YPD4_0001	PF00258	Flavodoxin
YPD4_0002	PF01037	AsnC family
YPD4_0002	PF13412	Winged helix-turn-helix DNA-binding
YPD4_0003	PF03590	Aspartate-ammonia ligase
YPD4_0004	PF05762	VWA domain containing CoxE-like protein
YPD4_0005	PF07728	AAA domain (dynein-related subfamily)
YPD4_0005	PF12592	Protein of unknown function (DUF3763)
YPD4_0006	PF02705	YPD4_0006
YPD4_0007	PF05025	RbsD / FucU transport protein family
YPD4_0008	PF00294	pfkB family carbohydrate kinase
YPD4_0009	PF07690	Major Facilitator Superfamily
YPD4_0010	PF00392	Bacterial regulatory proteins, gntR family
YPD4_0010	PF07729	FCD domain
YPD4_0011	PF00872	YPD4_0011
YPD4_0012	PF03205	Molybdopterin guanine dinucleotide synthesis protein B
YPD4_0013	PF12804	MobA-like NTP transferase domain
YPD4_0014	PF01636	Phosphotransferase enzyme family
YPD4_0015	PF01323	DSBA-like thioredoxin domain
YPD4_0016	PF00476	DNA polymerase family A
YPD4_0016	PF01367	5'-3' exonuclease, C-terminal SAM fold
YPD4_0016	PF01612	3'-5' exonuclease
YPD4_0016	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
YPD4_0017	PF01797	Transposase IS200 like
YPD4_0018	PF01926	50S ribosome-binding GTPase
YPD4_0019	PF04220	YPD4_0019
YPD4_0020	PF04055	Radical SAM superfamily
YPD4_0020	PF06969	HemN C-terminal domain
YPD4_0021	PF00072	Response regulator receiver domain
YPD4_0021	PF00158	Sigma-54 interaction domain
YPD4_0021	PF02954	Bacterial regulatory protein, Fis family
YPD4_0022	PF00512	His Kinase A (phospho-acceptor) domain
YPD4_0022	PF00989	PAS fold
YPD4_0022	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_0023	PF00120	Glutamine synthetase, catalytic domain
YPD4_0023	PF03951	Glutamine synthetase, beta-Grasp domain
YPD4_0024	PF00009	Elongation factor Tu GTP binding domain
YPD4_0024	PF00679	Elongation factor G C-terminus
YPD4_0024	PF03144	Elongation factor Tu domain 2
YPD4_0025	PF13419	Haloacid dehalogenase-like hydrolase
YPD4_0026	PF03631	YPD4_0026
YPD4_0027	PF02580	D-Tyr-tRNA(Tyr) deacylase
YPD4_0028	PF01695	IstB-like ATP binding protein
YPD4_0029	PF00665	Integrase core domain
YPD4_0029	PF02796	Helix-turn-helix domain of resolvase
YPD4_0030	PF00583	Acetyltransferase (GNAT) family
YPD4_0030	PF09500	Putative thioesterase (yiiD_Cterm)
YPD4_0032	PF00860	Permease family
YPD4_0033	PF00860	Permease family
YPD4_0034	PF03616	YPD4_0034
YPD4_0035	PF00270	DEAD/DEAH box helicase
YPD4_0035	PF00271	Helicase conserved C-terminal domain
YPD4_0035	PF17191	YPD4_0035
YPD4_0036	PF00588	SpoU rRNA Methylase family
YPD4_0036	PF12105	SpoU, rRNA methylase, C-terminal
YPD4_0037	PF02824	TGS domain
YPD4_0037	PF04607	Region found in RelA / SpoT proteins
YPD4_0037	PF13291	ACT domain
YPD4_0037	PF13328	HD domain
YPD4_0038	PF00625	Guanylate kinase
YPD4_0039	PF01653	NAD-dependent DNA ligase adenylation domain
YPD4_0039	PF03120	NAD-dependent DNA ligase OB-fold domain
YPD4_0040	PF03458	YPD4_0040
YPD4_0041	PF03755	YPD4_0041
YPD4_0041	PF08340	YPD4_0041
YPD4_0042	PF01138	3' exoribonuclease family, domain 1
YPD4_0042	PF03725	3' exoribonuclease family, domain 2
YPD4_0043	PF00156	Phosphoribosyl transferase domain
YPD4_0044	PF00440	Bacterial regulatory proteins, tetR family
YPD4_0045	PF00692	dUTPase
YPD4_0046	PF02441	Flavoprotein
YPD4_0046	PF04127	DNA / pantothenate metabolism flavoprotein
YPD4_0047	PF04002	RadC-like JAB domain
YPD4_0048	PF01149	Formamidopyrimidine-DNA glycosylase N-terminal domain
YPD4_0048	PF06827	Zinc finger found in FPG and IleRS
YPD4_0048	PF06831	Formamidopyrimidine-DNA glycosylase H2TH domain
YPD4_0049	PF01467	Cytidylyltransferase
YPD4_0050	PF00535	Glycosyl transferase family 2
YPD4_0051	PF00534	Glycosyl transferases group 1
YPD4_0051	PF04413	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
YPD4_0052	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
YPD4_0053	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
YPD4_0054	PF01370	NAD dependent epimerase/dehydratase family
YPD4_0055	PF00155	Aminotransferase class I and II
YPD4_0056	PF00107	Zinc-binding dehydrogenase
YPD4_0056	PF08240	Alcohol dehydrogenase GroES-like domain
YPD4_0057	PF04748	Divergent polysaccharide deacetylase
YPD4_0058	PF04748	Divergent polysaccharide deacetylase
YPD4_0059	PF01551	Peptidase family M23
YPD4_0060	PF01676	Metalloenzyme superfamily
YPD4_0060	PF06415	BPG-independent PGAM N-terminus (iPGM_N)
YPD4_0061	PF00581	Rhodanese-like domain
YPD4_0062	PF02556	Preprotein translocase subunit SecB
YPD4_0063	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
YPD4_0063	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
YPD4_0064	PF00132	Bacterial transferase hexapeptide (six repeats)
YPD4_0064	PF06426	Serine acetyltransferase, N-terminal
YPD4_0065	PF00588	SpoU rRNA Methylase family
YPD4_0066	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
YPD4_0066	PF02805	Metal binding domain of Ada
YPD4_0066	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
YPD4_0066	PF12833	Helix-turn-helix domain
YPD4_0067	PF00512	His Kinase A (phospho-acceptor) domain
YPD4_0067	PF00672	HAMP domain
YPD4_0067	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_0067	PF16527	YPD4_0067
YPD4_0068	PF00072	Response regulator receiver domain
YPD4_0068	PF00486	Transcriptional regulatory protein, C terminal
YPD4_0069	PF07813	LTXXQ motif family protein
YPD4_0070	PF04754	YPD4_0070
YPD4_0071	PF01545	Cation efflux family
YPD4_0071	PF16916	YPD4_0071
YPD4_0072	PF00365	Phosphofructokinase
YPD4_0073	PF13531	Bacterial extracellular solute-binding protein
YPD4_0074	PF13531	Bacterial extracellular solute-binding protein
YPD4_0075	PF00939	Sodium:sulfate symporter transmembrane region
YPD4_0076	PF03737	Demethylmenaquinone methyltransferase
YPD4_0077	PF02585	GlcNAc-PI de-N-acetylase
YPD4_0078	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_0078	PF03466	LysR substrate binding domain
YPD4_0079	PF00121	Triosephosphate isomerase
YPD4_0080	PF07305	YPD4_0080
YPD4_0081	PF05656	YPD4_0081
YPD4_0082	PF00175	Oxidoreductase NAD-binding domain
YPD4_0082	PF00970	Oxidoreductase FAD-binding domain
YPD4_0083	PF03320	Bacterial fructose-1,6-bisphosphatase, glpX-encoded
YPD4_0084	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPD4_0084	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPD4_0085	PF00230	Major intrinsic protein
YPD4_0086	PF01797	Transposase IS200 like
YPD4_0087	PF00005	ABC transporter
YPD4_0087	PF00664	ABC transporter transmembrane region
YPD4_0087	PF03412	Peptidase C39 family
YPD4_0088	PF13437	HlyD family secretion protein
YPD4_0089	PF14016	YPD4_0089
YPD4_0090	PF03737	Demethylmenaquinone methyltransferase
YPD4_0091	PF01040	UbiA prenyltransferase family
YPD4_0092	PF00004	ATPase family associated with various cellular activities (AAA)
YPD4_0092	PF07724	AAA domain (Cdc48 subfamily)
YPD4_0092	PF10431	C-terminal, D2-small domain, of ClpB protein
YPD4_0093	PF00227	Proteasome subunit
YPD4_0094	PF05036	Sporulation related domain
YPD4_0095	PF00356	Bacterial regulatory proteins, lacI family
YPD4_0095	PF13377	Periplasmic binding protein-like domain
YPD4_0096	PF00270	DEAD/DEAH box helicase
YPD4_0096	PF00271	Helicase conserved C-terminal domain
YPD4_0097	PF05360	YPD4_0097
YPD4_0098	PF01340	Met Apo-repressor, MetJ
YPD4_0099	PF01053	Cys/Met metabolism PLP-dependent enzyme
YPD4_0100	PF00696	Amino acid kinase family
YPD4_0100	PF00742	Homoserine dehydrogenase
YPD4_0100	PF03447	Homoserine dehydrogenase, NAD binding domain
YPD4_0101	PF02219	Methylenetetrahydrofolate reductase
YPD4_0102	PF00665	Integrase core domain
YPD4_0102	PF13276	YPD4_0102
YPD4_0103	PF13518	Helix-turn-helix domain
YPD4_0104	PF00455	YPD4_0104
YPD4_0104	PF08220	DeoR-like helix-turn-helix domain
YPD4_0105	PF01694	Rhomboid family
YPD4_0105	PF12122	Protein of unknown function (DUF3582)
YPD4_0106	PF00581	Rhodanese-like domain
YPD4_0107	PF00196	Bacterial regulatory proteins, luxR family
YPD4_0109	PF00343	Carbohydrate phosphorylase
YPD4_0110	PF02446	4-alpha-glucanotransferase
YPD4_0111	PF01106	NifU-like domain
YPD4_0111	PF01521	Iron-sulphur cluster biosynthesis
YPD4_0112	PF00156	Phosphoribosyl transferase domain
YPD4_0113	PF00561	alpha/beta hydrolase fold
YPD4_0114	PF02421	Ferrous iron transport protein B
YPD4_0114	PF07664	YPD4_0114
YPD4_0114	PF07670	Nucleoside recognition
YPD4_0115	PF00575	S1 RNA binding domain
YPD4_0115	PF09371	Tex-like protein N-terminal domain
YPD4_0115	PF12836	Helix-hairpin-helix motif
YPD4_0115	PF16921	YPD4_0115
YPD4_0116	PF01272	Transcription elongation factor, GreA/GreB, C-term
YPD4_0116	PF03449	Transcription elongation factor, N-terminal
YPD4_0117	PF00072	Response regulator receiver domain
YPD4_0117	PF00486	Transcriptional regulatory protein, C terminal
YPD4_0118	PF00512	His Kinase A (phospho-acceptor) domain
YPD4_0118	PF00672	HAMP domain
YPD4_0118	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_0119	PF01293	Phosphoenolpyruvate carboxykinase
YPD4_0120	PF01430	Hsp33 protein
YPD4_0121	PF01479	S4 domain
YPD4_0122	PF13419	Haloacid dehalogenase-like hydrolase
YPD4_0123	PF07095	Intracellular growth attenuator protein IgaA
YPD4_0124	PF00293	NUDIX domain
YPD4_0125	PF00905	Penicillin binding protein transpeptidase domain
YPD4_0125	PF00912	Transglycosylase
YPD4_0125	PF17092	YPD4_0125
YPD4_0126	PF11104	Type IV pilus assembly protein PilM;
YPD4_0127	PF05137	YPD4_0127
YPD4_0130	PF03958	Bacterial type II/III secretion system short domain
YPD4_0131	PF00263	YPD4_0131
YPD4_0132	PF01202	Shikimate kinase
YPD4_0133	PF01761	3-dehydroquinate synthase
YPD4_0134	PF05036	Sporulation related domain
YPD4_0135	PF02086	D12 class N6 adenine-specific DNA methyltransferase
YPD4_0136	PF00834	Ribulose-phosphate 3 epimerase family
YPD4_0137	PF13419	Haloacid dehalogenase-like hydrolase
YPD4_0138	PF00579	tRNA synthetases class I (W and Y)
YPD4_0139	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
YPD4_0139	PF10414	Sirohaem synthase dimerisation region
YPD4_0139	PF13241	Putative NAD(P)-binding
YPD4_0139	PF14824	Sirohaem biosynthesis protein central
YPD4_0140	PF01226	Formate/nitrite transporter
YPD4_0141	PF13806	Rieske-like [2Fe-2S] domain
YPD4_0142	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
YPD4_0142	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
YPD4_0142	PF04324	BFD-like [2Fe-2S] binding domain
YPD4_0142	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPD4_0143	PF07969	Amidohydrolase family
YPD4_0144	PF07690	Major Facilitator Superfamily
YPD4_0145	PF00593	TonB dependent receptor
YPD4_0145	PF07715	TonB-dependent Receptor Plug Domain
YPD4_0146	PF00356	Bacterial regulatory proteins, lacI family
YPD4_0146	PF13377	Periplasmic binding protein-like domain
YPD4_0147	PF02056	Family 4 glycosyl hydrolase
YPD4_0147	PF11975	Family 4 glycosyl hydrolase C-terminal domain
YPD4_0148	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
YPD4_0149	PF05872	YPD4_0149
YPD4_0150	PF00117	Glutamine amidotransferase class-I
YPD4_0151	PF00202	Aminotransferase class-III
YPD4_0152	PF12805	YPD4_0152
YPD4_0152	PF13515	YPD4_0152
YPD4_0153	PF00027	Cyclic nucleotide-binding domain
YPD4_0153	PF00325	Bacterial regulatory proteins, crp family
YPD4_0154	PF02566	OsmC-like protein
YPD4_0155	PF06836	YPD4_0155
YPD4_0156	PF00485	Phosphoribulokinase / Uridine kinase family
YPD4_0157	PF00561	alpha/beta hydrolase fold
YPD4_0158	PF01810	YPD4_0158
YPD4_0159	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
YPD4_0160	PF00005	ABC transporter
YPD4_0161	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_0162	PF02668	Taurine catabolism dioxygenase TauD, TfdA family
YPD4_0163	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
YPD4_0164	PF00535	Glycosyl transferase family 2
YPD4_0165	PF00005	ABC transporter
YPD4_0165	PF12848	ABC transporter
YPD4_0166	PF00005	ABC transporter
YPD4_0167	PF02525	Flavodoxin-like fold
YPD4_0168	PF00999	Sodium/hydrogen exchanger family
YPD4_0168	PF02254	TrkA-N domain
YPD4_0169	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
YPD4_0170	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
YPD4_0170	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
YPD4_0171	PF08348	YPD4_0171
YPD4_0171	PF13309	YPD4_0171
YPD4_0172	PF02635	DsrE/DsrF-like family
YPD4_0173	PF02635	DsrE/DsrF-like family
YPD4_0174	PF00164	Ribosomal protein S12/S23
YPD4_0175	PF00177	Ribosomal protein S7p/S5e
YPD4_0176	PF00009	Elongation factor Tu GTP binding domain
YPD4_0176	PF00679	Elongation factor G C-terminus
YPD4_0176	PF03144	Elongation factor Tu domain 2
YPD4_0176	PF03764	Elongation factor G, domain IV
YPD4_0176	PF14492	Elongation Factor G, domain II
YPD4_0177	PF00009	Elongation factor Tu GTP binding domain
YPD4_0177	PF03143	Elongation factor Tu C-terminal domain
YPD4_0177	PF03144	Elongation factor Tu domain 2
YPD4_0178	PF01797	Transposase IS200 like
YPD4_0179	PF00210	Ferritin-like domain
YPD4_0180	PF00338	Ribosomal protein S10p/S20e
YPD4_0181	PF00297	Ribosomal protein L3
YPD4_0182	PF00573	Ribosomal protein L4/L1 family
YPD4_0183	PF00276	Ribosomal protein L23
YPD4_0184	PF00181	Ribosomal Proteins L2, RNA binding domain
YPD4_0184	PF03947	Ribosomal Proteins L2, C-terminal domain
YPD4_0185	PF00237	Ribosomal protein L22p/L17e
YPD4_0186	PF00189	Ribosomal protein S3, C-terminal domain
YPD4_0186	PF07650	KH domain
YPD4_0187	PF00252	Ribosomal protein L16p/L10e
YPD4_0188	PF00238	Ribosomal protein L14p/L23e
YPD4_0189	PF00467	KOW motif
YPD4_0189	PF17136	YPD4_0189
YPD4_0190	PF00281	Ribosomal protein L5
YPD4_0190	PF00673	ribosomal L5P family C-terminus
YPD4_0191	PF00253	Ribosomal protein S14p/S29e
YPD4_0192	PF00410	Ribosomal protein S8
YPD4_0193	PF00347	Ribosomal protein L6
YPD4_0194	PF00861	Ribosomal L18p/L5e family
YPD4_0195	PF00333	Ribosomal protein S5, N-terminal domain
YPD4_0195	PF03719	Ribosomal protein S5, C-terminal domain
YPD4_0196	PF00828	Ribosomal protein L18e/L15
YPD4_0197	PF00344	SecY translocase
YPD4_0198	PF00416	Ribosomal protein S13/S18
YPD4_0199	PF00411	Ribosomal protein S11
YPD4_0200	PF00163	Ribosomal protein S4/S9 N-terminal domain
YPD4_0200	PF01479	S4 domain
YPD4_0201	PF01000	RNA polymerase Rpb3/RpoA insert domain
YPD4_0201	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
YPD4_0201	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
YPD4_0202	PF01196	Ribosomal protein L17
YPD4_0203	PF13411	MerR HTH family regulatory protein
YPD4_0204	PF01741	Large-conductance mechanosensitive channel, MscL
YPD4_0205	PF02080	TrkA-C domain
YPD4_0205	PF02254	TrkA-N domain
YPD4_0206	PF01029	NusB family
YPD4_0206	PF01189	NOL1/NOP2/sun family
YPD4_0207	PF00551	Formyl transferase
YPD4_0207	PF02911	Formyl transferase, C-terminal domain
YPD4_0208	PF01327	Polypeptide deformylase
YPD4_0209	PF02481	DNA recombination-mediator protein A
YPD4_0210	PF04361	YPD4_0210
YPD4_0211	PF01396	YPD4_0211
YPD4_0212	PF01300	Telomere recombination
YPD4_0213	PF01488	Shikimate / quinate 5-dehydrogenase
YPD4_0213	PF08501	Shikimate dehydrogenase substrate binding domain
YPD4_0214	PF00132	Bacterial transferase hexapeptide (six repeats)
YPD4_0215	PF01695	IstB-like ATP binding protein
YPD4_0216	PF00665	Integrase core domain
YPD4_0216	PF02796	Helix-turn-helix domain of resolvase
YPD4_0217	PF12715	Abhydrolase family
YPD4_0218	PF00474	Sodium:solute symporter family
YPD4_0219	PF04341	YPD4_0219
YPD4_0220	PF00501	AMP-binding enzyme
YPD4_0220	PF13193	AMP-binding enzyme C-terminal domain
YPD4_0220	PF16177	YPD4_0220
YPD4_0221	PF00375	Sodium:dicarboxylate symporter family
YPD4_0222	PF00072	Response regulator receiver domain
YPD4_0222	PF00196	Bacterial regulatory proteins, luxR family
YPD4_0223	PF00072	Response regulator receiver domain
YPD4_0223	PF00512	His Kinase A (phospho-acceptor) domain
YPD4_0223	PF01627	Hpt domain
YPD4_0223	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_0224	PF00263	YPD4_0224
YPD4_0224	PF03958	Bacterial type II/III secretion system short domain
YPD4_0225	PF16693	YPD4_0225
YPD4_0226	PF12833	Helix-turn-helix domain
YPD4_0227	PF01514	Secretory protein of YscJ/FliF family
YPD4_0228	PF13327	YPD4_0228
YPD4_0229	PF06188	YPD4_0229
YPD4_0230	PF00771	FHIPEP family
YPD4_0231	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPD4_0231	PF02874	ATP synthase alpha/beta family, beta-barrel domain
YPD4_0234	PF01052	Surface presentation of antigens (SPOA)
YPD4_0235	PF00813	YPD4_0235
YPD4_0236	PF01311	YPD4_0236
YPD4_0237	PF01312	FlhB HrpN YscU SpaS Family
YPD4_0238	PF01312	FlhB HrpN YscU SpaS Family
YPD4_0239	PF04143	YPD4_0239
YPD4_0240	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_0240	PF03466	LysR substrate binding domain
YPD4_0242	PF01053	Cys/Met metabolism PLP-dependent enzyme
YPD4_0243	PF00005	ABC transporter
YPD4_0244	PF01032	FecCD transport family
YPD4_0245	PF01497	Periplasmic binding protein
YPD4_0246	PF05171	Haemin-degrading HemS
YPD4_0247	PF00593	TonB dependent receptor
YPD4_0248	PF07715	TonB-dependent Receptor Plug Domain
YPD4_0249	PF13460	NADH(P)-binding
YPD4_0250	PF06228	Haem utilisation ChuX/HutX
YPD4_0251	PF04055	Radical SAM superfamily
YPD4_0252	PF02219	Methylenetetrahydrofolate reductase
YPD4_0254	PF15617	YPD4_0254
YPD4_0255	PF11202	YPD4_0255
YPD4_0255	PF15608	YPD4_0255
YPD4_0257	PF12500	YPD4_0257
YPD4_0257	PF15609	YPD4_0257
YPD4_0258	PF15632	YPD4_0258
YPD4_0259	PF02342	TerD domain
YPD4_0260	PF02342	TerD domain
YPD4_0262	PF05099	Tellurite resistance protein TerB
YPD4_0263	PF03741	YPD4_0263
YPD4_0264	PF02342	TerD domain
YPD4_0265	PF02342	TerD domain
YPD4_0266	PF06551	YPD4_0266
YPD4_0267	PF00577	Outer membrane usher protein
YPD4_0267	PF13953	PapC C-terminal domain
YPD4_0267	PF13954	PapC N-terminal domain
YPD4_0268	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPD4_0270	PF01565	FAD binding domain
YPD4_0270	PF08031	Berberine and berberine like
YPD4_0271	PF03797	Autotransporter beta-domain
YPD4_0272	PF04345	Chorismate lyase
YPD4_0273	PF01040	UbiA prenyltransferase family
YPD4_0274	PF01553	Acyltransferase
YPD4_0275	PF01219	Prokaryotic diacylglycerol kinase
YPD4_0276	PF00717	Peptidase S24-like
YPD4_0276	PF01726	LexA DNA binding domain
YPD4_0277	PF01475	Ferric uptake regulator family
YPD4_0278	PF01207	Dihydrouridine synthase (Dus)
YPD4_0279	PF00107	Zinc-binding dehydrogenase
YPD4_0279	PF08240	Alcohol dehydrogenase GroES-like domain
YPD4_0280	PF00772	DnaB-like helicase N terminal domain
YPD4_0280	PF03796	DnaB-like helicase C terminal domain
YPD4_0281	PF00842	Alanine racemase, C-terminal domain
YPD4_0281	PF01168	Alanine racemase, N-terminal domain
YPD4_0282	PF00155	Aminotransferase class I and II
YPD4_0283	PF04237	YjbR
YPD4_0284	PF00005	ABC transporter
YPD4_0285	PF00436	Single-strand binding protein family
YPD4_0286	PF05336	Domain of unknown function (DUF718)
YPD4_0287	PF00465	Iron-containing alcohol dehydrogenase
YPD4_0288	PF00596	Class II Aldolase and Adducin N-terminal domain
YPD4_0289	PF06134	L-rhamnose isomerase (RhaA)
YPD4_0290	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPD4_0290	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPD4_0291	PF02311	AraC-like ligand binding domain
YPD4_0291	PF12833	Helix-turn-helix domain
YPD4_0292	PF02311	AraC-like ligand binding domain
YPD4_0292	PF12833	Helix-turn-helix domain
YPD4_0293	PF06379	YPD4_0293
YPD4_0295	PF03272	YPD4_0295
YPD4_0295	PF13402	Peptidase M60-like family
YPD4_0296	PF00440	Bacterial regulatory proteins, tetR family
YPD4_0297	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPD4_0297	PF13247	4Fe-4S dicluster domain
YPD4_0297	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
YPD4_0298	PF12800	4Fe-4S binding domain
YPD4_0298	PF13187	4Fe-4S dicluster domain
YPD4_0299	PF00384	Molybdopterin oxidoreductase
YPD4_0299	PF01568	Molydopterin dinucleotide binding domain
YPD4_0299	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YPD4_0300	PF02683	YPD4_0300
YPD4_0300	PF11412	Disulphide bond corrector protein DsbC
YPD4_0300	PF13899	Thioredoxin-like
YPD4_0301	PF03605	YPD4_0301
YPD4_0302	PF00206	Lyase
YPD4_0302	PF10415	Fumarase C C-terminus
YPD4_0303	PF04186	YPD4_0303
YPD4_0304	PF00118	TCP-1/cpn60 chaperonin family
YPD4_0305	PF13698	YPD4_0305
YPD4_0306	PF04055	Radical SAM superfamily
YPD4_0306	PF13353	4Fe-4S single cluster domain
YPD4_0307	PF01132	Elongation factor P (EF-P) OB domain
YPD4_0307	PF08207	Elongation factor P (EF-P) KOW-like domain
YPD4_0307	PF09285	Elongation factor P, C-terminal
YPD4_0308	PF00893	Small Multidrug Resistance protein
YPD4_0309	PF02313	Fumarate reductase subunit D
YPD4_0310	PF02300	Fumarate reductase subunit C
YPD4_0311	PF13085	2Fe-2S iron-sulfur cluster binding domain
YPD4_0311	PF13183	4Fe-4S dicluster domain
YPD4_0312	PF00890	FAD binding domain
YPD4_0312	PF02910	Fumarate reductase flavoprotein C-term
YPD4_0313	PF00152	tRNA synthetases class II (D, K and N)
YPD4_0314	PF00924	Mechanosensitive ion channel
YPD4_0314	PF12794	YPD4_0314
YPD4_0314	PF12795	YPD4_0314
YPD4_0315	PF02666	YPD4_0315
YPD4_0316	PF03193	Protein of unknown function, DUF258
YPD4_0317	PF00929	Exonuclease
YPD4_0318	PF08331	YPD4_0318
YPD4_0318	PF13484	YPD4_0318
YPD4_0319	PF01256	Carbohydrate kinase
YPD4_0319	PF03853	YjeF-related protein N-terminus
YPD4_0320	PF02367	Uncharacterised P-loop hydrolase UPF0079
YPD4_0321	PF01476	LysM domain
YPD4_0321	PF01520	N-acetylmuramoyl-L-alanine amidase
YPD4_0321	PF11741	AMIN domain
YPD4_0322	PF01119	DNA mismatch repair protein, C-terminal domain
YPD4_0322	PF08676	MutL C terminal dimerisation domain
YPD4_0322	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_0323	PF01715	IPP transferase
YPD4_0324	PF17209	YPD4_0324
YPD4_0325	PF01926	50S ribosome-binding GTPase
YPD4_0325	PF13167	YPD4_0325
YPD4_0325	PF16360	YPD4_0325
YPD4_0326	PF01145	SPFH domain / Band 7 family
YPD4_0326	PF12221	YPD4_0326
YPD4_0327	PF01145	SPFH domain / Band 7 family
YPD4_0328	PF00709	Adenylosuccinate synthetase
YPD4_0329	PF02082	Transcriptional regulator
YPD4_0330	PF00773	RNB domain
YPD4_0330	PF08206	Ribonuclease B OB domain
YPD4_0330	PF08461	Ribonuclease R winged-helix domain
YPD4_0331	PF00575	S1 RNA binding domain
YPD4_0332	PF00588	SpoU rRNA Methylase family
YPD4_0332	PF08032	RNA 2'-O ribose methyltransferase substrate binding
YPD4_0333	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
YPD4_0333	PF02770	Acyl-CoA dehydrogenase, middle domain
YPD4_0334	PF07338	Protein of unknown function (DUF1471)
YPD4_0335	PF01695	IstB-like ATP binding protein
YPD4_0336	PF00665	Integrase core domain
YPD4_0336	PF02796	Helix-turn-helix domain of resolvase
YPD4_0337	PF07728	AAA domain (dynein-related subfamily)
YPD4_0338	PF10117	YPD4_0338
YPD4_0339	PF01555	DNA methylase
YPD4_0340	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_0342	PF13558	Putative exonuclease SbcCD, C subunit
YPD4_0343	PF09983	YPD4_0343
YPD4_0343	PF11795	YPD4_0343
YPD4_0344	PF01435	Peptidase family M48
YPD4_0345	PF05987	YPD4_0345
YPD4_0347	PF12833	Helix-turn-helix domain
YPD4_0348	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
YPD4_0349	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
YPD4_0350	PF02378	Phosphotransferase system, EIIC
YPD4_0351	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YPD4_0351	PF00381	PTS HPr component phosphorylation site
YPD4_0351	PF00391	PEP-utilising enzyme, mobile domain
YPD4_0351	PF02896	PEP-utilising enzyme, TIM barrel domain
YPD4_0351	PF05524	PEP-utilising enzyme, N-terminal
YPD4_0352	PF10696	YPD4_0352
YPD4_0353	PF01791	DeoC/LacD family aldolase
YPD4_0354	PF13407	Periplasmic binding protein domain
YPD4_0355	PF02653	YPD4_0355
YPD4_0356	PF02653	YPD4_0356
YPD4_0357	PF00005	ABC transporter
YPD4_0358	PF04198	Putative sugar-binding domain
YPD4_0359	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPD4_0359	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPD4_0360	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
YPD4_0361	PF04932	YPD4_0361
YPD4_0362	PF16576	YPD4_0362
YPD4_0363	PF00873	AcrB/AcrD/AcrF family
YPD4_0364	PF01095	Pectinesterase
YPD4_0365	PF00990	GGDEF domain
YPD4_0366	PF07256	YPD4_0366
YPD4_0367	PF05175	Methyltransferase small domain
YPD4_0367	PF08468	Methyltransferase small domain N-terminal
YPD4_0368	PF03603	DNA polymerase III psi subunit
YPD4_0369	PF00583	Acetyltransferase (GNAT) family
YPD4_0370	PF00009	Elongation factor Tu GTP binding domain
YPD4_0370	PF03144	Elongation factor Tu domain 2
YPD4_0370	PF16658	YPD4_0370
YPD4_0371	PF04972	BON domain
YPD4_0372	PF01734	Patatin-like phospholipase
YPD4_0373	PF01026	TatD related DNase
YPD4_0374	PF01773	Na+ dependent nucleoside transporter N-terminus
YPD4_0374	PF07662	Na+ dependent nucleoside transporter C-terminus
YPD4_0374	PF07670	Nucleoside recognition
YPD4_0375	PF01791	DeoC/LacD family aldolase
YPD4_0376	PF00591	Glycosyl transferase family, a/b domain
YPD4_0376	PF02885	Glycosyl transferase family, helical bundle domain
YPD4_0377	PF00591	Glycosyl transferase family, a/b domain
YPD4_0377	PF07831	Pyrimidine nucleoside phosphorylase C-terminal domain
YPD4_0378	PF01676	Metalloenzyme superfamily
YPD4_0379	PF01048	Phosphorylase superfamily
YPD4_0380	PF10144	YPD4_0380
YPD4_0381	PF12710	haloacid dehalogenase-like hydrolase
YPD4_0382	PF13481	AAA domain
YPD4_0382	PF13541	Subunit ChlI of Mg-chelatase
YPD4_0383	PF01381	Helix-turn-helix
YPD4_0383	PF13521	AAA domain
YPD4_0384	PF02661	Fic/DOC family
YPD4_0384	PF13776	YPD4_0384
YPD4_0385	PF00005	ABC transporter
YPD4_0385	PF12848	ABC transporter
YPD4_0386	PF00005	ABC transporter
YPD4_0387	PF00691	OmpA family
YPD4_0388	PF00990	GGDEF domain
YPD4_0388	PF17152	YPD4_0388
YPD4_0389	PF13689	YPD4_0389
YPD4_0390	PF00122	E1-E2 ATPase
YPD4_0390	PF00689	Cation transporting ATPase, C-terminus
YPD4_0390	PF00690	Cation transporter/ATPase, N-terminus
YPD4_0390	PF00702	haloacid dehalogenase-like hydrolase
YPD4_0391	PF01464	Transglycosylase SLT domain
YPD4_0391	PF14718	Soluble lytic murein transglycosylase L domain
YPD4_0392	PF01371	Trp repressor protein
YPD4_0393	PF01931	Protein of unknown function DUF84
YPD4_0394	PF00300	Histidine phosphatase superfamily (branch 1)
YPD4_0395	PF06445	GyrI-like small molecule binding domain
YPD4_0395	PF12833	Helix-turn-helix domain
YPD4_0396	PF05981	YPD4_0396
YPD4_0397	PF00072	Response regulator receiver domain
YPD4_0397	PF00486	Transcriptional regulatory protein, C terminal
YPD4_0398	PF00696	Amino acid kinase family
YPD4_0398	PF01842	ACT domain
YPD4_0398	PF13840	ACT domain
YPD4_0399	PF00742	Homoserine dehydrogenase
YPD4_0399	PF03447	Homoserine dehydrogenase, NAD binding domain
YPD4_0400	PF00288	GHMP kinases N terminal domain
YPD4_0400	PF08544	GHMP kinases C terminal
YPD4_0401	PF00291	Pyridoxal-phosphate dependent enzyme
YPD4_0401	PF14821	Threonine synthase N terminus
YPD4_0402	PF03883	YPD4_0402
YPD4_0403	PF00923	Transaldolase
YPD4_0404	PF00994	Probable molybdopterin binding domain
YPD4_0405	PF07690	Major Facilitator Superfamily
YPD4_0407	PF01184	YPD4_0407
YPD4_0408	PF00012	Hsp70 protein
YPD4_0409	PF00226	DnaJ domain
YPD4_0409	PF00684	DnaJ central domain
YPD4_0409	PF01556	DnaJ C terminal domain
YPD4_0410	PF06965	Na+/H+ antiporter 1
YPD4_0411	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_0411	PF03466	LysR substrate binding domain
YPD4_0412	PF01687	Riboflavin kinase
YPD4_0412	PF06574	FAD synthetase
YPD4_0413	PF00133	tRNA synthetases class I (I, L, M and V)
YPD4_0413	PF06827	Zinc finger found in FPG and IleRS
YPD4_0413	PF08264	Anticodon-binding domain of tRNA
YPD4_0414	PF01252	YPD4_0414
YPD4_0415	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
YPD4_0416	PF02401	LytB protein
YPD4_0417	PF01797	Transposase IS200 like
YPD4_0418	PF01113	Dihydrodipicolinate reductase, N-terminus
YPD4_0418	PF05173	Dihydrodipicolinate reductase, C-terminus
YPD4_0419	PF00117	Glutamine amidotransferase class-I
YPD4_0419	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
YPD4_0420	PF02142	MGS-like domain
YPD4_0420	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
YPD4_0420	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
YPD4_0421	PF01810	YPD4_0421
YPD4_0422	PF06738	YPD4_0422
YPD4_0423	PF12821	YPD4_0423
YPD4_0424	PF00186	Dihydrofolate reductase
YPD4_0425	PF01797	Transposase IS200 like
YPD4_0426	PF12582	YPD4_0426
YPD4_0427	PF00149	Calcineurin-like phosphoesterase
YPD4_0428	PF04379	Protein of unknown function (DUF525)
YPD4_0429	PF00398	Ribosomal RNA adenine dimethylase
YPD4_0430	PF04166	Pyridoxal phosphate biosynthetic protein PdxA
YPD4_0431	PF00639	PPIC-type PPIASE domain
YPD4_0431	PF09312	SurA N-terminal domain
YPD4_0432	PF03968	OstA-like protein
YPD4_0432	PF04453	Organic solvent tolerance protein
YPD4_0433	PF00226	DnaJ domain
YPD4_0433	PF05099	Tellurite resistance protein TerB
YPD4_0434	PF00849	RNA pseudouridylate synthase
YPD4_0435	PF10074	YPD4_0435
YPD4_0436	PF06812	YPD4_0436
YPD4_0437	PF05591	YPD4_0437
YPD4_0438	PF05943	YPD4_0438
YPD4_0439	PF05638	Protein of unknown function (DUF796)
YPD4_0440	PF04965	Gene 25-like lysozyme
YPD4_0441	PF05947	YPD4_0441
YPD4_0442	PF06996	YPD4_0442
YPD4_0443	PF00004	ATPase family associated with various cellular activities (AAA)
YPD4_0443	PF02861	Clp amino terminal domain
YPD4_0443	PF07724	AAA domain (Cdc48 subfamily)
YPD4_0444	PF05954	Phage late control gene D protein (GPD)
YPD4_0445	PF09937	YPD4_0445
YPD4_0446	PF09937	YPD4_0446
YPD4_0446	PF13599	Pentapeptide repeats (9 copies)
YPD4_0447	PF00805	Pentapeptide repeats (8 copies)
YPD4_0447	PF13599	Pentapeptide repeats (9 copies)
