CH61_101 SM00382 ATPases associated with a variety of cellular activities CH61_1010 SM00382 ATPases associated with a variety of cellular activities CH61_102 SM00387 Histidine kinase-like ATPases CH61_1024 SM00855 Phosphoglycerate mutase family CH61_1025 SM00463 Small MutS-related domain CH61_1033 SM00825 Beta-ketoacyl synthase CH61_1038 SM00342 helix_turn_helix, arabinose operon control protein CH61_1042 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH61_1051 SM00062 Bacterial periplasmic substrate-binding proteins CH61_1054 SM00382 ATPases associated with a variety of cellular activities CH61_1056 SM00052 Putative diguanylate phosphodiesterase CH61_106 SM00912 haemagglutination activity domain CH61_1070 SM00869 Autotransporter beta-domain CH61_1076 SM01217 CH61_1076 CH61_1083 SM00382 ATPases associated with a variety of cellular activities CH61_1086 SM00195 Dual specificity phosphatase, catalytic domain CH61_1086 SM00404 Protein tyrosine phosphatase, catalytic domain motif CH61_1088 SM00563 Phosphate acyltransferases CH61_11 SM00387 Histidine kinase-like ATPases CH61_11 SM00433 TopoisomeraseII CH61_1106 SM00382 ATPases associated with a variety of cellular activities CH61_1111 SM00924 MgtE intracellular N domain CH61_1117 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH61_1118 SM00382 ATPases associated with a variety of cellular activities CH61_112 SM00382 ATPases associated with a variety of cellular activities CH61_1123 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH61_1123 SM00388 His Kinase A (phosphoacceptor) domain CH61_1124 SM00448 cheY-homologous receiver domain CH61_1124 SM00862 Transcriptional regulatory protein, C terminal CH61_1127 SM00046 Diacylglycerol kinase catalytic domain (presumed) CH61_113 SM00382 ATPases associated with a variety of cellular activities CH61_1141 SM01321 CH61_1141 CH61_1143 SM00116 Domain in cystathionine beta-synthase and other proteins. CH61_1143 SM01240 CH61_1143 CH61_1148 SM00564 beta-propeller repeat CH61_115 SM00052 Putative diguanylate phosphodiesterase CH61_115 SM00267 diguanylate cyclase CH61_1152 SM00530 Helix-turn-helix XRE-family like proteins CH61_1153 SM00028 Tetratricopeptide repeats CH61_1155 SM00562 CH61_1155 CH61_1156 SM00247 Beta/gamma crystallins CH61_1157 SM00869 Autotransporter beta-domain CH61_1165 SM00271 DnaJ molecular chaperone homology domain CH61_1172 SM01321 CH61_1172 CH61_1182 SM00938 Nitrogen regulatory protein P-II CH61_1184 SM00382 ATPases associated with a variety of cellular activities CH61_1184 SM00448 cheY-homologous receiver domain CH61_1186 SM00387 Histidine kinase-like ATPases CH61_1186 SM00388 His Kinase A (phosphoacceptor) domain CH61_1190 SM01211 CH61_1190 CH61_1191 SM00062 Bacterial periplasmic substrate-binding proteins CH61_1197 SM01321 CH61_1197 CH61_1200 SM00382 ATPases associated with a variety of cellular activities CH61_1214 SM00382 ATPases associated with a variety of cellular activities CH61_1214 SM01086 C-terminal, D2-small domain, of ClpB protein CH61_1223 SM00421 helix_turn_helix, Lux Regulon CH61_1227 SM00382 ATPases associated with a variety of cellular activities CH61_1231 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH61_124 SM00052 Putative diguanylate phosphodiesterase CH61_1255 SM01321 CH61_1255 CH61_1262 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH61_1262 SM00292 breast cancer carboxy-terminal domain CH61_1262 SM00532 Ligase N family CH61_1263 SM00771 ZipA, C-terminal domain (FtsZ-binding) CH61_1269 SM01321 CH61_1269 CH61_1271 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH61_1271 SM00387 Histidine kinase-like ATPases CH61_1271 SM00388 His Kinase A (phosphoacceptor) domain CH61_1272 SM00448 cheY-homologous receiver domain CH61_1272 SM00862 Transcriptional regulatory protein, C terminal CH61_1274 SM00382 ATPases associated with a variety of cellular activities CH61_1275 SM00450 Rhodanese Homology Domain CH61_128 SM00869 Autotransporter beta-domain CH61_1281 SM00327 von Willebrand factor (vWF) type A domain CH61_1282 SM00387 Histidine kinase-like ATPases CH61_1282 SM00388 His Kinase A (phosphoacceptor) domain CH61_1283 SM00448 cheY-homologous receiver domain CH61_1283 SM00862 Transcriptional regulatory protein, C terminal CH61_1286 SM00382 ATPases associated with a variety of cellular activities CH61_1294 SM00364 Leucine-rich repeats, bacterial type CH61_1296 SM01130 CH61_1296 CH61_1300 SM00869 Autotransporter beta-domain CH61_1306 SM00919 Malic enzyme, NAD binding domain CH61_1306 SM01274 CH61_1306 CH61_1310 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH61_1313 SM00421 helix_turn_helix, Lux Regulon CH61_1313 SM00448 cheY-homologous receiver domain CH61_1320 SM00382 ATPases associated with a variety of cellular activities CH61_1332 SM01321 CH61_1332 CH61_1334 SM01130 CH61_1334 CH61_1346 SM00840 CH61_1346 CH61_1349 SM01001 AIR carboxylase CH61_1352 SM00382 ATPases associated with a variety of cellular activities CH61_1354 SM00822 CH61_1354 CH61_1356 SM00244 prohibitin homologues CH61_1358 SM00422 helix_turn_helix, mercury resistance CH61_139 SM00235 Zinc-dependent metalloprotease CH61_1393 SM00387 Histidine kinase-like ATPases CH61_1394 SM00493 CH61_1394 CH61_1396 SM00382 ATPases associated with a variety of cellular activities CH61_140 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH61_1420 SM00938 Nitrogen regulatory protein P-II CH61_1421 SM00382 ATPases associated with a variety of cellular activities CH61_1422 SM00382 ATPases associated with a variety of cellular activities CH61_1423 SM00344 helix_turn_helix ASNC type CH61_143 SM01321 CH61_143 CH61_1431 SM00411 bacterial (prokaryotic) histone like domain CH61_1432 SM00382 ATPases associated with a variety of cellular activities CH61_1432 SM00464 Found in ATP-dependent protease La (LON) CH61_1433 SM00382 ATPases associated with a variety of cellular activities CH61_1433 SM00994 ClpX C4-type zinc finger CH61_1433 SM01086 C-terminal, D2-small domain, of ClpB protein CH61_1450 SM00981 CH61_1450 CH61_1453 SM00861 Transketolase, pyrimidine binding domain CH61_1454 SM01321 CH61_1454 CH61_146 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH61_146 SM00387 Histidine kinase-like ATPases CH61_146 SM00388 His Kinase A (phosphoacceptor) domain CH61_146 SM00448 cheY-homologous receiver domain CH61_1463 SM01321 CH61_1463 CH61_1466 SM01323 CH61_1466 CH61_147 SM00382 ATPases associated with a variety of cellular activities CH61_1471 SM01321 CH61_1471 CH61_1475 SM00642 Alpha-amylase domain CH61_1479 SM00091 PAS domain CH61_1479 SM00387 Histidine kinase-like ATPases CH61_1479 SM00388 His Kinase A (phosphoacceptor) domain CH61_1480 SM00448 cheY-homologous receiver domain CH61_1480 SM00862 Transcriptional regulatory protein, C terminal CH61_1483 SM00382 ATPases associated with a variety of cellular