YPD4_0002 SM00344 helix_turn_helix ASNC type YPD4_0004 SM00327 von Willebrand factor (vWF) type A domain YPD4_0005 SM00382 ATPases associated with a variety of cellular activities YPD4_0010 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPD4_0010 SM00895 YPD4_0010 YPD4_0016 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YPD4_0016 SM00474 3'-5' exonuclease YPD4_0016 SM00475 5'-3' exonuclease YPD4_0016 SM00482 DNA polymerase A domain YPD4_0017 SM01321 YPD4_0017 YPD4_0020 SM00729 Elongator protein 3, MiaB family, Radical SAM YPD4_0021 SM00382 ATPases associated with a variety of cellular activities YPD4_0021 SM00448 cheY-homologous receiver domain YPD4_0022 SM00091 PAS domain YPD4_0022 SM00387 Histidine kinase-like ATPases YPD4_0022 SM00388 His Kinase A (phosphoacceptor) domain YPD4_0023 SM01230 YPD4_0023 YPD4_0028 SM00382 ATPases associated with a variety of cellular activities YPD4_0035 SM00487 DEAD-like helicases superfamily YPD4_0035 SM00490 helicase superfamily c-terminal domain YPD4_0037 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPD4_0037 SM00954 Region found in RelA / SpoT proteins YPD4_0038 SM00072 Guanylate kinase homologues. YPD4_0039 SM00532 Ligase N family YPD4_0048 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain YPD4_0048 SM01232 YPD4_0048 YPD4_0056 SM00829 Enoylreductase YPD4_0061 SM00450 Rhodanese Homology Domain YPD4_0064 SM00971 Serine acetyltransferase, N-terminal YPD4_0066 SM00342 helix_turn_helix, arabinose operon control protein YPD4_0067 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPD4_0067 SM00387 Histidine kinase-like ATPases YPD4_0067 SM00388 His Kinase A (phosphoacceptor) domain YPD4_0068 SM00448 cheY-homologous receiver domain YPD4_0068 SM00862 Transcriptional regulatory protein, C terminal YPD4_0086 SM01321 YPD4_0086 YPD4_0087 SM00382 ATPases associated with a variety of cellular activities YPD4_0092 SM00382 ATPases associated with a variety of cellular activities YPD4_0092 SM01086 C-terminal, D2-small domain, of ClpB protein YPD4_0095 SM00354 helix_turn _helix lactose operon repressor YPD4_0096 SM00487 DEAD-like helicases superfamily YPD4_0096 SM00490 helicase superfamily c-terminal domain YPD4_0104 SM00420 helix_turn_helix, Deoxyribose operon repressor YPD4_0104 SM01134 YPD4_0104 YPD4_0106 SM00450 Rhodanese Homology Domain YPD4_0107 SM00421 helix_turn_helix, Lux Regulon YPD4_0115 SM00316 Ribosomal protein S1-like RNA-binding domain YPD4_0115 SM00732 Likely ribonuclease with RNase H fold. YPD4_0117 SM00448 cheY-homologous receiver domain YPD4_0117 SM00862 Transcriptional regulatory protein, C terminal YPD4_0118 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPD4_0118 SM00387 Histidine kinase-like ATPases YPD4_0118 SM00388 His Kinase A (phosphoacceptor) domain YPD4_0121 SM00363 S4 RNA-binding domain YPD4_0146 SM00354 helix_turn _helix lactose operon repressor YPD4_0153 SM00100 Cyclic nucleotide-monophosphate binding domain YPD4_0153 SM00419 helix_turn_helix, cAMP Regulatory protein YPD4_0159 SM00062 Bacterial periplasmic substrate-binding proteins YPD4_0160 SM00382 ATPases associated with a variety of cellular activities YPD4_0165 SM00382 ATPases associated with a variety of cellular activities YPD4_0176 SM00838 Elongation factor G C-terminus YPD4_0176 SM00889 Elongation factor G, domain IV YPD4_0178 SM01321 YPD4_0178 YPD4_0180 SM01403 YPD4_0180 YPD4_0184 SM01382 YPD4_0184 YPD4_0184 SM01383 YPD4_0184 YPD4_0186 SM00322 K homology RNA-binding domain YPD4_0188 SM01374 YPD4_0188 YPD4_0189 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YPD4_0200 SM00363 S4 RNA-binding domain YPD4_0200 SM01390 YPD4_0200 YPD4_0201 SM00662 RNA polymerases D YPD4_0203 SM00422 helix_turn_helix, mercury resistance YPD4_0215 SM00382 ATPases associated with a variety of cellular activities YPD4_0222 SM00421 helix_turn_helix, Lux Regulon YPD4_0222 SM00448 cheY-homologous receiver domain YPD4_0223 SM00387 Histidine kinase-like ATPases YPD4_0223 SM00388 His Kinase A (phosphoacceptor) domain YPD4_0223 SM00448 cheY-homologous receiver domain YPD4_0226 SM00342 helix_turn_helix, arabinose operon control protein YPD4_0231 SM00382 ATPases associated with a variety of cellular activities YPD4_0243 SM00382 ATPases associated with a variety of cellular activities YPD4_0251 SM00729 Elongator protein 3, MiaB family, Radical SAM YPD4_0270 SM00060 Fibronectin type 3 domain YPD4_0271 SM00869 Autotransporter beta-domain YPD4_0274 SM00563 Phosphate acyltransferases YPD4_0279 SM00829 Enoylreductase YPD4_0280 SM00382 ATPases associated with a variety of cellular activities YPD4_0281 SM01005 Alanine racemase, C-terminal domain YPD4_0288 SM01007 Class II Aldolase and Adducin N-terminal domain YPD4_0291 SM00342 helix_turn_helix, arabinose operon control protein YPD4_0292 SM00342 helix_turn_helix, arabinose operon control protein YPD4_0295 SM01276 YPD4_0295 YPD4_0299 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPD4_0307 SM00841 Elongation factor P, C-terminal YPD4_0307 SM01185 YPD4_0307 YPD4_0317 SM00479 YPD4_0317 YPD4_0321 SM00257 Lysin motif YPD4_0321 SM00646 YPD4_0321 YPD4_0322 SM00853 MutL C terminal dimerisation domain YPD4_0322 SM01340 YPD4_0322 YPD4_0326 SM00244 prohibitin homologues YPD4_0327 SM00244 prohibitin homologues YPD4_0328 SM00788 Adenylosuccinate synthetase YPD4_0330 SM00357 Cold shock protein domain YPD4_0330 SM00955 YPD4_0330 YPD4_0331 SM00316 Ribosomal protein S1-like RNA-binding domain YPD4_0332 SM00967 RNA 2'-O ribose methyltransferase substrate binding YPD4_0335 SM00382 ATPases associated with a variety of cellular activities YPD4_0337 SM00382 ATPases associated with a variety of cellular activities YPD4_0347 SM00342 helix_turn_helix, arabinose operon control protein YPD4_0353 SM01133 YPD4_0353 YPD4_0357 SM00382 ATPases associated with a variety of cellular activities YPD4_0365 SM00267 diguanylate cyclase YPD4_0371 SM00749 bacterial OsmY and nodulation domain YPD4_0375 SM01133 YPD4_0375 YPD4_0377 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain YPD4_0382 SM00382 ATPases associated with a variety of cellular activities YPD4_0383 SM00530 Helix-turn-helix XRE-family like proteins YPD4_0385 SM00382 ATPases associated with a variety of cellular activities YPD4_0388 SM00267 diguanylate cyclase YPD4_0390 SM00831 Cation transporter/ATPase, N-terminus YPD4_0394 SM00855 Phosphoglycerate mutase family YPD4_0395 SM00342 helix_turn_helix, arabinose operon control protein YPD4_0395 SM00871 Bacterial transcription activator, effector binding domain YPD4_0397 SM00448 cheY-homologous receiver domain YPD4_0397 SM00862 Transcriptional regulatory protein, C terminal YPD4_0404 SM00852 Probable molybdopterin binding domain YPD4_0409 SM00271 DnaJ molecular chaperone homology domain YPD4_0412 SM00904 Riboflavin kinase YPD4_0417 SM01321 YPD4_0417 YPD4_0419 