locus-tag class description CH61_1 PF07055 Enoyl reductase FAD binding domain CH61_1 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CH61_1 PF12241 Trans-2-enoyl-CoA reductase catalytic region CH61_10 PF02463 RecF/RecN/SMC N terminal domain CH61_100 PF02796 Helix-turn-helix domain of resolvase CH61_100 PF00665 Integrase core domain CH61_1005 PF08274 PhnA Zinc-Ribbon CH61_1005 PF03831 PhnA domain CH61_1007 PF04011 LemA family CH61_101 PF01695 IstB-like ATP binding protein CH61_1010 PF00005 ABC transporter CH61_1011 PF03379 CcmB protein CH61_1012 PF01578 Cytochrome C assembly protein CH61_1013 PF04995 Heme exporter protein D (CcmD) CH61_1014 PF03100 CcmE CH61_1015 PF01578 Cytochrome C assembly protein CH61_1015 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CH61_1016 PF08534 Redoxin CH61_1017 PF03918 Cytochrome C biogenesis protein CH61_1018 PF03918 Cytochrome C biogenesis protein CH61_1019 PF04333 MlaA lipoprotein CH61_102 PF05231 MASE1 CH61_102 PF07730 Histidine kinase CH61_102 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_1020 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CH61_1021 PF04175 Protein of unknown function (DUF406) CH61_1022 PF02803 Thiolase, C-terminal domain CH61_1022 PF00108 Thiolase, N-terminal domain CH61_1023 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH61_1023 PF00378 Enoyl-CoA hydratase/isomerase CH61_1023 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH61_1024 PF00300 Histidine phosphatase superfamily (branch 1) CH61_1025 PF01713 Smr domain CH61_1026 PF05175 Methyltransferase small domain CH61_1027 PF01264 Chorismate synthase CH61_1028 PF03411 Penicillin-insensitive murein endopeptidase CH61_1029 PF01925 Sulfite exporter TauE/SafE CH61_103 PF07690 Major Facilitator Superfamily CH61_1030 PF04315 Elongation factor P hydroxylase CH61_1031 PF08891 YfcL protein CH61_1032 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CH61_1032 PF01266 FAD dependent oxidoreductase CH61_1033 PF02801 Beta-ketoacyl synthase, C-terminal domain CH61_1033 PF00109 Beta-ketoacyl synthase, N-terminal domain CH61_1034 PF01177 Asp/Glu/Hydantoin racemase CH61_1035 PF00419 Fimbrial protein CH61_1037 PF00892 EamA-like transporter family CH61_1039 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH61_1039 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH61_1039 PF11890 Domain of unknown function (DUF3410) CH61_1040 PF01797 Transposase IS200 like CH61_1042 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH61_1042 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH61_1043 PF01416 tRNA pseudouridine synthase CH61_1044 PF09335 SNARE associated Golgi protein CH61_1045 PF01039 Carboxyl transferase domain CH61_1045 PF17848 Acetyl-coA carboxylase zinc finger domain CH61_1046 PF02875 Mur ligase family, glutamate ligase domain CH61_1046 PF08245 Mur ligase middle domain CH61_1047 PF05036 Sporulation related domain CH61_1048 PF02674 Colicin V production protein CH61_1049 PF00156 Phosphoribosyl transferase domain CH61_1050 PF02441 Flavoprotein CH61_1051 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH61_1052 PF00528 Binding-protein-dependent transport system inner membrane component CH61_1053 PF00528 Binding-protein-dependent transport system inner membrane component CH61_1054 PF00005 ABC transporter CH61_1055 PF08338 Domain of unknown function (DUF1731) CH61_1055 PF01370 NAD dependent epimerase/dehydratase family CH61_1057 PF12850 Calcineurin-like phosphoesterase superfamily domain CH61_1058 PF00293 NUDIX domain CH61_1059 PF03611 PTS system sugar-specific permease component CH61_106 PF05594 Haemagluttinin repeat CH61_106 PF13332 Hemagglutinin repeat CH61_106 PF05860 haemagglutination activity domain CH61_106 PF04829 Pre-toxin domain with VENN motif CH61_1060 PF00872 Transposase, Mutator family CH61_1061 PF00912 Transglycosylase CH61_1061 PF00905 Penicillin binding protein transpeptidase domain CH61_1061 PF06832 Penicillin-Binding Protein C-terminus Family CH61_1062 PF13693 Winged helix-turn-helix DNA-binding CH61_1067 PF05638 Type VI secretion system effector, Hcp CH61_107 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH61_107 PF17287 POTRA domain CH61_107 PF08479 POTRA domain, ShlB-type CH61_1070 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH61_1070 PF03212 Pertactin CH61_1070 PF13018 Extended Signal Peptide of Type V secretion system CH61_1070 PF03797 Autotransporter beta-domain CH61_1072 PF08007 Cupin superfamily protein CH61_1073 PF00872 Transposase, Mutator family CH61_1078 PF00248 Aldo/keto reductase family CH61_1079 PF00248 Aldo/keto reductase family CH61_1080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_1080 PF03466 LysR substrate binding domain CH61_1081 PF02796 Helix-turn-helix domain of resolvase CH61_1081 PF00665 Integrase core domain CH61_1083 PF01695 IstB-like ATP binding protein CH61_1086 PF00782 Dual specificity phosphatase, catalytic domain CH61_1087 PF12147 Putative methyltransferase CH61_1087 PF12146 Serine aminopeptidase, S33 CH61_1088 PF01553 Acyltransferase CH61_109 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH61_1090 PF01066 CDP-alcohol phosphatidyltransferase CH61_1097 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CH61_1097 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CH61_11 PF00204 DNA gyrase B CH61_11 PF01751 Toprim domain CH61_11 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_11 PF18053 DNA gyrase B subunit insert domain CH61_11 PF00986 DNA gyrase B subunit, carboxyl terminus CH61_110 PF00528 Binding-protein-dependent transport system inner membrane component CH61_1101 PF02769 AIR synthase related protein, C-terminal domain CH61_1101 PF00586 AIR synthase related protein, N-terminal domain CH61_1102 PF00551 Formyl transferase CH61_1103 PF13302 Acetyltransferase (GNAT) domain CH61_1106 PF00005 ABC transporter CH61_1107 PF00528 Binding-protein-dependent transport system inner membrane component CH61_1108 PF00528 Binding-protein-dependent transport system inner membrane component CH61_1109 PF02503 Polyphosphate kinase middle domain CH61_1109 PF13089 Polyphosphate kinase N-terminal domain CH61_1109 PF17941 Polyphosphate kinase C-terminal domain 1 CH61_1109 PF13090 Polyphosphate kinase C-terminal domain 2 CH61_111 PF12911 N-terminal TM domain of oligopeptide transport permease C CH61_111 PF00528 Binding-protein-dependent transport system inner membrane component CH61_1110 PF02541 Ppx/GppA phosphatase family CH61_1111 PF00571 CBS domain CH61_1111 PF01769 Divalent cation transporter CH61_1111 PF03448 MgtE intracellular N domain CH61_1112 PF00012 Hsp70 protein CH61_1113 PF00528 Binding-protein-dependent transport system inner membrane component CH61_1114 PF00528 Binding-protein-dependent transport system inner membrane component CH61_1116 PF00202 Aminotransferase class-III CH61_1117 PF00155 Aminotransferase class I and II CH61_1117 PF00392 Bacterial regulatory proteins, gntR family CH61_1118 PF08402 TOBE domain CH61_1118 PF00005 ABC transporter CH61_1119 PF13533 Biotin-lipoyl like CH61_112 PF00005 ABC transporter CH61_112 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH61_1120 PF00873 AcrB/AcrD/AcrF family CH61_1121 PF00873 AcrB/AcrD/AcrF family CH61_1122 PF07690 Major Facilitator Superfamily CH61_1123 PF00672 HAMP domain CH61_1123 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_1123 PF00512 His Kinase A (phospho-acceptor) domain CH61_1124 PF00072 Response regulator receiver domain CH61_1124 PF00486 Transcriptional regulatory protein, C terminal CH61_1125 PF07411 Domain of unknown function (DUF1508) CH61_1127 PF00781 Diacylglycerol kinase catalytic domain CH61_113 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH61_113 PF00005 ABC transporter CH61_1131 PF08543 Phosphomethylpyrimidine kinase CH61_1134 PF00872 Transposase, Mutator family CH61_114 PF01270 Glycosyl hydrolases family 8 CH61_1140 PF05638 Type VI secretion system effector, Hcp CH61_1141 PF01797 Transposase IS200 like CH61_1142 PF00958 GMP synthase C terminal domain CH61_1142 PF02540 NAD synthase CH61_1142 PF00117 Glutamine amidotransferase class-I CH61_1143 PF00478 IMP dehydrogenase / GMP reductase domain CH61_1143 PF00571 CBS domain CH61_1144 PF13742 OB-fold nucleic acid binding domain CH61_1144 PF02601 Exonuclease VII, large subunit CH61_1145 PF07191 zinc-ribbons CH61_1147 PF01926 50S ribosome-binding GTPase CH61_1147 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CH61_1148 PF13360 PQQ-like domain CH61_1149 PF09976 Tetratricopeptide repeat-like domain CH61_115 PF00563 EAL domain CH61_115 PF00672 HAMP domain CH61_115 PF17154 Gammaproteobacterial periplasmic sensor domain CH61_115 PF00990 Diguanylate cyclase, GGDEF domain CH61_1150 PF13393 Histidyl-tRNA synthetase CH61_1150 PF03129 Anticodon binding domain CH61_1151 PF04551 GcpE protein CH61_1152 PF13464 Domain of unknown function (DUF4115) CH61_1154 PF04055 Radical SAM superfamily CH61_1155 PF00334 Nucleoside diphosphate kinase CH61_1157 PF03212 Pertactin CH61_1157 PF03797 Autotransporter beta-domain CH61_1157 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH61_1158 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH61_1158 PF03797 Autotransporter beta-domain CH61_1158 PF03212 Pertactin CH61_116 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH61_1160 PF14581 SseB protein C-terminal domain CH61_1160 PF07179 SseB protein N-terminal domain CH61_1161 PF00883 Cytosol aminopeptidase family, catalytic domain CH61_1161 PF12404 Peptidase CH61_1162 PF04384 Iron-sulphur cluster assembly CH61_1163 PF00111 2Fe-2S iron-sulfur cluster binding domain CH61_1164 PF00012 Hsp70 protein CH61_1165 PF00226 DnaJ domain CH61_1165 PF07743 HSCB C-terminal oligomerisation domain CH61_1166 PF01521 Iron-sulphur cluster biosynthesis CH61_1167 PF01592 NifU-like N terminal domain CH61_1168 PF00266 Aminotransferase class-V CH61_1169 PF02082 Transcriptional regulator CH61_117 PF06917 Periplasmic pectate lyase CH61_1170 PF00588 SpoU rRNA Methylase family CH61_1171 PF00459 Inositol monophosphatase family CH61_1172 PF01797 Transposase IS200 like CH61_1173 PF03824 High-affinity nickel-transport protein CH61_1174 PF06226 Protein of unknown function (DUF1007) CH61_1175 PF12832 MFS_1 like family CH61_1176 PF00874 PRD domain CH61_1177 PF13505 Outer membrane protein beta-barrel domain CH61_1178 PF00464 Serine hydroxymethyltransferase CH61_1179 PF00175 Oxidoreductase NAD-binding domain CH61_1179 PF00042 Globin CH61_1179 PF00970 Oxidoreductase FAD-binding domain CH61_1182 PF00543 Nitrogen regulatory protein P-II CH61_1183 PF02540 NAD synthase CH61_1183 PF00795 Carbon-nitrogen hydrolase CH61_1184 PF00158 Sigma-54 interaction domain CH61_1184 PF00072 Response regulator receiver domain CH61_1185 PF13942 YfhG lipoprotein CH61_1186 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_1186 PF00512 His Kinase A (phospho-acceptor) domain CH61_119 PF00375 Sodium:dicarboxylate symporter family CH61_1190 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CH61_1190 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CH61_1190 PF02769 AIR synthase related protein, C-terminal domain CH61_1191 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH61_1191 PF01464 Transglycosylase SLT domain CH61_1192 PF14437 MafB19-like deaminase CH61_1194 PF01380 SIS domain CH61_1195 PF01380 SIS domain CH61_1195 PF01418 Helix-turn-helix domain, rpiR family CH61_1196 PF12838 4Fe-4S dicluster domain CH61_1197 PF01797 Transposase IS200 like CH61_1198 PF01648 4'-phosphopantetheinyl transferase superfamily CH61_1199 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CH61_1200 PF01695 IstB-like ATP binding protein CH61_1201 PF02796 Helix-turn-helix domain of resolvase CH61_1201 PF00665 Integrase core domain CH61_1209 PF13953 PapC C-terminal domain CH61_1209 PF00577 Outer membrane usher protein CH61_1209 PF13954 PapC N-terminal domain CH61_121 PF00675 Insulinase (Peptidase family M16) CH61_121 PF05193 Peptidase M16 inactive domain CH61_1210 PF00872 Transposase, Mutator family CH61_1211 PF13954 PapC N-terminal domain CH61_1211 PF00577 Outer membrane usher protein CH61_1211 PF13953 PapC C-terminal domain CH61_1212 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH61_1212 PF02753 Pili assembly chaperone PapD, C-terminal domain CH61_1213 PF16970 Type-1 fimbrial protein, A CH61_1214 PF10431 C-terminal, D2-small domain, of ClpB protein CH61_1214 PF00004 ATPase family associated with various cellular activities (AAA) CH61_1214 PF17871 AAA lid domain CH61_1214 PF07724 AAA domain (Cdc48 subfamily) CH61_122 PF00294 pfkB family carbohydrate kinase CH61_1224 PF13406 Transglycosylase SLT domain CH61_1226 PF00528 Binding-protein-dependent transport system inner membrane component CH61_1227 PF00005 ABC transporter CH61_1229 PF05638 Type VI secretion system effector, Hcp CH61_123 PF01361 Tautomerase enzyme CH61_1231 PF00384 Molybdopterin oxidoreductase CH61_1231 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH61_1231 PF01568 Molydopterin dinucleotide binding domain CH61_1232 PF12800 4Fe-4S binding domain CH61_1232 PF13247 4Fe-4S dicluster domain CH61_1233 PF04976 DMSO reductase anchor subunit (DmsC) CH61_1234 PF02613 Nitrate reductase delta subunit CH61_1236 PF05643 Putative bacterial lipoprotein (DUF799) CH61_1238 PF03783 Curli production assembly/transport component CsgG CH61_124 PF00563 EAL domain CH61_1240 PF01292 Prokaryotic cytochrome b561 CH61_1241 PF00155 Aminotransferase class I and II CH61_1242 PF07350 Protein of unknown function (DUF1479) CH61_1243 PF02685 Glucokinase CH61_1245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_1245 PF03466 LysR substrate binding domain CH61_1246 PF00248 Aldo/keto reductase family CH61_1248 PF01566 Natural resistance-associated macrophage protein CH61_1249 PF07670 Nucleoside recognition CH61_1249 PF07662 Na+ dependent nucleoside transporter C-terminus CH61_1249 PF01773 Na+ dependent nucleoside transporter N-terminus CH61_125 PF02611 CDP-diacylglycerol pyrophosphatase CH61_1254 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH61_1255 PF01797 Transposase IS200 like CH61_126 PF05170 AsmA family CH61_1261 PF12843 Putative quorum-sensing-regulated virulence factor CH61_1262 PF00533 BRCA1 C Terminus (BRCT) domain CH61_1262 PF12826 Helix-hairpin-helix motif CH61_1262 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CH61_1262 PF03120 NAD-dependent DNA ligase OB-fold domain CH61_1262 PF01653 NAD-dependent DNA ligase adenylation domain CH61_1263 PF04354 ZipA, C-terminal FtsZ-binding domain CH61_1265 PF00291 Pyridoxal-phosphate dependent enzyme CH61_1266 PF00381 PTS HPr component phosphorylation site CH61_1267 PF02896 PEP-utilising enzyme, TIM barrel domain CH61_1267 PF00391 PEP-utilising enzyme, mobile domain CH61_1267 PF05524 PEP-utilising enzyme, N-terminal CH61_1268 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH61_1269 PF01797 Transposase IS200 like CH61_127 PF03631 Virulence factor BrkB CH61_1271 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_1271 PF00512 His Kinase A (phospho-acceptor) domain CH61_1271 PF00672 HAMP domain CH61_1271 PF16527 Two-component sensor protein CpxA, periplasmic domain CH61_1272 PF00486 Transcriptional regulatory protein, C terminal CH61_1272 PF00072 Response regulator receiver domain CH61_1273 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH61_1274 PF00005 ABC transporter CH61_1274 PF02687 FtsX-like permease family CH61_1274 PF12704 MacB-like periplasmic core domain CH61_1275 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH61_1275 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH61_1276 PF00474 Sodium:solute symporter family CH61_1278 PF00557 Metallopeptidase family M24 CH61_1278 PF05195 Aminopeptidase P, N-terminal domain CH61_1280 PF00155 Aminotransferase class I and II CH61_1282 PF00512 His Kinase A (phospho-acceptor) domain CH61_1282 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_1282 PF00672 HAMP domain CH61_1283 PF00486 Transcriptional regulatory protein, C terminal CH61_1283 PF00072 Response regulator receiver domain CH61_1285 PF00291 Pyridoxal-phosphate dependent enzyme CH61_1286 PF00005 ABC transporter CH61_1287 PF00528 Binding-protein-dependent transport system inner membrane component CH61_1288 PF00528 Binding-protein-dependent transport system inner membrane component CH61_1290 PF07690 Major Facilitator Superfamily CH61_1291 PF01380 SIS domain CH61_1291 PF01418 Helix-turn-helix domain, rpiR family CH61_1292 PF04074 YhcH/YjgK/YiaL CH61_1293 PF00480 ROK family CH61_1294 PF12468 Type III secretion system leucine rich repeat protein CH61_1295 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CH61_1296 PF00701 Dihydrodipicolinate synthetase family CH61_1297 PF04261 Dyp-type peroxidase family CH61_1298 PF06572 Protein of unknown function (DUF1131) CH61_1299 PF04076 Bacterial OB fold (BOF) protein CH61_13 PF13276 HTH-like domain CH61_13 PF13333 Integrase core domain CH61_13 PF00665 Integrase core domain CH61_1300 PF13018 Extended Signal Peptide of Type V secretion system CH61_1300 PF03797 Autotransporter beta-domain CH61_1300 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH61_1300 PF03212 Pertactin CH61_1303 PF00583 Acetyltransferase (GNAT) family CH61_1304 PF01218 Coproporphyrinogen III oxidase CH61_1305 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CH61_1306 PF00390 Malic enzyme, N-terminal domain CH61_1306 PF01515 Phosphate acetyl/butaryl transferase CH61_1306 PF03949 Malic enzyme, NAD binding domain CH61_1307 PF00293 NUDIX domain CH61_1308 PF03264 NapC/NirT cytochrome c family, N-terminal region CH61_1309 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CH61_1310 PF01568 Molydopterin dinucleotide binding domain CH61_1310 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH61_1310 PF00384 Molybdopterin oxidoreductase CH61_1310 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH61_1311 PF03927 NapD protein CH61_1312 PF00037 4Fe-4S binding domain CH61_1312 PF12800 4Fe-4S binding domain CH61_1312 PF13187 4Fe-4S dicluster domain CH61_1313 PF00196 Bacterial regulatory proteins, luxR family CH61_1313 PF00072 Response regulator receiver domain CH61_1315 PF00873 AcrB/AcrD/AcrF family CH61_1317 PF04307 LexA-binding, inner membrane-associated putative hydrolase CH61_1318 PF13186 Iron-sulfur cluster-binding domain CH61_1318 PF04055 Radical SAM superfamily CH61_1319 PF00884 Sulfatase CH61_132 PF02595 Glycerate kinase family CH61_1320 PF00005 ABC transporter CH61_1320 PF08402 TOBE domain CH61_1321 PF00528 Binding-protein-dependent transport system inner membrane component CH61_1324 PF03960 ArsC family CH61_1325 PF01546 Peptidase family M20/M25/M40 CH61_1325 PF07687 Peptidase dimerisation domain CH61_1326 PF02557 D-alanyl-D-alanine carboxypeptidase CH61_1327 PF13980 Uncharacterised protein family (UPF0370) CH61_1328 PF05127 Helicase CH61_1328 PF13718 GNAT acetyltransferase 2 CH61_1328 PF08351 Domain of unknown function (DUF1726) CH61_1328 PF17176 tRNA-binding domain CH61_1329 PF04284 Protein of unknown function (DUF441) CH61_133 PF02447 GntP family permease CH61_1330 PF04228 Putative neutral zinc metallopeptidase CH61_1331 PF01259 SAICAR synthetase CH61_1332 PF01797 Transposase IS200 like CH61_1333 PF06804 NlpB/DapX lipoprotein CH61_1334 PF00701 Dihydrodipicolinate synthetase family CH61_1335 PF01842 ACT domain CH61_1336 PF00578 AhpC/TSA family CH61_1339 PF01594 AI-2E family transporter CH61_134 PF13556 PucR C-terminal helix-turn-helix domain CH61_134 PF17853 GGDEF-like domain CH61_134 PF05651 Putative sugar diacid recognition CH61_1340 PF01435 Peptidase family M48 CH61_1340 PF07720 Tetratricopeptide repeat CH61_1341 PF03960 ArsC family CH61_1342 PF00308 Bacterial dnaA protein CH61_1343 PF01797 Transposase IS200 like CH61_1346 PF09190 DALR domain CH61_1346 PF01406 tRNA synthetases class I (C) catalytic domain CH61_1347 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH61_1348 PF00149 Calcineurin-like phosphoesterase CH61_1349 PF00731 AIR carboxylase CH61_135 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH61_135 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH61_1350 PF02222 ATP-grasp domain CH61_1350 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CH61_1352 PF00005 ABC transporter CH61_1353 PF13472 GDSL-like Lipase/Acylhydrolase family CH61_1354 PF00106 short chain dehydrogenase CH61_1355 PF00085 Thioredoxin CH61_1356 PF16200 C-terminal region of band_7 CH61_1356 PF01145 SPFH domain / Band 7 family CH61_1357 PF01957 NfeD-like C-terminal, partner-binding CH61_1358 PF13411 MerR HTH family regulatory protein CH61_1359 PF00403 Heavy-metal-associated domain CH61_136 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CH61_1360 PF01963 TraB family CH61_1361 PF04073 Aminoacyl-tRNA editing domain CH61_1364 PF02872 5'-nucleotidase, C-terminal domain CH61_1364 PF00149 Calcineurin-like phosphoesterase CH61_1365 PF00149 Calcineurin-like phosphoesterase CH61_1365 PF02872 5'-nucleotidase, C-terminal domain CH61_1366 PF02872 5'-nucleotidase, C-terminal domain CH61_1366 PF00149 Calcineurin-like phosphoesterase CH61_1367 PF07690 Major Facilitator Superfamily CH61_1368 PF02254 TrkA-N domain CH61_1368 PF00999 Sodium/hydrogen exchanger family CH61_1369 PF00294 pfkB family carbohydrate kinase CH61_137 PF01432 Peptidase family M3 CH61_1370 PF02706 Chain length determinant protein CH61_1371 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH61_1371 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH61_1371 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH61_1371 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH61_1372 PF00535 Glycosyl transferase family 2 CH61_1373 PF00483 Nucleotidyl transferase CH61_1373 PF01050 Mannose-6-phosphate isomerase CH61_1376 PF16363 GDP-mannose 4,6 dehydratase CH61_1377 PF16363 GDP-mannose 4,6 dehydratase CH61_1378 PF13439 Glycosyltransferase Family 4 CH61_1378 PF00534 Glycosyl transferases group 1 CH61_138 PF04445 Putative SAM-dependent methyltransferase CH61_1386 PF01370 NAD dependent epimerase/dehydratase family CH61_1387 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH61_1388 PF16363 GDP-mannose 4,6 dehydratase CH61_1389 PF00483 Nucleotidyl transferase CH61_139 PF08548 Peptidase M10 serralysin C terminal CH61_139 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CH61_139 PF00413 Matrixin CH61_1390 PF00175 Oxidoreductase NAD-binding domain CH61_1390 PF00970 Oxidoreductase FAD-binding domain CH61_1390 PF00111 2Fe-2S iron-sulfur cluster binding domain CH61_1391 PF00762 Ferrochelatase CH61_1392 PF05191 Adenylate kinase, active site lid CH61_1393 PF00183 Hsp90 protein CH61_1393 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_1394 PF13662 Toprim domain CH61_1394 PF02132 RecR protein CH61_1395 PF02575 YbaB/EbfC DNA-binding family CH61_1396 PF12170 DNA polymerase III tau subunit V interacting with alpha CH61_1396 PF12169 DNA polymerase III subunits gamma and tau domain III CH61_1396 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CH61_1397 PF00156 Phosphoribosyl transferase domain CH61_1398 PF01695 IstB-like ATP binding protein CH61_140 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CH61_140 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH61_1402 PF02796 Helix-turn-helix domain of resolvase CH61_1402 PF00665 Integrase core domain CH61_1403 PF04304 Protein of unknown function (DUF454) CH61_1405 PF10689 Protein of unknown function (DUF2496) CH61_1406 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH61_1406 PF12795 Mechanosensitive ion channel porin domain CH61_1406 PF00924 Mechanosensitive ion channel CH61_1407 PF02635 DsrE/DsrF-like family CH61_1408 PF08361 MAATS-type transcriptional repressor, C-terminal region CH61_1408 PF00440 Bacterial regulatory proteins, tetR family CH61_1409 PF00529 HlyD membrane-fusion protein of T1SS CH61_1409 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH61_141 PF00582 Universal stress protein family CH61_1410 PF00873 AcrB/AcrD/AcrF family CH61_1411 PF01197 Ribosomal protein L31 CH61_1412 PF00444 Ribosomal protein L36 CH61_1414 PF10757 Biofilm formation regulator YbaJ CH61_1415 PF05321 Haemolysin expression modulating protein CH61_1416 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH61_1417 PF09619 Type III secretion system lipoprotein chaperone (YscW) CH61_1419 PF00909 Ammonium Transporter Family CH61_142 PF10625 Universal stress protein B (UspB) CH61_1420 PF00543 Nitrogen regulatory protein P-II CH61_1421 PF00664 ABC transporter transmembrane region CH61_1421 PF00005 ABC transporter CH61_1422 PF00664 ABC transporter transmembrane region CH61_1422 PF00005 ABC transporter CH61_1423 PF13404 AsnC-type helix-turn-helix domain CH61_1423 PF01037 Lrp/AsnC ligand binding domain CH61_1424 PF00291 Pyridoxal-phosphate dependent enzyme CH61_1426 PF12793 Sugar transport-related sRNA regulator N-term CH61_1426 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH61_1427 PF06508 Queuosine biosynthesis protein QueC CH61_143 PF01797 Transposase IS200 like CH61_1430 PF13145 PPIC-type PPIASE domain CH61_1431 PF00216 Bacterial DNA-binding protein CH61_1432 PF00004 ATPase family associated with various cellular activities (AAA) CH61_1432 PF02190 ATP-dependent protease La (LON) substrate-binding domain CH61_1432 PF05362 Lon protease (S16) C-terminal proteolytic domain CH61_1433 PF07724 AAA domain (Cdc48 subfamily) CH61_1433 PF06689 ClpX C4-type zinc finger CH61_1433 PF10431 C-terminal, D2-small domain, of ClpB protein CH61_1434 PF00574 Clp protease CH61_1435 PF05698 Bacterial trigger factor protein (TF) C-terminus CH61_1435 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH61_1435 PF05697 Bacterial trigger factor protein (TF) CH61_1437 PF01722 BolA-like protein CH61_1438 PF03923 Uncharacterized lipoprotein CH61_1438 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH61_1439 PF07690 Major Facilitator Superfamily CH61_144 PF01384 Phosphate transporter family CH61_1440 PF03502 Nucleoside-specific channel-forming protein, Tsx CH61_1441 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CH61_1441 PF06481 COX Aromatic Rich Motif CH61_1442 PF00115 Cytochrome C and Quinol oxidase polypeptide I CH61_1443 PF00510 Cytochrome c oxidase subunit III CH61_1444 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CH61_1445 PF01040 UbiA prenyltransferase family CH61_1446 PF07690 Major Facilitator Superfamily CH61_1447 PF04461 Protein of unknown function (DUF520) CH61_1448 PF02558 Ketopantoate reductase PanE/ApbA CH61_1448 PF08546 Ketopantoate reductase PanE/ApbA C terminal CH61_1449 PF01965 DJ-1/PfpI family CH61_1450 PF02926 THUMP domain CH61_1450 PF02568 Thiamine biosynthesis protein (ThiI) CH61_1451 PF02609 Exonuclease VII small subunit CH61_1452 PF00348 Polyprenyl synthetase CH61_1453 PF02779 Transketolase, pyrimidine binding domain CH61_1453 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CH61_1453 PF02780 Transketolase, C-terminal domain CH61_1454 PF01797 Transposase IS200 like CH61_1455 PF04608 Phosphatidylglycerophosphatase A CH61_1456 PF02769 AIR synthase related protein, C-terminal domain CH61_1456 PF00586 AIR synthase related protein, N-terminal domain CH61_1457 PF01029 NusB family CH61_1458 PF00885 6,7-dimethyl-8-ribityllumazine synthase CH61_1459 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH61_1459 PF01872 RibD C-terminal domain CH61_146 PF00512 His Kinase A (phospho-acceptor) domain CH61_146 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_146 PF08448 PAS fold CH61_146 PF13188 PAS domain CH61_146 PF00072 Response regulator receiver domain CH61_1460 PF03477 ATP cone domain CH61_1463 PF01797 Transposase IS200 like CH61_1464 PF07549 SecD/SecF GG Motif CH61_1464 PF02355 Protein export membrane protein CH61_1465 PF02355 Protein export membrane protein CH61_1465 PF07549 SecD/SecF GG Motif CH61_1465 PF13721 SecD export protein N-terminal TM region CH61_1466 PF02699 Preprotein translocase subunit CH61_1467 PF01702 Queuine tRNA-ribosyltransferase CH61_1468 PF02547 Queuosine biosynthesis protein CH61_1469 PF04336 Acyl carrier protein phosphodiesterase CH61_147 PF00005 ABC transporter CH61_1470 PF10417 C-terminal domain of 1-Cys peroxiredoxin CH61_1470 PF00578 AhpC/TSA family CH61_1471 PF01797 Transposase IS200 like CH61_1475 PF00128 Alpha amylase, catalytic domain CH61_1475 PF02903 Alpha amylase, N-terminal ig-like domain CH61_1476 PF00324 Amino acid permease CH61_1477 PF05525 Branched-chain amino acid transport protein CH61_1478 PF12849 PBP superfamily domain CH61_1479 PF11808 Phosphate regulon sensor protein PhoR CH61_1479 PF00989 PAS fold CH61_1479 PF00512 His Kinase A (phospho-acceptor) domain CH61_1479 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_148 PF02653 Branched-chain amino acid transport system / permease component CH61_1480 PF00486 Transcriptional regulatory protein, C terminal CH61_1480 PF00072 Response regulator receiver domain CH61_1481 PF12320 Type 5 capsule protein repressor C-terminal domain CH61_1481 PF00149 Calcineurin-like phosphoesterase CH61_1482 PF13476 AAA domain CH61_1483 PF01695 IstB-like ATP binding protein CH61_1485 PF00665 Integrase core domain CH61_1485 PF02796 Helix-turn-helix domain of resolvase CH61_1486 PF00480 ROK family CH61_1487 PF04381 Putative exonuclease, RdgC CH61_1488 PF06865 Pyrimidine/purine nucleoside phosphorylase CH61_1489 PF01202 Shikimate kinase CH61_149 PF13407 Periplasmic binding protein domain CH61_1491 PF08241 Methyltransferase domain CH61_1493 PF07317 Flagellar regulator YcgR CH61_1493 PF07238 PilZ domain CH61_1494 PF00171 Aldehyde dehydrogenase family CH61_1495 PF00696 Amino acid kinase family CH61_1495 PF01472 PUA domain CH61_1496 PF07417 Sigma factor-binding transcriptional regulator Crl CH61_1498 PF00156 Phosphoribosyl transferase domain CH61_1502 PF01546 Peptidase family M20/M25/M40 CH61_1502 PF07687 Peptidase dimerisation domain CH61_1503 PF00817 impB/mucB/samB family CH61_1503 PF11799 impB/mucB/samB family C-terminal domain CH61_1503 PF11798 IMS family HHH motif CH61_1504 PF03009 Glycerophosphoryl diester phosphodiesterase family CH61_1506 PF02424 