CH46_1	PF04402	Protein of unknown function (DUF541)
CH46_10	PF01494	FAD binding domain
CH46_100	PF00437	Type II/IV secretion system protein
CH46_1000	PF01526	CH46_1000
CH46_1002	PF13988	CH46_1002
CH46_1005	PF07690	Major Facilitator Superfamily
CH46_1006	PF00665	Integrase core domain
CH46_1006	PF13276	CH46_1006
CH46_1007	PF13518	Helix-turn-helix domain
CH46_1008	PF01757	CH46_1008
CH46_1009	PF00419	Fimbrial protein
CH46_1010	PF00577	Outer membrane usher protein
CH46_1010	PF13954	PapC N-terminal domain
CH46_1011	PF00577	Outer membrane usher protein
CH46_1011	PF13953	PapC C-terminal domain
CH46_1012	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH46_1012	PF02753	Pili assembly chaperone PapD, C-terminal domain
CH46_1013	PF00419	Fimbrial protein
CH46_1014	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
CH46_1014	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
CH46_1016	PF13407	Periplasmic binding protein domain
CH46_1017	PF00005	ABC transporter
CH46_1018	PF02653	CH46_1018
CH46_1019	PF12833	Helix-turn-helix domain
CH46_1019	PF13377	Periplasmic binding protein-like domain
CH46_102	PF00482	Type II secretion system (T2SS), protein F
CH46_1021	PF00589	Phage integrase family
CH46_1021	PF13356	Domain of unknown function (DUF4102)
CH46_1023	PF04606	CH46_1023
CH46_1025	PF13737	CH46_1025
CH46_1026	PF01381	Helix-turn-helix
CH46_1028	PF00005	ABC transporter
CH46_1029	PF13310	CH46_1029
CH46_103	PF07963	Prokaryotic N-terminal methylation motif
CH46_103	PF08334	Type II secretion system (T2SS), protein G
CH46_1030	PF01032	FecCD transport family
CH46_1031	PF01032	FecCD transport family
CH46_1032	PF01497	Periplasmic binding protein
CH46_1033	PF13535	ATP-grasp domain
CH46_1034	PF00892	EamA-like transporter family
CH46_1035	PF00156	Phosphoribosyl transferase domain
CH46_1036	PF00291	Pyridoxal-phosphate dependent enzyme
CH46_1037	PF01175	Urocanase
CH46_1037	PF17391	CH46_1037
CH46_1037	PF17392	CH46_1037
CH46_1038	PF00221	Aromatic amino acid lyase
CH46_1039	PF00324	Amino acid permease
CH46_104	PF07963	Prokaryotic N-terminal methylation motif
CH46_1040	PF12146	Putative lysophospholipase
CH46_1041	PF00884	Sulfatase
CH46_1041	PF08019	CH46_1041
CH46_1042	PF00072	Response regulator receiver domain
CH46_1042	PF00196	Bacterial regulatory proteins, luxR family
CH46_1043	PF05231	CH46_1043
CH46_1044	PF00665	Integrase core domain
CH46_1044	PF02796	Helix-turn-helix domain of resolvase
CH46_1045	PF01695	IstB-like ATP binding protein
CH46_1046	PF01695	IstB-like ATP binding protein
CH46_1047	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_1047	PF07730	Histidine kinase
CH46_1048	PF07690	Major Facilitator Superfamily
CH46_105	PF02501	Type II secretion system (T2SS), protein I
CH46_1051	PF05860	haemagglutination activity domain
CH46_1052	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
CH46_1052	PF08479	POTRA domain, ShlB-type
CH46_1052	PF17287	CH46_1052
CH46_1054	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH46_1055	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_1056	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_1056	PF12911	CH46_1056
CH46_1057	PF00005	ABC transporter
CH46_1057	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CH46_1058	PF00005	ABC transporter
CH46_1058	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CH46_1059	PF01270	Glycosyl hydrolases family 8
CH46_106	PF07963	Prokaryotic N-terminal methylation motif
CH46_106	PF11612	Type II secretion system (T2SS), protein J
CH46_1060	PF00563	EAL domain
CH46_1060	PF00990	GGDEF domain
CH46_1060	PF17154	CH46_1060
CH46_1061	PF06178	Oligogalacturonate-specific porin protein (KdgM)
CH46_1062	PF06917	Periplasmic pectate lyase
CH46_1063	PF00754	F5/8 type C domain
CH46_1064	PF00375	Sodium:dicarboxylate symporter family
CH46_1066	PF00675	Insulinase (Peptidase family M16)
CH46_1066	PF05193	Peptidase M16 inactive domain
CH46_1067	PF00294	pfkB family carbohydrate kinase
CH46_1068	PF01361	Tautomerase enzyme
CH46_1069	PF00563	EAL domain
CH46_107	PF03934	Type II secretion system (T2SS), protein K
CH46_1070	PF02611	CDP-diacylglycerol pyrophosphatase
CH46_1071	PF05170	CH46_1071
CH46_1072	PF03631	CH46_1072
CH46_1073	PF03212	Pertactin
CH46_1073	PF03797	Autotransporter beta-domain
CH46_1074	PF11692	CH46_1074
CH46_1075	PF06092	CH46_1075
CH46_1076	PF06092	CH46_1076
CH46_1077	PF02595	Glycerate kinase family
CH46_1078	PF02447	CH46_1078
CH46_1079	PF05651	CH46_1079
CH46_1079	PF13556	PucR C-terminal helix-turn-helix domain
CH46_108	PF05134	Type II secretion system (T2SS), protein L
CH46_108	PF12693	GspL periplasmic domain
CH46_1080	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
CH46_1080	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH46_1081	PF04378	Ribosomal RNA small subunit methyltransferase D, RsmJ
CH46_1082	PF01432	Peptidase family M3
CH46_1083	PF04445	Putative SAM-dependent methyltransferase
CH46_1084	PF08548	Peptidase M10 serralysin C terminal
CH46_1085	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CH46_1085	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
CH46_1086	PF00582	Universal stress protein family
CH46_1087	PF10625	CH46_1087
CH46_1088	PF01797	Transposase IS200 like
CH46_1089	PF01384	CH46_1089
CH46_1090	PF03486	HI0933-like protein
CH46_1091	PF00072	Response regulator receiver domain
CH46_1091	PF00512	His Kinase A (phospho-acceptor) domain
CH46_1091	PF00672	HAMP domain
CH46_1091	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_1091	PF12860	CH46_1091
CH46_1092	PF00005	ABC transporter
CH46_1093	PF02653	CH46_1093
CH46_1094	PF13407	Periplasmic binding protein domain
CH46_1095	PF07385	Protein of unknown function (DUF1498)
CH46_1096	PF01116	Fructose-bisphosphate aldolase class-II
CH46_1097	PF00294	pfkB family carbohydrate kinase
CH46_1098	PF00072	Response regulator receiver domain
CH46_1098	PF00486	Transcriptional regulatory protein, C terminal
CH46_11	PF01571	Aminomethyltransferase folate-binding domain
CH46_11	PF08669	Glycine cleavage T-protein C-terminal barrel domain
CH46_110	PF01478	Type IV leader peptidase family
CH46_110	PF06750	CH46_110
CH46_1100	PF02678	Pirin
CH46_1101	PF00356	Bacterial regulatory proteins, lacI family
CH46_1101	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
CH46_1102	PF02447	CH46_1102
CH46_1103	PF01202	Shikimate kinase
CH46_1107	PF01914	CH46_1107
CH46_1108	PF01118	Semialdehyde dehydrogenase, NAD binding domain
CH46_1108	PF02774	Semialdehyde dehydrogenase, dimerisation domain
CH46_111	PF09691	Bacterial chaperone lipoprotein (PulS_OutS)
CH46_1113	PF01476	LysM domain
CH46_1113	PF02369	Bacterial Ig-like domain (group 1)
CH46_1113	PF11924	Protein of unknown function (DUF3442)
CH46_1116	PF00128	Alpha amylase, catalytic domain
CH46_1116	PF02806	Alpha amylase, C-terminal all-beta domain
CH46_1116	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
CH46_1117	PF00128	Alpha amylase, catalytic domain
CH46_1117	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
CH46_1118	PF00483	Nucleotidyl transferase
CH46_1119	PF00534	Glycosyl transferases group 1
CH46_1119	PF08323	Starch synthase catalytic domain
CH46_112	PF00486	Transcriptional regulatory protein, C terminal
CH46_1120	PF00343	Carbohydrate phosphorylase
CH46_1121	PF01266	FAD dependent oxidoreductase
CH46_1121	PF16901	CH46_1121
CH46_1123	PF06092	CH46_1123
CH46_1124	PF00665	Integrase core domain
CH46_1124	PF13276	CH46_1124
CH46_1125	PF13518	Helix-turn-helix domain
CH46_1126	PF00665	Integrase core domain
CH46_1126	PF02796	Helix-turn-helix domain of resolvase
CH46_1127	PF01695	IstB-like ATP binding protein
CH46_1128	PF13518	Helix-turn-helix domain
CH46_1129	PF00311	Phosphoenolpyruvate carboxylase
CH46_1130	PF01546	Peptidase family M20/M25/M40
CH46_1130	PF07687	Peptidase dimerisation domain
CH46_1131	PF01118	Semialdehyde dehydrogenase, NAD binding domain
CH46_1131	PF02774	Semialdehyde dehydrogenase, dimerisation domain
CH46_1132	PF00696	Amino acid kinase family
CH46_1133	PF00206	Lyase
CH46_1133	PF14698	Argininosuccinate lyase C-terminal
CH46_1135	PF00593	TonB dependent receptor
CH46_1135	PF07715	TonB-dependent Receptor Plug Domain
CH46_1136	PF06438	Heme-binding protein A (HasA)
CH46_1137	PF00005	ABC transporter
CH46_1137	PF00664	ABC transporter transmembrane region
CH46_1138	PF13437	HlyD family secretion protein
CH46_1138	PF13533	Biotin-lipoyl like
CH46_1139	PF03544	Gram-negative bacterial TonB protein C-terminal
CH46_114	PF01323	DSBA-like thioredoxin domain
CH46_1140	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
CH46_1140	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH46_1141	PF00462	Glutaredoxin
CH46_1141	PF08534	Redoxin
CH46_1142	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
CH46_1142	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH46_1143	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_1143	PF03466	LysR substrate binding domain
CH46_1145	PF00440	Bacterial regulatory proteins, tetR family
CH46_1146	PF07226	CH46_1146
CH46_1147	PF05958	tRNA (Uracil-5-)-methyltransferase
CH46_1148	PF00593	TonB dependent receptor
CH46_1148	PF07715	TonB-dependent Receptor Plug Domain
CH46_1149	PF01177	Asp/Glu/Hydantoin racemase
CH46_115	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CH46_115	PF02203	Tar ligand binding domain homologue
CH46_1156	PF13407	Periplasmic binding protein domain
CH46_1157	PF00005	ABC transporter
CH46_1158	PF02653	CH46_1158
CH46_1159	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_1159	PF03466	LysR substrate binding domain
CH46_116	PF00753	Metallo-beta-lactamase superfamily