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain YPD4_0420 SM00851 MGS-like domain YPD4_0420 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YPD4_0425 SM01321 YPD4_0425 YPD4_0429 SM00650 Ribosomal RNA adenine dimethylases YPD4_0433 SM00271 DnaJ molecular chaperone homology domain YPD4_0443 SM00382 ATPases associated with a variety of cellular activities YPD4_0443 SM01086 C-terminal, D2-small domain, of ClpB protein YPD4_0455 SM00487 DEAD-like helicases superfamily YPD4_0455 SM00490 helicase superfamily c-terminal domain YPD4_0456 SM00486 DNA polymerase type-B family YPD4_0458 SM00382 ATPases associated with a variety of cellular activities YPD4_0463 SM00382 ATPases associated with a variety of cellular activities YPD4_0467 SM01329 YPD4_0467 YPD4_0468 SM00917 LeuA allosteric (dimerisation) domain YPD4_0473 SM01321 YPD4_0473 YPD4_0474 SM00354 helix_turn _helix lactose operon repressor YPD4_0489 SM00842 Cell division protein FtsA YPD4_0490 SM00864 Tubulin/FtsZ family, GTPase domain YPD4_0490 SM00865 Tubulin/FtsZ family, C-terminal domain YPD4_0494 SM00957 SecA DEAD-like domain YPD4_0494 SM00958 SecA preprotein cross-linking domain YPD4_0496 SM00382 ATPases associated with a variety of cellular activities YPD4_0505 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPD4_0505 SM00895 YPD4_0505 YPD4_0509 SM00858 YPD4_0509 YPD4_0511 SM01321 YPD4_0511 YPD4_0515 SM00869 Autotransporter beta-domain YPD4_0521 SM00327 von Willebrand factor (vWF) type A domain YPD4_0522 SM00327 von Willebrand factor (vWF) type A domain YPD4_0524 SM00327 von Willebrand factor (vWF) type A domain YPD4_0526 SM00912 haemagglutination activity domain YPD4_0528 SM00869 Autotransporter beta-domain YPD4_0531 SM00382 ATPases associated with a variety of cellular activities YPD4_0533 SM00354 helix_turn _helix lactose operon repressor YPD4_0538 SM01217 YPD4_0538 YPD4_0556 SM00493 YPD4_0556 YPD4_0556 SM00766 DNA primase DnaG DnaB-binding YPD4_0559 SM01207 YPD4_0559 YPD4_0560 SM00905 Dihydroneopterin aldolase YPD4_0564 SM00287 Bacterial SH3 domain homologues YPD4_0565 SM01118 YPD4_0565 YPD4_0579 SM00387 Histidine kinase-like ATPases YPD4_0579 SM00433 TopoisomeraseII YPD4_0582 SM00434 DNA Topoisomerase IV YPD4_0583 SM00563 Phosphate acyltransferases YPD4_0589 SM00342 helix_turn_helix, arabinose operon control protein YPD4_0606 SM01321 YPD4_0606 YPD4_0607 SM01321 YPD4_0607 YPD4_0620 SM00382 ATPases associated with a variety of cellular activities YPD4_0625 SM00382 ATPases associated with a variety of cellular activities YPD4_0628 SM00858 YPD4_0628 YPD4_0633 SM01321 YPD4_0633 YPD4_0642 SM00862 Transcriptional regulatory protein, C terminal YPD4_0659 SM00354 helix_turn _helix lactose operon repressor YPD4_0665 SM00869 Autotransporter beta-domain YPD4_0667 SM00869 Autotransporter beta-domain YPD4_0672 SM00382 ATPases associated with a variety of cellular activities YPD4_0673 SM00382 ATPases associated with a variety of cellular activities YPD4_0681 SM00382 ATPases associated with a variety of cellular activities YPD4_0683 SM00823 Phosphopantetheine attachment site YPD4_0683 SM00825 Beta-ketoacyl synthase YPD4_0687 SM00364 Leucine-rich repeats, bacterial type YPD4_0687 SM00369 Leucine-rich repeats, typical (most populated) subfamily YPD4_0688 SM00364 Leucine-rich repeats, bacterial type YPD4_0689 SM00364 Leucine-rich repeats, bacterial type YPD4_0690 SM00869 Autotransporter beta-domain YPD4_0695 SM00052 Putative diguanylate phosphodiesterase YPD4_0695 SM00091 PAS domain YPD4_0695 SM00267 diguanylate cyclase YPD4_0702 SM01006 Siderophore biosynthesis protein domain YPD4_0708 SM00421 helix_turn_helix, Lux Regulon YPD4_0719 SM00382 ATPases associated with a variety of cellular activities YPD4_0719 SM01086 C-terminal, D2-small domain, of ClpB protein YPD4_0727 SM00382 ATPases associated with a variety of cellular activities YPD4_0732 SM00478 endonuclease III YPD4_0732 SM00525 YPD4_0732 YPD4_0738 SM00729 Elongator protein 3, MiaB family, Radical SAM YPD4_0740 SM01152 YPD4_0740 YPD4_0744 SM00382 ATPases associated with a variety of cellular activities YPD4_0747 SM00732 Likely ribonuclease with RNase H fold. YPD4_0752 SM00731 SprT homologues. YPD4_0757 SM00861 Transketolase, pyrimidine binding domain YPD4_0758 SM01321 YPD4_0758 YPD4_0759 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPD4_0771 SM01011 Aminopeptidase P, N-terminal domain YPD4_0784 SM00448 cheY-homologous receiver domain YPD4_0784 SM00862 Transcriptional regulatory protein, C terminal YPD4_0785 SM00387 Histidine kinase-like ATPases YPD4_0785 SM00388 His Kinase A (phosphoacceptor) domain YPD4_0791 SM00937 YPD4_0791 YPD4_0794 SM00530 Helix-turn-helix XRE-family like proteins YPD4_0795 SM00530 Helix-turn-helix XRE-family like proteins YPD4_0796 SM00778 Zinc-binding domain of primase-helicase YPD4_0796 SM00885 D5 N terminal like YPD4_0812 SM00382 ATPases associated with a variety of cellular activities YPD4_0813 SM00382 ATPases associated with a variety of cellular activities YPD4_0821 SM00354 helix_turn _helix lactose operon repressor YPD4_0824 SM00354 helix_turn _helix lactose operon repressor YPD4_0839 SM00420 helix_turn_helix, Deoxyribose operon repressor YPD4_0839 SM01134 YPD4_0839 YPD4_0841 SM01321 YPD4_0841 YPD4_0843 SM00382 ATPases associated with a variety of cellular activities YPD4_0845 SM00869 Autotransporter beta-domain YPD4_0847 SM00947 Carbonic anhydrase YPD4_0851 SM00382 ATPases associated with a variety of cellular activities YPD4_0860 SM00862 Transcriptional regulatory protein, C terminal YPD4_0861 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPD4_0861 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPD4_0861 SM00319 Homologues of the ligand binding domain of Tar YPD4_0863 SM00849 Metallo-beta-lactamase superfamily YPD4_0868 SM00354 helix_turn _helix lactose operon repressor YPD4_0870 SM00563 Phosphate acyltransferases YPD4_0873 SM00927 DNA mismatch repair enzyme MutH YPD4_0875 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. YPD4_0879 SM00382 ATPases associated with a variety of cellular activities YPD4_0889 SM00646 YPD4_0889 YPD4_0890 SM00925 MltA specific insert domain YPD4_0897 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YPD4_0897 SM00475 5'-3' exonuclease YPD4_0901 SM01321 YPD4_0901 YPD4_0907 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPD4_0917 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPD4_0920 SM00935 Outer membrane protein (OmpH-like) YPD4_0926 SM00481 DNA polymerase alpha chain like domain YPD4_0929 SM00977 TilS substrate C-terminal domain YPD4_0931 SM01322 YPD4_0931 YPD4_0938 SM00382 ATPases associated with a variety of cellular activities YPD4_0943 SM00257 Lysin motif YPD4_0944 SM00849 Metallo-beta-lactamase superfamily YPD4_0947 SM00479 YPD4_0947 YPD4_0949 SM00382 ATPases associated with a variety of cellular