ApbE family CH61_1507 PF00970 Oxidoreductase FAD-binding domain CH61_1507 PF00175 Oxidoreductase NAD-binding domain CH61_1507 PF00111 2Fe-2S iron-sulfur cluster binding domain CH61_1508 PF02508 Rnf-Nqr subunit, membrane protein CH61_1509 PF02508 Rnf-Nqr subunit, membrane protein CH61_151 PF01116 Fructose-bisphosphate aldolase class-II CH61_1510 PF04205 FMN-binding domain CH61_1511 PF03116 NQR2, RnfD, RnfE family CH61_1512 PF11973 NQRA C-terminal domain CH61_1512 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CH61_1513 PF13230 Glutamine amidotransferases class-II CH61_1514 PF03734 L,D-transpeptidase catalytic domain CH61_1515 PF13580 SIS domain CH61_1516 PF09317 Domain of unknown function (DUF1974) CH61_1516 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH61_1516 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH61_1518 PF18254 HMW1 domain 2 CH61_1518 PF18071 HMW1C N-terminal CH61_1519 PF05860 haemagglutination activity domain CH61_1520 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH61_1520 PF08479 POTRA domain, ShlB-type CH61_1521 PF01546 Peptidase family M20/M25/M40 CH61_1521 PF07687 Peptidase dimerisation domain CH61_1522 PF00266 Aminotransferase class-V CH61_1523 PF02796 Helix-turn-helix domain of resolvase CH61_1523 PF00665 Integrase core domain CH61_1525 PF01695 IstB-like ATP binding protein CH61_1526 PF13356 Arm DNA-binding domain CH61_1526 PF00589 Phage integrase family CH61_1527 PF01527 Transposase CH61_1529 PF12697 Alpha/beta hydrolase family CH61_153 PF00486 Transcriptional regulatory protein, C terminal CH61_153 PF00072 Response regulator receiver domain CH61_1531 PF01402 Ribbon-helix-helix protein, copG family CH61_1532 PF00258 Flavodoxin CH61_1533 PF01475 Ferric uptake regulator family CH61_1534 PF03173 Putative carbohydrate binding domain CH61_1534 PF02838 Glycosyl hydrolase family 20, domain 2 CH61_1534 PF00728 Glycosyl hydrolase family 20, catalytic domain CH61_1534 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CH61_1535 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CH61_1535 PF02838 Glycosyl hydrolase family 20, domain 2 CH61_1535 PF00728 Glycosyl hydrolase family 20, catalytic domain CH61_1535 PF03173 Putative carbohydrate binding domain CH61_1536 PF03573 outer membrane porin, OprD family CH61_1537 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CH61_1537 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH61_1538 PF01797 Transposase IS200 like CH61_1539 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH61_1539 PF00367 phosphotransferase system, EIIB CH61_1539 PF02378 Phosphotransferase system, EIIC CH61_1540 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CH61_1541 PF01979 Amidohydrolase family CH61_1542 PF01047 MarR family CH61_1542 PF00480 ROK family CH61_1543 PF13344 Haloacid dehalogenase-like hydrolase CH61_1544 PF00733 Asparagine synthase CH61_1544 PF13537 Glutamine amidotransferase domain CH61_155 PF02678 Pirin CH61_155 PF17954 Quercetinase C-terminal cupin domain CH61_1550 PF01494 FAD binding domain CH61_1551 PF04055 Radical SAM superfamily CH61_1551 PF01938 TRAM domain CH61_1551 PF00919 Uncharacterized protein family UPF0004 CH61_1552 PF02562 PhoH-like protein CH61_1553 PF02130 Uncharacterized protein family UPF0054 CH61_1554 PF00571 CBS domain CH61_1554 PF03471 Transporter associated domain CH61_1555 PF00795 Carbon-nitrogen hydrolase CH61_1556 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH61_1557 PF00528 Binding-protein-dependent transport system inner membrane component CH61_1558 PF00528 Binding-protein-dependent transport system inner membrane component CH61_1559 PF00005 ABC transporter CH61_156 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH61_156 PF00356 Bacterial regulatory proteins, lacI family CH61_1560 PF07295 Zinc-ribbon containing domain CH61_1561 PF13603 Leucyl-tRNA synthetase, Domain 2 CH61_1561 PF08264 Anticodon-binding domain of tRNA CH61_1561 PF00133 tRNA synthetases class I (I, L, M and V) CH61_1562 PF04390 Lipopolysaccharide-assembly CH61_1563 PF06144 DNA polymerase III, delta subunit CH61_1563 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CH61_1564 PF01467 Cytidylyltransferase-like CH61_1566 PF02590 Predicted SPOUT methyltransferase CH61_1567 PF00905 Penicillin binding protein transpeptidase domain CH61_1567 PF03717 Penicillin-binding Protein dimerisation domain CH61_1568 PF01098 Cell cycle protein CH61_1569 PF03330 Lytic transglycolase CH61_1569 PF05036 Sporulation related domain CH61_157 PF02447 GntP family permease CH61_1570 PF07943 Penicillin-binding protein 5, C-terminal domain CH61_1570 PF00768 D-alanyl-D-alanine carboxypeptidase CH61_1571 PF04359 Protein of unknown function (DUF493) CH61_1572 PF03099 Biotin/lipoate A/B protein ligase family CH61_1573 PF04055 Radical SAM superfamily CH61_1573 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CH61_1574 PF02416 mttA/Hcf106 family CH61_1575 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH61_1576 PF00313 'Cold-shock' DNA-binding domain CH61_1578 PF00196 Bacterial regulatory proteins, luxR family CH61_158 PF01202 Shikimate kinase CH61_1583 PF00005 ABC transporter CH61_1583 PF00664 ABC transporter transmembrane region CH61_1585 PF04962 KduI/IolB family CH61_1586 PF01261 Xylose isomerase-like TIM barrel CH61_1587 PF00294 pfkB family carbohydrate kinase CH61_1588 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH61_1588 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH61_1589 PF02653 Branched-chain amino acid transport system / permease component CH61_1590 PF00005 ABC transporter CH61_1591 PF13407 Periplasmic binding protein domain CH61_1592 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH61_1592 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH61_1593 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH61_1593 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH61_1594 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH61_1594 PF00205 Thiamine pyrophosphate enzyme, central domain CH61_1594 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH61_1595 PF00171 Aldehyde dehydrogenase family CH61_16 PF02423 Ornithine cyclodeaminase/mu-crystallin family CH61_1600 PF00207 Alpha-2-macroglobulin family CH61_1600 PF07703 Alpha-2-macroglobulin bait region domain CH61_1600 PF01835 MG2 domain CH61_1600 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CH61_1600 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CH61_1600 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CH61_1600 PF17962 Bacterial macroglobulin domain 6 CH61_1601 PF00912 Transglycosylase CH61_1601 PF00905 Penicillin binding protein transpeptidase domain CH61_1601 PF06832 Penicillin-Binding Protein C-terminus Family CH61_1602 PF00872 Transposase, Mutator family CH61_1604 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH61_1605 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH61_1605 PF00356 Bacterial regulatory proteins, lacI family CH61_1606 PF07085 DRTGG domain CH61_1606 PF01515 Phosphate acetyl/butaryl transferase CH61_1607 PF00871 Acetokinase family CH61_1608 PF04217 Protein of unknown function, DUF412 CH61_1609 PF03887 YfbU domain CH61_1610 PF13419 Haloacid dehalogenase-like hydrolase CH61_1611 PF03600 Citrate transporter CH61_1611 PF02080 TrkA-C domain CH61_1613 PF00155 Aminotransferase class I and II CH61_1614 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_1614 PF03466 LysR substrate binding domain CH61_1615 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CH61_1616 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH61_1617 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CH61_1617 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CH61_1619 PF10531 SLBB domain CH61_1619 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH61_1619 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH61_162 PF01914 MarC family integral membrane protein CH61_1620 PF01568 Molydopterin dinucleotide binding domain CH61_1620 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH61_1620 PF00384 Molybdopterin oxidoreductase CH61_1620 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH61_1621 PF00146 NADH dehydrogenase CH61_1622 PF12838 4Fe-4S dicluster domain CH61_1623 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CH61_1624 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CH61_1625 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH61_1625 PF00361 Proton-conducting membrane transporter CH61_1626 PF00361 Proton-conducting membrane transporter CH61_1627 PF00361 Proton-conducting membrane transporter CH61_1629 PF04074 YhcH/YjgK/YiaL CH61_163 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH61_163 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH61_1630 PF01202 Shikimate kinase CH61_1631 PF00106 short chain dehydrogenase CH61_1633 PF00356 Bacterial regulatory proteins, lacI family CH61_1634 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH61_1634 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH61_1635 PF07690 Major Facilitator Superfamily CH61_1636 PF03928 Haem-degrading CH61_1637 PF00920 Dehydratase family CH61_1639 PF05957 Bacterial protein of unknown function (DUF883) CH61_1641 PF00425 chorismate binding enzyme CH61_1642 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH61_1642 PF16582 Middle domain of thiamine pyrophosphate CH61_1642 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH61_1643 PF12697 Alpha/beta hydrolase family CH61_1644 PF00378 Enoyl-CoA hydratase/isomerase CH61_1645 PF13378 Enolase C-terminal domain-like CH61_1646 PF13193 AMP-binding enzyme C-terminal domain CH61_1646 PF00501 AMP-binding enzyme CH61_1647 PF02885 Glycosyl transferase family, helical bundle domain CH61_1648 PF07338 Protein of unknown function (DUF1471) CH61_1649 PF05971 RNA methyltransferase CH61_1650 PF01695 IstB-like ATP binding protein CH61_1651 PF02796 Helix-turn-helix domain of resolvase CH61_1651 PF00665 Integrase core domain CH61_1652 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH61_1652 PF13426 PAS domain CH61_1652 PF08447 PAS fold CH61_1653 PF00005 ABC transporter CH61_1654 PF00528 Binding-protein-dependent transport system inner membrane component CH61_1655 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH61_1657 PF00210 Ferritin-like domain CH61_1658 PF13649 Methyltransferase domain CH61_1660 PF00892 EamA-like transporter family CH61_1661 PF13505 Outer membrane protein beta-barrel domain CH61_1665 PF00107 Zinc-binding dehydrogenase CH61_1665 PF08240 Alcohol dehydrogenase GroES-like domain CH61_1666 PF13407 Periplasmic binding protein domain CH61_1667 PF00005 ABC transporter CH61_1668 PF02653 Branched-chain amino acid transport system / permease component CH61_1669 PF00356 Bacterial regulatory proteins, lacI family CH61_1670 PF03466 LysR substrate binding domain CH61_1670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_1671 PF00180 Isocitrate/isopropylmalate dehydrogenase CH61_1672 PF02028 BCCT, betaine/carnitine/choline family transporter CH61_1673 PF00355 Rieske [2Fe-2S] domain CH61_1673 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CH61_1674 PF00970 Oxidoreductase FAD-binding domain CH61_1674 PF00111 2Fe-2S iron-sulfur cluster binding domain CH61_1674 PF00175 Oxidoreductase NAD-binding domain CH61_1675 PF08479 POTRA domain, ShlB-type CH61_1675 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH61_1675 PF17287 POTRA domain CH61_1676 PF05860 haemagglutination activity domain CH61_1676 PF04829 Pre-toxin domain with VENN motif CH61_1676 PF13018 Extended Signal Peptide of Type V secretion system CH61_1676 PF13332 Hemagglutinin repeat CH61_1679 PF13332 Hemagglutinin repeat CH61_1679 PF05860 haemagglutination activity domain CH61_1679 PF13018 Extended Signal Peptide of Type V secretion system CH61_1679 PF04829 Pre-toxin domain with VENN motif CH61_168 PF07979 Intimin C-type lectin domain CH61_168 PF02369 Bacterial Ig-like domain (group 1) CH61_168 PF11924 Inverse autotransporter, beta-domain CH61_168 PF09134 Invasin, domain 3 CH61_1682 PF05860 haemagglutination activity domain CH61_1682 PF05594 Haemagluttinin repeat CH61_1682 PF15526 Novel toxin 21 CH61_1682 PF04829 Pre-toxin domain with VENN motif CH61_1682 PF13332 Hemagglutinin repeat CH61_1684 PF00005 ABC transporter CH61_1684 PF17912 MalK OB fold domain CH61_1685 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH61_1685 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH61_1685 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH61_1685 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH61_1686 PF00356 Bacterial regulatory proteins, lacI family CH61_1688 PF00528 Binding-protein-dependent transport system inner membrane component CH61_1689 PF00528 Binding-protein-dependent transport system inner membrane component CH61_169 PF07694 5TMR of 5TMR-LYT CH61_169 PF06580 Histidine kinase CH61_1690 PF04041 beta-1,4-mannooligosaccharide phosphorylase CH61_1694 PF00924 Mechanosensitive ion channel CH61_1695 PF01867 CRISPR associated protein Cas1 CH61_1697 PF09611 CRISPR-associated protein (Cas_Csy1) CH61_1698 PF09614 CRISPR-associated protein (Cas_Csy2) CH61_1699 PF09615 CRISPR-associated protein (Cas_Csy3) CH61_17 PF13291 ACT domain CH61_17 PF00291 Pyridoxal-phosphate dependent enzyme CH61_170 PF00128 Alpha amylase, catalytic domain CH61_170 PF02806 Alpha amylase, C-terminal all-beta domain CH61_170 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH61_1700 PF09618 CRISPR-associated protein (Cas_Csy4) CH61_1701 PF00248 Aldo/keto reductase family CH61_1703 PF00083 Sugar (and other) transporter CH61_1705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_1705 PF03466 LysR substrate binding domain CH61_1706 PF00765 Autoinducer synthase CH61_1707 PF00196 Bacterial regulatory proteins, luxR family CH61_1707 PF03472 Autoinducer binding domain CH61_171 PF18390 Glycogen debranching enzyme C-terminal domain CH61_171 PF00128 Alpha amylase, catalytic domain CH61_171 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH61_1711 PF01594 AI-2E family transporter CH61_1712 PF00196 Bacterial regulatory proteins, luxR family CH61_1713 PF01266 FAD dependent oxidoreductase CH61_1714 PF00872 Transposase, Mutator family CH61_1715 PF13419 Haloacid dehalogenase-like hydrolase CH61_1716 PF14002 YniB-like protein CH61_1718 PF00950 ABC 3 transport family CH61_1719 PF00950 ABC 3 transport family CH61_172 PF00483 Nucleotidyl transferase CH61_1720 PF00005 ABC transporter CH61_1721 PF01297 Zinc-uptake complex component A periplasmic CH61_1722 PF01464 Transglycosylase SLT domain CH61_1723 PF01914 MarC family integral membrane protein CH61_1725 PF13619 KTSC domain CH61_1726 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH61_1726 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH61_1726 PF02824 TGS domain CH61_1726 PF03129 Anticodon binding domain CH61_1727 PF05198 Translation initiation factor IF-3, N-terminal domain CH61_1727 PF00707 Translation initiation factor IF-3, C-terminal domain CH61_1728 PF01632 Ribosomal protein L35 CH61_1729 PF00453 Ribosomal protein L20 CH61_173 PF08323 Starch synthase catalytic domain CH61_173 PF00534 Glycosyl transferases group 1 CH61_1730 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CH61_1730 PF01409 tRNA synthetases class II core domain (F) CH61_1731 PF03484 tRNA synthetase B5 domain CH61_1731 PF01588 Putative tRNA binding domain CH61_1731 PF03147 Ferredoxin-fold anticodon binding domain CH61_1731 PF03483 B3/4 domain CH61_1731 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CH61_1732 PF00216 Bacterial DNA-binding protein CH61_1734 PF01032 FecCD transport family CH61_1735 PF00255 Glutathione peroxidase CH61_1736 PF00005 ABC transporter CH61_1737 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH61_1738 PF00535 Glycosyl transferase family 2 CH61_1739 PF01370 NAD dependent epimerase/dehydratase family CH61_1739 PF02911 Formyl transferase, C-terminal domain CH61_1739 PF00551 Formyl transferase CH61_174 PF00343 Carbohydrate phosphorylase CH61_1740 PF01522 Polysaccharide deacetylase CH61_1741 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CH61_1742 PF00892 EamA-like transporter family CH61_1744 PF00877 NlpC/P60 family CH61_1745 PF10437 Bacterial lipoate protein ligase C-terminus CH61_1745 PF03099 Biotin/lipoate A/B protein ligase family CH61_1746 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CH61_1747 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CH61_1748 PF00793 DAHP synthetase I family CH61_1749 PF03618 Kinase/pyrophosphorylase CH61_175 PF01266 FAD dependent oxidoreductase CH61_175 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CH61_1750 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CH61_1750 PF00391 PEP-utilising enzyme, mobile domain CH61_1750 PF02896 PEP-utilising enzyme, TIM barrel domain CH61_1751 PF01594 AI-2E family transporter CH61_1752 PF13183 4Fe-4S dicluster domain CH61_1752 PF01565 FAD binding domain CH61_1752 PF02913 FAD linked oxidases, C-terminal domain CH61_1753 PF03061 Thioesterase superfamily CH61_1754 PF01521 Iron-sulphur cluster biosynthesis CH61_1755 PF01458 Uncharacterized protein family (UPF0051) CH61_1756 PF00005 ABC transporter CH61_1757 PF01458 Uncharacterized protein family (UPF0051) CH61_1758 PF00266 Aminotransferase class-V CH61_1759 PF02657 Fe-S metabolism associated domain CH61_1760 PF01476 LysM domain CH61_1760 PF17969 L,D-transpeptidase C-terminal domain CH61_1760 PF03734 L,D-transpeptidase catalytic domain CH61_1761 PF01695 IstB-like ATP binding protein CH61_1762 PF02796 Helix-turn-helix domain of resolvase CH61_1762 PF00665 Integrase core domain CH61_1763 PF02796 Helix-turn-helix domain of resolvase CH61_1763 PF00665 Integrase core domain CH61_1764 PF01797 Transposase IS200 like CH61_1765 PF04728 Lipoprotein leucine-zipper CH61_1766 PF00224 Pyruvate kinase, barrel domain CH61_1766 PF02887 Pyruvate kinase, alpha/beta domain CH61_1769 PF01554 MatE CH61_1770 PF00677 Lumazine binding domain CH61_1772 PF07690 Major Facilitator Superfamily CH61_1773 PF03466 LysR substrate binding domain CH61_1773 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_1774 PF00356 Bacterial regulatory proteins, lacI family CH61_1776 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH61_1776 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH61_1777 PF00877 NlpC/P60 family CH61_1779 PF00462 Glutaredoxin CH61_178 PF13333 Integrase core domain CH61_178 PF00665 Integrase core domain CH61_178 PF13276 HTH-like domain CH61_1780 PF00929 Exonuclease CH61_1781 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH61_1782 PF18807 Tripartite Tc toxins repeat CH61_1782 PF14431 YwqJ-like deaminase CH61_1783 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH61_1784 PF16925 Tetracyclin repressor-like, C-terminal domain CH61_1784 PF00440 Bacterial regulatory proteins, tetR family CH61_1785 PF00884 Sulfatase CH61_1785 PF08019 Phosphoethanolamine transferase EptA/EptB CH61_1786 PF06945 Protein of unknown function (DUF1289) CH61_1787 PF00248 Aldo/keto reductase family CH61_1788 PF01047 MarR family CH61_1789 PF05433 Glycine zipper 2TM domain CH61_1790 PF03702 Anhydro-N-acetylmuramic acid kinase CH61_1791 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CH61_1792 PF01243 Pyridoxamine 5'-phosphate oxidase CH61_1792 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CH61_1793 PF01479 S4 domain CH61_1793 PF00579 tRNA synthetases class I (W and Y) CH61_1794 PF08543 Phosphomethylpyrimidine kinase CH61_1795 PF00043 Glutathione S-transferase, C-terminal domain CH61_1795 PF02798 Glutathione S-transferase, N-terminal domain CH61_1796 PF00665 Integrase core domain CH61_1796 PF02796 Helix-turn-helix domain of resolvase CH61_1797 PF01695 IstB-like ATP binding protein CH61_1798 PF11656 YjbD family (DUF3811) CH61_1799 PF04893 Yip1 domain CH61_18 PF07676 WD40-like Beta Propeller Repeat CH61_18 PF12566 Protein of unknown function (DUF3748) CH61_180 PF00665 Integrase core domain CH61_180 PF02796 Helix-turn-helix domain of resolvase CH61_1800 PF00854 POT family CH61_1803 PF00005 ABC transporter CH61_1804 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH61_1804 PF00005 ABC transporter CH61_1805 PF12911 N-terminal TM domain of oligopeptide transport permease C CH61_1805 PF00528 Binding-protein-dependent transport system inner membrane component CH61_1806 PF00528 Binding-protein-dependent transport system inner membrane component CH61_1807 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH61_1808 PF01797 Transposase IS200 like CH61_1809 PF00158 Sigma-54 interaction domain CH61_1809 PF02954 Bacterial regulatory protein, Fis family CH61_181 PF01695 IstB-like ATP binding protein CH61_1810 PF04012 PspA/IM30 family CH61_1811 PF06667 Phage shock protein B CH61_1812 PF04024 PspC domain CH61_1814 PF04317 YcjX-like family, DUF463 CH61_1815 PF05128 Domain of unknown function (DUF697) CH61_1818 PF18024 Helix-turn-helix domain CH61_1818 PF00158 Sigma-54 interaction domain CH61_1819 PF01797 Transposase IS200 like CH61_1820 PF08534 Redoxin CH61_1821 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH61_1821 PF13378 Enolase C-terminal domain-like CH61_1822 PF00246 Zinc carboxypeptidase CH61_1823 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH61_1824 PF01544 CorA-like Mg2+ transporter protein CH61_1826 PF13472 GDSL-like Lipase/Acylhydrolase family CH61_1826 PF07859 alpha/beta hydrolase fold CH61_1828 PF01171 PP-loop family CH61_1829 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CH61_1829 PF10371 Domain of unknown function CH61_1829 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CH61_1829 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CH61_1829 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH61_183 PF00311 Phosphoenolpyruvate carboxylase CH61_1830 PF00893 Small Multidrug Resistance protein CH61_1831 PF02308 MgtC family CH61_1832 PF03891 Domain of unknown function (DUF333) CH61_1833 PF03724 META domain CH61_1834 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH61_1834 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH61_1835 PF11739 Dicarboxylate transport CH61_1836 PF13617 YnbE-like lipoprotein CH61_1837 PF07027 Protein of unknown function (DUF1318) CH61_1838 PF08125 Mannitol dehydrogenase C-terminal domain CH61_1838 PF01232 Mannitol dehydrogenase Rossmann domain CH61_1839 PF00325 Bacterial regulatory proteins, crp family CH61_1839 PF04198 Putative sugar-binding domain CH61_184 PF01546 Peptidase family M20/M25/M40 CH61_184 PF07687 Peptidase dimerisation domain CH61_1840 PF02525 Flavodoxin-like fold CH61_1841 PF00270 DEAD/DEAH box helicase CH61_1841 PF11898 Domain of unknown function (DUF3418) CH61_1841 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CH61_1841 PF00271 Helicase conserved C-terminal domain CH61_1841 PF04408 Helicase associated domain (HA2) CH61_1844 PF00089 Trypsin CH61_1846 PF01292 Prokaryotic cytochrome b561 CH61_1847 PF04264 YceI-like domain CH61_1849 PF14431 YwqJ-like deaminase CH61_1849 PF18807 Tripartite Tc toxins repeat CH61_185 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH61_185 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH61_1850 PF01797 Transposase IS200 like CH61_1851 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CH61_1852 PF00512 His Kinase A (phospho-acceptor) domain CH61_1852 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_1852 PF00672 HAMP domain CH61_1853 PF00072 Response regulator receiver domain CH61_1853 PF00486 Transcriptional regulatory protein, C terminal CH61_1855 PF13520 Amino acid permease CH61_1856 PF07338 Protein of unknown function (DUF1471) CH61_1857 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CH61_1857 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CH61_1857 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CH61_1858 PF02233 NAD(P) transhydrogenase beta subunit CH61_1859 PF00582 Universal stress protein family CH61_186 PF00696 Amino acid kinase family CH61_1860 PF00027 Cyclic nucleotide-binding domain CH61_1860 PF13545 Crp-like helix-turn-helix domain CH61_1861 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH61_1861 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH61_1862 PF00245 Alkaline phosphatase CH61_1865 PF13419 Haloacid dehalogenase-like hydrolase CH61_1866 PF01842 ACT domain CH61_1867 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH61_1867 PF00205 Thiamine pyrophosphate enzyme, central domain CH61_1867 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH61_187 PF00206 Lyase CH61_187 PF14698 Argininosuccinate lyase C-terminal CH61_1872 PF01048 Phosphorylase superfamily CH61_1872 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CH61_1873 PF00528 Binding-protein-dependent transport system inner membrane component CH61_1874 PF09084 NMT1/THI5 like CH61_1875 PF13407 Periplasmic binding protein domain CH61_1877 PF00356 Bacterial regulatory proteins, lacI family CH61_1881 PF05707 Zonular occludens toxin (Zot) CH61_189 PF07715 TonB-dependent Receptor Plug Domain CH61_189 PF00593 TonB dependent receptor CH61_1891 PF00654 Voltage gated chloride channel CH61_1894 PF00480 ROK family CH61_1895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_1895 PF03466 LysR substrate binding domain CH61_1896 PF07690 Major Facilitator Superfamily CH61_1897 PF05472 DNA replication terminus site-binding protein (Ter protein) CH61_1898 PF10415 Fumarase C C-terminus CH61_1898 PF00206 Lyase CH61_1899 PF01238 Phosphomannose isomerase type I CH61_19 PF07676 WD40-like Beta Propeller Repeat CH61_19 PF12566 Protein of unknown function (DUF3748) CH61_1900 PF06097 Bacterial protein of unknown function (DUF945) CH61_1902 PF13593 SBF-like CPA transporter family (DUF4137) CH61_1903 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH61_1903 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH61_1904 PF02311 AraC-like ligand binding domain CH61_1904 PF12833 Helix-turn-helix domain CH61_1905 PF02653 Branched-chain amino acid transport system / permease component CH61_1906 PF00005 ABC transporter CH61_1907 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH61_1908 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH61_1909 PF11762 L-arabinose isomerase C-terminal domain CH61_1909 PF02610 L-arabinose isomerase CH61_191 PF00005 ABC transporter CH61_191 PF00664 ABC transporter transmembrane region CH61_1911 PF00005 ABC transporter CH61_1911 PF03412 Peptidase C39 family CH61_1911 PF00664 ABC transporter transmembrane region CH61_1913 PF13533 Biotin-lipoyl like CH61_1914 PF00005 ABC transporter CH61_1914 PF03412 Peptidase C39 family CH61_1914 PF00664 ABC transporter transmembrane region CH61_1915 PF10754 Protein of unknown function (DUF2569) CH61_1916 PF02508 Rnf-Nqr subunit, membrane protein CH61_1917 PF04060 Putative Fe-S cluster CH61_1918 PF10531 SLBB domain CH61_1918 PF13237 4Fe-4S dicluster domain CH61_1918 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH61_1918 PF13375 RnfC Barrel sandwich hybrid domain CH61_1919 PF12833 Helix-turn-helix domain CH61_1919 PF06445 GyrI-like small molecule binding domain CH61_192 PF00529 HlyD membrane-fusion protein of T1SS CH61_1920 PF03116 NQR2, RnfD, RnfE family CH61_1921 PF04205 FMN-binding domain CH61_1922 PF02508 Rnf-Nqr subunit, membrane protein CH61_1923 PF10576 Iron-sulfur binding domain of endonuclease III CH61_1923 PF00633 Helix-hairpin-helix motif CH61_1923 PF00730 HhH-GPD superfamily base excision DNA repair protein CH61_1924 PF01370 NAD dependent epimerase/dehydratase family CH61_1925 PF07690 Major Facilitator Superfamily CH61_1926 PF17876 Cold shock domain CH61_1926 PF08206 Ribonuclease B OB domain CH61_1926 PF00575 S1 RNA binding domain CH61_1926 PF00773 RNB domain CH61_1927 PF13722 5TM C-terminal transporter carbon starvation CstA CH61_1927 PF02554 Carbon starvation protein CstA CH61_1928 PF04328 Selenoprotein, putative CH61_1929 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH61_193 PF03544 Gram-negative bacterial TonB protein C-terminal CH61_1931 PF00596 Class II Aldolase and Adducin N-terminal domain CH61_1932 PF05433 Glycine zipper 2TM domain CH61_1933 PF01253 Translation initiation factor SUI1 CH61_1934 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CH61_1936 PF18073 Rubredoxin metal binding domain CH61_1937 PF06305 Lipopolysaccharide assembly protein A domain CH61_1938 PF01569 PAP2 superfamily CH61_1939 PF00925 GTP cyclohydrolase II CH61_194 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH61_194 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH61_1940 PF00330 Aconitase family (aconitate hydratase) CH61_1940 PF00694 Aconitase C-terminal domain CH61_1942 PF03466 LysR substrate binding domain CH61_1942 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_1943 PF01396 Topoisomerase DNA binding C4 zinc finger CH61_1943 PF01131 DNA topoisomerase CH61_1943 PF08272 Topoisomerase I zinc-ribbon-like CH61_1943 PF01751 Toprim domain CH61_1945 PF10692 Protein of unknown function (DUF2498) CH61_1946 PF08496 Peptidase family S49 N-terminal CH61_1946 PF01343 Peptidase family S49 CH61_1947 PF00106 short chain dehydrogenase CH61_1948 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CH61_1949 PF01479 S4 domain CH61_1949 PF00849 RNA pseudouridylate synthase CH61_195 PF08534 Redoxin CH61_195 PF00462 Glutaredoxin CH61_1950 PF01300 Telomere recombination CH61_1951 PF02811 PHP domain CH61_1952 PF04715 Anthranilate synthase component I, N terminal region CH61_1952 PF00425 chorismate binding enzyme CH61_1953 PF00117 Glutamine amidotransferase class-I CH61_1954 PF00591 Glycosyl transferase family, a/b domain CH61_1954 PF02885 Glycosyl transferase family, helical bundle domain CH61_1955 PF00218 Indole-3-glycerol phosphate synthase CH61_1955 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CH61_1956 PF00291 Pyridoxal-phosphate dependent enzyme CH61_1957 PF00290 Tryptophan synthase alpha chain CH61_1959 PF03922 OmpW family CH61_196 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH61_196 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH61_1963 PF04279 Intracellular septation protein A CH61_1964 