YPD4_0448	PF12059	YPD4_0448
YPD4_0449	PF13665	YPD4_0449
YPD4_0450	PF12790	Type VI secretion lipoprotein
YPD4_0451	PF05936	YPD4_0451
YPD4_0452	PF00691	OmpA family
YPD4_0452	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
YPD4_0453	PF06744	YPD4_0453
YPD4_0453	PF06761	YPD4_0453
YPD4_0453	PF14331	YPD4_0453
YPD4_0455	PF00176	SNF2 family N-terminal domain
YPD4_0455	PF00271	Helicase conserved C-terminal domain
YPD4_0455	PF12137	RNA polymerase recycling family C-terminal
YPD4_0456	PF00136	DNA polymerase family B
YPD4_0456	PF03104	DNA polymerase family B, exonuclease domain
YPD4_0457	PF09335	YPD4_0457
YPD4_0458	PF00005	ABC transporter
YPD4_0459	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_0460	PF13343	Bacterial extracellular solute-binding protein
YPD4_0461	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPD4_0461	PF12793	YPD4_0461
YPD4_0462	PF07690	Major Facilitator Superfamily
YPD4_0463	PF01695	IstB-like ATP binding protein
YPD4_0464	PF00665	Integrase core domain
YPD4_0464	PF02796	Helix-turn-helix domain of resolvase
YPD4_0465	PF00694	Aconitase C-terminal domain
YPD4_0466	PF00330	Aconitase family (aconitate hydratase)
YPD4_0467	PF00180	Isocitrate/isopropylmalate dehydrogenase
YPD4_0468	PF00682	HMGL-like
YPD4_0468	PF08502	LeuA allosteric (dimerisation) domain
YPD4_0469	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_0469	PF03466	LysR substrate binding domain
YPD4_0470	PF00501	AMP-binding enzyme
YPD4_0471	PF00205	Thiamine pyrophosphate enzyme, central domain
YPD4_0471	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPD4_0471	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YPD4_0472	PF01842	ACT domain
YPD4_0472	PF10369	Small subunit of acetolactate synthase
YPD4_0473	PF01797	Transposase IS200 like
YPD4_0474	PF00356	Bacterial regulatory proteins, lacI family
YPD4_0474	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YPD4_0475	PF06610	YPD4_0475
YPD4_0476	PF02381	MraZ protein
YPD4_0477	PF01795	MraW methylase family
YPD4_0478	PF04999	YPD4_0478
YPD4_0479	PF00905	Penicillin binding protein transpeptidase domain
YPD4_0479	PF03717	Penicillin-binding Protein dimerisation domain
YPD4_0480	PF01225	Mur ligase family, catalytic domain
YPD4_0480	PF02875	Mur ligase family, glutamate ligase domain
YPD4_0480	PF08245	Mur ligase middle domain
YPD4_0481	PF01225	Mur ligase family, catalytic domain
YPD4_0481	PF02875	Mur ligase family, glutamate ligase domain
YPD4_0481	PF08245	Mur ligase middle domain
YPD4_0482	PF00953	Glycosyl transferase family 4
YPD4_0482	PF10555	Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
YPD4_0483	PF02875	Mur ligase family, glutamate ligase domain
YPD4_0483	PF08245	Mur ligase middle domain
YPD4_0484	PF01098	YPD4_0484
YPD4_0485	PF03033	Glycosyltransferase family 28 N-terminal domain
YPD4_0485	PF04101	Glycosyltransferase family 28 C-terminal domain
YPD4_0486	PF01225	Mur ligase family, catalytic domain
YPD4_0486	PF02875	Mur ligase family, glutamate ligase domain
YPD4_0486	PF08245	Mur ligase middle domain
YPD4_0487	PF01820	D-ala D-ala ligase N-terminus
YPD4_0487	PF07478	D-ala D-ala ligase C-terminus
YPD4_0488	PF03799	Cell division protein FtsQ
YPD4_0488	PF08478	POTRA domain, FtsQ-type
YPD4_0489	PF02491	SHS2 domain inserted in FTSA
YPD4_0489	PF14450	Cell division protein FtsA
YPD4_0490	PF00091	Tubulin/FtsZ family, GTPase domain
YPD4_0490	PF12327	FtsZ family, C-terminal domain
YPD4_0491	PF03331	UDP-3-O-acyl N-acetylglycosamine deacetylase
YPD4_0492	PF05258	YPD4_0492
YPD4_0493	PF06558	YPD4_0493
YPD4_0494	PF01043	SecA preprotein cross-linking domain
YPD4_0494	PF02810	SEC-C motif
YPD4_0494	PF07516	SecA Wing and Scaffold domain
YPD4_0494	PF07517	SecA DEAD-like domain
YPD4_0495	PF00293	NUDIX domain
YPD4_0496	PF01695	IstB-like ATP binding protein
YPD4_0497	PF00665	Integrase core domain
YPD4_0497	PF02796	Helix-turn-helix domain of resolvase
YPD4_0498	PF07681	YPD4_0498
YPD4_0499	PF07332	YPD4_0499
YPD4_0500	PF05957	YPD4_0500
YPD4_0501	PF06476	YPD4_0501
YPD4_0502	PF13721	SecD export protein N-terminal TM region
YPD4_0503	PF09335	YPD4_0503
YPD4_0505	PF00392	Bacterial regulatory proteins, gntR family
YPD4_0505	PF07729	FCD domain
YPD4_0506	PF07690	Major Facilitator Superfamily
YPD4_0507	PF02614	Glucuronate isomerase
YPD4_0508	PF01232	Mannitol dehydrogenase Rossmann domain
YPD4_0508	PF08125	Mannitol dehydrogenase C-terminal domain
YPD4_0509	PF04295	YPD4_0509
YPD4_0509	PF08666	SAF domain
YPD4_0510	PF10688	YPD4_0510
YPD4_0511	PF01797	Transposase IS200 like
YPD4_0512	PF00375	Sodium:dicarboxylate symporter family
YPD4_0513	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPD4_0514	PF01863	Protein of unknown function DUF45
YPD4_0515	PF03212	Pertactin
YPD4_0515	PF03797	Autotransporter beta-domain
YPD4_0516	PF05175	Methyltransferase small domain
YPD4_0517	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
YPD4_0517	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPD4_0518	PF03729	YPD4_0518
YPD4_0519	PF00069	Protein kinase domain
YPD4_0520	PF13672	Protein phosphatase 2C
YPD4_0521	PF00092	von Willebrand factor type A domain
YPD4_0521	PF15616	YPD4_0521
YPD4_0522	PF00092	von Willebrand factor type A domain
YPD4_0523	PF02342	TerD domain
YPD4_0524	PF00092	von Willebrand factor type A domain
YPD4_0525	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YPD4_0525	PF08479	POTRA domain, ShlB-type
YPD4_0525	PF17287	YPD4_0525
YPD4_0526	PF04829	YPD4_0526
YPD4_0526	PF05860	haemagglutination activity domain
YPD4_0526	PF13018	YPD4_0526
YPD4_0526	PF13332	YPD4_0526
YPD4_0528	PF03797	Autotransporter beta-domain
YPD4_0529	PF13557	YPD4_0529
YPD4_0530	PF10091	Putative glucoamylase
YPD4_0531	PF00005	ABC transporter
YPD4_0531	PF08402	TOBE domain
YPD4_0533	PF00356	Bacterial regulatory proteins, lacI family
YPD4_0533	PF13377	Periplasmic binding protein-like domain
YPD4_0534	PF01547	Bacterial extracellular solute-binding protein
YPD4_0535	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_0536	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_0538	PF00933	Glycosyl hydrolase family 3 N terminal domain
YPD4_0538	PF01915	Glycosyl hydrolase family 3 C-terminal domain
YPD4_0538	PF14310	Fibronectin type III-like domain
YPD4_0539	PF02321	Outer membrane efflux protein
YPD4_0540	PF04632	YPD4_0540
YPD4_0541	PF13437	HlyD family secretion protein
YPD4_0541	PF13533	Biotin-lipoyl like
YPD4_0542	PF00155	Aminotransferase class I and II
YPD4_0543	PF03553	YPD4_0543
YPD4_0544	PF10604	Polyketide cyclase / dehydrase and lipid transport
YPD4_0545	PF08348	YPD4_0545
YPD4_0546	PF01042	Endoribonuclease L-PSP
YPD4_0547	PF01042	Endoribonuclease L-PSP
YPD4_0548	PF08803	Putative mono-oxygenase ydhR
YPD4_0550	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_0550	PF03466	LysR substrate binding domain
YPD4_0555	PF00140	Sigma-70 factor, region 1
YPD4_0555	PF03979	Sigma-70 factor, region 1
YPD4_0555	PF04539	Sigma-70 region 3
YPD4_0555	PF04542	Sigma-70 region 2
YPD4_0555	PF04545	Sigma-70, region 4
YPD4_0555	PF04546	Sigma-70, non-essential region
YPD4_0556	PF08275	DNA primase catalytic core, N-terminal domain
YPD4_0556	PF08278	DNA primase DnaG DnaB-binding
YPD4_0556	PF10410	DnaB-helicase binding domain of primase
YPD4_0556	PF13155	Toprim-like
YPD4_0558	PF00814	Glycoprotease family
YPD4_0559	PF02660	YPD4_0559
YPD4_0560	PF02152	Dihydroneopterin aldolase
YPD4_0561	PF02673	YPD4_0561
YPD4_0563	PF01743	Poly A polymerase head domain
YPD4_0563	PF01966	HD domain
YPD4_0563	PF12627	Probable RNA and SrmB- binding site of polymerase A
YPD4_0564	PF08239	Bacterial SH3 domain
YPD4_0565	PF01928	CYTH domain
YPD4_0566	PF03710	Glutamate-ammonia ligase adenylyltransferase
YPD4_0566	PF08335	GlnD PII-uridylyltransferase
YPD4_0567	PF00294	pfkB family carbohydrate kinase
YPD4_0567	PF01467	Cytidylyltransferase
YPD4_0568	PF13520	Amino acid permease
YPD4_0569	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
YPD4_0570	PF02900	Catalytic LigB subunit of aromatic ring-opening dioxygenase
YPD4_0571	PF03738	Glutathionylspermidine synthase preATP-grasp
YPD4_0572	PF03738	Glutathionylspermidine synthase preATP-grasp
YPD4_0573	PF06693	YPD4_0573
YPD4_0574	PF02321	Outer membrane efflux protein
YPD4_0575	PF00293	NUDIX domain
YPD4_0576	PF06853	YPD4_0576
YPD4_0577	PF00149	Calcineurin-like phosphoesterase
YPD4_0578	PF05728	Uncharacterised protein family (UPF0227)
YPD4_0579	PF00204	DNA gyrase B
YPD4_0579	PF00986	DNA gyrase B subunit, carboxyl terminus
YPD4_0579	PF01751	Toprim domain
YPD4_0579	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_0580	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_0580	PF03466	LysR substrate binding domain
YPD4_0581	PF02525	Flavodoxin-like fold
YPD4_0582	PF00521	DNA gyrase/topoisomerase IV, subunit A
YPD4_0582	PF03989	DNA gyrase C-terminal domain, beta-propeller
YPD4_0583	PF01553	Acyltransferase
YPD4_0584	PF07731	Multicopper oxidase
YPD4_0584	PF07732	Multicopper oxidase
YPD4_0585	PF04055	Radical SAM superfamily
YPD4_0585	PF08497	YPD4_0585
YPD4_0586	PF11842	YPD4_0586
YPD4_0587	PF00248	Aldo/keto reductase family
YPD4_0588	PF00465	Iron-containing alcohol dehydrogenase
YPD4_0589	PF06719	YPD4_0589
YPD4_0589	PF12833	Helix-turn-helix domain
YPD4_0590	PF09335	YPD4_0590
YPD4_0591	PF01053	Cys/Met metabolism PLP-dependent enzyme
YPD4_0592	PF01618	YPD4_0592
YPD4_0593	PF02472	Biopolymer transport protein ExbD/TolR
YPD4_0595	PF16964	YPD4_0595
YPD4_0596	PF07811	YPD4_0596
YPD4_0598	PF00482	Type II secretion system (T2SS), protein F
YPD4_0599	PF00482	Type II secretion system (T2SS), protein F
YPD4_0600	PF00437	Type II/IV secretion system protein
YPD4_0602	PF00263	YPD4_0602
YPD4_0603	PF13629	YPD4_0603
YPD4_0605	PF01478	Type IV leader peptidase family
YPD4_0606	PF01797	Transposase IS200 like
YPD4_0607	PF01797	Transposase IS200 like
YPD4_0608	PF00577	Outer membrane usher protein
YPD4_0608	PF13953	PapC C-terminal domain
YPD4_0608	PF13954	PapC N-terminal domain
YPD4_0609	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPD4_0609	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPD4_0610	PF00419	Fimbrial protein
YPD4_0611	PF01497	Periplasmic binding protein
YPD4_0613	PF00771	FHIPEP family
YPD4_0614	PF00771	FHIPEP family
YPD4_0615	PF01312	FlhB HrpN YscU SpaS Family
YPD4_0616	PF01311	YPD4_0616
YPD4_0617	PF00813	YPD4_0617
YPD4_0618	PF01052	Surface presentation of antigens (SPOA)
YPD4_0619	PF01052	Surface presentation of antigens (SPOA)
YPD4_0620	PF00158	Sigma-54 interaction domain
YPD4_0620	PF02954	Bacterial regulatory protein, Fis family
YPD4_0621	PF02049	YPD4_0621
YPD4_0622	PF01514	Secretory protein of YscJ/FliF family
YPD4_0622	PF08345	YPD4_0622
YPD4_0623	PF01706	FliG C-terminal domain
YPD4_0623	PF14841	FliG middle domain
YPD4_0623	PF14842	FliG N-terminal domain
YPD4_0624	PF02108	YPD4_0624
YPD4_0624	PF09811	YPD4_0624
YPD4_0625	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPD4_0626	PF02050	Flagellar FliJ protein
YPD4_0627	PF05130	FlgN protein
YPD4_0628	PF13144	SAF-like
YPD4_0629	PF00460	Flagella basal body rod protein
YPD4_0630	PF00460	Flagella basal body rod protein
YPD4_0630	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPD4_0631	PF03963	YPD4_0631
YPD4_0631	PF13860	FlgD Ig-like domain
YPD4_0631	PF13861	FlgD Tudor-like domain
YPD4_0632	PF00460	Flagella basal body rod protein
YPD4_0632	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPD4_0632	PF07559	Flagellar basal body protein FlaE
YPD4_0633	PF01797	Transposase IS200 like
YPD4_0634	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPD4_0635	PF00460	Flagella basal body rod protein
YPD4_0635	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPD4_0636	PF02107	YPD4_0636
YPD4_0637	PF02119	YPD4_0637
YPD4_0638	PF00460	Flagella basal body rod protein
YPD4_0638	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPD4_0639	PF00669	Bacterial flagellin N-terminal helical region
YPD4_0642	PF00486	Transcriptional regulatory protein, C terminal
YPD4_0643	PF00669	Bacterial flagellin N-terminal helical region
YPD4_0643	PF00700	Bacterial flagellin C-terminal helical region
YPD4_0644	PF00669	Bacterial flagellin N-terminal helical region
YPD4_0644	PF00700	Bacterial flagellin C-terminal helical region
YPD4_0645	PF00669	Bacterial flagellin N-terminal helical region
YPD4_0645	PF00700	Bacterial flagellin C-terminal helical region
YPD4_0646	PF02465	YPD4_0646
YPD4_0646	PF07195	YPD4_0646
YPD4_0646	PF07196	Flagellin hook IN motif
YPD4_0647	PF02561	Flagellar protein FliS
YPD4_0649	PF02120	Flagellar hook-length control protein FliK
YPD4_0650	PF03748	YPD4_0650
YPD4_0651	PF04539	Sigma-70 region 3
YPD4_0651	PF04542	Sigma-70 region 2
YPD4_0651	PF04545	Sigma-70, region 4
YPD4_0652	PF01618	YPD4_0652
YPD4_0653	PF00691	OmpA family
YPD4_0653	PF13677	YPD4_0653
YPD4_0656	PF13518	Helix-turn-helix domain
YPD4_0657	PF00665	Integrase core domain
YPD4_0657	PF13276	YPD4_0657
YPD4_0658	PF00150	Cellulase (glycosyl hydrolase family 5)
YPD4_0659	PF00356	Bacterial regulatory proteins, lacI family
YPD4_0659	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YPD4_0660	PF00939	Sodium:sulfate symporter transmembrane region
YPD4_0662	PF03527	YPD4_0662
YPD4_0662	PF05593	YPD4_0662
YPD4_0664	PF05954	Phage late control gene D protein (GPD)
YPD4_0664	PF06715	Gp5 C-terminal repeat (3 copies)
YPD4_0665	PF03797	Autotransporter beta-domain
YPD4_0667	PF03797	Autotransporter beta-domain
YPD4_0669	PF02447	YPD4_0669
YPD4_0672	PF00005	ABC transporter
YPD4_0672	PF00664	ABC transporter transmembrane region
YPD4_0673	PF00005	ABC transporter
YPD4_0673	PF00664	ABC transporter transmembrane region
YPD4_0674	PF07690	Major Facilitator Superfamily
YPD4_0675	PF00975	Thioesterase domain
YPD4_0676	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPD4_0677	PF01370	NAD dependent epimerase/dehydratase family
YPD4_0678	PF00501	AMP-binding enzyme
YPD4_0678	PF00550	Phosphopantetheine attachment site
YPD4_0678	PF00668	Condensation domain
YPD4_0678	PF00975	Thioesterase domain
YPD4_0678	PF08242	Methyltransferase domain
YPD4_0679	PF00501	AMP-binding enzyme
YPD4_0679	PF00550	Phosphopantetheine attachment site
YPD4_0680	PF00501	AMP-binding enzyme
YPD4_0680	PF00550	Phosphopantetheine attachment site
YPD4_0680	PF00668	Condensation domain
YPD4_0681	PF01695	IstB-like ATP binding protein
YPD4_0682	PF00665	Integrase core domain
YPD4_0682	PF02796	Helix-turn-helix domain of resolvase
YPD4_0683	PF00109	Beta-ketoacyl synthase, N-terminal domain
YPD4_0683	PF00501	AMP-binding enzyme
YPD4_0683	PF00550	Phosphopantetheine attachment site
YPD4_0683	PF02801	Beta-ketoacyl synthase, C-terminal domain
YPD4_0684	PF00593	TonB dependent receptor
YPD4_0684	PF07715	TonB-dependent Receptor Plug Domain
YPD4_0685	PF01546	Peptidase family M20/M25/M40
YPD4_0685	PF07687	Peptidase dimerisation domain
YPD4_0686	PF03806	YPD4_0686
YPD4_0687	PF12468	Type III secretion system leucine rich repeat protein
YPD4_0687	PF14496	C-terminal novel E3 ligase, LRR-interacting
YPD4_0688	PF12468	Type III secretion system leucine rich repeat protein
YPD4_0689	PF12468	Type III secretion system leucine rich repeat protein
YPD4_0689	PF14496	C-terminal novel E3 ligase, LRR-interacting
YPD4_0690	PF13018	YPD4_0690
YPD4_0692	PF07906	YPD4_0692
YPD4_0693	PF00873	AcrB/AcrD/AcrF family
YPD4_0694	PF16576	YPD4_0694
YPD4_0695	PF00563	EAL domain
YPD4_0695	PF00989	PAS fold
YPD4_0695	PF00990	GGDEF domain
YPD4_0695	PF05228	YPD4_0695
YPD4_0696	PF00665	Integrase core domain
YPD4_0696	PF13276	YPD4_0696
YPD4_0697	PF13518	Helix-turn-helix domain
YPD4_0698	PF13347	MFS/sugar transport protein
YPD4_0699	PF00593	TonB dependent receptor
YPD4_0699	PF07715	TonB-dependent Receptor Plug Domain
YPD4_0700	PF13434	L-lysine 6-monooxygenase (NADPH-requiring)
YPD4_0701	PF04183	IucA / IucC family
YPD4_0701	PF06276	Ferric iron reductase FhuF-like transporter
YPD4_0702	PF13523	Acetyltransferase (GNAT) domain
YPD4_0703	PF04183	IucA / IucC family
YPD4_0703	PF06276	Ferric iron reductase FhuF-like transporter
YPD4_0704	PF04183	IucA / IucC family
YPD4_0705	PF07690	Major Facilitator Superfamily
YPD4_0706	PF00775	Dioxygenase
YPD4_0707	PF10503	Esterase PHB depolymerase
YPD4_0708	PF00196	Bacterial regulatory proteins, luxR family
YPD4_0708	PF03472	Autoinducer binding domain
YPD4_0709	PF00765	Autoinducer synthetase
YPD4_0710	PF02517	CAAX protease self-immunity
YPD4_0712	PF05591	YPD4_0712
YPD4_0713	PF05943	YPD4_0713
YPD4_0714	PF05936	YPD4_0714
YPD4_0715	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
YPD4_0717	PF00691	OmpA family
YPD4_0718	PF05638	Protein of unknown function (DUF796)
YPD4_0719	PF00004	ATPase family associated with various cellular activities (AAA)
YPD4_0719	PF07724	AAA domain (Cdc48 subfamily)
YPD4_0719	PF10431	C-terminal, D2-small domain, of ClpB protein
YPD4_0720	PF05954	Phage late control gene D protein (GPD)
YPD4_0720	PF10106	YPD4_0720
YPD4_0720	PF13296	YPD4_0720
YPD4_0721	PF01551	Peptidase family M23
YPD4_0723	PF03400	YPD4_0723
YPD4_0724	PF10106	YPD4_0724
YPD4_0725	PF01276	Orn/Lys/Arg decarboxylase, major domain
YPD4_0725	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
YPD4_0725	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
YPD4_0726	PF13407	Periplasmic binding protein domain
YPD4_0727	PF00005	ABC transporter
YPD4_0728	PF02653	YPD4_0728
YPD4_0729	PF00593	TonB dependent receptor
YPD4_0729	PF07715	TonB-dependent Receptor Plug Domain
YPD4_0730	PF01497	Periplasmic binding protein
YPD4_0731	PF01464	Transglycosylase SLT domain
YPD4_0731	PF11873	Domain of unknown function (DUF3393)
YPD4_0732	PF00633	Helix-hairpin-helix motif
YPD4_0732	PF00730	HhH-GPD superfamily base excision DNA repair protein
YPD4_0732	PF10576	Iron-sulfur binding domain of endonuclease III
YPD4_0732	PF14815	NUDIX domain
YPD4_0733	PF02390	Putative methyltransferase
YPD4_0734	PF04320	YPD4_0734
YPD4_0735	PF04960	Glutaminase
YPD4_0736	PF11101	YPD4_0736
YPD4_0737	PF11713	Peptidase C80 family
YPD4_0738	PF04055	Radical SAM superfamily
YPD4_0738	PF06969	HemN C-terminal domain
YPD4_0739	PF01725	Ham1 family
YPD4_0740	PF02594	Uncharacterised ACR, YggU family COG1872
YPD4_0741	PF02325	YPD4_0741
YPD4_0742	PF03807	NADP oxidoreductase coenzyme F420-dependent
YPD4_0742	PF14748	Pyrroline-5-carboxylate reductase dimerisation
YPD4_0743	PF01168	Alanine racemase, N-terminal domain
YPD4_0744	PF00437	Type II/IV secretion system protein
YPD4_0745	PF04371	Porphyromonas-type peptidyl-arginine deiminase
YPD4_0746	PF00795	Carbon-nitrogen hydrolase
YPD4_0747	PF03652	Uncharacterised protein family (UPF0081)
YPD4_0748	PF02622	Uncharacterized ACR, COG1678
YPD4_0749	PF02951	Prokaryotic glutathione synthetase, N-terminal domain
YPD4_0749	PF02955	Prokaryotic glutathione synthetase, ATP-grasp domain
YPD4_0750	PF04452	RNA methyltransferase
YPD4_0751	PF04231	Endonuclease I
YPD4_0752	PF10263	YPD4_0752
YPD4_0752	PF17283	YPD4_0752
YPD4_0753	PF00438	S-adenosylmethionine synthetase, N-terminal domain
YPD4_0753	PF02772	S-adenosylmethionine synthetase, central domain
YPD4_0753	PF02773	S-adenosylmethionine synthetase, C-terminal domain
YPD4_0754	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
YPD4_0755	PF00355	Rieske [2Fe-2S] domain
YPD4_0756	PF01435	Peptidase family M48
YPD4_0757	PF00456	Transketolase, thiamine diphosphate binding domain
YPD4_0757	PF02779	Transketolase, pyrimidine binding domain
YPD4_0757	PF02780	Transketolase, C-terminal domain
YPD4_0758	PF01797	Transposase IS200 like
YPD4_0759	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
YPD4_0760	PF00162	Phosphoglycerate kinase
YPD4_0761	PF01116	Fructose-bisphosphate aldolase class-II
YPD4_0762	PF00924	Mechanosensitive ion channel
YPD4_0762	PF05552	Conserved TM helix
YPD4_0763	PF01810	YPD4_0763
YPD4_0764	PF04402	Protein of unknown function (DUF541)
YPD4_0765	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_0765	PF03466	LysR substrate binding domain
YPD4_0766	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
YPD4_0767	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YPD4_0767	PF01842	ACT domain
YPD4_0767	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YPD4_0768	PF01812	5-formyltetrahydrofolate cyclo-ligase family
YPD4_0769	PF05164	Cell division protein ZapA
YPD4_0770	PF03695	Uncharacterised protein family (UPF0149)
YPD4_0771	PF00557	Metallopeptidase family M24
YPD4_0771	PF05195	Aminopeptidase P, N-terminal domain
YPD4_0772	PF01494	FAD binding domain
YPD4_0773	PF01494	FAD binding domain
YPD4_0774	PF01571	Aminomethyltransferase folate-binding domain
YPD4_0774	PF08669	Glycine cleavage T-protein C-terminal barrel domain
YPD4_0775	PF01597	Glycine cleavage H-protein
YPD4_0776	PF02347	Glycine cleavage system P-protein
YPD4_0777	PF13924	YPD4_0777
YPD4_0778	PF03895	YadA-like C-terminal region
YPD4_0778	PF05658	Head domain of trimeric autotransporter adhesin
YPD4_0778	PF05662	Coiled stalk of trimeric autotransporter adhesin
YPD4_0780	PF03006	YPD4_0780
YPD4_0781	PF09933	YPD4_0781
YPD4_0782	PF01571	Aminomethyltransferase folate-binding domain
YPD4_0783	PF07254	YPD4_0783
YPD4_0784	PF00072	Response regulator receiver domain
YPD4_0784	PF00486	Transcriptional regulatory protein, C terminal
YPD4_0785	PF00512	His Kinase A (phospho-acceptor) domain
YPD4_0785	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_0785	PF14827	Sensory domain of two-component sensor kinase
YPD4_0786	PF06123	YPD4_0786
YPD4_0787	PF00258	Flavodoxin
YPD4_0788	PF00589	Phage integrase family
YPD4_0788	PF02899	Phage integrase, N-terminal SAM-like domain
YPD4_0789	PF10411	Disulfide bond isomerase protein N-terminus
YPD4_0789	PF13098	Thioredoxin-like domain
YPD4_0790	PF01368	DHH family
YPD4_0790	PF02272	DHHA1 domain
YPD4_0791	PF00472	RF-1 domain
YPD4_0791	PF03462	PCRF domain
YPD4_0792	PF00152	tRNA synthetases class II (D, K and N)
YPD4_0792	PF01336	OB-fold nucleic acid binding domain
YPD4_0793	PF00589	Phage integrase family
YPD4_0793	PF13356	Domain of unknown function (DUF4102)
YPD4_0794	PF01381	Helix-turn-helix
YPD4_0795	PF15731	YPD4_0795
YPD4_0796	PF03288	Poxvirus D5 protein-like
YPD4_0796	PF08273	Zinc-binding domain of primase-helicase
YPD4_0796	PF08706	YPD4_0796
YPD4_0796	PF13362	Toprim domain
YPD4_0797	PF05973	YPD4_0797
YPD4_0800	PF02661	Fic/DOC family
YPD4_0801	PF06958	S-type Pyocin
YPD4_0803	PF11340	YPD4_0803
YPD4_0805	PF05488	PAAR motif
YPD4_0806	PF12977	Domain of Unknown Function with PDB structure (DUF3861)
YPD4_0807	PF03551	Transcriptional regulator PadR-like family
YPD4_0808	PF05708	Orthopoxvirus protein of unknown function (DUF830)
YPD4_0810	PF13407	Periplasmic binding protein domain
YPD4_0811	PF02653	YPD4_0811
YPD4_0812	PF00005	ABC transporter
YPD4_0813	PF00005	ABC transporter
YPD4_0813	PF08402	TOBE domain
YPD4_0814	PF13416	Bacterial extracellular solute-binding protein
YPD4_0815	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_0816	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_0817	PF07745	Glycosyl hydrolase family 53
YPD4_0818	PF02449	Beta-galactosidase
YPD4_0818	PF08532	Beta-galactosidase trimerisation domain
YPD4_0818	PF08533	Beta-galactosidase C-terminal domain
YPD4_0819	PF00367	phosphotransferase system, EIIB
YPD4_0820	PF02264	LamB porin
YPD4_0821	PF00356	Bacterial regulatory proteins, lacI family
YPD4_0821	PF13377	Periplasmic binding protein-like domain
YPD4_0822	PF01055	Glycosyl hydrolases family 31
YPD4_0822	PF13802	Galactose mutarotase-like
YPD4_0822	PF17137	YPD4_0822
YPD4_0823	PF07690	Major Facilitator Superfamily
YPD4_0824	PF00356	Bacterial regulatory proteins, lacI family
YPD4_0824	PF13377	Periplasmic binding protein-like domain
YPD4_0825	PF01965	DJ-1/PfpI family
YPD4_0826	PF01116	Fructose-bisphosphate aldolase class-II
YPD4_0827	PF10022	YPD4_0827
YPD4_0828	PF00884	Sulfatase
YPD4_0829	PF04055	Radical SAM superfamily
YPD4_0829	PF13186	Iron-sulfur cluster-binding domain
YPD4_0830	PF07470	Glycosyl Hydrolase Family 88
YPD4_0831	PF13561	Enoyl-(Acyl carrier protein) reductase
YPD4_0832	PF01979	Amidohydrolase family
YPD4_0833	PF03610	PTS system fructose IIA component
YPD4_0834	PF03613	YPD4_0834
YPD4_0835	PF03609	YPD4_0835
YPD4_0836	PF03830	PTS system sorbose subfamily IIB component
YPD4_0837	PF01380	SIS domain
YPD4_0838	PF08013	Tagatose 6 phosphate kinase
YPD4_0839	PF00455	YPD4_0839
YPD4_0839	PF08220	DeoR-like helix-turn-helix domain
YPD4_0840	PF00884	Sulfatase
YPD4_0841	PF01797	Transposase IS200 like
YPD4_0842	PF00665	Integrase core domain
YPD4_0842	PF02796	Helix-turn-helix domain of resolvase
YPD4_0843	PF01695	IstB-like ATP binding protein
YPD4_0844	PF02278	Polysaccharide lyase family 8, super-sandwich domain
YPD4_0844	PF02884	Polysaccharide lyase family 8, C-terminal beta-sandwich domain
YPD4_0844	PF09092	Lyase, N terminal
YPD4_0844	PF09093	Lyase, catalytic
YPD4_0845	PF03797	Autotransporter beta-domain
YPD4_0846	PF16946	YPD4_0846
YPD4_0847	PF00484	Carbonic anhydrase
YPD4_0849	PF11356	Type IV pilus biogenesis
YPD4_0850	PF00263	YPD4_0850
YPD4_0850	PF03958	Bacterial type II/III secretion system short domain
YPD4_0851	PF00437	Type II/IV secretion system protein
YPD4_0852	PF00482	Type II secretion system (T2SS), protein F
YPD4_0853	PF07963	Prokaryotic N-terminal methylation motif
YPD4_0853	PF08334	Type II secretion system (T2SS), protein G
YPD4_0854	PF11612	Type II secretion system (T2SS), protein J
YPD4_0855	PF03934	Type II secretion system (T2SS), protein K
YPD4_0856	PF05134	Type II secretion system (T2SS), protein L
YPD4_0856	PF12693	GspL periplasmic domain
YPD4_0858	PF01478	Type IV leader peptidase family
YPD4_0858	PF06750	YPD4_0858
YPD4_0859	PF09691	Bacterial chaperone lipoprotein (PulS_OutS)
YPD4_0860	PF00486	Transcriptional regulatory protein, C terminal
YPD4_0861	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPD4_0861	PF02203	Tar ligand binding domain homologue
YPD4_0862	PF01323	DSBA-like thioredoxin domain
YPD4_0863	PF00753	Metallo-beta-lactamase superfamily
YPD4_0864	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_0864	PF03466	LysR substrate binding domain
YPD4_0865	PF07690	Major Facilitator Superfamily
YPD4_0866	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_0866	PF03466	LysR substrate binding domain
YPD4_0867	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
YPD4_0867	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
YPD4_0868	PF00356	Bacterial regulatory proteins, lacI family
YPD4_0868	PF13377	Periplasmic binding protein-like domain
YPD4_0869	PF00384	Molybdopterin oxidoreductase
YPD4_0869	PF01568	Molydopterin dinucleotide binding domain
YPD4_0870	PF00501	AMP-binding enzyme
YPD4_0870	PF01553	Acyltransferase
YPD4_0870	PF13193	AMP-binding enzyme C-terminal domain
YPD4_0871	PF07690	Major Facilitator Superfamily
YPD4_0872	PF00248	Aldo/keto reductase family
YPD4_0873	PF02976	DNA mismatch repair enzyme MutH
YPD4_0874	PF00293	NUDIX domain
YPD4_0875	PF00391	PEP-utilising enzyme, mobile domain
YPD4_0875	PF01590	GAF domain
YPD4_0875	PF02896	PEP-utilising enzyme, TIM barrel domain
YPD4_0875	PF05524	PEP-utilising enzyme, N-terminal
YPD4_0876	PF01790	YPD4_0876
YPD4_0877	PF00303	Thymidylate synthase
YPD4_0878	PF00665	Integrase core domain
YPD4_0878	PF02796	Helix-turn-helix domain of resolvase
YPD4_0879	PF01695	IstB-like ATP binding protein
YPD4_0881	PF10713	YPD4_0881
YPD4_0882	PF07963	Prokaryotic N-terminal methylation motif
YPD4_0882	PF12528	YPD4_0882
YPD4_0883	PF04257	Exodeoxyribonuclease V, gamma subunit
YPD4_0884	PF00675	Insulinase (Peptidase family M16)
YPD4_0884	PF05193	Peptidase M16 inactive domain
YPD4_0884	PF16187	YPD4_0884
YPD4_0885	PF00580	UvrD/REP helicase N-terminal domain
YPD4_0886	PF12705	PD-(D/E)XK nuclease superfamily
YPD4_0886	PF13361	UvrD-like helicase C-terminal domain
YPD4_0887	PF13538	UvrD-like helicase C-terminal domain
YPD4_0887	PF13604	AAA domain
YPD4_0888	PF00583	Acetyltransferase (GNAT) family
YPD4_0888	PF00696	Amino acid kinase family
YPD4_0889	PF01520	N-acetylmuramoyl-L-alanine amidase
YPD4_0889	PF11741	AMIN domain
YPD4_0890	PF03562	MltA specific insert domain
YPD4_0890	PF06725	3D domain
YPD4_0891	PF00899	ThiF family
YPD4_0892	PF02657	Fe-S metabolism associated domain
YPD4_0893	PF00266	Aminotransferase class-V
YPD4_0894	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_0894	PF03466	LysR substrate binding domain
YPD4_0895	PF04241	YPD4_0895
YPD4_0896	PF01728	FtsJ-like methyltransferase
YPD4_0897	PF01367	5'-3' exonuclease, C-terminal SAM fold
YPD4_0897	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
YPD4_0898	PF03641	Possible lysine decarboxylase
YPD4_0898	PF11892	Domain of unknown function (DUF3412)
YPD4_0898	PF14793	Domain of unknown function (DUF4478)
YPD4_0899	PF14489	QueF-like protein
YPD4_0899	PF14819	Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term
YPD4_0900	PF07348	Syd protein (SUKH-2)
YPD4_0901	PF01797	Transposase IS200 like
YPD4_0902	PF04287	tRNA pseudouridine synthase C
YPD4_0903	PF00849	RNA pseudouridylate synthase
YPD4_0904	PF00258	Flavodoxin
YPD4_0905	PF11944	YPD4_0905
YPD4_0906	PF00132	Bacterial transferase hexapeptide (six repeats)
YPD4_0906	PF14602	Hexapeptide repeat of succinyl-transferase
YPD4_0906	PF14805	Tetrahydrodipicolinate N-succinyltransferase N-terminal
YPD4_0907	PF01842	ACT domain
YPD4_0907	PF01909	Nucleotidyltransferase domain