CH46_1160	PF02653	CH46_1160
CH46_1161	PF04219	CH46_1161
CH46_1162	PF01078	Magnesium chelatase, subunit ChlI
CH46_1162	PF13335	CH46_1162
CH46_1162	PF13541	Subunit ChlI of Mg-chelatase
CH46_1163	PF00205	Thiamine pyrophosphate enzyme, central domain
CH46_1163	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CH46_1163	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
CH46_1164	PF13710	ACT domain
CH46_1165	PF01063	Aminotransferase class IV
CH46_1166	PF00920	Dehydratase family
CH46_1167	PF00291	Pyridoxal-phosphate dependent enzyme
CH46_1167	PF00585	C-terminal regulatory domain of Threonine dehydratase
CH46_1168	PF06092	CH46_1168
CH46_1169	PF06092	CH46_1169
CH46_117	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_117	PF03466	LysR substrate binding domain
CH46_1170	PF06092	CH46_1170
CH46_1174	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_1174	PF03466	LysR substrate binding domain
CH46_1175	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
CH46_1175	PF07991	Acetohydroxy acid isomeroreductase, catalytic domain
CH46_1177	PF06958	S-type Pyocin
CH46_118	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_118	PF03466	LysR substrate binding domain
CH46_1180	PF01320	Colicin immunity protein / pyocin immunity protein
CH46_1181	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH46_1181	PF02753	Pili assembly chaperone PapD, C-terminal domain
CH46_1182	PF00419	Fimbrial protein
CH46_1183	PF00577	Outer membrane usher protein
CH46_1183	PF13953	PapC C-terminal domain
CH46_1183	PF13954	PapC N-terminal domain
CH46_1184	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH46_1184	PF02753	Pili assembly chaperone PapD, C-terminal domain
CH46_1185	PF16970	CH46_1185
CH46_1186	PF00872	CH46_1186
CH46_1187	PF05096	Glutamine cyclotransferase
CH46_1188	PF13616	PPIC-type PPIASE domain
CH46_1189	PF00580	UvrD/REP helicase N-terminal domain
CH46_1189	PF13361	UvrD-like helicase C-terminal domain
CH46_119	PF07690	Major Facilitator Superfamily
CH46_1192	PF00270	DEAD/DEAH box helicase
CH46_1192	PF00271	Helicase conserved C-terminal domain
CH46_1193	PF00085	Thioredoxin
CH46_1194	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CH46_1194	PF07497	Rho termination factor, RNA-binding domain
CH46_1194	PF07498	Rho termination factor, N-terminal domain
CH46_1195	PF00953	Glycosyl transferase family 4
CH46_1196	PF02706	Chain length determinant protein
CH46_1197	PF02350	UDP-N-acetylglucosamine 2-epimerase
CH46_1198	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
CH46_1198	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
CH46_1198	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
CH46_1199	PF16363	CH46_1199
CH46_12	PF01597	Glycine cleavage H-protein
CH46_120	PF00356	Bacterial regulatory proteins, lacI family
CH46_120	PF13377	Periplasmic binding protein-like domain
CH46_1200	PF00483	Nucleotidyl transferase
CH46_1201	PF00583	Acetyltransferase (GNAT) family
CH46_1202	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
CH46_1203	PF01943	CH46_1203
CH46_1204	PF07429	CH46_1204
CH46_1205	PF06899	CH46_1205
CH46_1206	PF03808	CH46_1206
CH46_1207	PF00324	Amino acid permease
CH46_121	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
CH46_121	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
CH46_1213	PF01797	Transposase IS200 like
CH46_1214	PF07219	CH46_1214
CH46_1215	PF04375	CH46_1215
CH46_1216	PF02602	Uroporphyrinogen-III synthase HemD
CH46_1217	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
CH46_1217	PF03900	Porphobilinogen deaminase, C-terminal domain
CH46_1218	PF01295	CH46_1218
CH46_1218	PF12633	CH46_1218
CH46_1219	PF01491	Frataxin-like domain
CH46_122	PF00384	Molybdopterin oxidoreductase
CH46_122	PF01568	Molydopterin dinucleotide binding domain
CH46_1220	PF13627	CH46_1220
CH46_1221	PF01678	Diaminopimelate epimerase
CH46_1222	PF04340	Protein of unknown function, DUF484
CH46_1223	PF00589	Phage integrase family
CH46_1223	PF02899	Phage integrase, N-terminal SAM-like domain
CH46_1224	PF00702	haloacid dehalogenase-like hydrolase
CH46_1225	PF00580	UvrD/REP helicase N-terminal domain
CH46_1225	PF13361	UvrD-like helicase C-terminal domain
CH46_1226	PF00440	Bacterial regulatory proteins, tetR family
CH46_1227	PF06792	Uncharacterised protein family (UPF0261)
CH46_1228	PF09370	TIM-barrel signal transduction protein
CH46_1229	PF01544	CorA-like Mg2+ transporter protein
CH46_123	PF00501	AMP-binding enzyme
CH46_123	PF01553	Acyltransferase
CH46_123	PF13193	AMP-binding enzyme C-terminal domain
CH46_1230	PF00892	EamA-like transporter family
CH46_1231	PF03061	Thioesterase superfamily
CH46_1232	PF02253	Phospholipase A1
CH46_1233	PF00270	DEAD/DEAH box helicase
CH46_1233	PF00271	Helicase conserved C-terminal domain
CH46_1233	PF00570	HRDC domain
CH46_1233	PF09382	RQC domain
CH46_1233	PF16124	CH46_1233
CH46_1234	PF01810	CH46_1234
CH46_1235	PF01810	CH46_1235
CH46_1236	PF12146	Putative lysophospholipase
CH46_1237	PF08282	haloacid dehalogenase-like hydrolase
CH46_1238	PF03272	CH46_1238
CH46_1239	PF03009	Glycerophosphoryl diester phosphodiesterase family
CH46_124	PF07690	Major Facilitator Superfamily
CH46_1240	PF01266	FAD dependent oxidoreductase
CH46_1240	PF04324	BFD-like [2Fe-2S] binding domain
CH46_1241	PF00890	FAD binding domain
CH46_1242	PF02754	CH46_1242
CH46_1243	PF08786	Domain of unknown function (DUF1795)
CH46_1244	PF02592	CH46_1244
CH46_1245	PF01206	Sulfurtransferase TusA
CH46_1246	PF00122	E1-E2 ATPase
CH46_1246	PF00403	Heavy-metal-associated domain
CH46_1246	PF00702	haloacid dehalogenase-like hydrolase
CH46_1247	PF07947	CH46_1247
CH46_1248	PF08850	CH46_1248
CH46_1249	PF10694	Protein of unknown function (DUF2500)
CH46_1250	PF06611	CH46_1250
CH46_1251	PF03602	Conserved hypothetical protein 95
CH46_1252	PF00448	SRP54-type protein, GTPase domain
CH46_1252	PF02881	SRP54-type protein, helical bundle domain
CH46_1253	PF00005	ABC transporter
CH46_1254	PF02687	CH46_1254
CH46_1255	PF00140	Sigma-70 factor, region 1
CH46_1255	PF04542	Sigma-70 region 2
CH46_1255	PF04545	Sigma-70, region 4
CH46_1256	PF01797	Transposase IS200 like
CH46_1257	PF12568	Acetyltransferase (GNAT) domain
CH46_1258	PF13458	Periplasmic binding protein
CH46_1259	PF02653	CH46_1259
CH46_1260	PF02653	CH46_1260
CH46_1260	PF11862	CH46_1260
CH46_1261	PF00005	ABC transporter
CH46_1261	PF12399	Branched-chain amino acid ATP-binding cassette transporter
CH46_1262	PF00005	ABC transporter
CH46_1268	PF16967	CH46_1268
CH46_1269	PF04449	CS1 type fimbrial major subunit
CH46_127	PF00248	Aldo/keto reductase family
CH46_1270	PF13416	Bacterial extracellular solute-binding protein
CH46_1271	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_1272	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_1273	PF00005	ABC transporter
CH46_1273	PF08402	TOBE domain
CH46_1274	PF03009	Glycerophosphoryl diester phosphodiesterase family
CH46_1275	PF03547	CH46_1275
CH46_1276	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_1276	PF03466	LysR substrate binding domain
CH46_1277	PF00892	EamA-like transporter family
CH46_1278	PF01717	Cobalamin-independent synthase, Catalytic domain
CH46_1278	PF08267	Cobalamin-independent synthase, N-terminal domain
CH46_1279	PF01738	Dienelactone hydrolase family
CH46_128	PF02976	DNA mismatch repair enzyme MutH
CH46_1280	PF01048	Phosphorylase superfamily
CH46_1281	PF13350	Tyrosine phosphatase family
CH46_1282	PF02554	CH46_1282
CH46_1282	PF13722	CH46_1282
CH46_1283	PF09335	CH46_1283
CH46_1284	PF02646	CH46_1284
CH46_1285	PF01209	ubiE/COQ5 methyltransferase family
CH46_1286	PF02036	SCP-2 sterol transfer family
CH46_1287	PF03109	CH46_1287
CH46_1288	PF02416	mttA/Hcf106 family
CH46_129	PF00293	NUDIX domain
CH46_1290	PF00902	Sec-independent protein translocase protein (TatC)
CH46_1291	PF01026	TatD related DNase
CH46_1292	PF00665	Integrase core domain
CH46_1292	PF02796	Helix-turn-helix domain of resolvase
CH46_1293	PF01695	IstB-like ATP binding protein
CH46_1294	PF01026	TatD related DNase
CH46_1295	PF00490	Delta-aminolevulinic acid dehydratase
CH46_1296	PF02357	Transcription termination factor nusG
CH46_1297	PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
CH46_1298	PF00175	Oxidoreductase NAD-binding domain
CH46_1298	PF00970	Oxidoreductase FAD-binding domain
CH46_1299	PF00108	Thiolase, N-terminal domain
CH46_1299	PF02803	Thiolase, C-terminal domain
CH46_13	PF02347	Glycine cleavage system P-protein
CH46_130	PF00391	PEP-utilising enzyme, mobile domain
CH46_130	PF01590	GAF domain
CH46_130	PF02896	PEP-utilising enzyme, TIM barrel domain
CH46_130	PF05524	PEP-utilising enzyme, N-terminal
CH46_1300	PF00378	Enoyl-CoA hydratase/isomerase family
CH46_1300	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
CH46_1300	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
CH46_1301	PF00557	Metallopeptidase family M24
CH46_1302	PF01205	Uncharacterized protein family UPF0029
CH46_1303	PF01797	Transposase IS200 like
CH46_1304	PF01205	Uncharacterized protein family UPF0029
CH46_1304	PF09186	Domain of unknown function (DUF1949)
CH46_1305	PF02386	Cation transport protein
CH46_1306	PF12724	Flavodoxin domain
CH46_131	PF01790	CH46_131
CH46_1313	PF01565	FAD binding domain
CH46_1313	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
CH46_1314	PF02237	Biotin protein ligase C terminal domain
CH46_1314	PF03099	Biotin/lipoate A/B protein ligase family
CH46_1314	PF08279	HTH domain
CH46_1315	PF00485	Phosphoribulokinase / Uridine kinase family
CH46_1316	PF13673	Acetyltransferase (GNAT) domain
CH46_1317	PF00665	Integrase core domain