PF03061 Thioesterase superfamily CH61_1965 PF00872 Transposase, Mutator family CH61_1966 PF03544 Gram-negative bacterial TonB protein C-terminal CH61_1967 PF03795 YCII-related domain CH61_197 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_197 PF03466 LysR substrate binding domain CH61_1970 PF13505 Outer membrane protein beta-barrel domain CH61_1971 PF13396 Phospholipase_D-nuclease N-terminal CH61_1971 PF13091 PLD-like domain CH61_1972 PF04269 Protein of unknown function, DUF440 CH61_1974 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH61_1974 PF00005 ABC transporter CH61_1975 PF00005 ABC transporter CH61_1975 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH61_1976 PF12911 N-terminal TM domain of oligopeptide transport permease C CH61_1976 PF00528 Binding-protein-dependent transport system inner membrane component CH61_1977 PF00528 Binding-protein-dependent transport system inner membrane component CH61_1978 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH61_1979 PF01914 MarC family integral membrane protein CH61_1980 PF00465 Iron-containing alcohol dehydrogenase CH61_1980 PF00171 Aldehyde dehydrogenase family CH61_1981 PF02796 Helix-turn-helix domain of resolvase CH61_1981 PF00665 Integrase core domain CH61_1982 PF01695 IstB-like ATP binding protein CH61_1983 PF00265 Thymidine kinase CH61_1984 PF00816 H-NS histone family CH61_1985 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH61_1985 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH61_1985 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH61_1986 PF00072 Response regulator receiver domain CH61_1987 PF02810 SEC-C motif CH61_1988 PF00872 Transposase, Mutator family CH61_1989 PF00551 Formyl transferase CH61_1989 PF01842 ACT domain CH61_199 PF00440 Bacterial regulatory proteins, tetR family CH61_1990 PF00872 Transposase, Mutator family CH61_1993 PF03466 LysR substrate binding domain CH61_1993 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_1994 PF03372 Endonuclease/Exonuclease/phosphatase family CH61_1995 PF00293 NUDIX domain CH61_1996 PF07383 Protein of unknown function (DUF1496) CH61_1997 PF01131 DNA topoisomerase CH61_1997 PF01751 Toprim domain CH61_1998 PF02769 AIR synthase related protein, C-terminal domain CH61_1998 PF00586 AIR synthase related protein, N-terminal domain CH61_1999 PF00881 Nitroreductase family CH61_2 PF12631 MnmE helical domain CH61_2 PF10396 GTP-binding protein TrmE N-terminus CH61_2 PF01926 50S ribosome-binding GTPase CH61_20 PF07119 Protein of unknown function (DUF1375) CH61_200 PF07226 Protein of unknown function (DUF1422) CH61_2000 PF01343 Peptidase family S49 CH61_2001 PF17763 Glutaminase/Asparaginase C-terminal domain CH61_2001 PF00710 Asparaginase, N-terminal CH61_2002 PF00857 Isochorismatase family CH61_2003 PF07023 Protein of unknown function (DUF1315) CH61_2004 PF01641 SelR domain CH61_2005 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH61_2005 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH61_2006 PF01263 Aldose 1-epimerase CH61_2007 PF06629 MltA-interacting protein MipA CH61_2008 PF06798 PrkA serine protein kinase C-terminal domain CH61_2008 PF08298 PrkA AAA domain CH61_2009 PF04285 Protein of unknown function (DUF444) CH61_201 PF05958 tRNA (Uracil-5-)-methyltransferase CH61_2011 PF03466 LysR substrate binding domain CH61_2011 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_2012 PF02678 Pirin CH61_2012 PF05726 Pirin C-terminal cupin domain CH61_2013 PF07690 Major Facilitator Superfamily CH61_2014 PF01266 FAD dependent oxidoreductase CH61_2015 PF04293 SpoVR like protein CH61_2016 PF07840 FadR C-terminal domain CH61_2016 PF00392 Bacterial regulatory proteins, gntR family CH61_2017 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CH61_2018 PF02600 Disulfide bond formation protein DsbB CH61_202 PF07715 TonB-dependent Receptor Plug Domain CH61_202 PF00593 TonB dependent receptor CH61_2021 PF00266 Aminotransferase class-V CH61_2023 PF00872 Transposase, Mutator family CH61_2024 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CH61_203 PF01177 Asp/Glu/Hydantoin racemase CH61_2039 PF01797 Transposase IS200 like CH61_2056 PF00872 Transposase, Mutator family CH61_2069 PF06530 Phage antitermination protein Q CH61_2071 PF05772 NinB protein CH61_2074 PF01695 IstB-like ATP binding protein CH61_2076 PF02796 Helix-turn-helix domain of resolvase CH61_2076 PF00665 Integrase core domain CH61_2077 PF12167 Arm DNA-binding domain CH61_2077 PF00589 Phage integrase family CH61_2078 PF03692 Putative zinc- or iron-chelating domain CH61_2079 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH61_2080 PF13406 Transglycosylase SLT domain CH61_2081 PF05166 YcgL domain CH61_2082 PF03775 Septum formation inhibitor MinC, C-terminal domain CH61_2082 PF05209 Septum formation inhibitor MinC, N-terminal domain CH61_2083 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CH61_2084 PF03776 Septum formation topological specificity factor MinE CH61_2085 PF00570 HRDC domain CH61_2085 PF01612 3'-5' exonuclease CH61_2086 PF00501 AMP-binding enzyme CH61_2086 PF13193 AMP-binding enzyme C-terminal domain CH61_2087 PF03843 Outer membrane lipoprotein Slp family CH61_2088 PF00814 Glycoprotease family CH61_2089 PF04851 Type III restriction enzyme, res subunit CH61_2089 PF13307 Helicase C-terminal domain CH61_2090 PF01042 Endoribonuclease L-PSP CH61_2091 PF00893 Small Multidrug Resistance protein CH61_2092 PF00893 Small Multidrug Resistance protein CH61_2093 PF01081 KDPG and KHG aldolase CH61_2095 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CH61_2095 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CH61_2096 PF01418 Helix-turn-helix domain, rpiR family CH61_2096 PF01380 SIS domain CH61_2097 PF02887 Pyruvate kinase, alpha/beta domain CH61_2097 PF00224 Pyruvate kinase, barrel domain CH61_2098 PF03279 Bacterial lipid A biosynthesis acyltransferase CH61_2099 PF01551 Peptidase family M23 CH61_2099 PF08525 Opacity-associated protein A N-terminal motif CH61_2099 PF01476 LysM domain CH61_21 PF00011 Hsp20/alpha crystallin family CH61_210 PF13407 Periplasmic binding protein domain CH61_2100 PF01297 Zinc-uptake complex component A periplasmic CH61_2101 PF00005 ABC transporter CH61_2102 PF00950 ABC 3 transport family CH61_2103 PF17864 RuvB AAA lid domain CH61_2103 PF05491 RuvB C-terminal winged helix domain CH61_2103 PF05496 Holliday junction DNA helicase RuvB P-loop domain CH61_2104 PF07499 RuvA, C-terminal domain CH61_2104 PF01330 RuvA N terminal domain CH61_2105 PF02075 Crossover junction endodeoxyribonuclease RuvC CH61_2106 PF01709 Transcriptional regulator CH61_2107 PF00293 NUDIX domain CH61_2108 PF02938 GAD domain CH61_2108 PF01336 OB-fold nucleic acid binding domain CH61_2108 PF00152 tRNA synthetases class II (D, K and N) CH61_2109 PF01904 Protein of unknown function DUF72 CH61_211 PF00005 ABC transporter CH61_2110 PF01124 MAPEG family CH61_2111 PF13649 Methyltransferase domain CH61_2112 PF08003 Protein of unknown function (DUF1698) CH61_2113 PF03932 CutC family CH61_2114 PF06185 YecM protein CH61_2115 PF03485 Arginyl tRNA synthetase N terminal domain CH61_2115 PF00750 tRNA synthetases class I (R) CH61_2115 PF05746 DALR anticodon binding domain CH61_2116 PF13332 Hemagglutinin repeat CH61_2116 PF05860 haemagglutination activity domain CH61_2117 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH61_2117 PF08479 POTRA domain, ShlB-type CH61_2117 PF17287 POTRA domain CH61_2118 PF03023 Lipid II flippase MurJ CH61_2119 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH61_212 PF02653 Branched-chain amino acid transport system / permease component CH61_2120 PF13302 Acetyltransferase (GNAT) domain CH61_2121 PF07690 Major Facilitator Superfamily CH61_2122 PF07273 Protein of unknown function (DUF1439) CH61_2123 PF02613 Nitrate reductase delta subunit CH61_2124 PF02811 PHP domain CH61_2126 PF01325 Iron dependent repressor, N-terminal DNA binding domain CH61_2126 PF00480 ROK family CH61_2127 PF03009 Glycerophosphoryl diester phosphodiesterase family CH61_2128 PF00005 ABC transporter CH61_2128 PF08402 TOBE domain CH61_2129 PF01797 Transposase IS200 like CH61_213 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_213 PF03466 LysR substrate binding domain CH61_2130 PF08402 TOBE domain CH61_2130 PF00005 ABC transporter CH61_2131 PF00528 Binding-protein-dependent transport system inner membrane component CH61_2132 PF00528 Binding-protein-dependent transport system inner membrane component CH61_2134 PF03009 Glycerophosphoryl diester phosphodiesterase family CH61_2136 PF01740 STAS domain CH61_2136 PF00916 Sulfate permease family CH61_2137 PF02796 Helix-turn-helix domain of resolvase CH61_2137 PF00665 Integrase core domain CH61_2138 PF01695 IstB-like ATP binding protein CH61_2139 PF01740 STAS domain CH61_2139 PF00916 Sulfate permease family CH61_214 PF02653 Branched-chain amino acid transport system / permease component CH61_2140 PF01797 Transposase IS200 like CH61_2141 PF00793 DAHP synthetase I family CH61_2142 PF13369 Transglutaminase-like superfamily CH61_2143 PF04247 Invasion gene expression up-regulator, SirB CH61_2144 PF17827 PrmC N-terminal domain CH61_2144 PF13847 Methyltransferase domain CH61_2145 PF03462 PCRF domain CH61_2145 PF00472 RF-1 domain CH61_2146 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CH61_2146 PF01488 Shikimate / quinate 5-dehydrogenase CH61_2146 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CH61_2147 PF03550 Outer membrane lipoprotein LolB CH61_2148 PF08544 GHMP kinases C terminal CH61_2148 PF00288 GHMP kinases N terminal domain CH61_2149 PF14572 Phosphoribosyl synthetase-associated domain CH61_2149 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CH61_215 PF04219 Protein of unknown function, DUF CH61_2150 PF10762 Protein of unknown function (DUF2583) CH61_2151 PF01195 Peptidyl-tRNA hydrolase CH61_2152 PF06071 Protein of unknown function (DUF933) CH61_2152 PF01926 50S ribosome-binding GTPase CH61_216 PF13335 Magnesium chelatase, subunit ChlI C-terminal CH61_216 PF01078 Magnesium chelatase, subunit ChlI CH61_2161 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CH61_2162 PF00072 Response regulator receiver domain CH61_2162 PF00486 Transcriptional regulatory protein, C terminal CH61_2163 PF00672 HAMP domain CH61_2163 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_2163 PF00512 His Kinase A (phospho-acceptor) domain CH61_217 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH61_217 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH61_217 PF00205 Thiamine pyrophosphate enzyme, central domain CH61_2172 PF08242 Methyltransferase domain CH61_2177 PF00872 Transposase, Mutator family CH61_2186 PF01370 NAD dependent epimerase/dehydratase family CH61_2187 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH61_2187 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH61_2188 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH61_2188 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH61_219 PF01063 Amino-transferase class IV CH61_2190 PF05962 HutD CH61_2191 PF01979 Amidohydrolase family CH61_2192 PF00392 Bacterial regulatory proteins, gntR family CH61_2192 PF07702 UTRA domain CH61_2193 PF01979 Amidohydrolase family CH61_2196 PF01695 IstB-like ATP binding protein CH61_2198 PF02796 Helix-turn-helix domain of resolvase CH61_2198 PF00665 Integrase core domain CH61_2199 PF00267 Gram-negative porin CH61_22 PF00011 Hsp20/alpha crystallin family CH61_220 PF00920 Dehydratase family CH61_2200 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CH61_2201 PF04996 Succinylarginine dihydrolase CH61_2202 PF00171 Aldehyde dehydrogenase family CH61_2203 PF04958 Arginine N-succinyltransferase beta subunit CH61_2204 PF00202 Aminotransferase class-III CH61_2207 PF00155 Aminotransferase class I and II CH61_2207 PF00392 Bacterial regulatory proteins, gntR family CH61_2208 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CH61_2208 PF07730 Histidine kinase CH61_2208 PF00672 HAMP domain CH61_2208 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_2209 PF01699 Sodium/calcium exchanger protein CH61_221 PF00291 Pyridoxal-phosphate dependent enzyme CH61_221 PF00585 C-terminal regulatory domain of Threonine dehydratase CH61_2210 PF02562 PhoH-like protein CH61_2213 PF13994 PgaD-like protein CH61_2214 PF00535 Glycosyl transferase family 2 CH61_2215 PF01522 Polysaccharide deacetylase CH61_2215 PF14883 Hypothetical glycosyl hydrolase family 13 CH61_2217 PF00557 Metallopeptidase family M24 CH61_2218 PF09313 Domain of unknown function (DUF1971) CH61_2218 PF03848 Tellurite resistance protein TehB CH61_2220 PF00578 AhpC/TSA family CH61_2221 PF02687 FtsX-like permease family CH61_2221 PF12704 MacB-like periplasmic core domain CH61_2221 PF00005 ABC transporter CH61_2223 PF02687 FtsX-like permease family CH61_2223 PF12704 MacB-like periplasmic core domain CH61_2223 PF00005 ABC transporter CH61_2225 PF10634 Fe2+ transport protein CH61_2226 PF03239 Iron permease FTR1 family CH61_2228 PF04960 Glutaminase CH61_2229 PF08220 DeoR-like helix-turn-helix domain CH61_2229 PF00455 DeoR C terminal sensor domain CH61_2230 PF00324 Amino acid permease CH61_2231 PF00155 Aminotransferase class I and II CH61_2232 PF02508 Rnf-Nqr subunit, membrane protein CH61_2234 PF04909 Amidohydrolase CH61_2238 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_2238 PF03466 LysR substrate binding domain CH61_2239 PF03328 HpcH/HpaI aldolase/citrate lyase family CH61_2240 PF01575 MaoC like domain CH61_2241 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CH61_2241 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CH61_2243 PF00196 Bacterial regulatory proteins, luxR family CH61_2243 PF00072 Response regulator receiver domain CH61_2247 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH61_2247 PF02753 Pili assembly chaperone PapD, C-terminal domain CH61_2248 PF13953 PapC C-terminal domain CH61_2248 PF13954 PapC N-terminal domain CH61_2248 PF00577 Outer membrane usher protein CH61_2250 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH61_2250 PF02753 Pili assembly chaperone PapD, C-terminal domain CH61_2252 PF13356 Arm DNA-binding domain CH61_2252 PF00589 Phage integrase family CH61_2253 PF00425 chorismate binding enzyme CH61_2254 PF07690 Major Facilitator Superfamily CH61_2255 PF00005 ABC transporter CH61_2255 PF00664 ABC transporter transmembrane region CH61_2256 PF00664 ABC transporter transmembrane region CH61_2256 PF04954 Siderophore-interacting protein CH61_2256 PF08021 Siderophore-interacting FAD-binding domain CH61_2256 PF00005 ABC transporter CH61_2258 PF00668 Condensation domain CH61_2258 PF00550 Phosphopantetheine attachment site CH61_2258 PF00501 AMP-binding enzyme CH61_2258 PF08242 Methyltransferase domain CH61_2259 PF00550 Phosphopantetheine attachment site CH61_2259 PF00501 AMP-binding enzyme CH61_2259 PF00668 Condensation domain CH61_2259 PF08242 Methyltransferase domain CH61_2260 PF00668 Condensation domain CH61_2260 PF00698 Acyl transferase domain CH61_2260 PF16197 Ketoacyl-synthetase C-terminal extension CH61_2260 PF00550 Phosphopantetheine attachment site CH61_2260 PF02801 Beta-ketoacyl synthase, C-terminal domain CH61_2260 PF00109 Beta-ketoacyl synthase, N-terminal domain CH61_2262 PF00975 Thioesterase domain CH61_2263 PF13193 AMP-binding enzyme C-terminal domain CH61_2263 PF00501 AMP-binding enzyme CH61_2264 PF00593 TonB dependent receptor CH61_2264 PF07715 TonB-dependent Receptor Plug Domain CH61_2272 PF01695 IstB-like ATP binding protein CH61_2273 PF00665 Integrase core domain CH61_2273 PF02796 Helix-turn-helix domain of resolvase CH61_2276 PF00005 ABC transporter CH61_2276 PF08402 TOBE domain CH61_2277 PF00528 Binding-protein-dependent transport system inner membrane component CH61_2278 PF00528 Binding-protein-dependent transport system inner membrane component CH61_228 PF03466 LysR substrate binding domain CH61_228 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_2280 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH61_2280 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH61_2287 PF00872 Transposase, Mutator family CH61_2288 PF00872 Transposase, Mutator family CH61_229 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CH61_229 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CH61_23 PF06826 Predicted Permease Membrane Region CH61_23 PF02080 TrkA-C domain CH61_2300 PF05638 Type VI secretion system effector, Hcp CH61_2309 PF01066 CDP-alcohol phosphatidyltransferase CH61_2310 PF08459 UvrC Helix-hairpin-helix N-terminal CH61_2310 PF02151 UvrB/uvrC motif CH61_2310 PF01541 GIY-YIG catalytic domain CH61_2311 PF00072 Response regulator receiver domain CH61_2311 PF00196 Bacterial regulatory proteins, luxR family CH61_2312 PF10769 Protein of unknown function (DUF2594) CH61_2313 PF06942 GlpM protein CH61_2315 PF13505 Outer membrane protein beta-barrel domain CH61_2317 PF00324 Amino acid permease CH61_2318 PF01344 Kelch motif CH61_2319 PF03358 NADPH-dependent FMN reductase CH61_2320 PF04261 Dyp-type peroxidase family CH61_2321 PF09375 Imelysin CH61_2321 PF13473 Cupredoxin-like domain CH61_2322 PF03239 Iron permease FTR1 family CH61_2323 PF00474 Sodium:solute symporter family CH61_2325 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CH61_2325 PF00171 Aldehyde dehydrogenase family CH61_2325 PF01619 Proline dehydrogenase CH61_2325 PF14850 DNA-binding domain of Proline dehydrogenase CH61_233 PF01320 Colicin immunity protein / pyocin immunity protein CH61_2331 PF00291 Pyridoxal-phosphate dependent enzyme CH61_2332 PF02899 Phage integrase, N-terminal SAM-like domain CH61_2333 PF04542 Sigma-70 region 2 CH61_2333 PF04539 Sigma-70 region 3 CH61_2333 PF04545 Sigma-70, region 4 CH61_2334 PF00700 Bacterial flagellin C-terminal helical region CH61_2334 PF08884 Flagellin D3 domain CH61_2334 PF00669 Bacterial flagellin N-terminal helical region CH61_2335 PF07195 Flagellar hook-associated protein 2 C-terminus CH61_2335 PF07196 Flagellin hook IN motif CH61_2335 PF02465 Flagellar hook-associated protein 2 N-terminus CH61_2336 PF02561 Flagellar protein FliS CH61_2337 PF05400 Flagellar protein FliT CH61_2338 PF12833 Helix-turn-helix domain CH61_2339 PF02743 Cache domain CH61_2339 PF00211 Adenylate and Guanylate cyclase catalytic domain CH61_2339 PF00672 HAMP domain CH61_234 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH61_234 PF02753 Pili assembly chaperone PapD, C-terminal domain CH61_2340 PF01966 HD domain CH61_2341 PF00730 HhH-GPD superfamily base excision DNA repair protein CH61_2344 PF02049 Flagellar hook-basal body complex protein FliE CH61_2345 PF08345 Flagellar M-ring protein C-terminal CH61_2345 PF01514 Secretory protein of YscJ/FliF family CH61_2346 PF14841 FliG middle domain CH61_2346 PF01706 FliG C-terminal domain CH61_2346 PF14842 FliG N-terminal domain CH61_2347 PF02108 Flagellar assembly protein FliH CH61_2348 PF18269 T3SS EscN ATPase C-terminal domain CH61_2348 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH61_2349 PF02050 Flagellar FliJ protein CH61_2350 PF02120 Flagellar hook-length control protein FliK CH61_2351 PF03748 Flagellar basal body-associated protein FliL CH61_2352 PF02154 Flagellar motor switch protein FliM CH61_2352 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH61_2353 PF16973 Flagellar motor switch protein FliN N-terminal CH61_2353 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH61_2354 PF04347 Flagellar biosynthesis protein, FliO CH61_2355 PF00813 FliP family CH61_2356 PF01313 Bacterial export proteins, family 3 CH61_2357 PF01311 Bacterial export proteins, family 1 CH61_236 PF13954 PapC N-terminal domain CH61_236 PF13953 PapC C-terminal domain CH61_236 PF00577 Outer membrane usher protein CH61_2360 PF00294 pfkB family carbohydrate kinase CH61_2361 PF02653 Branched-chain amino acid transport system / permease component CH61_2362 PF00005 ABC transporter CH61_2363 PF13407 Periplasmic binding protein domain CH61_2364 PF02653 Branched-chain amino acid transport system / permease component CH61_2365 PF00596 Class II Aldolase and Adducin N-terminal domain CH61_2366 PF04198 Putative sugar-binding domain CH61_2367 PF00669 Bacterial flagellin N-terminal helical region CH61_2368 PF00460 Flagella basal body rod protein CH61_2368 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH61_2369 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CH61_2369 PF10135 Rod binding protein CH61_237 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH61_237 PF02753 Pili assembly chaperone PapD, C-terminal domain CH61_2370 PF02119 Flagellar P-ring protein CH61_2371 PF02107 Flagellar L-ring protein CH61_2372 PF00460 Flagella basal body rod protein CH61_2372 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH61_2373 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH61_2373 PF00460 Flagella basal body rod protein CH61_2374 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH61_2374 PF00460 Flagella basal body rod protein CH61_2374 PF07559 Flagellar basal body protein FlaE CH61_2375 PF13861 FlgD Tudor-like domain CH61_2375 PF03963 Flagellar hook capping protein - N-terminal region CH61_2375 PF13860 FlgD Ig-like domain CH61_2376 PF00460 Flagella basal body rod protein CH61_2376 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH61_2377 PF00460 Flagella basal body rod protein CH61_2378 PF13144 Chaperone for flagella basal body P-ring formation CH61_2378 PF17656 FlgA N-terminal domain CH61_2379 PF04316 Anti-sigma-28 factor, FlgM CH61_2380 PF05130 FlgN protein CH61_2381 PF02369 Bacterial Ig-like domain (group 1) CH61_2381 PF11924 Inverse autotransporter, beta-domain CH61_2381 PF09134 Invasin, domain 3 CH61_2381 PF07979 Intimin C-type lectin domain CH61_2382 PF01797 Transposase IS200 like CH61_2383 PF09134 Invasin, domain 3 CH61_2383 PF11924 Inverse autotransporter, beta-domain CH61_2383 PF07979 Intimin C-type lectin domain CH61_2383 PF02369 Bacterial Ig-like domain (group 1) CH61_2384 PF06366 Flagellar protein FlhE CH61_2385 PF00771 FHIPEP family CH61_2386 PF01312 FlhB HrpN YscU SpaS Family CH61_2389 PF10709 Protein of unknown function (DUF2511) CH61_239 PF00872 Transposase, Mutator family CH61_2391 PF04234 CopC domain CH61_2392 PF00210 Ferritin-like domain CH61_2393 PF06440 DNA polymerase III, theta subunit CH61_2394 PF00561 alpha/beta hydrolase fold CH61_2395 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CH61_2395 PF00326 Prolyl oligopeptidase family CH61_2396 PF13995 YebF-like protein CH61_2398 PF07130 YebG protein CH61_2399 PF00271 Helicase conserved C-terminal domain CH61_2399 PF00270 DEAD/DEAH box helicase CH61_2399 PF03880 DbpA RNA binding domain CH61_24 PF00155 Aminotransferase class I and II CH61_2400 PF02222 ATP-grasp domain CH61_2401 PF03701 Uncharacterised protein family (UPF0181) CH61_2402 PF00425 chorismate binding enzyme CH61_2402 PF04715 Anthranilate synthase component I, N terminal region CH61_2403 PF00293 NUDIX domain CH61_2404 PF03315 Serine dehydratase beta chain CH61_2404 PF03313 Serine dehydratase alpha chain CH61_2405 PF01613 Flavin reductase like domain CH61_2406 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal CH61_2406 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal CH61_2407 PF07690 Major Facilitator Superfamily CH61_2408 PF03328 HpcH/HpaI aldolase/citrate lyase family CH61_2409 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH61_2410 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase CH61_2411 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH61_2412 PF00171 Aldehyde dehydrogenase family CH61_2413 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH61_2414 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH61_2415 PF01047 MarR family CH61_2416 PF03471 Transporter associated domain CH61_2416 PF03741 Integral membrane protein TerC family CH61_2417 PF03610 PTS system fructose IIA component CH61_2417 PF03830 PTS system sorbose subfamily IIB component CH61_2418 PF03609 PTS system sorbose-specific iic component CH61_2419 PF03613 PTS system mannose/fructose/sorbose family IID component CH61_242 PF13361 UvrD-like helicase C-terminal domain CH61_242 PF00580 UvrD/REP helicase N-terminal domain CH61_2420 PF06173 Protein of unknown function (DUF986) CH61_2421 PF02659 Putative manganese efflux pump CH61_2422 PF07715 TonB-dependent Receptor Plug Domain CH61_2422 PF00593 TonB dependent receptor CH61_2423 PF00563 EAL domain CH61_2423 PF08447 PAS fold CH61_2423 PF13426 PAS domain CH61_2423 PF08448 PAS fold CH61_2423 PF00990 Diguanylate cyclase, GGDEF domain CH61_2423 PF05231 MASE1 CH61_2425 PF13847 Methyltransferase domain CH61_2427 PF00313 'Cold-shock' DNA-binding domain CH61_2429 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP CH61_2430 PF00324 Amino acid permease CH61_2433 PF13974 YebO-like protein CH61_2434 PF13996 YobH-like protein CH61_2435 PF10964 Protein of unknown function (DUF2766) CH61_2437 PF12833 Helix-turn-helix domain CH61_2439 PF00664 ABC transporter transmembrane region CH61_2439 PF00005 ABC transporter CH61_2442 PF06167 Glucose-regulated metallo-peptidase M90 CH61_2444 PF00356 Bacterial regulatory proteins, lacI family CH61_2444 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH61_2445 PF01695 IstB-like ATP binding protein CH61_2446 PF00665 Integrase core domain CH61_2446 PF02796 Helix-turn-helix domain of resolvase CH61_2447 PF02796 Helix-turn-helix domain of resolvase CH61_2447 PF00665 Integrase core domain CH61_2448 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH61_2448 PF00356 Bacterial regulatory proteins, lacI family CH61_2449 PF00872 Transposase, Mutator family CH61_245 PF00271 Helicase conserved C-terminal domain CH61_245 PF00270 DEAD/DEAH box helicase CH61_2450 PF07883 Cupin domain CH61_2451 PF04962 KduI/IolB family CH61_2453 PF06917 Periplasmic pectate lyase CH61_2454 PF00528 Binding-protein-dependent transport system inner membrane component CH61_2455 PF00528 Binding-protein-dependent transport system inner membrane component CH61_2456 PF00005 ABC transporter CH61_2456 PF17912 MalK OB fold domain CH61_2456 PF03459 TOBE domain CH61_2457 PF01547 Bacterial extracellular solute-binding protein CH61_2458 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH61_2459 PF04307 LexA-binding, inner membrane-associated putative hydrolase CH61_246 PF00085 Thioredoxin CH61_2461 PF01510 N-acetylmuramoyl-L-alanine amidase CH61_2462 PF01614 Bacterial transcriptional regulator CH61_2462 PF09339 IclR helix-turn-helix domain CH61_2463 PF14583 Oligogalacturonate lyase CH61_2464 PF07690 Major Facilitator Superfamily CH61_2465 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH61_2465 PF02753 Pili assembly chaperone PapD, C-terminal domain CH61_2467 PF00577 Outer membrane usher protein CH61_2467 PF13954 PapC N-terminal domain CH61_2467 PF13953 PapC C-terminal domain CH61_2468 PF02753 Pili assembly chaperone PapD, C-terminal domain CH61_2468 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH61_2469 PF00419 Fimbrial protein CH61_247 PF07497 Rho termination factor, RNA-binding domain CH61_247 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH61_247 PF07498 Rho termination factor, N-terminal domain CH61_2470 PF01435 Peptidase family M48 CH61_2472 PF17804 Tail specific protease N-terminal domain CH61_2472 PF00595 PDZ domain CH61_2472 PF11818 C-terminal domain of tail specific protease (DUF3340) CH61_2472 PF03572 Peptidase family S41 CH61_2473 PF04352 ProQ/FINO family CH61_2473 PF17516 ProQ C-terminal domain CH61_2474 PF13185 GAF domain CH61_2475 PF04403 Paraquat-inducible protein A CH61_2476 PF02470 MlaD protein CH61_248 PF00953 Glycosyl transferase family 4 CH61_2480 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH61_2480 PF02753 Pili assembly chaperone PapD, C-terminal domain CH61_2483 PF07351 Protein of unknown function (DUF1480) CH61_2485 PF02796 Helix-turn-helix domain of resolvase CH61_2485 PF00665 Integrase core domain CH61_2486 PF01695 IstB-like ATP binding protein CH61_249 PF02706 Chain length determinant protein CH61_2492 PF01168 Alanine racemase, N-terminal domain CH61_2492 PF00842 Alanine racemase, C-terminal domain CH61_2495 PF05658 Head domain of trimeric autotransporter adhesin CH61_2495 PF05662 Coiled stalk of trimeric autotransporter adhesin CH61_2495 PF13018 Extended Signal Peptide of Type V secretion system CH61_2495 PF03895 YadA-like membrane anchor domain CH61_2496 PF05662 Coiled stalk of trimeric autotransporter adhesin CH61_2496 PF03895 YadA-like membrane anchor domain CH61_2496 PF13018 Extended Signal Peptide of Type V secretion system CH61_2496 PF05658 Head domain of trimeric autotransporter adhesin CH61_2497 PF01510 N-acetylmuramoyl-L-alanine amidase CH61_2498 PF04344 Chemotaxis phosphatase, CheZ CH61_2499 PF00072 Response regulator receiver domain CH61_250 PF02350 UDP-N-acetylglucosamine 2-epimerase CH61_2500 PF00072 Response regulator receiver domain CH61_2500 PF01339 CheB methylesterase CH61_2501 PF03705 CheR methyltransferase, all-alpha domain CH61_2501 PF01739 CheR methyltransferase, SAM binding domain CH61_2504 PF02203 Tar ligand binding domain homologue CH61_2504 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH61_2504 PF00672 HAMP domain CH61_2507 PF12951 Passenger-associated-transport-repeat CH61_2508 PF13309 HTH domain CH61_2508 PF08348 YheO-like PAS domain CH61_251 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH61_251 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH61_251 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH61_2510 PF01042 Endoribonuclease L-PSP CH61_2511 PF07690 Major Facilitator Superfamily CH61_2512 PF01584 CheW-like domain CH61_2513 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_2513 PF01627 Hpt domain CH61_2513 PF01584 CheW-like domain CH61_2513 PF02895 Signal transducing histidine kinase, homodimeric domain CH61_2513 PF09078 CheY binding CH61_2514 PF00691 OmpA family CH61_2514 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH61_2515 PF01618 MotA/TolQ/ExbB proton channel family CH61_2516 PF05280 Flagellar transcriptional activator (FlhC) CH61_2517 PF05247 Flagellar transcriptional