activities CH61_1495 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH61_1500 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CH61_1510 SM00900 CH61_1510 CH61_1519 SM00710 Parallel beta-helix repeats CH61_1519 SM00912 haemagglutination activity domain CH61_1525 SM00382 ATPases associated with a variety of cellular activities CH61_153 SM00448 cheY-homologous receiver domain CH61_153 SM00862 Transcriptional regulatory protein, C terminal CH61_1535 SM01081 Putative carbohydrate binding domain CH61_1538 SM01321 CH61_1538 CH61_1551 SM00729 Elongator protein 3, MiaB family, Radical SAM CH61_1554 SM00116 Domain in cystathionine beta-synthase and other proteins. CH61_1554 SM01091 Transporter associated domain CH61_1556 SM00062 Bacterial periplasmic substrate-binding proteins CH61_1559 SM00382 ATPases associated with a variety of cellular activities CH61_156 SM00354 helix_turn _helix lactose operon repressor CH61_1570 SM00936 Penicillin-binding protein 5, C-terminal domain CH61_1573 SM00729 Elongator protein 3, MiaB family, Radical SAM CH61_1576 SM00357 Cold shock protein domain CH61_1578 SM00421 helix_turn_helix, Lux Regulon CH61_1583 SM00382 ATPases associated with a variety of cellular activities CH61_1590 SM00382 ATPases associated with a variety of cellular activities CH61_1600 SM01359 CH61_1600 CH61_1600 SM01360 CH61_1600 CH61_1605 SM00354 helix_turn _helix lactose operon repressor CH61_1612 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH61_1619 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH61_1620 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH61_1620 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH61_163 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH61_1633 SM00354 helix_turn _helix lactose operon repressor CH61_1645 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH61_1650 SM00382 ATPases associated with a variety of cellular activities CH61_1652 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH61_1652 SM00091 PAS domain CH61_1652 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH61_1653 SM00382 ATPases associated with a variety of cellular activities CH61_1655 SM00062 Bacterial periplasmic substrate-binding proteins CH61_1655 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH61_1665 SM00829 Enoylreductase CH61_1667 SM00382 ATPases associated with a variety of cellular activities CH61_1669 SM00354 helix_turn _helix lactose operon repressor CH61_1671 SM01329 CH61_1671 CH61_1676 SM00912 haemagglutination activity domain CH61_168 SM00257 Lysin motif CH61_168 SM00634 Bacterial Ig-like domain (group 1) CH61_1684 SM00382 ATPases associated with a variety of cellular activities CH61_1686 SM00354 helix_turn _helix lactose operon repressor CH61_170 SM00642 Alpha-amylase domain CH61_1707 SM00421 helix_turn_helix, Lux Regulon CH61_171 SM00642 Alpha-amylase domain CH61_1710 SM00450 Rhodanese Homology Domain CH61_1712 SM00421 helix_turn_helix, Lux Regulon CH61_1720 SM00382 ATPases associated with a variety of cellular activities CH61_1726 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH61_1731 SM00873 B3/4 domain CH61_1731 SM00874 tRNA synthetase B5 domain CH61_1731 SM00896 Ferredoxin-fold anticodon binding domain CH61_1732 SM00411 bacterial (prokaryotic) histone like domain CH61_1736 SM00382 ATPases associated with a variety of cellular activities CH61_1756 SM00382 ATPases associated with a variety of cellular activities CH61_1761 SM00382 ATPases associated with a variety of cellular activities CH61_1764 SM01321 CH61_1764 CH61_1774 SM00354 helix_turn _helix lactose operon repressor CH61_1780 SM00479 CH61_1780 CH61_1788 SM00347 helix_turn_helix multiple antibiotic resistance protein CH61_1793 SM00363 S4 RNA-binding domain CH61_1797 SM00382 ATPases associated with a variety of cellular activities CH61_1803 SM00382 ATPases associated with a variety of cellular activities CH61_1804 SM00382 ATPases associated with a variety of cellular activities CH61_1808 SM01321 CH61_1808 CH61_1809 SM00382 ATPases associated with a variety of cellular activities CH61_181 SM00382 ATPases associated with a variety of cellular activities CH61_1816 SM00953 CH61_1816 CH61_1818 SM00091 PAS domain CH61_1818 SM00382 ATPases associated with a variety of cellular activities CH61_1819 SM01321 CH61_1819 CH61_1821 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH61_1825 SM00422 helix_turn_helix, mercury resistance CH61_1829 SM00890 Domain of unknown function CH61_1841 SM00382 ATPases associated with a variety of cellular activities CH61_1841 SM00487 DEAD-like helicases superfamily CH61_1841 SM00490 helicase superfamily c-terminal domain CH61_1841 SM00847 Helicase associated domain (HA2) Add an annotation CH61_1843 SM00530 Helix-turn-helix XRE-family like proteins CH61_1844 SM00020 Trypsin-like serine protease CH61_1847 SM00867 YceI-like domain CH61_185 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH61_1850 SM01321 CH61_1850 CH61_1852 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH61_1852 SM00387 Histidine kinase-like ATPases CH61_1852 SM00388 His Kinase A (phosphoacceptor) domain CH61_1853 SM00448 cheY-homologous receiver domain CH61_1853 SM00862 Transcriptional regulatory protein, C terminal CH61_1857 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CH61_1857 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CH61_1860 SM00100 Cyclic nucleotide-monophosphate binding domain CH61_1860 SM00419 helix_turn_helix, cAMP Regulatory protein CH61_1862 SM00098 Alkaline phosphatase homologues CH61_1877 SM00354 helix_turn _helix lactose operon repressor CH61_1888 SM00530 Helix-turn-helix XRE-family like proteins CH61_1904 SM00342 helix_turn_helix, arabinose operon control protein CH61_1906 SM00382 ATPases associated with a variety of cellular activities CH61_191 SM00382 ATPases associated with a variety of cellular activities CH61_1911 SM00382 ATPases associated with a variety of cellular activities CH61_1919 SM00342 helix_turn_helix, arabinose operon control protein CH61_1921 SM00900 CH61_1921 CH61_1923 SM00478 endonuclease III CH61_1923 SM00525 CH61_1923 CH61_1926 SM00357 Cold shock protein domain CH61_1926 SM00955 CH61_1926 CH61_1931 SM01007 Class II Aldolase and Adducin N-terminal domain CH61_1934 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CH61_1936 SM00028 Tetratricopeptide repeats CH61_1938 SM00014 Acid phosphatase homologues CH61_1943 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH61_1943 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH61_1943 SM00493 CH61_1943 CH61_1947 SM00822 CH61_1947 CH61_1949 SM00363 S4 RNA-binding domain CH61_1951 SM00481 DNA polymerase alpha chain like domain CH61_1958 SM00749 bacterial OsmY and nodulation domain CH61_1971 SM00155 Phospholipase D. Active site motifs. CH61_1974 SM00382 ATPases