YPD4_0907	PF01966	HD domain
YPD4_0907	PF08335	GlnD PII-uridylyltransferase
YPD4_0908	PF00557	Metallopeptidase family M24
YPD4_0909	PF00318	Ribosomal protein S2
YPD4_0910	PF00889	Elongation factor TS
YPD4_0911	PF00889	Elongation factor TS
YPD4_0912	PF00696	Amino acid kinase family
YPD4_0913	PF01765	Ribosome recycling factor
YPD4_0914	PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
YPD4_0914	PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal
YPD4_0914	PF13288	DXP reductoisomerase C-terminal domain
YPD4_0915	PF01255	Putative undecaprenyl diphosphate synthase
YPD4_0916	PF01148	Cytidylyltransferase family
YPD4_0917	PF00595	PDZ domain (Also known as DHR or GLGF)
YPD4_0917	PF02163	Peptidase family M50
YPD4_0918	PF07244	Surface antigen variable number repeat
YPD4_0919	PF01103	Surface antigen
YPD4_0920	PF03938	Outer membrane protein (OmpH-like)
YPD4_0921	PF00132	Bacterial transferase hexapeptide (six repeats)
YPD4_0921	PF04613	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
YPD4_0922	PF07977	FabA-like domain
YPD4_0923	PF00132	Bacterial transferase hexapeptide (six repeats)
YPD4_0923	PF13720	Udp N-acetylglucosamine O-acyltransferase; Domain 2
YPD4_0924	PF02684	YPD4_0924
YPD4_0925	PF01351	Ribonuclease HII
YPD4_0926	PF01336	OB-fold nucleic acid binding domain
YPD4_0926	PF02811	PHP domain
YPD4_0926	PF07733	Bacterial DNA polymerase III alpha subunit
YPD4_0926	PF14579	Helix-hairpin-helix motif
YPD4_0927	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
YPD4_0928	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YPD4_0929	PF01171	PP-loop family
YPD4_0929	PF09179	TilS substrate binding domain
YPD4_0929	PF11734	TilS substrate C-terminal domain
YPD4_0930	PF00034	Cytochrome c
YPD4_0931	PF07152	YaeQ protein
YPD4_0932	PF00472	RF-1 domain
YPD4_0933	PF04170	NlpE N-terminal domain
YPD4_0933	PF17185	YPD4_0933
YPD4_0934	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
YPD4_0934	PF03129	Anticodon binding domain
YPD4_0934	PF04073	Aminoacyl-tRNA editing domain
YPD4_0935	PF01980	Uncharacterised protein family UPF0066
YPD4_0936	PF03180	NLPA lipoprotein
YPD4_0937	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_0938	PF00005	ABC transporter
YPD4_0939	PF13242	HAD-hyrolase-like
YPD4_0940	PF00248	Aldo/keto reductase family
YPD4_0942	PF03372	Endonuclease/Exonuclease/phosphatase family
YPD4_0943	PF01464	Transglycosylase SLT domain
YPD4_0943	PF01476	LysM domain
YPD4_0944	PF00753	Metallo-beta-lactamase superfamily
YPD4_0944	PF16123	YPD4_0944
YPD4_0945	PF08241	Methyltransferase domain
YPD4_0946	PF00075	RNase H
YPD4_0947	PF00929	Exonuclease
YPD4_0948	PF02133	Permease for cytosine/purines, uracil, thiamine, allantoin
YPD4_0949	PF01695	IstB-like ATP binding protein
YPD4_0950	PF00665	Integrase core domain
YPD4_0950	PF02796	Helix-turn-helix domain of resolvase
YPD4_0951	PF13481	AAA domain
YPD4_0952	PF13362	Toprim domain
YPD4_0953	PF12834	YPD4_0953
YPD4_0953	PF12835	Integrase
YPD4_0955	PF14130	YPD4_0955
YPD4_0956	PF00589	Phage integrase family
YPD4_0956	PF13356	Domain of unknown function (DUF4102)
YPD4_0957	PF01797	Transposase IS200 like
YPD4_0958	PF01668	SmpB protein
YPD4_0959	PF03364	Polyketide cyclase / dehydrase and lipid transport
YPD4_0960	PF04355	SmpA / OmlA family
YPD4_0961	PF02463	RecF/RecN/SMC N terminal domain
YPD4_0962	PF01513	ATP-NAD kinase
YPD4_0963	PF01025	GrpE
YPD4_0964	PF00285	Citrate synthase
YPD4_0966	PF00890	FAD binding domain
YPD4_0966	PF02910	Fumarate reductase flavoprotein C-term
YPD4_0967	PF13085	2Fe-2S iron-sulfur cluster binding domain
YPD4_0967	PF13534	4Fe-4S dicluster domain
YPD4_0968	PF00676	Dehydrogenase E1 component
YPD4_0968	PF02779	Transketolase, pyrimidine binding domain
YPD4_0968	PF16078	YPD4_0968
YPD4_0968	PF16870	YPD4_0968
YPD4_0969	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
YPD4_0969	PF00364	Biotin-requiring enzyme
YPD4_0969	PF02817	e3 binding domain
YPD4_0970	PF00549	CoA-ligase
YPD4_0970	PF08442	ATP-grasp domain
YPD4_0971	PF00549	CoA-ligase
YPD4_0971	PF02629	CoA binding domain
YPD4_0972	PF01654	YPD4_0972
YPD4_0973	PF02322	YPD4_0973
YPD4_0974	PF01618	YPD4_0974
YPD4_0975	PF02472	Biopolymer transport protein ExbD/TolR
YPD4_0976	PF06519	TolA C-terminal
YPD4_0977	PF04052	TolB amino-terminal domain
YPD4_0977	PF07676	WD40-like Beta Propeller Repeat
YPD4_0978	PF00691	OmpA family
YPD4_0979	PF13174	Tetratricopeptide repeat
YPD4_0979	PF13432	Tetratricopeptide repeat
YPD4_0979	PF16331	YPD4_0979
YPD4_0980	PF02445	Quinolinate synthetase A protein
YPD4_0981	PF04973	YPD4_0981
YPD4_0982	PF01545	Cation efflux family
YPD4_0983	PF00793	DAHP synthetase I family
YPD4_0984	PF01695	IstB-like ATP binding protein
YPD4_0985	PF00665	Integrase core domain
YPD4_0986	PF00300	Histidine phosphatase superfamily (branch 1)
YPD4_0987	PF07769	YPD4_0987
YPD4_0988	PF01263	Aldose 1-epimerase
YPD4_0989	PF00288	GHMP kinases N terminal domain
YPD4_0989	PF08544	GHMP kinases C terminal
YPD4_0989	PF10509	Galactokinase galactose-binding signature
YPD4_0990	PF01087	Galactose-1-phosphate uridyl transferase, N-terminal domain
YPD4_0990	PF02744	Galactose-1-phosphate uridyl transferase, C-terminal domain
YPD4_0991	PF16363	YPD4_0991
YPD4_0992	PF02517	CAAX protease self-immunity
YPD4_0993	PF00005	ABC transporter
YPD4_0994	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_0994	PF03459	TOBE domain
YPD4_0995	PF13531	Bacterial extracellular solute-binding protein
YPD4_0996	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_0997	PF00005	ABC transporter
YPD4_0997	PF03459	TOBE domain
YPD4_0998	PF08282	haloacid dehalogenase-like hydrolase
YPD4_0999	PF10282	Lactonase, 7-bladed beta-propeller
YPD4_1000	PF00202	Aminotransferase class-III
YPD4_1001	PF00202	Aminotransferase class-III
YPD4_1002	PF04055	Radical SAM superfamily
YPD4_1002	PF06968	Biotin and Thiamin Synthesis associated domain
YPD4_1003	PF00155	Aminotransferase class I and II
YPD4_1004	PF08241	Methyltransferase domain
YPD4_1005	PF13500	AAA domain
YPD4_1006	PF00005	ABC transporter
YPD4_1007	PF00271	Helicase conserved C-terminal domain
YPD4_1007	PF02151	UvrB/uvrC motif
YPD4_1007	PF04851	Type III restriction enzyme, res subunit
YPD4_1007	PF12344	Ultra-violet resistance protein B
YPD4_1008	PF01933	Uncharacterised protein family UPF0052
YPD4_1009	PF04055	Radical SAM superfamily
YPD4_1009	PF06463	Molybdenum Cofactor Synthesis C
YPD4_1009	PF13353	4Fe-4S single cluster domain
YPD4_1010	PF01967	MoaC family
YPD4_1011	PF02391	MoaE protein
YPD4_1012	PF01027	Inhibitor of apoptosis-promoting Bax1
YPD4_1013	PF01797	Transposase IS200 like
YPD4_1014	PF00732	GMC oxidoreductase
YPD4_1014	PF05199	GMC oxidoreductase
YPD4_1015	PF00171	Aldehyde dehydrogenase family
YPD4_1016	PF00440	Bacterial regulatory proteins, tetR family
YPD4_1016	PF13977	Bacterial transcriptional repressor
YPD4_1017	PF02028	BCCT family transporter
YPD4_1018	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_1018	PF03466	LysR substrate binding domain
YPD4_1019	PF00892	EamA-like transporter family
YPD4_1020	PF01048	Phosphorylase superfamily
YPD4_1021	PF03825	YPD4_1021
YPD4_1022	PF01797	Transposase IS200 like
YPD4_1023	PF03825	YPD4_1023
YPD4_1024	PF13801	Heavy-metal resistance
YPD4_1025	PF00512	His Kinase A (phospho-acceptor) domain
YPD4_1025	PF00989	PAS fold
YPD4_1025	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_1025	PF17203	YPD4_1025
YPD4_1026	PF00072	Response regulator receiver domain
YPD4_1026	PF00158	Sigma-54 interaction domain
YPD4_1026	PF02954	Bacterial regulatory protein, Fis family
YPD4_1027	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
YPD4_1028	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_1028	PF03466	LysR substrate binding domain
YPD4_1029	PF07110	EthD domain
YPD4_1030	PF12698	ABC-2 family transporter protein
YPD4_1031	PF12698	ABC-2 family transporter protein
YPD4_1032	PF00005	ABC transporter
YPD4_1033	PF16576	YPD4_1033
YPD4_1034	PF00440	Bacterial regulatory proteins, tetR family
YPD4_1034	PF09209	Domain of unknown function (DUF1956)
YPD4_1035	PF00270	DEAD/DEAH box helicase
YPD4_1035	PF00271	Helicase conserved C-terminal domain
YPD4_1038	PF00872	YPD4_1038
YPD4_1039	PF00872	YPD4_1039
YPD4_1040	PF01548	YPD4_1040
YPD4_1041	PF00270	DEAD/DEAH box helicase
YPD4_1041	PF00271	Helicase conserved C-terminal domain
YPD4_1042	PF01797	Transposase IS200 like
YPD4_1044	PF01207	Dihydrouridine synthase (Dus)
YPD4_1045	PF00768	D-alanyl-D-alanine carboxypeptidase
YPD4_1046	PF01565	FAD binding domain
YPD4_1046	PF09330	D-lactate dehydrogenase, membrane binding
YPD4_1047	PF01928	CYTH domain
YPD4_1048	PF01844	HNH endonuclease
YPD4_1049	PF05076	Suppressor of fused protein (SUFU)
YPD4_1050	PF00005	ABC transporter
YPD4_1051	PF12974	ABC transporter, phosphonate, periplasmic substrate-binding protein
YPD4_1052	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_1053	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_1054	PF07308	YPD4_1054
YPD4_1055	PF13433	Periplasmic binding protein domain
YPD4_1056	PF02653	YPD4_1056
YPD4_1056	PF13646	HEAT repeats
YPD4_1057	PF02653	YPD4_1057
YPD4_1058	PF00005	ABC transporter
YPD4_1058	PF12399	Branched-chain amino acid ATP-binding cassette transporter
YPD4_1059	PF00005	ABC transporter
YPD4_1060	PF13640	2OG-Fe(II) oxygenase superfamily
YPD4_1061	PF00282	Pyridoxal-dependent decarboxylase conserved domain
YPD4_1062	PF00581	Rhodanese-like domain
YPD4_1063	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
YPD4_1064	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
YPD4_1065	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_1066	PF00005	ABC transporter
YPD4_1067	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_1068	PF13520	Amino acid permease
YPD4_1069	PF01276	Orn/Lys/Arg decarboxylase, major domain
YPD4_1069	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
YPD4_1069	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
YPD4_1070	PF00892	EamA-like transporter family
YPD4_1071	PF00267	Gram-negative porin
YPD4_1072	PF06733	DEAD_2
YPD4_1072	PF13307	Helicase C-terminal domain
YPD4_1073	PF00199	Catalase
YPD4_1073	PF06628	Catalase-related immune-responsive
YPD4_1074	PF07437	YPD4_1074
YPD4_1075	PF03222	Tryptophan/tyrosine permease family
YPD4_1076	PF00994	Probable molybdopterin binding domain
YPD4_1077	PF03974	Ecotin
YPD4_1078	PF00268	Ribonucleotide reductase, small chain
YPD4_1079	PF00317	Ribonucleotide reductase, all-alpha domain
YPD4_1079	PF02867	Ribonucleotide reductase, barrel domain
YPD4_1079	PF03477	ATP cone domain
YPD4_1080	PF13489	Methyltransferase domain
YPD4_1081	PF00521	DNA gyrase/topoisomerase IV, subunit A
YPD4_1081	PF03989	DNA gyrase C-terminal domain, beta-propeller
YPD4_1082	PF00072	Response regulator receiver domain
YPD4_1082	PF00512	His Kinase A (phospho-acceptor) domain
YPD4_1082	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_1082	PF09456	RcsC Alpha-Beta-Loop (ABL)
YPD4_1083	PF00072	Response regulator receiver domain
YPD4_1083	PF00196	Bacterial regulatory proteins, luxR family
YPD4_1084	PF01627	Hpt domain
YPD4_1084	PF16359	YPD4_1084
YPD4_1085	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_1086	PF07690	Major Facilitator Superfamily
YPD4_1087	PF00267	Gram-negative porin
YPD4_1088	PF01797	Transposase IS200 like
YPD4_1089	PF00144	Beta-lactamase
YPD4_1090	PF13347	MFS/sugar transport protein
YPD4_1091	PF12706	Beta-lactamase superfamily domain
YPD4_1092	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPD4_1092	PF00672	HAMP domain
YPD4_1092	PF02743	Cache domain
YPD4_1093	PF01278	Omptin family
YPD4_1094	PF00717	Peptidase S24-like
YPD4_1094	PF01381	Helix-turn-helix
YPD4_1095	PF06530	YPD4_1095
YPD4_1096	PF07005	Protein of unknown function, DUF1537
YPD4_1096	PF17042	YPD4_1096
YPD4_1097	PF00596	Class II Aldolase and Adducin N-terminal domain
YPD4_1098	PF00455	YPD4_1098
YPD4_1098	PF08220	DeoR-like helix-turn-helix domain
YPD4_1099	PF01261	Xylose isomerase-like TIM barrel
YPD4_1101	PF04984	Phage tail sheath protein
YPD4_1101	PF17482	YPD4_1101
YPD4_1102	PF10618	YPD4_1102
YPD4_1104	PF07157	YPD4_1104
YPD4_1105	PF05954	Phage late control gene D protein (GPD)
YPD4_1106	PF06890	Bacteriophage Mu Gp45 protein
YPD4_1107	PF07409	YPD4_1107
YPD4_1108	PF04865	YPD4_1108
YPD4_1109	PF10076	YPD4_1109
YPD4_1110	PF07484	Phage Tail Collar Domain
YPD4_1111	PF01380	SIS domain
YPD4_1111	PF01418	Helix-turn-helix domain, rpiR family
YPD4_1112	PF00232	Glycosyl hydrolase family 1
YPD4_1115	PF12639	DNase/tRNase domain of colicin-like bacteriocin
YPD4_1117	PF00884	Sulfatase
YPD4_1117	PF11893	YPD4_1117
YPD4_1118	PF04245	YPD4_1118
YPD4_1119	PF01797	Transposase IS200 like
YPD4_1120	PF00271	Helicase conserved C-terminal domain
YPD4_1120	PF04851	Type III restriction enzyme, res subunit
YPD4_1121	PF00849	RNA pseudouridylate synthase
YPD4_1121	PF01479	S4 domain
YPD4_1122	PF07690	Major Facilitator Superfamily
YPD4_1123	PF13989	YPD4_1123
YPD4_1124	PF00005	ABC transporter
YPD4_1124	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YPD4_1125	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_1125	PF12911	YPD4_1125
YPD4_1126	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_1127	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPD4_1128	PF00563	EAL domain
YPD4_1128	PF12792	YPD4_1128
YPD4_1129	PF00877	NlpC/P60 family
YPD4_1130	PF01569	PAP2 superfamily
YPD4_1131	PF02492	CobW/HypB/UreG, nucleotide-binding domain
YPD4_1131	PF07683	Cobalamin synthesis protein cobW C-terminal domain
YPD4_1132	PF00392	Bacterial regulatory proteins, gntR family
YPD4_1132	PF07729	FCD domain
YPD4_1133	PF01232	Mannitol dehydrogenase Rossmann domain
YPD4_1133	PF08125	Mannitol dehydrogenase C-terminal domain
YPD4_1134	PF03786	D-mannonate dehydratase (UxuA)
YPD4_1135	PF01132	Elongation factor P (EF-P) OB domain
YPD4_1135	PF08207	Elongation factor P (EF-P) KOW-like domain
YPD4_1135	PF09285	Elongation factor P, C-terminal
YPD4_1136	PF03222	Tryptophan/tyrosine permease family
YPD4_1137	PF13561	Enoyl-(Acyl carrier protein) reductase
YPD4_1138	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YPD4_1138	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YPD4_1139	PF01557	Fumarylacetoacetate (FAA) hydrolase family
YPD4_1140	PF00171	Aldehyde dehydrogenase family
YPD4_1141	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPD4_1141	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPD4_1142	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
YPD4_1143	PF13407	Periplasmic binding protein domain
YPD4_1144	PF00005	ABC transporter
YPD4_1145	PF02653	YPD4_1145
YPD4_1146	PF00293	NUDIX domain
YPD4_1147	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YPD4_1147	PF00381	PTS HPr component phosphorylation site
YPD4_1148	PF00294	pfkB family carbohydrate kinase
YPD4_1149	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
YPD4_1149	PF02378	Phosphotransferase system, EIIC
YPD4_1150	PF00486	Transcriptional regulatory protein, C terminal
YPD4_1151	PF17550	YPD4_1151
YPD4_1153	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPD4_1153	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPD4_1154	PF00577	Outer membrane usher protein
YPD4_1154	PF13953	PapC C-terminal domain
YPD4_1154	PF13954	PapC N-terminal domain
YPD4_1155	PF01261	Xylose isomerase-like TIM barrel
YPD4_1156	PF03601	YPD4_1156
YPD4_1157	PF03601	YPD4_1157
YPD4_1158	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_1158	PF03466	LysR substrate binding domain
YPD4_1159	PF00324	Amino acid permease
YPD4_1160	PF01497	Periplasmic binding protein
YPD4_1161	PF01032	FecCD transport family
YPD4_1162	PF00005	ABC transporter
YPD4_1163	PF00593	TonB dependent receptor
YPD4_1163	PF07715	TonB-dependent Receptor Plug Domain
YPD4_1164	PF00043	Glutathione S-transferase, C-terminal domain
YPD4_1164	PF13417	Glutathione S-transferase, N-terminal domain
YPD4_1165	PF12710	haloacid dehalogenase-like hydrolase
YPD4_1166	PF03171	2OG-Fe(II) oxygenase superfamily
YPD4_1166	PF14226	non-haem dioxygenase in morphine synthesis N-terminal
YPD4_1167	PF03180	NLPA lipoprotein
YPD4_1168	PF00005	ABC transporter
YPD4_1168	PF09383	NIL domain
YPD4_1169	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_1170	PF00768	D-alanyl-D-alanine carboxypeptidase
YPD4_1170	PF07943	Penicillin-binding protein 5, C-terminal domain
YPD4_1171	PF03222	Tryptophan/tyrosine permease family
YPD4_1172	PF00455	YPD4_1172
YPD4_1172	PF08220	DeoR-like helix-turn-helix domain
YPD4_1173	PF01791	DeoC/LacD family aldolase
YPD4_1174	PF01569	PAP2 superfamily
YPD4_1175	PF01569	PAP2 superfamily
YPD4_1176	PF02080	TrkA-C domain
YPD4_1176	PF06826	YPD4_1176
YPD4_1177	PF10722	Putative bacterial sensory transduction regulator
YPD4_1178	PF13416	Bacterial extracellular solute-binding protein
YPD4_1179	PF00005	ABC transporter
YPD4_1179	PF08402	TOBE domain
YPD4_1180	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_1181	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_1182	PF10767	YPD4_1182
YPD4_1184	PF05958	tRNA (Uracil-5-)-methyltransferase
YPD4_1185	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPD4_1186	PF01145	SPFH domain / Band 7 family
YPD4_1187	PF01497	Periplasmic binding protein
YPD4_1188	PF01032	FecCD transport family
YPD4_1189	PF01032	FecCD transport family
YPD4_1190	PF00005	ABC transporter
YPD4_1191	PF03059	Nicotianamine synthase protein
YPD4_1192	PF10100	YPD4_1192
YPD4_1193	PF00892	EamA-like transporter family
YPD4_1194	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_1195	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_1196	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPD4_1197	PF00005	ABC transporter
YPD4_1198	PF01817	Chorismate mutase type II
YPD4_1199	PF12883	Protein of unknown function (DUF3828)
YPD4_1200	PF01370	NAD dependent epimerase/dehydratase family
YPD4_1201	PF11066	YPD4_1201
YPD4_1201	PF13460	NADH(P)-binding
YPD4_1202	PF01212	Beta-eliminating lyase
YPD4_1203	PF00205	Thiamine pyrophosphate enzyme, central domain
YPD4_1203	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPD4_1203	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YPD4_1204	PF00111	2Fe-2S iron-sulfur cluster binding domain
YPD4_1204	PF00175	Oxidoreductase NAD-binding domain
YPD4_1204	PF00970	Oxidoreductase FAD-binding domain
YPD4_1205	PF03063	Prismane/CO dehydrogenase family
YPD4_1206	PF03956	YPD4_1206
YPD4_1207	PF11398	Protein of unknown function (DUF2813)
YPD4_1208	PF04393	YPD4_1208
YPD4_1209	PF16576	YPD4_1209
YPD4_1210	PF00005	ABC transporter
YPD4_1210	PF02687	YPD4_1210
YPD4_1210	PF12704	MacB-like periplasmic core domain
YPD4_1211	PF02617	ATP-dependent Clp protease adaptor protein ClpS
YPD4_1212	PF00004	ATPase family associated with various cellular activities (AAA)
YPD4_1212	PF02861	Clp amino terminal domain
YPD4_1212	PF07724	AAA domain (Cdc48 subfamily)
YPD4_1212	PF10431	C-terminal, D2-small domain, of ClpB protein
YPD4_1213	PF01797	Transposase IS200 like
YPD4_1214	PF03588	Leucyl/phenylalanyl-tRNA protein transferase
YPD4_1215	PF00005	ABC transporter
YPD4_1215	PF00664	ABC transporter transmembrane region
YPD4_1216	PF00005	ABC transporter
YPD4_1216	PF00664	ABC transporter transmembrane region
YPD4_1217	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPD4_1218	PF01037	AsnC family
YPD4_1218	PF13412	Winged helix-turn-helix DNA-binding
YPD4_1219	PF01580	FtsK/SpoIIIE family
YPD4_1219	PF09397	Ftsk gamma domain
YPD4_1219	PF13491	YPD4_1219
YPD4_1220	PF03548	Outer membrane lipoprotein carrier protein LolA
YPD4_1221	PF00004	ATPase family associated with various cellular activities (AAA)
YPD4_1221	PF12002	MgsA AAA+ ATPase C terminal
YPD4_1221	PF16193	YPD4_1221
YPD4_1222	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
YPD4_1222	PF02403	Seryl-tRNA synthetase N-terminal domain
YPD4_1223	PF07690	Major Facilitator Superfamily
YPD4_1224	PF04055	Radical SAM superfamily
YPD4_1224	PF13353	4Fe-4S single cluster domain
YPD4_1225	PF01755	YPD4_1225
YPD4_1226	PF01228	Glycine radical
YPD4_1226	PF02901	Pyruvate formate lyase
YPD4_1227	PF02901	Pyruvate formate lyase
YPD4_1228	PF01226	Formate/nitrite transporter
YPD4_1229	PF02624	YcaO-like family
YPD4_1230	PF00710	Asparaginase
YPD4_1231	PF03895	YadA-like C-terminal region
YPD4_1232	PF03895	YadA-like C-terminal region
YPD4_1233	PF00266	Aminotransferase class-V
YPD4_1234	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
YPD4_1235	PF02224	Cytidylate kinase
YPD4_1236	PF00575	S1 RNA binding domain
YPD4_1237	PF00753	Metallo-beta-lactamase superfamily
YPD4_1237	PF03772	YPD4_1237
YPD4_1237	PF13567	YPD4_1237
YPD4_1238	PF00005	ABC transporter
YPD4_1238	PF00664	ABC transporter transmembrane region
YPD4_1239	PF02606	Tetraacyldisaccharide-1-P 4'-kinase
YPD4_1240	PF07063	Domain of unknown function (DUF1338)
YPD4_1241	PF02348	Cytidylyltransferase
YPD4_1242	PF03881	Fructosamine kinase
YPD4_1243	PF13847	Methyltransferase domain
YPD4_1244	PF03882	KicB killing factor
YPD4_1244	PF17192	YPD4_1244
YPD4_1244	PF17193	YPD4_1244
YPD4_1245	PF04288	MukE-like family
YPD4_1246	PF04310	MukB N-terminal
YPD4_1246	PF13558	Putative exonuclease SbcCD, C subunit
YPD4_1246	PF16330	YPD4_1246
YPD4_1247	PF01797	Transposase IS200 like
YPD4_1248	PF01471	Putative peptidoglycan binding domain
YPD4_1249	PF03734	L,D-transpeptidase catalytic domain
YPD4_1250	PF05951	YPD4_1250
YPD4_1251	PF00753	Metallo-beta-lactamase superfamily
YPD4_1252	PF00155	Aminotransferase class I and II
YPD4_1253	PF00267	Gram-negative porin
YPD4_1254	PF00152	tRNA synthetases class II (D, K and N)
YPD4_1254	PF01336	OB-fold nucleic acid binding domain
YPD4_1255	PF04095	Nicotinate phosphoribosyltransferase (NAPRTase) family
YPD4_1256	PF01433	Peptidase family M1
YPD4_1256	PF11940	Domain of unknown function (DUF3458)
YPD4_1256	PF17432	YPD4_1256
YPD4_1257	PF17432	YPD4_1257
YPD4_1258	PF01180	Dihydroorotate dehydrogenase
YPD4_1259	PF07126	YPD4_1259
YPD4_1260	PF00111	2Fe-2S iron-sulfur cluster binding domain
YPD4_1260	PF03473	MOSC domain
YPD4_1260	PF03476	MOSC N-terminal beta barrel domain
YPD4_1261	PF01170	Putative RNA methylase family UPF0020
YPD4_1261	PF02926	THUMP domain
YPD4_1261	PF10672	S-adenosylmethionine-dependent methyltransferase
YPD4_1262	PF00005	ABC transporter
YPD4_1262	PF12848	ABC transporter
YPD4_1262	PF16326	YPD4_1262
YPD4_1263	PF04403	YPD4_1263
YPD4_1264	PF02470	YPD4_1264
YPD4_1265	PF03886	Protein of unknown function (DUF330)
YPD4_1266	PF01797	Transposase IS200 like
YPD4_1267	PF00109	Beta-ketoacyl synthase, N-terminal domain
YPD4_1267	PF02801	Beta-ketoacyl synthase, C-terminal domain
YPD4_1268	PF01695	IstB-like ATP binding protein
YPD4_1269	PF00665	Integrase core domain
YPD4_1269	PF02796	Helix-turn-helix domain of resolvase
YPD4_1270	PF00109	Beta-ketoacyl synthase, N-terminal domain
YPD4_1271	PF07977	FabA-like domain
YPD4_1272	PF05362	Lon protease (S16) C-terminal proteolytic domain
YPD4_1272	PF13654	AAA domain
YPD4_1273	PF06303	Organiser of macrodomain of Terminus of chromosome
YPD4_1273	PF17414	YPD4_1273
YPD4_1274	PF01797	Transposase IS200 like
YPD4_1275	PF00691	OmpA family
YPD4_1275	PF01389	OmpA-like transmembrane domain
YPD4_1276	PF03846	Cell division inhibitor SulA
YPD4_1277	PF04993	TfoX N-terminal domain
YPD4_1277	PF04994	TfoX C-terminal domain
YPD4_1278	PF12805	YPD4_1278
YPD4_1278	PF13515	YPD4_1278
YPD4_1279	PF03733	YPD4_1279
YPD4_1280	PF00580	UvrD/REP helicase N-terminal domain
YPD4_1280	PF12462	YPD4_1280
YPD4_1280	PF13361	UvrD-like helicase C-terminal domain
YPD4_1281	PF02142	MGS-like domain
YPD4_1282	PF09829	YPD4_1282
YPD4_1283	PF13380	CoA binding domain
YPD4_1284	PF08755	Hemimethylated DNA-binding protein YccV like
YPD4_1285	PF10672	S-adenosylmethionine-dependent methyltransferase
YPD4_1286	PF04358	DsrC like protein
YPD4_1289	PF01565	FAD binding domain
YPD4_1289	PF13480	Acetyltransferase (GNAT) domain
YPD4_1290	PF13561	Enoyl-(Acyl carrier protein) reductase
YPD4_1291	PF07977	FabA-like domain
YPD4_1292	PF00109	Beta-ketoacyl synthase, N-terminal domain
YPD4_1292	PF02801	Beta-ketoacyl synthase, C-terminal domain
YPD4_1293	PF13561	Enoyl-(Acyl carrier protein) reductase
YPD4_1294	PF01154	Hydroxymethylglutaryl-coenzyme A synthase N terminal
YPD4_1294	PF08540	Hydroxymethylglutaryl-coenzyme A synthase C terminal
YPD4_1295	PF00378	Enoyl-CoA hydratase/isomerase family
YPD4_1296	PF00378	Enoyl-CoA hydratase/isomerase family
YPD4_1297	PF13561	Enoyl-(Acyl carrier protein) reductase
YPD4_1298	PF13924	YPD4_1298
YPD4_1299	PF00698	Acyl transferase domain
YPD4_1300	PF05591	YPD4_1300
YPD4_1301	PF05943	YPD4_1301
YPD4_1302	PF05936	YPD4_1302
YPD4_1303	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
YPD4_1304	PF00691	OmpA family
YPD4_1305	PF05638	Protein of unknown function (DUF796)
YPD4_1306	PF00004	ATPase family associated with various cellular activities (AAA)
YPD4_1306	PF07724	AAA domain (Cdc48 subfamily)
YPD4_1306	PF10431	C-terminal, D2-small domain, of ClpB protein
YPD4_1307	PF05954	Phage late control gene D protein (GPD)
YPD4_1307	PF10106	YPD4_1307
YPD4_1307	PF13296	YPD4_1307
YPD4_1309	PF10106	YPD4_1309
YPD4_1310	PF01551	Peptidase family M23
YPD4_1312	PF01551	Peptidase family M23
YPD4_1315	PF06744	YPD4_1315
YPD4_1315	PF06761	YPD4_1315
YPD4_1316	PF06812	YPD4_1316
YPD4_1316	PF16989	YPD4_1316
YPD4_1317	PF05488	PAAR motif
YPD4_1317	PF15607	YPD4_1317
YPD4_1319	PF05947	YPD4_1319
YPD4_1320	PF06996	YPD4_1320
YPD4_1321	PF12790	Type VI secretion lipoprotein
YPD4_1322	PF04965	Gene 25-like lysozyme
YPD4_1323	PF06812	YPD4_1323
YPD4_1323	PF12486	YPD4_1323
YPD4_1324	PF16809	YPD4_1324
YPD4_1325	PF00005	ABC transporter
YPD4_1325	PF12848	ABC transporter
YPD4_1326	PF16809	YPD4_1326
YPD4_1327	PF00872	YPD4_1327
YPD4_1328	PF00899	ThiF family
YPD4_1329	PF00994	Probable molybdopterin binding domain
YPD4_1329	PF03453	MoeA N-terminal region (domain I and II)
YPD4_1329	PF03454	MoeA C-terminal region (domain IV)
YPD4_1330	PF04055	Radical SAM superfamily
YPD4_1331	PF00005	ABC transporter
YPD4_1332	PF13437	HlyD family secretion protein
YPD4_1334	PF00756	Putative esterase
YPD4_1335	PF00107	Zinc-binding dehydrogenase
YPD4_1335	PF08240	Alcohol dehydrogenase GroES-like domain
YPD4_1336	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_1336	PF03466	LysR substrate binding domain
YPD4_1337	PF06779	YPD4_1337
YPD4_1338	PF01227	GTP cyclohydrolase I
YPD4_1339	PF04235	YPD4_1339
YPD4_1340	PF13407	Periplasmic binding protein domain
YPD4_1341	PF00005	ABC transporter
YPD4_1342	PF02653	YPD4_1342
YPD4_1343	PF02698	DUF218 domain
YPD4_1344	PF00390	Malic enzyme, N-terminal domain
YPD4_1344	PF03949	Malic enzyme, NAD binding domain
YPD4_1345	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
YPD4_1345	PF08211	Cytidine and deoxycytidylate deaminase zinc-binding region
YPD4_1346	PF04172	YPD4_1346
YPD4_1347	PF03788	YPD4_1347
YPD4_1348	PF07690	Major Facilitator Superfamily
YPD4_1349	PF08309	YPD4_1349
YPD4_1350	PF13407	Periplasmic binding protein domain
YPD4_1352	PF01797	Transposase IS200 like
YPD4_1353	PF01588	Putative tRNA binding domain
YPD4_1353	PF09334	tRNA synthetases class I (M)
YPD4_1354	PF10609	ParA/MinD ATPase like
YPD4_1355	PF00485	Phosphoribulokinase / Uridine kinase family
YPD4_1356	PF00692	dUTPase
YPD4_1357	PF05170	YPD4_1357
YPD4_1357	PF13502	YPD4_1357
YPD4_1358	PF00571	CBS domain
YPD4_1358	PF03471	Transporter associated domain
YPD4_1358	PF03741	YPD4_1358
YPD4_1359	PF06276	Ferric iron reductase FhuF-like transporter
YPD4_1359	PF11575	YPD4_1359
YPD4_1360	PF00282	Pyridoxal-dependent decarboxylase conserved domain
YPD4_1361	PF13434	L-lysine 6-monooxygenase (NADPH-requiring)
YPD4_1362	PF13523	Acetyltransferase (GNAT) domain
YPD4_1363	PF04183	IucA / IucC family
YPD4_1363	PF06276	Ferric iron reductase FhuF-like transporter
YPD4_1364	PF00005	ABC transporter
YPD4_1365	PF01032	FecCD transport family
YPD4_1366	PF01032	FecCD transport family
YPD4_1367	PF01497	Periplasmic binding protein
YPD4_1368	PF00593	TonB dependent receptor
YPD4_1368	PF07715	TonB-dependent Receptor Plug Domain
YPD4_1369	PF04183	IucA / IucC family
YPD4_1369	PF06276	Ferric iron reductase FhuF-like transporter
YPD4_1370	PF00483	Nucleotidyl transferase
YPD4_1371	PF00483	Nucleotidyl transferase
YPD4_1372	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
YPD4_1372	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
YPD4_1373	PF01502	Phosphoribosyl-AMP cyclohydrolase
YPD4_1373	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
YPD4_1374	PF00977	Histidine biosynthesis protein
YPD4_1375	PF00977	Histidine biosynthesis protein
YPD4_1376	PF00117	Glutamine amidotransferase class-I
YPD4_1377	PF00475	Imidazoleglycerol-phosphate dehydratase
YPD4_1377	PF13242	HAD-hyrolase-like
YPD4_1378	PF00155	Aminotransferase class I and II
YPD4_1379	PF00815	Histidinol dehydrogenase
YPD4_1380	PF01634	ATP phosphoribosyltransferase
YPD4_1380	PF08029	HisG, C-terminal domain
YPD4_1381	PF01370	NAD dependent epimerase/dehydratase family
YPD4_1382	PF16695	YPD4_1382
YPD4_1383	PF02653	YPD4_1383
YPD4_1384	PF00005	ABC transporter
YPD4_1385	PF00005	ABC transporter
YPD4_1386	PF00465	Iron-containing alcohol dehydrogenase
YPD4_1387	PF13520	Amino acid permease
YPD4_1388	PF00929	Exonuclease
YPD4_1388	PF08411	Exonuclease C-terminal
YPD4_1389	PF07993	Male sterility protein
YPD4_1390	PF00872	YPD4_1390
YPD4_1391	PF02369	Bacterial Ig-like domain (group 1)