activator (FlhD) CH61_2518 PF00690 Cation transporter/ATPase, N-terminus CH61_2518 PF00689 Cation transporting ATPase, C-terminus CH61_2519 PF02308 MgtC family CH61_252 PF16363 GDP-mannose 4,6 dehydratase CH61_2520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH61_2520 PF02203 Tar ligand binding domain homologue CH61_2520 PF00672 HAMP domain CH61_2521 PF00672 HAMP domain CH61_2521 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH61_2521 PF02203 Tar ligand binding domain homologue CH61_2522 PF10781 Dextransucrase DSRB CH61_2523 PF00313 'Cold-shock' DNA-binding domain CH61_2524 PF16353 Domain of unknown function(DUF4981) CH61_2524 PF02837 Glycosyl hydrolases family 2, sugar binding domain CH61_2524 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CH61_2524 PF02929 Beta galactosidase small chain CH61_2524 PF00703 Glycosyl hydrolases family 2 CH61_2525 PF00550 Phosphopantetheine attachment site CH61_2525 PF08240 Alcohol dehydrogenase GroES-like domain CH61_2525 PF00698 Acyl transferase domain CH61_2525 PF00107 Zinc-binding dehydrogenase CH61_2525 PF16197 Ketoacyl-synthetase C-terminal extension CH61_2525 PF14765 Polyketide synthase dehydratase CH61_2525 PF00109 Beta-ketoacyl synthase, N-terminal domain CH61_2525 PF02801 Beta-ketoacyl synthase, C-terminal domain CH61_2525 PF08659 KR domain CH61_2526 PF10777 Inner membrane protein YlaC CH61_2527 PF01037 Lrp/AsnC ligand binding domain CH61_2527 PF13404 AsnC-type helix-turn-helix domain CH61_2529 PF14001 YdfZ protein CH61_253 PF00483 Nucleotidyl transferase CH61_2530 PF00328 Histidine phosphatase superfamily (branch 2) CH61_2532 PF01638 HxlR-like helix-turn-helix CH61_2533 PF05368 NmrA-like family CH61_2534 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH61_2534 PF08447 PAS fold CH61_2536 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH61_2536 PF00356 Bacterial regulatory proteins, lacI family CH61_2537 PF00180 Isocitrate/isopropylmalate dehydrogenase CH61_2538 PF00849 RNA pseudouridylate synthase CH61_2539 PF00293 NUDIX domain CH61_2541 PF04356 Protein of unknown function (DUF489) CH61_2542 PF00206 Lyase CH61_2542 PF08328 Adenylosuccinate lyase C-terminal CH61_2544 PF00072 Response regulator receiver domain CH61_2544 PF00486 Transcriptional regulatory protein, C terminal CH61_2545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_2545 PF08918 PhoQ Sensor CH61_2546 PF08007 Cupin superfamily protein CH61_2547 PF01546 Peptidase family M20/M25/M40 CH61_2547 PF07687 Peptidase dimerisation domain CH61_2548 PF02146 Sir2 family CH61_2549 PF00480 ROK family CH61_255 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH61_2550 PF02687 FtsX-like permease family CH61_2550 PF12704 MacB-like periplasmic core domain CH61_2551 PF00005 ABC transporter CH61_2552 PF02687 FtsX-like permease family CH61_2552 PF12704 MacB-like periplasmic core domain CH61_2553 PF02559 CarD-like/TRCF domain CH61_2553 PF00271 Helicase conserved C-terminal domain CH61_2553 PF03461 TRCF domain CH61_2553 PF17757 UvrB interaction domain CH61_2553 PF00270 DEAD/DEAH box helicase CH61_2554 PF05433 Glycine zipper 2TM domain CH61_2555 PF00665 Integrase core domain CH61_2555 PF02796 Helix-turn-helix domain of resolvase CH61_2556 PF01695 IstB-like ATP binding protein CH61_2557 PF00872 Transposase, Mutator family CH61_256 PF01943 Polysaccharide biosynthesis protein CH61_2560 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH61_2561 PF05728 Uncharacterised protein family (UPF0227) CH61_2562 PF00933 Glycosyl hydrolase family 3 N terminal domain CH61_2563 PF01636 Phosphotransferase enzyme family CH61_2564 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH61_2564 PF13036 Peptidoglycan-synthase activator LpoB CH61_2565 PF07233 Protein of unknown function (DUF1425) CH61_2566 PF01230 HIT domain CH61_2567 PF08501 Shikimate dehydrogenase substrate binding domain CH61_2568 PF01797 Transposase IS200 like CH61_2569 PF02378 Phosphotransferase system, EIIC CH61_2569 PF00367 phosphotransferase system, EIIB CH61_257 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 CH61_2570 PF01026 TatD related DNase CH61_2571 PF09115 DNA polymerase III, delta subunit, C terminal CH61_2572 PF02223 Thymidylate kinase CH61_2573 PF02618 YceG-like family CH61_2574 PF01063 Amino-transferase class IV CH61_2575 PF01797 Transposase IS200 like CH61_2577 PF00109 Beta-ketoacyl synthase, N-terminal domain CH61_2577 PF02801 Beta-ketoacyl synthase, C-terminal domain CH61_2578 PF00550 Phosphopantetheine attachment site CH61_258 PF06899 WzyE protein, O-antigen assembly polymerase CH61_2580 PF00698 Acyl transferase domain CH61_2581 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH61_2581 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH61_2582 PF02504 Fatty acid synthesis protein CH61_2583 PF01783 Ribosomal L32p protein family CH61_2584 PF02620 Large ribosomal RNA subunit accumulation protein YceD CH61_2585 PF02545 Maf-like protein CH61_2586 PF01797 Transposase IS200 like CH61_2587 PF00849 RNA pseudouridylate synthase CH61_2587 PF01479 S4 domain CH61_2588 PF12111 Polyribonucleotide phosphorylase C terminal CH61_2588 PF10150 Ribonuclease E/G family CH61_2588 PF00575 S1 RNA binding domain CH61_2589 PF00872 Transposase, Mutator family CH61_259 PF03808 Glycosyl transferase WecB/TagA/CpsF family CH61_2590 PF03992 Antibiotic biosynthesis monooxygenase CH61_2591 PF01979 Amidohydrolase family CH61_2592 PF06183 DinI-like family CH61_2593 PF00872 Transposase, Mutator family CH61_2594 PF13991 BssS protein family CH61_2596 PF01306 LacY proton/sugar symporter CH61_2597 PF16874 Glycosyl hydrolase family 36 C-terminal domain CH61_2597 PF16875 Glycosyl hydrolase family 36 N-terminal domain CH61_26 PF00128 Alpha amylase, catalytic domain CH61_260 PF00324 Amino acid permease CH61_2600 PF01648 4'-phosphopantetheinyl transferase superfamily CH61_2600 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CH61_2601 PF03480 Bacterial extracellular solute-binding protein, family 7 CH61_2603 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH61_2604 PF00072 Response regulator receiver domain CH61_2604 PF00196 Bacterial regulatory proteins, luxR family CH61_2606 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CH61_2608 PF01522 Polysaccharide deacetylase CH61_2610 PF01554 MatE CH61_2611 PF00764 Arginosuccinate synthase CH61_2612 PF01070 FMN-dependent dehydrogenase CH61_2614 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH61_2614 PF13378 Enolase C-terminal domain-like CH61_2615 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH61_2617 PF04134 Protein of unknown function, DUF393 CH61_2618 PF07690 Major Facilitator Superfamily CH61_2619 PF00872 Transposase, Mutator family CH61_2620 PF11924 Inverse autotransporter, beta-domain CH61_2620 PF02369 Bacterial Ig-like domain (group 1) CH61_2620 PF09134 Invasin, domain 3 CH61_2621 PF04363 Protein of unknown function (DUF496) CH61_2623 PF00929 Exonuclease CH61_2623 PF08411 Exonuclease C-terminal CH61_2624 PF13520 Amino acid permease CH61_2626 PF00465 Iron-containing alcohol dehydrogenase CH61_2627 PF00005 ABC transporter CH61_2628 PF00005 ABC transporter CH61_2629 PF02653 Branched-chain amino acid transport system / permease component CH61_2631 PF01370 NAD dependent epimerase/dehydratase family CH61_2632 PF01634 ATP phosphoribosyltransferase CH61_2632 PF08029 HisG, C-terminal domain CH61_2633 PF00815 Histidinol dehydrogenase CH61_2634 PF00155 Aminotransferase class I and II CH61_2635 PF00475 Imidazoleglycerol-phosphate dehydratase CH61_2636 PF00117 Glutamine amidotransferase class-I CH61_2637 PF00977 Histidine biosynthesis protein CH61_2638 PF00977 Histidine biosynthesis protein CH61_2639 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CH61_2639 PF01502 Phosphoribosyl-AMP cyclohydrolase CH61_2640 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH61_2640 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CH61_2641 PF00483 Nucleotidyl transferase CH61_2642 PF00483 Nucleotidyl transferase CH61_2643 PF06276 Ferric iron reductase FhuF-like transporter CH61_2643 PF04183 IucA / IucC family CH61_2644 PF07715 TonB-dependent Receptor Plug Domain CH61_2644 PF00593 TonB dependent receptor CH61_2644 PF07660 Secretin and TonB N terminus short domain CH61_2645 PF01497 Periplasmic binding protein CH61_2646 PF01032 FecCD transport family CH61_2647 PF01032 FecCD transport family CH61_2648 PF00005 ABC transporter CH61_2649 PF04183 IucA / IucC family CH61_2649 PF06276 Ferric iron reductase FhuF-like transporter CH61_2651 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CH61_2652 PF00282 Pyridoxal-dependent decarboxylase conserved domain CH61_2653 PF11575 FhuF 2Fe-2S C-terminal domain CH61_2653 PF06276 Ferric iron reductase FhuF-like transporter CH61_2654 PF03471 Transporter associated domain CH61_2654 PF03741 Integral membrane protein TerC family CH61_2654 PF00571 CBS domain CH61_2655 PF05170 AsmA family CH61_2656 PF00692 dUTPase CH61_2657 PF00485 Phosphoribulokinase / Uridine kinase family CH61_2658 PF10609 NUBPL iron-transfer P-loop NTPase CH61_2659 PF09334 tRNA synthetases class I (M) CH61_2659 PF01588 Putative tRNA binding domain CH61_2660 PF01797 Transposase IS200 like CH61_2661 PF00665 Integrase core domain CH61_2661 PF02796 Helix-turn-helix domain of resolvase CH61_2662 PF01695 IstB-like ATP binding protein CH61_2667 PF07690 Major Facilitator Superfamily CH61_2668 PF03788 LrgA family CH61_2669 PF04172 LrgB-like family CH61_267 PF07219 HemY protein N-terminus CH61_267 PF07719 Tetratricopeptide repeat CH61_2670 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CH61_2670 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH61_2671 PF00390 Malic enzyme, N-terminal domain CH61_2671 PF03949 Malic enzyme, NAD binding domain CH61_2672 PF02698 DUF218 domain CH61_2673 PF02653 Branched-chain amino acid transport system / permease component CH61_2674 PF00005 ABC transporter CH61_2675 PF13407 Periplasmic binding protein domain CH61_2676 PF04235 Protein of unknown function (DUF418) CH61_2677 PF01227 GTP cyclohydrolase I CH61_2678 PF06779 Uncharacterised MFS-type transporter YbfB CH61_2679 PF03466 LysR substrate binding domain CH61_2679 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_268 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CH61_2680 PF08240 Alcohol dehydrogenase GroES-like domain CH61_2680 PF00107 Zinc-binding dehydrogenase CH61_2681 PF00756 Putative esterase CH61_2684 PF13533 Biotin-lipoyl like CH61_2685 PF00005 ABC transporter CH61_2687 PF03453 MoeA N-terminal region (domain I and II) CH61_2687 PF03454 MoeA C-terminal region (domain IV) CH61_2687 PF00994 Probable molybdopterin binding domain CH61_2688 PF00899 ThiF family CH61_2689 PF00872 Transposase, Mutator family CH61_269 PF02602 Uroporphyrinogen-III synthase HemD CH61_2691 PF00005 ABC transporter CH61_2691 PF12848 ABC transporter CH61_27 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH61_27 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH61_270 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CH61_270 PF03900 Porphobilinogen deaminase, C-terminal domain CH61_271 PF01295 Adenylate cyclase, class-I CH61_271 PF12633 Adenylate cyclase NT domain CH61_2710 PF00004 ATPase family associated with various cellular activities (AAA) CH61_2710 PF10431 C-terminal, D2-small domain, of ClpB protein CH61_2710 PF17871 AAA lid domain CH61_2710 PF07724 AAA domain (Cdc48 subfamily) CH61_2712 PF05736 OprF membrane domain CH61_2712 PF00691 OmpA family CH61_2718 PF00698 Acyl transferase domain CH61_2719 PF00550 Phosphopantetheine attachment site CH61_272 PF01491 Frataxin-like domain CH61_2722 PF00378 Enoyl-CoA hydratase/isomerase CH61_2724 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal CH61_2724 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal CH61_2726 PF00109 Beta-ketoacyl synthase, N-terminal domain CH61_2726 PF02801 Beta-ketoacyl synthase, C-terminal domain CH61_2727 PF07977 FabA-like domain CH61_273 PF13627 Prokaryotic lipoprotein-attachment site CH61_2730 PF01565 FAD binding domain CH61_2730 PF08031 Berberine and berberine like CH61_2734 PF13610 DDE domain CH61_2736 PF04358 DsrC like protein CH61_2737 PF00708 Acylphosphatase CH61_2738 PF17785 PUA-like domain CH61_2738 PF10672 S-adenosylmethionine-dependent methyltransferase CH61_2739 PF08755 Hemimethylated DNA-binding protein YccV like CH61_274 PF01678 Diaminopimelate epimerase CH61_2740 PF13380 CoA binding domain CH61_2741 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CH61_2742 PF02142 MGS-like domain CH61_2743 PF00580 UvrD/REP helicase N-terminal domain CH61_2743 PF13361 UvrD-like helicase C-terminal domain CH61_2743 PF12462 DNA helicase IV / RNA helicase N terminal CH61_2744 PF03733 Inner membrane component domain CH61_2745 PF12805 FUSC-like inner membrane protein yccS CH61_2746 PF04994 TfoX C-terminal domain CH61_2746 PF04993 TfoX N-terminal domain CH61_2747 PF03846 Cell division inhibitor SulA CH61_2748 PF01389 OmpA-like transmembrane domain CH61_2748 PF00691 OmpA family CH61_2749 PF01797 Transposase IS200 like CH61_275 PF04340 Protein of unknown function, DUF484 CH61_2750 PF06303 MatP N-terminal domain CH61_2750 PF17414 MatP C-terminal ribbon-helix-helix domain CH61_2751 PF13654 AAA domain CH61_2751 PF05362 Lon protease (S16) C-terminal proteolytic domain CH61_2752 PF07977 FabA-like domain CH61_2754 PF02801 Beta-ketoacyl synthase, C-terminal domain CH61_2754 PF00109 Beta-ketoacyl synthase, N-terminal domain CH61_2755 PF00665 Integrase core domain CH61_2755 PF02796 Helix-turn-helix domain of resolvase CH61_2758 PF01695 IstB-like ATP binding protein CH61_2759 PF02801 Beta-ketoacyl synthase, C-terminal domain CH61_2759 PF00109 Beta-ketoacyl synthase, N-terminal domain CH61_276 PF00589 Phage integrase family CH61_276 PF02899 Phage integrase, N-terminal SAM-like domain CH61_2760 PF01797 Transposase IS200 like CH61_2761 PF03886 ABC-type transport auxiliary lipoprotein component CH61_2762 PF02470 MlaD protein CH61_2763 PF04403 Paraquat-inducible protein A CH61_2764 PF00005 ABC transporter CH61_2764 PF12848 ABC transporter CH61_2764 PF16326 ABC transporter C-terminal domain CH61_2765 PF10672 S-adenosylmethionine-dependent methyltransferase CH61_2765 PF01170 Putative RNA methylase family UPF0020 CH61_2765 PF02926 THUMP domain CH61_2766 PF00111 2Fe-2S iron-sulfur cluster binding domain CH61_2766 PF03473 MOSC domain CH61_2766 PF03476 MOSC N-terminal beta barrel domain CH61_2767 PF07126 Cell-division protein ZapC CH61_2768 PF01180 Dihydroorotate dehydrogenase CH61_2769 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CH61_2769 PF11940 Domain of unknown function (DUF3458) Ig-like fold CH61_2769 PF01433 Peptidase family M1 domain CH61_277 PF13419 Haloacid dehalogenase-like hydrolase CH61_2770 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CH61_2770 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CH61_2771 PF00152 tRNA synthetases class II (D, K and N) CH61_2771 PF01336 OB-fold nucleic acid binding domain CH61_2772 PF00267 Gram-negative porin CH61_2773 PF01797 Transposase IS200 like CH61_2774 PF00155 Aminotransferase class I and II CH61_2775 PF00753 Metallo-beta-lactamase superfamily CH61_2776 PF05951 Bacterial protein of unknown function (DUF882) CH61_2777 PF01471 Putative peptidoglycan binding domain CH61_2777 PF03734 L,D-transpeptidase catalytic domain CH61_2778 PF01797 Transposase IS200 like CH61_2779 PF16330 MukB hinge domain CH61_2779 PF04310 MukB N-terminal CH61_278 PF00580 UvrD/REP helicase N-terminal domain CH61_278 PF13361 UvrD-like helicase C-terminal domain CH61_2780 PF04288 MukE-like family CH61_2781 PF03882 MukF winged-helix domain CH61_2781 PF17193 MukF C-terminal domain CH61_2781 PF17192 MukF middle domain CH61_2783 PF01636 Phosphotransferase enzyme family CH61_2784 PF02348 Cytidylyltransferase CH61_2785 PF03966 Trm112p-like protein CH61_2786 PF00313 'Cold-shock' DNA-binding domain CH61_2787 PF07063 Domain of unknown function (DUF1338) CH61_2788 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CH61_2789 PF00005 ABC transporter CH61_2789 PF00664 ABC transporter transmembrane region CH61_2790 PF00753 Metallo-beta-lactamase superfamily CH61_2790 PF03772 Competence protein CH61_2791 PF00216 Bacterial DNA-binding protein CH61_2793 PF00575 S1 RNA binding domain CH61_2794 PF02224 Cytidylate kinase CH61_2795 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH61_2796 PF00266 Aminotransferase class-V CH61_2798 PF13018 Extended Signal Peptide of Type V secretion system CH61_2798 PF03895 YadA-like membrane anchor domain CH61_2798 PF05658 Head domain of trimeric autotransporter adhesin CH61_2798 PF13018 Extended Signal Peptide of Type V secretion system CH61_2798 PF03895 YadA-like membrane anchor domain CH61_2798 PF05662 Coiled stalk of trimeric autotransporter adhesin CH61_2798 PF05662 Coiled stalk of trimeric autotransporter adhesin CH61_2798 PF05658 Head domain of trimeric autotransporter adhesin CH61_2799 PF17763 Glutaminase/Asparaginase C-terminal domain CH61_2799 PF00710 Asparaginase, N-terminal CH61_2800 PF18381 YcaO cyclodehydratase C-terminal domain CH61_2800 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CH61_2801 PF01226 Formate/nitrite transporter CH61_2802 PF02901 Pyruvate formate lyase-like CH61_2802 PF01228 Glycine radical CH61_2804 PF04055 Radical SAM superfamily CH61_2805 PF07690 Major Facilitator Superfamily CH61_2806 PF02403 Seryl-tRNA synthetase N-terminal domain CH61_2806 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH61_2807 PF00004 ATPase family associated with various cellular activities (AAA) CH61_2807 PF16193 AAA C-terminal domain CH61_2807 PF12002 MgsA AAA+ ATPase C terminal CH61_2809 PF03548 Outer membrane lipoprotein carrier protein LolA CH61_281 PF09370 Phosphoenolpyruvate hydrolase-like CH61_2810 PF17854 FtsK alpha domain CH61_2810 PF09397 Ftsk gamma domain CH61_2810 PF01580 FtsK/SpoIIIE family CH61_2810 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CH61_2811 PF01037 Lrp/AsnC ligand binding domain CH61_2812 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH61_2813 PF00664 ABC transporter transmembrane region CH61_2813 PF00005 ABC transporter CH61_2814 PF00005 ABC transporter CH61_2814 PF00664 ABC transporter transmembrane region CH61_2815 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CH61_2816 PF01176 Translation initiation factor 1A / IF-1 CH61_2817 PF01797 Transposase IS200 like CH61_2818 PF10431 C-terminal, D2-small domain, of ClpB protein CH61_2818 PF02861 Clp amino terminal domain, pathogenicity island component CH61_2818 PF17871 AAA lid domain CH61_2818 PF00004 ATPase family associated with various cellular activities (AAA) CH61_2818 PF07724 AAA domain (Cdc48 subfamily) CH61_2819 PF02617 ATP-dependent Clp protease adaptor protein ClpS CH61_282 PF01544 CorA-like Mg2+ transporter protein CH61_2820 PF00313 'Cold-shock' DNA-binding domain CH61_2821 PF00005 ABC transporter CH61_2821 PF02687 FtsX-like permease family CH61_2821 PF12704 MacB-like periplasmic core domain CH61_2822 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH61_2823 PF04393 Protein of unknown function (DUF535) CH61_2824 PF11398 Protein of unknown function (DUF2813) CH61_2825 PF03956 Lysine exporter LysO CH61_2826 PF03063 Prismane/CO dehydrogenase family CH61_2827 PF00970 Oxidoreductase FAD-binding domain CH61_2827 PF00111 2Fe-2S iron-sulfur cluster binding domain CH61_2827 PF00175 Oxidoreductase NAD-binding domain CH61_2828 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH61_2828 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH61_2828 PF00205 Thiamine pyrophosphate enzyme, central domain CH61_2829 PF01212 Beta-eliminating lyase CH61_283 PF00892 EamA-like transporter family CH61_2830 PF11066 Protein of unknown function (DUF2867) CH61_2830 PF13460 NAD(P)H-binding CH61_2831 PF01370 NAD dependent epimerase/dehydratase family CH61_2832 PF12883 Protein of unknown function (DUF3828) CH61_2833 PF01817 Chorismate mutase type II CH61_2834 PF00005 ABC transporter CH61_2835 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH61_2836 PF00528 Binding-protein-dependent transport system inner membrane component CH61_2837 PF00528 Binding-protein-dependent transport system inner membrane component CH61_2838 PF00892 EamA-like transporter family CH61_2839 PF10100 Staphylopine dehydrogenase CH61_284 PF03061 Thioesterase superfamily CH61_2840 PF03059 Nicotianamine synthase protein CH61_2841 PF00005 ABC transporter CH61_2842 PF01032 FecCD transport family CH61_2847 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH61_2848 PF01695 IstB-like ATP binding protein CH61_2849 PF00665 Integrase core domain CH61_2849 PF02796 Helix-turn-helix domain of resolvase CH61_285 PF02253 Phospholipase A1 CH61_2850 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH61_2851 PF05958 tRNA (Uracil-5-)-methyltransferase CH61_2852 PF10767 Protein of unknown function (DUF2593) CH61_2853 PF00528 Binding-protein-dependent transport system inner membrane component CH61_2854 PF00528 Binding-protein-dependent transport system inner membrane component CH61_2855 PF00005 ABC transporter CH61_2855 PF08402 TOBE domain CH61_2856 PF13416 Bacterial extracellular solute-binding protein CH61_2857 PF10722 Putative bacterial sensory transduction regulator CH61_2858 PF07214 Protein of unknown function (DUF1418) CH61_2859 PF00462 Glutaredoxin CH61_286 PF00570 HRDC domain CH61_286 PF16124 RecQ zinc-binding CH61_286 PF00270 DEAD/DEAH box helicase CH61_286 PF00271 Helicase conserved C-terminal domain CH61_286 PF09382 RQC domain CH61_2860 PF02080 TrkA-C domain CH61_2860 PF06826 Predicted Permease Membrane Region CH61_2862 PF01569 PAP2 superfamily CH61_2863 PF01791 DeoC/LacD family aldolase CH61_2864 PF00455 DeoR C terminal sensor domain CH61_2864 PF08220 DeoR-like helix-turn-helix domain CH61_2866 PF00768 D-alanyl-D-alanine carboxypeptidase CH61_2866 PF07943 Penicillin-binding protein 5, C-terminal domain CH61_2867 PF00528 Binding-protein-dependent transport system inner membrane component CH61_2868 PF09383 NIL domain CH61_2868 PF00005 ABC transporter CH61_2869 PF03180 NLPA lipoprotein CH61_287 PF01810 LysE type translocator CH61_2872 PF00043 Glutathione S-transferase, C-terminal domain CH61_2872 PF13417 Glutathione S-transferase, N-terminal domain CH61_2873 PF07715 TonB-dependent Receptor Plug Domain CH61_2873 PF00593 TonB dependent receptor CH61_2874 PF00005 ABC transporter CH61_2875 PF01032 FecCD transport family CH61_2877 PF00324 Amino acid permease CH61_2879 PF03466 LysR substrate binding domain CH61_2879 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_288 PF01810 LysE type translocator CH61_2880 PF03601 Conserved hypothetical protein 698 CH61_2881 PF01261 Xylose isomerase-like TIM barrel CH61_2882 PF13953 PapC C-terminal domain CH61_2882 PF13954 PapC N-terminal domain CH61_2882 PF00577 Outer membrane usher protein CH61_2883 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH61_2883 PF02753 Pili assembly chaperone PapD, C-terminal domain CH61_2885 PF17550 Family of unknown function CH61_2886 PF00486 Transcriptional regulatory protein, C terminal CH61_2887 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH61_2887 PF02378 Phosphotransferase system, EIIC CH61_2888 PF00294 pfkB family carbohydrate kinase CH61_2889 PF00381 PTS HPr component phosphorylation site CH61_2889 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH61_289 PF12146 Serine aminopeptidase, S33 CH61_2890 PF00293 NUDIX domain CH61_2891 PF02653 Branched-chain amino acid transport system / permease component CH61_2892 PF00005 ABC transporter CH61_2894 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH61_2895 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH61_2895 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH61_2896 PF00171 Aldehyde dehydrogenase family CH61_2898 PF01842 ACT domain CH61_2898 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH61_2898 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH61_29 PF00691 OmpA family CH61_29 PF13488 Glycine zipper CH61_2900 PF03692 Putative zinc- or iron-chelating domain CH61_2901 PF03222 Tryptophan/tyrosine permease family CH61_2902 PF08207 Elongation factor P (EF-P) KOW-like domain CH61_2902 PF09285 Elongation factor P, C-terminal CH61_2902 PF01132 Elongation factor P (EF-P) OB domain CH61_2903 PF03786 D-mannonate dehydratase (UxuA) CH61_2904 PF01232 Mannitol dehydrogenase Rossmann domain CH61_2904 PF08125 Mannitol dehydrogenase C-terminal domain CH61_2905 PF00392 Bacterial regulatory proteins, gntR family CH61_2905 PF07729 FCD domain CH61_2907 PF07683 Cobalamin synthesis protein cobW C-terminal domain CH61_2907 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH61_2908 PF01569 PAP2 superfamily CH61_2909 PF00877 NlpC/P60 family CH61_2911 PF00563 EAL domain CH61_2911 PF12792 CSS motif domain associated with EAL CH61_2912 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH61_2913 PF00528 Binding-protein-dependent transport system inner membrane component CH61_2914 PF00528 Binding-protein-dependent transport system inner membrane component CH61_2914 PF12911 N-terminal TM domain of oligopeptide transport permease C CH61_2915 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH61_2915 PF00005 ABC transporter CH61_2916 PF13989 YejG-like protein CH61_2917 PF07690 Major Facilitator Superfamily CH61_2918 PF01479 S4 domain CH61_2918 PF00849 RNA pseudouridylate synthase CH61_2919 PF04851 Type III restriction enzyme, res subunit CH61_2919 PF00271 Helicase conserved C-terminal domain CH61_292 PF03009 Glycerophosphoryl diester phosphodiesterase family CH61_2920 PF01386 Ribosomal L25p family CH61_2921 PF01797 Transposase IS200 like CH61_2922 PF04245 37-kD nucleoid-associated bacterial protein CH61_2923 PF07208 Protein of unknown function (DUF1414) CH61_2924 PF11893 Domain of unknown function (DUF3413) CH61_2924 PF00884 Sulfatase CH61_2927 PF05638 Type VI secretion system effector, Hcp CH61_293 PF04324 BFD-like [2Fe-2S] binding domain CH61_293 PF01266 FAD dependent oxidoreductase CH61_2931 PF00232 Glycosyl hydrolase family 1 CH61_2933 PF01380 SIS domain CH61_2933 PF01418 Helix-turn-helix domain, rpiR family CH61_2934 PF07484 Phage Tail Collar Domain CH61_2937 PF04865 Baseplate J-like protein CH61_294 PF00890 FAD binding domain CH61_2945 PF17482 Phage tail sheath C-terminal domain CH61_2945 PF04984 Phage tail sheath protein subtilisin-like domain CH61_2949 PF01261 Xylose isomerase-like TIM barrel CH61_295 PF13183 4Fe-4S dicluster domain CH61_295 PF02754 Cysteine-rich domain CH61_2950 PF08220 DeoR-like helix-turn-helix domain CH61_2950 PF00455 DeoR C terminal sensor domain CH61_2951 PF00596 Class II Aldolase and Adducin N-terminal domain CH61_2952 PF07005 Sugar-binding N-terminal domain CH61_2952 PF17042 Nucleotide-binding C-terminal domain CH61_2953 PF06530 Phage antitermination protein Q CH61_2954 PF01381 Helix-turn-helix CH61_2954 PF00717 Peptidase S24-like CH61_2955 PF06183 DinI-like family CH61_2957 PF01278 Omptin family CH61_2958 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH61_2958 PF00672 HAMP domain CH61_2958 PF02743 Cache domain CH61_2959 PF12706 Beta-lactamase superfamily domain CH61_296 PF08786 DcrB CH61_2961 PF00144 Beta-lactamase CH61_2964 PF01797 Transposase IS200 like CH61_2965 PF00267 Gram-negative porin CH61_2967 PF07690 Major Facilitator Superfamily CH61_2968 PF16359 RcsD-ABL domain CH61_2968 PF01627 Hpt domain CH61_2968 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_2969 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_2969 PF01627 Hpt domain CH61_2969 PF16359 RcsD-ABL domain CH61_297 PF02592 Putative vitamin uptake transporter CH61_2970 PF00196 Bacterial regulatory proteins, luxR family CH61_2970 PF00072 Response regulator receiver domain CH61_2971 PF09456 RcsC Alpha-Beta-Loop (ABL) CH61_2971 PF00512 His Kinase A (phospho-acceptor) domain CH61_2971 PF00072 Response regulator receiver domain CH61_2971 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_2972 PF03989 DNA gyrase C-terminal domain, beta-propeller CH61_2972 PF00521 DNA gyrase/topoisomerase IV, subunit A CH61_2974 PF03477 ATP cone domain CH61_2974 PF02867 Ribonucleotide reductase, barrel domain CH61_2974 PF00317 Ribonucleotide reductase, all-alpha domain CH61_2975 PF00268 Ribonucleotide reductase, small chain CH61_2976 PF00111 2Fe-2S iron-sulfur cluster binding domain CH61_2977 PF03974 Ecotin CH61_2978 PF00994 Probable molybdopterin binding domain CH61_2979 PF03222 Tryptophan/tyrosine permease family CH61_298 PF01206 Sulfurtransferase TusA CH61_2980 PF07437 YfaZ precursor CH61_2981 PF06628 Catalase-related immune-responsive CH61_2981 PF00199 Catalase CH61_2982 PF13307 Helicase C-terminal domain CH61_2982 PF06733 DEAD_2 CH61_2983 PF00267 Gram-negative porin CH61_2984 PF00892 EamA-like transporter family CH61_2986 PF01276 Orn/Lys/Arg decarboxylase, major domain CH61_2986 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH61_2986 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH61_2987 PF13520 Amino acid permease CH61_2988 PF00528 Binding-protein-dependent transport system inner membrane component CH61_2989 PF00005 ABC transporter CH61_299 PF00403 Heavy-metal-associated domain CH61_2990 PF00528 Binding-protein-dependent transport system inner membrane component CH61_2993 PF00581 Rhodanese-like domain CH61_2996 PF00005 ABC transporter CH61_2997 PF00005 ABC transporter CH61_2998 PF02653 Branched-chain amino acid transport system / permease component CH61_2999 PF02653 Branched-chain amino acid transport system / permease component CH61_3 PF14849 YidC periplasmic domain CH61_3 PF02096 60Kd inner membrane protein CH61_300 PF07947 YhhN family CH61_3000 PF02954 Bacterial regulatory protein, Fis family CH61_3000 PF13188 PAS domain CH61_3000 PF00158 Sigma-54 interaction domain CH61_3001 PF07308 Protein of unknown function (DUF1456) CH61_3002 PF00528 Binding-protein-dependent transport system inner membrane component CH61_3003 PF00528 Binding-protein-dependent transport system inner membrane component CH61_3005 PF00005 ABC transporter