locus-tag class description CH46_1 PF04402 Protein of unknown function (DUF541) CH46_10 PF01494 FAD binding domain CH46_1000 PF01526 Tn3 transposase DDE domain CH46_1000 PF13700 Domain of unknown function (DUF4158) CH46_1005 PF07690 Major Facilitator Superfamily CH46_1006 PF13276 HTH-like domain CH46_1006 PF13333 Integrase core domain CH46_1006 PF00665 Integrase core domain CH46_1008 PF01757 Acyltransferase family CH46_1009 PF00419 Fimbrial protein CH46_1010 PF13954 PapC N-terminal domain CH46_1010 PF00577 Outer membrane usher protein CH46_1010 PF13953 PapC C-terminal domain CH46_1011 PF00577 Outer membrane usher protein CH46_1011 PF13954 PapC N-terminal domain CH46_1011 PF13953 PapC C-terminal domain CH46_1012 PF02753 Pili assembly chaperone PapD, C-terminal domain CH46_1012 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH46_1014 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH46_1014 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH46_1016 PF13407 Periplasmic binding protein domain CH46_1017 PF00005 ABC transporter CH46_1018 PF02653 Branched-chain amino acid transport system / permease component CH46_1019 PF12833 Helix-turn-helix domain CH46_102 PF00482 Type II secretion system (T2SS), protein F CH46_1021 PF13356 Arm DNA-binding domain CH46_1021 PF00589 Phage integrase family CH46_1021 PF14659 Phage integrase, N-terminal SAM-like domain CH46_1023 PF04606 Ogr/Delta-like zinc finger CH46_1024 PF13737 Transposase DDE domain CH46_1025 PF13737 Transposase DDE domain CH46_1028 PF00005 ABC transporter CH46_103 PF07963 Prokaryotic N-terminal methylation motif CH46_103 PF08334 Type II secretion system (T2SS), protein G CH46_1030 PF01032 FecCD transport family CH46_1031 PF01032 FecCD transport family CH46_1032 PF01497 Periplasmic binding protein CH46_1035 PF00156 Phosphoribosyl transferase domain CH46_1036 PF00291 Pyridoxal-phosphate dependent enzyme CH46_1037 PF17392 Urocanase C-terminal domain CH46_1037 PF01175 Urocanase Rossmann-like domain CH46_1037 PF17391 Urocanase N-terminal domain CH46_1038 PF00221 Aromatic amino acid lyase CH46_1039 PF00324 Amino acid permease CH46_1040 PF12146 Serine aminopeptidase, S33 CH46_1041 PF00884 Sulfatase CH46_1041 PF08019 Phosphoethanolamine transferase EptA/EptB CH46_1042 PF00072 Response regulator receiver domain CH46_1042 PF00196 Bacterial regulatory proteins, luxR family CH46_1043 PF05231 MASE1 CH46_1043 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_1043 PF07730 Histidine kinase CH46_1044 PF02796 Helix-turn-helix domain of resolvase CH46_1044 PF00665 Integrase core domain CH46_1045 PF01695 IstB-like ATP binding protein CH46_1046 PF01695 IstB-like ATP binding protein CH46_1047 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_1047 PF07730 Histidine kinase CH46_1047 PF05231 MASE1 CH46_1048 PF07690 Major Facilitator Superfamily CH46_1051 PF13332 Hemagglutinin repeat CH46_1051 PF05860 haemagglutination activity domain CH46_1051 PF05594 Haemagluttinin repeat CH46_1051 PF04829 Pre-toxin domain with VENN motif CH46_1052 PF08479 POTRA domain, ShlB-type CH46_1052 PF17287 POTRA domain CH46_1052 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH46_1054 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH46_1055 PF00528 Binding-protein-dependent transport system inner membrane component CH46_1056 PF12911 N-terminal TM domain of oligopeptide transport permease C CH46_1056 PF00528 Binding-protein-dependent transport system inner membrane component CH46_1057 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH46_1057 PF00005 ABC transporter CH46_1058 PF00005 ABC transporter CH46_1058 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH46_1059 PF01270 Glycosyl hydrolases family 8 CH46_1060 PF00672 HAMP domain CH46_1060 PF17154 Gammaproteobacterial periplasmic sensor domain CH46_1060 PF00563 EAL domain CH46_1060 PF00990 Diguanylate cyclase, GGDEF domain CH46_1061 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH46_1062 PF06917 Periplasmic pectate lyase CH46_1064 PF00375 Sodium:dicarboxylate symporter family CH46_1066 PF00675 Insulinase (Peptidase family M16) CH46_1066 PF05193 Peptidase M16 inactive domain CH46_1067 PF00294 pfkB family carbohydrate kinase CH46_1068 PF01361 Tautomerase enzyme CH46_1069 PF00563 EAL domain CH46_1070 PF02611 CDP-diacylglycerol pyrophosphatase CH46_1071 PF05170 AsmA family CH46_1072 PF03631 Virulence factor BrkB CH46_1077 PF02595 Glycerate kinase family CH46_1078 PF02447 GntP family permease CH46_1079 PF13556 PucR C-terminal helix-turn-helix domain CH46_1079 PF17853 GGDEF-like domain CH46_1079 PF05651 Putative sugar diacid recognition CH46_1080 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH46_1080 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH46_1081 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CH46_1082 PF01432 Peptidase family M3 CH46_1083 PF04445 Putative SAM-dependent methyltransferase CH46_1084 PF08548 Peptidase M10 serralysin C terminal CH46_1084 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CH46_1084 PF00413 Matrixin CH46_1085 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CH46_1085 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH46_1086 PF00582 Universal stress protein family CH46_1087 PF10625 Universal stress protein B (UspB) CH46_1088 PF01797 Transposase IS200 like CH46_1089 PF01384 Phosphate transporter family CH46_1091 PF00072 Response regulator receiver domain CH46_1091 PF00512 His Kinase A (phospho-acceptor) domain CH46_1091 PF13188 PAS domain CH46_1091 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_1091 PF08448 PAS fold CH46_1092 PF00005 ABC transporter CH46_1093 PF02653 Branched-chain amino acid transport system / permease component CH46_1094 PF13407 Periplasmic binding protein domain CH46_1096 PF01116 Fructose-bisphosphate aldolase class-II CH46_1098 PF00486 Transcriptional regulatory protein, C terminal CH46_1098 PF00072 Response regulator receiver domain CH46_11 PF08669 Glycine cleavage T-protein C-terminal barrel domain CH46_11 PF01571 Aminomethyltransferase folate-binding domain CH46_110 PF06750 Bacterial Peptidase A24 N-terminal domain CH46_110 PF01478 Type IV leader peptidase family CH46_1100 PF02678 Pirin CH46_1100 PF17954 Quercetinase C-terminal cupin domain CH46_1101 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH46_1101 PF00356 Bacterial regulatory proteins, lacI family CH46_1102 PF02447 GntP family permease CH46_1103 PF01202 Shikimate kinase CH46_1107 PF01914 MarC family integral membrane protein CH46_1108 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH46_1108 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH46_1113 PF02369 Bacterial Ig-like domain (group 1) CH46_1113 PF11924 Inverse autotransporter, beta-domain CH46_1113 PF07979 Intimin C-type lectin domain CH46_1113 PF09134 Invasin, domain 3 CH46_1116 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH46_1116 PF00128 Alpha amylase, catalytic domain CH46_1116 PF02806 Alpha amylase, C-terminal all-beta domain CH46_1117 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH46_1117 PF18390 Glycogen debranching enzyme C-terminal domain CH46_1117 PF00128 Alpha amylase, catalytic domain CH46_1118 PF00483 Nucleotidyl transferase CH46_1119 PF08323 Starch synthase catalytic domain CH46_1119 PF00534 Glycosyl transferases group 1 CH46_1120 PF00343 Carbohydrate phosphorylase CH46_1121 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CH46_1121 PF01266 FAD dependent oxidoreductase CH46_1124 PF00665 Integrase core domain CH46_1124 PF13276 HTH-like domain CH46_1124 PF13333 Integrase core domain CH46_1126 PF02796 Helix-turn-helix domain of resolvase CH46_1126 PF00665 Integrase core domain CH46_1127 PF01695 IstB-like ATP binding protein CH46_1129 PF00311 Phosphoenolpyruvate carboxylase CH46_1130 PF01546 Peptidase family M20/M25/M40 CH46_1130 PF07687 Peptidase dimerisation domain CH46_1131 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH46_1131 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH46_1132 PF00696 Amino acid kinase family CH46_1133 PF14698 Argininosuccinate lyase C-terminal CH46_1133 PF00206 Lyase CH46_1135 PF07715 TonB-dependent Receptor Plug Domain CH46_1135 PF00593 TonB dependent receptor CH46_1137 PF00664 ABC transporter transmembrane region CH46_1137 PF00005 ABC transporter CH46_1138 PF00529 HlyD membrane-fusion protein of T1SS CH46_1139 PF03544 Gram-negative bacterial TonB protein C-terminal CH46_1140 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH46_1140 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH46_1141 PF08534 Redoxin CH46_1141 PF00462 Glutaredoxin CH46_1142 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH46_1142 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH46_1143 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_1143 PF03466 LysR substrate binding domain CH46_1145 PF00440 Bacterial regulatory proteins, tetR family CH46_1146 PF07226 Protein of unknown function (DUF1422) CH46_1147 PF05958 tRNA (Uracil-5-)-methyltransferase CH46_1148 PF00593 TonB dependent receptor CH46_1148 PF07715 TonB-dependent Receptor Plug Domain CH46_1149 PF01177 Asp/Glu/Hydantoin racemase CH46_115 PF00672 HAMP domain CH46_115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH46_115 PF02203 Tar ligand binding domain homologue CH46_1156 PF13407 Periplasmic binding protein domain CH46_1157 PF00005 ABC transporter CH46_1158 PF02653 Branched-chain amino acid transport system / permease component CH46_1159 PF03466 LysR substrate binding domain CH46_1159 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_1160 PF02653 Branched-chain amino acid transport system / permease component CH46_1161 PF04219 Protein of unknown function, DUF CH46_1162 PF01078 Magnesium chelatase, subunit ChlI CH46_1162 PF13335 Magnesium chelatase, subunit ChlI C-terminal CH46_1163 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH46_1163 PF00205 Thiamine pyrophosphate enzyme, central domain CH46_1163 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH46_1165 PF01063 Amino-transferase class IV CH46_1166 PF00920 Dehydratase family CH46_1167 PF00585 C-terminal regulatory domain of Threonine dehydratase CH46_1167 PF00291 Pyridoxal-phosphate dependent enzyme CH46_117 PF03466 LysR substrate binding domain CH46_117 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_1174 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_1174 PF03466 LysR substrate binding domain CH46_1175 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CH46_1175 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CH46_118 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_118 PF03466 LysR substrate binding domain CH46_1180 PF01320 Colicin immunity protein / pyocin immunity protein CH46_1181 PF02753 Pili assembly chaperone PapD, C-terminal domain CH46_1181 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH46_1183 PF00577 Outer membrane usher protein CH46_1183 PF13953 PapC C-terminal domain CH46_1183 PF13954 PapC N-terminal domain CH46_1184 PF02753 Pili assembly chaperone PapD, C-terminal domain CH46_1184 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH46_1186 PF00872 Transposase, Mutator family CH46_1189 PF00580 UvrD/REP helicase N-terminal domain CH46_1189 PF13361 UvrD-like helicase C-terminal domain CH46_119 PF07690 Major Facilitator Superfamily CH46_1192 PF00271 Helicase conserved C-terminal domain CH46_1192 PF00270 DEAD/DEAH box helicase CH46_1193 PF00085 Thioredoxin CH46_1194 PF07497 Rho termination factor, RNA-binding domain CH46_1194 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH46_1194 PF07498 Rho termination factor, N-terminal domain CH46_1195 PF00953 Glycosyl transferase family 4 CH46_1196 PF02706 Chain length determinant protein CH46_1197 PF02350 UDP-N-acetylglucosamine 2-epimerase CH46_1198 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH46_1198 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH46_1198 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH46_1199 PF16363 GDP-mannose 4,6 dehydratase CH46_12 PF01597 Glycine cleavage H-protein CH46_120 PF00356 Bacterial regulatory proteins, lacI family CH46_1200 PF00483 Nucleotidyl transferase CH46_1202 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH46_1203 PF01943 Polysaccharide biosynthesis protein CH46_1204 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 CH46_1205 PF06899 WzyE protein, O-antigen assembly polymerase CH46_1206 PF03808 Glycosyl transferase WecB/TagA/CpsF family CH46_1207 PF00324 Amino acid permease CH46_121 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CH46_121 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH46_1213 PF01797 Transposase IS200 like CH46_1214 PF07219 HemY protein N-terminus CH46_1214 PF07719 Tetratricopeptide repeat CH46_1215 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CH46_1216 PF02602 Uroporphyrinogen-III synthase HemD CH46_1217 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CH46_1217 PF03900 Porphobilinogen deaminase, C-terminal domain CH46_1218 PF12633 Adenylate cyclase NT domain CH46_1218 PF01295 Adenylate cyclase, class-I CH46_1219 PF01491 Frataxin-like domain CH46_122 PF00384 Molybdopterin oxidoreductase CH46_122 PF01568 Molydopterin dinucleotide binding domain CH46_1220 PF13627 Prokaryotic lipoprotein-attachment site CH46_1221 PF01678 Diaminopimelate epimerase CH46_1222 PF04340 Protein of unknown function, DUF484 CH46_1223 PF00589 Phage integrase family CH46_1223 PF02899 Phage integrase, N-terminal SAM-like domain CH46_1224 PF13419 Haloacid dehalogenase-like hydrolase CH46_1225 PF13361 UvrD-like helicase C-terminal domain CH46_1225 PF00580 UvrD/REP helicase N-terminal domain CH46_1228 PF09370 Phosphoenolpyruvate hydrolase-like CH46_1229 PF01544 CorA-like Mg2+ transporter protein CH46_123 PF01553 Acyltransferase CH46_123 PF00501 AMP-binding enzyme CH46_123 PF13193 AMP-binding enzyme C-terminal domain CH46_1230 PF00892 EamA-like transporter family CH46_1231 PF03061 Thioesterase superfamily CH46_1232 PF02253 Phospholipase A1 CH46_1233 PF00570 HRDC domain CH46_1233 PF00271 Helicase conserved C-terminal domain CH46_1233 PF09382 RQC domain CH46_1233 PF16124 RecQ zinc-binding CH46_1233 PF00270 DEAD/DEAH box helicase CH46_1234 PF01810 LysE type translocator CH46_1235 PF01810 LysE type translocator CH46_1236 PF12146 Serine aminopeptidase, S33 CH46_1239 PF03009 Glycerophosphoryl diester phosphodiesterase family CH46_124 PF07690 Major Facilitator Superfamily CH46_1240 PF01266 FAD dependent oxidoreductase CH46_1240 PF04324 BFD-like [2Fe-2S] binding domain CH46_1241 PF00890 FAD binding domain CH46_1242 PF02754 Cysteine-rich domain CH46_1242 PF13183 4Fe-4S dicluster domain CH46_1243 PF08786 DcrB CH46_1244 PF02592 Putative vitamin uptake transporter CH46_1245 PF01206 Sulfurtransferase TusA CH46_1246 PF00403 Heavy-metal-associated domain CH46_1247 PF07947 YhhN family CH46_1250 PF06611 Protein of unknown function (DUF1145) CH46_1252 PF00448 SRP54-type protein, GTPase domain CH46_1252 PF02881 SRP54-type protein, helical bundle domain CH46_1252 PF02881 SRP54-type protein, helical bundle domain CH46_1252 PF00448 SRP54-type protein, GTPase domain CH46_1253 PF00005 ABC transporter CH46_1254 PF02687 FtsX-like permease family CH46_1254 PF18075 FtsX extracellular domain CH46_1255 PF00140 Sigma-70 factor, region 1.2 CH46_1255 PF04542 Sigma-70 region 2 CH46_1255 PF04545 Sigma-70, region 4 CH46_1256 PF01797 Transposase IS200 like CH46_1257 PF12568 Acetyltransferase (GNAT) domain, PanZ CH46_1258 PF13458 Periplasmic binding protein CH46_1259 PF02653 Branched-chain amino acid transport system / permease component CH46_1260 PF11862 Domain of unknown function (DUF3382) CH46_1260 PF02653 Branched-chain amino acid transport system / permease component CH46_1261 PF00005 ABC transporter CH46_1261 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH46_1262 PF00005 ABC transporter CH46_127 PF00248 Aldo/keto reductase family CH46_1270 PF13416 Bacterial extracellular solute-binding protein CH46_1271 PF00528 Binding-protein-dependent transport system inner membrane component CH46_1272 PF00528 Binding-protein-dependent transport system inner membrane component CH46_1273 PF00005 ABC transporter CH46_1273 PF17912 MalK OB fold domain CH46_1274 PF03009 Glycerophosphoryl diester phosphodiesterase family CH46_1275 PF03547 Membrane transport protein CH46_1276 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_1276 PF03466 LysR substrate binding domain CH46_1277 PF00892 EamA-like transporter family CH46_1278 PF08267 Cobalamin-independent synthase, N-terminal domain CH46_1278 PF01717 Cobalamin-independent synthase, Catalytic domain CH46_1279 PF01738 Dienelactone hydrolase family CH46_128 PF02976 DNA mismatch repair enzyme MutH CH46_1280 PF01048 Phosphorylase superfamily CH46_1282 PF13722 5TM C-terminal transporter carbon starvation CstA CH46_1282 PF02554 Carbon starvation protein CstA CH46_1283 PF09335 SNARE associated Golgi protein CH46_1284 PF02646 RmuC family CH46_1285 PF01209 ubiE/COQ5 methyltransferase family CH46_1286 PF02036 SCP-2 sterol transfer family CH46_1287 PF03109 ABC1 family CH46_1288 PF02416 mttA/Hcf106 family CH46_129 PF00293 NUDIX domain CH46_1290 PF00902 Sec-independent protein translocase protein (TatC) CH46_1291 PF01026 TatD related DNase CH46_1292 PF02796 Helix-turn-helix domain of resolvase CH46_1292 PF00665 Integrase core domain CH46_1293 PF01695 IstB-like ATP binding protein CH46_1294 PF01026 TatD related DNase CH46_1295 PF00490 Delta-aminolevulinic acid dehydratase CH46_1296 PF02357 Transcription termination factor nusG CH46_1297 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CH46_1298 PF00175 Oxidoreductase NAD-binding domain CH46_1298 PF00970 Oxidoreductase FAD-binding domain CH46_1299 PF00108 Thiolase, N-terminal domain CH46_1299 PF02803 Thiolase, C-terminal domain CH46_13 PF02347 Glycine cleavage system P-protein CH46_130 PF02896 PEP-utilising enzyme, TIM barrel domain CH46_130 PF00391 PEP-utilising enzyme, mobile domain CH46_130 PF05524 PEP-utilising enzyme, N-terminal CH46_130 PF01590 GAF domain CH46_1300 PF00378 Enoyl-CoA hydratase/isomerase CH46_1300 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH46_1300 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH46_1301 PF00557 Metallopeptidase family M24 CH46_1302 PF09186 Domain of unknown function (DUF1949) CH46_1302 PF01205 Uncharacterized protein family UPF0029 CH46_1303 PF01797 Transposase IS200 like CH46_1304 PF09186 Domain of unknown function (DUF1949) CH46_1304 PF01205 Uncharacterized protein family UPF0029 CH46_1305 PF02386 Cation transport protein CH46_1306 PF12724 Flavodoxin domain CH46_131 PF01790 Prolipoprotein diacylglyceryl transferase CH46_1313 PF01565 FAD binding domain CH46_1313 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CH46_1314 PF08279 HTH domain CH46_1314 PF02237 Biotin protein ligase C terminal domain CH46_1314 PF03099 Biotin/lipoate A/B protein ligase family CH46_1315 PF00485 Phosphoribulokinase / Uridine kinase family CH46_1316 PF13673 Acetyltransferase (GNAT) domain CH46_1317 PF00665 Integrase core domain CH46_1317 PF02796 Helix-turn-helix domain of resolvase CH46_1318 PF01695 IstB-like ATP binding protein CH46_132 PF00303 Thymidylate synthase CH46_1323 PF03143 Elongation factor Tu C-terminal domain CH46_1323 PF03144 Elongation factor Tu domain 2 CH46_1323 PF00009 Elongation factor Tu GTP binding domain CH46_1324 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CH46_1325 PF02357 Transcription termination factor nusG CH46_1325 PF00467 KOW motif CH46_1326 PF03946 Ribosomal protein L11, N-terminal domain CH46_1326 PF00298 Ribosomal protein L11, RNA binding domain CH46_1327 PF00687 Ribosomal protein L1p/L10e family CH46_1328 PF00466 Ribosomal protein L10 CH46_1329 PF00542 Ribosomal protein L7/L12 C-terminal domain CH46_1329 PF16320 Ribosomal protein L7/L12 dimerisation domain CH46_1330 PF04565 RNA polymerase Rpb2, domain 3 CH46_1330 PF04561 RNA polymerase Rpb2, domain 2 CH46_1330 PF10385 RNA polymerase beta subunit external 1 domain CH46_1330 PF00562 RNA polymerase Rpb2, domain 6 CH46_1330 PF04563 RNA polymerase beta subunit CH46_1330 PF04560 RNA polymerase Rpb2, domain 7 CH46_1331 PF05000 RNA polymerase Rpb1, domain 4 CH46_1331 PF04997 RNA polymerase Rpb1, domain 1 CH46_1331 PF00623 RNA polymerase Rpb1, domain 2 CH46_1331 PF04983 RNA polymerase Rpb1, domain 3 CH46_1331 PF04998 RNA polymerase Rpb1, domain 5 CH46_1332 PF01797 Transposase IS200 like CH46_1333 PF04055 Radical SAM superfamily CH46_1333 PF06968 Biotin and Thiamin Synthesis associated domain CH46_1334 PF05690 Thiazole biosynthesis protein ThiG CH46_1336 PF00899 ThiF family CH46_1337 PF02581 Thiamine monophosphate synthase CH46_1338 PF01964 Radical SAM ThiC family CH46_1338 PF13667 ThiC-associated domain CH46_1339 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CH46_1340 PF00293 NUDIX domain CH46_1340 PF09297 NADH pyrophosphatase zinc ribbon domain CH46_1342 PF01208 Uroporphyrinogen decarboxylase (URO-D) CH46_1343 PF04493 Endonuclease V CH46_1344 PF04222 Protein of unknown function (DUF416) CH46_1345 PF00216 Bacterial DNA-binding protein CH46_1346 PF07356 Protein of unknown function (DUF1481) CH46_1347 PF02844 Phosphoribosylglycinamide synthetase, N domain CH46_1347 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CH46_1347 PF02843 Phosphoribosylglycinamide synthetase, C domain CH46_1348 PF01808 AICARFT/IMPCHase bienzyme CH46_1348 PF02142 MGS-like domain CH46_135 PF02796 Helix-turn-helix domain of resolvase CH46_135 PF00665 Integrase core domain CH46_1359 PF04204 Homoserine O-succinyltransferase CH46_1360 PF01274 Malate synthase CH46_1361 PF00463 Isocitrate lyase family CH46_1362 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CH46_1363 PF09339 IclR helix-turn-helix domain CH46_1363 PF01614 Bacterial transcriptional regulator CH46_1364 PF09339 IclR helix-turn-helix domain CH46_1364 PF01614 Bacterial transcriptional regulator CH46_1365 PF02607 B12 binding domain CH46_1365 PF02965 Vitamin B12 dependent methionine synthase, activation domain CH46_1365 PF00809 Pterin binding enzyme CH46_1365 PF02310 B12 binding domain CH46_1365 PF02574 Homocysteine S-methyltransferase CH46_1366 PF05860 haemagglutination activity domain CH46_1366 PF13332 Hemagglutinin repeat CH46_1367 PF17287 POTRA domain CH46_1367 PF08479 POTRA domain, ShlB-type CH46_1367 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH46_1368 PF00696 Amino acid kinase family CH46_1368 PF01842 ACT domain CH46_1369 PF00342 Phosphoglucose isomerase CH46_137 PF01695 IstB-like ATP binding protein CH46_1370 PF06146 Phosphate-starvation-inducible E CH46_1371 PF00528 Binding-protein-dependent transport system inner membrane component CH46_1372 PF14785 Maltose transport system permease protein MalF P2 domain CH46_1372 PF00528 Binding-protein-dependent transport system inner membrane component CH46_1373 PF01547 Bacterial extracellular solute-binding protein CH46_1375 PF17912 MalK OB fold domain CH46_1375 PF00005 ABC transporter CH46_1376 PF02264 LamB porin CH46_1377 PF07148 Maltose operon periplasmic protein precursor (MalM) CH46_1379 PF05638 Type VI secretion system effector, Hcp CH46_138 PF00550 Phosphopantetheine attachment site CH46_138 PF08242 Methyltransferase domain CH46_138 PF00668 Condensation domain CH46_138 PF00501 AMP-binding enzyme CH46_1383 PF00665 Integrase core domain CH46_1383 PF13333 Integrase core domain CH46_1383 PF13276 HTH-like domain CH46_139 PF00501 AMP-binding enzyme CH46_139 PF00668 Condensation domain CH46_139 PF13193 AMP-binding enzyme C-terminal domain CH46_1392 PF17871 AAA lid domain CH46_1392 PF07724 AAA domain (Cdc48 subfamily) CH46_1392 PF00004 ATPase family associated with various cellular activities (AAA) CH46_1392 PF10431 C-terminal, D2-small domain, of ClpB protein CH46_1399 PF04717 Type VI secretion system, phage-baseplate injector CH46_140 PF00550 Phosphopantetheine attachment site CH46_140 PF00668 Condensation domain CH46_140 PF08242 Methyltransferase domain CH46_140 PF00501 AMP-binding enzyme CH46_1402 PF05593 RHS Repeat CH46_1402 PF03527 RHS protein CH46_1402 PF14220 Domain of unknown function (DUF4329) CH46_1408 PF04717 Type VI secretion system, phage-baseplate injector CH46_1410 PF05593 RHS Repeat CH46_1410 PF03527 RHS protein CH46_1413 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH46_1413 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH46_1414 PF02311 AraC-like ligand binding domain CH46_1414 PF12833 Helix-turn-helix domain CH46_1415 PF05025 RbsD / FucU transport protein family CH46_1416 PF00294 pfkB family carbohydrate kinase CH46_1418 PF03358 NADPH-dependent FMN reductase CH46_1419 PF09084 NMT1/THI5 like CH46_1420 PF00296 Luciferase-like monooxygenase CH46_1421 PF00528 Binding-protein-dependent transport system inner membrane component CH46_1422 PF00005 ABC transporter CH46_1423 PF04221 RelB antitoxin CH46_1424 PF00860 Permease family CH46_1425 PF00999 Sodium/hydrogen exchanger family CH46_1427 PF03279 Bacterial lipid A biosynthesis acyltransferase CH46_1429 PF00005 ABC transporter CH46_1430 PF02653 Branched-chain amino acid transport system / permease component CH46_1432 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH46_1432 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH46_1433 PF00571 CBS domain CH46_1433 PF01380 SIS domain CH46_1434 PF02798 Glutathione S-transferase, N-terminal domain CH46_1437 PF01797 Transposase IS200 like CH46_1438 PF00313 'Cold-shock' DNA-binding domain CH46_1439 PF00313 'Cold-shock' DNA-binding domain CH46_144 PF00975 Thioesterase domain CH46_1440 PF05433 Glycine zipper 2TM domain CH46_1441 PF00753 Metallo-beta-lactamase superfamily CH46_1442 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CH46_1442 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH46_1443 PF02627 Carboxymuconolactone decarboxylase family CH46_1444 PF07690 Major Facilitator Superfamily CH46_1447 PF02954 Bacterial regulatory protein, Fis family CH46_1448 PF01207 Dihydrouridine synthase (Dus) CH46_1450 PF00474 Sodium:solute symporter family CH46_1451 PF06196 Protein of unknown function (DUF997) CH46_1453 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH46_1453 PF00289 Biotin carboxylase, N-terminal domain CH46_1453 PF02785 Biotin carboxylase C-terminal domain CH46_1454 PF00364 Biotin-requiring enzyme CH46_1455 PF01220 Dehydroquinase class II CH46_1456 PF01794 Ferric reductase like transmembrane component CH46_1457 PF00174 Oxidoreductase molybdopterin binding domain CH46_1458 PF08240 Alcohol dehydrogenase GroES-like domain CH46_1458 PF00107 Zinc-binding dehydrogenase CH46_1459 PF00563 EAL domain CH46_1459 PF00990 Diguanylate cyclase, GGDEF domain CH46_1459 PF17157 Gammaproteobacterial periplasmic sensor domain CH46_146 PF04954 Siderophore-interacting protein CH46_146 PF08021 Siderophore-interacting FAD-binding domain CH46_146 PF00005 ABC transporter CH46_146 PF00664 ABC transporter transmembrane region CH46_1461 PF04085 rod shape-determining protein MreC CH46_1462 PF04093 rod shape-determining protein MreD CH46_1463 PF02545 Maf-like protein CH46_1464 PF00575 S1 RNA binding domain CH46_1464 PF10150 Ribonuclease E/G family CH46_1465 PF13116 Protein of unknown function CH46_1465 PF13502 AsmA-like C-terminal region CH46_1466 PF00795 Carbon-nitrogen hydrolase CH46_1467 PF01523 Putative modulator of DNA gyrase CH46_1468 PF18807 Tripartite Tc toxins repeat CH46_1468 PF14431 YwqJ-like deaminase CH46_1469 PF18807 Tripartite Tc toxins repeat CH46_1469 PF05785 Rho-activating domain of cytotoxic necrotizing factor CH46_147 PF00664 ABC transporter transmembrane region CH46_147 PF00005 ABC transporter CH46_1473 PF03534 Salmonella virulence plasmid 65kDa B protein CH46_1473 PF12256 Insecticide toxin TcdB middle/N-terminal region CH46_1473 PF12255 Insecticide toxin TcdB middle/C-terminal region CH46_1478 PF03466 LysR substrate binding domain CH46_1478 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_1479 PF07869 Protein of unknown function (DUF1656) CH46_1480 PF13533 Biotin-lipoyl like CH46_1481 PF04632 Fusaric acid resistance protein family CH46_1482 PF00171 Aldehyde dehydrogenase family CH46_1483 PF00171 Aldehyde dehydrogenase family CH46_1485 PF01337 Barstar (barnase inhibitor) CH46_1486 PF04751 Protein of unknown function (DUF615) CH46_1487 PF01523 Putative modulator of DNA gyrase CH46_1489 PF07361 Cytochrome b562 CH46_1490 PF01272 Transcription elongation factor, GreA/GreB, C-term CH46_1490 PF14760 Rnk N-terminus CH46_1491 PF00128 Alpha amylase, catalytic domain CH46_1491 PF11941 Domain of unknown function (DUF3459) CH46_1492 PF00367 phosphotransferase system, EIIB CH46_1492 PF02378 Phosphotransferase system, EIIC CH46_1493 PF00356 Bacterial regulatory proteins, lacI family CH46_1495 PF01695 IstB-like ATP binding protein CH46_1496 PF01695 IstB-like ATP binding protein CH46_1501 PF01042 Endoribonuclease L-PSP CH46_1502 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CH46_1502 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CH46_1503 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH46_1503 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH46_1504 PF00381 PTS HPr component phosphorylation site CH46_1505 PF03668 P-loop ATPase protein family CH46_1506 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH46_1507 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH46_1508 PF04963 Sigma-54 factor, core binding domain CH46_1508 PF00309 Sigma-54 factor, Activator interacting domain (AID) CH46_1508 PF04552 Sigma-54, DNA binding domain CH46_1509 PF00005 ABC transporter CH46_1509 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH46_151 PF02447 GntP family permease CH46_1510 PF03968 OstA-like protein CH46_1511 PF06835 Lipopolysaccharide-assembly, LptC-related CH46_1513 PF01380 SIS domain CH46_1513 PF00571 CBS domain CH46_1514 PF01699 Sodium/calcium exchanger protein CH46_1515 PF00005 ABC transporter CH46_1516 PF02405 Permease MlaE CH46_1517 PF02470 MlaD protein CH46_1518 PF05494 MlaC protein CH46_1519 PF13466 STAS domain CH46_1520 PF01722 BolA-like protein CH46_1521 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH46_1522 PF13180 PDZ domain CH46_1523 PF01797 Transposase IS200 like