associated with a variety of cellular activities CH61_1975 SM00382 ATPases associated with a variety of cellular activities CH61_1982 SM00382 ATPases associated with a variety of cellular activities CH61_1984 SM00528 Domain in histone-like proteins of HNS family CH61_1985 SM00984 UDP binding domain CH61_1986 SM00448 cheY-homologous receiver domain CH61_1997 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH61_1997 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH61_1997 SM00493 CH61_1997 CH61_2001 SM00870 CH61_2001 CH61_2005 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH61_2008 SM00763 PrkA AAA domain CH61_2016 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH61_2027 SM00060 Fibronectin type 3 domain CH61_2033 SM01040 BRO family, N-terminal domain CH61_2037 SM00232 JAB/MPN domain CH61_2039 SM01321 CH61_2039 CH61_2044 SM00635 Bacterial Ig-like domain 2 CH61_2050 SM00635 Bacterial Ig-like domain 2 CH61_2068 SM01040 BRO family, N-terminal domain CH61_2085 SM00341 Helicase and RNase D C-terminal CH61_2085 SM00474 3'-5' exonuclease CH61_2089 SM00487 DEAD-like helicases superfamily CH61_2089 SM00491 CH61_2089 CH61_2099 SM00257 Lysin motif CH61_2101 SM00382 ATPases associated with a variety of cellular activities CH61_2103 SM00382 ATPases associated with a variety of cellular activities CH61_2104 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH61_211 SM00382 ATPases associated with a variety of cellular activities CH61_2115 SM00836 DALR anticodon binding domain CH61_2115 SM01016 Arginyl tRNA synthetase N terminal dom CH61_2116 SM00912 haemagglutination activity domain CH61_2124 SM00481 DNA polymerase alpha chain like domain CH61_2129 SM01321 CH61_2129 CH61_2138 SM00382 ATPases associated with a variety of cellular activities CH61_2140 SM01321 CH61_2140 CH61_2145 SM00937 CH61_2145 CH61_2149 SM01400 CH61_2149 CH61_2155 SM00450 Rhodanese Homology Domain CH61_216 SM00382 ATPases associated with a variety of cellular activities CH61_2162 SM00448 cheY-homologous receiver domain CH61_2162 SM00862 Transcriptional regulatory protein, C terminal CH61_2163 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH61_2163 SM00387 Histidine kinase-like ATPases CH61_2163 SM00388 His Kinase A (phosphoacceptor) domain CH61_2174 SM00671 Sel1-like repeats. CH61_2176 SM00671 Sel1-like repeats. CH61_2192 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH61_2192 SM00866 CH61_2192 CH61_2196 SM00382 ATPases associated with a variety of cellular activities CH61_2208 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH61_2208 SM00387 Histidine kinase-like ATPases CH61_2221 SM00382 ATPases associated with a variety of cellular activities CH61_2229 SM00420 helix_turn_helix, Deoxyribose operon repressor CH61_2229 SM01134 CH61_2229 CH61_2243 SM00421 helix_turn_helix, Lux Regulon CH61_2243 SM00448 cheY-homologous receiver domain CH61_2255 SM00382 ATPases associated with a variety of cellular activities CH61_2256 SM00382 ATPases associated with a variety of cellular activities CH61_2257 SM00342 helix_turn_helix, arabinose operon control protein CH61_2259 SM00823 Phosphopantetheine attachment site CH61_2260 SM00822 CH61_2260 CH61_2260 SM00823 Phosphopantetheine attachment site CH61_2260 SM00824 Thioesterase CH61_2260 SM00825 Beta-ketoacyl synthase CH61_2260 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH61_2272 SM00382 ATPases associated with a variety of cellular activities CH61_2276 SM00382 ATPases associated with a variety of cellular activities CH61_2281 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH61_2281 SM00866 CH61_2281 CH61_2310 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH61_2310 SM00465 GIY-YIG type nucleases (URI domain) CH61_2311 SM00421 helix_turn_helix, Lux Regulon CH61_2311 SM00448 cheY-homologous receiver domain CH61_232 SM00507 HNH nucleases CH61_2328 SM00382 ATPases associated with a variety of cellular activities CH61_2330 SM00062 Bacterial periplasmic substrate-binding proteins CH61_2330 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH61_2338 SM00342 helix_turn_helix, arabinose operon control protein CH61_2341 SM00478 endonuclease III CH61_2348 SM00382 ATPases associated with a variety of cellular activities CH61_2362 SM00382 ATPases associated with a variety of cellular activities CH61_2365 SM01007 Class II Aldolase and Adducin N-terminal domain CH61_2369 SM00047 Lysozyme subfamily 2 CH61_2378 SM00858 CH61_2378 CH61_2381 SM00634 Bacterial Ig-like domain (group 1) CH61_2382 SM01321 CH61_2382 CH61_2397 SM01022 CH61_2397 CH61_2399 SM00487 DEAD-like helicases superfamily CH61_2399 SM00490 helicase superfamily c-terminal domain CH61_2405 SM00903 Flavin reductase like domain CH61_2415 SM00347 helix_turn_helix multiple antibiotic resistance protein CH61_2416 SM01091 Transporter associated domain CH61_2423 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH61_2423 SM00091 PAS domain CH61_2423 SM00267 diguanylate cyclase CH61_2427 SM00357 Cold shock protein domain CH61_2437 SM00342 helix_turn_helix, arabinose operon control protein CH61_2439 SM00382 ATPases associated with a variety of cellular activities CH61_2440 SM00090 RIO-like kinase CH61_2445 SM00382 ATPases associated with a variety of cellular activities CH61_2448 SM00354 helix_turn _helix lactose operon repressor CH61_245 SM00487 DEAD-like helicases superfamily CH61_245 SM00490 helicase superfamily c-terminal domain CH61_2456 SM00382 ATPases associated with a variety of cellular activities CH61_2461 SM00644 CH61_2461 CH61_2462 SM00346 helix_turn_helix isocitrate lyase regulation CH61_247 SM00357 Cold shock protein domain CH61_247 SM00382 ATPases associated with a variety of cellular activities CH61_247 SM00959 Rho termination factor, N-terminal domain CH61_2472 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH61_2472 SM00245 tail specific protease CH61_2473 SM00945 ProQ/FINO family CH61_2477 SM00972 Spore Coat Protein U domain CH61_2478 SM00972 Spore Coat Protein U domain CH61_2479 SM00972 Spore Coat Protein U domain CH61_2482 SM00972 Spore Coat Protein U domain CH61_2484 SM01022 CH61_2484 CH61_2486 SM00382 ATPases associated with a variety of cellular activities CH61_2492 SM01005 Alanine racemase, C-terminal domain CH61_2497 SM00644 CH61_2497 CH61_2499 SM00448 cheY-homologous receiver domain CH61_2500 SM00448 cheY-homologous receiver domain CH61_2501 SM00138 Methyltransferase, chemotaxis proteins CH61_2504 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH61_2504 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH61_2504 SM00319 Homologues of the ligand binding domain of Tar CH61_2507 SM00869 Autotransporter beta-domain CH61_251 SM00984 UDP binding domain CH61_2512 SM00260 Two component signalling adaptor domain CH61_2513 SM00073 Histidine Phosphotransfer domain CH61_2513 SM00260 Two