CH46_1317	PF02796	Helix-turn-helix domain of resolvase
CH46_1318	PF01695	IstB-like ATP binding protein
CH46_132	PF00303	Thymidylate synthase
CH46_1323	PF00009	Elongation factor Tu GTP binding domain
CH46_1323	PF03143	Elongation factor Tu C-terminal domain
CH46_1323	PF03144	Elongation factor Tu domain 2
CH46_1324	PF00584	SecE/Sec61-gamma subunits of protein translocation complex
CH46_1325	PF00467	KOW motif
CH46_1325	PF02357	Transcription termination factor nusG
CH46_1326	PF00298	Ribosomal protein L11, RNA binding domain
CH46_1326	PF03946	Ribosomal protein L11, N-terminal domain
CH46_1327	PF00687	Ribosomal protein L1p/L10e family
CH46_1328	PF00466	Ribosomal protein L10
CH46_1329	PF00542	Ribosomal protein L7/L12 C-terminal domain
CH46_1329	PF16320	CH46_1329
CH46_1330	PF00562	RNA polymerase Rpb2, domain 6
CH46_1330	PF04560	RNA polymerase Rpb2, domain 7
CH46_1330	PF04561	RNA polymerase Rpb2, domain 2
CH46_1330	PF04563	RNA polymerase beta subunit
CH46_1330	PF04565	RNA polymerase Rpb2, domain 3
CH46_1330	PF10385	RNA polymerase beta subunit external 1 domain
CH46_1331	PF00623	RNA polymerase Rpb1, domain 2
CH46_1331	PF04983	RNA polymerase Rpb1, domain 3
CH46_1331	PF04997	RNA polymerase Rpb1, domain 1
CH46_1331	PF04998	RNA polymerase Rpb1, domain 5
CH46_1331	PF05000	RNA polymerase Rpb1, domain 4
CH46_1332	PF01797	Transposase IS200 like
CH46_1333	PF04055	Radical SAM superfamily
CH46_1333	PF06968	Biotin and Thiamin Synthesis associated domain
CH46_1334	PF05690	Thiazole biosynthesis protein ThiG
CH46_1335	PF02597	ThiS family
CH46_1336	PF00899	ThiF family
CH46_1337	PF02581	Thiamine monophosphate synthase/TENI
CH46_1338	PF01964	ThiC family
CH46_1338	PF13667	ThiC-associated domain
CH46_1339	PF04353	Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
CH46_134	PF07963	Prokaryotic N-terminal methylation motif
CH46_1340	PF00293	NUDIX domain
CH46_1340	PF09297	NADH pyrophosphatase zinc ribbon domain
CH46_1342	PF01208	Uroporphyrinogen decarboxylase (URO-D)
CH46_1343	PF04493	Endonuclease V
CH46_1344	PF04222	Protein of unknown function (DUF416)
CH46_1345	PF00216	Bacterial DNA-binding protein
CH46_1346	PF07356	CH46_1346
CH46_1347	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
CH46_1347	PF02843	Phosphoribosylglycinamide synthetase, C domain
CH46_1347	PF02844	Phosphoribosylglycinamide synthetase, N domain
CH46_1348	PF01808	AICARFT/IMPCHase bienzyme
CH46_1348	PF02142	MGS-like domain
CH46_135	PF00665	Integrase core domain
CH46_135	PF02796	Helix-turn-helix domain of resolvase
CH46_1359	PF04204	Homoserine O-succinyltransferase
CH46_1360	PF01274	Malate synthase
CH46_1361	PF00463	Isocitrate lyase family
CH46_1362	PF06315	Isocitrate dehydrogenase kinase/phosphatase (AceK)
CH46_1363	PF01614	Bacterial transcriptional regulator
CH46_1364	PF09339	IclR helix-turn-helix domain
CH46_1365	PF00809	Pterin binding enzyme
CH46_1365	PF02310	B12 binding domain
CH46_1365	PF02574	Homocysteine S-methyltransferase
CH46_1365	PF02607	B12 binding domain
CH46_1365	PF02965	Vitamin B12 dependent methionine synthase, activation domain
CH46_1366	PF05860	haemagglutination activity domain
CH46_1366	PF13332	CH46_1366
CH46_1367	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
CH46_1367	PF08479	POTRA domain, ShlB-type
CH46_1367	PF17287	CH46_1367
CH46_1368	PF00696	Amino acid kinase family
CH46_1369	PF00342	Phosphoglucose isomerase
CH46_137	PF01695	IstB-like ATP binding protein
CH46_1370	PF06146	CH46_1370
CH46_1371	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_1372	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_1372	PF14785	Maltose transport system permease protein MalF P2 domain
CH46_1373	PF13416	Bacterial extracellular solute-binding protein
CH46_1375	PF00005	ABC transporter
CH46_1375	PF08402	TOBE domain
CH46_1376	PF02264	LamB porin
CH46_1377	PF07148	CH46_1377
CH46_1379	PF05638	Protein of unknown function (DUF796)
CH46_138	PF00501	AMP-binding enzyme
CH46_138	PF00550	Phosphopantetheine attachment site
CH46_138	PF00668	Condensation domain
CH46_1380	PF05591	CH46_1380
CH46_1381	PF05943	CH46_1381
CH46_1382	PF04965	Gene 25-like lysozyme
CH46_1383	PF00665	Integrase core domain
CH46_1383	PF13276	CH46_1383
CH46_1384	PF05947	CH46_1384
CH46_1385	PF13518	Helix-turn-helix domain
CH46_1386	PF05947	CH46_1386
CH46_1387	PF06996	CH46_1387
CH46_1389	PF12790	Type VI secretion lipoprotein
CH46_139	PF00501	AMP-binding enzyme
CH46_139	PF00550	Phosphopantetheine attachment site
CH46_1390	PF05936	CH46_1390
CH46_1391	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
CH46_1392	PF00004	ATPase family associated with various cellular activities (AAA)
CH46_1392	PF07724	AAA domain (Cdc48 subfamily)
CH46_1392	PF10431	C-terminal, D2-small domain, of ClpB protein
CH46_1393	PF02954	Bacterial regulatory protein, Fis family
CH46_1394	PF11319	CH46_1394
CH46_1395	PF06812	CH46_1395
CH46_1395	PF16989	CH46_1395
CH46_1396	PF06744	CH46_1396
CH46_1396	PF06761	CH46_1396
CH46_1396	PF14331	CH46_1396
CH46_1397	PF06812	CH46_1397
CH46_1398	PF12486	CH46_1398
CH46_1399	PF05954	Phage late control gene D protein (GPD)
CH46_14	PF13924	CH46_14
CH46_140	PF00501	AMP-binding enzyme
CH46_140	PF00550	Phosphopantetheine attachment site
CH46_140	PF00668	Condensation domain
CH46_140	PF00975	Thioesterase domain
CH46_140	PF08242	Methyltransferase domain
CH46_1400	PF08786	Domain of unknown function (DUF1795)
CH46_1401	PF05488	PAAR motif
CH46_1401	PF05593	CH46_1401
CH46_1402	PF03527	CH46_1402
CH46_1402	PF14414	CH46_1402
CH46_1403	PF09346	SMI1 / KNR4 family (SUKH-1)
CH46_1405	PF08845	CH46_1405
CH46_1406	PF01381	Helix-turn-helix
CH46_1407	PF12486	CH46_1407
CH46_1408	PF05954	Phage late control gene D protein (GPD)
CH46_1409	PF08786	Domain of unknown function (DUF1795)
CH46_1410	PF03527	CH46_1410
CH46_1410	PF05488	PAAR motif
CH46_1410	PF05593	CH46_1410
CH46_1412	PF01261	Xylose isomerase-like TIM barrel
CH46_1413	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
CH46_1414	PF02311	AraC-like ligand binding domain
CH46_1414	PF12833	Helix-turn-helix domain
CH46_1415	PF05025	RbsD / FucU transport protein family
CH46_1416	PF00294	pfkB family carbohydrate kinase
CH46_1417	PF01791	DeoC/LacD family aldolase
CH46_1418	PF03358	NADPH-dependent FMN reductase
CH46_1419	PF09084	NMT1/THI5 like
CH46_1420	PF00296	Luciferase-like monooxygenase
CH46_1421	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_1422	PF00005	ABC transporter
CH46_1423	PF04221	RelB antitoxin
CH46_1424	PF00860	Permease family
CH46_1425	PF00999	Sodium/hydrogen exchanger family
CH46_1427	PF03279	CH46_1427
CH46_1428	PF13407	Periplasmic binding protein domain
CH46_1429	PF00005	ABC transporter
CH46_143	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
CH46_1430	PF02653	CH46_1430
CH46_1431	PF02653	CH46_1431
CH46_1432	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
CH46_1432	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
CH46_1433	PF01380	SIS domain
CH46_1434	PF02798	Glutathione S-transferase, N-terminal domain
CH46_1434	PF13410	Glutathione S-transferase, C-terminal domain
CH46_1435	PF13449	Esterase-like activity of phytase
CH46_1437	PF01797	Transposase IS200 like
CH46_1438	PF00313	'Cold-shock' DNA-binding domain
CH46_1439	PF00313	'Cold-shock' DNA-binding domain
CH46_144	PF00975	Thioesterase domain
CH46_1440	PF05433	CH46_1440
CH46_1441	PF00753	Metallo-beta-lactamase superfamily
CH46_1442	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
CH46_1442	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
CH46_1443	PF02627	Carboxymuconolactone decarboxylase family
CH46_1444	PF07690	Major Facilitator Superfamily
CH46_1445	PF00392	Bacterial regulatory proteins, gntR family
CH46_1445	PF07729	FCD domain
CH46_1447	PF02954	Bacterial regulatory protein, Fis family
CH46_1448	PF01207	Dihydrouridine synthase (Dus)
CH46_1449	PF06325	Ribosomal protein L11 methyltransferase (PrmA)
CH46_145	PF07690	Major Facilitator Superfamily
CH46_1450	PF00474	Sodium:solute symporter family
CH46_1451	PF06196	CH46_1451
CH46_1453	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
CH46_1453	PF02785	Biotin carboxylase C-terminal domain
CH46_1453	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
CH46_1454	PF00364	Biotin-requiring enzyme
CH46_1455	PF01220	Dehydroquinase class II
CH46_1456	PF01794	CH46_1456
CH46_1457	PF00174	Oxidoreductase molybdopterin binding domain
CH46_1458	PF00107	Zinc-binding dehydrogenase
CH46_1458	PF08240	Alcohol dehydrogenase GroES-like domain
CH46_1459	PF00563	EAL domain
CH46_1459	PF00990	GGDEF domain
CH46_1459	PF17157	CH46_1459
CH46_146	PF00005	ABC transporter
CH46_146	PF00664	ABC transporter transmembrane region
CH46_1460	PF06723	MreB/Mbl protein
CH46_1461	PF04085	rod shape-determining protein MreC
CH46_1462	PF04093	CH46_1462
CH46_1463	PF02545	Maf-like protein
CH46_1464	PF00575	S1 RNA binding domain
CH46_1464	PF10150	Ribonuclease E/G family
CH46_1465	PF13116	CH46_1465
CH46_1465	PF13502	CH46_1465
CH46_1466	PF00795	Carbon-nitrogen hydrolase
CH46_1467	PF01523	Putative modulator of DNA gyrase
CH46_1469	PF00782	Dual specificity phosphatase, catalytic domain
CH46_147	PF00005	ABC transporter
CH46_147	PF00664	ABC transporter transmembrane region
CH46_1470	PF10828	CH46_1470
CH46_1471	PF13539	D-alanyl-D-alanine carboxypeptidase
CH46_1472	PF16083	CH46_1472
CH46_1473	PF03534	Salmonella virulence plasmid 65kDa B protein
CH46_1473	PF12255	Insecticide toxin TcdB middle/C-terminal region
CH46_1473	PF12256	Insecticide toxin TcdB middle/N-terminal region
CH46_1476	PF03538	Salmonella virulence plasmid 28