CH46_1524 PF13180 PDZ domain CH46_1524 PF00595 PDZ domain CH46_1525 PF06295 Protein of unknown function (DUF1043) CH46_1526 PF03969 AFG1-like ATPase CH46_1527 PF00572 Ribosomal protein L13 CH46_1528 PF00380 Ribosomal protein S9/S16 CH46_1529 PF00043 Glutathione S-transferase, C-terminal domain CH46_1529 PF02798 Glutathione S-transferase, N-terminal domain CH46_153 PF12951 Passenger-associated-transport-repeat CH46_1530 PF04386 Stringent starvation protein B CH46_1532 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH46_1532 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH46_1533 PF04898 Glutamate synthase central domain CH46_1533 PF01493 GXGXG motif CH46_1533 PF01645 Conserved region in glutamate synthase CH46_1533 PF00310 Glutamine amidotransferases class-II CH46_1534 PF04055 Radical SAM superfamily CH46_1534 PF16199 Radical_SAM C-terminal domain CH46_1535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_1535 PF00989 PAS fold CH46_1535 PF01627 Hpt domain CH46_1535 PF00072 Response regulator receiver domain CH46_1535 PF18415 Histidine kinase receptor ArcB trans-membrane domain CH46_1535 PF00512 His Kinase A (phospho-acceptor) domain CH46_1537 PF00912 Transglycosylase CH46_1538 PF04972 BON domain CH46_1539 PF13580 SIS domain CH46_154 PF04717 Type VI secretion system, phage-baseplate injector CH46_1540 PF02021 Uncharacterised protein family UPF0102 CH46_1541 PF04348 LppC putative lipoprotein CH46_1542 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH46_1543 PF02678 Pirin CH46_1543 PF17954 Quercetinase C-terminal cupin domain CH46_1544 PF03466 LysR substrate binding domain CH46_1544 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_1545 PF13409 Glutathione S-transferase, N-terminal domain CH46_1546 PF01695 IstB-like ATP binding protein CH46_1547 PF00665 Integrase core domain CH46_1547 PF02796 Helix-turn-helix domain of resolvase CH46_1548 PF00326 Prolyl oligopeptidase family CH46_1550 PF01250 Ribosomal protein S6 CH46_1551 PF01084 Ribosomal protein S18 CH46_1552 PF01281 Ribosomal protein L9, N-terminal domain CH46_1552 PF03948 Ribosomal protein L9, C-terminal domain CH46_1553 PF01797 Transposase IS200 like CH46_1555 PF08525 Opacity-associated protein A N-terminal motif CH46_1555 PF04225 Opacity-associated protein A LysM-like domain CH46_1556 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH46_1556 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH46_1557 PF01814 Hemerythrin HHE cation binding domain CH46_1557 PF04405 Domain of Unknown function (DUF542) CH46_1558 PF02872 5'-nucleotidase, C-terminal domain CH46_1558 PF00149 Calcineurin-like phosphoesterase CH46_1559 PF00459 Inositol monophosphatase family CH46_156 PF05593 RHS Repeat CH46_156 PF03527 RHS protein CH46_1560 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CH46_1561 PF06526 Protein of unknown function (DUF1107) CH46_1562 PF00571 CBS domain CH46_1562 PF03471 Transporter associated domain CH46_1562 PF01595 Cyclin M transmembrane N-terminal domain CH46_1563 PF01625 Peptide methionine sulfoxide reductase CH46_1564 PF07244 Surface antigen variable number repeat CH46_1564 PF01103 Surface antigen CH46_1564 PF17243 POTRA domain TamA domain 1 CH46_1565 PF04357 TamB, inner membrane protein subunit of TAM complex CH46_1566 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CH46_1567 PF00719 Inorganic pyrophosphatase CH46_1568 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CH46_1569 PF08245 Mur ligase middle domain CH46_1569 PF02875 Mur ligase family, glutamate ligase domain CH46_1569 PF01225 Mur ligase family, catalytic domain CH46_1571 PF01316 Arginine repressor, DNA binding domain CH46_1571 PF02863 Arginine repressor, C-terminal domain CH46_1572 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CH46_1572 PF00056 lactate/malate dehydrogenase, NAD binding domain CH46_1573 PF13693 Winged helix-turn-helix DNA-binding CH46_1575 PF00348 Polyprenyl synthetase CH46_1576 PF00829 Ribosomal prokaryotic L21 protein CH46_1577 PF01016 Ribosomal L27 protein CH46_1578 PF00892 EamA-like transporter family CH46_1579 PF01018 GTP1/OBG CH46_1579 PF01926 50S ribosome-binding GTPase CH46_1580 PF00512 His Kinase A (phospho-acceptor) domain CH46_1580 PF00672 HAMP domain CH46_1580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_1581 PF00072 Response regulator receiver domain CH46_1581 PF00486 Transcriptional regulatory protein, C terminal CH46_1582 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CH46_1583 PF03449 Transcription elongation factor, N-terminal CH46_1583 PF01272 Transcription elongation factor, GreA/GreB, C-term CH46_1584 PF01985 CRS1 / YhbY (CRM) domain CH46_1585 PF01728 FtsJ-like methyltransferase CH46_1586 PF06480 FtsH Extracellular CH46_1586 PF01434 Peptidase family M41 CH46_1586 PF00004 ATPase family associated with various cellular activities (AAA) CH46_1586 PF17862 AAA+ lid domain CH46_1587 PF00809 Pterin binding enzyme CH46_1588 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH46_1588 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH46_1588 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH46_1588 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH46_1589 PF03840 Preprotein translocase SecG subunit CH46_159 PF00939 Sodium:sulfate symporter transmembrane region CH46_1592 PF02576 RimP N-terminal domain CH46_1592 PF17384 RimP C-terminal SH3 domain CH46_1593 PF00575 S1 RNA binding domain CH46_1593 PF08529 NusA N-terminal domain CH46_1593 PF13184 NusA-like KH domain CH46_1594 PF04760 Translation initiation factor IF-2, N-terminal region CH46_1594 PF03144 Elongation factor Tu domain 2 CH46_1594 PF08364 Bacterial translation initiation factor IF-2 associated region CH46_1594 PF11987 Translation-initiation factor 2 CH46_1594 PF00009 Elongation factor Tu GTP binding domain CH46_1595 PF02033 Ribosome-binding factor A CH46_1596 PF16198 tRNA pseudouridylate synthase B C-terminal domain CH46_1596 PF01509 TruB family pseudouridylate synthase (N terminal domain) CH46_1596 PF09157 Pseudouridine synthase II TruB, C-terminal CH46_1597 PF00312 Ribosomal protein S15 CH46_1599 PF13333 Integrase core domain CH46_1599 PF00665 Integrase core domain CH46_1599 PF13276 HTH-like domain CH46_16 PF13018 Extended Signal Peptide of Type V secretion system CH46_16 PF03895 YadA-like membrane anchor domain CH46_16 PF05658 Head domain of trimeric autotransporter adhesin CH46_16 PF05662 Coiled stalk of trimeric autotransporter adhesin CH46_160 PF00356 Bacterial regulatory proteins, lacI family CH46_1600 PF00575 S1 RNA binding domain CH46_1600 PF01138 3' exoribonuclease family, domain 1 CH46_1600 PF00013 KH domain CH46_1600 PF03725 3' exoribonuclease family, domain 2 CH46_1600 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CH46_1601 PF13181 Tetratricopeptide repeat CH46_1601 PF07719 Tetratricopeptide repeat CH46_1602 PF12343 Cold shock protein DEAD box A CH46_1602 PF00271 Helicase conserved C-terminal domain CH46_1602 PF03880 DbpA RNA binding domain CH46_1602 PF00270 DEAD/DEAH box helicase CH46_1604 PF01381 Helix-turn-helix CH46_1605 PF00296 Luciferase-like monooxygenase CH46_1607 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH46_1607 PF00529 HlyD membrane-fusion protein of T1SS CH46_1608 PF00873 AcrB/AcrD/AcrF family CH46_1609 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH46_1609 PF02321 Outer membrane efflux protein CH46_161 PF00665 Integrase core domain CH46_161 PF13333 Integrase core domain CH46_161 PF13276 HTH-like domain CH46_1613 PF13508 Acetyltransferase (GNAT) domain CH46_1614 PF01541 GIY-YIG catalytic domain CH46_1617 PF13416 Bacterial extracellular solute-binding protein CH46_1619 PF00528 Binding-protein-dependent transport system inner membrane component CH46_1620 PF00005 ABC transporter CH46_1620 PF03459 TOBE domain CH46_1620 PF17912 MalK OB fold domain CH46_1623 PF13460 NAD(P)H-binding CH46_1624 PF12706 Beta-lactamase superfamily domain CH46_1626 PF07969 Amidohydrolase family CH46_1627 PF00005 ABC transporter CH46_1628 PF00005 ABC transporter CH46_1629 PF06007 Phosphonate metabolism protein PhnJ CH46_1630 PF05861 Bacterial phosphonate metabolism protein (PhnI) CH46_1631 PF05845 Bacterial phosphonate metabolism protein (PhnH) CH46_1632 PF06754 Phosphonate metabolism protein PhnG CH46_1633 PF07702 UTRA domain CH46_1633 PF00392 Bacterial regulatory proteins, gntR family CH46_1636 PF03477 ATP cone domain CH46_1636 PF13597 Anaerobic ribonucleoside-triphosphate reductase CH46_1637 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH46_1637 PF00005 ABC transporter CH46_1638 PF00005 ABC transporter CH46_1638 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH46_1639 PF00528 Binding-protein-dependent transport system inner membrane component CH46_1639 PF12911 N-terminal TM domain of oligopeptide transport permease C CH46_164 PF05433 Glycine zipper 2TM domain CH46_1640 PF00528 Binding-protein-dependent transport system inner membrane component CH46_1643 PF04074 YhcH/YjgK/YiaL CH46_1644 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH46_1644 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH46_1645 PF06877 Regulator of ribonuclease activity B CH46_1646 PF00583 Acetyltransferase (GNAT) family CH46_1647 PF00133 tRNA synthetases class I (I, L, M and V) CH46_1647 PF08264 Anticodon-binding domain of tRNA CH46_1647 PF10458 Valyl tRNA synthetase tRNA binding arm CH46_1648 PF04364 DNA polymerase III chi subunit, HolC CH46_1649 PF00883 Cytosol aminopeptidase family, catalytic domain CH46_1649 PF02789 Cytosol aminopeptidase family, N-terminal domain CH46_165 PF05433 Glycine zipper 2TM domain CH46_1650 PF03739 Lipopolysaccharide export system permease LptF/LptG CH46_1651 PF03739 Lipopolysaccharide export system permease LptF/LptG CH46_1653 PF13356 Arm DNA-binding domain CH46_1653 PF00589 Phage integrase family CH46_1655 PF08676 MutL C terminal dimerisation domain CH46_1655 PF01119 DNA mismatch repair protein, C-terminal domain CH46_1656 PF01695 IstB-like ATP binding protein CH46_1658 PF02796 Helix-turn-helix domain of resolvase CH46_1658 PF00665 Integrase core domain CH46_1659 PF03884 DNA gyrase inhibitor YacG CH46_1660 PF07072 Cell division protein CH46_1661 PF01121 Dephospho-CoA kinase CH46_1662 PF00478 IMP dehydrogenase / GMP reductase domain CH46_1663 PF00482 Type II secretion system (T2SS), protein F CH46_1664 PF00437 Type II/IV secretion system protein CH46_1664 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CH46_1665 PF07963 Prokaryotic N-terminal methylation motif CH46_1666 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CH46_1666 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CH46_1667 PF01510 N-acetylmuramoyl-L-alanine amidase CH46_1668 PF17113 Regulatory signalling modulator protein AmpE CH46_1669 PF00324 Amino acid permease CH46_1670 PF07729 FCD domain CH46_1670 PF00392 Bacterial regulatory proteins, gntR family CH46_1671 PF00456 Transketolase, thiamine diphosphate binding domain CH46_1671 PF17831 Pyruvate dehydrogenase E1 component middle domain CH46_1672 PF02817 e3 binding domain CH46_1672 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH46_1672 PF00364 Biotin-requiring enzyme CH46_1673 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH46_1673 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH46_1674 PF01797 Transposase IS200 like CH46_1675 PF00330 Aconitase family (aconitate hydratase) CH46_1675 PF11791 Aconitate B N-terminal domain CH46_1675 PF06434 Aconitate hydratase 2 N-terminus CH46_1676 PF06062 Uncharacterised protein family (UPF0231) CH46_1677 PF00892 EamA-like transporter family CH46_1678 PF02675 S-adenosylmethionine decarboxylase CH46_1679 PF17284 Spermidine synthase tetramerisation domain CH46_1680 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) CH46_1681 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH46_1681 PF07732 Multicopper oxidase CH46_1681 PF07731 Multicopper oxidase CH46_1681 PF00394 Multicopper oxidase CH46_1682 PF00156 Phosphoribosyl transferase domain CH46_1683 PF00484 Carbonic anhydrase CH46_1684 PF00005 ABC transporter CH46_1685 PF01061 ABC-2 type transporter CH46_1686 PF01522 Polysaccharide deacetylase CH46_1687 PF02261 Aspartate decarboxylase CH46_1688 PF02569 Pantoate-beta-alanine ligase CH46_1689 PF02548 Ketopantoate hydroxymethyltransferase CH46_169 PF00691 OmpA family CH46_169 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH46_1690 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CH46_1691 PF12626 Polymerase A arginine-rich C-terminus CH46_1691 PF01743 Poly A polymerase head domain CH46_1691 PF12627 Probable RNA and SrmB- binding site of polymerase A CH46_1692 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH46_1693 PF01258 Prokaryotic dksA/traR C4-type zinc finger CH46_1694 PF03749 Sugar fermentation stimulation protein RE domain CH46_1694 PF17746 SfsA N-terminal OB domain CH46_1695 PF02834 LigT like Phosphoesterase CH46_1696 PF00270 DEAD/DEAH box helicase CH46_1696 PF04408 Helicase associated domain (HA2) CH46_1696 PF08482 ATP-dependent helicase C-terminal CH46_1696 PF00271 Helicase conserved C-terminal domain CH46_1697 PF14814 Bifunctional transglycosylase second domain CH46_1697 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal CH46_1697 PF00912 Transglycosylase CH46_1697 PF00905 Penicillin binding protein transpeptidase domain CH46_1698 PF00005 ABC transporter CH46_1699 PF01497 Periplasmic binding protein CH46_170 PF01618 MotA/TolQ/ExbB proton channel family CH46_1700 PF01032 FecCD transport family CH46_1701 PF00202 Aminotransferase class-III CH46_1702 PF00654 Voltage gated chloride channel CH46_1703 PF01521 Iron-sulphur cluster biosynthesis CH46_1704 PF03458 UPF0126 domain CH46_1705 PF01497 Periplasmic binding protein CH46_1706 PF01048 Phosphorylase superfamily CH46_1707 PF13286 Phosphohydrolase-associated domain CH46_1707 PF01966 HD domain CH46_1708 PF00595 PDZ domain CH46_1709 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_1709 PF00512 His Kinase A (phospho-acceptor) domain CH46_1709 PF01627 Hpt domain CH46_1709 PF00072 Response regulator receiver domain CH46_1709 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH46_1709 PF00672 HAMP domain CH46_171 PF04545 Sigma-70, region 4 CH46_171 PF04542 Sigma-70 region 2 CH46_1710 PF04607 Region found in RelA / SpoT proteins CH46_1710 PF02824 TGS domain CH46_1710 PF13291 ACT domain CH46_1711 PF03819 MazG nucleotide pyrophosphohydrolase domain CH46_1712 PF00117 Glutamine amidotransferase class-I CH46_1712 PF06418 CTP synthase N-terminus CH46_1713 PF00113 Enolase, C-terminal TIM barrel domain CH46_1713 PF03952 Enolase, N-terminal domain CH46_1714 PF00080 Copper/zinc superoxide dismutase (SODC) CH46_1715 PF04055 Radical SAM superfamily CH46_1716 PF01242 6-pyruvoyl tetrahydropterin synthase CH46_1717 PF00667 FAD binding domain CH46_1717 PF00258 Flavodoxin CH46_1717 PF00175 Oxidoreductase NAD-binding domain CH46_1718 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH46_1718 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH46_1719 PF01507 Phosphoadenosine phosphosulfate reductase family CH46_1720 PF01695 IstB-like ATP binding protein CH46_1723 PF02796 Helix-turn-helix domain of resolvase CH46_1723 PF00665 Integrase core domain CH46_1724 PF01507 Phosphoadenosine phosphosulfate reductase family CH46_1728 PF10414 Sirohaem synthase dimerisation region CH46_1728 PF14824 Sirohaem biosynthesis protein central CH46_1728 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH46_1729 PF01507 Phosphoadenosine phosphosulfate reductase family CH46_1730 PF00009 Elongation factor Tu GTP binding domain CH46_1732 PF12084 Protein of unknown function (DUF3561) CH46_1733 PF04977 Septum formation initiator CH46_1734 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CH46_1735 PF02542 YgbB family CH46_1736 PF01142 tRNA pseudouridine synthase D (TruD) CH46_1737 PF01975 Survival protein SurE CH46_1739 PF01551 Peptidase family M23 CH46_1739 PF01476 LysM domain CH46_1740 PF04542 Sigma-70 region 2 CH46_1740 PF04539 Sigma-70 region 3 CH46_1740 PF04545 Sigma-70, region 4 CH46_1740 PF00140 Sigma-70 factor, region 1.2 CH46_1741 PF01624 MutS domain I CH46_1741 PF05188 MutS domain II CH46_1741 PF05192 MutS domain III CH46_1741 PF00488 MutS domain V CH46_1741 PF05190 MutS family domain IV CH46_1742 PF02502 Ribose/Galactose Isomerase CH46_1743 PF00107 Zinc-binding dehydrogenase CH46_1743 PF08240 Alcohol dehydrogenase GroES-like domain CH46_1745 PF02733 Dak1 domain CH46_1746 PF02734 DAK2 domain CH46_1747 PF04198 Putative sugar-binding domain CH46_1747 PF13936 Helix-turn-helix domain CH46_1748 PF02040 Arsenical pump membrane protein CH46_1749 PF01022 Bacterial regulatory protein, arsR family CH46_1752 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH46_1753 PF00034 Cytochrome c CH46_1753 PF14376 Haem-binding domain CH46_1753 PF03150 Di-haem cytochrome c peroxidase CH46_1755 PF07715 TonB-dependent Receptor Plug Domain CH46_1755 PF00593 TonB dependent receptor CH46_1758 PF00557 Metallopeptidase family M24 CH46_176 PF07196 Flagellin hook IN motif CH46_176 PF02465 Flagellar hook-associated protein 2 N-terminus CH46_176 PF07195 Flagellar hook-associated protein 2 C-terminus CH46_1760 PF05681 Fumarate hydratase (Fumerase) CH46_1760 PF05683 Fumarase C-terminus CH46_1761 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH46_1761 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH46_1762 PF01261 Xylose isomerase-like TIM barrel CH46_1763 PF02653 Branched-chain amino acid transport system / permease component CH46_1764 PF02653 Branched-chain amino acid transport system / permease component CH46_1765 PF00005 ABC transporter CH46_1766 PF01797 Transposase IS200 like CH46_1768 PF00455 DeoR C terminal sensor domain CH46_1768 PF08220 DeoR-like helix-turn-helix domain CH46_1769 PF00596 Class II Aldolase and Adducin N-terminal domain CH46_177 PF00669 Bacterial flagellin N-terminal helical region CH46_177 PF00700 Bacterial flagellin C-terminal helical region CH46_1770 PF00384 Molybdopterin oxidoreductase CH46_1770 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH46_1770 PF01568 Molydopterin dinucleotide binding domain CH46_1771 PF13247 4Fe-4S dicluster domain CH46_1771 PF12800 4Fe-4S binding domain CH46_1772 PF04976 DMSO reductase anchor subunit (DmsC) CH46_1773 PF02613 Nitrate reductase delta subunit CH46_1774 PF01292 Prokaryotic cytochrome b561 CH46_1775 PF07361 Cytochrome b562 CH46_1776 PF00141 Peroxidase CH46_1779 PF00005 ABC transporter CH46_178 PF00669 Bacterial flagellin N-terminal helical region CH46_178 PF00700 Bacterial flagellin C-terminal helical region CH46_1780 PF02653 Branched-chain amino acid transport system / permease component CH46_1781 PF00456 Transketolase, thiamine diphosphate binding domain CH46_1782 PF02780 Transketolase, C-terminal domain CH46_1782 PF02779 Transketolase, pyrimidine binding domain CH46_1783 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH46_1783 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH46_1786 PF07690 Major Facilitator Superfamily CH46_1787 PF02464 Competence-damaged protein CH46_1788 PF00154 recA bacterial DNA recombination protein CH46_1789 PF02631 RecX family CH46_179 PF00700 Bacterial flagellin C-terminal helical region CH46_179 PF00669 Bacterial flagellin N-terminal helical region CH46_1790 PF02272 DHHA1 domain CH46_1790 PF01411 tRNA synthetases class II (A) CH46_1790 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH46_1791 PF02599 Global regulator protein family CH46_1796 PF13419 Haloacid dehalogenase-like hydrolase CH46_1797 PF09335 SNARE associated Golgi protein CH46_1798 PF04262 Glutamate-cysteine ligase CH46_1799 PF02664 S-Ribosylhomocysteinase (LuxS) CH46_18 PF03006 Haemolysin-III related CH46_180 PF18500 CadC C-terminal domain 1 CH46_180 PF00486 Transcriptional regulatory protein, C terminal CH46_1800 PF01797 Transposase IS200 like CH46_1801 PF01595 Cyclin M transmembrane N-terminal domain CH46_1801 PF00571 CBS domain CH46_1801 PF03471 Transporter associated domain CH46_1802 PF01578 Cytochrome C assembly protein CH46_1803 PF02881 SRP54-type protein, helical bundle domain CH46_1803 PF00448 SRP54-type protein, GTPase domain CH46_1803 PF02978 Signal peptide binding domain CH46_1804 PF00886 Ribosomal protein S16 CH46_1805 PF05239 PRC-barrel domain CH46_1805 PF01782 RimM N-terminal domain CH46_1806 PF01746 tRNA (Guanine-1)-methyltransferase CH46_1807 PF01245 Ribosomal protein L19 CH46_1808 PF01797 Transposase IS200 like CH46_1809 PF04338 Protein of unknown function, DUF481 CH46_1810 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH46_1811 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH46_1812 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH46_1813 PF04397 LytTr DNA-binding domain CH46_1813 PF00072 Response regulator receiver domain CH46_1814 PF00793 DAHP synthetase I family CH46_1815 PF02153 Prephenate dehydrogenase CH46_1815 PF01817 Chorismate mutase type II CH46_1816 PF00800 Prephenate dehydratase CH46_1816 PF01817 Chorismate mutase type II CH46_1817 PF01695 IstB-like ATP binding protein CH46_1818 PF01695 IstB-like ATP binding protein CH46_1819 PF02796 Helix-turn-helix domain of resolvase CH46_1819 PF00665 Integrase core domain CH46_1820 PF01817 Chorismate mutase type II CH46_1820 PF00800 Prephenate dehydratase CH46_1821 PF01797 Transposase IS200 like CH46_1822 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH46_1823 PF13525 Outer membrane lipoprotein CH46_1824 PF00849 RNA pseudouridylate synthase CH46_1824 PF01479 S4 domain CH46_1826 PF10431 C-terminal, D2-small domain, of ClpB protein CH46_1826 PF02861 Clp amino terminal domain, pathogenicity island component CH46_1826 PF17871 AAA lid domain CH46_1826 PF00004 ATPase family associated with various cellular activities (AAA) CH46_1826 PF07724 AAA domain (Cdc48 subfamily) CH46_1833 PF10043 Predicted periplasmic lipoprotein (DUF2279) CH46_1834 PF13091 PLD-like domain CH46_1835 PF13607 Succinyl-CoA ligase like flavodoxin domain CH46_1835 PF13380 CoA binding domain CH46_1835 PF00583 Acetyltransferase (GNAT) family CH46_1837 PF00085 Thioredoxin CH46_1838 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH46_1838 PF00588 SpoU rRNA Methylase family CH46_1839 PF07690 Major Facilitator Superfamily CH46_184 PF00460 Flagella basal body rod protein CH46_184 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH46_1840 PF00529 HlyD membrane-fusion protein of T1SS CH46_1840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH46_1841 PF01047 MarR family CH46_1842 PF05437 Branched-chain amino acid transport protein (AzlD) CH46_1843 PF03591 AzlC protein CH46_1844 PF07690 Major Facilitator Superfamily CH46_1846 PF01425 Amidase CH46_1849 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH46_1850 PF00528 Binding-protein-dependent transport system inner membrane component CH46_1852 PF00005 ABC transporter CH46_1853 PF00266 Aminotransferase class-V CH46_1854 PF01695 IstB-like ATP binding protein CH46_1857 PF00266 Aminotransferase class-V CH46_1858 PF07687 Peptidase dimerisation domain CH46_1858 PF01546 Peptidase family M20/M25/M40 CH46_1859 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH46_1859 PF08479 POTRA domain, ShlB-type CH46_186 PF02119 Flagellar P-ring protein CH46_1860 PF05860 haemagglutination activity domain CH46_1861 PF18254 HMW1 domain 2 CH46_1861 PF18071 HMW1C N-terminal CH46_1863 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH46_1863 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH46_1863 PF09317 Domain of unknown function (DUF1974) CH46_1864 PF13580 SIS domain CH46_1865 PF03734 L,D-transpeptidase catalytic domain CH46_1866 PF13230 Glutamine amidotransferases class-II CH46_1867 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CH46_1867 PF11973 NQRA C-terminal domain CH46_1868 PF03116 NQR2, RnfD, RnfE family CH46_1869 PF04205 FMN-binding domain CH46_187 PF02107 Flagellar L-ring protein CH46_1870 PF02508 Rnf-Nqr subunit, membrane protein CH46_1871 PF02508 Rnf-Nqr subunit, membrane protein CH46_1872 PF00175 Oxidoreductase NAD-binding domain CH46_1872 PF00970 Oxidoreductase FAD-binding domain CH46_1872 PF00111 2Fe-2S iron-sulfur cluster binding domain CH46_1873 PF02424 ApbE family CH46_1875 PF03009 Glycerophosphoryl diester phosphodiesterase family CH46_1876 PF00817 impB/mucB/samB family CH46_1876 PF11798 IMS family HHH motif CH46_1876 PF11799 impB/mucB/samB family C-terminal domain CH46_1877 PF07687 Peptidase dimerisation domain CH46_1877 PF01546 Peptidase family M20/M25/M40 CH46_188 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH46_188 PF00460 Flagella basal body rod protein CH46_1881 PF00156 Phosphoribosyl transferase domain CH46_1883 PF07417 Sigma factor-binding transcriptional regulator Crl CH46_1884 PF00696 Amino acid kinase family CH46_1884 PF01472 PUA domain CH46_1885 PF00171 Aldehyde dehydrogenase family CH46_1886 PF07317 Flagellar regulator YcgR CH46_1886 PF07238 PilZ domain CH46_1888 PF08241 Methyltransferase domain CH46_189 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH46_189 PF00460 Flagella basal body rod protein CH46_1890 PF01202 Shikimate kinase CH46_1891 PF06865 Pyrimidine/purine nucleoside phosphorylase CH46_1892 PF04381 Putative exonuclease, RdgC CH46_1893 PF00480 ROK family CH46_1894 PF02796 Helix-turn-helix domain of resolvase CH46_1894 PF00665 Integrase core domain CH46_1895 PF01695 IstB-like ATP binding protein CH46_1896 PF13476 AAA domain CH46_1897 PF00149 Calcineurin-like phosphoesterase CH46_1897 PF12320 Type 5 capsule protein repressor C-terminal domain CH46_1898 PF00486 Transcriptional regulatory protein, C terminal CH46_1898 PF00072 Response regulator receiver domain CH46_1899 PF11808 Phosphate regulon sensor protein PhoR CH46_1899 PF00989 PAS fold CH46_1899 PF00512 His Kinase A (phospho-acceptor) domain CH46_1899 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_190 PF01797 Transposase IS200 like CH46_1900 PF12849 PBP superfamily domain CH46_1901 PF05525 Branched-chain amino acid transport protein CH46_1902 PF00324 Amino acid permease CH46_1903 PF00128 Alpha amylase, catalytic domain CH46_1903 PF02903 Alpha amylase, N-terminal ig-like domain CH46_1907 PF01797 Transposase IS200 like CH46_1908 PF10417 C-terminal domain of 1-Cys peroxiredoxin CH46_1908 PF00578 AhpC/TSA family CH46_1909 PF04336 Acyl carrier protein phosphodiesterase CH46_1910 PF02547 Queuosine biosynthesis protein CH46_1911 PF01702 Queuine tRNA-ribosyltransferase CH46_1912 PF02699 Preprotein translocase subunit CH46_1913 PF13721 SecD export protein N-terminal TM region CH46_1913 PF02355 Protein export membrane protein CH46_1913 PF07549 SecD/SecF GG Motif CH46_1914 PF02355 Protein export membrane protein CH46_1914 PF07549 SecD/SecF GG Motif CH46_1917 PF03477 ATP cone domain CH46_1918 PF01872 RibD C-terminal domain CH46_1918 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH46_1919 PF00885 6,7-dimethyl-8-ribityllumazine synthase CH46_192 PF07559 Flagellar basal body protein FlaE CH46_192 PF00460 Flagella basal body rod protein CH46_192 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH46_1920 PF01029 NusB family CH46_1921 PF00586 AIR synthase related protein, N-terminal domain CH46_1921 PF02769 AIR synthase related protein, C-terminal domain CH46_1922 PF04608 Phosphatidylglycerophosphatase A CH46_1923 PF01797 Transposase IS200 like CH46_1924 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CH46_1924 PF02779 Transketolase, pyrimidine binding domain CH46_1924 PF02780 Transketolase, C-terminal domain CH46_1925 PF00348 Polyprenyl synthetase CH46_1926 PF02609 Exonuclease VII small subunit CH46_1927 PF02568 Thiamine biosynthesis protein (ThiI) CH46_1927 PF02926 THUMP domain CH46_1928 PF01965 DJ-1/PfpI family CH46_1929 PF08546 Ketopantoate reductase PanE/ApbA C terminal CH46_1929 PF02558 Ketopantoate reductase PanE/ApbA CH46_193 PF03963 Flagellar hook capping protein - N-terminal region CH46_193 PF13860 FlgD Ig-like domain CH46_193 PF13861 FlgD Tudor-like domain CH46_1930 PF04461 Protein of unknown function (DUF520) CH46_1931 PF07690 Major Facilitator Superfamily CH46_1932 PF01040 UbiA prenyltransferase family CH46_1933 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CH46_1934 PF00510 Cytochrome c oxidase subunit III CH46_1935 PF00115 Cytochrome C and Quinol oxidase polypeptide I CH46_1936 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CH46_1936 PF06481 COX Aromatic Rich Motif CH46_1937 PF03502 Nucleoside-specific channel-forming protein, Tsx CH46_1938 PF07690 Major Facilitator Superfamily CH46_1939 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH46_1939 PF03923 Uncharacterized lipoprotein CH46_194 PF00460 Flagella basal body rod protein CH46_194 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH46_1940 PF01722 BolA-like protein CH46_1942 PF05697 Bacterial trigger factor protein (TF) CH46_1942 PF05698 Bacterial trigger factor protein (TF) C-terminus CH46_1942 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH46_1943 PF00574 Clp protease CH46_1944 PF06689 ClpX C4-type zinc finger CH46_1944 PF10431 C-terminal, D2-small domain, of ClpB protein CH46_1944 PF07724 AAA domain (Cdc48 subfamily) CH46_1945 PF02190 ATP-dependent protease La (LON) substrate-binding domain CH46_1945 PF00004 ATPase family associated with various cellular activities (AAA) CH46_1945 PF05362 Lon protease (S16) C-terminal proteolytic domain CH46_1946 PF00216 Bacterial DNA-binding protein CH46_1947 PF13145 PPIC-type PPIASE domain CH46_195 PF00460 Flagella basal body rod protein CH46_1950 PF06508 Queuosine biosynthesis protein QueC CH46_1951 PF12793 Sugar transport-related sRNA regulator N-term CH46_1951 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH46_1953 PF00291 Pyridoxal-phosphate dependent enzyme CH46_1954 PF13404 AsnC-type helix-turn-helix domain CH46_1954 PF01037 Lrp/AsnC ligand binding domain CH46_1955 PF00664 ABC transporter transmembrane region CH46_1955 PF00005 ABC transporter CH46_1956 PF00664 ABC transporter transmembrane region CH46_1956 PF00005 ABC transporter CH46_1957 PF00543 Nitrogen regulatory protein P-II CH46_1958 PF00909 Ammonium Transporter Family CH46_196 PF13144 Chaperone for flagella basal body P-ring