locus-tag class description YPD8_0001 PF00258 Flavodoxin YPD8_0002 PF01037 Lrp/AsnC ligand binding domain YPD8_0003 PF03590 Aspartate-ammonia ligase YPD8_0004 PF05762 VWA domain containing CoxE-like protein YPD8_0005 PF17868 AAA lid domain YPD8_0005 PF12592 Protein of unknown function (DUF3763) YPD8_0005 PF07728 AAA domain (dynein-related subfamily) YPD8_0006 PF02705 K+ potassium transporter YPD8_0007 PF05025 RbsD / FucU transport protein family YPD8_0008 PF00294 pfkB family carbohydrate kinase YPD8_0009 PF07690 Major Facilitator Superfamily YPD8_0010 PF00392 Bacterial regulatory proteins, gntR family YPD8_0010 PF07729 FCD domain YPD8_0011 PF00872 Transposase, Mutator family YPD8_0012 PF00872 Transposase, Mutator family YPD8_0013 PF03205 Molybdopterin guanine dinucleotide synthesis protein B YPD8_0014 PF12804 MobA-like NTP transferase domain YPD8_0015 PF01636 Phosphotransferase enzyme family YPD8_0016 PF01323 DSBA-like thioredoxin domain YPD8_0017 PF01367 5'-3' exonuclease, C-terminal SAM fold YPD8_0017 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPD8_0017 PF00476 DNA polymerase family A YPD8_0017 PF01612 3'-5' exonuclease YPD8_0018 PF00476 DNA polymerase family A YPD8_0018 PF01612 3'-5' exonuclease YPD8_0018 PF01367 5'-3' exonuclease, C-terminal SAM fold YPD8_0018 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPD8_0019 PF01797 Transposase IS200 like YPD8_0020 PF01926 50S ribosome-binding GTPase YPD8_0021 PF04220 Der GTPase activator (YihI) YPD8_0022 PF04055 Radical SAM superfamily YPD8_0022 PF06969 HemN C-terminal domain YPD8_0023 PF02954 Bacterial regulatory protein, Fis family YPD8_0023 PF00072 Response regulator receiver domain YPD8_0023 PF00158 Sigma-54 interaction domain YPD8_0024 PF00512 His Kinase A (phospho-acceptor) domain YPD8_0024 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_0024 PF00989 PAS fold YPD8_0025 PF03951 Glutamine synthetase, beta-Grasp domain YPD8_0025 PF00120 Glutamine synthetase, catalytic domain YPD8_0027 PF13419 Haloacid dehalogenase-like hydrolase YPD8_0028 PF03631 Virulence factor BrkB YPD8_0029 PF02580 D-Tyr-tRNA(Tyr) deacylase YPD8_0030 PF01695 IstB-like ATP binding protein YPD8_0031 PF00665 Integrase core domain YPD8_0031 PF02796 Helix-turn-helix domain of resolvase YPD8_0032 PF00583 Acetyltransferase (GNAT) family YPD8_0032 PF09500 Putative thioesterase (yiiD_Cterm) YPD8_0033 PF05170 AsmA family YPD8_0034 PF00860 Permease family YPD8_0035 PF03616 Sodium/glutamate symporter YPD8_0036 PF00271 Helicase conserved C-terminal domain YPD8_0036 PF00270 DEAD/DEAH box helicase YPD8_0036 PF17191 RecG wedge domain YPD8_0037 PF00588 SpoU rRNA Methylase family YPD8_0037 PF12105 SpoU, rRNA methylase, C-terminal YPD8_0038 PF13291 ACT domain YPD8_0038 PF04607 Region found in RelA / SpoT proteins YPD8_0038 PF02824 TGS domain YPD8_0039 PF00625 Guanylate kinase YPD8_0040 PF03120 NAD-dependent DNA ligase OB-fold domain YPD8_0040 PF01653 NAD-dependent DNA ligase adenylation domain YPD8_0041 PF03458 UPF0126 domain YPD8_0042 PF08340 Domain of unknown function (DUF1732) YPD8_0042 PF03755 YicC-like family, N-terminal region YPD8_0043 PF01138 3' exoribonuclease family, domain 1 YPD8_0043 PF03725 3' exoribonuclease family, domain 2 YPD8_0044 PF00156 Phosphoribosyl transferase domain YPD8_0045 PF00440 Bacterial regulatory proteins, tetR family YPD8_0046 PF00692 dUTPase YPD8_0047 PF02441 Flavoprotein YPD8_0047 PF04127 DNA / pantothenate metabolism flavoprotein YPD8_0048 PF04127 DNA / pantothenate metabolism flavoprotein YPD8_0048 PF02441 Flavoprotein YPD8_0049 PF04002 RadC-like JAB domain YPD8_0050 PF06827 Zinc finger found in FPG and IleRS YPD8_0050 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain YPD8_0050 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain YPD8_0051 PF01467 Cytidylyltransferase-like YPD8_0052 PF00535 Glycosyl transferase family 2 YPD8_0053 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YPD8_0054 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPD8_0055 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPD8_0056 PF01370 NAD dependent epimerase/dehydratase family YPD8_0057 PF00155 Aminotransferase class I and II YPD8_0058 PF00107 Zinc-binding dehydrogenase YPD8_0058 PF08240 Alcohol dehydrogenase GroES-like domain YPD8_0059 PF04748 Divergent polysaccharide deacetylase YPD8_0060 PF04748 Divergent polysaccharide deacetylase YPD8_0061 PF01551 Peptidase family M23 YPD8_0062 PF01676 Metalloenzyme superfamily YPD8_0062 PF06415 BPG-independent PGAM N-terminus (iPGM_N) YPD8_0063 PF00581 Rhodanese-like domain YPD8_0064 PF02556 Preprotein translocase subunit SecB YPD8_0065 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus YPD8_0065 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YPD8_0066 PF00132 Bacterial transferase hexapeptide (six repeats) YPD8_0066 PF06426 Serine acetyltransferase, N-terminal YPD8_0067 PF00588 SpoU rRNA Methylase family YPD8_0068 PF12833 Helix-turn-helix domain YPD8_0068 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPD8_0068 PF02805 Metal binding domain of Ada YPD8_0068 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPD8_0069 PF00512 His Kinase A (phospho-acceptor) domain YPD8_0069 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_0069 PF00672 HAMP domain YPD8_0069 PF16527 Two-component sensor protein CpxA, periplasmic domain YPD8_0070 PF00072 Response regulator receiver domain YPD8_0070 PF00486 Transcriptional regulatory protein, C terminal YPD8_0071 PF07813 LTXXQ motif family protein YPD8_0072 PF04754 Putative transposase, YhgA-like YPD8_0073 PF01545 Cation efflux family YPD8_0073 PF16916 Dimerisation domain of Zinc Transporter YPD8_0074 PF00365 Phosphofructokinase YPD8_0077 PF00939 Sodium:sulfate symporter transmembrane region YPD8_0078 PF03737 Aldolase/RraA YPD8_0079 PF02585 GlcNAc-PI de-N-acetylase YPD8_0080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_0080 PF03466 LysR substrate binding domain YPD8_0081 PF00121 Triosephosphate isomerase YPD8_0082 PF07305 Protein of unknown function (DUF1454) YPD8_0083 PF05656 Protein of unknown function (DUF805) YPD8_0084 PF00970 Oxidoreductase FAD-binding domain YPD8_0084 PF00175 Oxidoreductase NAD-binding domain YPD8_0085 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded YPD8_0086 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD8_0086 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPD8_0087 PF00230 Major intrinsic protein YPD8_0088 PF01797 Transposase IS200 like YPD8_0089 PF03412 Peptidase C39 family YPD8_0089 PF00664 ABC transporter transmembrane region YPD8_0089 PF00005 ABC transporter YPD8_0090 PF00529 HlyD membrane-fusion protein of T1SS YPD8_0090 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD8_0092 PF03737 Aldolase/RraA YPD8_0093 PF01040 UbiA prenyltransferase family YPD8_0094 PF07724 AAA domain (Cdc48 subfamily) YPD8_0094 PF00004 ATPase family associated with various cellular activities (AAA) YPD8_0094 PF10431 C-terminal, D2-small domain, of ClpB protein YPD8_0095 PF00227 Proteasome subunit YPD8_0096 PF05036 Sporulation related domain YPD8_0097 PF00356 Bacterial regulatory proteins, lacI family YPD8_0098 PF18319 PriA DNA helicase Cys-rich region (CRR) domain YPD8_0098 PF18074 Primosomal protein N C-terminal domain YPD8_0098 PF17764 3′ DNA-binding domain (3′BD) YPD8_0098 PF00271 Helicase conserved C-terminal domain YPD8_0098 PF00270 DEAD/DEAH box helicase YPD8_0099 PF05360 yiaA/B two helix domain YPD8_0100 PF01340 Met Apo-repressor, MetJ YPD8_0101 PF01053 Cys/Met metabolism PLP-dependent enzyme YPD8_0102 PF00742 Homoserine dehydrogenase YPD8_0102 PF00696 Amino acid kinase family YPD8_0102 PF03447 Homoserine dehydrogenase, NAD binding domain YPD8_0103 PF02219 Methylenetetrahydrofolate reductase YPD8_0104 PF00665 Integrase core domain YPD8_0104 PF13333 Integrase core domain YPD8_0104 PF13276 HTH-like domain YPD8_0106 PF08220 DeoR-like helix-turn-helix domain YPD8_0106 PF00455 DeoR C terminal sensor domain YPD8_0107 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease YPD8_0107 PF01694 Rhomboid family YPD8_0108 PF00581 Rhodanese-like domain YPD8_0109 PF17874 MalT-like TPR region YPD8_0109 PF00196 Bacterial regulatory proteins, luxR family YPD8_0110 PF00665 Integrase core domain YPD8_0110 PF02796 Helix-turn-helix domain of resolvase YPD8_0111 PF01695 IstB-like ATP binding protein YPD8_0112 PF17874 MalT-like TPR region YPD8_0112 PF00196 Bacterial regulatory proteins, luxR family YPD8_0113 PF00343 Carbohydrate phosphorylase YPD8_0114 PF00343 Carbohydrate phosphorylase YPD8_0115 PF02446 4-alpha-glucanotransferase YPD8_0116 PF01521 Iron-sulphur cluster biosynthesis YPD8_0116 PF01106 NifU-like domain YPD8_0117 PF00156 Phosphoribosyl transferase domain YPD8_0118 PF00561 alpha/beta hydrolase fold YPD8_0119 PF07664 Ferrous iron transport protein B C terminus YPD8_0119 PF17910 FeoB cytosolic helical domain YPD8_0119 PF02421 Ferrous iron transport protein B YPD8_0119 PF07670 Nucleoside recognition YPD8_0120 PF16921 Tex protein YqgF-like domain YPD8_0120 PF17674 HHH domain YPD8_0120 PF09371 Tex-like protein N-terminal domain YPD8_0120 PF00575 S1 RNA binding domain YPD8_0121 PF00575 S1 RNA binding domain YPD8_0121 PF09371 Tex-like protein N-terminal domain YPD8_0121 PF17674 HHH domain YPD8_0121 PF16921 Tex protein YqgF-like domain YPD8_0122 PF03449 Transcription elongation factor, N-terminal YPD8_0122 PF01272 Transcription elongation factor, GreA/GreB, C-term YPD8_0123 PF00486 Transcriptional regulatory protein, C terminal YPD8_0123 PF00072 Response regulator receiver domain YPD8_0124 PF00672 HAMP domain YPD8_0124 PF00512 His Kinase A (phospho-acceptor) domain YPD8_0124 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_0125 PF01293 Phosphoenolpyruvate carboxykinase YPD8_0126 PF01430 Hsp33 protein YPD8_0127 PF01479 S4 domain YPD8_0128 PF13419 Haloacid dehalogenase-like hydrolase YPD8_0129 PF07095 Intracellular growth attenuator protein IgaA YPD8_0130 PF00293 NUDIX domain YPD8_0131 PF00905 Penicillin binding protein transpeptidase domain YPD8_0131 PF17092 Penicillin-binding protein OB-like domain YPD8_0131 PF00912 Transglycosylase YPD8_0132 PF00905 Penicillin binding protein transpeptidase domain YPD8_0132 PF00912 Transglycosylase YPD8_0132 PF17092 Penicillin-binding protein OB-like domain YPD8_0137 PF00263 Bacterial type II and III secretion system protein YPD8_0137 PF03958 Bacterial type II/III secretion system short domain YPD8_0138 PF01202 Shikimate kinase YPD8_0139 PF01761 3-dehydroquinate synthase YPD8_0140 PF05036 Sporulation related domain YPD8_0141 PF02086 D12 class N6 adenine-specific DNA methyltransferase YPD8_0142 PF00834 Ribulose-phosphate 3 epimerase family YPD8_0143 PF13419 Haloacid dehalogenase-like hydrolase YPD8_0144 PF00579 tRNA synthetases class I (W and Y) YPD8_0145 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPD8_0145 PF14824 Sirohaem biosynthesis protein central YPD8_0145 PF10414 Sirohaem synthase dimerisation region YPD8_0146 PF01226 Formate/nitrite transporter YPD8_0147 PF13806 Rieske-like [2Fe-2S] domain YPD8_0148 PF18267 Rubredoxin NAD+ reductase C-terminal domain YPD8_0148 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPD8_0148 PF04324 BFD-like [2Fe-2S] binding domain YPD8_0148 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPD8_0148 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD8_0149 PF07969 Amidohydrolase family YPD8_0150 PF07690 Major Facilitator Superfamily YPD8_0152 PF00356 Bacterial regulatory proteins, lacI family YPD8_0153 PF02056 Family 4 glycosyl hydrolase YPD8_0153 PF11975 Family 4 glycosyl hydrolase C-terminal domain YPD8_0154 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPD8_0155 PF05872 Bacterial protein of unknown function (DUF853) YPD8_0156 PF00117 Glutamine amidotransferase class-I YPD8_0157 PF00202 Aminotransferase class-III YPD8_0158 PF12805 FUSC-like inner membrane protein yccS YPD8_0159 PF00027 Cyclic nucleotide-binding domain YPD8_0159 PF13545 Crp-like helix-turn-helix domain YPD8_0160 PF02566 OsmC-like protein YPD8_0162 PF00485 Phosphoribulokinase / Uridine kinase family YPD8_0163 PF00561 alpha/beta hydrolase fold YPD8_0164 PF01810 LysE type translocator YPD8_0165 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPD8_0166 PF00005 ABC transporter YPD8_0167 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_0168 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_0169 PF02668 Taurine catabolism dioxygenase TauD, TfdA family YPD8_0171 PF00535 Glycosyl transferase family 2 YPD8_0172 PF12848 ABC transporter YPD8_0172 PF00005 ABC transporter YPD8_0173 PF00005 ABC transporter YPD8_0173 PF12848 ABC transporter YPD8_0174 PF02525 Flavodoxin-like fold YPD8_0175 PF02254 TrkA-N domain YPD8_0175 PF00999 Sodium/hydrogen exchanger family YPD8_0176 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPD8_0177 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPD8_0177 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPD8_0178 PF13309 HTH domain YPD8_0178 PF08348 YheO-like PAS domain YPD8_0179 PF02635 DsrE/DsrF-like family YPD8_0180 PF02635 DsrE/DsrF-like family YPD8_0181 PF00164 Ribosomal protein S12/S23 YPD8_0182 PF00177 Ribosomal protein S7p/S5e YPD8_0183 PF03144 Elongation factor Tu domain 2 YPD8_0183 PF03764 Elongation factor G, domain IV YPD8_0183 PF14492 Elongation Factor G, domain II YPD8_0183 PF00679 Elongation factor G C-terminus YPD8_0183 PF00009 Elongation factor Tu GTP binding domain YPD8_0184 PF03143 Elongation factor Tu C-terminal domain YPD8_0184 PF00009 Elongation factor Tu GTP binding domain YPD8_0184 PF03144 Elongation factor Tu domain 2 YPD8_0185 PF01797 Transposase IS200 like YPD8_0186 PF00210 Ferritin-like domain YPD8_0187 PF00338 Ribosomal protein S10p/S20e YPD8_0188 PF00297 Ribosomal protein L3 YPD8_0189 PF00573 Ribosomal protein L4/L1 family YPD8_0190 PF00276 Ribosomal protein L23 YPD8_0191 PF03947 Ribosomal Proteins L2, C-terminal domain YPD8_0191 PF00181 Ribosomal Proteins L2, RNA binding domain YPD8_0192 PF00237 Ribosomal protein L22p/L17e YPD8_0193 PF00189 Ribosomal protein S3, C-terminal domain YPD8_0193 PF07650 KH domain YPD8_0194 PF00252 Ribosomal protein L16p/L10e YPD8_0195 PF00238 Ribosomal protein L14p/L23e YPD8_0196 PF00467 KOW motif YPD8_0196 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 YPD8_0197 PF00673 ribosomal L5P family C-terminus YPD8_0197 PF00281 Ribosomal protein L5 YPD8_0198 PF00253 Ribosomal protein S14p/S29e YPD8_0199 PF00410 Ribosomal protein S8 YPD8_0200 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast YPD8_0201 PF00333 Ribosomal protein S5, N-terminal domain YPD8_0201 PF03719 Ribosomal protein S5, C-terminal domain YPD8_0202 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A YPD8_0203 PF00344 SecY translocase YPD8_0204 PF00416 Ribosomal protein S13/S18 YPD8_0205 PF01479 S4 domain YPD8_0205 PF00163 Ribosomal protein S4/S9 N-terminal domain YPD8_0206 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain YPD8_0206 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain YPD8_0206 PF01000 RNA polymerase Rpb3/RpoA insert domain YPD8_0207 PF01196 Ribosomal protein L17 YPD8_0208 PF13411 MerR HTH family regulatory protein YPD8_0209 PF01741 Large-conductance mechanosensitive channel, MscL YPD8_0210 PF02080 TrkA-C domain YPD8_0210 PF02254 TrkA-N domain YPD8_0211 PF01189 16S rRNA methyltransferase RsmB/F YPD8_0211 PF01029 NusB family YPD8_0212 PF00551 Formyl transferase YPD8_0212 PF02911 Formyl transferase, C-terminal domain YPD8_0213 PF01327 Polypeptide deformylase YPD8_0214 PF02481 DNA recombination-mediator protein A YPD8_0214 PF17782 DprA winged helix domain YPD8_0215 PF04361 Protein of unknown function (DUF494) YPD8_0216 PF01396 Topoisomerase DNA binding C4 zinc finger YPD8_0217 PF01300 Telomere recombination YPD8_0218 PF01488 Shikimate / quinate 5-dehydrogenase YPD8_0218 PF08501 Shikimate dehydrogenase substrate binding domain YPD8_0218 PF18317 Shikimate 5'-dehydrogenase C-terminal domain YPD8_0219 PF00132 Bacterial transferase hexapeptide (six repeats) YPD8_0220 PF01695 IstB-like ATP binding protein YPD8_0221 PF02796 Helix-turn-helix domain of resolvase YPD8_0221 PF00665 Integrase core domain YPD8_0223 PF00474 Sodium:solute symporter family YPD8_0224 PF04341 Protein of unknown function, DUF485 YPD8_0225 PF16177 Acetyl-coenzyme A synthetase N-terminus YPD8_0225 PF00501 AMP-binding enzyme YPD8_0225 PF13193 AMP-binding enzyme C-terminal domain YPD8_0226 PF00375 Sodium:dicarboxylate symporter family YPD8_0227 PF00196 Bacterial regulatory proteins, luxR family YPD8_0227 PF00072 Response regulator receiver domain YPD8_0228 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPD8_0228 PF00072 Response regulator receiver domain YPD8_0228 PF01627 Hpt domain YPD8_0228 PF00672 HAMP domain YPD8_0228 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_0228 PF00512 His Kinase A (phospho-acceptor) domain YPD8_0231 PF12833 Helix-turn-helix domain YPD8_0231 PF14525 AraC-binding-like domain YPD8_0232 PF01514 Secretory protein of YscJ/FliF family YPD8_0235 PF00771 FHIPEP family YPD8_0236 PF18269 T3SS EscN ATPase C-terminal domain YPD8_0236 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPD8_0239 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPD8_0240 PF00813 FliP family YPD8_0241 PF01311 Bacterial export proteins, family 1 YPD8_0242 PF01312 FlhB HrpN YscU SpaS Family YPD8_0243 PF04143 Sulphur transport YPD8_0244 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_0244 PF03466 LysR substrate binding domain YPD8_0245 PF03222 Tryptophan/tyrosine permease family YPD8_0246 PF01053 Cys/Met metabolism PLP-dependent enzyme YPD8_0247 PF00005 ABC transporter YPD8_0248 PF01032 FecCD transport family YPD8_0249 PF01497 Periplasmic binding protein YPD8_0250 PF05171 Haemin-degrading HemS.ChuX domain YPD8_0251 PF07715 TonB-dependent Receptor Plug Domain YPD8_0251 PF00593 TonB dependent receptor YPD8_0252 PF13460 NAD(P)H-binding YPD8_0253 PF06228 Haem utilisation ChuX/HutX YPD8_0254 PF04055 Radical SAM superfamily YPD8_0258 PF15608 PELOTA RNA binding domain YPD8_0258 PF11202 Phosphoribosyl transferase (PRTase) YPD8_0262 PF02342 TerD domain YPD8_0263 PF02342 TerD domain YPD8_0264 PF03741 Integral membrane protein TerC family YPD8_0265 PF02342 TerD domain YPD8_0266 PF02342 TerD domain YPD8_0268 PF13953 PapC C-terminal domain YPD8_0268 PF00577 Outer membrane usher protein YPD8_0268 PF13954 PapC N-terminal domain YPD8_0269 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD8_0271 PF01565 FAD binding domain YPD8_0271 PF08031 Berberine and berberine like YPD8_0272 PF12951 Passenger-associated-transport-repeat YPD8_0273 PF04345 Chorismate lyase YPD8_0274 PF01040 UbiA prenyltransferase family YPD8_0275 PF01553 Acyltransferase YPD8_0276 PF01219 Prokaryotic diacylglycerol kinase YPD8_0277 PF00717 Peptidase S24-like YPD8_0277 PF01726 LexA DNA binding domain YPD8_0278 PF01475 Ferric uptake regulator family YPD8_0279 PF01207 Dihydrouridine synthase (Dus) YPD8_0280 PF08240 Alcohol dehydrogenase GroES-like domain YPD8_0280 PF00107 Zinc-binding dehydrogenase YPD8_0281 PF03796 DnaB-like helicase C terminal domain YPD8_0281 PF00772 DnaB-like helicase N terminal domain YPD8_0282 PF01168 Alanine racemase, N-terminal domain YPD8_0282 PF00842 Alanine racemase, C-terminal domain YPD8_0283 PF00155 Aminotransferase class I and II YPD8_0284 PF04237 YjbR YPD8_0285 PF00005 ABC transporter YPD8_0285 PF17760 UvrA interaction domain YPD8_0285 PF17755 UvrA DNA-binding domain YPD8_0286 PF00436 Single-strand binding protein family YPD8_0287 PF05336 L-rhamnose mutarotase YPD8_0288 PF00465 Iron-containing alcohol dehydrogenase YPD8_0289 PF00596 Class II Aldolase and Adducin N-terminal domain YPD8_0290 PF06134 L-rhamnose isomerase (RhaA) YPD8_0291 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPD8_0291 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD8_0292 PF02311 AraC-like ligand binding domain YPD8_0292 PF12833 Helix-turn-helix domain YPD8_0293 PF12833 Helix-turn-helix domain YPD8_0293 PF02311 AraC-like ligand binding domain YPD8_0294 PF06379 L-rhamnose-proton symport protein (RhaT) YPD8_0298 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPD8_0298 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD8_0298 PF13247 4Fe-4S dicluster domain YPD8_0299 PF12800 4Fe-4S binding domain YPD8_0299 PF13247 4Fe-4S dicluster domain YPD8_0300 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPD8_0300 PF00384 Molybdopterin oxidoreductase YPD8_0300 PF01568 Molydopterin dinucleotide binding domain YPD8_0301 PF11412 Disulphide bond corrector protein DsbC YPD8_0301 PF02683 Cytochrome C biogenesis protein transmembrane region YPD8_0302 PF03091 CutA1 divalent ion tolerance protein YPD8_0303 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPD8_0304 PF00206 Lyase YPD8_0304 PF10415 Fumarase C C-terminus YPD8_0305 PF04186 FxsA cytoplasmic membrane protein YPD8_0306 PF00118 TCP-1/cpn60 chaperonin family YPD8_0307 PF13698 Domain of unknown function (DUF4156) YPD8_0308 PF04055 Radical SAM superfamily YPD8_0309 PF01132 Elongation factor P (EF-P) OB domain YPD8_0309 PF08207 Elongation factor P (EF-P) KOW-like domain YPD8_0309 PF09285 Elongation factor P, C-terminal YPD8_0310 PF00893 Small Multidrug Resistance protein YPD8_0311 PF02313 Fumarate reductase subunit D YPD8_0312 PF02300 Fumarate reductase subunit C YPD8_0313 PF13183 4Fe-4S dicluster domain YPD8_0313 PF13085 2Fe-2S iron-sulfur cluster binding domain YPD8_0314 PF02910 Fumarate reductase flavoprotein C-term YPD8_0314 PF00890 FAD binding domain YPD8_0315 PF00152 tRNA synthetases class II (D, K and N) YPD8_0316 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPD8_0316 PF12795 Mechanosensitive ion channel porin domain YPD8_0316 PF00924 Mechanosensitive ion channel YPD8_0317 PF02666 Phosphatidylserine decarboxylase YPD8_0318 PF03193 RsgA GTPase YPD8_0319 PF00929 Exonuclease YPD8_0320 PF08331 Domain of unknown function (DUF1730) YPD8_0321 PF01256 Carbohydrate kinase YPD8_0321 PF03853 YjeF-related protein N-terminus YPD8_0322 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE YPD8_0323 PF01520 N-acetylmuramoyl-L-alanine amidase YPD8_0324 PF08676 MutL C terminal dimerisation domain YPD8_0324 PF01119 DNA mismatch repair protein, C-terminal domain YPD8_0325 PF08676 MutL C terminal dimerisation domain YPD8_0325 PF01119 DNA mismatch repair protein, C-terminal domain YPD8_0327 PF17209 Hfq protein YPD8_0328 PF01926 50S ribosome-binding GTPase YPD8_0328 PF13167 GTP-binding GTPase N-terminal YPD8_0328 PF16360 GTP-binding GTPase Middle Region YPD8_0329 PF12221 Bacterial membrane protein N terminal YPD8_0329 PF01145 SPFH domain / Band 7 family YPD8_0330 PF01145 SPFH domain / Band 7 family YPD8_0331 PF00709 Adenylosuccinate synthetase YPD8_0332 PF02082 Transcriptional regulator YPD8_0333 PF00773 RNB domain YPD8_0333 PF08206 Ribonuclease B OB domain YPD8_0333 PF08461 Ribonuclease R winged-helix domain YPD8_0333 PF17876 Cold shock domain YPD8_0333 PF00575 S1 RNA binding domain YPD8_0334 PF00588 SpoU rRNA Methylase family YPD8_0334 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPD8_0335 PF18158 Adaptive response protein AidB N-terminal domain YPD8_0335 PF02770 Acyl-CoA dehydrogenase, middle domain YPD8_0335 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPD8_0336 PF01695 IstB-like ATP binding protein YPD8_0337 PF00665 Integrase core domain YPD8_0337 PF02796 Helix-turn-helix domain of resolvase YPD8_0338 PF07728 AAA domain (dynein-related subfamily) YPD8_0338 PF12102 Domain of unknown function (DUF3578) YPD8_0340 PF01555 DNA methylase YPD8_0346 PF05987 Bacterial protein of unknown function (DUF898) YPD8_0348 PF12833 Helix-turn-helix domain YPD8_0349 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPD8_0350 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPD8_0352 PF05524 PEP-utilising enzyme, N-terminal YPD8_0352 PF00391 PEP-utilising enzyme, mobile domain YPD8_0352 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPD8_0352 PF00381 PTS HPr component phosphorylation site YPD8_0352 PF02896 PEP-utilising enzyme, TIM barrel domain YPD8_0353 PF10696 Protein of unknown function (DUF2501) YPD8_0354 PF01791 DeoC/LacD family aldolase YPD8_0355 PF13407 Periplasmic binding protein domain YPD8_0356 PF02653 Branched-chain amino acid transport system / permease component YPD8_0357 PF02653 Branched-chain amino acid transport system / permease component YPD8_0358 PF00005 ABC transporter YPD8_0360 PF04198 Putative sugar-binding domain YPD8_0360 PF00325 Bacterial regulatory proteins, crp family YPD8_0361 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPD8_0361 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD8_0362 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPD8_0364 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD8_0365 PF00873 AcrB/AcrD/AcrF family YPD8_0366 PF01095 Pectinesterase YPD8_0367 PF00990 Diguanylate cyclase, GGDEF domain YPD8_0368 PF05175 Methyltransferase small domain YPD8_0368 PF08468 Methyltransferase small domain N-terminal YPD8_0369 PF03603 DNA polymerase III psi subunit YPD8_0370 PF00583 Acetyltransferase (GNAT) family YPD8_0371 PF16658 Class II release factor RF3, C-terminal domain YPD8_0371 PF03144 Elongation factor Tu domain 2 YPD8_0371 PF00009 Elongation factor Tu GTP binding domain YPD8_0372 PF04972 BON domain YPD8_0373 PF01734 Patatin-like phospholipase YPD8_0374 PF01026 TatD related DNase YPD8_0375 PF07670 Nucleoside recognition YPD8_0375 PF07662 Na+ dependent nucleoside transporter C-terminus YPD8_0375 PF01773 Na+ dependent nucleoside transporter N-terminus YPD8_0376 PF01791 DeoC/LacD family aldolase YPD8_0377 PF02885 Glycosyl transferase family, helical bundle domain YPD8_0377 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain YPD8_0377 PF00591 Glycosyl transferase family, a/b domain YPD8_0378 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain YPD8_0378 PF00591 Glycosyl transferase family, a/b domain YPD8_0378 PF02885 Glycosyl transferase family, helical bundle domain YPD8_0379 PF01676 Metalloenzyme superfamily YPD8_0380 PF01048 Phosphorylase superfamily YPD8_0381 PF10144 Bacterial virulence factor haemolysin YPD8_0382 PF18429 Domain of unknown function (DUF5609) YPD8_0383 PF18073 Rubredoxin metal binding domain YPD8_0384 PF01381 Helix-turn-helix YPD8_0384 PF13521 AAA domain YPD8_0386 PF00005 ABC transporter YPD8_0386 PF12848 ABC transporter YPD8_0387 PF12848 ABC transporter YPD8_0387 PF00005 ABC transporter YPD8_0388 PF00691 OmpA family YPD8_0389 PF00990 Diguanylate cyclase, GGDEF domain YPD8_0389 PF17152 Periplasmic sensor domain YPD8_0391 PF00690 Cation transporter/ATPase, N-terminus YPD8_0391 PF00689 Cation transporting ATPase, C-terminus YPD8_0392 PF01464 Transglycosylase SLT domain YPD8_0392 PF14718 Soluble lytic murein transglycosylase L domain YPD8_0393 PF01371 Trp repressor protein YPD8_0394 PF01931 Protein of unknown function DUF84 YPD8_0395 PF00300 Histidine phosphatase superfamily (branch 1) YPD8_0396 PF06445 GyrI-like small molecule binding domain YPD8_0396 PF12833 Helix-turn-helix domain YPD8_0397 PF05981 CreA protein YPD8_0398 PF00072 Response regulator receiver domain YPD8_0398 PF00486 Transcriptional regulatory protein, C terminal YPD8_0399 PF00696 Amino acid kinase family YPD8_0399 PF00742 Homoserine dehydrogenase YPD8_0399 PF03447 Homoserine dehydrogenase, NAD binding domain YPD8_0399 PF01842 ACT domain YPD8_0399 PF13840 ACT domain YPD8_0400 PF00288 GHMP kinases N terminal domain YPD8_0400 PF08544 GHMP kinases C terminal YPD8_0401 PF14821 Threonine synthase N terminus YPD8_0401 PF00291 Pyridoxal-phosphate dependent enzyme YPD8_0402 PF03883 Peroxide stress protein YaaA YPD8_0403 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPD8_0404 PF00994 Probable molybdopterin binding domain YPD8_0405 PF07690 Major Facilitator Superfamily YPD8_0407 PF01184 GPR1/FUN34/yaaH family YPD8_0408 PF00012 Hsp70 protein YPD8_0409 PF00226 DnaJ domain YPD8_0409 PF00684 DnaJ central domain YPD8_0409 PF01556 DnaJ C terminal domain YPD8_0410 PF06965 Na+/H+ antiporter 1 YPD8_0411 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_0411 PF03466 LysR substrate binding domain YPD8_0412 PF01687 Riboflavin kinase YPD8_0412 PF06574 FAD synthetase YPD8_0413 PF06574 FAD synthetase YPD8_0413 PF01687 Riboflavin kinase YPD8_0414 PF08264 Anticodon-binding domain of tRNA YPD8_0414 PF00133 tRNA synthetases class I (I, L, M and V) YPD8_0414 PF06827 Zinc finger found in FPG and IleRS YPD8_0415 PF01252 Signal peptidase (SPase) II YPD8_0416 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPD8_0417 PF02401 LytB protein YPD8_0418 PF01797 Transposase IS200 like YPD8_0419 PF05173 Dihydrodipicolinate reductase, C-terminus YPD8_0419 PF01113 Dihydrodipicolinate reductase, N-terminus YPD8_0420 PF00117 Glutamine amidotransferase class-I YPD8_0420 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain YPD8_0421 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YPD8_0421 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPD8_0421 PF02142 MGS-like domain YPD8_0422 PF01810 LysE type translocator YPD8_0423 PF06738 Putative threonine/serine exporter YPD8_0424 PF12821 Threonine/Serine exporter, ThrE YPD8_0425 PF00186 Dihydrofolate reductase YPD8_0426 PF01797 Transposase IS200 like YPD8_0428 PF00149 Calcineurin-like phosphoesterase YPD8_0429 PF04379 ApaG domain YPD8_0430 PF00398 Ribosomal RNA adenine dimethylase YPD8_0431 PF04166 Pyridoxal phosphate