CH61_3006 PF04226 Transglycosylase associated protein CH61_3008 PF01844 HNH endonuclease CH61_3009 PF01928 CYTH domain CH61_3010 PF09330 D-lactate dehydrogenase, membrane binding CH61_3010 PF01565 FAD binding domain CH61_3011 PF00768 D-alanyl-D-alanine carboxypeptidase CH61_3013 PF01207 Dihydrouridine synthase (Dus) CH61_3015 PF01797 Transposase IS200 like CH61_3016 PF03825 Nucleoside H+ symporter CH61_3017 PF01048 Phosphorylase superfamily CH61_3019 PF03466 LysR substrate binding domain CH61_3019 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_3020 PF02028 BCCT, betaine/carnitine/choline family transporter CH61_3021 PF00440 Bacterial regulatory proteins, tetR family CH61_3021 PF13977 BetI-type transcriptional repressor, C-terminal CH61_3022 PF00171 Aldehyde dehydrogenase family CH61_3023 PF05199 GMC oxidoreductase CH61_3023 PF00732 GMC oxidoreductase CH61_3024 PF01797 Transposase IS200 like CH61_3025 PF01027 Inhibitor of apoptosis-promoting Bax1 CH61_3026 PF02391 MoaE protein CH61_3027 PF02597 ThiS family CH61_3028 PF01967 MoaC family CH61_3029 PF04055 Radical SAM superfamily CH61_3029 PF06463 Molybdenum Cofactor Synthesis C CH61_303 PF06611 Protein of unknown function (DUF1145) CH61_3031 PF01933 Uncharacterised protein family UPF0052 CH61_3032 PF09905 DNA-binding protein VF530 CH61_3033 PF17757 UvrB interaction domain CH61_3033 PF12344 Ultra-violet resistance protein B CH61_3033 PF04851 Type III restriction enzyme, res subunit CH61_3033 PF02151 UvrB/uvrC motif CH61_3033 PF00271 Helicase conserved C-terminal domain CH61_3036 PF08241 Methyltransferase domain CH61_3037 PF00155 Aminotransferase class I and II CH61_3038 PF04055 Radical SAM superfamily CH61_3038 PF06968 Biotin and Thiamin Synthesis associated domain CH61_3039 PF00202 Aminotransferase class-III CH61_3040 PF10282 Lactonase, 7-bladed beta-propeller CH61_3042 PF03459 TOBE domain CH61_3042 PF00005 ABC transporter CH61_3043 PF00528 Binding-protein-dependent transport system inner membrane component CH61_3045 PF10766 Multidrug efflux pump-associated protein AcrZ CH61_3046 PF03459 TOBE domain CH61_3046 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_3047 PF00005 ABC transporter CH61_305 PF02881 SRP54-type protein, helical bundle domain CH61_305 PF00448 SRP54-type protein, GTPase domain CH61_305 PF00448 SRP54-type protein, GTPase domain CH61_305 PF02881 SRP54-type protein, helical bundle domain CH61_3050 PF16363 GDP-mannose 4,6 dehydratase CH61_3051 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CH61_3051 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CH61_3052 PF08544 GHMP kinases C terminal CH61_3052 PF10509 Galactokinase galactose-binding signature CH61_3052 PF00288 GHMP kinases N terminal domain CH61_3054 PF01263 Aldose 1-epimerase CH61_3056 PF00300 Histidine phosphatase superfamily (branch 1) CH61_3057 PF02796 Helix-turn-helix domain of resolvase CH61_3057 PF00665 Integrase core domain CH61_3058 PF01695 IstB-like ATP binding protein CH61_3059 PF00793 DAHP synthetase I family CH61_306 PF00005 ABC transporter CH61_3061 PF01545 Cation efflux family CH61_3062 PF04973 Nicotinamide mononucleotide transporter CH61_3063 PF02445 Quinolinate synthetase A protein CH61_3067 PF16331 TolA binding protein trimerisation CH61_3067 PF13174 Tetratricopeptide repeat CH61_3068 PF00691 OmpA family CH61_3069 PF04052 TolB amino-terminal domain CH61_3069 PF07676 WD40-like Beta Propeller Repeat CH61_307 PF18075 FtsX extracellular domain CH61_307 PF02687 FtsX-like permease family CH61_3070 PF06519 TolA C-terminal CH61_3070 PF06519 TolA C-terminal CH61_3071 PF02472 Biopolymer transport protein ExbD/TolR CH61_3072 PF01618 MotA/TolQ/ExbB proton channel family CH61_3073 PF03061 Thioesterase superfamily CH61_3074 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) CH61_3075 PF08173 Membrane bound YbgT-like protein CH61_3076 PF02322 Cytochrome bd terminal oxidase subunit II CH61_3077 PF01654 Cytochrome bd terminal oxidase subunit I CH61_3078 PF00549 CoA-ligase CH61_3078 PF02629 CoA binding domain CH61_3079 PF00549 CoA-ligase CH61_3079 PF08442 ATP-grasp domain CH61_308 PF00140 Sigma-70 factor, region 1.2 CH61_308 PF04542 Sigma-70 region 2 CH61_308 PF04545 Sigma-70, region 4 CH61_3080 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH61_3080 PF02817 e3 binding domain CH61_3080 PF00364 Biotin-requiring enzyme CH61_3081 PF02779 Transketolase, pyrimidine binding domain CH61_3081 PF16870 2-oxoglutarate dehydrogenase C-terminal CH61_3081 PF16078 2-oxoglutarate dehydrogenase N-terminus CH61_3081 PF00676 Dehydrogenase E1 component CH61_3082 PF13085 2Fe-2S iron-sulfur cluster binding domain CH61_3083 PF02910 Fumarate reductase flavoprotein C-term CH61_3083 PF00890 FAD binding domain CH61_3084 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH61_3085 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH61_3086 PF00285 Citrate synthase, C-terminal domain CH61_3087 PF01025 GrpE CH61_3088 PF01513 ATP-NAD kinase CH61_3089 PF02463 RecF/RecN/SMC N terminal domain CH61_309 PF01797 Transposase IS200 like CH61_3090 PF04355 SmpA / OmlA family CH61_3091 PF03658 RnfH family Ubiquitin CH61_3092 PF03364 Polyketide cyclase / dehydrase and lipid transport CH61_3093 PF01668 SmpB protein CH61_3094 PF01797 Transposase IS200 like CH61_3095 PF13356 Arm DNA-binding domain CH61_3095 PF00589 Phage integrase family CH61_31 PF03352 Methyladenine glycosylase CH61_310 PF12568 Acetyltransferase (GNAT) domain, PanZ CH61_3105 PF05973 Phage derived protein Gp49-like (DUF891) CH61_3107 PF02796 Helix-turn-helix domain of resolvase CH61_3107 PF00665 Integrase core domain CH61_3108 PF01695 IstB-like ATP binding protein CH61_311 PF13458 Periplasmic binding protein CH61_3111 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CH61_3113 PF00929 Exonuclease CH61_3114 PF00075 RNase H CH61_3115 PF08241 Methyltransferase domain CH61_3116 PF00753 Metallo-beta-lactamase superfamily CH61_3116 PF16123 Hydroxyacylglutathione hydrolase C-terminus CH61_3117 PF01476 LysM domain CH61_3117 PF01464 Transglycosylase SLT domain CH61_3118 PF03372 Endonuclease/Exonuclease/phosphatase family CH61_312 PF02653 Branched-chain amino acid transport system / permease component CH61_3120 PF00248 Aldo/keto reductase family CH61_3127 PF09383 NIL domain CH61_3127 PF00005 ABC transporter CH61_3128 PF00528 Binding-protein-dependent transport system inner membrane component CH61_3129 PF03180 NLPA lipoprotein CH61_313 PF11862 Domain of unknown function (DUF3382) CH61_313 PF02653 Branched-chain amino acid transport system / permease component CH61_3130 PF16358 RcsF lipoprotein CH61_3131 PF01980 tRNA-methyltransferase O CH61_3131 PF18389 TrmO C-terminal domain CH61_3132 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH61_3132 PF03129 Anticodon binding domain CH61_3132 PF04073 Aminoacyl-tRNA editing domain CH61_3133 PF04170 NlpE N-terminal domain CH61_3133 PF17185 NlpE C-terminal OB domain CH61_3134 PF00472 RF-1 domain CH61_3135 PF07152 YaeQ protein CH61_3136 PF06786 Uncharacterised protein family (UPF0253) CH61_3137 PF07073 Modulator of Rho-dependent transcription termination (ROF) CH61_3138 PF00034 Cytochrome c CH61_3139 PF11734 TilS substrate C-terminal domain CH61_3139 PF09179 TilS substrate binding domain CH61_3139 PF01171 PP-loop family CH61_314 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH61_314 PF00005 ABC transporter CH61_3140 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH61_3141 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CH61_3142 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH61_3142 PF02811 PHP domain CH61_3142 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH61_3142 PF14579 Helix-hairpin-helix motif CH61_3142 PF01336 OB-fold nucleic acid binding domain CH61_3143 PF01351 Ribonuclease HII CH61_3144 PF02684 Lipid-A-disaccharide synthetase CH61_3145 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CH61_3145 PF00132 Bacterial transferase hexapeptide (six repeats) CH61_3146 PF07977 FabA-like domain CH61_3147 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CH61_3147 PF00132 Bacterial transferase hexapeptide (six repeats) CH61_3148 PF03938 Outer membrane protein (OmpH-like) CH61_3149 PF01103 Surface antigen CH61_3149 PF07244 Surface antigen variable number repeat CH61_315 PF00005 ABC transporter CH61_3150 PF17820 PDZ domain CH61_3150 PF02163 Peptidase family M50 CH61_3152 PF01255 Putative undecaprenyl diphosphate synthase CH61_3153 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CH61_3153 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CH61_3153 PF13288 DXP reductoisomerase C-terminal domain CH61_3154 PF01765 Ribosome recycling factor CH61_3155 PF00696 Amino acid kinase family CH61_3156 PF00889 Elongation factor TS CH61_3157 PF00318 Ribosomal protein S2 CH61_3158 PF00557 Metallopeptidase family M24 CH61_3159 PF01909 Nucleotidyltransferase domain CH61_3159 PF01966 HD domain CH61_3159 PF08335 GlnD PII-uridylyltransferase CH61_3159 PF01842 ACT domain CH61_3160 PF00132 Bacterial transferase hexapeptide (six repeats) CH61_3160 PF14602 Hexapeptide repeat of succinyl-transferase CH61_3160 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CH61_3161 PF11944 Protein of unknown function (DUF3461) CH61_3162 PF00258 Flavodoxin CH61_3163 PF00849 RNA pseudouridylate synthase CH61_3164 PF04287 tRNA pseudouridine synthase C CH61_3165 PF01797 Transposase IS200 like CH61_3166 PF07348 Syd protein (SUKH-2) CH61_3167 PF14489 QueF-like protein CH61_3167 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CH61_3168 PF03641 Possible lysine decarboxylase CH61_3168 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CH61_3168 PF11892 Domain of unknown function (DUF3412) CH61_3169 PF01367 5'-3' exonuclease, C-terminal SAM fold CH61_3169 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH61_3170 PF01728 FtsJ-like methyltransferase CH61_3170 PF18125 RlmM ferredoxin-like domain CH61_3171 PF04241 Protein of unknown function (DUF423) CH61_3172 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_3172 PF03466 LysR substrate binding domain CH61_3174 PF00266 Aminotransferase class-V CH61_3175 PF02657 Fe-S metabolism associated domain CH61_3176 PF00899 ThiF family CH61_3177 PF06725 3D domain CH61_3177 PF03562 MltA specific insert domain CH61_3180 PF11741 AMIN domain CH61_3180 PF01520 N-acetylmuramoyl-L-alanine amidase CH61_3181 PF00696 Amino acid kinase family CH61_3181 PF00583 Acetyltransferase (GNAT) family CH61_3182 PF13538 UvrD-like helicase C-terminal domain CH61_3183 PF13361 UvrD-like helicase C-terminal domain CH61_3183 PF00580 UvrD/REP helicase N-terminal domain CH61_3183 PF12705 PD-(D/E)XK nuclease superfamily CH61_3184 PF16187 Middle or third domain of peptidase_M16 CH61_3184 PF00675 Insulinase (Peptidase family M16) CH61_3184 PF05193 Peptidase M16 inactive domain CH61_3185 PF17946 RecC C-terminal domain CH61_3189 PF01695 IstB-like ATP binding protein CH61_3191 PF00665 Integrase core domain CH61_3191 PF02796 Helix-turn-helix domain of resolvase CH61_3192 PF00202 Aminotransferase class-III CH61_3192 PF00501 AMP-binding enzyme CH61_3192 PF13193 AMP-binding enzyme C-terminal domain CH61_3192 PF02801 Beta-ketoacyl synthase, C-terminal domain CH61_3192 PF00109 Beta-ketoacyl synthase, N-terminal domain CH61_3192 PF16197 Ketoacyl-synthetase C-terminal extension CH61_3192 PF00550 Phosphopantetheine attachment site CH61_3192 PF00668 Condensation domain CH61_3193 PF07715 TonB-dependent Receptor Plug Domain CH61_3193 PF00593 TonB dependent receptor CH61_3194 PF01546 Peptidase family M20/M25/M40 CH61_3194 PF07687 Peptidase dimerisation domain CH61_3195 PF03806 AbgT putative transporter family CH61_3196 PF14496 C-terminal novel E3 ligase, LRR-interacting CH61_3196 PF12468 Type III secretion system leucine rich repeat protein CH61_3197 PF12468 Type III secretion system leucine rich repeat protein CH61_3197 PF12468 Type III secretion system leucine rich repeat protein CH61_3197 PF14496 C-terminal novel E3 ligase, LRR-interacting CH61_3197 PF14496 C-terminal novel E3 ligase, LRR-interacting CH61_3198 PF12468 Type III secretion system leucine rich repeat protein CH61_3198 PF14496 C-terminal novel E3 ligase, LRR-interacting CH61_3199 PF03797 Autotransporter beta-domain CH61_3201 PF07906 ShET2 enterotoxin, N-terminal region CH61_3202 PF00873 AcrB/AcrD/AcrF family CH61_3203 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH61_3203 PF00529 HlyD membrane-fusion protein of T1SS CH61_3205 PF03707 Bacterial signalling protein N terminal repeat CH61_3205 PF00563 EAL domain CH61_3205 PF00990 Diguanylate cyclase, GGDEF domain CH61_3205 PF13188 PAS domain CH61_3206 PF00665 Integrase core domain CH61_3206 PF13276 HTH-like domain CH61_3206 PF13333 Integrase core domain CH61_3209 PF07715 TonB-dependent Receptor Plug Domain CH61_3209 PF00593 TonB dependent receptor CH61_3210 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CH61_3211 PF06276 Ferric iron reductase FhuF-like transporter CH61_3211 PF04183 IucA / IucC family CH61_3213 PF06276 Ferric iron reductase FhuF-like transporter CH61_3213 PF04183 IucA / IucC family CH61_3214 PF04183 IucA / IucC family CH61_3214 PF06276 Ferric iron reductase FhuF-like transporter CH61_3218 PF00765 Autoinducer synthase CH61_3219 PF00196 Bacterial regulatory proteins, luxR family CH61_3219 PF03472 Autoinducer binding domain CH61_3221 PF02517 CPBP intramembrane metalloprotease CH61_3223 PF03811 InsA N-terminal domain CH61_3223 PF12759 InsA C-terminal domain CH61_323 PF13416 Bacterial extracellular solute-binding protein CH61_3230 PF05736 OprF membrane domain CH61_3230 PF00691 OmpA family CH61_3232 PF00004 ATPase family associated with various cellular activities (AAA) CH61_3232 PF10431 C-terminal, D2-small domain, of ClpB protein CH61_3232 PF07724 AAA domain (Cdc48 subfamily) CH61_3232 PF17871 AAA lid domain CH61_3235 PF12759 InsA C-terminal domain CH61_3235 PF03811 InsA N-terminal domain CH61_3239 PF12759 InsA C-terminal domain CH61_3239 PF03811 InsA N-terminal domain CH61_324 PF00528 Binding-protein-dependent transport system inner membrane component CH61_3240 PF03400 IS1 transposase CH61_3242 PF02899 Phage integrase, N-terminal SAM-like domain CH61_3242 PF00589 Phage integrase family CH61_3244 PF01276 Orn/Lys/Arg decarboxylase, major domain CH61_3244 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH61_3244 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH61_3245 PF13407 Periplasmic binding protein domain CH61_3246 PF00005 ABC transporter CH61_3247 PF02653 Branched-chain amino acid transport system / permease component CH61_3248 PF07715 TonB-dependent Receptor Plug Domain CH61_325 PF00528 Binding-protein-dependent transport system inner membrane component CH61_3250 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CH61_3250 PF01464 Transglycosylase SLT domain CH61_3251 PF04362 Bacterial Fe(2+) trafficking CH61_3252 PF00730 HhH-GPD superfamily base excision DNA repair protein CH61_3252 PF14815 NUDIX domain CH61_3252 PF10576 Iron-sulfur binding domain of endonuclease III CH61_3252 PF00633 Helix-hairpin-helix motif CH61_3253 PF02390 Putative methyltransferase CH61_3254 PF04320 Protein with unknown function (DUF469) CH61_3255 PF04960 Glutaminase CH61_3256 PF11101 Protein of unknown function (DUF2884) CH61_3257 PF11101 Protein of unknown function (DUF2884) CH61_3258 PF12146 Serine aminopeptidase, S33 CH61_3258 PF11647 Membrane Localization Domain CH61_3258 PF16671 Actin cross-linking domain CH61_3258 PF07634 RtxA repeat CH61_3258 PF11713 Peptidase C80 family CH61_3259 PF06969 HemN C-terminal domain CH61_3259 PF04055 Radical SAM superfamily CH61_326 PF17912 MalK OB fold domain CH61_326 PF00005 ABC transporter CH61_3260 PF01725 Ham1 family CH61_3261 PF02594 Uncharacterised ACR, YggU family COG1872 CH61_3262 PF02325 YGGT family CH61_3263 PF03807 NADP oxidoreductase coenzyme F420-dependent CH61_3263 PF14748 Pyrroline-5-carboxylate reductase dimerisation CH61_3264 PF01168 Alanine racemase, N-terminal domain CH61_3265 PF00437 Type II/IV secretion system protein CH61_3266 PF04371 Porphyromonas-type peptidyl-arginine deiminase CH61_3267 PF00795 Carbon-nitrogen hydrolase CH61_3268 PF03652 Holliday junction resolvase CH61_3269 PF02622 Uncharacterized ACR, COG1678 CH61_327 PF03009 Glycerophosphoryl diester phosphodiesterase family CH61_3270 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CH61_3270 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CH61_3271 PF04452 RNA methyltransferase CH61_3272 PF04231 Endonuclease I CH61_3273 PF17283 SprT-like zinc ribbon domain CH61_3273 PF10263 SprT-like family CH61_3274 PF00438 S-adenosylmethionine synthetase, N-terminal domain CH61_3274 PF02772 S-adenosylmethionine synthetase, central domain CH61_3274 PF02773 S-adenosylmethionine synthetase, C-terminal domain CH61_3276 PF17810 Arginine decarboxylase helical bundle domain CH61_3276 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH61_3276 PF17944 Arginine decarboxylase C-terminal helical extension CH61_3278 PF01435 Peptidase family M48 CH61_3279 PF02779 Transketolase, pyrimidine binding domain CH61_3279 PF02780 Transketolase, C-terminal domain CH61_3279 PF00456 Transketolase, thiamine diphosphate binding domain CH61_328 PF03547 Membrane transport protein CH61_3280 PF01797 Transposase IS200 like CH61_3281 PF02796 Helix-turn-helix domain of resolvase CH61_3281 PF00665 Integrase core domain CH61_3283 PF01695 IstB-like ATP binding protein CH61_3284 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH61_3284 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH61_3285 PF00162 Phosphoglycerate kinase CH61_3286 PF01116 Fructose-bisphosphate aldolase class-II CH61_3287 PF00924 Mechanosensitive ion channel CH61_3287 PF05552 Conserved TM helix CH61_3288 PF01810 LysE type translocator CH61_3289 PF04402 Protein of unknown function (DUF541) CH61_329 PF03466 LysR substrate binding domain CH61_329 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_3290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_3290 PF03466 LysR substrate binding domain CH61_3291 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH61_3292 PF01842 ACT domain CH61_3292 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH61_3292 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH61_3293 PF01812 5-formyltetrahydrofolate cyclo-ligase family CH61_3294 PF05164 Cell division protein ZapA CH61_3295 PF03695 Uncharacterised protein family (UPF0149) CH61_3296 PF00557 Metallopeptidase family M24 CH61_3296 PF05195 Aminopeptidase P, N-terminal domain CH61_3297 PF01494 FAD binding domain CH61_3298 PF01494 FAD binding domain CH61_3299 PF01571 Aminomethyltransferase folate-binding domain CH61_3299 PF08669 Glycine cleavage T-protein C-terminal barrel domain CH61_33 PF02091 Glycyl-tRNA synthetase alpha subunit CH61_330 PF00892 EamA-like transporter family CH61_3300 PF01597 Glycine cleavage H-protein CH61_3301 PF02347 Glycine cleavage system P-protein CH61_3304 PF03895 YadA-like membrane anchor domain CH61_3304 PF05658 Head domain of trimeric autotransporter adhesin CH61_3304 PF13018 Extended Signal Peptide of Type V secretion system CH61_3304 PF05662 Coiled stalk of trimeric autotransporter adhesin CH61_3306 PF03006 Haemolysin-III related CH61_3308 PF01571 Aminomethyltransferase folate-binding domain CH61_3309 PF03937 Flavinator of succinate dehydrogenase CH61_331 PF08267 Cobalamin-independent synthase, N-terminal domain CH61_331 PF01717 Cobalamin-independent synthase, Catalytic domain CH61_3310 PF00486 Transcriptional regulatory protein, C terminal CH61_3310 PF00072 Response regulator receiver domain CH61_3311 PF00512 His Kinase A (phospho-acceptor) domain CH61_3311 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_3311 PF00672 HAMP domain CH61_3312 PF06123 Inner membrane protein CreD CH61_3313 PF00258 Flavodoxin CH61_3314 PF02899 Phage integrase, N-terminal SAM-like domain CH61_3314 PF00589 Phage integrase family CH61_3315 PF13098 Thioredoxin-like domain CH61_3315 PF10411 Disulfide bond isomerase protein N-terminus CH61_3316 PF01368 DHH family CH61_3316 PF02272 DHHA1 domain CH61_3316 PF17768 RecJ OB domain CH61_3317 PF00472 RF-1 domain CH61_3317 PF03462 PCRF domain CH61_3318 PF01336 OB-fold nucleic acid binding domain CH61_3318 PF00152 tRNA synthetases class II (D, K and N) CH61_332 PF01738 Dienelactone hydrolase family CH61_3320 PF13356 Arm DNA-binding domain CH61_3320 PF14659 Phage integrase, N-terminal SAM-like domain CH61_3320 PF00589 Phage integrase family CH61_3324 PF15723 Motility quorum-sensing regulator, toxin of MqsA CH61_3325 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA CH61_333 PF01048 Phosphorylase superfamily CH61_3342 PF03551 Transcriptional regulator PadR-like family CH61_3343 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family CH61_3345 PF13407 Periplasmic binding protein domain CH61_3346 PF02653 Branched-chain amino acid transport system / permease component CH61_3347 PF00005 ABC transporter CH61_3348 PF17912 MalK OB fold domain CH61_3348 PF00005 ABC transporter CH61_3349 PF13416 Bacterial extracellular solute-binding protein CH61_335 PF02554 Carbon starvation protein CstA CH61_335 PF13722 5TM C-terminal transporter carbon starvation CstA CH61_3350 PF00528 Binding-protein-dependent transport system inner membrane component CH61_3351 PF00528 Binding-protein-dependent transport system inner membrane component CH61_3352 PF07745 Glycosyl hydrolase family 53 CH61_3353 PF02449 Beta-galactosidase CH61_3353 PF08533 Beta-galactosidase C-terminal domain CH61_3353 PF08532 Beta-galactosidase trimerisation domain CH61_3354 PF00367 phosphotransferase system, EIIB CH61_3354 PF02378 Phosphotransferase system, EIIC CH61_3355 PF02264 LamB porin CH61_3356 PF00356 Bacterial regulatory proteins, lacI family CH61_3357 PF01055 Glycosyl hydrolases family 31 CH61_3357 PF13802 Galactose mutarotase-like CH61_3357 PF16338 Domain of unknown function (DUF4968) CH61_3357 PF17137 Domain of unknown function (DUF5110) CH61_3358 PF07690 Major Facilitator Superfamily CH61_3359 PF00356 Bacterial regulatory proteins, lacI family CH61_336 PF09335 SNARE associated Golgi protein CH61_3362 PF01116 Fructose-bisphosphate aldolase class-II CH61_3364 PF00884 Sulfatase CH61_3365 PF04055 Radical SAM superfamily CH61_3365 PF13186 Iron-sulfur cluster-binding domain CH61_3368 PF01979 Amidohydrolase family CH61_3369 PF03610 PTS system fructose IIA component CH61_337 PF02646 RmuC family CH61_3370 PF03613 PTS system mannose/fructose/sorbose family IID component CH61_3371 PF03609 PTS system sorbose-specific iic component CH61_3372 PF03830 PTS system sorbose subfamily IIB component CH61_3373 PF01380 SIS domain CH61_3374 PF08013 Tagatose 6 phosphate kinase CH61_3375 PF08220 DeoR-like helix-turn-helix domain CH61_3375 PF00455 DeoR C terminal sensor domain CH61_3376 PF00884 Sulfatase CH61_3377 PF01797 Transposase IS200 like CH61_3378 PF02796 Helix-turn-helix domain of resolvase CH61_3378 PF00665 Integrase core domain CH61_338 PF01209 ubiE/COQ5 methyltransferase family CH61_3380 PF01695 IstB-like ATP binding protein CH61_3381 PF09092 Lyase, N terminal CH61_3381 PF02278 Polysaccharide lyase family 8, super-sandwich domain CH61_3381 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain CH61_3381 PF09093 Lyase, catalytic CH61_3385 PF00484 Carbonic anhydrase CH61_3388 PF00263 Bacterial type II and III secretion system protein CH61_3388 PF03958 Bacterial type II/III secretion system short domain CH61_339 PF02036 SCP-2 sterol transfer family CH61_3391 PF00482 Type II secretion system (T2SS), protein F CH61_3392 PF08334 Type II secretion system (T2SS), protein G CH61_3392 PF07963 Prokaryotic N-terminal methylation motif CH61_3399 PF06750 Bacterial Peptidase A24 N-terminal domain CH61_3399 PF01478 Type IV leader peptidase family CH61_34 PF05746 DALR anticodon binding domain CH61_34 PF02092 Glycyl-tRNA synthetase beta subunit CH61_340 PF03109 ABC1 family CH61_3404 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH61_3404 PF00672 HAMP domain CH61_3404 PF02203 Tar ligand binding domain homologue CH61_3406 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_3406 PF03466 LysR substrate binding domain CH61_3407 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_3407 PF03466 LysR substrate binding domain CH61_3408 PF07690 Major Facilitator Superfamily CH61_3409 PF00356 Bacterial regulatory proteins, lacI family CH61_341 PF02416 mttA/Hcf106 family CH61_3410 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CH61_3410 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH61_3411 PF00384 Molybdopterin oxidoreductase CH61_3411 PF01568 Molydopterin dinucleotide binding domain CH61_3412 PF13193 AMP-binding enzyme C-terminal domain CH61_3412 PF01553 Acyltransferase CH61_3412 PF00501 AMP-binding enzyme CH61_3413 PF07690 Major Facilitator Superfamily CH61_3416 PF00248 Aldo/keto reductase family CH61_3417 PF02976 DNA mismatch repair enzyme MutH CH61_3418 PF00293 NUDIX domain CH61_3419 PF02896 PEP-utilising enzyme, TIM barrel domain CH61_3419 PF01590 GAF domain CH61_3419 PF05524 PEP-utilising enzyme, N-terminal CH61_3419 PF00391 PEP-utilising enzyme, mobile domain CH61_3420 PF01790 Prolipoprotein diacylglyceryl transferase CH61_3421 PF00303 Thymidylate synthase CH61_3424 PF00665 Integrase core domain CH61_3424 PF02796 Helix-turn-helix domain of resolvase CH61_3425 PF01695 IstB-like ATP binding protein CH61_3426 PF00501 AMP-binding enzyme CH61_3426 PF00668 Condensation domain CH61_3426 PF00550 Phosphopantetheine attachment site CH61_3426 PF08242 Methyltransferase domain CH61_3427 PF00668 Condensation domain CH61_3427 PF13193 AMP-binding enzyme C-terminal domain CH61_3427 PF00501 AMP-binding enzyme CH61_3428 PF00668 Condensation domain CH61_3428 PF00550 Phosphopantetheine attachment site CH61_3428 PF00501 AMP-binding enzyme CH61_3428 PF08242 Methyltransferase domain CH61_343 PF00902 Sec-independent protein translocase protein (TatC) CH61_3431 PF00975 Thioesterase domain CH61_3433 PF00005 ABC transporter CH61_3433 PF04954 Siderophore-interacting protein CH61_3433 PF00664 ABC transporter transmembrane region CH61_3433 PF08021 Siderophore-interacting FAD-binding domain CH61_3434 PF00664 ABC transporter transmembrane region CH61_3434 PF00005 ABC transporter CH61_3438 PF02447 GntP family permease CH61_344 PF01026 TatD related DNase CH61_3440 PF12951 Passenger-associated-transport-repeat CH61_3441 PF04717 Type VI secretion system, phage-baseplate injector CH61_3443 PF03527 RHS protein CH61_3443 PF05593 RHS Repeat CH61_3446 PF00939 Sodium:sulfate symporter transmembrane region CH61_3447 PF00356 Bacterial regulatory proteins, lacI family CH61_3448 PF00665 Integrase core domain CH61_3448 PF13333 Integrase core domain CH61_3448 PF13276 HTH-like domain CH61_345 PF02796 Helix-turn-helix domain of resolvase CH61_345 PF00665 Integrase core domain CH61_3451 PF05433 Glycine zipper 2TM domain CH61_3452 PF05433 Glycine zipper 2TM domain CH61_3456 PF00691 OmpA family CH61_3456 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH61_3457 PF01618 MotA/TolQ/ExbB proton channel family CH61_3458 PF04542 Sigma-70 region 2 CH61_3458 PF04545 Sigma-70, region 4 CH61_346 PF01695 IstB-like ATP binding protein CH61_3463 PF07196 Flagellin hook IN motif CH61_3463 PF07195 Flagellar hook-associated protein 2 C-terminus CH61_3463 PF02465 Flagellar hook-associated protein 2 N-terminus CH61_3464 PF00669 Bacterial flagellin N-terminal helical region CH61_3464 PF00700 Bacterial flagellin C-terminal helical region CH61_3465 PF00700 Bacterial flagellin C-terminal helical region CH61_3465 PF00669 Bacterial flagellin N-terminal helical region CH61_3466 PF00700 Bacterial flagellin C-terminal helical region CH61_3466 PF00669 Bacterial flagellin N-terminal helical region CH61_3467 PF00486 Transcriptional regulatory protein, C terminal CH61_3467 PF18500 CadC C-terminal domain 1 CH61_347 PF01026 TatD related DNase CH61_3471 PF00460 Flagella basal body rod protein CH61_3471 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH61_3473 PF02119 Flagellar P-ring protein CH61_3474 PF02107 Flagellar L-ring protein CH61_3475 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH61_3475 PF00460 Flagella basal body rod protein CH61_3476 PF00460 Flagella basal body rod protein CH61_3476 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH61_3477 PF01797 Transposase IS200 like CH61_3479 PF07559 Flagellar basal body protein FlaE CH61_3479 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH61_3479 PF00460 Flagella basal body rod protein CH61_348 PF00490 Delta-aminolevulinic acid dehydratase CH61_3480 PF03963 Flagellar hook capping protein - N-terminal region CH61_3480 PF13860 FlgD Ig-like domain CH61_3480 PF13861 FlgD Tudor-like domain CH61_3481 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH61_3481 PF00460 Flagella basal body rod protein CH61_3482 PF00460 Flagella basal body rod protein CH61_3483 PF13144 Chaperone for flagella basal body P-ring formation CH61_3487 PF18269 T3SS EscN ATPase C-terminal domain CH61_3487 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH61_349 PF02357 Transcription termination factor nusG CH61_3490 PF08345 Flagellar M-ring protein C-terminal CH61_3490 PF01514 Secretory protein of YscJ/FliF family CH61_3491 PF02049 Flagellar hook-basal body complex protein FliE CH61_3492 PF00072 Response regulator receiver domain CH61_3492 PF00158 Sigma-54 interaction domain CH61_3492 PF02954 Bacterial regulatory protein, Fis family CH61_3494 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH61_3495 PF00813 FliP family CH61_3496 PF01313 Bacterial export proteins, family 3 CH61_3497 PF01311 Bacterial export proteins, family 1 CH61_3498 PF01312 FlhB HrpN YscU SpaS Family CH61_3499 PF00771 FHIPEP family CH61_35 PF11254 Protein of unknown function (DUF3053) CH61_350 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CH61_3500 PF00771 FHIPEP family CH61_3503 PF01497 Periplasmic binding protein CH61_3504 PF00419 Fimbrial protein CH61_3504 PF09222 Fimbrial adhesin F17-AG, lectin domain CH61_3505 PF02753 Pili