component signalling adaptor domain CH61_2513 SM00387 Histidine kinase-like ATPases CH61_2513 SM01231 CH61_2513 CH61_2518 SM00831 Cation transporter/ATPase, N-terminus CH61_2520 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH61_2520 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH61_2520 SM00319 Homologues of the ligand binding domain of Tar CH61_2523 SM00357 Cold shock protein domain CH61_2524 SM01038 Beta galactosidase small chain CH61_2525 SM00829 Enoylreductase CH61_2527 SM00344 helix_turn_helix ASNC type CH61_2534 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH61_2534 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH61_2536 SM00354 helix_turn _helix lactose operon repressor CH61_2537 SM01329 CH61_2537 CH61_2544 SM00448 cheY-homologous receiver domain CH61_2544 SM00862 Transcriptional regulatory protein, C terminal CH61_2545 SM00387 Histidine kinase-like ATPases CH61_2545 SM00388 His Kinase A (phosphoacceptor) domain CH61_2546 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CH61_2551 SM00382 ATPases associated with a variety of cellular activities CH61_2553 SM00487 DEAD-like helicases superfamily CH61_2553 SM00490 helicase superfamily c-terminal domain CH61_2553 SM00982 CH61_2553 CH61_2553 SM01058 CarD-like/TRCF domain CH61_2556 SM00382 ATPases associated with a variety of cellular activities CH61_2568 SM01321 CH61_2568 CH61_2577 SM00825 Beta-ketoacyl synthase CH61_2579 SM00822 CH61_2579 CH61_2580 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH61_2586 SM01321 CH61_2586 CH61_2587 SM00363 S4 RNA-binding domain CH61_2588 SM00316 Ribosomal protein S1-like RNA-binding domain CH61_26 SM00642 Alpha-amylase domain CH61_2604 SM00421 helix_turn_helix, Lux Regulon CH61_2604 SM00448 cheY-homologous receiver domain CH61_2614 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH61_2620 SM00634 Bacterial Ig-like domain (group 1) CH61_2627 SM00382 ATPases associated with a variety of cellular activities CH61_2628 SM00382 ATPases associated with a variety of cellular activities CH61_2640 SM01350 CH61_2640 CH61_2648 SM00382 ATPases associated with a variety of cellular activities CH61_2650 SM01006 Siderophore biosynthesis protein domain CH61_2654 SM01091 Transporter associated domain CH61_2660 SM01321 CH61_2660 CH61_2662 SM00382 ATPases associated with a variety of cellular activities CH61_2671 SM00919 Malic enzyme, NAD binding domain CH61_2671 SM01274 CH61_2671 CH61_2674 SM00382 ATPases associated with a variety of cellular activities CH61_2680 SM00829 Enoylreductase CH61_2685 SM00382 ATPases associated with a variety of cellular activities CH61_2687 SM00852 Probable molybdopterin binding domain CH61_2691 SM00382 ATPases associated with a variety of cellular activities CH61_2710 SM00382 ATPases associated with a variety of cellular activities CH61_2710 SM01086 C-terminal, D2-small domain, of ClpB protein CH61_2718 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH61_272 SM01219 CH61_272 CH61_2726 SM00825 Beta-ketoacyl synthase CH61_2738 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH61_2739 SM00992 Hemimethylated DNA-binding protein YccV like CH61_2740 SM00881 CoA binding domain CH61_2742 SM00851 MGS-like domain CH61_2749 SM01321 CH61_2749 CH61_2758 SM00382 ATPases associated with a variety of cellular activities CH61_2759 SM00825 Beta-ketoacyl synthase CH61_2760 SM01321 CH61_2760 CH61_2764 SM00382 ATPases associated with a variety of cellular activities CH61_2765 SM00981 CH61_2765 CH61_2773 SM01321 CH61_2773 CH61_2775 SM00849 Metallo-beta-lactamase superfamily CH61_2778 SM01321 CH61_2778 CH61_2786 SM00357 Cold shock protein domain CH61_2787 SM01150 CH61_2787 CH61_2789 SM00382 ATPases associated with a variety of cellular activities CH61_2790 SM00849 Metallo-beta-lactamase superfamily CH61_2791 SM00411 bacterial (prokaryotic) histone like domain CH61_2793 SM00316 Ribosomal protein S1-like RNA-binding domain CH61_2799 SM00870 CH61_2799 CH61_2807 SM00382 ATPases associated with a variety of cellular activities CH61_2810 SM00843 CH61_2810 CH61_2811 SM00344 helix_turn_helix ASNC type CH61_2813 SM00382 ATPases associated with a variety of cellular activities CH61_2814 SM00382 ATPases associated with a variety of cellular activities CH61_2816 SM00316 Ribosomal protein S1-like RNA-binding domain CH61_2817 SM01321 CH61_2817 CH61_2818 SM00382 ATPases associated with a variety of cellular activities CH61_2818 SM01086 C-terminal, D2-small domain, of ClpB protein CH61_2820 SM00357 Cold shock protein domain CH61_2821 SM00382 ATPases associated with a variety of cellular activities CH61_2833 SM00830 Chorismate mutase type II CH61_2834 SM00382 ATPases associated with a variety of cellular activities CH61_2835 SM00062 Bacterial periplasmic substrate-binding proteins CH61_2835 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH61_2841 SM00382 ATPases associated with a variety of cellular activities CH61_2845 SM00244 prohibitin homologues CH61_2847 SM00062 Bacterial periplasmic substrate-binding proteins CH61_2848 SM00382 ATPases associated with a variety of cellular activities CH61_2855 SM00382 ATPases associated with a variety of cellular activities CH61_286 SM00341 Helicase and RNase D C-terminal CH61_286 SM00487 DEAD-like helicases superfamily CH61_286 SM00490 helicase superfamily c-terminal domain CH61_286 SM00956 CH61_286 CH61_2862 SM00014 Acid phosphatase homologues CH61_2863 SM01133 CH61_2863 CH61_2864 SM00420 helix_turn_helix, Deoxyribose operon repressor CH61_2864 SM01134 CH61_2864 CH61_2866 SM00936 Penicillin-binding protein 5, C-terminal domain CH61_2868 SM00382 ATPases associated with a variety of cellular activities CH61_2868 SM00930 CH61_2868 CH61_2874 SM00382 ATPases associated with a variety of cellular activities CH61_2881 SM00518 AP endonuclease family 2 CH61_2886 SM00862 Transcriptional regulatory protein, C terminal CH61_2892 SM00382 ATPases associated with a variety of cellular activities CH61_2902 SM00841 Elongation factor P, C-terminal CH61_2902 SM01185 CH61_2902 CH61_2905 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH61_2905 SM00895 CH61_2905 CH61_2907 SM00833 Cobalamin synthesis protein cobW C-terminal domain CH61_2908 SM00014 Acid phosphatase homologues CH61_2911 SM00052 Putative diguanylate phosphodiesterase CH61_2915 SM00382 ATPases associated with a variety of cellular activities CH61_2918 SM00363 S4 RNA-binding domain CH61_2919 SM00487 DEAD-like helicases superfamily CH61_2919 SM00490 helicase superfamily c-terminal domain CH61_2921 SM01321 CH61_2921 CH61_2950 SM00420 helix_turn_helix, Deoxyribose operon repressor CH61_2950 SM01134 CH61_2950 CH61_2951 SM01007 Class II Aldolase and Adducin N-terminal domain CH61_2954 SM00530 Helix-turn-helix XRE-family like proteins CH61_2958 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH61_2958 