formation CH46_1960 PF09619 Type III secretion system lipoprotein chaperone (YscW) CH46_1961 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH46_1962 PF05321 Haemolysin expression modulating protein CH46_1963 PF10757 Biofilm formation regulator YbaJ CH46_1965 PF00444 Ribosomal protein L36 CH46_1966 PF01197 Ribosomal protein L31 CH46_1967 PF00873 AcrB/AcrD/AcrF family CH46_1968 PF00529 HlyD membrane-fusion protein of T1SS CH46_1968 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH46_1969 PF08361 MAATS-type transcriptional repressor, C-terminal region CH46_1969 PF00440 Bacterial regulatory proteins, tetR family CH46_1970 PF02635 DsrE/DsrF-like family CH46_1971 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH46_1971 PF00924 Mechanosensitive ion channel CH46_1971 PF12795 Mechanosensitive ion channel porin domain CH46_1973 PF04304 Protein of unknown function (DUF454) CH46_1974 PF00665 Integrase core domain CH46_1974 PF02796 Helix-turn-helix domain of resolvase CH46_1975 PF01695 IstB-like ATP binding protein CH46_1976 PF00156 Phosphoribosyl transferase domain CH46_1977 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CH46_1977 PF12169 DNA polymerase III subunits gamma and tau domain III CH46_1977 PF12170 DNA polymerase III tau subunit V interacting with alpha CH46_1978 PF02575 YbaB/EbfC DNA-binding family CH46_1979 PF13662 Toprim domain CH46_1979 PF02132 RecR protein CH46_1980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_1980 PF00183 Hsp90 protein CH46_1981 PF05191 Adenylate kinase, active site lid CH46_1982 PF00762 Ferrochelatase CH46_1983 PF00970 Oxidoreductase FAD-binding domain CH46_1983 PF00111 2Fe-2S iron-sulfur cluster binding domain CH46_1983 PF00175 Oxidoreductase NAD-binding domain CH46_1984 PF00483 Nucleotidyl transferase CH46_1985 PF16363 GDP-mannose 4,6 dehydratase CH46_1986 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH46_1987 PF01370 NAD dependent epimerase/dehydratase family CH46_1995 PF00534 Glycosyl transferases group 1 CH46_1995 PF13439 Glycosyltransferase Family 4 CH46_1996 PF16363 GDP-mannose 4,6 dehydratase CH46_1997 PF16363 GDP-mannose 4,6 dehydratase CH46_2 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_2 PF03466 LysR substrate binding domain CH46_20 PF01571 Aminomethyltransferase folate-binding domain CH46_200 PF18269 T3SS EscN ATPase C-terminal domain CH46_200 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH46_2000 PF01050 Mannose-6-phosphate isomerase CH46_2000 PF00483 Nucleotidyl transferase CH46_2001 PF00535 Glycosyl transferase family 2 CH46_2002 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH46_2002 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH46_2002 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH46_2002 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH46_2003 PF02706 Chain length determinant protein CH46_2004 PF00294 pfkB family carbohydrate kinase CH46_2005 PF00999 Sodium/hydrogen exchanger family CH46_2005 PF02254 TrkA-N domain CH46_2006 PF07690 Major Facilitator Superfamily CH46_2007 PF00149 Calcineurin-like phosphoesterase CH46_2007 PF02872 5'-nucleotidase, C-terminal domain CH46_2008 PF00149 Calcineurin-like phosphoesterase CH46_2008 PF02872 5'-nucleotidase, C-terminal domain CH46_2009 PF00149 Calcineurin-like phosphoesterase CH46_2009 PF02872 5'-nucleotidase, C-terminal domain CH46_2012 PF04073 Aminoacyl-tRNA editing domain CH46_2013 PF01963 TraB family CH46_2014 PF00403 Heavy-metal-associated domain CH46_2015 PF13411 MerR HTH family regulatory protein CH46_2016 PF01957 NfeD-like C-terminal, partner-binding CH46_2017 PF16200 C-terminal region of band_7 CH46_2017 PF01145 SPFH domain / Band 7 family CH46_2018 PF00085 Thioredoxin CH46_2019 PF00106 short chain dehydrogenase CH46_2020 PF13472 GDSL-like Lipase/Acylhydrolase family CH46_2021 PF00005 ABC transporter CH46_2023 PF02222 ATP-grasp domain CH46_2023 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CH46_2024 PF00731 AIR carboxylase CH46_2025 PF00149 Calcineurin-like phosphoesterase CH46_2026 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH46_2027 PF09190 DALR domain CH46_2027 PF01406 tRNA synthetases class I (C) catalytic domain CH46_2029 PF01797 Transposase IS200 like CH46_203 PF01514 Secretory protein of YscJ/FliF family CH46_203 PF08345 Flagellar M-ring protein C-terminal CH46_2030 PF00308 Bacterial dnaA protein CH46_2031 PF03960 ArsC family CH46_2032 PF01435 Peptidase family M48 CH46_2032 PF07720 Tetratricopeptide repeat CH46_2033 PF01594 AI-2E family transporter CH46_2036 PF00578 AhpC/TSA family CH46_2037 PF01842 ACT domain CH46_2038 PF00701 Dihydrodipicolinate synthetase family CH46_2039 PF06804 NlpB/DapX lipoprotein CH46_204 PF02049 Flagellar hook-basal body complex protein FliE CH46_2040 PF01797 Transposase IS200 like CH46_2041 PF01259 SAICAR synthetase CH46_2042 PF04228 Putative neutral zinc metallopeptidase CH46_2043 PF04284 Protein of unknown function (DUF441) CH46_2044 PF13718 GNAT acetyltransferase 2 CH46_2044 PF08351 Domain of unknown function (DUF1726) CH46_2044 PF17176 tRNA-binding domain CH46_2044 PF05127 Helicase CH46_2045 PF13980 Uncharacterised protein family (UPF0370) CH46_2046 PF02557 D-alanyl-D-alanine carboxypeptidase CH46_2047 PF07687 Peptidase dimerisation domain CH46_2047 PF01546 Peptidase family M20/M25/M40 CH46_2048 PF03960 ArsC family CH46_205 PF02954 Bacterial regulatory protein, Fis family CH46_205 PF00158 Sigma-54 interaction domain CH46_205 PF00072 Response regulator receiver domain CH46_2051 PF00528 Binding-protein-dependent transport system inner membrane component CH46_2052 PF08402 TOBE domain CH46_2052 PF00005 ABC transporter CH46_2053 PF00884 Sulfatase CH46_2054 PF13186 Iron-sulfur cluster-binding domain CH46_2054 PF04055 Radical SAM superfamily CH46_2055 PF04307 LexA-binding, inner membrane-associated putative hydrolase CH46_2057 PF00873 AcrB/AcrD/AcrF family CH46_2059 PF00072 Response regulator receiver domain CH46_2059 PF00196 Bacterial regulatory proteins, luxR family CH46_2060 PF00037 4Fe-4S binding domain CH46_2060 PF12800 4Fe-4S binding domain CH46_2060 PF13187 4Fe-4S dicluster domain CH46_2061 PF03927 NapD protein CH46_2062 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH46_2062 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH46_2062 PF01568 Molydopterin dinucleotide binding domain CH46_2062 PF00384 Molybdopterin oxidoreductase CH46_2063 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CH46_2064 PF03264 NapC/NirT cytochrome c family, N-terminal region CH46_2065 PF00293 NUDIX domain CH46_2066 PF01515 Phosphate acetyl/butaryl transferase CH46_2066 PF03949 Malic enzyme, NAD binding domain CH46_2066 PF00390 Malic enzyme, N-terminal domain CH46_2067 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CH46_2068 PF01218 Coproporphyrinogen III oxidase CH46_2069 PF00583 Acetyltransferase (GNAT) family CH46_207 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH46_2072 PF03797 Autotransporter beta-domain CH46_2072 PF13018 Extended Signal Peptide of Type V secretion system CH46_2072 PF03212 Pertactin CH46_2072 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH46_2073 PF04076 Bacterial OB fold (BOF) protein CH46_2074 PF06572 Protein of unknown function (DUF1131) CH46_2075 PF04261 Dyp-type peroxidase family CH46_2076 PF00701 Dihydrodipicolinate synthetase family CH46_2077 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CH46_2078 PF12468 Type III secretion system leucine rich repeat protein CH46_2079 PF00480 ROK family CH46_208 PF00813 FliP family CH46_2080 PF04074 YhcH/YjgK/YiaL CH46_2081 PF01380 SIS domain CH46_2081 PF01418 Helix-turn-helix domain, rpiR family CH46_2082 PF07690 Major Facilitator Superfamily CH46_2084 PF00528 Binding-protein-dependent transport system inner membrane component CH46_2085 PF00528 Binding-protein-dependent transport system inner membrane component CH46_2086 PF00005 ABC transporter CH46_2087 PF00291 Pyridoxal-phosphate dependent enzyme CH46_2089 PF00486 Transcriptional regulatory protein, C terminal CH46_2089 PF00072 Response regulator receiver domain CH46_209 PF01313 Bacterial export proteins, family 3 CH46_2090 PF00512 His Kinase A (phospho-acceptor) domain CH46_2090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_2090 PF00672 HAMP domain CH46_2092 PF00155 Aminotransferase class I and II CH46_2094 PF05195 Aminopeptidase P, N-terminal domain CH46_2094 PF00557 Metallopeptidase family M24 CH46_2096 PF00474 Sodium:solute symporter family CH46_2097 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH46_2097 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH46_2098 PF02687 FtsX-like permease family CH46_2098 PF12704 MacB-like periplasmic core domain CH46_2098 PF00005 ABC transporter CH46_2099 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH46_21 PF03937 Flavinator of succinate dehydrogenase CH46_210 PF01311 Bacterial export proteins, family 1 CH46_2102 PF16527 Two-component sensor protein CpxA, periplasmic domain CH46_2102 PF00672 HAMP domain CH46_2102 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_2102 PF00512 His Kinase A (phospho-acceptor) domain CH46_2103 PF01695 IstB-like ATP binding protein CH46_2104 PF00665 Integrase core domain CH46_2104 PF02796 Helix-turn-helix domain of resolvase CH46_2106 PF01797 Transposase IS200 like CH46_2107 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH46_2108 PF05524 PEP-utilising enzyme, N-terminal CH46_2108 PF00391 PEP-utilising enzyme, mobile domain CH46_2108 PF02896 PEP-utilising enzyme, TIM barrel domain CH46_2109 PF00381 PTS HPr component phosphorylation site CH46_211 PF01312 FlhB HrpN YscU SpaS Family CH46_2110 PF00291 Pyridoxal-phosphate dependent enzyme CH46_2112 PF04354 ZipA, C-terminal FtsZ-binding domain CH46_2113 PF12826 Helix-hairpin-helix motif CH46_2113 PF03120 NAD-dependent DNA ligase OB-fold domain CH46_2113 PF00533 BRCA1 C Terminus (BRCT) domain CH46_2113 PF01653 NAD-dependent DNA ligase adenylation domain CH46_2113 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CH46_2114 PF12843 Putative quorum-sensing-regulated virulence factor CH46_2119 PF01797 Transposase IS200 like CH46_212 PF00771 FHIPEP family CH46_2120 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH46_2124 PF01773 Na+ dependent nucleoside transporter N-terminus CH46_2124 PF07670 Nucleoside recognition CH46_2124 PF07662 Na+ dependent nucleoside transporter C-terminus CH46_2125 PF01566 Natural resistance-associated macrophage protein CH46_2127 PF00248 Aldo/keto reductase family CH46_2128 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_2128 PF03466 LysR substrate binding domain CH46_213 PF00771 FHIPEP family CH46_2130 PF02685 Glucokinase CH46_2131 PF07350 Protein of unknown function (DUF1479) CH46_2132 PF00155 Aminotransferase class I and II CH46_2133 PF01292 Prokaryotic cytochrome b561 CH46_2135 PF03783 Curli production assembly/transport component CsgG CH46_2137 PF05643 Putative bacterial lipoprotein (DUF799) CH46_2139 PF02613 Nitrate reductase delta subunit CH46_2140 PF04976 DMSO reductase anchor subunit (DmsC) CH46_2141 PF12800 4Fe-4S binding domain CH46_2141 PF13247 4Fe-4S dicluster domain CH46_2142 PF00384 Molybdopterin oxidoreductase CH46_2142 PF01568 Molydopterin dinucleotide binding domain CH46_2142 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH46_2144 PF05638 Type VI secretion system effector, Hcp CH46_2146 PF00005 ABC transporter CH46_2147 PF00528 Binding-protein-dependent transport system inner membrane component CH46_2149 PF13406 Transglycosylase SLT domain CH46_2159 PF07724 AAA domain (Cdc48 subfamily) CH46_2159 PF00004 ATPase family associated with various cellular activities (AAA) CH46_2159 PF10431 C-terminal, D2-small domain, of ClpB protein CH46_2159 PF17871 AAA lid domain CH46_216 PF01497 Periplasmic binding protein CH46_2160 PF16970 Type-1 fimbrial protein, A CH46_2161 PF02753 Pili assembly chaperone PapD, C-terminal domain CH46_2161 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH46_2162 PF00577 Outer membrane usher protein CH46_2162 PF13954 PapC N-terminal domain CH46_2162 PF13953 PapC C-terminal domain CH46_2163 PF00872 Transposase, Mutator family CH46_2164 PF00577 Outer membrane usher protein CH46_2164 PF13954 PapC N-terminal domain CH46_2164 PF13953 PapC C-terminal domain CH46_217 PF09222 Fimbrial adhesin F17-AG, lectin domain CH46_217 PF00419 Fimbrial protein CH46_2172 PF00665 Integrase core domain CH46_2172 PF02796 Helix-turn-helix domain of resolvase CH46_2173 PF01695 IstB-like ATP binding protein CH46_2174 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CH46_2175 PF01648 4'-phosphopantetheinyl transferase superfamily CH46_2176 PF01797 Transposase IS200 like CH46_2177 PF12838 4Fe-4S dicluster domain CH46_2178 PF01380 SIS domain CH46_2178 PF01418 Helix-turn-helix domain, rpiR family CH46_2179 PF01380 SIS domain CH46_218 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH46_218 PF02753 Pili assembly chaperone PapD, C-terminal domain CH46_2181 PF14437 MafB19-like deaminase CH46_2182 PF01464 Transglycosylase SLT domain CH46_2182 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH46_2183 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CH46_2183 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CH46_2183 PF02769 AIR synthase related protein, C-terminal domain CH46_2187 PF01797 Transposase IS200 like CH46_2188 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_2188 PF00512 His Kinase A (phospho-acceptor) domain CH46_2189 PF13942 YfhG lipoprotein CH46_219 PF13954 PapC N-terminal domain CH46_219 PF13953 PapC C-terminal domain CH46_219 PF00577 Outer membrane usher protein CH46_2190 PF00158 Sigma-54 interaction domain CH46_2190 PF00072 Response regulator receiver domain CH46_2191 PF00795 Carbon-nitrogen hydrolase CH46_2191 PF02540 NAD synthase CH46_2192 PF00543 Nitrogen regulatory protein P-II CH46_2195 PF00175 Oxidoreductase NAD-binding domain CH46_2195 PF00970 Oxidoreductase FAD-binding domain CH46_2195 PF00042 Globin CH46_2196 PF00464 Serine hydroxymethyltransferase CH46_2197 PF13505 Outer membrane protein beta-barrel domain CH46_2198 PF00874 PRD domain CH46_2199 PF12832 MFS_1 like family CH46_22 PF00486 Transcriptional regulatory protein, C terminal CH46_22 PF00072 Response regulator receiver domain CH46_220 PF01797 Transposase IS200 like CH46_2200 PF06226 Protein of unknown function (DUF1007) CH46_2201 PF03824 High-affinity nickel-transport protein CH46_2202 PF01797 Transposase IS200 like CH46_2203 PF00459 Inositol monophosphatase family CH46_2204 PF00588 SpoU rRNA Methylase family CH46_2205 PF02082 Transcriptional regulator CH46_2206 PF00266 Aminotransferase class-V CH46_2207 PF01592 NifU-like N terminal domain CH46_2208 PF01521 Iron-sulphur cluster biosynthesis CH46_2209 PF07743 HSCB C-terminal oligomerisation domain CH46_2209 PF00226 DnaJ domain CH46_221 PF01797 Transposase IS200 like CH46_2210 PF00012 Hsp70 protein CH46_2211 PF00111 2Fe-2S iron-sulfur cluster binding domain CH46_2212 PF04384 Iron-sulphur cluster assembly CH46_2213 PF12404 Peptidase CH46_2213 PF00883 Cytosol aminopeptidase family, catalytic domain CH46_2214 PF07179 SseB protein N-terminal domain CH46_2214 PF14581 SseB protein C-terminal domain CH46_2216 PF03212 Pertactin CH46_2216 PF03797 Autotransporter beta-domain CH46_2216 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH46_2217 PF03212 Pertactin CH46_2217 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH46_2217 PF03797 Autotransporter beta-domain CH46_2219 PF00334 Nucleoside diphosphate kinase CH46_2220 PF04055 Radical SAM superfamily CH46_2222 PF13464 Domain of unknown function (DUF4115) CH46_2223 PF04551 GcpE protein CH46_2224 PF13393 Histidyl-tRNA synthetase CH46_2224 PF03129 Anticodon binding domain CH46_2225 PF09976 Tetratricopeptide repeat-like domain CH46_2226 PF13360 PQQ-like domain CH46_2227 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CH46_2227 PF01926 50S ribosome-binding GTPase CH46_2229 PF07191 zinc-ribbons CH46_2230 PF13742 OB-fold nucleic acid binding domain CH46_2230 PF02601 Exonuclease VII, large subunit CH46_2231 PF00571 CBS domain CH46_2231 PF00478 IMP dehydrogenase / GMP reductase domain CH46_2232 PF00958 GMP synthase C terminal domain CH46_2232 PF02540 NAD synthase CH46_2232 PF00117 Glutamine amidotransferase class-I CH46_2233 PF01797 Transposase IS200 like CH46_2234 PF05638 Type VI secretion system effector, Hcp CH46_224 PF13629 Pilus formation protein N terminal region CH46_224 PF00263 Bacterial type II and III secretion system protein CH46_224 PF04972 BON domain CH46_2240 PF00872 Transposase, Mutator family CH46_2241 PF00872 Transposase, Mutator family CH46_2244 PF08543 Phosphomethylpyrimidine kinase CH46_2248 PF00781 Diacylglycerol kinase catalytic domain CH46_225 PF04972 BON domain CH46_225 PF13629 Pilus formation protein N terminal region CH46_225 PF00263 Bacterial type II and III secretion system protein CH46_2250 PF07411 Domain of unknown function (DUF1508) CH46_2251 PF00072 Response regulator receiver domain CH46_2251 PF00486 Transcriptional regulatory protein, C terminal CH46_2252 PF00672 HAMP domain CH46_2252 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_2252 PF00512 His Kinase A (phospho-acceptor) domain CH46_2253 PF07690 Major Facilitator Superfamily CH46_2254 PF00873 AcrB/AcrD/AcrF family CH46_2255 PF00873 AcrB/AcrD/AcrF family CH46_2256 PF13533 Biotin-lipoyl like CH46_2257 PF00005 ABC transporter CH46_2257 PF08402 TOBE domain CH46_2258 PF00392 Bacterial regulatory proteins, gntR family CH46_2258 PF00155 Aminotransferase class I and II CH46_2259 PF00202 Aminotransferase class-III CH46_2261 PF00528 Binding-protein-dependent transport system inner membrane component CH46_2262 PF00528 Binding-protein-dependent transport system inner membrane component CH46_2263 PF00012 Hsp70 protein CH46_2264 PF01769 Divalent cation transporter CH46_2264 PF00571 CBS domain CH46_2264 PF03448 MgtE intracellular N domain CH46_2265 PF02541 Ppx/GppA phosphatase family CH46_2266 PF02503 Polyphosphate kinase middle domain CH46_2266 PF13090 Polyphosphate kinase C-terminal domain 2 CH46_2266 PF17941 Polyphosphate kinase C-terminal domain 1 CH46_2266 PF13089 Polyphosphate kinase N-terminal domain CH46_2267 PF00528 Binding-protein-dependent transport system inner membrane component CH46_2268 PF00528 Binding-protein-dependent transport system inner membrane component CH46_2269 PF00005 ABC transporter CH46_2272 PF13302 Acetyltransferase (GNAT) domain CH46_2273 PF00551 Formyl transferase CH46_2274 PF00586 AIR synthase related protein, N-terminal domain CH46_2274 PF02769 AIR synthase related protein, C-terminal domain CH46_2276 PF01797 Transposase IS200 like CH46_2278 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CH46_2278 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CH46_228 PF00437 Type II/IV secretion system protein CH46_2285 PF01066 CDP-alcohol phosphatidyltransferase CH46_2287 PF01553 Acyltransferase CH46_2288 PF12146 Serine aminopeptidase, S33 CH46_2288 PF12147 Putative methyltransferase CH46_2289 PF00782 Dual specificity phosphatase, catalytic domain CH46_2292 PF01695 IstB-like ATP binding protein CH46_2297 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_2297 PF03466 LysR substrate binding domain CH46_2298 PF00248 Aldo/keto reductase family CH46_2299 PF00248 Aldo/keto reductase family CH46_23 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_23 PF00512 His Kinase A (phospho-acceptor) domain CH46_23 PF00672 HAMP domain CH46_2305 PF00872 Transposase, Mutator family CH46_2306 PF08007 Cupin superfamily protein CH46_2308 PF03212 Pertactin CH46_2308 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH46_2308 PF03797 Autotransporter beta-domain CH46_2308 PF13018 Extended Signal Peptide of Type V secretion system CH46_2311 PF05638 Type VI secretion system effector, Hcp CH46_2315 PF13693 Winged helix-turn-helix DNA-binding CH46_2316 PF00905 Penicillin binding protein transpeptidase domain CH46_2316 PF00912 Transglycosylase CH46_2316 PF06832 Penicillin-Binding Protein C-terminus Family CH46_2317 PF00872 Transposase, Mutator family CH46_2318 PF00872 Transposase, Mutator family CH46_2319 PF03611 PTS system sugar-specific permease component CH46_2320 PF00293 NUDIX domain CH46_2321 PF12850 Calcineurin-like phosphoesterase superfamily domain CH46_2323 PF01370 NAD dependent epimerase/dehydratase family CH46_2323 PF08338 Domain of unknown function (DUF1731) CH46_2324 PF00005 ABC transporter CH46_2325 PF00528 Binding-protein-dependent transport system inner membrane component CH46_2326 PF00528 Binding-protein-dependent transport system inner membrane component CH46_2327 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH46_2328 PF02441 Flavoprotein CH46_2329 PF00156 Phosphoribosyl transferase domain CH46_2330 PF02674 Colicin V production protein CH46_2331 PF05036 Sporulation related domain CH46_2332 PF08245 Mur ligase middle domain CH46_2332 PF02875 Mur ligase family, glutamate ligase domain CH46_2333 PF17848 Acetyl-coA carboxylase zinc finger domain CH46_2333 PF01039 Carboxyl transferase domain CH46_2334 PF09335 SNARE associated Golgi protein CH46_2335 PF01416 tRNA pseudouridine synthase CH46_2336 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH46_2336 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH46_2337 PF01797 Transposase IS200 like CH46_2338 PF11890 Domain of unknown function (DUF3410) CH46_2338 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH46_2338 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH46_2340 PF00892 EamA-like transporter family CH46_2342 PF00419 Fimbrial protein CH46_2343 PF01177 Asp/Glu/Hydantoin racemase CH46_2344 PF02801 Beta-ketoacyl synthase, C-terminal domain CH46_2344 PF00109 Beta-ketoacyl synthase, N-terminal domain CH46_2345 PF01266 FAD dependent oxidoreductase CH46_2345 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CH46_2346 PF08891 YfcL protein CH46_2347 PF04315 Elongation factor P hydroxylase CH46_2348 PF01925 Sulfite exporter TauE/SafE CH46_2349 PF03411 Penicillin-insensitive murein endopeptidase CH46_235 PF02472 Biopolymer transport protein ExbD/TolR CH46_2350 PF01264 Chorismate synthase CH46_2351 PF05175 Methyltransferase small domain CH46_2352 PF01713 Smr domain CH46_2353 PF00300 Histidine phosphatase superfamily (branch 1) CH46_2354 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH46_2354 PF00378 Enoyl-CoA hydratase/isomerase CH46_2354 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH46_2355 PF00108 Thiolase, N-terminal domain CH46_2355 PF02803 Thiolase, C-terminal domain CH46_2356 PF04175 Protein of unknown function (DUF406) CH46_2357 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CH46_2358 PF04333 MlaA lipoprotein CH46_2359 PF03918 Cytochrome C biogenesis protein CH46_2360 PF03918 Cytochrome C biogenesis protein CH46_2361 PF08534 Redoxin CH46_2362 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CH46_2362 PF01578 Cytochrome C assembly protein CH46_2363 PF03100 CcmE CH46_2364 PF04995 Heme exporter protein D (CcmD) CH46_2365 PF01578 Cytochrome C assembly protein CH46_2366 PF03379 CcmB protein CH46_2367 PF00005 ABC transporter CH46_237 PF01618 MotA/TolQ/ExbB proton channel family CH46_2370 PF04011 LemA family CH46_2372 PF03831 PhnA domain CH46_2372 PF08274 PhnA Zinc-Ribbon CH46_2378 PF04717 Type VI secretion system, phage-baseplate injector CH46_238 PF01053 Cys/Met metabolism PLP-dependent enzyme CH46_2381 PF01695 IstB-like ATP binding protein CH46_2382 PF01695 IstB-like ATP binding protein CH46_2383 PF02796 Helix-turn-helix domain of resolvase CH46_2383 PF00665 Integrase core domain CH46_2384 PF11967 Recombination protein O N terminal CH46_2384 PF02565 Recombination protein O C terminal CH46_2385 PF07650 KH domain CH46_2385 PF01926 50S ribosome-binding GTPase CH46_2386 PF00035 Double-stranded RNA binding motif CH46_2386 PF14622 Ribonuclease-III-like CH46_2387 PF10502 Signal peptidase, peptidase S26 CH46_2388 PF00009 Elongation factor Tu GTP binding domain CH46_2388 PF00679 Elongation factor G C-terminus CH46_2388 PF03144 Elongation factor Tu domain 2 CH46_2388 PF06421 GTP-binding protein LepA C-terminus CH46_239 PF09335 SNARE associated Golgi protein CH46_2391 PF17188 MucB/RseB C-terminal domain CH46_2391 PF03888 MucB/RseB N-terminal domain CH46_2392 PF03872 Anti sigma-E protein RseA, N-terminal domain CH46_2392 PF03873 Anti sigma-E protein RseA, C-terminal domain CH46_2393 PF08281 Sigma-70, region 4 CH46_2393 PF04542 Sigma-70 region 2 CH46_2394 PF00890 FAD binding domain CH46_2394 PF02910 Fumarate reductase flavoprotein C-term CH46_2395 PF05175 Methyltransferase small domain CH46_2396 PF00270 DEAD/DEAH box helicase CH46_2396 PF00271 Helicase conserved C-terminal domain CH46_2398 PF12796 Ankyrin repeats (3 copies) CH46_24 PF06123 Inner membrane protein CreD CH46_240 PF06719 AraC-type transcriptional regulator N-terminus CH46_240 PF12833 Helix-turn-helix domain CH46_2401 PF01228 Glycine radical CH46_2402 PF03167 Uracil DNA glycosylase superfamily CH46_2403 PF01470 Pyroglutamyl peptidase CH46_2406 PF03746 LamB/YcsF family CH46_2407 PF02626 Carboxyltransferase domain, subdomain A and B CH46_2408 PF02682 Carboxyltransferase domain, subdomain C and D CH46_241 PF00465 Iron-containing alcohol dehydrogenase CH46_2410 PF01784 NIF3 (NGG1p interacting factor 3) CH46_2411 PF02112 cAMP phosphodiesterases class-II CH46_2412 PF00875 DNA photolyase CH46_2412 PF03441 FAD binding domain of DNA photolyase CH46_2413 PF08349 Protein of unknown function (DUF1722) CH46_2414 PF10725 Protein of unknown function (DUF2517) CH46_2415 PF03814 Potassium-transporting ATPase A subunit CH46_2417 PF02669 K+-transporting ATPase, c chain CH46_2418 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_2418 PF00512 His Kinase A (phospho-acceptor) domain CH46_2418 PF13492 GAF domain CH46_2418 PF02702 Osmosensitive K+ channel His kinase sensor domain CH46_2418 PF13493 Domain of unknown function (DUF4118) CH46_2419 PF00072 Response regulator receiver domain CH46_2419 PF00486 Transcriptional regulatory protein, C terminal CH46_242 PF00248 Aldo/keto reductase family CH46_2423 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH46_2423 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH46_2423 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH46_2423 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH46_2424 PF17206 SeqA protein N-terminal domain CH46_2424 PF03925 SeqA protein C-terminal domain CH46_2427 PF04794 YdjC-like protein CH46_2428 PF07883 Cupin domain CH46_2428 PF12833 Helix-turn-helix domain CH46_2429 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH46_243 PF11842 Domain of unknown function (DUF3362) CH46_243 PF04055 Radical SAM superfamily CH46_243 PF08497 Radical SAM N-terminal CH46_2430 PF02378 Phosphotransferase system, EIIC CH46_2431 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH46_2432 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH46_2433 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH46_2434 PF02254 TrkA-N domain CH46_2434 PF07885 Ion channel CH46_2435 PF06411 HdeA/HdeB family CH46_2436 PF03824 High-affinity nickel-transport protein CH46_2437 PF03253 Urea transporter CH46_2438 PF01774 UreD urease accessory protein CH46_2439 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH46_244 PF11842 Domain of unknown function (DUF3362) CH46_244 PF08497 Radical SAM N-terminal CH46_244 PF04055 Radical SAM superfamily CH46_2440 PF01730 UreF CH46_2441 PF02814 UreE urease accessory protein, N-terminal domain CH46_2441 PF05194 UreE urease accessory protein, C-terminal domain CH46_2442 PF00449 Urease alpha-subunit, N-terminal domain CH46_2442 PF01979 Amidohydrolase family CH46_2443 PF00699 Urease beta subunit CH46_2444 PF00547 Urease, gamma subunit CH46_2446 PF00005 ABC transporter CH46_2447 PF00005 ABC transporter CH46_2448 PF00528 Binding-protein-dependent transport system inner membrane component CH46_2448 PF12911 N-terminal TM domain of oligopeptide transport permease C CH46_2449 PF00528 Binding-protein-dependent transport system inner membrane component CH46_245 PF07731 Multicopper oxidase CH46_245 PF07732 Multicopper oxidase CH46_2450 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH46_2451 PF00313 'Cold-shock' DNA-binding domain CH46_2453 PF00872 Transposase, Mutator family CH46_2454 PF00872 Transposase, Mutator family CH46_2456 PF06711 Protein of unknown function (DUF1198) CH46_2457 PF09400 Protein of unknown function (DUF2002) CH46_2458 PF06392 Acid shock protein repeat CH46_246 PF01553 Acyltransferase CH46_2460 PF07972 NrdI Flavodoxin like CH46_2461 PF00317 Ribonucleotide reductase, all-alpha domain CH46_2461 PF02867 Ribonucleotide reductase, barrel domain CH46_2461 PF08343 Ribonucleotide reductase N-terminal CH46_2462 PF00268 Ribonucleotide reductase, small chain CH46_2463 PF00005 ABC transporter CH46_2463 PF00571 CBS domain CH46_2464 PF00528 Binding-protein-dependent transport system inner membrane component CH46_2465 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH46_2467 PF00665 Integrase core domain CH46_2467 PF02796 Helix-turn-helix domain of resolvase CH46_247 PF00521 DNA gyrase/topoisomerase IV, subunit A CH46_247 PF03989 DNA gyrase C-terminal domain, beta-propeller CH46_2470 PF00589 Phage integrase family CH46_2470 PF13356 Arm DNA-binding domain CH46_2471 PF01527 Transposase CH46_2473 PF12697 Alpha/beta hydrolase family CH46_2475 PF01402 Ribbon-helix-helix protein, copG family CH46_2476 PF00258 Flavodoxin CH46_2477 PF01475 Ferric uptake regulator family CH46_2478 PF03173 Putative carbohydrate binding domain CH46_2478 PF02838 Glycosyl hydrolase family 20, domain 2 CH46_2478 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CH46_2478 PF00728 Glycosyl hydrolase family 20, catalytic domain CH46_2479 PF03173 Putative carbohydrate binding domain CH46_2479 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CH46_2479 PF00728 Glycosyl hydrolase family 20, catalytic domain CH46_2479 PF02838 Glycosyl hydrolase family 20, domain 2 CH46_248 PF02525 Flavodoxin-like fold CH46_2480 PF03573 outer membrane porin, OprD family CH46_2481 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CH46_2481 