assembly chaperone PapD, C-terminal domain CH61_3505 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH61_3506 PF00577 Outer membrane usher protein CH61_3506 PF13954 PapC N-terminal domain CH61_3506 PF13953 PapC C-terminal domain CH61_3507 PF01797 Transposase IS200 like CH61_3508 PF01797 Transposase IS200 like CH61_351 PF00175 Oxidoreductase NAD-binding domain CH61_351 PF00970 Oxidoreductase FAD-binding domain CH61_3511 PF04972 BON domain CH61_3511 PF13629 Pilus formation protein N terminal region CH61_3511 PF00263 Bacterial type II and III secretion system protein CH61_3512 PF04972 BON domain CH61_3512 PF00263 Bacterial type II and III secretion system protein CH61_3512 PF13629 Pilus formation protein N terminal region CH61_3515 PF00437 Type II/IV secretion system protein CH61_352 PF00108 Thiolase, N-terminal domain CH61_352 PF02803 Thiolase, C-terminal domain CH61_3522 PF02472 Biopolymer transport protein ExbD/TolR CH61_3524 PF01618 MotA/TolQ/ExbB proton channel family CH61_3525 PF01053 Cys/Met metabolism PLP-dependent enzyme CH61_3526 PF09335 SNARE associated Golgi protein CH61_3527 PF06719 AraC-type transcriptional regulator N-terminus CH61_3527 PF12833 Helix-turn-helix domain CH61_3528 PF00465 Iron-containing alcohol dehydrogenase CH61_3529 PF00248 Aldo/keto reductase family CH61_353 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH61_353 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH61_353 PF00378 Enoyl-CoA hydratase/isomerase CH61_3530 PF11842 Domain of unknown function (DUF3362) CH61_3530 PF04055 Radical SAM superfamily CH61_3530 PF08497 Radical SAM N-terminal CH61_3531 PF11842 Domain of unknown function (DUF3362) CH61_3531 PF04055 Radical SAM superfamily CH61_3531 PF08497 Radical SAM N-terminal CH61_3532 PF07732 Multicopper oxidase CH61_3532 PF07731 Multicopper oxidase CH61_3533 PF01553 Acyltransferase CH61_3534 PF03989 DNA gyrase C-terminal domain, beta-propeller CH61_3534 PF00521 DNA gyrase/topoisomerase IV, subunit A CH61_3535 PF02525 Flavodoxin-like fold CH61_3536 PF03466 LysR substrate binding domain CH61_3536 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_3537 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_3537 PF00986 DNA gyrase B subunit, carboxyl terminus CH61_3537 PF00204 DNA gyrase B CH61_3537 PF01751 Toprim domain CH61_3538 PF05728 Uncharacterised protein family (UPF0227) CH61_3539 PF00149 Calcineurin-like phosphoesterase CH61_354 PF00557 Metallopeptidase family M24 CH61_3540 PF06853 Protein of unknown function (DUF1249) CH61_3541 PF00293 NUDIX domain CH61_3542 PF02321 Outer membrane efflux protein CH61_3544 PF06693 Protein of unknown function (DUF1190) CH61_3545 PF03738 Glutathionylspermidine synthase preATP-grasp CH61_3546 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH61_3547 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CH61_3549 PF04380 Membrane fusogenic activity CH61_355 PF01205 Uncharacterized protein family UPF0029 CH61_355 PF09186 Domain of unknown function (DUF1949) CH61_3550 PF13520 Amino acid permease CH61_3551 PF00294 pfkB family carbohydrate kinase CH61_3551 PF01467 Cytidylyltransferase-like CH61_3552 PF08335 GlnD PII-uridylyltransferase CH61_3552 PF03710 Glutamate-ammonia ligase adenylyltransferase CH61_3553 PF01928 CYTH domain CH61_3554 PF08239 Bacterial SH3 domain CH61_3555 PF12627 Probable RNA and SrmB- binding site of polymerase A CH61_3555 PF01743 Poly A polymerase head domain CH61_3555 PF01966 HD domain CH61_3556 PF02673 Bacitracin resistance protein BacA CH61_3557 PF02152 Dihydroneopterin aldolase CH61_3558 PF02660 Glycerol-3-phosphate acyltransferase CH61_3559 PF00814 Glycoprotease family CH61_356 PF01797 Transposase IS200 like CH61_3560 PF01165 Ribosomal protein S21 CH61_3561 PF10410 DnaB-helicase binding domain of primase CH61_3561 PF08278 DNA primase DnaG DnaB-binding CH61_3561 PF08275 DNA primase catalytic core, N-terminal domain CH61_3561 PF01807 CHC2 zinc finger CH61_3562 PF04546 Sigma-70, non-essential region CH61_3562 PF04545 Sigma-70, region 4 CH61_3562 PF04539 Sigma-70 region 3 CH61_3562 PF04542 Sigma-70 region 2 CH61_3562 PF00140 Sigma-70 factor, region 1.2 CH61_3562 PF03979 Sigma-70 factor, region 1.1 CH61_3569 PF01695 IstB-like ATP binding protein CH61_357 PF09186 Domain of unknown function (DUF1949) CH61_357 PF01205 Uncharacterized protein family UPF0029 CH61_3570 PF02796 Helix-turn-helix domain of resolvase CH61_3570 PF00665 Integrase core domain CH61_3575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_3575 PF03466 LysR substrate binding domain CH61_3579 PF01042 Endoribonuclease L-PSP CH61_358 PF02386 Cation transport protein CH61_3586 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH61_3586 PF00529 HlyD membrane-fusion protein of T1SS CH61_3587 PF04632 Fusaric acid resistance protein family CH61_3589 PF00933 Glycosyl hydrolase family 3 N terminal domain CH61_3589 PF14310 Fibronectin type III-like domain CH61_3589 PF01915 Glycosyl hydrolase family 3 C-terminal domain CH61_359 PF12724 Flavodoxin domain CH61_3591 PF00528 Binding-protein-dependent transport system inner membrane component CH61_3592 PF00528 Binding-protein-dependent transport system inner membrane component CH61_3593 PF13416 Bacterial extracellular solute-binding protein CH61_3594 PF00356 Bacterial regulatory proteins, lacI family CH61_3595 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CH61_3596 PF17912 MalK OB fold domain CH61_3596 PF03459 TOBE domain CH61_3596 PF00005 ABC transporter CH61_36 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH61_36 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH61_36 PF02378 Phosphotransferase system, EIIC CH61_3600 PF13332 Hemagglutinin repeat CH61_3600 PF04829 Pre-toxin domain with VENN motif CH61_3600 PF05860 haemagglutination activity domain CH61_3600 PF13018 Extended Signal Peptide of Type V secretion system CH61_3602 PF05860 haemagglutination activity domain CH61_3602 PF13332 Hemagglutinin repeat CH61_3602 PF13018 Extended Signal Peptide of Type V secretion system CH61_3602 PF04829 Pre-toxin domain with VENN motif CH61_3604 PF04829 Pre-toxin domain with VENN motif CH61_3604 PF05860 haemagglutination activity domain CH61_3604 PF13018 Extended Signal Peptide of Type V secretion system CH61_3604 PF13332 Hemagglutinin repeat CH61_3605 PF08479 POTRA domain, ShlB-type CH61_3605 PF17287 POTRA domain CH61_3605 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH61_3606 PF00092 von Willebrand factor type A domain CH61_3607 PF02342 TerD domain CH61_3609 PF00092 von Willebrand factor type A domain CH61_3612 PF03729 Short repeat of unknown function (DUF308) CH61_3613 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH61_3613 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH61_3614 PF05175 Methyltransferase small domain CH61_3615 PF03797 Autotransporter beta-domain CH61_3616 PF01863 Protein of unknown function DUF45 CH61_3617 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH61_3618 PF00375 Sodium:dicarboxylate symporter family CH61_3620 PF01797 Transposase IS200 like CH61_3621 PF10688 Bacterial inner membrane protein CH61_3622 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CH61_3622 PF08666 SAF domain CH61_3623 PF01232 Mannitol dehydrogenase Rossmann domain CH61_3623 PF08125 Mannitol dehydrogenase C-terminal domain CH61_3624 PF02614 Glucuronate isomerase CH61_3625 PF07690 Major Facilitator Superfamily CH61_3626 PF07729 FCD domain CH61_3626 PF00392 Bacterial regulatory proteins, gntR family CH61_3628 PF09335 SNARE associated Golgi protein CH61_3629 PF13721 SecD export protein N-terminal TM region CH61_3631 PF05957 Bacterial protein of unknown function (DUF883) CH61_3632 PF07332 Putative Actinobacterial Holin-X, holin superfamily III CH61_3634 PF07681 DoxX CH61_3635 PF13409 Glutathione S-transferase, N-terminal domain CH61_3636 PF00665 Integrase core domain CH61_3636 PF02796 Helix-turn-helix domain of resolvase CH61_3637 PF01695 IstB-like ATP binding protein CH61_3638 PF00293 NUDIX domain CH61_3639 PF07516 SecA Wing and Scaffold domain CH61_3639 PF07517 SecA DEAD-like domain CH61_3639 PF02810 SEC-C motif CH61_3639 PF01043 SecA preprotein cross-linking domain CH61_3640 PF06558 Secretion monitor precursor protein (SecM) CH61_3642 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CH61_3643 PF12327 FtsZ family, C-terminal domain CH61_3643 PF00091 Tubulin/FtsZ family, GTPase domain CH61_3644 PF02491 SHS2 domain inserted in FTSA CH61_3645 PF03799 Cell division protein FtsQ CH61_3645 PF08478 POTRA domain, FtsQ-type CH61_3646 PF07478 D-ala D-ala ligase C-terminus CH61_3646 PF01820 D-ala D-ala ligase N-terminus CH61_3647 PF02875 Mur ligase family, glutamate ligase domain CH61_3647 PF08245 Mur ligase middle domain CH61_3647 PF01225 Mur ligase family, catalytic domain CH61_3648 PF04101 Glycosyltransferase family 28 C-terminal domain CH61_3648 PF03033 Glycosyltransferase family 28 N-terminal domain CH61_3649 PF01098 Cell cycle protein CH61_365 PF01565 FAD binding domain CH61_365 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CH61_3650 PF02875 Mur ligase family, glutamate ligase domain CH61_3650 PF08245 Mur ligase middle domain CH61_3651 PF00953 Glycosyl transferase family 4 CH61_3651 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CH61_3652 PF01225 Mur ligase family, catalytic domain CH61_3652 PF02875 Mur ligase family, glutamate ligase domain CH61_3652 PF08245 Mur ligase middle domain CH61_3653 PF01225 Mur ligase family, catalytic domain CH61_3653 PF02875 Mur ligase family, glutamate ligase domain CH61_3653 PF08245 Mur ligase middle domain CH61_3654 PF03717 Penicillin-binding Protein dimerisation domain CH61_3654 PF00905 Penicillin binding protein transpeptidase domain CH61_3655 PF04999 Cell division protein FtsL CH61_3656 PF01795 MraW methylase family CH61_3657 PF02381 MraZ protein, putative antitoxin-like CH61_3658 PF06610 L-alanine exporter CH61_3659 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH61_3659 PF00356 Bacterial regulatory proteins, lacI family CH61_366 PF02237 Biotin protein ligase C terminal domain CH61_366 PF03099 Biotin/lipoate A/B protein ligase family CH61_366 PF08279 HTH domain CH61_3660 PF01797 Transposase IS200 like CH61_3662 PF10369 Small subunit of acetolactate synthase CH61_3663 PF00205 Thiamine pyrophosphate enzyme, central domain CH61_3663 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH61_3663 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH61_3664 PF00501 AMP-binding enzyme CH61_3665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_3665 PF03466 LysR substrate binding domain CH61_3667 PF01797 Transposase IS200 like CH61_3668 PF00682 HMGL-like CH61_3668 PF08502 LeuA allosteric (dimerisation) domain CH61_3669 PF00180 Isocitrate/isopropylmalate dehydrogenase CH61_367 PF00485 Phosphoribulokinase / Uridine kinase family CH61_3670 PF00330 Aconitase family (aconitate hydratase) CH61_3671 PF00694 Aconitase C-terminal domain CH61_3672 PF07690 Major Facilitator Superfamily CH61_3673 PF02796 Helix-turn-helix domain of resolvase CH61_3673 PF00665 Integrase core domain CH61_3675 PF01695 IstB-like ATP binding protein CH61_3676 PF07690 Major Facilitator Superfamily CH61_3677 PF12793 Sugar transport-related sRNA regulator N-term CH61_3677 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH61_368 PF13673 Acetyltransferase (GNAT) domain CH61_3680 PF00528 Binding-protein-dependent transport system inner membrane component CH61_3681 PF00005 ABC transporter CH61_3682 PF09335 SNARE associated Golgi protein CH61_3683 PF00136 DNA polymerase family B CH61_3683 PF03104 DNA polymerase family B, exonuclease domain CH61_3684 PF00176 SNF2 family N-terminal domain CH61_3684 PF00271 Helicase conserved C-terminal domain CH61_3684 PF18339 RapA N-terminal Tudor like domain 1 CH61_3684 PF18337 RapA N-terminal Tudor like domain CH61_3684 PF12137 RNA polymerase recycling family C-terminal CH61_3687 PF00691 OmpA family CH61_3687 PF05736 OprF membrane domain CH61_369 PF00665 Integrase core domain CH61_369 PF02796 Helix-turn-helix domain of resolvase CH61_3695 PF04717 Type VI secretion system, phage-baseplate injector CH61_3696 PF00004 ATPase family associated with various cellular activities (AAA) CH61_3696 PF07724 AAA domain (Cdc48 subfamily) CH61_3696 PF10431 C-terminal, D2-small domain, of ClpB protein CH61_3696 PF17871 AAA lid domain CH61_37 PF08125 Mannitol dehydrogenase C-terminal domain CH61_37 PF01232 Mannitol dehydrogenase Rossmann domain CH61_370 PF01695 IstB-like ATP binding protein CH61_3705 PF00849 RNA pseudouridylate synthase CH61_3706 PF05099 Tellurite resistance protein TerB CH61_3706 PF00226 DnaJ domain CH61_3707 PF03968 OstA-like protein CH61_3707 PF04453 LPS transport system D CH61_3708 PF00639 PPIC-type PPIASE domain CH61_3708 PF09312 SurA N-terminal domain CH61_3709 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CH61_371 PF01695 IstB-like ATP binding protein CH61_3710 PF00398 Ribosomal RNA adenine dimethylase CH61_3711 PF04379 ApaG domain CH61_3712 PF00149 Calcineurin-like phosphoesterase CH61_3714 PF01797 Transposase IS200 like CH61_3715 PF00186 Dihydrofolate reductase CH61_3716 PF12821 Threonine/Serine exporter, ThrE CH61_3717 PF06738 Putative threonine/serine exporter CH61_3718 PF01810 LysE type translocator CH61_3719 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH61_3719 PF02142 MGS-like domain CH61_3719 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH61_3720 PF00117 Glutamine amidotransferase class-I CH61_3720 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CH61_3721 PF05173 Dihydrodipicolinate reductase, C-terminus CH61_3721 PF01113 Dihydrodipicolinate reductase, N-terminus CH61_3722 PF01797 Transposase IS200 like CH61_3723 PF01797 Transposase IS200 like CH61_3724 PF02401 LytB protein CH61_3725 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH61_3726 PF01252 Signal peptidase (SPase) II CH61_3727 PF08264 Anticodon-binding domain of tRNA CH61_3727 PF06827 Zinc finger found in FPG and IleRS CH61_3727 PF00133 tRNA synthetases class I (I, L, M and V) CH61_3728 PF06574 FAD synthetase CH61_3728 PF01687 Riboflavin kinase CH61_3729 PF01649 Ribosomal protein S20 CH61_3730 PF03466 LysR substrate binding domain CH61_3730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_3731 PF06965 Na+/H+ antiporter 1 CH61_3732 PF00226 DnaJ domain CH61_3732 PF00684 DnaJ central domain CH61_3732 PF01556 DnaJ C terminal domain CH61_3733 PF00012 Hsp70 protein CH61_3734 PF01184 GPR1/FUN34/yaaH family CH61_3736 PF07690 Major Facilitator Superfamily CH61_3737 PF00994 Probable molybdopterin binding domain CH61_3738 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH61_3739 PF03883 Peroxide stress protein YaaA CH61_3741 PF00291 Pyridoxal-phosphate dependent enzyme CH61_3741 PF14821 Threonine synthase N terminus CH61_3742 PF00288 GHMP kinases N terminal domain CH61_3742 PF08544 GHMP kinases C terminal CH61_3743 PF13840 ACT domain CH61_3743 PF00742 Homoserine dehydrogenase CH61_3743 PF01842 ACT domain CH61_3743 PF03447 Homoserine dehydrogenase, NAD binding domain CH61_3743 PF00696 Amino acid kinase family CH61_3746 PF00486 Transcriptional regulatory protein, C terminal CH61_3746 PF00072 Response regulator receiver domain CH61_3747 PF05981 CreA protein CH61_3749 PF00300 Histidine phosphatase superfamily (branch 1) CH61_3750 PF06445 GyrI-like small molecule binding domain CH61_3750 PF12833 Helix-turn-helix domain CH61_3751 PF01371 Trp repressor protein CH61_3752 PF01931 Protein of unknown function DUF84 CH61_3753 PF14718 Soluble lytic murein transglycosylase L domain CH61_3753 PF01464 Transglycosylase SLT domain CH61_3754 PF00689 Cation transporting ATPase, C-terminus CH61_3754 PF00690 Cation transporter/ATPase, N-terminus CH61_3756 PF00990 Diguanylate cyclase, GGDEF domain CH61_3756 PF17152 Periplasmic sensor domain CH61_3757 PF00691 OmpA family CH61_3758 PF12848 ABC transporter CH61_3758 PF00005 ABC transporter CH61_3759 PF12848 ABC transporter CH61_3759 PF00005 ABC transporter CH61_376 PF03143 Elongation factor Tu C-terminal domain CH61_376 PF03144 Elongation factor Tu domain 2 CH61_376 PF00009 Elongation factor Tu GTP binding domain CH61_3761 PF01381 Helix-turn-helix CH61_3761 PF13521 AAA domain CH61_3762 PF18073 Rubredoxin metal binding domain CH61_3763 PF18429 Domain of unknown function (DUF5609) CH61_3764 PF10144 Bacterial virulence factor haemolysin CH61_3765 PF01048 Phosphorylase superfamily CH61_3766 PF01676 Metalloenzyme superfamily CH61_3767 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CH61_3767 PF00591 Glycosyl transferase family, a/b domain CH61_3767 PF02885 Glycosyl transferase family, helical bundle domain CH61_3768 PF00591 Glycosyl transferase family, a/b domain CH61_3768 PF02885 Glycosyl transferase family, helical bundle domain CH61_3768 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CH61_3769 PF01791 DeoC/LacD family aldolase CH61_377 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CH61_3770 PF01773 Na+ dependent nucleoside transporter N-terminus CH61_3770 PF07662 Na+ dependent nucleoside transporter C-terminus CH61_3770 PF07670 Nucleoside recognition CH61_3771 PF01026 TatD related DNase CH61_3772 PF01734 Patatin-like phospholipase CH61_3773 PF07043 Protein of unknown function (DUF1328) CH61_3774 PF04972 BON domain CH61_3775 PF00009 Elongation factor Tu GTP binding domain CH61_3775 PF16658 Class II release factor RF3, C-terminal domain CH61_3775 PF03144 Elongation factor Tu domain 2 CH61_3776 PF00583 Acetyltransferase (GNAT) family CH61_3777 PF03603 DNA polymerase III psi subunit CH61_3778 PF05175 Methyltransferase small domain CH61_3778 PF08468 Methyltransferase small domain N-terminal CH61_378 PF00467 KOW motif CH61_378 PF02357 Transcription termination factor nusG CH61_3780 PF07256 Protein of unknown function (DUF1435) CH61_3781 PF00990 Diguanylate cyclase, GGDEF domain CH61_3782 PF01095 Pectinesterase CH61_3784 PF00873 AcrB/AcrD/AcrF family CH61_3785 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH61_3788 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH61_3789 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH61_3789 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH61_379 PF03946 Ribosomal protein L11, N-terminal domain CH61_379 PF00298 Ribosomal protein L11, RNA binding domain CH61_3790 PF04198 Putative sugar-binding domain CH61_3790 PF00325 Bacterial regulatory proteins, crp family CH61_3791 PF00325 Bacterial regulatory proteins, crp family CH61_3791 PF04198 Putative sugar-binding domain CH61_3792 PF00005 ABC transporter CH61_3793 PF02653 Branched-chain amino acid transport system / permease component CH61_3794 PF02653 Branched-chain amino acid transport system / permease component CH61_3795 PF13407 Periplasmic binding protein domain CH61_3796 PF01791 DeoC/LacD family aldolase CH61_3797 PF03992 Antibiotic biosynthesis monooxygenase CH61_3798 PF10696 Protein of unknown function (DUF2501) CH61_3799 PF00381 PTS HPr component phosphorylation site CH61_3799 PF02896 PEP-utilising enzyme, TIM barrel domain CH61_3799 PF00391 PEP-utilising enzyme, mobile domain CH61_3799 PF05524 PEP-utilising enzyme, N-terminal CH61_3799 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH61_38 PF05068 Mannitol repressor CH61_380 PF00687 Ribosomal protein L1p/L10e family CH61_3801 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH61_3802 PF12833 Helix-turn-helix domain CH61_3803 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH61_3805 PF05987 Bacterial protein of unknown function (DUF898) CH61_3809 PF00665 Integrase core domain CH61_381 PF00466 Ribosomal protein L10 CH61_3814 PF01555 DNA methylase CH61_3815 PF01527 Transposase CH61_3817 PF12102 Domain of unknown function (DUF3578) CH61_3817 PF07728 AAA domain (dynein-related subfamily) CH61_3818 PF00665 Integrase core domain CH61_3818 PF02796 Helix-turn-helix domain of resolvase CH61_3819 PF00665 Integrase core domain CH61_3819 PF02796 Helix-turn-helix domain of resolvase CH61_382 PF16320 Ribosomal protein L7/L12 dimerisation domain CH61_382 PF00542 Ribosomal protein L7/L12 C-terminal domain CH61_3820 PF01695 IstB-like ATP binding protein CH61_3822 PF07338 Protein of unknown function (DUF1471) CH61_3823 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH61_3823 PF18158 Adaptive response protein AidB N-terminal domain CH61_3823 PF02770 Acyl-CoA dehydrogenase, middle domain CH61_3824 PF00588 SpoU rRNA Methylase family CH61_3824 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH61_3825 PF00575 S1 RNA binding domain CH61_3825 PF00773 RNB domain CH61_3825 PF08206 Ribonuclease B OB domain CH61_3825 PF08461 Ribonuclease R winged-helix domain CH61_3825 PF17876 Cold shock domain CH61_3826 PF02082 Transcriptional regulator CH61_3827 PF00709 Adenylosuccinate synthetase CH61_3828 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CH61_3829 PF01145 SPFH domain / Band 7 family CH61_383 PF04560 RNA polymerase Rpb2, domain 7 CH61_383 PF00562 RNA polymerase Rpb2, domain 6 CH61_383 PF10385 RNA polymerase beta subunit external 1 domain CH61_383 PF04565 RNA polymerase Rpb2, domain 3 CH61_383 PF04561 RNA polymerase Rpb2, domain 2 CH61_383 PF04563 RNA polymerase beta subunit CH61_3830 PF01145 SPFH domain / Band 7 family CH61_3830 PF12221 Bacterial membrane protein N terminal CH61_3831 PF16360 GTP-binding GTPase Middle Region CH61_3831 PF13167 GTP-binding GTPase N-terminal CH61_3831 PF01926 50S ribosome-binding GTPase CH61_3832 PF17209 Hfq protein CH61_3834 PF08676 MutL C terminal dimerisation domain CH61_3834 PF01119 DNA mismatch repair protein, C-terminal domain CH61_3835 PF01520 N-acetylmuramoyl-L-alanine amidase CH61_3836 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CH61_3837 PF01256 Carbohydrate kinase CH61_3837 PF03853 YjeF-related protein N-terminus CH61_3838 PF08331 Domain of unknown function (DUF1730) CH61_384 PF04997 RNA polymerase Rpb1, domain 1 CH61_384 PF04983 RNA polymerase Rpb1, domain 3 CH61_384 PF04998 RNA polymerase Rpb1, domain 5 CH61_384 PF00623 RNA polymerase Rpb1, domain 2 CH61_384 PF05000 RNA polymerase Rpb1, domain 4 CH61_3841 PF00929 Exonuclease CH61_3842 PF03193 RsgA GTPase CH61_3843 PF02666 Phosphatidylserine decarboxylase CH61_3844 PF12795 Mechanosensitive ion channel porin domain CH61_3844 PF00924 Mechanosensitive ion channel CH61_3844 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH61_3845 PF00152 tRNA synthetases class II (D, K and N) CH61_3846 PF02910 Fumarate reductase flavoprotein C-term CH61_3846 PF00890 FAD binding domain CH61_3847 PF13085 2Fe-2S iron-sulfur cluster binding domain CH61_3847 PF13183 4Fe-4S dicluster domain CH61_3848 PF02300 Fumarate reductase subunit C CH61_3849 PF02313 Fumarate reductase subunit D CH61_385 PF04055 Radical SAM superfamily CH61_385 PF06968 Biotin and Thiamin Synthesis associated domain CH61_3850 PF01797 Transposase IS200 like CH61_3851 PF00893 Small Multidrug Resistance protein CH61_3852 PF08207 Elongation factor P (EF-P) KOW-like domain CH61_3852 PF01132 Elongation factor P (EF-P) OB domain CH61_3852 PF09285 Elongation factor P, C-terminal CH61_3853 PF04055 Radical SAM superfamily CH61_3854 PF13698 Domain of unknown function (DUF4156) CH61_3855 PF00118 TCP-1/cpn60 chaperonin family CH61_3856 PF00166 Chaperonin 10 Kd subunit CH61_3857 PF04186 FxsA cytoplasmic membrane protein CH61_3858 PF10415 Fumarase C C-terminus CH61_3858 PF00206 Lyase CH61_3859 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH61_386 PF05690 Thiazole biosynthesis protein ThiG CH61_3860 PF03091 CutA1 divalent ion tolerance protein CH61_3861 PF11412 Disulphide bond corrector protein DsbC CH61_3861 PF02683 Cytochrome C biogenesis protein transmembrane region CH61_3862 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH61_3862 PF01568 Molydopterin dinucleotide binding domain CH61_3862 PF00384 Molybdopterin oxidoreductase CH61_3863 PF12800 4Fe-4S binding domain CH61_3863 PF13247 4Fe-4S dicluster domain CH61_3864 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH61_3864 PF13247 4Fe-4S dicluster domain CH61_3864 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH61_3871 PF06379 L-rhamnose-proton symport protein (RhaT) CH61_3872 PF02311 AraC-like ligand binding domain CH61_3872 PF12833 Helix-turn-helix domain CH61_3873 PF02311 AraC-like ligand binding domain CH61_3873 PF12833 Helix-turn-helix domain CH61_3876 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH61_3876 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH61_3877 PF06134 L-rhamnose isomerase (RhaA) CH61_3878 PF00596 Class II Aldolase and Adducin N-terminal domain CH61_3879 PF00465 Iron-containing alcohol dehydrogenase CH61_388 PF00899 ThiF family CH61_3880 PF05336 L-rhamnose mutarotase CH61_3881 PF00436 Single-strand binding protein family CH61_3882 PF00005 ABC transporter CH61_3882 PF17760 UvrA interaction domain CH61_3882 PF17755 UvrA DNA-binding domain CH61_3883 PF04237 YjbR CH61_3884 PF00155 Aminotransferase class I and II CH61_3885 PF00842 Alanine racemase, C-terminal domain CH61_3885 PF01168 Alanine racemase, N-terminal domain CH61_3886 PF03796 DnaB-like helicase C terminal domain CH61_3886 PF00772 DnaB-like helicase N terminal domain CH61_3887 PF00107 Zinc-binding dehydrogenase CH61_3887 PF08240 Alcohol dehydrogenase GroES-like domain CH61_3888 PF09583 Phage shock protein G (Phageshock_PspG) CH61_3889 PF01207 Dihydrouridine synthase (Dus) CH61_389 PF02581 Thiamine monophosphate synthase CH61_3890 PF01475 Ferric uptake regulator family CH61_3891 PF00717 Peptidase S24-like CH61_3891 PF01726 LexA DNA binding domain CH61_3892 PF01219 Prokaryotic diacylglycerol kinase CH61_3893 PF01553 Acyltransferase CH61_3894 PF01040 UbiA prenyltransferase family CH61_3895 PF04345 Chorismate lyase CH61_3896 PF12951 Passenger-associated-transport-repeat CH61_3897 PF01565 FAD binding domain CH61_3897 PF08031 Berberine and berberine like CH61_390 PF13667 ThiC-associated domain CH61_390 PF01964 Radical SAM ThiC family CH61_3900 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH61_3901 PF00577 Outer membrane usher protein CH61_3901 PF13954 PapC N-terminal domain CH61_3901 PF13953 PapC C-terminal domain CH61_3903 PF02342 TerD domain CH61_3904 PF02342 TerD domain CH61_3905 PF03741 Integral membrane protein TerC family CH61_3906 PF05099 Tellurite resistance protein TerB CH61_3907 PF02342 TerD domain CH61_3908 PF02342 TerD domain CH61_391 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CH61_3912 PF15608 PELOTA RNA binding domain CH61_3912 PF11202 Phosphoribosyl transferase (PRTase) CH61_3916 PF04055 Radical SAM superfamily CH61_3917 PF06228 Haem utilisation ChuX/HutX CH61_3918 PF13460 NAD(P)H-binding CH61_3919 PF07715 TonB-dependent Receptor Plug Domain CH61_3919 PF00593 TonB dependent receptor CH61_392 PF09297 NADH pyrophosphatase zinc ribbon domain CH61_392 PF00293 NUDIX domain CH61_3920 PF05171 Haemin-degrading HemS.ChuX domain CH61_3921 PF01497 Periplasmic binding protein CH61_3922 PF01032 FecCD transport family CH61_3923 PF00005 ABC transporter CH61_3924 PF01053 Cys/Met metabolism PLP-dependent enzyme CH61_3925 PF03222 Tryptophan/tyrosine permease family CH61_3926 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_3926 PF03466 LysR substrate binding domain CH61_3927 PF01206 Sulfurtransferase TusA CH61_3928 PF04143 Sulphur transport CH61_3929 PF01312 FlhB HrpN YscU SpaS Family CH61_3930 PF01311 Bacterial export proteins, family 1 CH61_3931 PF01313 Bacterial export proteins, family 3 CH61_3932 PF00813 FliP family CH61_3933 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH61_3936 PF18269 T3SS EscN ATPase C-terminal domain CH61_3936 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH61_3937 PF00771 FHIPEP family CH61_394 PF01208 Uroporphyrinogen decarboxylase (URO-D) CH61_3940 PF01514 Secretory protein of YscJ/FliF family CH61_3944 PF12833 Helix-turn-helix domain CH61_3944 PF14525 AraC-binding-like domain CH61_3948 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH61_3948 PF00072 Response regulator receiver domain CH61_3948 PF00672 HAMP domain CH61_3948 PF00512 His Kinase A (phospho-acceptor) domain CH61_3948 PF01627 Hpt domain CH61_3948 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_3949 PF00072 Response regulator receiver domain CH61_3949 PF00196 Bacterial regulatory proteins, luxR family CH61_395 PF04493 Endonuclease V CH61_3950 PF00375 Sodium:dicarboxylate symporter family CH61_3951 PF13193 AMP-binding enzyme C-terminal domain CH61_3951 PF00501 AMP-binding enzyme CH61_3951 PF16177 Acetyl-coenzyme A synthetase N-terminus CH61_3952 PF04341 Protein of unknown function, DUF485 CH61_3953 PF00474 Sodium:solute symporter family CH61_3955 PF02796 Helix-turn-helix domain of resolvase CH61_3955 PF00665 Integrase core domain CH61_3956 PF01695 IstB-like ATP binding protein CH61_3957 PF00132 Bacterial transferase hexapeptide (six repeats) CH61_3958 PF08501 Shikimate dehydrogenase substrate binding domain CH61_3958 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CH61_3958 PF01488 Shikimate / quinate 5-dehydrogenase CH61_3959 PF01300 Telomere recombination CH61_396 PF04222 Protein of unknown function (DUF416) CH61_3960 PF01396 Topoisomerase DNA binding C4 zinc finger CH61_3961 PF04361 Protein of unknown function (DUF494) CH61_3962 PF02481 DNA recombination-mediator protein A CH61_3962 PF17782 DprA winged helix domain CH61_3963 PF01327 Polypeptide deformylase CH61_3964 PF00551 Formyl transferase CH61_3964 PF02911 Formyl transferase, C-terminal domain CH61_3965 PF01029 NusB family CH61_3965 PF01189 16S rRNA methyltransferase RsmB/F CH61_3966 PF02254 TrkA-N domain CH61_3966 PF02080 TrkA-C domain CH61_3967 PF01741 Large-conductance mechanosensitive channel, MscL CH61_3968 PF03889 Alternative ribosome-rescue factor A CH61_3969 PF13411 MerR HTH family regulatory protein CH61_397 PF00216 Bacterial DNA-binding protein CH61_3970 PF01196 Ribosomal protein L17 CH61_3971 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CH61_3971 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CH61_3971 PF01000 RNA polymerase Rpb3/RpoA insert domain CH61_3972 