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH61_2964 SM01321 CH61_2964 CH61_2970 SM00421 helix_turn_helix, Lux Regulon CH61_2970 SM00448 cheY-homologous receiver domain CH61_2971 SM00387 Histidine kinase-like ATPases CH61_2971 SM00388 His Kinase A (phosphoacceptor) domain CH61_2971 SM00448 cheY-homologous receiver domain CH61_2972 SM00434 DNA Topoisomerase IV CH61_2978 SM00852 Probable molybdopterin binding domain CH61_2981 SM01060 CH61_2981 CH61_2982 SM00487 DEAD-like helicases superfamily CH61_2982 SM00488 CH61_2982 CH61_2982 SM00491 CH61_2982 CH61_2989 SM00382 ATPases associated with a variety of cellular activities CH61_2993 SM00450 Rhodanese Homology Domain CH61_2996 SM00382 ATPases associated with a variety of cellular activities CH61_3005 SM00382 ATPases associated with a variety of cellular activities CH61_3008 SM00507 HNH nucleases CH61_3009 SM01118 CH61_3009 CH61_3015 SM01321 CH61_3015 CH61_3024 SM01321 CH61_3024 CH61_3029 SM00729 Elongator protein 3, MiaB family, Radical SAM CH61_3033 SM00487 DEAD-like helicases superfamily CH61_3033 SM00490 helicase superfamily c-terminal domain CH61_3034 SM00382 ATPases associated with a variety of cellular activities CH61_3038 SM00729 Elongator protein 3, MiaB family, Radical SAM CH61_3038 SM00876 Biotin and Thiamin Synthesis associated domain CH61_3042 SM00382 ATPases associated with a variety of cellular activities CH61_3047 SM00382 ATPases associated with a variety of cellular activities CH61_305 SM00382 ATPases associated with a variety of cellular activities CH61_305 SM00962 SRP54-type protein, GTPase domain CH61_305 SM00963 SRP54-type protein, helical bundle domain CH61_3056 SM00855 Phosphoglycerate mutase family CH61_3058 SM00382 ATPases associated with a variety of cellular activities CH61_306 SM00382 ATPases associated with a variety of cellular activities CH61_3078 SM00881 CoA binding domain CH61_3081 SM00861 Transketolase, pyrimidine binding domain CH61_309 SM01321 CH61_309 CH61_3094 SM01321 CH61_3094 CH61_3101 SM00778 Zinc-binding domain of primase-helicase CH61_3108 SM00382 ATPases associated with a variety of cellular activities CH61_3113 SM00479 CH61_3113 CH61_3116 SM00849 Metallo-beta-lactamase superfamily CH61_3117 SM00257 Lysin motif CH61_3127 SM00382 ATPases associated with a variety of cellular activities CH61_3127 SM00930 CH61_3127 CH61_3135 SM01322 CH61_3135 CH61_3139 SM00977 TilS substrate C-terminal domain CH61_314 SM00382 ATPases associated with a variety of cellular activities CH61_3142 SM00481 DNA polymerase alpha chain like domain CH61_3148 SM00935 Outer membrane protein (OmpH-like) CH61_315 SM00382 ATPases associated with a variety of cellular activities CH61_3150 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH61_3159 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH61_3165 SM01321 CH61_3165 CH61_3169 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH61_3169 SM00475 5'-3' exonuclease CH61_3177 SM00925 MltA specific insert domain CH61_3180 SM00646 CH61_3180 CH61_3189 SM00382 ATPases associated with a variety of cellular activities CH61_3192 SM00823 Phosphopantetheine attachment site CH61_3192 SM00825 Beta-ketoacyl synthase CH61_3196 SM00364 Leucine-rich repeats, bacterial type CH61_3196 SM00369 Leucine-rich repeats, typical (most populated) subfamily CH61_3197 SM00364 Leucine-rich repeats, bacterial type CH61_3198 SM00364 Leucine-rich repeats, bacterial type CH61_3199 SM00869 Autotransporter beta-domain CH61_3205 SM00052 Putative diguanylate phosphodiesterase CH61_3205 SM00091 PAS domain CH61_3205 SM00267 diguanylate cyclase CH61_3212 SM01006 Siderophore biosynthesis protein domain CH61_3219 SM00421 helix_turn_helix, Lux Regulon CH61_3232 SM00382 ATPases associated with a variety of cellular activities CH61_3232 SM01086 C-terminal, D2-small domain, of ClpB protein CH61_3246 SM00382 ATPases associated with a variety of cellular activities CH61_3252 SM00478 endonuclease III CH61_3252 SM00525 CH61_3252 CH61_3259 SM00729 Elongator protein 3, MiaB family, Radical SAM CH61_326 SM00382 ATPases associated with a variety of cellular activities CH61_3261 SM01152 CH61_3261 CH61_3265 SM00382 ATPases associated with a variety of cellular activities CH61_3268 SM00732 Likely ribonuclease with RNase H fold. CH61_3273 SM00731 SprT homologues. CH61_3279 SM00861 Transketolase, pyrimidine binding domain CH61_3280 SM01321 CH61_3280 CH61_3283 SM00382 ATPases associated with a variety of cellular activities CH61_3284 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH61_3296 SM01011 Aminopeptidase P, N-terminal domain CH61_3310 SM00448 cheY-homologous receiver domain CH61_3310 SM00862 Transcriptional regulatory protein, C terminal CH61_3311 SM00387 Histidine kinase-like ATPases CH61_3311 SM00388 His Kinase A (phosphoacceptor) domain CH61_3317 SM00937 CH61_3317 CH61_3323 SM00530 Helix-turn-helix XRE-family like proteins CH61_3325 SM00530 Helix-turn-helix XRE-family like proteins CH61_3326 SM00778 Zinc-binding domain of primase-helicase CH61_3326 SM00885 D5 N terminal like CH61_3347 SM00382 ATPases associated with a variety of cellular activities CH61_3348 SM00382 ATPases associated with a variety of cellular activities CH61_3356 SM00354 helix_turn _helix lactose operon repressor CH61_3359 SM00354 helix_turn _helix lactose operon repressor CH61_3375 SM00420 helix_turn_helix, Deoxyribose operon repressor CH61_3375 SM01134 CH61_3375 CH61_3380 SM00382 ATPases associated with a variety of cellular activities CH61_3382 SM00869 Autotransporter beta-domain CH61_3385 SM00947 Carbonic anhydrase CH61_3389 SM00382 ATPases associated with a variety of cellular activities CH61_3401 SM00862 Transcriptional regulatory protein, C terminal CH61_3404 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH61_3404 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH61_3404 SM00319 Homologues of the ligand binding domain of Tar CH61_3405 SM00849 Metallo-beta-lactamase superfamily CH61_3409 SM00354 helix_turn _helix lactose operon repressor CH61_3412 SM00563 Phosphate acyltransferases CH61_3417 SM00927 DNA mismatch repair enzyme MutH CH61_3419 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH61_3425 SM00382 ATPases associated with a variety of cellular activities CH61_3433 SM00382 ATPases associated with a variety of cellular activities CH61_3434 SM00382 ATPases associated with a variety of cellular activities CH61_3440 SM00869 Autotransporter beta-domain CH61_3447 SM00354 helix_turn _helix lactose operon repressor CH61_346 SM00382 ATPases associated with a variety of cellular activities CH61_3467 SM00862 Transcriptional regulatory protein, C terminal CH61_3477 SM01321 CH61_3477 CH61_348 SM01004 Delta-aminolevulinic acid dehydratase CH61_3483 SM00858 CH61_3483 CH61_3487 SM00382 ATPases associated with a variety of cellular