locus-tag class description YPD4_0001 PF00258 Flavodoxin YPD4_0002 PF01037 Lrp/AsnC ligand binding domain YPD4_0003 PF03590 Aspartate-ammonia ligase YPD4_0004 PF05762 VWA domain containing CoxE-like protein YPD4_0005 PF07728 AAA domain (dynein-related subfamily) YPD4_0005 PF17868 AAA lid domain YPD4_0005 PF12592 Protein of unknown function (DUF3763) YPD4_0006 PF02705 K+ potassium transporter YPD4_0007 PF05025 RbsD / FucU transport protein family YPD4_0008 PF00294 pfkB family carbohydrate kinase YPD4_0009 PF07690 Major Facilitator Superfamily YPD4_0010 PF07729 FCD domain YPD4_0010 PF00392 Bacterial regulatory proteins, gntR family YPD4_0011 PF00872 Transposase, Mutator family YPD4_0012 PF03205 Molybdopterin guanine dinucleotide synthesis protein B YPD4_0013 PF12804 MobA-like NTP transferase domain YPD4_0014 PF01636 Phosphotransferase enzyme family YPD4_0015 PF01323 DSBA-like thioredoxin domain YPD4_0016 PF01367 5'-3' exonuclease, C-terminal SAM fold YPD4_0016 PF01612 3'-5' exonuclease YPD4_0016 PF00476 DNA polymerase family A YPD4_0016 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPD4_0017 PF01797 Transposase IS200 like YPD4_0018 PF01926 50S ribosome-binding GTPase YPD4_0019 PF04220 Der GTPase activator (YihI) YPD4_0020 PF06969 HemN C-terminal domain YPD4_0020 PF04055 Radical SAM superfamily YPD4_0021 PF02954 Bacterial regulatory protein, Fis family YPD4_0021 PF00072 Response regulator receiver domain YPD4_0021 PF00158 Sigma-54 interaction domain YPD4_0022 PF00989 PAS fold YPD4_0022 PF00512 His Kinase A (phospho-acceptor) domain YPD4_0022 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_0023 PF00120 Glutamine synthetase, catalytic domain YPD4_0023 PF03951 Glutamine synthetase, beta-Grasp domain YPD4_0025 PF13419 Haloacid dehalogenase-like hydrolase YPD4_0026 PF03631 Virulence factor BrkB YPD4_0027 PF02580 D-Tyr-tRNA(Tyr) deacylase YPD4_0028 PF01695 IstB-like ATP binding protein YPD4_0029 PF02796 Helix-turn-helix domain of resolvase YPD4_0029 PF00665 Integrase core domain YPD4_0030 PF00583 Acetyltransferase (GNAT) family YPD4_0030 PF09500 Putative thioesterase (yiiD_Cterm) YPD4_0031 PF05170 AsmA family YPD4_0032 PF00860 Permease family YPD4_0033 PF00860 Permease family YPD4_0034 PF03616 Sodium/glutamate symporter YPD4_0035 PF17191 RecG wedge domain YPD4_0035 PF00271 Helicase conserved C-terminal domain YPD4_0035 PF00270 DEAD/DEAH box helicase YPD4_0036 PF12105 SpoU, rRNA methylase, C-terminal YPD4_0036 PF00588 SpoU rRNA Methylase family YPD4_0037 PF02824 TGS domain YPD4_0037 PF04607 Region found in RelA / SpoT proteins YPD4_0037 PF13291 ACT domain YPD4_0038 PF00625 Guanylate kinase YPD4_0039 PF01653 NAD-dependent DNA ligase adenylation domain YPD4_0039 PF03120 NAD-dependent DNA ligase OB-fold domain YPD4_0040 PF03458 UPF0126 domain YPD4_0041 PF08340 Domain of unknown function (DUF1732) YPD4_0041 PF03755 YicC-like family, N-terminal region YPD4_0042 PF01138 3' exoribonuclease family, domain 1 YPD4_0042 PF03725 3' exoribonuclease family, domain 2 YPD4_0043 PF00156 Phosphoribosyl transferase domain YPD4_0044 PF00440 Bacterial regulatory proteins, tetR family YPD4_0045 PF00692 dUTPase YPD4_0046 PF04127 DNA / pantothenate metabolism flavoprotein YPD4_0046 PF02441 Flavoprotein YPD4_0047 PF04002 RadC-like JAB domain YPD4_0048 PF06827 Zinc finger found in FPG and IleRS YPD4_0048 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain YPD4_0048 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain YPD4_0049 PF01467 Cytidylyltransferase-like YPD4_0050 PF00535 Glycosyl transferase family 2 YPD4_0051 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YPD4_0052 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPD4_0053 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPD4_0054 PF01370 NAD dependent epimerase/dehydratase family YPD4_0055 PF00155 Aminotransferase class I and II YPD4_0056 PF00107 Zinc-binding dehydrogenase YPD4_0056 PF08240 Alcohol dehydrogenase GroES-like domain YPD4_0057 PF04748 Divergent polysaccharide deacetylase YPD4_0058 PF04748 Divergent polysaccharide deacetylase YPD4_0059 PF01551 Peptidase family M23 YPD4_0060 PF01676 Metalloenzyme superfamily YPD4_0060 PF06415 BPG-independent PGAM N-terminus (iPGM_N) YPD4_0061 PF00581 Rhodanese-like domain YPD4_0062 PF02556 Preprotein translocase subunit SecB YPD4_0063 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus YPD4_0063 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YPD4_0064 PF06426 Serine acetyltransferase, N-terminal YPD4_0064 PF00132 Bacterial transferase hexapeptide (six repeats) YPD4_0065 PF00588 SpoU rRNA Methylase family YPD4_0066 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPD4_0066 PF12833 Helix-turn-helix domain YPD4_0066 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPD4_0066 PF02805 Metal binding domain of Ada YPD4_0067 PF00512 His Kinase A (phospho-acceptor) domain YPD4_0067 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_0067 PF00672 HAMP domain YPD4_0067 PF16527 Two-component sensor protein CpxA, periplasmic domain YPD4_0068 PF00486 Transcriptional regulatory protein, C terminal YPD4_0068 PF00072 Response regulator receiver domain YPD4_0069 PF07813 LTXXQ motif family protein YPD4_0070 PF04754 Putative transposase, YhgA-like YPD4_0071 PF16916 Dimerisation domain of Zinc Transporter YPD4_0071 PF01545 Cation efflux family YPD4_0072 PF00365 Phosphofructokinase YPD4_0075 PF00939 Sodium:sulfate symporter transmembrane region YPD4_0076 PF03737 Aldolase/RraA YPD4_0077 PF02585 GlcNAc-PI de-N-acetylase YPD4_0078 PF03466 LysR substrate binding domain YPD4_0078 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_0079 PF00121 Triosephosphate isomerase YPD4_0080 PF07305 Protein of unknown function (DUF1454) YPD4_0081 PF05656 Protein of unknown function (DUF805) YPD4_0082 PF00175 Oxidoreductase NAD-binding domain YPD4_0082 PF00970 Oxidoreductase FAD-binding domain YPD4_0083 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded YPD4_0084 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPD4_0084 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD4_0085 PF00230 Major intrinsic protein YPD4_0087 PF00005 ABC transporter YPD4_0087 PF00664 ABC transporter transmembrane region YPD4_0087 PF03412 Peptidase C39 family YPD4_0088 PF00529 HlyD membrane-fusion protein of T1SS YPD4_0088 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD4_0090 PF03737 Aldolase/RraA YPD4_0091 PF01040 UbiA prenyltransferase family YPD4_0092 PF10431 C-terminal, D2-small domain, of ClpB protein YPD4_0092 PF07724 AAA domain (Cdc48 subfamily) YPD4_0092 PF00004 ATPase family associated with various cellular activities (AAA) YPD4_0093 PF00227 Proteasome subunit YPD4_0094 PF05036 Sporulation related domain YPD4_0095 PF00356 Bacterial regulatory proteins, lacI family YPD4_0096 PF18074 Primosomal protein N C-terminal domain YPD4_0096 PF18319 PriA DNA helicase Cys-rich region (CRR) domain YPD4_0096 PF17764 3′ DNA-binding domain (3′BD) YPD4_0096 PF00271 Helicase conserved C-terminal domain YPD4_0096 PF00270 DEAD/DEAH box helicase YPD4_0097 PF05360 yiaA/B two helix domain YPD4_0098 PF01340 Met Apo-repressor, MetJ YPD4_0099 PF01053 Cys/Met metabolism PLP-dependent enzyme YPD4_0100 PF00742 Homoserine dehydrogenase YPD4_0100 PF03447 Homoserine dehydrogenase, NAD binding domain YPD4_0100 PF00696 Amino acid kinase family YPD4_0101 PF02219 Methylenetetrahydrofolate reductase YPD4_0102 PF13276 HTH-like domain YPD4_0102 PF13333 Integrase core domain YPD4_0102 PF00665 Integrase core domain YPD4_0104 PF08220 DeoR-like helix-turn-helix domain YPD4_0104 PF00455 DeoR C terminal sensor domain YPD4_0105 PF01694 Rhomboid family YPD4_0105 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease YPD4_0106 PF00581 Rhodanese-like domain YPD4_0107 PF17874 MalT-like TPR region YPD4_0107 PF00196 Bacterial regulatory proteins, luxR family YPD4_0108 PF00343 Carbohydrate phosphorylase YPD4_0109 PF00343 Carbohydrate phosphorylase YPD4_0110 PF02446 4-alpha-glucanotransferase YPD4_0111 PF01106 NifU-like domain YPD4_0111 PF01521 Iron-sulphur cluster biosynthesis YPD4_0112 PF00156 Phosphoribosyl transferase domain YPD4_0113 PF00561 alpha/beta hydrolase fold YPD4_0114 PF17910 FeoB cytosolic helical domain YPD4_0114 PF07664 Ferrous iron transport protein B C terminus YPD4_0114 PF02421 Ferrous iron transport protein B YPD4_0114 PF07670 Nucleoside recognition YPD4_0115 PF00575 S1 RNA binding domain YPD4_0115 PF09371 Tex-like protein N-terminal domain YPD4_0115 PF16921 Tex protein YqgF-like domain YPD4_0115 PF17674 HHH domain YPD4_0116 PF03449 Transcription elongation factor, N-terminal YPD4_0116 PF01272 Transcription elongation factor, GreA/GreB, C-term YPD4_0117 PF00072 Response regulator receiver domain YPD4_0117 PF00486 Transcriptional regulatory protein, C terminal YPD4_0118 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_0118 PF00672 HAMP domain YPD4_0118 PF00512 His Kinase A (phospho-acceptor) domain YPD4_0119 PF01293 Phosphoenolpyruvate carboxykinase YPD4_0120 PF01430 Hsp33 protein YPD4_0121 PF01479 S4 domain YPD4_0122 PF13419 Haloacid dehalogenase-like hydrolase YPD4_0123 PF07095 Intracellular growth attenuator protein IgaA YPD4_0124 PF00293 NUDIX domain YPD4_0125 PF17092 Penicillin-binding protein OB-like domain YPD4_0125 PF00912 Transglycosylase YPD4_0125 PF00905 Penicillin binding protein transpeptidase domain YPD4_0130 PF00263 Bacterial type II and III secretion system protein YPD4_0130 PF03958 Bacterial type II/III secretion system short domain YPD4_0131 PF03958 Bacterial type II/III secretion system short domain YPD4_0131 PF00263 Bacterial type II and III secretion system protein YPD4_0132 PF01202 Shikimate kinase YPD4_0133 PF01761 3-dehydroquinate synthase YPD4_0134 PF05036 Sporulation related domain YPD4_0135 PF02086 D12 class N6 adenine-specific DNA methyltransferase YPD4_0136 PF00834 Ribulose-phosphate 3 epimerase family YPD4_0137 PF13419 Haloacid dehalogenase-like hydrolase YPD4_0138 PF00579 tRNA synthetases class I (W and Y) YPD4_0139 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPD4_0139 PF10414 Sirohaem synthase dimerisation region YPD4_0139 PF14824 Sirohaem biosynthesis protein central YPD4_0140 PF01226 Formate/nitrite transporter YPD4_0141 PF13806 Rieske-like [2Fe-2S] domain YPD4_0142 PF04324 BFD-like [2Fe-2S] binding domain YPD4_0142 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD4_0142 PF18267 Rubredoxin NAD+ reductase C-terminal domain YPD4_0142 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPD4_0142 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPD4_0143 PF07969 Amidohydrolase family YPD4_0144 PF07690 Major Facilitator Superfamily YPD4_0146 PF00356 Bacterial regulatory proteins, lacI family YPD4_0147 PF02056 Family 4 glycosyl hydrolase YPD4_0147 PF11975 Family 4 glycosyl hydrolase C-terminal domain YPD4_0148 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPD4_0149 PF05872 Bacterial protein of unknown function (DUF853) YPD4_0150 PF00117 Glutamine amidotransferase class-I YPD4_0151 PF00202 Aminotransferase class-III YPD4_0152 PF12805 FUSC-like inner membrane protein yccS YPD4_0153 PF13545 Crp-like helix-turn-helix domain YPD4_0153 PF00027 Cyclic nucleotide-binding domain YPD4_0154 PF02566 OsmC-like protein YPD4_0156 PF00485 Phosphoribulokinase / Uridine kinase family YPD4_0157 PF00561 alpha/beta hydrolase fold YPD4_0158 PF01810 LysE type translocator YPD4_0159 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPD4_0160 PF00005 ABC transporter YPD4_0161 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_0162 PF02668 Taurine catabolism dioxygenase TauD, TfdA family YPD4_0164 PF00535 Glycosyl transferase family 2 YPD4_0165 PF00005 ABC transporter YPD4_0165 PF12848 ABC transporter YPD4_0166 PF12848 ABC transporter YPD4_0166 PF00005 ABC transporter YPD4_0167 PF02525 Flavodoxin-like fold YPD4_0168 PF02254 TrkA-N domain YPD4_0168 PF00999 Sodium/hydrogen exchanger family YPD4_0169 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPD4_0170 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPD4_0170 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPD4_0171 PF08348 YheO-like PAS domain YPD4_0171 PF13309 HTH domain YPD4_0172 PF02635 DsrE/DsrF-like family YPD4_0173 PF02635 DsrE/DsrF-like family YPD4_0174 PF00164 Ribosomal protein S12/S23 YPD4_0175 PF00177 Ribosomal protein S7p/S5e YPD4_0176 PF00009 Elongation factor Tu GTP binding domain YPD4_0176 PF00679 Elongation factor G C-terminus YPD4_0176 PF03764 Elongation factor G, domain IV YPD4_0176 PF03144 Elongation factor Tu domain 2 YPD4_0176 PF14492 Elongation Factor G, domain II YPD4_0177 PF03144 Elongation factor Tu domain 2 YPD4_0177 PF03143 Elongation factor Tu C-terminal domain YPD4_0177 PF00009 Elongation factor Tu GTP binding domain YPD4_0178 PF01797 Transposase IS200 like YPD4_0179 PF00210 Ferritin-like domain YPD4_0180 PF00338 Ribosomal protein S10p/S20e YPD4_0181 PF00297 Ribosomal protein L3 YPD4_0182 PF00573 Ribosomal protein L4/L1 family YPD4_0183 PF00276 Ribosomal protein L23 YPD4_0184 PF03947 Ribosomal Proteins L2, C-terminal domain YPD4_0184 PF00181 Ribosomal Proteins L2, RNA binding domain YPD4_0185 PF00237 Ribosomal protein L22p/L17e YPD4_0186 PF00189 Ribosomal protein S3, C-terminal domain YPD4_0186 PF07650 KH domain YPD4_0187 PF00252 Ribosomal protein L16p/L10e YPD4_0188 PF00238 Ribosomal protein L14p/L23e YPD4_0189 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 YPD4_0189 PF00467 KOW motif YPD4_0190 PF00673 ribosomal L5P family C-terminus YPD4_0190 PF00281 Ribosomal protein L5 YPD4_0191 PF00253 Ribosomal protein S14p/S29e YPD4_0192 PF00410 Ribosomal protein S8 YPD4_0193 PF00347 Ribosomal protein L6 YPD4_0194 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast YPD4_0195 PF03719 Ribosomal protein S5, C-terminal domain YPD4_0195 PF00333 Ribosomal protein S5, N-terminal domain YPD4_0196 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A YPD4_0197 PF00344 SecY translocase YPD4_0198 PF00416 Ribosomal protein S13/S18 YPD4_0199 PF00411 Ribosomal protein S11 YPD4_0200 PF01479 S4 domain YPD4_0200 PF00163 Ribosomal protein S4/S9 N-terminal domain YPD4_0201 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain YPD4_0201 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain YPD4_0201 PF01000 RNA polymerase Rpb3/RpoA insert domain YPD4_0202 PF01196 Ribosomal protein L17 YPD4_0203 PF13411 MerR HTH family regulatory protein YPD4_0204 PF01741 Large-conductance mechanosensitive channel, MscL YPD4_0205 PF02080 TrkA-C domain YPD4_0205 PF02254 TrkA-N domain YPD4_0206 PF01029 NusB family YPD4_0206 PF01189 16S rRNA methyltransferase RsmB/F YPD4_0207 PF02911 Formyl transferase, C-terminal domain YPD4_0207 PF00551 Formyl transferase YPD4_0208 PF01327 Polypeptide deformylase YPD4_0209 PF02481 DNA recombination-mediator protein A YPD4_0209 PF17782 DprA winged helix domain YPD4_0210 PF04361 Protein of unknown function (DUF494) YPD4_0211 PF01396 Topoisomerase DNA binding C4 zinc finger YPD4_0212 PF01300 Telomere recombination YPD4_0213 PF01488 Shikimate / quinate 5-dehydrogenase YPD4_0213 PF18317 Shikimate 5'-dehydrogenase C-terminal domain YPD4_0213 PF08501 Shikimate dehydrogenase substrate binding domain YPD4_0214 PF00132 Bacterial transferase hexapeptide (six repeats) YPD4_0215 PF01695 IstB-like ATP binding protein YPD4_0216 PF02796 Helix-turn-helix domain of resolvase YPD4_0216 PF00665 Integrase core domain YPD4_0218 PF00474 Sodium:solute symporter family YPD4_0219 PF04341 Protein of unknown function, DUF485 YPD4_0220 PF00501 AMP-binding enzyme YPD4_0220 PF16177 Acetyl-coenzyme A synthetase N-terminus YPD4_0220 PF13193 AMP-binding enzyme C-terminal domain YPD4_0221 PF00375 Sodium:dicarboxylate symporter family YPD4_0222 PF00072 Response regulator receiver domain YPD4_0222 PF00196 Bacterial regulatory proteins, luxR family YPD4_0223 PF00072 Response regulator receiver domain YPD4_0223 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_0223 PF00512 His Kinase A (phospho-acceptor) domain YPD4_0223 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPD4_0223 PF01627 Hpt domain YPD4_0223 PF00672 HAMP domain YPD4_0226 PF14525 AraC-binding-like domain YPD4_0226 PF12833 Helix-turn-helix domain YPD4_0227 PF01514 Secretory protein of YscJ/FliF family YPD4_0230 PF00771 FHIPEP family YPD4_0231 PF18269 T3SS EscN ATPase C-terminal domain YPD4_0231 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPD4_0234 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPD4_0235 PF00813 FliP family YPD4_0236 PF01311 Bacterial export proteins, family 1 YPD4_0237 PF01312 FlhB HrpN YscU SpaS Family YPD4_0238 PF01312 FlhB HrpN YscU SpaS Family YPD4_0239 PF04143 Sulphur transport YPD4_0240 PF03466 LysR substrate binding domain YPD4_0240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_0241 PF03222 Tryptophan/tyrosine permease family YPD4_0242 PF01053 Cys/Met metabolism PLP-dependent enzyme YPD4_0243 PF00005 ABC transporter YPD4_0244 PF01032 FecCD transport family YPD4_0245 PF01497 Periplasmic binding protein YPD4_0246 PF05171 Haemin-degrading HemS.ChuX domain YPD4_0247 PF07715 TonB-dependent Receptor Plug Domain YPD4_0247 PF00593 TonB dependent receptor YPD4_0248 PF07715 TonB-dependent Receptor Plug Domain YPD4_0248 PF00593 TonB dependent receptor YPD4_0249 PF13460 NAD(P)H-binding YPD4_0250 PF06228 Haem utilisation ChuX/HutX YPD4_0251 PF04055 Radical SAM superfamily YPD4_0255 PF15608 PELOTA RNA binding domain YPD4_0255 PF11202 Phosphoribosyl transferase (PRTase) YPD4_0259 PF02342 TerD domain YPD4_0260 PF02342 TerD domain YPD4_0261 PF02342 TerD domain YPD4_0262 PF05099 Tellurite resistance protein TerB YPD4_0263 PF03741 Integral membrane protein TerC family YPD4_0264 PF02342 TerD domain YPD4_0265 PF02342 TerD domain YPD4_0267 PF00577 Outer membrane usher protein YPD4_0267 PF13954 PapC N-terminal domain YPD4_0267 PF13953 PapC C-terminal domain YPD4_0268 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD4_0270 PF01565 FAD binding domain YPD4_0270 PF08031 Berberine and berberine like YPD4_0271 PF12951 Passenger-associated-transport-repeat YPD4_0272 PF04345 Chorismate lyase YPD4_0273 PF01040 UbiA prenyltransferase family YPD4_0274 PF01553 Acyltransferase YPD4_0275 PF01219 Prokaryotic diacylglycerol kinase YPD4_0276 PF00717 Peptidase S24-like YPD4_0276 PF01726 LexA DNA binding domain YPD4_0277 PF01475 Ferric uptake regulator family YPD4_0278 PF01207 Dihydrouridine synthase (Dus) YPD4_0279 PF00107 Zinc-binding dehydrogenase YPD4_0279 PF08240 Alcohol dehydrogenase GroES-like domain YPD4_0280 PF03796 DnaB-like helicase C terminal domain YPD4_0280 PF00772 DnaB-like helicase N terminal domain YPD4_0281 PF00842 Alanine racemase, C-terminal domain YPD4_0281 PF01168 Alanine racemase, N-terminal domain YPD4_0282 PF00155 Aminotransferase class I and II YPD4_0283 PF04237 YjbR YPD4_0284 PF00005 ABC transporter YPD4_0284 PF17755 UvrA DNA-binding domain YPD4_0284 PF17760 UvrA interaction domain YPD4_0285 PF00436 Single-strand binding protein family YPD4_0286 PF05336 L-rhamnose mutarotase YPD4_0287 PF00465 Iron-containing alcohol dehydrogenase YPD4_0288 PF00596 Class II Aldolase and Adducin N-terminal domain YPD4_0289 PF06134 L-rhamnose isomerase (RhaA) YPD4_0290 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD4_0290 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPD4_0291 PF02311 AraC-like ligand binding domain YPD4_0291 PF12833 Helix-turn-helix domain YPD4_0292 PF12833 Helix-turn-helix domain YPD4_0292 PF02311 AraC-like ligand binding domain YPD4_0293 PF06379 L-rhamnose-proton symport protein (RhaT) YPD4_0297 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPD4_0297 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD4_0297 PF13247 4Fe-4S dicluster domain YPD4_0298 PF13247 4Fe-4S dicluster domain YPD4_0298 PF12800 4Fe-4S binding domain YPD4_0299 PF01568 Molydopterin dinucleotide binding domain YPD4_0299 PF00384 Molybdopterin oxidoreductase YPD4_0299 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPD4_0300 PF02683 Cytochrome C biogenesis protein transmembrane region YPD4_0300 PF11412 Disulphide bond corrector protein DsbC YPD4_0301 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPD4_0302 PF10415 Fumarase C C-terminus YPD4_0302 PF00206 Lyase YPD4_0303 PF04186 FxsA cytoplasmic membrane protein YPD4_0304 PF00118 TCP-1/cpn60 chaperonin family YPD4_0305 PF13698 Domain of unknown function (DUF4156) YPD4_0306 PF04055 Radical SAM superfamily YPD4_0307 PF09285 Elongation factor P, C-terminal YPD4_0307 PF08207 Elongation factor P (EF-P) KOW-like domain YPD4_0307 PF01132 Elongation factor P (EF-P) OB domain YPD4_0308 PF00893 Small Multidrug Resistance protein YPD4_0309 PF02313 Fumarate reductase subunit D YPD4_0310 PF02300 Fumarate reductase subunit C YPD4_0311 PF13183 4Fe-4S dicluster domain YPD4_0311 PF13085 2Fe-2S iron-sulfur cluster binding domain YPD4_0312 PF02910 Fumarate reductase flavoprotein C-term YPD4_0312 PF00890 FAD binding domain YPD4_0313 PF00152 tRNA synthetases class II (D, K and N) YPD4_0314 PF00924 Mechanosensitive ion channel YPD4_0314 PF12795 Mechanosensitive ion channel porin domain YPD4_0314 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPD4_0315 PF02666 Phosphatidylserine decarboxylase YPD4_0316 PF03193 RsgA GTPase YPD4_0317 PF00929 Exonuclease YPD4_0318 PF08331 Domain of unknown function (DUF1730) YPD4_0319 PF03853 YjeF-related protein N-terminus YPD4_0319 PF01256 Carbohydrate kinase YPD4_0320 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE YPD4_0321 PF01520 N-acetylmuramoyl-L-alanine amidase YPD4_0322 PF01119 DNA mismatch repair protein, C-terminal domain YPD4_0322 PF08676 MutL C terminal dimerisation domain YPD4_0324 PF17209 Hfq protein YPD4_0325 PF13167 GTP-binding GTPase N-terminal YPD4_0325 PF01926 50S ribosome-binding GTPase YPD4_0325 PF16360 GTP-binding GTPase Middle Region YPD4_0326 PF01145 SPFH domain / Band 7 family YPD4_0326 PF12221 Bacterial membrane protein N terminal YPD4_0327 PF01145 SPFH domain / Band 7 family YPD4_0328 PF00709 Adenylosuccinate synthetase YPD4_0329 PF02082 Transcriptional regulator YPD4_0330 PF00773 RNB domain YPD4_0330 PF17876 Cold shock domain YPD4_0330 PF08206 Ribonuclease B OB domain YPD4_0330 PF00575 S1 RNA binding domain YPD4_0330 PF08461 Ribonuclease R winged-helix domain YPD4_0331 PF17876 Cold shock domain YPD4_0331 PF00773 RNB domain YPD4_0331 PF00575 S1 RNA binding domain YPD4_0331 PF08461 Ribonuclease R winged-helix domain YPD4_0331 PF08206 Ribonuclease B OB domain YPD4_0332 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPD4_0332 PF00588 SpoU rRNA Methylase family YPD4_0333 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPD4_0333 PF02770 Acyl-CoA dehydrogenase, middle domain YPD4_0333 PF18158 Adaptive response protein AidB N-terminal domain YPD4_0334 PF07338 Protein of unknown function (DUF1471) YPD4_0335 PF01695 IstB-like ATP binding protein YPD4_0336 PF02796 Helix-turn-helix domain of resolvase YPD4_0336 PF00665 Integrase core domain YPD4_0337 PF07728 AAA domain (dynein-related subfamily) YPD4_0337 PF12102 Domain of unknown function (DUF3578) YPD4_0339 PF01555 DNA methylase YPD4_0345 PF05987 Bacterial protein of unknown function (DUF898) YPD4_0347 PF12833 Helix-turn-helix domain YPD4_0348 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPD4_0349 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPD4_0351 PF05524 PEP-utilising enzyme, N-terminal YPD4_0351 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPD4_0351 PF00391 PEP-utilising enzyme, mobile domain YPD4_0351 PF00381 PTS HPr component phosphorylation site YPD4_0351 PF02896 PEP-utilising enzyme, TIM barrel domain YPD4_0352 PF10696 Protein of unknown function (DUF2501) YPD4_0353 PF01791 DeoC/LacD family aldolase YPD4_0354 PF13407 Periplasmic binding protein domain YPD4_0355 PF02653 Branched-chain amino acid transport system / permease component YPD4_0356 PF02653 Branched-chain amino acid transport system / permease component YPD4_0357 PF00005 ABC transporter YPD4_0358 PF04198 Putative sugar-binding domain YPD4_0358 PF00325 Bacterial regulatory proteins, crp family YPD4_0359 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD4_0359 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPD4_0360 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPD4_0362 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD4_0363 PF00873 AcrB/AcrD/AcrF family YPD4_0364 PF01095 Pectinesterase YPD4_0365 PF00990 Diguanylate cyclase, GGDEF domain YPD4_0366 PF07256 Protein of unknown function (DUF1435) YPD4_0367 PF05175 Methyltransferase small domain YPD4_0367 PF08468 Methyltransferase small domain N-terminal YPD4_0368 PF03603 DNA polymerase III psi subunit YPD4_0369 PF00583 Acetyltransferase (GNAT) family YPD4_0370 PF03144 Elongation factor Tu domain 2 YPD4_0370 PF00009 Elongation factor Tu GTP binding domain YPD4_0370 PF16658 Class II release factor RF3, C-terminal domain YPD4_0371 PF04972 BON domain YPD4_0372 PF01734 Patatin-like phospholipase YPD4_0373 PF01026 TatD related DNase YPD4_0374 PF07662 Na+ dependent nucleoside transporter C-terminus YPD4_0374 PF07670 Nucleoside recognition YPD4_0374 PF01773 Na+ dependent nucleoside transporter N-terminus YPD4_0375 PF01791 DeoC/LacD family aldolase YPD4_0376 PF02885 Glycosyl transferase family, helical bundle domain YPD4_0376 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain YPD4_0376 PF00591 Glycosyl transferase family, a/b domain YPD4_0377 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain YPD4_0377 PF02885 Glycosyl transferase family, helical bundle domain YPD4_0377 PF00591 Glycosyl transferase family, a/b domain YPD4_0378 PF01676 Metalloenzyme superfamily YPD4_0379 PF01048 Phosphorylase superfamily YPD4_0380 PF10144 Bacterial virulence factor haemolysin YPD4_0381 PF18429 Domain of unknown function (DUF5609) YPD4_0382 PF18073 Rubredoxin metal binding domain YPD4_0383 PF01381 Helix-turn-helix YPD4_0383 PF13521 AAA domain YPD4_0385 PF12848 ABC transporter YPD4_0385 PF00005 ABC transporter YPD4_0386 PF12848 ABC transporter YPD4_0386 PF00005 ABC transporter YPD4_0387 PF00691 OmpA family YPD4_0388 PF00990 Diguanylate cyclase, GGDEF domain YPD4_0388 PF17152 Periplasmic sensor domain YPD4_0390 PF00690 Cation transporter/ATPase, N-terminus YPD4_0390 PF00689 Cation transporting ATPase, C-terminus YPD4_0391 PF01464 Transglycosylase SLT domain YPD4_0391 PF14718 Soluble lytic murein transglycosylase L domain YPD4_0392 PF01371 Trp repressor protein YPD4_0393 PF01931 Protein of unknown function DUF84 YPD4_0394 PF00300 Histidine phosphatase superfamily (branch 1) YPD4_0395 PF06445 GyrI-like small molecule binding domain YPD4_0395 PF12833 Helix-turn-helix domain YPD4_0396 PF05981 CreA protein YPD4_0397 PF00072 Response regulator receiver domain YPD4_0397 PF00486 Transcriptional regulatory protein, C terminal YPD4_0398 PF00742 Homoserine dehydrogenase YPD4_0398 PF13840 ACT domain YPD4_0398 PF00696 Amino acid kinase family YPD4_0398 PF01842 ACT domain YPD4_0398 PF03447 Homoserine dehydrogenase, NAD binding domain YPD4_0399 PF13840 ACT domain YPD4_0399 PF01842 ACT domain YPD4_0399 PF00742 Homoserine dehydrogenase YPD4_0399 PF03447 Homoserine dehydrogenase, NAD binding domain YPD4_0399 PF00696 Amino acid kinase family YPD4_0400 PF00288 GHMP kinases N terminal domain YPD4_0400 PF08544 GHMP kinases C terminal YPD4_0401 PF00291 Pyridoxal-phosphate dependent enzyme YPD4_0401 PF14821 Threonine synthase N terminus YPD4_0402 PF03883 Peroxide stress protein YaaA YPD4_0403 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPD4_0404 PF00994 Probable molybdopterin binding domain YPD4_0405 PF07690 Major Facilitator Superfamily YPD4_0407 PF01184 GPR1/FUN34/yaaH family YPD4_0408 PF00012 Hsp70 protein YPD4_0409 PF01556 DnaJ C terminal domain YPD4_0409 PF00226 DnaJ domain YPD4_0409 PF00684 DnaJ central domain YPD4_0410 PF06965 Na+/H+ antiporter 1 YPD4_0411 PF03466 LysR substrate binding domain YPD4_0411 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_0412 PF01687 Riboflavin kinase YPD4_0412 PF06574 FAD synthetase YPD4_0413 PF00133 tRNA synthetases class I (I, L, M and V) YPD4_0413 PF08264 Anticodon-binding domain of tRNA YPD4_0413 PF06827 Zinc finger found in FPG and IleRS YPD4_0414 PF01252 Signal peptidase (SPase) II YPD4_0415 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPD4_0416 PF02401 LytB protein YPD4_0417 PF01797 Transposase IS200 like YPD4_0418 PF05173 Dihydrodipicolinate reductase, C-terminus YPD4_0418 PF01113 Dihydrodipicolinate reductase, N-terminus YPD4_0419 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain YPD4_0419 PF00117 Glutamine amidotransferase class-I YPD4_0420 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPD4_0420 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YPD4_0420 PF02142 MGS-like domain YPD4_0421 PF01810 LysE type translocator YPD4_0422 PF06738 Putative threonine/serine exporter YPD4_0423 PF12821 Threonine/Serine exporter, ThrE YPD4_0424 PF00186 Dihydrofolate reductase YPD4_0425 PF01797 Transposase IS200 like YPD4_0427 PF00149 Calcineurin-like phosphoesterase YPD4_0428 PF04379 ApaG domain YPD4_0429 PF00398 Ribosomal RNA adenine dimethylase YPD4_0430 PF04166 Pyridoxal phosphate biosynthetic protein PdxA YPD4_0431 PF09312 SurA N-terminal domain YPD4_0431 PF00639 PPIC-type PPIASE domain