biosynthetic protein PdxA YPD8_0432 PF00639 PPIC-type PPIASE domain YPD8_0432 PF09312 SurA N-terminal domain YPD8_0433 PF03968 OstA-like protein YPD8_0433 PF04453 LPS transport system D YPD8_0434 PF00226 DnaJ domain YPD8_0434 PF05099 Tellurite resistance protein TerB YPD8_0435 PF00849 RNA pseudouridylate synthase YPD8_0444 PF07724 AAA domain (Cdc48 subfamily) YPD8_0444 PF17871 AAA lid domain YPD8_0444 PF00004 ATPase family associated with various cellular activities (AAA) YPD8_0444 PF10431 C-terminal, D2-small domain, of ClpB protein YPD8_0445 PF04717 Type VI secretion system, phage-baseplate injector YPD8_0452 PF00691 OmpA family YPD8_0452 PF05736 OprF membrane domain YPD8_0455 PF00176 SNF2 family N-terminal domain YPD8_0455 PF18339 RapA N-terminal Tudor like domain 1 YPD8_0455 PF00271 Helicase conserved C-terminal domain YPD8_0455 PF18337 RapA N-terminal Tudor like domain YPD8_0455 PF12137 RNA polymerase recycling family C-terminal YPD8_0456 PF00136 DNA polymerase family B YPD8_0456 PF03104 DNA polymerase family B, exonuclease domain YPD8_0457 PF09335 SNARE associated Golgi protein YPD8_0458 PF00005 ABC transporter YPD8_0459 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_0461 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPD8_0461 PF12793 Sugar transport-related sRNA regulator N-term YPD8_0462 PF07690 Major Facilitator Superfamily YPD8_0463 PF01695 IstB-like ATP binding protein YPD8_0464 PF02796 Helix-turn-helix domain of resolvase YPD8_0464 PF00665 Integrase core domain YPD8_0465 PF00694 Aconitase C-terminal domain YPD8_0466 PF00330 Aconitase family (aconitate hydratase) YPD8_0467 PF00180 Isocitrate/isopropylmalate dehydrogenase YPD8_0468 PF00682 HMGL-like YPD8_0468 PF08502 LeuA allosteric (dimerisation) domain YPD8_0469 PF01797 Transposase IS200 like YPD8_0470 PF03466 LysR substrate binding domain YPD8_0470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_0471 PF00501 AMP-binding enzyme YPD8_0472 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPD8_0472 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPD8_0472 PF00205 Thiamine pyrophosphate enzyme, central domain YPD8_0473 PF10369 Small subunit of acetolactate synthase YPD8_0474 PF01797 Transposase IS200 like YPD8_0475 PF00356 Bacterial regulatory proteins, lacI family YPD8_0475 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPD8_0476 PF06610 L-alanine exporter YPD8_0477 PF02381 MraZ protein, putative antitoxin-like YPD8_0478 PF01795 MraW methylase family YPD8_0479 PF04999 Cell division protein FtsL YPD8_0480 PF00905 Penicillin binding protein transpeptidase domain YPD8_0480 PF03717 Penicillin-binding Protein dimerisation domain YPD8_0481 PF08245 Mur ligase middle domain YPD8_0481 PF01225 Mur ligase family, catalytic domain YPD8_0481 PF02875 Mur ligase family, glutamate ligase domain YPD8_0482 PF08245 Mur ligase middle domain YPD8_0482 PF02875 Mur ligase family, glutamate ligase domain YPD8_0482 PF01225 Mur ligase family, catalytic domain YPD8_0483 PF01225 Mur ligase family, catalytic domain YPD8_0483 PF02875 Mur ligase family, glutamate ligase domain YPD8_0483 PF08245 Mur ligase middle domain YPD8_0484 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 YPD8_0484 PF00953 Glycosyl transferase family 4 YPD8_0485 PF02875 Mur ligase family, glutamate ligase domain YPD8_0485 PF08245 Mur ligase middle domain YPD8_0486 PF01098 Cell cycle protein YPD8_0487 PF03033 Glycosyltransferase family 28 N-terminal domain YPD8_0487 PF04101 Glycosyltransferase family 28 C-terminal domain YPD8_0488 PF01225 Mur ligase family, catalytic domain YPD8_0488 PF02875 Mur ligase family, glutamate ligase domain YPD8_0488 PF08245 Mur ligase middle domain YPD8_0489 PF07478 D-ala D-ala ligase C-terminus YPD8_0489 PF01820 D-ala D-ala ligase N-terminus YPD8_0490 PF08478 POTRA domain, FtsQ-type YPD8_0490 PF03799 Cell division protein FtsQ YPD8_0491 PF02491 SHS2 domain inserted in FTSA YPD8_0492 PF12327 FtsZ family, C-terminal domain YPD8_0492 PF00091 Tubulin/FtsZ family, GTPase domain YPD8_0493 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase YPD8_0495 PF06558 Secretion monitor precursor protein (SecM) YPD8_0496 PF02810 SEC-C motif YPD8_0496 PF01043 SecA preprotein cross-linking domain YPD8_0496 PF07517 SecA DEAD-like domain YPD8_0496 PF07516 SecA Wing and Scaffold domain YPD8_0497 PF00293 NUDIX domain YPD8_0498 PF01695 IstB-like ATP binding protein YPD8_0499 PF00665 Integrase core domain YPD8_0499 PF02796 Helix-turn-helix domain of resolvase YPD8_0500 PF07681 DoxX YPD8_0501 PF07332 Putative Actinobacterial Holin-X, holin superfamily III YPD8_0502 PF05957 Bacterial protein of unknown function (DUF883) YPD8_0504 PF13721 SecD export protein N-terminal TM region YPD8_0505 PF09335 SNARE associated Golgi protein YPD8_0507 PF07729 FCD domain YPD8_0507 PF00392 Bacterial regulatory proteins, gntR family YPD8_0508 PF07690 Major Facilitator Superfamily YPD8_0509 PF02614 Glucuronate isomerase YPD8_0510 PF01232 Mannitol dehydrogenase Rossmann domain YPD8_0510 PF08125 Mannitol dehydrogenase C-terminal domain YPD8_0511 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus YPD8_0511 PF08666 SAF domain YPD8_0512 PF10688 Bacterial inner membrane protein YPD8_0513 PF01797 Transposase IS200 like YPD8_0514 PF00375 Sodium:dicarboxylate symporter family YPD8_0515 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPD8_0516 PF01863 Protein of unknown function DUF45 YPD8_0517 PF03797 Autotransporter beta-domain YPD8_0518 PF05175 Methyltransferase small domain YPD8_0519 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD8_0519 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPD8_0520 PF03729 Short repeat of unknown function (DUF308) YPD8_0523 PF00092 von Willebrand factor type A domain YPD8_0525 PF02342 TerD domain YPD8_0526 PF00092 von Willebrand factor type A domain YPD8_0527 PF17287 POTRA domain YPD8_0527 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPD8_0527 PF08479 POTRA domain, ShlB-type YPD8_0528 PF05860 haemagglutination activity domain YPD8_0528 PF13018 Extended Signal Peptide of Type V secretion system YPD8_0528 PF13332 Hemagglutinin repeat YPD8_0528 PF04829 Pre-toxin domain with VENN motif YPD8_0529 PF05860 haemagglutination activity domain YPD8_0529 PF04829 Pre-toxin domain with VENN motif YPD8_0529 PF13332 Hemagglutinin repeat YPD8_0529 PF13018 Extended Signal Peptide of Type V secretion system YPD8_0533 PF00005 ABC transporter YPD8_0533 PF03459 TOBE domain YPD8_0533 PF17912 MalK OB fold domain YPD8_0534 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain YPD8_0535 PF00356 Bacterial regulatory proteins, lacI family YPD8_0536 PF13416 Bacterial extracellular solute-binding protein YPD8_0537 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_0538 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_0540 PF01915 Glycosyl hydrolase family 3 C-terminal domain YPD8_0540 PF00933 Glycosyl hydrolase family 3 N terminal domain YPD8_0540 PF14310 Fibronectin type III-like domain YPD8_0542 PF04632 Fusaric acid resistance protein family YPD8_0543 PF00529 HlyD membrane-fusion protein of T1SS YPD8_0543 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD8_0548 PF01042 Endoribonuclease L-PSP YPD8_0552 PF03466 LysR substrate binding domain YPD8_0552 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_0557 PF04542 Sigma-70 region 2 YPD8_0557 PF04539 Sigma-70 region 3 YPD8_0557 PF04546 Sigma-70, non-essential region YPD8_0557 PF04545 Sigma-70, region 4 YPD8_0557 PF03979 Sigma-70 factor, region 1.1 YPD8_0557 PF00140 Sigma-70 factor, region 1.2 YPD8_0558 PF00140 Sigma-70 factor, region 1.2 YPD8_0558 PF04539 Sigma-70 region 3 YPD8_0558 PF04542 Sigma-70 region 2 YPD8_0558 PF03979 Sigma-70 factor, region 1.1 YPD8_0558 PF04546 Sigma-70, non-essential region YPD8_0558 PF04545 Sigma-70, region 4 YPD8_0559 PF08275 DNA primase catalytic core, N-terminal domain YPD8_0559 PF01807 CHC2 zinc finger YPD8_0559 PF08278 DNA primase DnaG DnaB-binding YPD8_0559 PF10410 DnaB-helicase binding domain of primase YPD8_0560 PF00814 Glycoprotease family YPD8_0561 PF02660 Glycerol-3-phosphate acyltransferase YPD8_0562 PF02152 Dihydroneopterin aldolase YPD8_0563 PF02673 Bacitracin resistance protein BacA YPD8_0564 PF01966 HD domain YPD8_0564 PF12627 Probable RNA and SrmB- binding site of polymerase A YPD8_0564 PF01743 Poly A polymerase head domain YPD8_0565 PF08239 Bacterial SH3 domain YPD8_0566 PF01928 CYTH domain YPD8_0567 PF08335 GlnD PII-uridylyltransferase YPD8_0567 PF03710 Glutamate-ammonia ligase adenylyltransferase YPD8_0568 PF00294 pfkB family carbohydrate kinase YPD8_0568 PF01467 Cytidylyltransferase-like YPD8_0569 PF13520 Amino acid permease YPD8_0570 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase YPD8_0571 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPD8_0572 PF03738 Glutathionylspermidine synthase preATP-grasp YPD8_0573 PF06693 Protein of unknown function (DUF1190) YPD8_0574 PF02321 Outer membrane efflux protein YPD8_0575 PF00293 NUDIX domain YPD8_0576 PF06853 Protein of unknown function (DUF1249) YPD8_0577 PF00149 Calcineurin-like phosphoesterase YPD8_0578 PF05728 Uncharacterised protein family (UPF0227) YPD8_0579 PF01751 Toprim domain YPD8_0579 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_0579 PF00986 DNA gyrase B subunit, carboxyl terminus YPD8_0579 PF00204 DNA gyrase B YPD8_0580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_0580 PF03466 LysR substrate binding domain YPD8_0581 PF02525 Flavodoxin-like fold YPD8_0582 PF03989 DNA gyrase C-terminal domain, beta-propeller YPD8_0582 PF00521 DNA gyrase/topoisomerase IV, subunit A YPD8_0583 PF01553 Acyltransferase YPD8_0584 PF07731 Multicopper oxidase YPD8_0584 PF07732 Multicopper oxidase YPD8_0585 PF11842 Domain of unknown function (DUF3362) YPD8_0585 PF04055 Radical SAM superfamily YPD8_0585 PF08497 Radical SAM N-terminal YPD8_0586 PF11842 Domain of unknown function (DUF3362) YPD8_0586 PF08497 Radical SAM N-terminal YPD8_0586 PF04055 Radical SAM superfamily YPD8_0587 PF00248 Aldo/keto reductase family YPD8_0588 PF00465 Iron-containing alcohol dehydrogenase YPD8_0589 PF12833 Helix-turn-helix domain YPD8_0589 PF06719 AraC-type transcriptional regulator N-terminus YPD8_0590 PF09335 SNARE associated Golgi protein YPD8_0591 PF01053 Cys/Met metabolism PLP-dependent enzyme YPD8_0592 PF01618 MotA/TolQ/ExbB proton channel family YPD8_0593 PF02472 Biopolymer transport protein ExbD/TolR YPD8_0600 PF00437 Type II/IV secretion system protein YPD8_0602 PF13629 Pilus formation protein N terminal region YPD8_0602 PF00263 Bacterial type II and III secretion system protein YPD8_0602 PF04972 BON domain YPD8_0603 PF00263 Bacterial type II and III secretion system protein YPD8_0603 PF04972 BON domain YPD8_0603 PF13629 Pilus formation protein N terminal region YPD8_0606 PF01797 Transposase IS200 like YPD8_0607 PF01797 Transposase IS200 like YPD8_0608 PF13953 PapC C-terminal domain YPD8_0608 PF13954 PapC N-terminal domain YPD8_0608 PF00577 Outer membrane usher protein YPD8_0609 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD8_0609 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD8_0610 PF00419 Fimbrial protein YPD8_0610 PF09222 Fimbrial adhesin F17-AG, lectin domain YPD8_0611 PF01497 Periplasmic binding protein YPD8_0613 PF00771 FHIPEP family YPD8_0614 PF00771 FHIPEP family YPD8_0615 PF01312 FlhB HrpN YscU SpaS Family YPD8_0616 PF01311 Bacterial export proteins, family 1 YPD8_0617 PF00813 FliP family YPD8_0618 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPD8_0620 PF00072 Response regulator receiver domain YPD8_0620 PF02954 Bacterial regulatory protein, Fis family YPD8_0620 PF00158 Sigma-54 interaction domain YPD8_0621 PF02049 Flagellar hook-basal body complex protein FliE YPD8_0622 PF08345 Flagellar M-ring protein C-terminal YPD8_0622 PF01514 Secretory protein of YscJ/FliF family YPD8_0625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPD8_0625 PF18269 T3SS EscN ATPase C-terminal domain YPD8_0628 PF13144 Chaperone for flagella basal body P-ring formation YPD8_0629 PF00460 Flagella basal body rod protein YPD8_0630 PF03963 Flagellar hook capping protein - N-terminal region YPD8_0630 PF13861 FlgD Tudor-like domain YPD8_0630 PF13860 FlgD Ig-like domain YPD8_0631 PF07559 Flagellar basal body protein FlaE YPD8_0631 PF00460 Flagella basal body rod protein YPD8_0631 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD8_0632 PF07559 Flagellar basal body protein FlaE YPD8_0632 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD8_0632 PF00460 Flagella basal body rod protein YPD8_0633 PF01797 Transposase IS200 like YPD8_0634 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD8_0634 PF00460 Flagella basal body rod protein YPD8_0635 PF00460 Flagella basal body rod protein YPD8_0635 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD8_0636 PF02107 Flagellar L-ring protein YPD8_0637 PF02119 Flagellar P-ring protein YPD8_0638 PF00460 Flagella basal body rod protein YPD8_0638 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD8_0642 PF18500 CadC C-terminal domain 1 YPD8_0642 PF00486 Transcriptional regulatory protein, C terminal YPD8_0643 PF00669 Bacterial flagellin N-terminal helical region YPD8_0643 PF00700 Bacterial flagellin C-terminal helical region YPD8_0644 PF00669 Bacterial flagellin N-terminal helical region YPD8_0644 PF00700 Bacterial flagellin C-terminal helical region YPD8_0645 PF00700 Bacterial flagellin C-terminal helical region YPD8_0645 PF00669 Bacterial flagellin N-terminal helical region YPD8_0646 PF02465 Flagellar hook-associated protein 2 N-terminus YPD8_0646 PF07195 Flagellar hook-associated protein 2 C-terminus YPD8_0646 PF07196 Flagellin hook IN motif YPD8_0651 PF04542 Sigma-70 region 2 YPD8_0651 PF04545 Sigma-70, region 4 YPD8_0652 PF01618 MotA/TolQ/ExbB proton channel family YPD8_0653 PF13677 Membrane MotB of proton-channel complex MotA/MotB YPD8_0653 PF00691 OmpA family YPD8_0657 PF13276 HTH-like domain YPD8_0657 PF00665 Integrase core domain YPD8_0657 PF13333 Integrase core domain YPD8_0659 PF00356 Bacterial regulatory proteins, lacI family YPD8_0660 PF00939 Sodium:sulfate symporter transmembrane region YPD8_0662 PF05593 RHS Repeat YPD8_0662 PF03527 RHS protein YPD8_0664 PF04717 Type VI secretion system, phage-baseplate injector YPD8_0665 PF04717 Type VI secretion system, phage-baseplate injector YPD8_0666 PF12951 Passenger-associated-transport-repeat YPD8_0667 PF12951 Passenger-associated-transport-repeat YPD8_0669 PF02447 GntP family permease YPD8_0672 PF00005 ABC transporter YPD8_0672 PF00664 ABC transporter transmembrane region YPD8_0673 PF08021 Siderophore-interacting FAD-binding domain YPD8_0673 PF00005 ABC transporter YPD8_0673 PF00664 ABC transporter transmembrane region YPD8_0673 PF04954 Siderophore-interacting protein YPD8_0675 PF00975 Thioesterase domain YPD8_0678 PF00501 AMP-binding enzyme YPD8_0678 PF00668 Condensation domain YPD8_0678 PF00550 Phosphopantetheine attachment site YPD8_0678 PF08242 Methyltransferase domain YPD8_0679 PF00668 Condensation domain YPD8_0679 PF00501 AMP-binding enzyme YPD8_0679 PF13193 AMP-binding enzyme C-terminal domain YPD8_0680 PF00501 AMP-binding enzyme YPD8_0680 PF00668 Condensation domain YPD8_0680 PF08242 Methyltransferase domain YPD8_0680 PF00550 Phosphopantetheine attachment site YPD8_0681 PF01695 IstB-like ATP binding protein YPD8_0682 PF00665 Integrase core domain YPD8_0682 PF02796 Helix-turn-helix domain of resolvase YPD8_0683 PF00550 Phosphopantetheine attachment site YPD8_0683 PF02801 Beta-ketoacyl synthase, C-terminal domain YPD8_0683 PF00109 Beta-ketoacyl synthase, N-terminal domain YPD8_0683 PF16197 Ketoacyl-synthetase C-terminal extension YPD8_0683 PF00202 Aminotransferase class-III YPD8_0683 PF00668 Condensation domain YPD8_0683 PF13193 AMP-binding enzyme C-terminal domain YPD8_0683 PF00501 AMP-binding enzyme YPD8_0684 PF07715 TonB-dependent Receptor Plug Domain YPD8_0684 PF00593 TonB dependent receptor YPD8_0685 PF07687 Peptidase dimerisation domain YPD8_0685 PF01546 Peptidase family M20/M25/M40 YPD8_0686 PF03806 AbgT putative transporter family YPD8_0687 PF14496 C-terminal novel E3 ligase, LRR-interacting YPD8_0687 PF12468 Type III secretion system leucine rich repeat protein YPD8_0688 PF14496 C-terminal novel E3 ligase, LRR-interacting YPD8_0688 PF12468 Type III secretion system leucine rich repeat protein YPD8_0688 PF12468 Type III secretion system leucine rich repeat protein YPD8_0688 PF14496 C-terminal novel E3 ligase, LRR-interacting YPD8_0689 PF12468 Type III secretion system leucine rich repeat protein YPD8_0689 PF14496 C-terminal novel E3 ligase, LRR-interacting YPD8_0690 PF03797 Autotransporter beta-domain YPD8_0692 PF07906 ShET2 enterotoxin, N-terminal region YPD8_0693 PF00873 AcrB/AcrD/AcrF family YPD8_0694 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD8_0694 PF00529 HlyD membrane-fusion protein of T1SS YPD8_0695 PF00563 EAL domain YPD8_0695 PF00990 Diguanylate cyclase, GGDEF domain YPD8_0695 PF03707 Bacterial signalling protein N terminal repeat YPD8_0695 PF13188 PAS domain YPD8_0696 PF00665 Integrase core domain YPD8_0696 PF13333 Integrase core domain YPD8_0696 PF13276 HTH-like domain YPD8_0699 PF07715 TonB-dependent Receptor Plug Domain YPD8_0699 PF00593 TonB dependent receptor YPD8_0700 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPD8_0701 PF04183 IucA / IucC family YPD8_0701 PF06276 Ferric iron reductase FhuF-like transporter YPD8_0703 PF04183 IucA / IucC family YPD8_0703 PF06276 Ferric iron reductase FhuF-like transporter YPD8_0704 PF06276 Ferric iron reductase FhuF-like transporter YPD8_0704 PF04183 IucA / IucC family YPD8_0708 PF00196 Bacterial regulatory proteins, luxR family YPD8_0708 PF03472 Autoinducer binding domain YPD8_0709 PF00765 Autoinducer synthase YPD8_0710 PF02517 CPBP intramembrane metalloprotease YPD8_0715 PF00691 OmpA family YPD8_0715 PF05736 OprF membrane domain YPD8_0717 PF00004 ATPase family associated with various cellular activities (AAA) YPD8_0717 PF07724 AAA domain (Cdc48 subfamily) YPD8_0717 PF17871 AAA lid domain YPD8_0717 PF10431 C-terminal, D2-small domain, of ClpB protein YPD8_0721 PF01276 Orn/Lys/Arg decarboxylase, major domain YPD8_0721 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPD8_0721 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPD8_0722 PF13407 Periplasmic binding protein domain YPD8_0723 PF00005 ABC transporter YPD8_0724 PF02653 Branched-chain amino acid transport system / permease component YPD8_0725 PF07715 TonB-dependent Receptor Plug Domain YPD8_0727 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain YPD8_0727 PF01464 Transglycosylase SLT domain YPD8_0728 PF00730 HhH-GPD superfamily base excision DNA repair protein YPD8_0728 PF10576 Iron-sulfur binding domain of endonuclease III YPD8_0728 PF14815 NUDIX domain YPD8_0728 PF00633 Helix-hairpin-helix motif YPD8_0729 PF02390 Putative methyltransferase YPD8_0730 PF04320 Protein with unknown function (DUF469) YPD8_0731 PF04960 Glutaminase YPD8_0732 PF11101 Protein of unknown function (DUF2884) YPD8_0733 PF12146 Serine aminopeptidase, S33 YPD8_0733 PF11647 Membrane Localization Domain YPD8_0733 PF07634 RtxA repeat YPD8_0733 PF16671 Actin cross-linking domain YPD8_0733 PF11713 Peptidase C80 family YPD8_0734 PF04055 Radical SAM superfamily YPD8_0734 PF06969 HemN C-terminal domain YPD8_0735 PF01725 Ham1 family YPD8_0736 PF02325 YGGT family YPD8_0737 PF14748 Pyrroline-5-carboxylate reductase dimerisation YPD8_0737 PF03807 NADP oxidoreductase coenzyme F420-dependent YPD8_0738 PF01168 Alanine racemase, N-terminal domain YPD8_0739 PF00437 Type II/IV secretion system protein YPD8_0740 PF04371 Porphyromonas-type peptidyl-arginine deiminase YPD8_0741 PF00795 Carbon-nitrogen hydrolase YPD8_0742 PF03652 Holliday junction resolvase YPD8_0743 PF02622 Uncharacterized ACR, COG1678 YPD8_0744 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain YPD8_0744 PF02951 Prokaryotic glutathione synthetase, N-terminal domain YPD8_0745 PF04452 RNA methyltransferase YPD8_0746 PF04231 Endonuclease I YPD8_0747 PF17283 SprT-like zinc ribbon domain YPD8_0747 PF10263 SprT-like family YPD8_0748 PF00438 S-adenosylmethionine synthetase, N-terminal domain YPD8_0748 PF02772 S-adenosylmethionine synthetase, central domain YPD8_0748 PF02773 S-adenosylmethionine synthetase, C-terminal domain YPD8_0749 PF17810 Arginine decarboxylase helical bundle domain YPD8_0749 PF17944 Arginine decarboxylase C-terminal helical extension YPD8_0749 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPD8_0751 PF01435 Peptidase family M48 YPD8_0752 PF02779 Transketolase, pyrimidine binding domain YPD8_0752 PF02780 Transketolase, C-terminal domain YPD8_0752 PF00456 Transketolase, thiamine diphosphate binding domain YPD8_0753 PF01797 Transposase IS200 like YPD8_0754 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPD8_0754 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPD8_0755 PF00162 Phosphoglycerate kinase YPD8_0756 PF01116 Fructose-bisphosphate aldolase class-II YPD8_0757 PF05552 Conserved TM helix YPD8_0757 PF00924 Mechanosensitive ion channel YPD8_0758 PF01810 LysE type translocator YPD8_0759 PF04402 Protein of unknown function (DUF541) YPD8_0760 PF03466 LysR substrate binding domain YPD8_0760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_0761 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPD8_0762 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPD8_0762 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPD8_0762 PF01842 ACT domain YPD8_0763 PF01812 5-formyltetrahydrofolate cyclo-ligase family YPD8_0764 PF05164 Cell division protein ZapA YPD8_0765 PF03695 Uncharacterised protein family (UPF0149) YPD8_0766 PF00557 Metallopeptidase family M24 YPD8_0766 PF05195 Aminopeptidase P, N-terminal domain YPD8_0767 PF01494 FAD binding domain YPD8_0768 PF01494 FAD binding domain YPD8_0769 PF08669 Glycine cleavage T-protein C-terminal barrel domain YPD8_0769 PF01571 Aminomethyltransferase folate-binding domain YPD8_0770 PF01597 Glycine cleavage H-protein YPD8_0771 PF02347 Glycine cleavage system P-protein YPD8_0773 PF13018 Extended Signal Peptide of Type V secretion system YPD8_0773 PF05662 Coiled stalk of trimeric autotransporter adhesin YPD8_0773 PF05662 Coiled stalk of trimeric autotransporter adhesin YPD8_0773 PF13018 Extended Signal Peptide of Type V secretion system YPD8_0773 PF05658 Head domain of trimeric autotransporter adhesin YPD8_0773 PF05658 Head domain of trimeric autotransporter adhesin YPD8_0773 PF03895 YadA-like membrane anchor domain YPD8_0773 PF03895 YadA-like membrane anchor domain YPD8_0775 PF03006 Haemolysin-III related YPD8_0777 PF01571 Aminomethyltransferase folate-binding domain YPD8_0778 PF07254 Membrane-bound toxin component of toxin-antitoxin system YPD8_0779 PF00072 Response regulator receiver domain YPD8_0779 PF00486 Transcriptional regulatory protein, C terminal YPD8_0780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_0780 PF00672 HAMP domain YPD8_0780 PF00512 His Kinase A (phospho-acceptor) domain YPD8_0781 PF06123 Inner membrane protein CreD YPD8_0782 PF00258 Flavodoxin YPD8_0783 PF02899 Phage integrase, N-terminal SAM-like domain YPD8_0783 PF00589 Phage integrase family YPD8_0784 PF10411 Disulfide bond isomerase protein N-terminus YPD8_0784 PF13098 Thioredoxin-like domain YPD8_0785 PF01368 DHH family YPD8_0785 PF17768 RecJ OB domain YPD8_0785 PF02272 DHHA1 domain YPD8_0786 PF00472 RF-1 domain YPD8_0786 PF03462 PCRF domain YPD8_0787 PF00152 tRNA synthetases class II (D, K and N) YPD8_0787 PF01336 OB-fold nucleic acid binding domain YPD8_0788 PF13356 Arm DNA-binding domain YPD8_0788 PF14659 Phage integrase, N-terminal SAM-like domain YPD8_0788 PF00589 Phage integrase family YPD8_0790 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA YPD8_0801 PF03551 Transcriptional regulator PadR-like family YPD8_0802 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family YPD8_0804 PF13407 Periplasmic binding protein domain YPD8_0805 PF02653 Branched-chain amino acid transport system / permease component YPD8_0806 PF00005 ABC transporter YPD8_0807 PF17912 MalK OB fold domain YPD8_0807 PF00005 ABC transporter YPD8_0808 PF13416 Bacterial extracellular solute-binding protein YPD8_0809 PF13416 Bacterial extracellular solute-binding protein YPD8_0810 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_0811 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_0812 PF07745 Glycosyl hydrolase family 53 YPD8_0813 PF02449 Beta-galactosidase YPD8_0813 PF08532 Beta-galactosidase trimerisation domain YPD8_0813 PF08533 Beta-galactosidase C-terminal domain YPD8_0814 PF02378 Phosphotransferase system, EIIC YPD8_0814 PF00367 phosphotransferase system, EIIB YPD8_0815 PF02264 LamB porin YPD8_0816 PF02264 LamB porin YPD8_0817 PF00356 Bacterial regulatory proteins, lacI family YPD8_0818 PF13802 Galactose mutarotase-like YPD8_0818 PF17137 Domain of unknown function (DUF5110) YPD8_0818 PF16338 Domain of unknown function (DUF4968) YPD8_0818 PF01055 Glycosyl hydrolases family 31 YPD8_0819 PF07690 Major Facilitator Superfamily YPD8_0820 PF00356 Bacterial regulatory proteins, lacI family YPD8_0822 PF01116 Fructose-bisphosphate aldolase class-II YPD8_0824 PF00884 Sulfatase YPD8_0825 PF13186 Iron-sulfur cluster-binding domain YPD8_0825 PF04055 Radical SAM superfamily YPD8_0828 PF01979 Amidohydrolase family YPD8_0829 PF03610 PTS system fructose IIA component YPD8_0830 PF03613 PTS system mannose/fructose/sorbose family IID component YPD8_0831 PF03609 PTS system sorbose-specific iic component YPD8_0832 PF03830 PTS system sorbose subfamily IIB component YPD8_0833 PF01380 SIS domain YPD8_0834 PF01380 SIS domain YPD8_0835 PF08013 Tagatose 6 phosphate kinase YPD8_0836 PF00455 DeoR C terminal sensor domain YPD8_0836 PF08220 DeoR-like helix-turn-helix domain YPD8_0837 PF00884 Sulfatase YPD8_0838 PF01797 Transposase IS200 like YPD8_0839 PF01797 Transposase IS200 like YPD8_0840 PF02796 Helix-turn-helix domain of resolvase YPD8_0840 PF00665 Integrase core domain YPD8_0841 PF01695 IstB-like ATP binding protein YPD8_0842 PF02278 Polysaccharide lyase family 8, super-sandwich domain YPD8_0842 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain YPD8_0842 PF09093 Lyase, catalytic YPD8_0842 PF09092 Lyase, N terminal YPD8_0846 PF00484 Carbonic anhydrase YPD8_0849 PF03958 Bacterial type II/III secretion system short domain YPD8_0849 PF00263 Bacterial type II and III secretion system protein YPD8_0851 PF00482 Type II secretion system (T2SS), protein F YPD8_0852 PF08334 Type II secretion system (T2SS), protein G YPD8_0852 PF07963 Prokaryotic N-terminal methylation motif YPD8_0857 PF06750 Bacterial Peptidase A24 N-terminal domain YPD8_0857 PF01478 Type IV leader peptidase family YPD8_0860 PF00672 HAMP domain YPD8_0860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPD8_0860 PF02203 Tar ligand binding domain homologue YPD8_0863 PF03466 LysR substrate binding domain YPD8_0863 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_0864 PF07690 Major Facilitator Superfamily YPD8_0865 PF03466 LysR substrate binding domain YPD8_0865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_0866 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPD8_0866 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain YPD8_0867 PF00356 Bacterial regulatory proteins, lacI family YPD8_0870 PF00501 AMP-binding enzyme YPD8_0870 PF01553 Acyltransferase YPD8_0870 PF13193 AMP-binding enzyme C-terminal domain YPD8_0871 PF07690 Major Facilitator Superfamily YPD8_0872 PF00248 Aldo/keto reductase family YPD8_0873 PF02976 DNA mismatch repair enzyme MutH YPD8_0874 PF00293 NUDIX domain YPD8_0875 PF05524 PEP-utilising enzyme, N-terminal YPD8_0875 PF01590 GAF domain YPD8_0875 PF02896 PEP-utilising enzyme, TIM barrel domain YPD8_0875 PF00391 PEP-utilising enzyme, mobile domain YPD8_0876 PF01790 Prolipoprotein diacylglyceryl transferase YPD8_0877 PF00303 Thymidylate synthase YPD8_0879 PF00665 Integrase core domain YPD8_0879 PF02796 Helix-turn-helix domain of resolvase YPD8_0880 PF01695 IstB-like ATP binding protein YPD8_0881 PF02801 Beta-ketoacyl synthase, C-terminal domain YPD8_0881 PF00109 Beta-ketoacyl synthase, N-terminal domain YPD8_0882 PF01797 Transposase IS200 like YPD8_0883 PF03886 ABC-type transport auxiliary lipoprotein component YPD8_0884 PF02470 MlaD protein YPD8_0885 PF04403 Paraquat-inducible protein A YPD8_0886 PF16326 ABC transporter C-terminal domain YPD8_0886 PF00005 ABC transporter YPD8_0886 PF12848 ABC transporter YPD8_0887 PF10672 S-adenosylmethionine-dependent methyltransferase YPD8_0887 PF01170 Putative RNA methylase family UPF0020 YPD8_0887 PF02926 THUMP domain YPD8_0888 PF03473 MOSC domain YPD8_0888 PF00111 2Fe-2S iron-sulfur cluster binding domain YPD8_0888 PF03476 MOSC N-terminal beta barrel domain YPD8_0889 PF07126 Cell-division protein ZapC YPD8_0890 PF01180 Dihydroorotate dehydrogenase YPD8_0891 PF01433 Peptidase family M1 domain YPD8_0891 PF17432 Domain of unknown function (DUF3458_C) ARM repeats YPD8_0891 PF11940 Domain of unknown function (DUF3458) Ig-like fold YPD8_0892 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family YPD8_0892 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain YPD8_0893 PF00152 tRNA synthetases class II (D, K and N) YPD8_0893 PF01336 OB-fold nucleic acid binding domain YPD8_0894 PF00267 Gram-negative porin YPD8_0895 PF00155 Aminotransferase class I and II YPD8_0896 PF00753 