CH46_1477	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_1478	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_1478	PF03466	LysR substrate binding domain
CH46_1479	PF07869	CH46_1479
CH46_1480	PF13437	HlyD family secretion protein
CH46_1480	PF13533	Biotin-lipoyl like
CH46_1481	PF04632	CH46_1481
CH46_1482	PF00171	Aldehyde dehydrogenase family
CH46_1483	PF00171	Aldehyde dehydrogenase family
CH46_1484	PF00545	ribonuclease
CH46_1485	PF01337	Barstar (barnase inhibitor)
CH46_1486	PF04751	Protein of unknown function (DUF615)
CH46_1487	PF01523	Putative modulator of DNA gyrase
CH46_1489	PF07361	Cytochrome b562
CH46_1490	PF01272	Transcription elongation factor, GreA/GreB, C-term
CH46_1490	PF14760	Rnk N-terminus
CH46_1491	PF00128	Alpha amylase, catalytic domain
CH46_1491	PF11941	Domain of unknown function (DUF3459)
CH46_1492	PF00367	phosphotransferase system, EIIB
CH46_1492	PF02378	Phosphotransferase system, EIIC
CH46_1493	PF00356	Bacterial regulatory proteins, lacI family
CH46_1493	PF13377	Periplasmic binding protein-like domain
CH46_1494	PF16743	CH46_1494
CH46_1495	PF01695	IstB-like ATP binding protein
CH46_1496	PF01695	IstB-like ATP binding protein
CH46_1501	PF01042	Endoribonuclease L-PSP
CH46_1502	PF01948	Aspartate carbamoyltransferase regulatory chain, allosteric domain
CH46_1502	PF02748	Aspartate carbamoyltransferase regulatory chain, metal binding domain
CH46_1503	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
CH46_1503	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
CH46_1504	PF00381	PTS HPr component phosphorylation site
CH46_1505	PF03668	CH46_1505
CH46_1506	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
CH46_1507	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
CH46_1508	PF00309	CH46_1508
CH46_1508	PF04552	Sigma-54, DNA binding domain
CH46_1508	PF04963	Sigma-54 factor, core binding domain
CH46_1509	PF00005	ABC transporter
CH46_1509	PF12399	Branched-chain amino acid ATP-binding cassette transporter
CH46_151	PF02447	CH46_151
CH46_1510	PF03968	OstA-like protein
CH46_1511	PF06835	Lipopolysaccharide-assembly, LptC-related
CH46_1512	PF08282	haloacid dehalogenase-like hydrolase
CH46_1513	PF00571	CBS domain
CH46_1513	PF01380	SIS domain
CH46_1514	PF01699	Sodium/calcium exchanger protein
CH46_1515	PF00005	ABC transporter
CH46_1516	PF02405	CH46_1516
CH46_1517	PF02470	CH46_1517
CH46_1518	PF05494	Toluene tolerance, Ttg2
CH46_1519	PF13466	STAS domain
CH46_1520	PF01722	BolA-like protein
CH46_1521	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
CH46_1522	PF13180	PDZ domain
CH46_1522	PF13365	Trypsin-like peptidase domain
CH46_1523	PF01797	Transposase IS200 like
CH46_1524	PF00595	PDZ domain (Also known as DHR or GLGF)
CH46_1524	PF13180	PDZ domain
CH46_1524	PF13365	Trypsin-like peptidase domain
CH46_1525	PF06295	CH46_1525
CH46_1526	PF03969	AFG1-like ATPase
CH46_1527	PF00572	Ribosomal protein L13
CH46_1528	PF00380	Ribosomal protein S9/S16
CH46_1529	PF00043	Glutathione S-transferase, C-terminal domain
CH46_1529	PF02798	Glutathione S-transferase, N-terminal domain
CH46_153	PF03797	Autotransporter beta-domain
CH46_1530	PF04386	Stringent starvation protein B
CH46_1532	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH46_1532	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
CH46_1533	PF00310	Glutamine amidotransferases class-II
CH46_1533	PF01493	GXGXG motif
CH46_1533	PF01645	Conserved region in glutamate synthase
CH46_1533	PF04898	Glutamate synthase central domain
CH46_1534	PF04055	Radical SAM superfamily
CH46_1534	PF16199	CH46_1534
CH46_1535	PF00072	Response regulator receiver domain
CH46_1535	PF00512	His Kinase A (phospho-acceptor) domain
CH46_1535	PF00989	PAS fold
CH46_1535	PF01627	Hpt domain
CH46_1535	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_1537	PF00912	Transglycosylase
CH46_1538	PF04972	BON domain
CH46_1539	PF13580	SIS domain
CH46_154	PF05954	Phage late control gene D protein (GPD)
CH46_154	PF06715	Gp5 C-terminal repeat (3 copies)
CH46_1540	PF02021	Uncharacterised protein family UPF0102
CH46_1541	PF04348	LppC putative lipoprotein
CH46_1542	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
CH46_1543	PF02678	Pirin
CH46_1544	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_1544	PF03466	LysR substrate binding domain
CH46_1545	PF13409	Glutathione S-transferase, N-terminal domain
CH46_1545	PF13410	Glutathione S-transferase, C-terminal domain
CH46_1546	PF01695	IstB-like ATP binding protein
CH46_1547	PF00665	Integrase core domain
CH46_1547	PF02796	Helix-turn-helix domain of resolvase
CH46_1548	PF00326	Prolyl oligopeptidase family
CH46_1550	PF01250	Ribosomal protein S6
CH46_1551	PF01084	Ribosomal protein S18
CH46_1552	PF01281	Ribosomal protein L9, N-terminal domain
CH46_1552	PF03948	Ribosomal protein L9, C-terminal domain
CH46_1553	PF01797	Transposase IS200 like
CH46_1554	PF12582	CH46_1554
CH46_1555	PF04225	Opacity-associated protein A LysM-like domain
CH46_1555	PF08525	CH46_1555
CH46_1556	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
CH46_1556	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
CH46_1557	PF01814	Hemerythrin HHE cation binding domain
CH46_1557	PF04405	CH46_1557
CH46_1558	PF00149	Calcineurin-like phosphoesterase
CH46_1558	PF02872	5'-nucleotidase, C-terminal domain
CH46_1559	PF00459	Inositol monophosphatase family
CH46_156	PF03527	CH46_156
CH46_156	PF05593	CH46_156
CH46_1560	PF09695	CH46_1560
CH46_1561	PF06526	Protein of unknown function (DUF1107)
CH46_1562	PF00571	CBS domain
CH46_1562	PF01595	CH46_1562
CH46_1562	PF03471	Transporter associated domain
CH46_1563	PF01625	Peptide methionine sulfoxide reductase
CH46_1564	PF01103	Surface antigen
CH46_1564	PF07244	Surface antigen variable number repeat
CH46_1564	PF17243	CH46_1564
CH46_1565	PF04357	CH46_1565
CH46_1566	PF06094	AIG2-like family
CH46_1567	PF00719	Inorganic pyrophosphatase
CH46_1568	PF00316	Fructose-1-6-bisphosphatase
CH46_1569	PF01225	Mur ligase family, catalytic domain
CH46_1569	PF02875	Mur ligase family, glutamate ligase domain
CH46_1569	PF08245	Mur ligase middle domain
CH46_1570	PF07338	Protein of unknown function (DUF1471)
CH46_1571	PF01316	Arginine repressor, DNA binding domain
CH46_1571	PF02863	Arginine repressor, C-terminal domain
CH46_1572	PF00056	lactate/malate dehydrogenase, NAD binding domain
CH46_1572	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
CH46_1573	PF13693	Winged helix-turn-helix DNA-binding
CH46_1574	PF02316	Mu DNA-binding domain
CH46_1575	PF00348	Polyprenyl synthetase
CH46_1576	PF00829	Ribosomal prokaryotic L21 protein
CH46_1577	PF01016	Ribosomal L27 protein
CH46_1578	PF00892	EamA-like transporter family
CH46_1579	PF01018	GTP1/OBG
CH46_1579	PF01926	50S ribosome-binding GTPase
CH46_1580	PF00512	His Kinase A (phospho-acceptor) domain
CH46_1580	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_1581	PF00072	Response regulator receiver domain
CH46_1581	PF00486	Transcriptional regulatory protein, C terminal
CH46_1582	PF02113	D-Ala-D-Ala carboxypeptidase 3 (S13) family
CH46_1583	PF01272	Transcription elongation factor, GreA/GreB, C-term
CH46_1583	PF03449	Transcription elongation factor, N-terminal
CH46_1584	PF01985	CRS1 / YhbY (CRM) domain
CH46_1585	PF01728	FtsJ-like methyltransferase
CH46_1586	PF00004	ATPase family associated with various cellular activities (AAA)
CH46_1586	PF01434	Peptidase family M41
CH46_1586	PF06480	FtsH Extracellular
CH46_1587	PF00809	Pterin binding enzyme
CH46_1588	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
CH46_1588	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
CH46_1588	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
CH46_1588	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
CH46_1589	PF03840	Preprotein translocase SecG subunit
CH46_159	PF00939	Sodium:sulfate symporter transmembrane region
CH46_1592	PF02576	Uncharacterised BCR, YhbC family COG0779
CH46_1592	PF17384	CH46_1592
CH46_1593	PF08529	NusA N-terminal domain
CH46_1593	PF13184	NusA-like KH domain
CH46_1593	PF14520	Helix-hairpin-helix domain
CH46_1594	PF00009	Elongation factor Tu GTP binding domain
CH46_1594	PF03144	Elongation factor Tu domain 2
CH46_1594	PF04760	Translation initiation factor IF-2, N-terminal region
CH46_1594	PF08364	CH46_1594
CH46_1594	PF11987	Translation-initiation factor 2
CH46_1595	PF02033	Ribosome-binding factor A
CH46_1596	PF01509	TruB family pseudouridylate synthase (N terminal domain)
CH46_1596	PF09157	Pseudouridine synthase II TruB, C-terminal
CH46_1596	PF16198	CH46_1596
CH46_1597	PF00312	Ribosomal protein S15
CH46_1598	PF13518	Helix-turn-helix domain
CH46_1599	PF00665	Integrase core domain
CH46_1599	PF13276	CH46_1599
CH46_16	PF03895	YadA-like C-terminal region
CH46_16	PF05658	Head domain of trimeric autotransporter adhesin
CH46_16	PF05662	Coiled stalk of trimeric autotransporter adhesin
CH46_160	PF00356	Bacterial regulatory proteins, lacI family
CH46_160	PF13377	Periplasmic binding protein-like domain
CH46_1600	PF00013	KH domain
CH46_1600	PF00575	S1 RNA binding domain
CH46_1600	PF01138	3' exoribonuclease family, domain 1
CH46_1600	PF03725	3' exoribonuclease family, domain 2
CH46_1600	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
CH46_1601	PF07719	Tetratricopeptide repeat
CH46_1601	PF13181	Tetratricopeptide repeat
CH46_1602	PF00270	DEAD/DEAH box helicase
CH46_1602	PF00271	Helicase conserved C-terminal domain
CH46_1602	PF03880	DbpA RNA binding domain
CH46_1602	PF12343	CH46_1602
CH46_1603	PF05973	CH46_1603
CH46_1604	PF01381	Helix-turn-helix
