04;product=pesticin immunity protein;protein_id=CAB53167.1;transl_table=11
AL109969.1	EMBL	gene	4815	5888	.	-	.	ID=gene4284;Name=YPPCP1.05c;gbkey=Gene;gene=YPPCP1.05c;gene_biotype=protein_coding;gene_synonym=pst
AL109969.1	EMBL	CDS	4815	5888	.	-	0	ID=cds4212;Parent=gene4284;Dbxref=GOA:Q57159,InterPro:IPR023346,InterPro:IPR023347,PDB:4AQN,PDB:4ARJ,PDB:4ARL,PDB:4ARM,PDB:4ARP,PDB:4ARQ,PDB:4EPF,PDB:4EPI,PDB:4EXM,UniProtKB/TrEMBL:Q57159,NCBI_GP:CAB53168.1;Name=CAB53168.1;Note=YPPCP1.05c%2C pst%2C pesticin%2C len: 357 aa%3B identical to TR:Q57159 (EMBL:X92856);gbkey=CDS;gene=YPPCP1.05c;product=pesticin;protein_id=CAB53168.1;transl_table=11
AL109969.1	EMBL	sequence_feature	5910	5917	.	+	.	ID=id10208;Note=difference: AF053945 has 7 A's this sequence has 8;gbkey=misc_feature
AL109969.1	EMBL	sequence_feature	5927	5934	.	+	.	ID=id10209;Note=difference: AF053945 has 9 A's this sequence has 8;gbkey=misc_feature
AL109969.1	EMBL	gene	6006	6422	.	+	.	ID=gene4285;Name=YPPCP1.06;gbkey=Gene;gene=YPPCP1.06;gene_biotype=protein_coding
AL109969.1	EMBL	CDS	6006	6422	.	+	0	ID=cds4213;Parent=gene4285;Dbxref=UniProtKB/TrEMBL:Q9S1E0,NCBI_GP:CAB53169.1;Name=CAB53169.1;Note=YPPCP1.06%2C unknown%2C len: 138 aa;gbkey=CDS;gene=YPPCP1.06;product=hypothetical protein;protein_id=CAB53169.1;transl_table=11
AL109969.1	EMBL	gene	6665	7603	.	+	.	ID=gene4286;Name=YPPCP1.07;gbkey=Gene;gene=YPPCP1.07;gene_biotype=protein_coding;gene_synonym=pla
AL109969.1	EMBL	CDS	6665	7603	.	+	0	ID=cds4214;Parent=gene4286;Dbxref=GOA:P17811,InterPro:IPR000036,InterPro:IPR020079,InterPro:IPR020080,InterPro:IPR023619,PDB:2X4M,PDB:2X55,PDB:2X56,PDB:4DCB,NCBI_GP:CAB53170.1;Name=CAB53170.1;Note=YPPCP1.07%2C pla%2C coagulase/fibrinolysin precursor (EC 3.4.21.-) (plasminogen activator)%2C len: 312 aa%3B identical to COLY_YERPE. Contains PS00834 and PS00835 Serine proteases%2C omptin family signatures 1 and 2;gbkey=CDS;gene=YPPCP1.07;product=coagulase/fibrinolysin precursor;protein_id=CAB53170.1;transl_table=11
AL109969.1	EMBL	sequence_feature	7007	7036	.	+	.	ID=id10210;Note=PS00834 Serine proteases%2C omptin family signature 1;gbkey=misc_feature;gene=YPPCP1.07
AL109969.1	EMBL	sequence_feature	7118	7168	.	+	.	ID=id10211;Note=PS00835 Serine proteases%2C omptin family signature 2;gbkey=misc_feature;gene=YPPCP1.07
AL109969.1	EMBL	gene	7790	8089	.	-	.	ID=gene4287;Name=YPPCP1.08c;gbkey=Gene;gene=YPPCP1.08c;gene_biotype=protein_coding
AL109969.1	EMBL	CDS	7790	8089	.	-	0	ID=cds4215;Parent=gene4287;Dbxref=GOA:Q9S1D9,InterPro:IPR001387,InterPro:IPR010982,UniProtKB/TrEMBL:Q9S1D9,NCBI_GP:CAB53171.1;Name=CAB53171.1;Note=YPPCP1.08c%2C probable transcriptional regulator%2C len: 99 aa%3B similar to several predicted transcriptional regulators e.g. TR:P95258 (EMBL:Z84498) Mycobacterium tuberculosis MTCY09F9.0 8C (Rv1956) (149 aa)%2C fasta scores%3B opt: 190 z-score: 314.7 E(): 3.1e-10%2C 35.4%25 identity in 99 aa overlap. Contains helix-turn-helix motif from aa 42-63 (Score 2083%2C +6.28 SD);gbkey=CDS;gene=YPPCP1.08c;product=putative transcriptional regulator;protein_id=CAB53171.1;transl_table=11
AL109969.1	EMBL	gene	8089	8436	.	-	.	ID=gene4288;Name=YPPCP1.09c;gbkey=Gene;gene=YPPCP1.09c;gene_biotype=protein_coding
AL109969.1	EMBL	CDS	8089	8436	.	-	0	ID=cds4216;Parent=gene4288;Dbxref=InterPro:IPR009241,UniProtKB/TrEMBL:Q9S1D8,NCBI_GP:CAB53172.1;Name=CAB53172.1;Note=YPPCP1.09c%2C unknown%2C len: 115 aa%3B similar to two hypothetical proteins from M. tuberculosis TR:O53468 (EMBL:O53468) MTV018.09C (Rv2022c) (201 aa)%2C fasta scores%3B opt: 271 z-score: 398.5 E(): 6.7e-15%2C 41.7%25 identity in 108 aa overlap%2C and TR:O53332 (EMBL:AL021646) MTV014.26 (Rv3182) (114 aa)%2C fasta scores%3B opt: 214 z-score: 320.5 E(): 1.5e-10%2C 39.4%25 identity in 104 aa overlap;gbkey=CDS;gene=YPPCP1.09c;product=hypothetical protein;protein_id=CAB53172.1;transl_table=11
AL109969.1	EMBL	sequence_feature	8528	8532	.	+	.	ID=id10212;Note=difference: AF053945 has 3 T's this sequence has 5;gbkey=misc_feature
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