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH46_2482 PF01797 Transposase IS200 like CH46_2483 PF02378 Phosphotransferase system, EIIC CH46_2483 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH46_2483 PF00367 phosphotransferase system, EIIB CH46_2484 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CH46_2485 PF01979 Amidohydrolase family CH46_2486 PF01047 MarR family CH46_2486 PF00480 ROK family CH46_2487 PF13344 Haloacid dehalogenase-like hydrolase CH46_2488 PF13537 Glutamine amidotransferase domain CH46_2488 PF00733 Asparagine synthase CH46_249 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_249 PF03466 LysR substrate binding domain CH46_2494 PF01494 FAD binding domain CH46_2495 PF00919 Uncharacterized protein family UPF0004 CH46_2495 PF01938 TRAM domain CH46_2495 PF04055 Radical SAM superfamily CH46_2496 PF02562 PhoH-like protein CH46_2497 PF02130 Uncharacterized protein family UPF0054 CH46_2498 PF03471 Transporter associated domain CH46_2498 PF00571 CBS domain CH46_2499 PF00795 Carbon-nitrogen hydrolase CH46_25 PF00258 Flavodoxin CH46_250 PF01751 Toprim domain CH46_250 PF00204 DNA gyrase B CH46_250 PF00986 DNA gyrase B subunit, carboxyl terminus CH46_250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_2500 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH46_2501 PF00528 Binding-protein-dependent transport system inner membrane component CH46_2502 PF00528 Binding-protein-dependent transport system inner membrane component CH46_2503 PF00005 ABC transporter CH46_2504 PF07295 Zinc-ribbon containing domain CH46_2505 PF08264 Anticodon-binding domain of tRNA CH46_2505 PF00133 tRNA synthetases class I (I, L, M and V) CH46_2505 PF13603 Leucyl-tRNA synthetase, Domain 2 CH46_2506 PF04390 Lipopolysaccharide-assembly CH46_2507 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CH46_2507 PF06144 DNA polymerase III, delta subunit CH46_2508 PF01467 Cytidylyltransferase-like CH46_251 PF05728 Uncharacterised protein family (UPF0227) CH46_2510 PF02590 Predicted SPOUT methyltransferase CH46_2511 PF00905 Penicillin binding protein transpeptidase domain CH46_2511 PF03717 Penicillin-binding Protein dimerisation domain CH46_2512 PF01098 Cell cycle protein CH46_2513 PF03330 Lytic transglycolase CH46_2513 PF05036 Sporulation related domain CH46_2514 PF07943 Penicillin-binding protein 5, C-terminal domain CH46_2514 PF00768 D-alanyl-D-alanine carboxypeptidase CH46_2515 PF04359 Protein of unknown function (DUF493) CH46_2516 PF03099 Biotin/lipoate A/B protein ligase family CH46_2517 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CH46_2517 PF04055 Radical SAM superfamily CH46_2518 PF02416 mttA/Hcf106 family CH46_2519 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH46_252 PF00149 Calcineurin-like phosphoesterase CH46_2520 PF00313 'Cold-shock' DNA-binding domain CH46_2522 PF00196 Bacterial regulatory proteins, luxR family CH46_2527 PF00005 ABC transporter CH46_2527 PF00664 ABC transporter transmembrane region CH46_2529 PF04962 KduI/IolB family CH46_253 PF06853 Protein of unknown function (DUF1249) CH46_2530 PF01261 Xylose isomerase-like TIM barrel CH46_2531 PF00294 pfkB family carbohydrate kinase CH46_2532 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH46_2532 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH46_2533 PF02653 Branched-chain amino acid transport system / permease component CH46_2534 PF00005 ABC transporter CH46_2535 PF13407 Periplasmic binding protein domain CH46_2536 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH46_2536 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH46_2537 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH46_2537 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH46_2538 PF00205 Thiamine pyrophosphate enzyme, central domain CH46_2538 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH46_2538 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH46_2539 PF00171 Aldehyde dehydrogenase family CH46_254 PF00293 NUDIX domain CH46_2544 PF01835 MG2 domain CH46_2544 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CH46_2544 PF07703 Alpha-2-macroglobulin bait region domain CH46_2544 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CH46_2544 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CH46_2544 PF00207 Alpha-2-macroglobulin family CH46_2544 PF17962 Bacterial macroglobulin domain 6 CH46_2545 PF00912 Transglycosylase CH46_2545 PF06832 Penicillin-Binding Protein C-terminus Family CH46_2545 PF00905 Penicillin binding protein transpeptidase domain CH46_2546 PF00872 Transposase, Mutator family CH46_2548 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH46_2549 PF00356 Bacterial regulatory proteins, lacI family CH46_2549 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH46_255 PF02321 Outer membrane efflux protein CH46_2550 PF07085 DRTGG domain CH46_2550 PF01515 Phosphate acetyl/butaryl transferase CH46_2551 PF00871 Acetokinase family CH46_2552 PF04217 Protein of unknown function, DUF412 CH46_2553 PF03887 YfbU domain CH46_2554 PF13419 Haloacid dehalogenase-like hydrolase CH46_2555 PF02080 TrkA-C domain CH46_2555 PF03600 Citrate transporter CH46_2557 PF00155 Aminotransferase class I and II CH46_2558 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_2558 PF03466 LysR substrate binding domain CH46_2559 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CH46_2560 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH46_2561 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CH46_2561 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CH46_2563 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH46_2563 PF10531 SLBB domain CH46_2563 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH46_2564 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH46_2564 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH46_2564 PF00384 Molybdopterin oxidoreductase CH46_2564 PF01568 Molydopterin dinucleotide binding domain CH46_2565 PF00146 NADH dehydrogenase CH46_2566 PF12838 4Fe-4S dicluster domain CH46_2567 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CH46_2568 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CH46_2569 PF00361 Proton-conducting membrane transporter CH46_2569 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH46_257 PF06693 Protein of unknown function (DUF1190) CH46_2570 PF00361 Proton-conducting membrane transporter CH46_2571 PF00361 Proton-conducting membrane transporter CH46_2573 PF04074 YhcH/YjgK/YiaL CH46_2574 PF01202 Shikimate kinase CH46_2575 PF00106 short chain dehydrogenase CH46_2577 PF00356 Bacterial regulatory proteins, lacI family CH46_2578 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH46_2578 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH46_2579 PF07690 Major Facilitator Superfamily CH46_258 PF03738 Glutathionylspermidine synthase preATP-grasp CH46_2580 PF03928 Haem-degrading CH46_2581 PF00920 Dehydratase family CH46_2583 PF05957 Bacterial protein of unknown function (DUF883) CH46_2585 PF00425 chorismate binding enzyme CH46_2586 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH46_2586 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH46_2586 PF16582 Middle domain of thiamine pyrophosphate CH46_2587 PF12697 Alpha/beta hydrolase family CH46_2588 PF00378 Enoyl-CoA hydratase/isomerase CH46_2589 PF13378 Enolase C-terminal domain-like CH46_259 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH46_2590 PF00501 AMP-binding enzyme CH46_2590 PF13193 AMP-binding enzyme C-terminal domain CH46_2591 PF02885 Glycosyl transferase family, helical bundle domain CH46_2592 PF07338 Protein of unknown function (DUF1471) CH46_2593 PF05971 RNA methyltransferase CH46_2594 PF01695 IstB-like ATP binding protein CH46_2595 PF01695 IstB-like ATP binding protein CH46_2597 PF02796 Helix-turn-helix domain of resolvase CH46_2597 PF00665 Integrase core domain CH46_2598 PF13426 PAS domain CH46_2598 PF08447 PAS fold CH46_2598 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH46_2599 PF00005 ABC transporter CH46_26 PF00589 Phage integrase family CH46_26 PF02899 Phage integrase, N-terminal SAM-like domain CH46_260 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CH46_2600 PF00528 Binding-protein-dependent transport system inner membrane component CH46_2601 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH46_2603 PF00210 Ferritin-like domain CH46_2604 PF13649 Methyltransferase domain CH46_2606 PF00892 EamA-like transporter family CH46_2607 PF13505 Outer membrane protein beta-barrel domain CH46_2611 PF00107 Zinc-binding dehydrogenase CH46_2611 PF08240 Alcohol dehydrogenase GroES-like domain CH46_2612 PF13407 Periplasmic binding protein domain CH46_2613 PF00005 ABC transporter CH46_2614 PF02653 Branched-chain amino acid transport system / permease component CH46_2615 PF00356 Bacterial regulatory proteins, lacI family CH46_2616 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_2616 PF03466 LysR substrate binding domain CH46_2617 PF00180 Isocitrate/isopropylmalate dehydrogenase CH46_2618 PF02028 BCCT, betaine/carnitine/choline family transporter CH46_2619 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CH46_2619 PF00355 Rieske [2Fe-2S] domain CH46_262 PF04380 Membrane fusogenic activity CH46_2620 PF00970 Oxidoreductase FAD-binding domain CH46_2620 PF00111 2Fe-2S iron-sulfur cluster binding domain CH46_2620 PF00175 Oxidoreductase NAD-binding domain CH46_2621 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH46_2621 PF17287 POTRA domain CH46_2621 PF08479 POTRA domain, ShlB-type CH46_2622 PF04829 Pre-toxin domain with VENN motif CH46_2622 PF05860 haemagglutination activity domain CH46_2622 PF13018 Extended Signal Peptide of Type V secretion system CH46_2622 PF13332 Hemagglutinin repeat CH46_2625 PF13332 Hemagglutinin repeat CH46_2625 PF04829 Pre-toxin domain with VENN motif CH46_2625 PF13018 Extended Signal Peptide of Type V secretion system CH46_2625 PF05860 haemagglutination activity domain CH46_2628 PF04829 Pre-toxin domain with VENN motif CH46_2628 PF15526 Novel toxin 21 CH46_2628 PF05594 Haemagluttinin repeat CH46_2628 PF13332 Hemagglutinin repeat CH46_2628 PF05860 haemagglutination activity domain CH46_263 PF13520 Amino acid permease CH46_2630 PF00005 ABC transporter CH46_2630 PF17912 MalK OB fold domain CH46_2631 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH46_2631 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH46_2631 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH46_2631 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH46_2632 PF00356 Bacterial regulatory proteins, lacI family CH46_2634 PF00528 Binding-protein-dependent transport system inner membrane component CH46_2635 PF00528 Binding-protein-dependent transport system inner membrane component CH46_2636 PF04041 beta-1,4-mannooligosaccharide phosphorylase CH46_264 PF00294 pfkB family carbohydrate kinase CH46_264 PF01467 Cytidylyltransferase-like CH46_2640 PF00924 Mechanosensitive ion channel CH46_2641 PF01867 CRISPR associated protein Cas1 CH46_2643 PF09611 CRISPR-associated protein (Cas_Csy1) CH46_2644 PF09614 CRISPR-associated protein (Cas_Csy2) CH46_2645 PF09615 CRISPR-associated protein (Cas_Csy3) CH46_2646 PF09618 CRISPR-associated protein (Cas_Csy4) CH46_2647 PF00248 Aldo/keto reductase family CH46_2649 PF00083 Sugar (and other) transporter CH46_265 PF08335 GlnD PII-uridylyltransferase CH46_265 PF03710 Glutamate-ammonia ligase adenylyltransferase CH46_2651 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_2651 PF03466 LysR substrate binding domain CH46_2652 PF00765 Autoinducer synthase CH46_2653 PF03472 Autoinducer binding domain CH46_2653 PF00196 Bacterial regulatory proteins, luxR family CH46_2657 PF01594 AI-2E family transporter CH46_2658 PF00196 Bacterial regulatory proteins, luxR family CH46_2659 PF01266 FAD dependent oxidoreductase CH46_266 PF01928 CYTH domain CH46_2660 PF00872 Transposase, Mutator family CH46_2661 PF13419 Haloacid dehalogenase-like hydrolase CH46_2662 PF14002 YniB-like protein CH46_2664 PF00950 ABC 3 transport family CH46_2665 PF00950 ABC 3 transport family CH46_2666 PF00005 ABC transporter CH46_2667 PF01297 Zinc-uptake complex component A periplasmic CH46_2668 PF01464 Transglycosylase SLT domain CH46_2669 PF01914 MarC family integral membrane protein CH46_267 PF08239 Bacterial SH3 domain CH46_2671 PF13619 KTSC domain CH46_2672 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH46_2672 PF03129 Anticodon binding domain CH46_2672 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH46_2672 PF02824 TGS domain CH46_2673 PF00707 Translation initiation factor IF-3, C-terminal domain CH46_2673 PF05198 Translation initiation factor IF-3, N-terminal domain CH46_2674 PF01632 Ribosomal protein L35 CH46_2675 PF00453 Ribosomal protein L20 CH46_2676 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CH46_2676 PF01409 tRNA synthetases class II core domain (F) CH46_2677 PF03483 B3/4 domain CH46_2677 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CH46_2677 PF03147 Ferredoxin-fold anticodon binding domain CH46_2677 PF03484 tRNA synthetase B5 domain CH46_2677 PF01588 Putative tRNA binding domain CH46_2678 PF00216 Bacterial DNA-binding protein CH46_268 PF01966 HD domain CH46_268 PF12627 Probable RNA and SrmB- binding site of polymerase A CH46_268 PF01743 Poly A polymerase head domain CH46_2680 PF01032 FecCD transport family CH46_2681 PF00255 Glutathione peroxidase CH46_2682 PF00005 ABC transporter CH46_2683 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH46_2684 PF00535 Glycosyl transferase family 2 CH46_2685 PF00551 Formyl transferase CH46_2685 PF02911 Formyl transferase, C-terminal domain CH46_2685 PF01370 NAD dependent epimerase/dehydratase family CH46_2686 PF01522 Polysaccharide deacetylase CH46_2687 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CH46_2688 PF00892 EamA-like transporter family CH46_269 PF02673 Bacitracin resistance protein BacA CH46_2690 PF00877 NlpC/P60 family CH46_2691 PF10437 Bacterial lipoate protein ligase C-terminus CH46_2691 PF03099 Biotin/lipoate A/B protein ligase family CH46_2692 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CH46_2693 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CH46_2694 PF00793 DAHP synthetase I family CH46_2695 PF03618 Kinase/pyrophosphorylase CH46_2696 PF00391 PEP-utilising enzyme, mobile domain CH46_2696 PF02896 PEP-utilising enzyme, TIM barrel domain CH46_2696 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CH46_2697 PF01594 AI-2E family transporter CH46_2698 PF02913 FAD linked oxidases, C-terminal domain CH46_2698 PF01565 FAD binding domain CH46_2698 PF13183 4Fe-4S dicluster domain CH46_2699 PF03061 Thioesterase superfamily CH46_27 PF10411 Disulfide bond isomerase protein N-terminus CH46_27 PF13098 Thioredoxin-like domain CH46_270 PF02152 Dihydroneopterin aldolase CH46_2700 PF01521 Iron-sulphur cluster biosynthesis CH46_2701 PF01458 Uncharacterized protein family (UPF0051) CH46_2702 PF00005 ABC transporter CH46_2703 PF01458 Uncharacterized protein family (UPF0051) CH46_2704 PF00266 Aminotransferase class-V CH46_2705 PF02657 Fe-S metabolism associated domain CH46_2706 PF17969 L,D-transpeptidase C-terminal domain CH46_2706 PF03734 L,D-transpeptidase catalytic domain CH46_2706 PF01476 LysM domain CH46_2707 PF01695 IstB-like ATP binding protein CH46_2708 PF01797 Transposase IS200 like CH46_2709 PF04728 Lipoprotein leucine-zipper CH46_271 PF02660 Glycerol-3-phosphate acyltransferase CH46_2710 PF00224 Pyruvate kinase, barrel domain CH46_2710 PF02887 Pyruvate kinase, alpha/beta domain CH46_2713 PF01554 MatE CH46_2714 PF00677 Lumazine binding domain CH46_2717 PF07690 Major Facilitator Superfamily CH46_2718 PF03466 LysR substrate binding domain CH46_2718 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_2719 PF00356 Bacterial regulatory proteins, lacI family CH46_272 PF00814 Glycoprotease family CH46_2721 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH46_2721 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH46_2722 PF00877 NlpC/P60 family CH46_2724 PF00462 Glutaredoxin CH46_2725 PF00929 Exonuclease CH46_2726 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH46_2727 PF14431 YwqJ-like deaminase CH46_2727 PF18807 Tripartite Tc toxins repeat CH46_2728 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH46_2729 PF00440 Bacterial regulatory proteins, tetR family CH46_2729 PF16925 Tetracyclin repressor-like, C-terminal domain CH46_273 PF01165 Ribosomal protein S21 CH46_2730 PF00884 Sulfatase CH46_2730 PF08019 Phosphoethanolamine transferase EptA/EptB CH46_2731 PF06945 Protein of unknown function (DUF1289) CH46_2732 PF00248 Aldo/keto reductase family CH46_2733 PF01047 MarR family CH46_2734 PF05433 Glycine zipper 2TM domain CH46_2735 PF03702 Anhydro-N-acetylmuramic acid kinase CH46_2736 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CH46_2737 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CH46_2737 PF01243 Pyridoxamine 5'-phosphate oxidase CH46_2738 PF01479 S4 domain CH46_2738 PF00579 tRNA synthetases class I (W and Y) CH46_2739 PF08543 Phosphomethylpyrimidine kinase CH46_274 PF08278 DNA primase DnaG DnaB-binding CH46_274 PF01807 CHC2 zinc finger CH46_274 PF08275 DNA primase catalytic core, N-terminal domain CH46_274 PF10410 DnaB-helicase binding domain of primase CH46_2740 PF00043 Glutathione S-transferase, C-terminal domain CH46_2740 PF02798 Glutathione S-transferase, N-terminal domain CH46_2741 PF01695 IstB-like ATP binding protein CH46_2742 PF11656 YjbD family (DUF3811) CH46_2743 PF04893 Yip1 domain CH46_2744 PF00854 POT family CH46_2747 PF00005 ABC transporter CH46_2748 PF00005 ABC transporter CH46_2748 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH46_2749 PF12911 N-terminal TM domain of oligopeptide transport permease C CH46_2749 PF00528 Binding-protein-dependent transport system inner membrane component CH46_275 PF04545 Sigma-70, region 4 CH46_275 PF04546 Sigma-70, non-essential region CH46_275 PF04542 Sigma-70 region 2 CH46_275 PF04539 Sigma-70 region 3 CH46_275 PF00140 Sigma-70 factor, region 1.2 CH46_275 PF03979 Sigma-70 factor, region 1.1 CH46_2750 PF00528 Binding-protein-dependent transport system inner membrane component CH46_2751 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH46_2752 PF01797 Transposase IS200 like CH46_2753 PF02954 Bacterial regulatory protein, Fis family CH46_2753 PF00158 Sigma-54 interaction domain CH46_2754 PF04012 PspA/IM30 family CH46_2755 PF06667 Phage shock protein B CH46_2756 PF04024 PspC domain CH46_2758 PF04317 YcjX-like family, DUF463 CH46_2759 PF05128 Domain of unknown function (DUF697) CH46_2762 PF18024 Helix-turn-helix domain CH46_2762 PF00158 Sigma-54 interaction domain CH46_2763 PF01797 Transposase IS200 like CH46_2764 PF08534 Redoxin CH46_2765 PF13378 Enolase C-terminal domain-like CH46_2765 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH46_2766 PF00246 Zinc carboxypeptidase CH46_2767 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH46_2768 PF01544 CorA-like Mg2+ transporter protein CH46_2770 PF13472 GDSL-like Lipase/Acylhydrolase family CH46_2770 PF07859 alpha/beta hydrolase fold CH46_2772 PF01171 PP-loop family CH46_2773 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH46_2773 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CH46_2773 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CH46_2773 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CH46_2773 PF10371 Domain of unknown function CH46_2774 PF00893 Small Multidrug Resistance protein CH46_2775 PF02308 MgtC family CH46_2776 PF03891 Domain of unknown function (DUF333) CH46_2777 PF03724 META domain CH46_2778 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH46_2778 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH46_2779 PF11739 Dicarboxylate transport CH46_2780 PF13617 YnbE-like lipoprotein CH46_2781 PF07027 Protein of unknown function (DUF1318) CH46_2782 PF08125 Mannitol dehydrogenase C-terminal domain CH46_2782 PF01232 Mannitol dehydrogenase Rossmann domain CH46_2783 PF04198 Putative sugar-binding domain CH46_2783 PF00325 Bacterial regulatory proteins, crp family CH46_2784 PF02525 Flavodoxin-like fold CH46_2785 PF04408 Helicase associated domain (HA2) CH46_2785 PF00271 Helicase conserved C-terminal domain CH46_2785 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CH46_2785 PF11898 Domain of unknown function (DUF3418) CH46_2785 PF00270 DEAD/DEAH box helicase CH46_2788 PF00089 Trypsin CH46_2790 PF01292 Prokaryotic cytochrome b561 CH46_2791 PF04264 YceI-like domain CH46_2793 PF14431 YwqJ-like deaminase CH46_2793 PF18807 Tripartite Tc toxins repeat CH46_2794 PF01797 Transposase IS200 like CH46_2795 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CH46_2796 PF00672 HAMP domain CH46_2796 PF00512 His Kinase A (phospho-acceptor) domain CH46_2796 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_2797 PF00072 Response regulator receiver domain CH46_2797 PF00486 Transcriptional regulatory protein, C terminal CH46_2799 PF13520 Amino acid permease CH46_28 PF01368 DHH family CH46_28 PF17768 RecJ OB domain CH46_28 PF02272 DHHA1 domain CH46_2800 PF07338 Protein of unknown function (DUF1471) CH46_2801 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CH46_2801 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CH46_2801 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CH46_2802 PF02233 NAD(P) transhydrogenase beta subunit CH46_2803 PF00582 Universal stress protein family CH46_2804 PF00027 Cyclic nucleotide-binding domain CH46_2804 PF13545 Crp-like helix-turn-helix domain CH46_2805 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH46_2805 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH46_2806 PF00245 Alkaline phosphatase CH46_2809 PF13419 Haloacid dehalogenase-like hydrolase CH46_2810 PF01842 ACT domain CH46_2811 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH46_2811 PF00205 Thiamine pyrophosphate enzyme, central domain CH46_2811 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH46_2816 PF01048 Phosphorylase superfamily CH46_2816 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CH46_2817 PF00528 Binding-protein-dependent transport system inner membrane component CH46_2818 PF09084 NMT1/THI5 like CH46_2819 PF13407 Periplasmic binding protein domain CH46_282 PF01695 IstB-like ATP binding protein CH46_2821 PF00356 Bacterial regulatory proteins, lacI family CH46_2825 PF05707 Zonular occludens toxin (Zot) CH46_283 PF02796 Helix-turn-helix domain of resolvase CH46_283 PF00665 Integrase core domain CH46_2833 PF05707 Zonular occludens toxin (Zot) CH46_2843 PF00654 Voltage gated chloride channel CH46_2846 PF00480 ROK family CH46_2847 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_2847 PF03466 LysR substrate binding domain CH46_2848 PF07690 Major Facilitator Superfamily CH46_2849 PF05472 DNA replication terminus site-binding protein (Ter protein) CH46_2850 PF10415 Fumarase C C-terminus CH46_2850 PF00206 Lyase CH46_2851 PF01238 Phosphomannose isomerase type I CH46_2852 PF06097 Bacterial protein of unknown function (DUF945) CH46_2854 PF13593 SBF-like CPA transporter family (DUF4137) CH46_2855 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH46_2855 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH46_2856 PF02311 AraC-like ligand binding domain CH46_2856 PF12833 Helix-turn-helix domain CH46_2857 PF02653 Branched-chain amino acid transport system / permease component CH46_2858 PF00005 ABC transporter CH46_2859 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH46_2860 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH46_2861 PF02610 L-arabinose isomerase CH46_2861 PF11762 L-arabinose isomerase C-terminal domain CH46_2863 PF03412 Peptidase C39 family CH46_2863 PF00005 ABC transporter CH46_2863 PF00664 ABC transporter transmembrane region CH46_2865 PF13533 Biotin-lipoyl like CH46_2866 PF03412 Peptidase C39 family CH46_2866 PF00005 ABC transporter CH46_2866 PF00664 ABC transporter transmembrane region CH46_2867 PF10754 Protein of unknown function (DUF2569) CH46_2868 PF02508 Rnf-Nqr subunit, membrane protein CH46_2869 PF04060 Putative Fe-S cluster CH46_2870 PF10531 SLBB domain CH46_2870 PF13375 RnfC Barrel sandwich hybrid domain CH46_2870 PF13237 4Fe-4S dicluster domain CH46_2870 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH46_2871 PF06445 GyrI-like small molecule binding domain CH46_2871 PF12833 Helix-turn-helix domain CH46_2872 PF03116 NQR2, RnfD, RnfE family CH46_2873 PF04205 FMN-binding domain CH46_2874 PF02508 Rnf-Nqr subunit, membrane protein CH46_2875 PF00633 Helix-hairpin-helix motif CH46_2875 PF00730 HhH-GPD superfamily base excision DNA repair protein CH46_2875 PF10576 Iron-sulfur binding domain of endonuclease III CH46_2876 PF01370 NAD dependent epimerase/dehydratase family CH46_2877 PF07690 Major Facilitator Superfamily CH46_2878 PF00773 RNB domain CH46_2878 PF17876 Cold shock domain CH46_2878 PF08206 Ribonuclease B OB domain CH46_2878 PF00575 S1 RNA binding domain CH46_2879 PF02554 Carbon starvation protein CstA CH46_2879 PF13722 5TM C-terminal transporter carbon starvation CstA CH46_288 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_288 PF03466 LysR substrate binding domain CH46_2880 PF04328 Selenoprotein, putative CH46_2881 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH46_2883 PF00596 Class II Aldolase and Adducin N-terminal domain CH46_2884 PF05433 Glycine zipper 2TM domain CH46_2885 PF01253 Translation initiation factor SUI1 CH46_2886 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CH46_2888 PF18073 Rubredoxin metal binding domain CH46_2889 PF06305 Lipopolysaccharide assembly protein A domain CH46_2890 PF01569 PAP2 superfamily CH46_2891 PF00925 GTP cyclohydrolase II CH46_2892 PF00330 Aconitase family (aconitate hydratase) CH46_2892 PF00694 Aconitase C-terminal domain CH46_2894 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_2894 PF03466 LysR substrate binding domain CH46_2895 PF01396 Topoisomerase DNA binding C4 zinc finger CH46_2895 PF01751 Toprim domain CH46_2895 PF01131 DNA topoisomerase CH46_2895 PF08272 Topoisomerase I zinc-ribbon-like CH46_2896 PF10692 Protein of unknown function (DUF2498) CH46_2897 PF08496 Peptidase family S49 N-terminal CH46_2897 PF01343 Peptidase family S49 CH46_2898 PF00106 short chain dehydrogenase CH46_2899 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CH46_29 PF03462 PCRF domain CH46_29 PF00472 RF-1 domain CH46_2900 PF01479 S4 domain CH46_2900 PF00849 RNA pseudouridylate synthase CH46_2901 PF01300 Telomere recombination CH46_2902 PF02811 PHP domain CH46_2903 PF00425 chorismate binding enzyme CH46_2903 PF04715 Anthranilate synthase component I, N terminal region CH46_2904 PF00117 Glutamine amidotransferase class-I CH46_2905 PF02885 Glycosyl transferase family, helical bundle domain CH46_2905 PF00591 Glycosyl transferase family, a/b domain CH46_2906 PF00218 Indole-3-glycerol phosphate synthase CH46_2906 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CH46_2907 PF00291 Pyridoxal-phosphate dependent enzyme CH46_2908 PF00290 Tryptophan synthase alpha chain CH46_2910 PF03922 OmpW family CH46_2914 PF04279 Intracellular septation protein A CH46_2915 PF03061 Thioesterase superfamily CH46_2917 PF00872 Transposase, Mutator family CH46_2918 PF03544 Gram-negative bacterial TonB protein C-terminal CH46_2919 PF03795 YCII-related domain CH46_292 PF01042 Endoribonuclease L-PSP CH46_2922 PF13505 Outer membrane protein beta-barrel domain CH46_2923 PF13396 Phospholipase_D-nuclease N-terminal CH46_2923 PF13091 PLD-like domain CH46_2924 PF04269 Protein of unknown function, DUF440 CH46_2926 PF00005 ABC transporter CH46_2926 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH46_2927 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH46_2927 PF00005 ABC transporter CH46_2928 PF12911 N-terminal TM domain of oligopeptide transport permease C CH46_2928 PF00528 Binding-protein-dependent transport system inner membrane component CH46_2929 PF00528 Binding-protein-dependent transport system inner membrane component CH46_2930 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH46_2931 PF01914 MarC family integral membrane protein CH46_2932 PF00171 Aldehyde dehydrogenase family CH46_2932 PF00465 Iron-containing alcohol dehydrogenase CH46_2933 PF02796 Helix-turn-helix domain of resolvase CH46_2933 PF00665 Integrase core domain CH46_2934 PF01695 IstB-like ATP binding protein CH46_2935 PF00265 Thymidine kinase CH46_2936 PF00816 H-NS histone family CH46_2937 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH46_2937 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH46_2937 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH46_2938 PF00072 Response regulator receiver domain CH46_2939 PF02810 SEC-C motif CH46_2940 PF00872 Transposase, Mutator family CH46_2941 PF01842 ACT domain CH46_2941 PF00551 Formyl transferase CH46_2944 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_2944 PF03466 LysR substrate binding domain CH46_2945 PF03372 Endonuclease/Exonuclease/phosphatase family CH46_2946 PF00293 NUDIX domain CH46_2947 PF07383 Protein of unknown function (DUF1496) CH46_2948 PF01131 DNA topoisomerase CH46_2948 PF01751 Toprim domain CH46_2949 PF02769 AIR synthase related protein, C-terminal domain CH46_2949 PF00586 AIR synthase related protein, N-terminal domain CH46_2950 PF00881 Nitroreductase family CH46_2951 PF01343 Peptidase family S49 CH46_2952 PF00710 Asparaginase, N-terminal CH46_2952 PF17763 Glutaminase/Asparaginase C-terminal domain CH46_2953 PF00857 Isochorismatase family CH46_2954 PF07023 Protein of unknown function (DUF1315) CH46_2955 PF01641 SelR domain CH46_2956 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH46_2956 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH46_2957 PF01263 Aldose 1-epimerase CH46_2958 PF06629 MltA-interacting protein MipA CH46_2959 PF06798 PrkA serine protein kinase C-terminal domain CH46_2959 PF08298 PrkA AAA domain CH46_2960 PF04285 Protein of unknown function (DUF444) CH46_2962 PF03466 LysR substrate binding domain CH46_2962 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_2963 PF02678 Pirin CH46_2963 PF05726 Pirin C-terminal cupin domain CH46_2964 PF07690 Major Facilitator