CH46_1605	PF00296	Luciferase-like monooxygenase
CH46_1607	PF16576	CH46_1607
CH46_1608	PF00873	AcrB/AcrD/AcrF family
CH46_1609	PF02321	Outer membrane efflux protein
CH46_161	PF00665	Integrase core domain
CH46_161	PF13276	CH46_161
CH46_1610	PF01136	CH46_1610
CH46_1611	PF01136	CH46_1611
CH46_1612	PF02036	SCP-2 sterol transfer family
CH46_1613	PF00583	Acetyltransferase (GNAT) family
CH46_1614	PF01541	GIY-YIG catalytic domain
CH46_1615	PF05426	Alginate lyase
CH46_1615	PF07940	Heparinase II/III-like protein
CH46_1616	PF05426	Alginate lyase
CH46_1617	PF01547	Bacterial extracellular solute-binding protein
CH46_1618	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_1619	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_162	PF00150	Cellulase (glycosyl hydrolase family 5)
CH46_1620	PF00005	ABC transporter
CH46_1620	PF08402	TOBE domain
CH46_1621	PF05426	Alginate lyase
CH46_1624	PF12706	Beta-lactamase superfamily domain
CH46_1625	PF13238	AAA domain
CH46_1626	PF07969	Amidohydrolase family
CH46_1627	PF00005	ABC transporter
CH46_1628	PF00005	ABC transporter
CH46_1629	PF06007	CH46_1629
CH46_163	PF13518	Helix-turn-helix domain
CH46_1630	PF05861	CH46_1630
CH46_1631	PF05845	Bacterial phosphonate metabolism protein (PhnH)
CH46_1632	PF06754	CH46_1632
CH46_1633	PF00392	Bacterial regulatory proteins, gntR family
CH46_1633	PF07702	UTRA domain
CH46_1635	PF13353	4Fe-4S single cluster domain
CH46_1636	PF03477	ATP cone domain
CH46_1636	PF13597	Anaerobic ribonucleoside-triphosphate reductase
CH46_1637	PF00005	ABC transporter
CH46_1638	PF00005	ABC transporter
CH46_1639	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_1639	PF12911	CH46_1639
CH46_1640	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_1643	PF04074	Domain of unknown function (DUF386)
CH46_1644	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
CH46_1644	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
CH46_1645	PF06877	Regulator of ribonuclease activity B
CH46_1646	PF00583	Acetyltransferase (GNAT) family
CH46_1647	PF00133	tRNA synthetases class I (I, L, M and V)
CH46_1647	PF08264	Anticodon-binding domain of tRNA
CH46_1647	PF10458	Valyl tRNA synthetase tRNA binding arm
CH46_1648	PF04364	DNA polymerase III chi subunit, HolC
CH46_1649	PF00883	Cytosol aminopeptidase family, catalytic domain
CH46_1649	PF02789	Cytosol aminopeptidase family, N-terminal domain
CH46_1650	PF03739	CH46_1650
CH46_1651	PF03739	CH46_1651
CH46_1653	PF00589	Phage integrase family
CH46_1653	PF13356	Domain of unknown function (DUF4102)
CH46_1654	PF03235	CH46_1654
CH46_1654	PF07510	CH46_1654
CH46_1655	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_1656	PF01695	IstB-like ATP binding protein
CH46_1658	PF00665	Integrase core domain
CH46_1658	PF02796	Helix-turn-helix domain of resolvase
CH46_1659	PF03884	Domain of unknown function (DUF329)
CH46_166	PF05656	CH46_166
CH46_1660	PF07072	Protein of unknown function (DUF1342)
CH46_1661	PF01121	Dephospho-CoA kinase
CH46_1662	PF00478	IMP dehydrogenase / GMP reductase domain
CH46_1663	PF00482	Type II secretion system (T2SS), protein F
CH46_1664	PF00437	Type II/IV secretion system protein
CH46_1665	PF07963	Prokaryotic N-terminal methylation motif
CH46_1666	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
CH46_1666	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
CH46_1667	PF01510	N-acetylmuramoyl-L-alanine amidase
CH46_1668	PF17113	CH46_1668
CH46_1669	PF00324	Amino acid permease
CH46_1670	PF00392	Bacterial regulatory proteins, gntR family
CH46_1670	PF07729	FCD domain
CH46_1671	PF00456	Transketolase, thiamine diphosphate binding domain
CH46_1672	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
CH46_1672	PF00364	Biotin-requiring enzyme
CH46_1672	PF02817	e3 binding domain
CH46_1673	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
CH46_1673	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH46_1674	PF01797	Transposase IS200 like
CH46_1675	PF00330	Aconitase family (aconitate hydratase)
CH46_1675	PF06434	Aconitate hydratase 2 N-terminus
CH46_1675	PF11791	Aconitate B N-terminal domain
CH46_1676	PF06062	CH46_1676
CH46_1677	PF00892	EamA-like transporter family
CH46_1678	PF02675	S-adenosylmethionine decarboxylase
CH46_1679	PF01564	Spermine/spermidine synthase
CH46_1679	PF17284	CH46_1679
CH46_1680	PF09691	Bacterial chaperone lipoprotein (PulS_OutS)
CH46_1681	PF00394	Multicopper oxidase
CH46_1681	PF07731	Multicopper oxidase
CH46_1681	PF07732	Multicopper oxidase
CH46_1681	PF10518	TAT (twin-arginine translocation) pathway signal sequence
CH46_1682	PF00156	Phosphoribosyl transferase domain
CH46_1683	PF00484	Carbonic anhydrase
CH46_1684	PF00005	ABC transporter
CH46_1685	PF01061	CH46_1685
CH46_1686	PF01522	Polysaccharide deacetylase
CH46_1687	PF02261	Aspartate decarboxylase
CH46_1688	PF02569	Pantoate-beta-alanine ligase
CH46_1689	PF02548	Ketopantoate hydroxymethyltransferase
CH46_169	PF00691	OmpA family
CH46_169	PF13677	CH46_169
CH46_1690	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
CH46_1691	PF01743	Poly A polymerase head domain
CH46_1691	PF12626	Polymerase A arginine-rich C-terminus
CH46_1691	PF12627	Probable RNA and SrmB- binding site of polymerase A
CH46_1692	PF00749	tRNA synthetases class I (E and Q), catalytic domain
CH46_1693	PF01258	Prokaryotic dksA/traR C4-type zinc finger
CH46_1694	PF03749	Sugar fermentation stimulation protein
CH46_1695	PF02834	LigT like Phosphoesterase
CH46_1696	PF00270	DEAD/DEAH box helicase
CH46_1696	PF00271	Helicase conserved C-terminal domain
CH46_1696	PF04408	Helicase associated domain (HA2)
CH46_1696	PF08482	CH46_1696
CH46_1697	PF00905	Penicillin binding protein transpeptidase domain
CH46_1697	PF00912	Transglycosylase
CH46_1697	PF14812	CH46_1697
CH46_1697	PF14814	Bifunctional transglycosylase second domain
CH46_1698	PF00005	ABC transporter
CH46_1699	PF01497	Periplasmic binding protein
CH46_170	PF01618	CH46_170
CH46_1700	PF01032	FecCD transport family
CH46_1701	PF00202	Aminotransferase class-III
CH46_1702	PF00654	Voltage gated chloride channel
CH46_1703	PF01521	Iron-sulphur cluster biosynthesis
CH46_1704	PF03458	CH46_1704
CH46_1705	PF01497	Periplasmic binding protein
CH46_1706	PF01048	Phosphorylase superfamily
CH46_1707	PF01966	HD domain
CH46_1707	PF13286	Phosphohydrolase-associated domain
CH46_1708	PF00595	PDZ domain (Also known as DHR or GLGF)
CH46_1708	PF13180	PDZ domain
CH46_1708	PF13365	Trypsin-like peptidase domain
CH46_1709	PF00072	Response regulator receiver domain
CH46_1709	PF00512	His Kinase A (phospho-acceptor) domain
CH46_1709	PF01627	Hpt domain
CH46_1709	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_1709	PF09984	CH46_1709
CH46_171	PF04539	Sigma-70 region 3
CH46_171	PF04542	Sigma-70 region 2
CH46_171	PF04545	Sigma-70, region 4
CH46_1710	PF02824	TGS domain
CH46_1710	PF04607	Region found in RelA / SpoT proteins
CH46_1710	PF13291	ACT domain
CH46_1710	PF13328	HD domain
CH46_1711	PF03819	MazG nucleotide pyrophosphohydrolase domain
CH46_1712	PF00117	Glutamine amidotransferase class-I
CH46_1712	PF06418	CTP synthase N-terminus
CH46_1713	PF00113	Enolase, C-terminal TIM barrel domain
CH46_1713	PF03952	Enolase, N-terminal domain
CH46_1714	PF00080	Copper/zinc superoxide dismutase (SODC)
CH46_1715	PF04055	Radical SAM superfamily
CH46_1715	PF13394	4Fe-4S single cluster domain
CH46_1716	PF01242	6-pyruvoyl tetrahydropterin synthase
CH46_1717	PF00175	Oxidoreductase NAD-binding domain
CH46_1717	PF00258	Flavodoxin
CH46_1717	PF00667	FAD binding domain
CH46_1718	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
CH46_1718	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
CH46_1719	PF01507	Phosphoadenosine phosphosulfate reductase family
CH46_172	PF03748	CH46_172
CH46_1720	PF01695	IstB-like ATP binding protein
CH46_1723	PF00665	Integrase core domain
CH46_1723	PF02796	Helix-turn-helix domain of resolvase
CH46_1724	PF01507	Phosphoadenosine phosphosulfate reductase family
CH46_1725	PF15919	CH46_1725
CH46_1726	PF07927	YcfA-like protein
CH46_1728	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
CH46_1728	PF10414	Sirohaem synthase dimerisation region
CH46_1728	PF13241	Putative NAD(P)-binding
CH46_1728	PF14824	Sirohaem biosynthesis protein central
CH46_1729	PF01507	Phosphoadenosine phosphosulfate reductase family
CH46_173	PF02120	Flagellar hook-length control protein FliK
CH46_1730	PF00009	Elongation factor Tu GTP binding domain
CH46_1731	PF01583	Adenylylsulphate kinase
CH46_1732	PF12084	CH46_1732
CH46_1733	PF04977	Septum formation initiator
CH46_1734	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
CH46_1735	PF02542	YgbB family
CH46_1736	PF01142	tRNA pseudouridine synthase D (TruD)
CH46_1737	PF01975	Survival protein SurE
CH46_1738	PF01135	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
CH46_1739	PF01476	LysM domain
CH46_1739	PF01551	Peptidase family M23
CH46_1740	PF00140	Sigma-70 factor, region 1
CH46_1740	PF04539	Sigma-70 region 3
CH46_1740	PF04542	Sigma-70 region 2
CH46_1740	PF04545	Sigma-70, region 4
CH46_1741	PF00488	MutS domain V
CH46_1741	PF01624	MutS domain I
CH46_1741	PF05188	MutS domain II
CH46_1741	PF05190	MutS family domain IV
CH46_1741	PF05192	MutS domain III
CH46_1742	PF02502	Ribose/Galactose Isomerase
CH46_1743	PF00107	Zinc-binding dehydrogenase
CH46_1743	PF08240	Alcohol dehydrogenase GroES-like domain
CH46_1744	PF13561	Enoyl-(Acyl carrier protein) reductase
CH46_1745	PF02733	Dak1 domain
CH46_1746	PF02734	DAK2 domain
CH46_1747	PF04198	Putative sugar-binding domain
CH46_1747	PF13518	Helix-turn-helix domain
CH46_1748	PF02040	CH46_1748