Metallo-beta-lactamase superfamily YPD8_0897 PF05951 Bacterial protein of unknown function (DUF882) YPD8_0898 PF01471 Putative peptidoglycan binding domain YPD8_0898 PF03734 L,D-transpeptidase catalytic domain YPD8_0899 PF01797 Transposase IS200 like YPD8_0900 PF16330 MukB hinge domain YPD8_0900 PF04310 MukB N-terminal YPD8_0901 PF04288 MukE-like family YPD8_0902 PF17192 MukF middle domain YPD8_0902 PF03882 MukF winged-helix domain YPD8_0902 PF17193 MukF C-terminal domain YPD8_0904 PF01636 Phosphotransferase enzyme family YPD8_0905 PF02348 Cytidylyltransferase YPD8_0906 PF07063 Domain of unknown function (DUF1338) YPD8_0907 PF02606 Tetraacyldisaccharide-1-P 4'-kinase YPD8_0908 PF00664 ABC transporter transmembrane region YPD8_0908 PF00005 ABC transporter YPD8_0909 PF03772 Competence protein YPD8_0909 PF00753 Metallo-beta-lactamase superfamily YPD8_0910 PF00575 S1 RNA binding domain YPD8_0911 PF02224 Cytidylate kinase YPD8_0912 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPD8_0913 PF00266 Aminotransferase class-V YPD8_0915 PF13018 Extended Signal Peptide of Type V secretion system YPD8_0915 PF03895 YadA-like membrane anchor domain YPD8_0915 PF03895 YadA-like membrane anchor domain YPD8_0915 PF05662 Coiled stalk of trimeric autotransporter adhesin YPD8_0915 PF05658 Head domain of trimeric autotransporter adhesin YPD8_0915 PF05658 Head domain of trimeric autotransporter adhesin YPD8_0915 PF13018 Extended Signal Peptide of Type V secretion system YPD8_0915 PF05662 Coiled stalk of trimeric autotransporter adhesin YPD8_0916 PF00710 Asparaginase, N-terminal YPD8_0916 PF17763 Glutaminase/Asparaginase C-terminal domain YPD8_0917 PF18381 YcaO cyclodehydratase C-terminal domain YPD8_0917 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding YPD8_0918 PF01226 Formate/nitrite transporter YPD8_0919 PF02901 Pyruvate formate lyase-like YPD8_0919 PF01228 Glycine radical YPD8_0921 PF04055 Radical SAM superfamily YPD8_0922 PF07690 Major Facilitator Superfamily YPD8_0923 PF02403 Seryl-tRNA synthetase N-terminal domain YPD8_0923 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPD8_0924 PF00004 ATPase family associated with various cellular activities (AAA) YPD8_0924 PF12002 MgsA AAA+ ATPase C terminal YPD8_0924 PF16193 AAA C-terminal domain YPD8_0925 PF03548 Outer membrane lipoprotein carrier protein LolA YPD8_0926 PF01580 FtsK/SpoIIIE family YPD8_0926 PF09397 Ftsk gamma domain YPD8_0926 PF17854 FtsK alpha domain YPD8_0926 PF13491 4TM region of DNA translocase FtsK/SpoIIIE YPD8_0927 PF01037 Lrp/AsnC ligand binding domain YPD8_0928 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD8_0929 PF00005 ABC transporter YPD8_0929 PF00664 ABC transporter transmembrane region YPD8_0930 PF00005 ABC transporter YPD8_0930 PF00664 ABC transporter transmembrane region YPD8_0931 PF03588 Leucyl/phenylalanyl-tRNA protein transferase YPD8_0932 PF01797 Transposase IS200 like YPD8_0933 PF00004 ATPase family associated with various cellular activities (AAA) YPD8_0933 PF10431 C-terminal, D2-small domain, of ClpB protein YPD8_0933 PF17871 AAA lid domain YPD8_0933 PF02861 Clp amino terminal domain, pathogenicity island component YPD8_0933 PF07724 AAA domain (Cdc48 subfamily) YPD8_0934 PF02617 ATP-dependent Clp protease adaptor protein ClpS YPD8_0935 PF02687 FtsX-like permease family YPD8_0935 PF00005 ABC transporter YPD8_0935 PF12704 MacB-like periplasmic core domain YPD8_0936 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD8_0937 PF04393 Protein of unknown function (DUF535) YPD8_0938 PF11398 Protein of unknown function (DUF2813) YPD8_0939 PF03956 Lysine exporter LysO YPD8_0940 PF03063 Prismane/CO dehydrogenase family YPD8_0941 PF00111 2Fe-2S iron-sulfur cluster binding domain YPD8_0941 PF00175 Oxidoreductase NAD-binding domain YPD8_0941 PF00970 Oxidoreductase FAD-binding domain YPD8_0942 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPD8_0942 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPD8_0942 PF00205 Thiamine pyrophosphate enzyme, central domain YPD8_0943 PF01212 Beta-eliminating lyase YPD8_0944 PF13460 NAD(P)H-binding YPD8_0944 PF11066 Protein of unknown function (DUF2867) YPD8_0945 PF01370 NAD dependent epimerase/dehydratase family YPD8_0946 PF12883 Protein of unknown function (DUF3828) YPD8_0947 PF01817 Chorismate mutase type II YPD8_0948 PF00005 ABC transporter YPD8_0949 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD8_0950 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_0951 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_0952 PF00892 EamA-like transporter family YPD8_0953 PF10100 Staphylopine dehydrogenase YPD8_0954 PF03059 Nicotianamine synthase protein YPD8_0955 PF00005 ABC transporter YPD8_0957 PF01032 FecCD transport family YPD8_0960 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD8_0961 PF05958 tRNA (Uracil-5-)-methyltransferase YPD8_0962 PF10767 Protein of unknown function (DUF2593) YPD8_0963 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_0964 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_0965 PF08402 TOBE domain YPD8_0965 PF00005 ABC transporter YPD8_0966 PF13416 Bacterial extracellular solute-binding protein YPD8_0967 PF10722 Putative bacterial sensory transduction regulator YPD8_0968 PF07214 Protein of unknown function (DUF1418) YPD8_0969 PF02080 TrkA-C domain YPD8_0969 PF06826 Predicted Permease Membrane Region YPD8_0971 PF01569 PAP2 superfamily YPD8_0972 PF01791 DeoC/LacD family aldolase YPD8_0973 PF08220 DeoR-like helix-turn-helix domain YPD8_0973 PF00455 DeoR C terminal sensor domain YPD8_0975 PF00768 D-alanyl-D-alanine carboxypeptidase YPD8_0975 PF07943 Penicillin-binding protein 5, C-terminal domain YPD8_0976 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_0977 PF00005 ABC transporter YPD8_0977 PF09383 NIL domain YPD8_0978 PF03180 NLPA lipoprotein YPD8_0981 PF13417 Glutathione S-transferase, N-terminal domain YPD8_0981 PF00043 Glutathione S-transferase, C-terminal domain YPD8_0982 PF07715 TonB-dependent Receptor Plug Domain YPD8_0982 PF00593 TonB dependent receptor YPD8_0983 PF00005 ABC transporter YPD8_0984 PF01032 FecCD transport family YPD8_0987 PF00324 Amino acid permease YPD8_0988 PF03466 LysR substrate binding domain YPD8_0988 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_0989 PF03601 Conserved hypothetical protein 698 YPD8_0990 PF01261 Xylose isomerase-like TIM barrel YPD8_0991 PF13954 PapC N-terminal domain YPD8_0991 PF00577 Outer membrane usher protein YPD8_0991 PF13953 PapC C-terminal domain YPD8_0992 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD8_0992 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD8_0994 PF17550 Family of unknown function YPD8_0995 PF00486 Transcriptional regulatory protein, C terminal YPD8_0996 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPD8_0996 PF02378 Phosphotransferase system, EIIC YPD8_0997 PF00294 pfkB family carbohydrate kinase YPD8_0998 PF00381 PTS HPr component phosphorylation site YPD8_0998 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPD8_0999 PF00293 NUDIX domain YPD8_1000 PF02653 Branched-chain amino acid transport system / permease component YPD8_1001 PF00005 ABC transporter YPD8_1003 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPD8_1004 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPD8_1004 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD8_1005 PF00171 Aldehyde dehydrogenase family YPD8_1007 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPD8_1007 PF01842 ACT domain YPD8_1007 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPD8_1009 PF03222 Tryptophan/tyrosine permease family YPD8_1010 PF09285 Elongation factor P, C-terminal YPD8_1010 PF01132 Elongation factor P (EF-P) OB domain YPD8_1010 PF08207 Elongation factor P (EF-P) KOW-like domain YPD8_1011 PF03786 D-mannonate dehydratase (UxuA) YPD8_1012 PF01232 Mannitol dehydrogenase Rossmann domain YPD8_1012 PF08125 Mannitol dehydrogenase C-terminal domain YPD8_1013 PF07729 FCD domain YPD8_1013 PF00392 Bacterial regulatory proteins, gntR family YPD8_1014 PF07683 Cobalamin synthesis protein cobW C-terminal domain YPD8_1014 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPD8_1015 PF01569 PAP2 superfamily YPD8_1016 PF00877 NlpC/P60 family YPD8_1017 PF00563 EAL domain YPD8_1017 PF12792 CSS motif domain associated with EAL YPD8_1018 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPD8_1019 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_1020 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_1020 PF12911 N-terminal TM domain of oligopeptide transport permease C YPD8_1021 PF00005 ABC transporter YPD8_1021 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPD8_1022 PF13989 YejG-like protein YPD8_1023 PF07690 Major Facilitator Superfamily YPD8_1024 PF01479 S4 domain YPD8_1024 PF00849 RNA pseudouridylate synthase YPD8_1025 PF00271 Helicase conserved C-terminal domain YPD8_1025 PF04851 Type III restriction enzyme, res subunit YPD8_1026 PF01797 Transposase IS200 like YPD8_1029 PF11893 Domain of unknown function (DUF3413) YPD8_1029 PF00884 Sulfatase YPD8_1031 PF05638 Type VI secretion system effector, Hcp YPD8_1034 PF00232 Glycosyl hydrolase family 1 YPD8_1035 PF01380 SIS domain YPD8_1035 PF01418 Helix-turn-helix domain, rpiR family YPD8_1036 PF07484 Phage Tail Collar Domain YPD8_1038 PF04865 Baseplate J-like protein YPD8_1046 PF17482 Phage tail sheath C-terminal domain YPD8_1046 PF04984 Phage tail sheath protein subtilisin-like domain YPD8_1048 PF01261 Xylose isomerase-like TIM barrel YPD8_1049 PF08220 DeoR-like helix-turn-helix domain YPD8_1049 PF00455 DeoR C terminal sensor domain YPD8_1050 PF00596 Class II Aldolase and Adducin N-terminal domain YPD8_1051 PF07005 Sugar-binding N-terminal domain YPD8_1051 PF17042 Nucleotide-binding C-terminal domain YPD8_1052 PF06530 Phage antitermination protein Q YPD8_1053 PF01381 Helix-turn-helix YPD8_1053 PF00717 Peptidase S24-like YPD8_1054 PF01278 Omptin family YPD8_1055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPD8_1055 PF00672 HAMP domain YPD8_1055 PF02743 Cache domain YPD8_1056 PF12706 Beta-lactamase superfamily domain YPD8_1058 PF00144 Beta-lactamase YPD8_1059 PF01797 Transposase IS200 like YPD8_1060 PF00267 Gram-negative porin YPD8_1061 PF07690 Major Facilitator Superfamily YPD8_1062 PF01627 Hpt domain YPD8_1062 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_1062 PF16359 RcsD-ABL domain YPD8_1063 PF01627 Hpt domain YPD8_1063 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_1063 PF16359 RcsD-ABL domain YPD8_1064 PF00072 Response regulator receiver domain YPD8_1064 PF00196 Bacterial regulatory proteins, luxR family YPD8_1065 PF00072 Response regulator receiver domain YPD8_1065 PF09456 RcsC Alpha-Beta-Loop (ABL) YPD8_1065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_1065 PF00512 His Kinase A (phospho-acceptor) domain YPD8_1066 PF00521 DNA gyrase/topoisomerase IV, subunit A YPD8_1066 PF03989 DNA gyrase C-terminal domain, beta-propeller YPD8_1068 PF00317 Ribonucleotide reductase, all-alpha domain YPD8_1068 PF03477 ATP cone domain YPD8_1068 PF02867 Ribonucleotide reductase, barrel domain YPD8_1069 PF00268 Ribonucleotide reductase, small chain YPD8_1070 PF03974 Ecotin YPD8_1071 PF00994 Probable molybdopterin binding domain YPD8_1072 PF03222 Tryptophan/tyrosine permease family YPD8_1073 PF07437 YfaZ precursor YPD8_1074 PF06628 Catalase-related immune-responsive YPD8_1074 PF00199 Catalase YPD8_1075 PF13307 Helicase C-terminal domain YPD8_1075 PF06733 DEAD_2 YPD8_1076 PF00267 Gram-negative porin YPD8_1077 PF00892 EamA-like transporter family YPD8_1078 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPD8_1078 PF01276 Orn/Lys/Arg decarboxylase, major domain YPD8_1078 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPD8_1079 PF13520 Amino acid permease YPD8_1080 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_1081 PF00005 ABC transporter YPD8_1082 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_1083 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPD8_1084 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPD8_1085 PF00581 Rhodanese-like domain YPD8_1088 PF00005 ABC transporter YPD8_1089 PF00005 ABC transporter YPD8_1090 PF02653 Branched-chain amino acid transport system / permease component YPD8_1091 PF02653 Branched-chain amino acid transport system / permease component YPD8_1092 PF13188 PAS domain YPD8_1092 PF02954 Bacterial regulatory protein, Fis family YPD8_1092 PF00158 Sigma-54 interaction domain YPD8_1093 PF07308 Protein of unknown function (DUF1456) YPD8_1094 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_1095 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_1097 PF00005 ABC transporter YPD8_1099 PF01844 HNH endonuclease YPD8_1100 PF01928 CYTH domain YPD8_1101 PF09330 D-lactate dehydrogenase, membrane binding YPD8_1101 PF01565 FAD binding domain YPD8_1102 PF00768 D-alanyl-D-alanine carboxypeptidase YPD8_1103 PF01207 Dihydrouridine synthase (Dus) YPD8_1105 PF01797 Transposase IS200 like YPD8_1106 PF03825 Nucleoside H+ symporter YPD8_1107 PF01048 Phosphorylase superfamily YPD8_1109 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_1109 PF03466 LysR substrate binding domain YPD8_1110 PF02028 BCCT, betaine/carnitine/choline family transporter YPD8_1111 PF00440 Bacterial regulatory proteins, tetR family YPD8_1111 PF13977 BetI-type transcriptional repressor, C-terminal YPD8_1112 PF00171 Aldehyde dehydrogenase family YPD8_1113 PF00732 GMC oxidoreductase YPD8_1113 PF05199 GMC oxidoreductase YPD8_1114 PF01797 Transposase IS200 like YPD8_1115 PF01027 Inhibitor of apoptosis-promoting Bax1 YPD8_1116 PF02391 MoaE protein YPD8_1117 PF01967 MoaC family YPD8_1118 PF06463 Molybdenum Cofactor Synthesis C YPD8_1118 PF04055 Radical SAM superfamily YPD8_1119 PF01933 Uncharacterised protein family UPF0052 YPD8_1120 PF17757 UvrB interaction domain YPD8_1120 PF12344 Ultra-violet resistance protein B YPD8_1120 PF02151 UvrB/uvrC motif YPD8_1120 PF04851 Type III restriction enzyme, res subunit YPD8_1120 PF00271 Helicase conserved C-terminal domain YPD8_1123 PF08241 Methyltransferase domain YPD8_1124 PF00155 Aminotransferase class I and II YPD8_1125 PF04055 Radical SAM superfamily YPD8_1125 PF06968 Biotin and Thiamin Synthesis associated domain YPD8_1126 PF00202 Aminotransferase class-III YPD8_1127 PF00202 Aminotransferase class-III YPD8_1128 PF10282 Lactonase, 7-bladed beta-propeller YPD8_1130 PF03459 TOBE domain YPD8_1130 PF00005 ABC transporter YPD8_1131 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_1133 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_1133 PF03459 TOBE domain YPD8_1134 PF00005 ABC transporter YPD8_1136 PF16363 GDP-mannose 4,6 dehydratase YPD8_1137 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain YPD8_1137 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain YPD8_1138 PF10509 Galactokinase galactose-binding signature YPD8_1138 PF08544 GHMP kinases C terminal YPD8_1138 PF00288 GHMP kinases N terminal domain YPD8_1139 PF01263 Aldose 1-epimerase YPD8_1141 PF00300 Histidine phosphatase superfamily (branch 1) YPD8_1142 PF02796 Helix-turn-helix domain of resolvase YPD8_1142 PF00665 Integrase core domain YPD8_1143 PF01695 IstB-like ATP binding protein YPD8_1144 PF00793 DAHP synthetase I family YPD8_1145 PF01545 Cation efflux family YPD8_1146 PF04973 Nicotinamide mononucleotide transporter YPD8_1147 PF02445 Quinolinate synthetase A protein YPD8_1148 PF13174 Tetratricopeptide repeat YPD8_1148 PF16331 TolA binding protein trimerisation YPD8_1149 PF00691 OmpA family YPD8_1150 PF04052 TolB amino-terminal domain YPD8_1150 PF07676 WD40-like Beta Propeller Repeat YPD8_1151 PF06519 TolA C-terminal YPD8_1153 PF02472 Biopolymer transport protein ExbD/TolR YPD8_1154 PF01618 MotA/TolQ/ExbB proton channel family YPD8_1155 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) YPD8_1156 PF02322 Cytochrome bd terminal oxidase subunit II YPD8_1157 PF01654 Cytochrome bd terminal oxidase subunit I YPD8_1158 PF00549 CoA-ligase YPD8_1158 PF02629 CoA binding domain YPD8_1159 PF00549 CoA-ligase YPD8_1159 PF08442 ATP-grasp domain YPD8_1160 PF02817 e3 binding domain YPD8_1160 PF00364 Biotin-requiring enzyme YPD8_1160 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPD8_1161 PF16870 2-oxoglutarate dehydrogenase C-terminal YPD8_1161 PF00676 Dehydrogenase E1 component YPD8_1161 PF16078 2-oxoglutarate dehydrogenase N-terminus YPD8_1161 PF02779 Transketolase, pyrimidine binding domain YPD8_1162 PF13085 2Fe-2S iron-sulfur cluster binding domain YPD8_1163 PF02910 Fumarate reductase flavoprotein C-term YPD8_1163 PF00890 FAD binding domain YPD8_1164 PF02910 Fumarate reductase flavoprotein C-term YPD8_1164 PF00890 FAD binding domain YPD8_1165 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YPD8_1166 PF00285 Citrate synthase, C-terminal domain YPD8_1167 PF01025 GrpE YPD8_1168 PF01513 ATP-NAD kinase YPD8_1169 PF02463 RecF/RecN/SMC N terminal domain YPD8_1170 PF04355 SmpA / OmlA family YPD8_1171 PF03364 Polyketide cyclase / dehydrase and lipid transport YPD8_1172 PF01668 SmpB protein YPD8_1173 PF01797 Transposase IS200 like YPD8_1174 PF00589 Phage integrase family YPD8_1174 PF13356 Arm DNA-binding domain YPD8_1181 PF02796 Helix-turn-helix domain of resolvase YPD8_1181 PF00665 Integrase core domain YPD8_1182 PF01695 IstB-like ATP binding protein YPD8_1186 PF17946 RecC C-terminal domain YPD8_1187 PF05193 Peptidase M16 inactive domain YPD8_1187 PF00675 Insulinase (Peptidase family M16) YPD8_1187 PF16187 Middle or third domain of peptidase_M16 YPD8_1188 PF00580 UvrD/REP helicase N-terminal domain YPD8_1188 PF13361 UvrD-like helicase C-terminal domain YPD8_1188 PF12705 PD-(D/E)XK nuclease superfamily YPD8_1189 PF13538 UvrD-like helicase C-terminal domain YPD8_1190 PF00696 Amino acid kinase family YPD8_1190 PF00583 Acetyltransferase (GNAT) family YPD8_1191 PF01520 N-acetylmuramoyl-L-alanine amidase YPD8_1191 PF11741 AMIN domain YPD8_1192 PF06725 3D domain YPD8_1192 PF03562 MltA specific insert domain YPD8_1193 PF00899 ThiF family YPD8_1194 PF02657 Fe-S metabolism associated domain YPD8_1195 PF00266 Aminotransferase class-V YPD8_1196 PF03466 LysR substrate binding domain YPD8_1196 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_1197 PF04241 Protein of unknown function (DUF423) YPD8_1198 PF01728 FtsJ-like methyltransferase YPD8_1198 PF18125 RlmM ferredoxin-like domain YPD8_1199 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPD8_1199 PF01367 5'-3' exonuclease, C-terminal SAM fold YPD8_1200 PF03641 Possible lysine decarboxylase YPD8_1200 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases YPD8_1200 PF11892 Domain of unknown function (DUF3412) YPD8_1201 PF14489 QueF-like protein YPD8_1201 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term YPD8_1202 PF07348 Syd protein (SUKH-2) YPD8_1203 PF01797 Transposase IS200 like YPD8_1204 PF04287 tRNA pseudouridine synthase C YPD8_1205 PF00849 RNA pseudouridylate synthase YPD8_1206 PF00258 Flavodoxin YPD8_1207 PF11944 Protein of unknown function (DUF3461) YPD8_1208 PF00132 Bacterial transferase hexapeptide (six repeats) YPD8_1208 PF14602 Hexapeptide repeat of succinyl-transferase YPD8_1208 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal YPD8_1209 PF01966 HD domain YPD8_1209 PF08335 GlnD PII-uridylyltransferase YPD8_1209 PF01909 Nucleotidyltransferase domain YPD8_1209 PF01842 ACT domain YPD8_1210 PF00557 Metallopeptidase family M24 YPD8_1211 PF00318 Ribosomal protein S2 YPD8_1212 PF00889 Elongation factor TS YPD8_1213 PF00696 Amino acid kinase family YPD8_1214 PF01765 Ribosome recycling factor YPD8_1215 PF13288 DXP reductoisomerase C-terminal domain YPD8_1215 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase YPD8_1215 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain YPD8_1216 PF01255 Putative undecaprenyl diphosphate synthase YPD8_1218 PF17820 PDZ domain YPD8_1218 PF02163 Peptidase family M50 YPD8_1219 PF07244 Surface antigen variable number repeat YPD8_1219 PF01103 Surface antigen YPD8_1220 PF03938 Outer membrane protein (OmpH-like) YPD8_1221 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD YPD8_1221 PF00132 Bacterial transferase hexapeptide (six repeats) YPD8_1222 PF07977 FabA-like domain YPD8_1223 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 YPD8_1223 PF00132 Bacterial transferase hexapeptide (six repeats) YPD8_1224 PF02684 Lipid-A-disaccharide synthetase YPD8_1225 PF01351 Ribonuclease HII YPD8_1226 PF01336 OB-fold nucleic acid binding domain YPD8_1226 PF07733 Bacterial DNA polymerase III alpha NTPase domain YPD8_1226 PF14579 Helix-hairpin-helix motif YPD8_1226 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YPD8_1226 PF02811 PHP domain YPD8_1227 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit YPD8_1228 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPD8_1229 PF09179 TilS substrate binding domain YPD8_1229 PF11734 TilS substrate C-terminal domain YPD8_1229 PF01171 PP-loop family YPD8_1230 PF11734 TilS substrate C-terminal domain YPD8_1230 PF01171 PP-loop family YPD8_1230 PF09179 TilS substrate binding domain YPD8_1231 PF00034 Cytochrome c YPD8_1232 PF07152 YaeQ protein YPD8_1233 PF00472 RF-1 domain YPD8_1234 PF04170 NlpE N-terminal domain YPD8_1234 PF17185 NlpE C-terminal OB domain YPD8_1235 PF03129 Anticodon binding domain YPD8_1235 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPD8_1235 PF04073 Aminoacyl-tRNA editing domain YPD8_1236 PF01980 tRNA-methyltransferase O YPD8_1236 PF18389 TrmO C-terminal domain YPD8_1237 PF16358 RcsF lipoprotein YPD8_1238 PF03180 NLPA lipoprotein YPD8_1239 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_1240 PF09383 NIL domain YPD8_1240 PF00005 ABC transporter YPD8_1242 PF00248 Aldo/keto reductase family YPD8_1244 PF03372 Endonuclease/Exonuclease/phosphatase family YPD8_1245 PF01476 LysM domain YPD8_1245 PF01464 Transglycosylase SLT domain YPD8_1246 PF01476 LysM domain YPD8_1246 PF01464 Transglycosylase SLT domain YPD8_1247 PF00753 Metallo-beta-lactamase superfamily YPD8_1247 PF16123 Hydroxyacylglutathione hydrolase C-terminus YPD8_1248 PF08241 Methyltransferase domain YPD8_1249 PF00075 RNase H YPD8_1250 PF00929 Exonuclease YPD8_1251 PF00929 Exonuclease YPD8_1252 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin YPD8_1253 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin YPD8_1254 PF01695 IstB-like ATP binding protein YPD8_1255 PF00665 Integrase core domain YPD8_1255 PF02796 Helix-turn-helix domain of resolvase YPD8_1256 PF02801 Beta-ketoacyl synthase, C-terminal domain YPD8_1256 PF00109 Beta-ketoacyl synthase, N-terminal domain YPD8_1257 PF07977 FabA-like domain YPD8_1258 PF13654 AAA domain YPD8_1258 PF05362 Lon protease (S16) C-terminal proteolytic domain YPD8_1259 PF06303 MatP N-terminal domain YPD8_1259 PF17414 MatP C-terminal ribbon-helix-helix domain YPD8_1260 PF01797 Transposase IS200 like YPD8_1261 PF00691 OmpA family YPD8_1261 PF01389 OmpA-like transmembrane domain YPD8_1262 PF03846 Cell division inhibitor SulA YPD8_1263 PF04993 TfoX N-terminal domain YPD8_1263 PF04994 TfoX C-terminal domain YPD8_1264 PF12805 FUSC-like inner membrane protein yccS YPD8_1265 PF03733 Inner membrane component domain YPD8_1266 PF00580 UvrD/REP helicase N-terminal domain YPD8_1266 PF12462 DNA helicase IV / RNA helicase N terminal YPD8_1266 PF13361 UvrD-like helicase C-terminal domain YPD8_1267 PF02142 MGS-like domain YPD8_1268 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) YPD8_1269 PF13380 CoA binding domain YPD8_1270 PF08755 Hemimethylated DNA-binding protein YccV like YPD8_1271 PF17785 PUA-like domain YPD8_1271 PF10672 S-adenosylmethionine-dependent methyltransferase YPD8_1272 PF04358 DsrC like protein YPD8_1275 PF08031 Berberine and berberine like YPD8_1275 PF01565 FAD binding domain YPD8_1277 PF07977 FabA-like domain YPD8_1278 PF00109 Beta-ketoacyl synthase, N-terminal domain YPD8_1278 PF02801 Beta-ketoacyl synthase, C-terminal domain YPD8_1280 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal YPD8_1280 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal YPD8_1282 PF00378 Enoyl-CoA hydratase/isomerase YPD8_1285 PF00698 Acyl transferase domain YPD8_1290 PF05736 OprF membrane domain YPD8_1290 PF00691 OmpA family YPD8_1292 PF00004 ATPase family associated with various cellular activities (AAA) YPD8_1292 PF10431 C-terminal, D2-small domain, of ClpB protein YPD8_1292 PF17871 AAA lid domain YPD8_1292 PF07724 AAA domain (Cdc48 subfamily) YPD8_1293 PF07724 AAA domain (Cdc48 subfamily) YPD8_1293 PF10431 C-terminal, D2-small domain, of ClpB protein YPD8_1293 PF17871 AAA lid domain YPD8_1293 PF00004 ATPase family associated with various cellular activities (AAA) YPD8_1297 PF03400 IS1 transposase YPD8_1302 PF13592 Winged helix-turn helix YPD8_1302 PF13358 DDE superfamily endonuclease YPD8_1314 PF00005 ABC transporter YPD8_1314 PF12848 ABC transporter YPD8_1316 PF00872 Transposase, Mutator family YPD8_1317 PF03061 Thioesterase superfamily YPD8_1318 PF04279 Intracellular septation protein A YPD8_1322 PF03922 OmpW family YPD8_1324 PF00290 Tryptophan synthase alpha chain YPD8_1325 PF00291 Pyridoxal-phosphate dependent enzyme YPD8_1326 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase YPD8_1326 PF00218 Indole-3-glycerol phosphate synthase YPD8_1327 PF02885 Glycosyl transferase family, helical bundle domain YPD8_1327 PF00591 Glycosyl transferase family, a/b domain YPD8_1328 PF00117 Glutamine amidotransferase class-I YPD8_1329 PF04715 Anthranilate synthase component I, N terminal region YPD8_1329 PF00425 chorismate binding enzyme YPD8_1330 PF02811 PHP domain YPD8_1331 PF01300 Telomere recombination YPD8_1332 PF00849 RNA pseudouridylate synthase YPD8_1332 PF01479 S4 domain YPD8_1333 PF00849 RNA pseudouridylate synthase YPD8_1333 PF01479 S4 domain YPD8_1334 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YPD8_1335 PF00106 short chain dehydrogenase YPD8_1336 PF01343 Peptidase family S49 YPD8_1336 PF08496 Peptidase family S49 N-terminal YPD8_1337 PF08496 Peptidase family S49 N-terminal YPD8_1337 PF01343 Peptidase family S49 YPD8_1338 PF01751 Toprim domain YPD8_1338 PF01131 DNA topoisomerase YPD8_1338 PF08272 Topoisomerase I zinc-ribbon-like YPD8_1338 PF01396 Topoisomerase DNA binding C4 zinc finger YPD8_1339 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_1339 PF03466 LysR substrate binding domain YPD8_1341 PF00694 Aconitase C-terminal domain YPD8_1341 PF00330 Aconitase family (aconitate hydratase) YPD8_1342 PF00330 Aconitase family (aconitate hydratase) YPD8_1342 PF00694 Aconitase C-terminal domain YPD8_1343 PF00925 GTP cyclohydrolase II YPD8_1344 PF01569 PAP2 superfamily YPD8_1345 PF06305 Lipopolysaccharide assembly protein A domain YPD8_1346 PF18073 Rubredoxin metal binding domain YPD8_1348 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family YPD8_1349 PF01253 Translation initiation factor SUI1 YPD8_1350 PF00596 Class II Aldolase and Adducin N-terminal domain YPD8_1351 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPD8_1352 PF04328 Selenoprotein, putative YPD8_1353 PF02554 Carbon starvation protein CstA YPD8_1353 PF13722 5TM C-terminal transporter carbon starvation CstA YPD8_1354 PF00575 S1 RNA binding domain YPD8_1354 PF00773 RNB domain YPD8_1354 PF08206 Ribonuclease B OB domain YPD8_1354 PF17876 Cold shock domain YPD8_1355 PF07690 Major Facilitator Superfamily YPD8_1356 PF01370 NAD dependent epimerase/dehydratase family YPD8_1357 PF00730 HhH-GPD superfamily base excision DNA repair protein YPD8_1357 PF00633 Helix-hairpin-helix motif YPD8_1357 PF10576 Iron-sulfur binding domain of endonuclease III YPD8_1358 PF02508 Rnf-Nqr subunit, membrane protein YPD8_1359 PF04205 FMN-binding domain YPD8_1360 PF03116 NQR2, RnfD, RnfE family YPD8_1361 PF12833 Helix-turn-helix domain YPD8_1361 PF06445 GyrI-like small molecule binding domain YPD8_1362 PF10531 SLBB domain YPD8_1362 PF13375 RnfC Barrel sandwich hybrid domain YPD8_1362 PF13237 4Fe-4S dicluster domain YPD8_1362 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPD8_1363 PF04060 Putative Fe-S cluster YPD8_1364 PF02508 Rnf-Nqr subunit, membrane protein YPD8_1365 PF10754 Protein of unknown function (DUF2569) YPD8_1366 PF00005 ABC transporter YPD8_1366 PF00664 ABC transporter transmembrane region YPD8_1366 PF03412 Peptidase C39 family YPD8_1367 PF13533 Biotin-lipoyl like YPD8_1369 PF03412 Peptidase C39 family YPD8_1369 PF00664 ABC transporter transmembrane region YPD8_1369 PF00005 ABC transporter YPD8_1370 PF02610 L-arabinose isomerase YPD8_1370 PF11762 L-arabinose isomerase C-terminal domain YPD8_1371 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD8_1372 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPD8_1373 PF00005 ABC transporter YPD8_1374 PF02653 Branched-chain amino acid transport system / permease component YPD8_1375 PF12833 Helix-turn-helix domain YPD8_1375 PF02311 AraC-like ligand binding domain YPD8_1376 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPD8_1376 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPD8_1377 PF13593 SBF-like CPA transporter family (DUF4137) YPD8_1379 PF06097 Bacterial protein of unknown function (DUF945) YPD8_1380 PF01238 Phosphomannose isomerase type I YPD8_1381 PF10415 Fumarase C C-terminus YPD8_1381 PF00206 Lyase YPD8_1382 PF00206 Lyase YPD8_1382 PF10415 Fumarase C C-terminus YPD8_1383 PF05472 DNA replication terminus site-binding protein (Ter protein) YPD8_1384 PF07690 Major Facilitator