Superfamily CH46_2965 PF01266 FAD dependent oxidoreductase CH46_2966 PF04293 SpoVR like protein CH46_2967 PF07840 FadR C-terminal domain CH46_2967 PF00392 Bacterial regulatory proteins, gntR family CH46_2968 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CH46_2969 PF02600 Disulfide bond formation protein DsbB CH46_2972 PF00266 Aminotransferase class-V CH46_2974 PF00872 Transposase, Mutator family CH46_2975 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CH46_299 PF00529 HlyD membrane-fusion protein of T1SS CH46_299 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH46_2990 PF01797 Transposase IS200 like CH46_3 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH46_30 PF00152 tRNA synthetases class II (D, K and N) CH46_30 PF01336 OB-fold nucleic acid binding domain CH46_300 PF04632 Fusaric acid resistance protein family CH46_3006 PF00872 Transposase, Mutator family CH46_3019 PF06530 Phage antitermination protein Q CH46_302 PF01915 Glycosyl hydrolase family 3 C-terminal domain CH46_302 PF00933 Glycosyl hydrolase family 3 N terminal domain CH46_302 PF14310 Fibronectin type III-like domain CH46_3021 PF05772 NinB protein CH46_3024 PF01695 IstB-like ATP binding protein CH46_3025 PF01695 IstB-like ATP binding protein CH46_3026 PF00665 Integrase core domain CH46_3026 PF02796 Helix-turn-helix domain of resolvase CH46_3027 PF00589 Phage integrase family CH46_3027 PF12167 Arm DNA-binding domain CH46_3028 PF03692 Putative zinc- or iron-chelating domain CH46_3029 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH46_3030 PF13406 Transglycosylase SLT domain CH46_3031 PF05166 YcgL domain CH46_3032 PF05209 Septum formation inhibitor MinC, N-terminal domain CH46_3032 PF03775 Septum formation inhibitor MinC, C-terminal domain CH46_3033 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CH46_3034 PF03776 Septum formation topological specificity factor MinE CH46_3035 PF00570 HRDC domain CH46_3035 PF01612 3'-5' exonuclease CH46_3036 PF00501 AMP-binding enzyme CH46_3036 PF13193 AMP-binding enzyme C-terminal domain CH46_3037 PF03843 Outer membrane lipoprotein Slp family CH46_3038 PF00814 Glycoprotease family CH46_3039 PF13307 Helicase C-terminal domain CH46_3039 PF04851 Type III restriction enzyme, res subunit CH46_304 PF00528 Binding-protein-dependent transport system inner membrane component CH46_3040 PF01042 Endoribonuclease L-PSP CH46_3041 PF00893 Small Multidrug Resistance protein CH46_3042 PF00893 Small Multidrug Resistance protein CH46_3043 PF01081 KDPG and KHG aldolase CH46_3045 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CH46_3045 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CH46_3046 PF01380 SIS domain CH46_3046 PF01418 Helix-turn-helix domain, rpiR family CH46_3047 PF00224 Pyruvate kinase, barrel domain CH46_3047 PF02887 Pyruvate kinase, alpha/beta domain CH46_3048 PF03279 Bacterial lipid A biosynthesis acyltransferase CH46_3049 PF01476 LysM domain CH46_3049 PF01551 Peptidase family M23 CH46_3049 PF08525 Opacity-associated protein A N-terminal motif CH46_305 PF00528 Binding-protein-dependent transport system inner membrane component CH46_3050 PF01297 Zinc-uptake complex component A periplasmic CH46_3051 PF00005 ABC transporter CH46_3052 PF00950 ABC 3 transport family CH46_3053 PF05496 Holliday junction DNA helicase RuvB P-loop domain CH46_3053 PF05491 RuvB C-terminal winged helix domain CH46_3053 PF17864 RuvB AAA lid domain CH46_3054 PF07499 RuvA, C-terminal domain CH46_3054 PF01330 RuvA N terminal domain CH46_3055 PF02075 Crossover junction endodeoxyribonuclease RuvC CH46_3056 PF01709 Transcriptional regulator CH46_3057 PF00293 NUDIX domain CH46_3058 PF02938 GAD domain CH46_3058 PF00152 tRNA synthetases class II (D, K and N) CH46_3058 PF01336 OB-fold nucleic acid binding domain CH46_3059 PF01904 Protein of unknown function DUF72 CH46_306 PF13416 Bacterial extracellular solute-binding protein CH46_3060 PF01124 MAPEG family CH46_3061 PF13649 Methyltransferase domain CH46_3062 PF08003 Protein of unknown function (DUF1698) CH46_3063 PF03932 CutC family CH46_3064 PF06185 YecM protein CH46_3065 PF05746 DALR anticodon binding domain CH46_3065 PF00750 tRNA synthetases class I (R) CH46_3065 PF03485 Arginyl tRNA synthetase N terminal domain CH46_3066 PF05860 haemagglutination activity domain CH46_3066 PF13332 Hemagglutinin repeat CH46_3067 PF08479 POTRA domain, ShlB-type CH46_3067 PF17287 POTRA domain CH46_3067 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH46_3068 PF03023 Lipid II flippase MurJ CH46_3069 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH46_307 PF00356 Bacterial regulatory proteins, lacI family CH46_3070 PF13302 Acetyltransferase (GNAT) domain CH46_3071 PF07690 Major Facilitator Superfamily CH46_3072 PF07273 Protein of unknown function (DUF1439) CH46_3073 PF02613 Nitrate reductase delta subunit CH46_3074 PF02811 PHP domain CH46_3076 PF01325 Iron dependent repressor, N-terminal DNA binding domain CH46_3076 PF00480 ROK family CH46_3077 PF03009 Glycerophosphoryl diester phosphodiesterase family CH46_3078 PF00005 ABC transporter CH46_3078 PF08402 TOBE domain CH46_3079 PF01797 Transposase IS200 like CH46_308 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CH46_3080 PF00005 ABC transporter CH46_3080 PF08402 TOBE domain CH46_3081 PF00528 Binding-protein-dependent transport system inner membrane component CH46_3082 PF00528 Binding-protein-dependent transport system inner membrane component CH46_3084 PF03009 Glycerophosphoryl diester phosphodiesterase family CH46_3086 PF00916 Sulfate permease family CH46_3086 PF01740 STAS domain CH46_3087 PF00665 Integrase core domain CH46_3087 PF02796 Helix-turn-helix domain of resolvase CH46_3088 PF01695 IstB-like ATP binding protein CH46_3089 PF01740 STAS domain CH46_3089 PF00916 Sulfate permease family CH46_309 PF03459 TOBE domain CH46_309 PF17912 MalK OB fold domain CH46_309 PF00005 ABC transporter CH46_3090 PF01797 Transposase IS200 like CH46_3091 PF00793 DAHP synthetase I family CH46_3092 PF13369 Transglutaminase-like superfamily CH46_3093 PF04247 Invasion gene expression up-regulator, SirB CH46_3094 PF17827 PrmC N-terminal domain CH46_3094 PF13847 Methyltransferase domain CH46_3095 PF03462 PCRF domain CH46_3095 PF00472 RF-1 domain CH46_3096 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CH46_3096 PF01488 Shikimate / quinate 5-dehydrogenase CH46_3096 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CH46_3097 PF03550 Outer membrane lipoprotein LolB CH46_3098 PF08544 GHMP kinases C terminal CH46_3098 PF00288 GHMP kinases N terminal domain CH46_3099 PF14572 Phosphoribosyl synthetase-associated domain CH46_3099 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CH46_3100 PF10762 Protein of unknown function (DUF2583) CH46_3101 PF01195 Peptidyl-tRNA hydrolase CH46_3102 PF06071 Protein of unknown function (DUF933) CH46_3102 PF01926 50S ribosome-binding GTPase CH46_3111 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CH46_3112 PF00072 Response regulator receiver domain CH46_3112 PF00486 Transcriptional regulatory protein, C terminal CH46_3113 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_3113 PF00512 His Kinase A (phospho-acceptor) domain CH46_3113 PF00672 HAMP domain CH46_3122 PF08242 Methyltransferase domain CH46_3127 PF00872 Transposase, Mutator family CH46_313 PF04829 Pre-toxin domain with VENN motif CH46_313 PF13018 Extended Signal Peptide of Type V secretion system CH46_313 PF05860 haemagglutination activity domain CH46_313 PF13332 Hemagglutinin repeat CH46_3136 PF01370 NAD dependent epimerase/dehydratase family CH46_3137 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH46_3137 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH46_3138 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH46_3138 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH46_3140 PF05962 HutD CH46_3141 PF01979 Amidohydrolase family CH46_3142 PF07702 UTRA domain CH46_3142 PF00392 Bacterial regulatory proteins, gntR family CH46_3143 PF01979 Amidohydrolase family CH46_3145 PF01695 IstB-like ATP binding protein CH46_3146 PF02796 Helix-turn-helix domain of resolvase CH46_3146 PF00665 Integrase core domain CH46_3147 PF00267 Gram-negative porin CH46_3148 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CH46_3149 PF04996 Succinylarginine dihydrolase CH46_315 PF04829 Pre-toxin domain with VENN motif CH46_315 PF13018 Extended Signal Peptide of Type V secretion system CH46_315 PF05860 haemagglutination activity domain CH46_315 PF13332 Hemagglutinin repeat CH46_3150 PF00171 Aldehyde dehydrogenase family CH46_3151 PF04958 Arginine N-succinyltransferase beta subunit CH46_3152 PF00202 Aminotransferase class-III CH46_3155 PF00155 Aminotransferase class I and II CH46_3155 PF00392 Bacterial regulatory proteins, gntR family CH46_3156 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_3156 PF00672 HAMP domain CH46_3156 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CH46_3156 PF07730 Histidine kinase CH46_3157 PF01699 Sodium/calcium exchanger protein CH46_3158 PF02562 PhoH-like protein CH46_3161 PF13994 PgaD-like protein CH46_3162 PF00535 Glycosyl transferase family 2 CH46_3163 PF01522 Polysaccharide deacetylase CH46_3163 PF14883 Hypothetical glycosyl hydrolase family 13 CH46_3165 PF00557 Metallopeptidase family M24 CH46_3166 PF03848 Tellurite resistance protein TehB CH46_3166 PF09313 Domain of unknown function (DUF1971) CH46_3168 PF00578 AhpC/TSA family CH46_3169 PF12704 MacB-like periplasmic core domain CH46_3169 PF00005 ABC transporter CH46_3169 PF02687 FtsX-like permease family CH46_317 PF13018 Extended Signal Peptide of Type V secretion system CH46_317 PF04829 Pre-toxin domain with VENN motif CH46_317 PF13332 Hemagglutinin repeat CH46_317 PF05860 haemagglutination activity domain CH46_3171 PF00005 ABC transporter CH46_3171 PF02687 FtsX-like permease family CH46_3171 PF12704 MacB-like periplasmic core domain CH46_3173 PF10634 Fe2+ transport protein CH46_3174 PF03239 Iron permease FTR1 family CH46_3176 PF04960 Glutaminase CH46_3177 PF08220 DeoR-like helix-turn-helix domain CH46_3177 PF00455 DeoR C terminal sensor domain CH46_3178 PF00324 Amino acid permease CH46_3179 PF00155 Aminotransferase class I and II CH46_318 PF05860 haemagglutination activity domain CH46_318 PF04829 Pre-toxin domain with VENN motif CH46_318 PF13018 Extended Signal Peptide of Type V secretion system CH46_318 PF13332 Hemagglutinin repeat CH46_3180 PF02508 Rnf-Nqr subunit, membrane protein CH46_3182 PF04909 Amidohydrolase CH46_3186 PF03466 LysR substrate binding domain CH46_3186 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_3187 PF03328 HpcH/HpaI aldolase/citrate lyase family CH46_3188 PF01575 MaoC like domain CH46_3189 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CH46_3189 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CH46_319 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH46_319 PF17287 POTRA domain CH46_319 PF08479 POTRA domain, ShlB-type CH46_3191 PF00072 Response regulator receiver domain CH46_3191 PF00196 Bacterial regulatory proteins, luxR family CH46_3195 PF02753 Pili assembly chaperone PapD, C-terminal domain CH46_3195 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH46_3196 PF13953 PapC C-terminal domain CH46_3196 PF13954 PapC N-terminal domain CH46_3196 PF00577 Outer membrane usher protein CH46_3198 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH46_3198 PF02753 Pili assembly chaperone PapD, C-terminal domain CH46_32 PF13356 Arm DNA-binding domain CH46_32 PF14659 Phage integrase, N-terminal SAM-like domain CH46_32 PF00589 Phage integrase family CH46_320 PF00092 von Willebrand factor type A domain CH46_3200 PF13356 Arm DNA-binding domain CH46_3200 PF00589 Phage integrase family CH46_3201 PF00425 chorismate binding enzyme CH46_3202 PF07690 Major Facilitator Superfamily CH46_3203 PF00664 ABC transporter transmembrane region CH46_3203 PF00005 ABC transporter CH46_3204 PF08021 Siderophore-interacting FAD-binding domain CH46_3204 PF04954 Siderophore-interacting protein CH46_3204 PF00664 ABC transporter transmembrane region CH46_3204 PF00005 ABC transporter CH46_3206 PF00501 AMP-binding enzyme CH46_3206 PF08242 Methyltransferase domain CH46_3206 PF00550 Phosphopantetheine attachment site CH46_3206 PF00668 Condensation domain CH46_3207 PF16197 Ketoacyl-synthetase C-terminal extension CH46_3207 PF00668 Condensation domain CH46_3207 PF00698 Acyl transferase domain CH46_3207 PF00109 Beta-ketoacyl synthase, N-terminal domain CH46_3207 PF00550 Phosphopantetheine attachment site CH46_3207 PF02801 Beta-ketoacyl synthase, C-terminal domain CH46_3209 PF00975 Thioesterase domain CH46_321 PF02342 TerD domain CH46_3210 PF13193 AMP-binding enzyme C-terminal domain CH46_3210 PF00501 AMP-binding enzyme CH46_3211 PF07715 TonB-dependent Receptor Plug Domain CH46_3211 PF00593 TonB dependent receptor CH46_3219 PF01695 IstB-like ATP binding protein CH46_3220 PF00665 Integrase core domain CH46_3220 PF02796 Helix-turn-helix domain of resolvase CH46_3223 PF00005 ABC transporter CH46_3223 PF08402 TOBE domain CH46_3224 PF00528 Binding-protein-dependent transport system inner membrane component CH46_3225 PF00528 Binding-protein-dependent transport system inner membrane component CH46_3227 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH46_3227 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH46_323 PF00092 von Willebrand factor type A domain CH46_3234 PF00872 Transposase, Mutator family CH46_3235 PF00872 Transposase, Mutator family CH46_3247 PF05638 Type VI secretion system effector, Hcp CH46_3256 PF01066 CDP-alcohol phosphatidyltransferase CH46_3257 PF08459 UvrC Helix-hairpin-helix N-terminal CH46_3257 PF01541 GIY-YIG catalytic domain CH46_3257 PF02151 UvrB/uvrC motif CH46_3258 PF00196 Bacterial regulatory proteins, luxR family CH46_3258 PF00072 Response regulator receiver domain CH46_3259 PF10769 Protein of unknown function (DUF2594) CH46_326 PF03729 Short repeat of unknown function (DUF308) CH46_3260 PF06942 GlpM protein CH46_3262 PF13505 Outer membrane protein beta-barrel domain CH46_3264 PF00324 Amino acid permease CH46_3265 PF01344 Kelch motif CH46_3266 PF03358 NADPH-dependent FMN reductase CH46_3267 PF04261 Dyp-type peroxidase family CH46_3268 PF09375 Imelysin CH46_3268 PF13473 Cupredoxin-like domain CH46_3269 PF03239 Iron permease FTR1 family CH46_327 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH46_327 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH46_3270 PF00474 Sodium:solute symporter family CH46_3272 PF01619 Proline dehydrogenase CH46_3272 PF14850 DNA-binding domain of Proline dehydrogenase CH46_3272 PF00171 Aldehyde dehydrogenase family CH46_3272 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CH46_3278 PF00291 Pyridoxal-phosphate dependent enzyme CH46_3279 PF02899 Phage integrase, N-terminal SAM-like domain CH46_328 PF05175 Methyltransferase small domain CH46_3280 PF04545 Sigma-70, region 4 CH46_3280 PF04539 Sigma-70 region 3 CH46_3280 PF04542 Sigma-70 region 2 CH46_3281 PF00700 Bacterial flagellin C-terminal helical region CH46_3281 PF08884 Flagellin D3 domain CH46_3281 PF00669 Bacterial flagellin N-terminal helical region CH46_3282 PF07196 Flagellin hook IN motif CH46_3282 PF02465 Flagellar hook-associated protein 2 N-terminus CH46_3282 PF07195 Flagellar hook-associated protein 2 C-terminus CH46_3283 PF02561 Flagellar protein FliS CH46_3284 PF05400 Flagellar protein FliT CH46_3285 PF12833 Helix-turn-helix domain CH46_3286 PF02743 Cache domain CH46_3286 PF00672 HAMP domain CH46_3286 PF00211 Adenylate and Guanylate cyclase catalytic domain CH46_3287 PF01966 HD domain CH46_3288 PF00730 HhH-GPD superfamily base excision DNA repair protein CH46_329 PF03797 Autotransporter beta-domain CH46_3291 PF02049 Flagellar hook-basal body complex protein FliE CH46_3292 PF08345 Flagellar M-ring protein C-terminal CH46_3292 PF01514 Secretory protein of YscJ/FliF family CH46_3293 PF01706 FliG C-terminal domain CH46_3293 PF14841 FliG middle domain CH46_3293 PF14842 FliG N-terminal domain CH46_3294 PF02108 Flagellar assembly protein FliH CH46_3295 PF18269 T3SS EscN ATPase C-terminal domain CH46_3295 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH46_3296 PF02050 Flagellar FliJ protein CH46_3297 PF02120 Flagellar hook-length control protein FliK CH46_3298 PF03748 Flagellar basal body-associated protein FliL CH46_3299 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH46_3299 PF02154 Flagellar motor switch protein FliM CH46_330 PF01863 Protein of unknown function DUF45 CH46_3300 PF16973 Flagellar motor switch protein FliN N-terminal CH46_3300 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH46_3301 PF04347 Flagellar biosynthesis protein, FliO CH46_3302 PF00813 FliP family CH46_3303 PF01313 Bacterial export proteins, family 3 CH46_3304 PF01311 Bacterial export proteins, family 1 CH46_3307 PF00294 pfkB family carbohydrate kinase CH46_3308 PF02653 Branched-chain amino acid transport system / permease component CH46_3309 PF00005 ABC transporter CH46_331 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH46_3310 PF13407 Periplasmic binding protein domain CH46_3311 PF02653 Branched-chain amino acid transport system / permease component CH46_3313 PF00596 Class II Aldolase and Adducin N-terminal domain CH46_3314 PF04198 Putative sugar-binding domain CH46_3315 PF00669 Bacterial flagellin N-terminal helical region CH46_3316 PF00460 Flagella basal body rod protein CH46_3316 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH46_3317 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CH46_3317 PF10135 Rod binding protein CH46_3318 PF02119 Flagellar P-ring protein CH46_3319 PF02107 Flagellar L-ring protein CH46_332 PF00375 Sodium:dicarboxylate symporter family CH46_3320 PF00460 Flagella basal body rod protein CH46_3320 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH46_3321 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH46_3321 PF00460 Flagella basal body rod protein CH46_3322 PF00460 Flagella basal body rod protein CH46_3322 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH46_3322 PF07559 Flagellar basal body protein FlaE CH46_3323 PF13860 FlgD Ig-like domain CH46_3323 PF03963 Flagellar hook capping protein - N-terminal region CH46_3323 PF13861 FlgD Tudor-like domain CH46_3324 PF00460 Flagella basal body rod protein CH46_3324 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH46_3325 PF00460 Flagella basal body rod protein CH46_3326 PF13144 Chaperone for flagella basal body P-ring formation CH46_3326 PF17656 FlgA N-terminal domain CH46_3327 PF04316 Anti-sigma-28 factor, FlgM CH46_3328 PF05130 FlgN protein CH46_3329 PF02369 Bacterial Ig-like domain (group 1) CH46_3329 PF09134 Invasin, domain 3 CH46_3329 PF11924 Inverse autotransporter, beta-domain CH46_3329 PF07979 Intimin C-type lectin domain CH46_3330 PF01797 Transposase IS200 like CH46_3331 PF02369 Bacterial Ig-like domain (group 1) CH46_3331 PF11924 Inverse autotransporter, beta-domain CH46_3331 PF07979 Intimin C-type lectin domain CH46_3331 PF09134 Invasin, domain 3 CH46_3332 PF06366 Flagellar protein FlhE CH46_3333 PF00771 FHIPEP family CH46_3334 PF01312 FlhB HrpN YscU SpaS Family CH46_3337 PF10709 Protein of unknown function (DUF2511) CH46_3339 PF04234 CopC domain CH46_334 PF01797 Transposase IS200 like CH46_3340 PF00210 Ferritin-like domain CH46_3341 PF06440 DNA polymerase III, theta subunit CH46_3342 PF00561 alpha/beta hydrolase fold CH46_3343 PF00326 Prolyl oligopeptidase family CH46_3343 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CH46_3344 PF13995 YebF-like protein CH46_3346 PF07130 YebG protein CH46_3347 PF00271 Helicase conserved C-terminal domain CH46_3347 PF00270 DEAD/DEAH box helicase CH46_3347 PF03880 DbpA RNA binding domain CH46_3348 PF02222 ATP-grasp domain CH46_3349 PF03701 Uncharacterised protein family (UPF0181) CH46_335 PF10688 Bacterial inner membrane protein CH46_3350 PF00425 chorismate binding enzyme CH46_3350 PF04715 Anthranilate synthase component I, N terminal region CH46_3351 PF00293 NUDIX domain CH46_3352 PF03313 Serine dehydratase alpha chain CH46_3352 PF03315 Serine dehydratase beta chain CH46_3353 PF01613 Flavin reductase like domain CH46_3354 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal CH46_3354 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal CH46_3355 PF07690 Major Facilitator Superfamily CH46_3356 PF03328 HpcH/HpaI aldolase/citrate lyase family CH46_3357 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH46_3358 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase CH46_3359 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH46_336 PF08666 SAF domain CH46_336 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CH46_3360 PF00171 Aldehyde dehydrogenase family CH46_3361 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH46_3362 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH46_3363 PF01047 MarR family CH46_3364 PF03741 Integral membrane protein TerC family CH46_3364 PF03471 Transporter associated domain CH46_3365 PF03830 PTS system sorbose subfamily IIB component CH46_3365 PF03610 PTS system fructose IIA component CH46_3366 PF03609 PTS system sorbose-specific iic component CH46_3367 PF03613 PTS system mannose/fructose/sorbose family IID component CH46_3368 PF06173 Protein of unknown function (DUF986) CH46_3369 PF02659 Putative manganese efflux pump CH46_337 PF01232 Mannitol dehydrogenase Rossmann domain CH46_337 PF08125 Mannitol dehydrogenase C-terminal domain CH46_3370 PF07715 TonB-dependent Receptor Plug Domain CH46_3370 PF00593 TonB dependent receptor CH46_3371 PF00563 EAL domain CH46_3371 PF00990 Diguanylate cyclase, GGDEF domain CH46_3371 PF08447 PAS fold CH46_3371 PF05231 MASE1 CH46_3371 PF13426 PAS domain CH46_3371 PF08448 PAS fold CH46_3373 PF13847 Methyltransferase domain CH46_3375 PF00313 'Cold-shock' DNA-binding domain CH46_3377 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP CH46_3378 PF00324 Amino acid permease CH46_338 PF02614 Glucuronate isomerase CH46_3381 PF13974 YebO-like protein CH46_3382 PF13996 YobH-like protein CH46_3383 PF10964 Protein of unknown function (DUF2766) CH46_3385 PF12833 Helix-turn-helix domain CH46_3387 PF00664 ABC transporter transmembrane region CH46_3387 PF00005 ABC transporter CH46_339 PF07690 Major Facilitator Superfamily CH46_3390 PF06167 Glucose-regulated metallo-peptidase M90 CH46_3392 PF00356 Bacterial regulatory proteins, lacI family CH46_3392 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH46_3393 PF01695 IstB-like ATP binding protein CH46_3394 PF02796 Helix-turn-helix domain of resolvase CH46_3394 PF00665 Integrase core domain CH46_3395 PF00356 Bacterial regulatory proteins, lacI family CH46_3395 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH46_3396 PF00872 Transposase, Mutator family CH46_3397 PF07883 Cupin domain CH46_3398 PF04962 KduI/IolB family CH46_340 PF00392 Bacterial regulatory proteins, gntR family CH46_340 PF07729 FCD domain CH46_3400 PF06917 Periplasmic pectate lyase CH46_3401 PF00528 Binding-protein-dependent transport system inner membrane component CH46_3402 PF00528 Binding-protein-dependent transport system inner membrane component CH46_3403 PF00005 ABC transporter CH46_3403 PF17912 MalK OB fold domain CH46_3403 PF03459 TOBE domain CH46_3404 PF01547 Bacterial extracellular solute-binding protein CH46_3405 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH46_3406 PF04307 LexA-binding, inner membrane-associated putative hydrolase CH46_3408 PF01510 N-acetylmuramoyl-L-alanine amidase CH46_3409 PF01614 Bacterial transcriptional regulator CH46_3409 PF09339 IclR helix-turn-helix domain CH46_3410 PF14583 Oligogalacturonate lyase CH46_3411 PF07690 Major Facilitator Superfamily CH46_3412 PF02753 Pili assembly chaperone PapD, C-terminal domain CH46_3412 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH46_3414 PF13953 PapC C-terminal domain CH46_3414 PF13954 PapC N-terminal domain CH46_3414 PF00577 Outer membrane usher protein CH46_3415 PF02753 Pili assembly chaperone PapD, C-terminal domain CH46_3415 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH46_3416 PF00419 Fimbrial protein CH46_3417 PF01435 Peptidase family M48 CH46_3419 PF11818 C-terminal domain of tail specific protease (DUF3340) CH46_3419 PF00595 PDZ domain CH46_3419 PF03572 Peptidase family S41 CH46_3419 PF17804 Tail specific protease N-terminal domain CH46_342 PF09335 SNARE associated Golgi protein CH46_3420 PF17516 ProQ C-terminal domain CH46_3420 PF04352 ProQ/FINO family CH46_3421 PF13185 GAF domain CH46_3422 PF04403 Paraquat-inducible protein A CH46_3423 PF02470 MlaD protein CH46_3427 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH46_3427 PF02753 Pili assembly chaperone PapD, C-terminal domain CH46_343 PF13721 SecD export protein N-terminal TM region CH46_3430 PF07351 Protein of unknown function (DUF1480) CH46_3432 PF00665 Integrase core domain CH46_3432 PF02796 Helix-turn-helix domain of resolvase CH46_3433 PF01695 IstB-like ATP binding protein CH46_3439 PF00842 Alanine racemase, C-terminal domain CH46_3439 PF01168 Alanine racemase, N-terminal domain CH46_3442 PF05662 Coiled stalk of trimeric autotransporter adhesin CH46_3442 PF05658 Head domain of trimeric autotransporter adhesin CH46_3442 PF03895 YadA-like membrane anchor domain CH46_3442 PF13018 Extended Signal Peptide of Type V secretion system CH46_3443 PF03895 YadA-like membrane anchor domain CH46_3443 PF05658 Head domain of trimeric autotransporter adhesin CH46_3443 PF05662 Coiled stalk of trimeric autotransporter adhesin CH46_3443 PF13018 Extended Signal Peptide of Type V secretion system CH46_3444 PF01510 N-acetylmuramoyl-L-alanine amidase CH46_3445 PF04344 Chemotaxis phosphatase, CheZ CH46_3446 PF00072 Response regulator receiver domain CH46_3447 PF00072 Response regulator receiver domain CH46_3447 PF01339 CheB methylesterase CH46_3448 PF01739 CheR methyltransferase, SAM binding domain CH46_3448 PF03705 CheR methyltransferase, all-alpha domain CH46_345 PF05957 Bacterial protein of unknown function (DUF883) CH46_3451 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH46_3451 PF00672 HAMP domain CH46_3451 PF02203 Tar ligand binding domain homologue CH46_3454 PF12951 Passenger-associated-transport-repeat CH46_3455 PF08348 YheO-like PAS domain CH46_3455 PF13309 HTH domain CH46_3457 PF01042 Endoribonuclease L-PSP CH46_3458 PF07690 Major Facilitator Superfamily CH46_3459 PF01584 CheW-like domain CH46_346 PF07332 Putative Actinobacterial Holin-X, holin superfamily III CH46_3460 PF01627 Hpt domain CH46_3460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_3460 PF02895 Signal transducing histidine kinase, homodimeric domain CH46_3460 PF01584 CheW-like domain CH46_3460 PF09078 CheY binding CH46_3461 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH46_3461 PF00691 OmpA family CH46_3462 PF01618 MotA/TolQ/ExbB proton channel family CH46_3463 PF05280 Flagellar transcriptional activator (FlhC) CH46_3464 PF05247 Flagellar transcriptional activator (FlhD) CH46_3465 PF00690 Cation transporter/ATPase, N-terminus CH46_3465 PF00689 Cation transporting ATPase, C-terminus CH46_3466 PF02308 MgtC family CH46_3467 PF02203 Tar ligand binding domain homologue CH46_3467 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH46_3467 PF00672 HAMP domain CH46_3468 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH46_3468 PF02203 Tar ligand binding domain homologue CH46_3468 PF00672 HAMP domain CH46_3469 PF10781 Dextransucrase DSRB CH46_3470 PF00313 'Cold-shock' DNA-binding domain CH46_3471 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CH46_3471 PF02837 Glycosyl hydrolases family 2, sugar binding domain CH46_3471 PF02929 Beta galactosidase small chain CH46_3471 PF16353 Domain of unknown function(DUF4981) CH46_3471 PF00703 Glycosyl hydrolases family 2 CH46_3472 PF16197 Ketoacyl-synthetase C-terminal extension CH46_3472 PF14765 Polyketide synthase dehydratase CH46_3472 PF00550 Phosphopantetheine attachment site CH46_3472 PF00107 Zinc-binding dehydrogenase CH46_3472 PF00109 Beta-ketoacyl synthase, N-terminal domain CH46_3472 PF08240 Alcohol dehydrogenase GroES-like domain CH46_3472 PF08659 KR domain CH46_3472 PF02801 Beta-ketoacyl synthase, C-terminal domain CH46_3472 PF00698 Acyl transferase domain CH46_3473 PF10777 Inner membrane protein YlaC CH46_3474 PF01037 Lrp/AsnC ligand binding domain CH46_3474 PF13404 AsnC-type helix-turn-helix domain CH46_3476 PF14001 YdfZ protein CH46_3477 PF00328 Histidine phosphatase superfamily (branch 2) CH46_3479 PF01638 HxlR-like helix-turn-helix CH46_348 PF07681 DoxX CH46_3480 PF05368 NmrA-like family CH46_3481 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH46_3481 PF08447 PAS fold CH46_3483 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH46_3483 PF00356 Bacterial regulatory proteins, lacI family CH46_3484 PF00180 Isocitrate/isopropylmalate dehydrogenase CH46_3485 PF00849 RNA pseudouridylate synthase CH46_3486 PF00293 NUDIX domain CH46_3488 PF04356 Protein of unknown function (DUF489) CH46_3489 PF00206 Lyase CH46_3489 PF08328 Adenylosuccinate lyase C-terminal CH46_349 PF13409 Glutathione S-transferase, N-terminal domain CH46_3491 PF00072 Response regulator receiver domain CH46_3491 PF00486 Transcriptional regulatory protein, C terminal CH46_3492 PF08918 PhoQ Sensor CH46_3492 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_3493 PF08007 Cupin superfamily protein CH46_3494 PF07687 Peptidase dimerisation domain CH46_3494 PF01546 Peptidase family M20/M25/M40 CH46_3495 PF02146 Sir2 family CH46_3496 PF00480 ROK family CH46_3497 PF02687 FtsX-like permease family CH46_3497 PF12704 MacB-like periplasmic core domain CH46_3498 PF00005 ABC transporter CH46_3499 PF12704 MacB-like periplasmic core domain CH46_3499 PF02687 FtsX-like permease family CH46_350 PF02796 Helix-turn-helix domain of resolvase CH46_350 PF00665 Integrase core domain CH46_3500 PF03461 TRCF domain CH46_3500 PF00271 Helicase conserved C-terminal domain CH46_3500 PF00270 DEAD/DEAH box helicase CH46_3500 PF02559 CarD-like/TRCF domain CH46_3500 PF17757 UvrB interaction domain CH46_3501 PF05433 Glycine zipper 2TM domain CH46_3502 PF02796 Helix-turn-helix domain of resolvase