PF00163 Ribosomal protein S4/S9 N-terminal domain CH61_3972 PF01479 S4 domain CH61_3973 PF00411 Ribosomal protein S11 CH61_3974 PF00416 Ribosomal protein S13/S18 CH61_3975 PF00444 Ribosomal protein L36 CH61_3976 PF00344 SecY translocase CH61_3977 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CH61_3978 PF00327 Ribosomal protein L30p/L7e CH61_3979 PF03719 Ribosomal protein S5, C-terminal domain CH61_3979 PF00333 Ribosomal protein S5, N-terminal domain CH61_398 PF07356 Protein of unknown function (DUF1481) CH61_3980 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CH61_3981 PF00347 Ribosomal protein L6 CH61_3982 PF00410 Ribosomal protein S8 CH61_3983 PF00253 Ribosomal protein S14p/S29e CH61_3984 PF00673 ribosomal L5P family C-terminus CH61_3984 PF00281 Ribosomal protein L5 CH61_3985 PF00467 KOW motif CH61_3985 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CH61_3986 PF00238 Ribosomal protein L14p/L23e CH61_3987 PF00366 Ribosomal protein S17 CH61_3988 PF00831 Ribosomal L29 protein CH61_3989 PF00252 Ribosomal protein L16p/L10e CH61_399 PF02844 Phosphoribosylglycinamide synthetase, N domain CH61_399 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CH61_399 PF02843 Phosphoribosylglycinamide synthetase, C domain CH61_3990 PF00189 Ribosomal protein S3, C-terminal domain CH61_3990 PF07650 KH domain CH61_3991 PF00237 Ribosomal protein L22p/L17e CH61_3992 PF00203 Ribosomal protein S19 CH61_3993 PF03947 Ribosomal Proteins L2, C-terminal domain CH61_3993 PF00181 Ribosomal Proteins L2, RNA binding domain CH61_3994 PF00276 Ribosomal protein L23 CH61_3995 PF00573 Ribosomal protein L4/L1 family CH61_3996 PF00297 Ribosomal protein L3 CH61_3997 PF00338 Ribosomal protein S10p/S20e CH61_3998 PF00210 Ferritin-like domain CH61_3999 PF04324 BFD-like [2Fe-2S] binding domain CH61_4 PF01809 Putative membrane protein insertion efficiency factor CH61_40 PF10928 Protein of unknown function (DUF2810) CH61_400 PF02142 MGS-like domain CH61_400 PF01808 AICARFT/IMPCHase bienzyme CH61_4000 PF01797 Transposase IS200 like CH61_4001 PF03143 Elongation factor Tu C-terminal domain CH61_4001 PF03144 Elongation factor Tu domain 2 CH61_4001 PF00009 Elongation factor Tu GTP binding domain CH61_4002 PF00009 Elongation factor Tu GTP binding domain CH61_4002 PF03144 Elongation factor Tu domain 2 CH61_4002 PF14492 Elongation Factor G, domain II CH61_4002 PF00679 Elongation factor G C-terminus CH61_4002 PF03764 Elongation factor G, domain IV CH61_4003 PF00177 Ribosomal protein S7p/S5e CH61_4004 PF00164 Ribosomal protein S12/S23 CH61_4005 PF04077 DsrH like protein CH61_4006 PF02635 DsrE/DsrF-like family CH61_4007 PF02635 DsrE/DsrF-like family CH61_4008 PF13309 HTH domain CH61_4008 PF08348 YheO-like PAS domain CH61_4009 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH61_4009 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH61_4010 PF04102 SlyX CH61_4011 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH61_4012 PF09526 Probable metal-binding protein (DUF2387) CH61_4013 PF00999 Sodium/hydrogen exchanger family CH61_4013 PF02254 TrkA-N domain CH61_4014 PF02525 Flavodoxin-like fold CH61_4015 PF12848 ABC transporter CH61_4015 PF00005 ABC transporter CH61_4016 PF12848 ABC transporter CH61_4016 PF00005 ABC transporter CH61_4017 PF00535 Glycosyl transferase family 2 CH61_4019 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CH61_4020 PF00528 Binding-protein-dependent transport system inner membrane component CH61_4021 PF00005 ABC transporter CH61_4022 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH61_4023 PF01810 LysE type translocator CH61_4024 PF00561 alpha/beta hydrolase fold CH61_4025 PF06794 Uncharacterised protein family (UPF0270) CH61_4026 PF00485 Phosphoribulokinase / Uridine kinase family CH61_4028 PF02566 OsmC-like protein CH61_4029 PF00027 Cyclic nucleotide-binding domain CH61_4029 PF13545 Crp-like helix-turn-helix domain CH61_4030 PF12805 FUSC-like inner membrane protein yccS CH61_4031 PF00202 Aminotransferase class-III CH61_4032 PF00117 Glutamine amidotransferase class-I CH61_4033 PF05872 Bacterial protein of unknown function (DUF853) CH61_4036 PF11975 Family 4 glycosyl hydrolase C-terminal domain CH61_4036 PF02056 Family 4 glycosyl hydrolase CH61_4037 PF00356 Bacterial regulatory proteins, lacI family CH61_4039 PF07690 Major Facilitator Superfamily CH61_4040 PF07969 Amidohydrolase family CH61_4041 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH61_4041 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH61_4041 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH61_4041 PF04324 BFD-like [2Fe-2S] binding domain CH61_4041 PF18267 Rubredoxin NAD+ reductase C-terminal domain CH61_4042 PF13806 Rieske-like [2Fe-2S] domain CH61_4043 PF01226 Formate/nitrite transporter CH61_4044 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH61_4044 PF14824 Sirohaem biosynthesis protein central CH61_4044 PF10414 Sirohaem synthase dimerisation region CH61_4045 PF00579 tRNA synthetases class I (W and Y) CH61_4046 PF13419 Haloacid dehalogenase-like hydrolase CH61_4047 PF00834 Ribulose-phosphate 3 epimerase family CH61_4048 PF02086 D12 class N6 adenine-specific DNA methyltransferase CH61_4049 PF05036 Sporulation related domain CH61_4050 PF01761 3-dehydroquinate synthase CH61_4051 PF01202 Shikimate kinase CH61_4052 PF00263 Bacterial type II and III secretion system protein CH61_4052 PF03958 Bacterial type II/III secretion system short domain CH61_4057 PF00912 Transglycosylase CH61_4057 PF17092 Penicillin-binding protein OB-like domain CH61_4057 PF00905 Penicillin binding protein transpeptidase domain CH61_4058 PF00293 NUDIX domain CH61_4060 PF07095 Intracellular growth attenuator protein IgaA CH61_4061 PF13419 Haloacid dehalogenase-like hydrolase CH61_4062 PF01479 S4 domain CH61_4063 PF01430 Hsp33 protein CH61_4064 PF01293 Phosphoenolpyruvate carboxykinase CH61_4065 PF00672 HAMP domain CH61_4065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_4065 PF00512 His Kinase A (phospho-acceptor) domain CH61_4066 PF00072 Response regulator receiver domain CH61_4066 PF00486 Transcriptional regulatory protein, C terminal CH61_4067 PF01272 Transcription elongation factor, GreA/GreB, C-term CH61_4067 PF03449 Transcription elongation factor, N-terminal CH61_4068 PF17674 HHH domain CH61_4068 PF09371 Tex-like protein N-terminal domain CH61_4068 PF00575 S1 RNA binding domain CH61_4068 PF16921 Tex protein YqgF-like domain CH61_4069 PF04023 FeoA domain CH61_4070 PF07670 Nucleoside recognition CH61_4070 PF02421 Ferrous iron transport protein B CH61_4070 PF17910 FeoB cytosolic helical domain CH61_4070 PF07664 Ferrous iron transport protein B C terminus CH61_4071 PF09012 FeoC like transcriptional regulator CH61_4072 PF07338 Protein of unknown function (DUF1471) CH61_4073 PF00561 alpha/beta hydrolase fold CH61_4074 PF00156 Phosphoribosyl transferase domain CH61_4075 PF01106 NifU-like domain CH61_4075 PF01521 Iron-sulphur cluster biosynthesis CH61_4076 PF02446 4-alpha-glucanotransferase CH61_4077 PF00343 Carbohydrate phosphorylase CH61_4078 PF00343 Carbohydrate phosphorylase CH61_4079 PF00196 Bacterial regulatory proteins, luxR family CH61_4079 PF17874 MalT-like TPR region CH61_4080 PF00581 Rhodanese-like domain CH61_4081 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CH61_4081 PF01694 Rhomboid family CH61_4082 PF08220 DeoR-like helix-turn-helix domain CH61_4082 PF00455 DeoR C terminal sensor domain CH61_4084 PF13276 HTH-like domain CH61_4084 PF00665 Integrase core domain CH61_4084 PF13333 Integrase core domain CH61_4085 PF02219 Methylenetetrahydrofolate reductase CH61_4086 PF00696 Amino acid kinase family CH61_4086 PF03447 Homoserine dehydrogenase, NAD binding domain CH61_4086 PF00742 Homoserine dehydrogenase CH61_4087 PF01053 Cys/Met metabolism PLP-dependent enzyme CH61_4088 PF01053 Cys/Met metabolism PLP-dependent enzyme CH61_4089 PF01340 Met Apo-repressor, MetJ CH61_4090 PF05360 yiaA/B two helix domain CH61_4091 PF01197 Ribosomal protein L31 CH61_4092 PF00270 DEAD/DEAH box helicase CH61_4092 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CH61_4092 PF00271 Helicase conserved C-terminal domain CH61_4092 PF18074 Primosomal protein N C-terminal domain CH61_4092 PF17764 3′ DNA-binding domain (3′BD) CH61_4094 PF00356 Bacterial regulatory proteins, lacI family CH61_4095 PF05036 Sporulation related domain CH61_4096 PF00227 Proteasome subunit CH61_4097 PF10431 C-terminal, D2-small domain, of ClpB protein CH61_4097 PF00004 ATPase family associated with various cellular activities (AAA) CH61_4097 PF07724 AAA domain (Cdc48 subfamily) CH61_4098 PF01040 UbiA prenyltransferase family CH61_4099 PF03737 Aldolase/RraA CH61_4102 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH61_4102 PF00529 HlyD membrane-fusion protein of T1SS CH61_4103 PF03412 Peptidase C39 family CH61_4103 PF00005 ABC transporter CH61_4103 PF00664 ABC transporter transmembrane region CH61_4104 PF00665 Integrase core domain CH61_4104 PF02796 Helix-turn-helix domain of resolvase CH61_4105 PF01695 IstB-like ATP binding protein CH61_4106 PF00005 ABC transporter CH61_4106 PF00664 ABC transporter transmembrane region CH61_4106 PF03412 Peptidase C39 family CH61_4107 PF01797 Transposase IS200 like CH61_4108 PF06005 Cell division protein ZapB CH61_4109 PF00230 Major intrinsic protein CH61_411 PF04204 Homoserine O-succinyltransferase CH61_4110 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH61_4110 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH61_4111 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CH61_4112 PF00970 Oxidoreductase FAD-binding domain CH61_4112 PF00175 Oxidoreductase NAD-binding domain CH61_4113 PF05656 Protein of unknown function (DUF805) CH61_4114 PF07305 Protein of unknown function (DUF1454) CH61_4115 PF00121 Triosephosphate isomerase CH61_4116 PF03466 LysR substrate binding domain CH61_4116 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_4117 PF02585 GlcNAc-PI de-N-acetylase CH61_4118 PF03737 Aldolase/RraA CH61_4119 PF00939 Sodium:sulfate symporter transmembrane region CH61_412 PF01274 Malate synthase CH61_4123 PF00365 Phosphofructokinase CH61_4124 PF16916 Dimerisation domain of Zinc Transporter CH61_4124 PF01545 Cation efflux family CH61_4125 PF04754 Putative transposase, YhgA-like CH61_4126 PF07813 LTXXQ motif family protein CH61_4127 PF00486 Transcriptional regulatory protein, C terminal CH61_4127 PF00072 Response regulator receiver domain CH61_4128 PF16527 Two-component sensor protein CpxA, periplasmic domain CH61_4128 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_4128 PF00512 His Kinase A (phospho-acceptor) domain CH61_4128 PF00672 HAMP domain CH61_4129 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH61_4129 PF12833 Helix-turn-helix domain CH61_4129 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH61_4129 PF02805 Metal binding domain of Ada CH61_413 PF00463 Isocitrate lyase family CH61_4130 PF00588 SpoU rRNA Methylase family CH61_4131 PF00132 Bacterial transferase hexapeptide (six repeats) CH61_4131 PF06426 Serine acetyltransferase, N-terminal CH61_4132 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CH61_4132 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CH61_4133 PF02556 Preprotein translocase subunit SecB CH61_4134 PF00462 Glutaredoxin CH61_4135 PF00581 Rhodanese-like domain CH61_4136 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CH61_4136 PF01676 Metalloenzyme superfamily CH61_4137 PF01551 Peptidase family M23 CH61_4138 PF04748 Divergent polysaccharide deacetylase CH61_4139 PF04748 Divergent polysaccharide deacetylase CH61_414 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CH61_4140 PF00107 Zinc-binding dehydrogenase CH61_4140 PF08240 Alcohol dehydrogenase GroES-like domain CH61_4141 PF00155 Aminotransferase class I and II CH61_4142 PF01370 NAD dependent epimerase/dehydratase family CH61_4143 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH61_4144 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH61_4145 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CH61_4146 PF00535 Glycosyl transferase family 2 CH61_4147 PF01467 Cytidylyltransferase-like CH61_4148 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CH61_4148 PF06827 Zinc finger found in FPG and IleRS CH61_4148 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CH61_4149 PF00471 Ribosomal protein L33 CH61_415 PF09339 IclR helix-turn-helix domain CH61_415 PF01614 Bacterial transcriptional regulator CH61_4150 PF00830 Ribosomal L28 family CH61_4151 PF04002 RadC-like JAB domain CH61_4152 PF04127 DNA / pantothenate metabolism flavoprotein CH61_4152 PF02441 Flavoprotein CH61_4153 PF00692 dUTPase CH61_4154 PF00440 Bacterial regulatory proteins, tetR family CH61_4155 PF00156 Phosphoribosyl transferase domain CH61_4156 PF03725 3' exoribonuclease family, domain 2 CH61_4156 PF01138 3' exoribonuclease family, domain 1 CH61_4157 PF08340 Domain of unknown function (DUF1732) CH61_4157 PF03755 YicC-like family, N-terminal region CH61_4158 PF03458 UPF0126 domain CH61_4159 PF01653 NAD-dependent DNA ligase adenylation domain CH61_4159 PF03120 NAD-dependent DNA ligase OB-fold domain CH61_416 PF09339 IclR helix-turn-helix domain CH61_416 PF01614 Bacterial transcriptional regulator CH61_4160 PF00625 Guanylate kinase CH61_4161 PF01192 RNA polymerase Rpb6 CH61_4162 PF04607 Region found in RelA / SpoT proteins CH61_4162 PF02824 TGS domain CH61_4162 PF13291 ACT domain CH61_4163 PF12105 SpoU, rRNA methylase, C-terminal CH61_4163 PF00588 SpoU rRNA Methylase family CH61_4164 PF00270 DEAD/DEAH box helicase CH61_4164 PF00271 Helicase conserved C-terminal domain CH61_4164 PF17191 RecG wedge domain CH61_4165 PF03616 Sodium/glutamate symporter CH61_4166 PF00860 Permease family CH61_4167 PF05170 AsmA family CH61_4168 PF00583 Acetyltransferase (GNAT) family CH61_4168 PF09500 Putative thioesterase (yiiD_Cterm) CH61_4169 PF02796 Helix-turn-helix domain of resolvase CH61_4169 PF00665 Integrase core domain CH61_417 PF02607 B12 binding domain CH61_417 PF02574 Homocysteine S-methyltransferase CH61_417 PF02310 B12 binding domain CH61_417 PF02965 Vitamin B12 dependent methionine synthase, activation domain CH61_417 PF00809 Pterin binding enzyme CH61_4170 PF01695 IstB-like ATP binding protein CH61_4171 PF02580 D-Tyr-tRNA(Tyr) deacylase CH61_4172 PF03631 Virulence factor BrkB CH61_4173 PF13419 Haloacid dehalogenase-like hydrolase CH61_4175 PF00120 Glutamine synthetase, catalytic domain CH61_4175 PF03951 Glutamine synthetase, beta-Grasp domain CH61_4176 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_4176 PF00512 His Kinase A (phospho-acceptor) domain CH61_4176 PF00989 PAS fold CH61_4177 PF02954 Bacterial regulatory protein, Fis family CH61_4177 PF00158 Sigma-54 interaction domain CH61_4177 PF00072 Response regulator receiver domain CH61_4178 PF06969 HemN C-terminal domain CH61_4178 PF04055 Radical SAM superfamily CH61_4179 PF04220 Der GTPase activator (YihI) CH61_418 PF13332 Hemagglutinin repeat CH61_418 PF05860 haemagglutination activity domain CH61_4180 PF01926 50S ribosome-binding GTPase CH61_4181 PF01797 Transposase IS200 like CH61_4183 PF01367 5'-3' exonuclease, C-terminal SAM fold CH61_4183 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH61_4183 PF00476 DNA polymerase family A CH61_4183 PF01612 3'-5' exonuclease CH61_4184 PF01323 DSBA-like thioredoxin domain CH61_4185 PF01636 Phosphotransferase enzyme family CH61_4186 PF06288 Protein of unknown function (DUF1040) CH61_4187 PF12804 MobA-like NTP transferase domain CH61_4188 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CH61_4189 PF00872 Transposase, Mutator family CH61_419 PF08479 POTRA domain, ShlB-type CH61_419 PF17287 POTRA domain CH61_419 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH61_4190 PF00872 Transposase, Mutator family CH61_4195 PF00392 Bacterial regulatory proteins, gntR family CH61_4195 PF07729 FCD domain CH61_4197 PF07690 Major Facilitator Superfamily CH61_4198 PF00294 pfkB family carbohydrate kinase CH61_4199 PF05025 RbsD / FucU transport protein family CH61_420 PF00696 Amino acid kinase family CH61_420 PF01842 ACT domain CH61_4200 PF02705 K+ potassium transporter CH61_4201 PF17868 AAA lid domain CH61_4201 PF12592 Protein of unknown function (DUF3763) CH61_4201 PF07728 AAA domain (dynein-related subfamily) CH61_4202 PF05762 VWA domain containing CoxE-like protein CH61_4203 PF03590 Aspartate-ammonia ligase CH61_4204 PF01037 Lrp/AsnC ligand binding domain CH61_4205 PF00258 Flavodoxin CH61_4206 PF01134 Glucose inhibited division protein A CH61_4206 PF13932 GidA associated domain CH61_4207 PF02527 rRNA small subunit methyltransferase G CH61_4208 PF03899 ATP synthase I chain CH61_4209 PF00119 ATP synthase A chain CH61_421 PF00342 Phosphoglucose isomerase CH61_4210 PF00137 ATP synthase subunit C CH61_4211 PF00430 ATP synthase B/B' CF(0) CH61_4212 PF00213 ATP synthase delta (OSCP) subunit CH61_4213 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH61_4213 PF00306 ATP synthase alpha/beta chain, C terminal domain CH61_4213 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH61_4214 PF00231 ATP synthase CH61_4215 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH61_4215 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH61_4216 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CH61_4216 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CH61_4217 PF00132 Bacterial transferase hexapeptide (six repeats) CH61_4217 PF12804 MobA-like NTP transferase domain CH61_4218 PF01380 SIS domain CH61_4219 PF12849 PBP superfamily domain CH61_422 PF06146 Phosphate-starvation-inducible E CH61_4220 PF00528 Binding-protein-dependent transport system inner membrane component CH61_4221 PF00528 Binding-protein-dependent transport system inner membrane component CH61_4222 PF00005 ABC transporter CH61_4223 PF01895 PhoU domain CH61_4225 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH61_4226 PF00528 Binding-protein-dependent transport system inner membrane component CH61_4227 PF00528 Binding-protein-dependent transport system inner membrane component CH61_4228 PF13419 Haloacid dehalogenase-like hydrolase CH61_4229 PF00860 Permease family CH61_423 PF00528 Binding-protein-dependent transport system inner membrane component CH61_4231 PF01527 Transposase CH61_4232 PF09013 YopH, N-terminal CH61_4233 PF02108 Flagellar assembly protein FliH CH61_4234 PF06578 YOP proteins translocation protein K (YscK) CH61_4235 PF01514 Secretory protein of YscJ/FliF family CH61_4236 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI CH61_4237 PF09025 YopR, type III needle-polymerisation regulator CH61_4238 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) CH61_4239 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF CH61_424 PF14785 Maltose transport system permease protein MalF P2 domain CH61_424 PF00528 Binding-protein-dependent transport system inner membrane component CH61_4240 PF08988 Type III secretion system, cytoplasmic E component of needle CH61_4241 PF16693 Inner membrane component of T3SS, periplasmic domain CH61_4241 PF16697 Inner membrane component of T3SS, cytoplasmic domain CH61_4243 PF05932 Tir chaperone protein (CesT) family CH61_4244 PF12833 Helix-turn-helix domain CH61_4244 PF02311 AraC-like ligand binding domain CH61_4246 PF01312 FlhB HrpN YscU SpaS Family CH61_4247 PF01311 Bacterial export proteins, family 1 CH61_4248 PF01313 Bacterial export proteins, family 3 CH61_4249 PF00813 FliP family CH61_425 PF01547 Bacterial extracellular solute-binding protein CH61_4250 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH61_4251 PF02120 Flagellar hook-length control protein FliK CH61_4252 PF07321 Type III secretion protein YscO CH61_4253 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH61_4253 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH61_4253 PF18269 T3SS EscN ATPase C-terminal domain CH61_4254 PF07201 HrpJ-like domain CH61_4255 PF09059 TyeA CH61_4257 PF09474 Type III secretion system YscX (type_III_YscX) CH61_4259 PF00771 FHIPEP family CH61_4260 PF09621 Type III secretion system regulator (LcrR) CH61_4261 PF07216 LcrG protein CH61_4262 PF04792 V antigen (LcrV) protein CH61_4263 PF07720 Tetratricopeptide repeat CH61_4264 PF04888 Secretion system effector C (SseC) like family CH61_4265 PF05844 YopD protein CH61_4267 PF12468 Type III secretion system leucine rich repeat protein CH61_427 PF17912 MalK OB fold domain CH61_427 PF00005 ABC transporter CH61_4270 PF05932 Tir chaperone protein (CesT) family CH61_4271 PF03543 Yersinia/Haemophilus virulence surface antigen CH61_4273 PF05818 Enterobacterial TraT complement resistance protein CH61_4275 PF13276 HTH-like domain CH61_4275 PF00665 Integrase core domain CH61_4275 PF13333 Integrase core domain CH61_4277 PF13614 AAA domain CH61_4278 PF02195 ParB-like nuclease domain CH61_4278 PF18090 Centromere-binding protein HTH domain CH61_428 PF02264 LamB porin CH61_4280 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH CH61_4282 PF03545 Yersinia virulence determinant (YopE) CH61_4282 PF09020 YopE, N terminal CH61_4283 PF05932 Tir chaperone protein (CesT) family CH61_4284 PF13683 Integrase core domain CH61_4284 PF13276 HTH-like domain CH61_4286 PF00665 Integrase core domain CH61_4287 PF01695 IstB-like ATP binding protein CH61_4288 PF00665 Integrase core domain CH61_4288 PF02796 Helix-turn-helix domain of resolvase CH61_429 PF07148 Maltose operon periplasmic protein precursor (MalM) CH61_4290 PF01695 IstB-like ATP binding protein CH61_4292 PF13276 HTH-like domain CH61_4292 PF13683 Integrase core domain CH61_4293 PF01527 Transposase CH61_4296 PF00239 Resolvase, N terminal domain CH61_4296 PF02796 Helix-turn-helix domain of resolvase CH61_4298 PF01526 Tn3 transposase DDE domain CH61_4298 PF13700 Domain of unknown function (DUF4158) CH61_4299 PF05658 Head domain of trimeric autotransporter adhesin CH61_4299 PF05662 Coiled stalk of trimeric autotransporter adhesin CH61_4299 PF03895 YadA-like membrane anchor domain CH61_4301 PF05658 Head domain of trimeric autotransporter adhesin CH61_4301 PF05662 Coiled stalk of trimeric autotransporter adhesin CH61_4301 PF03895 YadA-like membrane anchor domain CH61_4307 PF10723 Replication regulatory protein RepB CH61_4308 PF02387 IncFII RepA protein family CH61_431 PF05638 Type VI secretion system effector, Hcp CH61_4316 PF09632 Rac1-binding domain CH61_4316 PF00069 Protein kinase domain CH61_4318 PF13683 Integrase core domain CH61_4318 PF13276 HTH-like domain CH61_4319 PF00102 Protein-tyrosine phosphatase CH61_4319 PF09013 YopH, N-terminal CH61_4320 PF13276 HTH-like domain CH61_4320 PF13683 Integrase core domain CH61_4327 PF07128 Protein of unknown function (DUF1380) CH61_4329 PF01555 DNA methylase CH61_4332 PF02195 ParB-like nuclease domain CH61_4332 PF08775 ParB family CH61_4333 PF13614 AAA domain CH61_4333 PF18607 ParA helix turn helix domain CH61_4336 PF00239 Resolvase, N terminal domain CH61_4336 PF02796 Helix-turn-helix domain of resolvase CH61_4337 PF04754 Putative transposase, YhgA-like CH61_4339 PF13091 PLD-like domain CH61_4341 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CH61_4342 PF04754 Putative transposase, YhgA-like CH61_4343 PF02371 Transposase IS116/IS110/IS902 family CH61_4343 PF01548 Transposase CH61_4344 PF00872 Transposase, Mutator family CH61_4345 PF12833 Helix-turn-helix domain CH61_4345 PF06445 GyrI-like small molecule binding domain CH61_4346 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH61_4346 PF02753 Pili assembly chaperone PapD, C-terminal domain CH61_4348 PF13954 PapC N-terminal domain CH61_4348 PF13953 PapC C-terminal domain CH61_4348 PF00577 Outer membrane usher protein CH61_4349 PF09255 Caf1 Capsule antigen CH61_435 PF13333 Integrase core domain CH61_435 PF00665 Integrase core domain CH61_435 PF13276 HTH-like domain CH61_4353 PF06213 Cobalamin biosynthesis protein CobT CH61_4353 PF11775 Cobalamin biosynthesis protein CobT VWA domain CH61_4355 PF02811 PHP domain CH61_4355 PF14579 Helix-hairpin-helix motif CH61_4355 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH61_4355 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH61_4356 PF00665 Integrase core domain CH61_4356 PF02796 Helix-turn-helix domain of resolvase CH61_4358 PF01695 IstB-like ATP binding protein CH61_4359 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH61_4359 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH61_4359 PF14579 Helix-hairpin-helix motif CH61_4359 PF02811 PHP domain CH61_4365 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH61_4365 PF01367 5'-3' exonuclease, C-terminal SAM fold CH61_4367 PF00154 recA bacterial DNA recombination protein CH61_4376 PF01051 Initiator Replication protein CH61_438 PF02796 Helix-turn-helix domain of resolvase CH61_438 PF00665 Integrase core domain CH61_44 PF00672 HAMP domain CH61_44 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH61_44 PF02203 Tar ligand binding domain homologue CH61_440 PF01695 IstB-like ATP binding protein CH61_441 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH61_441 PF01367 5'-3' exonuclease, C-terminal SAM fold CH61_448 PF17871 AAA lid domain CH61_448 PF10431 C-terminal, D2-small domain, of ClpB protein CH61_448 PF07724 AAA domain (Cdc48 subfamily) CH61_448 PF00004 ATPase family associated with various cellular activities (AAA) CH61_45 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH61_45 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH61_455 PF04717 Type VI secretion system, phage-baseplate injector CH61_458 PF03527 RHS protein CH61_458 PF05593 RHS Repeat CH61_458 PF14220 Domain of unknown function (DUF4329) CH61_46 PF02634 FdhD/NarQ family CH61_464 PF04717 Type VI secretion system, phage-baseplate injector CH61_466 PF03527 RHS protein CH61_466 PF05593 RHS Repeat CH61_469 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH61_469 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH61_47 PF01568 Molydopterin dinucleotide binding domain CH61_47 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH61_47 PF00384 Molybdopterin oxidoreductase CH61_470 PF02311 AraC-like ligand binding domain CH61_470 PF12833 Helix-turn-helix domain CH61_471 PF05025 RbsD / FucU transport protein family CH61_472 PF00294 pfkB family carbohydrate kinase CH61_474 PF03358 NADPH-dependent FMN reductase CH61_475 PF09084 NMT1/THI5 like CH61_476 PF00296 Luciferase-like monooxygenase CH61_477 PF00528 Binding-protein-dependent transport system inner membrane component CH61_478 PF00005 ABC transporter CH61_479 PF04221 RelB antitoxin CH61_48 PF01568 Molydopterin dinucleotide binding domain CH61_48 PF00384 Molybdopterin oxidoreductase CH61_48 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH61_480 PF00860 Permease family CH61_481 PF00999 Sodium/hydrogen exchanger family CH61_483 PF03279 Bacterial lipid A biosynthesis acyltransferase CH61_485 PF00005 ABC transporter CH61_486 PF02653 Branched-chain amino acid transport system / permease component CH61_488 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH61_488 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH61_489 PF01380 SIS domain CH61_489 PF00571 CBS domain CH61_49 PF13247 4Fe-4S dicluster domain CH61_49 PF09163 Formate dehydrogenase N, transmembrane CH61_490 PF02798 Glutathione S-transferase, N-terminal domain CH61_493 PF01797 Transposase IS200 like CH61_494 PF00313 'Cold-shock' DNA-binding domain CH61_495 PF00313 'Cold-shock' DNA-binding domain CH61_496 PF05433 Glycine zipper 2TM domain CH61_497 PF00753 Metallo-beta-lactamase superfamily CH61_498 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CH61_498 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH61_499 PF02627 Carboxymuconolactone decarboxylase family CH61_5 PF00825 Ribonuclease P CH61_50 PF01292 Prokaryotic cytochrome b561 CH61_500 PF07690 Major Facilitator Superfamily CH61_503 PF02954 Bacterial regulatory protein, Fis family CH61_504 PF01207 Dihydrouridine synthase (Dus) CH61_506 PF00474 Sodium:solute symporter family CH61_507 PF06196 Protein of unknown function (DUF997) CH61_509 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH61_509 PF02785 Biotin carboxylase C-terminal domain CH61_509 PF00289 Biotin carboxylase, N-terminal domain CH61_51 PF04216 Protein involved in formate dehydrogenase formation CH61_510 PF00364 Biotin-requiring enzyme CH61_511 PF01220 Dehydroquinase class II CH61_512 PF01794 Ferric reductase like transmembrane component CH61_513 PF00174 Oxidoreductase molybdopterin binding domain CH61_514 PF00107 Zinc-binding dehydrogenase CH61_514 PF08240 Alcohol dehydrogenase GroES-like domain CH61_515 PF00990 Diguanylate cyclase, GGDEF domain CH61_515 PF17157 Gammaproteobacterial periplasmic sensor domain CH61_515 PF00563 EAL domain CH61_517 PF04085 rod shape-determining protein MreC CH61_518 PF04093 rod shape-determining protein MreD CH61_519 PF02545 Maf-like protein CH61_52 PF12390 Selenocysteine synthase N terminal CH61_52 PF03841 L-seryl-tRNA selenium transferase CH61_520 PF00575 S1 RNA binding domain CH61_520 PF10150 Ribonuclease E/G family CH61_521 PF13116 Protein of unknown function CH61_521 PF13502 AsmA-like C-terminal region CH61_522 PF00795 Carbon-nitrogen hydrolase CH61_523 PF01523 Putative modulator of DNA gyrase CH61_524 PF18807 Tripartite Tc toxins repeat CH61_524 PF14431 YwqJ-like deaminase CH61_525 PF05785 Rho-activating domain of cytotoxic necrotizing factor CH61_525 PF18807 Tripartite Tc toxins repeat CH61_529 PF12255 Insecticide toxin TcdB middle/C-terminal region CH61_529 PF12256 Insecticide toxin TcdB middle/N-terminal region CH61_529 PF03534 Salmonella virulence plasmid 65kDa B protein CH61_533 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_533 PF03466 LysR substrate binding domain CH61_534 PF03466 LysR substrate binding domain CH61_534 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_535 PF07869 Protein of unknown function (DUF1656) CH61_536 PF13533 Biotin-lipoyl like CH61_537 PF04632 Fusaric acid resistance protein family CH61_538 PF00171 Aldehyde dehydrogenase family CH61_539 PF00171 Aldehyde dehydrogenase family CH61_541 PF01337 Barstar (barnase inhibitor) CH61_542 PF04751 Protein of unknown function (DUF615) CH61_543 PF01523 Putative modulator of DNA gyrase CH61_545 PF07361 Cytochrome b562 CH61_546 PF01272 Transcription elongation factor, GreA/GreB, C-term CH61_546 PF14760 Rnk N-terminus CH61_547 PF00128 Alpha amylase, catalytic domain CH61_547 PF11941 Domain of unknown function (DUF3459) CH61_548 PF00367 phosphotransferase system, EIIB CH61_548 PF02378 Phosphotransferase system, EIIC CH61_549 PF00356 Bacterial regulatory proteins, lacI family CH61_55 PF01526 Tn3 transposase DDE domain CH61_55 PF13700 Domain of unknown function (DUF4158) CH61_551 PF01695 IstB-like ATP binding protein CH61_555 PF02796 Helix-turn-helix domain of resolvase CH61_555 PF00665 Integrase core domain CH61_556 PF01042 Endoribonuclease L-PSP CH61_557 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CH61_557 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CH61_558 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH61_558 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH61_559 PF00381 PTS HPr component phosphorylation site CH61_560 PF03668 P-loop ATPase protein family CH61_561 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH61_562 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH61_563 PF04963 Sigma-54 factor, core binding domain CH61_563 PF00309 Sigma-54 factor, Activator interacting domain (AID) CH61_563 PF04552 Sigma-54, DNA binding domain CH61_564 PF00005 ABC transporter CH61_564 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH61_565 PF03968 OstA-like protein CH61_566 PF06835 Lipopolysaccharide-assembly, LptC-related CH61_568 PF00571 CBS domain CH61_568 PF01380 SIS domain CH61_569 PF01699 Sodium/calcium exchanger protein CH61_570 PF00005 ABC transporter CH61_571 PF02405 Permease MlaE CH61_572 PF02470 MlaD protein CH61_573 PF05494 MlaC protein CH61_574 PF13466 STAS domain CH61_575 PF01722 BolA-like protein CH61_576 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH61_577 PF13180 PDZ domain CH61_578 PF01797 Transposase IS200 like CH61_579 PF13180 PDZ domain CH61_579 PF00595 PDZ domain CH61_580 PF06295 Protein of unknown function (DUF1043) CH61_581 PF03969 AFG1-like ATPase CH61_582 PF00572 Ribosomal protein L13 CH61_583 PF00380 Ribosomal protein S9/S16 CH61_584 PF00043 Glutathione S-transferase, C-terminal domain CH61_584 PF02798 Glutathione S-transferase, N-terminal domain CH61_585 PF04386 Stringent starvation protein B CH61_587 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH61_587 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH61_588 PF01493 GXGXG motif CH61_588 PF01645 Conserved region in glutamate synthase CH61_588 PF04898 Glutamate synthase central domain CH61_588 PF00310 Glutamine amidotransferases class-II CH61_589 PF04055 Radical SAM superfamily CH61_589 PF16199 Radical_SAM C-terminal domain CH61_590 PF18415 Histidine kinase receptor ArcB trans-membrane domain CH61_590 PF00072 Response regulator receiver domain CH61_590 PF00989 PAS fold CH61_590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_590 PF00512 His Kinase A (phospho-acceptor) domain CH61_590 PF01627 Hpt domain CH61_592 PF00912 Transglycosylase CH61_593 PF04972 BON domain CH61_594 PF13580 SIS domain CH61_595 PF02021 Uncharacterised protein family UPF0102 CH61_596 PF04348 LppC putative lipoprotein CH61_597 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH61_598 PF17954 Quercetinase C-terminal cupin domain CH61_598 PF02678 Pirin CH61_599 PF03466 LysR substrate binding domain CH61_599 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH61_6 PF00468 Ribosomal protein L34 CH61_60 PF07690 Major Facilitator Superfamily CH61_600 PF13409 Glutathione S-transferase, N-terminal domain CH61_601 PF01695 IstB-like ATP binding protein CH61_604 PF02796 Helix-turn-helix domain of resolvase CH61_604 PF00665 Integrase core domain CH61_605 PF00326 Prolyl oligopeptidase family CH61_607 PF01250 Ribosomal protein S6 CH61_608 PF01084 Ribosomal protein S18 CH61_609 PF03948 Ribosomal protein L9, C-terminal domain CH61_609 PF01281 Ribosomal protein L9, N-terminal domain CH61_61 PF13333 Integrase core domain CH61_61 PF13276 HTH-like domain CH61_61 PF00665 Integrase core domain CH61_610 PF01797 Transposase IS200 like CH61_612 PF08525 Opacity-associated protein A N-terminal motif CH61_612 PF04225 Opacity-associated protein A LysM-like domain CH61_613 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH61_613 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH61_614 PF04405 Domain of Unknown function (DUF542) CH61_614 PF01814 Hemerythrin HHE cation binding domain CH61_615 PF02872 5'-nucleotidase, C-terminal domain CH61_615 PF00149 Calcineurin-like phosphoesterase CH61_616 PF00459 Inositol monophosphatase family CH61_617 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CH61_618 PF06526 Protein of unknown function (DUF1107) CH61_619 PF01595 Cyclin M transmembrane N-terminal domain CH61_619 PF03471 Transporter associated domain CH61_619 PF00571 CBS domain CH61_620 PF01625 Peptide methionine sulfoxide reductase CH61_621 PF01103 Surface antigen CH61_621 PF07244 Surface antigen variable number repeat CH61_621 PF17243 POTRA domain TamA domain 1 CH61_622 PF04357 TamB, inner membrane protein subunit of TAM complex CH61_623 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CH61_624 PF00719 Inorganic pyrophosphatase CH61_625 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CH61_626 PF08245 Mur ligase middle domain CH61_626 PF02875 Mur ligase family, glutamate ligase domain CH61_626 PF01225 Mur ligase family, catalytic domain CH61_628 PF01316 Arginine repressor, DNA binding domain CH61_628 PF02863 Arginine repressor, C-terminal domain CH61_629 PF00056 lactate/malate dehydrogenase, NAD binding domain CH61_629 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CH61_63 PF01757 Acyltransferase family CH61_630 PF13693 Winged helix-turn-helix DNA-binding CH61_632 PF00348 Polyprenyl synthetase CH61_633 PF00829 Ribosomal prokaryotic L21 protein CH61_634 PF01016 Ribosomal L27 protein CH61_635 PF00892 EamA-like transporter family CH61_636 PF01926 50S ribosome-binding GTPase CH61_636 PF01018 GTP1/OBG CH61_637 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_637 PF00672 HAMP domain CH61_637 PF00512 His Kinase A (phospho-acceptor) domain CH61_638 PF00072 Response regulator receiver domain CH61_638 PF00486 Transcriptional regulatory protein, C terminal CH61_639 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CH61_64 PF00419 Fimbrial protein CH61_640 PF01272 Transcription elongation factor, GreA/GreB, C-term CH61_640 PF03449 Transcription elongation factor, N-terminal CH61_641 PF01985 CRS1 / YhbY (CRM) domain CH61_642 PF01728 FtsJ-like methyltransferase CH61_643 PF17862 AAA+ lid domain CH61_643 PF06480 FtsH Extracellular CH61_643 PF01434 Peptidase family M41 CH61_643 PF00004 ATPase family associated with various cellular activities (AAA) CH61_644 PF00809 Pterin binding enzyme CH61_645 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH61_645 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH61_645 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH61_645 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH61_646 PF03840 Preprotein translocase SecG subunit CH61_649 PF17384 RimP C-terminal SH3 domain CH61_649 PF02576 RimP N-terminal domain CH61_65 PF00577 Outer membrane usher protein CH61_65 PF13953 PapC C-terminal domain CH61_65 PF13954 PapC N-terminal domain CH61_650 PF08529 NusA N-terminal domain CH61_650 PF00575 S1 RNA binding domain CH61_650 PF13184 NusA-like KH domain CH61_651 PF04760 Translation initiation factor IF-2, N-terminal region CH61_651 PF00009 Elongation factor Tu GTP binding domain CH61_651 PF03144 Elongation factor Tu domain 2 CH61_651 PF11987 Translation-initiation factor 2 CH61_651 PF08364 Bacterial translation initiation factor IF-2 associated region CH61_652 PF02033 Ribosome-binding factor A CH61_653 PF16198 tRNA pseudouridylate synthase B C-terminal domain CH61_653 PF01509 TruB family pseudouridylate synthase (N terminal domain) CH61_653 PF09157 Pseudouridine synthase II TruB, C-terminal CH61_654 PF00312 Ribosomal protein S15 CH61_656 PF13333 Integrase core domain CH61_656 PF13276 HTH-like domain CH61_656 PF00665 Integrase core domain CH61_657 PF00575 S1 RNA binding domain CH61_657 PF00013 KH domain CH61_657 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CH61_657 PF01138 3' exoribonuclease family, domain 1 CH61_657 PF03725 3' exoribonuclease family, domain 2 CH61_658 PF13181 Tetratricopeptide repeat CH61_658 PF07719 Tetratricopeptide repeat CH61_659 PF00271 Helicase conserved C-terminal domain CH61_659 PF03880 DbpA RNA binding domain CH61_659 PF00270 DEAD/DEAH box helicase CH61_659 PF12343 Cold shock protein DEAD box A CH61_66 PF00577 Outer membrane usher protein CH61_66 PF13954 PapC N-terminal domain CH61_66 PF13953 PapC C-terminal domain CH61_661 PF01381 Helix-turn-helix CH61_662 PF00296 Luciferase-like monooxygenase CH61_664 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH61_664 PF00529 HlyD membrane-fusion protein of T1SS CH61_665 PF00873 AcrB/AcrD/AcrF family CH61_666 PF02321 Outer membrane efflux protein CH61_666 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH61_67 PF02753 Pili assembly chaperone PapD, C-terminal domain CH61_67 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH61_670 PF13508 Acetyltransferase (GNAT) domain CH61_671 PF01541 GIY-YIG catalytic domain CH61_674 PF13416 Bacterial extracellular solute-binding protein CH61_676 PF00528 Binding-protein-dependent transport system inner membrane component CH61_677 PF03459 TOBE domain CH61_677 PF00005 ABC transporter CH61_677 PF17912 MalK OB fold domain CH61_680 PF13460 NAD(P)H-binding CH61_681 PF12706 Beta-lactamase superfamily domain CH61_683 PF07969 Amidohydrolase family CH61_684 PF00005 ABC transporter CH61_685 PF00005 ABC transporter CH61_686 PF06007 Phosphonate metabolism protein PhnJ CH61_687 PF05861 Bacterial phosphonate metabolism protein (PhnI) CH61_688 PF05845 Bacterial phosphonate metabolism protein (PhnH) CH61_689 PF06754 Phosphonate metabolism protein PhnG CH61_69 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH61_69 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH61_690 PF00392 Bacterial regulatory proteins, gntR family CH61_690 PF07702 UTRA domain CH61_693 PF13597 Anaerobic ribonucleoside-triphosphate reductase CH61_693 PF03477 ATP cone domain CH61_694 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH61_694 PF00005 ABC transporter CH61_695 PF00005 ABC transporter CH61_695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH61_696 PF00528 Binding-protein-dependent transport system inner membrane component CH61_696 PF12911 N-terminal TM domain of oligopeptide transport permease C CH61_697 PF00528 Binding-protein-dependent transport system inner membrane component CH61_700 PF04074 YhcH/YjgK/YiaL CH61_701 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH61_701 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH61_702 PF06877 Regulator of ribonuclease activity B CH61_703 PF00583 Acetyltransferase (GNAT) family CH61_704 PF08264 Anticodon-binding domain of tRNA CH61_704 PF10458 Valyl tRNA synthetase tRNA binding arm CH61_704 PF00133 tRNA synthetases class I (I, L, M and V) CH61_705 PF04364 DNA polymerase III chi subunit, HolC CH61_706 PF02789 Cytosol aminopeptidase family, N-terminal domain CH61_706 PF00883 Cytosol aminopeptidase family, catalytic domain CH61_707 PF03739 Lipopolysaccharide export system permease LptF/LptG CH61_708 PF03739 Lipopolysaccharide export system permease LptF/LptG CH61_71 PF13407 Periplasmic binding protein domain CH61_710 PF00589 Phage integrase family CH61_710 PF13356 Arm DNA-binding domain CH61_712 PF08676 MutL C terminal dimerisation domain CH61_712 PF01119 DNA mismatch repair protein, C-terminal domain CH61_713 PF01695 IstB-like ATP binding protein CH61_715 PF00665 Integrase core domain CH61_715 PF02796 Helix-turn-helix domain of resolvase CH61_716 PF01797 Transposase IS200 like CH61_717 PF03884 DNA gyrase inhibitor YacG CH61_718 PF07072 Cell division protein CH61_719 PF01121 Dephospho-CoA kinase CH61_72 PF00005 ABC transporter CH61_720 PF00478 IMP dehydrogenase / GMP reductase domain CH61_721 PF00482 Type II secretion system (T2SS), protein F CH61_722 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CH61_722 PF00437 Type II/IV secretion system protein CH61_723 PF07963 Prokaryotic N-terminal methylation motif CH61_724 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CH61_724 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CH61_725 PF01510 N-acetylmuramoyl-L-alanine amidase CH61_726 PF17113 Regulatory signalling modulator protein AmpE CH61_727 PF00324 Amino acid permease CH61_728 PF07729 FCD domain CH61_728 PF00392 Bacterial regulatory proteins, gntR family CH61_729 PF17831 Pyruvate dehydrogenase E1 component middle domain CH61_729 PF00456 Transketolase, thiamine diphosphate binding domain CH61_73 PF02653 Branched-chain amino acid transport system / permease component CH61_730 PF02817 e3 binding domain CH61_730 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH61_730 PF00364 Biotin-requiring enzyme CH61_731 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH61_731 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH61_732 PF01797 Transposase IS200 like CH61_733 PF11791 Aconitate B N-terminal domain CH61_733 PF06434 Aconitate hydratase 2 N-terminus CH61_733 PF00330 Aconitase family (aconitate hydratase) CH61_734 PF06062 Uncharacterised protein family (UPF0231) CH61_735 PF00892 EamA-like transporter family CH61_736 PF02675 S-adenosylmethionine decarboxylase CH61_737 PF17284 Spermidine synthase tetramerisation domain CH61_738 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) CH61_739 PF07732 Multicopper oxidase CH61_739 PF07731 Multicopper oxidase CH61_739 PF00394 Multicopper oxidase CH61_739 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH61_74 PF12833 Helix-turn-helix domain CH61_740 PF00156 Phosphoribosyl transferase domain CH61_741 PF00484 Carbonic anhydrase CH61_742 PF00005 ABC transporter CH61_743 PF01061 ABC-2 type transporter CH61_744 PF01522 Polysaccharide deacetylase CH61_745 PF02261 Aspartate decarboxylase CH61_746 PF02569 Pantoate-beta-alanine ligase CH61_747 PF02548 Ketopantoate hydroxymethyltransferase CH61_748 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CH61_749 PF12626 Polymerase A arginine-rich C-terminus CH61_749 PF12627 Probable RNA and SrmB- binding site of polymerase A CH61_749 PF01743 Poly A polymerase head domain CH61_750 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH61_751 PF01258 Prokaryotic dksA/traR C4-type zinc finger CH61_752 PF03749 Sugar fermentation stimulation protein RE domain CH61_752 PF17746 SfsA N-terminal OB domain CH61_753 PF02834 LigT like Phosphoesterase CH61_754 PF04408 Helicase associated domain (HA2) CH61_754 PF00271 Helicase conserved C-terminal domain CH61_754 PF00270 DEAD/DEAH box helicase CH61_754 PF08482 ATP-dependent helicase C-terminal CH61_755 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal CH61_755 PF00912 Transglycosylase CH61_755 PF00905 Penicillin binding protein transpeptidase domain CH61_755 PF14814 Bifunctional transglycosylase second domain CH61_756 PF00005 ABC transporter CH61_757 PF01497 Periplasmic binding protein CH61_758 PF01032 FecCD transport family CH61_759 PF00202 Aminotransferase class-III CH61_76 PF00589 Phage integrase family CH61_76 PF14659 Phage integrase, N-terminal SAM-like domain CH61_76 PF13356 Arm DNA-binding domain CH61_760 PF00654 Voltage gated chloride channel CH61_761 PF01521 Iron-sulphur cluster biosynthesis CH61_762 PF03458 UPF0126 domain CH61_763 PF01497 Periplasmic binding protein CH61_764 PF01048 Phosphorylase superfamily CH61_765 PF13286 Phosphohydrolase-associated domain CH61_765 PF01966 HD domain CH61_766 PF00595 PDZ domain CH61_767 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_767 PF01627 Hpt domain CH61_767 PF00512 His Kinase A (phospho-acceptor) domain CH61_767 PF00072 Response regulator receiver domain CH61_767 PF00672 HAMP domain CH61_767 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH61_768 PF02824 TGS domain CH61_768 PF13291 ACT domain CH61_768 PF04607 Region found in RelA / SpoT proteins CH61_769 PF03819 MazG nucleotide pyrophosphohydrolase domain CH61_770 PF00117 Glutamine amidotransferase class-I CH61_770 PF06418 CTP synthase N-terminus CH61_771 PF00113 Enolase, C-terminal TIM barrel domain CH61_771 PF03952 Enolase, N-terminal domain CH61_772 PF00080 Copper/zinc superoxide dismutase (SODC) CH61_773 PF04055 Radical SAM superfamily CH61_774 PF01242 6-pyruvoyl tetrahydropterin synthase CH61_775 PF00258 Flavodoxin CH61_775 PF00175 Oxidoreductase NAD-binding domain CH61_775 PF00667 FAD binding domain CH61_776 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH61_776 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH61_777 PF01507 Phosphoadenosine phosphosulfate reductase family CH61_778 PF01507 Phosphoadenosine phosphosulfate reductase family CH61_78 PF04606 Ogr/Delta-like zinc finger CH61_782 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH61_782 PF10414 Sirohaem synthase dimerisation region CH61_782 PF14824 Sirohaem biosynthesis protein central CH61_783 PF01507 Phosphoadenosine phosphosulfate reductase family CH61_784 PF00009 Elongation factor Tu GTP binding domain CH61_786 PF12084 Protein of unknown function (DUF3561) CH61_787 PF04977 Septum formation initiator CH61_788 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CH61_789 PF02542 YgbB family CH61_79 PF13737 Transposase DDE domain CH61_790 PF01142 tRNA pseudouridine synthase D (TruD) CH61_791 PF01975 Survival protein SurE CH61_793 PF01476 LysM domain CH61_793 PF01551 Peptidase family M23 CH61_794 PF00140 Sigma-70 factor, region 1.2 CH61_794 PF04545 Sigma-70, region 4 CH61_794 PF04539 Sigma-70 region 3 CH61_794 PF04542 Sigma-70 region 2 CH61_795 PF00488 MutS domain V CH61_795 PF05192 MutS domain III CH61_795 PF05188 MutS domain II CH61_795 PF01624 MutS domain I CH61_795 PF05190 MutS family domain IV CH61_796 PF02502 Ribose/Galactose Isomerase CH61_797 PF00107 Zinc-binding dehydrogenase CH61_797 PF08240 Alcohol dehydrogenase GroES-like domain CH61_799 PF02733 Dak1 domain CH61_8 PF11638 DnaA N-terminal domain CH61_8 PF08299 Bacterial dnaA protein helix-turn-helix CH61_8 PF00308 Bacterial dnaA protein CH61_80 PF13737 Transposase DDE domain CH61_800 PF02734 DAK2 domain CH61_801 PF04198 Putative sugar-binding domain CH61_801 PF13936 Helix-turn-helix domain CH61_802 PF02040 Arsenical pump membrane protein CH61_803 PF01022 Bacterial regulatory protein, arsR family CH61_806 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH61_807 PF03150 Di-haem cytochrome c peroxidase CH61_807 PF00034 Cytochrome c CH61_807 PF14376 Haem-binding domain CH61_809 PF00593 TonB dependent receptor CH61_809 PF07715 TonB-dependent Receptor Plug Domain CH61_812 PF00557 Metallopeptidase family M24 CH61_814 PF05683 Fumarase C-terminus CH61_814 PF05681 Fumarate hydratase (Fumerase) CH61_815 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH61_815 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH61_816 PF01261 Xylose isomerase-like TIM barrel CH61_817 PF02653 Branched-chain amino acid transport system / permease component CH61_818 PF02653 Branched-chain amino acid transport system / permease component CH61_819 PF00005 ABC transporter CH61_820 PF01797 Transposase IS200 like CH61_823 PF00455 DeoR C terminal sensor domain CH61_823 PF08220 DeoR-like helix-turn-helix domain CH61_824 PF00596 Class II Aldolase and Adducin N-terminal domain CH61_825 PF01568 Molydopterin dinucleotide binding domain CH61_825 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH61_825 PF00384 Molybdopterin oxidoreductase CH61_826 PF13247 4Fe-4S dicluster domain CH61_826 PF12800 4Fe-4S binding domain CH61_827 PF04976 DMSO reductase anchor subunit (DmsC) CH61_828 PF02613 Nitrate reductase delta subunit CH61_829 PF01292 Prokaryotic cytochrome b561 CH61_83 PF00005 ABC transporter CH61_830 PF07361 Cytochrome b562 CH61_831 PF00141 Peroxidase CH61_834 PF00005 ABC transporter CH61_835 PF02653 Branched-chain amino acid transport system / permease component CH61_836 PF00456 Transketolase, thiamine diphosphate binding domain CH61_837 PF02780 Transketolase, C-terminal domain CH61_837 PF02779 Transketolase, pyrimidine binding domain CH61_838 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH61_838 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH61_841 PF07690 Major Facilitator Superfamily CH61_842 PF02464 Competence-damaged protein CH61_843 PF00154 recA bacterial DNA recombination protein CH61_844 PF02631 RecX family CH61_845 PF01411 tRNA synthetases class II (A) CH61_845 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH61_845 PF02272 DHHA1 domain CH61_846 PF02599 Global regulator protein family CH61_85 PF01032 FecCD transport family CH61_851 PF13419 Haloacid dehalogenase-like hydrolase CH61_852 PF09335 SNARE associated Golgi protein CH61_853 PF04262 Glutamate-cysteine ligase CH61_854 PF02664 S-Ribosylhomocysteinase (LuxS) CH61_855 PF01797 Transposase IS200 like CH61_856 PF01797 Transposase IS200 like CH61_857 PF01595 Cyclin M transmembrane N-terminal domain CH61_857 PF03471 Transporter associated domain CH61_857 PF00571 CBS domain CH61_858 PF01578 Cytochrome C assembly protein CH61_859 PF02881 SRP54-type protein, helical bundle domain CH61_859 PF02978 Signal peptide binding domain CH61_859 PF00448 SRP54-type protein, GTPase domain CH61_86 PF01032 FecCD transport family CH61_860 PF00886 Ribosomal protein S16 CH61_861 PF01782 RimM N-terminal domain CH61_861 PF05239 PRC-barrel domain CH61_862 PF01746 tRNA (Guanine-1)-methyltransferase CH61_863 PF01245 Ribosomal protein L19 CH61_864 PF01797 Transposase IS200 like CH61_865 PF04338 Protein of unknown function, DUF481 CH61_866 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH61_867 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH61_868 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH61_869 PF04397 LytTr DNA-binding domain CH61_869 PF00072 Response regulator receiver domain CH61_87 PF01497 Periplasmic binding protein CH61_870 PF00793 DAHP synthetase I family CH61_871 PF02153 Prephenate dehydrogenase CH61_871 PF01817 Chorismate mutase type II CH61_872 PF00800 Prephenate dehydratase CH61_872 PF01817 Chorismate mutase type II CH61_873 PF01695 IstB-like ATP binding protein CH61_875 PF00665 Integrase core domain CH61_875 PF02796 Helix-turn-helix domain of resolvase CH61_876 PF01817 Chorismate mutase type II CH61_876 PF00800 Prephenate dehydratase CH61_877 PF01797 Transposase IS200 like CH61_878 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH61_879 PF13525 Outer membrane lipoprotein CH61_880 PF01479 S4 domain CH61_880 PF00849 RNA pseudouridylate synthase CH61_882 PF10431 C-terminal, D2-small domain, of ClpB protein CH61_882 PF02861 Clp amino terminal domain, pathogenicity island component CH61_882 PF17871 AAA lid domain CH61_882 PF07724 AAA domain (Cdc48 subfamily) CH61_882 PF00004 ATPase family associated with various cellular activities (AAA) CH61_889 PF10043 Predicted periplasmic lipoprotein (DUF2279) CH61_890 PF13091 PLD-like domain CH61_891 PF00583 Acetyltransferase (GNAT) family CH61_891 PF13380 CoA binding domain CH61_891 PF13607 Succinyl-CoA ligase like flavodoxin domain CH61_893 PF00085 Thioredoxin CH61_894 PF00588 SpoU rRNA Methylase family CH61_894 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH61_895 PF07690 Major Facilitator Superfamily CH61_896 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH61_896 PF00529 HlyD membrane-fusion protein of T1SS CH61_897 PF01047 MarR family CH61_898 PF05437 Branched-chain amino acid transport protein (AzlD) CH61_899 PF03591 AzlC protein CH61_9 PF00712 DNA polymerase III beta subunit, N-terminal domain CH61_9 PF02768 DNA polymerase III beta subunit, C-terminal domain CH61_9 PF02767 DNA polymerase III beta subunit, central domain CH61_90 PF00156 Phosphoribosyl transferase domain CH61_900 PF07690 Major Facilitator Superfamily CH61_902 PF01425 Amidase CH61_905 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH61_906 PF00528 Binding-protein-dependent transport system inner membrane component CH61_908 PF00005 ABC transporter CH61_909 PF00266 Aminotransferase class-V CH61_91 PF00291 Pyridoxal-phosphate dependent enzyme CH61_910 PF01695 IstB-like ATP binding protein CH61_911 PF02796 Helix-turn-helix domain of resolvase CH61_911 PF00665 Integrase core domain CH61_913 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH61_914 PF00528 Binding-protein-dependent transport system inner membrane component CH61_915 PF00571 CBS domain CH61_915 PF00005 ABC transporter CH61_916 PF00268 Ribonucleotide reductase, small chain CH61_917 PF02867 Ribonucleotide reductase, barrel domain CH61_917 PF00317 Ribonucleotide reductase, all-alpha domain CH61_917 PF08343 Ribonucleotide reductase N-terminal CH61_918 PF07972 NrdI Flavodoxin like CH61_92 PF17391 Urocanase N-terminal domain CH61_92 PF17392 Urocanase C-terminal domain CH61_92 PF01175 Urocanase Rossmann-like domain CH61_920 PF06392 Acid shock protein repeat CH61_921 PF09400 Protein of unknown function (DUF2002) CH61_922 PF06711 Protein of unknown function (DUF1198) CH61_924 PF00872 Transposase, Mutator family CH61_926 PF00313 'Cold-shock' DNA-binding domain CH61_927 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH61_928 PF00528 Binding-protein-dependent transport system inner membrane component CH61_929 PF12911 N-terminal TM domain of oligopeptide transport permease C CH61_929 PF00528 Binding-protein-dependent transport system inner membrane component CH61_93 PF00221 Aromatic amino acid lyase CH61_930 PF00005 ABC transporter CH61_931 PF00005 ABC transporter CH61_933 PF00547 Urease, gamma subunit CH61_934 PF00699 Urease beta subunit CH61_935 PF01979 Amidohydrolase family CH61_935 PF00449 Urease alpha-subunit, N-terminal domain CH61_936 PF02814 UreE urease accessory protein, N-terminal domain CH61_936 PF05194 UreE urease accessory protein, C-terminal domain CH61_937 PF01730 UreF CH61_938 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH61_939 PF01774 UreD urease accessory protein CH61_94 PF00324 Amino acid permease CH61_940 PF03253 Urea transporter CH61_941 PF03824 High-affinity nickel-transport protein CH61_942 PF06411 HdeA/HdeB family CH61_943 PF07885 Ion channel CH61_943 PF02254 TrkA-N domain CH61_944 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH61_945 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH61_946 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH61_947 PF02378 Phosphotransferase system, EIIC CH61_948 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH61_949 PF07883 Cupin domain CH61_949 PF12833 Helix-turn-helix domain CH61_95 PF12146 Serine aminopeptidase, S33 CH61_950 PF04794 YdjC-like protein CH61_953 PF03925 SeqA protein C-terminal domain CH61_953 PF17206 SeqA protein N-terminal domain CH61_954 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH61_954 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH61_954 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH61_954 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH61_958 PF00072 Response regulator receiver domain CH61_958 PF00486 Transcriptional regulatory protein, C terminal CH61_959 PF13493 Domain of unknown function (DUF4118) CH61_959 PF00512 His Kinase A (phospho-acceptor) domain CH61_959 PF13492 GAF domain CH61_959 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_959 PF02702 Osmosensitive K+ channel His kinase sensor domain CH61_96 PF08019 Phosphoethanolamine transferase EptA/EptB CH61_96 PF00884 Sulfatase CH61_960 PF02669 K+-transporting ATPase, c chain CH61_962 PF03814 Potassium-transporting ATPase A subunit CH61_963 PF10725 Protein of unknown function (DUF2517) CH61_964 PF08349 Protein of unknown function (DUF1722) CH61_965 PF03441 FAD binding domain of DNA photolyase CH61_965 PF00875 DNA photolyase CH61_966 PF02112 cAMP phosphodiesterases class-II CH61_967 PF01784 NIF3 (NGG1p interacting factor 3) CH61_969 PF02682 Carboxyltransferase domain, subdomain C and D CH61_97 PF00072 Response regulator receiver domain CH61_97 PF00196 Bacterial regulatory proteins, luxR family CH61_970 PF02626 Carboxyltransferase domain, subdomain A and B CH61_971 PF03746 LamB/YcsF family CH61_974 PF01470 Pyroglutamyl peptidase CH61_975 PF03167 Uracil DNA glycosylase superfamily CH61_976 PF01228 Glycine radical CH61_979 PF12796 Ankyrin repeats (3 copies) CH61_98 PF05231 MASE1 CH61_98 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH61_98 PF07730 Histidine kinase CH61_981 PF00270 DEAD/DEAH box helicase CH61_981 PF00271 Helicase conserved C-terminal domain CH61_982 PF05175 Methyltransferase small domain CH61_983 PF00890 FAD binding domain CH61_983 PF02910 Fumarate reductase flavoprotein C-term CH61_984 PF04542 Sigma-70 region 2 CH61_984 PF08281 Sigma-70, region 4 CH61_985 PF03873 Anti sigma-E protein RseA, C-terminal domain CH61_985 PF03872 Anti sigma-E protein RseA, N-terminal domain CH61_986 PF03888 MucB/RseB N-terminal domain CH61_986 PF17188 MucB/RseB C-terminal domain CH61_989 PF00679 Elongation factor G C-terminus CH61_989 PF06421 GTP-binding protein LepA C-terminus CH61_989 PF00009 Elongation factor Tu GTP binding domain CH61_989 PF03144 Elongation factor Tu domain 2 CH61_99 PF00665 Integrase core domain CH61_99 PF02796 Helix-turn-helix domain of resolvase CH61_990 PF10502 Signal peptidase, peptidase S26 CH61_991 PF14622 Ribonuclease-III-like CH61_991 PF00035 Double-stranded RNA binding motif CH61_992 PF01926 50S ribosome-binding GTPase CH61_992 PF07650 KH domain CH61_993 PF11967 Recombination protein O N terminal CH61_993 PF02565 Recombination protein O C terminal CH61_994 PF00665 Integrase core domain CH61_994 PF02796 Helix-turn-helix domain of resolvase CH61_996 PF01695 IstB-like ATP binding protein CH61_999 PF04717 Type VI secretion system, phage-baseplate injector