Superfamily YPD8_1385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_1385 PF03466 LysR substrate binding domain YPD8_1386 PF00480 ROK family YPD8_1388 PF00654 Voltage gated chloride channel YPD8_1389 PF00356 Bacterial regulatory proteins, lacI family YPD8_1391 PF13407 Periplasmic binding protein domain YPD8_1392 PF09084 NMT1/THI5 like YPD8_1393 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_1394 PF01048 Phosphorylase superfamily YPD8_1394 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus YPD8_1399 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPD8_1399 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPD8_1399 PF00205 Thiamine pyrophosphate enzyme, central domain YPD8_1400 PF01842 ACT domain YPD8_1401 PF13419 Haloacid dehalogenase-like hydrolase YPD8_1404 PF00245 Alkaline phosphatase YPD8_1405 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPD8_1405 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPD8_1406 PF00027 Cyclic nucleotide-binding domain YPD8_1406 PF13545 Crp-like helix-turn-helix domain YPD8_1407 PF00582 Universal stress protein family YPD8_1408 PF02233 NAD(P) transhydrogenase beta subunit YPD8_1409 PF01262 Alanine dehydrogenase/PNT, C-terminal domain YPD8_1409 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch YPD8_1409 PF05222 Alanine dehydrogenase/PNT, N-terminal domain YPD8_1410 PF07338 Protein of unknown function (DUF1471) YPD8_1411 PF13520 Amino acid permease YPD8_1413 PF00486 Transcriptional regulatory protein, C terminal YPD8_1413 PF00072 Response regulator receiver domain YPD8_1414 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_1414 PF00672 HAMP domain YPD8_1414 PF00512 His Kinase A (phospho-acceptor) domain YPD8_1415 PF02074 Carboxypeptidase Taq (M32) metallopeptidase YPD8_1416 PF01797 Transposase IS200 like YPD8_1417 PF14431 YwqJ-like deaminase YPD8_1417 PF18807 Tripartite Tc toxins repeat YPD8_1418 PF04264 YceI-like domain YPD8_1419 PF01292 Prokaryotic cytochrome b561 YPD8_1420 PF00089 Trypsin YPD8_1423 PF04408 Helicase associated domain (HA2) YPD8_1423 PF11898 Domain of unknown function (DUF3418) YPD8_1423 PF00271 Helicase conserved C-terminal domain YPD8_1423 PF00270 DEAD/DEAH box helicase YPD8_1423 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold YPD8_1424 PF02525 Flavodoxin-like fold YPD8_1425 PF00325 Bacterial regulatory proteins, crp family YPD8_1425 PF04198 Putative sugar-binding domain YPD8_1426 PF08125 Mannitol dehydrogenase C-terminal domain YPD8_1426 PF01232 Mannitol dehydrogenase Rossmann domain YPD8_1427 PF07027 Protein of unknown function (DUF1318) YPD8_1428 PF11739 Dicarboxylate transport YPD8_1429 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPD8_1429 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPD8_1430 PF03724 META domain YPD8_1431 PF03891 Domain of unknown function (DUF333) YPD8_1432 PF02308 MgtC family YPD8_1433 PF00893 Small Multidrug Resistance protein YPD8_1434 PF10371 Domain of unknown function YPD8_1434 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II YPD8_1434 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase YPD8_1434 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg YPD8_1434 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPD8_1435 PF01171 PP-loop family YPD8_1436 PF07859 alpha/beta hydrolase fold YPD8_1436 PF13472 GDSL-like Lipase/Acylhydrolase family YPD8_1438 PF01544 CorA-like Mg2+ transporter protein YPD8_1439 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPD8_1440 PF00246 Zinc carboxypeptidase YPD8_1441 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPD8_1441 PF13378 Enolase C-terminal domain-like YPD8_1442 PF08534 Redoxin YPD8_1443 PF01695 IstB-like ATP binding protein YPD8_1444 PF00665 Integrase core domain YPD8_1444 PF02796 Helix-turn-helix domain of resolvase YPD8_1445 PF01797 Transposase IS200 like YPD8_1446 PF00158 Sigma-54 interaction domain YPD8_1446 PF18024 Helix-turn-helix domain YPD8_1449 PF05128 Domain of unknown function (DUF697) YPD8_1450 PF04317 YcjX-like family, DUF463 YPD8_1451 PF04024 PspC domain YPD8_1452 PF04012 PspA/IM30 family YPD8_1453 PF02954 Bacterial regulatory protein, Fis family YPD8_1453 PF00158 Sigma-54 interaction domain YPD8_1454 PF01797 Transposase IS200 like YPD8_1455 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPD8_1456 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_1457 PF12911 N-terminal TM domain of oligopeptide transport permease C YPD8_1457 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_1458 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPD8_1458 PF00005 ABC transporter YPD8_1459 PF00005 ABC transporter YPD8_1461 PF00854 POT family YPD8_1462 PF04893 Yip1 domain YPD8_1463 PF02798 Glutathione S-transferase, N-terminal domain YPD8_1463 PF00043 Glutathione S-transferase, C-terminal domain YPD8_1464 PF08543 Phosphomethylpyrimidine kinase YPD8_1465 PF01479 S4 domain YPD8_1465 PF00579 tRNA synthetases class I (W and Y) YPD8_1466 PF01243 Pyridoxamine 5'-phosphate oxidase YPD8_1466 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region YPD8_1467 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme YPD8_1468 PF03702 Anhydro-N-acetylmuramic acid kinase YPD8_1469 PF05433 Glycine zipper 2TM domain YPD8_1470 PF01047 MarR family YPD8_1471 PF00248 Aldo/keto reductase family YPD8_1472 PF00884 Sulfatase YPD8_1472 PF08019 Phosphoethanolamine transferase EptA/EptB YPD8_1473 PF00440 Bacterial regulatory proteins, tetR family YPD8_1473 PF16925 Tetracyclin repressor-like, C-terminal domain YPD8_1474 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPD8_1475 PF18807 Tripartite Tc toxins repeat YPD8_1475 PF14431 YwqJ-like deaminase YPD8_1476 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPD8_1477 PF00929 Exonuclease YPD8_1478 PF00462 Glutaredoxin YPD8_1479 PF00877 NlpC/P60 family YPD8_1480 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPD8_1480 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPD8_1483 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_1483 PF03466 LysR substrate binding domain YPD8_1484 PF07690 Major Facilitator Superfamily YPD8_1486 PF00677 Lumazine binding domain YPD8_1487 PF01554 MatE YPD8_1488 PF02887 Pyruvate kinase, alpha/beta domain YPD8_1488 PF00224 Pyruvate kinase, barrel domain YPD8_1489 PF01797 Transposase IS200 like YPD8_1490 PF00665 Integrase core domain YPD8_1490 PF02796 Helix-turn-helix domain of resolvase YPD8_1491 PF01695 IstB-like ATP binding protein YPD8_1492 PF17969 L,D-transpeptidase C-terminal domain YPD8_1492 PF01476 LysM domain YPD8_1492 PF03734 L,D-transpeptidase catalytic domain YPD8_1493 PF02657 Fe-S metabolism associated domain YPD8_1494 PF00266 Aminotransferase class-V YPD8_1495 PF01458 Uncharacterized protein family (UPF0051) YPD8_1496 PF00005 ABC transporter YPD8_1497 PF01458 Uncharacterized protein family (UPF0051) YPD8_1498 PF01521 Iron-sulphur cluster biosynthesis YPD8_1499 PF03061 Thioesterase superfamily YPD8_1500 PF01565 FAD binding domain YPD8_1500 PF02913 FAD linked oxidases, C-terminal domain YPD8_1500 PF13183 4Fe-4S dicluster domain YPD8_1501 PF01594 AI-2E family transporter YPD8_1502 PF02896 PEP-utilising enzyme, TIM barrel domain YPD8_1502 PF00391 PEP-utilising enzyme, mobile domain YPD8_1502 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain YPD8_1503 PF03618 Kinase/pyrophosphorylase YPD8_1504 PF00793 DAHP synthetase I family YPD8_1505 PF02696 Uncharacterized ACR, YdiU/UPF0061 family YPD8_1506 PF02696 Uncharacterized ACR, YdiU/UPF0061 family YPD8_1507 PF03099 Biotin/lipoate A/B protein ligase family YPD8_1507 PF10437 Bacterial lipoate protein ligase C-terminus YPD8_1508 PF00877 NlpC/P60 family YPD8_1510 PF00892 EamA-like transporter family YPD8_1511 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase YPD8_1512 PF01522 Polysaccharide deacetylase YPD8_1513 PF01370 NAD dependent epimerase/dehydratase family YPD8_1513 PF00551 Formyl transferase YPD8_1513 PF02911 Formyl transferase, C-terminal domain YPD8_1514 PF00535 Glycosyl transferase family 2 YPD8_1515 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPD8_1516 PF00005 ABC transporter YPD8_1517 PF00255 Glutathione peroxidase YPD8_1518 PF01032 FecCD transport family YPD8_1520 PF01797 Transposase IS200 like YPD8_1521 PF03484 tRNA synthetase B5 domain YPD8_1521 PF01588 Putative tRNA binding domain YPD8_1521 PF03483 B3/4 domain YPD8_1521 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain YPD8_1521 PF03147 Ferredoxin-fold anticodon binding domain YPD8_1522 PF01409 tRNA synthetases class II core domain (F) YPD8_1522 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain YPD8_1523 PF00453 Ribosomal protein L20 YPD8_1524 PF05198 Translation initiation factor IF-3, N-terminal domain YPD8_1524 PF00707 Translation initiation factor IF-3, C-terminal domain YPD8_1525 PF03129 Anticodon binding domain YPD8_1525 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPD8_1525 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPD8_1525 PF02824 TGS domain YPD8_1526 PF01914 MarC family integral membrane protein YPD8_1527 PF01464 Transglycosylase SLT domain YPD8_1528 PF01297 Zinc-uptake complex component A periplasmic YPD8_1529 PF00005 ABC transporter YPD8_1530 PF00950 ABC 3 transport family YPD8_1531 PF00950 ABC 3 transport family YPD8_1533 PF14002 YniB-like protein YPD8_1534 PF13419 Haloacid dehalogenase-like hydrolase YPD8_1535 PF00872 Transposase, Mutator family YPD8_1536 PF01306 LacY proton/sugar symporter YPD8_1537 PF16875 Glycosyl hydrolase family 36 N-terminal domain YPD8_1537 PF16874 Glycosyl hydrolase family 36 C-terminal domain YPD8_1538 PF17837 4'-phosphopantetheinyl transferase N-terminal domain YPD8_1538 PF01648 4'-phosphopantetheinyl transferase superfamily YPD8_1539 PF03480 Bacterial extracellular solute-binding protein, family 7 YPD8_1541 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component YPD8_1542 PF00196 Bacterial regulatory proteins, luxR family YPD8_1542 PF00072 Response regulator receiver domain YPD8_1543 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) YPD8_1545 PF01522 Polysaccharide deacetylase YPD8_1547 PF01554 MatE YPD8_1548 PF00764 Arginosuccinate synthase YPD8_1549 PF01070 FMN-dependent dehydrogenase YPD8_1550 PF13378 Enolase C-terminal domain-like YPD8_1550 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPD8_1551 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPD8_1553 PF04134 Protein of unknown function, DUF393 YPD8_1554 PF07690 Major Facilitator Superfamily YPD8_1555 PF09134 Invasin, domain 3 YPD8_1555 PF02369 Bacterial Ig-like domain (group 1) YPD8_1555 PF11924 Inverse autotransporter, beta-domain YPD8_1556 PF00872 Transposase, Mutator family YPD8_1557 PF04363 Protein of unknown function (DUF496) YPD8_1559 PF00929 Exonuclease YPD8_1559 PF08411 Exonuclease C-terminal YPD8_1560 PF13520 Amino acid permease YPD8_1561 PF00465 Iron-containing alcohol dehydrogenase YPD8_1562 PF00005 ABC transporter YPD8_1563 PF00005 ABC transporter YPD8_1564 PF02653 Branched-chain amino acid transport system / permease component YPD8_1566 PF01370 NAD dependent epimerase/dehydratase family YPD8_1567 PF08029 HisG, C-terminal domain YPD8_1567 PF01634 ATP phosphoribosyltransferase YPD8_1568 PF00815 Histidinol dehydrogenase YPD8_1569 PF00155 Aminotransferase class I and II YPD8_1570 PF00475 Imidazoleglycerol-phosphate dehydratase YPD8_1571 PF00117 Glutamine amidotransferase class-I YPD8_1572 PF00977 Histidine biosynthesis protein YPD8_1573 PF00977 Histidine biosynthesis protein YPD8_1574 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase YPD8_1574 PF01502 Phosphoribosyl-AMP cyclohydrolase YPD8_1575 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPD8_1575 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain YPD8_1576 PF00483 Nucleotidyl transferase YPD8_1577 PF00483 Nucleotidyl transferase YPD8_1578 PF06276 Ferric iron reductase FhuF-like transporter YPD8_1578 PF04183 IucA / IucC family YPD8_1579 PF07715 TonB-dependent Receptor Plug Domain YPD8_1579 PF00593 TonB dependent receptor YPD8_1579 PF07660 Secretin and TonB N terminus short domain YPD8_1580 PF00593 TonB dependent receptor YPD8_1580 PF07660 Secretin and TonB N terminus short domain YPD8_1580 PF07715 TonB-dependent Receptor Plug Domain YPD8_1581 PF01497 Periplasmic binding protein YPD8_1582 PF01032 FecCD transport family YPD8_1583 PF01032 FecCD transport family YPD8_1584 PF00005 ABC transporter YPD8_1585 PF04183 IucA / IucC family YPD8_1585 PF06276 Ferric iron reductase FhuF-like transporter YPD8_1587 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPD8_1588 PF00282 Pyridoxal-dependent decarboxylase conserved domain YPD8_1589 PF11575 FhuF 2Fe-2S C-terminal domain YPD8_1589 PF06276 Ferric iron reductase FhuF-like transporter YPD8_1590 PF03471 Transporter associated domain YPD8_1590 PF03741 Integral membrane protein TerC family YPD8_1590 PF00571 CBS domain YPD8_1591 PF05170 AsmA family YPD8_1592 PF00692 dUTPase YPD8_1593 PF00485 Phosphoribulokinase / Uridine kinase family YPD8_1594 PF10609 NUBPL iron-transfer P-loop NTPase YPD8_1595 PF09334 tRNA synthetases class I (M) YPD8_1595 PF01588 Putative tRNA binding domain YPD8_1596 PF01797 Transposase IS200 like YPD8_1600 PF07690 Major Facilitator Superfamily YPD8_1601 PF03788 LrgA family YPD8_1602 PF04172 LrgB-like family YPD8_1603 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region YPD8_1603 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPD8_1604 PF00390 Malic enzyme, N-terminal domain YPD8_1604 PF03949 Malic enzyme, NAD binding domain YPD8_1605 PF02698 DUF218 domain YPD8_1606 PF02653 Branched-chain amino acid transport system / permease component YPD8_1607 PF00005 ABC transporter YPD8_1608 PF13407 Periplasmic binding protein domain YPD8_1609 PF04235 Protein of unknown function (DUF418) YPD8_1610 PF01227 GTP cyclohydrolase I YPD8_1611 PF06779 Uncharacterised MFS-type transporter YbfB YPD8_1612 PF03466 LysR substrate binding domain YPD8_1612 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_1613 PF00107 Zinc-binding dehydrogenase YPD8_1613 PF08240 Alcohol dehydrogenase GroES-like domain YPD8_1614 PF00756 Putative esterase YPD8_1616 PF13533 Biotin-lipoyl like YPD8_1617 PF00005 ABC transporter YPD8_1619 PF03453 MoeA N-terminal region (domain I and II) YPD8_1619 PF00994 Probable molybdopterin binding domain YPD8_1619 PF03454 MoeA C-terminal region (domain IV) YPD8_1620 PF00899 ThiF family YPD8_1621 PF00872 Transposase, Mutator family YPD8_1622 PF03544 Gram-negative bacterial TonB protein C-terminal YPD8_1623 PF13505 Outer membrane protein beta-barrel domain YPD8_1624 PF13396 Phospholipase_D-nuclease N-terminal YPD8_1624 PF13091 PLD-like domain YPD8_1625 PF04269 Protein of unknown function, DUF440 YPD8_1626 PF00005 ABC transporter YPD8_1626 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPD8_1627 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPD8_1627 PF00005 ABC transporter YPD8_1628 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_1628 PF12911 N-terminal TM domain of oligopeptide transport permease C YPD8_1629 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_1630 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPD8_1631 PF01914 MarC family integral membrane protein YPD8_1632 PF00465 Iron-containing alcohol dehydrogenase YPD8_1632 PF00171 Aldehyde dehydrogenase family YPD8_1633 PF00665 Integrase core domain YPD8_1633 PF02796 Helix-turn-helix domain of resolvase YPD8_1634 PF01695 IstB-like ATP binding protein YPD8_1635 PF00265 Thymidine kinase YPD8_1636 PF00816 H-NS histone family YPD8_1637 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPD8_1637 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPD8_1637 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPD8_1638 PF00072 Response regulator receiver domain YPD8_1639 PF02810 SEC-C motif YPD8_1640 PF01842 ACT domain YPD8_1640 PF00551 Formyl transferase YPD8_1641 PF00872 Transposase, Mutator family YPD8_1642 PF03466 LysR substrate binding domain YPD8_1642 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_1643 PF03372 Endonuclease/Exonuclease/phosphatase family YPD8_1644 PF00293 NUDIX domain YPD8_1645 PF01131 DNA topoisomerase YPD8_1645 PF01751 Toprim domain YPD8_1646 PF02769 AIR synthase related protein, C-terminal domain YPD8_1646 PF00586 AIR synthase related protein, N-terminal domain YPD8_1647 PF00881 Nitroreductase family YPD8_1648 PF01343 Peptidase family S49 YPD8_1649 PF17763 Glutaminase/Asparaginase C-terminal domain YPD8_1649 PF00710 Asparaginase, N-terminal YPD8_1650 PF00857 Isochorismatase family YPD8_1651 PF01641 SelR domain YPD8_1652 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPD8_1652 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPD8_1653 PF01263 Aldose 1-epimerase YPD8_1654 PF06629 MltA-interacting protein MipA YPD8_1655 PF08298 PrkA AAA domain YPD8_1655 PF06798 PrkA serine protein kinase C-terminal domain YPD8_1656 PF04285 Protein of unknown function (DUF444) YPD8_1658 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_1658 PF03466 LysR substrate binding domain YPD8_1659 PF05726 Pirin C-terminal cupin domain YPD8_1659 PF02678 Pirin YPD8_1660 PF07690 Major Facilitator Superfamily YPD8_1661 PF01266 FAD dependent oxidoreductase YPD8_1662 PF04293 SpoVR like protein YPD8_1663 PF00392 Bacterial regulatory proteins, gntR family YPD8_1663 PF07840 FadR C-terminal domain YPD8_1664 PF06450 Bacterial Na+/H+ antiporter B (NhaB) YPD8_1665 PF02600 Disulfide bond formation protein DsbB YPD8_1668 PF00266 Aminotransferase class-V YPD8_1670 PF00872 Transposase, Mutator family YPD8_1671 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YPD8_1681 PF01797 Transposase IS200 like YPD8_1696 PF00872 Transposase, Mutator family YPD8_1697 PF00872 Transposase, Mutator family YPD8_1705 PF05772 NinB protein YPD8_1707 PF01695 IstB-like ATP binding protein YPD8_1708 PF02796 Helix-turn-helix domain of resolvase YPD8_1708 PF00665 Integrase core domain YPD8_1709 PF00589 Phage integrase family YPD8_1709 PF12167 Arm DNA-binding domain YPD8_1710 PF03692 Putative zinc- or iron-chelating domain YPD8_1711 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPD8_1712 PF13406 Transglycosylase SLT domain YPD8_1713 PF05209 Septum formation inhibitor MinC, N-terminal domain YPD8_1713 PF03775 Septum formation inhibitor MinC, C-terminal domain YPD8_1714 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain YPD8_1715 PF00570 HRDC domain YPD8_1715 PF01612 3'-5' exonuclease YPD8_1716 PF00501 AMP-binding enzyme YPD8_1716 PF13193 AMP-binding enzyme C-terminal domain YPD8_1717 PF03843 Outer membrane lipoprotein Slp family YPD8_1718 PF00814 Glycoprotease family YPD8_1719 PF04851 Type III restriction enzyme, res subunit YPD8_1719 PF13307 Helicase C-terminal domain YPD8_1720 PF01042 Endoribonuclease L-PSP YPD8_1721 PF00893 Small Multidrug Resistance protein YPD8_1722 PF00893 Small Multidrug Resistance protein YPD8_1723 PF01081 KDPG and KHG aldolase YPD8_1724 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain YPD8_1724 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain YPD8_1725 PF01380 SIS domain YPD8_1725 PF01418 Helix-turn-helix domain, rpiR family YPD8_1726 PF02887 Pyruvate kinase, alpha/beta domain YPD8_1726 PF00224 Pyruvate kinase, barrel domain YPD8_1727 PF03279 Bacterial lipid A biosynthesis acyltransferase YPD8_1728 PF01551 Peptidase family M23 YPD8_1728 PF01476 LysM domain YPD8_1728 PF08525 Opacity-associated protein A N-terminal motif YPD8_1729 PF01297 Zinc-uptake complex component A periplasmic YPD8_1730 PF00005 ABC transporter YPD8_1731 PF00950 ABC 3 transport family YPD8_1732 PF17864 RuvB AAA lid domain YPD8_1732 PF05491 RuvB C-terminal winged helix domain YPD8_1732 PF05496 Holliday junction DNA helicase RuvB P-loop domain YPD8_1733 PF07499 RuvA, C-terminal domain YPD8_1733 PF01330 RuvA N terminal domain YPD8_1734 PF02075 Crossover junction endodeoxyribonuclease RuvC YPD8_1735 PF01709 Transcriptional regulator YPD8_1736 PF00293 NUDIX domain YPD8_1737 PF02938 GAD domain YPD8_1737 PF01336 OB-fold nucleic acid binding domain YPD8_1737 PF00152 tRNA synthetases class II (D, K and N) YPD8_1738 PF01904 Protein of unknown function DUF72 YPD8_1739 PF01124 MAPEG family YPD8_1740 PF13649 Methyltransferase domain YPD8_1741 PF08003 Protein of unknown function (DUF1698) YPD8_1742 PF03932 CutC family YPD8_1743 PF06185 YecM protein YPD8_1744 PF05746 DALR anticodon binding domain YPD8_1744 PF00750 tRNA synthetases class I (R) YPD8_1744 PF03485 Arginyl tRNA synthetase N terminal domain YPD8_1745 PF13332 Hemagglutinin repeat YPD8_1745 PF05860 haemagglutination activity domain YPD8_1746 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPD8_1746 PF17287 POTRA domain YPD8_1746 PF08479 POTRA domain, ShlB-type YPD8_1747 PF03023 Lipid II flippase MurJ YPD8_1748 PF04337 Protein of unknown function, DUF480 YPD8_1749 PF13302 Acetyltransferase (GNAT) domain YPD8_1750 PF07690 Major Facilitator Superfamily YPD8_1751 PF07273 Protein of unknown function (DUF1439) YPD8_1752 PF02613 Nitrate reductase delta subunit YPD8_1753 PF02811 PHP domain YPD8_1754 PF01325 Iron dependent repressor, N-terminal DNA binding domain YPD8_1754 PF00480 ROK family YPD8_1755 PF03009 Glycerophosphoryl diester phosphodiesterase family YPD8_1756 PF00005 ABC transporter YPD8_1756 PF08402 TOBE domain YPD8_1757 PF01797 Transposase IS200 like YPD8_1758 PF00005 ABC transporter YPD8_1758 PF08402 TOBE domain YPD8_1759 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_1760 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_1762 PF03009 Glycerophosphoryl diester phosphodiesterase family YPD8_1763 PF01740 STAS domain YPD8_1763 PF00916 Sulfate permease family YPD8_1764 PF00793 DAHP synthetase I family YPD8_1765 PF13369 Transglutaminase-like superfamily YPD8_1766 PF04247 Invasion gene expression up-regulator, SirB YPD8_1767 PF13847 Methyltransferase domain YPD8_1767 PF17827 PrmC N-terminal domain YPD8_1768 PF03462 PCRF domain YPD8_1768 PF00472 RF-1 domain YPD8_1769 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain YPD8_1769 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain YPD8_1769 PF01488 Shikimate / quinate 5-dehydrogenase YPD8_1770 PF03550 Outer membrane lipoprotein LolB YPD8_1771 PF00288 GHMP kinases N terminal domain YPD8_1771 PF08544 GHMP kinases C terminal YPD8_1772 PF14572 Phosphoribosyl synthetase-associated domain YPD8_1772 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase YPD8_1773 PF01195 Peptidyl-tRNA hydrolase YPD8_1774 PF06071 Protein of unknown function (DUF933) YPD8_1774 PF01926 50S ribosome-binding GTPase YPD8_1782 PF02129 X-Pro dipeptidyl-peptidase (S15 family) YPD8_1783 PF00486 Transcriptional regulatory protein, C terminal YPD8_1783 PF00072 Response regulator receiver domain YPD8_1784 PF00672 HAMP domain YPD8_1784 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_1784 PF00512 His Kinase A (phospho-acceptor) domain YPD8_1792 PF08242 Methyltransferase domain YPD8_1796 PF00872 Transposase, Mutator family YPD8_1805 PF01370 NAD dependent epimerase/dehydratase family YPD8_1806 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPD8_1806 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPD8_1807 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPD8_1807 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPD8_1809 PF05962 HutD YPD8_1810 PF01979 Amidohydrolase family YPD8_1811 PF07702 UTRA domain YPD8_1811 PF00392 Bacterial regulatory proteins, gntR family YPD8_1812 PF01979 Amidohydrolase family YPD8_1814 PF01695 IstB-like ATP binding protein YPD8_1815 PF02796 Helix-turn-helix domain of resolvase YPD8_1815 PF00665 Integrase core domain YPD8_1816 PF00267 Gram-negative porin YPD8_1817 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family YPD8_1818 PF04996 Succinylarginine dihydrolase YPD8_1819 PF00171 Aldehyde dehydrogenase family YPD8_1820 PF04958 Arginine N-succinyltransferase beta subunit YPD8_1821 PF00202 Aminotransferase class-III YPD8_1822 PF00155 Aminotransferase class I and II YPD8_1822 PF00392 Bacterial regulatory proteins, gntR family YPD8_1823 PF07730 Histidine kinase YPD8_1823 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_1823 PF00672 HAMP domain YPD8_1823 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term YPD8_1824 PF01699 Sodium/calcium exchanger protein YPD8_1825 PF02562 PhoH-like protein YPD8_1827 PF13994 PgaD-like protein YPD8_1828 PF00535 Glycosyl transferase family 2 YPD8_1829 PF14883 Hypothetical glycosyl hydrolase family 13 YPD8_1829 PF01522 Polysaccharide deacetylase YPD8_1831 PF00557 Metallopeptidase family M24 YPD8_1832 PF09313 Domain of unknown function (DUF1971) YPD8_1832 PF03848 Tellurite resistance protein TehB YPD8_1834 PF00578 AhpC/TSA family YPD8_1835 PF12704 MacB-like periplasmic core domain YPD8_1835 PF00005 ABC transporter YPD8_1835 PF02687 FtsX-like permease family YPD8_1837 PF02687 FtsX-like permease family YPD8_1837 PF12704 MacB-like periplasmic core domain YPD8_1837 PF00005 ABC transporter YPD8_1839 PF10634 Fe2+ transport protein YPD8_1840 PF03239 Iron permease FTR1 family YPD8_1842 PF04960 Glutaminase YPD8_1843 PF00455 DeoR C terminal sensor domain YPD8_1843 PF08220 DeoR-like helix-turn-helix domain YPD8_1844 PF00324 Amino acid permease YPD8_1845 PF00155 Aminotransferase class I and II YPD8_1846 PF02508 Rnf-Nqr subunit, membrane protein YPD8_1848 PF04909 Amidohydrolase YPD8_1852 PF03466 LysR substrate binding domain YPD8_1852 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_1853 PF03328 HpcH/HpaI aldolase/citrate lyase family YPD8_1854 PF01575 MaoC like domain YPD8_1855 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain YPD8_1855 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain YPD8_1856 PF00196 Bacterial regulatory proteins, luxR family YPD8_1856 PF00072 Response regulator receiver domain YPD8_1857 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_1857 PF00072 Response regulator receiver domain YPD8_1857 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD8_1857 PF00512 His Kinase A (phospho-acceptor) domain YPD8_1857 PF00989 PAS fold YPD8_1857 PF01627 Hpt domain YPD8_1859 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD8_1859 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD8_1860 PF13953 PapC C-terminal domain YPD8_1860 PF13954 PapC N-terminal domain YPD8_1860 PF00577 Outer membrane usher protein YPD8_1862 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD8_1862 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD8_1863 PF13356 Arm DNA-binding domain YPD8_1863 PF00589 Phage integrase family YPD8_1864 PF00425 chorismate binding enzyme YPD8_1865 PF07690 Major Facilitator Superfamily YPD8_1866 PF00005 ABC transporter YPD8_1866 PF00664 ABC transporter transmembrane region YPD8_1868 PF08021 Siderophore-interacting FAD-binding domain YPD8_1868 PF00005 ABC transporter YPD8_1868 PF00664 ABC transporter transmembrane region YPD8_1868 PF04954 Siderophore-interacting protein YPD8_1870 PF00550 Phosphopantetheine attachment site YPD8_1870 PF00668 Condensation domain YPD8_1870 PF08242 Methyltransferase domain YPD8_1870 PF00501 AMP-binding enzyme YPD8_1874 PF00975 Thioesterase domain YPD8_1875 PF00501 AMP-binding enzyme YPD8_1875 PF13193 AMP-binding enzyme C-terminal domain YPD8_1876 PF00593 TonB dependent receptor YPD8_1876 PF07715 TonB-dependent Receptor Plug Domain YPD8_1879 PF01695 IstB-like ATP binding protein YPD8_1880 PF02796 Helix-turn-helix domain of resolvase YPD8_1880 PF00665 Integrase core domain YPD8_1881 PF08402 TOBE domain YPD8_1881 PF00005 ABC transporter YPD8_1882 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_1883 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_1885 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPD8_1885 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPD8_1889 PF00872 Transposase, Mutator family YPD8_1890 PF00872 Transposase, Mutator family YPD8_1895 PF01797 Transposase IS200 like YPD8_1896 PF01066 CDP-alcohol phosphatidyltransferase YPD8_1897 PF02151 UvrB/uvrC motif YPD8_1897 PF08459 UvrC Helix-hairpin-helix N-terminal YPD8_1897 PF01541 GIY-YIG catalytic domain YPD8_1898 PF02151 UvrB/uvrC motif YPD8_1898 PF08459 UvrC Helix-hairpin-helix N-terminal YPD8_1898 PF01541 GIY-YIG catalytic domain YPD8_1899 PF00072 Response regulator receiver domain YPD8_1899 PF00196 Bacterial regulatory proteins, luxR family YPD8_1900 PF06942 GlpM protein YPD8_1901 PF13505 Outer membrane protein beta-barrel domain YPD8_1902 PF00324 Amino acid permease YPD8_1903 PF01344 Kelch motif YPD8_1904 PF03358 NADPH-dependent FMN reductase YPD8_1905 PF04261 Dyp-type peroxidase family YPD8_1906 PF13473 Cupredoxin-like domain YPD8_1906 PF09375 Imelysin YPD8_1907 PF03239 Iron permease FTR1 family YPD8_1908 PF00474 Sodium:solute symporter family YPD8_1909 PF00171 Aldehyde dehydrogenase family YPD8_1909 PF01619 Proline dehydrogenase YPD8_1909 PF18327 Proline utilization A proline dehydrogenase N-terminal domain YPD8_1909 PF14850 DNA-binding domain of Proline dehydrogenase YPD8_1910 PF18327 Proline utilization A proline dehydrogenase N-terminal domain YPD8_1910 PF14850 DNA-binding domain of Proline dehydrogenase YPD8_1910 PF00171 Aldehyde dehydrogenase family YPD8_1910 PF01619 Proline dehydrogenase YPD8_1911 PF00171 Aldehyde dehydrogenase family YPD8_1911 PF01619 Proline dehydrogenase YPD8_1911 PF18327 Proline utilization A proline dehydrogenase N-terminal domain YPD8_1911 PF14850 DNA-binding domain of Proline dehydrogenase