YPD4_1391	PF09134	Invasin, domain 3
YPD4_1391	PF11924	Protein of unknown function (DUF3442)
YPD4_1392	PF07690	Major Facilitator Superfamily
YPD4_1393	PF04134	YPD4_1393
YPD4_1394	PF13561	Enoyl-(Acyl carrier protein) reductase
YPD4_1395	PF01557	Fumarylacetoacetate (FAA) hydrolase family
YPD4_1396	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
YPD4_1396	PF13378	Enolase C-terminal domain-like
YPD4_1397	PF01070	FMN-dependent dehydrogenase
YPD4_1398	PF00764	Arginosuccinate synthase
YPD4_1399	PF01554	MatE
YPD4_1400	PF07690	Major Facilitator Superfamily
YPD4_1401	PF01522	Polysaccharide deacetylase
YPD4_1403	PF09831	YPD4_1403
YPD4_1404	PF00072	Response regulator receiver domain
YPD4_1404	PF00196	Bacterial regulatory proteins, luxR family
YPD4_1405	PF06808	YPD4_1405
YPD4_1406	PF04290	YPD4_1406
YPD4_1407	PF03480	Bacterial extracellular solute-binding protein, family 7
YPD4_1408	PF01648	4'-phosphopantetheinyl transferase superfamily
YPD4_1409	PF02065	Melibiase
YPD4_1409	PF16875	YPD4_1409
YPD4_1410	PF01306	LacY proton/sugar symporter
YPD4_1411	PF00872	YPD4_1411
YPD4_1412	PF13419	Haloacid dehalogenase-like hydrolase
YPD4_1413	PF14002	YPD4_1413
YPD4_1414	PF03881	Fructosamine kinase
YPD4_1415	PF00950	YPD4_1415
YPD4_1416	PF00950	YPD4_1416
YPD4_1417	PF00005	ABC transporter
YPD4_1418	PF01297	Periplasmic solute binding protein family
YPD4_1419	PF01464	Transglycosylase SLT domain
YPD4_1420	PF01914	YPD4_1420
YPD4_1421	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
YPD4_1421	PF02824	TGS domain
YPD4_1421	PF03129	Anticodon binding domain
YPD4_1421	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
YPD4_1422	PF00707	Translation initiation factor IF-3, C-terminal domain
YPD4_1423	PF00453	Ribosomal protein L20
YPD4_1424	PF01409	tRNA synthetases class II core domain (F)
YPD4_1424	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
YPD4_1425	PF01588	Putative tRNA binding domain
YPD4_1425	PF03147	Ferredoxin-fold anticodon binding domain
YPD4_1425	PF03483	B3/4 domain
YPD4_1425	PF03484	tRNA synthetase B5 domain
YPD4_1426	PF10697	YPD4_1426
YPD4_1427	PF01032	FecCD transport family
YPD4_1428	PF00255	Glutathione peroxidase
YPD4_1429	PF00005	ABC transporter
YPD4_1430	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
YPD4_1431	PF00535	Glycosyl transferase family 2
YPD4_1432	PF00551	Formyl transferase
YPD4_1432	PF01370	NAD dependent epimerase/dehydratase family
YPD4_1432	PF02911	Formyl transferase, C-terminal domain
YPD4_1433	PF01522	Polysaccharide deacetylase
YPD4_1434	PF02366	YPD4_1434
YPD4_1435	PF00892	EamA-like transporter family
YPD4_1437	PF00877	NlpC/P60 family
YPD4_1438	PF03099	Biotin/lipoate A/B protein ligase family
YPD4_1438	PF10437	Bacterial lipoate protein ligase C-terminus
YPD4_1439	PF02696	YPD4_1439
YPD4_1440	PF02696	YPD4_1440
YPD4_1441	PF00793	DAHP synthetase I family
YPD4_1442	PF03618	YPD4_1442
YPD4_1443	PF00391	PEP-utilising enzyme, mobile domain
YPD4_1443	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
YPD4_1443	PF02896	PEP-utilising enzyme, TIM barrel domain
YPD4_1444	PF01594	YPD4_1444
YPD4_1445	PF01565	FAD binding domain
YPD4_1445	PF02913	FAD linked oxidases, C-terminal domain
YPD4_1445	PF13183	4Fe-4S dicluster domain
YPD4_1446	PF03061	Thioesterase superfamily
YPD4_1447	PF01521	Iron-sulphur cluster biosynthesis
YPD4_1448	PF01458	Uncharacterized protein family (UPF0051)
YPD4_1449	PF00005	ABC transporter
YPD4_1450	PF01458	Uncharacterized protein family (UPF0051)
YPD4_1451	PF00266	Aminotransferase class-V
YPD4_1452	PF02657	Fe-S metabolism associated domain
YPD4_1453	PF03734	L,D-transpeptidase catalytic domain
YPD4_1454	PF01695	IstB-like ATP binding protein
YPD4_1455	PF00665	Integrase core domain
YPD4_1455	PF02796	Helix-turn-helix domain of resolvase
YPD4_1456	PF01797	Transposase IS200 like
YPD4_1457	PF00224	Pyruvate kinase, barrel domain
YPD4_1457	PF02887	Pyruvate kinase, alpha/beta domain
YPD4_1458	PF01554	MatE
YPD4_1459	PF01554	MatE
YPD4_1460	PF00677	Lumazine binding domain
YPD4_1461	PF02353	Mycolic acid cyclopropane synthetase
YPD4_1462	PF07690	Major Facilitator Superfamily
YPD4_1463	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_1463	PF03466	LysR substrate binding domain
YPD4_1464	PF00356	Bacterial regulatory proteins, lacI family
YPD4_1464	PF13377	Periplasmic binding protein-like domain
YPD4_1465	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
YPD4_1465	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
YPD4_1466	PF00877	NlpC/P60 family
YPD4_1467	PF00462	Glutaredoxin
YPD4_1468	PF00929	Exonuclease
YPD4_1469	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YPD4_1471	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
YPD4_1472	PF00440	Bacterial regulatory proteins, tetR family
YPD4_1472	PF16925	YPD4_1472
YPD4_1473	PF00884	Sulfatase
YPD4_1473	PF08019	YPD4_1473
YPD4_1474	PF00248	Aldo/keto reductase family
YPD4_1475	PF01047	MarR family
YPD4_1476	PF05433	YPD4_1476
YPD4_1477	PF03702	Uncharacterised protein family (UPF0075)
YPD4_1478	PF09864	Membrane-bound lysozyme-inhibitor of c-type lysozyme
YPD4_1479	PF01243	Pyridoxamine 5'-phosphate oxidase
YPD4_1479	PF10590	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
YPD4_1480	PF00579	tRNA synthetases class I (W and Y)
YPD4_1480	PF01479	S4 domain
YPD4_1481	PF08543	Phosphomethylpyrimidine kinase
YPD4_1482	PF00043	Glutathione S-transferase, C-terminal domain
YPD4_1482	PF02798	Glutathione S-transferase, N-terminal domain
YPD4_1483	PF06930	YPD4_1483
YPD4_1484	PF00854	POT family
YPD4_1486	PF00005	ABC transporter
YPD4_1487	PF00005	ABC transporter
YPD4_1487	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YPD4_1488	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_1488	PF12911	YPD4_1488
YPD4_1489	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_1490	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPD4_1491	PF01797	Transposase IS200 like
YPD4_1492	PF00158	Sigma-54 interaction domain
YPD4_1492	PF02954	Bacterial regulatory protein, Fis family
YPD4_1493	PF04012	YPD4_1493
YPD4_1494	PF04024	YPD4_1494
YPD4_1495	PF04317	YPD4_1495
YPD4_1496	PF04317	YPD4_1496
YPD4_1497	PF05128	YPD4_1497
YPD4_1498	PF08808	YPD4_1498
YPD4_1499	PF09722	YPD4_1499
YPD4_1500	PF00158	Sigma-54 interaction domain
YPD4_1500	PF00989	PAS fold
YPD4_1501	PF01797	Transposase IS200 like
YPD4_1502	PF08534	Redoxin
YPD4_1503	PF01695	IstB-like ATP binding protein
YPD4_1504	PF00665	Integrase core domain
YPD4_1504	PF02796	Helix-turn-helix domain of resolvase
YPD4_1505	PF05229	YPD4_1505
YPD4_1506	PF00577	Outer membrane usher protein
YPD4_1506	PF13953	PapC C-terminal domain
YPD4_1507	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPD4_1508	PF05229	YPD4_1508
YPD4_1509	PF05229	YPD4_1509
YPD4_1510	PF02470	YPD4_1510
YPD4_1511	PF04403	YPD4_1511
YPD4_1512	PF13185	GAF domain
YPD4_1513	PF04352	ProQ/FINO family
YPD4_1513	PF17516	YPD4_1513
YPD4_1514	PF00595	PDZ domain (Also known as DHR or GLGF)
YPD4_1514	PF03572	Peptidase family S41
YPD4_1514	PF11818	YPD4_1514
YPD4_1515	PF01435	Peptidase family M48
YPD4_1516	PF16970	YPD4_1516
YPD4_1517	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPD4_1517	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPD4_1518	PF00577	Outer membrane usher protein
YPD4_1518	PF13953	PapC C-terminal domain
YPD4_1518	PF13954	PapC N-terminal domain
YPD4_1519	PF00419	Fimbrial protein
YPD4_1520	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPD4_1520	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPD4_1521	PF07690	Major Facilitator Superfamily
YPD4_1522	PF07690	Major Facilitator Superfamily
YPD4_1523	PF14583	Oligogalacturonate lyase
YPD4_1524	PF01614	Bacterial transcriptional regulator
YPD4_1524	PF09339	IclR helix-turn-helix domain
YPD4_1525	PF01471	Putative peptidoglycan binding domain
YPD4_1525	PF01510	N-acetylmuramoyl-L-alanine amidase
YPD4_1526	PF00375	Sodium:dicarboxylate symporter family
YPD4_1527	PF04307	YPD4_1527
YPD4_1528	PF06178	Oligogalacturonate-specific porin protein (KdgM)
YPD4_1529	PF01547	Bacterial extracellular solute-binding protein
YPD4_1530	PF00005	ABC transporter
YPD4_1531	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_1532	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_1533	PF06917	Periplasmic pectate lyase
YPD4_1534	PF13561	Enoyl-(Acyl carrier protein) reductase
YPD4_1535	PF04962	KduI/IolB family
YPD4_1536	PF07883	Cupin domain
YPD4_1537	PF00872	YPD4_1537
YPD4_1538	PF00356	Bacterial regulatory proteins, lacI family
YPD4_1538	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YPD4_1539	PF00665	Integrase core domain
YPD4_1539	PF02796	Helix-turn-helix domain of resolvase
YPD4_1540	PF01695	IstB-like ATP binding protein
YPD4_1541	PF06167	Glucose-regulated metallo-peptidase M90
YPD4_1542	PF01163	RIO1 family
YPD4_1543	PF00005	ABC transporter
YPD4_1543	PF00664	ABC transporter transmembrane region
YPD4_1544	PF12833	Helix-turn-helix domain
YPD4_1545	PF00324	Amino acid permease
YPD4_1546	PF00324	Amino acid permease
YPD4_1547	PF07017	Antimicrobial peptide resistance and lipid A acylation protein PagP
YPD4_1548	PF02578	Multi-copper polyphenol oxidoreductase laccase
YPD4_1549	PF13847	Methyltransferase domain
YPD4_1550	PF00989	PAS fold
YPD4_1550	PF00990	GGDEF domain
YPD4_1550	PF13426	PAS domain
YPD4_1551	PF00593	TonB dependent receptor
YPD4_1551	PF07715	TonB-dependent Receptor Plug Domain
YPD4_1552	PF02659	YPD4_1552
YPD4_1553	PF06173	YPD4_1553
YPD4_1554	PF03613	YPD4_1554
YPD4_1555	PF03609	YPD4_1555
YPD4_1556	PF03610	PTS system fructose IIA component
YPD4_1556	PF03830	PTS system sorbose subfamily IIB component
YPD4_1557	PF00571	CBS domain
YPD4_1557	PF03471	Transporter associated domain
YPD4_1557	PF03741	YPD4_1557
YPD4_1558	PF01047	MarR family
YPD4_1559	PF01557	Fumarylacetoacetate (FAA) hydrolase family
YPD4_1560	PF01557	Fumarylacetoacetate (FAA) hydrolase family
YPD4_1561	PF00171	Aldehyde dehydrogenase family
YPD4_1562	PF02900	Catalytic LigB subunit of aromatic ring-opening dioxygenase
YPD4_1563	PF02962	5-carboxymethyl-2-hydroxymuconate isomerase
YPD4_1565	PF03328	HpcH/HpaI aldolase/citrate lyase family
YPD4_1566	PF07690	Major Facilitator Superfamily
YPD4_1566	PF11700	YPD4_1566
YPD4_1567	PF03241	4-hydroxyphenylacetate 3-hydroxylase C terminal
YPD4_1567	PF11794	4-hydroxyphenylacetate 3-hydroxylase N terminal
YPD4_1568	PF01613	Flavin reductase like domain
YPD4_1569	PF03313	YPD4_1569
YPD4_1569	PF03315	Serine dehydratase beta chain
YPD4_1570	PF00293	NUDIX domain
YPD4_1571	PF00425	chorismate binding enzyme
YPD4_1571	PF04715	Anthranilate synthase component I, N terminal region
YPD4_1572	PF02222	ATP-grasp domain
YPD4_1573	PF00270	DEAD/DEAH box helicase
YPD4_1573	PF00271	Helicase conserved C-terminal domain
YPD4_1573	PF03880	DbpA RNA binding domain
YPD4_1574	PF07130	YebG protein
YPD4_1575	PF04266	ASCH domain
YPD4_1576	PF13995	YebF-like protein
YPD4_1577	PF00326	Prolyl oligopeptidase family
YPD4_1577	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
YPD4_1578	PF00561	alpha/beta hydrolase fold
YPD4_1579	PF00210	Ferritin-like domain
YPD4_1580	PF04234	CopC domain
YPD4_1581	PF05425	YPD4_1581
YPD4_1582	PF10709	YPD4_1582
YPD4_1583	PF07377	Protein of unknown function (DUF1493)
YPD4_1585	PF01312	FlhB HrpN YscU SpaS Family
YPD4_1586	PF00771	FHIPEP family
YPD4_1587	PF06366	YPD4_1587
YPD4_1588	PF11924	Protein of unknown function (DUF3442)
YPD4_1589	PF01797	Transposase IS200 like
YPD4_1590	PF02369	Bacterial Ig-like domain (group 1)
YPD4_1590	PF07979	Intimin C-type lectin domain
YPD4_1590	PF09134	Invasin, domain 3
YPD4_1590	PF11924	Protein of unknown function (DUF3442)
YPD4_1591	PF05130	FlgN protein
YPD4_1592	PF04316	Anti-sigma-28 factor, FlgM
YPD4_1593	PF13144	SAF-like
YPD4_1594	PF00460	Flagella basal body rod protein
YPD4_1595	PF00460	Flagella basal body rod protein
YPD4_1595	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPD4_1596	PF03963	YPD4_1596
YPD4_1596	PF13860	FlgD Ig-like domain
YPD4_1596	PF13861	FlgD Tudor-like domain
YPD4_1597	PF00460	Flagella basal body rod protein
YPD4_1597	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPD4_1597	PF07559	Flagellar basal body protein FlaE
YPD4_1598	PF00460	Flagella basal body rod protein
YPD4_1599	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPD4_1600	PF02107	YPD4_1600
YPD4_1601	PF02119	YPD4_1601
YPD4_1602	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
YPD4_1602	PF10135	YPD4_1602
YPD4_1603	PF00460	Flagella basal body rod protein
YPD4_1603	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPD4_1604	PF00669	Bacterial flagellin N-terminal helical region
YPD4_1605	PF04198	Putative sugar-binding domain
YPD4_1606	PF00596	Class II Aldolase and Adducin N-terminal domain
YPD4_1606	PF13561	Enoyl-(Acyl carrier protein) reductase
YPD4_1607	PF02653	YPD4_1607
YPD4_1608	PF13407	Periplasmic binding protein domain
YPD4_1609	PF00005	ABC transporter
YPD4_1610	PF02653	YPD4_1610
YPD4_1611	PF00294	pfkB family carbohydrate kinase
YPD4_1612	PF15919	YPD4_1612
YPD4_1613	PF01311	YPD4_1613
YPD4_1614	PF00813	YPD4_1614
YPD4_1615	PF04347	YPD4_1615
YPD4_1616	PF01052	Surface presentation of antigens (SPOA)
YPD4_1616	PF16973	YPD4_1616
YPD4_1617	PF01052	Surface presentation of antigens (SPOA)
YPD4_1617	PF02154	Flagellar motor switch protein FliM
YPD4_1618	PF03748	YPD4_1618
YPD4_1619	PF02120	Flagellar hook-length control protein FliK
YPD4_1620	PF02050	Flagellar FliJ protein
YPD4_1621	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPD4_1622	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPD4_1623	PF02108	YPD4_1623
YPD4_1624	PF01706	FliG C-terminal domain
YPD4_1624	PF14841	FliG middle domain
YPD4_1624	PF14842	FliG N-terminal domain
YPD4_1625	PF01514	Secretory protein of YscJ/FliF family
YPD4_1625	PF08345	YPD4_1625
YPD4_1626	PF02049	YPD4_1626
YPD4_1627	PF00730	HhH-GPD superfamily base excision DNA repair protein
YPD4_1628	PF13487	HD domain
YPD4_1630	PF12833	Helix-turn-helix domain
YPD4_1631	PF02561	Flagellar protein FliS
YPD4_1632	PF02465	YPD4_1632
YPD4_1632	PF07195	YPD4_1632
YPD4_1632	PF07196	Flagellin hook IN motif
YPD4_1633	PF00669	Bacterial flagellin N-terminal helical region
YPD4_1633	PF00700	Bacterial flagellin C-terminal helical region
YPD4_1634	PF04539	Sigma-70 region 3
YPD4_1634	PF04542	Sigma-70 region 2
YPD4_1634	PF04545	Sigma-70, region 4
YPD4_1635	PF02899	Phage integrase, N-terminal SAM-like domain
YPD4_1636	PF00291	Pyridoxal-phosphate dependent enzyme
YPD4_1637	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPD4_1638	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_1639	PF00005	ABC transporter
YPD4_1641	PF00171	Aldehyde dehydrogenase family
YPD4_1641	PF01619	Proline dehydrogenase
YPD4_1641	PF14850	DNA-binding domain of Proline dehydrogenase
YPD4_1642	PF00474	Sodium:solute symporter family
YPD4_1643	PF03239	YPD4_1643
YPD4_1644	PF09375	Imelysin
YPD4_1644	PF13473	Cupredoxin-like domain
YPD4_1645	PF04261	Dyp-type peroxidase family
YPD4_1646	PF03358	NADPH-dependent FMN reductase
YPD4_1647	PF01344	Kelch motif
YPD4_1648	PF00324	Amino acid permease
YPD4_1649	PF13505	Outer membrane protein beta-barrel domain
YPD4_1650	PF06942	YPD4_1650
YPD4_1651	PF00072	Response regulator receiver domain
YPD4_1651	PF00196	Bacterial regulatory proteins, luxR family
YPD4_1652	PF01541	GIY-YIG catalytic domain
YPD4_1652	PF02151	UvrB/uvrC motif
YPD4_1652	PF08459	UvrC Helix-hairpin-helix N-terminal
YPD4_1652	PF14520	Helix-hairpin-helix domain
YPD4_1653	PF01066	CDP-alcohol phosphatidyltransferase
YPD4_1654	PF05638	Protein of unknown function (DUF796)
YPD4_1655	PF00665	Integrase core domain
YPD4_1656	PF01527	Transposase
YPD4_1657	PF10908	YPD4_1657
YPD4_1658	PF13676	TIR domain
YPD4_1659	PF00872	YPD4_1659
YPD4_1660	PF00872	YPD4_1660
YPD4_1663	PF00392	Bacterial regulatory proteins, gntR family
YPD4_1663	PF07702	UTRA domain
YPD4_1664	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPD4_1665	PF01547	Bacterial extracellular solute-binding protein
YPD4_1666	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_1667	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_1668	PF00005	ABC transporter
YPD4_1669	PF00665	Integrase core domain
YPD4_1669	PF02796	Helix-turn-helix domain of resolvase
YPD4_1670	PF01695	IstB-like ATP binding protein
YPD4_1671	PF11198	YPD4_1671
YPD4_1673	PF00593	TonB dependent receptor
YPD4_1673	PF07715	TonB-dependent Receptor Plug Domain
YPD4_1674	PF00501	AMP-binding enzyme
YPD4_1674	PF13193	AMP-binding enzyme C-terminal domain
YPD4_1675	PF00975	Thioesterase domain
YPD4_1676	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPD4_1677	PF00109	Beta-ketoacyl synthase, N-terminal domain
YPD4_1677	PF00550	Phosphopantetheine attachment site
YPD4_1677	PF00668	Condensation domain
YPD4_1677	PF00698	Acyl transferase domain
YPD4_1677	PF00975	Thioesterase domain
YPD4_1677	PF02801	Beta-ketoacyl synthase, C-terminal domain
YPD4_1677	PF08242	Methyltransferase domain
YPD4_1677	PF08659	KR domain
YPD4_1677	PF16197	YPD4_1677
YPD4_1678	PF00501	AMP-binding enzyme
YPD4_1678	PF00550	Phosphopantetheine attachment site
YPD4_1678	PF00668	Condensation domain
YPD4_1678	PF08242	Methyltransferase domain
YPD4_1679	PF12833	Helix-turn-helix domain
YPD4_1680	PF00005	ABC transporter
YPD4_1680	PF00664	ABC transporter transmembrane region
YPD4_1681	PF00005	ABC transporter
YPD4_1681	PF00664	ABC transporter transmembrane region
YPD4_1682	PF07690	Major Facilitator Superfamily
YPD4_1683	PF00425	chorismate binding enzyme
YPD4_1684	PF00589	Phage integrase family
YPD4_1684	PF13356	Domain of unknown function (DUF4102)
YPD4_1685	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPD4_1685	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPD4_1686	PF00419	Fimbrial protein
YPD4_1687	PF00419	Fimbrial protein
YPD4_1688	PF00577	Outer membrane usher protein
YPD4_1688	PF13953	PapC C-terminal domain
YPD4_1688	PF13954	PapC N-terminal domain
YPD4_1689	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPD4_1689	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPD4_1690	PF00419	Fimbrial protein
YPD4_1691	PF00072	Response regulator receiver domain
YPD4_1691	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPD4_1691	PF00512	His Kinase A (phospho-acceptor) domain
YPD4_1691	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_1692	PF00072	Response regulator receiver domain
YPD4_1692	PF00196	Bacterial regulatory proteins, luxR family
YPD4_1693	PF02550	Acetyl-CoA hydrolase/transferase N-terminal domain
YPD4_1693	PF13336	Acetyl-CoA hydrolase/transferase C-terminal domain
YPD4_1694	PF01575	MaoC like domain
YPD4_1695	PF03328	HpcH/HpaI aldolase/citrate lyase family
YPD4_1696	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_1696	PF03466	LysR substrate binding domain
YPD4_1699	PF07690	Major Facilitator Superfamily
YPD4_1700	PF04909	Amidohydrolase
YPD4_1701	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_1701	PF03466	LysR substrate binding domain
YPD4_1702	PF02508	YPD4_1702
YPD4_1703	PF00155	Aminotransferase class I and II
YPD4_1704	PF00324	Amino acid permease
YPD4_1705	PF00455	YPD4_1705
YPD4_1705	PF08220	DeoR-like helix-turn-helix domain
YPD4_1706	PF04960	Glutaminase
YPD4_1707	PF07690	Major Facilitator Superfamily
YPD4_1708	PF03239	YPD4_1708
YPD4_1709	PF10634	Fe2+ transport protein
YPD4_1710	PF04945	YHS domain
YPD4_1710	PF10080	YPD4_1710
YPD4_1711	PF02687	YPD4_1711
YPD4_1712	PF02687	YPD4_1712
YPD4_1712	PF12704	MacB-like periplasmic core domain
YPD4_1713	PF00005	ABC transporter
YPD4_1714	PF00578	AhpC/TSA family
YPD4_1715	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
YPD4_1716	PF03848	Tellurite resistance protein TehB
YPD4_1716	PF09313	Domain of unknown function (DUF1971)
YPD4_1717	PF00557	Metallopeptidase family M24
YPD4_1717	PF01321	Creatinase/Prolidase N-terminal domain
YPD4_1719	PF01522	Polysaccharide deacetylase
YPD4_1719	PF14883	Hypothetical glycosyl hydrolase family 13
YPD4_1720	PF00535	Glycosyl transferase family 2
YPD4_1721	PF13994	YPD4_1721
YPD4_1722	PF13302	Acetyltransferase (GNAT) domain
YPD4_1723	PF02562	PhoH-like protein
YPD4_1724	PF01699	Sodium/calcium exchanger protein
YPD4_1725	PF00672	HAMP domain
YPD4_1725	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_1725	PF07730	Histidine kinase
YPD4_1725	PF13675	Type IV pili methyl-accepting chemotaxis transducer N-term
YPD4_1726	PF00155	Aminotransferase class I and II
YPD4_1726	PF00392	Bacterial regulatory proteins, gntR family
YPD4_1727	PF00202	Aminotransferase class-III
YPD4_1728	PF04958	Arginine N-succinyltransferase beta subunit
YPD4_1729	PF00171	Aldehyde dehydrogenase family
YPD4_1730	PF04996	Succinylarginine dihydrolase
YPD4_1731	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
YPD4_1732	PF00267	Gram-negative porin
YPD4_1733	PF00665	Integrase core domain
YPD4_1733	PF02796	Helix-turn-helix domain of resolvase
YPD4_1734	PF01695	IstB-like ATP binding protein
YPD4_1735	PF05013	N-formylglutamate amidohydrolase
YPD4_1736	PF01979	Amidohydrolase family
YPD4_1737	PF00392	Bacterial regulatory proteins, gntR family
YPD4_1737	PF07702	UTRA domain
YPD4_1738	PF01979	Amidohydrolase family
YPD4_1739	PF05962	HutD
YPD4_1740	PF00425	chorismate binding enzyme
YPD4_1741	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
YPD4_1742	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
YPD4_1743	PF01370	NAD dependent epimerase/dehydratase family
YPD4_1744	PF00753	Metallo-beta-lactamase superfamily
YPD4_1746	PF01370	NAD dependent epimerase/dehydratase family
YPD4_1747	PF13506	Glycosyl transferase family 21
YPD4_1749	PF04101	Glycosyltransferase family 28 C-terminal domain
YPD4_1752	PF00872	YPD4_1752
YPD4_1753	PF07661	YPD4_1753
YPD4_1753	PF08238	Sel1 repeat
YPD4_1754	PF13226	YPD4_1754
YPD4_1755	PF02502	Ribose/Galactose Isomerase
YPD4_1756	PF08242	Methyltransferase domain
YPD4_1757	PF00106	short chain dehydrogenase
YPD4_1760	PF13646	HEAT repeats
YPD4_1761	PF12697	Alpha/beta hydrolase family
YPD4_1762	PF07883	Cupin domain
YPD4_1763	PF02627	Carboxymuconolactone decarboxylase family
YPD4_1764	PF00512	His Kinase A (phospho-acceptor) domain
YPD4_1764	PF00672	HAMP domain
YPD4_1764	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_1765	PF00072	Response regulator receiver domain
YPD4_1765	PF00486	Transcriptional regulatory protein, C terminal
YPD4_1766	PF01738	Dienelactone hydrolase family
YPD4_1767	PF12682	Flavodoxin
YPD4_1768	PF14358	YPD4_1768
YPD4_1769	PF13316	YPD4_1769
YPD4_1771	PF07859	alpha/beta hydrolase fold
YPD4_1772	PF00581	Rhodanese-like domain
YPD4_1773	PF13683	YPD4_1773
YPD4_1774	PF01926	50S ribosome-binding GTPase
YPD4_1774	PF06071	Protein of unknown function (DUF933)
YPD4_1775	PF01195	Peptidyl-tRNA hydrolase
YPD4_1776	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
YPD4_1776	PF14572	Phosphoribosyl synthetase-associated domain
YPD4_1777	PF00288	GHMP kinases N terminal domain
YPD4_1777	PF08544	GHMP kinases C terminal
YPD4_1778	PF03550	Outer membrane lipoprotein LolB
YPD4_1779	PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain
YPD4_1779	PF01488	Shikimate / quinate 5-dehydrogenase
YPD4_1779	PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
YPD4_1780	PF00472	RF-1 domain
YPD4_1780	PF03462	PCRF domain
YPD4_1781	PF13847	Methyltransferase domain
YPD4_1782	PF04247	YPD4_1782
YPD4_1783	PF13369	YPD4_1783
YPD4_1783	PF13371	Tetratricopeptide repeat
YPD4_1784	PF00793	DAHP synthetase I family
YPD4_1785	PF00916	YPD4_1785
YPD4_1785	PF01740	STAS domain
YPD4_1786	PF00916	YPD4_1786
YPD4_1787	PF03009	Glycerophosphoryl diester phosphodiesterase family
YPD4_1788	PF13416	Bacterial extracellular solute-binding protein
YPD4_1789	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_1790	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_1791	PF00005	ABC transporter
YPD4_1792	PF01797	Transposase IS200 like
YPD4_1793	PF00005	ABC transporter
YPD4_1794	PF03009	Glycerophosphoryl diester phosphodiesterase family
YPD4_1795	PF00480	ROK family
YPD4_1795	PF13412	Winged helix-turn-helix DNA-binding
YPD4_1796	PF02811	PHP domain
YPD4_1797	PF02613	Nitrate reductase delta subunit
YPD4_1798	PF07273	Protein of unknown function (DUF1439)
YPD4_1799	PF07690	Major Facilitator Superfamily
YPD4_1800	PF13302	Acetyltransferase (GNAT) domain
YPD4_1801	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPD4_1801	PF04337	Protein of unknown function, DUF480
YPD4_1802	PF03023	YPD4_1802
YPD4_1803	PF08479	POTRA domain, ShlB-type
YPD4_1804	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YPD4_1804	PF17287	YPD4_1804
YPD4_1805	PF05860	haemagglutination activity domain
YPD4_1805	PF13332	YPD4_1805
YPD4_1806	PF00750	tRNA synthetases class I (R)
YPD4_1806	PF03485	Arginyl tRNA synthetase N terminal domain
YPD4_1806	PF05746	DALR anticodon binding domain
YPD4_1807	PF06185	YecM protein
YPD4_1808	PF03932	CutC family
YPD4_1809	PF08003	Protein of unknown function (DUF1698)
YPD4_1810	PF13649	Methyltransferase domain
YPD4_1811	PF01124	MAPEG family
YPD4_1812	PF01904	Protein of unknown function DUF72
YPD4_1813	PF00152	tRNA synthetases class II (D, K and N)
YPD4_1813	PF01336	OB-fold nucleic acid binding domain
YPD4_1813	PF02938	GAD domain
YPD4_1814	PF00293	NUDIX domain
YPD4_1815	PF01709	Transcriptional regulator
YPD4_1816	PF02075	Crossover junction endodeoxyribonuclease RuvC
YPD4_1817	PF01330	RuvA N terminal domain
YPD4_1817	PF07499	RuvA, C-terminal domain
YPD4_1817	PF14520	Helix-hairpin-helix domain
YPD4_1818	PF05491	Holliday junction DNA helicase ruvB C-terminus
YPD4_1818	PF05496	Holliday junction DNA helicase ruvB N-terminus
YPD4_1819	PF00950	YPD4_1819
YPD4_1820	PF00005	ABC transporter
YPD4_1821	PF01297	Periplasmic solute binding protein family
YPD4_1822	PF01551	Peptidase family M23
YPD4_1822	PF04225	Opacity-associated protein A LysM-like domain
YPD4_1823	PF03279	YPD4_1823
YPD4_1824	PF00224	Pyruvate kinase, barrel domain
YPD4_1824	PF02887	Pyruvate kinase, alpha/beta domain
YPD4_1825	PF01380	SIS domain
YPD4_1825	PF01418	Helix-turn-helix domain, rpiR family
YPD4_1826	PF00479	Glucose-6-phosphate dehydrogenase, NAD binding domain
YPD4_1826	PF02781	Glucose-6-phosphate dehydrogenase, C-terminal domain
YPD4_1827	PF01081	KDPG and KHG aldolase
YPD4_1828	PF00893	Small Multidrug Resistance protein
YPD4_1829	PF00893	Small Multidrug Resistance protein
YPD4_1830	PF01042	Endoribonuclease L-PSP
YPD4_1831	PF06733	DEAD_2
YPD4_1831	PF13307	Helicase C-terminal domain
YPD4_1832	PF00814	Glycoprotease family
YPD4_1833	PF03843	YPD4_1833
YPD4_1834	PF00501	AMP-binding enzyme
YPD4_1834	PF13193	AMP-binding enzyme C-terminal domain
YPD4_1835	PF00570	HRDC domain
YPD4_1835	PF01612	3'-5' exonuclease
YPD4_1836	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
YPD4_1837	PF03775	Septum formation inhibitor MinC, C-terminal domain
YPD4_1837	PF05209	Septum formation inhibitor MinC, N-terminal domain
YPD4_1838	PF13406	Transglycosylase SLT domain
YPD4_1839	PF01557	Fumarylacetoacetate (FAA) hydrolase family
YPD4_1840	PF03692	YPD4_1840
YPD4_1841	PF00589	Phage integrase family
YPD4_1841	PF12167	YPD4_1841
YPD4_1842	PF00665	Integrase core domain
YPD4_1842	PF02796	Helix-turn-helix domain of resolvase
YPD4_1843	PF01695	IstB-like ATP binding protein
YPD4_1844	PF02086	D12 class N6 adenine-specific DNA methyltransferase
YPD4_1845	PF05772	NinB protein
YPD4_1846	PF05766	YPD4_1846
YPD4_1847	PF02498	YPD4_1847
YPD4_1848	PF00959	Phage lysozyme
YPD4_1849	PF03245	YPD4_1849
YPD4_1850	PF03374	YPD4_1850
YPD4_1852	PF10045	YPD4_1852
YPD4_1854	PF00872	YPD4_1854
YPD4_1857	PF13264	YPD4_1857
YPD4_1860	PF02368	Bacterial Ig-like domain (group 2)
YPD4_1864	PF13554	Bacteriophage related domain of unknown function
YPD4_1865	PF02368	Bacterial Ig-like domain (group 2)
YPD4_1865	PF08813	YPD4_1865
YPD4_1866	PF08748	YPD4_1866
YPD4_1867	PF06791	YPD4_1867
YPD4_1867	PF09718	YPD4_1867
YPD4_1868	PF05939	YPD4_1868
YPD4_1869	PF01797	Transposase IS200 like
YPD4_1870	PF05100	YPD4_1870
YPD4_1871	PF00877	NlpC/P60 family
YPD4_1871	PF14464	Prokaryotic homologs of the JAB domain
YPD4_1873	PF02498	YPD4_1873
YPD4_1874	PF09327	YPD4_1874
YPD4_1874	PF13550	YPD4_1874
YPD4_1877	PF02413	YPD4_1877
YPD4_1878	PF00872	YPD4_1878
YPD4_1879	PF07690	Major Facilitator Superfamily
YPD4_1880	PF00266	Aminotransferase class-V
YPD4_1883	PF02600	Disulfide bond formation protein DsbB
YPD4_1884	PF06450	YPD4_1884
YPD4_1885	PF00392	Bacterial regulatory proteins, gntR family
YPD4_1885	PF07840	FadR C-terminal domain
YPD4_1886	PF04293	YPD4_1886
YPD4_1887	PF01266	FAD dependent oxidoreductase
YPD4_1888	PF07690	Major Facilitator Superfamily
YPD4_1889	PF02678	Pirin
YPD4_1889	PF05726	Pirin C-terminal cupin domain
YPD4_1890	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_1890	PF03466	LysR substrate binding domain
YPD4_1891	PF00892	EamA-like transporter family
YPD4_1892	PF04285	YPD4_1892
YPD4_1893	PF06798	YPD4_1893
YPD4_1893	PF08298	PrkA AAA domain
YPD4_1894	PF06629	YPD4_1894
YPD4_1895	PF01263	Aldose 1-epimerase
YPD4_1896	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
YPD4_1896	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
YPD4_1897	PF01641	SelR domain
YPD4_1899	PF00857	Isochorismatase family
YPD4_1900	PF00710	Asparaginase
YPD4_1901	PF01343	Peptidase family S49
YPD4_1902	PF00881	Nitroreductase family