YPD4_0432 PF04453 LPS transport system D YPD4_0432 PF03968 OstA-like protein YPD4_0433 PF05099 Tellurite resistance protein TerB YPD4_0433 PF00226 DnaJ domain YPD4_0434 PF00849 RNA pseudouridylate synthase YPD4_0443 PF10431 C-terminal, D2-small domain, of ClpB protein YPD4_0443 PF17871 AAA lid domain YPD4_0443 PF07724 AAA domain (Cdc48 subfamily) YPD4_0443 PF00004 ATPase family associated with various cellular activities (AAA) YPD4_0444 PF04717 Type VI secretion system, phage-baseplate injector YPD4_0452 PF05736 OprF membrane domain YPD4_0452 PF00691 OmpA family YPD4_0455 PF00176 SNF2 family N-terminal domain YPD4_0455 PF00271 Helicase conserved C-terminal domain YPD4_0455 PF18337 RapA N-terminal Tudor like domain YPD4_0455 PF12137 RNA polymerase recycling family C-terminal YPD4_0455 PF18339 RapA N-terminal Tudor like domain 1 YPD4_0456 PF00136 DNA polymerase family B YPD4_0456 PF03104 DNA polymerase family B, exonuclease domain YPD4_0457 PF09335 SNARE associated Golgi protein YPD4_0458 PF00005 ABC transporter YPD4_0459 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_0461 PF12793 Sugar transport-related sRNA regulator N-term YPD4_0461 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPD4_0462 PF07690 Major Facilitator Superfamily YPD4_0463 PF01695 IstB-like ATP binding protein YPD4_0464 PF02796 Helix-turn-helix domain of resolvase YPD4_0464 PF00665 Integrase core domain YPD4_0465 PF00694 Aconitase C-terminal domain YPD4_0466 PF00330 Aconitase family (aconitate hydratase) YPD4_0467 PF00180 Isocitrate/isopropylmalate dehydrogenase YPD4_0468 PF08502 LeuA allosteric (dimerisation) domain YPD4_0468 PF00682 HMGL-like YPD4_0469 PF03466 LysR substrate binding domain YPD4_0469 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_0470 PF00501 AMP-binding enzyme YPD4_0471 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPD4_0471 PF00205 Thiamine pyrophosphate enzyme, central domain YPD4_0471 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPD4_0472 PF10369 Small subunit of acetolactate synthase YPD4_0473 PF01797 Transposase IS200 like YPD4_0474 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPD4_0474 PF00356 Bacterial regulatory proteins, lacI family YPD4_0475 PF06610 L-alanine exporter YPD4_0476 PF02381 MraZ protein, putative antitoxin-like YPD4_0477 PF01795 MraW methylase family YPD4_0478 PF04999 Cell division protein FtsL YPD4_0479 PF03717 Penicillin-binding Protein dimerisation domain YPD4_0479 PF00905 Penicillin binding protein transpeptidase domain YPD4_0480 PF08245 Mur ligase middle domain YPD4_0480 PF01225 Mur ligase family, catalytic domain YPD4_0480 PF02875 Mur ligase family, glutamate ligase domain YPD4_0481 PF02875 Mur ligase family, glutamate ligase domain YPD4_0481 PF08245 Mur ligase middle domain YPD4_0481 PF01225 Mur ligase family, catalytic domain YPD4_0482 PF00953 Glycosyl transferase family 4 YPD4_0482 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 YPD4_0483 PF02875 Mur ligase family, glutamate ligase domain YPD4_0483 PF08245 Mur ligase middle domain YPD4_0484 PF01098 Cell cycle protein YPD4_0485 PF04101 Glycosyltransferase family 28 C-terminal domain YPD4_0485 PF03033 Glycosyltransferase family 28 N-terminal domain YPD4_0486 PF02875 Mur ligase family, glutamate ligase domain YPD4_0486 PF08245 Mur ligase middle domain YPD4_0486 PF01225 Mur ligase family, catalytic domain YPD4_0487 PF07478 D-ala D-ala ligase C-terminus YPD4_0487 PF01820 D-ala D-ala ligase N-terminus YPD4_0488 PF03799 Cell division protein FtsQ YPD4_0488 PF08478 POTRA domain, FtsQ-type YPD4_0489 PF02491 SHS2 domain inserted in FTSA YPD4_0490 PF00091 Tubulin/FtsZ family, GTPase domain YPD4_0490 PF12327 FtsZ family, C-terminal domain YPD4_0491 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase YPD4_0493 PF06558 Secretion monitor precursor protein (SecM) YPD4_0494 PF07516 SecA Wing and Scaffold domain YPD4_0494 PF01043 SecA preprotein cross-linking domain YPD4_0494 PF07517 SecA DEAD-like domain YPD4_0494 PF02810 SEC-C motif YPD4_0495 PF00293 NUDIX domain YPD4_0496 PF01695 IstB-like ATP binding protein YPD4_0497 PF02796 Helix-turn-helix domain of resolvase YPD4_0497 PF00665 Integrase core domain YPD4_0498 PF07681 DoxX YPD4_0499 PF07332 Putative Actinobacterial Holin-X, holin superfamily III YPD4_0500 PF05957 Bacterial protein of unknown function (DUF883) YPD4_0502 PF13721 SecD export protein N-terminal TM region YPD4_0503 PF09335 SNARE associated Golgi protein YPD4_0505 PF00392 Bacterial regulatory proteins, gntR family YPD4_0505 PF07729 FCD domain YPD4_0506 PF07690 Major Facilitator Superfamily YPD4_0507 PF02614 Glucuronate isomerase YPD4_0508 PF01232 Mannitol dehydrogenase Rossmann domain YPD4_0508 PF08125 Mannitol dehydrogenase C-terminal domain YPD4_0509 PF08666 SAF domain YPD4_0509 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus YPD4_0510 PF10688 Bacterial inner membrane protein YPD4_0512 PF00375 Sodium:dicarboxylate symporter family YPD4_0513 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPD4_0514 PF01863 Protein of unknown function DUF45 YPD4_0515 PF03797 Autotransporter beta-domain YPD4_0516 PF05175 Methyltransferase small domain YPD4_0517 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD4_0517 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPD4_0518 PF03729 Short repeat of unknown function (DUF308) YPD4_0521 PF00092 von Willebrand factor type A domain YPD4_0523 PF02342 TerD domain YPD4_0524 PF00092 von Willebrand factor type A domain YPD4_0525 PF08479 POTRA domain, ShlB-type YPD4_0525 PF17287 POTRA domain YPD4_0525 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPD4_0526 PF13332 Hemagglutinin repeat YPD4_0526 PF05860 haemagglutination activity domain YPD4_0526 PF04829 Pre-toxin domain with VENN motif YPD4_0526 PF13018 Extended Signal Peptide of Type V secretion system YPD4_0527 PF13018 Extended Signal Peptide of Type V secretion system YPD4_0527 PF13332 Hemagglutinin repeat YPD4_0527 PF05860 haemagglutination activity domain YPD4_0527 PF04829 Pre-toxin domain with VENN motif YPD4_0531 PF03459 TOBE domain YPD4_0531 PF17912 MalK OB fold domain YPD4_0531 PF00005 ABC transporter YPD4_0532 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain YPD4_0533 PF00356 Bacterial regulatory proteins, lacI family YPD4_0534 PF13416 Bacterial extracellular solute-binding protein YPD4_0535 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_0536 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_0538 PF14310 Fibronectin type III-like domain YPD4_0538 PF01915 Glycosyl hydrolase family 3 C-terminal domain YPD4_0538 PF00933 Glycosyl hydrolase family 3 N terminal domain YPD4_0540 PF04632 Fusaric acid resistance protein family YPD4_0541 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD4_0541 PF00529 HlyD membrane-fusion protein of T1SS YPD4_0546 PF01042 Endoribonuclease L-PSP YPD4_0550 PF03466 LysR substrate binding domain YPD4_0550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_0555 PF04539 Sigma-70 region 3 YPD4_0555 PF04546 Sigma-70, non-essential region YPD4_0555 PF04542 Sigma-70 region 2 YPD4_0555 PF00140 Sigma-70 factor, region 1.2 YPD4_0555 PF04545 Sigma-70, region 4 YPD4_0555 PF03979 Sigma-70 factor, region 1.1 YPD4_0556 PF01807 CHC2 zinc finger YPD4_0556 PF08278 DNA primase DnaG DnaB-binding YPD4_0556 PF10410 DnaB-helicase binding domain of primase YPD4_0556 PF08275 DNA primase catalytic core, N-terminal domain YPD4_0557 PF08275 DNA primase catalytic core, N-terminal domain YPD4_0557 PF08278 DNA primase DnaG DnaB-binding YPD4_0557 PF01807 CHC2 zinc finger YPD4_0557 PF10410 DnaB-helicase binding domain of primase YPD4_0558 PF00814 Glycoprotease family YPD4_0559 PF02660 Glycerol-3-phosphate acyltransferase YPD4_0560 PF02152 Dihydroneopterin aldolase YPD4_0561 PF02673 Bacitracin resistance protein BacA YPD4_0562 PF01743 Poly A polymerase head domain YPD4_0562 PF12627 Probable RNA and SrmB- binding site of polymerase A YPD4_0562 PF01966 HD domain YPD4_0563 PF01743 Poly A polymerase head domain YPD4_0563 PF12627 Probable RNA and SrmB- binding site of polymerase A YPD4_0563 PF01966 HD domain YPD4_0564 PF08239 Bacterial SH3 domain YPD4_0565 PF01928 CYTH domain YPD4_0566 PF03710 Glutamate-ammonia ligase adenylyltransferase YPD4_0566 PF08335 GlnD PII-uridylyltransferase YPD4_0567 PF01467 Cytidylyltransferase-like YPD4_0567 PF00294 pfkB family carbohydrate kinase YPD4_0568 PF13520 Amino acid permease YPD4_0569 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase YPD4_0570 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPD4_0571 PF03738 Glutathionylspermidine synthase preATP-grasp YPD4_0572 PF03738 Glutathionylspermidine synthase preATP-grasp YPD4_0573 PF06693 Protein of unknown function (DUF1190) YPD4_0574 PF02321 Outer membrane efflux protein YPD4_0575 PF00293 NUDIX domain YPD4_0576 PF06853 Protein of unknown function (DUF1249) YPD4_0577 PF00149 Calcineurin-like phosphoesterase YPD4_0578 PF05728 Uncharacterised protein family (UPF0227) YPD4_0579 PF00204 DNA gyrase B YPD4_0579 PF00986 DNA gyrase B subunit, carboxyl terminus YPD4_0579 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_0579 PF01751 Toprim domain YPD4_0580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_0580 PF03466 LysR substrate binding domain YPD4_0581 PF02525 Flavodoxin-like fold YPD4_0582 PF00521 DNA gyrase/topoisomerase IV, subunit A YPD4_0582 PF03989 DNA gyrase C-terminal domain, beta-propeller YPD4_0583 PF01553 Acyltransferase YPD4_0584 PF07731 Multicopper oxidase YPD4_0584 PF07732 Multicopper oxidase YPD4_0585 PF11842 Domain of unknown function (DUF3362) YPD4_0585 PF04055 Radical SAM superfamily YPD4_0585 PF08497 Radical SAM N-terminal YPD4_0586 PF04055 Radical SAM superfamily YPD4_0586 PF08497 Radical SAM N-terminal YPD4_0586 PF11842 Domain of unknown function (DUF3362) YPD4_0587 PF00248 Aldo/keto reductase family YPD4_0588 PF00465 Iron-containing alcohol dehydrogenase YPD4_0589 PF06719 AraC-type transcriptional regulator N-terminus YPD4_0589 PF12833 Helix-turn-helix domain YPD4_0590 PF09335 SNARE associated Golgi protein YPD4_0591 PF01053 Cys/Met metabolism PLP-dependent enzyme YPD4_0592 PF01618 MotA/TolQ/ExbB proton channel family YPD4_0593 PF02472 Biopolymer transport protein ExbD/TolR YPD4_0600 PF00437 Type II/IV secretion system protein YPD4_0602 PF13629 Pilus formation protein N terminal region YPD4_0602 PF00263 Bacterial type II and III secretion system protein YPD4_0602 PF04972 BON domain YPD4_0603 PF04972 BON domain YPD4_0603 PF13629 Pilus formation protein N terminal region YPD4_0603 PF00263 Bacterial type II and III secretion system protein YPD4_0606 PF01797 Transposase IS200 like YPD4_0607 PF01797 Transposase IS200 like YPD4_0608 PF00577 Outer membrane usher protein YPD4_0608 PF13954 PapC N-terminal domain YPD4_0608 PF13953 PapC C-terminal domain YPD4_0609 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD4_0609 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD4_0610 PF09222 Fimbrial adhesin F17-AG, lectin domain YPD4_0610 PF00419 Fimbrial protein YPD4_0611 PF01497 Periplasmic binding protein YPD4_0613 PF00771 FHIPEP family YPD4_0614 PF00771 FHIPEP family YPD4_0615 PF01312 FlhB HrpN YscU SpaS Family YPD4_0616 PF01311 Bacterial export proteins, family 1 YPD4_0617 PF00813 FliP family YPD4_0618 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPD4_0620 PF02954 Bacterial regulatory protein, Fis family YPD4_0620 PF00072 Response regulator receiver domain YPD4_0620 PF00158 Sigma-54 interaction domain YPD4_0621 PF02049 Flagellar hook-basal body complex protein FliE YPD4_0622 PF08345 Flagellar M-ring protein C-terminal YPD4_0622 PF01514 Secretory protein of YscJ/FliF family YPD4_0625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPD4_0625 PF18269 T3SS EscN ATPase C-terminal domain YPD4_0628 PF13144 Chaperone for flagella basal body P-ring formation YPD4_0629 PF00460 Flagella basal body rod protein YPD4_0630 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD4_0630 PF00460 Flagella basal body rod protein YPD4_0631 PF03963 Flagellar hook capping protein - N-terminal region YPD4_0631 PF13861 FlgD Tudor-like domain YPD4_0631 PF13860 FlgD Ig-like domain YPD4_0632 PF07559 Flagellar basal body protein FlaE YPD4_0632 PF00460 Flagella basal body rod protein YPD4_0632 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD4_0634 PF00460 Flagella basal body rod protein YPD4_0634 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD4_0635 PF00460 Flagella basal body rod protein YPD4_0635 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD4_0636 PF02107 Flagellar L-ring protein YPD4_0637 PF02119 Flagellar P-ring protein YPD4_0638 PF00460 Flagella basal body rod protein YPD4_0638 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD4_0642 PF18500 CadC C-terminal domain 1 YPD4_0642 PF00486 Transcriptional regulatory protein, C terminal YPD4_0643 PF00700 Bacterial flagellin C-terminal helical region YPD4_0643 PF00669 Bacterial flagellin N-terminal helical region YPD4_0644 PF00700 Bacterial flagellin C-terminal helical region YPD4_0644 PF00669 Bacterial flagellin N-terminal helical region YPD4_0645 PF00669 Bacterial flagellin N-terminal helical region YPD4_0645 PF00700 Bacterial flagellin C-terminal helical region YPD4_0646 PF02465 Flagellar hook-associated protein 2 N-terminus YPD4_0646 PF07195 Flagellar hook-associated protein 2 C-terminus YPD4_0646 PF07196 Flagellin hook IN motif YPD4_0651 PF04545 Sigma-70, region 4 YPD4_0651 PF04542 Sigma-70 region 2 YPD4_0652 PF01618 MotA/TolQ/ExbB proton channel family YPD4_0653 PF13677 Membrane MotB of proton-channel complex MotA/MotB YPD4_0653 PF00691 OmpA family YPD4_0657 PF13276 HTH-like domain YPD4_0657 PF00665 Integrase core domain YPD4_0657 PF13333 Integrase core domain YPD4_0659 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPD4_0659 PF00356 Bacterial regulatory proteins, lacI family YPD4_0660 PF00939 Sodium:sulfate symporter transmembrane region YPD4_0662 PF03527 RHS protein YPD4_0662 PF05593 RHS Repeat YPD4_0664 PF04717 Type VI secretion system, phage-baseplate injector YPD4_0665 PF12951 Passenger-associated-transport-repeat YPD4_0666 PF12951 Passenger-associated-transport-repeat YPD4_0667 PF12951 Passenger-associated-transport-repeat YPD4_0669 PF02447 GntP family permease YPD4_0672 PF00005 ABC transporter YPD4_0672 PF00664 ABC transporter transmembrane region YPD4_0673 PF04954 Siderophore-interacting protein YPD4_0673 PF08021 Siderophore-interacting FAD-binding domain YPD4_0673 PF00005 ABC transporter YPD4_0673 PF00664 ABC transporter transmembrane region YPD4_0675 PF00975 Thioesterase domain YPD4_0678 PF00550 Phosphopantetheine attachment site YPD4_0678 PF08242 Methyltransferase domain YPD4_0678 PF00501 AMP-binding enzyme YPD4_0678 PF00668 Condensation domain YPD4_0679 PF00501 AMP-binding enzyme YPD4_0679 PF00668 Condensation domain YPD4_0679 PF13193 AMP-binding enzyme C-terminal domain YPD4_0680 PF00550 Phosphopantetheine attachment site YPD4_0680 PF00668 Condensation domain YPD4_0680 PF00501 AMP-binding enzyme YPD4_0680 PF08242 Methyltransferase domain YPD4_0681 PF01695 IstB-like ATP binding protein YPD4_0682 PF02796 Helix-turn-helix domain of resolvase YPD4_0682 PF00665 Integrase core domain YPD4_0683 PF00202 Aminotransferase class-III YPD4_0683 PF00109 Beta-ketoacyl synthase, N-terminal domain YPD4_0683 PF00550 Phosphopantetheine attachment site YPD4_0683 PF16197 Ketoacyl-synthetase C-terminal extension YPD4_0683 PF02801 Beta-ketoacyl synthase, C-terminal domain YPD4_0683 PF00501 AMP-binding enzyme YPD4_0683 PF13193 AMP-binding enzyme C-terminal domain YPD4_0683 PF00668 Condensation domain YPD4_0684 PF07715 TonB-dependent Receptor Plug Domain YPD4_0684 PF00593 TonB dependent receptor YPD4_0685 PF07687 Peptidase dimerisation domain YPD4_0685 PF01546 Peptidase family M20/M25/M40 YPD4_0686 PF03806 AbgT putative transporter family YPD4_0687 PF12468 Type III secretion system leucine rich repeat protein YPD4_0687 PF14496 C-terminal novel E3 ligase, LRR-interacting YPD4_0688 PF12468 Type III secretion system leucine rich repeat protein YPD4_0688 PF14496 C-terminal novel E3 ligase, LRR-interacting YPD4_0688 PF12468 Type III secretion system leucine rich repeat protein YPD4_0688 PF14496 C-terminal novel E3 ligase, LRR-interacting YPD4_0689 PF14496 C-terminal novel E3 ligase, LRR-interacting YPD4_0689 PF12468 Type III secretion system leucine rich repeat protein YPD4_0690 PF03797 Autotransporter beta-domain YPD4_0692 PF07906 ShET2 enterotoxin, N-terminal region YPD4_0693 PF00873 AcrB/AcrD/AcrF family YPD4_0694 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD4_0694 PF00529 HlyD membrane-fusion protein of T1SS YPD4_0695 PF03707 Bacterial signalling protein N terminal repeat YPD4_0695 PF13188 PAS domain YPD4_0695 PF00563 EAL domain YPD4_0695 PF00990 Diguanylate cyclase, GGDEF domain YPD4_0696 PF13333 Integrase core domain YPD4_0696 PF13276 HTH-like domain YPD4_0696 PF00665 Integrase core domain YPD4_0699 PF07715 TonB-dependent Receptor Plug Domain YPD4_0699 PF00593 TonB dependent receptor YPD4_0700 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPD4_0701 PF06276 Ferric iron reductase FhuF-like transporter YPD4_0701 PF04183 IucA / IucC family YPD4_0703 PF04183 IucA / IucC family YPD4_0703 PF06276 Ferric iron reductase FhuF-like transporter YPD4_0704 PF04183 IucA / IucC family YPD4_0704 PF06276 Ferric iron reductase FhuF-like transporter YPD4_0708 PF00196 Bacterial regulatory proteins, luxR family YPD4_0708 PF03472 Autoinducer binding domain YPD4_0709 PF00765 Autoinducer synthase YPD4_0710 PF02517 CPBP intramembrane metalloprotease YPD4_0717 PF05736 OprF membrane domain YPD4_0717 PF00691 OmpA family YPD4_0719 PF00004 ATPase family associated with various cellular activities (AAA) YPD4_0719 PF10431 C-terminal, D2-small domain, of ClpB protein YPD4_0719 PF07724 AAA domain (Cdc48 subfamily) YPD4_0719 PF17871 AAA lid domain YPD4_0723 PF03400 IS1 transposase YPD4_0725 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPD4_0725 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPD4_0725 PF01276 Orn/Lys/Arg decarboxylase, major domain YPD4_0726 PF13407 Periplasmic binding protein domain YPD4_0727 PF00005 ABC transporter YPD4_0728 PF02653 Branched-chain amino acid transport system / permease component YPD4_0729 PF07715 TonB-dependent Receptor Plug Domain YPD4_0731 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain YPD4_0731 PF01464 Transglycosylase SLT domain YPD4_0732 PF14815 NUDIX domain YPD4_0732 PF10576 Iron-sulfur binding domain of endonuclease III YPD4_0732 PF00633 Helix-hairpin-helix motif YPD4_0732 PF00730 HhH-GPD superfamily base excision DNA repair protein YPD4_0733 PF02390 Putative methyltransferase YPD4_0734 PF04320 Protein with unknown function (DUF469) YPD4_0735 PF04960 Glutaminase YPD4_0736 PF11101 Protein of unknown function (DUF2884) YPD4_0737 PF11713 Peptidase C80 family YPD4_0737 PF16671 Actin cross-linking domain YPD4_0737 PF12146 Serine aminopeptidase, S33 YPD4_0737 PF11647 Membrane Localization Domain YPD4_0737 PF07634 RtxA repeat YPD4_0738 PF04055 Radical SAM superfamily YPD4_0738 PF06969 HemN C-terminal domain YPD4_0739 PF01725 Ham1 family YPD4_0740 PF02594 Uncharacterised ACR, YggU family COG1872 YPD4_0741 PF02325 YGGT family YPD4_0742 PF03807 NADP oxidoreductase coenzyme F420-dependent YPD4_0742 PF14748 Pyrroline-5-carboxylate reductase dimerisation YPD4_0743 PF01168 Alanine racemase, N-terminal domain YPD4_0744 PF00437 Type II/IV secretion system protein YPD4_0745 PF04371 Porphyromonas-type peptidyl-arginine deiminase YPD4_0746 PF00795 Carbon-nitrogen hydrolase YPD4_0747 PF03652 Holliday junction resolvase YPD4_0748 PF02622 Uncharacterized ACR, COG1678 YPD4_0749 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain YPD4_0749 PF02951 Prokaryotic glutathione synthetase, N-terminal domain YPD4_0750 PF04452 RNA methyltransferase YPD4_0751 PF04231 Endonuclease I YPD4_0752 PF17283 SprT-like zinc ribbon domain YPD4_0752 PF10263 SprT-like family YPD4_0753 PF02773 S-adenosylmethionine synthetase, C-terminal domain YPD4_0753 PF02772 S-adenosylmethionine synthetase, central domain YPD4_0753 PF00438 S-adenosylmethionine synthetase, N-terminal domain YPD4_0754 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPD4_0754 PF17810 Arginine decarboxylase helical bundle domain YPD4_0754 PF17944 Arginine decarboxylase C-terminal helical extension YPD4_0755 PF00355 Rieske [2Fe-2S] domain YPD4_0756 PF01435 Peptidase family M48 YPD4_0757 PF02780 Transketolase, C-terminal domain YPD4_0757 PF00456 Transketolase, thiamine diphosphate binding domain YPD4_0757 PF02779 Transketolase, pyrimidine binding domain YPD4_0759 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPD4_0759 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPD4_0760 PF00162 Phosphoglycerate kinase YPD4_0761 PF01116 Fructose-bisphosphate aldolase class-II YPD4_0762 PF05552 Conserved TM helix YPD4_0762 PF00924 Mechanosensitive ion channel YPD4_0763 PF01810 LysE type translocator YPD4_0764 PF04402 Protein of unknown function (DUF541) YPD4_0765 PF03466 LysR substrate binding domain YPD4_0765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_0766 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPD4_0767 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPD4_0767 PF01842 ACT domain YPD4_0767 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPD4_0768 PF01812 5-formyltetrahydrofolate cyclo-ligase family YPD4_0769 PF05164 Cell division protein ZapA YPD4_0770 PF03695 Uncharacterised protein family (UPF0149) YPD4_0771 PF05195 Aminopeptidase P, N-terminal domain YPD4_0771 PF00557 Metallopeptidase family M24 YPD4_0772 PF01494 FAD binding domain YPD4_0773 PF01494 FAD binding domain YPD4_0774 PF08669 Glycine cleavage T-protein C-terminal barrel domain YPD4_0774 PF01571 Aminomethyltransferase folate-binding domain YPD4_0775 PF01597 Glycine cleavage H-protein YPD4_0776 PF02347 Glycine cleavage system P-protein YPD4_0778 PF05658 Head domain of trimeric autotransporter adhesin YPD4_0778 PF05662 Coiled stalk of trimeric autotransporter adhesin YPD4_0778 PF05658 Head domain of trimeric autotransporter adhesin YPD4_0778 PF03895 YadA-like membrane anchor domain YPD4_0778 PF13018 Extended Signal Peptide of Type V secretion system YPD4_0778 PF13018 Extended Signal Peptide of Type V secretion system YPD4_0778 PF03895 YadA-like membrane anchor domain YPD4_0778 PF05662 Coiled stalk of trimeric autotransporter adhesin YPD4_0780 PF03006 Haemolysin-III related YPD4_0782 PF01571 Aminomethyltransferase folate-binding domain YPD4_0783 PF07254 Membrane-bound toxin component of toxin-antitoxin system YPD4_0784 PF00072 Response regulator receiver domain YPD4_0784 PF00486 Transcriptional regulatory protein, C terminal YPD4_0785 PF00512 His Kinase A (phospho-acceptor) domain YPD4_0785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_0785 PF00672 HAMP domain YPD4_0786 PF06123 Inner membrane protein CreD YPD4_0787 PF00258 Flavodoxin YPD4_0788 PF02899 Phage integrase, N-terminal SAM-like domain YPD4_0788 PF00589 Phage integrase family YPD4_0789 PF13098 Thioredoxin-like domain YPD4_0789 PF10411 Disulfide bond isomerase protein N-terminus YPD4_0790 PF01368 DHH family YPD4_0790 PF02272 DHHA1 domain YPD4_0790 PF17768 RecJ OB domain YPD4_0791 PF03462 PCRF domain YPD4_0791 PF00472 RF-1 domain YPD4_0792 PF01336 OB-fold nucleic acid binding domain YPD4_0792 PF00152 tRNA synthetases class II (D, K and N) YPD4_0793 PF13356 Arm DNA-binding domain YPD4_0793 PF14659 Phage integrase, N-terminal SAM-like domain YPD4_0793 PF00589 Phage integrase family YPD4_0795 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA YPD4_0807 PF03551 Transcriptional regulator PadR-like family YPD4_0808 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family YPD4_0810 PF13407 Periplasmic binding protein domain YPD4_0811 PF02653 Branched-chain amino acid transport system / permease component YPD4_0812 PF00005 ABC transporter YPD4_0813 PF00005 ABC transporter YPD4_0813 PF17912 MalK OB fold domain YPD4_0814 PF13416 Bacterial extracellular solute-binding protein YPD4_0815 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_0816 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_0817 PF07745 Glycosyl hydrolase family 53 YPD4_0818 PF08532 Beta-galactosidase trimerisation domain YPD4_0818 PF08533 Beta-galactosidase C-terminal domain YPD4_0818 PF02449 Beta-galactosidase YPD4_0819 PF02378 Phosphotransferase system, EIIC YPD4_0819 PF00367 phosphotransferase system, EIIB YPD4_0820 PF02264 LamB porin YPD4_0821 PF00356 Bacterial regulatory proteins, lacI family YPD4_0822 PF01055 Glycosyl hydrolases family 31 YPD4_0822 PF13802 Galactose mutarotase-like YPD4_0822 PF17137 Domain of unknown function (DUF5110) YPD4_0822 PF16338 Domain of unknown function (DUF4968) YPD4_0823 PF07690 Major Facilitator Superfamily YPD4_0824 PF00356 Bacterial regulatory proteins, lacI family YPD4_0826 PF01116 Fructose-bisphosphate aldolase class-II YPD4_0828 PF00884 Sulfatase YPD4_0829 PF04055 Radical SAM superfamily YPD4_0829 PF13186 Iron-sulfur cluster-binding domain YPD4_0832 PF01979 Amidohydrolase family YPD4_0833 PF03610 PTS system fructose IIA component YPD4_0834 PF03613 PTS system mannose/fructose/sorbose family IID component YPD4_0835 PF03609 PTS system sorbose-specific iic component YPD4_0836 PF03830 PTS system sorbose subfamily IIB component YPD4_0837 PF01380 SIS domain YPD4_0838 PF08013 Tagatose 6 phosphate kinase YPD4_0839 PF08220 DeoR-like helix-turn-helix domain YPD4_0839 PF00455 DeoR C terminal sensor domain YPD4_0840 PF00884 Sulfatase YPD4_0841 PF01797 Transposase IS200 like YPD4_0842 PF00665 Integrase core domain YPD4_0842 PF02796 Helix-turn-helix domain of resolvase YPD4_0843 PF01695 IstB-like ATP binding protein YPD4_0844 PF02278 Polysaccharide lyase family 8, super-sandwich domain YPD4_0844 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain YPD4_0844 PF09092 Lyase, N terminal YPD4_0844 PF09093 Lyase, catalytic YPD4_0847 PF00484 Carbonic anhydrase YPD4_0850 PF00263 Bacterial type II and III secretion system protein YPD4_0850 PF03958 Bacterial type II/III secretion system short domain YPD4_0852 PF00482 Type II secretion system (T2SS), protein F YPD4_0853 PF07963 Prokaryotic N-terminal methylation motif YPD4_0853 PF08334 Type II secretion system (T2SS), protein G YPD4_0858 PF01478 Type IV leader peptidase family YPD4_0858 PF06750 Bacterial Peptidase A24 N-terminal domain YPD4_0861 PF02203 Tar ligand binding domain homologue YPD4_0861 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPD4_0861 PF00672 HAMP domain YPD4_0864 PF03466 LysR substrate binding domain YPD4_0864 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_0865 PF07690 Major Facilitator Superfamily YPD4_0866 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_0866 PF03466 LysR substrate binding domain YPD4_0867 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPD4_0867 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain YPD4_0868 PF00356 Bacterial regulatory proteins, lacI family YPD4_0869 PF01568 Molydopterin dinucleotide binding domain YPD4_0869 PF00384 Molybdopterin oxidoreductase YPD4_0870 PF01553 Acyltransferase YPD4_0870 PF00501 AMP-binding enzyme YPD4_0870 PF13193 AMP-binding enzyme C-terminal domain YPD4_0871 PF07690 Major Facilitator Superfamily YPD4_0872 PF00248 Aldo/keto reductase family YPD4_0873 PF02976 DNA mismatch repair enzyme MutH YPD4_0874 PF00293 NUDIX domain YPD4_0875 PF05524 PEP-utilising enzyme, N-terminal YPD4_0875 PF02896 PEP-utilising enzyme, TIM barrel domain YPD4_0875 PF00391 PEP-utilising enzyme, mobile domain YPD4_0875 PF01590 GAF domain YPD4_0876 PF01790 Prolipoprotein diacylglyceryl transferase YPD4_0877 PF00303 Thymidylate synthase YPD4_0878 PF02796 Helix-turn-helix domain of resolvase YPD4_0878 PF00665 Integrase core domain YPD4_0879 PF01695 IstB-like ATP binding protein YPD4_0883 PF17946 RecC C-terminal domain YPD4_0884 PF16187 Middle or third domain of peptidase_M16 YPD4_0884 PF05193 Peptidase M16 inactive domain YPD4_0884 PF00675 Insulinase (Peptidase family M16) YPD4_0885 PF12705 PD-(D/E)XK nuclease superfamily YPD4_0885 PF13361 UvrD-like helicase C-terminal domain YPD4_0885 PF00580 UvrD/REP helicase N-terminal domain YPD4_0886 PF12705 PD-(D/E)XK nuclease superfamily YPD4_0886 PF13361 UvrD-like helicase C-terminal domain YPD4_0886 PF00580 UvrD/REP helicase N-terminal domain YPD4_0887 PF13538 UvrD-like helicase C-terminal domain YPD4_0888 PF00696 Amino acid kinase family YPD4_0888 PF00583 Acetyltransferase (GNAT) family YPD4_0889 PF11741 AMIN domain YPD4_0889 PF01520 N-acetylmuramoyl-L-alanine amidase YPD4_0890 PF03562 MltA specific insert domain YPD4_0890 PF06725 3D domain YPD4_0891 PF00899 ThiF family YPD4_0892 PF02657 Fe-S metabolism associated domain YPD4_0893 PF00266 Aminotransferase class-V YPD4_0894 PF03466 LysR substrate binding domain YPD4_0894 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_0895 PF04241 Protein of unknown function (DUF423) YPD4_0896 PF01728 FtsJ-like methyltransferase YPD4_0896 PF18125 RlmM ferredoxin-like domain YPD4_0897 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPD4_0897 PF01367 5'-3' exonuclease, C-terminal SAM fold YPD4_0898 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases YPD4_0898 