activities YPD4_0957 SM01321 YPD4_0957 YPD4_0968 SM00861 Transketolase, pyrimidine binding domain YPD4_0971 SM00881 CoA binding domain YPD4_0984 SM00382 ATPases associated with a variety of cellular activities YPD4_0986 SM00855 Phosphoglycerate mutase family YPD4_0993 SM00382 ATPases associated with a variety of cellular activities YPD4_0997 SM00382 ATPases associated with a variety of cellular activities YPD4_1002 SM00729 Elongator protein 3, MiaB family, Radical SAM YPD4_1002 SM00876 Biotin and Thiamin Synthesis associated domain YPD4_1006 SM00382 ATPases associated with a variety of cellular activities YPD4_1007 SM00487 DEAD-like helicases superfamily YPD4_1007 SM00490 helicase superfamily c-terminal domain YPD4_1009 SM00729 Elongator protein 3, MiaB family, Radical SAM YPD4_1013 SM01321 YPD4_1013 YPD4_1022 SM01321 YPD4_1022 YPD4_1025 SM00091 PAS domain YPD4_1025 SM00387 Histidine kinase-like ATPases YPD4_1025 SM00388 His Kinase A (phosphoacceptor) domain YPD4_1026 SM00382 ATPases associated with a variety of cellular activities YPD4_1026 SM00448 cheY-homologous receiver domain YPD4_1032 SM00382 ATPases associated with a variety of cellular activities YPD4_1035 SM00487 DEAD-like helicases superfamily YPD4_1035 SM00490 helicase superfamily c-terminal domain YPD4_1041 SM00490 helicase superfamily c-terminal domain YPD4_1042 SM01321 YPD4_1042 YPD4_1047 SM01118 YPD4_1047 YPD4_1048 SM00507 HNH nucleases YPD4_1050 SM00382 ATPases associated with a variety of cellular activities YPD4_1059 SM00382 ATPases associated with a variety of cellular activities YPD4_1062 SM00450 Rhodanese Homology Domain YPD4_1066 SM00382 ATPases associated with a variety of cellular activities YPD4_1072 SM00487 DEAD-like helicases superfamily YPD4_1072 SM00488 YPD4_1072 YPD4_1072 SM00491 YPD4_1072 YPD4_1073 SM01060 YPD4_1073 YPD4_1076 SM00852 Probable molybdopterin binding domain YPD4_1081 SM00434 DNA Topoisomerase IV YPD4_1082 SM00387 Histidine kinase-like ATPases YPD4_1082 SM00388 His Kinase A (phosphoacceptor) domain YPD4_1082 SM00448 cheY-homologous receiver domain YPD4_1083 SM00421 helix_turn_helix, Lux Regulon YPD4_1083 SM00448 cheY-homologous receiver domain YPD4_1088 SM01321 YPD4_1088 YPD4_1092 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPD4_1092 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPD4_1094 SM00530 Helix-turn-helix XRE-family like proteins YPD4_1097 SM01007 Class II Aldolase and Adducin N-terminal domain YPD4_1098 SM00420 helix_turn_helix, Deoxyribose operon repressor YPD4_1098 SM01134 YPD4_1098 YPD4_1119 SM01321 YPD4_1119 YPD4_1120 SM00487 DEAD-like helicases superfamily YPD4_1120 SM00490 helicase superfamily c-terminal domain YPD4_1121 SM00363 S4 RNA-binding domain YPD4_1124 SM00382 ATPases associated with a variety of cellular activities YPD4_1128 SM00052 Putative diguanylate phosphodiesterase YPD4_1130 SM00014 Acid phosphatase homologues YPD4_1131 SM00833 Cobalamin synthesis protein cobW C-terminal domain YPD4_1132 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPD4_1132 SM00895 YPD4_1132 YPD4_1135 SM00841 Elongation factor P, C-terminal YPD4_1135 SM01185 YPD4_1135 YPD4_1144 SM00382 ATPases associated with a variety of cellular activities YPD4_1150 SM00862 Transcriptional regulatory protein, C terminal YPD4_1155 SM00518 AP endonuclease family 2 YPD4_1162 SM00382 ATPases associated with a variety of cellular activities YPD4_1168 SM00382 ATPases associated with a variety of cellular activities YPD4_1168 SM00930 YPD4_1168 YPD4_1170 SM00936 Penicillin-binding protein 5, C-terminal domain YPD4_1172 SM00420 helix_turn_helix, Deoxyribose operon repressor YPD4_1172 SM01134 YPD4_1172 YPD4_1173 SM01133 YPD4_1173 YPD4_1174 SM00014 Acid phosphatase homologues YPD4_1179 SM00382 ATPases associated with a variety of cellular activities YPD4_1185 SM00062 Bacterial periplasmic substrate-binding proteins YPD4_1185 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPD4_1186 SM00244 prohibitin homologues YPD4_1190 SM00382 ATPases associated with a variety of cellular activities YPD4_1196 SM00062 Bacterial periplasmic substrate-binding proteins YPD4_1196 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPD4_1197 SM00382 ATPases associated with a variety of cellular activities YPD4_1198 SM00830 Chorismate mutase type II YPD4_1210 SM00382 ATPases associated with a variety of cellular activities YPD4_1212 SM00382 ATPases associated with a variety of cellular activities YPD4_1212 SM01086 C-terminal, D2-small domain, of ClpB protein YPD4_1213 SM01321 YPD4_1213 YPD4_1215 SM00382 ATPases associated with a variety of cellular activities YPD4_1216 SM00382 ATPases associated with a variety of cellular activities YPD4_1218 SM00344 helix_turn_helix ASNC type YPD4_1219 SM00843 YPD4_1219 YPD4_1221 SM00382 ATPases associated with a variety of cellular activities YPD4_1230 SM00870 YPD4_1230 YPD4_1236 SM00316 Ribosomal protein S1-like RNA-binding domain YPD4_1237 SM00849 Metallo-beta-lactamase superfamily YPD4_1238 SM00382 ATPases associated with a variety of cellular activities YPD4_1240 SM01150 YPD4_1240 YPD4_1247 SM01321 YPD4_1247 YPD4_1251 SM00849 Metallo-beta-lactamase superfamily YPD4_1261 SM00981 YPD4_1261 YPD4_1262 SM00382 ATPases associated with a variety of cellular activities YPD4_1266 SM01321 YPD4_1266 YPD4_1267 SM00825 Beta-ketoacyl synthase YPD4_1268 SM00382 ATPases associated with a variety of cellular activities YPD4_1274 SM01321 YPD4_1274 YPD4_1281 SM00851 MGS-like domain YPD4_1283 SM00881 CoA binding domain YPD4_1284 SM00992 Hemimethylated DNA-binding protein YccV like YPD4_1285 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase YPD4_1292 SM00825 Beta-ketoacyl synthase YPD4_1299 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YPD4_1306 SM00382 ATPases associated with a variety of cellular activities YPD4_1306 SM01086 C-terminal, D2-small domain, of ClpB protein YPD4_1325 SM00382 ATPases associated with a variety of cellular activities YPD4_1329 SM00852 Probable molybdopterin binding domain YPD4_1331 SM00382 ATPases associated with a variety of cellular activities YPD4_1335 SM00829 Enoylreductase YPD4_1341 SM00382 ATPases associated with a variety of cellular activities YPD4_1344 SM00919 Malic enzyme, NAD binding domain YPD4_1344 SM01274 YPD4_1344 YPD4_1352 SM01321 YPD4_1352 YPD4_1358 SM01091 Transporter associated domain YPD4_1362 SM01006 Siderophore biosynthesis protein domain YPD4_1364 SM00382 ATPases associated with a variety of cellular activities YPD4_1372 SM01350 YPD4_1372 YPD4_1384 SM00382 ATPases associated with a variety of cellular activities YPD4_1385 SM00382 ATPases associated with a variety of cellular activities YPD4_1391 SM00634 Bacterial Ig-like domain (group 1) YPD4_1396 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YPD4_1404 SM00421 helix_turn_helix, Lux Regulon