YPD4_1903	PF00586	AIR synthase related protein, N-terminal domain
YPD4_1903	PF02769	AIR synthase related protein, C-terminal domain
YPD4_1904	PF01131	DNA topoisomerase
YPD4_1904	PF01751	Toprim domain
YPD4_1905	PF00293	NUDIX domain
YPD4_1906	PF03372	Endonuclease/Exonuclease/phosphatase family
YPD4_1907	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_1908	PF00872	YPD4_1908
YPD4_1909	PF00551	Formyl transferase
YPD4_1909	PF01842	ACT domain
YPD4_1910	PF02810	SEC-C motif
YPD4_1911	PF00072	Response regulator receiver domain
YPD4_1912	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
YPD4_1912	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
YPD4_1912	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
YPD4_1913	PF00816	H-NS histone family
YPD4_1914	PF00265	Thymidine kinase
YPD4_1915	PF01695	IstB-like ATP binding protein
YPD4_1916	PF00665	Integrase core domain
YPD4_1916	PF02796	Helix-turn-helix domain of resolvase
YPD4_1917	PF00465	Iron-containing alcohol dehydrogenase
YPD4_1918	PF00171	Aldehyde dehydrogenase family
YPD4_1919	PF01914	YPD4_1919
YPD4_1920	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPD4_1921	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_1922	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_1922	PF12911	YPD4_1922
YPD4_1923	PF00005	ABC transporter
YPD4_1923	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YPD4_1924	PF00005	ABC transporter
YPD4_1924	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YPD4_1925	PF04269	Protein of unknown function, DUF440
YPD4_1926	PF13091	PLD-like domain
YPD4_1926	PF13396	YPD4_1926
YPD4_1927	PF13505	Outer membrane protein beta-barrel domain
YPD4_1928	PF03544	Gram-negative bacterial TonB protein C-terminal
YPD4_1928	PF16031	YPD4_1928
YPD4_1929	PF00872	YPD4_1929
YPD4_1930	PF03061	Thioesterase superfamily
YPD4_1931	PF04279	YPD4_1931
YPD4_1932	PF00916	YPD4_1932
YPD4_1933	PF01740	STAS domain
YPD4_1934	PF06790	YPD4_1934
YPD4_1935	PF03922	OmpW family
YPD4_1936	PF04972	BON domain
YPD4_1937	PF00290	Tryptophan synthase alpha chain
YPD4_1938	PF00291	Pyridoxal-phosphate dependent enzyme
YPD4_1939	PF00218	Indole-3-glycerol phosphate synthase
YPD4_1939	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
YPD4_1940	PF00591	Glycosyl transferase family, a/b domain
YPD4_1940	PF02885	Glycosyl transferase family, helical bundle domain
YPD4_1941	PF00117	Glutamine amidotransferase class-I
YPD4_1942	PF00425	chorismate binding enzyme
YPD4_1942	PF04715	Anthranilate synthase component I, N terminal region
YPD4_1943	PF02811	PHP domain
YPD4_1944	PF01300	Telomere recombination
YPD4_1945	PF00849	RNA pseudouridylate synthase
YPD4_1945	PF01479	S4 domain
YPD4_1946	PF02572	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
YPD4_1946	PF12557	Cob(I)alamin adenosyltransferase N terminal
YPD4_1947	PF00106	short chain dehydrogenase
YPD4_1948	PF01343	Peptidase family S49
YPD4_1948	PF08496	YPD4_1948
YPD4_1949	PF01131	DNA topoisomerase
YPD4_1949	PF01396	YPD4_1949
YPD4_1949	PF01751	Toprim domain
YPD4_1949	PF08272	Topoisomerase I zinc-ribbon-like
YPD4_1950	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_1950	PF03466	LysR substrate binding domain
YPD4_1952	PF00330	Aconitase family (aconitate hydratase)
YPD4_1952	PF00694	Aconitase C-terminal domain
YPD4_1953	PF00925	GTP cyclohydrolase II
YPD4_1954	PF01569	PAP2 superfamily
YPD4_1955	PF06305	YPD4_1955
YPD4_1956	PF13176	Tetratricopeptide repeat
YPD4_1956	PF13432	Tetratricopeptide repeat
YPD4_1957	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
YPD4_1958	PF01253	Translation initiation factor SUI1
YPD4_1959	PF00596	Class II Aldolase and Adducin N-terminal domain
YPD4_1960	PF00923	Transaldolase
YPD4_1961	PF04328	YPD4_1961
YPD4_1962	PF02554	YPD4_1962
YPD4_1962	PF13722	YPD4_1962
YPD4_1963	PF00575	S1 RNA binding domain
YPD4_1963	PF00773	RNB domain
YPD4_1963	PF08206	Ribonuclease B OB domain
YPD4_1964	PF07690	Major Facilitator Superfamily
YPD4_1965	PF01370	NAD dependent epimerase/dehydratase family
YPD4_1966	PF00633	Helix-hairpin-helix motif
YPD4_1966	PF00730	HhH-GPD superfamily base excision DNA repair protein
YPD4_1966	PF10576	Iron-sulfur binding domain of endonuclease III
YPD4_1967	PF02508	YPD4_1967
YPD4_1968	PF04205	FMN-binding domain
YPD4_1969	PF03116	YPD4_1969
YPD4_1970	PF06445	GyrI-like small molecule binding domain
YPD4_1970	PF12833	Helix-turn-helix domain
YPD4_1971	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
YPD4_1971	PF10531	SLBB domain
YPD4_1971	PF13237	4Fe-4S dicluster domain
YPD4_1971	PF13375	RnfC Barrel sandwich hybrid domain
YPD4_1972	PF04060	Putative Fe-S cluster
YPD4_1972	PF14697	4Fe-4S dicluster domain
YPD4_1973	PF02508	YPD4_1973
YPD4_1974	PF10754	YPD4_1974
YPD4_1975	PF00005	ABC transporter
YPD4_1975	PF00664	ABC transporter transmembrane region
YPD4_1976	PF13533	Biotin-lipoyl like
YPD4_1977	PF00529	HlyD family secretion protein
YPD4_1978	PF00005	ABC transporter
YPD4_1978	PF00664	ABC transporter transmembrane region
YPD4_1978	PF03412	Peptidase C39 family
YPD4_1979	PF02610	L-arabinose isomerase
YPD4_1979	PF11762	L-arabinose isomerase C-terminal domain
YPD4_1980	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPD4_1980	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPD4_1981	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YPD4_1982	PF00005	ABC transporter
YPD4_1983	PF02653	YPD4_1983
YPD4_1984	PF02311	AraC-like ligand binding domain
YPD4_1984	PF12833	Helix-turn-helix domain
YPD4_1985	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPD4_1985	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
YPD4_1986	PF13593	SBF-like CPA transporter family (DUF4137)
YPD4_1988	PF06097	YPD4_1988
YPD4_1989	PF01238	Phosphomannose isomerase type I
YPD4_1990	PF00206	Lyase
YPD4_1990	PF10415	Fumarase C C-terminus
YPD4_1991	PF05472	DNA replication terminus site-binding protein (Ter protein)
YPD4_1992	PF07690	Major Facilitator Superfamily
YPD4_1993	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_1993	PF03466	LysR substrate binding domain
YPD4_1994	PF00480	ROK family
YPD4_1995	PF13500	AAA domain
YPD4_1996	PF00654	Voltage gated chloride channel
YPD4_1997	PF00356	Bacterial regulatory proteins, lacI family
YPD4_1997	PF13377	Periplasmic binding protein-like domain
YPD4_1999	PF13407	Periplasmic binding protein domain
YPD4_2000	PF13379	NMT1-like family
YPD4_2001	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_2002	PF01048	Phosphorylase superfamily
YPD4_2002	PF10423	Bacterial AMP nucleoside phosphorylase N-terminus
YPD4_2004	PF07520	YPD4_2004
YPD4_2005	PF10139	YPD4_2005
YPD4_2006	PF07313	Protein of unknown function (DUF1460)
YPD4_2007	PF00205	Thiamine pyrophosphate enzyme, central domain
YPD4_2007	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPD4_2007	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YPD4_2008	PF13710	ACT domain
YPD4_2009	PF13419	Haloacid dehalogenase-like hydrolase
YPD4_2010	PF15615	YPD4_2010
YPD4_2011	PF13208	YPD4_2011
YPD4_2012	PF00245	Alkaline phosphatase
YPD4_2013	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
YPD4_2013	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
YPD4_2014	PF00027	Cyclic nucleotide-binding domain
YPD4_2014	PF13545	Crp-like helix-turn-helix domain
YPD4_2015	PF00582	Universal stress protein family
YPD4_2016	PF02233	NAD(P) transhydrogenase beta subunit
YPD4_2017	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
YPD4_2017	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
YPD4_2017	PF12769	Domain of unknown function (DUF3814)
YPD4_2018	PF07338	Protein of unknown function (DUF1471)
YPD4_2019	PF13520	Amino acid permease
YPD4_2021	PF00072	Response regulator receiver domain
YPD4_2021	PF00486	Transcriptional regulatory protein, C terminal
YPD4_2022	PF00512	His Kinase A (phospho-acceptor) domain
YPD4_2022	PF00672	HAMP domain
YPD4_2022	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_2023	PF02074	Carboxypeptidase Taq (M32) metallopeptidase
YPD4_2024	PF01797	Transposase IS200 like
YPD4_2025	PF03497	Anthrax toxin LF subunit
YPD4_2027	PF04264	YceI-like domain
YPD4_2028	PF01292	Prokaryotic cytochrome b561
YPD4_2029	PF00089	Trypsin
YPD4_2030	PF01381	Helix-turn-helix
YPD4_2031	PF05973	YPD4_2031
YPD4_2032	PF00270	DEAD/DEAH box helicase
YPD4_2032	PF00271	Helicase conserved C-terminal domain
YPD4_2032	PF04408	Helicase associated domain (HA2)
YPD4_2032	PF07717	Oligonucleotide/oligosaccharide-binding (OB)-fold
YPD4_2032	PF11898	YPD4_2032
YPD4_2033	PF02525	Flavodoxin-like fold
YPD4_2034	PF04198	Putative sugar-binding domain
YPD4_2035	PF01232	Mannitol dehydrogenase Rossmann domain
YPD4_2035	PF08125	Mannitol dehydrogenase C-terminal domain
YPD4_2036	PF07027	YPD4_2036
YPD4_2037	PF11739	YPD4_2037
YPD4_2038	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YPD4_2038	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YPD4_2039	PF03724	META domain
YPD4_2040	PF03891	YPD4_2040
YPD4_2041	PF02308	YPD4_2041
YPD4_2042	PF00893	Small Multidrug Resistance protein
YPD4_2043	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
YPD4_2043	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
YPD4_2043	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPD4_2043	PF10371	Domain of unknown function
YPD4_2043	PF12838	4Fe-4S dicluster domain
YPD4_2043	PF17147	YPD4_2043
YPD4_2044	PF01171	PP-loop family
YPD4_2045	PF07859	alpha/beta hydrolase fold
YPD4_2046	PF13411	MerR HTH family regulatory protein
YPD4_2047	PF01544	CorA-like Mg2+ transporter protein
YPD4_2048	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPD4_2049	PF00246	Zinc carboxypeptidase
YPD4_2050	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
YPD4_2050	PF13378	Enolase C-terminal domain-like
YPD4_2051	PF00665	Integrase core domain
YPD4_2051	PF02796	Helix-turn-helix domain of resolvase
YPD4_2052	PF01695	IstB-like ATP binding protein
YPD4_2053	PF01734	Patatin-like phospholipase
YPD4_2054	PF00842	Alanine racemase, C-terminal domain
YPD4_2054	PF01168	Alanine racemase, N-terminal domain
YPD4_2056	PF03895	YadA-like C-terminal region
YPD4_2056	PF05662	Coiled stalk of trimeric autotransporter adhesin
YPD4_2057	PF05658	Head domain of trimeric autotransporter adhesin
YPD4_2057	PF05662	Coiled stalk of trimeric autotransporter adhesin
YPD4_2058	PF01510	N-acetylmuramoyl-L-alanine amidase
YPD4_2059	PF04344	Chemotaxis phosphatase, CheZ
YPD4_2060	PF00072	Response regulator receiver domain
YPD4_2061	PF00072	Response regulator receiver domain
YPD4_2061	PF01339	CheB methylesterase
YPD4_2062	PF01739	CheR methyltransferase, SAM binding domain
YPD4_2062	PF03705	CheR methyltransferase, all-alpha domain
YPD4_2063	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPD4_2063	PF00672	HAMP domain
YPD4_2063	PF02203	Tar ligand binding domain homologue
YPD4_2064	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPD4_2064	PF00672	HAMP domain
YPD4_2064	PF02203	Tar ligand binding domain homologue
YPD4_2066	PF10101	YPD4_2066
YPD4_2067	PF03797	Autotransporter beta-domain
YPD4_2068	PF08348	YPD4_2068
YPD4_2068	PF13309	YPD4_2068
YPD4_2069	PF01261	Xylose isomerase-like TIM barrel
YPD4_2070	PF01042	Endoribonuclease L-PSP
YPD4_2071	PF07690	Major Facilitator Superfamily
YPD4_2072	PF01584	CheW-like domain
YPD4_2073	PF01584	CheW-like domain
YPD4_2073	PF01627	Hpt domain
YPD4_2073	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_2073	PF02895	Signal transducing histidine kinase, homodimeric domain
YPD4_2073	PF09078	CheY binding
YPD4_2075	PF00691	OmpA family
YPD4_2075	PF13677	YPD4_2075
YPD4_2076	PF01618	YPD4_2076
YPD4_2077	PF05280	Flagellar transcriptional activator (FlhC)
YPD4_2078	PF00122	E1-E2 ATPase
YPD4_2078	PF00689	Cation transporting ATPase, C-terminus
YPD4_2078	PF00690	Cation transporter/ATPase, N-terminus
YPD4_2078	PF00702	haloacid dehalogenase-like hydrolase
YPD4_2079	PF02308	YPD4_2079
YPD4_2080	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPD4_2080	PF02203	Tar ligand binding domain homologue
YPD4_2081	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPD4_2082	PF00703	Glycosyl hydrolases family 2
YPD4_2082	PF02836	Glycosyl hydrolases family 2, TIM barrel domain
YPD4_2082	PF02837	Glycosyl hydrolases family 2, sugar binding domain
YPD4_2082	PF02929	Beta galactosidase small chain
YPD4_2082	PF16353	YPD4_2082
YPD4_2083	PF00107	Zinc-binding dehydrogenase
YPD4_2083	PF08240	Alcohol dehydrogenase GroES-like domain
YPD4_2084	PF10777	YPD4_2084
YPD4_2085	PF01037	AsnC family
YPD4_2085	PF13412	Winged helix-turn-helix DNA-binding
YPD4_2086	PF11004	YPD4_2086
YPD4_2087	PF00328	Histidine phosphatase superfamily (branch 2)
YPD4_2088	PF01638	HxlR-like helix-turn-helix
YPD4_2089	PF05368	NmrA-like family
YPD4_2090	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPD4_2090	PF08447	PAS fold
YPD4_2091	PF00356	Bacterial regulatory proteins, lacI family
YPD4_2091	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YPD4_2092	PF00180	Isocitrate/isopropylmalate dehydrogenase
YPD4_2093	PF00849	RNA pseudouridylate synthase
YPD4_2094	PF00293	NUDIX domain
YPD4_2095	PF03054	tRNA methyl transferase
YPD4_2096	PF04356	Protein of unknown function (DUF489)
YPD4_2097	PF00206	Lyase
YPD4_2097	PF08328	Adenylosuccinate lyase C-terminal
YPD4_2098	PF13505	Outer membrane protein beta-barrel domain
YPD4_2099	PF00072	Response regulator receiver domain
YPD4_2099	PF00486	Transcriptional regulatory protein, C terminal
YPD4_2100	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_2100	PF08918	PhoQ Sensor
YPD4_2101	PF08007	Cupin superfamily protein
YPD4_2102	PF01546	Peptidase family M20/M25/M40
YPD4_2102	PF07687	Peptidase dimerisation domain
YPD4_2103	PF02146	Sir2 family
YPD4_2104	PF00480	ROK family
YPD4_2105	PF02687	YPD4_2105
YPD4_2105	PF12704	MacB-like periplasmic core domain
YPD4_2106	PF00005	ABC transporter
YPD4_2107	PF02687	YPD4_2107
YPD4_2107	PF12704	MacB-like periplasmic core domain
YPD4_2108	PF00270	DEAD/DEAH box helicase
YPD4_2108	PF00271	Helicase conserved C-terminal domain
YPD4_2108	PF02559	CarD-like/TRCF domain
YPD4_2108	PF03461	TRCF domain
YPD4_2109	PF05433	YPD4_2109
YPD4_2110	PF00872	YPD4_2110
YPD4_2113	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPD4_2114	PF05728	Uncharacterised protein family (UPF0227)
YPD4_2115	PF00933	Glycosyl hydrolase family 3 N terminal domain
YPD4_2116	PF01636	Phosphotransferase enzyme family
YPD4_2117	PF13036	Protein of unknown function (DUF3897)
YPD4_2118	PF07233	Protein of unknown function (DUF1425)
YPD4_2119	PF01230	HIT domain
YPD4_2120	PF08501	Shikimate dehydrogenase substrate binding domain
YPD4_2121	PF01797	Transposase IS200 like
YPD4_2122	PF00367	phosphotransferase system, EIIB
YPD4_2122	PF02378	Phosphotransferase system, EIIC
YPD4_2123	PF01026	TatD related DNase
YPD4_2124	PF09115	DNA polymerase III, delta subunit, C terminal
YPD4_2124	PF13177	DNA polymerase III, delta subunit
YPD4_2125	PF02223	Thymidylate kinase
YPD4_2126	PF02618	YceG-like family
YPD4_2127	PF01063	Aminotransferase class IV
YPD4_2128	PF01797	Transposase IS200 like
YPD4_2129	PF00109	Beta-ketoacyl synthase, N-terminal domain
YPD4_2129	PF02801	Beta-ketoacyl synthase, C-terminal domain
YPD4_2130	PF13561	Enoyl-(Acyl carrier protein) reductase
YPD4_2131	PF00698	Acyl transferase domain
YPD4_2132	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
YPD4_2132	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
YPD4_2133	PF02504	Fatty acid synthesis protein
YPD4_2134	PF02620	YPD4_2134
YPD4_2135	PF02545	Maf-like protein
YPD4_2136	PF01797	Transposase IS200 like
YPD4_2137	PF00849	RNA pseudouridylate synthase
YPD4_2137	PF01479	S4 domain
YPD4_2138	PF00575	S1 RNA binding domain
YPD4_2138	PF10150	Ribonuclease E/G family
YPD4_2138	PF12111	Polyribonucleotide phosphorylase C terminal
YPD4_2139	PF00872	YPD4_2139
YPD4_2140	PF01979	Amidohydrolase family
YPD4_2141	PF00872	YPD4_2141
YPD4_2142	PF01266	FAD dependent oxidoreductase
YPD4_2143	PF00196	Bacterial regulatory proteins, luxR family
YPD4_2144	PF01594	YPD4_2144
YPD4_2145	PF00581	Rhodanese-like domain
YPD4_2145	PF12368	YPD4_2145
YPD4_2146	PF00892	EamA-like transporter family
YPD4_2147	PF00765	Autoinducer synthetase
YPD4_2148	PF00196	Bacterial regulatory proteins, luxR family
YPD4_2148	PF03472	Autoinducer binding domain
YPD4_2149	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_2149	PF03466	LysR substrate binding domain
YPD4_2150	PF00083	Sugar (and other) transporter
YPD4_2151	PF08714	Formaldehyde-activating enzyme (Fae)
YPD4_2152	PF00248	Aldo/keto reductase family
YPD4_2153	PF09618	CRISPR-associated protein (Cas_Csy4)
YPD4_2154	PF09615	YPD4_2154
YPD4_2155	PF09614	YPD4_2155
YPD4_2156	PF09611	YPD4_2156
YPD4_2158	PF01867	CRISPR associated protein Cas1
YPD4_2159	PF00924	Mechanosensitive ion channel
YPD4_2162	PF08950	Protein of unknown function (DUF1861)
YPD4_2163	PF04041	Domain of unknown function (DUF377)
YPD4_2164	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_2165	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_2166	PF13416	Bacterial extracellular solute-binding protein
YPD4_2167	PF00356	Bacterial regulatory proteins, lacI family
YPD4_2167	PF13377	Periplasmic binding protein-like domain
YPD4_2168	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
YPD4_2168	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YPD4_2168	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
YPD4_2168	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
YPD4_2169	PF00005	ABC transporter
YPD4_2169	PF08402	TOBE domain
YPD4_2173	PF04829	YPD4_2173
YPD4_2175	PF10004	YPD4_2175
YPD4_2176	PF04829	YPD4_2176
YPD4_2176	PF05594	YPD4_2176
YPD4_2176	PF05860	haemagglutination activity domain
YPD4_2176	PF13018	YPD4_2176
YPD4_2176	PF13332	YPD4_2176
YPD4_2177	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YPD4_2177	PF08479	POTRA domain, ShlB-type
YPD4_2177	PF17287	YPD4_2177
YPD4_2178	PF00111	2Fe-2S iron-sulfur cluster binding domain
YPD4_2178	PF00175	Oxidoreductase NAD-binding domain
YPD4_2178	PF00970	Oxidoreductase FAD-binding domain
YPD4_2179	PF00355	Rieske [2Fe-2S] domain
YPD4_2179	PF00848	Ring hydroxylating alpha subunit (catalytic domain)
YPD4_2180	PF02028	BCCT family transporter
YPD4_2181	PF00180	Isocitrate/isopropylmalate dehydrogenase
YPD4_2182	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_2182	PF03466	LysR substrate binding domain
YPD4_2183	PF00356	Bacterial regulatory proteins, lacI family
YPD4_2183	PF13407	Periplasmic binding protein domain
YPD4_2184	PF02653	YPD4_2184
YPD4_2185	PF00005	ABC transporter
YPD4_2186	PF13407	Periplasmic binding protein domain
YPD4_2187	PF00107	Zinc-binding dehydrogenase
YPD4_2187	PF08240	Alcohol dehydrogenase GroES-like domain
YPD4_2188	PF16809	YPD4_2188
YPD4_2189	PF16809	YPD4_2189
YPD4_2190	PF01545	Cation efflux family
YPD4_2191	PF13505	Outer membrane protein beta-barrel domain
YPD4_2192	PF00892	EamA-like transporter family
YPD4_2193	PF00583	Acetyltransferase (GNAT) family
YPD4_2194	PF13649	Methyltransferase domain
YPD4_2195	PF00210	Ferritin-like domain
YPD4_2196	PF02698	DUF218 domain
YPD4_2197	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPD4_2198	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_2199	PF00005	ABC transporter
YPD4_2200	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPD4_2200	PF08448	PAS fold
YPD4_2200	PF13426	PAS domain
YPD4_2201	PF00665	Integrase core domain
YPD4_2201	PF02796	Helix-turn-helix domain of resolvase
YPD4_2202	PF01695	IstB-like ATP binding protein
YPD4_2205	PF00782	Dual specificity phosphatase, catalytic domain
YPD4_2205	PF14378	YPD4_2205
YPD4_2206	PF12146	Putative lysophospholipase
YPD4_2206	PF12147	YPD4_2206
YPD4_2207	PF01553	Acyltransferase
YPD4_2208	PF01148	Cytidylyltransferase family
YPD4_2209	PF01066	CDP-alcohol phosphatidyltransferase
YPD4_2211	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
YPD4_2211	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
YPD4_2212	PF01797	Transposase IS200 like
YPD4_2213	PF14681	Uracil phosphoribosyltransferase
YPD4_2214	PF00586	AIR synthase related protein, N-terminal domain
YPD4_2214	PF02769	AIR synthase related protein, C-terminal domain
YPD4_2215	PF00551	Formyl transferase
YPD4_2216	PF13302	Acetyltransferase (GNAT) domain
YPD4_2218	PF03692	YPD4_2218
YPD4_2219	PF00005	ABC transporter
YPD4_2220	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_2221	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_2222	PF02503	Polyphosphate kinase middle domain
YPD4_2222	PF13089	Polyphosphate kinase N-terminal domain
YPD4_2222	PF13090	Polyphosphate kinase C-terminal domain
YPD4_2223	PF02541	Ppx/GppA phosphatase family
YPD4_2224	PF00571	CBS domain
YPD4_2224	PF01769	Divalent cation transporter
YPD4_2224	PF03448	MgtE intracellular N domain
YPD4_2225	PF00012	Hsp70 protein
YPD4_2226	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_2228	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_2229	PF13416	Bacterial extracellular solute-binding protein
YPD4_2230	PF00202	Aminotransferase class-III
YPD4_2231	PF00155	Aminotransferase class I and II
YPD4_2231	PF00392	Bacterial regulatory proteins, gntR family
YPD4_2232	PF00005	ABC transporter
YPD4_2232	PF08402	TOBE domain
YPD4_2233	PF13437	HlyD family secretion protein
YPD4_2233	PF13533	Biotin-lipoyl like
YPD4_2234	PF00873	AcrB/AcrD/AcrF family
YPD4_2235	PF00873	AcrB/AcrD/AcrF family
YPD4_2236	PF07690	Major Facilitator Superfamily
YPD4_2237	PF00512	His Kinase A (phospho-acceptor) domain
YPD4_2237	PF00672	HAMP domain
YPD4_2238	PF00072	Response regulator receiver domain
YPD4_2238	PF00486	Transcriptional regulatory protein, C terminal
YPD4_2239	PF07411	Domain of unknown function (DUF1508)
YPD4_2240	PF01136	YPD4_2240
YPD4_2240	PF16325	YPD4_2240
YPD4_2241	PF00781	Diacylglycerol kinase catalytic domain
YPD4_2242	PF08816	Inhibitor of vertebrate lysozyme (Ivy)
YPD4_2244	PF08543	Phosphomethylpyrimidine kinase
YPD4_2245	PF06092	YPD4_2245
YPD4_2246	PF00872	YPD4_2246
YPD4_2248	PF06836	YPD4_2248
YPD4_2249	PF06836	YPD4_2249
YPD4_2250	PF05638	Protein of unknown function (DUF796)
YPD4_2251	PF01797	Transposase IS200 like
YPD4_2252	PF00117	Glutamine amidotransferase class-I
YPD4_2252	PF00958	GMP synthase C terminal domain
YPD4_2252	PF02540	NAD synthase
YPD4_2253	PF00478	IMP dehydrogenase / GMP reductase domain
YPD4_2253	PF00571	CBS domain
YPD4_2254	PF02601	YPD4_2254
YPD4_2254	PF13742	YPD4_2254
YPD4_2255	PF03547	YPD4_2255
YPD4_2256	PF01926	50S ribosome-binding GTPase
YPD4_2256	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
YPD4_2257	PF13360	PQQ-like domain
YPD4_2258	PF09976	Tetratricopeptide repeat
YPD4_2259	PF03129	Anticodon binding domain
YPD4_2259	PF13393	Histidyl-tRNA synthetase
YPD4_2260	PF04551	GcpE protein
YPD4_2261	PF13413	Helix-turn-helix domain
YPD4_2261	PF13464	YPD4_2261
YPD4_2263	PF04055	Radical SAM superfamily
YPD4_2264	PF00334	Nucleoside diphosphate kinase
YPD4_2265	PF00030	Beta/Gamma crystallin
YPD4_2265	PF08964	Beta/Gamma crystallin
YPD4_2265	PF09101	Exotoxin A binding
YPD4_2266	PF03212	Pertactin
YPD4_2266	PF03797	Autotransporter beta-domain
YPD4_2267	PF03212	Pertactin
YPD4_2267	PF03797	Autotransporter beta-domain
YPD4_2268	PF03797	Autotransporter beta-domain
YPD4_2269	PF07179	YPD4_2269
YPD4_2269	PF14581	YPD4_2269
YPD4_2270	PF00883	Cytosol aminopeptidase family, catalytic domain
YPD4_2270	PF12404	YPD4_2270
YPD4_2271	PF00111	2Fe-2S iron-sulfur cluster binding domain
YPD4_2272	PF00012	Hsp70 protein
YPD4_2273	PF00226	DnaJ domain
YPD4_2273	PF07743	HSCB C-terminal oligomerisation domain
YPD4_2274	PF01521	Iron-sulphur cluster biosynthesis
YPD4_2275	PF01592	NifU-like N terminal domain
YPD4_2276	PF00266	Aminotransferase class-V
YPD4_2277	PF00266	Aminotransferase class-V
YPD4_2278	PF02082	Transcriptional regulator
YPD4_2279	PF00588	SpoU rRNA Methylase family
YPD4_2280	PF00459	Inositol monophosphatase family
YPD4_2281	PF01797	Transposase IS200 like
YPD4_2282	PF03824	YPD4_2282
YPD4_2283	PF06226	YPD4_2283
YPD4_2284	PF00874	PRD domain
YPD4_2285	PF12832	MFS_1 like family
YPD4_2286	PF12832	MFS_1 like family
YPD4_2287	PF13505	Outer membrane protein beta-barrel domain
YPD4_2288	PF00464	Serine hydroxymethyltransferase
YPD4_2289	PF00042	Globin
YPD4_2289	PF00175	Oxidoreductase NAD-binding domain
YPD4_2289	PF00970	Oxidoreductase FAD-binding domain
YPD4_2290	PF14502	Helix-turn-helix domain
YPD4_2290	PF14503	YhfZ C-terminal domain
YPD4_2291	PF14503	YhfZ C-terminal domain
YPD4_2292	PF00543	Nitrogen regulatory protein P-II
YPD4_2293	PF00795	Carbon-nitrogen hydrolase
YPD4_2293	PF02540	NAD synthase
YPD4_2294	PF00072	Response regulator receiver domain
YPD4_2294	PF00158	Sigma-54 interaction domain
YPD4_2295	PF13942	YPD4_2295
YPD4_2296	PF00512	His Kinase A (phospho-acceptor) domain
YPD4_2296	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_2297	PF01797	Transposase IS200 like
YPD4_2300	PF02769	AIR synthase related protein, C-terminal domain
YPD4_2300	PF13507	CobB/CobQ-like glutamine amidotransferase domain
YPD4_2301	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPD4_2301	PF01464	Transglycosylase SLT domain
YPD4_2302	PF14437	YPD4_2302
YPD4_2303	PF12710	haloacid dehalogenase-like hydrolase
YPD4_2304	PF01380	SIS domain
YPD4_2305	PF01380	SIS domain
YPD4_2305	PF01418	Helix-turn-helix domain, rpiR family
YPD4_2306	PF01797	Transposase IS200 like
YPD4_2307	PF01648	4'-phosphopantetheinyl transferase superfamily
YPD4_2308	PF03740	Pyridoxal phosphate biosynthesis protein PdxJ
YPD4_2309	PF01695	IstB-like ATP binding protein
YPD4_2310	PF00665	Integrase core domain
YPD4_2310	PF02796	Helix-turn-helix domain of resolvase
YPD4_2311	PF02565	Recombination protein O C terminal
YPD4_2311	PF11967	Recombination protein O N terminal
YPD4_2312	PF01926	50S ribosome-binding GTPase
YPD4_2312	PF07650	KH domain
YPD4_2313	PF00035	Double-stranded RNA binding motif
YPD4_2313	PF14622	Ribonuclease-III-like
YPD4_2314	PF00717	Peptidase S24-like
YPD4_2314	PF10502	Signal peptidase, peptidase S26
YPD4_2315	PF00009	Elongation factor Tu GTP binding domain
YPD4_2315	PF00679	Elongation factor G C-terminus
YPD4_2315	PF03144	Elongation factor Tu domain 2
YPD4_2315	PF06421	GTP-binding protein LepA C-terminus
YPD4_2317	PF04246	YPD4_2317
YPD4_2318	PF03888	MucB/RseB family
YPD4_2318	PF17188	YPD4_2318
YPD4_2319	PF03872	Anti sigma-E protein RseA, N-terminal domain
YPD4_2319	PF03873	Anti sigma-E protein RseA, C-terminal domain
YPD4_2320	PF04542	Sigma-70 region 2
YPD4_2320	PF08281	Sigma-70, region 4
YPD4_2321	PF00890	FAD binding domain
YPD4_2321	PF02910	Fumarate reductase flavoprotein C-term
YPD4_2322	PF05175	Methyltransferase small domain
YPD4_2323	PF00270	DEAD/DEAH box helicase
YPD4_2323	PF00271	Helicase conserved C-terminal domain
YPD4_2325	PF11187	Protein of unknown function (DUF2974)
YPD4_2326	PF01228	Glycine radical
YPD4_2327	PF03167	Uracil DNA glycosylase superfamily
YPD4_2328	PF01470	Pyroglutamyl peptidase
YPD4_2329	PF06166	YPD4_2329
YPD4_2330	PF06149	YPD4_2330
YPD4_2331	PF03746	LamB/YcsF family
YPD4_2332	PF02626	Allophanate hydrolase subunit 2
YPD4_2333	PF02682	Allophanate hydrolase subunit 1
YPD4_2334	PF01784	NIF3 (NGG1p interacting factor 3)
YPD4_2335	PF02112	YPD4_2335
YPD4_2336	PF00875	DNA photolyase
YPD4_2336	PF03441	FAD binding domain of DNA photolyase
YPD4_2337	PF08349	YPD4_2337
YPD4_2338	PF03814	YPD4_2338
YPD4_2339	PF00122	E1-E2 ATPase
YPD4_2339	PF00702	haloacid dehalogenase-like hydrolase
YPD4_2340	PF02669	YPD4_2340
YPD4_2341	PF00512	His Kinase A (phospho-acceptor) domain
YPD4_2341	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_2341	PF02702	Osmosensitive K+ channel His kinase sensor domain
YPD4_2341	PF13492	GAF domain
YPD4_2341	PF13493	Domain of unknown function (DUF4118)
YPD4_2342	PF00072	Response regulator receiver domain
YPD4_2342	PF00486	Transcriptional regulatory protein, C terminal
YPD4_2343	PF00892	EamA-like transporter family
YPD4_2344	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
YPD4_2344	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YPD4_2344	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
YPD4_2344	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
YPD4_2345	PF03925	SeqA protein
YPD4_2345	PF17206	YPD4_2345
YPD4_2346	PF04794	YdjC-like protein
YPD4_2347	PF07883	Cupin domain
YPD4_2347	PF12833	Helix-turn-helix domain
YPD4_2348	PF02255	PTS system, Lactose/Cellobiose specific IIA subunit
YPD4_2349	PF02378	Phosphotransferase system, EIIC
YPD4_2350	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
YPD4_2351	PF02537	YPD4_2351
YPD4_2352	PF02537	YPD4_2352
YPD4_2353	PF02254	TrkA-N domain
YPD4_2353	PF07885	Ion channel
YPD4_2354	PF06411	HdeA/HdeB family
YPD4_2355	PF03824	YPD4_2355
YPD4_2356	PF03253	Urea transporter
YPD4_2357	PF01774	UreD urease accessory protein
YPD4_2358	PF02492	CobW/HypB/UreG, nucleotide-binding domain
YPD4_2359	PF01730	UreF
YPD4_2360	PF02814	UreE urease accessory protein, N-terminal domain
YPD4_2360	PF05194	UreE urease accessory protein, C-terminal domain
YPD4_2361	PF00449	Urease alpha-subunit, N-terminal domain
YPD4_2361	PF01979	Amidohydrolase family
YPD4_2362	PF00699	Urease beta subunit
YPD4_2363	PF00547	Urease, gamma subunit
YPD4_2364	PF00005	ABC transporter
YPD4_2365	PF00005	ABC transporter