PF11892 Domain of unknown function (DUF3412) YPD4_0898 PF03641 Possible lysine decarboxylase YPD4_0899 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term YPD4_0899 PF14489 QueF-like protein YPD4_0900 PF07348 Syd protein (SUKH-2) YPD4_0901 PF01797 Transposase IS200 like YPD4_0902 PF04287 tRNA pseudouridine synthase C YPD4_0903 PF00849 RNA pseudouridylate synthase YPD4_0904 PF00258 Flavodoxin YPD4_0905 PF11944 Protein of unknown function (DUF3461) YPD4_0906 PF14602 Hexapeptide repeat of succinyl-transferase YPD4_0906 PF00132 Bacterial transferase hexapeptide (six repeats) YPD4_0906 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal YPD4_0907 PF01966 HD domain YPD4_0907 PF08335 GlnD PII-uridylyltransferase YPD4_0907 PF01909 Nucleotidyltransferase domain YPD4_0907 PF01842 ACT domain YPD4_0908 PF00557 Metallopeptidase family M24 YPD4_0909 PF00318 Ribosomal protein S2 YPD4_0910 PF00889 Elongation factor TS YPD4_0911 PF00889 Elongation factor TS YPD4_0912 PF00696 Amino acid kinase family YPD4_0913 PF01765 Ribosome recycling factor YPD4_0914 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain YPD4_0914 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase YPD4_0914 PF13288 DXP reductoisomerase C-terminal domain YPD4_0915 PF01255 Putative undecaprenyl diphosphate synthase YPD4_0917 PF17820 PDZ domain YPD4_0917 PF02163 Peptidase family M50 YPD4_0918 PF07244 Surface antigen variable number repeat YPD4_0918 PF01103 Surface antigen YPD4_0919 PF01103 Surface antigen YPD4_0919 PF07244 Surface antigen variable number repeat YPD4_0920 PF03938 Outer membrane protein (OmpH-like) YPD4_0921 PF00132 Bacterial transferase hexapeptide (six repeats) YPD4_0921 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD YPD4_0922 PF07977 FabA-like domain YPD4_0923 PF00132 Bacterial transferase hexapeptide (six repeats) YPD4_0923 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 YPD4_0924 PF02684 Lipid-A-disaccharide synthetase YPD4_0925 PF01351 Ribonuclease HII YPD4_0926 PF07733 Bacterial DNA polymerase III alpha NTPase domain YPD4_0926 PF02811 PHP domain YPD4_0926 PF01336 OB-fold nucleic acid binding domain YPD4_0926 PF14579 Helix-hairpin-helix motif YPD4_0926 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YPD4_0927 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit YPD4_0928 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPD4_0929 PF01171 PP-loop family YPD4_0929 PF11734 TilS substrate C-terminal domain YPD4_0929 PF09179 TilS substrate binding domain YPD4_0930 PF00034 Cytochrome c YPD4_0931 PF07152 YaeQ protein YPD4_0932 PF00472 RF-1 domain YPD4_0933 PF04170 NlpE N-terminal domain YPD4_0933 PF17185 NlpE C-terminal OB domain YPD4_0934 PF04073 Aminoacyl-tRNA editing domain YPD4_0934 PF03129 Anticodon binding domain YPD4_0934 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPD4_0935 PF01980 tRNA-methyltransferase O YPD4_0935 PF18389 TrmO C-terminal domain YPD4_0936 PF03180 NLPA lipoprotein YPD4_0937 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_0938 PF00005 ABC transporter YPD4_0938 PF09383 NIL domain YPD4_0940 PF00248 Aldo/keto reductase family YPD4_0942 PF03372 Endonuclease/Exonuclease/phosphatase family YPD4_0943 PF01464 Transglycosylase SLT domain YPD4_0943 PF01476 LysM domain YPD4_0944 PF16123 Hydroxyacylglutathione hydrolase C-terminus YPD4_0944 PF00753 Metallo-beta-lactamase superfamily YPD4_0945 PF08241 Methyltransferase domain YPD4_0946 PF00075 RNase H YPD4_0947 PF00929 Exonuclease YPD4_0948 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin YPD4_0949 PF01695 IstB-like ATP binding protein YPD4_0950 PF02796 Helix-turn-helix domain of resolvase YPD4_0950 PF00665 Integrase core domain YPD4_0956 PF13356 Arm DNA-binding domain YPD4_0956 PF00589 Phage integrase family YPD4_0958 PF01668 SmpB protein YPD4_0959 PF03364 Polyketide cyclase / dehydrase and lipid transport YPD4_0960 PF04355 SmpA / OmlA family YPD4_0961 PF02463 RecF/RecN/SMC N terminal domain YPD4_0962 PF01513 ATP-NAD kinase YPD4_0963 PF01025 GrpE YPD4_0964 PF00285 Citrate synthase, C-terminal domain YPD4_0965 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YPD4_0966 PF02910 Fumarate reductase flavoprotein C-term YPD4_0966 PF00890 FAD binding domain YPD4_0967 PF13085 2Fe-2S iron-sulfur cluster binding domain YPD4_0968 PF16870 2-oxoglutarate dehydrogenase C-terminal YPD4_0968 PF00676 Dehydrogenase E1 component YPD4_0968 PF16078 2-oxoglutarate dehydrogenase N-terminus YPD4_0968 PF02779 Transketolase, pyrimidine binding domain YPD4_0969 PF02817 e3 binding domain YPD4_0969 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPD4_0969 PF00364 Biotin-requiring enzyme YPD4_0970 PF08442 ATP-grasp domain YPD4_0970 PF00549 CoA-ligase YPD4_0971 PF00549 CoA-ligase YPD4_0971 PF02629 CoA binding domain YPD4_0972 PF01654 Cytochrome bd terminal oxidase subunit I YPD4_0973 PF02322 Cytochrome bd terminal oxidase subunit II YPD4_0974 PF01618 MotA/TolQ/ExbB proton channel family YPD4_0975 PF02472 Biopolymer transport protein ExbD/TolR YPD4_0976 PF06519 TolA C-terminal YPD4_0976 PF06519 TolA C-terminal YPD4_0977 PF04052 TolB amino-terminal domain YPD4_0977 PF07676 WD40-like Beta Propeller Repeat YPD4_0978 PF00691 OmpA family YPD4_0979 PF16331 TolA binding protein trimerisation YPD4_0979 PF13174 Tetratricopeptide repeat YPD4_0980 PF02445 Quinolinate synthetase A protein YPD4_0981 PF04973 Nicotinamide mononucleotide transporter YPD4_0982 PF01545 Cation efflux family YPD4_0983 PF00793 DAHP synthetase I family YPD4_0984 PF01695 IstB-like ATP binding protein YPD4_0985 PF00665 Integrase core domain YPD4_0985 PF02796 Helix-turn-helix domain of resolvase YPD4_0986 PF00300 Histidine phosphatase superfamily (branch 1) YPD4_0988 PF01263 Aldose 1-epimerase YPD4_0989 PF08544 GHMP kinases C terminal YPD4_0989 PF00288 GHMP kinases N terminal domain YPD4_0989 PF10509 Galactokinase galactose-binding signature YPD4_0990 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain YPD4_0990 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain YPD4_0991 PF16363 GDP-mannose 4,6 dehydratase YPD4_0993 PF00005 ABC transporter YPD4_0994 PF03459 TOBE domain YPD4_0994 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_0996 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_0997 PF03459 TOBE domain YPD4_0997 PF00005 ABC transporter YPD4_0999 PF10282 Lactonase, 7-bladed beta-propeller YPD4_1000 PF00202 Aminotransferase class-III YPD4_1001 PF00202 Aminotransferase class-III YPD4_1002 PF06968 Biotin and Thiamin Synthesis associated domain YPD4_1002 PF04055 Radical SAM superfamily YPD4_1003 PF00155 Aminotransferase class I and II YPD4_1004 PF08241 Methyltransferase domain YPD4_1007 PF00271 Helicase conserved C-terminal domain YPD4_1007 PF12344 Ultra-violet resistance protein B YPD4_1007 PF17757 UvrB interaction domain YPD4_1007 PF02151 UvrB/uvrC motif YPD4_1007 PF04851 Type III restriction enzyme, res subunit YPD4_1008 PF01933 Uncharacterised protein family UPF0052 YPD4_1009 PF04055 Radical SAM superfamily YPD4_1009 PF06463 Molybdenum Cofactor Synthesis C YPD4_1010 PF01967 MoaC family YPD4_1011 PF02391 MoaE protein YPD4_1012 PF01027 Inhibitor of apoptosis-promoting Bax1 YPD4_1013 PF01797 Transposase IS200 like YPD4_1014 PF00732 GMC oxidoreductase YPD4_1014 PF05199 GMC oxidoreductase YPD4_1015 PF00171 Aldehyde dehydrogenase family YPD4_1016 PF00440 Bacterial regulatory proteins, tetR family YPD4_1016 PF13977 BetI-type transcriptional repressor, C-terminal YPD4_1017 PF02028 BCCT, betaine/carnitine/choline family transporter YPD4_1018 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_1018 PF03466 LysR substrate binding domain YPD4_1020 PF01048 Phosphorylase superfamily YPD4_1021 PF03825 Nucleoside H+ symporter YPD4_1022 PF01797 Transposase IS200 like YPD4_1023 PF03825 Nucleoside H+ symporter YPD4_1024 PF13801 Heavy-metal resistance YPD4_1025 PF00512 His Kinase A (phospho-acceptor) domain YPD4_1025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_1026 PF00158 Sigma-54 interaction domain YPD4_1026 PF02954 Bacterial regulatory protein, Fis family YPD4_1026 PF00072 Response regulator receiver domain YPD4_1027 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPD4_1028 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_1028 PF03466 LysR substrate binding domain YPD4_1032 PF00005 ABC transporter YPD4_1033 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD4_1034 PF09209 Tetracyclin repressor-like, C-terminal domain YPD4_1034 PF00440 Bacterial regulatory proteins, tetR family YPD4_1035 PF00271 Helicase conserved C-terminal domain YPD4_1035 PF00270 DEAD/DEAH box helicase YPD4_1038 PF00872 Transposase, Mutator family YPD4_1039 PF00872 Transposase, Mutator family YPD4_1040 PF02371 Transposase IS116/IS110/IS902 family YPD4_1040 PF01548 Transposase YPD4_1041 PF00270 DEAD/DEAH box helicase YPD4_1041 PF00271 Helicase conserved C-terminal domain YPD4_1044 PF01207 Dihydrouridine synthase (Dus) YPD4_1045 PF00768 D-alanyl-D-alanine carboxypeptidase YPD4_1046 PF09330 D-lactate dehydrogenase, membrane binding YPD4_1046 PF01565 FAD binding domain YPD4_1047 PF01928 CYTH domain YPD4_1048 PF01844 HNH endonuclease YPD4_1050 PF00005 ABC transporter YPD4_1052 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_1053 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_1054 PF07308 Protein of unknown function (DUF1456) YPD4_1055 PF13188 PAS domain YPD4_1055 PF02954 Bacterial regulatory protein, Fis family YPD4_1055 PF00158 Sigma-54 interaction domain YPD4_1056 PF02653 Branched-chain amino acid transport system / permease component YPD4_1057 PF02653 Branched-chain amino acid transport system / permease component YPD4_1058 PF00005 ABC transporter YPD4_1059 PF00005 ABC transporter YPD4_1062 PF00581 Rhodanese-like domain YPD4_1063 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPD4_1064 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPD4_1065 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_1066 PF00005 ABC transporter YPD4_1067 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_1068 PF13520 Amino acid permease YPD4_1069 PF01276 Orn/Lys/Arg decarboxylase, major domain YPD4_1069 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPD4_1069 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPD4_1070 PF00892 EamA-like transporter family YPD4_1071 PF00267 Gram-negative porin YPD4_1072 PF13307 Helicase C-terminal domain YPD4_1072 PF06733 DEAD_2 YPD4_1073 PF00199 Catalase YPD4_1073 PF06628 Catalase-related immune-responsive YPD4_1074 PF07437 YfaZ precursor YPD4_1075 PF03222 Tryptophan/tyrosine permease family YPD4_1076 PF00994 Probable molybdopterin binding domain YPD4_1077 PF03974 Ecotin YPD4_1078 PF00268 Ribonucleotide reductase, small chain YPD4_1079 PF00317 Ribonucleotide reductase, all-alpha domain YPD4_1079 PF02867 Ribonucleotide reductase, barrel domain YPD4_1079 PF03477 ATP cone domain YPD4_1081 PF00521 DNA gyrase/topoisomerase IV, subunit A YPD4_1081 PF03989 DNA gyrase C-terminal domain, beta-propeller YPD4_1082 PF09456 RcsC Alpha-Beta-Loop (ABL) YPD4_1082 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_1082 PF00512 His Kinase A (phospho-acceptor) domain YPD4_1082 PF00072 Response regulator receiver domain YPD4_1083 PF00072 Response regulator receiver domain YPD4_1083 PF00196 Bacterial regulatory proteins, luxR family YPD4_1084 PF16359 RcsD-ABL domain YPD4_1084 PF01627 Hpt domain YPD4_1084 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_1085 PF01627 Hpt domain YPD4_1085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_1085 PF16359 RcsD-ABL domain YPD4_1086 PF07690 Major Facilitator Superfamily YPD4_1087 PF00267 Gram-negative porin YPD4_1089 PF00144 Beta-lactamase YPD4_1091 PF12706 Beta-lactamase superfamily domain YPD4_1092 PF02743 Cache domain YPD4_1092 PF00672 HAMP domain YPD4_1092 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPD4_1093 PF01278 Omptin family YPD4_1094 PF00717 Peptidase S24-like YPD4_1094 PF01381 Helix-turn-helix YPD4_1095 PF06530 Phage antitermination protein Q YPD4_1096 PF07005 Sugar-binding N-terminal domain YPD4_1096 PF17042 Nucleotide-binding C-terminal domain YPD4_1097 PF00596 Class II Aldolase and Adducin N-terminal domain YPD4_1098 PF00455 DeoR C terminal sensor domain YPD4_1098 PF08220 DeoR-like helix-turn-helix domain YPD4_1099 PF01261 Xylose isomerase-like TIM barrel YPD4_1101 PF04984 Phage tail sheath protein subtilisin-like domain YPD4_1101 PF17482 Phage tail sheath C-terminal domain YPD4_1108 PF04865 Baseplate J-like protein YPD4_1110 PF07484 Phage Tail Collar Domain YPD4_1111 PF01380 SIS domain YPD4_1111 PF01418 Helix-turn-helix domain, rpiR family YPD4_1112 PF00232 Glycosyl hydrolase family 1 YPD4_1115 PF05638 Type VI secretion system effector, Hcp YPD4_1117 PF00884 Sulfatase YPD4_1117 PF11893 Domain of unknown function (DUF3413) YPD4_1118 PF04245 37-kD nucleoid-associated bacterial protein YPD4_1119 PF01797 Transposase IS200 like YPD4_1120 PF04851 Type III restriction enzyme, res subunit YPD4_1120 PF00271 Helicase conserved C-terminal domain YPD4_1121 PF00849 RNA pseudouridylate synthase YPD4_1121 PF01479 S4 domain YPD4_1122 PF07690 Major Facilitator Superfamily YPD4_1123 PF13989 YejG-like protein YPD4_1124 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPD4_1124 PF00005 ABC transporter YPD4_1125 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_1125 PF12911 N-terminal TM domain of oligopeptide transport permease C YPD4_1126 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_1127 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPD4_1128 PF00563 EAL domain YPD4_1128 PF12792 CSS motif domain associated with EAL YPD4_1129 PF00877 NlpC/P60 family YPD4_1130 PF01569 PAP2 superfamily YPD4_1131 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPD4_1131 PF07683 Cobalamin synthesis protein cobW C-terminal domain YPD4_1132 PF07729 FCD domain YPD4_1132 PF00392 Bacterial regulatory proteins, gntR family YPD4_1133 PF08125 Mannitol dehydrogenase C-terminal domain YPD4_1133 PF01232 Mannitol dehydrogenase Rossmann domain YPD4_1134 PF03786 D-mannonate dehydratase (UxuA) YPD4_1135 PF01132 Elongation factor P (EF-P) OB domain YPD4_1135 PF08207 Elongation factor P (EF-P) KOW-like domain YPD4_1135 PF09285 Elongation factor P, C-terminal YPD4_1136 PF03222 Tryptophan/tyrosine permease family YPD4_1138 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPD4_1138 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPD4_1138 PF01842 ACT domain YPD4_1140 PF00171 Aldehyde dehydrogenase family YPD4_1141 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPD4_1141 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD4_1142 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPD4_1144 PF00005 ABC transporter YPD4_1145 PF02653 Branched-chain amino acid transport system / permease component YPD4_1146 PF00293 NUDIX domain YPD4_1147 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPD4_1147 PF00381 PTS HPr component phosphorylation site YPD4_1148 PF00294 pfkB family carbohydrate kinase YPD4_1149 PF02378 Phosphotransferase system, EIIC YPD4_1149 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPD4_1150 PF00486 Transcriptional regulatory protein, C terminal YPD4_1151 PF17550 Family of unknown function YPD4_1153 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD4_1153 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD4_1154 PF00577 Outer membrane usher protein YPD4_1154 PF13954 PapC N-terminal domain YPD4_1154 PF13953 PapC C-terminal domain YPD4_1155 PF01261 Xylose isomerase-like TIM barrel YPD4_1156 PF03601 Conserved hypothetical protein 698 YPD4_1157 PF03601 Conserved hypothetical protein 698 YPD4_1158 PF03466 LysR substrate binding domain YPD4_1158 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_1159 PF00324 Amino acid permease YPD4_1161 PF01032 FecCD transport family YPD4_1162 PF00005 ABC transporter YPD4_1163 PF07715 TonB-dependent Receptor Plug Domain YPD4_1163 PF00593 TonB dependent receptor YPD4_1164 PF13417 Glutathione S-transferase, N-terminal domain YPD4_1164 PF00043 Glutathione S-transferase, C-terminal domain YPD4_1167 PF03180 NLPA lipoprotein YPD4_1168 PF09383 NIL domain YPD4_1168 PF00005 ABC transporter YPD4_1169 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_1170 PF07943 Penicillin-binding protein 5, C-terminal domain YPD4_1170 PF00768 D-alanyl-D-alanine carboxypeptidase YPD4_1172 PF00455 DeoR C terminal sensor domain YPD4_1172 PF08220 DeoR-like helix-turn-helix domain YPD4_1173 PF01791 DeoC/LacD family aldolase YPD4_1174 PF01569 PAP2 superfamily YPD4_1176 PF02080 TrkA-C domain YPD4_1176 PF06826 Predicted Permease Membrane Region YPD4_1177 PF10722 Putative bacterial sensory transduction regulator YPD4_1178 PF13416 Bacterial extracellular solute-binding protein YPD4_1179 PF00005 ABC transporter YPD4_1179 PF08402 TOBE domain YPD4_1180 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_1181 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_1182 PF10767 Protein of unknown function (DUF2593) YPD4_1183 PF05958 tRNA (Uracil-5-)-methyltransferase YPD4_1184 PF05958 tRNA (Uracil-5-)-methyltransferase YPD4_1185 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD4_1188 PF01032 FecCD transport family YPD4_1189 PF01032 FecCD transport family YPD4_1190 PF00005 ABC transporter YPD4_1191 PF03059 Nicotianamine synthase protein YPD4_1192 PF10100 Staphylopine dehydrogenase YPD4_1193 PF00892 EamA-like transporter family YPD4_1194 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_1195 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_1196 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD4_1197 PF00005 ABC transporter YPD4_1198 PF01817 Chorismate mutase type II YPD4_1199 PF12883 Protein of unknown function (DUF3828) YPD4_1200 PF01370 NAD dependent epimerase/dehydratase family YPD4_1201 PF11066 Protein of unknown function (DUF2867) YPD4_1201 PF13460 NAD(P)H-binding YPD4_1202 PF01212 Beta-eliminating lyase YPD4_1203 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPD4_1203 PF00205 Thiamine pyrophosphate enzyme, central domain YPD4_1203 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPD4_1204 PF00175 Oxidoreductase NAD-binding domain YPD4_1204 PF00111 2Fe-2S iron-sulfur cluster binding domain YPD4_1204 PF00970 Oxidoreductase FAD-binding domain YPD4_1205 PF03063 Prismane/CO dehydrogenase family YPD4_1206 PF03956 Lysine exporter LysO YPD4_1207 PF11398 Protein of unknown function (DUF2813) YPD4_1208 PF04393 Protein of unknown function (DUF535) YPD4_1209 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD4_1210 PF02687 FtsX-like permease family YPD4_1210 PF12704 MacB-like periplasmic core domain YPD4_1210 PF00005 ABC transporter YPD4_1211 PF02617 ATP-dependent Clp protease adaptor protein ClpS YPD4_1212 PF00004 ATPase family associated with various cellular activities (AAA) YPD4_1212 PF07724 AAA domain (Cdc48 subfamily) YPD4_1212 PF17871 AAA lid domain YPD4_1212 PF02861 Clp amino terminal domain, pathogenicity island component YPD4_1212 PF10431 C-terminal, D2-small domain, of ClpB protein YPD4_1214 PF03588 Leucyl/phenylalanyl-tRNA protein transferase YPD4_1215 PF00664 ABC transporter transmembrane region YPD4_1215 PF00005 ABC transporter YPD4_1216 PF00005 ABC transporter YPD4_1216 PF00664 ABC transporter transmembrane region YPD4_1217 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD4_1218 PF01037 Lrp/AsnC ligand binding domain YPD4_1219 PF13491 4TM region of DNA translocase FtsK/SpoIIIE YPD4_1219 PF01580 FtsK/SpoIIIE family YPD4_1219 PF09397 Ftsk gamma domain YPD4_1219 PF17854 FtsK alpha domain YPD4_1220 PF03548 Outer membrane lipoprotein carrier protein LolA YPD4_1221 PF12002 MgsA AAA+ ATPase C terminal YPD4_1221 PF00004 ATPase family associated with various cellular activities (AAA) YPD4_1221 PF16193 AAA C-terminal domain YPD4_1222 PF02403 Seryl-tRNA synthetase N-terminal domain YPD4_1222 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPD4_1223 PF07690 Major Facilitator Superfamily YPD4_1224 PF04055 Radical SAM superfamily YPD4_1226 PF01228 Glycine radical YPD4_1226 PF02901 Pyruvate formate lyase-like YPD4_1227 PF01228 Glycine radical YPD4_1227 PF02901 Pyruvate formate lyase-like YPD4_1228 PF01226 Formate/nitrite transporter YPD4_1229 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding YPD4_1229 PF18381 YcaO cyclodehydratase C-terminal domain YPD4_1230 PF00710 Asparaginase, N-terminal YPD4_1230 PF17763 Glutaminase/Asparaginase C-terminal domain YPD4_1231 PF05658 Head domain of trimeric autotransporter adhesin YPD4_1231 PF05662 Coiled stalk of trimeric autotransporter adhesin YPD4_1231 PF13018 Extended Signal Peptide of Type V secretion system YPD4_1231 PF03895 YadA-like membrane anchor domain YPD4_1231 PF13018 Extended Signal Peptide of Type V secretion system YPD4_1231 PF05662 Coiled stalk of trimeric autotransporter adhesin YPD4_1231 PF05658 Head domain of trimeric autotransporter adhesin YPD4_1231 PF03895 YadA-like membrane anchor domain YPD4_1233 PF00266 Aminotransferase class-V YPD4_1234 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPD4_1235 PF02224 Cytidylate kinase YPD4_1236 PF00575 S1 RNA binding domain YPD4_1237 PF00753 Metallo-beta-lactamase superfamily YPD4_1237 PF03772 Competence protein YPD4_1238 PF00005 ABC transporter YPD4_1238 PF00664 ABC transporter transmembrane region YPD4_1239 PF02606 Tetraacyldisaccharide-1-P 4'-kinase YPD4_1240 PF07063 Domain of unknown function (DUF1338) YPD4_1241 PF02348 Cytidylyltransferase YPD4_1242 PF01636 Phosphotransferase enzyme family YPD4_1244 PF17192 MukF middle domain YPD4_1244 PF17193 MukF C-terminal domain YPD4_1244 PF03882 MukF winged-helix domain YPD4_1245 PF04288 MukE-like family YPD4_1246 PF04310 MukB N-terminal YPD4_1246 PF16330 MukB hinge domain YPD4_1248 PF03734 L,D-transpeptidase catalytic domain YPD4_1248 PF01471 Putative peptidoglycan binding domain YPD4_1249 PF01471 Putative peptidoglycan binding domain YPD4_1249 PF03734 L,D-transpeptidase catalytic domain YPD4_1250 PF05951 Bacterial protein of unknown function (DUF882) YPD4_1251 PF00753 Metallo-beta-lactamase superfamily YPD4_1252 PF00155 Aminotransferase class I and II YPD4_1253 PF00267 Gram-negative porin YPD4_1254 PF01336 OB-fold nucleic acid binding domain YPD4_1254 PF00152 tRNA synthetases class II (D, K and N) YPD4_1255 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain YPD4_1255 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family YPD4_1256 PF01433 Peptidase family M1 domain YPD4_1256 PF11940 Domain of unknown function (DUF3458) Ig-like fold YPD4_1256 PF17432 Domain of unknown function (DUF3458_C) ARM repeats YPD4_1257 PF01433 Peptidase family M1 domain YPD4_1257 PF11940 Domain of unknown function (DUF3458) Ig-like fold YPD4_1257 PF17432 Domain of unknown function (DUF3458_C) ARM repeats YPD4_1258 PF01180 Dihydroorotate dehydrogenase YPD4_1259 PF07126 Cell-division protein ZapC YPD4_1260 PF03473 MOSC domain YPD4_1260 PF00111 2Fe-2S iron-sulfur cluster binding domain YPD4_1260 PF03476 MOSC N-terminal beta barrel domain YPD4_1261 PF02926 THUMP domain YPD4_1261 PF01170 Putative RNA methylase family UPF0020 YPD4_1261 PF10672 S-adenosylmethionine-dependent methyltransferase YPD4_1262 PF12848 ABC transporter YPD4_1262 PF00005 ABC transporter YPD4_1262 PF16326 ABC transporter C-terminal domain YPD4_1263 PF04403 Paraquat-inducible protein A YPD4_1264 PF02470 MlaD protein YPD4_1265 PF03886 ABC-type transport auxiliary lipoprotein component YPD4_1266 PF01797 Transposase IS200 like YPD4_1267 PF00109 Beta-ketoacyl synthase, N-terminal domain YPD4_1267 PF02801 Beta-ketoacyl synthase, C-terminal domain YPD4_1268 PF01695 IstB-like ATP binding protein YPD4_1269 PF02796 Helix-turn-helix domain of resolvase YPD4_1269 PF00665 Integrase core domain YPD4_1270 PF02801 Beta-ketoacyl synthase, C-terminal domain YPD4_1270 PF00109 Beta-ketoacyl synthase, N-terminal domain YPD4_1271 PF07977 FabA-like domain YPD4_1272 PF13654 AAA domain YPD4_1272 PF05362 Lon protease (S16) C-terminal proteolytic domain YPD4_1273 PF06303 MatP N-terminal domain YPD4_1273 PF17414 MatP C-terminal ribbon-helix-helix domain YPD4_1274 PF01797 Transposase IS200 like YPD4_1275 PF00691 OmpA family YPD4_1275 PF01389 OmpA-like transmembrane domain YPD4_1276 PF03846 Cell division inhibitor SulA YPD4_1277 PF04994 TfoX C-terminal domain YPD4_1277 PF04993 TfoX N-terminal domain YPD4_1278 PF12805 FUSC-like inner membrane protein yccS YPD4_1279 PF03733 Inner membrane component domain YPD4_1280 PF13361 UvrD-like helicase C-terminal domain YPD4_1280 PF12462 DNA helicase IV / RNA helicase N terminal YPD4_1280 PF00580 UvrD/REP helicase N-terminal domain YPD4_1281 PF02142 MGS-like domain YPD4_1282 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) YPD4_1283 PF13380 CoA binding domain YPD4_1284 PF08755 Hemimethylated DNA-binding protein YccV like YPD4_1285 PF10672 S-adenosylmethionine-dependent methyltransferase YPD4_1285 PF17785 PUA-like domain YPD4_1286 PF04358 DsrC like protein YPD4_1289 PF01565 FAD binding domain YPD4_1289 PF08031 Berberine and berberine like YPD4_1291 PF07977 FabA-like domain YPD4_1292 PF00109 Beta-ketoacyl synthase, N-terminal domain YPD4_1292 PF02801 Beta-ketoacyl synthase, C-terminal domain YPD4_1294 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal YPD4_1294 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal YPD4_1296 PF00378 Enoyl-CoA hydratase/isomerase YPD4_1299 PF00698 Acyl transferase domain YPD4_1304 PF00691 OmpA family YPD4_1304 PF05736 OprF membrane domain YPD4_1306 PF07724 AAA domain (Cdc48 subfamily) YPD4_1306 PF17871 AAA lid domain YPD4_1306 PF10431 C-terminal, D2-small domain, of ClpB protein YPD4_1306 PF00004 ATPase family associated with various cellular activities (AAA) YPD4_1313 PF13592 Winged helix-turn helix YPD4_1313 PF13358 DDE superfamily endonuclease YPD4_1325 PF00005 ABC transporter YPD4_1325 PF12848 ABC transporter YPD4_1327 PF00872 Transposase, Mutator family YPD4_1328 PF00899 ThiF family YPD4_1329 PF00994 Probable molybdopterin binding domain YPD4_1329 PF03454 MoeA C-terminal region (domain IV) YPD4_1329 PF03453 MoeA N-terminal region (domain I and II) YPD4_1331 PF00005 ABC transporter YPD4_1332 PF13533 Biotin-lipoyl like YPD4_1334 PF00756 Putative esterase YPD4_1335 PF00107 Zinc-binding dehydrogenase YPD4_1335 PF08240 Alcohol dehydrogenase GroES-like domain YPD4_1336 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_1336 PF03466 LysR substrate binding domain YPD4_1337 PF06779 Uncharacterised MFS-type transporter YbfB YPD4_1338 PF01227 GTP cyclohydrolase I YPD4_1339 PF04235 Protein of unknown function (DUF418) YPD4_1340 PF13407 Periplasmic binding protein domain YPD4_1341 PF00005 ABC transporter YPD4_1342 PF02653 Branched-chain amino acid transport system / permease component YPD4_1343 PF02698 DUF218 domain YPD4_1344 PF03949 Malic enzyme, NAD binding domain YPD4_1344 PF00390 Malic enzyme, N-terminal domain YPD4_1345 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region YPD4_1345 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPD4_1346 PF04172 LrgB-like family YPD4_1347 PF03788 LrgA family YPD4_1348 PF07690 Major Facilitator Superfamily YPD4_1352 PF01797 Transposase IS200 like YPD4_1353 PF01588 Putative tRNA binding domain YPD4_1353 PF09334 tRNA synthetases class I (M) YPD4_1354 PF10609 NUBPL iron-transfer P-loop NTPase YPD4_1355 PF00485 Phosphoribulokinase / Uridine kinase family YPD4_1356 PF00692 dUTPase YPD4_1357 PF05170 AsmA family YPD4_1358 PF00571 CBS domain YPD4_1358 PF03471 Transporter associated domain YPD4_1358 PF03741 Integral membrane protein TerC family YPD4_1359 PF11575 FhuF 2Fe-2S C-terminal domain YPD4_1359 PF06276 Ferric iron reductase FhuF-like transporter YPD4_1360 PF00282 Pyridoxal-dependent decarboxylase conserved domain YPD4_1361 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPD4_1363 PF04183 IucA / IucC family YPD4_1363 PF06276 Ferric iron reductase FhuF-like transporter YPD4_1364 PF00005 ABC transporter YPD4_1365 PF01032 FecCD transport family YPD4_1366 PF01032 FecCD transport family YPD4_1367 PF01497 Periplasmic binding protein YPD4_1368 PF00593 TonB dependent receptor YPD4_1368 PF07660 Secretin and TonB N terminus short domain YPD4_1368 PF07715 TonB-dependent Receptor Plug Domain YPD4_1369 PF04183 IucA / IucC family YPD4_1369 PF06276 Ferric iron reductase FhuF-like transporter YPD4_1370 PF00483 Nucleotidyl transferase YPD4_1371 PF00483 Nucleotidyl transferase YPD4_1372 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPD4_1372 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain YPD4_1373 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase YPD4_1373 PF01502 Phosphoribosyl-AMP cyclohydrolase YPD4_1374 PF00977 Histidine biosynthesis protein YPD4_1375 PF00977 Histidine biosynthesis protein YPD4_1376 PF00117 Glutamine amidotransferase class-I YPD4_1377 PF00475 Imidazoleglycerol-phosphate dehydratase YPD4_1378 PF00155 Aminotransferase class I and II YPD4_1379 PF00815 Histidinol dehydrogenase YPD4_1380 PF01634 ATP phosphoribosyltransferase YPD4_1380 PF08029 HisG, C-terminal domain YPD4_1381 PF01370 NAD dependent epimerase/dehydratase family YPD4_1383 PF02653 Branched-chain amino acid transport system / permease component YPD4_1384 PF00005 ABC transporter YPD4_1385 PF00005 ABC transporter YPD4_1386 PF00465 Iron-containing