YPD4_1404 SM00448 cheY-homologous receiver domain YPD4_1417 SM00382 ATPases associated with a variety of cellular activities YPD4_1421 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain YPD4_1425 SM00873 B3/4 domain YPD4_1425 SM00874 tRNA synthetase B5 domain YPD4_1425 SM00896 Ferredoxin-fold anticodon binding domain YPD4_1429 SM00382 ATPases associated with a variety of cellular activities YPD4_1449 SM00382 ATPases associated with a variety of cellular activities YPD4_1454 SM00382 ATPases associated with a variety of cellular activities YPD4_1456 SM01321 YPD4_1456 YPD4_1464 SM00354 helix_turn _helix lactose operon repressor YPD4_1468 SM00479 YPD4_1468 YPD4_1475 SM00347 helix_turn_helix multiple antibiotic resistance protein YPD4_1480 SM00363 S4 RNA-binding domain YPD4_1486 SM00382 ATPases associated with a variety of cellular activities YPD4_1487 SM00382 ATPases associated with a variety of cellular activities YPD4_1491 SM01321 YPD4_1491 YPD4_1492 SM00382 ATPases associated with a variety of cellular activities YPD4_1498 SM00953 YPD4_1498 YPD4_1500 SM00091 PAS domain YPD4_1500 SM00382 ATPases associated with a variety of cellular activities YPD4_1501 SM01321 YPD4_1501 YPD4_1503 SM00382 ATPases associated with a variety of cellular activities YPD4_1505 SM00972 Spore Coat Protein U domain YPD4_1508 SM00972 Spore Coat Protein U domain YPD4_1509 SM00972 Spore Coat Protein U domain YPD4_1513 SM00945 ProQ/FINO family YPD4_1514 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPD4_1514 SM00245 tail specific protease YPD4_1524 SM00346 helix_turn_helix isocitrate lyase regulation YPD4_1525 SM00644 YPD4_1525 YPD4_1530 SM00382 ATPases associated with a variety of cellular activities YPD4_1538 SM00354 helix_turn _helix lactose operon repressor YPD4_1540 SM00382 ATPases associated with a variety of cellular activities YPD4_1542 SM00090 RIO-like kinase YPD4_1543 SM00382 ATPases associated with a variety of cellular activities YPD4_1544 SM00342 helix_turn_helix, arabinose operon control protein YPD4_1550 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YPD4_1550 SM00091 PAS domain YPD4_1550 SM00267 diguanylate cyclase YPD4_1557 SM01091 Transporter associated domain YPD4_1558 SM00347 helix_turn_helix multiple antibiotic resistance protein YPD4_1568 SM00903 Flavin reductase like domain YPD4_1573 SM00487 DEAD-like helicases superfamily YPD4_1573 SM00490 helicase superfamily c-terminal domain YPD4_1575 SM01022 YPD4_1575 YPD4_1589 SM01321 YPD4_1589 YPD4_1590 SM00634 Bacterial Ig-like domain (group 1) YPD4_1593 SM00858 YPD4_1593 YPD4_1602 SM00047 Lysozyme subfamily 2 YPD4_1606 SM01007 Class II Aldolase and Adducin N-terminal domain YPD4_1609 SM00382 ATPases associated with a variety of cellular activities YPD4_1627 SM00478 endonuclease III YPD4_1630 SM00342 helix_turn_helix, arabinose operon control protein YPD4_1637 SM00062 Bacterial periplasmic substrate-binding proteins YPD4_1637 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPD4_1639 SM00382 ATPases associated with a variety of cellular activities YPD4_1651 SM00421 helix_turn_helix, Lux Regulon YPD4_1651 SM00448 cheY-homologous receiver domain YPD4_1652 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YPD4_1652 SM00465 GIY-YIG type nucleases (URI domain) YPD4_1663 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPD4_1663 SM00866 YPD4_1663 YPD4_1668 SM00382 ATPases associated with a variety of cellular activities YPD4_1670 SM00382 ATPases associated with a variety of cellular activities YPD4_1677 SM00822 YPD4_1677 YPD4_1677 SM00823 Phosphopantetheine attachment site YPD4_1677 SM00824 Thioesterase YPD4_1677 SM00825 Beta-ketoacyl synthase YPD4_1677 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YPD4_1678 SM00823 Phosphopantetheine attachment site YPD4_1679 SM00342 helix_turn_helix, arabinose operon control protein YPD4_1680 SM00382 ATPases associated with a variety of cellular activities YPD4_1681 SM00382 ATPases associated with a variety of cellular activities YPD4_1691 SM00062 Bacterial periplasmic substrate-binding proteins YPD4_1691 SM00387 Histidine kinase-like ATPases YPD4_1691 SM00388 His Kinase A (phosphoacceptor) domain YPD4_1691 SM00448 cheY-homologous receiver domain YPD4_1692 SM00421 helix_turn_helix, Lux Regulon YPD4_1692 SM00448 cheY-homologous receiver domain YPD4_1705 SM00420 helix_turn_helix, Deoxyribose operon repressor YPD4_1705 SM01134 YPD4_1705 YPD4_1713 SM00382 ATPases associated with a variety of cellular activities YPD4_1725 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPD4_1725 SM00387 Histidine kinase-like ATPases YPD4_1726 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPD4_1734 SM00382 ATPases associated with a variety of cellular activities YPD4_1737 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPD4_1737 SM00866 YPD4_1737 YPD4_1753 SM00671 Sel1-like repeats. YPD4_1754 SM00671 Sel1-like repeats. YPD4_1764 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPD4_1764 SM00387 Histidine kinase-like ATPases YPD4_1764 SM00388 His Kinase A (phosphoacceptor) domain YPD4_1765 SM00448 cheY-homologous receiver domain YPD4_1765 SM00862 Transcriptional regulatory protein, C terminal YPD4_1772 SM00450 Rhodanese Homology Domain YPD4_1776 SM01400 YPD4_1776 YPD4_1780 SM00937 YPD4_1780 YPD4_1792 SM01321 YPD4_1792 YPD4_1796 SM00481 DNA polymerase alpha chain like domain YPD4_1805 SM00912 haemagglutination activity domain YPD4_1806 SM00836 DALR anticodon binding domain YPD4_1806 SM01016 Arginyl tRNA synthetase N terminal dom YPD4_1817 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YPD4_1818 SM00382 ATPases associated with a variety of cellular activities YPD4_1820 SM00382 ATPases associated with a variety of cellular activities YPD4_1822 SM00257 Lysin motif YPD4_1831 SM00487 DEAD-like helicases superfamily YPD4_1831 SM00491 YPD4_1831 YPD4_1835 SM00341 Helicase and RNase D C-terminal YPD4_1835 SM00474 3'-5' exonuclease YPD4_1843 SM00382 ATPases associated with a variety of cellular activities YPD4_1847 SM01040 BRO family, N-terminal domain YPD4_1860 SM00635 Bacterial Ig-like domain 2 YPD4_1865 SM00635 Bacterial Ig-like domain 2 YPD4_1869 SM01321 YPD4_1869 YPD4_1871 SM00232 JAB/MPN domain YPD4_1873 SM01040 BRO family, N-terminal domain YPD4_1874 SM00060 Fibronectin type 3 domain YPD4_1885 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPD4_1893 SM00763 PrkA AAA domain YPD4_1896 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPD4_1900 SM00870 YPD4_1900 YPD4_1904 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain YPD4_1904 SM00437 Bacterial DNA topoisomerase I DNA-binding domain YPD4_1904 SM00493 YPD4_1904 YPD4_1911 SM00448 cheY-homologous receiver domain YPD4_1912 SM00984 UDP binding domain YPD4_1913 SM00528 Domain in histone-like proteins of HNS family YPD4_1915 SM00382 ATPases associated with