CH46_3502 PF00665 Integrase core domain CH46_3503 PF01695 IstB-like ATP binding protein CH46_3504 PF00872 Transposase, Mutator family CH46_3507 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH46_3508 PF05728 Uncharacterised protein family (UPF0227) CH46_3509 PF00933 Glycosyl hydrolase family 3 N terminal domain CH46_351 PF01695 IstB-like ATP binding protein CH46_3510 PF01636 Phosphotransferase enzyme family CH46_3511 PF13036 Peptidoglycan-synthase activator LpoB CH46_3511 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH46_3512 PF07233 Protein of unknown function (DUF1425) CH46_3513 PF01230 HIT domain CH46_3514 PF08501 Shikimate dehydrogenase substrate binding domain CH46_3515 PF01797 Transposase IS200 like CH46_3516 PF02378 Phosphotransferase system, EIIC CH46_3516 PF00367 phosphotransferase system, EIIB CH46_3517 PF01026 TatD related DNase CH46_3518 PF09115 DNA polymerase III, delta subunit, C terminal CH46_3519 PF02223 Thymidylate kinase CH46_352 PF00293 NUDIX domain CH46_3520 PF02618 YceG-like family CH46_3521 PF01063 Amino-transferase class IV CH46_3522 PF01797 Transposase IS200 like CH46_3523 PF02801 Beta-ketoacyl synthase, C-terminal domain CH46_3523 PF00109 Beta-ketoacyl synthase, N-terminal domain CH46_3524 PF00550 Phosphopantetheine attachment site CH46_3526 PF00698 Acyl transferase domain CH46_3527 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH46_3527 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH46_3528 PF02504 Fatty acid synthesis protein CH46_3529 PF01783 Ribosomal L32p protein family CH46_353 PF07516 SecA Wing and Scaffold domain CH46_353 PF01043 SecA preprotein cross-linking domain CH46_353 PF07517 SecA DEAD-like domain CH46_353 PF02810 SEC-C motif CH46_3530 PF02620 Large ribosomal RNA subunit accumulation protein YceD CH46_3531 PF02545 Maf-like protein CH46_3532 PF01797 Transposase IS200 like CH46_3533 PF00849 RNA pseudouridylate synthase CH46_3533 PF01479 S4 domain CH46_3534 PF12111 Polyribonucleotide phosphorylase C terminal CH46_3534 PF10150 Ribonuclease E/G family CH46_3534 PF00575 S1 RNA binding domain CH46_3535 PF00872 Transposase, Mutator family CH46_3536 PF03992 Antibiotic biosynthesis monooxygenase CH46_3537 PF01979 Amidohydrolase family CH46_3538 PF06183 DinI-like family CH46_3539 PF00872 Transposase, Mutator family CH46_354 PF06558 Secretion monitor precursor protein (SecM) CH46_3540 PF13991 BssS protein family CH46_3541 PF01306 LacY proton/sugar symporter CH46_3542 PF16875 Glycosyl hydrolase family 36 N-terminal domain CH46_3542 PF16874 Glycosyl hydrolase family 36 C-terminal domain CH46_3545 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CH46_3545 PF01648 4'-phosphopantetheinyl transferase superfamily CH46_3546 PF03480 Bacterial extracellular solute-binding protein, family 7 CH46_3548 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH46_3549 PF00196 Bacterial regulatory proteins, luxR family CH46_3549 PF00072 Response regulator receiver domain CH46_3551 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CH46_3553 PF01522 Polysaccharide deacetylase CH46_3555 PF01554 MatE CH46_3556 PF00764 Arginosuccinate synthase CH46_3557 PF01070 FMN-dependent dehydrogenase CH46_3559 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH46_3559 PF13378 Enolase C-terminal domain-like CH46_356 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CH46_3560 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH46_3562 PF04134 Protein of unknown function, DUF393 CH46_3563 PF07690 Major Facilitator Superfamily CH46_3564 PF00872 Transposase, Mutator family CH46_3565 PF11924 Inverse autotransporter, beta-domain CH46_3565 PF02369 Bacterial Ig-like domain (group 1) CH46_3565 PF09134 Invasin, domain 3 CH46_3566 PF04363 Protein of unknown function (DUF496) CH46_3568 PF00929 Exonuclease CH46_3568 PF08411 Exonuclease C-terminal CH46_3569 PF13520 Amino acid permease CH46_357 PF12327 FtsZ family, C-terminal domain CH46_357 PF00091 Tubulin/FtsZ family, GTPase domain CH46_3571 PF00465 Iron-containing alcohol dehydrogenase CH46_3572 PF00005 ABC transporter CH46_3573 PF00005 ABC transporter CH46_3574 PF02653 Branched-chain amino acid transport system / permease component CH46_3576 PF01370 NAD dependent epimerase/dehydratase family CH46_3577 PF01634 ATP phosphoribosyltransferase CH46_3577 PF08029 HisG, C-terminal domain CH46_3578 PF00815 Histidinol dehydrogenase CH46_3579 PF00155 Aminotransferase class I and II CH46_358 PF02491 SHS2 domain inserted in FTSA CH46_3580 PF00475 Imidazoleglycerol-phosphate dehydratase CH46_3581 PF00117 Glutamine amidotransferase class-I CH46_3582 PF00977 Histidine biosynthesis protein CH46_3583 PF00977 Histidine biosynthesis protein CH46_3584 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CH46_3584 PF01502 Phosphoribosyl-AMP cyclohydrolase CH46_3585 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CH46_3585 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH46_3586 PF00483 Nucleotidyl transferase CH46_3587 PF00483 Nucleotidyl transferase CH46_3588 PF06276 Ferric iron reductase FhuF-like transporter CH46_3588 PF04183 IucA / IucC family CH46_3589 PF07715 TonB-dependent Receptor Plug Domain CH46_3589 PF07660 Secretin and TonB N terminus short domain CH46_3589 PF00593 TonB dependent receptor CH46_359 PF03799 Cell division protein FtsQ CH46_359 PF08478 POTRA domain, FtsQ-type CH46_3590 PF01497 Periplasmic binding protein CH46_3591 PF01032 FecCD transport family CH46_3592 PF01032 FecCD transport family CH46_3593 PF00005 ABC transporter CH46_3594 PF06276 Ferric iron reductase FhuF-like transporter CH46_3594 PF04183 IucA / IucC family CH46_3596 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CH46_3597 PF00282 Pyridoxal-dependent decarboxylase conserved domain CH46_3598 PF06276 Ferric iron reductase FhuF-like transporter CH46_3598 PF11575 FhuF 2Fe-2S C-terminal domain CH46_3599 PF03741 Integral membrane protein TerC family CH46_3599 PF03471 Transporter associated domain CH46_3599 PF00571 CBS domain CH46_36 PF15723 Motility quorum-sensing regulator, toxin of MqsA CH46_360 PF07478 D-ala D-ala ligase C-terminus CH46_360 PF01820 D-ala D-ala ligase N-terminus CH46_3600 PF05170 AsmA family CH46_3601 PF00692 dUTPase CH46_3602 PF00485 Phosphoribulokinase / Uridine kinase family CH46_3603 PF10609 NUBPL iron-transfer P-loop NTPase CH46_3604 PF01588 Putative tRNA binding domain CH46_3604 PF09334 tRNA synthetases class I (M) CH46_3605 PF01797 Transposase IS200 like CH46_3606 PF02796 Helix-turn-helix domain of resolvase CH46_3606 PF00665 Integrase core domain CH46_3607 PF01695 IstB-like ATP binding protein CH46_361 PF02875 Mur ligase family, glutamate ligase domain CH46_361 PF08245 Mur ligase middle domain CH46_361 PF01225 Mur ligase family, catalytic domain CH46_3611 PF07690 Major Facilitator Superfamily CH46_3612 PF03788 LrgA family CH46_3613 PF04172 LrgB-like family CH46_3614 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CH46_3614 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH46_3615 PF00390 Malic enzyme, N-terminal domain CH46_3615 PF03949 Malic enzyme, NAD binding domain CH46_3616 PF02698 DUF218 domain CH46_3617 PF02653 Branched-chain amino acid transport system / permease component CH46_3618 PF00005 ABC transporter CH46_3619 PF13407 Periplasmic binding protein domain CH46_362 PF03033 Glycosyltransferase family 28 N-terminal domain CH46_362 PF04101 Glycosyltransferase family 28 C-terminal domain CH46_3620 PF04235 Protein of unknown function (DUF418) CH46_3621 PF01227 GTP cyclohydrolase I CH46_3622 PF06779 Uncharacterised MFS-type transporter YbfB CH46_3623 PF03466 LysR substrate binding domain CH46_3623 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_3624 PF00107 Zinc-binding dehydrogenase CH46_3624 PF08240 Alcohol dehydrogenase GroES-like domain CH46_3625 PF00756 Putative esterase CH46_3628 PF13533 Biotin-lipoyl like CH46_3629 PF00005 ABC transporter CH46_363 PF01098 Cell cycle protein CH46_3631 PF00994 Probable molybdopterin binding domain CH46_3631 PF03453 MoeA N-terminal region (domain I and II) CH46_3631 PF03454 MoeA C-terminal region (domain IV) CH46_3632 PF00899 ThiF family CH46_3633 PF00872 Transposase, Mutator family CH46_3635 PF12848 ABC transporter CH46_3635 PF00005 ABC transporter CH46_364 PF02875 Mur ligase family, glutamate ligase domain CH46_364 PF08245 Mur ligase middle domain CH46_365 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CH46_365 PF00953 Glycosyl transferase family 4 CH46_3654 PF00004 ATPase family associated with various cellular activities (AAA) CH46_3654 PF07724 AAA domain (Cdc48 subfamily) CH46_3654 PF17871 AAA lid domain CH46_3654 PF10431 C-terminal, D2-small domain, of ClpB protein CH46_3656 PF05736 OprF membrane domain CH46_3656 PF00691 OmpA family CH46_366 PF02875 Mur ligase family, glutamate ligase domain CH46_366 PF01225 Mur ligase family, catalytic domain CH46_366 PF08245 Mur ligase middle domain CH46_3662 PF00698 Acyl transferase domain CH46_3663 PF00550 Phosphopantetheine attachment site CH46_3666 PF00378 Enoyl-CoA hydratase/isomerase CH46_3668 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal CH46_3668 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal CH46_367 PF01225 Mur ligase family, catalytic domain CH46_367 PF08245 Mur ligase middle domain CH46_367 PF02875 Mur ligase family, glutamate ligase domain CH46_3670 PF00109 Beta-ketoacyl synthase, N-terminal domain CH46_3670 PF02801 Beta-ketoacyl synthase, C-terminal domain CH46_3671 PF07977 FabA-like domain CH46_3674 PF01565 FAD binding domain CH46_3674 PF08031 Berberine and berberine like CH46_3678 PF13610 DDE domain CH46_368 PF03717 Penicillin-binding Protein dimerisation domain CH46_368 PF00905 Penicillin binding protein transpeptidase domain CH46_3680 PF04358 DsrC like protein CH46_3681 PF00708 Acylphosphatase CH46_3682 PF17785 PUA-like domain CH46_3682 PF10672 S-adenosylmethionine-dependent methyltransferase CH46_3683 PF08755 Hemimethylated DNA-binding protein YccV like CH46_3684 PF13380 CoA binding domain CH46_3685 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CH46_3686 PF02142 MGS-like domain CH46_3687 PF00580 UvrD/REP helicase N-terminal domain CH46_3687 PF12462 DNA helicase IV / RNA helicase N terminal CH46_3687 PF13361 UvrD-like helicase C-terminal domain CH46_3688 PF03733 Inner membrane component domain CH46_3689 PF12805 FUSC-like inner membrane protein yccS CH46_369 PF04999 Cell division protein FtsL CH46_3690 PF04993 TfoX N-terminal domain CH46_3690 PF04994 TfoX C-terminal domain CH46_3691 PF03846 Cell division inhibitor SulA CH46_3692 PF01389 OmpA-like transmembrane domain CH46_3692 PF00691 OmpA family CH46_3693 PF01797 Transposase IS200 like CH46_3694 PF06303 MatP N-terminal domain CH46_3694 PF17414 MatP C-terminal ribbon-helix-helix domain CH46_3695 PF13654 AAA domain CH46_3695 PF05362 Lon protease (S16) C-terminal proteolytic domain CH46_3696 PF07977 FabA-like domain CH46_3698 PF00109 Beta-ketoacyl synthase, N-terminal domain CH46_3698 PF02801 Beta-ketoacyl synthase, C-terminal domain CH46_3699 PF02796 Helix-turn-helix domain of resolvase CH46_3699 PF00665 Integrase core domain CH46_37 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA CH46_370 PF01795 MraW methylase family CH46_3701 PF01695 IstB-like ATP binding protein CH46_3702 PF01695 IstB-like ATP binding protein CH46_3703 PF00109 Beta-ketoacyl synthase, N-terminal domain CH46_3703 PF02801 Beta-ketoacyl synthase, C-terminal domain CH46_3704 PF01797 Transposase IS200 like CH46_3705 PF03886 ABC-type transport auxiliary lipoprotein component CH46_3706 PF02470 MlaD protein CH46_3707 PF04403 Paraquat-inducible protein A CH46_3708 PF00005 ABC transporter CH46_3708 PF16326 ABC transporter C-terminal domain CH46_3708 PF12848 ABC transporter CH46_3709 PF02926 THUMP domain CH46_3709 PF01170 Putative RNA methylase family UPF0020 CH46_3709 PF10672 S-adenosylmethionine-dependent methyltransferase CH46_371 PF02381 MraZ protein, putative antitoxin-like CH46_3710 PF03476 MOSC N-terminal beta barrel domain CH46_3710 PF03473 MOSC domain CH46_3710 PF00111 2Fe-2S iron-sulfur cluster binding domain CH46_3711 PF07126 Cell-division protein ZapC CH46_3712 PF01180 Dihydroorotate dehydrogenase CH46_3713 PF11940 Domain of unknown function (DUF3458) Ig-like fold CH46_3713 PF01433 Peptidase family M1 domain CH46_3713 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CH46_3714 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CH46_3714 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CH46_3715 PF01336 OB-fold nucleic acid binding domain CH46_3715 PF00152 tRNA synthetases class II (D, K and N) CH46_3716 PF00267 Gram-negative porin CH46_3717 PF00155 Aminotransferase class I and II CH46_3718 PF00753 Metallo-beta-lactamase superfamily CH46_3719 PF05951 Bacterial protein of unknown function (DUF882) CH46_372 PF06610 L-alanine exporter CH46_3720 PF03734 L,D-transpeptidase catalytic domain CH46_3720 PF01471 Putative peptidoglycan binding domain CH46_3721 PF01797 Transposase IS200 like CH46_3722 PF16330 MukB hinge domain CH46_3722 PF04310 MukB N-terminal CH46_3723 PF04288 MukE-like family CH46_3724 PF17192 MukF middle domain CH46_3724 PF17193 MukF C-terminal domain CH46_3724 PF03882 MukF winged-helix domain CH46_3726 PF01636 Phosphotransferase enzyme family CH46_3727 PF02348 Cytidylyltransferase CH46_3728 PF03966 Trm112p-like protein CH46_3729 PF00313 'Cold-shock' DNA-binding domain CH46_373 PF00356 Bacterial regulatory proteins, lacI family CH46_373 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH46_3730 PF07063 Domain of unknown function (DUF1338) CH46_3731 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CH46_3732 PF00005 ABC transporter CH46_3732 PF00664 ABC transporter transmembrane region CH46_3733 PF00753 Metallo-beta-lactamase superfamily CH46_3733 PF03772 Competence protein CH46_3734 PF00216 Bacterial DNA-binding protein CH46_3736 PF00575 S1 RNA binding domain CH46_3737 PF02224 Cytidylate kinase CH46_3738 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH46_3739 PF00266 Aminotransferase class-V CH46_374 PF01797 Transposase IS200 like CH46_3741 PF03895 YadA-like membrane anchor domain CH46_3741 PF13018 Extended Signal Peptide of Type V secretion system CH46_3741 PF05662 Coiled stalk of trimeric autotransporter adhesin CH46_3741 PF05658 Head domain of trimeric autotransporter adhesin CH46_3741 PF03895 YadA-like membrane anchor domain CH46_3741 PF05658 Head domain of trimeric autotransporter adhesin CH46_3741 PF13018 Extended Signal Peptide of Type V secretion system CH46_3741 PF05662 Coiled stalk of trimeric autotransporter adhesin CH46_3742 PF00710 Asparaginase, N-terminal CH46_3742 PF17763 Glutaminase/Asparaginase C-terminal domain CH46_3743 PF18381 YcaO cyclodehydratase C-terminal domain CH46_3743 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CH46_3744 PF01226 Formate/nitrite transporter CH46_3745 PF02901 Pyruvate formate lyase-like CH46_3745 PF01228 Glycine radical CH46_3747 PF04055 Radical SAM superfamily CH46_3748 PF07690 Major Facilitator Superfamily CH46_3749 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH46_3749 PF02403 Seryl-tRNA synthetase N-terminal domain CH46_375 PF10369 Small subunit of acetolactate synthase CH46_3750 PF16193 AAA C-terminal domain CH46_3750 PF00004 ATPase family associated with various cellular activities (AAA) CH46_3750 PF12002 MgsA AAA+ ATPase C terminal CH46_3752 PF03548 Outer membrane lipoprotein carrier protein LolA CH46_3753 PF09397 Ftsk gamma domain CH46_3753 PF17854 FtsK alpha domain CH46_3753 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CH46_3753 PF01580 FtsK/SpoIIIE family CH46_3754 PF01037 Lrp/AsnC ligand binding domain CH46_3755 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH46_3756 PF00005 ABC transporter CH46_3756 PF00664 ABC transporter transmembrane region CH46_3757 PF00664 ABC transporter transmembrane region CH46_3757 PF00005 ABC transporter CH46_3758 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CH46_3759 PF01176 Translation initiation factor 1A / IF-1 CH46_376 PF00205 Thiamine pyrophosphate enzyme, central domain CH46_376 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH46_376 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH46_3760 PF01797 Transposase IS200 like CH46_3761 PF07724 AAA domain (Cdc48 subfamily) CH46_3761 PF10431 C-terminal, D2-small domain, of ClpB protein CH46_3761 PF00004 ATPase family associated with various cellular activities (AAA) CH46_3761 PF02861 Clp amino terminal domain, pathogenicity island component CH46_3761 PF17871 AAA lid domain CH46_3762 PF02617 ATP-dependent Clp protease adaptor protein ClpS CH46_3763 PF00313 'Cold-shock' DNA-binding domain CH46_3764 PF02687 FtsX-like permease family CH46_3764 PF00005 ABC transporter CH46_3764 PF12704 MacB-like periplasmic core domain CH46_3765 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH46_3766 PF04393 Protein of unknown function (DUF535) CH46_3767 PF11398 Protein of unknown function (DUF2813) CH46_3768 PF03956 Lysine exporter LysO CH46_3769 PF03063 Prismane/CO dehydrogenase family CH46_377 PF00501 AMP-binding enzyme CH46_3770 PF00111 2Fe-2S iron-sulfur cluster binding domain CH46_3770 PF00175 Oxidoreductase NAD-binding domain CH46_3770 PF00970 Oxidoreductase FAD-binding domain CH46_3771 PF00205 Thiamine pyrophosphate enzyme, central domain CH46_3771 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH46_3771 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH46_3772 PF01212 Beta-eliminating lyase CH46_3773 PF11066 Protein of unknown function (DUF2867) CH46_3773 PF13460 NAD(P)H-binding CH46_3774 PF01370 NAD dependent epimerase/dehydratase family CH46_3775 PF12883 Protein of unknown function (DUF3828) CH46_3776 PF01817 Chorismate mutase type II CH46_3777 PF00005 ABC transporter CH46_3778 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH46_3779 PF00528 Binding-protein-dependent transport system inner membrane component CH46_378 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_378 PF03466 LysR substrate binding domain CH46_3780 PF00528 Binding-protein-dependent transport system inner membrane component CH46_3781 PF00892 EamA-like transporter family CH46_3782 PF10100 Staphylopine dehydrogenase CH46_3783 PF03059 Nicotianamine synthase protein CH46_3784 PF00005 ABC transporter CH46_3785 PF01032 FecCD transport family CH46_3790 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH46_3791 PF01695 IstB-like ATP binding protein CH46_3792 PF00665 Integrase core domain CH46_3792 PF02796 Helix-turn-helix domain of resolvase CH46_3793 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH46_3794 PF05958 tRNA (Uracil-5-)-methyltransferase CH46_3795 PF10767 Protein of unknown function (DUF2593) CH46_3796 PF00528 Binding-protein-dependent transport system inner membrane component CH46_3797 PF00528 Binding-protein-dependent transport system inner membrane component CH46_3798 PF08402 TOBE domain CH46_3798 PF00005 ABC transporter CH46_3799 PF13416 Bacterial extracellular solute-binding protein CH46_380 PF01797 Transposase IS200 like CH46_3800 PF10722 Putative bacterial sensory transduction regulator CH46_3801 PF07214 Protein of unknown function (DUF1418) CH46_3802 PF00462 Glutaredoxin CH46_3803 PF02080 TrkA-C domain CH46_3803 PF06826 Predicted Permease Membrane Region CH46_3805 PF01569 PAP2 superfamily CH46_3806 PF01791 DeoC/LacD family aldolase CH46_3807 PF08220 DeoR-like helix-turn-helix domain CH46_3807 PF00455 DeoR C terminal sensor domain CH46_3809 PF07943 Penicillin-binding protein 5, C-terminal domain CH46_3809 PF00768 D-alanyl-D-alanine carboxypeptidase CH46_381 PF08502 LeuA allosteric (dimerisation) domain CH46_381 PF00682 HMGL-like CH46_3810 PF00528 Binding-protein-dependent transport system inner membrane component CH46_3811 PF09383 NIL domain CH46_3811 PF00005 ABC transporter CH46_3812 PF03180 NLPA lipoprotein CH46_3815 PF13417 Glutathione S-transferase, N-terminal domain CH46_3815 PF00043 Glutathione S-transferase, C-terminal domain CH46_3816 PF00593 TonB dependent receptor CH46_3816 PF07715 TonB-dependent Receptor Plug Domain CH46_3817 PF00005 ABC transporter CH46_3818 PF01032 FecCD transport family CH46_382 PF00180 Isocitrate/isopropylmalate dehydrogenase CH46_3820 PF00324 Amino acid permease CH46_3822 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_3822 PF03466 LysR substrate binding domain CH46_3823 PF03601 Conserved hypothetical protein 698 CH46_3824 PF01261 Xylose isomerase-like TIM barrel CH46_3825 PF13954 PapC N-terminal domain CH46_3825 PF13953 PapC C-terminal domain CH46_3825 PF00577 Outer membrane usher protein CH46_3826 PF02753 Pili assembly chaperone PapD, C-terminal domain CH46_3826 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH46_3828 PF17550 Family of unknown function CH46_3829 PF00486 Transcriptional regulatory protein, C terminal CH46_383 PF00330 Aconitase family (aconitate hydratase) CH46_3830 PF02378 Phosphotransferase system, EIIC CH46_3830 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH46_3831 PF00294 pfkB family carbohydrate kinase CH46_3832 PF00381 PTS HPr component phosphorylation site CH46_3832 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH46_3833 PF00293 NUDIX domain CH46_3834 PF02653 Branched-chain amino acid transport system / permease component CH46_3835 PF00005 ABC transporter CH46_3837 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH46_3838 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH46_3838 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH46_3839 PF00171 Aldehyde dehydrogenase family CH46_384 PF00694 Aconitase C-terminal domain CH46_3841 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH46_3841 PF01842 ACT domain CH46_3841 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH46_3843 PF03692 Putative zinc- or iron-chelating domain CH46_3844 PF03222 Tryptophan/tyrosine permease family CH46_3845 PF01132 Elongation factor P (EF-P) OB domain CH46_3845 PF08207 Elongation factor P (EF-P) KOW-like domain CH46_3845 PF09285 Elongation factor P, C-terminal CH46_3846 PF03786 D-mannonate dehydratase (UxuA) CH46_3847 PF01232 Mannitol dehydrogenase Rossmann domain CH46_3847 PF08125 Mannitol dehydrogenase C-terminal domain CH46_3848 PF00392 Bacterial regulatory proteins, gntR family CH46_3848 PF07729 FCD domain CH46_385 PF07690 Major Facilitator Superfamily CH46_3850 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH46_3850 PF07683 Cobalamin synthesis protein cobW C-terminal domain CH46_3851 PF01569 PAP2 superfamily CH46_3852 PF00877 NlpC/P60 family CH46_3854 PF12792 CSS motif domain associated with EAL CH46_3854 PF00563 EAL domain CH46_3855 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH46_3856 PF00528 Binding-protein-dependent transport system inner membrane component CH46_3857 PF12911 N-terminal TM domain of oligopeptide transport permease C CH46_3857 PF00528 Binding-protein-dependent transport system inner membrane component CH46_3858 PF00005 ABC transporter CH46_3858 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH46_3859 PF13989 YejG-like protein CH46_386 PF00665 Integrase core domain CH46_386 PF02796 Helix-turn-helix domain of resolvase CH46_3860 PF07690 Major Facilitator Superfamily CH46_3861 PF00849 RNA pseudouridylate synthase CH46_3861 PF01479 S4 domain CH46_3862 PF00271 Helicase conserved C-terminal domain CH46_3862 PF04851 Type III restriction enzyme, res subunit CH46_3863 PF01386 Ribosomal L25p family CH46_3864 PF01797 Transposase IS200 like CH46_3865 PF04245 37-kD nucleoid-associated bacterial protein CH46_3866 PF07208 Protein of unknown function (DUF1414) CH46_3867 PF11893 Domain of unknown function (DUF3413) CH46_3867 PF00884 Sulfatase CH46_387 PF01695 IstB-like ATP binding protein CH46_3870 PF05638 Type VI secretion system effector, Hcp CH46_3874 PF00232 Glycosyl hydrolase family 1 CH46_3876 PF01418 Helix-turn-helix domain, rpiR family CH46_3876 PF01380 SIS domain CH46_3877 PF07484 Phage Tail Collar Domain CH46_388 PF07690 Major Facilitator Superfamily CH46_3880 PF04865 Baseplate J-like protein CH46_3888 PF17482 Phage tail sheath C-terminal domain CH46_3888 PF04984 Phage tail sheath protein subtilisin-like domain CH46_389 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH46_389 PF12793 Sugar transport-related sRNA regulator N-term CH46_3892 PF01261 Xylose isomerase-like TIM barrel CH46_3893 PF08220 DeoR-like helix-turn-helix domain CH46_3893 PF00455 DeoR C terminal sensor domain CH46_3894 PF00596 Class II Aldolase and Adducin N-terminal domain CH46_3895 PF07005 Sugar-binding N-terminal domain CH46_3895 PF17042 Nucleotide-binding C-terminal domain CH46_3896 PF06530 Phage antitermination protein Q CH46_3897 PF01381 Helix-turn-helix CH46_3897 PF00717 Peptidase S24-like CH46_3898 PF06183 DinI-like family CH46_3900 PF01278 Omptin family CH46_3901 PF02743 Cache domain CH46_3901 PF00672 HAMP domain CH46_3901 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH46_3902 PF12706 Beta-lactamase superfamily domain CH46_3904 PF00144 Beta-lactamase CH46_3907 PF01797 Transposase IS200 like CH46_3908 PF01797 Transposase IS200 like CH46_3909 PF00267 Gram-negative porin CH46_3911 PF07690 Major Facilitator Superfamily CH46_3912 PF16359 RcsD-ABL domain CH46_3912 PF01627 Hpt domain CH46_3912 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_3913 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_3913 PF16359 RcsD-ABL domain CH46_3913 PF01627 Hpt domain CH46_3914 PF00196 Bacterial regulatory proteins, luxR family CH46_3914 PF00072 Response regulator receiver domain CH46_3915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_3915 PF00512 His Kinase A (phospho-acceptor) domain CH46_3915 PF00072 Response regulator receiver domain CH46_3915 PF09456 RcsC Alpha-Beta-Loop (ABL) CH46_3916 PF00521 DNA gyrase/topoisomerase IV, subunit A CH46_3916 PF03989 DNA gyrase C-terminal domain, beta-propeller CH46_3918 PF00317 Ribonucleotide reductase, all-alpha domain CH46_3918 PF02867 Ribonucleotide reductase, barrel domain CH46_3918 PF03477 ATP cone domain CH46_3919 PF00268 Ribonucleotide reductase, small chain CH46_392 PF00528 Binding-protein-dependent transport system inner membrane component CH46_3920 PF00111 2Fe-2S iron-sulfur cluster binding domain CH46_3921 PF03974 Ecotin CH46_3922 PF00994 Probable molybdopterin binding domain CH46_3923 PF03222 Tryptophan/tyrosine permease family CH46_3924 PF07437 YfaZ precursor CH46_3925 PF06628 Catalase-related immune-responsive CH46_3925 PF00199 Catalase CH46_3926 PF13307 Helicase C-terminal domain CH46_3926 PF06733 DEAD_2 CH46_3927 PF00267 Gram-negative porin CH46_3928 PF00892 EamA-like transporter family CH46_393 PF00005 ABC transporter CH46_3930 PF01276 Orn/Lys/Arg decarboxylase, major domain CH46_3930 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH46_3930 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH46_3931 PF13520 Amino acid permease CH46_3932 PF00528 Binding-protein-dependent transport system inner membrane component CH46_3933 PF00005 ABC transporter CH46_3934 PF00528 Binding-protein-dependent transport system inner membrane component CH46_3937 PF00581 Rhodanese-like domain CH46_394 PF09335 SNARE associated Golgi protein CH46_3940 PF00005 ABC transporter CH46_3941 PF00005 ABC transporter CH46_3942 PF02653 Branched-chain amino acid transport system / permease component CH46_3943 PF02653 Branched-chain amino acid transport system / permease component CH46_3944 PF13188 PAS domain CH46_3944 PF02954 Bacterial regulatory protein, Fis family CH46_3944 PF00158 Sigma-54 interaction domain CH46_3945 PF07308 Protein of unknown function (DUF1456) CH46_3946 PF00528 Binding-protein-dependent transport system inner membrane component CH46_3947 PF00528 Binding-protein-dependent transport system inner membrane component CH46_3949 PF00005 ABC transporter CH46_395 PF03104 DNA polymerase family B, exonuclease domain CH46_395 PF00136 DNA polymerase family B CH46_3950 PF04226 Transglycosylase associated protein CH46_3952 PF01844 HNH endonuclease CH46_3953 PF01928 CYTH domain CH46_3954 PF01565 FAD binding domain CH46_3954 PF09330 D-lactate dehydrogenase, membrane binding CH46_3955 PF00768 D-alanyl-D-alanine carboxypeptidase CH46_3957 PF01207 Dihydrouridine synthase (Dus) CH46_3959 PF01797 Transposase IS200 like CH46_396 PF12137 RNA polymerase recycling family C-terminal CH46_396 PF00176 SNF2 family N-terminal domain CH46_396 PF18339 RapA N-terminal Tudor like domain 1 CH46_396 PF18337 RapA N-terminal Tudor like domain CH46_396 PF00271 Helicase conserved C-terminal domain CH46_3960 PF03825 Nucleoside H+ symporter CH46_3961 PF01048 Phosphorylase superfamily CH46_3963 PF03466 LysR substrate binding domain CH46_3963 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_3964 PF02028 BCCT, betaine/carnitine/choline family transporter CH46_3965 PF00440 Bacterial regulatory proteins, tetR family CH46_3965 PF13977 BetI-type transcriptional repressor, C-terminal CH46_3966 PF00171 Aldehyde dehydrogenase family CH46_3967 PF05199 GMC oxidoreductase CH46_3967 PF00732 GMC oxidoreductase CH46_3968 PF01797 Transposase IS200 like CH46_3969 PF01027 Inhibitor of apoptosis-promoting Bax1 CH46_3970 PF02391 MoaE protein CH46_3971 PF02597 ThiS family CH46_3972 PF01967 MoaC family CH46_3973 PF06463 Molybdenum Cofactor Synthesis C CH46_3973 PF04055 Radical SAM superfamily CH46_3975 PF01933 Uncharacterised protein family UPF0052 CH46_3976 PF09905 DNA-binding protein VF530 CH46_3977 PF17757 UvrB interaction domain CH46_3977 PF12344 Ultra-violet resistance protein B CH46_3977 PF02151 UvrB/uvrC motif CH46_3977 PF04851 Type III restriction enzyme, res subunit CH46_3977 PF00271 Helicase conserved C-terminal domain CH46_3980 PF08241 Methyltransferase domain CH46_3981 PF00155 Aminotransferase class I and II CH46_3982 PF04055 Radical SAM superfamily CH46_3982 PF06968 Biotin and Thiamin Synthesis associated domain CH46_3983 PF00202 Aminotransferase class-III CH46_3984 PF10282 Lactonase, 7-bladed beta-propeller CH46_3986 PF00005 ABC transporter CH46_3986 PF03459 TOBE domain CH46_3987 PF00528 Binding-protein-dependent transport system inner membrane component CH46_3989 PF10766 Multidrug efflux pump-associated protein