CH46_1749	PF01022	Bacterial regulatory protein, arsR family
CH46_175	PF02561	Flagellar protein FliS
CH46_1750	PF04703	FaeA-like protein
CH46_1752	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH46_1753	PF00034	Cytochrome c
CH46_1753	PF03150	Di-haem cytochrome c peroxidase
CH46_1753	PF14376	CH46_1753
CH46_1755	PF00593	TonB dependent receptor
CH46_1755	PF07715	TonB-dependent Receptor Plug Domain
CH46_1756	PF00593	TonB dependent receptor
CH46_1757	PF07906	CH46_1757
CH46_1758	PF00557	Metallopeptidase family M24
CH46_1759	PF11903	CH46_1759
CH46_176	PF02465	CH46_176
CH46_176	PF07195	CH46_176
CH46_176	PF07196	Flagellin hook IN motif
CH46_1760	PF05681	CH46_1760
CH46_1760	PF05683	Fumarase C-terminus
CH46_1761	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
CH46_1761	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
CH46_1762	PF01261	Xylose isomerase-like TIM barrel
CH46_1763	PF02653	CH46_1763
CH46_1764	PF02653	CH46_1764
CH46_1765	PF00005	ABC transporter
CH46_1766	PF01797	Transposase IS200 like
CH46_1767	PF13407	Periplasmic binding protein domain
CH46_1768	PF00455	CH46_1768
CH46_1768	PF08220	DeoR-like helix-turn-helix domain
CH46_1769	PF00596	Class II Aldolase and Adducin N-terminal domain
CH46_177	PF00669	Bacterial flagellin N-terminal helical region
CH46_177	PF00700	Bacterial flagellin C-terminal helical region
CH46_1770	PF00384	Molybdopterin oxidoreductase
CH46_1770	PF01568	Molydopterin dinucleotide binding domain
CH46_1770	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
CH46_1771	PF12800	4Fe-4S binding domain
CH46_1771	PF13247	4Fe-4S dicluster domain
CH46_1772	PF04976	CH46_1772
CH46_1773	PF02613	Nitrate reductase delta subunit
CH46_1774	PF01292	Prokaryotic cytochrome b561
CH46_1775	PF07361	Cytochrome b562
CH46_1776	PF00141	Peroxidase
CH46_1777	PF13407	Periplasmic binding protein domain
CH46_1778	PF10054	Predicted periplasmic lipoprotein (DUF2291)
CH46_1779	PF00005	ABC transporter
CH46_178	PF00669	Bacterial flagellin N-terminal helical region
CH46_178	PF00700	Bacterial flagellin C-terminal helical region
CH46_1780	PF02653	CH46_1780
CH46_1781	PF00456	Transketolase, thiamine diphosphate binding domain
CH46_1782	PF02779	Transketolase, pyrimidine binding domain
CH46_1782	PF02780	Transketolase, C-terminal domain
CH46_1783	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
CH46_1783	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
CH46_1784	PF02952	L-fucose isomerase, C-terminal domain
CH46_1785	PF01047	MarR family
CH46_1785	PF04198	Putative sugar-binding domain
CH46_1786	PF07690	Major Facilitator Superfamily
CH46_1787	PF02464	Competence-damaged protein
CH46_1788	PF00154	recA bacterial DNA recombination protein
CH46_1789	PF02631	RecX family
CH46_179	PF00669	Bacterial flagellin N-terminal helical region
CH46_179	PF00700	Bacterial flagellin C-terminal helical region
CH46_1790	PF01411	tRNA synthetases class II (A)
CH46_1790	PF02272	DHHA1 domain
CH46_1790	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
CH46_1791	PF02599	Global regulator protein family
CH46_1796	PF13419	Haloacid dehalogenase-like hydrolase
CH46_1798	PF04262	Glutamate-cysteine ligase
CH46_1799	PF02664	S-Ribosylhomocysteinase (LuxS)
CH46_18	PF03006	CH46_18
CH46_180	PF00486	Transcriptional regulatory protein, C terminal
CH46_1800	PF01797	Transposase IS200 like
CH46_1801	PF00571	CBS domain
CH46_1801	PF01595	CH46_1801
CH46_1801	PF03471	Transporter associated domain
CH46_1802	PF01578	CH46_1802
CH46_1803	PF00448	SRP54-type protein, GTPase domain
CH46_1803	PF02881	SRP54-type protein, helical bundle domain
CH46_1803	PF02978	Signal peptide binding domain
CH46_1804	PF00886	Ribosomal protein S16
CH46_1805	PF01782	RimM N-terminal domain
CH46_1805	PF05239	PRC-barrel domain
CH46_1806	PF01746	tRNA (Guanine-1)-methyltransferase
CH46_1807	PF01245	Ribosomal protein L19
CH46_1808	PF01797	Transposase IS200 like
CH46_1809	PF04338	Protein of unknown function, DUF481
CH46_1810	PF03605	CH46_1810
CH46_1811	PF03605	CH46_1811
CH46_1812	PF03605	CH46_1812
CH46_1813	PF00072	Response regulator receiver domain
CH46_1813	PF04397	LytTr DNA-binding domain
CH46_1814	PF00793	DAHP synthetase I family
CH46_1815	PF01817	Chorismate mutase type II
CH46_1815	PF02153	Prephenate dehydrogenase
CH46_1817	PF01695	IstB-like ATP binding protein
CH46_1818	PF01695	IstB-like ATP binding protein
CH46_1819	PF00665	Integrase core domain
CH46_1819	PF02796	Helix-turn-helix domain of resolvase
CH46_1820	PF00800	Prephenate dehydratase
CH46_1820	PF01817	Chorismate mutase type II
CH46_1821	PF01797	Transposase IS200 like
CH46_1822	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
CH46_1823	PF13525	Outer membrane lipoprotein
CH46_1824	PF00849	RNA pseudouridylate synthase
CH46_1824	PF01479	S4 domain
CH46_1825	PF02578	Multi-copper polyphenol oxidoreductase laccase
CH46_1826	PF00004	ATPase family associated with various cellular activities (AAA)
CH46_1826	PF02861	Clp amino terminal domain
CH46_1826	PF07724	AAA domain (Cdc48 subfamily)
CH46_1826	PF10431	C-terminal, D2-small domain, of ClpB protein
CH46_183	PF00669	Bacterial flagellin N-terminal helical region
CH46_1833	PF10043	CH46_1833
CH46_1834	PF13091	PLD-like domain
CH46_1835	PF00583	Acetyltransferase (GNAT) family
CH46_1835	PF13380	CoA binding domain
CH46_1835	PF13549	ATP-grasp domain
CH46_1835	PF13607	Succinyl-CoA ligase like flavodoxin domain
CH46_1836	PF03942	CH46_1836
CH46_1837	PF00085	Thioredoxin
CH46_1838	PF00588	SpoU rRNA Methylase family
CH46_1838	PF08032	RNA 2'-O ribose methyltransferase substrate binding
CH46_1839	PF07690	Major Facilitator Superfamily
CH46_184	PF00460	Flagella basal body rod protein
CH46_184	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH46_1840	PF00529	HlyD family secretion protein
CH46_1840	PF16576	CH46_1840
CH46_1841	PF01047	MarR family
CH46_1842	PF05437	CH46_1842
CH46_1843	PF03591	CH46_1843
CH46_1844	PF07690	Major Facilitator Superfamily
CH46_1845	PF11533	Protein of unknown function (DUF3225)
CH46_1846	PF01425	Amidase
CH46_1847	PF13318	CH46_1847
CH46_1848	PF01380	SIS domain
CH46_1848	PF01418	Helix-turn-helix domain, rpiR family
CH46_1849	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH46_185	PF10135	CH46_185
CH46_1850	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_1851	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_1852	PF00005	ABC transporter
CH46_1853	PF00266	Aminotransferase class-V
CH46_1854	PF01695	IstB-like ATP binding protein
CH46_1858	PF01546	Peptidase family M20/M25/M40
CH46_1859	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
CH46_1859	PF08479	POTRA domain, ShlB-type
CH46_186	PF02119	CH46_186
CH46_1860	PF05860	haemagglutination activity domain
CH46_1860	PF13018	CH46_1860
CH46_1862	PF03333	Adhesin biosynthesis transcription regulatory protein
CH46_1863	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
CH46_1863	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
CH46_1863	PF09317	CH46_1863
CH46_1864	PF13580	SIS domain
CH46_1865	PF03734	L,D-transpeptidase catalytic domain
CH46_1866	PF13230	Glutamine amidotransferases class-II
CH46_1867	PF05896	CH46_1867
CH46_1867	PF11973	CH46_1867
CH46_1868	PF03116	CH46_1868
CH46_1869	PF04205	FMN-binding domain
CH46_187	PF02107	CH46_187
CH46_1870	PF02508	CH46_1870
CH46_1871	PF02508	CH46_1871
CH46_1872	PF00111	2Fe-2S iron-sulfur cluster binding domain
CH46_1872	PF00175	Oxidoreductase NAD-binding domain
CH46_1872	PF00970	Oxidoreductase FAD-binding domain
CH46_1873	PF02424	ApbE family
CH46_1874	PF04400	CH46_1874
CH46_1875	PF03009	Glycerophosphoryl diester phosphodiesterase family
CH46_1876	PF00817	impB/mucB/samB family
CH46_1876	PF11798	IMS family HHH motif
CH46_1876	PF11799	impB/mucB/samB family C-terminal domain
CH46_1877	PF01546	Peptidase family M20/M25/M40
CH46_1877	PF07687	Peptidase dimerisation domain
CH46_1879	PF03067	Chitin binding domain
CH46_188	PF00460	Flagella basal body rod protein
CH46_188	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH46_1880	PF16083	CH46_1880
CH46_1881	PF00156	Phosphoribosyl transferase domain
CH46_1882	PF06500	Alpha/beta hydrolase of unknown function (DUF1100)
CH46_1883	PF07417	Transcriptional regulator Crl
CH46_1884	PF00696	Amino acid kinase family
CH46_1884	PF01472	PUA domain
CH46_1885	PF00171	Aldehyde dehydrogenase family
CH46_1886	PF07238	PilZ domain
CH46_1886	PF07317	Flagellar regulator YcgR
CH46_1888	PF08241	Methyltransferase domain
CH46_1889	PF00398	Ribosomal RNA adenine dimethylase
CH46_189	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH46_1890	PF01202	Shikimate kinase
CH46_1891	PF06865	Protein of unknown function (DUF1255)
CH46_1892	PF04381	Putative exonuclease, RdgC
CH46_1893	PF00480	ROK family
CH46_1894	PF00665	Integrase core domain
CH46_1894	PF02796	Helix-turn-helix domain of resolvase
CH46_1895	PF01695	IstB-like ATP binding protein
CH46_1896	PF13476	AAA domain
CH46_1896	PF13558	Putative exonuclease SbcCD, C subunit
CH46_1897	PF00149	Calcineurin-like phosphoesterase
CH46_1897	PF12320	Type 5 capsule protein repressor C-terminal domain
CH46_1898	PF00072	Response regulator receiver domain
CH46_1898	PF00486	Transcriptional regulatory protein, C terminal
CH46_1899	PF00512	His Kinase A (phospho-acceptor) domain
CH46_1899	PF00989	PAS fold
CH46_1899	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_1899	PF11808	CH46_1899
CH46_19	PF09933	CH46_19
CH46_190	PF01797	Transposase IS200 like
CH46_1900	PF12849	PBP superfamily domain
CH46_1901	PF05525	CH46_1901
CH46_1902	PF00324	Amino acid permease