YPD8_1912 PF00171 Aldehyde dehydrogenase family YPD8_1912 PF14850 DNA-binding domain of Proline dehydrogenase YPD8_1912 PF01619 Proline dehydrogenase YPD8_1912 PF18327 Proline utilization A proline dehydrogenase N-terminal domain YPD8_1917 PF00291 Pyridoxal-phosphate dependent enzyme YPD8_1918 PF02899 Phage integrase, N-terminal SAM-like domain YPD8_1919 PF04542 Sigma-70 region 2 YPD8_1919 PF04539 Sigma-70 region 3 YPD8_1919 PF04545 Sigma-70, region 4 YPD8_1920 PF00669 Bacterial flagellin N-terminal helical region YPD8_1920 PF00700 Bacterial flagellin C-terminal helical region YPD8_1920 PF08884 Flagellin D3 domain YPD8_1921 PF07195 Flagellar hook-associated protein 2 C-terminus YPD8_1921 PF02465 Flagellar hook-associated protein 2 N-terminus YPD8_1921 PF07196 Flagellin hook IN motif YPD8_1922 PF02561 Flagellar protein FliS YPD8_1923 PF05400 Flagellar protein FliT YPD8_1924 PF12833 Helix-turn-helix domain YPD8_1925 PF00211 Adenylate and Guanylate cyclase catalytic domain YPD8_1925 PF02743 Cache domain YPD8_1925 PF00672 HAMP domain YPD8_1926 PF01966 HD domain YPD8_1927 PF00730 HhH-GPD superfamily base excision DNA repair protein YPD8_1928 PF02049 Flagellar hook-basal body complex protein FliE YPD8_1931 PF01706 FliG C-terminal domain YPD8_1931 PF14841 FliG middle domain YPD8_1931 PF14842 FliG N-terminal domain YPD8_1932 PF02108 Flagellar assembly protein FliH YPD8_1933 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPD8_1933 PF18269 T3SS EscN ATPase C-terminal domain YPD8_1934 PF02050 Flagellar FliJ protein YPD8_1936 PF02120 Flagellar hook-length control protein FliK YPD8_1937 PF03748 Flagellar basal body-associated protein FliL YPD8_1938 PF02154 Flagellar motor switch protein FliM YPD8_1938 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPD8_1939 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPD8_1939 PF16973 Flagellar motor switch protein FliN N-terminal YPD8_1940 PF04347 Flagellar biosynthesis protein, FliO YPD8_1941 PF00813 FliP family YPD8_1942 PF01311 Bacterial export proteins, family 1 YPD8_1944 PF00294 pfkB family carbohydrate kinase YPD8_1945 PF02653 Branched-chain amino acid transport system / permease component YPD8_1946 PF00005 ABC transporter YPD8_1947 PF13407 Periplasmic binding protein domain YPD8_1948 PF02653 Branched-chain amino acid transport system / permease component YPD8_1949 PF00596 Class II Aldolase and Adducin N-terminal domain YPD8_1950 PF04198 Putative sugar-binding domain YPD8_1951 PF00669 Bacterial flagellin N-terminal helical region YPD8_1952 PF00460 Flagella basal body rod protein YPD8_1952 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD8_1953 PF10135 Rod binding protein YPD8_1953 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase YPD8_1954 PF02119 Flagellar P-ring protein YPD8_1955 PF02107 Flagellar L-ring protein YPD8_1956 PF00460 Flagella basal body rod protein YPD8_1956 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD8_1957 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD8_1957 PF00460 Flagella basal body rod protein YPD8_1958 PF00460 Flagella basal body rod protein YPD8_1958 PF07559 Flagellar basal body protein FlaE YPD8_1958 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD8_1959 PF03963 Flagellar hook capping protein - N-terminal region YPD8_1959 PF13861 FlgD Tudor-like domain YPD8_1959 PF13860 FlgD Ig-like domain YPD8_1960 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD8_1960 PF00460 Flagella basal body rod protein YPD8_1961 PF00460 Flagella basal body rod protein YPD8_1962 PF17656 FlgA N-terminal domain YPD8_1962 PF13144 Chaperone for flagella basal body P-ring formation YPD8_1963 PF04316 Anti-sigma-28 factor, FlgM YPD8_1964 PF05130 FlgN protein YPD8_1965 PF09134 Invasin, domain 3 YPD8_1965 PF07979 Intimin C-type lectin domain YPD8_1965 PF02369 Bacterial Ig-like domain (group 1) YPD8_1965 PF11924 Inverse autotransporter, beta-domain YPD8_1966 PF01797 Transposase IS200 like YPD8_1967 PF06366 Flagellar protein FlhE YPD8_1968 PF00771 FHIPEP family YPD8_1969 PF01312 FlhB HrpN YscU SpaS Family YPD8_1972 PF10709 Protein of unknown function (DUF2511) YPD8_1974 PF04234 CopC domain YPD8_1975 PF00210 Ferritin-like domain YPD8_1976 PF00561 alpha/beta hydrolase fold YPD8_1977 PF00326 Prolyl oligopeptidase family YPD8_1977 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain YPD8_1978 PF13995 YebF-like protein YPD8_1980 PF07130 YebG protein YPD8_1981 PF00270 DEAD/DEAH box helicase YPD8_1981 PF03880 DbpA RNA binding domain YPD8_1981 PF00271 Helicase conserved C-terminal domain YPD8_1982 PF02222 ATP-grasp domain YPD8_1983 PF04715 Anthranilate synthase component I, N terminal region YPD8_1983 PF00425 chorismate binding enzyme YPD8_1984 PF00293 NUDIX domain YPD8_1985 PF03313 Serine dehydratase alpha chain YPD8_1985 PF03315 Serine dehydratase beta chain YPD8_1986 PF01613 Flavin reductase like domain YPD8_1987 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal YPD8_1987 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal YPD8_1988 PF07690 Major Facilitator Superfamily YPD8_1989 PF03328 HpcH/HpaI aldolase/citrate lyase family YPD8_1990 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPD8_1991 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase YPD8_1992 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPD8_1993 PF00171 Aldehyde dehydrogenase family YPD8_1994 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPD8_1995 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPD8_1996 PF01047 MarR family YPD8_1997 PF03741 Integral membrane protein TerC family YPD8_1997 PF03471 Transporter associated domain YPD8_1998 PF03610 PTS system fructose IIA component YPD8_1998 PF03830 PTS system sorbose subfamily IIB component YPD8_1999 PF03609 PTS system sorbose-specific iic component YPD8_2000 PF03613 PTS system mannose/fructose/sorbose family IID component YPD8_2001 PF06173 Protein of unknown function (DUF986) YPD8_2002 PF02659 Putative manganese efflux pump YPD8_2003 PF07715 TonB-dependent Receptor Plug Domain YPD8_2003 PF00593 TonB dependent receptor YPD8_2004 PF08448 PAS fold YPD8_2004 PF05231 MASE1 YPD8_2004 PF00990 Diguanylate cyclase, GGDEF domain YPD8_2004 PF13426 PAS domain YPD8_2004 PF00563 EAL domain YPD8_2004 PF08447 PAS fold YPD8_2005 PF13847 Methyltransferase domain YPD8_2007 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP YPD8_2008 PF00324 Amino acid permease YPD8_2009 PF12833 Helix-turn-helix domain YPD8_2010 PF00005 ABC transporter YPD8_2010 PF00664 ABC transporter transmembrane region YPD8_2012 PF06167 Glucose-regulated metallo-peptidase M90 YPD8_2013 PF01695 IstB-like ATP binding protein YPD8_2014 PF02796 Helix-turn-helix domain of resolvase YPD8_2014 PF00665 Integrase core domain YPD8_2015 PF00356 Bacterial regulatory proteins, lacI family YPD8_2015 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPD8_2016 PF00872 Transposase, Mutator family YPD8_2017 PF04962 KduI/IolB family YPD8_2019 PF06917 Periplasmic pectate lyase YPD8_2020 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_2021 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_2022 PF03459 TOBE domain YPD8_2022 PF00005 ABC transporter YPD8_2022 PF17912 MalK OB fold domain YPD8_2023 PF01547 Bacterial extracellular solute-binding protein YPD8_2024 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPD8_2025 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPD8_2027 PF01510 N-acetylmuramoyl-L-alanine amidase YPD8_2028 PF01614 Bacterial transcriptional regulator YPD8_2028 PF09339 IclR helix-turn-helix domain YPD8_2029 PF14583 Oligogalacturonate lyase YPD8_2030 PF07690 Major Facilitator Superfamily YPD8_2031 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD8_2031 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD8_2033 PF13954 PapC N-terminal domain YPD8_2033 PF13953 PapC C-terminal domain YPD8_2033 PF00577 Outer membrane usher protein YPD8_2034 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD8_2034 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD8_2035 PF00419 Fimbrial protein YPD8_2036 PF01435 Peptidase family M48 YPD8_2037 PF03572 Peptidase family S41 YPD8_2037 PF17804 Tail specific protease N-terminal domain YPD8_2037 PF11818 C-terminal domain of tail specific protease (DUF3340) YPD8_2037 PF00595 PDZ domain YPD8_2038 PF17516 ProQ C-terminal domain YPD8_2038 PF04352 ProQ/FINO family YPD8_2039 PF13185 GAF domain YPD8_2040 PF04403 Paraquat-inducible protein A YPD8_2041 PF04403 Paraquat-inducible protein A YPD8_2042 PF02470 MlaD protein YPD8_2045 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD8_2045 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD8_2049 PF00665 Integrase core domain YPD8_2049 PF02796 Helix-turn-helix domain of resolvase YPD8_2050 PF01695 IstB-like ATP binding protein YPD8_2052 PF00842 Alanine racemase, C-terminal domain YPD8_2052 PF01168 Alanine racemase, N-terminal domain YPD8_2054 PF05658 Head domain of trimeric autotransporter adhesin YPD8_2054 PF03895 YadA-like membrane anchor domain YPD8_2054 PF05662 Coiled stalk of trimeric autotransporter adhesin YPD8_2054 PF13018 Extended Signal Peptide of Type V secretion system YPD8_2055 PF13018 Extended Signal Peptide of Type V secretion system YPD8_2055 PF03895 YadA-like membrane anchor domain YPD8_2055 PF05658 Head domain of trimeric autotransporter adhesin YPD8_2055 PF05662 Coiled stalk of trimeric autotransporter adhesin YPD8_2056 PF01510 N-acetylmuramoyl-L-alanine amidase YPD8_2057 PF04344 Chemotaxis phosphatase, CheZ YPD8_2058 PF00072 Response regulator receiver domain YPD8_2059 PF00072 Response regulator receiver domain YPD8_2059 PF01339 CheB methylesterase YPD8_2060 PF01739 CheR methyltransferase, SAM binding domain YPD8_2060 PF03705 CheR methyltransferase, all-alpha domain YPD8_2061 PF00672 HAMP domain YPD8_2061 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPD8_2061 PF02203 Tar ligand binding domain homologue YPD8_2062 PF00672 HAMP domain YPD8_2062 PF02203 Tar ligand binding domain homologue YPD8_2062 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPD8_2065 PF12951 Passenger-associated-transport-repeat YPD8_2066 PF08348 YheO-like PAS domain YPD8_2066 PF13309 HTH domain YPD8_2068 PF01042 Endoribonuclease L-PSP YPD8_2069 PF07690 Major Facilitator Superfamily YPD8_2070 PF01584 CheW-like domain YPD8_2071 PF01584 CheW-like domain YPD8_2071 PF02895 Signal transducing histidine kinase, homodimeric domain YPD8_2071 PF01627 Hpt domain YPD8_2071 PF09078 CheY binding YPD8_2071 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_2072 PF00691 OmpA family YPD8_2072 PF13677 Membrane MotB of proton-channel complex MotA/MotB YPD8_2073 PF01618 MotA/TolQ/ExbB proton channel family YPD8_2074 PF05280 Flagellar transcriptional activator (FlhC) YPD8_2075 PF00690 Cation transporter/ATPase, N-terminus YPD8_2075 PF00689 Cation transporting ATPase, C-terminus YPD8_2076 PF02308 MgtC family YPD8_2077 PF02203 Tar ligand binding domain homologue YPD8_2077 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPD8_2077 PF00672 HAMP domain YPD8_2078 PF02203 Tar ligand binding domain homologue YPD8_2078 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPD8_2078 PF00672 HAMP domain YPD8_2079 PF00703 Glycosyl hydrolases family 2 YPD8_2079 PF02929 Beta galactosidase small chain YPD8_2079 PF02836 Glycosyl hydrolases family 2, TIM barrel domain YPD8_2079 PF02837 Glycosyl hydrolases family 2, sugar binding domain YPD8_2079 PF16353 Domain of unknown function(DUF4981) YPD8_2080 PF02801 Beta-ketoacyl synthase, C-terminal domain YPD8_2080 PF00550 Phosphopantetheine attachment site YPD8_2080 PF00107 Zinc-binding dehydrogenase YPD8_2080 PF00698 Acyl transferase domain YPD8_2080 PF16197 Ketoacyl-synthetase C-terminal extension YPD8_2080 PF08240 Alcohol dehydrogenase GroES-like domain YPD8_2080 PF00109 Beta-ketoacyl synthase, N-terminal domain YPD8_2080 PF08659 KR domain YPD8_2080 PF14765 Polyketide synthase dehydratase YPD8_2081 PF10777 Inner membrane protein YlaC YPD8_2082 PF13404 AsnC-type helix-turn-helix domain YPD8_2082 PF01037 Lrp/AsnC ligand binding domain YPD8_2084 PF00328 Histidine phosphatase superfamily (branch 2) YPD8_2085 PF01638 HxlR-like helix-turn-helix YPD8_2086 PF05368 NmrA-like family YPD8_2087 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPD8_2087 PF08447 PAS fold YPD8_2088 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPD8_2088 PF00356 Bacterial regulatory proteins, lacI family YPD8_2089 PF00180 Isocitrate/isopropylmalate dehydrogenase YPD8_2090 PF00849 RNA pseudouridylate synthase YPD8_2091 PF00293 NUDIX domain YPD8_2093 PF04356 Protein of unknown function (DUF489) YPD8_2094 PF08328 Adenylosuccinate lyase C-terminal YPD8_2094 PF00206 Lyase YPD8_2095 PF00206 Lyase YPD8_2095 PF08328 Adenylosuccinate lyase C-terminal YPD8_2097 PF00072 Response regulator receiver domain YPD8_2097 PF00486 Transcriptional regulatory protein, C terminal YPD8_2098 PF08918 PhoQ Sensor YPD8_2098 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_2099 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_2099 PF08918 PhoQ Sensor YPD8_2100 PF08007 Cupin superfamily protein YPD8_2101 PF07687 Peptidase dimerisation domain YPD8_2101 PF01546 Peptidase family M20/M25/M40 YPD8_2102 PF02146 Sir2 family YPD8_2103 PF00480 ROK family YPD8_2104 PF02687 FtsX-like permease family YPD8_2104 PF12704 MacB-like periplasmic core domain YPD8_2105 PF00005 ABC transporter YPD8_2106 PF02687 FtsX-like permease family YPD8_2106 PF12704 MacB-like periplasmic core domain YPD8_2109 PF05433 Glycine zipper 2TM domain YPD8_2110 PF00872 Transposase, Mutator family YPD8_2113 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD8_2114 PF05728 Uncharacterised protein family (UPF0227) YPD8_2115 PF00933 Glycosyl hydrolase family 3 N terminal domain YPD8_2116 PF01636 Phosphotransferase enzyme family YPD8_2117 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPD8_2117 PF13036 Peptidoglycan-synthase activator LpoB YPD8_2118 PF07233 Protein of unknown function (DUF1425) YPD8_2119 PF01230 HIT domain YPD8_2120 PF08501 Shikimate dehydrogenase substrate binding domain YPD8_2121 PF01797 Transposase IS200 like YPD8_2122 PF00367 phosphotransferase system, EIIB YPD8_2122 PF02378 Phosphotransferase system, EIIC YPD8_2123 PF01026 TatD related DNase YPD8_2124 PF09115 DNA polymerase III, delta subunit, C terminal YPD8_2125 PF02223 Thymidylate kinase YPD8_2126 PF02618 YceG-like family YPD8_2127 PF01063 Amino-transferase class IV YPD8_2128 PF01797 Transposase IS200 like YPD8_2129 PF02801 Beta-ketoacyl synthase, C-terminal domain YPD8_2129 PF00109 Beta-ketoacyl synthase, N-terminal domain YPD8_2131 PF00698 Acyl transferase domain YPD8_2132 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPD8_2132 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPD8_2133 PF02504 Fatty acid synthesis protein YPD8_2134 PF02620 Large ribosomal RNA subunit accumulation protein YceD YPD8_2135 PF02545 Maf-like protein YPD8_2136 PF01797 Transposase IS200 like YPD8_2137 PF01479 S4 domain YPD8_2137 PF00849 RNA pseudouridylate synthase YPD8_2138 PF00575 S1 RNA binding domain YPD8_2138 PF10150 Ribonuclease E/G family YPD8_2138 PF12111 Polyribonucleotide phosphorylase C terminal YPD8_2139 PF00872 Transposase, Mutator family YPD8_2140 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPD8_2141 PF00356 Bacterial regulatory proteins, lacI family YPD8_2141 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPD8_2142 PF01515 Phosphate acetyl/butaryl transferase YPD8_2142 PF07085 DRTGG domain YPD8_2143 PF00871 Acetokinase family YPD8_2144 PF04217 Protein of unknown function, DUF412 YPD8_2145 PF03887 YfbU domain YPD8_2146 PF13419 Haloacid dehalogenase-like hydrolase YPD8_2147 PF03600 Citrate transporter YPD8_2147 PF02080 TrkA-C domain YPD8_2149 PF00155 Aminotransferase class I and II YPD8_2150 PF03466 LysR substrate binding domain YPD8_2150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_2151 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YPD8_2152 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit YPD8_2153 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit YPD8_2153 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit YPD8_2155 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPD8_2155 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YPD8_2155 PF10531 SLBB domain YPD8_2156 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPD8_2156 PF00384 Molybdopterin oxidoreductase YPD8_2156 PF01568 Molydopterin dinucleotide binding domain YPD8_2156 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YPD8_2157 PF00146 NADH dehydrogenase YPD8_2158 PF12838 4Fe-4S dicluster domain YPD8_2159 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YPD8_2160 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YPD8_2161 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YPD8_2161 PF00361 Proton-conducting membrane transporter YPD8_2162 PF00361 Proton-conducting membrane transporter YPD8_2163 PF00361 Proton-conducting membrane transporter YPD8_2165 PF04074 YhcH/YjgK/YiaL YPD8_2166 PF01202 Shikimate kinase YPD8_2167 PF00106 short chain dehydrogenase YPD8_2169 PF00356 Bacterial regulatory proteins, lacI family YPD8_2170 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPD8_2170 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPD8_2171 PF07690 Major Facilitator Superfamily YPD8_2172 PF03928 Haem-degrading YPD8_2173 PF00920 Dehydratase family YPD8_2174 PF00920 Dehydratase family YPD8_2176 PF00425 chorismate binding enzyme YPD8_2177 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPD8_2177 PF16582 Middle domain of thiamine pyrophosphate YPD8_2177 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPD8_2178 PF12697 Alpha/beta hydrolase family YPD8_2179 PF00378 Enoyl-CoA hydratase/isomerase YPD8_2180 PF13378 Enolase C-terminal domain-like YPD8_2181 PF00501 AMP-binding enzyme YPD8_2181 PF13193 AMP-binding enzyme C-terminal domain YPD8_2182 PF02885 Glycosyl transferase family, helical bundle domain YPD8_2183 PF05971 RNA methyltransferase YPD8_2184 PF01695 IstB-like ATP binding protein YPD8_2185 PF02796 Helix-turn-helix domain of resolvase YPD8_2185 PF00665 Integrase core domain YPD8_2186 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPD8_2186 PF08447 PAS fold YPD8_2186 PF13426 PAS domain YPD8_2187 PF00005 ABC transporter YPD8_2188 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_2189 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD8_2191 PF00210 Ferritin-like domain YPD8_2192 PF13649 Methyltransferase domain YPD8_2194 PF00892 EamA-like transporter family YPD8_2195 PF13505 Outer membrane protein beta-barrel domain YPD8_2199 PF00107 Zinc-binding dehydrogenase YPD8_2199 PF08240 Alcohol dehydrogenase GroES-like domain YPD8_2200 PF13407 Periplasmic binding protein domain YPD8_2202 PF00005 ABC transporter YPD8_2203 PF02653 Branched-chain amino acid transport system / permease component YPD8_2204 PF00356 Bacterial regulatory proteins, lacI family YPD8_2205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_2205 PF03466 LysR substrate binding domain YPD8_2206 PF00180 Isocitrate/isopropylmalate dehydrogenase YPD8_2207 PF02028 BCCT, betaine/carnitine/choline family transporter YPD8_2208 PF00848 Ring hydroxylating alpha subunit (catalytic domain) YPD8_2208 PF00355 Rieske [2Fe-2S] domain YPD8_2209 PF00111 2Fe-2S iron-sulfur cluster binding domain YPD8_2209 PF00175 Oxidoreductase NAD-binding domain YPD8_2209 PF00970 Oxidoreductase FAD-binding domain YPD8_2210 PF17287 POTRA domain YPD8_2210 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPD8_2210 PF08479 POTRA domain, ShlB-type YPD8_2214 PF13018 Extended Signal Peptide of Type V secretion system YPD8_2214 PF04829 Pre-toxin domain with VENN motif YPD8_2214 PF05860 haemagglutination activity domain YPD8_2214 PF13332 Hemagglutinin repeat YPD8_2215 PF13332 Hemagglutinin repeat YPD8_2215 PF04829 Pre-toxin domain with VENN motif YPD8_2215 PF15526 Novel toxin 21 YPD8_2215 PF05860 haemagglutination activity domain YPD8_2215 PF05594 Haemagluttinin repeat YPD8_2217 PF00005 ABC transporter YPD8_2217 PF17912 MalK OB fold domain YPD8_2218 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPD8_2218 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPD8_2218 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPD8_2218 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPD8_2219 PF00356 Bacterial regulatory proteins, lacI family YPD8_2221 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_2222 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_2223 PF04041 beta-1,4-mannooligosaccharide phosphorylase YPD8_2227 PF00924 Mechanosensitive ion channel YPD8_2228 PF01867 CRISPR associated protein Cas1 YPD8_2231 PF09611 CRISPR-associated protein (Cas_Csy1) YPD8_2232 PF09614 CRISPR-associated protein (Cas_Csy2) YPD8_2233 PF09615 CRISPR-associated protein (Cas_Csy3) YPD8_2234 PF09618 CRISPR-associated protein (Cas_Csy4) YPD8_2235 PF00248 Aldo/keto reductase family YPD8_2237 PF00083 Sugar (and other) transporter YPD8_2238 PF03466 LysR substrate binding domain YPD8_2238 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_2239 PF00196 Bacterial regulatory proteins, luxR family YPD8_2239 PF03472 Autoinducer binding domain YPD8_2240 PF00765 Autoinducer synthase YPD8_2243 PF01594 AI-2E family transporter YPD8_2244 PF00196 Bacterial regulatory proteins, luxR family YPD8_2245 PF01266 FAD dependent oxidoreductase YPD8_2246 PF00872 Transposase, Mutator family YPD8_2247 PF01979 Amidohydrolase family YPD8_2248 PF00872 Transposase, Mutator family YPD8_2249 PF00905 Penicillin binding protein transpeptidase domain YPD8_2249 PF00912 Transglycosylase YPD8_2249 PF06832 Penicillin-Binding Protein C-terminus Family YPD8_2250 PF17962 Bacterial macroglobulin domain 6 YPD8_2250 PF07703 Alpha-2-macroglobulin bait region domain YPD8_2250 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain YPD8_2250 PF11974 Bacterial alpha-2-macroglobulin MG3 domain YPD8_2250 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain YPD8_2250 PF01835 MG2 domain YPD8_2250 PF00207 Alpha-2-macroglobulin family YPD8_2253 PF00171 Aldehyde dehydrogenase family YPD8_2254 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPD8_2254 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPD8_2254 PF00205 Thiamine pyrophosphate enzyme, central domain YPD8_2255 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPD8_2255 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPD8_2256 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPD8_2256 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPD8_2257 PF13407 Periplasmic binding protein domain YPD8_2258 PF00005 ABC transporter YPD8_2259 PF02653 Branched-chain amino acid transport system / permease component YPD8_2260 PF02653 Branched-chain amino acid transport system / permease component YPD8_2261 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPD8_2261 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPD8_2262 PF00294 pfkB family carbohydrate kinase YPD8_2263 PF01261 Xylose isomerase-like TIM barrel YPD8_2264 PF04962 KduI/IolB family YPD8_2266 PF00005 ABC transporter YPD8_2266 PF00664 ABC transporter transmembrane region YPD8_2269 PF00313 'Cold-shock' DNA-binding domain YPD8_2270 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPD8_2271 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family YPD8_2271 PF04055 Radical SAM superfamily YPD8_2272 PF03099 Biotin/lipoate A/B protein ligase family YPD8_2273 PF07943 Penicillin-binding protein 5, C-terminal domain YPD8_2273 PF00768 D-alanyl-D-alanine carboxypeptidase YPD8_2274 PF03330 Lytic transglycolase YPD8_2274 PF05036 Sporulation related domain YPD8_2275 PF01098 Cell cycle protein YPD8_2276 PF00905 Penicillin binding protein transpeptidase domain YPD8_2276 PF03717 Penicillin-binding Protein dimerisation domain YPD8_2277 PF02590 Predicted SPOUT methyltransferase YPD8_2279 PF01467 Cytidylyltransferase-like YPD8_2280 PF06144 DNA polymerase III, delta subunit YPD8_2280 PF14840 Processivity clamp loader gamma complex DNA pol III C-term YPD8_2281 PF04390 Lipopolysaccharide-assembly YPD8_2282 PF00133 tRNA synthetases class I (I, L, M and V) YPD8_2282 PF13603 Leucyl-tRNA synthetase, Domain 2 YPD8_2282 PF08264 Anticodon-binding domain of tRNA YPD8_2283 PF07295 Zinc-ribbon containing domain YPD8_2284 PF00005 ABC transporter YPD8_2285 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_2286 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_2287 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD8_2288 PF00795 Carbon-nitrogen hydrolase YPD8_2289 PF00571 CBS domain YPD8_2289 PF03471 Transporter associated domain YPD8_2290 PF02130 Uncharacterized protein family UPF0054 YPD8_2291 PF02562 PhoH-like protein YPD8_2292 PF01938 TRAM domain YPD8_2292 PF04055 Radical SAM superfamily YPD8_2292 PF00919 Uncharacterized protein family UPF0004 YPD8_2293 PF01494 FAD binding domain YPD8_2294 PF00733 Asparagine synthase YPD8_2294 PF13537 Glutamine amidotransferase domain YPD8_2295 PF13344 Haloacid dehalogenase-like hydrolase YPD8_2296 PF01047 MarR family YPD8_2296 PF00480 ROK family YPD8_2297 PF01979 Amidohydrolase family YPD8_2298 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase YPD8_2299 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPD8_2299 PF02378 Phosphotransferase system, EIIC YPD8_2299 PF00367 phosphotransferase system, EIIB YPD8_2300 PF01797 Transposase IS200 like YPD8_2301 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPD8_2301 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain YPD8_2302 PF03573 outer membrane porin, OprD family YPD8_2303 PF03173 Putative carbohydrate binding domain YPD8_2303 PF02838 Glycosyl hydrolase family 20, domain 2 YPD8_2303 PF00728 Glycosyl hydrolase family 20, catalytic domain YPD8_2303 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain YPD8_2304 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain YPD8_2304 PF03173 Putative carbohydrate binding domain YPD8_2304 PF00728 Glycosyl hydrolase family 20, catalytic domain YPD8_2304 PF02838 Glycosyl hydrolase family 20, domain 2 YPD8_2305 PF01475 Ferric uptake regulator family YPD8_2306 PF00258 Flavodoxin YPD8_2307 PF12697 Alpha/beta hydrolase family YPD8_2308 PF13356 Arm DNA-binding domain YPD8_2308 PF00589 Phage integrase family YPD8_2309 PF01695 IstB-like ATP binding protein YPD8_2310 PF02796 Helix-turn-helix domain of resolvase YPD8_2310 PF00665 Integrase core domain YPD8_2312 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPD8_2313 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_2314 PF00571 CBS domain YPD8_2314 PF00005 ABC transporter YPD8_2315 PF00268 Ribonucleotide reductase, small chain YPD8_2316 PF02867 Ribonucleotide reductase, barrel domain YPD8_2316 PF08343 Ribonucleotide reductase N-terminal YPD8_2316 PF00317 Ribonucleotide reductase, all-alpha domain YPD8_2317 PF07972 NrdI Flavodoxin like YPD8_2318 PF06392 Acid shock protein repeat YPD8_2319 PF09400 Protein of unknown function (DUF2002) YPD8_2320 PF06711 Protein of unknown function (DUF1198) YPD8_2322 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPD8_2324 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_2325 PF12911 N-terminal TM domain of oligopeptide transport permease C YPD8_2325 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_2326 PF00005 ABC transporter YPD8_2327 PF00005 ABC transporter YPD8_2328 PF00547 Urease, gamma subunit YPD8_2329 PF00699 Urease beta subunit YPD8_2330 PF00449 Urease alpha-subunit, N-terminal domain YPD8_2330 PF01979 Amidohydrolase family YPD8_2331 PF02814 UreE urease accessory protein, N-terminal domain YPD8_2331 PF05194 UreE urease accessory protein, C-terminal domain YPD8_2332 PF01730 UreF YPD8_2333 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPD8_2334 PF01774 UreD urease accessory protein YPD8_2335 PF03253 Urea transporter YPD8_2336 PF03824 High-affinity nickel-transport protein YPD8_2337 PF06411 HdeA/HdeB family YPD8_2338 PF02254 TrkA-N domain YPD8_2338 PF07885 Ion channel YPD8_2339 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPD8_2340 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPD8_2341 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPD8_2342 PF02378 Phosphotransferase system, EIIC YPD8_2343 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit YPD8_2344 PF07883 Cupin domain YPD8_2344 PF12833 Helix-turn-helix domain YPD8_2345 PF04794 YdjC-like protein YPD8_2346 PF03925 SeqA protein C-terminal domain YPD8_2346 PF17206 SeqA protein N-terminal domain YPD8_2347 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPD8_2347 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPD8_2347 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPD8_2347 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPD8_2349 PF00486 Transcriptional regulatory protein, C terminal YPD8_2349 PF00072 Response regulator receiver domain YPD8_2350 PF00512 His Kinase A (phospho-acceptor) domain YPD8_2350 PF02702 Osmosensitive K+ channel His kinase sensor domain YPD8_2350 PF13493 Domain of unknown function (DUF4118) YPD8_2350 PF13492 GAF domain YPD8_2350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_2351 PF02669 K+-transporting ATPase, c chain YPD8_2353 PF03814 Potassium-transporting ATPase A subunit YPD8_2354 PF08349 Protein of unknown function (DUF1722) YPD8_2355 PF03441 FAD binding domain of DNA photolyase YPD8_2355 PF00875 DNA photolyase YPD8_2356 PF02112 cAMP