activities CH61_349 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH61_349 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH61_3492 SM00382 ATPases associated with a variety of cellular activities CH61_3507 SM01321 CH61_3507 CH61_3508 SM01321 CH61_3508 CH61_3527 SM00342 helix_turn_helix, arabinose operon control protein CH61_3533 SM00563 Phosphate acyltransferases CH61_3534 SM00434 DNA Topoisomerase IV CH61_3537 SM00387 Histidine kinase-like ATPases CH61_3537 SM00433 TopoisomeraseII CH61_3553 SM01118 CH61_3553 CH61_3554 SM00287 Bacterial SH3 domain homologues CH61_3555 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH61_3557 SM00905 Dihydroneopterin aldolase CH61_3558 SM01207 CH61_3558 CH61_356 SM01321 CH61_356 CH61_3561 SM00400 zinc finger CH61_3561 SM00493 CH61_3561 CH61_3561 SM00766 DNA primase DnaG DnaB-binding CH61_3569 SM00382 ATPases associated with a variety of cellular activities CH61_3589 SM01217 CH61_3589 CH61_3594 SM00354 helix_turn _helix lactose operon repressor CH61_3596 SM00382 ATPases associated with a variety of cellular activities CH61_3599 SM00869 Autotransporter beta-domain CH61_3604 SM00912 haemagglutination activity domain CH61_3606 SM00327 von Willebrand factor (vWF) type A domain CH61_3608 SM00327 von Willebrand factor (vWF) type A domain CH61_3609 SM00327 von Willebrand factor (vWF) type A domain CH61_3611 SM00220 Serine/Threonine protein kinases, catalytic domain CH61_3615 SM00869 Autotransporter beta-domain CH61_3620 SM01321 CH61_3620 CH61_3622 SM00858 CH61_3622 CH61_3626 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH61_3626 SM00895 CH61_3626 CH61_3637 SM00382 ATPases associated with a variety of cellular activities CH61_3639 SM00957 SecA DEAD-like domain CH61_3639 SM00958 SecA preprotein cross-linking domain CH61_3643 SM00864 Tubulin/FtsZ family, GTPase domain CH61_3643 SM00865 Tubulin/FtsZ family, C-terminal domain CH61_3644 SM00842 Cell division protein FtsA CH61_3659 SM00354 helix_turn _helix lactose operon repressor CH61_3667 SM01321 CH61_3667 CH61_3668 SM00917 LeuA allosteric (dimerisation) domain CH61_3669 SM01329 CH61_3669 CH61_3681 SM00382 ATPases associated with a variety of cellular activities CH61_3683 SM00486 DNA polymerase type-B family CH61_3684 SM00487 DEAD-like helicases superfamily CH61_3684 SM00490 helicase superfamily c-terminal domain CH61_3696 SM00382 ATPases associated with a variety of cellular activities CH61_3696 SM01086 C-terminal, D2-small domain, of ClpB protein CH61_3706 SM00271 DnaJ molecular chaperone homology domain CH61_3710 SM00650 Ribosomal RNA adenine dimethylases CH61_3714 SM01321 CH61_3714 CH61_3719 SM00851 MGS-like domain CH61_3719 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH61_3720 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CH61_3722 SM01321 CH61_3722 CH61_3723 SM01321 CH61_3723 CH61_3728 SM00904 Riboflavin kinase CH61_3732 SM00271 DnaJ molecular chaperone homology domain CH61_3737 SM00852 Probable molybdopterin binding domain CH61_3746 SM00448 cheY-homologous receiver domain CH61_3746 SM00862 Transcriptional regulatory protein, C terminal CH61_3749 SM00855 Phosphoglycerate mutase family CH61_3750 SM00342 helix_turn_helix, arabinose operon control protein CH61_3750 SM00871 Bacterial transcription activator, effector binding domain CH61_3754 SM00831 Cation transporter/ATPase, N-terminus CH61_3756 SM00267 diguanylate cyclase CH61_3759 SM00382 ATPases associated with a variety of cellular activities CH61_3761 SM00530 Helix-turn-helix XRE-family like proteins CH61_3762 SM00382 ATPases associated with a variety of cellular activities CH61_3767 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CH61_3769 SM01133 CH61_3769 CH61_3774 SM00749 bacterial OsmY and nodulation domain CH61_378 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH61_378 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH61_3781 SM00267 diguanylate cyclase CH61_379 SM00649 Ribosomal protein L11/L12 CH61_3792 SM00382 ATPases associated with a variety of cellular activities CH61_3796 SM01133 CH61_3796 CH61_3802 SM00342 helix_turn_helix, arabinose operon control protein CH61_3817 SM00382 ATPases associated with a variety of cellular activities CH61_3820 SM00382 ATPases associated with a variety of cellular activities CH61_3824 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH61_3825 SM00316 Ribosomal protein S1-like RNA-binding domain CH61_3825 SM00357 Cold shock protein domain CH61_3825 SM00955 CH61_3825 CH61_3827 SM00788 Adenylosuccinate synthetase CH61_3829 SM00244 prohibitin homologues CH61_3830 SM00244 prohibitin homologues CH61_3834 SM00853 MutL C terminal dimerisation domain CH61_3834 SM01340 CH61_3834 CH61_3835 SM00257 Lysin motif CH61_3835 SM00646 CH61_3835 CH61_384 SM00663 RNA polymerase I subunit A N-terminus CH61_3841 SM00479 CH61_3841 CH61_385 SM00876 Biotin and Thiamin Synthesis associated domain CH61_3850 SM01321 CH61_3850 CH61_3852 SM00841 Elongation factor P, C-terminal CH61_3852 SM01185 CH61_3852 CH61_3856 SM00883 Chaperonin 10 Kd subunit CH61_3862 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH61_3867 SM01276 CH61_3867 CH61_3872 SM00342 helix_turn_helix, arabinose operon control protein CH61_3873 SM00342 helix_turn_helix, arabinose operon control protein CH61_3878 SM01007 Class II Aldolase and Adducin N-terminal domain CH61_3885 SM01005 Alanine racemase, C-terminal domain CH61_3886 SM00382 ATPases associated with a variety of cellular activities CH61_3887 SM00829 Enoylreductase CH61_3893 SM00563 Phosphate acyltransferases CH61_3896 SM00869 Autotransporter beta-domain CH61_3897 SM00060 Fibronectin type 3 domain CH61_3916 SM00729 Elongator protein 3, MiaB family, Radical SAM CH61_3923 SM00382 ATPases associated with a variety of cellular activities CH61_3936 SM00382 ATPases associated with a variety of cellular activities CH61_3944 SM00342 helix_turn_helix, arabinose operon control protein CH61_3948 SM00387 Histidine kinase-like ATPases CH61_3948 SM00388 His Kinase A (phosphoacceptor) domain CH61_3948 SM00448 cheY-homologous receiver domain CH61_3949 SM00421 helix_turn_helix, Lux Regulon CH61_3949 SM00448 cheY-homologous receiver domain CH61_3956 SM00382 ATPases associated with a variety of cellular activities CH61_3969 SM00422 helix_turn_helix, mercury resistance CH61_397 SM00411 bacterial (prokaryotic) histone like domain CH61_3971 SM00662 RNA polymerases D CH61_3972 SM00363 S4 RNA-binding domain CH61_3972 SM01390 CH61_3972 CH61_3985 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH61_3986 SM01374 CH61_3986 CH61_399 SM01209 CH61_399 CH61_399 SM01210 CH61_399 CH61_3990 SM00322 K homology RNA-binding domain CH61_3993 SM01382 CH61_3993 CH61_3993 SM01383 CH61_3993 CH61_3997 SM01403 CH61_3997 CH61_4 SM01234 CH61_4 CH61_400 SM00798 AICARFT/IMPCHase bienzyme CH61_400 SM00851 MGS-like