CH46_1903	PF00128	Alpha amylase, catalytic domain
CH46_1903	PF02903	Alpha amylase, N-terminal ig-like domain
CH46_1904	PF00106	short chain dehydrogenase
CH46_1905	PF01019	Gamma-glutamyltranspeptidase
CH46_1906	PF01019	Gamma-glutamyltranspeptidase
CH46_1907	PF01797	Transposase IS200 like
CH46_1908	PF00578	AhpC/TSA family
CH46_1908	PF10417	C-terminal domain of 1-Cys peroxiredoxin
CH46_1909	PF04336	CH46_1909
CH46_191	PF00460	Flagella basal body rod protein
CH46_1910	PF02547	Queuosine biosynthesis protein
CH46_1911	PF01702	Queuine tRNA-ribosyltransferase
CH46_1912	PF02699	Preprotein translocase subunit
CH46_1913	PF02355	Protein export membrane protein
CH46_1913	PF07549	SecD/SecF GG Motif
CH46_1913	PF13721	SecD export protein N-terminal TM region
CH46_1914	PF02355	Protein export membrane protein
CH46_1914	PF07549	SecD/SecF GG Motif
CH46_1917	PF03477	ATP cone domain
CH46_1918	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
CH46_1918	PF01872	RibD C-terminal domain
CH46_1919	PF00885	6,7-dimethyl-8-ribityllumazine synthase
CH46_192	PF00460	Flagella basal body rod protein
CH46_192	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH46_192	PF07559	Flagellar basal body protein FlaE
CH46_1920	PF01029	NusB family
CH46_1921	PF00586	AIR synthase related protein, N-terminal domain
CH46_1921	PF02769	AIR synthase related protein, C-terminal domain
CH46_1922	PF04608	Phosphatidylglycerophosphatase A
CH46_1923	PF01797	Transposase IS200 like
CH46_1924	PF02779	Transketolase, pyrimidine binding domain
CH46_1924	PF02780	Transketolase, C-terminal domain
CH46_1924	PF13292	1-deoxy-D-xylulose-5-phosphate synthase
CH46_1925	PF00348	Polyprenyl synthetase
CH46_1926	PF02609	Exonuclease VII small subunit
CH46_1927	PF02568	Thiamine biosynthesis protein (ThiI)
CH46_1927	PF02926	THUMP domain
CH46_1928	PF01965	DJ-1/PfpI family
CH46_1929	PF02558	Ketopantoate reductase PanE/ApbA
CH46_1929	PF08546	Ketopantoate reductase PanE/ApbA C terminal
CH46_193	PF03963	CH46_193
CH46_193	PF13860	FlgD Ig-like domain
CH46_193	PF13861	FlgD Tudor-like domain
CH46_1930	PF04461	Protein of unknown function (DUF520)
CH46_1931	PF07690	Major Facilitator Superfamily
CH46_1932	PF01040	UbiA prenyltransferase family
CH46_1933	PF03626	CH46_1933
CH46_1934	PF00510	Cytochrome c oxidase subunit III
CH46_1935	PF00115	Cytochrome C and Quinol oxidase polypeptide I
CH46_1936	PF06481	COX Aromatic Rich Motif
CH46_1937	PF03502	Nucleoside-specific channel-forming protein, Tsx
CH46_1938	PF07690	Major Facilitator Superfamily
CH46_1939	PF03923	CH46_1939
CH46_1939	PF08139	CH46_1939
CH46_194	PF00460	Flagella basal body rod protein
CH46_194	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH46_1940	PF01722	BolA-like protein
CH46_1942	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
CH46_1942	PF05697	Bacterial trigger factor protein (TF)
CH46_1942	PF05698	Bacterial trigger factor protein (TF) C-terminus
CH46_1943	PF00574	Clp protease
CH46_1944	PF06689	ClpX C4-type zinc finger
CH46_1944	PF07724	AAA domain (Cdc48 subfamily)
CH46_1944	PF10431	C-terminal, D2-small domain, of ClpB protein
CH46_1945	PF00004	ATPase family associated with various cellular activities (AAA)
CH46_1945	PF02190	ATP-dependent protease La (LON) domain
CH46_1945	PF05362	Lon protease (S16) C-terminal proteolytic domain
CH46_1946	PF00216	Bacterial DNA-binding protein
CH46_1947	PF13145	PPIC-type PPIASE domain
CH46_1947	PF13624	SurA N-terminal domain
CH46_1948	PF12836	Helix-hairpin-helix motif
CH46_1949	PF13279	Thioesterase-like superfamily
CH46_195	PF00460	Flagella basal body rod protein
CH46_1950	PF06508	Queuosine biosynthesis protein QueC
CH46_1951	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH46_1951	PF12793	CH46_1951
CH46_1952	PF08282	haloacid dehalogenase-like hydrolase
CH46_1953	PF00291	Pyridoxal-phosphate dependent enzyme
CH46_1954	PF01037	AsnC family
CH46_1954	PF13412	Winged helix-turn-helix DNA-binding
CH46_1955	PF00005	ABC transporter
CH46_1955	PF00664	ABC transporter transmembrane region
CH46_1956	PF00005	ABC transporter
CH46_1956	PF00664	ABC transporter transmembrane region
CH46_1957	PF00543	Nitrogen regulatory protein P-II
CH46_1958	PF00909	Ammonium Transporter Family
CH46_1959	PF13622	Thioesterase-like superfamily
CH46_196	PF13144	SAF-like
CH46_1960	PF09619	Type III secretion system lipoprotein chaperone (YscW)
CH46_1961	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
CH46_1962	PF05321	Haemolysin expression modulating protein
CH46_1963	PF10757	CH46_1963
CH46_1965	PF00444	Ribosomal protein L36
CH46_1966	PF01197	Ribosomal protein L31
CH46_1967	PF00873	AcrB/AcrD/AcrF family
CH46_1968	PF00529	HlyD family secretion protein
CH46_1968	PF16576	CH46_1968
CH46_1969	PF00440	Bacterial regulatory proteins, tetR family
CH46_1969	PF08361	MAATS-type transcriptional repressor, C-terminal region
CH46_197	PF04316	Anti-sigma-28 factor, FlgM
CH46_1970	PF02635	DsrE/DsrF-like family
CH46_1971	PF00924	Mechanosensitive ion channel
CH46_1971	PF12794	CH46_1971
CH46_1971	PF12795	CH46_1971
CH46_1972	PF07445	Primosomal replication protein priB and priC
CH46_1973	PF04304	CH46_1973
CH46_1974	PF00665	Integrase core domain
CH46_1974	PF02796	Helix-turn-helix domain of resolvase
CH46_1975	PF01695	IstB-like ATP binding protein
CH46_1976	PF00156	Phosphoribosyl transferase domain
CH46_1977	PF12168	CH46_1977
CH46_1977	PF12169	DNA polymerase III subunits gamma and tau domain III
CH46_1977	PF12170	DNA polymerase III tau subunit V interacting with alpha
CH46_1977	PF13177	DNA polymerase III, delta subunit
CH46_1978	PF02575	YbaB/EbfC DNA-binding family
CH46_1979	PF02132	RecR protein
CH46_1979	PF13662	Toprim domain
CH46_198	PF05130	FlgN protein
CH46_1980	PF00183	Hsp90 protein
CH46_1980	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_1981	PF00406	Adenylate kinase
CH46_1981	PF05191	Adenylate kinase, active site lid
CH46_1982	PF00762	Ferrochelatase
CH46_1983	PF00111	2Fe-2S iron-sulfur cluster binding domain
CH46_1983	PF00175	Oxidoreductase NAD-binding domain
CH46_1983	PF00970	Oxidoreductase FAD-binding domain
CH46_1984	PF00483	Nucleotidyl transferase
CH46_1985	PF16363	CH46_1985
CH46_1986	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
CH46_1987	PF01370	NAD dependent epimerase/dehydratase family
CH46_1988	PF13450	NAD(P)-binding Rossmann-like domain
CH46_199	PF02050	Flagellar FliJ protein
CH46_1990	PF00535	Glycosyl transferase family 2
CH46_1992	PF13692	Glycosyl transferases group 1
CH46_1995	PF00534	Glycosyl transferases group 1
CH46_1995	PF13439	Glycosyltransferase Family 4
CH46_1996	PF16363	CH46_1996
CH46_1997	PF16363	CH46_1997
CH46_2	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_2	PF03466	LysR substrate binding domain
CH46_20	PF01571	Aminomethyltransferase folate-binding domain
CH46_200	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CH46_2000	PF00483	Nucleotidyl transferase
CH46_2000	PF01050	Mannose-6-phosphate isomerase
CH46_2001	PF00535	Glycosyl transferase family 2
CH46_2002	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
CH46_2002	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
CH46_2002	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
CH46_2002	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
CH46_2003	PF02706	Chain length determinant protein
CH46_2004	PF00294	pfkB family carbohydrate kinase
CH46_2005	PF00999	Sodium/hydrogen exchanger family
CH46_2005	PF02254	TrkA-N domain
CH46_2006	PF07690	Major Facilitator Superfamily
CH46_2008	PF00149	Calcineurin-like phosphoesterase
CH46_2009	PF02872	5'-nucleotidase, C-terminal domain
CH46_201	PF02108	CH46_201
CH46_201	PF09811	CH46_201
CH46_2012	PF04073	Aminoacyl-tRNA editing domain
CH46_2013	PF01963	CH46_2013
CH46_2014	PF00122	E1-E2 ATPase
CH46_2014	PF00403	Heavy-metal-associated domain
CH46_2014	PF00702	haloacid dehalogenase-like hydrolase
CH46_2015	PF13411	MerR HTH family regulatory protein
CH46_2016	PF01957	NfeD-like C-terminal, partner-binding
CH46_2017	PF01145	SPFH domain / Band 7 family
CH46_2018	PF00085	Thioredoxin
CH46_2018	PF14559	Tetratricopeptide repeat
CH46_2018	PF14561	Tetratricopeptide repeat
CH46_2019	PF00106	short chain dehydrogenase
CH46_202	PF01706	FliG C-terminal domain
CH46_202	PF14841	FliG middle domain
CH46_202	PF14842	FliG N-terminal domain
CH46_2020	PF13472	GDSL-like Lipase/Acylhydrolase family
CH46_2021	PF00005	ABC transporter
CH46_2022	PF02687	CH46_2022
CH46_2023	PF02222	ATP-grasp domain
CH46_2024	PF00731	AIR carboxylase
CH46_2025	PF00149	Calcineurin-like phosphoesterase
CH46_2026	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
CH46_2027	PF01406	tRNA synthetases class I (C) catalytic domain
CH46_2027	PF09190	DALR domain
CH46_2029	PF01797	Transposase IS200 like
CH46_203	PF01514	Secretory protein of YscJ/FliF family
CH46_203	PF08345	CH46_203
CH46_2030	PF00308	Bacterial dnaA  protein
CH46_2031	PF03960	ArsC family
CH46_2032	PF01435	Peptidase family M48
CH46_2032	PF07720	Tetratricopeptide repeat
CH46_2032	PF14559	Tetratricopeptide repeat
CH46_2033	PF01594	CH46_2033
CH46_2036	PF00578	AhpC/TSA family
CH46_2037	PF13740	ACT domain
CH46_2038	PF00701	Dihydrodipicolinate synthetase family
CH46_2039	PF06804	NlpB/DapX lipoprotein
CH46_204	PF02049	CH46_204
CH46_2040	PF01797	Transposase IS200 like
CH46_2041	PF01259	SAICAR synthetase
CH46_2042	PF04228	CH46_2042
CH46_2043	PF04284	CH46_2043
CH46_2044	PF05127	Helicase
CH46_2044	PF08351	Domain of unknown function (DUF1726)
CH46_2044	PF13718	GNAT acetyltransferase 2
CH46_2044	PF17176	CH46_2044
CH46_2045	PF13980	CH46_2045