phosphodiesterases class-II YPD8_2357 PF01784 NIF3 (NGG1p interacting factor 3) YPD8_2358 PF02682 Carboxyltransferase domain, subdomain C and D YPD8_2359 PF02626 Carboxyltransferase domain, subdomain A and B YPD8_2360 PF03746 LamB/YcsF family YPD8_2363 PF01470 Pyroglutamyl peptidase YPD8_2364 PF03167 Uracil DNA glycosylase superfamily YPD8_2365 PF01228 Glycine radical YPD8_2367 PF12796 Ankyrin repeats (3 copies) YPD8_2368 PF00271 Helicase conserved C-terminal domain YPD8_2368 PF00270 DEAD/DEAH box helicase YPD8_2369 PF05175 Methyltransferase small domain YPD8_2370 PF02910 Fumarate reductase flavoprotein C-term YPD8_2370 PF00890 FAD binding domain YPD8_2371 PF08281 Sigma-70, region 4 YPD8_2371 PF04542 Sigma-70 region 2 YPD8_2372 PF03872 Anti sigma-E protein RseA, N-terminal domain YPD8_2372 PF03873 Anti sigma-E protein RseA, C-terminal domain YPD8_2373 PF03888 MucB/RseB N-terminal domain YPD8_2373 PF17188 MucB/RseB C-terminal domain YPD8_2376 PF06421 GTP-binding protein LepA C-terminus YPD8_2376 PF00009 Elongation factor Tu GTP binding domain YPD8_2376 PF03144 Elongation factor Tu domain 2 YPD8_2376 PF00679 Elongation factor G C-terminus YPD8_2377 PF10502 Signal peptidase, peptidase S26 YPD8_2378 PF14622 Ribonuclease-III-like YPD8_2378 PF00035 Double-stranded RNA binding motif YPD8_2379 PF01926 50S ribosome-binding GTPase YPD8_2379 PF07650 KH domain YPD8_2380 PF11967 Recombination protein O N terminal YPD8_2380 PF02565 Recombination protein O C terminal YPD8_2381 PF02796 Helix-turn-helix domain of resolvase YPD8_2381 PF00665 Integrase core domain YPD8_2382 PF01695 IstB-like ATP binding protein YPD8_2383 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ YPD8_2384 PF01648 4'-phosphopantetheinyl transferase superfamily YPD8_2385 PF01797 Transposase IS200 like YPD8_2386 PF01418 Helix-turn-helix domain, rpiR family YPD8_2386 PF01380 SIS domain YPD8_2387 PF01380 SIS domain YPD8_2389 PF14437 MafB19-like deaminase YPD8_2390 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD8_2390 PF01464 Transglycosylase SLT domain YPD8_2391 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal YPD8_2391 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain YPD8_2391 PF02769 AIR synthase related protein, C-terminal domain YPD8_2392 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain YPD8_2392 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal YPD8_2392 PF02769 AIR synthase related protein, C-terminal domain YPD8_2395 PF01797 Transposase IS200 like YPD8_2396 PF00512 His Kinase A (phospho-acceptor) domain YPD8_2396 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_2397 PF13942 YfhG lipoprotein YPD8_2398 PF00158 Sigma-54 interaction domain YPD8_2398 PF00072 Response regulator receiver domain YPD8_2399 PF02540 NAD synthase YPD8_2399 PF00795 Carbon-nitrogen hydrolase YPD8_2400 PF00543 Nitrogen regulatory protein P-II YPD8_2401 PF14503 YhfZ C-terminal domain YPD8_2401 PF14502 Helix-turn-helix domain YPD8_2402 PF14503 YhfZ C-terminal domain YPD8_2402 PF14502 Helix-turn-helix domain YPD8_2403 PF00970 Oxidoreductase FAD-binding domain YPD8_2403 PF00042 Globin YPD8_2403 PF00175 Oxidoreductase NAD-binding domain YPD8_2404 PF00464 Serine hydroxymethyltransferase YPD8_2405 PF13505 Outer membrane protein beta-barrel domain YPD8_2406 PF12832 MFS_1 like family YPD8_2407 PF00874 PRD domain YPD8_2408 PF06226 Protein of unknown function (DUF1007) YPD8_2409 PF03824 High-affinity nickel-transport protein YPD8_2410 PF01797 Transposase IS200 like YPD8_2411 PF00459 Inositol monophosphatase family YPD8_2412 PF00588 SpoU rRNA Methylase family YPD8_2413 PF02082 Transcriptional regulator YPD8_2414 PF00266 Aminotransferase class-V YPD8_2415 PF01592 NifU-like N terminal domain YPD8_2416 PF07743 HSCB C-terminal oligomerisation domain YPD8_2416 PF00226 DnaJ domain YPD8_2417 PF00012 Hsp70 protein YPD8_2418 PF00111 2Fe-2S iron-sulfur cluster binding domain YPD8_2419 PF00883 Cytosol aminopeptidase family, catalytic domain YPD8_2419 PF12404 Peptidase YPD8_2420 PF14581 SseB protein C-terminal domain YPD8_2420 PF07179 SseB protein N-terminal domain YPD8_2422 PF03797 Autotransporter beta-domain YPD8_2422 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPD8_2422 PF03212 Pertactin YPD8_2423 PF03797 Autotransporter beta-domain YPD8_2423 PF03212 Pertactin YPD8_2423 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPD8_2425 PF00334 Nucleoside diphosphate kinase YPD8_2426 PF04055 Radical SAM superfamily YPD8_2428 PF13464 Domain of unknown function (DUF4115) YPD8_2429 PF04551 GcpE protein YPD8_2430 PF13393 Histidyl-tRNA synthetase YPD8_2430 PF03129 Anticodon binding domain YPD8_2431 PF09976 Tetratricopeptide repeat-like domain YPD8_2432 PF13360 PQQ-like domain YPD8_2433 PF01926 50S ribosome-binding GTPase YPD8_2433 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YPD8_2435 PF02601 Exonuclease VII, large subunit YPD8_2435 PF13742 OB-fold nucleic acid binding domain YPD8_2436 PF00478 IMP dehydrogenase / GMP reductase domain YPD8_2436 PF00571 CBS domain YPD8_2437 PF02540 NAD synthase YPD8_2437 PF00958 GMP synthase C terminal domain YPD8_2437 PF00117 Glutamine amidotransferase class-I YPD8_2438 PF01797 Transposase IS200 like YPD8_2439 PF05638 Type VI secretion system effector, Hcp YPD8_2441 PF00872 Transposase, Mutator family YPD8_2443 PF08543 Phosphomethylpyrimidine kinase YPD8_2446 PF00781 Diacylglycerol kinase catalytic domain YPD8_2448 PF07411 Domain of unknown function (DUF1508) YPD8_2449 PF00072 Response regulator receiver domain YPD8_2449 PF00486 Transcriptional regulatory protein, C terminal YPD8_2450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_2450 PF00672 HAMP domain YPD8_2450 PF00512 His Kinase A (phospho-acceptor) domain YPD8_2451 PF07690 Major Facilitator Superfamily YPD8_2452 PF00873 AcrB/AcrD/AcrF family YPD8_2453 PF00873 AcrB/AcrD/AcrF family YPD8_2454 PF13533 Biotin-lipoyl like YPD8_2455 PF08402 TOBE domain YPD8_2455 PF00005 ABC transporter YPD8_2456 PF00392 Bacterial regulatory proteins, gntR family YPD8_2456 PF00155 Aminotransferase class I and II YPD8_2457 PF00202 Aminotransferase class-III YPD8_2459 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_2460 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_2461 PF00012 Hsp70 protein YPD8_2462 PF01769 Divalent cation transporter YPD8_2462 PF00571 CBS domain YPD8_2462 PF03448 MgtE intracellular N domain YPD8_2463 PF02541 Ppx/GppA phosphatase family YPD8_2464 PF13089 Polyphosphate kinase N-terminal domain YPD8_2464 PF17941 Polyphosphate kinase C-terminal domain 1 YPD8_2464 PF13090 Polyphosphate kinase C-terminal domain 2 YPD8_2464 PF02503 Polyphosphate kinase middle domain YPD8_2465 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_2466 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_2467 PF00005 ABC transporter YPD8_2470 PF13302 Acetyltransferase (GNAT) domain YPD8_2471 PF00551 Formyl transferase YPD8_2472 PF02769 AIR synthase related protein, C-terminal domain YPD8_2472 PF00586 AIR synthase related protein, N-terminal domain YPD8_2474 PF01797 Transposase IS200 like YPD8_2475 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YPD8_2475 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YPD8_2477 PF01066 CDP-alcohol phosphatidyltransferase YPD8_2479 PF01553 Acyltransferase YPD8_2480 PF12147 Putative methyltransferase YPD8_2480 PF12146 Serine aminopeptidase, S33 YPD8_2481 PF00782 Dual specificity phosphatase, catalytic domain YPD8_2484 PF01695 IstB-like ATP binding protein YPD8_2485 PF02796 Helix-turn-helix domain of resolvase YPD8_2485 PF00665 Integrase core domain YPD8_2486 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_2486 PF03466 LysR substrate binding domain YPD8_2487 PF00248 Aldo/keto reductase family YPD8_2488 PF00248 Aldo/keto reductase family YPD8_2493 PF00872 Transposase, Mutator family YPD8_2494 PF08007 Cupin superfamily protein YPD8_2496 PF03212 Pertactin YPD8_2496 PF13018 Extended Signal Peptide of Type V secretion system YPD8_2496 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPD8_2496 PF03797 Autotransporter beta-domain YPD8_2497 PF05638 Type VI secretion system effector, Hcp YPD8_2501 PF06832 Penicillin-Binding Protein C-terminus Family YPD8_2501 PF00912 Transglycosylase YPD8_2501 PF00905 Penicillin binding protein transpeptidase domain YPD8_2502 PF00872 Transposase, Mutator family YPD8_2503 PF03611 PTS system sugar-specific permease component YPD8_2504 PF00293 NUDIX domain YPD8_2505 PF12850 Calcineurin-like phosphoesterase superfamily domain YPD8_2507 PF08338 Domain of unknown function (DUF1731) YPD8_2507 PF01370 NAD dependent epimerase/dehydratase family YPD8_2508 PF00005 ABC transporter YPD8_2509 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_2510 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_2511 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD8_2512 PF02441 Flavoprotein YPD8_2513 PF00156 Phosphoribosyl transferase domain YPD8_2514 PF02674 Colicin V production protein YPD8_2515 PF05036 Sporulation related domain YPD8_2516 PF02875 Mur ligase family, glutamate ligase domain YPD8_2516 PF08245 Mur ligase middle domain YPD8_2517 PF01039 Carboxyl transferase domain YPD8_2517 PF17848 Acetyl-coA carboxylase zinc finger domain YPD8_2518 PF09335 SNARE associated Golgi protein YPD8_2519 PF01416 tRNA pseudouridine synthase YPD8_2520 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPD8_2520 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPD8_2521 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPD8_2521 PF11890 Domain of unknown function (DUF3410) YPD8_2521 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPD8_2523 PF00892 EamA-like transporter family YPD8_2525 PF00419 Fimbrial protein YPD8_2526 PF01177 Asp/Glu/Hydantoin racemase YPD8_2527 PF02801 Beta-ketoacyl synthase, C-terminal domain YPD8_2527 PF00109 Beta-ketoacyl synthase, N-terminal domain YPD8_2530 PF04315 Elongation factor P hydroxylase YPD8_2531 PF01925 Sulfite exporter TauE/SafE YPD8_2532 PF03411 Penicillin-insensitive murein endopeptidase YPD8_2533 PF01264 Chorismate synthase YPD8_2534 PF05175 Methyltransferase small domain YPD8_2535 PF01713 Smr domain YPD8_2536 PF00300 Histidine phosphatase superfamily (branch 1) YPD8_2537 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPD8_2537 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPD8_2537 PF00378 Enoyl-CoA hydratase/isomerase YPD8_2538 PF02803 Thiolase, C-terminal domain YPD8_2538 PF00108 Thiolase, N-terminal domain YPD8_2539 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) YPD8_2540 PF04333 MlaA lipoprotein YPD8_2541 PF03918 Cytochrome C biogenesis protein YPD8_2542 PF03918 Cytochrome C biogenesis protein YPD8_2543 PF08534 Redoxin YPD8_2544 PF01578 Cytochrome C assembly protein YPD8_2544 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal YPD8_2545 PF03100 CcmE YPD8_2546 PF04995 Heme exporter protein D (CcmD) YPD8_2547 PF01578 Cytochrome C assembly protein YPD8_2548 PF03379 CcmB protein YPD8_2549 PF00005 ABC transporter YPD8_2551 PF04011 LemA family YPD8_2553 PF08274 PhnA Zinc-Ribbon YPD8_2553 PF03831 PhnA domain YPD8_2558 PF04717 Type VI secretion system, phage-baseplate injector YPD8_2561 PF01695 IstB-like ATP binding protein YPD8_2562 PF02796 Helix-turn-helix domain of resolvase YPD8_2562 PF00665 Integrase core domain YPD8_2570 PF00577 Outer membrane usher protein YPD8_2570 PF13954 PapC N-terminal domain YPD8_2570 PF13953 PapC C-terminal domain YPD8_2571 PF00872 Transposase, Mutator family YPD8_2572 PF00577 Outer membrane usher protein YPD8_2572 PF13954 PapC N-terminal domain YPD8_2572 PF13953 PapC C-terminal domain YPD8_2573 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD8_2573 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD8_2574 PF16970 Type-1 fimbrial protein, A YPD8_2575 PF10431 C-terminal, D2-small domain, of ClpB protein YPD8_2575 PF17871 AAA lid domain YPD8_2575 PF07724 AAA domain (Cdc48 subfamily) YPD8_2575 PF00004 ATPase family associated with various cellular activities (AAA) YPD8_2585 PF13406 Transglycosylase SLT domain YPD8_2587 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_2588 PF00005 ABC transporter YPD8_2591 PF00384 Molybdopterin oxidoreductase YPD8_2591 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPD8_2591 PF01568 Molydopterin dinucleotide binding domain YPD8_2592 PF12800 4Fe-4S binding domain YPD8_2592 PF13247 4Fe-4S dicluster domain YPD8_2593 PF04976 DMSO reductase anchor subunit (DmsC) YPD8_2594 PF02613 Nitrate reductase delta subunit YPD8_2596 PF05643 Putative bacterial lipoprotein (DUF799) YPD8_2598 PF03783 Curli production assembly/transport component CsgG YPD8_2600 PF01292 Prokaryotic cytochrome b561 YPD8_2601 PF00155 Aminotransferase class I and II YPD8_2602 PF07350 Protein of unknown function (DUF1479) YPD8_2603 PF02685 Glucokinase YPD8_2605 PF03466 LysR substrate binding domain YPD8_2605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_2606 PF00248 Aldo/keto reductase family YPD8_2607 PF01566 Natural resistance-associated macrophage protein YPD8_2608 PF01773 Na+ dependent nucleoside transporter N-terminus YPD8_2608 PF07662 Na+ dependent nucleoside transporter C-terminus YPD8_2608 PF07670 Nucleoside recognition YPD8_2609 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPD8_2610 PF01797 Transposase IS200 like YPD8_2613 PF00533 BRCA1 C Terminus (BRCT) domain YPD8_2613 PF01653 NAD-dependent DNA ligase adenylation domain YPD8_2613 PF03120 NAD-dependent DNA ligase OB-fold domain YPD8_2613 PF03119 NAD-dependent DNA ligase C4 zinc finger domain YPD8_2613 PF12826 Helix-hairpin-helix motif YPD8_2614 PF04354 ZipA, C-terminal FtsZ-binding domain YPD8_2616 PF00291 Pyridoxal-phosphate dependent enzyme YPD8_2617 PF05524 PEP-utilising enzyme, N-terminal YPD8_2617 PF00391 PEP-utilising enzyme, mobile domain YPD8_2617 PF02896 PEP-utilising enzyme, TIM barrel domain YPD8_2618 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPD8_2619 PF01797 Transposase IS200 like YPD8_2620 PF00512 His Kinase A (phospho-acceptor) domain YPD8_2620 PF00672 HAMP domain YPD8_2620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_2620 PF16527 Two-component sensor protein CpxA, periplasmic domain YPD8_2621 PF00486 Transcriptional regulatory protein, C terminal YPD8_2621 PF00072 Response regulator receiver domain YPD8_2622 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD8_2623 PF00005 ABC transporter YPD8_2623 PF02687 FtsX-like permease family YPD8_2623 PF12704 MacB-like periplasmic core domain YPD8_2624 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD8_2624 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPD8_2625 PF00474 Sodium:solute symporter family YPD8_2626 PF00557 Metallopeptidase family M24 YPD8_2626 PF05195 Aminopeptidase P, N-terminal domain YPD8_2627 PF00155 Aminotransferase class I and II YPD8_2629 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_2629 PF00512 His Kinase A (phospho-acceptor) domain YPD8_2629 PF00672 HAMP domain YPD8_2630 PF00486 Transcriptional regulatory protein, C terminal YPD8_2630 PF00072 Response regulator receiver domain YPD8_2632 PF00291 Pyridoxal-phosphate dependent enzyme YPD8_2633 PF00005 ABC transporter YPD8_2634 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_2635 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_2637 PF07690 Major Facilitator Superfamily YPD8_2638 PF01418 Helix-turn-helix domain, rpiR family YPD8_2638 PF01380 SIS domain YPD8_2639 PF04074 YhcH/YjgK/YiaL YPD8_2640 PF00480 ROK family YPD8_2641 PF12468 Type III secretion system leucine rich repeat protein YPD8_2643 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase YPD8_2644 PF00701 Dihydrodipicolinate synthetase family YPD8_2645 PF04261 Dyp-type peroxidase family YPD8_2646 PF06572 Protein of unknown function (DUF1131) YPD8_2647 PF04076 Bacterial OB fold (BOF) protein YPD8_2648 PF03212 Pertactin YPD8_2648 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPD8_2648 PF03797 Autotransporter beta-domain YPD8_2648 PF13018 Extended Signal Peptide of Type V secretion system YPD8_2650 PF00583 Acetyltransferase (GNAT) family YPD8_2651 PF01218 Coproporphyrinogen III oxidase YPD8_2652 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 YPD8_2653 PF01515 Phosphate acetyl/butaryl transferase YPD8_2653 PF03949 Malic enzyme, NAD binding domain YPD8_2653 PF00390 Malic enzyme, N-terminal domain YPD8_2654 PF00293 NUDIX domain YPD8_2655 PF03264 NapC/NirT cytochrome c family, N-terminal region YPD8_2656 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) YPD8_2657 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPD8_2657 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPD8_2657 PF01568 Molydopterin dinucleotide binding domain YPD8_2657 PF00384 Molybdopterin oxidoreductase YPD8_2658 PF12838 4Fe-4S dicluster domain YPD8_2658 PF13187 4Fe-4S dicluster domain YPD8_2659 PF00072 Response regulator receiver domain YPD8_2659 PF00196 Bacterial regulatory proteins, luxR family YPD8_2660 PF00873 AcrB/AcrD/AcrF family YPD8_2662 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPD8_2663 PF04055 Radical SAM superfamily YPD8_2663 PF13186 Iron-sulfur cluster-binding domain YPD8_2664 PF00884 Sulfatase YPD8_2665 PF00005 ABC transporter YPD8_2665 PF08402 TOBE domain YPD8_2666 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_2669 PF03960 ArsC family YPD8_2670 PF01546 Peptidase family M20/M25/M40 YPD8_2670 PF07687 Peptidase dimerisation domain YPD8_2671 PF02557 D-alanyl-D-alanine carboxypeptidase YPD8_2672 PF08351 Domain of unknown function (DUF1726) YPD8_2672 PF17176 tRNA-binding domain YPD8_2672 PF13718 GNAT acetyltransferase 2 YPD8_2672 PF05127 Helicase YPD8_2673 PF04284 Protein of unknown function (DUF441) YPD8_2674 PF04228 Putative neutral zinc metallopeptidase YPD8_2675 PF01259 SAICAR synthetase YPD8_2676 PF01797 Transposase IS200 like YPD8_2677 PF06804 NlpB/DapX lipoprotein YPD8_2678 PF00701 Dihydrodipicolinate synthetase family YPD8_2679 PF01842 ACT domain YPD8_2680 PF00578 AhpC/TSA family YPD8_2682 PF01594 AI-2E family transporter YPD8_2683 PF01435 Peptidase family M48 YPD8_2683 PF07720 Tetratricopeptide repeat YPD8_2684 PF03960 ArsC family YPD8_2685 PF00308 Bacterial dnaA protein YPD8_2686 PF01797 Transposase IS200 like YPD8_2687 PF09190 DALR domain YPD8_2687 PF01406 tRNA synthetases class I (C) catalytic domain YPD8_2688 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPD8_2689 PF00149 Calcineurin-like phosphoesterase YPD8_2690 PF00731 AIR carboxylase YPD8_2691 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain YPD8_2691 PF02222 ATP-grasp domain YPD8_2693 PF00005 ABC transporter YPD8_2694 PF13472 GDSL-like Lipase/Acylhydrolase family YPD8_2695 PF00106 short chain dehydrogenase YPD8_2696 PF00085 Thioredoxin YPD8_2697 PF16200 C-terminal region of band_7 YPD8_2697 PF01145 SPFH domain / Band 7 family YPD8_2698 PF01957 NfeD-like C-terminal, partner-binding YPD8_2699 PF13411 MerR HTH family regulatory protein YPD8_2700 PF00403 Heavy-metal-associated domain YPD8_2701 PF01963 TraB family YPD8_2702 PF04073 Aminoacyl-tRNA editing domain YPD8_2703 PF02872 5'-nucleotidase, C-terminal domain YPD8_2703 PF00149 Calcineurin-like phosphoesterase YPD8_2704 PF02872 5'-nucleotidase, C-terminal domain YPD8_2704 PF00149 Calcineurin-like phosphoesterase YPD8_2705 PF07690 Major Facilitator Superfamily YPD8_2706 PF02254 TrkA-N domain YPD8_2706 PF00999 Sodium/hydrogen exchanger family YPD8_2707 PF00294 pfkB family carbohydrate kinase YPD8_2708 PF02706 Chain length determinant protein YPD8_2709 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPD8_2709 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPD8_2709 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPD8_2709 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPD8_2710 PF00535 Glycosyl transferase family 2 YPD8_2711 PF00483 Nucleotidyl transferase YPD8_2711 PF01050 Mannose-6-phosphate isomerase YPD8_2712 PF01370 NAD dependent epimerase/dehydratase family YPD8_2713 PF16363 GDP-mannose 4,6 dehydratase YPD8_2714 PF16363 GDP-mannose 4,6 dehydratase YPD8_2715 PF00534 Glycosyl transferases group 1 YPD8_2715 PF13439 Glycosyltransferase Family 4 YPD8_2720 PF01370 NAD dependent epimerase/dehydratase family YPD8_2721 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPD8_2722 PF16363 GDP-mannose 4,6 dehydratase YPD8_2723 PF00483 Nucleotidyl transferase YPD8_2724 PF00175 Oxidoreductase NAD-binding domain YPD8_2724 PF00970 Oxidoreductase FAD-binding domain YPD8_2724 PF00111 2Fe-2S iron-sulfur cluster binding domain YPD8_2725 PF00762 Ferrochelatase YPD8_2726 PF05191 Adenylate kinase, active site lid YPD8_2727 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_2727 PF00183 Hsp90 protein YPD8_2728 PF13662 Toprim domain YPD8_2728 PF02132 RecR protein YPD8_2729 PF02575 YbaB/EbfC DNA-binding family YPD8_2730 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding YPD8_2730 PF12170 DNA polymerase III tau subunit V interacting with alpha YPD8_2730 PF12169 DNA polymerase III subunits gamma and tau domain III YPD8_2731 PF00156 Phosphoribosyl transferase domain YPD8_2733 PF12795 Mechanosensitive ion channel porin domain YPD8_2733 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPD8_2733 PF00924 Mechanosensitive ion channel YPD8_2734 PF02635 DsrE/DsrF-like family YPD8_2735 PF00440 Bacterial regulatory proteins, tetR family YPD8_2735 PF08361 MAATS-type transcriptional repressor, C-terminal region YPD8_2736 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD8_2736 PF00529 HlyD membrane-fusion protein of T1SS YPD8_2737 PF00873 AcrB/AcrD/AcrF family YPD8_2739 PF10757 Biofilm formation regulator YbaJ YPD8_2740 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPD8_2741 PF09619 Type III secretion system lipoprotein chaperone (YscW) YPD8_2743 PF00909 Ammonium Transporter Family YPD8_2744 PF00543 Nitrogen regulatory protein P-II YPD8_2745 PF00005 ABC transporter YPD8_2745 PF00664 ABC transporter transmembrane region YPD8_2746 PF00664 ABC transporter transmembrane region YPD8_2746 PF00005 ABC transporter YPD8_2747 PF13404 AsnC-type helix-turn-helix domain YPD8_2747 PF01037 Lrp/AsnC ligand binding domain YPD8_2748 PF00291 Pyridoxal-phosphate dependent enzyme YPD8_2750 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPD8_2750 PF12793 Sugar transport-related sRNA regulator N-term YPD8_2751 PF06508 Queuosine biosynthesis protein QueC YPD8_2754 PF13145 PPIC-type PPIASE domain YPD8_2755 PF02190 ATP-dependent protease La (LON) substrate-binding domain YPD8_2755 PF05362 Lon protease (S16) C-terminal proteolytic domain YPD8_2755 PF00004 ATPase family associated with various cellular activities (AAA) YPD8_2756 PF07724 AAA domain (Cdc48 subfamily) YPD8_2756 PF06689 ClpX C4-type zinc finger YPD8_2756 PF10431 C-terminal, D2-small domain, of ClpB protein YPD8_2757 PF00574 Clp protease YPD8_2758 PF05698 Bacterial trigger factor protein (TF) C-terminus YPD8_2758 PF05697 Bacterial trigger factor protein (TF) YPD8_2758 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPD8_2759 PF01722 BolA-like protein YPD8_2760 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPD8_2760 PF03923 Uncharacterized lipoprotein YPD8_2761 PF07690 Major Facilitator Superfamily YPD8_2762 PF03502 Nucleoside-specific channel-forming protein, Tsx YPD8_2763 PF06481 COX Aromatic Rich Motif YPD8_2763 PF00116 Cytochrome C oxidase subunit II, periplasmic domain YPD8_2764 PF00115 Cytochrome C and Quinol oxidase polypeptide I YPD8_2765 PF00510 Cytochrome c oxidase subunit III YPD8_2766 PF03626 Prokaryotic Cytochrome C oxidase subunit IV YPD8_2767 PF01040 UbiA prenyltransferase family YPD8_2768 PF07690 Major Facilitator Superfamily YPD8_2769 PF04461 Protein of unknown function (DUF520) YPD8_2770 PF08546 Ketopantoate reductase PanE/ApbA C terminal YPD8_2770 PF02558 Ketopantoate reductase PanE/ApbA YPD8_2771 PF01965 DJ-1/PfpI family YPD8_2772 PF02926 THUMP domain YPD8_2772 PF02568 Thiamine biosynthesis protein (ThiI) YPD8_2773 PF02568 Thiamine biosynthesis protein (ThiI) YPD8_2773 PF02926 THUMP domain YPD8_2774 PF00348 Polyprenyl synthetase YPD8_2775 PF02780 Transketolase, C-terminal domain YPD8_2775 PF02779 Transketolase, pyrimidine binding domain YPD8_2775 PF13292 1-deoxy-D-xylulose-5-phosphate synthase YPD8_2776 PF01797 Transposase IS200 like YPD8_2777 PF04608 Phosphatidylglycerophosphatase A YPD8_2778 PF02769 AIR synthase related protein, C-terminal domain YPD8_2778 PF00586 AIR synthase related protein, N-terminal domain YPD8_2779 PF01029 NusB family YPD8_2780 PF00885 6,7-dimethyl-8-ribityllumazine synthase YPD8_2781 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPD8_2781 PF01872 RibD C-terminal domain YPD8_2782 PF03477 ATP cone domain YPD8_2785 PF01797 Transposase IS200 like YPD8_2786 PF07549 SecD/SecF GG Motif YPD8_2786 PF02355 Protein export membrane protein YPD8_2787 PF07549 SecD/SecF GG Motif YPD8_2787 PF13721 SecD export protein N-terminal TM region YPD8_2787 PF02355 Protein export membrane protein YPD8_2788 PF02699 Preprotein translocase subunit YPD8_2789 PF01702 Queuine tRNA-ribosyltransferase YPD8_2790 PF02547 Queuosine biosynthesis protein YPD8_2791 PF04336 Acyl carrier protein phosphodiesterase YPD8_2792 PF10417 C-terminal domain of 1-Cys peroxiredoxin YPD8_2792 PF00578 AhpC/TSA family YPD8_2795 PF02903 Alpha amylase, N-terminal ig-like domain YPD8_2795 PF00128 Alpha amylase, catalytic domain YPD8_2796 PF02796 Helix-turn-helix domain of resolvase YPD8_2796 PF00665 Integrase core domain YPD8_2797 PF01695 IstB-like ATP binding protein YPD8_2798 PF00128 Alpha amylase, catalytic domain YPD8_2798 PF02903 Alpha amylase, N-terminal ig-like domain YPD8_2799 PF00324 Amino acid permease YPD8_2800 PF05525 Branched-chain amino acid transport protein YPD8_2801 PF12849 PBP superfamily domain YPD8_2802 PF00989 PAS fold YPD8_2802 PF00512 His Kinase A (phospho-acceptor) domain YPD8_2802 PF11808 Phosphate regulon sensor protein PhoR YPD8_2802 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_2803 PF00072 Response regulator receiver domain YPD8_2803 PF00486 Transcriptional regulatory protein, C terminal YPD8_2804 PF00149 Calcineurin-like phosphoesterase YPD8_2804 PF12320 Type 5 capsule protein repressor C-terminal domain YPD8_2805 PF13476 AAA domain YPD8_2806 PF00480 ROK family YPD8_2807 PF04381 Putative exonuclease, RdgC YPD8_2808 PF01202 Shikimate kinase YPD8_2810 PF08241 Methyltransferase domain YPD8_2811 PF07238 PilZ domain YPD8_2811 PF07317 Flagellar regulator YcgR YPD8_2812 PF00171 Aldehyde dehydrogenase family YPD8_2813 PF00696 Amino acid kinase family YPD8_2813 PF01472 PUA domain YPD8_2814 PF07417 Sigma factor-binding transcriptional regulator Crl YPD8_2816 PF00156 Phosphoribosyl transferase domain YPD8_2819 PF01546 Peptidase family M20/M25/M40 YPD8_2819 PF07687 Peptidase dimerisation domain YPD8_2820 PF11799 impB/mucB/samB family C-terminal domain YPD8_2820 PF11798 IMS family HHH motif YPD8_2820 PF00817 impB/mucB/samB family YPD8_2821 PF03009 Glycerophosphoryl diester phosphodiesterase family YPD8_2822 PF02424 ApbE family YPD8_2823 PF00970 Oxidoreductase FAD-binding domain YPD8_2823 PF00111 2Fe-2S iron-sulfur cluster binding domain YPD8_2823 PF00175 Oxidoreductase NAD-binding domain YPD8_2824 PF02508 Rnf-Nqr subunit, membrane protein YPD8_2825 PF02508 Rnf-Nqr subunit, membrane protein YPD8_2826 PF04205 FMN-binding domain YPD8_2827 PF03116 NQR2, RnfD, RnfE family YPD8_2828 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) YPD8_2828 PF11973 NQRA C-terminal domain YPD8_2829 PF03734 L,D-transpeptidase catalytic domain YPD8_2830 PF13230 Glutamine amidotransferases class-II YPD8_2831 PF13580 SIS domain YPD8_2832 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPD8_2832 PF09317 Domain of unknown function (DUF1974) YPD8_2832 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YPD8_2834 PF18071 HMW1C N-terminal YPD8_2834 PF18254 HMW1 domain 2 YPD8_2835 PF05860 haemagglutination activity domain YPD8_2836 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPD8_2836 PF08479 POTRA domain, ShlB-type YPD8_2837 PF01546 Peptidase family M20/M25/M40 YPD8_2837 PF07687 Peptidase dimerisation domain YPD8_2838 PF00266 Aminotransferase class-V YPD8_2839 PF02796 Helix-turn-helix domain of resolvase YPD8_2839 PF00665 Integrase core domain YPD8_2840 PF01695 IstB-like ATP binding protein YPD8_2841 PF00266 Aminotransferase class-V YPD8_2842 PF00005 ABC transporter YPD8_2844 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_2845 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD8_2847 PF01425 Amidase YPD8_2849 PF07690 Major Facilitator Superfamily YPD8_2850 PF03591 AzlC protein YPD8_2851 PF05437 Branched-chain amino acid transport protein (AzlD) YPD8_2852 PF01047 MarR family YPD8_2853 PF00529 HlyD membrane-fusion protein of T1SS YPD8_2853 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD8_2854 PF07690 Major Facilitator Superfamily YPD8_2855 PF00588 SpoU rRNA Methylase family YPD8_2855 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPD8_2856 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPD8_2856 PF00588 SpoU rRNA Methylase family YPD8_2857 PF00085 Thioredoxin YPD8_2859 PF13380 CoA binding domain YPD8_2859 PF13607 Succinyl-CoA ligase like flavodoxin domain YPD8_2859 PF00583 Acetyltransferase (GNAT) family YPD8_2860 PF13091 PLD-like domain YPD8_2861 PF10043 Predicted periplasmic lipoprotein (DUF2279) YPD8_2863 PF00004 ATPase family associated with various cellular activities (AAA) YPD8_2863 PF07724 