alcohol dehydrogenase YPD4_1387 PF13520 Amino acid permease YPD4_1388 PF08411 Exonuclease C-terminal YPD4_1388 PF00929 Exonuclease YPD4_1390 PF00872 Transposase, Mutator family YPD4_1391 PF11924 Inverse autotransporter, beta-domain YPD4_1391 PF02369 Bacterial Ig-like domain (group 1) YPD4_1391 PF09134 Invasin, domain 3 YPD4_1392 PF07690 Major Facilitator Superfamily YPD4_1393 PF04134 Protein of unknown function, DUF393 YPD4_1395 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPD4_1396 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPD4_1396 PF13378 Enolase C-terminal domain-like YPD4_1397 PF01070 FMN-dependent dehydrogenase YPD4_1398 PF00764 Arginosuccinate synthase YPD4_1399 PF01554 MatE YPD4_1401 PF01522 Polysaccharide deacetylase YPD4_1403 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) YPD4_1404 PF00196 Bacterial regulatory proteins, luxR family YPD4_1404 PF00072 Response regulator receiver domain YPD4_1405 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component YPD4_1407 PF03480 Bacterial extracellular solute-binding protein, family 7 YPD4_1408 PF17837 4'-phosphopantetheinyl transferase N-terminal domain YPD4_1408 PF01648 4'-phosphopantetheinyl transferase superfamily YPD4_1409 PF16875 Glycosyl hydrolase family 36 N-terminal domain YPD4_1409 PF16874 Glycosyl hydrolase family 36 C-terminal domain YPD4_1410 PF01306 LacY proton/sugar symporter YPD4_1411 PF00872 Transposase, Mutator family YPD4_1412 PF13419 Haloacid dehalogenase-like hydrolase YPD4_1413 PF14002 YniB-like protein YPD4_1415 PF00950 ABC 3 transport family YPD4_1416 PF00950 ABC 3 transport family YPD4_1417 PF00005 ABC transporter YPD4_1418 PF01297 Zinc-uptake complex component A periplasmic YPD4_1419 PF01464 Transglycosylase SLT domain YPD4_1420 PF01914 MarC family integral membrane protein YPD4_1421 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPD4_1421 PF02824 TGS domain YPD4_1421 PF03129 Anticodon binding domain YPD4_1421 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPD4_1422 PF05198 Translation initiation factor IF-3, N-terminal domain YPD4_1422 PF00707 Translation initiation factor IF-3, C-terminal domain YPD4_1423 PF00453 Ribosomal protein L20 YPD4_1424 PF01409 tRNA synthetases class II core domain (F) YPD4_1424 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain YPD4_1425 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain YPD4_1425 PF03483 B3/4 domain YPD4_1425 PF01588 Putative tRNA binding domain YPD4_1425 PF03147 Ferredoxin-fold anticodon binding domain YPD4_1425 PF03484 tRNA synthetase B5 domain YPD4_1427 PF01032 FecCD transport family YPD4_1428 PF00255 Glutathione peroxidase YPD4_1429 PF00005 ABC transporter YPD4_1430 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPD4_1431 PF00535 Glycosyl transferase family 2 YPD4_1432 PF02911 Formyl transferase, C-terminal domain YPD4_1432 PF00551 Formyl transferase YPD4_1432 PF01370 NAD dependent epimerase/dehydratase family YPD4_1433 PF01522 Polysaccharide deacetylase YPD4_1434 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase YPD4_1435 PF00892 EamA-like transporter family YPD4_1437 PF00877 NlpC/P60 family YPD4_1438 PF03099 Biotin/lipoate A/B protein ligase family YPD4_1438 PF10437 Bacterial lipoate protein ligase C-terminus YPD4_1439 PF02696 Uncharacterized ACR, YdiU/UPF0061 family YPD4_1440 PF02696 Uncharacterized ACR, YdiU/UPF0061 family YPD4_1441 PF00793 DAHP synthetase I family YPD4_1442 PF03618 Kinase/pyrophosphorylase YPD4_1443 PF02896 PEP-utilising enzyme, TIM barrel domain YPD4_1443 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain YPD4_1443 PF00391 PEP-utilising enzyme, mobile domain YPD4_1444 PF01594 AI-2E family transporter YPD4_1445 PF01565 FAD binding domain YPD4_1445 PF13183 4Fe-4S dicluster domain YPD4_1445 PF02913 FAD linked oxidases, C-terminal domain YPD4_1446 PF03061 Thioesterase superfamily YPD4_1447 PF01521 Iron-sulphur cluster biosynthesis YPD4_1448 PF01458 Uncharacterized protein family (UPF0051) YPD4_1449 PF00005 ABC transporter YPD4_1450 PF01458 Uncharacterized protein family (UPF0051) YPD4_1451 PF00266 Aminotransferase class-V YPD4_1452 PF02657 Fe-S metabolism associated domain YPD4_1453 PF03734 L,D-transpeptidase catalytic domain YPD4_1453 PF01476 LysM domain YPD4_1453 PF17969 L,D-transpeptidase C-terminal domain YPD4_1454 PF01695 IstB-like ATP binding protein YPD4_1455 PF02796 Helix-turn-helix domain of resolvase YPD4_1455 PF00665 Integrase core domain YPD4_1457 PF00224 Pyruvate kinase, barrel domain YPD4_1457 PF02887 Pyruvate kinase, alpha/beta domain YPD4_1458 PF01554 MatE YPD4_1459 PF01554 MatE YPD4_1460 PF00677 Lumazine binding domain YPD4_1462 PF07690 Major Facilitator Superfamily YPD4_1463 PF03466 LysR substrate binding domain YPD4_1463 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_1464 PF00356 Bacterial regulatory proteins, lacI family YPD4_1465 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPD4_1465 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPD4_1466 PF00877 NlpC/P60 family YPD4_1467 PF00462 Glutaredoxin YPD4_1468 PF00929 Exonuclease YPD4_1469 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPD4_1470 PF18807 Tripartite Tc toxins repeat YPD4_1470 PF14431 YwqJ-like deaminase YPD4_1471 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPD4_1472 PF00440 Bacterial regulatory proteins, tetR family YPD4_1472 PF16925 Tetracyclin repressor-like, C-terminal domain YPD4_1473 PF08019 Phosphoethanolamine transferase EptA/EptB YPD4_1473 PF00884 Sulfatase YPD4_1474 PF00248 Aldo/keto reductase family YPD4_1475 PF01047 MarR family YPD4_1476 PF05433 Glycine zipper 2TM domain YPD4_1477 PF03702 Anhydro-N-acetylmuramic acid kinase YPD4_1478 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme YPD4_1479 PF01243 Pyridoxamine 5'-phosphate oxidase YPD4_1479 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region YPD4_1480 PF01479 S4 domain YPD4_1480 PF00579 tRNA synthetases class I (W and Y) YPD4_1481 PF08543 Phosphomethylpyrimidine kinase YPD4_1482 PF00043 Glutathione S-transferase, C-terminal domain YPD4_1482 PF02798 Glutathione S-transferase, N-terminal domain YPD4_1483 PF04893 Yip1 domain YPD4_1484 PF00854 POT family YPD4_1486 PF00005 ABC transporter YPD4_1487 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPD4_1487 PF00005 ABC transporter YPD4_1488 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_1488 PF12911 N-terminal TM domain of oligopeptide transport permease C YPD4_1489 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_1490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPD4_1492 PF02954 Bacterial regulatory protein, Fis family YPD4_1492 PF00158 Sigma-54 interaction domain YPD4_1493 PF04012 PspA/IM30 family YPD4_1494 PF04024 PspC domain YPD4_1495 PF04317 YcjX-like family, DUF463 YPD4_1496 PF04317 YcjX-like family, DUF463 YPD4_1497 PF05128 Domain of unknown function (DUF697) YPD4_1500 PF00158 Sigma-54 interaction domain YPD4_1500 PF18024 Helix-turn-helix domain YPD4_1501 PF01797 Transposase IS200 like YPD4_1502 PF08534 Redoxin YPD4_1503 PF01695 IstB-like ATP binding protein YPD4_1504 PF00665 Integrase core domain YPD4_1504 PF02796 Helix-turn-helix domain of resolvase YPD4_1507 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD4_1507 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD4_1510 PF02470 MlaD protein YPD4_1511 PF04403 Paraquat-inducible protein A YPD4_1512 PF13185 GAF domain YPD4_1513 PF17516 ProQ C-terminal domain YPD4_1513 PF04352 ProQ/FINO family YPD4_1514 PF17804 Tail specific protease N-terminal domain YPD4_1514 PF11818 C-terminal domain of tail specific protease (DUF3340) YPD4_1514 PF03572 Peptidase family S41 YPD4_1514 PF00595 PDZ domain YPD4_1515 PF01435 Peptidase family M48 YPD4_1516 PF00419 Fimbrial protein YPD4_1517 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD4_1517 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD4_1518 PF00577 Outer membrane usher protein YPD4_1518 PF13954 PapC N-terminal domain YPD4_1518 PF13953 PapC C-terminal domain YPD4_1520 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD4_1520 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD4_1521 PF07690 Major Facilitator Superfamily YPD4_1522 PF07690 Major Facilitator Superfamily YPD4_1523 PF14583 Oligogalacturonate lyase YPD4_1524 PF09339 IclR helix-turn-helix domain YPD4_1524 PF01614 Bacterial transcriptional regulator YPD4_1525 PF01510 N-acetylmuramoyl-L-alanine amidase YPD4_1527 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPD4_1528 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPD4_1529 PF01547 Bacterial extracellular solute-binding protein YPD4_1530 PF00005 ABC transporter YPD4_1530 PF17912 MalK OB fold domain YPD4_1530 PF03459 TOBE domain YPD4_1531 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_1532 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_1533 PF06917 Periplasmic pectate lyase YPD4_1535 PF04962 KduI/IolB family YPD4_1536 PF07883 Cupin domain YPD4_1537 PF00872 Transposase, Mutator family YPD4_1538 PF00356 Bacterial regulatory proteins, lacI family YPD4_1538 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPD4_1539 PF00665 Integrase core domain YPD4_1539 PF02796 Helix-turn-helix domain of resolvase YPD4_1540 PF01695 IstB-like ATP binding protein YPD4_1541 PF06167 Glucose-regulated metallo-peptidase M90 YPD4_1543 PF00664 ABC transporter transmembrane region YPD4_1543 PF00005 ABC transporter YPD4_1544 PF12833 Helix-turn-helix domain YPD4_1545 PF00324 Amino acid permease YPD4_1546 PF00324 Amino acid permease YPD4_1547 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP YPD4_1549 PF13847 Methyltransferase domain YPD4_1550 PF08447 PAS fold YPD4_1550 PF00990 Diguanylate cyclase, GGDEF domain YPD4_1550 PF00563 EAL domain YPD4_1550 PF13426 PAS domain YPD4_1550 PF05231 MASE1 YPD4_1550 PF08448 PAS fold YPD4_1551 PF00593 TonB dependent receptor YPD4_1551 PF07715 TonB-dependent Receptor Plug Domain YPD4_1552 PF02659 Putative manganese efflux pump YPD4_1553 PF06173 Protein of unknown function (DUF986) YPD4_1554 PF03613 PTS system mannose/fructose/sorbose family IID component YPD4_1555 PF03609 PTS system sorbose-specific iic component YPD4_1556 PF03610 PTS system fructose IIA component YPD4_1556 PF03830 PTS system sorbose subfamily IIB component YPD4_1557 PF03471 Transporter associated domain YPD4_1557 PF03741 Integral membrane protein TerC family YPD4_1558 PF01047 MarR family YPD4_1559 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPD4_1560 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPD4_1561 PF00171 Aldehyde dehydrogenase family YPD4_1562 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPD4_1563 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase YPD4_1564 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPD4_1565 PF03328 HpcH/HpaI aldolase/citrate lyase family YPD4_1566 PF07690 Major Facilitator Superfamily YPD4_1567 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal YPD4_1567 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal YPD4_1568 PF01613 Flavin reductase like domain YPD4_1569 PF03313 Serine dehydratase alpha chain YPD4_1569 PF03315 Serine dehydratase beta chain YPD4_1570 PF00293 NUDIX domain YPD4_1571 PF00425 chorismate binding enzyme YPD4_1571 PF04715 Anthranilate synthase component I, N terminal region YPD4_1572 PF02222 ATP-grasp domain YPD4_1573 PF00271 Helicase conserved C-terminal domain YPD4_1573 PF03880 DbpA RNA binding domain YPD4_1573 PF00270 DEAD/DEAH box helicase YPD4_1574 PF07130 YebG protein YPD4_1576 PF13995 YebF-like protein YPD4_1577 PF00326 Prolyl oligopeptidase family YPD4_1577 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain YPD4_1578 PF00561 alpha/beta hydrolase fold YPD4_1579 PF00210 Ferritin-like domain YPD4_1580 PF04234 CopC domain YPD4_1582 PF10709 Protein of unknown function (DUF2511) YPD4_1585 PF01312 FlhB HrpN YscU SpaS Family YPD4_1586 PF00771 FHIPEP family YPD4_1587 PF06366 Flagellar protein FlhE YPD4_1588 PF07979 Intimin C-type lectin domain YPD4_1588 PF09134 Invasin, domain 3 YPD4_1588 PF02369 Bacterial Ig-like domain (group 1) YPD4_1588 PF11924 Inverse autotransporter, beta-domain YPD4_1590 PF11924 Inverse autotransporter, beta-domain YPD4_1590 PF02369 Bacterial Ig-like domain (group 1) YPD4_1590 PF09134 Invasin, domain 3 YPD4_1590 PF07979 Intimin C-type lectin domain YPD4_1591 PF05130 FlgN protein YPD4_1592 PF04316 Anti-sigma-28 factor, FlgM YPD4_1593 PF13144 Chaperone for flagella basal body P-ring formation YPD4_1593 PF17656 FlgA N-terminal domain YPD4_1594 PF00460 Flagella basal body rod protein YPD4_1595 PF00460 Flagella basal body rod protein YPD4_1595 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD4_1596 PF13860 FlgD Ig-like domain YPD4_1596 PF13861 FlgD Tudor-like domain YPD4_1596 PF03963 Flagellar hook capping protein - N-terminal region YPD4_1597 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD4_1597 PF00460 Flagella basal body rod protein YPD4_1597 PF07559 Flagellar basal body protein FlaE YPD4_1598 PF00460 Flagella basal body rod protein YPD4_1598 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD4_1599 PF00460 Flagella basal body rod protein YPD4_1599 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD4_1600 PF02107 Flagellar L-ring protein YPD4_1601 PF02119 Flagellar P-ring protein YPD4_1602 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase YPD4_1602 PF10135 Rod binding protein YPD4_1603 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD4_1603 PF00460 Flagella basal body rod protein YPD4_1604 PF00669 Bacterial flagellin N-terminal helical region YPD4_1605 PF04198 Putative sugar-binding domain YPD4_1606 PF00596 Class II Aldolase and Adducin N-terminal domain YPD4_1607 PF02653 Branched-chain amino acid transport system / permease component YPD4_1608 PF13407 Periplasmic binding protein domain YPD4_1609 PF00005 ABC transporter YPD4_1610 PF02653 Branched-chain amino acid transport system / permease component YPD4_1611 PF00294 pfkB family carbohydrate kinase YPD4_1613 PF01311 Bacterial export proteins, family 1 YPD4_1614 PF00813 FliP family YPD4_1615 PF04347 Flagellar biosynthesis protein, FliO YPD4_1616 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPD4_1616 PF16973 Flagellar motor switch protein FliN N-terminal YPD4_1617 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPD4_1617 PF02154 Flagellar motor switch protein FliM YPD4_1618 PF03748 Flagellar basal body-associated protein FliL YPD4_1619 PF02120 Flagellar hook-length control protein FliK YPD4_1620 PF02050 Flagellar FliJ protein YPD4_1621 PF18269 T3SS EscN ATPase C-terminal domain YPD4_1621 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPD4_1622 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPD4_1622 PF18269 T3SS EscN ATPase C-terminal domain YPD4_1623 PF02108 Flagellar assembly protein FliH YPD4_1624 PF14842 FliG N-terminal domain YPD4_1624 PF01706 FliG C-terminal domain YPD4_1624 PF14841 FliG middle domain YPD4_1625 PF01514 Secretory protein of YscJ/FliF family YPD4_1625 PF08345 Flagellar M-ring protein C-terminal YPD4_1626 PF02049 Flagellar hook-basal body complex protein FliE YPD4_1627 PF00730 HhH-GPD superfamily base excision DNA repair protein YPD4_1628 PF01966 HD domain YPD4_1629 PF02743 Cache domain YPD4_1629 PF00672 HAMP domain YPD4_1629 PF00211 Adenylate and Guanylate cyclase catalytic domain YPD4_1630 PF12833 Helix-turn-helix domain YPD4_1631 PF02561 Flagellar protein FliS YPD4_1632 PF02465 Flagellar hook-associated protein 2 N-terminus YPD4_1632 PF07195 Flagellar hook-associated protein 2 C-terminus YPD4_1632 PF07196 Flagellin hook IN motif YPD4_1633 PF00700 Bacterial flagellin C-terminal helical region YPD4_1633 PF08884 Flagellin D3 domain YPD4_1633 PF00669 Bacterial flagellin N-terminal helical region YPD4_1634 PF04539 Sigma-70 region 3 YPD4_1634 PF04545 Sigma-70, region 4 YPD4_1634 PF04542 Sigma-70 region 2 YPD4_1635 PF02899 Phage integrase, N-terminal SAM-like domain YPD4_1636 PF00291 Pyridoxal-phosphate dependent enzyme YPD4_1641 PF14850 DNA-binding domain of Proline dehydrogenase YPD4_1641 PF01619 Proline dehydrogenase YPD4_1641 PF18327 Proline utilization A proline dehydrogenase N-terminal domain YPD4_1641 PF00171 Aldehyde dehydrogenase family YPD4_1642 PF00474 Sodium:solute symporter family YPD4_1643 PF03239 Iron permease FTR1 family YPD4_1644 PF09375 Imelysin YPD4_1644 PF13473 Cupredoxin-like domain YPD4_1645 PF04261 Dyp-type peroxidase family YPD4_1646 PF03358 NADPH-dependent FMN reductase YPD4_1647 PF01344 Kelch motif YPD4_1648 PF00324 Amino acid permease YPD4_1649 PF13505 Outer membrane protein beta-barrel domain YPD4_1650 PF06942 GlpM protein YPD4_1651 PF00072 Response regulator receiver domain YPD4_1651 PF00196 Bacterial regulatory proteins, luxR family YPD4_1652 PF08459 UvrC Helix-hairpin-helix N-terminal YPD4_1652 PF01541 GIY-YIG catalytic domain YPD4_1652 PF02151 UvrB/uvrC motif YPD4_1653 PF01066 CDP-alcohol phosphatidyltransferase YPD4_1654 PF05638 Type VI secretion system effector, Hcp YPD4_1659 PF00872 Transposase, Mutator family YPD4_1660 PF00872 Transposase, Mutator family YPD4_1664 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPD4_1664 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPD4_1666 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_1667 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_1668 PF08402 TOBE domain YPD4_1668 PF00005 ABC transporter YPD4_1669 PF02796 Helix-turn-helix domain of resolvase YPD4_1669 PF00665 Integrase core domain YPD4_1670 PF01695 IstB-like ATP binding protein YPD4_1673 PF07715 TonB-dependent Receptor Plug Domain YPD4_1673 PF00593 TonB dependent receptor YPD4_1674 PF00501 AMP-binding enzyme YPD4_1674 PF13193 AMP-binding enzyme C-terminal domain YPD4_1675 PF00975 Thioesterase domain YPD4_1677 PF00550 Phosphopantetheine attachment site YPD4_1677 PF02801 Beta-ketoacyl synthase, C-terminal domain YPD4_1677 PF00698 Acyl transferase domain YPD4_1677 PF00668 Condensation domain YPD4_1677 PF00109 Beta-ketoacyl synthase, N-terminal domain YPD4_1677 PF16197 Ketoacyl-synthetase C-terminal extension YPD4_1678 PF00550 Phosphopantetheine attachment site YPD4_1678 PF00501 AMP-binding enzyme YPD4_1678 PF08242 Methyltransferase domain YPD4_1678 PF00668 Condensation domain YPD4_1680 PF08021 Siderophore-interacting FAD-binding domain YPD4_1680 PF00005 ABC transporter YPD4_1680 PF04954 Siderophore-interacting protein YPD4_1680 PF00664 ABC transporter transmembrane region YPD4_1681 PF00664 ABC transporter transmembrane region YPD4_1681 PF00005 ABC transporter YPD4_1682 PF07690 Major Facilitator Superfamily YPD4_1683 PF00425 chorismate binding enzyme YPD4_1684 PF00589 Phage integrase family YPD4_1684 PF13356 Arm DNA-binding domain YPD4_1685 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD4_1685 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD4_1688 PF13954 PapC N-terminal domain YPD4_1688 PF00577 Outer membrane usher protein YPD4_1688 PF13953 PapC C-terminal domain YPD4_1689 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD4_1689 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD4_1691 PF00512 His Kinase A (phospho-acceptor) domain YPD4_1691 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD4_1691 PF00072 Response regulator receiver domain YPD4_1691 PF00989 PAS fold YPD4_1691 PF01627 Hpt domain YPD4_1691 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_1692 PF00072 Response regulator receiver domain YPD4_1692 PF00196 Bacterial regulatory proteins, luxR family YPD4_1693 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain YPD4_1693 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain YPD4_1694 PF01575 MaoC like domain YPD4_1695 PF03328 HpcH/HpaI aldolase/citrate lyase family YPD4_1696 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_1696 PF03466 LysR substrate binding domain YPD4_1700 PF04909 Amidohydrolase YPD4_1702 PF02508 Rnf-Nqr subunit, membrane protein YPD4_1703 PF00155 Aminotransferase class I and II YPD4_1704 PF00324 Amino acid permease YPD4_1705 PF08220 DeoR-like helix-turn-helix domain YPD4_1705 PF00455 DeoR C terminal sensor domain YPD4_1706 PF04960 Glutaminase YPD4_1708 PF03239 Iron permease FTR1 family YPD4_1709 PF10634 Fe2+ transport protein YPD4_1711 PF02687 FtsX-like permease family YPD4_1711 PF00005 ABC transporter YPD4_1711 PF12704 MacB-like periplasmic core domain YPD4_1713 PF12704 MacB-like periplasmic core domain YPD4_1713 PF02687 FtsX-like permease family YPD4_1713 PF00005 ABC transporter YPD4_1714 PF00578 AhpC/TSA family YPD4_1716 PF03848 Tellurite resistance protein TehB YPD4_1716 PF09313 Domain of unknown function (DUF1971) YPD4_1717 PF00557 Metallopeptidase family M24 YPD4_1719 PF14883 Hypothetical glycosyl hydrolase family 13 YPD4_1719 PF01522 Polysaccharide deacetylase YPD4_1720 PF00535 Glycosyl transferase family 2 YPD4_1721 PF13994 PgaD-like protein YPD4_1723 PF02562 PhoH-like protein YPD4_1724 PF01699 Sodium/calcium exchanger protein YPD4_1725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_1725 PF07730 Histidine kinase YPD4_1725 PF00672 HAMP domain YPD4_1725 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term YPD4_1726 PF00392 Bacterial regulatory proteins, gntR family YPD4_1726 PF00155 Aminotransferase class I and II YPD4_1727 PF00202 Aminotransferase class-III YPD4_1728 PF04958 Arginine N-succinyltransferase beta subunit YPD4_1729 PF00171 Aldehyde dehydrogenase family YPD4_1730 PF04996 Succinylarginine dihydrolase YPD4_1731 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family YPD4_1732 PF00267 Gram-negative porin YPD4_1733 PF00665 Integrase core domain YPD4_1733 PF02796 Helix-turn-helix domain of resolvase YPD4_1734 PF01695 IstB-like ATP binding protein YPD4_1736 PF01979 Amidohydrolase family YPD4_1737 PF07702 UTRA domain YPD4_1737 PF00392 Bacterial regulatory proteins, gntR family YPD4_1738 PF01979 Amidohydrolase family YPD4_1739 PF05962 HutD YPD4_1741 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPD4_1741 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPD4_1742 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPD4_1742 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPD4_1743 PF01370 NAD dependent epimerase/dehydratase family YPD4_1752 PF00872 Transposase, Mutator family YPD4_1756 PF08242 Methyltransferase domain YPD4_1764 PF00672 HAMP domain YPD4_1764 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_1764 PF00512 His Kinase A (phospho-acceptor) domain YPD4_1765 PF00486 Transcriptional regulatory protein, C terminal YPD4_1765 PF00072 Response regulator receiver domain YPD4_1766 PF02129 X-Pro dipeptidyl-peptidase (S15 family) YPD4_1774 PF06071 Protein of unknown function (DUF933) YPD4_1774 PF01926 50S ribosome-binding GTPase YPD4_1775 PF01195 Peptidyl-tRNA hydrolase YPD4_1776 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase YPD4_1776 PF14572 Phosphoribosyl synthetase-associated domain YPD4_1777 PF08544 GHMP kinases C terminal YPD4_1777 PF00288 GHMP kinases N terminal domain YPD4_1778 PF03550 Outer membrane lipoprotein LolB YPD4_1779 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain YPD4_1779 PF01488 Shikimate / quinate 5-dehydrogenase YPD4_1779 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain YPD4_1780 PF00472 RF-1 domain YPD4_1780 PF03462 PCRF domain YPD4_1781 PF13847 Methyltransferase domain YPD4_1781 PF17827 PrmC N-terminal domain YPD4_1782 PF04247 Invasion gene expression up-regulator, SirB YPD4_1783 PF13369 Transglutaminase-like superfamily YPD4_1784 PF00793 DAHP synthetase I family YPD4_1785 PF00916 Sulfate permease family YPD4_1785 PF01740 STAS domain YPD4_1786 PF00916 Sulfate permease family YPD4_1786 PF01740 STAS domain YPD4_1787 PF03009 Glycerophosphoryl diester phosphodiesterase family YPD4_1789 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_1790 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_1791 PF00005 ABC transporter YPD4_1791 PF08402 TOBE domain YPD4_1793 PF00005 ABC transporter YPD4_1793 PF08402 TOBE domain YPD4_1794 PF03009 Glycerophosphoryl diester phosphodiesterase family YPD4_1795 PF00480 ROK family YPD4_1795 PF01325 Iron dependent repressor, N-terminal DNA binding domain YPD4_1796 PF02811 PHP domain YPD4_1797 PF02613 Nitrate reductase delta subunit YPD4_1798 PF07273 Protein of unknown function (DUF1439) YPD4_1799 PF07690 Major Facilitator Superfamily YPD4_1800 PF13302 Acetyltransferase (GNAT) domain YPD4_1801 PF04337 Protein of unknown function, DUF480 YPD4_1802 PF03023 Lipid II flippase MurJ YPD4_1804 PF08479 POTRA domain, ShlB-type YPD4_1804 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPD4_1804 PF17287 POTRA domain YPD4_1805 PF13332 Hemagglutinin repeat YPD4_1805 PF05860 haemagglutination activity domain YPD4_1806 PF03485 Arginyl tRNA synthetase N terminal domain YPD4_1806 PF00750 tRNA synthetases class I (R) YPD4_1806 PF05746 DALR anticodon binding domain YPD4_1807 PF06185 YecM protein YPD4_1808 PF03932 CutC family YPD4_1809 PF08003 Protein of unknown function (DUF1698) YPD4_1810 PF13649 Methyltransferase domain YPD4_1811 PF01124 MAPEG family YPD4_1812 PF01904 Protein of unknown function DUF72 YPD4_1813 PF00152 tRNA synthetases class II (D, K and N) YPD4_1813 PF02938 GAD domain YPD4_1813 PF01336 OB-fold nucleic acid binding domain YPD4_1814 PF00293 NUDIX domain YPD4_1815 PF01709 Transcriptional regulator YPD4_1816 PF02075 Crossover junction endodeoxyribonuclease RuvC YPD4_1817 PF07499 RuvA, C-terminal domain YPD4_1817 PF01330 RuvA N terminal domain YPD4_1818 PF05491 RuvB C-terminal winged helix domain YPD4_1818 PF05496 Holliday junction DNA helicase RuvB P-loop domain YPD4_1818 PF17864 RuvB AAA lid domain YPD4_1819 PF00950 ABC 3 transport family YPD4_1820 PF00005 ABC transporter YPD4_1821 PF01297 Zinc-uptake complex component A periplasmic YPD4_1822 PF08525 Opacity-associated protein A N-terminal motif YPD4_1822 PF01551 Peptidase family M23 YPD4_1822 PF01476 LysM domain YPD4_1823 PF03279 Bacterial lipid A biosynthesis acyltransferase YPD4_1824 PF00224 Pyruvate kinase, barrel domain YPD4_1824 PF02887 Pyruvate kinase, alpha/beta domain YPD4_1825 PF01380 SIS domain YPD4_1825 PF01418 Helix-turn-helix domain, rpiR family YPD4_1826 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain YPD4_1826 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain YPD4_1827 PF01081 KDPG and KHG aldolase YPD4_1828 PF00893 Small Multidrug Resistance protein YPD4_1829 PF00893 Small Multidrug Resistance protein YPD4_1830 PF01042 Endoribonuclease L-PSP YPD4_1831 PF04851 Type III restriction enzyme, res subunit YPD4_1831 PF13307 Helicase C-terminal domain YPD4_1832 PF00814 Glycoprotease family YPD4_1833 PF03843 Outer membrane lipoprotein Slp family YPD4_1834 PF13193 AMP-binding enzyme C-terminal domain YPD4_1834 PF00501 AMP-binding enzyme YPD4_1835 PF00570 HRDC domain YPD4_1835 PF01612 3'-5' exonuclease YPD4_1836 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain YPD4_1837 PF05209 Septum formation inhibitor MinC, N-terminal domain YPD4_1837 PF03775 Septum formation inhibitor MinC, C-terminal domain YPD4_1838 PF13406 Transglycosylase SLT domain YPD4_1839 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPD4_1840 PF03692 Putative zinc- or iron-chelating domain YPD4_1841 PF12167 Arm DNA-binding domain YPD4_1841 PF00589 Phage integrase family YPD4_1842 PF00665 Integrase core domain YPD4_1842 PF02796 Helix-turn-helix domain of resolvase YPD4_1843 PF01695 IstB-like ATP binding protein YPD4_1845 PF05772 NinB protein YPD4_1854 PF00872 Transposase, Mutator family YPD4_1877 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YPD4_1878 PF00872 Transposase, Mutator family YPD4_1880 PF00266 Aminotransferase class-V YPD4_1883 PF02600 Disulfide bond formation protein DsbB YPD4_1884 PF06450 Bacterial Na+/H+ antiporter B (NhaB) YPD4_1885 PF07840 FadR C-terminal domain YPD4_1885 PF00392 Bacterial regulatory proteins, gntR family YPD4_1886 PF04293 SpoVR like protein YPD4_1887 PF01266 FAD dependent oxidoreductase YPD4_1888 PF07690 Major Facilitator Superfamily YPD4_1889 PF02678 Pirin YPD4_1889 PF05726 Pirin C-terminal cupin domain YPD4_1890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_1890 PF03466 LysR substrate binding domain YPD4_1892 PF04285 Protein of unknown function (DUF444) YPD4_1893 PF08298 PrkA AAA domain YPD4_1893 PF06798 PrkA serine protein kinase C-terminal domain YPD4_1894 PF06629 MltA-interacting protein MipA YPD4_1895 PF01263 Aldose 1-epimerase YPD4_1896 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPD4_1896 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPD4_1897 PF01641 SelR domain YPD4_1899 PF00857 Isochorismatase family YPD4_1900 PF17763 Glutaminase/Asparaginase C-terminal domain YPD4_1900 PF00710 Asparaginase, N-terminal YPD4_1901 PF01343 Peptidase family S49 YPD4_1902 PF00881 Nitroreductase family YPD4_1903 PF02769 AIR synthase related protein, C-terminal domain YPD4_1903 PF00586 AIR synthase related protein, N-terminal domain YPD4_1904 PF01131 DNA topoisomerase YPD4_1904 PF01751 Toprim domain YPD4_1905 PF00293 NUDIX domain YPD4_1906 PF03372 Endonuclease/Exonuclease/phosphatase family YPD4_1907 PF03466 LysR substrate binding domain YPD4_1907 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_1908 PF00872 Transposase, Mutator family YPD4_1909 PF01842 ACT domain YPD4_1909 PF00551 Formyl transferase