YPD4_2366	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_2367	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_2368	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPD4_2369	PF04899	YPD4_2369
YPD4_2370	PF06711	YPD4_2370
YPD4_2371	PF09400	Protein of unknown function (DUF2002)
YPD4_2372	PF06392	YPD4_2372
YPD4_2373	PF07972	NrdI Flavodoxin like
YPD4_2374	PF08343	Ribonucleotide reductase N-terminal
YPD4_2375	PF02867	Ribonucleotide reductase, barrel domain
YPD4_2376	PF00268	Ribonucleotide reductase, small chain
YPD4_2377	PF00005	ABC transporter
YPD4_2377	PF00571	CBS domain
YPD4_2378	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_2379	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
YPD4_2380	PF01522	Polysaccharide deacetylase
YPD4_2381	PF00665	Integrase core domain
YPD4_2381	PF02796	Helix-turn-helix domain of resolvase
YPD4_2382	PF01695	IstB-like ATP binding protein
YPD4_2383	PF13356	Domain of unknown function (DUF4102)
YPD4_2384	PF12697	Alpha/beta hydrolase family
YPD4_2385	PF00258	Flavodoxin
YPD4_2386	PF01475	Ferric uptake regulator family
YPD4_2387	PF00728	Glycosyl hydrolase family 20, catalytic domain
YPD4_2387	PF02838	Glycosyl hydrolase family 20, domain 2
YPD4_2387	PF03174	Chitobiase/beta-hexosaminidase C-terminal domain
YPD4_2388	PF03173	Putative carbohydrate binding domain
YPD4_2389	PF03573	outer membrane porin, OprD family
YPD4_2390	PF00749	tRNA synthetases class I (E and Q), catalytic domain
YPD4_2390	PF03950	tRNA synthetases class I (E and Q), anti-codon binding domain
YPD4_2391	PF01797	Transposase IS200 like
YPD4_2392	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
YPD4_2392	PF00367	phosphotransferase system, EIIB
YPD4_2393	PF02378	Phosphotransferase system, EIIC
YPD4_2394	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
YPD4_2395	PF01979	Amidohydrolase family
YPD4_2396	PF00480	ROK family
YPD4_2396	PF01047	MarR family
YPD4_2397	PF13242	HAD-hyrolase-like
YPD4_2397	PF13344	Haloacid dehalogenase-like hydrolase
YPD4_2398	PF00733	Asparagine synthase
YPD4_2398	PF13537	Glutamine amidotransferase domain
YPD4_2399	PF01494	FAD binding domain
YPD4_2400	PF00919	Uncharacterized protein family UPF0004
YPD4_2400	PF01938	TRAM domain
YPD4_2400	PF04055	Radical SAM superfamily
YPD4_2401	PF02562	PhoH-like protein
YPD4_2402	PF02130	Uncharacterized protein family UPF0054
YPD4_2403	PF00571	CBS domain
YPD4_2403	PF03471	Transporter associated domain
YPD4_2404	PF00795	Carbon-nitrogen hydrolase
YPD4_2405	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPD4_2406	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_2407	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_2408	PF00005	ABC transporter
YPD4_2409	PF07295	YPD4_2409
YPD4_2410	PF00133	tRNA synthetases class I (I, L, M and V)
YPD4_2410	PF08264	Anticodon-binding domain of tRNA
YPD4_2410	PF13603	Leucyl-tRNA synthetase, Domain 2
YPD4_2411	PF04390	Lipopolysaccharide-assembly
YPD4_2412	PF06144	DNA polymerase III, delta subunit
YPD4_2412	PF14840	Processivity clamp loader gamma complex DNA pol III C-term
YPD4_2413	PF01467	Cytidylyltransferase
YPD4_2414	PF02410	Oligomerisation domain
YPD4_2415	PF02590	Predicted SPOUT methyltransferase
YPD4_2416	PF00905	Penicillin binding protein transpeptidase domain
YPD4_2416	PF03717	Penicillin-binding Protein dimerisation domain
YPD4_2417	PF01098	YPD4_2417
YPD4_2418	PF03330	Rare lipoprotein A (RlpA)-like double-psi beta-barrel
YPD4_2419	PF05036	Sporulation related domain
YPD4_2420	PF00768	D-alanyl-D-alanine carboxypeptidase
YPD4_2420	PF07943	Penicillin-binding protein 5, C-terminal domain
YPD4_2421	PF03099	Biotin/lipoate A/B protein ligase family
YPD4_2422	PF04055	Radical SAM superfamily
YPD4_2422	PF16881	YPD4_2422
YPD4_2423	PF02537	YPD4_2423
YPD4_2424	PF00313	'Cold-shock' DNA-binding domain
YPD4_2425	PF00196	Bacterial regulatory proteins, luxR family
YPD4_2427	PF00005	ABC transporter
YPD4_2427	PF00664	ABC transporter transmembrane region
YPD4_2429	PF04962	KduI/IolB family
YPD4_2430	PF01261	Xylose isomerase-like TIM barrel
YPD4_2431	PF00294	pfkB family carbohydrate kinase
YPD4_2431	PF09863	Uncharacterized protein conserved in bacteria (DUF2090)
YPD4_2432	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPD4_2432	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
YPD4_2433	PF02653	YPD4_2433
YPD4_2434	PF00005	ABC transporter
YPD4_2435	PF13407	Periplasmic binding protein domain
YPD4_2437	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPD4_2438	PF00205	Thiamine pyrophosphate enzyme, central domain
YPD4_2438	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPD4_2438	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YPD4_2439	PF00171	Aldehyde dehydrogenase family
YPD4_2440	PF01380	SIS domain
YPD4_2440	PF01418	Helix-turn-helix domain, rpiR family
YPD4_2441	PF07274	YPD4_2441
YPD4_2442	PF00207	Alpha-2-macroglobulin family
YPD4_2442	PF01835	MG2 domain
YPD4_2442	PF07703	Alpha-2-macroglobulin family N-terminal region
YPD4_2442	PF11974	Alpha-2-macroglobulin MG1 domain
YPD4_2443	PF00912	Transglycosylase
YPD4_2444	PF00872	YPD4_2444
YPD4_2445	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YPD4_2446	PF00356	Bacterial regulatory proteins, lacI family
YPD4_2446	PF13377	Periplasmic binding protein-like domain
YPD4_2447	PF01515	Phosphate acetyl/butaryl transferase
YPD4_2447	PF07085	DRTGG domain
YPD4_2447	PF13500	AAA domain
YPD4_2448	PF00871	Acetokinase family
YPD4_2449	PF04217	YPD4_2449
YPD4_2450	PF03887	YfbU domain
YPD4_2451	PF13419	Haloacid dehalogenase-like hydrolase
YPD4_2452	PF02080	TrkA-C domain
YPD4_2452	PF03600	Citrate transporter
YPD4_2453	PF13023	HD domain
YPD4_2454	PF00155	Aminotransferase class I and II
YPD4_2455	PF03466	LysR substrate binding domain
YPD4_2456	PF00507	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
YPD4_2457	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
YPD4_2458	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit
YPD4_2458	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
YPD4_2459	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin
YPD4_2460	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
YPD4_2460	PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
YPD4_2461	PF00384	Molybdopterin oxidoreductase
YPD4_2461	PF01568	Molydopterin dinucleotide binding domain
YPD4_2461	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YPD4_2461	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
YPD4_2461	PF13510	2Fe-2S iron-sulfur cluster binding domain
YPD4_2462	PF00146	NADH dehydrogenase
YPD4_2463	PF12838	4Fe-4S dicluster domain
YPD4_2464	PF00499	NADH-ubiquinone/plastoquinone oxidoreductase chain 6
YPD4_2465	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
YPD4_2466	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
YPD4_2466	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
YPD4_2467	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
YPD4_2468	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
YPD4_2470	PF04074	Domain of unknown function (DUF386)
YPD4_2471	PF01202	Shikimate kinase
YPD4_2472	PF00106	short chain dehydrogenase
YPD4_2473	PF02638	YPD4_2473
YPD4_2474	PF00356	Bacterial regulatory proteins, lacI family
YPD4_2474	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YPD4_2475	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YPD4_2475	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YPD4_2476	PF07690	Major Facilitator Superfamily
YPD4_2477	PF03928	Domain of unknown function (DUF336)
YPD4_2478	PF00920	Dehydratase family
YPD4_2479	PF05957	YPD4_2479
YPD4_2481	PF00425	chorismate binding enzyme
YPD4_2482	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPD4_2482	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YPD4_2482	PF16582	YPD4_2482
YPD4_2483	PF12697	Alpha/beta hydrolase family
YPD4_2484	PF00378	Enoyl-CoA hydratase/isomerase family
YPD4_2485	PF13378	Enolase C-terminal domain-like
YPD4_2486	PF00501	AMP-binding enzyme
YPD4_2487	PF00591	Glycosyl transferase family, a/b domain
YPD4_2487	PF02885	Glycosyl transferase family, helical bundle domain
YPD4_2488	PF05971	Protein of unknown function (DUF890)
YPD4_2489	PF01695	IstB-like ATP binding protein
YPD4_2490	PF00665	Integrase core domain
YPD4_2490	PF02796	Helix-turn-helix domain of resolvase
YPD4_2491	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_2491	PF03466	LysR substrate binding domain
YPD4_2492	PF00248	Aldo/keto reductase family
YPD4_2493	PF00248	Aldo/keto reductase family
YPD4_2495	PF00933	Glycosyl hydrolase family 3 N terminal domain
YPD4_2495	PF01915	Glycosyl hydrolase family 3 C-terminal domain
YPD4_2495	PF14310	Fibronectin type III-like domain
YPD4_2496	PF14345	YPD4_2496
YPD4_2497	PF09925	YPD4_2497
YPD4_2497	PF14351	YPD4_2497
YPD4_2498	PF00872	YPD4_2498
YPD4_2500	PF11459	YPD4_2500
YPD4_2500	PF17194	YPD4_2500
YPD4_2501	PF03212	Pertactin
YPD4_2501	PF03797	Autotransporter beta-domain
YPD4_2502	PF05638	Protein of unknown function (DUF796)
YPD4_2503	PF06836	YPD4_2503
YPD4_2504	PF06836	YPD4_2504
YPD4_2506	PF00905	Penicillin binding protein transpeptidase domain
YPD4_2506	PF06832	YPD4_2506
YPD4_2507	PF00872	YPD4_2507
YPD4_2508	PF03611	YPD4_2508
YPD4_2509	PF00293	NUDIX domain
YPD4_2510	PF12850	Calcineurin-like phosphoesterase superfamily domain
YPD4_2511	PF00563	EAL domain
YPD4_2512	PF01370	NAD dependent epimerase/dehydratase family
YPD4_2512	PF08338	Domain of unknown function (DUF1731)
YPD4_2513	PF00005	ABC transporter
YPD4_2514	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_2515	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_2516	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPD4_2517	PF02441	Flavoprotein
YPD4_2518	PF00156	Phosphoribosyl transferase domain
YPD4_2518	PF13522	Glutamine amidotransferase domain
YPD4_2519	PF02674	YPD4_2519
YPD4_2520	PF05036	Sporulation related domain
YPD4_2521	PF02875	Mur ligase family, glutamate ligase domain
YPD4_2521	PF08245	Mur ligase middle domain
YPD4_2522	PF01039	Carboxyl transferase domain
YPD4_2523	PF09335	YPD4_2523
YPD4_2524	PF01416	tRNA pseudouridine synthase
YPD4_2525	PF01118	Semialdehyde dehydrogenase, NAD binding domain
YPD4_2525	PF02774	Semialdehyde dehydrogenase, dimerisation domain
YPD4_2526	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YPD4_2526	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YPD4_2526	PF11890	Domain of unknown function (DUF3410)
YPD4_2527	PF12833	Helix-turn-helix domain
YPD4_2528	PF00892	EamA-like transporter family
YPD4_2530	PF00419	Fimbrial protein
YPD4_2531	PF01177	Asp/Glu/Hydantoin racemase
YPD4_2532	PF00109	Beta-ketoacyl synthase, N-terminal domain
YPD4_2532	PF02801	Beta-ketoacyl synthase, C-terminal domain
YPD4_2533	PF00109	Beta-ketoacyl synthase, N-terminal domain
YPD4_2534	PF01266	FAD dependent oxidoreductase
YPD4_2534	PF05430	S-adenosyl-L-methionine-dependent methyltransferase
YPD4_2535	PF04315	YPD4_2535
YPD4_2536	PF01925	YPD4_2536
YPD4_2537	PF03411	Penicillin-insensitive murein endopeptidase
YPD4_2538	PF01264	Chorismate synthase
YPD4_2539	PF05175	Methyltransferase small domain
YPD4_2540	PF01713	Smr domain
YPD4_2541	PF00300	Histidine phosphatase superfamily (branch 1)
YPD4_2542	PF00378	Enoyl-CoA hydratase/isomerase family
YPD4_2542	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
YPD4_2542	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
YPD4_2543	PF00108	Thiolase, N-terminal domain
YPD4_2543	PF02803	Thiolase, C-terminal domain
YPD4_2544	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
YPD4_2545	PF04333	YPD4_2545
YPD4_2546	PF14559	Tetratricopeptide repeat
YPD4_2547	PF03918	Cytochrome C biogenesis protein
YPD4_2548	PF08534	Redoxin
YPD4_2549	PF01578	YPD4_2549
YPD4_2549	PF16327	YPD4_2549
YPD4_2550	PF03100	CcmE
YPD4_2551	PF04995	YPD4_2551
YPD4_2552	PF01578	YPD4_2552
YPD4_2553	PF03379	YPD4_2553
YPD4_2554	PF00005	ABC transporter
YPD4_2556	PF04011	LemA family
YPD4_2557	PF09972	YPD4_2557
YPD4_2558	PF03831	PhnA protein
YPD4_2558	PF08274	PhnA Zinc-Ribbon
YPD4_2560	PF04965	Gene 25-like lysozyme
YPD4_2561	PF07024	ImpE protein
YPD4_2563	PF05954	Phage late control gene D protein (GPD)
YPD4_2564	PF06744	YPD4_2564
YPD4_2564	PF06761	YPD4_2564
YPD4_2564	PF14331	YPD4_2564
YPD4_2565	PF00691	OmpA family
YPD4_2566	PF01695	IstB-like ATP binding protein
YPD4_2567	PF00665	Integrase core domain
YPD4_2567	PF02796	Helix-turn-helix domain of resolvase
YPD4_2568	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
YPD4_2569	PF05936	YPD4_2569
YPD4_2570	PF12790	Type VI secretion lipoprotein
YPD4_2571	PF05638	Protein of unknown function (DUF796)
YPD4_2572	PF05943	YPD4_2572
YPD4_2573	PF05591	YPD4_2573
YPD4_2574	PF00419	Fimbrial protein
YPD4_2575	PF00577	Outer membrane usher protein
YPD4_2575	PF13953	PapC C-terminal domain
YPD4_2576	PF00872	YPD4_2576
YPD4_2577	PF00577	Outer membrane usher protein
YPD4_2577	PF13954	PapC N-terminal domain
YPD4_2578	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPD4_2578	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPD4_2579	PF16970	YPD4_2579
YPD4_2580	PF00004	ATPase family associated with various cellular activities (AAA)
YPD4_2580	PF07724	AAA domain (Cdc48 subfamily)
YPD4_2580	PF10431	C-terminal, D2-small domain, of ClpB protein
YPD4_2581	PF05947	YPD4_2581
YPD4_2582	PF06996	YPD4_2582
YPD4_2583	PF06812	YPD4_2583
YPD4_2584	PF00419	Fimbrial protein
YPD4_2585	PF11397	YPD4_2585
YPD4_2587	PF00691	OmpA family
YPD4_2588	PF08786	Domain of unknown function (DUF1795)
YPD4_2589	PF00196	Bacterial regulatory proteins, luxR family
YPD4_2590	PF13406	Transglycosylase SLT domain
YPD4_2591	PF13343	Bacterial extracellular solute-binding protein
YPD4_2592	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_2593	PF00005	ABC transporter
YPD4_2594	PF09900	YPD4_2594
YPD4_2595	PF13988	YPD4_2595
YPD4_2596	PF00384	Molybdopterin oxidoreductase
YPD4_2596	PF01568	Molydopterin dinucleotide binding domain
YPD4_2596	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YPD4_2597	PF12800	4Fe-4S binding domain
YPD4_2597	PF13247	4Fe-4S dicluster domain
YPD4_2598	PF04976	YPD4_2598
YPD4_2599	PF02613	Nitrate reductase delta subunit
YPD4_2600	PF00037	4Fe-4S binding domain
YPD4_2600	PF12838	4Fe-4S dicluster domain
YPD4_2601	PF05643	Putative bacterial lipoprotein (DUF799)
YPD4_2602	PF16068	YPD4_2602
YPD4_2603	PF03783	Curli production assembly/transport component CsgG
YPD4_2604	PF15970	YPD4_2604
YPD4_2605	PF01292	Prokaryotic cytochrome b561
YPD4_2606	PF00155	Aminotransferase class I and II
YPD4_2607	PF07350	Protein of unknown function (DUF1479)
YPD4_2608	PF02685	Glucokinase
YPD4_2609	PF05232	YPD4_2609
YPD4_2610	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_2610	PF03466	LysR substrate binding domain
YPD4_2611	PF00248	Aldo/keto reductase family
YPD4_2612	PF10697	YPD4_2612
YPD4_2613	PF01566	YPD4_2613
YPD4_2614	PF01773	Na+ dependent nucleoside transporter N-terminus
YPD4_2614	PF07662	Na+ dependent nucleoside transporter C-terminus
YPD4_2614	PF07670	Nucleoside recognition
YPD4_2615	PF00749	tRNA synthetases class I (E and Q), catalytic domain
YPD4_2616	PF01797	Transposase IS200 like
YPD4_2617	PF06042	Bacterial protein of unknown function (DUF925)
YPD4_2618	PF14282	YPD4_2618
YPD4_2619	PF00533	BRCA1 C Terminus (BRCT) domain
YPD4_2619	PF01653	NAD-dependent DNA ligase adenylation domain
YPD4_2619	PF03119	NAD-dependent DNA ligase C4 zinc finger domain
YPD4_2619	PF03120	NAD-dependent DNA ligase OB-fold domain
YPD4_2619	PF12826	Helix-hairpin-helix motif
YPD4_2619	PF14520	Helix-hairpin-helix domain
YPD4_2620	PF04354	ZipA, C-terminal FtsZ-binding domain
YPD4_2621	PF07264	Etoposide-induced protein 2
YPD4_2622	PF00291	Pyridoxal-phosphate dependent enzyme
YPD4_2623	PF00391	PEP-utilising enzyme, mobile domain
YPD4_2623	PF02896	PEP-utilising enzyme, TIM barrel domain
YPD4_2623	PF05524	PEP-utilising enzyme, N-terminal
YPD4_2624	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
YPD4_2625	PF01797	Transposase IS200 like
YPD4_2626	PF00512	His Kinase A (phospho-acceptor) domain
YPD4_2626	PF00672	HAMP domain
YPD4_2626	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_2627	PF00072	Response regulator receiver domain
YPD4_2627	PF00486	Transcriptional regulatory protein, C terminal
YPD4_2628	PF16576	YPD4_2628
YPD4_2629	PF00005	ABC transporter
YPD4_2629	PF02687	YPD4_2629
YPD4_2629	PF12704	MacB-like periplasmic core domain
YPD4_2630	PF00581	Rhodanese-like domain
YPD4_2630	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YPD4_2630	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPD4_2632	PF00557	Metallopeptidase family M24
YPD4_2632	PF01321	Creatinase/Prolidase N-terminal domain
YPD4_2633	PF00155	Aminotransferase class I and II
YPD4_2634	PF00092	von Willebrand factor type A domain
YPD4_2635	PF00512	His Kinase A (phospho-acceptor) domain
YPD4_2635	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_2636	PF00072	Response regulator receiver domain
YPD4_2636	PF00486	Transcriptional regulatory protein, C terminal
YPD4_2638	PF00291	Pyridoxal-phosphate dependent enzyme
YPD4_2639	PF00005	ABC transporter
YPD4_2640	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_2641	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_2642	PF13531	Bacterial extracellular solute-binding protein
YPD4_2643	PF07690	Major Facilitator Superfamily
YPD4_2644	PF01380	SIS domain
YPD4_2644	PF01418	Helix-turn-helix domain, rpiR family
YPD4_2645	PF04074	Domain of unknown function (DUF386)
YPD4_2646	PF00480	ROK family
YPD4_2647	PF12468	Type III secretion system leucine rich repeat protein
YPD4_2647	PF13855	Leucine rich repeat
YPD4_2649	PF04131	Putative N-acetylmannosamine-6-phosphate epimerase
YPD4_2650	PF00701	Dihydrodipicolinate synthetase family
YPD4_2651	PF04261	Dyp-type peroxidase family
YPD4_2652	PF06572	Protein of unknown function (DUF1131)
YPD4_2653	PF04076	Bacterial OB fold (BOF) protein
YPD4_2654	PF03212	Pertactin
YPD4_2654	PF03797	Autotransporter beta-domain
YPD4_2656	PF00583	Acetyltransferase (GNAT) family
YPD4_2657	PF01218	Coproporphyrinogen III oxidase
YPD4_2658	PF02639	YPD4_2658
YPD4_2659	PF00390	Malic enzyme, N-terminal domain
YPD4_2659	PF01515	Phosphate acetyl/butaryl transferase
YPD4_2659	PF03949	Malic enzyme, NAD binding domain
YPD4_2660	PF00293	NUDIX domain
YPD4_2661	PF03264	NapC/NirT cytochrome c family, N-terminal region
YPD4_2662	PF03892	Nitrate reductase cytochrome c-type subunit (NapB)
YPD4_2663	PF00384	Molybdopterin oxidoreductase
YPD4_2663	PF01568	Molydopterin dinucleotide binding domain
YPD4_2663	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YPD4_2663	PF10518	TAT (twin-arginine translocation) pathway signal sequence
YPD4_2664	PF12838	4Fe-4S dicluster domain
YPD4_2664	PF13187	4Fe-4S dicluster domain
YPD4_2665	PF00072	Response regulator receiver domain
YPD4_2665	PF00196	Bacterial regulatory proteins, luxR family
YPD4_2666	PF00873	AcrB/AcrD/AcrF family
YPD4_2668	PF04307	YPD4_2668
YPD4_2669	PF04055	Radical SAM superfamily
YPD4_2669	PF13353	4Fe-4S single cluster domain
YPD4_2670	PF00884	Sulfatase
YPD4_2671	PF00005	ABC transporter
YPD4_2672	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_2673	PF13416	Bacterial extracellular solute-binding protein
YPD4_2674	PF12688	Tetratrico peptide repeat
YPD4_2675	PF03960	ArsC family
YPD4_2676	PF01546	Peptidase family M20/M25/M40
YPD4_2676	PF07687	Peptidase dimerisation domain
YPD4_2677	PF02557	D-alanyl-D-alanine carboxypeptidase
YPD4_2678	PF13718	GNAT acetyltransferase 2
YPD4_2678	PF17176	YPD4_2678
YPD4_2679	PF05127	Helicase
YPD4_2679	PF08351	Domain of unknown function (DUF1726)
YPD4_2680	PF04284	YPD4_2680
YPD4_2681	PF04228	YPD4_2681
YPD4_2682	PF01259	SAICAR synthetase
YPD4_2683	PF01797	Transposase IS200 like
YPD4_2684	PF06804	NlpB/DapX lipoprotein
YPD4_2685	PF00701	Dihydrodipicolinate synthetase family
YPD4_2686	PF13740	ACT domain
YPD4_2687	PF00578	AhpC/TSA family
YPD4_2689	PF01594	YPD4_2689
YPD4_2690	PF01435	Peptidase family M48
YPD4_2690	PF07720	Tetratricopeptide repeat
YPD4_2690	PF14559	Tetratricopeptide repeat
YPD4_2691	PF03960	ArsC family
YPD4_2692	PF00308	Bacterial dnaA  protein
YPD4_2693	PF01797	Transposase IS200 like
YPD4_2694	PF01406	tRNA synthetases class I (C) catalytic domain
YPD4_2694	PF09190	DALR domain
YPD4_2695	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
YPD4_2696	PF00149	Calcineurin-like phosphoesterase
YPD4_2697	PF00731	AIR carboxylase
YPD4_2698	PF02222	ATP-grasp domain
YPD4_2699	PF02687	YPD4_2699
YPD4_2701	PF00005	ABC transporter
YPD4_2702	PF13472	GDSL-like Lipase/Acylhydrolase family
YPD4_2703	PF00106	short chain dehydrogenase
YPD4_2704	PF00085	Thioredoxin
YPD4_2704	PF14559	Tetratricopeptide repeat
YPD4_2704	PF14561	Tetratricopeptide repeat
YPD4_2705	PF01145	SPFH domain / Band 7 family
YPD4_2706	PF01957	NfeD-like C-terminal, partner-binding
YPD4_2707	PF13411	MerR HTH family regulatory protein
YPD4_2708	PF00122	E1-E2 ATPase
YPD4_2708	PF00403	Heavy-metal-associated domain
YPD4_2708	PF00702	haloacid dehalogenase-like hydrolase
YPD4_2709	PF01963	YPD4_2709
YPD4_2710	PF04073	Aminoacyl-tRNA editing domain
YPD4_2711	PF02872	5'-nucleotidase, C-terminal domain
YPD4_2712	PF00149	Calcineurin-like phosphoesterase
YPD4_2713	PF07690	Major Facilitator Superfamily
YPD4_2714	PF00999	Sodium/hydrogen exchanger family
YPD4_2714	PF02254	TrkA-N domain
YPD4_2715	PF00294	pfkB family carbohydrate kinase
YPD4_2717	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
YPD4_2717	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YPD4_2717	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
YPD4_2717	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
YPD4_2718	PF00535	Glycosyl transferase family 2
YPD4_2719	PF00483	Nucleotidyl transferase
YPD4_2719	PF01050	Mannose-6-phosphate isomerase
YPD4_2720	PF01370	NAD dependent epimerase/dehydratase family
YPD4_2721	PF16363	YPD4_2721
YPD4_2722	PF16363	YPD4_2722
YPD4_2723	PF00534	Glycosyl transferases group 1
YPD4_2723	PF13439	Glycosyltransferase Family 4
YPD4_2725	PF13692	Glycosyl transferases group 1
YPD4_2726	PF00535	Glycosyl transferase family 2
YPD4_2728	PF13450	NAD(P)-binding Rossmann-like domain
YPD4_2729	PF01370	NAD dependent epimerase/dehydratase family
YPD4_2730	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
YPD4_2731	PF16363	YPD4_2731
YPD4_2732	PF00483	Nucleotidyl transferase
YPD4_2733	PF00111	2Fe-2S iron-sulfur cluster binding domain
YPD4_2733	PF00175	Oxidoreductase NAD-binding domain
YPD4_2733	PF00970	Oxidoreductase FAD-binding domain
YPD4_2734	PF00762	Ferrochelatase
YPD4_2735	PF00406	Adenylate kinase
YPD4_2735	PF05191	Adenylate kinase, active site lid
YPD4_2736	PF00183	Hsp90 protein
YPD4_2736	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_2737	PF02132	RecR protein
YPD4_2737	PF13662	Toprim domain
YPD4_2738	PF02575	YbaB/EbfC DNA-binding family
YPD4_2739	PF12168	YPD4_2739
YPD4_2739	PF12169	DNA polymerase III subunits gamma and tau domain III
YPD4_2739	PF12170	DNA polymerase III tau subunit V interacting with alpha
YPD4_2739	PF13177	DNA polymerase III, delta subunit
YPD4_2740	PF00156	Phosphoribosyl transferase domain
YPD4_2741	PF07445	Primosomal replication protein priB and priC
YPD4_2742	PF00924	Mechanosensitive ion channel
YPD4_2742	PF12794	YPD4_2742
YPD4_2742	PF12795	YPD4_2742
YPD4_2743	PF02635	DsrE/DsrF-like family
YPD4_2744	PF00440	Bacterial regulatory proteins, tetR family
YPD4_2744	PF08361	MAATS-type transcriptional repressor, C-terminal region
YPD4_2745	PF00529	HlyD family secretion protein
YPD4_2745	PF16576	YPD4_2745
YPD4_2746	PF00873	AcrB/AcrD/AcrF family
YPD4_2747	PF00873	AcrB/AcrD/AcrF family
YPD4_2749	PF10757	YPD4_2749
YPD4_2750	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
YPD4_2751	PF09619	Type III secretion system lipoprotein chaperone (YscW)
YPD4_2752	PF13622	Thioesterase-like superfamily
YPD4_2753	PF00909	Ammonium Transporter Family
YPD4_2754	PF00543	Nitrogen regulatory protein P-II
YPD4_2755	PF00005	ABC transporter
YPD4_2755	PF00664	ABC transporter transmembrane region
YPD4_2756	PF00005	ABC transporter
YPD4_2756	PF00664	ABC transporter transmembrane region
YPD4_2757	PF01037	AsnC family
YPD4_2757	PF13412	Winged helix-turn-helix DNA-binding
YPD4_2758	PF00291	Pyridoxal-phosphate dependent enzyme
YPD4_2759	PF08282	haloacid dehalogenase-like hydrolase
YPD4_2760	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPD4_2760	PF12793	YPD4_2760
YPD4_2761	PF06508	Queuosine biosynthesis protein QueC
YPD4_2762	PF13279	Thioesterase-like superfamily
YPD4_2763	PF12836	Helix-hairpin-helix motif
YPD4_2764	PF13145	PPIC-type PPIASE domain
YPD4_2764	PF13624	SurA N-terminal domain
YPD4_2765	PF05362	Lon protease (S16) C-terminal proteolytic domain
YPD4_2766	PF00004	ATPase family associated with various cellular activities (AAA)
YPD4_2766	PF02190	ATP-dependent protease La (LON) domain
YPD4_2766	PF05362	Lon protease (S16) C-terminal proteolytic domain
YPD4_2767	PF06689	ClpX C4-type zinc finger
YPD4_2767	PF07724	AAA domain (Cdc48 subfamily)
YPD4_2767	PF10431	C-terminal, D2-small domain, of ClpB protein
YPD4_2768	PF00574	Clp protease
YPD4_2769	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
YPD4_2769	PF05697	Bacterial trigger factor protein (TF)
YPD4_2769	PF05698	Bacterial trigger factor protein (TF) C-terminus
YPD4_2770	PF01722	BolA-like protein
YPD4_2771	PF03923	YPD4_2771
YPD4_2771	PF08139	YPD4_2771
YPD4_2772	PF07690	Major Facilitator Superfamily
YPD4_2773	PF03502	Nucleoside-specific channel-forming protein, Tsx
YPD4_2774	PF06481	COX Aromatic Rich Motif
YPD4_2775	PF00115	Cytochrome C and Quinol oxidase polypeptide I
YPD4_2776	PF00510	Cytochrome c oxidase subunit III
YPD4_2777	PF03626	YPD4_2777
YPD4_2778	PF01040	UbiA prenyltransferase family
YPD4_2779	PF07690	Major Facilitator Superfamily
YPD4_2780	PF04461	Protein of unknown function (DUF520)
YPD4_2781	PF02558	Ketopantoate reductase PanE/ApbA
YPD4_2781	PF08546	Ketopantoate reductase PanE/ApbA C terminal
YPD4_2782	PF01965	DJ-1/PfpI family
YPD4_2783	PF02568	Thiamine biosynthesis protein (ThiI)
YPD4_2783	PF02926	THUMP domain
YPD4_2784	PF00348	Polyprenyl synthetase
YPD4_2785	PF02779	Transketolase, pyrimidine binding domain
YPD4_2785	PF02780	Transketolase, C-terminal domain
YPD4_2785	PF13292	1-deoxy-D-xylulose-5-phosphate synthase
YPD4_2786	PF01797	Transposase IS200 like
YPD4_2787	PF04608	Phosphatidylglycerophosphatase A
YPD4_2788	PF00586	AIR synthase related protein, N-terminal domain
YPD4_2788	PF02769	AIR synthase related protein, C-terminal domain
YPD4_2789	PF01029	NusB family
YPD4_2790	PF00885	6,7-dimethyl-8-ribityllumazine synthase
YPD4_2791	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
YPD4_2791	PF01872	RibD C-terminal domain
YPD4_2792	PF03477	ATP cone domain
YPD4_2795	PF02355	Protein export membrane protein
YPD4_2795	PF07549	SecD/SecF GG Motif
YPD4_2796	PF02355	Protein export membrane protein
YPD4_2796	PF07549	SecD/SecF GG Motif
YPD4_2796	PF13721	SecD export protein N-terminal TM region
YPD4_2797	PF02699	Preprotein translocase subunit
YPD4_2798	PF01702	Queuine tRNA-ribosyltransferase
YPD4_2799	PF02547	Queuosine biosynthesis protein
YPD4_2800	PF04336	YPD4_2800
YPD4_2801	PF00578	AhpC/TSA family
YPD4_2801	PF10417	C-terminal domain of 1-Cys peroxiredoxin
YPD4_2802	PF01019	Gamma-glutamyltranspeptidase
YPD4_2803	PF00106	short chain dehydrogenase
YPD4_2804	PF00128	Alpha amylase, catalytic domain
YPD4_2804	PF02903	Alpha amylase, N-terminal ig-like domain
YPD4_2805	PF00324	Amino acid permease
YPD4_2806	PF05525	YPD4_2806
YPD4_2807	PF12849	PBP superfamily domain
YPD4_2808	PF00512	His Kinase A (phospho-acceptor) domain
YPD4_2808	PF00989	PAS fold
YPD4_2808	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_2808	PF11808	YPD4_2808
YPD4_2809	PF00072	Response regulator receiver domain
YPD4_2809	PF00486	Transcriptional regulatory protein, C terminal
YPD4_2810	PF00149	Calcineurin-like phosphoesterase
YPD4_2810	PF12320	Type 5 capsule protein repressor C-terminal domain
YPD4_2811	PF13476	AAA domain
YPD4_2811	PF13558	Putative exonuclease SbcCD, C subunit
YPD4_2812	PF00480	ROK family
YPD4_2813	PF04381	Putative exonuclease, RdgC
YPD4_2814	PF01202	Shikimate kinase
YPD4_2815	PF00398	Ribosomal RNA adenine dimethylase
YPD4_2816	PF08241	Methyltransferase domain
YPD4_2817	PF07238	PilZ domain
YPD4_2817	PF07317	Flagellar regulator YcgR
YPD4_2818	PF00171	Aldehyde dehydrogenase family
YPD4_2819	PF00696	Amino acid kinase family
YPD4_2819	PF01472	PUA domain
YPD4_2820	PF07417	Transcriptional regulator Crl
YPD4_2821	PF06500	Alpha/beta hydrolase of unknown function (DUF1100)
YPD4_2822	PF00156	Phosphoribosyl transferase domain
YPD4_2823	PF03067	Chitin binding domain
YPD4_2825	PF01546	Peptidase family M20/M25/M40
YPD4_2825	PF07687	Peptidase dimerisation domain
YPD4_2826	PF00817	impB/mucB/samB family
YPD4_2826	PF11798	IMS family HHH motif
YPD4_2826	PF11799	impB/mucB/samB family C-terminal domain
YPD4_2827	PF03009	Glycerophosphoryl diester phosphodiesterase family
YPD4_2828	PF02424	ApbE family
YPD4_2829	PF00111	2Fe-2S iron-sulfur cluster binding domain
YPD4_2829	PF00175	Oxidoreductase NAD-binding domain
YPD4_2829	PF00970	Oxidoreductase FAD-binding domain
YPD4_2830	PF02508	YPD4_2830
YPD4_2831	PF02508	YPD4_2831
YPD4_2832	PF04205	FMN-binding domain
YPD4_2833	PF03116	YPD4_2833