a variety of cellular activities YPD4_1923 SM00382 ATPases associated with a variety of cellular activities YPD4_1924 SM00382 ATPases associated with a variety of cellular activities YPD4_1926 SM00155 Phospholipase D. Active site motifs. YPD4_1936 SM00749 bacterial OsmY and nodulation domain YPD4_1943 SM00481 DNA polymerase alpha chain like domain YPD4_1945 SM00363 S4 RNA-binding domain YPD4_1947 SM00822 YPD4_1947 YPD4_1949 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain YPD4_1949 SM00437 Bacterial DNA topoisomerase I DNA-binding domain YPD4_1949 SM00493 YPD4_1949 YPD4_1954 SM00014 Acid phosphatase homologues YPD4_1956 SM00028 Tetratricopeptide repeats YPD4_1957 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family YPD4_1959 SM01007 Class II Aldolase and Adducin N-terminal domain YPD4_1963 SM00357 Cold shock protein domain YPD4_1963 SM00955 YPD4_1963 YPD4_1966 SM00478 endonuclease III YPD4_1966 SM00525 YPD4_1966 YPD4_1968 SM00900 YPD4_1968 YPD4_1970 SM00342 helix_turn_helix, arabinose operon control protein YPD4_1978 SM00382 ATPases associated with a variety of cellular activities YPD4_1982 SM00382 ATPases associated with a variety of cellular activities YPD4_1984 SM00342 helix_turn_helix, arabinose operon control protein YPD4_1997 SM00354 helix_turn _helix lactose operon repressor YPD4_2012 SM00098 Alkaline phosphatase homologues YPD4_2014 SM00100 Cyclic nucleotide-monophosphate binding domain YPD4_2014 SM00419 helix_turn_helix, cAMP Regulatory protein YPD4_2017 SM01002 Alanine dehydrogenase/PNT, C-terminal domain YPD4_2017 SM01003 Alanine dehydrogenase/PNT, N-terminal domain YPD4_2021 SM00448 cheY-homologous receiver domain YPD4_2021 SM00862 Transcriptional regulatory protein, C terminal YPD4_2022 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPD4_2022 SM00387 Histidine kinase-like ATPases YPD4_2022 SM00388 His Kinase A (phosphoacceptor) domain YPD4_2024 SM01321 YPD4_2024 YPD4_2027 SM00867 YceI-like domain YPD4_2029 SM00020 Trypsin-like serine protease YPD4_2030 SM00530 Helix-turn-helix XRE-family like proteins YPD4_2032 SM00382 ATPases associated with a variety of cellular activities YPD4_2032 SM00487 DEAD-like helicases superfamily YPD4_2032 SM00490 helicase superfamily c-terminal domain YPD4_2032 SM00847 Helicase associated domain (HA2) Add an annotation YPD4_2043 SM00890 Domain of unknown function YPD4_2046 SM00422 helix_turn_helix, mercury resistance YPD4_2050 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YPD4_2052 SM00382 ATPases associated with a variety of cellular activities YPD4_2054 SM01005 Alanine racemase, C-terminal domain YPD4_2058 SM00644 YPD4_2058 YPD4_2060 SM00448 cheY-homologous receiver domain YPD4_2061 SM00448 cheY-homologous receiver domain YPD4_2062 SM00138 Methyltransferase, chemotaxis proteins YPD4_2063 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPD4_2063 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPD4_2063 SM00319 Homologues of the ligand binding domain of Tar YPD4_2064 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPD4_2064 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPD4_2064 SM00319 Homologues of the ligand binding domain of Tar YPD4_2067 SM00869 Autotransporter beta-domain YPD4_2072 SM00260 Two component signalling adaptor domain YPD4_2073 SM00073 Histidine Phosphotransfer domain YPD4_2073 SM00260 Two component signalling adaptor domain YPD4_2073 SM00387 Histidine kinase-like ATPases YPD4_2073 SM01231 YPD4_2073 YPD4_2078 SM00831 Cation transporter/ATPase, N-terminus YPD4_2080 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPD4_2080 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPD4_2080 SM00319 Homologues of the ligand binding domain of Tar YPD4_2082 SM01038 Beta galactosidase small chain YPD4_2083 SM00829 Enoylreductase YPD4_2085 SM00344 helix_turn_helix ASNC type YPD4_2090 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YPD4_2090 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPD4_2091 SM00354 helix_turn _helix lactose operon repressor YPD4_2092 SM01329 YPD4_2092 YPD4_2099 SM00448 cheY-homologous receiver domain YPD4_2099 SM00862 Transcriptional regulatory protein, C terminal YPD4_2100 SM00387 Histidine kinase-like ATPases YPD4_2100 SM00388 His Kinase A (phosphoacceptor) domain YPD4_2101 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. YPD4_2106 SM00382 ATPases associated with a variety of cellular activities YPD4_2108 SM00487 DEAD-like helicases superfamily YPD4_2108 SM00490 helicase superfamily c-terminal domain YPD4_2108 SM00982 YPD4_2108 YPD4_2108 SM01058 CarD-like/TRCF domain YPD4_2121 SM01321 YPD4_2121 YPD4_2128 SM01321 YPD4_2128 YPD4_2129 SM00825 Beta-ketoacyl synthase YPD4_2131 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YPD4_2136 SM01321 YPD4_2136 YPD4_2137 SM00363 S4 RNA-binding domain YPD4_2138 SM00316 Ribosomal protein S1-like RNA-binding domain YPD4_2143 SM00421 helix_turn_helix, Lux Regulon YPD4_2145 SM00450 Rhodanese Homology Domain YPD4_2148 SM00421 helix_turn_helix, Lux Regulon YPD4_2167 SM00354 helix_turn _helix lactose operon repressor YPD4_2169 SM00382 ATPases associated with a variety of cellular activities YPD4_2176 SM00912 haemagglutination activity domain YPD4_2181 SM01329 YPD4_2181 YPD4_2183 SM00354 helix_turn _helix lactose operon repressor YPD4_2185 SM00382 ATPases associated with a variety of cellular activities YPD4_2187 SM00829 Enoylreductase YPD4_2197 SM00062 Bacterial periplasmic substrate-binding proteins YPD4_2197 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPD4_2199 SM00382 ATPases associated with a variety of cellular activities YPD4_2200 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YPD4_2200 SM00091 PAS domain YPD4_2200 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPD4_2202 SM00382 ATPases associated with a variety of cellular activities YPD4_2205 SM00195 Dual specificity phosphatase, catalytic domain YPD4_2205 SM00404 Protein tyrosine phosphatase, catalytic domain motif YPD4_2207 SM00563 Phosphate acyltransferases YPD4_2212 SM01321 YPD4_2212 YPD4_2219 SM00382 ATPases associated with a variety of cellular activities YPD4_2224 SM00924 MgtE intracellular N domain YPD4_2231 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPD4_2232 SM00382 ATPases associated with a variety of cellular activities YPD4_2237 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPD4_2237 SM00388 His Kinase A (phosphoacceptor) domain YPD4_2238 SM00448 cheY-homologous receiver domain YPD4_2238 SM00862 Transcriptional regulatory protein, C terminal YPD4_2241 SM00046 Diacylglycerol kinase catalytic domain (presumed) YPD4_2251 SM01321 YPD4_2251 YPD4_2253 SM00116 Domain in cystathionine beta-synthase and other proteins. YPD4_2253 SM01240 YPD4_2253 YPD4_2257 SM00564 beta-propeller repeat YPD4_2261 SM00530 Helix-turn-helix XRE-family like