AcrZ CH46_399 PF05736 OprF membrane domain CH46_399 PF00691 OmpA family CH46_3990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_3990 PF03459 TOBE domain CH46_3991 PF00005 ABC transporter CH46_3994 PF16363 GDP-mannose 4,6 dehydratase CH46_3995 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CH46_3995 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CH46_3996 PF10509 Galactokinase galactose-binding signature CH46_3996 PF08544 GHMP kinases C terminal CH46_3996 PF00288 GHMP kinases N terminal domain CH46_3998 PF01263 Aldose 1-epimerase CH46_4 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH46_4 PF01842 ACT domain CH46_4 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH46_4000 PF00300 Histidine phosphatase superfamily (branch 1) CH46_4001 PF02796 Helix-turn-helix domain of resolvase CH46_4001 PF00665 Integrase core domain CH46_4002 PF01695 IstB-like ATP binding protein CH46_4003 PF00793 DAHP synthetase I family CH46_4005 PF01545 Cation efflux family CH46_4006 PF04973 Nicotinamide mononucleotide transporter CH46_4007 PF02445 Quinolinate synthetase A protein CH46_4010 PF13174 Tetratricopeptide repeat CH46_4010 PF16331 TolA binding protein trimerisation CH46_4011 PF00691 OmpA family CH46_4012 PF04052 TolB amino-terminal domain CH46_4012 PF07676 WD40-like Beta Propeller Repeat CH46_4013 PF06519 TolA C-terminal CH46_4013 PF06519 TolA C-terminal CH46_4014 PF02472 Biopolymer transport protein ExbD/TolR CH46_4015 PF01618 MotA/TolQ/ExbB proton channel family CH46_4016 PF03061 Thioesterase superfamily CH46_4017 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) CH46_4018 PF08173 Membrane bound YbgT-like protein CH46_4019 PF02322 Cytochrome bd terminal oxidase subunit II CH46_4020 PF01654 Cytochrome bd terminal oxidase subunit I CH46_4021 PF02629 CoA binding domain CH46_4021 PF00549 CoA-ligase CH46_4022 PF00549 CoA-ligase CH46_4022 PF08442 ATP-grasp domain CH46_4023 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH46_4023 PF00364 Biotin-requiring enzyme CH46_4023 PF02817 e3 binding domain CH46_4024 PF16870 2-oxoglutarate dehydrogenase C-terminal CH46_4024 PF00676 Dehydrogenase E1 component CH46_4024 PF02779 Transketolase, pyrimidine binding domain CH46_4024 PF16078 2-oxoglutarate dehydrogenase N-terminus CH46_4025 PF13085 2Fe-2S iron-sulfur cluster binding domain CH46_4026 PF02910 Fumarate reductase flavoprotein C-term CH46_4026 PF00890 FAD binding domain CH46_4027 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH46_4028 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH46_4029 PF00285 Citrate synthase, C-terminal domain CH46_4030 PF01025 GrpE CH46_4031 PF01513 ATP-NAD kinase CH46_4032 PF02463 RecF/RecN/SMC N terminal domain CH46_4033 PF04355 SmpA / OmlA family CH46_4034 PF03658 RnfH family Ubiquitin CH46_4035 PF03364 Polyketide cyclase / dehydrase and lipid transport CH46_4036 PF01668 SmpB protein CH46_4037 PF01797 Transposase IS200 like CH46_4038 PF13356 Arm DNA-binding domain CH46_4038 PF00589 Phage integrase family CH46_4048 PF05973 Phage derived protein Gp49-like (DUF891) CH46_4050 PF02796 Helix-turn-helix domain of resolvase CH46_4050 PF00665 Integrase core domain CH46_4051 PF01695 IstB-like ATP binding protein CH46_4054 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CH46_4056 PF00929 Exonuclease CH46_4057 PF00075 RNase H CH46_4058 PF08241 Methyltransferase domain CH46_4059 PF00753 Metallo-beta-lactamase superfamily CH46_4059 PF16123 Hydroxyacylglutathione hydrolase C-terminus CH46_4060 PF01476 LysM domain CH46_4060 PF01464 Transglycosylase SLT domain CH46_4061 PF03372 Endonuclease/Exonuclease/phosphatase family CH46_4063 PF00248 Aldo/keto reductase family CH46_407 PF04717 Type VI secretion system, phage-baseplate injector CH46_4070 PF09383 NIL domain CH46_4070 PF00005 ABC transporter CH46_4071 PF00528 Binding-protein-dependent transport system inner membrane component CH46_4072 PF03180 NLPA lipoprotein CH46_4073 PF16358 RcsF lipoprotein CH46_4074 PF18389 TrmO C-terminal domain CH46_4074 PF01980 tRNA-methyltransferase O CH46_4075 PF04073 Aminoacyl-tRNA editing domain CH46_4075 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH46_4075 PF03129 Anticodon binding domain CH46_4076 PF17185 NlpE C-terminal OB domain CH46_4076 PF04170 NlpE N-terminal domain CH46_4077 PF00472 RF-1 domain CH46_4078 PF07152 YaeQ protein CH46_4079 PF06786 Uncharacterised protein family (UPF0253) CH46_408 PF10431 C-terminal, D2-small domain, of ClpB protein CH46_408 PF07724 AAA domain (Cdc48 subfamily) CH46_408 PF00004 ATPase family associated with various cellular activities (AAA) CH46_408 PF17871 AAA lid domain CH46_4080 PF07073 Modulator of Rho-dependent transcription termination (ROF) CH46_4081 PF00034 Cytochrome c CH46_4082 PF01171 PP-loop family CH46_4082 PF09179 TilS substrate binding domain CH46_4082 PF11734 TilS substrate C-terminal domain CH46_4083 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH46_4084 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CH46_4085 PF02811 PHP domain CH46_4085 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH46_4085 PF01336 OB-fold nucleic acid binding domain CH46_4085 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH46_4085 PF14579 Helix-hairpin-helix motif CH46_4086 PF01351 Ribonuclease HII CH46_4087 PF02684 Lipid-A-disaccharide synthetase CH46_4088 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CH46_4088 PF00132 Bacterial transferase hexapeptide (six repeats) CH46_4089 PF07977 FabA-like domain CH46_4090 PF00132 Bacterial transferase hexapeptide (six repeats) CH46_4090 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CH46_4091 PF03938 Outer membrane protein (OmpH-like) CH46_4092 PF07244 Surface antigen variable number repeat CH46_4092 PF01103 Surface antigen CH46_4093 PF02163 Peptidase family M50 CH46_4093 PF17820 PDZ domain CH46_4095 PF01255 Putative undecaprenyl diphosphate synthase CH46_4096 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CH46_4096 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CH46_4096 PF13288 DXP reductoisomerase C-terminal domain CH46_4097 PF01765 Ribosome recycling factor CH46_4098 PF00696 Amino acid kinase family CH46_4099 PF00889 Elongation factor TS CH46_4100 PF00318 Ribosomal protein S2 CH46_4101 PF00557 Metallopeptidase family M24 CH46_4102 PF01842 ACT domain CH46_4102 PF01966 HD domain CH46_4102 PF08335 GlnD PII-uridylyltransferase CH46_4102 PF01909 Nucleotidyltransferase domain CH46_4103 PF00132 Bacterial transferase hexapeptide (six repeats) CH46_4103 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CH46_4103 PF14602 Hexapeptide repeat of succinyl-transferase CH46_4104 PF11944 Protein of unknown function (DUF3461) CH46_4105 PF00258 Flavodoxin CH46_4106 PF00849 RNA pseudouridylate synthase CH46_4107 PF04287 tRNA pseudouridine synthase C CH46_4108 PF01797 Transposase IS200 like CH46_4109 PF07348 Syd protein (SUKH-2) CH46_4110 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CH46_4110 PF14489 QueF-like protein CH46_4111 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CH46_4111 PF11892 Domain of unknown function (DUF3412) CH46_4111 PF03641 Possible lysine decarboxylase CH46_4112 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH46_4112 PF01367 5'-3' exonuclease, C-terminal SAM fold CH46_4113 PF01728 FtsJ-like methyltransferase CH46_4113 PF18125 RlmM ferredoxin-like domain CH46_4114 PF04241 Protein of unknown function (DUF423) CH46_4115 PF03466 LysR substrate binding domain CH46_4115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_4117 PF00266 Aminotransferase class-V CH46_4118 PF02657 Fe-S metabolism associated domain CH46_4119 PF00899 ThiF family CH46_4120 PF06725 3D domain CH46_4120 PF03562 MltA specific insert domain CH46_4123 PF01520 N-acetylmuramoyl-L-alanine amidase CH46_4123 PF11741 AMIN domain CH46_4124 PF00696 Amino acid kinase family CH46_4124 PF00583 Acetyltransferase (GNAT) family CH46_4125 PF13538 UvrD-like helicase C-terminal domain CH46_4126 PF12705 PD-(D/E)XK nuclease superfamily CH46_4126 PF00580 UvrD/REP helicase N-terminal domain CH46_4126 PF13361 UvrD-like helicase C-terminal domain CH46_4127 PF05193 Peptidase M16 inactive domain CH46_4127 PF16187 Middle or third domain of peptidase_M16 CH46_4127 PF00675 Insulinase (Peptidase family M16) CH46_4128 PF17946 RecC C-terminal domain CH46_4132 PF01695 IstB-like ATP binding protein CH46_4133 PF00665 Integrase core domain CH46_4133 PF02796 Helix-turn-helix domain of resolvase CH46_4134 PF00202 Aminotransferase class-III CH46_4134 PF02801 Beta-ketoacyl synthase, C-terminal domain CH46_4134 PF00550 Phosphopantetheine attachment site CH46_4134 PF00109 Beta-ketoacyl synthase, N-terminal domain CH46_4134 PF16197 Ketoacyl-synthetase C-terminal extension CH46_4134 PF00668 Condensation domain CH46_4134 PF13193 AMP-binding enzyme C-terminal domain CH46_4134 PF00501 AMP-binding enzyme CH46_4135 PF00593 TonB dependent receptor CH46_4135 PF07715 TonB-dependent Receptor Plug Domain CH46_4136 PF07687 Peptidase dimerisation domain CH46_4136 PF01546 Peptidase family M20/M25/M40 CH46_4137 PF03806 AbgT putative transporter family CH46_4138 PF14496 C-terminal novel E3 ligase, LRR-interacting CH46_4138 PF12468 Type III secretion system leucine rich repeat protein CH46_4139 PF12468 Type III secretion system leucine rich repeat protein CH46_4139 PF14496 C-terminal novel E3 ligase, LRR-interacting CH46_4139 PF14496 C-terminal novel E3 ligase, LRR-interacting CH46_4139 PF12468 Type III secretion system leucine rich repeat protein CH46_4140 PF14496 C-terminal novel E3 ligase, LRR-interacting CH46_4140 PF12468 Type III secretion system leucine rich repeat protein CH46_4141 PF03797 Autotransporter beta-domain CH46_4143 PF07906 ShET2 enterotoxin, N-terminal region CH46_4144 PF00873 AcrB/AcrD/AcrF family CH46_4145 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH46_4145 PF00529 HlyD membrane-fusion protein of T1SS CH46_4147 PF03707 Bacterial signalling protein N terminal repeat CH46_4147 PF00990 Diguanylate cyclase, GGDEF domain CH46_4147 PF00563 EAL domain CH46_4147 PF13188 PAS domain CH46_4148 PF13276 HTH-like domain CH46_4148 PF00665 Integrase core domain CH46_4148 PF13333 Integrase core domain CH46_4151 PF00593 TonB dependent receptor CH46_4151 PF07715 TonB-dependent Receptor Plug Domain CH46_4152 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CH46_4153 PF06276 Ferric iron reductase FhuF-like transporter CH46_4153 PF04183 IucA / IucC family CH46_4155 PF04183 IucA / IucC family CH46_4155 PF06276 Ferric iron reductase FhuF-like transporter CH46_4156 PF04183 IucA / IucC family CH46_4156 PF06276 Ferric iron reductase FhuF-like transporter CH46_4160 PF00765 Autoinducer synthase CH46_4161 PF00196 Bacterial regulatory proteins, luxR family CH46_4161 PF03472 Autoinducer binding domain CH46_4163 PF02517 CPBP intramembrane metalloprotease CH46_4165 PF03811 InsA N-terminal domain CH46_4165 PF12759 InsA C-terminal domain CH46_417 PF00849 RNA pseudouridylate synthase CH46_4172 PF00691 OmpA family CH46_4172 PF05736 OprF membrane domain CH46_4174 PF00004 ATPase family associated with various cellular activities (AAA) CH46_4174 PF07724 AAA domain (Cdc48 subfamily) CH46_4174 PF17871 AAA lid domain CH46_4174 PF10431 C-terminal, D2-small domain, of ClpB protein CH46_4177 PF12759 InsA C-terminal domain CH46_4177 PF03811 InsA N-terminal domain CH46_418 PF00226 DnaJ domain CH46_418 PF05099 Tellurite resistance protein TerB CH46_4181 PF12759 InsA C-terminal domain CH46_4181 PF03811 InsA N-terminal domain CH46_4182 PF03400 IS1 transposase CH46_4184 PF02899 Phage integrase, N-terminal SAM-like domain CH46_4184 PF00589 Phage integrase family CH46_4186 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH46_4186 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH46_4186 PF01276 Orn/Lys/Arg decarboxylase, major domain CH46_4187 PF13407 Periplasmic binding protein domain CH46_4188 PF00005 ABC transporter CH46_4189 PF02653 Branched-chain amino acid transport system / permease component CH46_419 PF04453 LPS transport system D CH46_419 PF03968 OstA-like protein CH46_4190 PF07715 TonB-dependent Receptor Plug Domain CH46_4192 PF01464 Transglycosylase SLT domain CH46_4192 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CH46_4193 PF04362 Bacterial Fe(2+) trafficking CH46_4194 PF10576 Iron-sulfur binding domain of endonuclease III CH46_4194 PF00633 Helix-hairpin-helix motif CH46_4194 PF00730 HhH-GPD superfamily base excision DNA repair protein CH46_4194 PF14815 NUDIX domain CH46_4195 PF02390 Putative methyltransferase CH46_4196 PF04320 Protein with unknown function (DUF469) CH46_4197 PF04960 Glutaminase CH46_4198 PF11101 Protein of unknown function (DUF2884) CH46_4199 PF11101 Protein of unknown function (DUF2884) CH46_420 PF09312 SurA N-terminal domain CH46_420 PF00639 PPIC-type PPIASE domain CH46_4200 PF11647 Membrane Localization Domain CH46_4200 PF11713 Peptidase C80 family CH46_4200 PF12146 Serine aminopeptidase, S33 CH46_4200 PF07634 RtxA repeat CH46_4200 PF16671 Actin cross-linking domain CH46_4201 PF06969 HemN C-terminal domain CH46_4201 PF04055 Radical SAM superfamily CH46_4202 PF01725 Ham1 family CH46_4203 PF02594 Uncharacterised ACR, YggU family COG1872 CH46_4204 PF02325 YGGT family CH46_4205 PF03807 NADP oxidoreductase coenzyme F420-dependent CH46_4205 PF14748 Pyrroline-5-carboxylate reductase dimerisation CH46_4206 PF01168 Alanine racemase, N-terminal domain CH46_4207 PF00437 Type II/IV secretion system protein CH46_4208 PF04371 Porphyromonas-type peptidyl-arginine deiminase CH46_4209 PF00795 Carbon-nitrogen hydrolase CH46_421 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CH46_4210 PF03652 Holliday junction resolvase CH46_4211 PF02622 Uncharacterized ACR, COG1678 CH46_4212 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CH46_4212 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CH46_4213 PF04452 RNA methyltransferase CH46_4214 PF04231 Endonuclease I CH46_4215 PF17283 SprT-like zinc ribbon domain CH46_4215 PF10263 SprT-like family CH46_4216 PF02772 S-adenosylmethionine synthetase, central domain CH46_4216 PF02773 S-adenosylmethionine synthetase, C-terminal domain CH46_4216 PF00438 S-adenosylmethionine synthetase, N-terminal domain CH46_4218 PF17944 Arginine decarboxylase C-terminal helical extension CH46_4218 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH46_4218 PF17810 Arginine decarboxylase helical bundle domain CH46_422 PF00398 Ribosomal RNA adenine dimethylase CH46_4220 PF01435 Peptidase family M48 CH46_4221 PF02780 Transketolase, C-terminal domain CH46_4221 PF02779 Transketolase, pyrimidine binding domain CH46_4221 PF00456 Transketolase, thiamine diphosphate binding domain CH46_4222 PF01797 Transposase IS200 like CH46_4223 PF00665 Integrase core domain CH46_4223 PF02796 Helix-turn-helix domain of resolvase CH46_4224 PF01695 IstB-like ATP binding protein CH46_4225 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH46_4225 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH46_4226 PF00162 Phosphoglycerate kinase CH46_4227 PF01116 Fructose-bisphosphate aldolase class-II CH46_4228 PF05552 Conserved TM helix CH46_4228 PF00924 Mechanosensitive ion channel CH46_4229 PF01810 LysE type translocator CH46_423 PF04379 ApaG domain CH46_4233 PF11775 Cobalamin biosynthesis protein CobT VWA domain CH46_4233 PF06213 Cobalamin biosynthesis protein CobT CH46_4235 PF14579 Helix-hairpin-helix motif CH46_4235 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH46_4235 PF02811 PHP domain CH46_4235 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH46_4236 PF00665 Integrase core domain CH46_4236 PF02796 Helix-turn-helix domain of resolvase CH46_4237 PF01695 IstB-like ATP binding protein CH46_4238 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CH46_424 PF00149 Calcineurin-like phosphoesterase CH46_4240 PF08400 Prophage tail fibre N-terminal CH46_4240 PF07484 Phage Tail Collar Domain CH46_4240 PF07484 Phage Tail Collar Domain CH46_4240 PF03335 Phage tail fibre repeat CH46_4240 PF08400 Prophage tail fibre N-terminal CH46_4240 PF03335 Phage tail fibre repeat CH46_426 PF01797 Transposase IS200 like CH46_4264 PF00005 ABC transporter CH46_4264 PF03412 Peptidase C39 family CH46_4264 PF00664 ABC transporter transmembrane region CH46_4265 PF17762 HTH domain found in ParB protein CH46_4265 PF02195 ParB-like nuclease domain CH46_4266 PF17762 HTH domain found in ParB protein CH46_4266 PF02195 ParB-like nuclease domain CH46_4267 PF00271 Helicase conserved C-terminal domain CH46_4267 PF00270 DEAD/DEAH box helicase CH46_4267 PF17191 RecG wedge domain CH46_427 PF00186 Dihydrofolate reductase CH46_4276 PF01797 Transposase IS200 like CH46_428 PF12821 Threonine/Serine exporter, ThrE CH46_4284 PF01051 Initiator Replication protein CH46_429 PF06738 Putative threonine/serine exporter CH46_4292 PF00154 recA bacterial DNA recombination protein CH46_4294 PF01367 5'-3' exonuclease, C-terminal SAM fold CH46_4294 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH46_430 PF01810 LysE type translocator CH46_4300 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH46_4300 PF02811 PHP domain CH46_4300 PF14579 Helix-hairpin-helix motif CH46_4300 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH46_4301 PF01695 IstB-like ATP binding protein CH46_4302 PF02796 Helix-turn-helix domain of resolvase CH46_4302 PF00665 Integrase core domain CH46_4303 PF02195 ParB-like nuclease domain CH46_4304 PF06006 Bacterial protein of unknown function (DUF905) CH46_4307 PF07128 Protein of unknown function (DUF1380) CH46_4309 PF01555 DNA methylase CH46_431 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH46_431 PF02142 MGS-like domain CH46_431 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH46_4312 PF02195 ParB-like nuclease domain CH46_4312 PF08775 ParB family CH46_4313 PF18607 ParA helix turn helix domain CH46_4313 PF13614 AAA domain CH46_4316 PF00239 Resolvase, N terminal domain CH46_4316 PF02796 Helix-turn-helix domain of resolvase CH46_4317 PF04754 Putative transposase, YhgA-like CH46_4318 PF01797 Transposase IS200 like CH46_432 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CH46_432 PF00117 Glutamine amidotransferase class-I CH46_4320 PF13091 PLD-like domain CH46_4322 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CH46_4323 PF02371 Transposase IS116/IS110/IS902 family CH46_4323 PF01548 Transposase CH46_4324 PF00872 Transposase, Mutator family CH46_4325 PF12833 Helix-turn-helix domain CH46_4325 PF06445 GyrI-like small molecule binding domain CH46_4326 PF02753 Pili assembly chaperone PapD, C-terminal domain CH46_4326 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH46_4328 PF13954 PapC N-terminal domain CH46_4328 PF00577 Outer membrane usher protein CH46_4328 PF13953 PapC C-terminal domain CH46_4329 PF09255 Caf1 Capsule antigen CH46_433 PF01113 Dihydrodipicolinate reductase, N-terminus CH46_433 PF05173 Dihydrodipicolinate reductase, C-terminus CH46_4330 PF05932 Tir chaperone protein (CesT) family CH46_4334 PF12468 Type III secretion system leucine rich repeat protein CH46_4336 PF13610 DDE domain CH46_4337 PF05844 YopD protein CH46_4338 PF04888 Secretion system effector C (SseC) like family CH46_4339 PF07720 Tetratricopeptide repeat CH46_434 PF01797 Transposase IS200 like CH46_4340 PF04792 V antigen (LcrV) protein CH46_4341 PF07216 LcrG protein CH46_4342 PF09621 Type III secretion system regulator (LcrR) CH46_4343 PF00771 FHIPEP family CH46_4345 PF09474 Type III secretion system YscX (type_III_YscX) CH46_4347 PF09059 TyeA CH46_4348 PF07201 HrpJ-like domain CH46_4349 PF18269 T3SS EscN ATPase C-terminal domain CH46_4349 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH46_4349 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH46_435 PF02401 LytB protein CH46_4350 PF07321 Type III secretion protein YscO CH46_4351 PF02120 Flagellar hook-length control protein FliK CH46_4352 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH46_4353 PF00813 FliP family CH46_4354 PF01313 Bacterial export proteins, family 3 CH46_4355 PF01311 Bacterial export proteins, family 1 CH46_4356 PF01312 FlhB HrpN YscU SpaS Family CH46_4358 PF02311 AraC-like ligand binding domain CH46_4358 PF12833 Helix-turn-helix domain CH46_4359 PF05932 Tir chaperone protein (CesT) family CH46_436 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH46_4361 PF16697 Inner membrane component of T3SS, cytoplasmic domain CH46_4361 PF16693 Inner membrane component of T3SS, periplasmic domain CH46_4362 PF08988 Type III secretion system, cytoplasmic E component of needle CH46_4363 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF CH46_4364 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) CH46_4365 PF09025 YopR, type III needle-polymerisation regulator CH46_4366 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI CH46_4367 PF01514 Secretory protein of YscJ/FliF family CH46_4368 PF06578 YOP proteins translocation protein K (YscK) CH46_4369 PF02108 Flagellar assembly protein FliH CH46_437 PF01252 Signal peptidase (SPase) II CH46_4370 PF09013 YopH, N-terminal CH46_4371 PF01527 Transposase CH46_4373 PF13683 Integrase core domain CH46_4373 PF13276 HTH-like domain CH46_4374 PF09013 YopH, N-terminal CH46_4374 PF00102 Protein-tyrosine phosphatase CH46_4375 PF13683 Integrase core domain CH46_4375 PF13276 HTH-like domain CH46_4377 PF09632 Rac1-binding domain CH46_4377 PF00069 Protein kinase domain CH46_438 PF08264 Anticodon-binding domain of tRNA CH46_438 PF00133 tRNA synthetases class I (I, L, M and V) CH46_438 PF06827 Zinc finger found in FPG and IleRS CH46_4384 PF02387 IncFII RepA protein family CH46_4385 PF10723 Replication regulatory protein RepB CH46_439 PF01687 Riboflavin kinase CH46_439 PF06574 FAD synthetase CH46_4391 PF05662 Coiled stalk of trimeric autotransporter adhesin CH46_4391 PF05658 Head domain of trimeric autotransporter adhesin CH46_4391 PF03895 YadA-like membrane anchor domain CH46_4393 PF05658 Head domain of trimeric autotransporter adhesin CH46_4393 PF03895 YadA-like membrane anchor domain CH46_4393 PF05662 Coiled stalk of trimeric autotransporter adhesin CH46_4394 PF01526 Tn3 transposase DDE domain CH46_4394 PF13700 Domain of unknown function (DUF4158) CH46_4396 PF02796 Helix-turn-helix domain of resolvase CH46_4396 PF00239 Resolvase, N terminal domain CH46_4399 PF01527 Transposase CH46_440 PF01649 Ribosomal protein S20 CH46_4400 PF13683 Integrase core domain CH46_4400 PF13276 HTH-like domain CH46_4402 PF01695 IstB-like ATP binding protein CH46_4404 PF00665 Integrase core domain CH46_4404 PF02796 Helix-turn-helix domain of resolvase CH46_4405 PF01695 IstB-like ATP binding protein CH46_4407 PF13683 Integrase core domain CH46_4407 PF13276 HTH-like domain CH46_4408 PF05932 Tir chaperone protein (CesT) family CH46_4409 PF09020 YopE, N terminal CH46_4409 PF03545 Yersinia virulence determinant (YopE) CH46_441 PF03466 LysR substrate binding domain CH46_441 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_4411 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH CH46_4413 PF18090 Centromere-binding protein HTH domain CH46_4413 PF02195 ParB-like nuclease domain CH46_4414 PF13614 AAA domain CH46_4416 PF13333 Integrase core domain CH46_4416 PF13276 HTH-like domain CH46_4416 PF00665 Integrase core domain CH46_4418 PF05818 Enterobacterial TraT complement resistance protein CH46_442 PF06965 Na+/H+ antiporter 1 CH46_4420 PF03543 Yersinia/Haemophilus virulence surface antigen CH46_4421 PF01695 IstB-like ATP binding protein CH46_4422 PF01815 Rop protein CH46_4426 PF01278 Omptin family CH46_4428 PF05973 Phage derived protein Gp49-like (DUF891) CH46_443 PF00226 DnaJ domain CH46_443 PF01556 DnaJ C terminal domain CH46_443 PF00684 DnaJ central domain CH46_444 PF00012 Hsp70 protein CH46_445 PF01184 GPR1/FUN34/yaaH family CH46_447 PF07690 Major Facilitator Superfamily CH46_448 PF00994 Probable molybdopterin binding domain CH46_449 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH46_450 PF03883 Peroxide stress protein YaaA CH46_452 PF00291 Pyridoxal-phosphate dependent enzyme CH46_452 PF14821 Threonine synthase N terminus CH46_453 PF08544 GHMP kinases C terminal CH46_453 PF00288 GHMP kinases N terminal domain CH46_454 PF03447 Homoserine dehydrogenase, NAD binding domain CH46_454 PF00742 Homoserine dehydrogenase CH46_454 PF13840 ACT domain CH46_454 PF01842 ACT domain CH46_454 PF00696 Amino acid kinase family CH46_456 PF00486 Transcriptional regulatory protein, C terminal CH46_456 PF00072 Response regulator receiver domain CH46_457 PF05981 CreA protein CH46_459 PF00300 Histidine phosphatase superfamily (branch 1) CH46_460 PF12833 Helix-turn-helix domain CH46_460 PF06445 GyrI-like small molecule binding domain CH46_461 PF01371 Trp repressor protein CH46_462 PF01931 Protein of unknown function DUF84 CH46_463 PF14718 Soluble lytic murein transglycosylase L domain CH46_463 PF01464 Transglycosylase SLT domain CH46_464 PF00690 Cation transporter/ATPase, N-terminus CH46_464 PF00689 Cation transporting ATPase, C-terminus CH46_466 PF00990 Diguanylate cyclase, GGDEF domain CH46_466 PF17152 Periplasmic sensor domain CH46_467 PF00691 OmpA family CH46_468 PF12848 ABC transporter CH46_468 PF00005 ABC transporter CH46_469 PF12848 ABC transporter CH46_469 PF00005 ABC transporter CH46_471 PF13521 AAA domain CH46_471 PF01381 Helix-turn-helix CH46_472 PF18073 Rubredoxin metal binding domain CH46_473 PF18429 Domain of unknown function (DUF5609) CH46_474 PF10144 Bacterial virulence factor haemolysin CH46_475 PF01048 Phosphorylase superfamily CH46_476 PF01676 Metalloenzyme superfamily CH46_477 PF00591 Glycosyl transferase family, a/b domain CH46_477 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CH46_477 PF02885 Glycosyl transferase family, helical bundle domain CH46_478 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CH46_478 PF02885 Glycosyl transferase family, helical bundle domain CH46_478 PF00591 Glycosyl transferase family, a/b domain CH46_479 PF01791 DeoC/LacD family aldolase CH46_480 PF07670 Nucleoside recognition CH46_480 PF07662 Na+ dependent nucleoside transporter C-terminus CH46_480 PF01773 Na+ dependent nucleoside transporter N-terminus CH46_481 PF01026 TatD related DNase CH46_482 PF01734 Patatin-like phospholipase CH46_483 PF07043 Protein of unknown function (DUF1328) CH46_484 PF04972 BON domain CH46_485 PF03144 Elongation factor Tu domain 2 CH46_485 PF16658 Class II release factor RF3, C-terminal domain CH46_485 PF00009 Elongation factor Tu GTP binding domain CH46_486 PF00583 Acetyltransferase (GNAT) family CH46_487 PF03603 DNA polymerase III psi subunit CH46_488 PF08468 Methyltransferase small domain N-terminal CH46_488 PF05175 Methyltransferase small domain CH46_490 PF07256 Protein of unknown function (DUF1435) CH46_491 PF00990 Diguanylate cyclase, GGDEF domain CH46_492 PF01095 Pectinesterase CH46_494 PF00873 AcrB/AcrD/AcrF family CH46_495 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH46_498 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH46_499 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH46_499 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH46_5 PF01812 5-formyltetrahydrofolate cyclo-ligase family CH46_500 PF04198 Putative sugar-binding domain CH46_500 PF00325 Bacterial regulatory proteins, crp family CH46_501 PF00325 Bacterial regulatory proteins, crp family CH46_501 PF04198 Putative sugar-binding domain CH46_502 PF00005 ABC transporter CH46_503 PF02653 Branched-chain amino acid transport system / permease component CH46_504 PF02653 Branched-chain amino acid transport system / permease component CH46_505 PF13407 Periplasmic binding protein domain CH46_506 PF01791 DeoC/LacD family aldolase CH46_507 PF03992 Antibiotic biosynthesis monooxygenase CH46_508 PF10696 Protein of unknown function (DUF2501) CH46_509 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH46_509 PF05524 PEP-utilising enzyme, N-terminal CH46_509 PF00391 PEP-utilising enzyme, mobile domain CH46_509 PF02896 PEP-utilising enzyme, TIM barrel domain CH46_509 PF00381 PTS HPr component phosphorylation site CH46_511 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH46_512 PF12833 Helix-turn-helix domain CH46_513 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH46_515 PF05987 Bacterial protein of unknown function (DUF898) CH46_519 PF00665 Integrase core domain CH46_524 PF01555 DNA methylase CH46_525 PF01527 Transposase CH46_527 PF12102 Domain of unknown function (DUF3578) CH46_527 PF07728 AAA domain (dynein-related subfamily) CH46_528 PF00665 Integrase core domain CH46_528 PF02796 Helix-turn-helix domain of resolvase CH46_529 PF01695 IstB-like ATP binding protein CH46_531 PF07338 Protein of unknown function (DUF1471) CH46_532 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH46_532 PF02770 Acyl-CoA dehydrogenase, middle domain CH46_532 PF18158 Adaptive response protein AidB N-terminal domain CH46_533 PF00588 SpoU rRNA Methylase family CH46_533 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH46_534 PF08461 Ribonuclease R winged-helix domain CH46_534 PF08206 Ribonuclease B OB domain CH46_534 PF00773 RNB domain CH46_534 PF00575 S1 RNA binding domain CH46_534 PF17876 Cold shock domain CH46_535 PF02082 Transcriptional regulator CH46_536 PF00709 Adenylosuccinate synthetase CH46_537 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CH46_538 PF01145 SPFH domain / Band 7 family CH46_539 PF12221 Bacterial membrane protein N terminal CH46_539 PF01145 SPFH domain / Band 7 family CH46_54 PF03551 Transcriptional regulator PadR-like family CH46_540 PF01926 50S ribosome-binding GTPase CH46_540 PF13167 GTP-binding GTPase N-terminal CH46_540 PF16360 GTP-binding GTPase Middle Region CH46_541 PF17209 Hfq protein CH46_543 PF01119 DNA mismatch repair protein, C-terminal domain CH46_543 PF08676 MutL C terminal dimerisation domain CH46_544 PF01520 N-acetylmuramoyl-L-alanine amidase CH46_545 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CH46_546 PF01256 Carbohydrate kinase CH46_546 PF03853 YjeF-related protein N-terminus CH46_547 PF08331 Domain of unknown function (DUF1730) CH46_55 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family CH46_550 PF00929 Exonuclease CH46_551 