YPD4_2834	PF05896	YPD4_2834
YPD4_2834	PF11973	YPD4_2834
YPD4_2835	PF03734	L,D-transpeptidase catalytic domain
YPD4_2836	PF13230	Glutamine amidotransferases class-II
YPD4_2837	PF13580	SIS domain
YPD4_2838	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
YPD4_2838	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
YPD4_2838	PF09317	YPD4_2838
YPD4_2839	PF03333	Adhesin biosynthesis transcription regulatory protein
YPD4_2841	PF05860	haemagglutination activity domain
YPD4_2841	PF13018	YPD4_2841
YPD4_2842	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YPD4_2842	PF08479	POTRA domain, ShlB-type
YPD4_2843	PF01546	Peptidase family M20/M25/M40
YPD4_2845	PF00665	Integrase core domain
YPD4_2845	PF02796	Helix-turn-helix domain of resolvase
YPD4_2846	PF01695	IstB-like ATP binding protein
YPD4_2847	PF00266	Aminotransferase class-V
YPD4_2848	PF00005	ABC transporter
YPD4_2849	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_2850	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_2851	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPD4_2852	PF01380	SIS domain
YPD4_2852	PF01418	Helix-turn-helix domain, rpiR family
YPD4_2853	PF01425	Amidase
YPD4_2854	PF11533	Protein of unknown function (DUF3225)
YPD4_2855	PF07690	Major Facilitator Superfamily
YPD4_2856	PF03591	YPD4_2856
YPD4_2857	PF05437	YPD4_2857
YPD4_2858	PF01047	MarR family
YPD4_2859	PF00529	HlyD family secretion protein
YPD4_2859	PF16576	YPD4_2859
YPD4_2860	PF07690	Major Facilitator Superfamily
YPD4_2861	PF07690	Major Facilitator Superfamily
YPD4_2862	PF00588	SpoU rRNA Methylase family
YPD4_2862	PF08032	RNA 2'-O ribose methyltransferase substrate binding
YPD4_2863	PF03942	YPD4_2863
YPD4_2864	PF00583	Acetyltransferase (GNAT) family
YPD4_2864	PF13380	CoA binding domain
YPD4_2864	PF13549	ATP-grasp domain
YPD4_2864	PF13607	Succinyl-CoA ligase like flavodoxin domain
YPD4_2865	PF13091	PLD-like domain
YPD4_2866	PF10043	YPD4_2866
YPD4_2868	PF00004	ATPase family associated with various cellular activities (AAA)
YPD4_2868	PF07724	AAA domain (Cdc48 subfamily)
YPD4_2868	PF10431	C-terminal, D2-small domain, of ClpB protein
YPD4_2869	PF02861	Clp amino terminal domain
YPD4_2870	PF02578	Multi-copper polyphenol oxidoreductase laccase
YPD4_2871	PF00849	RNA pseudouridylate synthase
YPD4_2871	PF01479	S4 domain
YPD4_2872	PF13525	Outer membrane lipoprotein
YPD4_2873	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
YPD4_2874	PF01797	Transposase IS200 like
YPD4_2875	PF00800	Prephenate dehydratase
YPD4_2875	PF01817	Chorismate mutase type II
YPD4_2876	PF01817	Chorismate mutase type II
YPD4_2876	PF02153	Prephenate dehydrogenase
YPD4_2877	PF00793	DAHP synthetase I family
YPD4_2878	PF00793	DAHP synthetase I family
YPD4_2879	PF00072	Response regulator receiver domain
YPD4_2879	PF04397	LytTr DNA-binding domain
YPD4_2880	PF03605	YPD4_2880
YPD4_2881	PF03605	YPD4_2881
YPD4_2882	PF04338	Protein of unknown function, DUF481
YPD4_2883	PF01797	Transposase IS200 like
YPD4_2884	PF01245	Ribosomal protein L19
YPD4_2885	PF01746	tRNA (Guanine-1)-methyltransferase
YPD4_2886	PF01782	RimM N-terminal domain
YPD4_2886	PF05239	PRC-barrel domain
YPD4_2887	PF00448	SRP54-type protein, GTPase domain
YPD4_2887	PF02881	SRP54-type protein, helical bundle domain
YPD4_2887	PF02978	Signal peptide binding domain
YPD4_2888	PF01578	YPD4_2888
YPD4_2889	PF00571	CBS domain
YPD4_2889	PF01595	YPD4_2889
YPD4_2889	PF03471	Transporter associated domain
YPD4_2890	PF01797	Transposase IS200 like
YPD4_2891	PF02664	S-Ribosylhomocysteinase (LuxS)
YPD4_2892	PF04262	Glutamate-cysteine ligase
YPD4_2894	PF13419	Haloacid dehalogenase-like hydrolase
YPD4_2895	PF01411	tRNA synthetases class II (A)
YPD4_2895	PF02272	DHHA1 domain
YPD4_2895	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
YPD4_2896	PF02631	RecX family
YPD4_2897	PF00154	recA bacterial DNA recombination protein
YPD4_2898	PF02464	Competence-damaged protein
YPD4_2899	PF07690	Major Facilitator Superfamily
YPD4_2900	PF01047	MarR family
YPD4_2900	PF04198	Putative sugar-binding domain
YPD4_2901	PF02952	L-fucose isomerase, C-terminal domain
YPD4_2902	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPD4_2902	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPD4_2903	PF02779	Transketolase, pyrimidine binding domain
YPD4_2903	PF02780	Transketolase, C-terminal domain
YPD4_2904	PF00456	Transketolase, thiamine diphosphate binding domain
YPD4_2905	PF02653	YPD4_2905
YPD4_2906	PF00005	ABC transporter
YPD4_2907	PF10054	Predicted periplasmic lipoprotein (DUF2291)
YPD4_2908	PF13407	Periplasmic binding protein domain
YPD4_2909	PF00141	Peroxidase
YPD4_2910	PF07361	Cytochrome b562
YPD4_2911	PF02613	Nitrate reductase delta subunit
YPD4_2912	PF04976	YPD4_2912
YPD4_2913	PF12800	4Fe-4S binding domain
YPD4_2913	PF13247	4Fe-4S dicluster domain
YPD4_2914	PF00384	Molybdopterin oxidoreductase
YPD4_2914	PF01568	Molydopterin dinucleotide binding domain
YPD4_2914	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YPD4_2915	PF00596	Class II Aldolase and Adducin N-terminal domain
YPD4_2916	PF00455	YPD4_2916
YPD4_2916	PF08220	DeoR-like helix-turn-helix domain
YPD4_2917	PF13407	Periplasmic binding protein domain
YPD4_2918	PF00005	ABC transporter
YPD4_2919	PF02653	YPD4_2919
YPD4_2920	PF02653	YPD4_2920
YPD4_2921	PF01261	Xylose isomerase-like TIM barrel
YPD4_2922	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPD4_2922	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPD4_2923	PF05681	YPD4_2923
YPD4_2923	PF05683	Fumarase C-terminus
YPD4_2924	PF00557	Metallopeptidase family M24
YPD4_2925	PF07906	YPD4_2925
YPD4_2926	PF00593	TonB dependent receptor
YPD4_2927	PF00593	TonB dependent receptor
YPD4_2927	PF07715	TonB-dependent Receptor Plug Domain
YPD4_2930	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPD4_2931	PF01022	Bacterial regulatory protein, arsR family
YPD4_2932	PF02040	YPD4_2932
YPD4_2933	PF04198	Putative sugar-binding domain
YPD4_2933	PF13518	Helix-turn-helix domain
YPD4_2934	PF02734	DAK2 domain
YPD4_2935	PF02733	Dak1 domain
YPD4_2936	PF13561	Enoyl-(Acyl carrier protein) reductase
YPD4_2937	PF00107	Zinc-binding dehydrogenase
YPD4_2937	PF08240	Alcohol dehydrogenase GroES-like domain
YPD4_2938	PF02502	Ribose/Galactose Isomerase
YPD4_2939	PF00488	MutS domain V
YPD4_2939	PF01624	MutS domain I
YPD4_2939	PF05188	MutS domain II
YPD4_2939	PF05190	MutS family domain IV
YPD4_2939	PF05192	MutS domain III
YPD4_2940	PF00140	Sigma-70 factor, region 1
YPD4_2940	PF04539	Sigma-70 region 3
YPD4_2940	PF04542	Sigma-70 region 2
YPD4_2940	PF04545	Sigma-70, region 4
YPD4_2941	PF01476	LysM domain
YPD4_2941	PF01551	Peptidase family M23
YPD4_2942	PF01135	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
YPD4_2943	PF01975	Survival protein SurE
YPD4_2944	PF01142	tRNA pseudouridine synthase D (TruD)
YPD4_2945	PF02542	YgbB family
YPD4_2946	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
YPD4_2947	PF04977	Septum formation initiator
YPD4_2948	PF12084	YPD4_2948
YPD4_2949	PF01583	Adenylylsulphate kinase
YPD4_2950	PF00009	Elongation factor Tu GTP binding domain
YPD4_2951	PF01507	Phosphoadenosine phosphosulfate reductase family
YPD4_2952	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
YPD4_2952	PF10414	Sirohaem synthase dimerisation region
YPD4_2952	PF13241	Putative NAD(P)-binding
YPD4_2952	PF14824	Sirohaem biosynthesis protein central
YPD4_2953	PF15919	YPD4_2953
YPD4_2954	PF01507	Phosphoadenosine phosphosulfate reductase family
YPD4_2955	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
YPD4_2955	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
YPD4_2956	PF00175	Oxidoreductase NAD-binding domain
YPD4_2956	PF00258	Flavodoxin
YPD4_2956	PF00667	FAD binding domain
YPD4_2957	PF01242	6-pyruvoyl tetrahydropterin synthase
YPD4_2958	PF04055	Radical SAM superfamily
YPD4_2958	PF13394	4Fe-4S single cluster domain
YPD4_2959	PF00080	Copper/zinc superoxide dismutase (SODC)
YPD4_2960	PF00113	Enolase, C-terminal TIM barrel domain
YPD4_2960	PF03952	Enolase, N-terminal domain
YPD4_2961	PF00117	Glutamine amidotransferase class-I
YPD4_2961	PF06418	CTP synthase N-terminus
YPD4_2962	PF03819	MazG nucleotide pyrophosphohydrolase domain
YPD4_2963	PF02824	TGS domain
YPD4_2963	PF04607	Region found in RelA / SpoT proteins
YPD4_2963	PF13291	ACT domain
YPD4_2963	PF13328	HD domain
YPD4_2964	PF00072	Response regulator receiver domain
YPD4_2964	PF00512	His Kinase A (phospho-acceptor) domain
YPD4_2964	PF01627	Hpt domain
YPD4_2964	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_2964	PF09984	YPD4_2964
YPD4_2965	PF00595	PDZ domain (Also known as DHR or GLGF)
YPD4_2965	PF13180	PDZ domain
YPD4_2965	PF13365	Trypsin-like peptidase domain
YPD4_2967	PF01966	HD domain
YPD4_2967	PF13286	Phosphohydrolase-associated domain
YPD4_2968	PF01048	Phosphorylase superfamily
YPD4_2969	PF01497	Periplasmic binding protein
YPD4_2970	PF03458	YPD4_2970
YPD4_2971	PF01521	Iron-sulphur cluster biosynthesis
YPD4_2972	PF00654	Voltage gated chloride channel
YPD4_2973	PF00202	Aminotransferase class-III
YPD4_2974	PF01032	FecCD transport family
YPD4_2975	PF01497	Periplasmic binding protein
YPD4_2976	PF00005	ABC transporter
YPD4_2977	PF00905	Penicillin binding protein transpeptidase domain
YPD4_2977	PF00912	Transglycosylase
YPD4_2977	PF14812	YPD4_2977
YPD4_2977	PF14814	Bifunctional transglycosylase second domain
YPD4_2978	PF00270	DEAD/DEAH box helicase
YPD4_2978	PF00271	Helicase conserved C-terminal domain
YPD4_2978	PF04408	Helicase associated domain (HA2)
YPD4_2978	PF08482	YPD4_2978
YPD4_2979	PF02834	LigT like Phosphoesterase
YPD4_2980	PF03749	Sugar fermentation stimulation protein
YPD4_2981	PF01258	Prokaryotic dksA/traR C4-type zinc finger
YPD4_2982	PF00749	tRNA synthetases class I (E and Q), catalytic domain
YPD4_2983	PF01743	Poly A polymerase head domain
YPD4_2983	PF12626	Polymerase A arginine-rich C-terminus
YPD4_2983	PF12627	Probable RNA and SrmB- binding site of polymerase A
YPD4_2984	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
YPD4_2985	PF02548	Ketopantoate hydroxymethyltransferase
YPD4_2986	PF02569	Pantoate-beta-alanine ligase
YPD4_2987	PF02261	Aspartate decarboxylase
YPD4_2988	PF01522	Polysaccharide deacetylase
YPD4_2989	PF01061	YPD4_2989
YPD4_2990	PF00005	ABC transporter
YPD4_2991	PF00484	Carbonic anhydrase
YPD4_2992	PF00156	Phosphoribosyl transferase domain
YPD4_2993	PF00394	Multicopper oxidase
YPD4_2993	PF07731	Multicopper oxidase
YPD4_2993	PF07732	Multicopper oxidase
YPD4_2993	PF10518	TAT (twin-arginine translocation) pathway signal sequence
YPD4_2994	PF09691	Bacterial chaperone lipoprotein (PulS_OutS)
YPD4_2995	PF01564	Spermine/spermidine synthase
YPD4_2995	PF17284	YPD4_2995
YPD4_2996	PF02675	S-adenosylmethionine decarboxylase
YPD4_2997	PF00892	EamA-like transporter family
YPD4_2998	PF06062	YPD4_2998
YPD4_2999	PF00330	Aconitase family (aconitate hydratase)
YPD4_2999	PF06434	Aconitate hydratase 2 N-terminus
YPD4_2999	PF11791	Aconitate B N-terminal domain
YPD4_3000	PF01797	Transposase IS200 like
YPD4_3001	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YPD4_3001	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPD4_3002	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
YPD4_3002	PF00364	Biotin-requiring enzyme
YPD4_3002	PF02817	e3 binding domain
YPD4_3003	PF00456	Transketolase, thiamine diphosphate binding domain
YPD4_3004	PF00392	Bacterial regulatory proteins, gntR family
YPD4_3004	PF07729	FCD domain
YPD4_3005	PF00324	Amino acid permease
YPD4_3006	PF17113	YPD4_3006
YPD4_3007	PF01510	N-acetylmuramoyl-L-alanine amidase
YPD4_3008	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
YPD4_3008	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
YPD4_3009	PF07963	Prokaryotic N-terminal methylation motif
YPD4_3010	PF00437	Type II/IV secretion system protein
YPD4_3011	PF00482	Type II secretion system (T2SS), protein F
YPD4_3012	PF00478	IMP dehydrogenase / GMP reductase domain
YPD4_3013	PF01121	Dephospho-CoA kinase
YPD4_3014	PF07072	Protein of unknown function (DUF1342)
YPD4_3015	PF01797	Transposase IS200 like
YPD4_3016	PF00665	Integrase core domain
YPD4_3016	PF02796	Helix-turn-helix domain of resolvase
YPD4_3017	PF01695	IstB-like ATP binding protein
YPD4_3018	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_3019	PF03235	YPD4_3019
YPD4_3019	PF07510	YPD4_3019
YPD4_3020	PF00589	Phage integrase family
YPD4_3020	PF13356	Domain of unknown function (DUF4102)
YPD4_3021	PF03739	YPD4_3021
YPD4_3022	PF03739	YPD4_3022
YPD4_3023	PF03739	YPD4_3023
YPD4_3024	PF00883	Cytosol aminopeptidase family, catalytic domain
YPD4_3024	PF02789	Cytosol aminopeptidase family, N-terminal domain
YPD4_3025	PF04364	DNA polymerase III chi subunit, HolC
YPD4_3026	PF00133	tRNA synthetases class I (I, L, M and V)
YPD4_3026	PF08264	Anticodon-binding domain of tRNA
YPD4_3026	PF10458	Valyl tRNA synthetase tRNA binding arm
YPD4_3027	PF00583	Acetyltransferase (GNAT) family
YPD4_3028	PF06877	Regulator of ribonuclease activity B
YPD4_3029	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
YPD4_3029	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
YPD4_3030	PF04074	Domain of unknown function (DUF386)
YPD4_3031	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPD4_3033	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_3034	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_3034	PF12911	YPD4_3034
YPD4_3035	PF00005	ABC transporter
YPD4_3036	PF00005	ABC transporter
YPD4_3037	PF03477	ATP cone domain
YPD4_3037	PF13597	Anaerobic ribonucleoside-triphosphate reductase
YPD4_3038	PF13353	4Fe-4S single cluster domain
YPD4_3039	PF00392	Bacterial regulatory proteins, gntR family
YPD4_3039	PF07702	UTRA domain
YPD4_3040	PF06754	YPD4_3040
YPD4_3041	PF05845	Bacterial phosphonate metabolism protein (PhnH)
YPD4_3042	PF05861	YPD4_3042
YPD4_3043	PF06007	YPD4_3043
YPD4_3044	PF00005	ABC transporter
YPD4_3045	PF00005	ABC transporter
YPD4_3046	PF07969	Amidohydrolase family
YPD4_3047	PF13238	AAA domain
YPD4_3048	PF12706	Beta-lactamase superfamily domain
YPD4_3051	PF05426	Alginate lyase
YPD4_3052	PF00005	ABC transporter
YPD4_3052	PF08402	TOBE domain
YPD4_3053	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_3054	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_3055	PF01547	Bacterial extracellular solute-binding protein
YPD4_3056	PF05426	Alginate lyase
YPD4_3057	PF05426	Alginate lyase
YPD4_3057	PF07940	Heparinase II/III-like protein
YPD4_3058	PF00583	Acetyltransferase (GNAT) family
YPD4_3059	PF02036	SCP-2 sterol transfer family
YPD4_3060	PF01136	YPD4_3060
YPD4_3061	PF01136	YPD4_3061
YPD4_3062	PF02321	Outer membrane efflux protein
YPD4_3063	PF00873	AcrB/AcrD/AcrF family
YPD4_3064	PF16576	YPD4_3064
YPD4_3065	PF00296	Luciferase-like monooxygenase
YPD4_3066	PF01381	Helix-turn-helix
YPD4_3067	PF00270	DEAD/DEAH box helicase
YPD4_3067	PF00271	Helicase conserved C-terminal domain
YPD4_3067	PF03880	DbpA RNA binding domain
YPD4_3067	PF12343	YPD4_3067
YPD4_3068	PF07719	Tetratricopeptide repeat
YPD4_3068	PF13181	Tetratricopeptide repeat
YPD4_3069	PF00013	KH domain
YPD4_3069	PF00575	S1 RNA binding domain
YPD4_3069	PF01138	3' exoribonuclease family, domain 1
YPD4_3069	PF03725	3' exoribonuclease family, domain 2
YPD4_3069	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
YPD4_3070	PF00665	Integrase core domain
YPD4_3070	PF13276	YPD4_3070
YPD4_3071	PF13518	Helix-turn-helix domain
YPD4_3072	PF05947	YPD4_3072
YPD4_3073	PF06996	YPD4_3073
YPD4_3075	PF12790	Type VI secretion lipoprotein
YPD4_3076	PF05936	YPD4_3076
YPD4_3077	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
YPD4_3078	PF00004	ATPase family associated with various cellular activities (AAA)
YPD4_3078	PF07724	AAA domain (Cdc48 subfamily)
YPD4_3078	PF10431	C-terminal, D2-small domain, of ClpB protein
YPD4_3079	PF02954	Bacterial regulatory protein, Fis family
YPD4_3080	PF11319	YPD4_3080
YPD4_3081	PF06812	YPD4_3081
YPD4_3081	PF16989	YPD4_3081
YPD4_3082	PF06744	YPD4_3082
YPD4_3082	PF06761	YPD4_3082
YPD4_3082	PF14331	YPD4_3082
YPD4_3083	PF06812	YPD4_3083
YPD4_3084	PF12486	YPD4_3084
YPD4_3085	PF05954	Phage late control gene D protein (GPD)
YPD4_3086	PF08786	Domain of unknown function (DUF1795)
YPD4_3087	PF05488	PAAR motif
YPD4_3087	PF05593	YPD4_3087
YPD4_3088	PF03527	YPD4_3088
YPD4_3088	PF14414	YPD4_3088
YPD4_3089	PF09346	SMI1 / KNR4 family (SUKH-1)
YPD4_3090	PF01381	Helix-turn-helix
YPD4_3091	PF05954	Phage late control gene D protein (GPD)
YPD4_3092	PF08786	Domain of unknown function (DUF1795)
YPD4_3093	PF03527	YPD4_3093
YPD4_3093	PF05488	PAAR motif
YPD4_3093	PF05593	YPD4_3093
YPD4_3095	PF01261	Xylose isomerase-like TIM barrel
YPD4_3096	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPD4_3097	PF02311	AraC-like ligand binding domain
YPD4_3097	PF12833	Helix-turn-helix domain
YPD4_3098	PF05025	RbsD / FucU transport protein family
YPD4_3099	PF00294	pfkB family carbohydrate kinase
YPD4_3100	PF01791	DeoC/LacD family aldolase
YPD4_3101	PF03358	NADPH-dependent FMN reductase
YPD4_3102	PF09084	NMT1/THI5 like
YPD4_3103	PF00296	Luciferase-like monooxygenase
YPD4_3104	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_3105	PF00005	ABC transporter
YPD4_3106	PF00860	Permease family
YPD4_3107	PF00999	Sodium/hydrogen exchanger family
YPD4_3109	PF03279	YPD4_3109
YPD4_3110	PF13407	Periplasmic binding protein domain
YPD4_3111	PF00005	ABC transporter
YPD4_3112	PF02653	YPD4_3112
YPD4_3113	PF02653	YPD4_3113
YPD4_3114	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPD4_3114	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPD4_3115	PF01380	SIS domain
YPD4_3116	PF02798	Glutathione S-transferase, N-terminal domain
YPD4_3116	PF13410	Glutathione S-transferase, C-terminal domain
YPD4_3117	PF13449	Esterase-like activity of phytase
YPD4_3119	PF01797	Transposase IS200 like
YPD4_3120	PF05433	YPD4_3120
YPD4_3121	PF00753	Metallo-beta-lactamase superfamily
YPD4_3122	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
YPD4_3122	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
YPD4_3123	PF02627	Carboxymuconolactone decarboxylase family
YPD4_3124	PF07690	Major Facilitator Superfamily
YPD4_3125	PF07690	Major Facilitator Superfamily
YPD4_3126	PF00392	Bacterial regulatory proteins, gntR family
YPD4_3126	PF07729	FCD domain
YPD4_3128	PF01207	Dihydrouridine synthase (Dus)
YPD4_3129	PF06325	Ribosomal protein L11 methyltransferase (PrmA)
YPD4_3130	PF00474	Sodium:solute symporter family
YPD4_3131	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
YPD4_3131	PF02785	Biotin carboxylase C-terminal domain
YPD4_3131	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
YPD4_3132	PF00364	Biotin-requiring enzyme
YPD4_3133	PF01220	Dehydroquinase class II
YPD4_3134	PF01794	YPD4_3134
YPD4_3135	PF00174	Oxidoreductase molybdopterin binding domain
YPD4_3136	PF00107	Zinc-binding dehydrogenase
YPD4_3136	PF08240	Alcohol dehydrogenase GroES-like domain
YPD4_3137	PF00563	EAL domain
YPD4_3137	PF00990	GGDEF domain
YPD4_3137	PF17157	YPD4_3137
YPD4_3138	PF06723	MreB/Mbl protein
YPD4_3139	PF04085	rod shape-determining protein MreC
YPD4_3140	PF04093	YPD4_3140
YPD4_3141	PF02545	Maf-like protein
YPD4_3142	PF00575	S1 RNA binding domain
YPD4_3142	PF10150	Ribonuclease E/G family
YPD4_3143	PF13116	YPD4_3143
YPD4_3143	PF13502	YPD4_3143
YPD4_3144	PF00795	Carbon-nitrogen hydrolase
YPD4_3145	PF01523	Putative modulator of DNA gyrase
YPD4_3147	PF00782	Dual specificity phosphatase, catalytic domain
YPD4_3148	PF10828	YPD4_3148
YPD4_3149	PF13539	D-alanyl-D-alanine carboxypeptidase
YPD4_3150	PF16083	YPD4_3150
YPD4_3151	PF03534	Salmonella virulence plasmid 65kDa B protein
YPD4_3151	PF12255	Insecticide toxin TcdB middle/C-terminal region
YPD4_3151	PF12256	Insecticide toxin TcdB middle/N-terminal region
YPD4_3154	PF03538	Salmonella virulence plasmid 28
YPD4_3155	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_3156	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_3156	PF03466	LysR substrate binding domain
YPD4_3157	PF13437	HlyD family secretion protein
YPD4_3157	PF13533	Biotin-lipoyl like
YPD4_3158	PF04632	YPD4_3158
YPD4_3159	PF00171	Aldehyde dehydrogenase family
YPD4_3160	PF00171	Aldehyde dehydrogenase family
YPD4_3161	PF00545	ribonuclease
YPD4_3162	PF04751	Protein of unknown function (DUF615)
YPD4_3163	PF01523	Putative modulator of DNA gyrase
YPD4_3165	PF07361	Cytochrome b562
YPD4_3166	PF01272	Transcription elongation factor, GreA/GreB, C-term
YPD4_3166	PF14760	Rnk N-terminus
YPD4_3167	PF00128	Alpha amylase, catalytic domain
YPD4_3167	PF11941	Domain of unknown function (DUF3459)
YPD4_3168	PF00367	phosphotransferase system, EIIB
YPD4_3168	PF02378	Phosphotransferase system, EIIC
YPD4_3169	PF00356	Bacterial regulatory proteins, lacI family
YPD4_3169	PF13377	Periplasmic binding protein-like domain
YPD4_3170	PF16743	YPD4_3170
YPD4_3171	PF01042	Endoribonuclease L-PSP
YPD4_3172	PF01948	Aspartate carbamoyltransferase regulatory chain, allosteric domain
YPD4_3172	PF02748	Aspartate carbamoyltransferase regulatory chain, metal binding domain
YPD4_3173	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
YPD4_3173	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
YPD4_3174	PF03668	YPD4_3174
YPD4_3175	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YPD4_3176	PF00309	YPD4_3176
YPD4_3176	PF04552	Sigma-54, DNA binding domain
YPD4_3176	PF04963	Sigma-54 factor, core binding domain
YPD4_3177	PF00005	ABC transporter
YPD4_3177	PF12399	Branched-chain amino acid ATP-binding cassette transporter
YPD4_3178	PF03968	OstA-like protein
YPD4_3179	PF06835	Lipopolysaccharide-assembly, LptC-related
YPD4_3180	PF08282	haloacid dehalogenase-like hydrolase
YPD4_3181	PF00571	CBS domain
YPD4_3181	PF01380	SIS domain
YPD4_3182	PF01699	Sodium/calcium exchanger protein
YPD4_3183	PF00005	ABC transporter
YPD4_3184	PF02405	YPD4_3184
YPD4_3185	PF02470	YPD4_3185
YPD4_3186	PF05494	Toluene tolerance, Ttg2
YPD4_3187	PF13466	STAS domain
YPD4_3188	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
YPD4_3189	PF13180	PDZ domain
YPD4_3189	PF13365	Trypsin-like peptidase domain
YPD4_3190	PF01797	Transposase IS200 like
YPD4_3191	PF00595	PDZ domain (Also known as DHR or GLGF)
YPD4_3191	PF13180	PDZ domain
YPD4_3191	PF13365	Trypsin-like peptidase domain
YPD4_3192	PF06295	YPD4_3192
YPD4_3193	PF03969	AFG1-like ATPase
YPD4_3194	PF00572	Ribosomal protein L13
YPD4_3195	PF00380	Ribosomal protein S9/S16
YPD4_3196	PF00043	Glutathione S-transferase, C-terminal domain
YPD4_3196	PF02798	Glutathione S-transferase, N-terminal domain
YPD4_3197	PF04386	Stringent starvation protein B
YPD4_3199	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPD4_3199	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
YPD4_3200	PF00310	Glutamine amidotransferases class-II
YPD4_3200	PF01493	GXGXG motif
YPD4_3200	PF01645	Conserved region in glutamate synthase
YPD4_3200	PF04898	Glutamate synthase central domain
YPD4_3201	PF04055	Radical SAM superfamily
YPD4_3201	PF16199	YPD4_3201
YPD4_3202	PF00072	Response regulator receiver domain
YPD4_3202	PF00512	His Kinase A (phospho-acceptor) domain
YPD4_3202	PF00989	PAS fold
YPD4_3202	PF01627	Hpt domain
YPD4_3202	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_3204	PF00912	Transglycosylase
YPD4_3205	PF04972	BON domain
YPD4_3206	PF13580	SIS domain
YPD4_3207	PF02021	Uncharacterised protein family UPF0102
YPD4_3208	PF04348	LppC putative lipoprotein
YPD4_3209	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
YPD4_3210	PF02678	Pirin
YPD4_3211	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_3211	PF03466	LysR substrate binding domain
YPD4_3212	PF13409	Glutathione S-transferase, N-terminal domain
YPD4_3212	PF13410	Glutathione S-transferase, C-terminal domain
YPD4_3213	PF01695	IstB-like ATP binding protein
YPD4_3214	PF01695	IstB-like ATP binding protein
YPD4_3215	PF00665	Integrase core domain
YPD4_3215	PF02796	Helix-turn-helix domain of resolvase
YPD4_3216	PF00326	Prolyl oligopeptidase family
YPD4_3217	PF01250	Ribosomal protein S6
YPD4_3218	PF01281	Ribosomal protein L9, N-terminal domain
YPD4_3218	PF03948	Ribosomal protein L9, C-terminal domain
YPD4_3219	PF01797	Transposase IS200 like
YPD4_3220	PF12582	YPD4_3220
YPD4_3221	PF08525	YPD4_3221
YPD4_3222	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
YPD4_3222	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
YPD4_3223	PF01814	Hemerythrin HHE cation binding domain
YPD4_3223	PF04405	YPD4_3223
YPD4_3224	PF02872	5'-nucleotidase, C-terminal domain
YPD4_3225	PF00149	Calcineurin-like phosphoesterase
YPD4_3226	PF00459	Inositol monophosphatase family
YPD4_3227	PF09695	YPD4_3227
YPD4_3228	PF00571	CBS domain
YPD4_3228	PF01595	YPD4_3228
YPD4_3228	PF03471	Transporter associated domain
YPD4_3229	PF01625	Peptide methionine sulfoxide reductase
YPD4_3230	PF01103	Surface antigen
YPD4_3230	PF07244	Surface antigen variable number repeat
YPD4_3230	PF17243	YPD4_3230
YPD4_3231	PF04357	YPD4_3231
YPD4_3232	PF06094	AIG2-like family
YPD4_3233	PF00719	Inorganic pyrophosphatase
YPD4_3234	PF00316	Fructose-1-6-bisphosphatase
YPD4_3235	PF01225	Mur ligase family, catalytic domain
YPD4_3235	PF02875	Mur ligase family, glutamate ligase domain
YPD4_3235	PF08245	Mur ligase middle domain
YPD4_3236	PF01316	Arginine repressor, DNA binding domain
YPD4_3236	PF02863	Arginine repressor, C-terminal domain
YPD4_3237	PF00056	lactate/malate dehydrogenase, NAD binding domain
YPD4_3237	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
YPD4_3238	PF02316	Mu DNA-binding domain
YPD4_3239	PF00348	Polyprenyl synthetase
YPD4_3240	PF00829	Ribosomal prokaryotic L21 protein
YPD4_3241	PF00892	EamA-like transporter family
YPD4_3242	PF01018	GTP1/OBG
YPD4_3242	PF01926	50S ribosome-binding GTPase
YPD4_3243	PF00512	His Kinase A (phospho-acceptor) domain
YPD4_3243	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_3244	PF00072	Response regulator receiver domain
YPD4_3244	PF00486	Transcriptional regulatory protein, C terminal
YPD4_3245	PF02113	D-Ala-D-Ala carboxypeptidase 3 (S13) family
YPD4_3246	PF01272	Transcription elongation factor, GreA/GreB, C-term
YPD4_3246	PF03449	Transcription elongation factor, N-terminal
YPD4_3247	PF01985	CRS1 / YhbY (CRM) domain
YPD4_3248	PF01728	FtsJ-like methyltransferase
YPD4_3249	PF00004	ATPase family associated with various cellular activities (AAA)
YPD4_3249	PF01434	Peptidase family M41
YPD4_3250	PF00809	Pterin binding enzyme
YPD4_3251	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
YPD4_3251	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YPD4_3251	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
YPD4_3251	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
YPD4_3252	PF02576	Uncharacterised BCR, YhbC family COG0779
YPD4_3252	PF17384	YPD4_3252
YPD4_3253	PF08529	NusA N-terminal domain
YPD4_3253	PF13184	NusA-like KH domain
YPD4_3253	PF14520	Helix-hairpin-helix domain
YPD4_3254	PF00009	Elongation factor Tu GTP binding domain
YPD4_3254	PF03144	Elongation factor Tu domain 2
YPD4_3254	PF04760	Translation initiation factor IF-2, N-terminal region
YPD4_3254	PF08364	YPD4_3254
YPD4_3254	PF11987	Translation-initiation factor 2
YPD4_3255	PF02033	Ribosome-binding factor A
YPD4_3256	PF01509	TruB family pseudouridylate synthase (N terminal domain)
YPD4_3256	PF09157	Pseudouridine synthase II TruB, C-terminal
YPD4_3256	PF16198	YPD4_3256
YPD4_3257	PF13518	Helix-turn-helix domain
YPD4_3258	PF00665	Integrase core domain
YPD4_3258	PF13276	YPD4_3258
YPD4_3259	PF04965	Gene 25-like lysozyme
YPD4_3260	PF05943	YPD4_3260
YPD4_3261	PF05591	YPD4_3261
YPD4_3262	PF05638	Protein of unknown function (DUF796)
YPD4_3263	PF07148	YPD4_3263
YPD4_3264	PF02264	LamB porin
YPD4_3265	PF00005	ABC transporter
YPD4_3265	PF08402	TOBE domain
YPD4_3266	PF13416	Bacterial extracellular solute-binding protein
YPD4_3267	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_3267	PF14785	Maltose transport system permease protein MalF P2 domain
YPD4_3268	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_3269	PF06146	YPD4_3269
YPD4_3270	PF00342	Phosphoglucose isomerase
YPD4_3271	PF00696	Amino acid kinase family
YPD4_3273	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YPD4_3273	PF08479	POTRA domain, ShlB-type
YPD4_3273	PF17287	YPD4_3273
YPD4_3274	PF05860	haemagglutination activity domain
YPD4_3274	PF13332	YPD4_3274
YPD4_3275	PF00809	Pterin binding enzyme
YPD4_3275	PF02310	B12 binding domain
YPD4_3275	PF02574	Homocysteine S-methyltransferase
YPD4_3275	PF02607	B12 binding domain
YPD4_3275	PF02965	Vitamin B12 dependent methionine synthase, activation domain
YPD4_3276	PF09339	IclR helix-turn-helix domain
YPD4_3277	PF01614	Bacterial transcriptional regulator
YPD4_3278	PF06315	Isocitrate dehydrogenase kinase/phosphatase (AceK)
YPD4_3279	PF00463	Isocitrate lyase family
YPD4_3280	PF01274	Malate synthase
YPD4_3281	PF04204	Homoserine O-succinyltransferase
YPD4_3282	PF01808	AICARFT/IMPCHase bienzyme
YPD4_3283	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
YPD4_3283	PF02843	Phosphoribosylglycinamide synthetase, C domain
YPD4_3283	PF02844	Phosphoribosylglycinamide synthetase, N domain
YPD4_3284	PF07356	YPD4_3284
YPD4_3285	PF04222	Protein of unknown function (DUF416)
YPD4_3286	PF04493	Endonuclease V