proteins YPD4_2264 SM00562 YPD4_2264 YPD4_2265 SM00247 Beta/gamma crystallins YPD4_2266 SM00869 Autotransporter beta-domain YPD4_2273 SM00271 DnaJ molecular chaperone homology domain YPD4_2281 SM01321 YPD4_2281 YPD4_2292 SM00938 Nitrogen regulatory protein P-II YPD4_2294 SM00382 ATPases associated with a variety of cellular activities YPD4_2294 SM00448 cheY-homologous receiver domain YPD4_2296 SM00387 Histidine kinase-like ATPases YPD4_2296 SM00388 His Kinase A (phosphoacceptor) domain YPD4_2297 SM01321 YPD4_2297 YPD4_2300 SM01211 YPD4_2300 YPD4_2301 SM00062 Bacterial periplasmic substrate-binding proteins YPD4_2306 SM01321 YPD4_2306 YPD4_2309 SM00382 ATPases associated with a variety of cellular activities YPD4_2313 SM00358 Double-stranded RNA binding motif YPD4_2313 SM00535 Ribonuclease III family YPD4_2323 SM00487 DEAD-like helicases superfamily YPD4_2323 SM00490 helicase superfamily c-terminal domain YPD4_2324 SM00248 ankyrin repeats YPD4_2327 SM00986 Uracil DNA glycosylase superfamily YPD4_2327 SM00987 UreE urease accessory protein, C-terminal domain YPD4_2332 SM00797 Allophanate hydrolase subunit 2 YPD4_2333 SM00796 Allophanate hydrolase subunit 1 YPD4_2341 SM00387 Histidine kinase-like ATPases YPD4_2341 SM00388 His Kinase A (phosphoacceptor) domain YPD4_2342 SM00448 cheY-homologous receiver domain YPD4_2342 SM00862 Transcriptional regulatory protein, C terminal YPD4_2347 SM00342 helix_turn_helix, arabinose operon control protein YPD4_2360 SM00988 UreE urease accessory protein, N-terminal domain YPD4_2364 SM00382 ATPases associated with a variety of cellular activities YPD4_2365 SM00382 ATPases associated with a variety of cellular activities YPD4_2377 SM00382 ATPases associated with a variety of cellular activities YPD4_2382 SM00382 ATPases associated with a variety of cellular activities YPD4_2388 SM01081 Putative carbohydrate binding domain YPD4_2391 SM01321 YPD4_2391 YPD4_2400 SM00729 Elongator protein 3, MiaB family, Radical SAM YPD4_2403 SM00116 Domain in cystathionine beta-synthase and other proteins. YPD4_2403 SM01091 Transporter associated domain YPD4_2405 SM00062 Bacterial periplasmic substrate-binding proteins YPD4_2408 SM00382 ATPases associated with a variety of cellular activities YPD4_2420 SM00936 Penicillin-binding protein 5, C-terminal domain YPD4_2422 SM00729 Elongator protein 3, MiaB family, Radical SAM YPD4_2425 SM00421 helix_turn_helix, Lux Regulon YPD4_2427 SM00382 ATPases associated with a variety of cellular activities YPD4_2434 SM00382 ATPases associated with a variety of cellular activities YPD4_2442 SM01359 YPD4_2442 YPD4_2442 SM01360 YPD4_2442 YPD4_2446 SM00354 helix_turn _helix lactose operon repressor YPD4_2453 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPD4_2460 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YPD4_2461 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPD4_2461 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YPD4_2474 SM00354 helix_turn _helix lactose operon repressor YPD4_2485 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YPD4_2489 SM00382 ATPases associated with a variety of cellular activities YPD4_2495 SM01217 YPD4_2495 YPD4_2501 SM00869 Autotransporter beta-domain YPD4_2511 SM00052 Putative diguanylate phosphodiesterase YPD4_2513 SM00382 ATPases associated with a variety of cellular activities YPD4_2516 SM00062 Bacterial periplasmic substrate-binding proteins YPD4_2525 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPD4_2527 SM00342 helix_turn_helix, arabinose operon control protein YPD4_2532 SM00825 Beta-ketoacyl synthase YPD4_2540 SM00463 Small MutS-related domain YPD4_2541 SM00855 Phosphoglycerate mutase family YPD4_2554 SM00382 ATPases associated with a variety of cellular activities YPD4_2566 SM00382 ATPases associated with a variety of cellular activities YPD4_2580 SM00382 ATPases associated with a variety of cellular activities YPD4_2580 SM01086 C-terminal, D2-small domain, of ClpB protein YPD4_2589 SM00421 helix_turn_helix, Lux Regulon YPD4_2593 SM00382 ATPases associated with a variety of cellular activities YPD4_2596 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPD4_2616 SM01321 YPD4_2616 YPD4_2619 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YPD4_2619 SM00292 breast cancer carboxy-terminal domain YPD4_2619 SM00532 Ligase N family YPD4_2620 SM00771 ZipA, C-terminal domain (FtsZ-binding) YPD4_2625 SM01321 YPD4_2625 YPD4_2626 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPD4_2626 SM00387 Histidine kinase-like ATPases YPD4_2626 SM00388 His Kinase A (phosphoacceptor) domain YPD4_2627 SM00448 cheY-homologous receiver domain YPD4_2627 SM00862 Transcriptional regulatory protein, C terminal YPD4_2629 SM00382 ATPases associated with a variety of cellular activities YPD4_2630 SM00450 Rhodanese Homology Domain YPD4_2634 SM00327 von Willebrand factor (vWF) type A domain YPD4_2635 SM00387 Histidine kinase-like ATPases YPD4_2635 SM00388 His Kinase A (phosphoacceptor) domain YPD4_2636 SM00448 cheY-homologous receiver domain YPD4_2636 SM00862 Transcriptional regulatory protein, C terminal YPD4_2639 SM00382 ATPases associated with a variety of cellular activities YPD4_2647 SM00364 Leucine-rich repeats, bacterial type YPD4_2650 SM01130 YPD4_2650 YPD4_2654 SM00869 Autotransporter beta-domain YPD4_2659 SM00919 Malic enzyme, NAD binding domain YPD4_2659 SM01274 YPD4_2659 YPD4_2663 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPD4_2665 SM00421 helix_turn_helix, Lux Regulon YPD4_2665 SM00448 cheY-homologous receiver domain YPD4_2671 SM00382 ATPases associated with a variety of cellular activities YPD4_2683 SM01321 YPD4_2683 YPD4_2685 SM01130 YPD4_2685 YPD4_2693 SM01321 YPD4_2693 YPD4_2694 SM00840 YPD4_2694 YPD4_2697 SM01001 AIR carboxylase YPD4_2701 SM00382 ATPases associated with a variety of cellular activities YPD4_2703 SM00822 YPD4_2703 YPD4_2705 SM00244 prohibitin homologues YPD4_2707 SM00422 helix_turn_helix, mercury resistance YPD4_2736 SM00387 Histidine kinase-like ATPases YPD4_2737 SM00493 YPD4_2737 YPD4_2739 SM00382 ATPases associated with a variety of cellular activities YPD4_2754 SM00938 Nitrogen regulatory protein P-II YPD4_2755 SM00382 ATPases associated with a variety of cellular activities YPD4_2756 SM00382 ATPases associated with a variety of cellular activities YPD4_2757 SM00344 helix_turn_helix ASNC type YPD4_2766 SM00382 ATPases associated with a variety of cellular activities YPD4_2766 SM00464 Found in ATP-dependent protease La (LON) YPD4_2767 SM00382 ATPases associated with a variety of cellular activities YPD4_2767 SM00994 ClpX C4-type zinc finger YPD4_2767 SM01086 C-terminal, D2-small domain, of ClpB protein YPD4_2783 SM00981 YPD4_2783 YPD4_2785 SM00861 Transketolase, pyrimidine binding domain YPD4_2786 SM01321 YPD4_2786 YPD4_2797 SM01323 YPD4_2797 YPD4_2804 SM00642 Alpha-amylase