domain CH61_4000 SM01321 CH61_4000 CH61_4002 SM00838 Elongation factor G C-terminus CH61_4002 SM00889 Elongation factor G, domain IV CH61_4016 SM00382 ATPases associated with a variety of cellular activities CH61_4021 SM00382 ATPases associated with a variety of cellular activities CH61_4022 SM00062 Bacterial periplasmic substrate-binding proteins CH61_4029 SM00100 Cyclic nucleotide-monophosphate binding domain CH61_4029 SM00419 helix_turn_helix, cAMP Regulatory protein CH61_4037 SM00354 helix_turn _helix lactose operon repressor CH61_4062 SM00363 S4 RNA-binding domain CH61_4065 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH61_4065 SM00387 Histidine kinase-like ATPases CH61_4065 SM00388 His Kinase A (phosphoacceptor) domain CH61_4066 SM00448 cheY-homologous receiver domain CH61_4066 SM00862 Transcriptional regulatory protein, C terminal CH61_4068 SM00316 Ribosomal protein S1-like RNA-binding domain CH61_4068 SM00732 Likely ribonuclease with RNase H fold. CH61_4069 SM00899 CH61_4069 CH61_4079 SM00421 helix_turn_helix, Lux Regulon CH61_4080 SM00450 Rhodanese Homology Domain CH61_4082 SM00420 helix_turn_helix, Deoxyribose operon repressor CH61_4082 SM01134 CH61_4082 CH61_4092 SM00487 DEAD-like helicases superfamily CH61_4092 SM00490 helicase superfamily c-terminal domain CH61_4094 SM00354 helix_turn _helix lactose operon repressor CH61_4097 SM00382 ATPases associated with a variety of cellular activities CH61_4097 SM01086 C-terminal, D2-small domain, of ClpB protein CH61_4105 SM00382 ATPases associated with a variety of cellular activities CH61_4106 SM00382 ATPases associated with a variety of cellular activities CH61_4107 SM01321 CH61_4107 CH61_4127 SM00448 cheY-homologous receiver domain CH61_4127 SM00862 Transcriptional regulatory protein, C terminal CH61_4128 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH61_4128 SM00387 Histidine kinase-like ATPases CH61_4128 SM00388 His Kinase A (phosphoacceptor) domain CH61_4129 SM00342 helix_turn_helix, arabinose operon control protein CH61_4131 SM00971 Serine acetyltransferase, N-terminal CH61_4135 SM00450 Rhodanese Homology Domain CH61_4140 SM00829 Enoylreductase CH61_4148 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CH61_4148 SM01232 CH61_4148 CH61_4159 SM00532 Ligase N family CH61_416 SM00346 helix_turn_helix isocitrate lyase regulation CH61_4160 SM00072 Guanylate kinase homologues. CH61_4161 SM01409 CH61_4161 CH61_4162 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH61_4162 SM00954 Region found in RelA / SpoT proteins CH61_4164 SM00487 DEAD-like helicases superfamily CH61_4164 SM00490 helicase superfamily c-terminal domain CH61_417 SM01018 B12 binding domain CH61_4170 SM00382 ATPases associated with a variety of cellular activities CH61_4175 SM01230 CH61_4175 CH61_4176 SM00091 PAS domain CH61_4176 SM00387 Histidine kinase-like ATPases CH61_4176 SM00388 His Kinase A (phosphoacceptor) domain CH61_4177 SM00382 ATPases associated with a variety of cellular activities CH61_4177 SM00448 cheY-homologous receiver domain CH61_4178 SM00729 Elongator protein 3, MiaB family, Radical SAM CH61_418 SM00912 haemagglutination activity domain CH61_4183 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH61_4183 SM00474 3'-5' exonuclease CH61_4183 SM00475 5'-3' exonuclease CH61_4183 SM00482 DNA polymerase A domain CH61_4195 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH61_4195 SM00895 CH61_4195 CH61_4201 SM00382 ATPases associated with a variety of cellular activities CH61_4202 SM00327 von Willebrand factor (vWF) type A domain CH61_4204 SM00344 helix_turn_helix ASNC type CH61_4206 SM01228 CH61_4206 CH61_4215 SM00382 ATPases associated with a variety of cellular activities CH61_4222 SM00382 ATPases associated with a variety of cellular activities CH61_4225 SM00062 Bacterial periplasmic substrate-binding proteins CH61_4244 SM00342 helix_turn_helix, arabinose operon control protein CH61_4253 SM00382 ATPases associated with a variety of cellular activities CH61_4267 SM00364 Leucine-rich repeats, bacterial type CH61_427 SM00382 ATPases associated with a variety of cellular activities CH61_4278 SM00470 ParB-like nuclease domain CH61_4287 SM00382 ATPases associated with a variety of cellular activities CH61_4296 SM00857 Resolvase, N terminal domain CH61_4316 SM00220 Serine/Threonine protein kinases, catalytic domain CH61_4319 SM00194 Protein tyrosine phosphatase, catalytic domain CH61_4319 SM00404 Protein tyrosine phosphatase, catalytic domain motif CH61_4331 SM00382 ATPases associated with a variety of cellular activities CH61_4332 SM00470 ParB-like nuclease domain CH61_4336 SM00857 Resolvase, N terminal domain CH61_4340 SM00155 Phospholipase D. Active site motifs. CH61_4355 SM00481 DNA polymerase alpha chain like domain CH61_4358 SM00382 ATPases associated with a variety of cellular activities CH61_4365 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH61_4365 SM00475 5'-3' exonuclease CH61_4369 SM00244 prohibitin homologues CH61_4379 SM00062 Bacterial periplasmic substrate-binding proteins CH61_44 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH61_44 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH61_44 SM01358 CH61_44 CH61_440 SM00382 ATPases associated with a variety of cellular activities CH61_448 SM00382 ATPases associated with a variety of cellular activities CH61_448 SM01086 C-terminal, D2-small domain, of ClpB protein CH61_459 SM00860 SMI1 / KNR4 family CH61_462 SM00530 Helix-turn-helix XRE-family like proteins CH61_47 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH61_470 SM00342 helix_turn_helix, arabinose operon control protein CH61_473 SM01133 CH61_473 CH61_475 SM00062 Bacterial periplasmic substrate-binding proteins CH61_478 SM00382 ATPases associated with a variety of cellular activities CH61_485 SM00382 ATPases associated with a variety of cellular activities CH61_493 SM01321 CH61_493 CH61_494 SM00357 Cold shock protein domain CH61_495 SM00357 Cold shock protein domain CH61_497 SM00849 Metallo-beta-lactamase superfamily CH61_501 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH61_501 SM00895 CH61_501 CH61_509 SM00878 Biotin carboxylase C-terminal domain CH61_514 SM00829 Enoylreductase CH61_515 SM00052 Putative diguanylate phosphodiesterase CH61_515 SM00267 diguanylate cyclase CH61_520 SM00316 Ribosomal protein S1-like RNA-binding domain CH61_547 SM00642 Alpha-amylase domain CH61_549 SM00354 helix_turn _helix lactose operon repressor CH61_564 SM00382 ATPases associated with a variety of cellular activities CH61_568 SM00116 Domain in cystathionine beta-synthase and other proteins. CH61_570 SM00382 ATPases associated with a variety of cellular activities CH61_577 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH61_578 SM01321 CH61_578 CH61_579 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH61_589 