YPD4_1910 PF02810 SEC-C motif YPD4_1911 PF00072 Response regulator receiver domain YPD4_1912 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPD4_1912 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPD4_1912 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPD4_1913 PF00816 H-NS histone family YPD4_1914 PF00265 Thymidine kinase YPD4_1915 PF01695 IstB-like ATP binding protein YPD4_1916 PF02796 Helix-turn-helix domain of resolvase YPD4_1916 PF00665 Integrase core domain YPD4_1917 PF00171 Aldehyde dehydrogenase family YPD4_1917 PF00465 Iron-containing alcohol dehydrogenase YPD4_1918 PF00465 Iron-containing alcohol dehydrogenase YPD4_1918 PF00171 Aldehyde dehydrogenase family YPD4_1919 PF01914 MarC family integral membrane protein YPD4_1920 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPD4_1921 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_1922 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_1922 PF12911 N-terminal TM domain of oligopeptide transport permease C YPD4_1923 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPD4_1923 PF00005 ABC transporter YPD4_1924 PF00005 ABC transporter YPD4_1924 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPD4_1925 PF04269 Protein of unknown function, DUF440 YPD4_1926 PF13396 Phospholipase_D-nuclease N-terminal YPD4_1926 PF13091 PLD-like domain YPD4_1927 PF13505 Outer membrane protein beta-barrel domain YPD4_1928 PF03544 Gram-negative bacterial TonB protein C-terminal YPD4_1929 PF00872 Transposase, Mutator family YPD4_1930 PF03061 Thioesterase superfamily YPD4_1931 PF04279 Intracellular septation protein A YPD4_1935 PF03922 OmpW family YPD4_1937 PF00290 Tryptophan synthase alpha chain YPD4_1938 PF00291 Pyridoxal-phosphate dependent enzyme YPD4_1939 PF00218 Indole-3-glycerol phosphate synthase YPD4_1939 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase YPD4_1940 PF02885 Glycosyl transferase family, helical bundle domain YPD4_1940 PF00591 Glycosyl transferase family, a/b domain YPD4_1941 PF00117 Glutamine amidotransferase class-I YPD4_1942 PF04715 Anthranilate synthase component I, N terminal region YPD4_1942 PF00425 chorismate binding enzyme YPD4_1943 PF02811 PHP domain YPD4_1944 PF01300 Telomere recombination YPD4_1945 PF01479 S4 domain YPD4_1945 PF00849 RNA pseudouridylate synthase YPD4_1946 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YPD4_1947 PF00106 short chain dehydrogenase YPD4_1948 PF01343 Peptidase family S49 YPD4_1948 PF08496 Peptidase family S49 N-terminal YPD4_1949 PF08272 Topoisomerase I zinc-ribbon-like YPD4_1949 PF01131 DNA topoisomerase YPD4_1949 PF01751 Toprim domain YPD4_1949 PF01396 Topoisomerase DNA binding C4 zinc finger YPD4_1950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_1950 PF03466 LysR substrate binding domain YPD4_1952 PF00694 Aconitase C-terminal domain YPD4_1952 PF00330 Aconitase family (aconitate hydratase) YPD4_1953 PF00925 GTP cyclohydrolase II YPD4_1954 PF01569 PAP2 superfamily YPD4_1955 PF06305 Lipopolysaccharide assembly protein A domain YPD4_1956 PF18073 Rubredoxin metal binding domain YPD4_1957 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family YPD4_1958 PF01253 Translation initiation factor SUI1 YPD4_1959 PF00596 Class II Aldolase and Adducin N-terminal domain YPD4_1960 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPD4_1961 PF04328 Selenoprotein, putative YPD4_1962 PF13722 5TM C-terminal transporter carbon starvation CstA YPD4_1962 PF02554 Carbon starvation protein CstA YPD4_1963 PF08206 Ribonuclease B OB domain YPD4_1963 PF00575 S1 RNA binding domain YPD4_1963 PF17876 Cold shock domain YPD4_1963 PF00773 RNB domain YPD4_1964 PF07690 Major Facilitator Superfamily YPD4_1965 PF01370 NAD dependent epimerase/dehydratase family YPD4_1966 PF00730 HhH-GPD superfamily base excision DNA repair protein YPD4_1966 PF00633 Helix-hairpin-helix motif YPD4_1966 PF10576 Iron-sulfur binding domain of endonuclease III YPD4_1967 PF02508 Rnf-Nqr subunit, membrane protein YPD4_1968 PF04205 FMN-binding domain YPD4_1969 PF03116 NQR2, RnfD, RnfE family YPD4_1970 PF12833 Helix-turn-helix domain YPD4_1970 PF06445 GyrI-like small molecule binding domain YPD4_1971 PF13375 RnfC Barrel sandwich hybrid domain YPD4_1971 PF10531 SLBB domain YPD4_1971 PF13237 4Fe-4S dicluster domain YPD4_1971 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPD4_1972 PF04060 Putative Fe-S cluster YPD4_1973 PF02508 Rnf-Nqr subunit, membrane protein YPD4_1974 PF10754 Protein of unknown function (DUF2569) YPD4_1975 PF03412 Peptidase C39 family YPD4_1975 PF00005 ABC transporter YPD4_1975 PF00664 ABC transporter transmembrane region YPD4_1976 PF13533 Biotin-lipoyl like YPD4_1978 PF03412 Peptidase C39 family YPD4_1978 PF00664 ABC transporter transmembrane region YPD4_1978 PF00005 ABC transporter YPD4_1979 PF02610 L-arabinose isomerase YPD4_1979 PF11762 L-arabinose isomerase C-terminal domain YPD4_1980 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD4_1981 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPD4_1982 PF00005 ABC transporter YPD4_1983 PF02653 Branched-chain amino acid transport system / permease component YPD4_1984 PF12833 Helix-turn-helix domain YPD4_1984 PF02311 AraC-like ligand binding domain YPD4_1985 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPD4_1985 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPD4_1986 PF13593 SBF-like CPA transporter family (DUF4137) YPD4_1988 PF06097 Bacterial protein of unknown function (DUF945) YPD4_1989 PF01238 Phosphomannose isomerase type I YPD4_1990 PF00206 Lyase YPD4_1990 PF10415 Fumarase C C-terminus YPD4_1991 PF05472 DNA replication terminus site-binding protein (Ter protein) YPD4_1992 PF07690 Major Facilitator Superfamily YPD4_1993 PF03466 LysR substrate binding domain YPD4_1993 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_1994 PF00480 ROK family YPD4_1996 PF00654 Voltage gated chloride channel YPD4_1997 PF00356 Bacterial regulatory proteins, lacI family YPD4_1999 PF13407 Periplasmic binding protein domain YPD4_2000 PF09084 NMT1/THI5 like YPD4_2001 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_2002 PF01048 Phosphorylase superfamily YPD4_2002 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus YPD4_2007 PF00205 Thiamine pyrophosphate enzyme, central domain YPD4_2007 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPD4_2007 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPD4_2008 PF01842 ACT domain YPD4_2009 PF13419 Haloacid dehalogenase-like hydrolase YPD4_2012 PF00245 Alkaline phosphatase YPD4_2013 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPD4_2013 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPD4_2014 PF13545 Crp-like helix-turn-helix domain YPD4_2014 PF00027 Cyclic nucleotide-binding domain YPD4_2015 PF00582 Universal stress protein family YPD4_2016 PF02233 NAD(P) transhydrogenase beta subunit YPD4_2017 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch YPD4_2017 PF05222 Alanine dehydrogenase/PNT, N-terminal domain YPD4_2017 PF01262 Alanine dehydrogenase/PNT, C-terminal domain YPD4_2018 PF07338 Protein of unknown function (DUF1471) YPD4_2019 PF13520 Amino acid permease YPD4_2021 PF00486 Transcriptional regulatory protein, C terminal YPD4_2021 PF00072 Response regulator receiver domain YPD4_2022 PF00512 His Kinase A (phospho-acceptor) domain YPD4_2022 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_2022 PF00672 HAMP domain YPD4_2023 PF02074 Carboxypeptidase Taq (M32) metallopeptidase YPD4_2025 PF18807 Tripartite Tc toxins repeat YPD4_2025 PF14431 YwqJ-like deaminase YPD4_2027 PF04264 YceI-like domain YPD4_2028 PF01292 Prokaryotic cytochrome b561 YPD4_2029 PF00089 Trypsin YPD4_2032 PF04408 Helicase associated domain (HA2) YPD4_2032 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold YPD4_2032 PF11898 Domain of unknown function (DUF3418) YPD4_2032 PF00270 DEAD/DEAH box helicase YPD4_2032 PF00271 Helicase conserved C-terminal domain YPD4_2033 PF02525 Flavodoxin-like fold YPD4_2034 PF04198 Putative sugar-binding domain YPD4_2034 PF00325 Bacterial regulatory proteins, crp family YPD4_2035 PF08125 Mannitol dehydrogenase C-terminal domain YPD4_2035 PF01232 Mannitol dehydrogenase Rossmann domain YPD4_2036 PF07027 Protein of unknown function (DUF1318) YPD4_2037 PF11739 Dicarboxylate transport YPD4_2038 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPD4_2038 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPD4_2039 PF03724 META domain YPD4_2040 PF03891 Domain of unknown function (DUF333) YPD4_2041 PF02308 MgtC family YPD4_2042 PF00893 Small Multidrug Resistance protein YPD4_2043 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPD4_2043 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg YPD4_2043 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase YPD4_2043 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II YPD4_2043 PF10371 Domain of unknown function YPD4_2044 PF01171 PP-loop family YPD4_2045 PF13472 GDSL-like Lipase/Acylhydrolase family YPD4_2045 PF07859 alpha/beta hydrolase fold YPD4_2047 PF01544 CorA-like Mg2+ transporter protein YPD4_2048 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPD4_2049 PF00246 Zinc carboxypeptidase YPD4_2050 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPD4_2050 PF13378 Enolase C-terminal domain-like YPD4_2051 PF00665 Integrase core domain YPD4_2051 PF02796 Helix-turn-helix domain of resolvase YPD4_2052 PF01695 IstB-like ATP binding protein YPD4_2054 PF01168 Alanine racemase, N-terminal domain YPD4_2054 PF00842 Alanine racemase, C-terminal domain YPD4_2056 PF05662 Coiled stalk of trimeric autotransporter adhesin YPD4_2056 PF03895 YadA-like membrane anchor domain YPD4_2056 PF13018 Extended Signal Peptide of Type V secretion system YPD4_2056 PF05658 Head domain of trimeric autotransporter adhesin YPD4_2057 PF05662 Coiled stalk of trimeric autotransporter adhesin YPD4_2057 PF13018 Extended Signal Peptide of Type V secretion system YPD4_2057 PF03895 YadA-like membrane anchor domain YPD4_2057 PF05658 Head domain of trimeric autotransporter adhesin YPD4_2058 PF01510 N-acetylmuramoyl-L-alanine amidase YPD4_2059 PF04344 Chemotaxis phosphatase, CheZ YPD4_2060 PF00072 Response regulator receiver domain YPD4_2061 PF00072 Response regulator receiver domain YPD4_2061 PF01339 CheB methylesterase YPD4_2062 PF03705 CheR methyltransferase, all-alpha domain YPD4_2062 PF01739 CheR methyltransferase, SAM binding domain YPD4_2063 PF00672 HAMP domain YPD4_2063 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPD4_2063 PF02203 Tar ligand binding domain homologue YPD4_2064 PF00672 HAMP domain YPD4_2064 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPD4_2064 PF02203 Tar ligand binding domain homologue YPD4_2067 PF12951 Passenger-associated-transport-repeat YPD4_2068 PF08348 YheO-like PAS domain YPD4_2068 PF13309 HTH domain YPD4_2070 PF01042 Endoribonuclease L-PSP YPD4_2071 PF07690 Major Facilitator Superfamily YPD4_2072 PF01584 CheW-like domain YPD4_2073 PF01584 CheW-like domain YPD4_2073 PF09078 CheY binding YPD4_2073 PF02895 Signal transducing histidine kinase, homodimeric domain YPD4_2073 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_2073 PF01627 Hpt domain YPD4_2075 PF13677 Membrane MotB of proton-channel complex MotA/MotB YPD4_2075 PF00691 OmpA family YPD4_2076 PF01618 MotA/TolQ/ExbB proton channel family YPD4_2077 PF05280 Flagellar transcriptional activator (FlhC) YPD4_2078 PF00689 Cation transporting ATPase, C-terminus YPD4_2078 PF00690 Cation transporter/ATPase, N-terminus YPD4_2079 PF02308 MgtC family YPD4_2080 PF00672 HAMP domain YPD4_2080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPD4_2080 PF02203 Tar ligand binding domain homologue YPD4_2081 PF00672 HAMP domain YPD4_2081 PF02203 Tar ligand binding domain homologue YPD4_2081 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPD4_2082 PF00703 Glycosyl hydrolases family 2 YPD4_2082 PF02837 Glycosyl hydrolases family 2, sugar binding domain YPD4_2082 PF02836 Glycosyl hydrolases family 2, TIM barrel domain YPD4_2082 PF16353 Domain of unknown function(DUF4981) YPD4_2082 PF02929 Beta galactosidase small chain YPD4_2083 PF00107 Zinc-binding dehydrogenase YPD4_2083 PF00698 Acyl transferase domain YPD4_2083 PF16197 Ketoacyl-synthetase C-terminal extension YPD4_2083 PF00109 Beta-ketoacyl synthase, N-terminal domain YPD4_2083 PF02801 Beta-ketoacyl synthase, C-terminal domain YPD4_2083 PF08659 KR domain YPD4_2083 PF00550 Phosphopantetheine attachment site YPD4_2083 PF14765 Polyketide synthase dehydratase YPD4_2083 PF08240 Alcohol dehydrogenase GroES-like domain YPD4_2084 PF10777 Inner membrane protein YlaC YPD4_2085 PF13404 AsnC-type helix-turn-helix domain YPD4_2085 PF01037 Lrp/AsnC ligand binding domain YPD4_2087 PF00328 Histidine phosphatase superfamily (branch 2) YPD4_2088 PF01638 HxlR-like helix-turn-helix YPD4_2089 PF05368 NmrA-like family YPD4_2090 PF08447 PAS fold YPD4_2090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPD4_2091 PF00356 Bacterial regulatory proteins, lacI family YPD4_2091 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPD4_2092 PF00180 Isocitrate/isopropylmalate dehydrogenase YPD4_2093 PF00849 RNA pseudouridylate synthase YPD4_2094 PF00293 NUDIX domain YPD4_2096 PF04356 Protein of unknown function (DUF489) YPD4_2097 PF08328 Adenylosuccinate lyase C-terminal YPD4_2097 PF00206 Lyase YPD4_2099 PF00072 Response regulator receiver domain YPD4_2099 PF00486 Transcriptional regulatory protein, C terminal YPD4_2100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_2100 PF08918 PhoQ Sensor YPD4_2101 PF08007 Cupin superfamily protein YPD4_2102 PF07687 Peptidase dimerisation domain YPD4_2102 PF01546 Peptidase family M20/M25/M40 YPD4_2103 PF02146 Sir2 family YPD4_2104 PF00480 ROK family YPD4_2105 PF02687 FtsX-like permease family YPD4_2105 PF12704 MacB-like periplasmic core domain YPD4_2106 PF00005 ABC transporter YPD4_2107 PF02687 FtsX-like permease family YPD4_2107 PF12704 MacB-like periplasmic core domain YPD4_2108 PF03461 TRCF domain YPD4_2108 PF00271 Helicase conserved C-terminal domain YPD4_2108 PF00270 DEAD/DEAH box helicase YPD4_2108 PF02559 CarD-like/TRCF domain YPD4_2108 PF17757 UvrB interaction domain YPD4_2109 PF05433 Glycine zipper 2TM domain YPD4_2110 PF00872 Transposase, Mutator family YPD4_2113 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD4_2114 PF05728 Uncharacterised protein family (UPF0227) YPD4_2115 PF00933 Glycosyl hydrolase family 3 N terminal domain YPD4_2116 PF01636 Phosphotransferase enzyme family YPD4_2117 PF13036 Peptidoglycan-synthase activator LpoB YPD4_2117 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPD4_2118 PF07233 Protein of unknown function (DUF1425) YPD4_2119 PF01230 HIT domain YPD4_2120 PF08501 Shikimate dehydrogenase substrate binding domain YPD4_2122 PF00367 phosphotransferase system, EIIB YPD4_2122 PF02378 Phosphotransferase system, EIIC YPD4_2123 PF01026 TatD related DNase YPD4_2124 PF09115 DNA polymerase III, delta subunit, C terminal YPD4_2125 PF02223 Thymidylate kinase YPD4_2126 PF02618 YceG-like family YPD4_2127 PF01063 Amino-transferase class IV YPD4_2128 PF01797 Transposase IS200 like YPD4_2129 PF00109 Beta-ketoacyl synthase, N-terminal domain YPD4_2129 PF02801 Beta-ketoacyl synthase, C-terminal domain YPD4_2131 PF00698 Acyl transferase domain YPD4_2132 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPD4_2132 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPD4_2133 PF02504 Fatty acid synthesis protein YPD4_2134 PF02620 Large ribosomal RNA subunit accumulation protein YceD YPD4_2135 PF02545 Maf-like protein YPD4_2137 PF00849 RNA pseudouridylate synthase YPD4_2137 PF01479 S4 domain YPD4_2138 PF12111 Polyribonucleotide phosphorylase C terminal YPD4_2138 PF10150 Ribonuclease E/G family YPD4_2138 PF00575 S1 RNA binding domain YPD4_2139 PF00872 Transposase, Mutator family YPD4_2140 PF01979 Amidohydrolase family YPD4_2141 PF00872 Transposase, Mutator family YPD4_2142 PF01266 FAD dependent oxidoreductase YPD4_2143 PF00196 Bacterial regulatory proteins, luxR family YPD4_2144 PF01594 AI-2E family transporter YPD4_2147 PF00765 Autoinducer synthase YPD4_2148 PF03472 Autoinducer binding domain YPD4_2148 PF00196 Bacterial regulatory proteins, luxR family YPD4_2149 PF03466 LysR substrate binding domain YPD4_2149 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_2150 PF00083 Sugar (and other) transporter YPD4_2152 PF00248 Aldo/keto reductase family YPD4_2153 PF09618 CRISPR-associated protein (Cas_Csy4) YPD4_2154 PF09615 CRISPR-associated protein (Cas_Csy3) YPD4_2155 PF09614 CRISPR-associated protein (Cas_Csy2) YPD4_2156 PF09611 CRISPR-associated protein (Cas_Csy1) YPD4_2158 PF01867 CRISPR associated protein Cas1 YPD4_2159 PF00924 Mechanosensitive ion channel YPD4_2163 PF04041 beta-1,4-mannooligosaccharide phosphorylase YPD4_2164 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_2165 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_2167 PF00356 Bacterial regulatory proteins, lacI family YPD4_2168 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPD4_2168 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPD4_2168 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPD4_2168 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPD4_2169 PF17912 MalK OB fold domain YPD4_2169 PF00005 ABC transporter YPD4_2171 PF04829 Pre-toxin domain with VENN motif YPD4_2171 PF05594 Haemagluttinin repeat YPD4_2171 PF05860 haemagglutination activity domain YPD4_2171 PF15526 Novel toxin 21 YPD4_2171 PF13332 Hemagglutinin repeat YPD4_2173 PF13332 Hemagglutinin repeat YPD4_2173 PF05594 Haemagluttinin repeat YPD4_2173 PF15526 Novel toxin 21 YPD4_2173 PF04829 Pre-toxin domain with VENN motif YPD4_2173 PF05860 haemagglutination activity domain YPD4_2174 PF13018 Extended Signal Peptide of Type V secretion system YPD4_2174 PF13332 Hemagglutinin repeat YPD4_2174 PF04829 Pre-toxin domain with VENN motif YPD4_2174 PF05860 haemagglutination activity domain YPD4_2176 PF05860 haemagglutination activity domain YPD4_2176 PF13332 Hemagglutinin repeat YPD4_2176 PF04829 Pre-toxin domain with VENN motif YPD4_2176 PF13018 Extended Signal Peptide of Type V secretion system YPD4_2177 PF17287 POTRA domain YPD4_2177 PF08479 POTRA domain, ShlB-type YPD4_2177 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPD4_2178 PF00970 Oxidoreductase FAD-binding domain YPD4_2178 PF00111 2Fe-2S iron-sulfur cluster binding domain YPD4_2178 PF00175 Oxidoreductase NAD-binding domain YPD4_2179 PF00848 Ring hydroxylating alpha subunit (catalytic domain) YPD4_2179 PF00355 Rieske [2Fe-2S] domain YPD4_2180 PF02028 BCCT, betaine/carnitine/choline family transporter YPD4_2181 PF00180 Isocitrate/isopropylmalate dehydrogenase YPD4_2182 PF03466 LysR substrate binding domain YPD4_2182 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_2183 PF00356 Bacterial regulatory proteins, lacI family YPD4_2184 PF02653 Branched-chain amino acid transport system / permease component YPD4_2185 PF00005 ABC transporter YPD4_2186 PF13407 Periplasmic binding protein domain YPD4_2187 PF00107 Zinc-binding dehydrogenase YPD4_2187 PF08240 Alcohol dehydrogenase GroES-like domain YPD4_2191 PF13505 Outer membrane protein beta-barrel domain YPD4_2192 PF00892 EamA-like transporter family YPD4_2194 PF13649 Methyltransferase domain YPD4_2195 PF00210 Ferritin-like domain YPD4_2197 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD4_2198 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_2199 PF00005 ABC transporter YPD4_2200 PF08447 PAS fold YPD4_2200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPD4_2200 PF13426 PAS domain YPD4_2201 PF02796 Helix-turn-helix domain of resolvase YPD4_2201 PF00665 Integrase core domain YPD4_2202 PF01695 IstB-like ATP binding protein YPD4_2205 PF00782 Dual specificity phosphatase, catalytic domain YPD4_2206 PF12147 Putative methyltransferase YPD4_2206 PF12146 Serine aminopeptidase, S33 YPD4_2207 PF01553 Acyltransferase YPD4_2209 PF01066 CDP-alcohol phosphatidyltransferase YPD4_2211 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YPD4_2211 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YPD4_2212 PF01797 Transposase IS200 like YPD4_2214 PF02769 AIR synthase related protein, C-terminal domain YPD4_2214 PF00586 AIR synthase related protein, N-terminal domain YPD4_2215 PF00551 Formyl transferase YPD4_2216 PF13302 Acetyltransferase (GNAT) domain YPD4_2219 PF00005 ABC transporter YPD4_2220 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_2221 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_2222 PF13089 Polyphosphate kinase N-terminal domain YPD4_2222 PF17941 Polyphosphate kinase C-terminal domain 1 YPD4_2222 PF13090 Polyphosphate kinase C-terminal domain 2 YPD4_2222 PF02503 Polyphosphate kinase middle domain YPD4_2223 PF02541 Ppx/GppA phosphatase family YPD4_2224 PF00571 CBS domain YPD4_2224 PF03448 MgtE intracellular N domain YPD4_2224 PF01769 Divalent cation transporter YPD4_2225 PF00012 Hsp70 protein YPD4_2226 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_2228 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_2230 PF00202 Aminotransferase class-III YPD4_2231 PF00392 Bacterial regulatory proteins, gntR family YPD4_2231 PF00155 Aminotransferase class I and II YPD4_2232 PF00005 ABC transporter YPD4_2232 PF08402 TOBE domain YPD4_2233 PF13533 Biotin-lipoyl like YPD4_2234 PF00873 AcrB/AcrD/AcrF family YPD4_2235 PF00873 AcrB/AcrD/AcrF family YPD4_2236 PF07690 Major Facilitator Superfamily YPD4_2237 PF00672 HAMP domain YPD4_2237 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_2237 PF00512 His Kinase A (phospho-acceptor) domain YPD4_2238 PF00072 Response regulator receiver domain YPD4_2238 PF00486 Transcriptional regulatory protein, C terminal YPD4_2239 PF07411 Domain of unknown function (DUF1508) YPD4_2241 PF00781 Diacylglycerol kinase catalytic domain YPD4_2244 PF08543 Phosphomethylpyrimidine kinase YPD4_2246 PF00872 Transposase, Mutator family YPD4_2250 PF05638 Type VI secretion system effector, Hcp YPD4_2251 PF01797 Transposase IS200 like YPD4_2252 PF00958 GMP synthase C terminal domain YPD4_2252 PF00117 Glutamine amidotransferase class-I YPD4_2252 PF02540 NAD synthase YPD4_2253 PF00571 CBS domain YPD4_2253 PF00478 IMP dehydrogenase / GMP reductase domain YPD4_2254 PF13742 OB-fold nucleic acid binding domain YPD4_2254 PF02601 Exonuclease VII, large subunit YPD4_2256 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YPD4_2256 PF01926 50S ribosome-binding GTPase YPD4_2257 PF13360 PQQ-like domain YPD4_2258 PF09976 Tetratricopeptide repeat-like domain YPD4_2259 PF13393 Histidyl-tRNA synthetase YPD4_2259 PF03129 Anticodon binding domain YPD4_2260 PF04551 GcpE protein YPD4_2261 PF13464 Domain of unknown function (DUF4115) YPD4_2263 PF04055 Radical SAM superfamily YPD4_2264 PF00334 Nucleoside diphosphate kinase YPD4_2266 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPD4_2266 PF03797 Autotransporter beta-domain YPD4_2266 PF03212 Pertactin YPD4_2267 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPD4_2267 PF03212 Pertactin YPD4_2267 PF03797 Autotransporter beta-domain YPD4_2269 PF07179 SseB protein N-terminal domain YPD4_2269 PF14581 SseB protein C-terminal domain YPD4_2270 PF00883 Cytosol aminopeptidase family, catalytic domain YPD4_2270 PF12404 Peptidase YPD4_2271 PF00111 2Fe-2S iron-sulfur cluster binding domain YPD4_2272 PF00012 Hsp70 protein YPD4_2273 PF00226 DnaJ domain YPD4_2273 PF07743 HSCB C-terminal oligomerisation domain YPD4_2274 PF01521 Iron-sulphur cluster biosynthesis YPD4_2275 PF01592 NifU-like N terminal domain YPD4_2276 PF00266 Aminotransferase class-V YPD4_2277 PF00266 Aminotransferase class-V YPD4_2278 PF02082 Transcriptional regulator YPD4_2279 PF00588 SpoU rRNA Methylase family YPD4_2280 PF00459 Inositol monophosphatase family YPD4_2281 PF01797 Transposase IS200 like YPD4_2282 PF03824 High-affinity nickel-transport protein YPD4_2283 PF06226 Protein of unknown function (DUF1007) YPD4_2284 PF00874 PRD domain YPD4_2285 PF12832 MFS_1 like family YPD4_2286 PF12832 MFS_1 like family YPD4_2287 PF13505 Outer membrane protein beta-barrel domain YPD4_2288 PF00464 Serine hydroxymethyltransferase YPD4_2289 PF00175 Oxidoreductase NAD-binding domain YPD4_2289 PF00042 Globin YPD4_2289 PF00970 Oxidoreductase FAD-binding domain YPD4_2290 PF14503 YhfZ C-terminal domain YPD4_2290 PF14502 Helix-turn-helix domain YPD4_2291 PF14502 Helix-turn-helix domain YPD4_2291 PF14503 YhfZ C-terminal domain YPD4_2292 PF00543 Nitrogen regulatory protein P-II YPD4_2293 PF02540 NAD synthase YPD4_2293 PF00795 Carbon-nitrogen hydrolase YPD4_2294 PF00072 Response regulator receiver domain YPD4_2294 PF00158 Sigma-54 interaction domain YPD4_2295 PF13942 YfhG lipoprotein YPD4_2296 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_2296 PF00512 His Kinase A (phospho-acceptor) domain YPD4_2300 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain YPD4_2300 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal YPD4_2300 PF02769 AIR synthase related protein, C-terminal domain YPD4_2301 PF01464 Transglycosylase SLT domain YPD4_2301 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD4_2302 PF14437 MafB19-like deaminase YPD4_2304 PF01380 SIS domain YPD4_2305 PF01380 SIS domain YPD4_2305 PF01418 Helix-turn-helix domain, rpiR family YPD4_2306 PF01797 Transposase IS200 like YPD4_2307 PF01648 4'-phosphopantetheinyl transferase superfamily YPD4_2308 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ YPD4_2309 PF01695 IstB-like ATP binding protein YPD4_2310 PF00665 Integrase core domain YPD4_2310 PF02796 Helix-turn-helix domain of resolvase YPD4_2311 PF11967 Recombination protein O N terminal YPD4_2311 PF02565 Recombination protein O C terminal YPD4_2312 PF01926 50S ribosome-binding GTPase YPD4_2312 PF07650 KH domain YPD4_2313 PF00035 Double-stranded RNA binding motif YPD4_2313 PF14622 Ribonuclease-III-like YPD4_2314 PF10502 Signal peptidase, peptidase S26 YPD4_2315 PF00679 Elongation factor G C-terminus YPD4_2315 PF00009 Elongation factor Tu GTP binding domain YPD4_2315 PF03144 Elongation factor Tu domain 2 YPD4_2315 PF06421 GTP-binding protein LepA C-terminus YPD4_2318 PF03888 MucB/RseB N-terminal domain YPD4_2318 PF17188 MucB/RseB C-terminal domain YPD4_2319 PF03873 Anti sigma-E protein RseA, C-terminal domain YPD4_2319 PF03872 Anti sigma-E protein RseA, N-terminal domain YPD4_2320 PF04542 Sigma-70 region 2 YPD4_2320 PF08281 Sigma-70, region 4 YPD4_2321 PF00890 FAD binding domain YPD4_2321 PF02910 Fumarate reductase flavoprotein C-term YPD4_2322 PF05175 Methyltransferase small domain YPD4_2323 PF00271 Helicase conserved C-terminal domain YPD4_2323 PF00270 DEAD/DEAH box helicase YPD4_2324 PF12796 Ankyrin repeats (3 copies) YPD4_2326 PF01228 Glycine radical YPD4_2327 PF03167 Uracil DNA glycosylase superfamily YPD4_2328 PF01470 Pyroglutamyl peptidase YPD4_2331 PF03746 LamB/YcsF family YPD4_2332 PF02626 Carboxyltransferase domain, subdomain A and B YPD4_2333 PF02682 Carboxyltransferase domain, subdomain C and D YPD4_2334 PF01784 NIF3 (NGG1p interacting factor 3) YPD4_2335 PF02112 cAMP phosphodiesterases class-II YPD4_2336 PF03441 FAD binding domain of DNA photolyase YPD4_2336 PF00875 DNA photolyase YPD4_2337 PF08349 Protein of unknown function (DUF1722) YPD4_2338 PF03814 Potassium-transporting ATPase A subunit YPD4_2340 PF02669 K+-transporting ATPase, c chain YPD4_2341 PF13493 Domain of unknown function (DUF4118) YPD4_2341 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_2341 PF00512 His Kinase A (phospho-acceptor) domain YPD4_2341 PF02702 Osmosensitive K+ channel His kinase sensor domain YPD4_2341 PF13492 GAF domain YPD4_2342 PF00072 Response regulator receiver domain YPD4_2342 PF00486 Transcriptional regulatory protein, C terminal YPD4_2344 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPD4_2344 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPD4_2344 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPD4_2344 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPD4_2345 PF17206 SeqA protein N-terminal domain YPD4_2345 PF03925 SeqA protein C-terminal domain YPD4_2346 PF04794 YdjC-like protein YPD4_2347 PF07883 Cupin domain YPD4_2347 PF12833 Helix-turn-helix domain YPD4_2348 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit YPD4_2349 PF02378 Phosphotransferase system, EIIC YPD4_2350 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPD4_2351 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPD4_2352 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPD4_2353 PF07885 Ion channel YPD4_2353 PF02254 TrkA-N domain YPD4_2354 PF06411 HdeA/HdeB family YPD4_2355 PF03824 High-affinity nickel-transport protein YPD4_2356 PF03253 Urea transporter YPD4_2357 PF01774 UreD urease accessory protein YPD4_2358 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPD4_2359 PF01730 UreF YPD4_2360 PF02814 UreE urease accessory protein, N-terminal domain YPD4_2360 PF05194 UreE urease accessory protein, C-terminal domain YPD4_2361 PF01979 Amidohydrolase family YPD4_2361 PF00449 Urease alpha-subunit, N-terminal domain YPD4_2362 PF00699 Urease beta subunit YPD4_2363 PF00547 Urease, gamma subunit YPD4_2364 PF00005 ABC transporter YPD4_2365 PF00005 ABC transporter YPD4_2366 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_2366 PF12911 N-terminal