domain YPD4_2808 SM00091 PAS domain YPD4_2808 SM00387 Histidine kinase-like ATPases YPD4_2808 SM00388 His Kinase A (phosphoacceptor) domain YPD4_2809 SM00448 cheY-homologous receiver domain YPD4_2809 SM00862 Transcriptional regulatory protein, C terminal YPD4_2819 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase YPD4_2823 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins YPD4_2832 SM00900 YPD4_2832 YPD4_2841 SM00710 Parallel beta-helix repeats YPD4_2841 SM00912 haemagglutination activity domain YPD4_2846 SM00382 ATPases associated with a variety of cellular activities YPD4_2848 SM00382 ATPases associated with a variety of cellular activities YPD4_2851 SM00062 Bacterial periplasmic substrate-binding proteins YPD4_2858 SM00347 helix_turn_helix multiple antibiotic resistance protein YPD4_2862 SM00967 RNA 2'-O ribose methyltransferase substrate binding YPD4_2863 SM01144 YPD4_2863 YPD4_2864 SM00881 CoA binding domain YPD4_2865 SM00155 Phospholipase D. Active site motifs. YPD4_2868 SM00382 ATPases associated with a variety of cellular activities YPD4_2868 SM01086 C-terminal, D2-small domain, of ClpB protein YPD4_2871 SM00363 S4 RNA-binding domain YPD4_2874 SM01321 YPD4_2874 YPD4_2875 SM00830 Chorismate mutase type II YPD4_2876 SM00830 Chorismate mutase type II YPD4_2879 SM00448 cheY-homologous receiver domain YPD4_2879 SM00850 LytTr DNA-binding domain YPD4_2883 SM01321 YPD4_2883 YPD4_2887 SM00382 ATPases associated with a variety of cellular activities YPD4_2887 SM00962 SRP54-type protein, GTPase domain YPD4_2887 SM00963 SRP54-type protein, helical bundle domain YPD4_2889 SM01091 Transporter associated domain YPD4_2890 SM01321 YPD4_2890 YPD4_2895 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain YPD4_2897 SM00382 ATPases associated with a variety of cellular activities YPD4_2903 SM00861 Transketolase, pyrimidine binding domain YPD4_2906 SM00382 ATPases associated with a variety of cellular activities YPD4_2914 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPD4_2915 SM01007 Class II Aldolase and Adducin N-terminal domain YPD4_2916 SM00420 helix_turn_helix, Deoxyribose operon repressor YPD4_2916 SM01134 YPD4_2916 YPD4_2918 SM00382 ATPases associated with a variety of cellular activities YPD4_2930 SM00062 Bacterial periplasmic substrate-binding proteins YPD4_2931 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor YPD4_2934 SM01120 YPD4_2934 YPD4_2937 SM00829 Enoylreductase YPD4_2939 SM00533 DNA-binding domain of DNA mismatch repair MUTS family YPD4_2939 SM00534 ATPase domain of DNA mismatch repair MUTS family YPD4_2941 SM00257 Lysin motif YPD4_2960 SM01192 YPD4_2960 YPD4_2960 SM01193 YPD4_2960 YPD4_2963 SM00954 Region found in RelA / SpoT proteins YPD4_2964 SM00073 Histidine Phosphotransfer domain YPD4_2964 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPD4_2964 SM00387 Histidine kinase-like ATPases YPD4_2964 SM00388 His Kinase A (phosphoacceptor) domain YPD4_2964 SM00448 cheY-homologous receiver domain YPD4_2965 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPD4_2967 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPD4_2976 SM00382 ATPases associated with a variety of cellular activities YPD4_2978 SM00487 DEAD-like helicases superfamily YPD4_2978 SM00490 helicase superfamily c-terminal domain YPD4_2978 SM00847 Helicase associated domain (HA2) Add an annotation YPD4_2990 SM00382 ATPases associated with a variety of cellular activities YPD4_2991 SM00947 Carbonic anhydrase YPD4_3000 SM01321 YPD4_3000 YPD4_3004 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPD4_3004 SM00895 YPD4_3004 YPD4_3007 SM00644 YPD4_3007 YPD4_3012 SM01240 YPD4_3012 YPD4_3015 SM01321 YPD4_3015 YPD4_3017 SM00382 ATPases associated with a variety of cellular activities YPD4_3035 SM00382 ATPases associated with a variety of cellular activities YPD4_3036 SM00382 ATPases associated with a variety of cellular activities YPD4_3039 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPD4_3039 SM00866 YPD4_3039 YPD4_3044 SM00382 ATPases associated with a variety of cellular activities YPD4_3045 SM00382 ATPases associated with a variety of cellular activities YPD4_3047 SM00072 Guanylate kinase homologues. YPD4_3048 SM00849 Metallo-beta-lactamase superfamily YPD4_3049 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPD4_3052 SM00382 ATPases associated with a variety of cellular activities YPD4_3066 SM00530 Helix-turn-helix XRE-family like proteins YPD4_3067 SM00487 DEAD-like helicases superfamily YPD4_3067 SM00490 helicase superfamily c-terminal domain YPD4_3068 SM00028 Tetratricopeptide repeats YPD4_3069 SM00316 Ribosomal protein S1-like RNA-binding domain YPD4_3069 SM00322 K homology RNA-binding domain YPD4_3078 SM00382 ATPases associated with a variety of cellular activities YPD4_3078 SM01086 C-terminal, D2-small domain, of ClpB protein YPD4_3089 SM00860 SMI1 / KNR4 family YPD4_3090 SM00530 Helix-turn-helix XRE-family like proteins YPD4_3097 SM00342 helix_turn_helix, arabinose operon control protein YPD4_3100 SM01133 YPD4_3100 YPD4_3102 SM00062 Bacterial periplasmic substrate-binding proteins YPD4_3105 SM00382 ATPases associated with a variety of cellular activities YPD4_3111 SM00382 ATPases associated with a variety of cellular activities YPD4_3119 SM01321 YPD4_3119 YPD4_3121 SM00849 Metallo-beta-lactamase superfamily YPD4_3126 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPD4_3126 SM00895 YPD4_3126 YPD4_3131 SM00878 Biotin carboxylase C-terminal domain YPD4_3136 SM00829 Enoylreductase YPD4_3137 SM00052 Putative diguanylate phosphodiesterase YPD4_3137 SM00267 diguanylate cyclase YPD4_3142 SM00316 Ribosomal protein S1-like RNA-binding domain YPD4_3167 SM00642 Alpha-amylase domain YPD4_3169 SM00354 helix_turn _helix lactose operon repressor YPD4_3177 SM00382 ATPases associated with a variety of cellular activities YPD4_3181 SM00116 Domain in cystathionine beta-synthase and other proteins. YPD4_3183 SM00382 ATPases associated with a variety of cellular activities YPD4_3189 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPD4_3190 SM01321 YPD4_3190 YPD4_3191 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPD4_3201 SM00729 Elongator protein 3, MiaB family, Radical SAM YPD4_3202 SM00073 Histidine Phosphotransfer domain YPD4_3202 SM00091 PAS domain YPD4_3202 SM00387 Histidine kinase-like ATPases YPD4_3202 SM00388 His Kinase A (phosphoacceptor) domain YPD4_3202 SM00448 cheY-homologous receiver domain YPD4_3205 SM00749 bacterial OsmY and nodulation domain YPD4_3219 SM01321 YPD4_3219 YPD4_3228 SM00116 Domain in cystathionine beta-synthase and other proteins. YPD4_3228 SM01091 Transporter associated domain YPD4_3243 SM00387 Histidine kinase-like ATPases YPD4_3243 SM00388 His Kinase A (phosphoacceptor) domain YPD4_3244 SM00448 cheY-homologous receiver domain YPD4_3244 SM00862 