SM00729 Elongator protein 3, MiaB family, Radical SAM CH61_590 SM00073 Histidine Phosphotransfer domain CH61_590 SM00091 PAS domain CH61_590 SM00387 Histidine kinase-like ATPases CH61_590 SM00388 His Kinase A (phosphoacceptor) domain CH61_590 SM00448 cheY-homologous receiver domain CH61_593 SM00749 bacterial OsmY and nodulation domain CH61_601 SM00382 ATPases associated with a variety of cellular activities CH61_610 SM01321 CH61_610 CH61_619 SM00116 Domain in cystathionine beta-synthase and other proteins. CH61_619 SM01091 Transporter associated domain CH61_637 SM00387 Histidine kinase-like ATPases CH61_637 SM00388 His Kinase A (phosphoacceptor) domain CH61_638 SM00448 cheY-homologous receiver domain CH61_638 SM00862 Transcriptional regulatory protein, C terminal CH61_641 SM01103 CH61_641 CH61_643 SM00382 ATPases associated with a variety of cellular activities CH61_650 SM00316 Ribosomal protein S1-like RNA-binding domain CH61_650 SM00322 K homology RNA-binding domain CH61_654 SM01387 CH61_654 CH61_657 SM00316 Ribosomal protein S1-like RNA-binding domain CH61_657 SM00322 K homology RNA-binding domain CH61_658 SM00028 Tetratricopeptide repeats CH61_659 SM00487 DEAD-like helicases superfamily CH61_659 SM00490 helicase superfamily c-terminal domain CH61_661 SM00530 Helix-turn-helix XRE-family like proteins CH61_677 SM00382 ATPases associated with a variety of cellular activities CH61_680 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH61_681 SM00849 Metallo-beta-lactamase superfamily CH61_682 SM00072 Guanylate kinase homologues. CH61_684 SM00382 ATPases associated with a variety of cellular activities CH61_685 SM00382 ATPases associated with a variety of cellular activities CH61_690 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH61_690 SM00866 CH61_690 CH61_694 SM00382 ATPases associated with a variety of cellular activities CH61_695 SM00382 ATPases associated with a variety of cellular activities CH61_713 SM00382 ATPases associated with a variety of cellular activities CH61_716 SM01321 CH61_716 CH61_72 SM00382 ATPases associated with a variety of cellular activities CH61_720 SM01240 CH61_720 CH61_725 SM00644 CH61_725 CH61_728 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH61_728 SM00895 CH61_728 CH61_732 SM01321 CH61_732 CH61_74 SM00342 helix_turn_helix, arabinose operon control protein CH61_741 SM00947 Carbonic anhydrase CH61_742 SM00382 ATPases associated with a variety of cellular activities CH61_754 SM00487 DEAD-like helicases superfamily CH61_754 SM00490 helicase superfamily c-terminal domain CH61_754 SM00847 Helicase associated domain (HA2) Add an annotation CH61_756 SM00382 ATPases associated with a variety of cellular activities CH61_765 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH61_766 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH61_767 SM00073 Histidine Phosphotransfer domain CH61_767 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH61_767 SM00387 Histidine kinase-like ATPases CH61_767 SM00388 His Kinase A (phosphoacceptor) domain CH61_767 SM00448 cheY-homologous receiver domain CH61_768 SM00954 Region found in RelA / SpoT proteins CH61_771 SM01192 CH61_771 CH61_771 SM01193 CH61_771 CH61_793 SM00257 Lysin motif CH61_795 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CH61_795 SM00534 ATPase domain of DNA mismatch repair MUTS family CH61_797 SM00829 Enoylreductase CH61_8 SM00382 ATPases associated with a variety of cellular activities CH61_8 SM00760 Bacterial dnaA protein helix-turn-helix domain CH61_800 SM01120 CH61_800 CH61_803 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH61_806 SM00062 Bacterial periplasmic substrate-binding proteins CH61_807 SM01235 CH61_807 CH61_81 SM00530 Helix-turn-helix XRE-family like proteins CH61_819 SM00382 ATPases associated with a variety of cellular activities CH61_823 SM00420 helix_turn_helix, Deoxyribose operon repressor CH61_823 SM01134 CH61_823 CH61_824 SM01007 Class II Aldolase and Adducin N-terminal domain CH61_825 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH61_83 SM00382 ATPases associated with a variety of cellular activities CH61_834 SM00382 ATPases associated with a variety of cellular activities CH61_837 SM00861 Transketolase, pyrimidine binding domain CH61_843 SM00382 ATPases associated with a variety of cellular activities CH61_845 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH61_855 SM01321 CH61_855 CH61_856 SM01321 CH61_856 CH61_857 SM01091 Transporter associated domain CH61_859 SM00382 ATPases associated with a variety of cellular activities CH61_859 SM00962 SRP54-type protein, GTPase domain CH61_859 SM00963 SRP54-type protein, helical bundle domain CH61_864 SM01321 CH61_864 CH61_869 SM00448 cheY-homologous receiver domain CH61_869 SM00850 LytTr DNA-binding domain CH61_871 SM00830 Chorismate mutase type II CH61_876 SM00830 Chorismate mutase type II CH61_877 SM01321 CH61_877 CH61_880 SM00363 S4 RNA-binding domain CH61_882 SM00382 ATPases associated with a variety of cellular activities CH61_882 SM01086 C-terminal, D2-small domain, of ClpB protein CH61_890 SM00155 Phospholipase D. Active site motifs. CH61_891 SM00881 CoA binding domain CH61_892 SM01144 CH61_892 CH61_894 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH61_897 SM00347 helix_turn_helix multiple antibiotic resistance protein CH61_9 SM00480 DNA polymerase III beta subunit CH61_905 SM00062 Bacterial periplasmic substrate-binding proteins CH61_908 SM00382 ATPases associated with a variety of cellular activities CH61_910 SM00382 ATPases associated with a variety of cellular activities CH61_915 SM00382 ATPases associated with a variety of cellular activities CH61_926 SM00357 Cold shock protein domain CH61_930 SM00382 ATPases associated with a variety of cellular activities CH61_931 SM00382 ATPases associated with a variety of cellular activities CH61_936 SM00988 UreE urease accessory protein, N-terminal domain CH61_949 SM00342 helix_turn_helix, arabinose operon control protein CH61_958 SM00448 cheY-homologous receiver domain CH61_958 SM00862 Transcriptional regulatory protein, C terminal CH61_959 SM00387 Histidine kinase-like ATPases CH61_959 SM00388 His Kinase A (phosphoacceptor) domain CH61_969 SM00796 Allophanate hydrolase subunit 1 CH61_97 SM00421 helix_turn_helix, Lux Regulon CH61_97 SM00448 cheY-homologous receiver domain CH61_970 SM00797 Allophanate hydrolase subunit 2 CH61_975 SM00986 Uracil DNA glycosylase superfamily CH61_975 SM00987 UreE urease accessory protein, C-terminal domain CH61_979 SM00248 ankyrin repeats CH61_981 SM00487 DEAD-like helicases superfamily CH61_981 SM00490 helicase superfamily c-terminal domain CH61_991 SM00358 Double-stranded RNA binding motif CH61_991 SM00535 Ribonuclease III family CH61_996 SM00382 ATPases associated with a variety of cellular activities