TM domain of oligopeptide transport permease C YPD4_2367 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_2368 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPD4_2370 PF06711 Protein of unknown function (DUF1198) YPD4_2371 PF09400 Protein of unknown function (DUF2002) YPD4_2372 PF06392 Acid shock protein repeat YPD4_2373 PF07972 NrdI Flavodoxin like YPD4_2374 PF00317 Ribonucleotide reductase, all-alpha domain YPD4_2374 PF08343 Ribonucleotide reductase N-terminal YPD4_2374 PF02867 Ribonucleotide reductase, barrel domain YPD4_2375 PF02867 Ribonucleotide reductase, barrel domain YPD4_2375 PF00317 Ribonucleotide reductase, all-alpha domain YPD4_2375 PF08343 Ribonucleotide reductase N-terminal YPD4_2376 PF00268 Ribonucleotide reductase, small chain YPD4_2377 PF00005 ABC transporter YPD4_2377 PF00571 CBS domain YPD4_2378 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_2379 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPD4_2381 PF02796 Helix-turn-helix domain of resolvase YPD4_2381 PF00665 Integrase core domain YPD4_2382 PF01695 IstB-like ATP binding protein YPD4_2383 PF13356 Arm DNA-binding domain YPD4_2383 PF00589 Phage integrase family YPD4_2384 PF12697 Alpha/beta hydrolase family YPD4_2385 PF00258 Flavodoxin YPD4_2386 PF01475 Ferric uptake regulator family YPD4_2387 PF02838 Glycosyl hydrolase family 20, domain 2 YPD4_2387 PF03173 Putative carbohydrate binding domain YPD4_2387 PF00728 Glycosyl hydrolase family 20, catalytic domain YPD4_2387 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain YPD4_2388 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain YPD4_2388 PF02838 Glycosyl hydrolase family 20, domain 2 YPD4_2388 PF00728 Glycosyl hydrolase family 20, catalytic domain YPD4_2388 PF03173 Putative carbohydrate binding domain YPD4_2389 PF03573 outer membrane porin, OprD family YPD4_2390 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain YPD4_2390 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPD4_2391 PF01797 Transposase IS200 like YPD4_2392 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPD4_2392 PF02378 Phosphotransferase system, EIIC YPD4_2392 PF00367 phosphotransferase system, EIIB YPD4_2393 PF00367 phosphotransferase system, EIIB YPD4_2393 PF02378 Phosphotransferase system, EIIC YPD4_2393 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPD4_2394 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase YPD4_2395 PF01979 Amidohydrolase family YPD4_2396 PF00480 ROK family YPD4_2396 PF01047 MarR family YPD4_2397 PF13344 Haloacid dehalogenase-like hydrolase YPD4_2398 PF00733 Asparagine synthase YPD4_2398 PF13537 Glutamine amidotransferase domain YPD4_2399 PF01494 FAD binding domain YPD4_2400 PF01938 TRAM domain YPD4_2400 PF00919 Uncharacterized protein family UPF0004 YPD4_2400 PF04055 Radical SAM superfamily YPD4_2401 PF02562 PhoH-like protein YPD4_2402 PF02130 Uncharacterized protein family UPF0054 YPD4_2403 PF00571 CBS domain YPD4_2403 PF03471 Transporter associated domain YPD4_2404 PF00795 Carbon-nitrogen hydrolase YPD4_2405 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD4_2406 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_2407 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_2408 PF00005 ABC transporter YPD4_2409 PF07295 Zinc-ribbon containing domain YPD4_2410 PF13603 Leucyl-tRNA synthetase, Domain 2 YPD4_2410 PF00133 tRNA synthetases class I (I, L, M and V) YPD4_2410 PF08264 Anticodon-binding domain of tRNA YPD4_2411 PF04390 Lipopolysaccharide-assembly YPD4_2412 PF14840 Processivity clamp loader gamma complex DNA pol III C-term YPD4_2412 PF06144 DNA polymerase III, delta subunit YPD4_2413 PF01467 Cytidylyltransferase-like YPD4_2415 PF02590 Predicted SPOUT methyltransferase YPD4_2416 PF00905 Penicillin binding protein transpeptidase domain YPD4_2416 PF03717 Penicillin-binding Protein dimerisation domain YPD4_2417 PF01098 Cell cycle protein YPD4_2418 PF05036 Sporulation related domain YPD4_2418 PF03330 Lytic transglycolase YPD4_2419 PF03330 Lytic transglycolase YPD4_2419 PF05036 Sporulation related domain YPD4_2420 PF07943 Penicillin-binding protein 5, C-terminal domain YPD4_2420 PF00768 D-alanyl-D-alanine carboxypeptidase YPD4_2421 PF03099 Biotin/lipoate A/B protein ligase family YPD4_2422 PF04055 Radical SAM superfamily YPD4_2422 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family YPD4_2423 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPD4_2424 PF00313 'Cold-shock' DNA-binding domain YPD4_2425 PF00196 Bacterial regulatory proteins, luxR family YPD4_2427 PF00005 ABC transporter YPD4_2427 PF00664 ABC transporter transmembrane region YPD4_2429 PF04962 KduI/IolB family YPD4_2430 PF01261 Xylose isomerase-like TIM barrel YPD4_2431 PF00294 pfkB family carbohydrate kinase YPD4_2432 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPD4_2432 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPD4_2433 PF02653 Branched-chain amino acid transport system / permease component YPD4_2434 PF00005 ABC transporter YPD4_2435 PF13407 Periplasmic binding protein domain YPD4_2436 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPD4_2436 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPD4_2437 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPD4_2437 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPD4_2438 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPD4_2438 PF00205 Thiamine pyrophosphate enzyme, central domain YPD4_2438 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPD4_2439 PF00171 Aldehyde dehydrogenase family YPD4_2442 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain YPD4_2442 PF11974 Bacterial alpha-2-macroglobulin MG3 domain YPD4_2442 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain YPD4_2442 PF01835 MG2 domain YPD4_2442 PF00207 Alpha-2-macroglobulin family YPD4_2442 PF17962 Bacterial macroglobulin domain 6 YPD4_2442 PF07703 Alpha-2-macroglobulin bait region domain YPD4_2443 PF00912 Transglycosylase YPD4_2443 PF00905 Penicillin binding protein transpeptidase domain YPD4_2443 PF06832 Penicillin-Binding Protein C-terminus Family YPD4_2444 PF00872 Transposase, Mutator family YPD4_2445 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPD4_2446 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPD4_2446 PF00356 Bacterial regulatory proteins, lacI family YPD4_2447 PF07085 DRTGG domain YPD4_2447 PF01515 Phosphate acetyl/butaryl transferase YPD4_2448 PF00871 Acetokinase family YPD4_2449 PF04217 Protein of unknown function, DUF412 YPD4_2450 PF03887 YfbU domain YPD4_2451 PF13419 Haloacid dehalogenase-like hydrolase YPD4_2452 PF03600 Citrate transporter YPD4_2452 PF02080 TrkA-C domain YPD4_2454 PF00155 Aminotransferase class I and II YPD4_2455 PF03466 LysR substrate binding domain YPD4_2455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_2456 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YPD4_2457 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit YPD4_2458 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit YPD4_2458 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit YPD4_2460 PF10531 SLBB domain YPD4_2460 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPD4_2460 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YPD4_2461 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPD4_2461 PF01568 Molydopterin dinucleotide binding domain YPD4_2461 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YPD4_2461 PF00384 Molybdopterin oxidoreductase YPD4_2462 PF00146 NADH dehydrogenase YPD4_2463 PF12838 4Fe-4S dicluster domain YPD4_2464 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YPD4_2465 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YPD4_2466 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YPD4_2466 PF00361 Proton-conducting membrane transporter YPD4_2467 PF00361 Proton-conducting membrane transporter YPD4_2468 PF00361 Proton-conducting membrane transporter YPD4_2470 PF04074 YhcH/YjgK/YiaL YPD4_2471 PF01202 Shikimate kinase YPD4_2472 PF00106 short chain dehydrogenase YPD4_2474 PF00356 Bacterial regulatory proteins, lacI family YPD4_2475 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPD4_2475 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPD4_2476 PF07690 Major Facilitator Superfamily YPD4_2477 PF03928 Haem-degrading YPD4_2478 PF00920 Dehydratase family YPD4_2479 PF05957 Bacterial protein of unknown function (DUF883) YPD4_2481 PF00425 chorismate binding enzyme YPD4_2482 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPD4_2482 PF16582 Middle domain of thiamine pyrophosphate YPD4_2482 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPD4_2483 PF12697 Alpha/beta hydrolase family YPD4_2484 PF00378 Enoyl-CoA hydratase/isomerase YPD4_2485 PF13378 Enolase C-terminal domain-like YPD4_2486 PF13193 AMP-binding enzyme C-terminal domain YPD4_2486 PF00501 AMP-binding enzyme YPD4_2487 PF02885 Glycosyl transferase family, helical bundle domain YPD4_2488 PF05971 RNA methyltransferase YPD4_2489 PF01695 IstB-like ATP binding protein YPD4_2490 PF02796 Helix-turn-helix domain of resolvase YPD4_2490 PF00665 Integrase core domain YPD4_2491 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_2491 PF03466 LysR substrate binding domain YPD4_2492 PF00248 Aldo/keto reductase family YPD4_2493 PF00248 Aldo/keto reductase family YPD4_2498 PF00872 Transposase, Mutator family YPD4_2499 PF08007 Cupin superfamily protein YPD4_2501 PF03212 Pertactin YPD4_2501 PF13018 Extended Signal Peptide of Type V secretion system YPD4_2501 PF03797 Autotransporter beta-domain YPD4_2501 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPD4_2502 PF05638 Type VI secretion system effector, Hcp YPD4_2506 PF00905 Penicillin binding protein transpeptidase domain YPD4_2506 PF06832 Penicillin-Binding Protein C-terminus Family YPD4_2506 PF00912 Transglycosylase YPD4_2507 PF00872 Transposase, Mutator family YPD4_2508 PF03611 PTS system sugar-specific permease component YPD4_2509 PF00293 NUDIX domain YPD4_2510 PF12850 Calcineurin-like phosphoesterase superfamily domain YPD4_2512 PF08338 Domain of unknown function (DUF1731) YPD4_2512 PF01370 NAD dependent epimerase/dehydratase family YPD4_2513 PF00005 ABC transporter YPD4_2514 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_2515 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_2516 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD4_2517 PF02441 Flavoprotein YPD4_2518 PF00156 Phosphoribosyl transferase domain YPD4_2519 PF02674 Colicin V production protein YPD4_2520 PF05036 Sporulation related domain YPD4_2521 PF08245 Mur ligase middle domain YPD4_2521 PF02875 Mur ligase family, glutamate ligase domain YPD4_2522 PF01039 Carboxyl transferase domain YPD4_2522 PF17848 Acetyl-coA carboxylase zinc finger domain YPD4_2523 PF09335 SNARE associated Golgi protein YPD4_2524 PF01416 tRNA pseudouridine synthase YPD4_2525 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPD4_2525 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPD4_2526 PF11890 Domain of unknown function (DUF3410) YPD4_2526 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPD4_2526 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPD4_2528 PF00892 EamA-like transporter family YPD4_2530 PF00419 Fimbrial protein YPD4_2531 PF01177 Asp/Glu/Hydantoin racemase YPD4_2532 PF00109 Beta-ketoacyl synthase, N-terminal domain YPD4_2532 PF02801 Beta-ketoacyl synthase, C-terminal domain YPD4_2533 PF00109 Beta-ketoacyl synthase, N-terminal domain YPD4_2533 PF02801 Beta-ketoacyl synthase, C-terminal domain YPD4_2534 PF01266 FAD dependent oxidoreductase YPD4_2534 PF05430 S-adenosyl-L-methionine-dependent methyltransferase YPD4_2535 PF04315 Elongation factor P hydroxylase YPD4_2536 PF01925 Sulfite exporter TauE/SafE YPD4_2537 PF03411 Penicillin-insensitive murein endopeptidase YPD4_2538 PF01264 Chorismate synthase YPD4_2539 PF05175 Methyltransferase small domain YPD4_2540 PF01713 Smr domain YPD4_2541 PF00300 Histidine phosphatase superfamily (branch 1) YPD4_2542 PF00378 Enoyl-CoA hydratase/isomerase YPD4_2542 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPD4_2542 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPD4_2543 PF02803 Thiolase, C-terminal domain YPD4_2543 PF00108 Thiolase, N-terminal domain YPD4_2544 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) YPD4_2545 PF04333 MlaA lipoprotein YPD4_2546 PF03918 Cytochrome C biogenesis protein YPD4_2547 PF03918 Cytochrome C biogenesis protein YPD4_2548 PF08534 Redoxin YPD4_2549 PF01578 Cytochrome C assembly protein YPD4_2549 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal YPD4_2550 PF03100 CcmE YPD4_2551 PF04995 Heme exporter protein D (CcmD) YPD4_2552 PF01578 Cytochrome C assembly protein YPD4_2553 PF03379 CcmB protein YPD4_2554 PF00005 ABC transporter YPD4_2556 PF04011 LemA family YPD4_2558 PF08274 PhnA Zinc-Ribbon YPD4_2558 PF03831 PhnA domain YPD4_2563 PF04717 Type VI secretion system, phage-baseplate injector YPD4_2566 PF01695 IstB-like ATP binding protein YPD4_2567 PF02796 Helix-turn-helix domain of resolvase YPD4_2567 PF00665 Integrase core domain YPD4_2575 PF13954 PapC N-terminal domain YPD4_2575 PF00577 Outer membrane usher protein YPD4_2575 PF13953 PapC C-terminal domain YPD4_2576 PF00872 Transposase, Mutator family YPD4_2577 PF00577 Outer membrane usher protein YPD4_2577 PF13954 PapC N-terminal domain YPD4_2577 PF13953 PapC C-terminal domain YPD4_2578 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD4_2578 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD4_2579 PF16970 Type-1 fimbrial protein, A YPD4_2580 PF10431 C-terminal, D2-small domain, of ClpB protein YPD4_2580 PF17871 AAA lid domain YPD4_2580 PF07724 AAA domain (Cdc48 subfamily) YPD4_2580 PF00004 ATPase family associated with various cellular activities (AAA) YPD4_2590 PF13406 Transglycosylase SLT domain YPD4_2592 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_2593 PF00005 ABC transporter YPD4_2596 PF01568 Molydopterin dinucleotide binding domain YPD4_2596 PF00384 Molybdopterin oxidoreductase YPD4_2596 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPD4_2597 PF13247 4Fe-4S dicluster domain YPD4_2597 PF12800 4Fe-4S binding domain YPD4_2598 PF04976 DMSO reductase anchor subunit (DmsC) YPD4_2599 PF02613 Nitrate reductase delta subunit YPD4_2601 PF05643 Putative bacterial lipoprotein (DUF799) YPD4_2603 PF03783 Curli production assembly/transport component CsgG YPD4_2605 PF01292 Prokaryotic cytochrome b561 YPD4_2606 PF00155 Aminotransferase class I and II YPD4_2607 PF07350 Protein of unknown function (DUF1479) YPD4_2608 PF02685 Glucokinase YPD4_2610 PF03466 LysR substrate binding domain YPD4_2610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_2611 PF00248 Aldo/keto reductase family YPD4_2613 PF01566 Natural resistance-associated macrophage protein YPD4_2614 PF07662 Na+ dependent nucleoside transporter C-terminus YPD4_2614 PF01773 Na+ dependent nucleoside transporter N-terminus YPD4_2614 PF07670 Nucleoside recognition YPD4_2615 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPD4_2616 PF01797 Transposase IS200 like YPD4_2619 PF03119 NAD-dependent DNA ligase C4 zinc finger domain YPD4_2619 PF00533 BRCA1 C Terminus (BRCT) domain YPD4_2619 PF12826 Helix-hairpin-helix motif YPD4_2619 PF01653 NAD-dependent DNA ligase adenylation domain YPD4_2619 PF03120 NAD-dependent DNA ligase OB-fold domain YPD4_2620 PF04354 ZipA, C-terminal FtsZ-binding domain YPD4_2622 PF00291 Pyridoxal-phosphate dependent enzyme YPD4_2623 PF05524 PEP-utilising enzyme, N-terminal YPD4_2623 PF00391 PEP-utilising enzyme, mobile domain YPD4_2623 PF02896 PEP-utilising enzyme, TIM barrel domain YPD4_2624 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPD4_2626 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_2626 PF00512 His Kinase A (phospho-acceptor) domain YPD4_2626 PF00672 HAMP domain YPD4_2626 PF16527 Two-component sensor protein CpxA, periplasmic domain YPD4_2627 PF00486 Transcriptional regulatory protein, C terminal YPD4_2627 PF00072 Response regulator receiver domain YPD4_2628 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD4_2629 PF00005 ABC transporter YPD4_2629 PF12704 MacB-like periplasmic core domain YPD4_2629 PF02687 FtsX-like permease family YPD4_2630 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPD4_2630 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD4_2631 PF00474 Sodium:solute symporter family YPD4_2632 PF05195 Aminopeptidase P, N-terminal domain YPD4_2632 PF00557 Metallopeptidase family M24 YPD4_2633 PF00155 Aminotransferase class I and II YPD4_2635 PF00672 HAMP domain YPD4_2635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_2635 PF00512 His Kinase A (phospho-acceptor) domain YPD4_2636 PF00072 Response regulator receiver domain YPD4_2636 PF00486 Transcriptional regulatory protein, C terminal YPD4_2638 PF00291 Pyridoxal-phosphate dependent enzyme YPD4_2639 PF00005 ABC transporter YPD4_2640 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_2641 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_2643 PF07690 Major Facilitator Superfamily YPD4_2644 PF01380 SIS domain YPD4_2644 PF01418 Helix-turn-helix domain, rpiR family YPD4_2645 PF04074 YhcH/YjgK/YiaL YPD4_2646 PF00480 ROK family YPD4_2647 PF12468 Type III secretion system leucine rich repeat protein YPD4_2649 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase YPD4_2650 PF00701 Dihydrodipicolinate synthetase family YPD4_2651 PF04261 Dyp-type peroxidase family YPD4_2652 PF06572 Protein of unknown function (DUF1131) YPD4_2653 PF04076 Bacterial OB fold (BOF) protein YPD4_2654 PF03212 Pertactin YPD4_2654 PF13018 Extended Signal Peptide of Type V secretion system YPD4_2654 PF03797 Autotransporter beta-domain YPD4_2654 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPD4_2656 PF00583 Acetyltransferase (GNAT) family YPD4_2657 PF01218 Coproporphyrinogen III oxidase YPD4_2658 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 YPD4_2659 PF00390 Malic enzyme, N-terminal domain YPD4_2659 PF03949 Malic enzyme, NAD binding domain YPD4_2659 PF01515 Phosphate acetyl/butaryl transferase YPD4_2660 PF00293 NUDIX domain YPD4_2661 PF03264 NapC/NirT cytochrome c family, N-terminal region YPD4_2662 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) YPD4_2663 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPD4_2663 PF00384 Molybdopterin oxidoreductase YPD4_2663 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPD4_2663 PF01568 Molydopterin dinucleotide binding domain YPD4_2664 PF00037 4Fe-4S binding domain YPD4_2664 PF12800 4Fe-4S binding domain YPD4_2664 PF13187 4Fe-4S dicluster domain YPD4_2665 PF00196 Bacterial regulatory proteins, luxR family YPD4_2665 PF00072 Response regulator receiver domain YPD4_2666 PF00873 AcrB/AcrD/AcrF family YPD4_2668 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPD4_2669 PF04055 Radical SAM superfamily YPD4_2669 PF13186 Iron-sulfur cluster-binding domain YPD4_2670 PF00884 Sulfatase YPD4_2671 PF08402 TOBE domain YPD4_2671 PF00005 ABC transporter YPD4_2672 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_2675 PF03960 ArsC family YPD4_2676 PF01546 Peptidase family M20/M25/M40 YPD4_2676 PF07687 Peptidase dimerisation domain YPD4_2677 PF02557 D-alanyl-D-alanine carboxypeptidase YPD4_2678 PF08351 Domain of unknown function (DUF1726) YPD4_2678 PF13718 GNAT acetyltransferase 2 YPD4_2678 PF05127 Helicase YPD4_2678 PF17176 tRNA-binding domain YPD4_2679 PF05127 Helicase YPD4_2679 PF13718 GNAT acetyltransferase 2 YPD4_2679 PF17176 tRNA-binding domain YPD4_2679 PF08351 Domain of unknown function (DUF1726) YPD4_2680 PF04284 Protein of unknown function (DUF441) YPD4_2681 PF04228 Putative neutral zinc metallopeptidase YPD4_2682 PF01259 SAICAR synthetase YPD4_2683 PF01797 Transposase IS200 like YPD4_2684 PF06804 NlpB/DapX lipoprotein YPD4_2685 PF00701 Dihydrodipicolinate synthetase family YPD4_2686 PF01842 ACT domain YPD4_2687 PF00578 AhpC/TSA family YPD4_2689 PF01594 AI-2E family transporter YPD4_2690 PF07720 Tetratricopeptide repeat YPD4_2690 PF01435 Peptidase family M48 YPD4_2691 PF03960 ArsC family YPD4_2692 PF00308 Bacterial dnaA protein YPD4_2693 PF01797 Transposase IS200 like YPD4_2694 PF01406 tRNA synthetases class I (C) catalytic domain YPD4_2694 PF09190 DALR domain YPD4_2695 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPD4_2696 PF00149 Calcineurin-like phosphoesterase YPD4_2697 PF00731 AIR carboxylase YPD4_2698 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain YPD4_2698 PF02222 ATP-grasp domain YPD4_2701 PF00005 ABC transporter YPD4_2702 PF13472 GDSL-like Lipase/Acylhydrolase family YPD4_2703 PF00106 short chain dehydrogenase YPD4_2704 PF00085 Thioredoxin YPD4_2705 PF16200 C-terminal region of band_7 YPD4_2705 PF01145 SPFH domain / Band 7 family YPD4_2706 PF01957 NfeD-like C-terminal, partner-binding YPD4_2707 PF13411 MerR HTH family regulatory protein YPD4_2708 PF00403 Heavy-metal-associated domain YPD4_2709 PF01963 TraB family YPD4_2710 PF04073 Aminoacyl-tRNA editing domain YPD4_2711 PF02872 5'-nucleotidase, C-terminal domain YPD4_2711 PF00149 Calcineurin-like phosphoesterase YPD4_2712 PF02872 5'-nucleotidase, C-terminal domain YPD4_2712 PF00149 Calcineurin-like phosphoesterase YPD4_2713 PF07690 Major Facilitator Superfamily YPD4_2714 PF02254 TrkA-N domain YPD4_2714 PF00999 Sodium/hydrogen exchanger family YPD4_2715 PF00294 pfkB family carbohydrate kinase YPD4_2716 PF02706 Chain length determinant protein YPD4_2717 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPD4_2717 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPD4_2717 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPD4_2717 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPD4_2718 PF00535 Glycosyl transferase family 2 YPD4_2719 PF00483 Nucleotidyl transferase YPD4_2719 PF01050 Mannose-6-phosphate isomerase YPD4_2720 PF01370 NAD dependent epimerase/dehydratase family YPD4_2721 PF16363 GDP-mannose 4,6 dehydratase YPD4_2722 PF16363 GDP-mannose 4,6 dehydratase YPD4_2723 PF00534 Glycosyl transferases group 1 YPD4_2723 PF13439 Glycosyltransferase Family 4 YPD4_2729 PF01370 NAD dependent epimerase/dehydratase family YPD4_2730 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPD4_2731 PF16363 GDP-mannose 4,6 dehydratase YPD4_2732 PF00483 Nucleotidyl transferase YPD4_2733 PF00111 2Fe-2S iron-sulfur cluster binding domain YPD4_2733 PF00970 Oxidoreductase FAD-binding domain YPD4_2733 PF00175 Oxidoreductase NAD-binding domain YPD4_2734 PF00762 Ferrochelatase YPD4_2735 PF05191 Adenylate kinase, active site lid YPD4_2736 PF00183 Hsp90 protein YPD4_2736 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_2737 PF02132 RecR protein YPD4_2737 PF13662 Toprim domain YPD4_2738 PF02575 YbaB/EbfC DNA-binding family YPD4_2739 PF12170 DNA polymerase III tau subunit V interacting with alpha YPD4_2739 PF12169 DNA polymerase III subunits gamma and tau domain III YPD4_2739 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding YPD4_2740 PF00156 Phosphoribosyl transferase domain YPD4_2742 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPD4_2742 PF00924 Mechanosensitive ion channel YPD4_2742 PF12795 Mechanosensitive ion channel porin domain YPD4_2743 PF02635 DsrE/DsrF-like family YPD4_2744 PF00440 Bacterial regulatory proteins, tetR family YPD4_2744 PF08361 MAATS-type transcriptional repressor, C-terminal region YPD4_2745 PF00529 HlyD membrane-fusion protein of T1SS YPD4_2745 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD4_2746 PF00873 AcrB/AcrD/AcrF family YPD4_2747 PF00873 AcrB/AcrD/AcrF family YPD4_2749 PF10757 Biofilm formation regulator YbaJ YPD4_2750 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPD4_2751 PF09619 Type III secretion system lipoprotein chaperone (YscW) YPD4_2753 PF00909 Ammonium Transporter Family YPD4_2754 PF00543 Nitrogen regulatory protein P-II YPD4_2755 PF00664 ABC transporter transmembrane region YPD4_2755 PF00005 ABC transporter YPD4_2756 PF00664 ABC transporter transmembrane region YPD4_2756 PF00005 ABC transporter YPD4_2757 PF01037 Lrp/AsnC ligand binding domain YPD4_2757 PF13404 AsnC-type helix-turn-helix domain YPD4_2758 PF00291 Pyridoxal-phosphate dependent enzyme YPD4_2760 PF12793 Sugar transport-related sRNA regulator N-term YPD4_2760 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPD4_2761 PF06508 Queuosine biosynthesis protein QueC YPD4_2764 PF13145 PPIC-type PPIASE domain YPD4_2765 PF00004 ATPase family associated with various cellular activities (AAA) YPD4_2765 PF05362 Lon protease (S16) C-terminal proteolytic domain YPD4_2765 PF02190 ATP-dependent protease La (LON) substrate-binding domain YPD4_2766 PF05362 Lon protease (S16) C-terminal proteolytic domain YPD4_2766 PF00004 ATPase family associated with various cellular activities (AAA) YPD4_2766 PF02190 ATP-dependent protease La (LON) substrate-binding domain YPD4_2767 PF07724 AAA domain (Cdc48 subfamily) YPD4_2767 PF10431 C-terminal, D2-small domain, of ClpB protein YPD4_2767 PF06689 ClpX C4-type zinc finger YPD4_2768 PF00574 Clp protease YPD4_2769 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPD4_2769 PF05698 Bacterial trigger factor protein (TF) C-terminus YPD4_2769 PF05697 Bacterial trigger factor protein (TF) YPD4_2770 PF01722 BolA-like protein YPD4_2771 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPD4_2771 PF03923 Uncharacterized lipoprotein YPD4_2772 PF07690 Major Facilitator Superfamily YPD4_2773 PF03502 Nucleoside-specific channel-forming protein, Tsx YPD4_2774 PF06481 COX Aromatic Rich Motif YPD4_2774 PF00116 Cytochrome C oxidase subunit II, periplasmic domain YPD4_2775 PF00115 Cytochrome C and Quinol oxidase polypeptide I YPD4_2776 PF00510 Cytochrome c oxidase subunit III YPD4_2777 PF03626 Prokaryotic Cytochrome C oxidase subunit IV YPD4_2778 PF01040 UbiA prenyltransferase family YPD4_2779 PF07690 Major Facilitator Superfamily YPD4_2780 PF04461 Protein of unknown function (DUF520) YPD4_2781 PF02558 Ketopantoate reductase PanE/ApbA YPD4_2781 PF08546 Ketopantoate reductase PanE/ApbA C terminal YPD4_2782 PF01965 DJ-1/PfpI family YPD4_2783 PF02568 Thiamine biosynthesis protein (ThiI) YPD4_2783 PF02926 THUMP domain YPD4_2784 PF00348 Polyprenyl synthetase YPD4_2785 PF13292 1-deoxy-D-xylulose-5-phosphate synthase YPD4_2785 PF02780 Transketolase, C-terminal domain YPD4_2785 PF02779 Transketolase, pyrimidine binding domain YPD4_2787 PF04608 Phosphatidylglycerophosphatase A YPD4_2788 PF02769 AIR synthase related protein, C-terminal domain YPD4_2788 PF00586 AIR synthase related protein, N-terminal domain YPD4_2789 PF01029 NusB family YPD4_2790 PF00885 6,7-dimethyl-8-ribityllumazine synthase YPD4_2791 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPD4_2791 PF01872 RibD C-terminal domain YPD4_2792 PF03477 ATP cone domain YPD4_2795 PF07549 SecD/SecF GG Motif YPD4_2795 PF02355 Protein export membrane protein YPD4_2796 PF13721 SecD export protein N-terminal TM region YPD4_2796 PF07549 SecD/SecF GG Motif YPD4_2796 PF02355 Protein export membrane protein YPD4_2797 PF02699 Preprotein translocase subunit YPD4_2798 PF01702 Queuine tRNA-ribosyltransferase YPD4_2799 PF02547 Queuosine biosynthesis protein YPD4_2800 PF04336 Acyl carrier protein phosphodiesterase YPD4_2801 PF00578 AhpC/TSA family YPD4_2801 PF10417 C-terminal domain of 1-Cys peroxiredoxin YPD4_2804 PF02903 Alpha amylase, N-terminal ig-like domain YPD4_2804 PF00128 Alpha amylase, catalytic domain YPD4_2805 PF00324 Amino acid permease YPD4_2806 PF05525 Branched-chain amino acid transport protein YPD4_2807 PF12849 PBP superfamily domain YPD4_2808 PF11808 Phosphate regulon sensor protein PhoR YPD4_2808 PF00512 His Kinase A (phospho-acceptor) domain YPD4_2808 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_2808 PF00989 PAS fold YPD4_2809 PF00486 Transcriptional regulatory protein, C terminal YPD4_2809 PF00072 Response regulator receiver domain YPD4_2810 PF12320 Type 5 capsule protein repressor C-terminal domain YPD4_2810 PF00149 Calcineurin-like phosphoesterase YPD4_2811 PF13476 AAA domain YPD4_2812 PF00480 ROK family YPD4_2813 PF04381 Putative exonuclease, RdgC YPD4_2814 PF01202 Shikimate kinase YPD4_2816 PF08241 Methyltransferase domain YPD4_2817 PF07317 Flagellar regulator YcgR YPD4_2817 PF07238 PilZ domain YPD4_2818 PF00171 Aldehyde dehydrogenase family YPD4_2819 PF01472 PUA domain YPD4_2819 PF00696 Amino acid kinase family YPD4_2820 PF07417 Sigma factor-binding transcriptional regulator Crl YPD4_2822 PF00156 Phosphoribosyl transferase domain YPD4_2825 PF07687 Peptidase dimerisation domain YPD4_2825 PF01546 Peptidase family M20/M25/M40 YPD4_2826 PF11799 impB/mucB/samB family C-terminal domain YPD4_2826 PF11798 IMS family HHH motif YPD4_2826 PF00817 impB/mucB/samB family YPD4_2827 PF03009 Glycerophosphoryl diester phosphodiesterase family YPD4_2828 PF02424 ApbE family YPD4_2829 PF00111 2Fe-2S iron-sulfur cluster binding domain YPD4_2829 PF00175 Oxidoreductase NAD-binding domain YPD4_2829 PF00970 Oxidoreductase FAD-binding domain YPD4_2830 PF02508 Rnf-Nqr subunit, membrane protein YPD4_2831 PF02508 Rnf-Nqr subunit, membrane protein YPD4_2832 PF04205 FMN-binding domain YPD4_2833 PF03116 NQR2, RnfD, RnfE family YPD4_2834 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) YPD4_2834 PF11973 NQRA C-terminal domain YPD4_2835 PF03734 L,D-transpeptidase catalytic domain YPD4_2836 PF13230 Glutamine