Transcriptional regulatory protein, C terminal YPD4_3247 SM01103 YPD4_3247 YPD4_3249 SM00382 ATPases associated with a variety of cellular activities YPD4_3253 SM00316 Ribosomal protein S1-like RNA-binding domain YPD4_3253 SM00322 K homology RNA-binding domain YPD4_3265 SM00382 ATPases associated with a variety of cellular activities YPD4_3274 SM00912 haemagglutination activity domain YPD4_3275 SM01018 B12 binding domain YPD4_3276 SM00346 helix_turn_helix isocitrate lyase regulation YPD4_3282 SM00798 AICARFT/IMPCHase bienzyme YPD4_3283 SM01209 YPD4_3283 YPD4_3283 SM01210 YPD4_3283 YPD4_3295 SM00876 Biotin and Thiamin Synthesis associated domain YPD4_3296 SM01321 YPD4_3296 YPD4_3297 SM00663 RNA polymerase I subunit A N-terminus YPD4_3302 SM00649 Ribosomal protein L11/L12 YPD4_3303 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. YPD4_3303 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YPD4_3305 SM00382 ATPases associated with a variety of cellular activities YPD4_3313 SM01321 YPD4_3313 YPD4_3319 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. YPD4_3319 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YPD4_3320 SM01004 Delta-aminolevulinic acid dehydratase YPD4_3322 SM00382 ATPases associated with a variety of cellular activities YPD4_3340 SM00382 ATPases associated with a variety of cellular activities YPD4_3351 SM00382 ATPases associated with a variety of cellular activities YPD4_3352 SM00382 ATPases associated with a variety of cellular activities YPD4_3357 SM01321 YPD4_3357 YPD4_3360 SM00382 ATPases associated with a variety of cellular activities YPD4_3361 SM00382 ATPases associated with a variety of cellular activities YPD4_3361 SM00962 SRP54-type protein, GTPase domain YPD4_3361 SM00963 SRP54-type protein, helical bundle domain YPD4_3379 SM00341 Helicase and RNase D C-terminal YPD4_3379 SM00487 DEAD-like helicases superfamily YPD4_3379 SM00490 helicase superfamily c-terminal domain YPD4_3379 SM00956 YPD4_3379 YPD4_3393 SM01219 YPD4_3393 YPD4_3399 SM01321 YPD4_3399 YPD4_3409 SM00984 UDP binding domain YPD4_3413 SM00357 Cold shock protein domain YPD4_3413 SM00382 ATPases associated with a variety of cellular activities YPD4_3413 SM00959 Rho termination factor, N-terminal domain YPD4_3415 SM00487 DEAD-like helicases superfamily YPD4_3415 SM00490 helicase superfamily c-terminal domain YPD4_3436 SM00382 ATPases associated with a variety of cellular activities YPD4_3441 SM00382 ATPases associated with a variety of cellular activities YPD4_3454 SM00382 ATPases associated with a variety of cellular activities YPD4_3459 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPD4_3469 SM00642 Alpha-amylase domain YPD4_3470 SM00642 Alpha-amylase domain YPD4_3472 SM00257 Lysin motif YPD4_3472 SM00634 Bacterial Ig-like domain (group 1) YPD4_3473 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPD4_3478 SM00354 helix_turn _helix lactose operon repressor YPD4_3480 SM00448 cheY-homologous receiver domain YPD4_3480 SM00862 Transcriptional regulatory protein, C terminal YPD4_3486 SM00382 ATPases associated with a variety of cellular activities YPD4_3487 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPD4_3487 SM00387 Histidine kinase-like ATPases YPD4_3487 SM00388 His Kinase A (phosphoacceptor) domain YPD4_3487 SM00448 cheY-homologous receiver domain YPD4_3490 SM01321 YPD4_3490 YPD4_3493 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YPD4_3494 SM00235 Zinc-dependent metalloprotease YPD4_3505 SM00869 Autotransporter beta-domain YPD4_3509 SM00052 Putative diguanylate phosphodiesterase YPD4_3516 SM00052 Putative diguanylate phosphodiesterase YPD4_3516 SM00267 diguanylate cyclase YPD4_3518 SM00382 ATPases associated with a variety of cellular activities YPD4_3519 SM00382 ATPases associated with a variety of cellular activities YPD4_3526 SM00387 Histidine kinase-like ATPases YPD4_3527 SM00382 ATPases associated with a variety of cellular activities YPD4_3530 SM00421 helix_turn_helix, Lux Regulon YPD4_3530 SM00448 cheY-homologous receiver domain YPD4_3543 SM00382 ATPases associated with a variety of cellular activities YPD4_3545 SM00530 Helix-turn-helix XRE-family like proteins YPD4_3548 SM00342 helix_turn_helix, arabinose operon control protein YPD4_3550 SM00382 ATPases associated with a variety of cellular activities YPD4_3572 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPD4_3575 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPD4_3575 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPD4_3575 SM01358 YPD4_3575 YPD4_3591 SM00642 Alpha-amylase domain YPD4_3605 SM00387 Histidine kinase-like ATPases YPD4_3605 SM00433 TopoisomeraseII YPD4_3607 SM00480 DNA polymerase III beta subunit YPD4_3608 SM00760 Bacterial dnaA protein helix-turn-helix domain YPD4_3618 SM00062 Bacterial periplasmic substrate-binding proteins YPD4_3621 SM00382 ATPases associated with a variety of cellular activities YPD4_3628 SM00382 ATPases associated with a variety of cellular activities YPD4_3636 SM01228 YPD4_3636 YPD4_pCD0005 SM00470 ParB-like nuclease domain YPD4_pCD0015 SM00364 Leucine-rich repeats, bacterial type YPD4_pCD0027 SM00382 ATPases associated with a variety of cellular activities YPD4_pCD0035 SM00342 helix_turn_helix, arabinose operon control protein YPD4_pCD0049 SM00194 Protein tyrosine phosphatase, catalytic domain YPD4_pCD0049 SM00404 Protein tyrosine phosphatase, catalytic domain motif YPD4_pCD0052 SM00220 Serine/Threonine protein kinases, catalytic domain YPD4_pCD0061 SM00857 Resolvase, N terminal domain YPD4_pMT0002 SM00382 ATPases associated with a variety of cellular activities YPD4_pMT0008 SM00232 JAB/MPN domain YPD4_pMT0013 SM00635 Bacterial Ig-like domain 2 YPD4_pMT0019 SM00635 Bacterial Ig-like domain 2 YPD4_pMT0026 SM00382 ATPases associated with a variety of cellular activities YPD4_pMT0027 SM00470 ParB-like nuclease domain YPD4_pMT0028 SM00470 ParB-like nuclease domain YPD4_pMT0029 SM00487 DEAD-like helicases superfamily YPD4_pMT0029 SM00490 helicase superfamily c-terminal domain YPD4_pMT0034 SM01321 YPD4_pMT0034 YPD4_pMT0039 SM00062 Bacterial periplasmic substrate-binding proteins YPD4_pMT0045 SM00244 prohibitin homologues YPD4_pMT0047 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YPD4_pMT0047 SM00475 5'-3' exonuclease YPD4_pMT0052 SM00481 DNA polymerase alpha chain like domain YPD4_pMT0060 SM00342 helix_turn_helix, arabinose operon control protein YPD4_pMT0065 SM00155 Phospholipase D. Active site motifs. YPD4_pMT0068 SM00857 Resolvase, N terminal domain YPD4_pMT0070 SM00470 ParB-like nuclease domain YPD4_pMT0071 SM00382 ATPases associated with a variety of cellular activities YPD4_pMT0076 SM00470 ParB-like nuclease domain YPD4_pPCP0002 SM00382 ATPases associated with a variety of cellular activities YPD4_pPCP0008 SM00530 Helix-turn-helix XRE-family like proteins