AAA domain (Cdc48 subfamily) YPD8_2863 PF17871 AAA lid domain YPD8_2863 PF02861 Clp amino terminal domain, pathogenicity island component YPD8_2863 PF10431 C-terminal, D2-small domain, of ClpB protein YPD8_2865 PF00849 RNA pseudouridylate synthase YPD8_2865 PF01479 S4 domain YPD8_2866 PF13525 Outer membrane lipoprotein YPD8_2867 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YPD8_2868 PF01797 Transposase IS200 like YPD8_2869 PF01817 Chorismate mutase type II YPD8_2869 PF00800 Prephenate dehydratase YPD8_2870 PF02796 Helix-turn-helix domain of resolvase YPD8_2870 PF00665 Integrase core domain YPD8_2871 PF01695 IstB-like ATP binding protein YPD8_2872 PF01817 Chorismate mutase type II YPD8_2872 PF00800 Prephenate dehydratase YPD8_2873 PF01817 Chorismate mutase type II YPD8_2873 PF02153 Prephenate dehydrogenase YPD8_2874 PF00793 DAHP synthetase I family YPD8_2875 PF00072 Response regulator receiver domain YPD8_2875 PF04397 LytTr DNA-binding domain YPD8_2876 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPD8_2877 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPD8_2878 PF04338 Protein of unknown function, DUF481 YPD8_2879 PF01797 Transposase IS200 like YPD8_2880 PF01245 Ribosomal protein L19 YPD8_2881 PF01746 tRNA (Guanine-1)-methyltransferase YPD8_2882 PF01782 RimM N-terminal domain YPD8_2882 PF05239 PRC-barrel domain YPD8_2883 PF02881 SRP54-type protein, helical bundle domain YPD8_2883 PF00448 SRP54-type protein, GTPase domain YPD8_2883 PF02978 Signal peptide binding domain YPD8_2884 PF01578 Cytochrome C assembly protein YPD8_2885 PF01595 Cyclin M transmembrane N-terminal domain YPD8_2885 PF03471 Transporter associated domain YPD8_2885 PF00571 CBS domain YPD8_2886 PF01797 Transposase IS200 like YPD8_2887 PF02664 S-Ribosylhomocysteinase (LuxS) YPD8_2888 PF04262 Glutamate-cysteine ligase YPD8_2889 PF09335 SNARE associated Golgi protein YPD8_2890 PF13419 Haloacid dehalogenase-like hydrolase YPD8_2891 PF01411 tRNA synthetases class II (A) YPD8_2891 PF02272 DHHA1 domain YPD8_2891 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPD8_2892 PF02631 RecX family YPD8_2893 PF00154 recA bacterial DNA recombination protein YPD8_2894 PF02464 Competence-damaged protein YPD8_2895 PF07690 Major Facilitator Superfamily YPD8_2898 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD8_2898 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPD8_2899 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPD8_2899 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD8_2900 PF02780 Transketolase, C-terminal domain YPD8_2900 PF02779 Transketolase, pyrimidine binding domain YPD8_2901 PF00456 Transketolase, thiamine diphosphate binding domain YPD8_2902 PF02653 Branched-chain amino acid transport system / permease component YPD8_2903 PF00005 ABC transporter YPD8_2906 PF00141 Peroxidase YPD8_2907 PF00141 Peroxidase YPD8_2908 PF07361 Cytochrome b562 YPD8_2909 PF02613 Nitrate reductase delta subunit YPD8_2910 PF04976 DMSO reductase anchor subunit (DmsC) YPD8_2911 PF12800 4Fe-4S binding domain YPD8_2911 PF13247 4Fe-4S dicluster domain YPD8_2912 PF01568 Molydopterin dinucleotide binding domain YPD8_2912 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPD8_2912 PF00384 Molybdopterin oxidoreductase YPD8_2913 PF00596 Class II Aldolase and Adducin N-terminal domain YPD8_2914 PF00455 DeoR C terminal sensor domain YPD8_2914 PF08220 DeoR-like helix-turn-helix domain YPD8_2916 PF01797 Transposase IS200 like YPD8_2917 PF00005 ABC transporter YPD8_2918 PF02653 Branched-chain amino acid transport system / permease component YPD8_2919 PF02653 Branched-chain amino acid transport system / permease component YPD8_2920 PF01261 Xylose isomerase-like TIM barrel YPD8_2921 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPD8_2921 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD8_2922 PF05681 Fumarate hydratase (Fumerase) YPD8_2922 PF05683 Fumarase C-terminus YPD8_2923 PF00557 Metallopeptidase family M24 YPD8_2926 PF00593 TonB dependent receptor YPD8_2926 PF07715 TonB-dependent Receptor Plug Domain YPD8_2927 PF14376 Haem-binding domain YPD8_2927 PF00034 Cytochrome c YPD8_2927 PF03150 Di-haem cytochrome c peroxidase YPD8_2928 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD8_2929 PF01022 Bacterial regulatory protein, arsR family YPD8_2930 PF02040 Arsenical pump membrane protein YPD8_2931 PF13936 Helix-turn-helix domain YPD8_2931 PF04198 Putative sugar-binding domain YPD8_2932 PF02734 DAK2 domain YPD8_2933 PF02733 Dak1 domain YPD8_2935 PF00107 Zinc-binding dehydrogenase YPD8_2935 PF08240 Alcohol dehydrogenase GroES-like domain YPD8_2936 PF02502 Ribose/Galactose Isomerase YPD8_2937 PF01624 MutS domain I YPD8_2937 PF00488 MutS domain V YPD8_2937 PF05192 MutS domain III YPD8_2937 PF05188 MutS domain II YPD8_2937 PF05190 MutS family domain IV YPD8_2938 PF04545 Sigma-70, region 4 YPD8_2938 PF04539 Sigma-70 region 3 YPD8_2938 PF04542 Sigma-70 region 2 YPD8_2938 PF00140 Sigma-70 factor, region 1.2 YPD8_2939 PF01551 Peptidase family M23 YPD8_2939 PF01476 LysM domain YPD8_2941 PF01975 Survival protein SurE YPD8_2942 PF01142 tRNA pseudouridine synthase D (TruD) YPD8_2943 PF02542 YgbB family YPD8_2944 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YPD8_2945 PF04977 Septum formation initiator YPD8_2946 PF12084 Protein of unknown function (DUF3561) YPD8_2948 PF00009 Elongation factor Tu GTP binding domain YPD8_2949 PF01507 Phosphoadenosine phosphosulfate reductase family YPD8_2950 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPD8_2950 PF14824 Sirohaem biosynthesis protein central YPD8_2950 PF10414 Sirohaem synthase dimerisation region YPD8_2952 PF01507 Phosphoadenosine phosphosulfate reductase family YPD8_2953 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPD8_2953 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPD8_2954 PF00175 Oxidoreductase NAD-binding domain YPD8_2954 PF00258 Flavodoxin YPD8_2954 PF00667 FAD binding domain YPD8_2955 PF01242 6-pyruvoyl tetrahydropterin synthase YPD8_2956 PF04055 Radical SAM superfamily YPD8_2957 PF00080 Copper/zinc superoxide dismutase (SODC) YPD8_2958 PF03952 Enolase, N-terminal domain YPD8_2958 PF00113 Enolase, C-terminal TIM barrel domain YPD8_2959 PF00117 Glutamine amidotransferase class-I YPD8_2959 PF06418 CTP synthase N-terminus YPD8_2960 PF03819 MazG nucleotide pyrophosphohydrolase domain YPD8_2961 PF13291 ACT domain YPD8_2961 PF04607 Region found in RelA / SpoT proteins YPD8_2961 PF02824 TGS domain YPD8_2962 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_2962 PF00072 Response regulator receiver domain YPD8_2962 PF00512 His Kinase A (phospho-acceptor) domain YPD8_2962 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPD8_2962 PF01627 Hpt domain YPD8_2962 PF00672 HAMP domain YPD8_2963 PF00595 PDZ domain YPD8_2964 PF01966 HD domain YPD8_2964 PF13286 Phosphohydrolase-associated domain YPD8_2965 PF01048 Phosphorylase superfamily YPD8_2966 PF01497 Periplasmic binding protein YPD8_2967 PF03458 UPF0126 domain YPD8_2968 PF01521 Iron-sulphur cluster biosynthesis YPD8_2969 PF00654 Voltage gated chloride channel YPD8_2970 PF00202 Aminotransferase class-III YPD8_2971 PF01032 FecCD transport family YPD8_2972 PF01497 Periplasmic binding protein YPD8_2973 PF00005 ABC transporter YPD8_2974 PF14814 Bifunctional transglycosylase second domain YPD8_2974 PF00905 Penicillin binding protein transpeptidase domain YPD8_2974 PF00912 Transglycosylase YPD8_2974 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal YPD8_2975 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal YPD8_2976 PF00270 DEAD/DEAH box helicase YPD8_2976 PF04408 Helicase associated domain (HA2) YPD8_2976 PF00271 Helicase conserved C-terminal domain YPD8_2976 PF08482 ATP-dependent helicase C-terminal YPD8_2977 PF02834 LigT like Phosphoesterase YPD8_2978 PF17746 SfsA N-terminal OB domain YPD8_2978 PF03749 Sugar fermentation stimulation protein RE domain YPD8_2979 PF01258 Prokaryotic dksA/traR C4-type zinc finger YPD8_2980 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPD8_2981 PF12627 Probable RNA and SrmB- binding site of polymerase A YPD8_2981 PF01743 Poly A polymerase head domain YPD8_2981 PF12626 Polymerase A arginine-rich C-terminus YPD8_2982 PF01743 Poly A polymerase head domain YPD8_2982 PF12627 Probable RNA and SrmB- binding site of polymerase A YPD8_2982 PF12626 Polymerase A arginine-rich C-terminus YPD8_2983 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) YPD8_2984 PF02548 Ketopantoate hydroxymethyltransferase YPD8_2985 PF02569 Pantoate-beta-alanine ligase YPD8_2986 PF02261 Aspartate decarboxylase YPD8_2987 PF01522 Polysaccharide deacetylase YPD8_2988 PF01061 ABC-2 type transporter YPD8_2989 PF00005 ABC transporter YPD8_2990 PF00484 Carbonic anhydrase YPD8_2991 PF00156 Phosphoribosyl transferase domain YPD8_2992 PF00394 Multicopper oxidase YPD8_2992 PF07731 Multicopper oxidase YPD8_2992 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPD8_2992 PF07732 Multicopper oxidase YPD8_2993 PF00394 Multicopper oxidase YPD8_2993 PF07731 Multicopper oxidase YPD8_2993 PF07732 Multicopper oxidase YPD8_2993 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPD8_2994 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) YPD8_2995 PF17284 Spermidine synthase tetramerisation domain YPD8_2996 PF02675 S-adenosylmethionine decarboxylase YPD8_2997 PF00892 EamA-like transporter family YPD8_2998 PF06062 Uncharacterised protein family (UPF0231) YPD8_2999 PF06434 Aconitate hydratase 2 N-terminus YPD8_2999 PF00330 Aconitase family (aconitate hydratase) YPD8_2999 PF11791 Aconitate B N-terminal domain YPD8_3000 PF01797 Transposase IS200 like YPD8_3001 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPD8_3001 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD8_3002 PF02817 e3 binding domain YPD8_3002 PF00364 Biotin-requiring enzyme YPD8_3002 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPD8_3003 PF17831 Pyruvate dehydrogenase E1 component middle domain YPD8_3003 PF00456 Transketolase, thiamine diphosphate binding domain YPD8_3004 PF00392 Bacterial regulatory proteins, gntR family YPD8_3004 PF07729 FCD domain YPD8_3005 PF00324 Amino acid permease YPD8_3006 PF17113 Regulatory signalling modulator protein AmpE YPD8_3007 PF01510 N-acetylmuramoyl-L-alanine amidase YPD8_3008 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain YPD8_3008 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain YPD8_3009 PF07963 Prokaryotic N-terminal methylation motif YPD8_3010 PF00437 Type II/IV secretion system protein YPD8_3010 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain YPD8_3011 PF00482 Type II secretion system (T2SS), protein F YPD8_3012 PF00478 IMP dehydrogenase / GMP reductase domain YPD8_3013 PF01121 Dephospho-CoA kinase YPD8_3014 PF07072 Cell division protein YPD8_3016 PF00665 Integrase core domain YPD8_3016 PF02796 Helix-turn-helix domain of resolvase YPD8_3017 PF01695 IstB-like ATP binding protein YPD8_3018 PF01119 DNA mismatch repair protein, C-terminal domain YPD8_3018 PF08676 MutL C terminal dimerisation domain YPD8_3020 PF13356 Arm DNA-binding domain YPD8_3020 PF00589 Phage integrase family YPD8_3021 PF03739 Lipopolysaccharide export system permease LptF/LptG YPD8_3022 PF03739 Lipopolysaccharide export system permease LptF/LptG YPD8_3023 PF02789 Cytosol aminopeptidase family, N-terminal domain YPD8_3023 PF00883 Cytosol aminopeptidase family, catalytic domain YPD8_3024 PF04364 DNA polymerase III chi subunit, HolC YPD8_3025 PF08264 Anticodon-binding domain of tRNA YPD8_3025 PF00133 tRNA synthetases class I (I, L, M and V) YPD8_3025 PF10458 Valyl tRNA synthetase tRNA binding arm YPD8_3026 PF00583 Acetyltransferase (GNAT) family YPD8_3027 PF06877 Regulator of ribonuclease activity B YPD8_3028 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPD8_3028 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPD8_3029 PF04074 YhcH/YjgK/YiaL YPD8_3032 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_3033 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_3033 PF12911 N-terminal TM domain of oligopeptide transport permease C YPD8_3034 PF00005 ABC transporter YPD8_3034 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPD8_3035 PF00005 ABC transporter YPD8_3035 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPD8_3036 PF03477 ATP cone domain YPD8_3036 PF13597 Anaerobic ribonucleoside-triphosphate reductase YPD8_3038 PF00392 Bacterial regulatory proteins, gntR family YPD8_3038 PF07702 UTRA domain YPD8_3039 PF06754 Phosphonate metabolism protein PhnG YPD8_3040 PF05845 Bacterial phosphonate metabolism protein (PhnH) YPD8_3041 PF05861 Bacterial phosphonate metabolism protein (PhnI) YPD8_3042 PF06007 Phosphonate metabolism protein PhnJ YPD8_3043 PF00005 ABC transporter YPD8_3044 PF00005 ABC transporter YPD8_3045 PF07969 Amidohydrolase family YPD8_3047 PF12706 Beta-lactamase superfamily domain YPD8_3048 PF13460 NAD(P)H-binding YPD8_3051 PF00005 ABC transporter YPD8_3051 PF03459 TOBE domain YPD8_3051 PF17912 MalK OB fold domain YPD8_3052 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_3054 PF13416 Bacterial extracellular solute-binding protein YPD8_3057 PF13508 Acetyltransferase (GNAT) domain YPD8_3061 PF02321 Outer membrane efflux protein YPD8_3061 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPD8_3062 PF00873 AcrB/AcrD/AcrF family YPD8_3063 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD8_3063 PF00529 HlyD membrane-fusion protein of T1SS YPD8_3064 PF00296 Luciferase-like monooxygenase YPD8_3065 PF01381 Helix-turn-helix YPD8_3066 PF00270 DEAD/DEAH box helicase YPD8_3066 PF00271 Helicase conserved C-terminal domain YPD8_3066 PF12343 Cold shock protein DEAD box A YPD8_3066 PF03880 DbpA RNA binding domain YPD8_3067 PF07719 Tetratricopeptide repeat YPD8_3067 PF13181 Tetratricopeptide repeat YPD8_3068 PF00575 S1 RNA binding domain YPD8_3068 PF03725 3' exoribonuclease family, domain 2 YPD8_3068 PF01138 3' exoribonuclease family, domain 1 YPD8_3068 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain YPD8_3068 PF00013 KH domain YPD8_3069 PF13276 HTH-like domain YPD8_3069 PF00665 Integrase core domain YPD8_3069 PF13333 Integrase core domain YPD8_3071 PF09157 Pseudouridine synthase II TruB, C-terminal YPD8_3071 PF16198 tRNA pseudouridylate synthase B C-terminal domain YPD8_3071 PF01509 TruB family pseudouridylate synthase (N terminal domain) YPD8_3072 PF02033 Ribosome-binding factor A YPD8_3073 PF03144 Elongation factor Tu domain 2 YPD8_3073 PF11987 Translation-initiation factor 2 YPD8_3073 PF08364 Bacterial translation initiation factor IF-2 associated region YPD8_3073 PF04760 Translation initiation factor IF-2, N-terminal region YPD8_3073 PF00009 Elongation factor Tu GTP binding domain YPD8_3074 PF13184 NusA-like KH domain YPD8_3074 PF08529 NusA N-terminal domain YPD8_3074 PF00575 S1 RNA binding domain YPD8_3075 PF17384 RimP C-terminal SH3 domain YPD8_3075 PF02576 RimP N-terminal domain YPD8_3076 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPD8_3076 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPD8_3076 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPD8_3076 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPD8_3077 PF00809 Pterin binding enzyme YPD8_3078 PF06480 FtsH Extracellular YPD8_3078 PF01434 Peptidase family M41 YPD8_3078 PF00004 ATPase family associated with various cellular activities (AAA) YPD8_3078 PF17862 AAA+ lid domain YPD8_3079 PF00004 ATPase family associated with various cellular activities (AAA) YPD8_3079 PF01434 Peptidase family M41 YPD8_3079 PF17862 AAA+ lid domain YPD8_3079 PF06480 FtsH Extracellular YPD8_3080 PF01728 FtsJ-like methyltransferase YPD8_3081 PF01272 Transcription elongation factor, GreA/GreB, C-term YPD8_3081 PF03449 Transcription elongation factor, N-terminal YPD8_3082 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family YPD8_3083 PF00072 Response regulator receiver domain YPD8_3083 PF00486 Transcriptional regulatory protein, C terminal YPD8_3084 PF00672 HAMP domain YPD8_3084 PF00512 His Kinase A (phospho-acceptor) domain YPD8_3084 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_3085 PF01926 50S ribosome-binding GTPase YPD8_3085 PF01018 GTP1/OBG YPD8_3086 PF00892 EamA-like transporter family YPD8_3087 PF00829 Ribosomal prokaryotic L21 protein YPD8_3088 PF00348 Polyprenyl synthetase YPD8_3090 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain YPD8_3090 PF00056 lactate/malate dehydrogenase, NAD binding domain YPD8_3091 PF01316 Arginine repressor, DNA binding domain YPD8_3091 PF02863 Arginine repressor, C-terminal domain YPD8_3092 PF08245 Mur ligase middle domain YPD8_3092 PF02875 Mur ligase family, glutamate ligase domain YPD8_3092 PF01225 Mur ligase family, catalytic domain YPD8_3093 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain YPD8_3094 PF00719 Inorganic pyrophosphatase YPD8_3095 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like YPD8_3096 PF04357 TamB, inner membrane protein subunit of TAM complex YPD8_3097 PF01103 Surface antigen YPD8_3097 PF07244 Surface antigen variable number repeat YPD8_3097 PF17243 POTRA domain TamA domain 1 YPD8_3098 PF01625 Peptide methionine sulfoxide reductase YPD8_3101 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) YPD8_3102 PF00459 Inositol monophosphatase family YPD8_3103 PF00149 Calcineurin-like phosphoesterase YPD8_3103 PF02872 5'-nucleotidase, C-terminal domain YPD8_3104 PF04405 Domain of Unknown function (DUF542) YPD8_3104 PF01814 Hemerythrin HHE cation binding domain YPD8_3105 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPD8_3105 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPD8_3106 PF08525 Opacity-associated protein A N-terminal motif YPD8_3106 PF04225 Opacity-associated protein A LysM-like domain YPD8_3108 PF01797 Transposase IS200 like YPD8_3109 PF01281 Ribosomal protein L9, N-terminal domain YPD8_3109 PF03948 Ribosomal protein L9, C-terminal domain YPD8_3110 PF01250 Ribosomal protein S6 YPD8_3111 PF00326 Prolyl oligopeptidase family YPD8_3112 PF00665 Integrase core domain YPD8_3112 PF02796 Helix-turn-helix domain of resolvase YPD8_3113 PF01695 IstB-like ATP binding protein YPD8_3114 PF13409 Glutathione S-transferase, N-terminal domain YPD8_3115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_3115 PF03466 LysR substrate binding domain YPD8_3116 PF17954 Quercetinase C-terminal cupin domain YPD8_3116 PF02678 Pirin YPD8_3117 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPD8_3118 PF04348 LppC putative lipoprotein YPD8_3119 PF02021 Uncharacterised protein family UPF0102 YPD8_3120 PF13580 SIS domain YPD8_3121 PF04972 BON domain YPD8_3122 PF00912 Transglycosylase YPD8_3124 PF18415 Histidine kinase receptor ArcB trans-membrane domain YPD8_3124 PF01627 Hpt domain YPD8_3124 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_3124 PF00989 PAS fold YPD8_3124 PF00512 His Kinase A (phospho-acceptor) domain YPD8_3124 PF00072 Response regulator receiver domain YPD8_3125 PF16199 Radical_SAM C-terminal domain YPD8_3125 PF04055 Radical SAM superfamily YPD8_3126 PF01493 GXGXG motif YPD8_3126 PF04898 Glutamate synthase central domain YPD8_3126 PF00310 Glutamine amidotransferases class-II YPD8_3126 PF01645 Conserved region in glutamate synthase YPD8_3127 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD8_3127 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPD8_3129 PF04386 Stringent starvation protein B YPD8_3130 PF02798 Glutathione S-transferase, N-terminal domain YPD8_3130 PF00043 Glutathione S-transferase, C-terminal domain YPD8_3131 PF00380 Ribosomal protein S9/S16 YPD8_3132 PF00572 Ribosomal protein L13 YPD8_3133 PF03969 AFG1-like ATPase YPD8_3134 PF06295 Protein of unknown function (DUF1043) YPD8_3135 PF00595 PDZ domain YPD8_3135 PF13180 PDZ domain YPD8_3136 PF01797 Transposase IS200 like YPD8_3137 PF13180 PDZ domain YPD8_3138 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPD8_3139 PF13466 STAS domain YPD8_3140 PF05494 MlaC protein YPD8_3141 PF02470 MlaD protein YPD8_3142 PF02405 Permease MlaE YPD8_3143 PF00005 ABC transporter YPD8_3144 PF01699 Sodium/calcium exchanger protein YPD8_3145 PF00571 CBS domain YPD8_3145 PF01380 SIS domain YPD8_3147 PF06835 Lipopolysaccharide-assembly, LptC-related YPD8_3148 PF03968 OstA-like protein YPD8_3149 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPD8_3149 PF00005 ABC transporter YPD8_3150 PF04552 Sigma-54, DNA binding domain YPD8_3150 PF04963 Sigma-54 factor, core binding domain YPD8_3150 PF00309 Sigma-54 factor, Activator interacting domain (AID) YPD8_3151 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPD8_3152 PF03668 P-loop ATPase protein family YPD8_3153 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPD8_3153 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPD8_3154 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain YPD8_3154 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain YPD8_3155 PF01042 Endoribonuclease L-PSP YPD8_3157 PF00356 Bacterial regulatory proteins, lacI family YPD8_3158 PF02378 Phosphotransferase system, EIIC YPD8_3158 PF00367 phosphotransferase system, EIIB YPD8_3159 PF11941 Domain of unknown function (DUF3459) YPD8_3159 PF00128 Alpha amylase, catalytic domain YPD8_3160 PF01272 Transcription elongation factor, GreA/GreB, C-term YPD8_3160 PF14760 Rnk N-terminus YPD8_3161 PF07361 Cytochrome b562 YPD8_3163 PF01523 Putative modulator of DNA gyrase YPD8_3164 PF04751 Protein of unknown function (DUF615) YPD8_3166 PF00171 Aldehyde dehydrogenase family YPD8_3167 PF00171 Aldehyde dehydrogenase family YPD8_3168 PF04632 Fusaric acid resistance protein family YPD8_3169 PF13533 Biotin-lipoyl like YPD8_3170 PF03466 LysR substrate binding domain YPD8_3170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_3174 PF18413 Neuraminidase-like domain YPD8_3174 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain YPD8_3175 PF12255 Insecticide toxin TcdB middle/C-terminal region YPD8_3175 PF03534 Salmonella virulence plasmid 65kDa B protein YPD8_3175 PF12256 Insecticide toxin TcdB middle/N-terminal region YPD8_3178 PF18807 Tripartite Tc toxins repeat YPD8_3178 PF05785 Rho-activating domain of cytotoxic necrotizing factor YPD8_3179 PF14431 YwqJ-like deaminase YPD8_3179 PF18807 Tripartite Tc toxins repeat YPD8_3180 PF01523 Putative modulator of DNA gyrase YPD8_3181 PF00795 Carbon-nitrogen hydrolase YPD8_3182 PF13116 Protein of unknown function YPD8_3182 PF13502 AsmA-like C-terminal region YPD8_3183 PF13116 Protein of unknown function YPD8_3183 PF13502 AsmA-like C-terminal region YPD8_3184 PF00575 S1 RNA binding domain YPD8_3184 PF10150 Ribonuclease E/G family YPD8_3185 PF02545 Maf-like protein YPD8_3186 PF04093 rod shape-determining protein MreD YPD8_3187 PF04085 rod shape-determining protein MreC YPD8_3189 PF00563 EAL domain YPD8_3189 PF17157 Gammaproteobacterial periplasmic sensor domain YPD8_3189 PF00990 Diguanylate cyclase, GGDEF domain YPD8_3190 PF00107 Zinc-binding dehydrogenase YPD8_3190 PF08240 Alcohol dehydrogenase GroES-like domain YPD8_3191 PF00174 Oxidoreductase molybdopterin binding domain YPD8_3192 PF01794 Ferric reductase like transmembrane component YPD8_3193 PF01220 Dehydroquinase class II YPD8_3194 PF00364 Biotin-requiring enzyme YPD8_3195 PF02785 Biotin carboxylase C-terminal domain YPD8_3195 PF00289 Biotin carboxylase, N-terminal domain YPD8_3195 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPD8_3196 PF00474 Sodium:solute symporter family YPD8_3198 PF01207 Dihydrouridine synthase (Dus) YPD8_3201 PF07690 Major Facilitator Superfamily YPD8_3202 PF02627 Carboxymuconolactone decarboxylase family YPD8_3203 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase YPD8_3203 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPD8_3204 PF00753 Metallo-beta-lactamase superfamily YPD8_3205 PF05433 Glycine zipper 2TM domain YPD8_3206 PF01797 Transposase IS200 like YPD8_3209 PF02798 Glutathione S-transferase, N-terminal domain YPD8_3210 PF00571 CBS domain YPD8_3210 PF01380 SIS domain YPD8_3211 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPD8_3211 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD8_3213 PF02653 Branched-chain amino acid transport system / permease component YPD8_3214 PF00005 ABC transporter YPD8_3216 PF03279 Bacterial lipid A biosynthesis acyltransferase YPD8_3218 PF00999 Sodium/hydrogen exchanger family YPD8_3219 PF00860 Permease family YPD8_3220 PF00005 ABC transporter YPD8_3221 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_3222 PF00296 Luciferase-like monooxygenase YPD8_3223 PF09084 NMT1/THI5 like YPD8_3224 PF03358 NADPH-dependent FMN reductase YPD8_3226 PF00294 pfkB family carbohydrate kinase YPD8_3227 PF05025 RbsD / FucU transport protein family YPD8_3228 PF02311 AraC-like ligand binding domain YPD8_3228 PF12833 Helix-turn-helix domain YPD8_3229 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPD8_3229 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPD8_3232 PF03527 RHS protein YPD8_3232 PF05593 RHS Repeat YPD8_3234 PF04717 Type VI secretion system, phage-baseplate injector YPD8_3237 PF14220 Domain of unknown function (DUF4329) YPD8_3237 PF05593 RHS Repeat YPD8_3237 PF03527 RHS protein YPD8_3240 PF04717 Type VI secretion system, phage-baseplate injector YPD8_3248 PF17871 AAA lid domain YPD8_3248 PF07724 AAA domain (Cdc48 subfamily) YPD8_3248 PF10431 C-terminal, D2-small domain, of ClpB protein YPD8_3248 PF00004 ATPase family associated with various cellular activities (AAA) YPD8_3256 PF13276 HTH-like domain YPD8_3256 PF00665 Integrase core domain YPD8_3256 PF13333 Integrase core domain YPD8_3260 PF05638 Type VI secretion system effector, Hcp YPD8_3261 PF07148 Maltose operon periplasmic protein precursor (MalM) YPD8_3262 PF02264 LamB porin YPD8_3263 PF17912 MalK OB fold domain YPD8_3263 PF00005 ABC transporter YPD8_3264 PF01547 Bacterial extracellular solute-binding protein YPD8_3265 PF14785 Maltose transport system permease protein MalF P2 domain YPD8_3265 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_3266 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_3267 PF06146 Phosphate-starvation-inducible E YPD8_3270 PF00696 Amino acid kinase family YPD8_3270 PF01842 ACT domain YPD8_3271 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPD8_3271 PF17287 POTRA domain YPD8_3271 PF08479 POTRA domain, ShlB-type YPD8_3272 PF17287 POTRA domain YPD8_3272 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPD8_3272 PF08479 POTRA domain, ShlB-type YPD8_3273 PF05860 haemagglutination activity domain YPD8_3273 PF13332 Hemagglutinin repeat YPD8_3274 PF00809 Pterin binding enzyme YPD8_3274 PF02965 Vitamin B12 dependent methionine synthase, activation domain YPD8_3274 PF02607 B12 binding domain YPD8_3274 PF02574 Homocysteine S-methyltransferase YPD8_3274 PF02310 B12 binding domain YPD8_3275 PF01614 Bacterial transcriptional regulator YPD8_3275 PF09339 IclR helix-turn-helix domain YPD8_3276 PF01614 Bacterial transcriptional regulator YPD8_3276 PF09339 IclR helix-turn-helix domain YPD8_3277 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) YPD8_3278 PF00463 Isocitrate lyase family YPD8_3279 PF01274 Malate synthase YPD8_3280 PF04204 Homoserine O-succinyltransferase YPD8_3281 PF02142 MGS-like domain YPD8_3281 PF01808 AICARFT/IMPCHase bienzyme YPD8_3282 PF01808 AICARFT/IMPCHase bienzyme YPD8_3282 PF02142 MGS-like domain YPD8_3283 PF02844 Phosphoribosylglycinamide synthetase, N domain YPD8_3283 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YPD8_3283 PF02843 Phosphoribosylglycinamide synthetase, C domain YPD8_3284 PF07356 Protein of unknown function (DUF1481) YPD8_3285 PF04222 Protein of unknown function (DUF416) YPD8_3286 PF04493 Endonuclease V YPD8_3287 PF01208 Uroporphyrinogen decarboxylase (URO-D) YPD8_3289 PF09297 NADH pyrophosphatase zinc ribbon domain YPD8_3289 PF00293 NUDIX domain YPD8_3290 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ YPD8_3291 PF01964 Radical SAM ThiC family YPD8_3291 PF13667 ThiC-associated domain YPD8_3292 PF02581 Thiamine monophosphate synthase YPD8_3293 PF00899 ThiF family YPD8_3294 PF05690 Thiazole biosynthesis protein ThiG YPD8_3295 PF06968 Biotin and Thiamin Synthesis associated domain YPD8_3295 PF04055 Radical SAM superfamily YPD8_3296 PF01797 Transposase IS200 like YPD8_3297 PF04998 RNA polymerase Rpb1, domain 5 YPD8_3297 PF00623 RNA polymerase Rpb1, domain 2 YPD8_3297 PF04983 RNA polymerase Rpb1, domain 3 YPD8_3297 PF04997 RNA polymerase Rpb1, domain 1 YPD8_3297 PF05000 RNA polymerase Rpb1, domain 4 YPD8_3298 PF04560 RNA polymerase Rpb2, domain 7 YPD8_3298 PF00562 RNA polymerase Rpb2, domain 6 YPD8_3298 PF10385 RNA polymerase beta subunit external 1 domain YPD8_3298 PF04563 RNA polymerase beta subunit YPD8_3298 PF04561 RNA polymerase Rpb2, domain 2 YPD8_3298 PF04565 RNA polymerase Rpb2, domain 3 YPD8_3299 PF00542 Ribosomal protein L7/L12 C-terminal domain YPD8_3299 PF16320 Ribosomal protein L7/L12 dimerisation domain YPD8_3300 PF00466 Ribosomal protein L10 YPD8_3301 PF00687 Ribosomal protein L1p/L10e family YPD8_3302 PF00298 Ribosomal protein L11, RNA binding domain YPD8_3302 PF03946 Ribosomal protein L11, N-terminal domain YPD8_3303 PF00467 KOW motif YPD8_3303 PF02357 Transcription termination factor nusG YPD8_3304 PF00584 SecE/Sec61-gamma subunits of protein translocation complex YPD8_3305 PF03143 Elongation factor Tu C-terminal domain YPD8_3305 PF00009 Elongation factor Tu GTP binding domain YPD8_3305 PF03144 