amidotransferases class-II YPD4_2837 PF13580 SIS domain YPD4_2838 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPD4_2838 PF09317 Domain of unknown function (DUF1974) YPD4_2838 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YPD4_2840 PF18071 HMW1C N-terminal YPD4_2840 PF18254 HMW1 domain 2 YPD4_2841 PF05860 haemagglutination activity domain YPD4_2842 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPD4_2842 PF08479 POTRA domain, ShlB-type YPD4_2843 PF07687 Peptidase dimerisation domain YPD4_2843 PF01546 Peptidase family M20/M25/M40 YPD4_2844 PF00266 Aminotransferase class-V YPD4_2845 PF02796 Helix-turn-helix domain of resolvase YPD4_2845 PF00665 Integrase core domain YPD4_2846 PF01695 IstB-like ATP binding protein YPD4_2847 PF00266 Aminotransferase class-V YPD4_2848 PF00005 ABC transporter YPD4_2850 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_2851 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD4_2853 PF01425 Amidase YPD4_2855 PF07690 Major Facilitator Superfamily YPD4_2856 PF03591 AzlC protein YPD4_2857 PF05437 Branched-chain amino acid transport protein (AzlD) YPD4_2858 PF01047 MarR family YPD4_2859 PF00529 HlyD membrane-fusion protein of T1SS YPD4_2859 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD4_2860 PF07690 Major Facilitator Superfamily YPD4_2861 PF07690 Major Facilitator Superfamily YPD4_2862 PF00588 SpoU rRNA Methylase family YPD4_2862 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPD4_2864 PF00583 Acetyltransferase (GNAT) family YPD4_2864 PF13380 CoA binding domain YPD4_2864 PF13607 Succinyl-CoA ligase like flavodoxin domain YPD4_2865 PF13091 PLD-like domain YPD4_2866 PF10043 Predicted periplasmic lipoprotein (DUF2279) YPD4_2868 PF07724 AAA domain (Cdc48 subfamily) YPD4_2868 PF00004 ATPase family associated with various cellular activities (AAA) YPD4_2868 PF02861 Clp amino terminal domain, pathogenicity island component YPD4_2868 PF17871 AAA lid domain YPD4_2868 PF10431 C-terminal, D2-small domain, of ClpB protein YPD4_2869 PF07724 AAA domain (Cdc48 subfamily) YPD4_2869 PF02861 Clp amino terminal domain, pathogenicity island component YPD4_2869 PF17871 AAA lid domain YPD4_2869 PF00004 ATPase family associated with various cellular activities (AAA) YPD4_2869 PF10431 C-terminal, D2-small domain, of ClpB protein YPD4_2871 PF01479 S4 domain YPD4_2871 PF00849 RNA pseudouridylate synthase YPD4_2872 PF13525 Outer membrane lipoprotein YPD4_2873 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YPD4_2874 PF01797 Transposase IS200 like YPD4_2875 PF01817 Chorismate mutase type II YPD4_2875 PF00800 Prephenate dehydratase YPD4_2876 PF02153 Prephenate dehydrogenase YPD4_2876 PF01817 Chorismate mutase type II YPD4_2877 PF00793 DAHP synthetase I family YPD4_2878 PF00793 DAHP synthetase I family YPD4_2879 PF00072 Response regulator receiver domain YPD4_2879 PF04397 LytTr DNA-binding domain YPD4_2880 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPD4_2881 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPD4_2882 PF04338 Protein of unknown function, DUF481 YPD4_2884 PF01245 Ribosomal protein L19 YPD4_2885 PF01746 tRNA (Guanine-1)-methyltransferase YPD4_2886 PF05239 PRC-barrel domain YPD4_2886 PF01782 RimM N-terminal domain YPD4_2887 PF00448 SRP54-type protein, GTPase domain YPD4_2887 PF02881 SRP54-type protein, helical bundle domain YPD4_2887 PF02978 Signal peptide binding domain YPD4_2888 PF01578 Cytochrome C assembly protein YPD4_2889 PF00571 CBS domain YPD4_2889 PF01595 Cyclin M transmembrane N-terminal domain YPD4_2889 PF03471 Transporter associated domain YPD4_2891 PF02664 S-Ribosylhomocysteinase (LuxS) YPD4_2892 PF04262 Glutamate-cysteine ligase YPD4_2893 PF09335 SNARE associated Golgi protein YPD4_2894 PF13419 Haloacid dehalogenase-like hydrolase YPD4_2895 PF02272 DHHA1 domain YPD4_2895 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPD4_2895 PF01411 tRNA synthetases class II (A) YPD4_2896 PF02631 RecX family YPD4_2897 PF00154 recA bacterial DNA recombination protein YPD4_2898 PF02464 Competence-damaged protein YPD4_2899 PF07690 Major Facilitator Superfamily YPD4_2902 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPD4_2902 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD4_2903 PF02779 Transketolase, pyrimidine binding domain YPD4_2903 PF02780 Transketolase, C-terminal domain YPD4_2904 PF00456 Transketolase, thiamine diphosphate binding domain YPD4_2905 PF02653 Branched-chain amino acid transport system / permease component YPD4_2906 PF00005 ABC transporter YPD4_2909 PF00141 Peroxidase YPD4_2910 PF07361 Cytochrome b562 YPD4_2911 PF02613 Nitrate reductase delta subunit YPD4_2912 PF04976 DMSO reductase anchor subunit (DmsC) YPD4_2913 PF12800 4Fe-4S binding domain YPD4_2913 PF13247 4Fe-4S dicluster domain YPD4_2914 PF01568 Molydopterin dinucleotide binding domain YPD4_2914 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPD4_2914 PF00384 Molybdopterin oxidoreductase YPD4_2915 PF00596 Class II Aldolase and Adducin N-terminal domain YPD4_2916 PF08220 DeoR-like helix-turn-helix domain YPD4_2916 PF00455 DeoR C terminal sensor domain YPD4_2918 PF00005 ABC transporter YPD4_2919 PF02653 Branched-chain amino acid transport system / permease component YPD4_2920 PF02653 Branched-chain amino acid transport system / permease component YPD4_2921 PF01261 Xylose isomerase-like TIM barrel YPD4_2922 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD4_2922 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPD4_2923 PF05681 Fumarate hydratase (Fumerase) YPD4_2923 PF05683 Fumarase C-terminus YPD4_2924 PF00557 Metallopeptidase family M24 YPD4_2927 PF00593 TonB dependent receptor YPD4_2927 PF07715 TonB-dependent Receptor Plug Domain YPD4_2930 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD4_2931 PF01022 Bacterial regulatory protein, arsR family YPD4_2932 PF02040 Arsenical pump membrane protein YPD4_2933 PF13936 Helix-turn-helix domain YPD4_2933 PF04198 Putative sugar-binding domain YPD4_2934 PF02734 DAK2 domain YPD4_2935 PF02733 Dak1 domain YPD4_2937 PF08240 Alcohol dehydrogenase GroES-like domain YPD4_2937 PF00107 Zinc-binding dehydrogenase YPD4_2938 PF02502 Ribose/Galactose Isomerase YPD4_2939 PF05192 MutS domain III YPD4_2939 PF05188 MutS domain II YPD4_2939 PF05190 MutS family domain IV YPD4_2939 PF01624 MutS domain I YPD4_2939 PF00488 MutS domain V YPD4_2940 PF00140 Sigma-70 factor, region 1.2 YPD4_2940 PF04542 Sigma-70 region 2 YPD4_2940 PF04545 Sigma-70, region 4 YPD4_2940 PF04539 Sigma-70 region 3 YPD4_2941 PF01551 Peptidase family M23 YPD4_2941 PF01476 LysM domain YPD4_2943 PF01975 Survival protein SurE YPD4_2944 PF01142 tRNA pseudouridine synthase D (TruD) YPD4_2945 PF02542 YgbB family YPD4_2946 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YPD4_2947 PF04977 Septum formation initiator YPD4_2948 PF12084 Protein of unknown function (DUF3561) YPD4_2950 PF00009 Elongation factor Tu GTP binding domain YPD4_2951 PF01507 Phosphoadenosine phosphosulfate reductase family YPD4_2952 PF14824 Sirohaem biosynthesis protein central YPD4_2952 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPD4_2952 PF10414 Sirohaem synthase dimerisation region YPD4_2954 PF01507 Phosphoadenosine phosphosulfate reductase family YPD4_2955 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPD4_2955 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPD4_2956 PF00175 Oxidoreductase NAD-binding domain YPD4_2956 PF00258 Flavodoxin YPD4_2956 PF00667 FAD binding domain YPD4_2957 PF01242 6-pyruvoyl tetrahydropterin synthase YPD4_2958 PF04055 Radical SAM superfamily YPD4_2959 PF00080 Copper/zinc superoxide dismutase (SODC) YPD4_2960 PF03952 Enolase, N-terminal domain YPD4_2960 PF00113 Enolase, C-terminal TIM barrel domain YPD4_2961 PF06418 CTP synthase N-terminus YPD4_2961 PF00117 Glutamine amidotransferase class-I YPD4_2962 PF03819 MazG nucleotide pyrophosphohydrolase domain YPD4_2963 PF04607 Region found in RelA / SpoT proteins YPD4_2963 PF02824 TGS domain YPD4_2963 PF13291 ACT domain YPD4_2964 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPD4_2964 PF00072 Response regulator receiver domain YPD4_2964 PF00672 HAMP domain YPD4_2964 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_2964 PF00512 His Kinase A (phospho-acceptor) domain YPD4_2964 PF01627 Hpt domain YPD4_2965 PF00595 PDZ domain YPD4_2966 PF00595 PDZ domain YPD4_2967 PF13286 Phosphohydrolase-associated domain YPD4_2967 PF01966 HD domain YPD4_2968 PF01048 Phosphorylase superfamily YPD4_2969 PF01497 Periplasmic binding protein YPD4_2970 PF03458 UPF0126 domain YPD4_2971 PF01521 Iron-sulphur cluster biosynthesis YPD4_2972 PF00654 Voltage gated chloride channel YPD4_2973 PF00202 Aminotransferase class-III YPD4_2974 PF01032 FecCD transport family YPD4_2975 PF01497 Periplasmic binding protein YPD4_2976 PF00005 ABC transporter YPD4_2977 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal YPD4_2977 PF00912 Transglycosylase YPD4_2977 PF00905 Penicillin binding protein transpeptidase domain YPD4_2977 PF14814 Bifunctional transglycosylase second domain YPD4_2978 PF04408 Helicase associated domain (HA2) YPD4_2978 PF00271 Helicase conserved C-terminal domain YPD4_2978 PF08482 ATP-dependent helicase C-terminal YPD4_2978 PF00270 DEAD/DEAH box helicase YPD4_2979 PF02834 LigT like Phosphoesterase YPD4_2980 PF17746 SfsA N-terminal OB domain YPD4_2980 PF03749 Sugar fermentation stimulation protein RE domain YPD4_2981 PF01258 Prokaryotic dksA/traR C4-type zinc finger YPD4_2982 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPD4_2983 PF01743 Poly A polymerase head domain YPD4_2983 PF12626 Polymerase A arginine-rich C-terminus YPD4_2983 PF12627 Probable RNA and SrmB- binding site of polymerase A YPD4_2984 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) YPD4_2985 PF02548 Ketopantoate hydroxymethyltransferase YPD4_2986 PF02569 Pantoate-beta-alanine ligase YPD4_2987 PF02261 Aspartate decarboxylase YPD4_2988 PF01522 Polysaccharide deacetylase YPD4_2989 PF01061 ABC-2 type transporter YPD4_2990 PF00005 ABC transporter YPD4_2991 PF00484 Carbonic anhydrase YPD4_2992 PF00156 Phosphoribosyl transferase domain YPD4_2993 PF07732 Multicopper oxidase YPD4_2993 PF07731 Multicopper oxidase YPD4_2993 PF00394 Multicopper oxidase YPD4_2993 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPD4_2994 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) YPD4_2995 PF17284 Spermidine synthase tetramerisation domain YPD4_2996 PF02675 S-adenosylmethionine decarboxylase YPD4_2997 PF00892 EamA-like transporter family YPD4_2998 PF06062 Uncharacterised protein family (UPF0231) YPD4_2999 PF11791 Aconitate B N-terminal domain YPD4_2999 PF00330 Aconitase family (aconitate hydratase) YPD4_2999 PF06434 Aconitate hydratase 2 N-terminus YPD4_3001 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD4_3001 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPD4_3002 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPD4_3002 PF00364 Biotin-requiring enzyme YPD4_3002 PF02817 e3 binding domain YPD4_3003 PF00456 Transketolase, thiamine diphosphate binding domain YPD4_3003 PF17831 Pyruvate dehydrogenase E1 component middle domain YPD4_3004 PF00392 Bacterial regulatory proteins, gntR family YPD4_3004 PF07729 FCD domain YPD4_3005 PF00324 Amino acid permease YPD4_3006 PF17113 Regulatory signalling modulator protein AmpE YPD4_3007 PF01510 N-acetylmuramoyl-L-alanine amidase YPD4_3008 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain YPD4_3008 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain YPD4_3009 PF07963 Prokaryotic N-terminal methylation motif YPD4_3010 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain YPD4_3010 PF00437 Type II/IV secretion system protein YPD4_3011 PF00482 Type II secretion system (T2SS), protein F YPD4_3012 PF00478 IMP dehydrogenase / GMP reductase domain YPD4_3013 PF01121 Dephospho-CoA kinase YPD4_3014 PF07072 Cell division protein YPD4_3016 PF00665 Integrase core domain YPD4_3016 PF02796 Helix-turn-helix domain of resolvase YPD4_3017 PF01695 IstB-like ATP binding protein YPD4_3018 PF08676 MutL C terminal dimerisation domain YPD4_3018 PF01119 DNA mismatch repair protein, C-terminal domain YPD4_3020 PF00589 Phage integrase family YPD4_3020 PF13356 Arm DNA-binding domain YPD4_3021 PF03739 Lipopolysaccharide export system permease LptF/LptG YPD4_3022 PF03739 Lipopolysaccharide export system permease LptF/LptG YPD4_3023 PF03739 Lipopolysaccharide export system permease LptF/LptG YPD4_3024 PF00883 Cytosol aminopeptidase family, catalytic domain YPD4_3024 PF02789 Cytosol aminopeptidase family, N-terminal domain YPD4_3025 PF04364 DNA polymerase III chi subunit, HolC YPD4_3026 PF08264 Anticodon-binding domain of tRNA YPD4_3026 PF10458 Valyl tRNA synthetase tRNA binding arm YPD4_3026 PF00133 tRNA synthetases class I (I, L, M and V) YPD4_3027 PF00583 Acetyltransferase (GNAT) family YPD4_3028 PF06877 Regulator of ribonuclease activity B YPD4_3029 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPD4_3029 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPD4_3030 PF04074 YhcH/YjgK/YiaL YPD4_3033 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_3034 PF12911 N-terminal TM domain of oligopeptide transport permease C YPD4_3034 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_3035 PF00005 ABC transporter YPD4_3035 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPD4_3036 PF00005 ABC transporter YPD4_3036 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPD4_3037 PF13597 Anaerobic ribonucleoside-triphosphate reductase YPD4_3037 PF03477 ATP cone domain YPD4_3039 PF00392 Bacterial regulatory proteins, gntR family YPD4_3039 PF07702 UTRA domain YPD4_3040 PF06754 Phosphonate metabolism protein PhnG YPD4_3041 PF05845 Bacterial phosphonate metabolism protein (PhnH) YPD4_3042 PF05861 Bacterial phosphonate metabolism protein (PhnI) YPD4_3043 PF06007 Phosphonate metabolism protein PhnJ YPD4_3044 PF00005 ABC transporter YPD4_3045 PF00005 ABC transporter YPD4_3046 PF07969 Amidohydrolase family YPD4_3048 PF12706 Beta-lactamase superfamily domain YPD4_3049 PF13460 NAD(P)H-binding YPD4_3052 PF17912 MalK OB fold domain YPD4_3052 PF00005 ABC transporter YPD4_3052 PF03459 TOBE domain YPD4_3053 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_3055 PF13416 Bacterial extracellular solute-binding protein YPD4_3058 PF13508 Acetyltransferase (GNAT) domain YPD4_3062 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPD4_3062 PF02321 Outer membrane efflux protein YPD4_3063 PF00873 AcrB/AcrD/AcrF family YPD4_3064 PF00529 HlyD membrane-fusion protein of T1SS YPD4_3064 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD4_3065 PF00296 Luciferase-like monooxygenase YPD4_3066 PF01381 Helix-turn-helix YPD4_3067 PF03880 DbpA RNA binding domain YPD4_3067 PF00270 DEAD/DEAH box helicase YPD4_3067 PF00271 Helicase conserved C-terminal domain YPD4_3067 PF12343 Cold shock protein DEAD box A YPD4_3068 PF07719 Tetratricopeptide repeat YPD4_3068 PF13181 Tetratricopeptide repeat YPD4_3069 PF01138 3' exoribonuclease family, domain 1 YPD4_3069 PF00575 S1 RNA binding domain YPD4_3069 PF03725 3' exoribonuclease family, domain 2 YPD4_3069 PF00013 KH domain YPD4_3069 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain YPD4_3070 PF13333 Integrase core domain YPD4_3070 PF00665 Integrase core domain YPD4_3070 PF13276 HTH-like domain YPD4_3078 PF10431 C-terminal, D2-small domain, of ClpB protein YPD4_3078 PF07724 AAA domain (Cdc48 subfamily) YPD4_3078 PF17871 AAA lid domain YPD4_3078 PF00004 ATPase family associated with various cellular activities (AAA) YPD4_3085 PF04717 Type VI secretion system, phage-baseplate injector YPD4_3088 PF14220 Domain of unknown function (DUF4329) YPD4_3088 PF03527 RHS protein YPD4_3088 PF05593 RHS Repeat YPD4_3091 PF04717 Type VI secretion system, phage-baseplate injector YPD4_3093 PF05593 RHS Repeat YPD4_3093 PF03527 RHS protein YPD4_3096 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPD4_3096 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPD4_3097 PF02311 AraC-like ligand binding domain YPD4_3097 PF12833 Helix-turn-helix domain YPD4_3098 PF05025 RbsD / FucU transport protein family YPD4_3099 PF00294 pfkB family carbohydrate kinase YPD4_3101 PF03358 NADPH-dependent FMN reductase YPD4_3102 PF09084 NMT1/THI5 like YPD4_3103 PF00296 Luciferase-like monooxygenase YPD4_3104 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_3105 PF00005 ABC transporter YPD4_3106 PF00860 Permease family YPD4_3107 PF00999 Sodium/hydrogen exchanger family YPD4_3109 PF03279 Bacterial lipid A biosynthesis acyltransferase YPD4_3111 PF00005 ABC transporter YPD4_3112 PF02653 Branched-chain amino acid transport system / permease component YPD4_3114 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD4_3114 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPD4_3115 PF00571 CBS domain YPD4_3115 PF01380 SIS domain YPD4_3116 PF02798 Glutathione S-transferase, N-terminal domain YPD4_3120 PF05433 Glycine zipper 2TM domain YPD4_3121 PF00753 Metallo-beta-lactamase superfamily YPD4_3122 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPD4_3122 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase YPD4_3123 PF02627 Carboxymuconolactone decarboxylase family YPD4_3124 PF07690 Major Facilitator Superfamily YPD4_3125 PF00083 Sugar (and other) transporter YPD4_3128 PF01207 Dihydrouridine synthase (Dus) YPD4_3130 PF00474 Sodium:solute symporter family YPD4_3131 PF00289 Biotin carboxylase, N-terminal domain YPD4_3131 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPD4_3131 PF02785 Biotin carboxylase C-terminal domain YPD4_3132 PF00364 Biotin-requiring enzyme YPD4_3133 PF01220 Dehydroquinase class II YPD4_3134 PF01794 Ferric reductase like transmembrane component YPD4_3135 PF00174 Oxidoreductase molybdopterin binding domain YPD4_3136 PF08240 Alcohol dehydrogenase GroES-like domain YPD4_3136 PF00107 Zinc-binding dehydrogenase YPD4_3137 PF00990 Diguanylate cyclase, GGDEF domain YPD4_3137 PF17157 Gammaproteobacterial periplasmic sensor domain YPD4_3137 PF00563 EAL domain YPD4_3139 PF04085 rod shape-determining protein MreC YPD4_3140 PF04093 rod shape-determining protein MreD YPD4_3141 PF02545 Maf-like protein YPD4_3142 PF00575 S1 RNA binding domain YPD4_3142 PF10150 Ribonuclease E/G family YPD4_3143 PF13116 Protein of unknown function YPD4_3143 PF13502 AsmA-like C-terminal region YPD4_3144 PF00795 Carbon-nitrogen hydrolase YPD4_3145 PF01523 Putative modulator of DNA gyrase YPD4_3146 PF18807 Tripartite Tc toxins repeat YPD4_3146 PF14431 YwqJ-like deaminase YPD4_3147 PF18807 Tripartite Tc toxins repeat YPD4_3147 PF05785 Rho-activating domain of cytotoxic necrotizing factor YPD4_3151 PF12255 Insecticide toxin TcdB middle/C-terminal region YPD4_3151 PF12256 Insecticide toxin TcdB middle/N-terminal region YPD4_3151 PF03534 Salmonella virulence plasmid 65kDa B protein YPD4_3152 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain YPD4_3152 PF18413 Neuraminidase-like domain YPD4_3156 PF03466 LysR substrate binding domain YPD4_3156 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_3157 PF13533 Biotin-lipoyl like YPD4_3158 PF04632 Fusaric acid resistance protein family YPD4_3159 PF00171 Aldehyde dehydrogenase family YPD4_3160 PF00171 Aldehyde dehydrogenase family YPD4_3162 PF04751 Protein of unknown function (DUF615) YPD4_3163 PF01523 Putative modulator of DNA gyrase YPD4_3165 PF07361 Cytochrome b562 YPD4_3166 PF14760 Rnk N-terminus YPD4_3166 PF01272 Transcription elongation factor, GreA/GreB, C-term YPD4_3167 PF00128 Alpha amylase, catalytic domain YPD4_3167 PF11941 Domain of unknown function (DUF3459) YPD4_3168 PF02378 Phosphotransferase system, EIIC YPD4_3168 PF00367 phosphotransferase system, EIIB YPD4_3169 PF00356 Bacterial regulatory proteins, lacI family YPD4_3171 PF01042 Endoribonuclease L-PSP YPD4_3172 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain YPD4_3172 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain YPD4_3173 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPD4_3173 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPD4_3174 PF03668 P-loop ATPase protein family YPD4_3175 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPD4_3176 PF00309 Sigma-54 factor, Activator interacting domain (AID) YPD4_3176 PF04963 Sigma-54 factor, core binding domain YPD4_3176 PF04552 Sigma-54, DNA binding domain YPD4_3177 PF00005 ABC transporter YPD4_3177 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPD4_3178 PF03968 OstA-like protein YPD4_3179 PF06835 Lipopolysaccharide-assembly, LptC-related YPD4_3181 PF00571 CBS domain YPD4_3181 PF01380 SIS domain YPD4_3182 PF01699 Sodium/calcium exchanger protein YPD4_3183 PF00005 ABC transporter YPD4_3184 PF02405 Permease MlaE YPD4_3185 PF02470 MlaD protein YPD4_3186 PF05494 MlaC protein YPD4_3187 PF13466 STAS domain YPD4_3188 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPD4_3189 PF13180 PDZ domain YPD4_3190 PF01797 Transposase IS200 like YPD4_3191 PF00595 PDZ domain YPD4_3191 PF13180 PDZ domain YPD4_3192 PF06295 Protein of unknown function (DUF1043) YPD4_3193 PF03969 AFG1-like ATPase YPD4_3194 PF00572 Ribosomal protein L13 YPD4_3195 PF00380 Ribosomal protein S9/S16 YPD4_3196 PF00043 Glutathione S-transferase, C-terminal domain YPD4_3196 PF02798 Glutathione S-transferase, N-terminal domain YPD4_3197 PF04386 Stringent starvation protein B YPD4_3199 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPD4_3199 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD4_3200 PF00310 Glutamine amidotransferases class-II YPD4_3200 PF01645 Conserved region in glutamate synthase YPD4_3200 PF04898 Glutamate synthase central domain YPD4_3200 PF01493 GXGXG motif YPD4_3201 PF16199 Radical_SAM C-terminal domain YPD4_3201 PF04055 Radical SAM superfamily YPD4_3202 PF01627 Hpt domain YPD4_3202 PF18415 Histidine kinase receptor ArcB trans-membrane domain YPD4_3202 PF00989 PAS fold YPD4_3202 PF00512 His Kinase A (phospho-acceptor) domain YPD4_3202 PF00072 Response regulator receiver domain YPD4_3202 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_3204 PF00912 Transglycosylase YPD4_3205 PF04972 BON domain YPD4_3206 PF13580 SIS domain YPD4_3207 PF02021 Uncharacterised protein family UPF0102 YPD4_3208 PF04348 LppC putative lipoprotein YPD4_3209 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPD4_3210 PF17954 Quercetinase C-terminal cupin domain YPD4_3210 PF02678 Pirin YPD4_3211 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_3211 PF03466 LysR substrate binding domain YPD4_3212 PF13409 Glutathione S-transferase, N-terminal domain YPD4_3213 PF01695 IstB-like ATP binding protein YPD4_3214 PF01695 IstB-like ATP binding protein YPD4_3215 PF00665 Integrase core domain YPD4_3215 PF02796 Helix-turn-helix domain of resolvase YPD4_3216 PF00326 Prolyl oligopeptidase family YPD4_3217 PF01250 Ribosomal protein S6 YPD4_3218 PF01281 Ribosomal protein L9, N-terminal domain YPD4_3218 PF03948 Ribosomal protein L9, C-terminal domain YPD4_3219 PF01797 Transposase IS200 like YPD4_3221 PF08525 Opacity-associated protein A N-terminal motif YPD4_3221 PF04225 Opacity-associated protein A LysM-like domain YPD4_3222 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPD4_3222 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPD4_3223 PF04405 Domain of Unknown function (DUF542) YPD4_3223 PF01814 Hemerythrin HHE cation binding domain YPD4_3224 PF02872 5'-nucleotidase, C-terminal domain YPD4_3224 PF00149 Calcineurin-like phosphoesterase YPD4_3225 PF00149 Calcineurin-like phosphoesterase YPD4_3225 PF02872 5'-nucleotidase, C-terminal domain YPD4_3226 PF00459 Inositol monophosphatase family YPD4_3227 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) YPD4_3228 PF01595 Cyclin M transmembrane N-terminal domain YPD4_3228 PF03471 Transporter associated domain YPD4_3228 PF00571 CBS domain YPD4_3229 PF01625 Peptide methionine sulfoxide reductase YPD4_3230 PF07244 Surface antigen variable number repeat YPD4_3230 PF17243 POTRA domain TamA domain 1 YPD4_3230 PF01103 Surface antigen YPD4_3231 PF04357 TamB, inner membrane protein subunit of TAM complex YPD4_3232 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like YPD4_3233 PF00719 Inorganic pyrophosphatase YPD4_3234 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain YPD4_3235 PF02875 Mur ligase family, glutamate ligase domain YPD4_3235 PF01225 Mur ligase family, catalytic domain YPD4_3235 PF08245 Mur ligase middle domain YPD4_3236 PF02863 Arginine repressor, C-terminal domain YPD4_3236 PF01316 Arginine repressor, DNA binding domain YPD4_3237 PF00056 lactate/malate dehydrogenase, NAD binding domain YPD4_3237 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain YPD4_3239 PF00348 Polyprenyl synthetase YPD4_3240 PF00829 Ribosomal prokaryotic L21 protein YPD4_3241 PF00892 EamA-like transporter family YPD4_3242 PF01018 GTP1/OBG YPD4_3242 PF01926 50S ribosome-binding GTPase YPD4_3243 PF00512 His Kinase A (phospho-acceptor) domain YPD4_3243 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_3243 PF00672 HAMP domain YPD4_3244 PF00072 Response regulator receiver domain YPD4_3244 PF00486 Transcriptional regulatory protein, C terminal YPD4_3245 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family YPD4_3246 PF03449 Transcription elongation factor, N-terminal YPD4_3246 PF01272 Transcription elongation factor, GreA/GreB, C-term YPD4_3247 PF01985 CRS1 / YhbY (CRM) domain YPD4_3248 PF01728 FtsJ-like methyltransferase YPD4_3249 PF00004 ATPase family associated with various cellular activities (AAA) YPD4_3249 PF17862 AAA+ lid domain YPD4_3249 PF06480 FtsH Extracellular YPD4_3249 PF01434 Peptidase family M41 YPD4_3250 PF00809 Pterin binding enzyme YPD4_3251 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPD4_3251 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPD4_3251 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPD4_3251 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPD4_3252 PF17384 RimP C-terminal SH3 domain YPD4_3252 PF02576 RimP N-terminal domain YPD4_3253 PF00575 S1 RNA binding domain YPD4_3253 PF08529 NusA N-terminal domain YPD4_3253 PF13184 NusA-like KH domain YPD4_3254 PF08364 Bacterial translation initiation factor IF-2 associated region YPD4_3254 PF04760 Translation initiation factor IF-2, N-terminal region YPD4_3254 PF11987 Translation-initiation factor 2 YPD4_3254 PF00009 Elongation factor Tu GTP binding domain YPD4_3254 PF03144 Elongation factor Tu domain 2 YPD4_3255 PF02033 Ribosome-binding factor A YPD4_3256 PF01509 TruB family pseudouridylate synthase (N terminal domain) YPD4_3256 PF16198 tRNA pseudouridylate synthase B C-terminal domain YPD4_3256 PF09157 Pseudouridine synthase II TruB, C-terminal YPD4_3258 PF13333 Integrase core domain YPD4_3258 PF13276 HTH-like domain YPD4_3258 PF00665 Integrase core domain YPD4_3262 PF05638 Type VI secretion system effector, Hcp YPD4_3263 PF07148 Maltose operon periplasmic protein precursor (MalM) YPD4_3264 PF02264 LamB porin YPD4_3265 PF17912 MalK OB fold domain YPD4_3265 PF00005 ABC transporter YPD4_3266 PF01547 Bacterial extracellular solute-binding protein YPD4_3267 PF14785 Maltose transport system permease protein MalF P2 domain YPD4_3267 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_3268 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_3269 PF06146 Phosphate-starvation-inducible E YPD4_3270 PF00342 Phosphoglucose isomerase YPD4_3271 PF00696 Amino acid kinase family YPD4_3271 PF01842 ACT domain YPD4_3272 PF08479 POTRA domain, ShlB-type YPD4_3272 PF17287 POTRA domain YPD4_3272 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPD4_3273 PF08479 POTRA domain, ShlB-type YPD4_3273 PF17287 POTRA domain YPD4_3273 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPD4_3274 PF13332 Hemagglutinin repeat YPD4_3274 PF05860 haemagglutination activity domain YPD4_3275 PF00809 Pterin binding enzyme YPD4_3275 PF02310 B12 binding domain YPD4_3275 PF02607 B12 binding domain YPD4_3275 PF02965 Vitamin B12 dependent methionine synthase, activation domain YPD4_3275 PF02574 Homocysteine S-methyltransferase YPD4_3276 PF09339 IclR helix-turn-helix domain YPD4_3276 PF01614 Bacterial transcriptional regulator YPD4_3277 PF09339 IclR helix-turn-helix domain YPD4_3277 PF01614 Bacterial transcriptional regulator YPD4_3278 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) YPD4_3279 PF00463 Isocitrate lyase family YPD4_3280 PF01274 Malate synthase YPD4_3281 PF04204 Homoserine O-succinyltransferase YPD4_3282 PF01808 AICARFT/IMPCHase bienzyme YPD4_3282 PF02142 MGS-like domain YPD4_3283 PF02844 Phosphoribosylglycinamide synthetase, N domain YPD4_3283 PF02843 Phosphoribosylglycinamide synthetase, C domain YPD4_3283 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YPD4_3284 PF07356 Protein of unknown function (DUF1481) YPD4_3285 PF04222 Protein of unknown function (DUF416) YPD4_3286 PF04493 Endonuclease V YPD4_3287 PF01208 Uroporphyrinogen decarboxylase (URO-D) YPD4_3289 PF00293 NUDIX domain YPD4_3289 PF09297 NADH pyrophosphatase zinc ribbon domain YPD4_3290 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ YPD4_3291 PF13667 ThiC-associated domain YPD4_3291 PF01964 Radical SAM ThiC family YPD4_3292 PF02581 Thiamine monophosphate synthase YPD4_3293 PF00899 ThiF family YPD4_3294 PF05690 Thiazole biosynthesis