PF03193 RsgA GTPase CH46_552 PF02666 Phosphatidylserine decarboxylase CH46_553 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH46_553 PF12795 Mechanosensitive ion channel porin domain CH46_553 PF00924 Mechanosensitive ion channel CH46_554 PF00152 tRNA synthetases class II (D, K and N) CH46_555 PF02910 Fumarate reductase flavoprotein C-term CH46_555 PF00890 FAD binding domain CH46_556 PF13085 2Fe-2S iron-sulfur cluster binding domain CH46_556 PF13183 4Fe-4S dicluster domain CH46_557 PF02300 Fumarate reductase subunit C CH46_558 PF02313 Fumarate reductase subunit D CH46_559 PF01797 Transposase IS200 like CH46_560 PF00893 Small Multidrug Resistance protein CH46_561 PF08207 Elongation factor P (EF-P) KOW-like domain CH46_561 PF09285 Elongation factor P, C-terminal CH46_561 PF01132 Elongation factor P (EF-P) OB domain CH46_562 PF04055 Radical SAM superfamily CH46_563 PF13698 Domain of unknown function (DUF4156) CH46_564 PF00118 TCP-1/cpn60 chaperonin family CH46_565 PF00166 Chaperonin 10 Kd subunit CH46_566 PF04186 FxsA cytoplasmic membrane protein CH46_567 PF10415 Fumarase C C-terminus CH46_567 PF00206 Lyase CH46_568 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH46_569 PF03091 CutA1 divalent ion tolerance protein CH46_57 PF13407 Periplasmic binding protein domain CH46_570 PF11412 Disulphide bond corrector protein DsbC CH46_570 PF02683 Cytochrome C biogenesis protein transmembrane region CH46_571 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH46_571 PF00384 Molybdopterin oxidoreductase CH46_571 PF01568 Molydopterin dinucleotide binding domain CH46_572 PF13247 4Fe-4S dicluster domain CH46_572 PF12800 4Fe-4S binding domain CH46_573 PF13247 4Fe-4S dicluster domain CH46_573 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH46_573 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH46_58 PF02653 Branched-chain amino acid transport system / permease component CH46_580 PF06379 L-rhamnose-proton symport protein (RhaT) CH46_581 PF02311 AraC-like ligand binding domain CH46_581 PF12833 Helix-turn-helix domain CH46_582 PF12833 Helix-turn-helix domain CH46_582 PF02311 AraC-like ligand binding domain CH46_585 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH46_585 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH46_586 PF06134 L-rhamnose isomerase (RhaA) CH46_587 PF00596 Class II Aldolase and Adducin N-terminal domain CH46_588 PF00465 Iron-containing alcohol dehydrogenase CH46_589 PF05336 L-rhamnose mutarotase CH46_59 PF00005 ABC transporter CH46_590 PF00436 Single-strand binding protein family CH46_591 PF17755 UvrA DNA-binding domain CH46_591 PF17760 UvrA interaction domain CH46_591 PF00005 ABC transporter CH46_592 PF04237 YjbR CH46_593 PF00155 Aminotransferase class I and II CH46_594 PF00842 Alanine racemase, C-terminal domain CH46_594 PF01168 Alanine racemase, N-terminal domain CH46_595 PF00772 DnaB-like helicase N terminal domain CH46_595 PF03796 DnaB-like helicase C terminal domain CH46_596 PF00107 Zinc-binding dehydrogenase CH46_596 PF08240 Alcohol dehydrogenase GroES-like domain CH46_597 PF09583 Phage shock protein G (Phageshock_PspG) CH46_598 PF01207 Dihydrouridine synthase (Dus) CH46_599 PF01475 Ferric uptake regulator family CH46_6 PF05164 Cell division protein ZapA CH46_60 PF17912 MalK OB fold domain CH46_60 PF00005 ABC transporter CH46_600 PF00717 Peptidase S24-like CH46_600 PF01726 LexA DNA binding domain CH46_601 PF01219 Prokaryotic diacylglycerol kinase CH46_602 PF01553 Acyltransferase CH46_603 PF01040 UbiA prenyltransferase family CH46_604 PF04345 Chorismate lyase CH46_605 PF12951 Passenger-associated-transport-repeat CH46_606 PF08031 Berberine and berberine like CH46_606 PF01565 FAD binding domain CH46_609 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH46_61 PF13416 Bacterial extracellular solute-binding protein CH46_610 PF13953 PapC C-terminal domain CH46_610 PF13954 PapC N-terminal domain CH46_610 PF00577 Outer membrane usher protein CH46_612 PF02342 TerD domain CH46_613 PF02342 TerD domain CH46_614 PF03741 Integral membrane protein TerC family CH46_615 PF05099 Tellurite resistance protein TerB CH46_616 PF02342 TerD domain CH46_617 PF02342 TerD domain CH46_62 PF00528 Binding-protein-dependent transport system inner membrane component CH46_621 PF15608 PELOTA RNA binding domain CH46_621 PF11202 Phosphoribosyl transferase (PRTase) CH46_625 PF04055 Radical SAM superfamily CH46_626 PF06228 Haem utilisation ChuX/HutX CH46_627 PF13460 NAD(P)H-binding CH46_629 PF00593 TonB dependent receptor CH46_629 PF07715 TonB-dependent Receptor Plug Domain CH46_63 PF00528 Binding-protein-dependent transport system inner membrane component CH46_630 PF05171 Haemin-degrading HemS.ChuX domain CH46_631 PF01497 Periplasmic binding protein CH46_632 PF01032 FecCD transport family CH46_633 PF00005 ABC transporter CH46_634 PF01053 Cys/Met metabolism PLP-dependent enzyme CH46_635 PF03222 Tryptophan/tyrosine permease family CH46_636 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_636 PF03466 LysR substrate binding domain CH46_637 PF01206 Sulfurtransferase TusA CH46_638 PF04143 Sulphur transport CH46_639 PF01312 FlhB HrpN YscU SpaS Family CH46_64 PF07745 Glycosyl hydrolase family 53 CH46_640 PF01311 Bacterial export proteins, family 1 CH46_641 PF01313 Bacterial export proteins, family 3 CH46_642 PF00813 FliP family CH46_643 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH46_646 PF18269 T3SS EscN ATPase C-terminal domain CH46_646 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH46_647 PF00771 FHIPEP family CH46_65 PF08532 Beta-galactosidase trimerisation domain CH46_65 PF02449 Beta-galactosidase CH46_65 PF08533 Beta-galactosidase C-terminal domain CH46_650 PF01514 Secretory protein of YscJ/FliF family CH46_654 PF14525 AraC-binding-like domain CH46_654 PF12833 Helix-turn-helix domain CH46_658 PF00072 Response regulator receiver domain CH46_658 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH46_658 PF01627 Hpt domain CH46_658 PF00512 His Kinase A (phospho-acceptor) domain CH46_658 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_658 PF00672 HAMP domain CH46_659 PF00196 Bacterial regulatory proteins, luxR family CH46_659 PF00072 Response regulator receiver domain CH46_66 PF00367 phosphotransferase system, EIIB CH46_66 PF02378 Phosphotransferase system, EIIC CH46_660 PF00375 Sodium:dicarboxylate symporter family CH46_661 PF13193 AMP-binding enzyme C-terminal domain CH46_661 PF00501 AMP-binding enzyme CH46_661 PF16177 Acetyl-coenzyme A synthetase N-terminus CH46_662 PF04341 Protein of unknown function, DUF485 CH46_663 PF00474 Sodium:solute symporter family CH46_665 PF02796 Helix-turn-helix domain of resolvase CH46_665 PF00665 Integrase core domain CH46_668 PF01695 IstB-like ATP binding protein CH46_669 PF00132 Bacterial transferase hexapeptide (six repeats) CH46_67 PF02264 LamB porin CH46_670 PF01488 Shikimate / quinate 5-dehydrogenase CH46_670 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CH46_670 PF08501 Shikimate dehydrogenase substrate binding domain CH46_671 PF01300 Telomere recombination CH46_672 PF01396 Topoisomerase DNA binding C4 zinc finger CH46_673 PF04361 Protein of unknown function (DUF494) CH46_674 PF02481 DNA recombination-mediator protein A CH46_674 PF17782 DprA winged helix domain CH46_675 PF01327 Polypeptide deformylase CH46_676 PF00551 Formyl transferase CH46_676 PF02911 Formyl transferase, C-terminal domain CH46_677 PF01029 NusB family CH46_677 PF01189 16S rRNA methyltransferase RsmB/F CH46_678 PF02080 TrkA-C domain CH46_678 PF02254 TrkA-N domain CH46_679 PF01741 Large-conductance mechanosensitive channel, MscL CH46_68 PF00356 Bacterial regulatory proteins, lacI family CH46_680 PF03889 Alternative ribosome-rescue factor A CH46_681 PF13411 MerR HTH family regulatory protein CH46_682 PF01196 Ribosomal protein L17 CH46_683 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CH46_683 PF01000 RNA polymerase Rpb3/RpoA insert domain CH46_683 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CH46_684 PF00163 Ribosomal protein S4/S9 N-terminal domain CH46_684 PF01479 S4 domain CH46_685 PF00411 Ribosomal protein S11 CH46_686 PF00416 Ribosomal protein S13/S18 CH46_687 PF00444 Ribosomal protein L36 CH46_688 PF00344 SecY translocase CH46_689 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CH46_69 PF16338 Domain of unknown function (DUF4968) CH46_69 PF01055 Glycosyl hydrolases family 31 CH46_69 PF13802 Galactose mutarotase-like CH46_69 PF17137 Domain of unknown function (DUF5110) CH46_690 PF00327 Ribosomal protein L30p/L7e CH46_691 PF00333 Ribosomal protein S5, N-terminal domain CH46_691 PF03719 Ribosomal protein S5, C-terminal domain CH46_692 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CH46_693 PF00347 Ribosomal protein L6 CH46_694 PF00410 Ribosomal protein S8 CH46_695 PF00253 Ribosomal protein S14p/S29e CH46_696 PF00673 ribosomal L5P family C-terminus CH46_696 PF00281 Ribosomal protein L5 CH46_697 PF00467 KOW motif CH46_697 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CH46_698 PF00238 Ribosomal protein L14p/L23e CH46_699 PF00366 Ribosomal protein S17 CH46_7 PF03695 Uncharacterised protein family (UPF0149) CH46_70 PF07690 Major Facilitator Superfamily CH46_700 PF00831 Ribosomal L29 protein CH46_701 PF00252 Ribosomal protein L16p/L10e CH46_702 PF00189 Ribosomal protein S3, C-terminal domain CH46_702 PF07650 KH domain CH46_703 PF00237 Ribosomal protein L22p/L17e CH46_704 PF00203 Ribosomal protein S19 CH46_705 PF03947 Ribosomal Proteins L2, C-terminal domain CH46_705 PF00181 Ribosomal Proteins L2, RNA binding domain CH46_706 PF00276 Ribosomal protein L23 CH46_707 PF00573 Ribosomal protein L4/L1 family CH46_708 PF00297 Ribosomal protein L3 CH46_709 PF00338 Ribosomal protein S10p/S20e CH46_71 PF00356 Bacterial regulatory proteins, lacI family CH46_710 PF00210 Ferritin-like domain CH46_711 PF04324 BFD-like [2Fe-2S] binding domain CH46_712 PF01797 Transposase IS200 like CH46_713 PF03143 Elongation factor Tu C-terminal domain CH46_713 PF03144 Elongation factor Tu domain 2 CH46_713 PF00009 Elongation factor Tu GTP binding domain CH46_714 PF00009 Elongation factor Tu GTP binding domain CH46_714 PF03764 Elongation factor G, domain IV CH46_714 PF00679 Elongation factor G C-terminus CH46_714 PF14492 Elongation Factor G, domain II CH46_714 PF03144 Elongation factor Tu domain 2 CH46_715 PF00177 Ribosomal protein S7p/S5e CH46_716 PF00164 Ribosomal protein S12/S23 CH46_717 PF04077 DsrH like protein CH46_718 PF02635 DsrE/DsrF-like family CH46_719 PF02635 DsrE/DsrF-like family CH46_720 PF13309 HTH domain CH46_720 PF08348 YheO-like PAS domain CH46_721 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH46_721 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH46_722 PF04102 SlyX CH46_723 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH46_724 PF09526 Probable metal-binding protein (DUF2387) CH46_725 PF02254 TrkA-N domain CH46_725 PF00999 Sodium/hydrogen exchanger family CH46_726 PF02525 Flavodoxin-like fold CH46_727 PF00005 ABC transporter CH46_727 PF12848 ABC transporter CH46_728 PF12848 ABC transporter CH46_728 PF00005 ABC transporter CH46_729 PF00535 Glycosyl transferase family 2 CH46_731 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CH46_732 PF00528 Binding-protein-dependent transport system inner membrane component CH46_733 PF00005 ABC transporter CH46_734 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH46_735 PF01810 LysE type translocator CH46_736 PF00561 alpha/beta hydrolase fold CH46_737 PF06794 Uncharacterised protein family (UPF0270) CH46_738 PF00485 Phosphoribulokinase / Uridine kinase family CH46_74 PF01116 Fructose-bisphosphate aldolase class-II CH46_740 PF02566 OsmC-like protein CH46_741 PF00027 Cyclic nucleotide-binding domain CH46_741 PF13545 Crp-like helix-turn-helix domain CH46_742 PF12805 FUSC-like inner membrane protein yccS CH46_743 PF00202 Aminotransferase class-III CH46_744 PF00117 Glutamine amidotransferase class-I CH46_745 PF05872 Bacterial protein of unknown function (DUF853) CH46_746 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH46_747 PF11975 Family 4 glycosyl hydrolase C-terminal domain CH46_747 PF02056 Family 4 glycosyl hydrolase CH46_748 PF02796 Helix-turn-helix domain of resolvase CH46_748 PF00665 Integrase core domain CH46_749 PF01695 IstB-like ATP binding protein CH46_750 PF02056 Family 4 glycosyl hydrolase CH46_750 PF11975 Family 4 glycosyl hydrolase C-terminal domain CH46_751 PF00356 Bacterial regulatory proteins, lacI family CH46_753 PF07690 Major Facilitator Superfamily CH46_754 PF07969 Amidohydrolase family CH46_755 PF04324 BFD-like [2Fe-2S] binding domain CH46_755 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH46_755 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH46_755 PF18267 Rubredoxin NAD+ reductase C-terminal domain CH46_755 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH46_756 PF13806 Rieske-like [2Fe-2S] domain CH46_757 PF01226 Formate/nitrite transporter CH46_758 PF14824 Sirohaem biosynthesis protein central CH46_758 PF10414 Sirohaem synthase dimerisation region CH46_758 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH46_759 PF00579 tRNA synthetases class I (W and Y) CH46_76 PF00884 Sulfatase CH46_760 PF13419 Haloacid dehalogenase-like hydrolase CH46_761 PF00834 Ribulose-phosphate 3 epimerase family CH46_762 PF02086 D12 class N6 adenine-specific DNA methyltransferase CH46_763 PF05036 Sporulation related domain CH46_764 PF01761 3-dehydroquinate synthase CH46_765 PF01202 Shikimate kinase CH46_766 PF03958 Bacterial type II/III secretion system short domain CH46_766 PF00263 Bacterial type II and III secretion system protein CH46_77 PF04055 Radical SAM superfamily CH46_77 PF13186 Iron-sulfur cluster-binding domain CH46_771 PF17092 Penicillin-binding protein OB-like domain CH46_771 PF00905 Penicillin binding protein transpeptidase domain CH46_771 PF00912 Transglycosylase CH46_772 PF00293 NUDIX domain CH46_774 PF07095 Intracellular growth attenuator protein IgaA CH46_775 PF13419 Haloacid dehalogenase-like hydrolase CH46_776 PF01479 S4 domain CH46_777 PF01430 Hsp33 protein CH46_778 PF01293 Phosphoenolpyruvate carboxykinase CH46_779 PF00512 His Kinase A (phospho-acceptor) domain CH46_779 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_779 PF00672 HAMP domain CH46_780 PF00486 Transcriptional regulatory protein, C terminal CH46_780 PF00072 Response regulator receiver domain CH46_781 PF03449 Transcription elongation factor, N-terminal CH46_781 PF01272 Transcription elongation factor, GreA/GreB, C-term CH46_782 PF17674 HHH domain CH46_782 PF00575 S1 RNA binding domain CH46_782 PF16921 Tex protein YqgF-like domain CH46_782 PF09371 Tex-like protein N-terminal domain CH46_783 PF04023 FeoA domain CH46_784 PF02421 Ferrous iron transport protein B CH46_784 PF17910 FeoB cytosolic helical domain CH46_784 PF07670 Nucleoside recognition CH46_784 PF07664 Ferrous iron transport protein B C terminus CH46_785 PF09012 FeoC like transcriptional regulator CH46_786 PF07338 Protein of unknown function (DUF1471) CH46_787 PF00561 alpha/beta hydrolase fold CH46_788 PF00156 Phosphoribosyl transferase domain CH46_789 PF01106 NifU-like domain CH46_789 PF01521 Iron-sulphur cluster biosynthesis CH46_790 PF02446 4-alpha-glucanotransferase CH46_791 PF00343 Carbohydrate phosphorylase CH46_792 PF00343 Carbohydrate phosphorylase CH46_793 PF00196 Bacterial regulatory proteins, luxR family CH46_793 PF17874 MalT-like TPR region CH46_794 PF00581 Rhodanese-like domain CH46_795 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CH46_795 PF01694 Rhomboid family CH46_796 PF00455 DeoR C terminal sensor domain CH46_796 PF08220 DeoR-like helix-turn-helix domain CH46_798 PF13333 Integrase core domain CH46_798 PF00665 Integrase core domain CH46_798 PF13276 HTH-like domain CH46_799 PF02219 Methylenetetrahydrofolate reductase CH46_8 PF00557 Metallopeptidase family M24 CH46_8 PF05195 Aminopeptidase P, N-terminal domain CH46_80 PF01979 Amidohydrolase family CH46_800 PF03447 Homoserine dehydrogenase, NAD binding domain CH46_800 PF00696 Amino acid kinase family CH46_800 PF00742 Homoserine dehydrogenase CH46_801 PF01053 Cys/Met metabolism PLP-dependent enzyme CH46_802 PF01053 Cys/Met metabolism PLP-dependent enzyme CH46_803 PF01340 Met Apo-repressor, MetJ CH46_804 PF05360 yiaA/B two helix domain CH46_805 PF01197 Ribosomal protein L31 CH46_806 PF18074 Primosomal protein N C-terminal domain CH46_806 PF00271 Helicase conserved C-terminal domain CH46_806 PF17764 3′ DNA-binding domain (3′BD) CH46_806 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CH46_806 PF00270 DEAD/DEAH box helicase CH46_808 PF00356 Bacterial regulatory proteins, lacI family CH46_809 PF05036 Sporulation related domain CH46_81 PF03610 PTS system fructose IIA component CH46_810 PF00227 Proteasome subunit CH46_811 PF10431 C-terminal, D2-small domain, of ClpB protein CH46_811 PF00004 ATPase family associated with various cellular activities (AAA) CH46_811 PF07724 AAA domain (Cdc48 subfamily) CH46_812 PF01040 UbiA prenyltransferase family CH46_813 PF03737 Aldolase/RraA CH46_816 PF00529 HlyD membrane-fusion protein of T1SS CH46_816 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH46_817 PF03412 Peptidase C39 family CH46_817 PF00664 ABC transporter transmembrane region CH46_817 PF00005 ABC transporter CH46_818 PF02796 Helix-turn-helix domain of resolvase CH46_818 PF00665 Integrase core domain CH46_819 PF01695 IstB-like ATP binding protein CH46_82 PF03613 PTS system mannose/fructose/sorbose family IID component CH46_820 PF00664 ABC transporter transmembrane region CH46_820 PF00005 ABC transporter CH46_820 PF03412 Peptidase C39 family CH46_821 PF01797 Transposase IS200 like CH46_822 PF06005 Cell division protein ZapB CH46_823 PF00230 Major intrinsic protein CH46_824 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH46_824 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH46_825 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CH46_826 PF00970 Oxidoreductase FAD-binding domain CH46_826 PF00175 Oxidoreductase NAD-binding domain CH46_827 PF05656 Protein of unknown function (DUF805) CH46_828 PF07305 Protein of unknown function (DUF1454) CH46_829 PF00121 Triosephosphate isomerase CH46_83 PF03609 PTS system sorbose-specific iic component CH46_830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH46_830 PF03466 LysR substrate binding domain CH46_831 PF02585 GlcNAc-PI de-N-acetylase CH46_832 PF03737 Aldolase/RraA CH46_833 PF00939 Sodium:sulfate symporter transmembrane region CH46_837 PF00365 Phosphofructokinase CH46_838 PF01545 Cation efflux family CH46_838 PF16916 Dimerisation domain of Zinc Transporter CH46_839 PF04754 Putative transposase, YhgA-like CH46_84 PF03830 PTS system sorbose subfamily IIB component CH46_840 PF07813 LTXXQ motif family protein CH46_841 PF00072 Response regulator receiver domain CH46_841 PF00486 Transcriptional regulatory protein, C terminal CH46_842 PF00512 His Kinase A (phospho-acceptor) domain CH46_842 PF16527 Two-component sensor protein CpxA, periplasmic domain CH46_842 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_842 PF00672 HAMP domain CH46_843 PF02805 Metal binding domain of Ada CH46_843 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH46_843 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH46_843 PF12833 Helix-turn-helix domain CH46_844 PF00588 SpoU rRNA Methylase family CH46_845 PF00132 Bacterial transferase hexapeptide (six repeats) CH46_845 PF06426 Serine acetyltransferase, N-terminal CH46_846 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CH46_846 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CH46_847 PF02556 Preprotein translocase subunit SecB CH46_848 PF00462 Glutaredoxin CH46_849 PF00581 Rhodanese-like domain CH46_85 PF01380 SIS domain CH46_850 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CH46_850 PF01676 Metalloenzyme superfamily CH46_851 PF01551 Peptidase family M23 CH46_852 PF04748 Divergent polysaccharide deacetylase CH46_853 PF04748 Divergent polysaccharide deacetylase CH46_854 PF08240 Alcohol dehydrogenase GroES-like domain CH46_854 PF00107 Zinc-binding dehydrogenase CH46_855 PF00155 Aminotransferase class I and II CH46_856 PF01370 NAD dependent epimerase/dehydratase family CH46_857 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH46_858 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH46_859 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CH46_86 PF08013 Tagatose 6 phosphate kinase CH46_860 PF00535 Glycosyl transferase family 2 CH46_861 PF01467 Cytidylyltransferase-like CH46_862 PF06827 Zinc finger found in FPG and IleRS CH46_862 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CH46_862 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CH46_863 PF00471 Ribosomal protein L33 CH46_864 PF00830 Ribosomal L28 family CH46_865 PF04002 RadC-like JAB domain CH46_866 PF04127 DNA / pantothenate metabolism flavoprotein CH46_866 PF02441 Flavoprotein CH46_867 PF00692 dUTPase CH46_868 PF00440 Bacterial regulatory proteins, tetR family CH46_869 PF00156 Phosphoribosyl transferase domain CH46_87 PF08220 DeoR-like helix-turn-helix domain CH46_87 PF00455 DeoR C terminal sensor domain CH46_870 PF03725 3' exoribonuclease family, domain 2 CH46_870 PF01138 3' exoribonuclease family, domain 1 CH46_871 PF08340 Domain of unknown function (DUF1732) CH46_871 PF03755 YicC-like family, N-terminal region CH46_872 PF03458 UPF0126 domain CH46_873 PF03120 NAD-dependent DNA ligase OB-fold domain CH46_873 PF01653 NAD-dependent DNA ligase adenylation domain CH46_874 PF00625 Guanylate kinase CH46_875 PF01192 RNA polymerase Rpb6 CH46_876 PF02824 TGS domain CH46_876 PF04607 Region found in RelA / SpoT proteins CH46_876 PF13291 ACT domain CH46_877 PF00588 SpoU rRNA Methylase family CH46_877 PF12105 SpoU, rRNA methylase, C-terminal CH46_878 PF00271 Helicase conserved C-terminal domain CH46_878 PF17191 RecG wedge domain CH46_878 PF00270 DEAD/DEAH box helicase CH46_879 PF03616 Sodium/glutamate symporter CH46_88 PF00884 Sulfatase CH46_880 PF00860 Permease family CH46_881 PF05170 AsmA family CH46_882 PF00583 Acetyltransferase (GNAT) family CH46_882 PF09500 Putative thioesterase (yiiD_Cterm) CH46_883 PF02796 Helix-turn-helix domain of resolvase CH46_883 PF00665 Integrase core domain CH46_884 PF01695 IstB-like ATP binding protein CH46_885 PF02580 D-Tyr-tRNA(Tyr) deacylase CH46_886 PF03631 Virulence factor BrkB CH46_887 PF13419 Haloacid dehalogenase-like hydrolase CH46_889 PF03951 Glutamine synthetase, beta-Grasp domain CH46_889 PF00120 Glutamine synthetase, catalytic domain CH46_89 PF01797 Transposase IS200 like CH46_890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_890 PF00989 PAS fold CH46_890 PF00512 His Kinase A (phospho-acceptor) domain CH46_891 PF02954 Bacterial regulatory protein, Fis family CH46_891 PF00072 Response regulator receiver domain CH46_891 PF00158 Sigma-54 interaction domain CH46_892 PF06969 HemN C-terminal domain CH46_892 PF04055 Radical SAM superfamily CH46_893 PF04220 Der GTPase activator (YihI) CH46_894 PF01926 50S ribosome-binding GTPase CH46_895 PF01797 Transposase IS200 like CH46_896 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH46_896 PF00476 DNA polymerase family A CH46_896 PF01367 5'-3' exonuclease, C-terminal SAM fold CH46_896 PF01612 3'-5' exonuclease CH46_897 PF01323 DSBA-like thioredoxin domain CH46_898 PF01636 Phosphotransferase enzyme family CH46_899 PF06288 Protein of unknown function (DUF1040) CH46_9 PF01494 FAD binding domain CH46_90 PF02796 Helix-turn-helix domain of resolvase CH46_90 PF00665 Integrase core domain CH46_900 PF12804 MobA-like NTP transferase domain CH46_901 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CH46_902 PF00872 Transposase, Mutator family CH46_907 PF07729 FCD domain CH46_907 PF00392 Bacterial regulatory proteins, gntR family CH46_909 PF07690 Major Facilitator Superfamily CH46_91 PF01695 IstB-like ATP binding protein CH46_910 PF00294 pfkB family carbohydrate kinase CH46_911 PF05025 RbsD / FucU transport protein family CH46_912 PF02705 K+ potassium transporter CH46_913 PF07728 AAA domain (dynein-related subfamily) CH46_913 PF17868 AAA lid domain CH46_913 PF12592 Protein of unknown function (DUF3763) CH46_914 PF05762 VWA domain containing CoxE-like protein CH46_915 PF03590 Aspartate-ammonia ligase CH46_916 PF01037 Lrp/AsnC ligand binding domain CH46_917 PF00258 Flavodoxin CH46_918 PF01134 Glucose inhibited division protein A CH46_918 PF13932 GidA associated domain CH46_919 PF02527 rRNA small subunit methyltransferase G CH46_92 PF02278 Polysaccharide lyase family 8, super-sandwich domain CH46_92 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain CH46_92 PF09093 Lyase, catalytic CH46_92 PF09092 Lyase, N terminal CH46_920 PF03899 ATP synthase I chain CH46_921 PF00119 ATP synthase A chain CH46_922 PF00137 ATP synthase subunit C CH46_923 PF00430 ATP synthase B/B' CF(0) CH46_924 PF00213 ATP synthase delta (OSCP) subunit CH46_925 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH46_925 PF00306 ATP synthase alpha/beta chain, C terminal domain CH46_925 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH46_926 PF00231 ATP synthase CH46_927 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH46_927 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH46_928 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CH46_928 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CH46_929 PF12804 MobA-like NTP transferase domain CH46_929 PF00132 Bacterial transferase hexapeptide (six repeats) CH46_930 PF01380 SIS domain CH46_931 PF12849 PBP superfamily domain CH46_932 PF00528 Binding-protein-dependent transport system inner membrane component CH46_933 PF00528 Binding-protein-dependent transport system inner membrane component CH46_934 PF00005 ABC transporter CH46_935 PF01895 PhoU domain CH46_937 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH46_938 PF00528 Binding-protein-dependent transport system inner membrane component CH46_939 PF00528 Binding-protein-dependent transport system inner membrane component CH46_940 PF13419 Haloacid dehalogenase-like hydrolase CH46_941 PF00860 Permease family CH46_944 PF12241 Trans-2-enoyl-CoA reductase catalytic region CH46_944 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CH46_944 PF07055 Enoyl reductase FAD binding domain CH46_945 PF10396 GTP-binding protein TrmE N-terminus CH46_945 PF12631 MnmE helical domain CH46_945 PF01926 50S ribosome-binding GTPase CH46_946 PF14849 YidC periplasmic domain CH46_946 PF02096 60Kd inner membrane protein CH46_947 PF01809 Putative membrane protein insertion efficiency factor CH46_948 PF00825 Ribonuclease P CH46_949 PF00468 Ribosomal protein L34 CH46_951 PF08299 Bacterial dnaA protein helix-turn-helix CH46_951 PF11638 DnaA N-terminal domain CH46_951 PF00308 Bacterial dnaA protein CH46_952 PF02768 DNA polymerase III beta subunit, C-terminal domain CH46_952 PF02767 DNA polymerase III beta subunit, central domain CH46_952 PF00712 DNA polymerase III beta subunit, N-terminal domain CH46_953 PF02463 RecF/RecN/SMC N terminal domain CH46_954 PF00986 DNA gyrase B subunit, carboxyl terminus CH46_954 PF18053 DNA gyrase B subunit insert domain CH46_954 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH46_954 PF01751 Toprim domain CH46_954 PF00204 DNA gyrase B CH46_956 PF02796 Helix-turn-helix domain of resolvase CH46_956 PF00665 Integrase core domain CH46_957 PF01695 IstB-like ATP binding protein CH46_958 PF00665 Integrase core domain CH46_958 PF13333 Integrase core domain CH46_958 PF13276 HTH-like domain CH46_96 PF00484 Carbonic anhydrase CH46_961 PF02423 Ornithine cyclodeaminase/mu-crystallin family CH46_962 PF13291 ACT domain CH46_962 PF00291 Pyridoxal-phosphate dependent enzyme CH46_963 PF12566 Protein of unknown function (DUF3748) CH46_963 PF07676 WD40-like Beta Propeller Repeat CH46_964 PF12566 Protein of unknown function (DUF3748) CH46_964 PF07676 WD40-like Beta Propeller Repeat CH46_965 PF07119 Protein of unknown function (DUF1375) CH46_966 PF00011 Hsp20/alpha crystallin family CH46_967 PF00011 Hsp20/alpha crystallin family CH46_968 PF06826 Predicted Permease Membrane Region CH46_968 PF02080 TrkA-C domain CH46_969 PF00155 Aminotransferase class I and II CH46_971 PF00128 Alpha amylase, catalytic domain CH46_972 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH46_972 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH46_974 PF00691 OmpA family CH46_974 PF13488 Glycine zipper CH46_976 PF03352 Methyladenine glycosylase CH46_978 PF02091 Glycyl-tRNA synthetase alpha subunit CH46_979 PF05746 DALR anticodon binding domain CH46_979 PF02092 Glycyl-tRNA synthetase beta subunit CH46_980 PF11254 Protein of unknown function (DUF3053) CH46_981 PF02378 Phosphotransferase system, EIIC CH46_981 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH46_981 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH46_982 PF08125 Mannitol dehydrogenase C-terminal domain CH46_982 PF01232 Mannitol dehydrogenase Rossmann domain CH46_983 PF05068 Mannitol repressor CH46_985 PF10928 Protein of unknown function (DUF2810) CH46_989 PF02203 Tar ligand binding domain homologue CH46_989 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH46_989 PF00672 HAMP domain CH46_99 PF00263 Bacterial type II and III secretion system protein CH46_99 PF03958 Bacterial type II/III secretion system short domain CH46_990 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH46_990 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH46_991 PF02634 FdhD/NarQ family CH46_992 PF01568 Molydopterin dinucleotide binding domain CH46_992 PF00384 Molybdopterin oxidoreductase CH46_992 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH46_993 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH46_993 PF00384 Molybdopterin oxidoreductase CH46_993 PF01568 Molydopterin dinucleotide binding domain CH46_994 PF13247 4Fe-4S dicluster domain CH46_994 PF09163 Formate dehydrogenase N, transmembrane CH46_995 PF01292 Prokaryotic cytochrome b561 CH46_996 PF04216 Protein involved in formate dehydrogenase formation CH46_997 PF12390 Selenocysteine synthase N terminal CH46_997 PF03841 L-seryl-tRNA selenium transferase