YPD4_3287	PF01208	Uroporphyrinogen decarboxylase (URO-D)
YPD4_3289	PF00293	NUDIX domain
YPD4_3289	PF09297	NADH pyrophosphatase zinc ribbon domain
YPD4_3290	PF04353	Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
YPD4_3291	PF01964	ThiC family
YPD4_3291	PF13667	ThiC-associated domain
YPD4_3292	PF02581	Thiamine monophosphate synthase/TENI
YPD4_3293	PF00899	ThiF family
YPD4_3294	PF05690	Thiazole biosynthesis protein ThiG
YPD4_3295	PF04055	Radical SAM superfamily
YPD4_3295	PF06968	Biotin and Thiamin Synthesis associated domain
YPD4_3296	PF01797	Transposase IS200 like
YPD4_3297	PF00623	RNA polymerase Rpb1, domain 2
YPD4_3297	PF04983	RNA polymerase Rpb1, domain 3
YPD4_3297	PF04997	RNA polymerase Rpb1, domain 1
YPD4_3297	PF04998	RNA polymerase Rpb1, domain 5
YPD4_3297	PF05000	RNA polymerase Rpb1, domain 4
YPD4_3298	PF00562	RNA polymerase Rpb2, domain 6
YPD4_3298	PF04560	RNA polymerase Rpb2, domain 7
YPD4_3298	PF04561	RNA polymerase Rpb2, domain 2
YPD4_3298	PF04563	RNA polymerase beta subunit
YPD4_3298	PF04565	RNA polymerase Rpb2, domain 3
YPD4_3298	PF10385	RNA polymerase beta subunit external 1 domain
YPD4_3299	PF00542	Ribosomal protein L7/L12 C-terminal domain
YPD4_3299	PF16320	YPD4_3299
YPD4_3300	PF00466	Ribosomal protein L10
YPD4_3301	PF00687	Ribosomal protein L1p/L10e family
YPD4_3302	PF00298	Ribosomal protein L11, RNA binding domain
YPD4_3302	PF03946	Ribosomal protein L11, N-terminal domain
YPD4_3303	PF00467	KOW motif
YPD4_3303	PF02357	Transcription termination factor nusG
YPD4_3304	PF00009	Elongation factor Tu GTP binding domain
YPD4_3304	PF03143	Elongation factor Tu C-terminal domain
YPD4_3304	PF03144	Elongation factor Tu domain 2
YPD4_3305	PF01695	IstB-like ATP binding protein
YPD4_3306	PF00665	Integrase core domain
YPD4_3306	PF02796	Helix-turn-helix domain of resolvase
YPD4_3307	PF13673	Acetyltransferase (GNAT) domain
YPD4_3308	PF00485	Phosphoribulokinase / Uridine kinase family
YPD4_3309	PF02237	Biotin protein ligase C terminal domain
YPD4_3309	PF03099	Biotin/lipoate A/B protein ligase family
YPD4_3309	PF08279	HTH domain
YPD4_3310	PF01565	FAD binding domain
YPD4_3310	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
YPD4_3311	PF02386	Cation transport protein
YPD4_3312	PF01205	Uncharacterized protein family UPF0029
YPD4_3312	PF09186	Domain of unknown function (DUF1949)
YPD4_3313	PF01797	Transposase IS200 like
YPD4_3314	PF00557	Metallopeptidase family M24
YPD4_3315	PF00378	Enoyl-CoA hydratase/isomerase family
YPD4_3315	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
YPD4_3315	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
YPD4_3316	PF00108	Thiolase, N-terminal domain
YPD4_3316	PF02803	Thiolase, C-terminal domain
YPD4_3317	PF00175	Oxidoreductase NAD-binding domain
YPD4_3317	PF00970	Oxidoreductase FAD-binding domain
YPD4_3318	PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
YPD4_3319	PF02357	Transcription termination factor nusG
YPD4_3320	PF00490	Delta-aminolevulinic acid dehydratase
YPD4_3321	PF01026	TatD related DNase
YPD4_3322	PF01695	IstB-like ATP binding protein
YPD4_3323	PF00665	Integrase core domain
YPD4_3323	PF02796	Helix-turn-helix domain of resolvase
YPD4_3324	PF01026	TatD related DNase
YPD4_3325	PF00902	Sec-independent protein translocase protein (TatC)
YPD4_3327	PF03109	YPD4_3327
YPD4_3328	PF02036	SCP-2 sterol transfer family
YPD4_3329	PF01209	ubiE/COQ5 methyltransferase family
YPD4_3330	PF02646	YPD4_3330
YPD4_3331	PF09335	YPD4_3331
YPD4_3332	PF02554	YPD4_3332
YPD4_3332	PF13722	YPD4_3332
YPD4_3333	PF13350	Tyrosine phosphatase family
YPD4_3334	PF01048	Phosphorylase superfamily
YPD4_3335	PF01738	Dienelactone hydrolase family
YPD4_3336	PF01717	Cobalamin-independent synthase, Catalytic domain
YPD4_3336	PF08267	Cobalamin-independent synthase, N-terminal domain
YPD4_3337	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_3337	PF03466	LysR substrate binding domain
YPD4_3338	PF03547	YPD4_3338
YPD4_3339	PF03009	Glycerophosphoryl diester phosphodiesterase family
YPD4_3340	PF00005	ABC transporter
YPD4_3340	PF08402	TOBE domain
YPD4_3341	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_3342	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_3343	PF13416	Bacterial extracellular solute-binding protein
YPD4_3344	PF04449	CS1 type fimbrial major subunit
YPD4_3345	PF16967	YPD4_3345
YPD4_3351	PF00005	ABC transporter
YPD4_3352	PF00005	ABC transporter
YPD4_3352	PF12399	Branched-chain amino acid ATP-binding cassette transporter
YPD4_3353	PF02653	YPD4_3353
YPD4_3353	PF11862	YPD4_3353
YPD4_3354	PF02653	YPD4_3354
YPD4_3355	PF13458	Periplasmic binding protein
YPD4_3356	PF12568	Acetyltransferase (GNAT) domain
YPD4_3357	PF01797	Transposase IS200 like
YPD4_3358	PF00140	Sigma-70 factor, region 1
YPD4_3358	PF04542	Sigma-70 region 2
YPD4_3358	PF04545	Sigma-70, region 4
YPD4_3359	PF02687	YPD4_3359
YPD4_3360	PF00005	ABC transporter
YPD4_3361	PF00448	SRP54-type protein, GTPase domain
YPD4_3361	PF02881	SRP54-type protein, helical bundle domain
YPD4_3362	PF03602	Conserved hypothetical protein 95
YPD4_3363	PF10694	Protein of unknown function (DUF2500)
YPD4_3364	PF08850	YPD4_3364
YPD4_3365	PF07947	YPD4_3365
YPD4_3366	PF00122	E1-E2 ATPase
YPD4_3366	PF00403	Heavy-metal-associated domain
YPD4_3366	PF00702	haloacid dehalogenase-like hydrolase
YPD4_3367	PF01206	Sulfurtransferase TusA
YPD4_3368	PF02592	YPD4_3368
YPD4_3369	PF08786	Domain of unknown function (DUF1795)
YPD4_3370	PF02754	YPD4_3370
YPD4_3370	PF13183	4Fe-4S dicluster domain
YPD4_3371	PF00890	FAD binding domain
YPD4_3372	PF01266	FAD dependent oxidoreductase
YPD4_3372	PF04324	BFD-like [2Fe-2S] binding domain
YPD4_3373	PF03009	Glycerophosphoryl diester phosphodiesterase family
YPD4_3374	PF03272	YPD4_3374
YPD4_3375	PF08282	haloacid dehalogenase-like hydrolase
YPD4_3376	PF12146	Putative lysophospholipase
YPD4_3377	PF01810	YPD4_3377
YPD4_3378	PF01810	YPD4_3378
YPD4_3379	PF00270	DEAD/DEAH box helicase
YPD4_3379	PF00271	Helicase conserved C-terminal domain
YPD4_3379	PF00570	HRDC domain
YPD4_3379	PF09382	RQC domain
YPD4_3379	PF16124	YPD4_3379
YPD4_3380	PF02253	Phospholipase A1
YPD4_3381	PF03061	Thioesterase superfamily
YPD4_3382	PF00892	EamA-like transporter family
YPD4_3383	PF01544	CorA-like Mg2+ transporter protein
YPD4_3384	PF09370	TIM-barrel signal transduction protein
YPD4_3385	PF06792	Uncharacterised protein family (UPF0261)
YPD4_3386	PF06792	Uncharacterised protein family (UPF0261)
YPD4_3387	PF00440	Bacterial regulatory proteins, tetR family
YPD4_3388	PF00580	UvrD/REP helicase N-terminal domain
YPD4_3388	PF13361	UvrD-like helicase C-terminal domain
YPD4_3389	PF00702	haloacid dehalogenase-like hydrolase
YPD4_3390	PF00589	Phage integrase family
YPD4_3390	PF02899	Phage integrase, N-terminal SAM-like domain
YPD4_3391	PF04340	Protein of unknown function, DUF484
YPD4_3392	PF01678	Diaminopimelate epimerase
YPD4_3393	PF01491	Frataxin-like domain
YPD4_3394	PF01295	YPD4_3394
YPD4_3394	PF12633	YPD4_3394
YPD4_3395	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
YPD4_3395	PF03900	Porphobilinogen deaminase, C-terminal domain
YPD4_3396	PF02602	Uroporphyrinogen-III synthase HemD
YPD4_3397	PF04375	YPD4_3397
YPD4_3398	PF07219	YPD4_3398
YPD4_3399	PF01797	Transposase IS200 like
YPD4_3400	PF00324	Amino acid permease
YPD4_3401	PF03808	YPD4_3401
YPD4_3402	PF06899	YPD4_3402
YPD4_3403	PF07429	YPD4_3403
YPD4_3404	PF01943	YPD4_3404
YPD4_3405	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
YPD4_3406	PF00583	Acetyltransferase (GNAT) family
YPD4_3407	PF00483	Nucleotidyl transferase
YPD4_3408	PF16363	YPD4_3408
YPD4_3409	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
YPD4_3409	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
YPD4_3409	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
YPD4_3410	PF02350	UDP-N-acetylglucosamine 2-epimerase
YPD4_3411	PF02706	Chain length determinant protein
YPD4_3412	PF00953	Glycosyl transferase family 4
YPD4_3413	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPD4_3413	PF07497	Rho termination factor, RNA-binding domain
YPD4_3413	PF07498	Rho termination factor, N-terminal domain
YPD4_3414	PF00085	Thioredoxin
YPD4_3415	PF00270	DEAD/DEAH box helicase
YPD4_3415	PF00271	Helicase conserved C-terminal domain
YPD4_3416	PF02541	Ppx/GppA phosphatase family
YPD4_3417	PF00580	UvrD/REP helicase N-terminal domain
YPD4_3417	PF13361	UvrD-like helicase C-terminal domain
YPD4_3418	PF05096	Glutamine cyclotransferase
YPD4_3419	PF00872	YPD4_3419
YPD4_3420	PF16970	YPD4_3420
YPD4_3421	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPD4_3421	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPD4_3422	PF00577	Outer membrane usher protein
YPD4_3422	PF13953	PapC C-terminal domain
YPD4_3422	PF13954	PapC N-terminal domain
YPD4_3423	PF00419	Fimbrial protein
YPD4_3424	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPD4_3424	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPD4_3425	PF06958	S-type Pyocin
YPD4_3426	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
YPD4_3426	PF07991	Acetohydroxy acid isomeroreductase, catalytic domain
YPD4_3427	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_3427	PF03466	LysR substrate binding domain
YPD4_3428	PF11692	YPD4_3428
YPD4_3429	PF06092	YPD4_3429
YPD4_3430	PF06092	YPD4_3430
YPD4_3431	PF06092	YPD4_3431
YPD4_3432	PF00291	Pyridoxal-phosphate dependent enzyme
YPD4_3432	PF00585	C-terminal regulatory domain of Threonine dehydratase
YPD4_3433	PF00920	Dehydratase family
YPD4_3434	PF01063	Aminotransferase class IV
YPD4_3435	PF00205	Thiamine pyrophosphate enzyme, central domain
YPD4_3435	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPD4_3435	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YPD4_3436	PF01078	Magnesium chelatase, subunit ChlI
YPD4_3436	PF13335	YPD4_3436
YPD4_3436	PF13541	Subunit ChlI of Mg-chelatase
YPD4_3437	PF04219	YPD4_3437
YPD4_3438	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_3438	PF03466	LysR substrate binding domain
YPD4_3439	PF02653	YPD4_3439
YPD4_3440	PF02653	YPD4_3440
YPD4_3441	PF00005	ABC transporter
YPD4_3442	PF13407	Periplasmic binding protein domain
YPD4_3443	PF01177	Asp/Glu/Hydantoin racemase
YPD4_3444	PF00593	TonB dependent receptor
YPD4_3444	PF07715	TonB-dependent Receptor Plug Domain
YPD4_3445	PF05958	tRNA (Uracil-5-)-methyltransferase
YPD4_3446	PF07226	YPD4_3446
YPD4_3447	PF00440	Bacterial regulatory proteins, tetR family
YPD4_3448	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YPD4_3448	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPD4_3449	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPD4_3449	PF03466	LysR substrate binding domain
YPD4_3450	PF00462	Glutaredoxin
YPD4_3450	PF08534	Redoxin
YPD4_3451	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YPD4_3451	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPD4_3452	PF03544	Gram-negative bacterial TonB protein C-terminal
YPD4_3453	PF13437	HlyD family secretion protein
YPD4_3453	PF13533	Biotin-lipoyl like
YPD4_3454	PF00005	ABC transporter
YPD4_3454	PF00664	ABC transporter transmembrane region
YPD4_3455	PF06438	Heme-binding protein A (HasA)
YPD4_3456	PF00593	TonB dependent receptor
YPD4_3456	PF07715	TonB-dependent Receptor Plug Domain
YPD4_3457	PF00206	Lyase
YPD4_3457	PF14698	Argininosuccinate lyase C-terminal
YPD4_3458	PF00696	Amino acid kinase family
YPD4_3459	PF01118	Semialdehyde dehydrogenase, NAD binding domain
YPD4_3459	PF02774	Semialdehyde dehydrogenase, dimerisation domain
YPD4_3460	PF01546	Peptidase family M20/M25/M40
YPD4_3460	PF07687	Peptidase dimerisation domain
YPD4_3461	PF00311	Phosphoenolpyruvate carboxylase
YPD4_3462	PF13518	Helix-turn-helix domain
YPD4_3463	PF00665	Integrase core domain
YPD4_3463	PF13276	YPD4_3463
YPD4_3464	PF06092	YPD4_3464
YPD4_3465	PF01266	FAD dependent oxidoreductase
YPD4_3465	PF16901	YPD4_3465
YPD4_3466	PF00343	Carbohydrate phosphorylase
YPD4_3467	PF00534	Glycosyl transferases group 1
YPD4_3467	PF08323	Starch synthase catalytic domain
YPD4_3468	PF00483	Nucleotidyl transferase
YPD4_3469	PF00128	Alpha amylase, catalytic domain
YPD4_3469	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
YPD4_3470	PF00128	Alpha amylase, catalytic domain
YPD4_3470	PF02806	Alpha amylase, C-terminal all-beta domain
YPD4_3470	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
YPD4_3471	PF06580	YPD4_3471
YPD4_3471	PF07694	5TMR of 5TMR-LYT
YPD4_3472	PF01476	LysM domain
YPD4_3472	PF02369	Bacterial Ig-like domain (group 1)
YPD4_3472	PF11924	Protein of unknown function (DUF3442)
YPD4_3473	PF01118	Semialdehyde dehydrogenase, NAD binding domain
YPD4_3473	PF02774	Semialdehyde dehydrogenase, dimerisation domain
YPD4_3474	PF01914	YPD4_3474
YPD4_3476	PF01202	Shikimate kinase
YPD4_3477	PF02447	YPD4_3477
YPD4_3478	PF00356	Bacterial regulatory proteins, lacI family
YPD4_3478	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YPD4_3479	PF02678	Pirin
YPD4_3480	PF00072	Response regulator receiver domain
YPD4_3480	PF00486	Transcriptional regulatory protein, C terminal
YPD4_3481	PF00294	pfkB family carbohydrate kinase
YPD4_3482	PF01116	Fructose-bisphosphate aldolase class-II
YPD4_3483	PF07385	Protein of unknown function (DUF1498)
YPD4_3484	PF13407	Periplasmic binding protein domain
YPD4_3485	PF02653	YPD4_3485
YPD4_3486	PF00005	ABC transporter
YPD4_3487	PF00072	Response regulator receiver domain
YPD4_3487	PF00512	His Kinase A (phospho-acceptor) domain
YPD4_3487	PF00672	HAMP domain
YPD4_3487	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_3487	PF12860	YPD4_3487
YPD4_3488	PF03486	HI0933-like protein
YPD4_3489	PF01384	YPD4_3489
YPD4_3490	PF01797	Transposase IS200 like
YPD4_3491	PF10625	YPD4_3491
YPD4_3492	PF00582	Universal stress protein family
YPD4_3493	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
YPD4_3493	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
YPD4_3494	PF08548	Peptidase M10 serralysin C terminal
YPD4_3495	PF04445	Putative SAM-dependent methyltransferase
YPD4_3496	PF01432	Peptidase family M3
YPD4_3497	PF04378	Ribosomal RNA small subunit methyltransferase D, RsmJ
YPD4_3498	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YPD4_3498	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPD4_3499	PF05651	YPD4_3499
YPD4_3499	PF13556	PucR C-terminal helix-turn-helix domain
YPD4_3500	PF02447	YPD4_3500
YPD4_3501	PF02595	Glycerate kinase family
YPD4_3502	PF06092	YPD4_3502
YPD4_3503	PF06092	YPD4_3503
YPD4_3504	PF11692	YPD4_3504
YPD4_3505	PF03212	Pertactin
YPD4_3505	PF03797	Autotransporter beta-domain
YPD4_3506	PF03631	YPD4_3506
YPD4_3507	PF02611	CDP-diacylglycerol pyrophosphatase
YPD4_3508	PF05170	YPD4_3508
YPD4_3509	PF00563	EAL domain
YPD4_3510	PF00294	pfkB family carbohydrate kinase
YPD4_3511	PF00675	Insulinase (Peptidase family M16)
YPD4_3511	PF05193	Peptidase M16 inactive domain
YPD4_3512	PF00375	Sodium:dicarboxylate symporter family
YPD4_3513	PF00754	F5/8 type C domain
YPD4_3514	PF06917	Periplasmic pectate lyase
YPD4_3515	PF06178	Oligogalacturonate-specific porin protein (KdgM)
YPD4_3516	PF00563	EAL domain
YPD4_3516	PF00990	GGDEF domain
YPD4_3516	PF17154	YPD4_3516
YPD4_3517	PF01270	Glycosyl hydrolases family 8
YPD4_3518	PF00005	ABC transporter
YPD4_3518	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YPD4_3519	PF00005	ABC transporter
YPD4_3519	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YPD4_3520	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_3520	PF12911	YPD4_3520
YPD4_3521	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_3522	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPD4_3523	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YPD4_3523	PF08479	POTRA domain, ShlB-type
YPD4_3523	PF17287	YPD4_3523
YPD4_3524	PF05594	YPD4_3524
YPD4_3525	PF07690	Major Facilitator Superfamily
YPD4_3526	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_3526	PF07730	Histidine kinase
YPD4_3527	PF01695	IstB-like ATP binding protein
YPD4_3528	PF00665	Integrase core domain
YPD4_3528	PF02796	Helix-turn-helix domain of resolvase
YPD4_3529	PF05231	YPD4_3529
YPD4_3530	PF00072	Response regulator receiver domain
YPD4_3530	PF00196	Bacterial regulatory proteins, luxR family
YPD4_3531	PF00884	Sulfatase
YPD4_3531	PF08019	YPD4_3531
YPD4_3532	PF12146	Putative lysophospholipase
YPD4_3533	PF00324	Amino acid permease
YPD4_3534	PF00221	Aromatic amino acid lyase
YPD4_3535	PF01175	Urocanase
YPD4_3535	PF17391	YPD4_3535
YPD4_3535	PF17392	YPD4_3535
YPD4_3536	PF00291	Pyridoxal-phosphate dependent enzyme
YPD4_3537	PF00156	Phosphoribosyl transferase domain
YPD4_3538	PF00892	EamA-like transporter family
YPD4_3539	PF13535	ATP-grasp domain
YPD4_3540	PF01497	Periplasmic binding protein
YPD4_3541	PF01032	FecCD transport family
YPD4_3542	PF01032	FecCD transport family
YPD4_3543	PF00005	ABC transporter
YPD4_3544	PF13310	YPD4_3544
YPD4_3545	PF01381	Helix-turn-helix
YPD4_3547	PF00589	Phage integrase family
YPD4_3547	PF13356	Domain of unknown function (DUF4102)
YPD4_3548	PF12833	Helix-turn-helix domain
YPD4_3548	PF13377	Periplasmic binding protein-like domain
YPD4_3549	PF02653	YPD4_3549
YPD4_3550	PF00005	ABC transporter
YPD4_3551	PF13407	Periplasmic binding protein domain
YPD4_3553	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPD4_3553	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPD4_3554	PF00419	Fimbrial protein
YPD4_3555	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPD4_3555	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPD4_3556	PF00577	Outer membrane usher protein
YPD4_3556	PF13953	PapC C-terminal domain
YPD4_3557	PF00577	Outer membrane usher protein
YPD4_3557	PF13954	PapC N-terminal domain
YPD4_3558	PF00419	Fimbrial protein
YPD4_3559	PF01757	YPD4_3559
YPD4_3560	PF13518	Helix-turn-helix domain
YPD4_3561	PF00665	Integrase core domain
YPD4_3561	PF13276	YPD4_3561
YPD4_3562	PF07690	Major Facilitator Superfamily
YPD4_3563	PF13988	YPD4_3563
YPD4_3565	PF01526	YPD4_3565
YPD4_3566	PF00009	Elongation factor Tu GTP binding domain
YPD4_3566	PF09106	Elongation factor SelB, winged helix
YPD4_3566	PF09107	Elongation factor SelB, winged helix
YPD4_3567	PF03841	L-seryl-tRNA selenium transferase
YPD4_3567	PF12390	YPD4_3567
YPD4_3568	PF04216	Protein involved in formate dehydrogenase formation
YPD4_3569	PF01292	Prokaryotic cytochrome b561
YPD4_3570	PF09163	Formate dehydrogenase N, transmembrane
YPD4_3570	PF13247	4Fe-4S dicluster domain
YPD4_3571	PF00384	Molybdopterin oxidoreductase
YPD4_3571	PF01568	Molydopterin dinucleotide binding domain
YPD4_3572	PF00384	Molybdopterin oxidoreductase
YPD4_3572	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YPD4_3573	PF02634	FdhD/NarQ family
YPD4_3574	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
YPD4_3574	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
YPD4_3575	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPD4_3575	PF00672	HAMP domain
YPD4_3575	PF16591	YPD4_3575
YPD4_3577	PF10517	YPD4_3577
YPD4_3578	PF10928	Protein of unknown function (DUF2810)
YPD4_3579	PF05068	Mannitol repressor
YPD4_3580	PF01232	Mannitol dehydrogenase Rossmann domain
YPD4_3580	PF08125	Mannitol dehydrogenase C-terminal domain
YPD4_3583	PF11254	YPD4_3583
YPD4_3584	PF02092	YPD4_3584
YPD4_3584	PF05746	DALR anticodon binding domain
YPD4_3585	PF02091	Glycyl-tRNA synthetase alpha subunit
YPD4_3586	PF03352	Methyladenine glycosylase
YPD4_3587	PF13673	Acetyltransferase (GNAT) domain
YPD4_3588	PF00691	OmpA family
YPD4_3588	PF13488	YPD4_3588
YPD4_3590	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YPD4_3590	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YPD4_3591	PF00128	Alpha amylase, catalytic domain
YPD4_3593	PF00155	Aminotransferase class I and II
YPD4_3594	PF02080	TrkA-C domain
YPD4_3594	PF06826	YPD4_3594
YPD4_3595	PF00011	Hsp20/alpha crystallin family
YPD4_3596	PF00011	Hsp20/alpha crystallin family
YPD4_3597	PF07119	YPD4_3597
YPD4_3598	PF07676	WD40-like Beta Propeller Repeat
YPD4_3600	PF00291	Pyridoxal-phosphate dependent enzyme
YPD4_3601	PF02423	Ornithine cyclodeaminase/mu-crystallin family
YPD4_3602	PF13518	Helix-turn-helix domain
YPD4_3603	PF00665	Integrase core domain
YPD4_3603	PF13276	YPD4_3603
YPD4_3604	PF08282	haloacid dehalogenase-like hydrolase
YPD4_3605	PF00204	DNA gyrase B
YPD4_3605	PF00986	DNA gyrase B subunit, carboxyl terminus
YPD4_3605	PF01751	Toprim domain
YPD4_3605	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPD4_3606	PF02463	RecF/RecN/SMC N terminal domain
YPD4_3607	PF00712	DNA polymerase III beta subunit, N-terminal domain
YPD4_3607	PF02767	DNA polymerase III beta subunit, central domain
YPD4_3607	PF02768	DNA polymerase III beta subunit, C-terminal domain
YPD4_3608	PF00308	Bacterial dnaA  protein
YPD4_3608	PF08299	Bacterial dnaA protein helix-turn-helix
YPD4_3609	PF00308	Bacterial dnaA  protein
YPD4_3609	PF11638	DnaA N-terminal domain
YPD4_3610	PF02096	60Kd inner membrane protein
YPD4_3610	PF14849	YidC periplasmic domain
YPD4_3611	PF01926	50S ribosome-binding GTPase
YPD4_3611	PF10396	GTP-binding protein TrmE N-terminus
YPD4_3611	PF12631	Catalytic cysteine-containing C-terminus of GTPase, MnmE
YPD4_3612	PF07055	Enoyl reductase FAD binding domain
YPD4_3612	PF12241	Trans-2-enoyl-CoA reductase catalytic region
YPD4_3612	PF12242	NAD(P)H binding domain of trans-2-enoyl-CoA reductase
YPD4_3614	PF00860	Permease family
YPD4_3615	PF13419	Haloacid dehalogenase-like hydrolase
YPD4_3616	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_3617	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_3618	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPD4_3619	PF04519	YPD4_3619
YPD4_3620	PF01895	PhoU domain
YPD4_3621	PF00005	ABC transporter
YPD4_3622	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_3623	PF00528	Binding-protein-dependent transport system inner membrane component
YPD4_3624	PF12849	PBP superfamily domain
YPD4_3625	PF01380	SIS domain
YPD4_3625	PF13522	Glutamine amidotransferase domain
YPD4_3626	PF00132	Bacterial transferase hexapeptide (six repeats)
YPD4_3626	PF12804	MobA-like NTP transferase domain
YPD4_3627	PF00401	ATP synthase, Delta/Epsilon chain, long alpha-helix domain
YPD4_3627	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
YPD4_3628	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPD4_3628	PF02874	ATP synthase alpha/beta family, beta-barrel domain
YPD4_3629	PF00231	ATP synthase
YPD4_3630	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPD4_3630	PF00306	ATP synthase alpha/beta chain, C terminal domain
YPD4_3630	PF02874	ATP synthase alpha/beta family, beta-barrel domain
YPD4_3631	PF00213	ATP synthase delta (OSCP) subunit
YPD4_3632	PF00430	ATP synthase B/B' CF(0)
YPD4_3633	PF00119	ATP synthase A chain
YPD4_3634	PF03899	YPD4_3634
YPD4_3635	PF02527	rRNA small subunit methyltransferase G
YPD4_3636	PF01134	Glucose inhibited division protein A
YPD4_3636	PF13932	GidA associated domain 3
YPD4_pCD0001	PF13683	YPD4_pCD0001
YPD4_pCD0002	PF05932	Tir chaperone protein (CesT) family
YPD4_pCD0003	PF03545	Yersinia virulence determinant (YopE)
YPD4_pCD0003	PF09020	YopE, N terminal
YPD4_pCD0004	PF05016	Plasmid stabilisation system protein
YPD4_pCD0005	PF02195	ParB-like nuclease domain
YPD4_pCD0006	PF00376	MerR family regulatory protein
YPD4_pCD0006	PF13614	AAA domain
YPD4_pCD0007	PF13276	YPD4_pCD0007
YPD4_pCD0008	PF01527	Transposase
YPD4_pCD0009	PF05818	YPD4_pCD0009
YPD4_pCD0011	PF03543	Yersinia/Haemophilus virulence surface antigen
YPD4_pCD0012	PF05932	Tir chaperone protein (CesT) family
YPD4_pCD0015	PF12468	Type III secretion system leucine rich repeat protein
YPD4_pCD0016	PF13610	YPD4_pCD0016
YPD4_pCD0017	PF05844	YopD protein
YPD4_pCD0018	PF04888	YPD4_pCD0018
YPD4_pCD0019	PF07720	Tetratricopeptide repeat
YPD4_pCD0020	PF04792	V antigen (LcrV) protein
YPD4_pCD0021	PF09621	YPD4_pCD0021
YPD4_pCD0022	PF00771	FHIPEP family
YPD4_pCD0024	PF09474	YPD4_pCD0024
YPD4_pCD0026	PF07201	HrpJ-like domain
YPD4_pCD0027	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPD4_pCD0027	PF02874	ATP synthase alpha/beta family, beta-barrel domain
YPD4_pCD0028	PF07321	Type III secretion protein YscO
YPD4_pCD0029	PF02120	Flagellar hook-length control protein FliK
YPD4_pCD0030	PF01052	Surface presentation of antigens (SPOA)
YPD4_pCD0031	PF00813	YPD4_pCD0031
YPD4_pCD0032	PF01311	YPD4_pCD0032
YPD4_pCD0033	PF01312	FlhB HrpN YscU SpaS Family
YPD4_pCD0034	PF09619	Type III secretion system lipoprotein chaperone (YscW)
YPD4_pCD0035	PF02311	AraC-like ligand binding domain
YPD4_pCD0035	PF12833	Helix-turn-helix domain
YPD4_pCD0036	PF05932	Tir chaperone protein (CesT) family
YPD4_pCD0038	PF00263	YPD4_pCD0038
YPD4_pCD0038	PF03958	Bacterial type II/III secretion system short domain
YPD4_pCD0040	PF16693	YPD4_pCD0040
YPD4_pCD0041	PF09477	Bacterial type II secretion system chaperone protein (type_III_yscG)
YPD4_pCD0042	PF09025	YopR Core
YPD4_pCD0043	PF17001	YPD4_pCD0043
YPD4_pCD0044	PF01514	Secretory protein of YscJ/FliF family
YPD4_pCD0045	PF06578	YPD4_pCD0045
YPD4_pCD0046	PF02108	YPD4_pCD0046
YPD4_pCD0047	PF09013	YopH, N-terminal
YPD4_pCD0049	PF00102	Protein-tyrosine phosphatase
YPD4_pCD0049	PF09013	YopH, N-terminal
YPD4_pCD0050	PF13683	YPD4_pCD0050
YPD4_pCD0051	PF03421	YPD4_pCD0051
YPD4_pCD0052	PF00069	Protein kinase domain
YPD4_pCD0052	PF09632	Rac1-binding domain
YPD4_pCD0054	PF02387	YPD4_pCD0054
YPD4_pCD0055	PF13276	YPD4_pCD0055
YPD4_pCD0056	PF01527	Transposase
YPD4_pCD0058	PF03895	YadA-like C-terminal region
YPD4_pCD0058	PF05658	Head domain of trimeric autotransporter adhesin
YPD4_pCD0058	PF05662	Coiled stalk of trimeric autotransporter adhesin
YPD4_pCD0060	PF01526	YPD4_pCD0060
YPD4_pCD0060	PF13700	YPD4_pCD0060
YPD4_pCD0061	PF00239	Resolvase, N terminal domain
YPD4_pCD0061	PF02796	Helix-turn-helix domain of resolvase
YPD4_pCD0064	PF13276	YPD4_pCD0064
YPD4_pCD0064	PF13683	YPD4_pCD0064
YPD4_pCD0065	PF05932	Tir chaperone protein (CesT) family
YPD4_pCD0066	PF01695	IstB-like ATP binding protein
YPD4_pMT0001	PF00665	Integrase core domain
YPD4_pMT0001	PF02796	Helix-turn-helix domain of resolvase
YPD4_pMT0002	PF01695	IstB-like ATP binding protein
YPD4_pMT0003	PF02413	YPD4_pMT0003
YPD4_pMT0004	PF03335	Phage tail fibre repeat
YPD4_pMT0004	PF03406	YPD4_pMT0004
YPD4_pMT0004	PF07484	Phage Tail Collar Domain
YPD4_pMT0005	PF14301	YPD4_pMT0005
YPD4_pMT0006	PF09327	YPD4_pMT0006
YPD4_pMT0006	PF12421	YPD4_pMT0006
YPD4_pMT0006	PF13550	YPD4_pMT0006
YPD4_pMT0008	PF00877	NlpC/P60 family
YPD4_pMT0008	PF14464	Prokaryotic homologs of the JAB domain
YPD4_pMT0009	PF05100	YPD4_pMT0009
YPD4_pMT0010	PF05939	YPD4_pMT0010
YPD4_pMT0011	PF09718	YPD4_pMT0011
YPD4_pMT0013	PF02368	Bacterial Ig-like domain (group 2)
YPD4_pMT0019	PF02368	Bacterial Ig-like domain (group 2)
YPD4_pMT0023	PF03237	Terminase-like family
YPD4_pMT0026	PF00005	ABC transporter
YPD4_pMT0027	PF02195	ParB-like nuclease domain
YPD4_pMT0028	PF02195	ParB-like nuclease domain
YPD4_pMT0029	PF00270	DEAD/DEAH box helicase
YPD4_pMT0029	PF00271	Helicase conserved C-terminal domain
YPD4_pMT0031	PF03614	YPD4_pMT0031
YPD4_pMT0034	PF01797	Transposase IS200 like
YPD4_pMT0037	PF13476	AAA domain
YPD4_pMT0038	PF00149	Calcineurin-like phosphoesterase
YPD4_pMT0039	PF09084	NMT1/THI5 like
YPD4_pMT0041	PF01051	Initiator Replication protein
YPD4_pMT0044	PF10765	Protein of unknown function (DUF2591)
YPD4_pMT0045	PF01145	SPFH domain / Band 7 family
YPD4_pMT0046	PF00154	recA bacterial DNA recombination protein
YPD4_pMT0047	PF01367	5'-3' exonuclease, C-terminal SAM fold
YPD4_pMT0047	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
YPD4_pMT0052	PF02811	PHP domain
YPD4_pMT0052	PF07733	Bacterial DNA polymerase III alpha subunit
YPD4_pMT0052	PF14579	Helix-hairpin-helix motif
YPD4_pMT0053	PF07728	AAA domain (dynein-related subfamily)
YPD4_pMT0054	PF06213	YPD4_pMT0054
YPD4_pMT0054	PF11775	YPD4_pMT0054
YPD4_pMT0056	PF00589	Phage integrase family
YPD4_pMT0057	PF09255	Caf1 Capsule antigen
YPD4_pMT0058	PF00577	Outer membrane usher protein
YPD4_pMT0058	PF13953	PapC C-terminal domain
YPD4_pMT0058	PF13954	PapC N-terminal domain
YPD4_pMT0059	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPD4_pMT0059	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPD4_pMT0060	PF06445	GyrI-like small molecule binding domain
YPD4_pMT0060	PF12833	Helix-turn-helix domain
YPD4_pMT0061	PF00872	YPD4_pMT0061
YPD4_pMT0062	PF01548	YPD4_pMT0062
YPD4_pMT0062	PF02371	YPD4_pMT0062
YPD4_pMT0064	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
YPD4_pMT0066	PF13091	PLD-like domain
YPD4_pMT0067	PF04754	YPD4_pMT0067
YPD4_pMT0068	PF00239	Resolvase, N terminal domain
YPD4_pMT0069	PF13614	AAA domain
YPD4_pMT0070	PF02195	ParB-like nuclease domain
YPD4_pMT0070	PF08775	ParB family
YPD4_pMT0071	PF13191	AAA ATPase domain
YPD4_pMT0072	PF01555	DNA methylase
YPD4_pMT0073	PF07128	YPD4_pMT0073
YPD4_pMT0075	PF07275	Antirestriction protein (ArdA)
YPD4_pMT0076	PF02195	ParB-like nuclease domain
YPD4_pPCP0001	PF00665	Integrase core domain
YPD4_pPCP0001	PF02796	Helix-turn-helix domain of resolvase
YPD4_pPCP0002	PF01695	IstB-like ATP binding protein
YPD4_pPCP0004	PF16765	YPD4_pPCP0004
YPD4_pPCP0005	PF16754	YPD4_pPCP0005
YPD4_pPCP0007	PF01278	Omptin family
YPD4_pPCP0008	PF13744	Helix-turn-helix domain
YPD4_pPCP0009	PF05973	YPD4_pPCP0009