protein ThiG YPD4_3295 PF04055 Radical SAM superfamily YPD4_3295 PF06968 Biotin and Thiamin Synthesis associated domain YPD4_3296 PF01797 Transposase IS200 like YPD4_3297 PF04998 RNA polymerase Rpb1, domain 5 YPD4_3297 PF05000 RNA polymerase Rpb1, domain 4 YPD4_3297 PF00623 RNA polymerase Rpb1, domain 2 YPD4_3297 PF04983 RNA polymerase Rpb1, domain 3 YPD4_3297 PF04997 RNA polymerase Rpb1, domain 1 YPD4_3298 PF04563 RNA polymerase beta subunit YPD4_3298 PF04565 RNA polymerase Rpb2, domain 3 YPD4_3298 PF04561 RNA polymerase Rpb2, domain 2 YPD4_3298 PF04560 RNA polymerase Rpb2, domain 7 YPD4_3298 PF10385 RNA polymerase beta subunit external 1 domain YPD4_3298 PF00562 RNA polymerase Rpb2, domain 6 YPD4_3299 PF00542 Ribosomal protein L7/L12 C-terminal domain YPD4_3299 PF16320 Ribosomal protein L7/L12 dimerisation domain YPD4_3300 PF00466 Ribosomal protein L10 YPD4_3301 PF00687 Ribosomal protein L1p/L10e family YPD4_3302 PF00298 Ribosomal protein L11, RNA binding domain YPD4_3302 PF03946 Ribosomal protein L11, N-terminal domain YPD4_3303 PF02357 Transcription termination factor nusG YPD4_3303 PF00467 KOW motif YPD4_3304 PF00009 Elongation factor Tu GTP binding domain YPD4_3304 PF03143 Elongation factor Tu C-terminal domain YPD4_3304 PF03144 Elongation factor Tu domain 2 YPD4_3305 PF01695 IstB-like ATP binding protein YPD4_3306 PF02796 Helix-turn-helix domain of resolvase YPD4_3306 PF00665 Integrase core domain YPD4_3307 PF13673 Acetyltransferase (GNAT) domain YPD4_3308 PF00485 Phosphoribulokinase / Uridine kinase family YPD4_3309 PF03099 Biotin/lipoate A/B protein ligase family YPD4_3309 PF02237 Biotin protein ligase C terminal domain YPD4_3309 PF08279 HTH domain YPD4_3310 PF01565 FAD binding domain YPD4_3310 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain YPD4_3311 PF02386 Cation transport protein YPD4_3312 PF01205 Uncharacterized protein family UPF0029 YPD4_3312 PF09186 Domain of unknown function (DUF1949) YPD4_3314 PF00557 Metallopeptidase family M24 YPD4_3315 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPD4_3315 PF00378 Enoyl-CoA hydratase/isomerase YPD4_3315 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPD4_3316 PF00108 Thiolase, N-terminal domain YPD4_3316 PF02803 Thiolase, C-terminal domain YPD4_3317 PF00175 Oxidoreductase NAD-binding domain YPD4_3317 PF00970 Oxidoreductase FAD-binding domain YPD4_3318 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YPD4_3319 PF02357 Transcription termination factor nusG YPD4_3320 PF00490 Delta-aminolevulinic acid dehydratase YPD4_3321 PF01026 TatD related DNase YPD4_3322 PF01695 IstB-like ATP binding protein YPD4_3323 PF00665 Integrase core domain YPD4_3323 PF02796 Helix-turn-helix domain of resolvase YPD4_3324 PF01026 TatD related DNase YPD4_3325 PF00902 Sec-independent protein translocase protein (TatC) YPD4_3327 PF03109 ABC1 family YPD4_3328 PF02036 SCP-2 sterol transfer family YPD4_3329 PF01209 ubiE/COQ5 methyltransferase family YPD4_3330 PF02646 RmuC family YPD4_3331 PF09335 SNARE associated Golgi protein YPD4_3332 PF13722 5TM C-terminal transporter carbon starvation CstA YPD4_3332 PF02554 Carbon starvation protein CstA YPD4_3334 PF01048 Phosphorylase superfamily YPD4_3335 PF01738 Dienelactone hydrolase family YPD4_3336 PF01717 Cobalamin-independent synthase, Catalytic domain YPD4_3336 PF08267 Cobalamin-independent synthase, N-terminal domain YPD4_3337 PF03466 LysR substrate binding domain YPD4_3337 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_3338 PF03547 Membrane transport protein YPD4_3339 PF03009 Glycerophosphoryl diester phosphodiesterase family YPD4_3340 PF17912 MalK OB fold domain YPD4_3340 PF00005 ABC transporter YPD4_3341 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_3342 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_3343 PF13416 Bacterial extracellular solute-binding protein YPD4_3351 PF00005 ABC transporter YPD4_3352 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPD4_3352 PF00005 ABC transporter YPD4_3353 PF11862 Domain of unknown function (DUF3382) YPD4_3353 PF02653 Branched-chain amino acid transport system / permease component YPD4_3354 PF02653 Branched-chain amino acid transport system / permease component YPD4_3355 PF13458 Periplasmic binding protein YPD4_3356 PF12568 Acetyltransferase (GNAT) domain, PanZ YPD4_3357 PF01797 Transposase IS200 like YPD4_3358 PF00140 Sigma-70 factor, region 1.2 YPD4_3358 PF04542 Sigma-70 region 2 YPD4_3358 PF04545 Sigma-70, region 4 YPD4_3359 PF18075 FtsX extracellular domain YPD4_3359 PF02687 FtsX-like permease family YPD4_3360 PF00005 ABC transporter YPD4_3361 PF00448 SRP54-type protein, GTPase domain YPD4_3361 PF00448 SRP54-type protein, GTPase domain YPD4_3361 PF02881 SRP54-type protein, helical bundle domain YPD4_3361 PF02881 SRP54-type protein, helical bundle domain YPD4_3365 PF07947 YhhN family YPD4_3366 PF00403 Heavy-metal-associated domain YPD4_3367 PF01206 Sulfurtransferase TusA YPD4_3368 PF02592 Putative vitamin uptake transporter YPD4_3369 PF08786 DcrB YPD4_3370 PF02754 Cysteine-rich domain YPD4_3370 PF13183 4Fe-4S dicluster domain YPD4_3371 PF00890 FAD binding domain YPD4_3372 PF01266 FAD dependent oxidoreductase YPD4_3372 PF04324 BFD-like [2Fe-2S] binding domain YPD4_3373 PF03009 Glycerophosphoryl diester phosphodiesterase family YPD4_3376 PF12146 Serine aminopeptidase, S33 YPD4_3377 PF01810 LysE type translocator YPD4_3378 PF01810 LysE type translocator YPD4_3379 PF16124 RecQ zinc-binding YPD4_3379 PF00570 HRDC domain YPD4_3379 PF00270 DEAD/DEAH box helicase YPD4_3379 PF09382 RQC domain YPD4_3379 PF00271 Helicase conserved C-terminal domain YPD4_3380 PF02253 Phospholipase A1 YPD4_3381 PF03061 Thioesterase superfamily YPD4_3382 PF00892 EamA-like transporter family YPD4_3383 PF01544 CorA-like Mg2+ transporter protein YPD4_3384 PF09370 Phosphoenolpyruvate hydrolase-like YPD4_3388 PF13361 UvrD-like helicase C-terminal domain YPD4_3388 PF00580 UvrD/REP helicase N-terminal domain YPD4_3389 PF13419 Haloacid dehalogenase-like hydrolase YPD4_3390 PF02899 Phage integrase, N-terminal SAM-like domain YPD4_3390 PF00589 Phage integrase family YPD4_3391 PF04340 Protein of unknown function, DUF484 YPD4_3392 PF01678 Diaminopimelate epimerase YPD4_3393 PF01491 Frataxin-like domain YPD4_3394 PF01295 Adenylate cyclase, class-I YPD4_3394 PF12633 Adenylate cyclase NT domain YPD4_3395 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain YPD4_3395 PF03900 Porphobilinogen deaminase, C-terminal domain YPD4_3396 PF02602 Uroporphyrinogen-III synthase HemD YPD4_3397 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase YPD4_3398 PF07719 Tetratricopeptide repeat YPD4_3398 PF07219 HemY protein N-terminus YPD4_3400 PF00324 Amino acid permease YPD4_3401 PF03808 Glycosyl transferase WecB/TagA/CpsF family YPD4_3402 PF06899 WzyE protein, O-antigen assembly polymerase YPD4_3403 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 YPD4_3404 PF01943 Polysaccharide biosynthesis protein YPD4_3405 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPD4_3407 PF00483 Nucleotidyl transferase YPD4_3408 PF16363 GDP-mannose 4,6 dehydratase YPD4_3409 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPD4_3409 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPD4_3409 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPD4_3410 PF02350 UDP-N-acetylglucosamine 2-epimerase YPD4_3411 PF02706 Chain length determinant protein YPD4_3412 PF00953 Glycosyl transferase family 4 YPD4_3413 PF07497 Rho termination factor, RNA-binding domain YPD4_3413 PF07498 Rho termination factor, N-terminal domain YPD4_3413 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPD4_3414 PF00085 Thioredoxin YPD4_3415 PF00270 DEAD/DEAH box helicase YPD4_3415 PF00271 Helicase conserved C-terminal domain YPD4_3416 PF02541 Ppx/GppA phosphatase family YPD4_3417 PF13361 UvrD-like helicase C-terminal domain YPD4_3417 PF00580 UvrD/REP helicase N-terminal domain YPD4_3419 PF00872 Transposase, Mutator family YPD4_3421 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD4_3421 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD4_3422 PF00577 Outer membrane usher protein YPD4_3422 PF13954 PapC N-terminal domain YPD4_3422 PF13953 PapC C-terminal domain YPD4_3424 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD4_3424 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD4_3426 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain YPD4_3426 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain YPD4_3427 PF03466 LysR substrate binding domain YPD4_3427 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_3432 PF00585 C-terminal regulatory domain of Threonine dehydratase YPD4_3432 PF00291 Pyridoxal-phosphate dependent enzyme YPD4_3433 PF00920 Dehydratase family YPD4_3434 PF01063 Amino-transferase class IV YPD4_3435 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPD4_3435 PF00205 Thiamine pyrophosphate enzyme, central domain YPD4_3435 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPD4_3436 PF01078 Magnesium chelatase, subunit ChlI YPD4_3436 PF13335 Magnesium chelatase, subunit ChlI C-terminal YPD4_3437 PF04219 Protein of unknown function, DUF YPD4_3438 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_3438 PF03466 LysR substrate binding domain YPD4_3439 PF02653 Branched-chain amino acid transport system / permease component YPD4_3440 PF02653 Branched-chain amino acid transport system / permease component YPD4_3441 PF00005 ABC transporter YPD4_3442 PF13407 Periplasmic binding protein domain YPD4_3443 PF01177 Asp/Glu/Hydantoin racemase YPD4_3444 PF07715 TonB-dependent Receptor Plug Domain YPD4_3444 PF00593 TonB dependent receptor YPD4_3445 PF05958 tRNA (Uracil-5-)-methyltransferase YPD4_3446 PF07226 Protein of unknown function (DUF1422) YPD4_3447 PF00440 Bacterial regulatory proteins, tetR family YPD4_3448 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD4_3448 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPD4_3449 PF03466 LysR substrate binding domain YPD4_3449 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_3450 PF00462 Glutaredoxin YPD4_3450 PF08534 Redoxin YPD4_3451 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD4_3451 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPD4_3452 PF03544 Gram-negative bacterial TonB protein C-terminal YPD4_3453 PF00529 HlyD membrane-fusion protein of T1SS YPD4_3454 PF00664 ABC transporter transmembrane region YPD4_3454 PF00005 ABC transporter YPD4_3456 PF07715 TonB-dependent Receptor Plug Domain YPD4_3456 PF00593 TonB dependent receptor YPD4_3457 PF00206 Lyase YPD4_3457 PF14698 Argininosuccinate lyase C-terminal YPD4_3458 PF00696 Amino acid kinase family YPD4_3459 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPD4_3459 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPD4_3460 PF01546 Peptidase family M20/M25/M40 YPD4_3460 PF07687 Peptidase dimerisation domain YPD4_3461 PF00311 Phosphoenolpyruvate carboxylase YPD4_3463 PF13276 HTH-like domain YPD4_3463 PF13333 Integrase core domain YPD4_3463 PF00665 Integrase core domain YPD4_3465 PF16901 C-terminal domain of alpha-glycerophosphate oxidase YPD4_3465 PF01266 FAD dependent oxidoreductase YPD4_3466 PF00343 Carbohydrate phosphorylase YPD4_3467 PF08323 Starch synthase catalytic domain YPD4_3467 PF00534 Glycosyl transferases group 1 YPD4_3468 PF00483 Nucleotidyl transferase YPD4_3469 PF00128 Alpha amylase, catalytic domain YPD4_3469 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPD4_3469 PF18390 Glycogen debranching enzyme C-terminal domain YPD4_3470 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPD4_3470 PF00128 Alpha amylase, catalytic domain YPD4_3470 PF02806 Alpha amylase, C-terminal all-beta domain YPD4_3471 PF06580 Histidine kinase YPD4_3471 PF07694 5TMR of 5TMR-LYT YPD4_3472 PF02369 Bacterial Ig-like domain (group 1) YPD4_3472 PF11924 Inverse autotransporter, beta-domain YPD4_3472 PF07979 Intimin C-type lectin domain YPD4_3472 PF09134 Invasin, domain 3 YPD4_3473 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPD4_3473 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPD4_3474 PF01914 MarC family integral membrane protein YPD4_3476 PF01202 Shikimate kinase YPD4_3477 PF02447 GntP family permease YPD4_3478 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPD4_3478 PF00356 Bacterial regulatory proteins, lacI family YPD4_3479 PF17954 Quercetinase C-terminal cupin domain YPD4_3479 PF02678 Pirin YPD4_3480 PF00072 Response regulator receiver domain YPD4_3480 PF00486 Transcriptional regulatory protein, C terminal YPD4_3482 PF01116 Fructose-bisphosphate aldolase class-II YPD4_3484 PF13407 Periplasmic binding protein domain YPD4_3485 PF02653 Branched-chain amino acid transport system / permease component YPD4_3486 PF00005 ABC transporter YPD4_3487 PF00072 Response regulator receiver domain YPD4_3487 PF13188 PAS domain YPD4_3487 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_3487 PF08448 PAS fold YPD4_3487 PF00512 His Kinase A (phospho-acceptor) domain YPD4_3489 PF01384 Phosphate transporter family YPD4_3491 PF10625 Universal stress protein B (UspB) YPD4_3492 PF00582 Universal stress protein family YPD4_3493 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YPD4_3493 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YPD4_3494 PF00413 Matrixin YPD4_3494 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) YPD4_3494 PF08548 Peptidase M10 serralysin C terminal YPD4_3495 PF04445 Putative SAM-dependent methyltransferase YPD4_3496 PF01432 Peptidase family M3 YPD4_3497 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ YPD4_3498 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPD4_3498 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD4_3499 PF17853 GGDEF-like domain YPD4_3499 PF05651 Putative sugar diacid recognition YPD4_3499 PF13556 PucR C-terminal helix-turn-helix domain YPD4_3500 PF02447 GntP family permease YPD4_3501 PF02595 Glycerate kinase family YPD4_3506 PF03631 Virulence factor BrkB YPD4_3507 PF02611 CDP-diacylglycerol pyrophosphatase YPD4_3508 PF05170 AsmA family YPD4_3509 PF00563 EAL domain YPD4_3510 PF00294 pfkB family carbohydrate kinase YPD4_3511 PF00675 Insulinase (Peptidase family M16) YPD4_3511 PF05193 Peptidase M16 inactive domain YPD4_3512 PF00375 Sodium:dicarboxylate symporter family YPD4_3514 PF06917 Periplasmic pectate lyase YPD4_3515 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPD4_3516 PF00672 HAMP domain YPD4_3516 PF17154 Gammaproteobacterial periplasmic sensor domain YPD4_3516 PF00563 EAL domain YPD4_3516 PF00990 Diguanylate cyclase, GGDEF domain YPD4_3517 PF01270 Glycosyl hydrolases family 8 YPD4_3518 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPD4_3518 PF00005 ABC transporter YPD4_3519 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPD4_3519 PF00005 ABC transporter YPD4_3520 PF12911 N-terminal TM domain of oligopeptide transport permease C YPD4_3520 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_3521 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_3522 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPD4_3523 PF08479 POTRA domain, ShlB-type YPD4_3523 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPD4_3523 PF17287 POTRA domain YPD4_3525 PF07690 Major Facilitator Superfamily YPD4_3526 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_3526 PF07730 Histidine kinase YPD4_3526 PF05231 MASE1 YPD4_3527 PF01695 IstB-like ATP binding protein YPD4_3528 PF00665 Integrase core domain YPD4_3528 PF02796 Helix-turn-helix domain of resolvase YPD4_3529 PF05231 MASE1 YPD4_3529 PF07730 Histidine kinase YPD4_3529 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_3530 PF00196 Bacterial regulatory proteins, luxR family YPD4_3530 PF00072 Response regulator receiver domain YPD4_3531 PF08019 Phosphoethanolamine transferase EptA/EptB YPD4_3531 PF00884 Sulfatase YPD4_3532 PF12146 Serine aminopeptidase, S33 YPD4_3533 PF00324 Amino acid permease YPD4_3534 PF00221 Aromatic amino acid lyase YPD4_3535 PF17391 Urocanase N-terminal domain YPD4_3535 PF17392 Urocanase C-terminal domain YPD4_3535 PF01175 Urocanase Rossmann-like domain YPD4_3536 PF00291 Pyridoxal-phosphate dependent enzyme YPD4_3537 PF00156 Phosphoribosyl transferase domain YPD4_3540 PF01497 Periplasmic binding protein YPD4_3541 PF01032 FecCD transport family YPD4_3542 PF01032 FecCD transport family YPD4_3543 PF00005 ABC transporter YPD4_3547 PF00589 Phage integrase family YPD4_3547 PF13356 Arm DNA-binding domain YPD4_3547 PF14659 Phage integrase, N-terminal SAM-like domain YPD4_3548 PF12833 Helix-turn-helix domain YPD4_3549 PF02653 Branched-chain amino acid transport system / permease component YPD4_3550 PF00005 ABC transporter YPD4_3551 PF13407 Periplasmic binding protein domain YPD4_3553 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPD4_3553 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD4_3555 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD4_3555 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD4_3556 PF13953 PapC C-terminal domain YPD4_3556 PF13954 PapC N-terminal domain YPD4_3556 PF00577 Outer membrane usher protein YPD4_3557 PF00577 Outer membrane usher protein YPD4_3557 PF13953 PapC C-terminal domain YPD4_3557 PF13954 PapC N-terminal domain YPD4_3558 PF00419 Fimbrial protein YPD4_3559 PF01757 Acyltransferase family YPD4_3561 PF13333 Integrase core domain YPD4_3561 PF00665 Integrase core domain YPD4_3561 PF13276 HTH-like domain YPD4_3562 PF07690 Major Facilitator Superfamily YPD4_3565 PF13700 Domain of unknown function (DUF4158) YPD4_3565 PF01526 Tn3 transposase DDE domain YPD4_3566 PF09106 Elongation factor SelB, winged helix YPD4_3566 PF03144 Elongation factor Tu domain 2 YPD4_3566 PF00009 Elongation factor Tu GTP binding domain YPD4_3566 PF09107 Elongation factor SelB, winged helix YPD4_3567 PF03841 L-seryl-tRNA selenium transferase YPD4_3567 PF12390 Selenocysteine synthase N terminal YPD4_3568 PF04216 Protein involved in formate dehydrogenase formation YPD4_3569 PF01292 Prokaryotic cytochrome b561 YPD4_3570 PF09163 Formate dehydrogenase N, transmembrane YPD4_3570 PF13247 4Fe-4S dicluster domain YPD4_3571 PF00384 Molybdopterin oxidoreductase YPD4_3571 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPD4_3571 PF01568 Molydopterin dinucleotide binding domain YPD4_3572 PF00384 Molybdopterin oxidoreductase YPD4_3572 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPD4_3572 PF01568 Molydopterin dinucleotide binding domain YPD4_3573 PF02634 FdhD/NarQ family YPD4_3574 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPD4_3574 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPD4_3575 PF00672 HAMP domain YPD4_3575 PF02203 Tar ligand binding domain homologue YPD4_3575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPD4_3578 PF10928 Protein of unknown function (DUF2810) YPD4_3579 PF05068 Mannitol repressor YPD4_3580 PF08125 Mannitol dehydrogenase C-terminal domain YPD4_3580 PF01232 Mannitol dehydrogenase Rossmann domain YPD4_3583 PF11254 Protein of unknown function (DUF3053) YPD4_3584 PF05746 DALR anticodon binding domain YPD4_3584 PF02092 Glycyl-tRNA synthetase beta subunit YPD4_3585 PF02091 Glycyl-tRNA synthetase alpha subunit YPD4_3586 PF03352 Methyladenine glycosylase YPD4_3588 PF13488 Glycine zipper YPD4_3588 PF00691 OmpA family YPD4_3590 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPD4_3590 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPD4_3591 PF00128 Alpha amylase, catalytic domain YPD4_3593 PF00155 Aminotransferase class I and II YPD4_3594 PF02080 TrkA-C domain YPD4_3594 PF06826 Predicted Permease Membrane Region YPD4_3595 PF00011 Hsp20/alpha crystallin family YPD4_3596 PF00011 Hsp20/alpha crystallin family YPD4_3597 PF07119 Protein of unknown function (DUF1375) YPD4_3598 PF07676 WD40-like Beta Propeller Repeat YPD4_3598 PF12566 Protein of unknown function (DUF3748) YPD4_3599 PF07676 WD40-like Beta Propeller Repeat YPD4_3599 PF12566 Protein of unknown function (DUF3748) YPD4_3600 PF13291 ACT domain YPD4_3600 PF00291 Pyridoxal-phosphate dependent enzyme YPD4_3601 PF02423 Ornithine cyclodeaminase/mu-crystallin family YPD4_3603 PF13276 HTH-like domain YPD4_3603 PF13333 Integrase core domain YPD4_3603 PF00665 Integrase core domain YPD4_3605 PF00204 DNA gyrase B YPD4_3605 PF00986 DNA gyrase B subunit, carboxyl terminus YPD4_3605 PF18053 DNA gyrase B subunit insert domain YPD4_3605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_3605 PF01751 Toprim domain YPD4_3606 PF02463 RecF/RecN/SMC N terminal domain YPD4_3607 PF02768 DNA polymerase III beta subunit, C-terminal domain YPD4_3607 PF02767 DNA polymerase III beta subunit, central domain YPD4_3607 PF00712 DNA polymerase III beta subunit, N-terminal domain YPD4_3608 PF11638 DnaA N-terminal domain YPD4_3608 PF08299 Bacterial dnaA protein helix-turn-helix YPD4_3608 PF00308 Bacterial dnaA protein YPD4_3609 PF00308 Bacterial dnaA protein YPD4_3609 PF08299 Bacterial dnaA protein helix-turn-helix YPD4_3609 PF11638 DnaA N-terminal domain YPD4_3610 PF14849 YidC periplasmic domain YPD4_3610 PF02096 60Kd inner membrane protein YPD4_3611 PF10396 GTP-binding protein TrmE N-terminus YPD4_3611 PF01926 50S ribosome-binding GTPase YPD4_3611 PF12631 MnmE helical domain YPD4_3612 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase YPD4_3612 PF07055 Enoyl reductase FAD binding domain YPD4_3612 PF12241 Trans-2-enoyl-CoA reductase catalytic region YPD4_3614 PF00860 Permease family YPD4_3615 PF13419 Haloacid dehalogenase-like hydrolase YPD4_3616 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_3617 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_3618 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD4_3620 PF01895 PhoU domain YPD4_3621 PF00005 ABC transporter YPD4_3622 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_3623 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_3624 PF12849 PBP superfamily domain YPD4_3625 PF01380 SIS domain YPD4_3626 PF12804 MobA-like NTP transferase domain YPD4_3626 PF00132 Bacterial transferase hexapeptide (six repeats) YPD4_3627 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain YPD4_3627 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain YPD4_3628 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPD4_3628 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPD4_3629 PF00231 ATP synthase YPD4_3630 PF00306 ATP synthase alpha/beta chain, C terminal domain YPD4_3630 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPD4_3630 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPD4_3631 PF00213 ATP synthase delta (OSCP) subunit YPD4_3632 PF00430 ATP synthase B/B' CF(0) YPD4_3633 PF00119 ATP synthase A chain YPD4_3634 PF03899 ATP synthase I chain YPD4_3635 PF02527 rRNA small subunit methyltransferase G YPD4_3636 PF01134 Glucose inhibited division protein A YPD4_3636 PF13932 GidA associated domain YPD4_pCD0001 PF13683 Integrase core domain YPD4_pCD0001 PF13276 HTH-like domain YPD4_pCD0002 PF05932 Tir chaperone protein (CesT) family YPD4_pCD0003 PF03545 Yersinia virulence determinant (YopE) YPD4_pCD0003 PF09020 YopE, N terminal YPD4_pCD0005 PF02195 ParB-like nuclease domain YPD4_pCD0005 PF18090 Centromere-binding protein HTH domain YPD4_pCD0006 PF13614 AAA domain YPD4_pCD0007 PF13276 HTH-like domain YPD4_pCD0007 PF00665 Integrase core domain YPD4_pCD0007 PF13333 Integrase core domain YPD4_pCD0009 PF05818 Enterobacterial TraT complement resistance protein YPD4_pCD0011 PF03543 Yersinia/Haemophilus virulence surface antigen YPD4_pCD0012 PF05932 Tir chaperone protein (CesT) family YPD4_pCD0015 PF12468 Type III secretion system leucine rich repeat protein YPD4_pCD0016 PF13610 DDE domain YPD4_pCD0017 PF05844 YopD protein YPD4_pCD0018 PF04888 Secretion system effector C (SseC) like family YPD4_pCD0019 PF07720 Tetratricopeptide repeat YPD4_pCD0020 PF04792 V antigen (LcrV) protein YPD4_pCD0021 PF09621 Type III secretion system regulator (LcrR) YPD4_pCD0022 PF00771 FHIPEP family YPD4_pCD0024 PF09474 Type III secretion system YscX (type_III_YscX) YPD4_pCD0026 PF07201 HrpJ-like domain YPD4_pCD0027 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPD4_pCD0027 PF18269 T3SS EscN ATPase C-terminal domain YPD4_pCD0027 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPD4_pCD0028 PF07321 Type III secretion protein YscO YPD4_pCD0029 PF02120 Flagellar hook-length control protein FliK YPD4_pCD0030 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPD4_pCD0031 PF00813 FliP family YPD4_pCD0032 PF01311 Bacterial export proteins, family 1 YPD4_pCD0033 PF01312 FlhB HrpN YscU SpaS Family YPD4_pCD0035 PF12833 Helix-turn-helix domain YPD4_pCD0035 PF02311 AraC-like ligand binding domain YPD4_pCD0036 PF05932 Tir chaperone protein (CesT) family YPD4_pCD0040 PF16697 Inner membrane component of T3SS, cytoplasmic domain YPD4_pCD0040 PF16693 Inner membrane component of T3SS, periplasmic domain YPD4_pCD0041 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) YPD4_pCD0042 PF09025 YopR, type III needle-polymerisation regulator YPD4_pCD0043 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI YPD4_pCD0044 PF01514 Secretory protein of YscJ/FliF family YPD4_pCD0045 PF06578 YOP proteins translocation protein K (YscK) YPD4_pCD0046 PF02108 Flagellar assembly protein FliH YPD4_pCD0047 PF09013 YopH, N-terminal YPD4_pCD0049 PF00102 Protein-tyrosine phosphatase YPD4_pCD0049 PF09013 YopH, N-terminal YPD4_pCD0050 PF13276 HTH-like domain YPD4_pCD0050 PF13683 Integrase core domain YPD4_pCD0052 PF00069 Protein kinase domain YPD4_pCD0052 PF09632 Rac1-binding domain YPD4_pCD0054 PF02387 IncFII RepA protein family YPD4_pCD0057 PF18272 single-stranded DNA binding TraI N-terminal subdomain YPD4_pCD0057 PF07057 DNA helicase TraI YPD4_pCD0057 PF18340 DNA relaxase TraI 2B/2B-like domain YPD4_pCD0057 PF08751 TrwC relaxase YPD4_pCD0058 PF03895 YadA-like membrane anchor domain YPD4_pCD0058 PF05658 Head domain of trimeric autotransporter adhesin YPD4_pCD0058 PF05662 Coiled stalk of trimeric autotransporter adhesin YPD4_pCD0060 PF13700 Domain of unknown function (DUF4158) YPD4_pCD0060 PF01526 Tn3 transposase DDE domain YPD4_pCD0061 PF00239 Resolvase, N terminal domain YPD4_pCD0061 PF02796 Helix-turn-helix domain of resolvase YPD4_pCD0064 PF13683 Integrase core domain YPD4_pCD0064 PF13276 HTH-like domain YPD4_pCD0066 PF01695 IstB-like ATP binding protein YPD4_pMT0001 PF02796 Helix-turn-helix domain of resolvase YPD4_pMT0001 PF00665 Integrase core domain YPD4_pMT0002 PF01695 IstB-like ATP binding protein YPD4_pMT0003 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YPD4_pMT0004 PF07484 Phage Tail Collar Domain YPD4_pMT0004 PF03335 Phage tail fibre repeat YPD4_pMT0004 PF08400 Prophage tail fibre N-terminal YPD4_pMT0004 PF07484 Phage Tail Collar Domain YPD4_pMT0004 PF03335 Phage tail fibre repeat YPD4_pMT0004 PF08400 Prophage tail fibre N-terminal YPD4_pMT0026 PF00664 ABC transporter transmembrane region YPD4_pMT0026 PF03412 Peptidase C39 family YPD4_pMT0026 PF00005 ABC transporter YPD4_pMT0027 PF17762 HTH domain found in ParB protein YPD4_pMT0027 PF02195 ParB-like nuclease domain YPD4_pMT0028 PF02195 ParB-like nuclease domain YPD4_pMT0028 PF17762 HTH domain found in ParB protein YPD4_pMT0029 PF17191 RecG wedge domain YPD4_pMT0029 PF00271 Helicase conserved C-terminal domain YPD4_pMT0029 PF00270 DEAD/DEAH box helicase YPD4_pMT0041 PF01051 Initiator Replication protein YPD4_pMT0046 PF00154 recA bacterial DNA recombination protein YPD4_pMT0047 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPD4_pMT0047 PF01367 5'-3' exonuclease, C-terminal SAM fold YPD4_pMT0052 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YPD4_pMT0052 PF14579 Helix-hairpin-helix motif YPD4_pMT0052 PF02811 PHP domain YPD4_pMT0052 PF07733 Bacterial DNA polymerase III alpha NTPase domain YPD4_pMT0054 PF11775 Cobalamin biosynthesis protein CobT VWA domain YPD4_pMT0054 PF06213 Cobalamin biosynthesis protein CobT YPD4_pMT0057 PF09255 Caf1 Capsule antigen YPD4_pMT0058 PF13953 PapC C-terminal domain YPD4_pMT0058 PF00577 Outer membrane usher protein YPD4_pMT0058 PF13954 PapC N-terminal domain YPD4_pMT0059 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD4_pMT0059 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD4_pMT0060 PF12833 Helix-turn-helix domain YPD4_pMT0060 PF06445 GyrI-like small molecule binding domain YPD4_pMT0061 PF00872 Transposase, Mutator family YPD4_pMT0062 PF01548 Transposase YPD4_pMT0062 PF02371 Transposase IS116/IS110/IS902 family YPD4_pMT0063 PF04754 Putative transposase, YhgA-like YPD4_pMT0064 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) YPD4_pMT0066 PF13091 PLD-like domain YPD4_pMT0067 PF04754 Putative transposase, YhgA-like YPD4_pMT0068 PF00239 Resolvase, N terminal domain YPD4_pMT0068 PF02796 Helix-turn-helix domain of resolvase YPD4_pMT0069 PF18607 ParA helix turn helix domain YPD4_pMT0069 PF13614 AAA domain YPD4_pMT0070 PF02195 ParB-like nuclease domain YPD4_pMT0070 PF08775 ParB family YPD4_pMT0072 PF01555 DNA methylase YPD4_pMT0073 PF07128 Protein of unknown function (DUF1380) YPD4_pMT0076 PF02195 ParB-like nuclease domain YPD4_pPCP0001 PF02796 Helix-turn-helix domain of resolvase YPD4_pPCP0001 PF00665 Integrase core domain YPD4_pPCP0002 PF01695 IstB-like ATP binding protein YPD4_pPCP0007 PF01278 Omptin family YPD4_pPCP0009 PF05973 Phage derived protein Gp49-like (DUF891)