Elongation factor Tu domain 2 YPD8_3306 PF01695 IstB-like ATP binding protein YPD8_3307 PF00665 Integrase core domain YPD8_3307 PF02796 Helix-turn-helix domain of resolvase YPD8_3308 PF13673 Acetyltransferase (GNAT) domain YPD8_3309 PF00485 Phosphoribulokinase / Uridine kinase family YPD8_3310 PF08279 HTH domain YPD8_3310 PF02237 Biotin protein ligase C terminal domain YPD8_3310 PF03099 Biotin/lipoate A/B protein ligase family YPD8_3311 PF01565 FAD binding domain YPD8_3311 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain YPD8_3312 PF02386 Cation transport protein YPD8_3313 PF09186 Domain of unknown function (DUF1949) YPD8_3313 PF01205 Uncharacterized protein family UPF0029 YPD8_3314 PF01797 Transposase IS200 like YPD8_3315 PF00557 Metallopeptidase family M24 YPD8_3316 PF00378 Enoyl-CoA hydratase/isomerase YPD8_3316 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPD8_3316 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPD8_3317 PF02803 Thiolase, C-terminal domain YPD8_3317 PF00108 Thiolase, N-terminal domain YPD8_3318 PF00175 Oxidoreductase NAD-binding domain YPD8_3318 PF00970 Oxidoreductase FAD-binding domain YPD8_3319 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YPD8_3320 PF02357 Transcription termination factor nusG YPD8_3321 PF00490 Delta-aminolevulinic acid dehydratase YPD8_3322 PF01026 TatD related DNase YPD8_3323 PF01695 IstB-like ATP binding protein YPD8_3324 PF00665 Integrase core domain YPD8_3324 PF02796 Helix-turn-helix domain of resolvase YPD8_3325 PF01026 TatD related DNase YPD8_3326 PF00902 Sec-independent protein translocase protein (TatC) YPD8_3328 PF03109 ABC1 family YPD8_3329 PF02036 SCP-2 sterol transfer family YPD8_3330 PF01209 ubiE/COQ5 methyltransferase family YPD8_3331 PF02646 RmuC family YPD8_3332 PF09335 SNARE associated Golgi protein YPD8_3333 PF02554 Carbon starvation protein CstA YPD8_3333 PF13722 5TM C-terminal transporter carbon starvation CstA YPD8_3335 PF01048 Phosphorylase superfamily YPD8_3336 PF01738 Dienelactone hydrolase family YPD8_3337 PF08267 Cobalamin-independent synthase, N-terminal domain YPD8_3337 PF01717 Cobalamin-independent synthase, Catalytic domain YPD8_3338 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_3338 PF03466 LysR substrate binding domain YPD8_3339 PF03547 Membrane transport protein YPD8_3340 PF03009 Glycerophosphoryl diester phosphodiesterase family YPD8_3341 PF00005 ABC transporter YPD8_3341 PF17912 MalK OB fold domain YPD8_3342 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_3343 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_3344 PF13416 Bacterial extracellular solute-binding protein YPD8_3352 PF00005 ABC transporter YPD8_3353 PF00005 ABC transporter YPD8_3353 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPD8_3354 PF02653 Branched-chain amino acid transport system / permease component YPD8_3354 PF11862 Domain of unknown function (DUF3382) YPD8_3355 PF02653 Branched-chain amino acid transport system / permease component YPD8_3356 PF13458 Periplasmic binding protein YPD8_3357 PF12568 Acetyltransferase (GNAT) domain, PanZ YPD8_3358 PF01797 Transposase IS200 like YPD8_3359 PF00140 Sigma-70 factor, region 1.2 YPD8_3359 PF04542 Sigma-70 region 2 YPD8_3359 PF04545 Sigma-70, region 4 YPD8_3360 PF02687 FtsX-like permease family YPD8_3360 PF18075 FtsX extracellular domain YPD8_3361 PF00005 ABC transporter YPD8_3362 PF02881 SRP54-type protein, helical bundle domain YPD8_3362 PF00448 SRP54-type protein, GTPase domain YPD8_3362 PF00448 SRP54-type protein, GTPase domain YPD8_3362 PF02881 SRP54-type protein, helical bundle domain YPD8_3366 PF07947 YhhN family YPD8_3367 PF00403 Heavy-metal-associated domain YPD8_3368 PF01206 Sulfurtransferase TusA YPD8_3369 PF02592 Putative vitamin uptake transporter YPD8_3370 PF08786 DcrB YPD8_3371 PF13183 4Fe-4S dicluster domain YPD8_3371 PF02754 Cysteine-rich domain YPD8_3372 PF00890 FAD binding domain YPD8_3373 PF01266 FAD dependent oxidoreductase YPD8_3373 PF04324 BFD-like [2Fe-2S] binding domain YPD8_3374 PF03009 Glycerophosphoryl diester phosphodiesterase family YPD8_3377 PF12146 Serine aminopeptidase, S33 YPD8_3378 PF01810 LysE type translocator YPD8_3379 PF01810 LysE type translocator YPD8_3380 PF16124 RecQ zinc-binding YPD8_3380 PF00570 HRDC domain YPD8_3380 PF00270 DEAD/DEAH box helicase YPD8_3380 PF00271 Helicase conserved C-terminal domain YPD8_3380 PF09382 RQC domain YPD8_3381 PF02253 Phospholipase A1 YPD8_3382 PF03061 Thioesterase superfamily YPD8_3383 PF00892 EamA-like transporter family YPD8_3384 PF01544 CorA-like Mg2+ transporter protein YPD8_3385 PF09370 Phosphoenolpyruvate hydrolase-like YPD8_3388 PF13361 UvrD-like helicase C-terminal domain YPD8_3388 PF00580 UvrD/REP helicase N-terminal domain YPD8_3389 PF13419 Haloacid dehalogenase-like hydrolase YPD8_3390 PF00589 Phage integrase family YPD8_3390 PF02899 Phage integrase, N-terminal SAM-like domain YPD8_3391 PF04340 Protein of unknown function, DUF484 YPD8_3392 PF01678 Diaminopimelate epimerase YPD8_3393 PF01491 Frataxin-like domain YPD8_3394 PF12633 Adenylate cyclase NT domain YPD8_3394 PF01295 Adenylate cyclase, class-I YPD8_3395 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain YPD8_3395 PF03900 Porphobilinogen deaminase, C-terminal domain YPD8_3396 PF02602 Uroporphyrinogen-III synthase HemD YPD8_3397 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase YPD8_3398 PF07219 HemY protein N-terminus YPD8_3398 PF07719 Tetratricopeptide repeat YPD8_3399 PF01797 Transposase IS200 like YPD8_3400 PF00324 Amino acid permease YPD8_3401 PF03808 Glycosyl transferase WecB/TagA/CpsF family YPD8_3402 PF06899 WzyE protein, O-antigen assembly polymerase YPD8_3403 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 YPD8_3404 PF01943 Polysaccharide biosynthesis protein YPD8_3405 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPD8_3407 PF00483 Nucleotidyl transferase YPD8_3408 PF16363 GDP-mannose 4,6 dehydratase YPD8_3409 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPD8_3409 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPD8_3409 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPD8_3410 PF02350 UDP-N-acetylglucosamine 2-epimerase YPD8_3411 PF02706 Chain length determinant protein YPD8_3412 PF00953 Glycosyl transferase family 4 YPD8_3413 PF07497 Rho termination factor, RNA-binding domain YPD8_3413 PF07498 Rho termination factor, N-terminal domain YPD8_3413 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPD8_3414 PF00085 Thioredoxin YPD8_3415 PF00271 Helicase conserved C-terminal domain YPD8_3415 PF00270 DEAD/DEAH box helicase YPD8_3416 PF02541 Ppx/GppA phosphatase family YPD8_3417 PF13361 UvrD-like helicase C-terminal domain YPD8_3417 PF00580 UvrD/REP helicase N-terminal domain YPD8_3420 PF00872 Transposase, Mutator family YPD8_3422 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD8_3422 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD8_3423 PF13953 PapC C-terminal domain YPD8_3423 PF13954 PapC N-terminal domain YPD8_3423 PF00577 Outer membrane usher protein YPD8_3424 PF00577 Outer membrane usher protein YPD8_3424 PF13954 PapC N-terminal domain YPD8_3424 PF13953 PapC C-terminal domain YPD8_3426 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD8_3426 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD8_3428 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain YPD8_3428 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain YPD8_3429 PF03466 LysR substrate binding domain YPD8_3429 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_3434 PF00291 Pyridoxal-phosphate dependent enzyme YPD8_3434 PF00585 C-terminal regulatory domain of Threonine dehydratase YPD8_3435 PF00920 Dehydratase family YPD8_3436 PF01063 Amino-transferase class IV YPD8_3437 PF00205 Thiamine pyrophosphate enzyme, central domain YPD8_3437 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPD8_3437 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPD8_3438 PF01078 Magnesium chelatase, subunit ChlI YPD8_3438 PF13335 Magnesium chelatase, subunit ChlI C-terminal YPD8_3439 PF04219 Protein of unknown function, DUF YPD8_3440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_3440 PF03466 LysR substrate binding domain YPD8_3441 PF02653 Branched-chain amino acid transport system / permease component YPD8_3442 PF02653 Branched-chain amino acid transport system / permease component YPD8_3443 PF00005 ABC transporter YPD8_3444 PF13407 Periplasmic binding protein domain YPD8_3445 PF01177 Asp/Glu/Hydantoin racemase YPD8_3446 PF00593 TonB dependent receptor YPD8_3446 PF07715 TonB-dependent Receptor Plug Domain YPD8_3447 PF05958 tRNA (Uracil-5-)-methyltransferase YPD8_3448 PF07226 Protein of unknown function (DUF1422) YPD8_3449 PF00440 Bacterial regulatory proteins, tetR family YPD8_3450 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD8_3450 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPD8_3451 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD8_3451 PF03466 LysR substrate binding domain YPD8_3452 PF08534 Redoxin YPD8_3452 PF00462 Glutaredoxin YPD8_3453 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD8_3453 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPD8_3454 PF03544 Gram-negative bacterial TonB protein C-terminal YPD8_3455 PF00529 HlyD membrane-fusion protein of T1SS YPD8_3456 PF00664 ABC transporter transmembrane region YPD8_3456 PF00005 ABC transporter YPD8_3458 PF07715 TonB-dependent Receptor Plug Domain YPD8_3458 PF00593 TonB dependent receptor YPD8_3459 PF14698 Argininosuccinate lyase C-terminal YPD8_3459 PF00206 Lyase YPD8_3460 PF00696 Amino acid kinase family YPD8_3461 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPD8_3461 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPD8_3462 PF01546 Peptidase family M20/M25/M40 YPD8_3462 PF07687 Peptidase dimerisation domain YPD8_3463 PF00311 Phosphoenolpyruvate carboxylase YPD8_3465 PF13276 HTH-like domain YPD8_3465 PF13333 Integrase core domain YPD8_3465 PF00665 Integrase core domain YPD8_3467 PF16901 C-terminal domain of alpha-glycerophosphate oxidase YPD8_3467 PF01266 FAD dependent oxidoreductase YPD8_3468 PF00343 Carbohydrate phosphorylase YPD8_3469 PF00534 Glycosyl transferases group 1 YPD8_3469 PF08323 Starch synthase catalytic domain YPD8_3470 PF00483 Nucleotidyl transferase YPD8_3471 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPD8_3471 PF00128 Alpha amylase, catalytic domain YPD8_3471 PF18390 Glycogen debranching enzyme C-terminal domain YPD8_3472 PF00128 Alpha amylase, catalytic domain YPD8_3472 PF02806 Alpha amylase, C-terminal all-beta domain YPD8_3472 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPD8_3473 PF02806 Alpha amylase, C-terminal all-beta domain YPD8_3473 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPD8_3473 PF00128 Alpha amylase, catalytic domain YPD8_3474 PF06580 Histidine kinase YPD8_3474 PF07694 5TMR of 5TMR-LYT YPD8_3475 PF09134 Invasin, domain 3 YPD8_3475 PF02369 Bacterial Ig-like domain (group 1) YPD8_3475 PF11924 Inverse autotransporter, beta-domain YPD8_3475 PF07979 Intimin C-type lectin domain YPD8_3476 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPD8_3476 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPD8_3477 PF01914 MarC family integral membrane protein YPD8_3479 PF01202 Shikimate kinase YPD8_3480 PF02447 GntP family permease YPD8_3481 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPD8_3481 PF00356 Bacterial regulatory proteins, lacI family YPD8_3482 PF02678 Pirin YPD8_3482 PF17954 Quercetinase C-terminal cupin domain YPD8_3483 PF00486 Transcriptional regulatory protein, C terminal YPD8_3483 PF00072 Response regulator receiver domain YPD8_3485 PF01116 Fructose-bisphosphate aldolase class-II YPD8_3487 PF13407 Periplasmic binding protein domain YPD8_3488 PF02653 Branched-chain amino acid transport system / permease component YPD8_3489 PF00005 ABC transporter YPD8_3490 PF00512 His Kinase A (phospho-acceptor) domain YPD8_3490 PF08448 PAS fold YPD8_3490 PF13188 PAS domain YPD8_3490 PF00072 Response regulator receiver domain YPD8_3490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_3492 PF01384 Phosphate transporter family YPD8_3493 PF01797 Transposase IS200 like YPD8_3494 PF10625 Universal stress protein B (UspB) YPD8_3495 PF00582 Universal stress protein family YPD8_3496 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YPD8_3496 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YPD8_3497 PF08548 Peptidase M10 serralysin C terminal YPD8_3497 PF00413 Matrixin YPD8_3497 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) YPD8_3498 PF04445 Putative SAM-dependent methyltransferase YPD8_3499 PF01432 Peptidase family M3 YPD8_3500 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ YPD8_3501 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD8_3501 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPD8_3502 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPD8_3502 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD8_3503 PF17853 GGDEF-like domain YPD8_3503 PF13556 PucR C-terminal helix-turn-helix domain YPD8_3503 PF05651 Putative sugar diacid recognition YPD8_3504 PF02447 GntP family permease YPD8_3505 PF02595 Glycerate kinase family YPD8_3511 PF03631 Virulence factor BrkB YPD8_3512 PF03631 Virulence factor BrkB YPD8_3513 PF02611 CDP-diacylglycerol pyrophosphatase YPD8_3514 PF05170 AsmA family YPD8_3515 PF00563 EAL domain YPD8_3516 PF00294 pfkB family carbohydrate kinase YPD8_3517 PF00675 Insulinase (Peptidase family M16) YPD8_3517 PF05193 Peptidase M16 inactive domain YPD8_3518 PF00375 Sodium:dicarboxylate symporter family YPD8_3520 PF06917 Periplasmic pectate lyase YPD8_3521 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPD8_3522 PF17154 Gammaproteobacterial periplasmic sensor domain YPD8_3522 PF00672 HAMP domain YPD8_3522 PF00990 Diguanylate cyclase, GGDEF domain YPD8_3522 PF00563 EAL domain YPD8_3523 PF01270 Glycosyl hydrolases family 8 YPD8_3524 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPD8_3524 PF00005 ABC transporter YPD8_3525 PF00005 ABC transporter YPD8_3525 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPD8_3526 PF12911 N-terminal TM domain of oligopeptide transport permease C YPD8_3526 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_3527 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_3528 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPD8_3529 PF08479 POTRA domain, ShlB-type YPD8_3529 PF17287 POTRA domain YPD8_3529 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPD8_3530 PF04829 Pre-toxin domain with VENN motif YPD8_3530 PF05860 haemagglutination activity domain YPD8_3530 PF13332 Hemagglutinin repeat YPD8_3530 PF05594 Haemagluttinin repeat YPD8_3531 PF07690 Major Facilitator Superfamily YPD8_3532 PF07730 Histidine kinase YPD8_3532 PF05231 MASE1 YPD8_3532 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_3533 PF01695 IstB-like ATP binding protein YPD8_3534 PF00665 Integrase core domain YPD8_3534 PF02796 Helix-turn-helix domain of resolvase YPD8_3535 PF05231 MASE1 YPD8_3535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_3535 PF07730 Histidine kinase YPD8_3536 PF00196 Bacterial regulatory proteins, luxR family YPD8_3536 PF00072 Response regulator receiver domain YPD8_3537 PF08019 Phosphoethanolamine transferase EptA/EptB YPD8_3537 PF00884 Sulfatase YPD8_3538 PF12146 Serine aminopeptidase, S33 YPD8_3539 PF00324 Amino acid permease YPD8_3540 PF00221 Aromatic amino acid lyase YPD8_3541 PF17391 Urocanase N-terminal domain YPD8_3541 PF17392 Urocanase C-terminal domain YPD8_3541 PF01175 Urocanase Rossmann-like domain YPD8_3542 PF00291 Pyridoxal-phosphate dependent enzyme YPD8_3543 PF00156 Phosphoribosyl transferase domain YPD8_3546 PF01497 Periplasmic binding protein YPD8_3547 PF01032 FecCD transport family YPD8_3548 PF01032 FecCD transport family YPD8_3549 PF00005 ABC transporter YPD8_3553 PF13356 Arm DNA-binding domain YPD8_3553 PF14659 Phage integrase, N-terminal SAM-like domain YPD8_3553 PF00589 Phage integrase family YPD8_3554 PF12833 Helix-turn-helix domain YPD8_3555 PF02653 Branched-chain amino acid transport system / permease component YPD8_3556 PF00005 ABC transporter YPD8_3557 PF00005 ABC transporter YPD8_3558 PF13407 Periplasmic binding protein domain YPD8_3560 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPD8_3560 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD8_3562 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD8_3562 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD8_3563 PF13953 PapC C-terminal domain YPD8_3563 PF13954 PapC N-terminal domain YPD8_3563 PF00577 Outer membrane usher protein YPD8_3564 PF13954 PapC N-terminal domain YPD8_3564 PF13953 PapC C-terminal domain YPD8_3564 PF00577 Outer membrane usher protein YPD8_3565 PF00419 Fimbrial protein YPD8_3566 PF01757 Acyltransferase family YPD8_3568 PF13276 HTH-like domain YPD8_3568 PF13333 Integrase core domain YPD8_3568 PF00665 Integrase core domain YPD8_3569 PF07690 Major Facilitator Superfamily YPD8_3572 PF01526 Tn3 transposase DDE domain YPD8_3572 PF13700 Domain of unknown function (DUF4158) YPD8_3573 PF09106 Elongation factor SelB, winged helix YPD8_3573 PF09107 Elongation factor SelB, winged helix YPD8_3573 PF00009 Elongation factor Tu GTP binding domain YPD8_3573 PF03144 Elongation factor Tu domain 2 YPD8_3574 PF12390 Selenocysteine synthase N terminal YPD8_3574 PF03841 L-seryl-tRNA selenium transferase YPD8_3575 PF04216 Protein involved in formate dehydrogenase formation YPD8_3576 PF01292 Prokaryotic cytochrome b561 YPD8_3577 PF13247 4Fe-4S dicluster domain YPD8_3577 PF09163 Formate dehydrogenase N, transmembrane YPD8_3578 PF00384 Molybdopterin oxidoreductase YPD8_3578 PF01568 Molydopterin dinucleotide binding domain YPD8_3578 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPD8_3579 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPD8_3579 PF00384 Molybdopterin oxidoreductase YPD8_3579 PF01568 Molydopterin dinucleotide binding domain YPD8_3580 PF02634 FdhD/NarQ family YPD8_3581 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPD8_3581 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPD8_3582 PF02203 Tar ligand binding domain homologue YPD8_3582 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPD8_3582 PF00672 HAMP domain YPD8_3585 PF10928 Protein of unknown function (DUF2810) YPD8_3586 PF05068 Mannitol repressor YPD8_3587 PF08125 Mannitol dehydrogenase C-terminal domain YPD8_3587 PF01232 Mannitol dehydrogenase Rossmann domain YPD8_3588 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPD8_3588 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPD8_3588 PF02378 Phosphotransferase system, EIIC YPD8_3589 PF11254 Protein of unknown function (DUF3053) YPD8_3590 PF02092 Glycyl-tRNA synthetase beta subunit YPD8_3590 PF05746 DALR anticodon binding domain YPD8_3591 PF02091 Glycyl-tRNA synthetase alpha subunit YPD8_3592 PF03352 Methyladenine glycosylase YPD8_3594 PF00691 OmpA family YPD8_3594 PF13488 Glycine zipper YPD8_3596 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPD8_3596 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPD8_3597 PF00128 Alpha amylase, catalytic domain YPD8_3599 PF00155 Aminotransferase class I and II YPD8_3600 PF02080 TrkA-C domain YPD8_3600 PF06826 Predicted Permease Membrane Region YPD8_3601 PF06826 Predicted Permease Membrane Region YPD8_3601 PF02080 TrkA-C domain YPD8_3602 PF00011 Hsp20/alpha crystallin family YPD8_3603 PF00011 Hsp20/alpha crystallin family YPD8_3604 PF07119 Protein of unknown function (DUF1375) YPD8_3605 PF07676 WD40-like Beta Propeller Repeat YPD8_3605 PF12566 Protein of unknown function (DUF3748) YPD8_3606 PF07676 WD40-like Beta Propeller Repeat YPD8_3606 PF12566 Protein of unknown function (DUF3748) YPD8_3607 PF00291 Pyridoxal-phosphate dependent enzyme YPD8_3607 PF13291 ACT domain YPD8_3608 PF02423 Ornithine cyclodeaminase/mu-crystallin family YPD8_3610 PF00665 Integrase core domain YPD8_3610 PF13276 HTH-like domain YPD8_3610 PF13333 Integrase core domain YPD8_3612 PF01751 Toprim domain YPD8_3612 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD8_3612 PF00986 DNA gyrase B subunit, carboxyl terminus YPD8_3612 PF18053 DNA gyrase B subunit insert domain YPD8_3612 PF00204 DNA gyrase B YPD8_3613 PF02463 RecF/RecN/SMC N terminal domain YPD8_3614 PF00712 DNA polymerase III beta subunit, N-terminal domain YPD8_3614 PF02767 DNA polymerase III beta subunit, central domain YPD8_3614 PF02768 DNA polymerase III beta subunit, C-terminal domain YPD8_3615 PF11638 DnaA N-terminal domain YPD8_3615 PF08299 Bacterial dnaA protein helix-turn-helix YPD8_3615 PF00308 Bacterial dnaA protein YPD8_3616 PF02096 60Kd inner membrane protein YPD8_3616 PF14849 YidC periplasmic domain YPD8_3617 PF01926 50S ribosome-binding GTPase YPD8_3617 PF12631 MnmE helical domain YPD8_3617 PF10396 GTP-binding protein TrmE N-terminus YPD8_3618 PF12241 Trans-2-enoyl-CoA reductase catalytic region YPD8_3618 PF07055 Enoyl reductase FAD binding domain YPD8_3618 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase YPD8_3620 PF00860 Permease family YPD8_3621 PF13419 Haloacid dehalogenase-like hydrolase YPD8_3622 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_3623 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_3624 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD8_3626 PF01895 PhoU domain YPD8_3627 PF00005 ABC transporter YPD8_3628 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_3629 PF00528 Binding-protein-dependent transport system inner membrane component YPD8_3630 PF12849 PBP superfamily domain YPD8_3631 PF01380 SIS domain YPD8_3632 PF12804 MobA-like NTP transferase domain YPD8_3632 PF00132 Bacterial transferase hexapeptide (six repeats) YPD8_3633 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain YPD8_3633 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain YPD8_3634 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPD8_3634 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPD8_3635 PF00231 ATP synthase YPD8_3636 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPD8_3636 PF00306 ATP synthase alpha/beta chain, C terminal domain YPD8_3636 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPD8_3637 PF00213 ATP synthase delta (OSCP) subunit YPD8_3638 PF00430 ATP synthase B/B' CF(0) YPD8_3639 PF00119 ATP synthase A chain YPD8_3640 PF03899 ATP synthase I chain YPD8_3641 PF02527 rRNA small subunit methyltransferase G YPD8_3642 PF13932 GidA associated domain YPD8_3642 PF01134 Glucose inhibited division protein A YPD8_pCD0001 PF13683 Integrase core domain YPD8_pCD0001 PF13276 HTH-like domain YPD8_pCD0002 PF05932 Tir chaperone protein (CesT) family YPD8_pCD0003 PF03545 Yersinia virulence determinant (YopE) YPD8_pCD0003 PF09020 YopE, N terminal YPD8_pCD0005 PF02195 ParB-like nuclease domain YPD8_pCD0005 PF18090 Centromere-binding protein HTH domain YPD8_pCD0006 PF13614 AAA domain YPD8_pCD0007 PF00665 Integrase core domain YPD8_pCD0007 PF13276 HTH-like domain YPD8_pCD0007 PF13333 Integrase core domain YPD8_pCD0009 PF05818 Enterobacterial TraT complement resistance protein YPD8_pCD0011 PF03543 Yersinia/Haemophilus virulence surface antigen YPD8_pCD0012 PF00872 Transposase, Mutator family YPD8_pCD0013 PF03543 Yersinia/Haemophilus virulence surface antigen YPD8_pCD0014 PF05932 Tir chaperone protein (CesT) family YPD8_pCD0017 PF12468 Type III secretion system leucine rich repeat protein YPD8_pCD0018 PF13610 DDE domain YPD8_pCD0019 PF05844 YopD protein YPD8_pCD0020 PF04888 Secretion system effector C (SseC) like family YPD8_pCD0021 PF07720 Tetratricopeptide repeat YPD8_pCD0022 PF04792 V antigen (LcrV) protein YPD8_pCD0023 PF09621 Type III secretion system regulator (LcrR) YPD8_pCD0024 PF00771 FHIPEP family YPD8_pCD0026 PF09474 Type III secretion system YscX (type_III_YscX) YPD8_pCD0028 PF07201 HrpJ-like domain YPD8_pCD0029 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPD8_pCD0029 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPD8_pCD0029 PF18269 T3SS EscN ATPase C-terminal domain YPD8_pCD0030 PF07321 Type III secretion protein YscO YPD8_pCD0031 PF02120 Flagellar hook-length control protein FliK YPD8_pCD0032 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPD8_pCD0033 PF00813 FliP family YPD8_pCD0034 PF01311 Bacterial export proteins, family 1 YPD8_pCD0035 PF01312 FlhB HrpN YscU SpaS Family YPD8_pCD0037 PF12833 Helix-turn-helix domain YPD8_pCD0037 PF02311 AraC-like ligand binding domain YPD8_pCD0038 PF05932 Tir chaperone protein (CesT) family YPD8_pCD0041 PF16697 Inner membrane component of T3SS, cytoplasmic domain YPD8_pCD0041 PF16693 Inner membrane component of T3SS, periplasmic domain YPD8_pCD0042 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) YPD8_pCD0043 PF09025 YopR, type III needle-polymerisation regulator YPD8_pCD0044 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI YPD8_pCD0045 PF01514 Secretory protein of YscJ/FliF family YPD8_pCD0046 PF06578 YOP proteins translocation protein K (YscK) YPD8_pCD0047 PF02108 Flagellar assembly protein FliH YPD8_pCD0048 PF09013 YopH, N-terminal YPD8_pCD0050 PF00102 Protein-tyrosine phosphatase YPD8_pCD0050 PF09013 YopH, N-terminal YPD8_pCD0051 PF13276 HTH-like domain YPD8_pCD0051 PF13683 Integrase core domain YPD8_pCD0053 PF00069 Protein kinase domain YPD8_pCD0053 PF09632 Rac1-binding domain YPD8_pCD0055 PF02387 IncFII RepA protein family YPD8_pCD0058 PF07057 DNA helicase TraI YPD8_pCD0058 PF18272 single-stranded DNA binding TraI N-terminal subdomain YPD8_pCD0058 PF18340 DNA relaxase TraI 2B/2B-like domain YPD8_pCD0058 PF08751 TrwC relaxase YPD8_pCD0059 PF05662 Coiled stalk of trimeric autotransporter adhesin YPD8_pCD0059 PF05658 Head domain of trimeric autotransporter adhesin YPD8_pCD0059 PF03895 YadA-like membrane anchor domain YPD8_pCD0061 PF01526 Tn3 transposase DDE domain YPD8_pCD0061 PF13700 Domain of unknown function (DUF4158) YPD8_pCD0062 PF00239 Resolvase, N terminal domain YPD8_pCD0062 PF02796 Helix-turn-helix domain of resolvase YPD8_pCD0065 PF13276 HTH-like domain YPD8_pCD0065 PF13683 Integrase core domain YPD8_pCD0067 PF01695 IstB-like ATP binding protein YPD8_pMT0001 PF02796 Helix-turn-helix domain of resolvase YPD8_pMT0001 PF00665 Integrase core domain YPD8_pMT0002 PF01695 IstB-like ATP binding protein YPD8_pMT0003 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YPD8_pMT0004 PF07484 Phage Tail Collar Domain YPD8_pMT0004 PF03335 Phage tail fibre repeat YPD8_pMT0004 PF08400 Prophage tail fibre N-terminal YPD8_pMT0004 PF03335 Phage tail fibre repeat YPD8_pMT0004 PF07484 Phage Tail Collar Domain YPD8_pMT0004 PF08400 Prophage tail fibre N-terminal YPD8_pMT0027 PF00664 ABC transporter transmembrane region YPD8_pMT0027 PF03412 Peptidase C39 family YPD8_pMT0027 PF00005 ABC transporter YPD8_pMT0028 PF17762 HTH domain found in ParB protein YPD8_pMT0028 PF02195 ParB-like nuclease domain YPD8_pMT0029 PF02195 ParB-like nuclease domain YPD8_pMT0029 PF17762 HTH domain found in ParB protein YPD8_pMT0030 PF00270 DEAD/DEAH box helicase YPD8_pMT0030 PF17191 RecG wedge domain YPD8_pMT0030 PF00271 Helicase conserved C-terminal domain YPD8_pMT0034 PF01797 Transposase IS200 like YPD8_pMT0041 PF01051 Initiator Replication protein YPD8_pMT0046 PF00154 recA bacterial DNA recombination protein YPD8_pMT0047 PF01367 5'-3' exonuclease, C-terminal SAM fold YPD8_pMT0047 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPD8_pMT0049 PF02796 Helix-turn-helix domain of resolvase YPD8_pMT0049 PF00665 Integrase core domain YPD8_pMT0050 PF01695 IstB-like ATP binding protein YPD8_pMT0054 PF02811 PHP domain YPD8_pMT0054 PF07733 Bacterial DNA polymerase III alpha NTPase domain YPD8_pMT0054 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YPD8_pMT0054 PF14579 Helix-hairpin-helix motif YPD8_pMT0056 PF11775 Cobalamin biosynthesis protein CobT VWA domain YPD8_pMT0056 PF06213 Cobalamin biosynthesis protein CobT YPD8_pMT0059 PF09255 Caf1 Capsule antigen YPD8_pMT0060 PF13953 PapC C-terminal domain YPD8_pMT0060 PF00577 Outer membrane usher protein YPD8_pMT0060 PF13954 PapC N-terminal domain YPD8_pMT0061 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD8_pMT0061 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD8_pMT0062 PF12833 Helix-turn-helix domain YPD8_pMT0062 PF06445 GyrI-like small molecule binding domain YPD8_pMT0063 PF00872 Transposase, Mutator family YPD8_pMT0064 PF01548 Transposase YPD8_pMT0064 PF02371 Transposase IS116/IS110/IS902 family YPD8_pMT0065 PF04754 Putative transposase, YhgA-like YPD8_pMT0066 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) YPD8_pMT0068 PF13091 PLD-like domain YPD8_pMT0069 PF04754 Putative transposase, YhgA-like YPD8_pMT0070 PF04754 Putative transposase, YhgA-like YPD8_pMT0071 PF00239 Resolvase, N terminal domain YPD8_pMT0071 PF02796 Helix-turn-helix domain of resolvase YPD8_pMT0072 PF13614 AAA domain YPD8_pMT0072 PF18607 ParA helix turn helix domain YPD8_pMT0073 PF13614 AAA domain YPD8_pMT0073 PF18607 ParA helix turn helix domain YPD8_pMT0074 PF08775 ParB family YPD8_pMT0074 PF02195 ParB-like nuclease domain YPD8_pMT0076 PF01555 DNA methylase YPD8_pMT0077 PF07128 Protein of unknown function (DUF1380) YPD8_pMT0080 PF02195 ParB-like nuclease domain YPD8_pPCP0001 PF00665 Integrase core domain YPD8_pPCP0001 PF02796 Helix-turn-helix domain of resolvase YPD8_pPCP0002 PF01695 IstB-like ATP binding protein YPD8_pPCP0007 PF01278 Omptin family YPD8_pPCP0009 PF05973 Phage derived protein Gp49-like (DUF891)