CH46_2046	PF02557	D-alanyl-D-alanine carboxypeptidase
CH46_2047	PF01546	Peptidase family M20/M25/M40
CH46_2047	PF07687	Peptidase dimerisation domain
CH46_2048	PF03960	ArsC family
CH46_2049	PF12688	Tetratrico peptide repeat
CH46_205	PF00158	Sigma-54 interaction domain
CH46_205	PF02954	Bacterial regulatory protein, Fis family
CH46_2050	PF13416	Bacterial extracellular solute-binding protein
CH46_2051	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_2052	PF00005	ABC transporter
CH46_2053	PF00884	Sulfatase
CH46_2054	PF04055	Radical SAM superfamily
CH46_2054	PF13353	4Fe-4S single cluster domain
CH46_2055	PF04307	CH46_2055
CH46_2057	PF00873	AcrB/AcrD/AcrF family
CH46_2058	PF09904	Winged helix-turn helix
CH46_2059	PF00072	Response regulator receiver domain
CH46_2059	PF00196	Bacterial regulatory proteins, luxR family
CH46_206	PF01052	Surface presentation of antigens (SPOA)
CH46_2060	PF12838	4Fe-4S dicluster domain
CH46_2060	PF13187	4Fe-4S dicluster domain
CH46_2061	PF03927	NapD protein
CH46_2062	PF00384	Molybdopterin oxidoreductase
CH46_2062	PF01568	Molydopterin dinucleotide binding domain
CH46_2062	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
CH46_2062	PF10518	TAT (twin-arginine translocation) pathway signal sequence
CH46_2063	PF03892	Nitrate reductase cytochrome c-type subunit (NapB)
CH46_2064	PF03264	NapC/NirT cytochrome c family, N-terminal region
CH46_2065	PF00293	NUDIX domain
CH46_2066	PF00390	Malic enzyme, N-terminal domain
CH46_2066	PF01515	Phosphate acetyl/butaryl transferase
CH46_2066	PF03949	Malic enzyme, NAD binding domain
CH46_2067	PF02639	CH46_2067
CH46_2068	PF01218	Coproporphyrinogen III oxidase
CH46_2069	PF00583	Acetyltransferase (GNAT) family
CH46_207	PF01052	Surface presentation of antigens (SPOA)
CH46_2072	PF03212	Pertactin
CH46_2072	PF03797	Autotransporter beta-domain
CH46_2073	PF04076	Bacterial OB fold (BOF) protein
CH46_2074	PF06572	Protein of unknown function (DUF1131)
CH46_2075	PF04261	Dyp-type peroxidase family
CH46_2076	PF00701	Dihydrodipicolinate synthetase family
CH46_2077	PF04131	Putative N-acetylmannosamine-6-phosphate epimerase
CH46_2078	PF12468	Type III secretion system leucine rich repeat protein
CH46_2078	PF13855	Leucine rich repeat
CH46_2079	PF00480	ROK family
CH46_208	PF00813	CH46_208
CH46_2080	PF04074	Domain of unknown function (DUF386)
CH46_2081	PF01380	SIS domain
CH46_2081	PF01418	Helix-turn-helix domain, rpiR family
CH46_2082	PF07690	Major Facilitator Superfamily
CH46_2083	PF13531	Bacterial extracellular solute-binding protein
CH46_2084	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_2085	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_2086	PF00005	ABC transporter
CH46_2087	PF00291	Pyridoxal-phosphate dependent enzyme
CH46_2089	PF00072	Response regulator receiver domain
CH46_2089	PF00486	Transcriptional regulatory protein, C terminal
CH46_209	PF01313	CH46_209
CH46_2090	PF00512	His Kinase A (phospho-acceptor) domain
CH46_2090	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_2091	PF00092	von Willebrand factor type A domain
CH46_2092	PF00155	Aminotransferase class I and II
CH46_2093	PF01321	Creatinase/Prolidase N-terminal domain
CH46_2094	PF00557	Metallopeptidase family M24
CH46_2094	PF01321	Creatinase/Prolidase N-terminal domain
CH46_2095	PF11755	CH46_2095
CH46_2097	PF00581	Rhodanese-like domain
CH46_2097	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
CH46_2097	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH46_2098	PF00005	ABC transporter
CH46_2098	PF02687	CH46_2098
CH46_2098	PF12704	MacB-like periplasmic core domain
CH46_2099	PF16576	CH46_2099
CH46_21	PF03937	Flavinator of succinate dehydrogenase
CH46_210	PF01311	CH46_210
CH46_2102	PF00512	His Kinase A (phospho-acceptor) domain
CH46_2102	PF00672	HAMP domain
CH46_2102	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_2103	PF01695	IstB-like ATP binding protein
CH46_2104	PF00665	Integrase core domain
CH46_2104	PF02796	Helix-turn-helix domain of resolvase
CH46_2106	PF01797	Transposase IS200 like
CH46_2107	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
CH46_2108	PF00391	PEP-utilising enzyme, mobile domain
CH46_2108	PF02896	PEP-utilising enzyme, TIM barrel domain
CH46_2108	PF05524	PEP-utilising enzyme, N-terminal
CH46_2109	PF00381	PTS HPr component phosphorylation site
CH46_211	PF01312	FlhB HrpN YscU SpaS Family
CH46_2110	PF00291	Pyridoxal-phosphate dependent enzyme
CH46_2111	PF07264	Etoposide-induced protein 2
CH46_2112	PF04354	ZipA, C-terminal FtsZ-binding domain
CH46_2113	PF00533	BRCA1 C Terminus (BRCT) domain
CH46_2113	PF01653	NAD-dependent DNA ligase adenylation domain
CH46_2113	PF03119	NAD-dependent DNA ligase C4 zinc finger domain
CH46_2113	PF03120	NAD-dependent DNA ligase OB-fold domain
CH46_2113	PF12826	Helix-hairpin-helix motif
CH46_2113	PF14520	Helix-hairpin-helix domain
CH46_2114	PF12843	CH46_2114
CH46_2115	PF14282	CH46_2115
CH46_2116	PF06042	Bacterial protein of unknown function (DUF925)
CH46_2119	PF01797	Transposase IS200 like
CH46_212	PF00771	FHIPEP family
CH46_2120	PF00749	tRNA synthetases class I (E and Q), catalytic domain
CH46_2124	PF01773	Na+ dependent nucleoside transporter N-terminus
CH46_2124	PF07662	Na+ dependent nucleoside transporter C-terminus
CH46_2124	PF07670	Nucleoside recognition
CH46_2125	PF01566	CH46_2125
CH46_2126	PF10697	CH46_2126
CH46_2127	PF00248	Aldo/keto reductase family
CH46_2128	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_2128	PF03466	LysR substrate binding domain
CH46_2129	PF05232	CH46_2129
CH46_213	PF00771	FHIPEP family
CH46_2130	PF02685	Glucokinase
CH46_2131	PF07350	Protein of unknown function (DUF1479)
CH46_2132	PF00155	Aminotransferase class I and II
CH46_2133	PF01292	Prokaryotic cytochrome b561
CH46_2134	PF15970	CH46_2134
CH46_2135	PF03783	Curli production assembly/transport component CsgG
CH46_2136	PF16068	CH46_2136
CH46_2137	PF05643	Putative bacterial lipoprotein (DUF799)
CH46_2138	PF00037	4Fe-4S binding domain
CH46_2138	PF12838	4Fe-4S dicluster domain
CH46_2139	PF02613	Nitrate reductase delta subunit
CH46_214	PF11153	CH46_214
CH46_2140	PF04976	CH46_2140
CH46_2141	PF12800	4Fe-4S binding domain
CH46_2141	PF13247	4Fe-4S dicluster domain
CH46_2142	PF00384	Molybdopterin oxidoreductase
CH46_2142	PF01568	Molydopterin dinucleotide binding domain
CH46_2142	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
CH46_2143	PF13988	CH46_2143
CH46_2144	PF05638	Protein of unknown function (DUF796)
CH46_2145	PF09900	CH46_2145
CH46_2146	PF00005	ABC transporter
CH46_2147	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_2148	PF13343	Bacterial extracellular solute-binding protein
CH46_2149	PF13406	Transglycosylase SLT domain
CH46_2150	PF00196	Bacterial regulatory proteins, luxR family
CH46_2151	PF08786	Domain of unknown function (DUF1795)
CH46_2152	PF00691	OmpA family
CH46_2154	PF11397	CH46_2154
CH46_2155	PF00419	Fimbrial protein
CH46_2156	PF06812	CH46_2156
CH46_2157	PF06996	CH46_2157
CH46_2158	PF05947	CH46_2158
CH46_2159	PF00004	ATPase family associated with various cellular activities (AAA)
CH46_2159	PF02861	Clp amino terminal domain
CH46_2159	PF07724	AAA domain (Cdc48 subfamily)
CH46_2159	PF10431	C-terminal, D2-small domain, of ClpB protein
CH46_216	PF01497	Periplasmic binding protein
CH46_2160	PF16970	CH46_2160
CH46_2161	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH46_2161	PF02753	Pili assembly chaperone PapD, C-terminal domain
CH46_2162	PF00577	Outer membrane usher protein
CH46_2162	PF13954	PapC N-terminal domain
CH46_2163	PF00872	CH46_2163
CH46_2164	PF00577	Outer membrane usher protein
CH46_2164	PF13953	PapC C-terminal domain
CH46_2165	PF00419	Fimbrial protein
CH46_2166	PF05591	CH46_2166
CH46_2167	PF05943	CH46_2167
CH46_2168	PF05638	Protein of unknown function (DUF796)
CH46_2169	PF12790	Type VI secretion lipoprotein
CH46_217	PF00419	Fimbrial protein
CH46_2170	PF05936	CH46_2170
CH46_2171	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
CH46_2172	PF00665	Integrase core domain
CH46_2172	PF02796	Helix-turn-helix domain of resolvase
CH46_2173	PF01695	IstB-like ATP binding protein
CH46_2174	PF03740	Pyridoxal phosphate biosynthesis protein PdxJ
CH46_2175	PF01648	4'-phosphopantetheinyl transferase superfamily
CH46_2176	PF01797	Transposase IS200 like
CH46_2177	PF12838	4Fe-4S dicluster domain
CH46_2178	PF01380	SIS domain
CH46_2178	PF01418	Helix-turn-helix domain, rpiR family
CH46_2179	PF01380	SIS domain
CH46_218	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH46_218	PF02753	Pili assembly chaperone PapD, C-terminal domain
CH46_2180	PF12710	haloacid dehalogenase-like hydrolase
CH46_2181	PF14437	CH46_2181
CH46_2182	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH46_2182	PF01464	Transglycosylase SLT domain
CH46_2183	PF02769	AIR synthase related protein, C-terminal domain
CH46_2183	PF13507	CobB/CobQ-like glutamine amidotransferase domain
CH46_2187	PF01797	Transposase IS200 like
CH46_2188	PF00512	His Kinase A (phospho-acceptor) domain
CH46_2188	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_2189	PF13942	CH46_2189
CH46_219	PF00577	Outer membrane usher protein
CH46_219	PF13953	PapC C-terminal domain
CH46_219	PF13954	PapC N-terminal domain
CH46_2190	PF00072	Response regulator receiver domain
CH46_2190	PF00158	Sigma-54 interaction domain
CH46_2191	PF00795	Carbon-nitrogen hydrolase
CH46_2191	PF02540	NAD synthase
CH46_2192	PF00543	Nitrogen regulatory protein P-II
CH46_2195	PF00042	Globin
CH46_2195	PF00175	Oxidoreductase NAD-binding domain
CH46_2195	PF00970	Oxidoreductase FAD-binding domain
CH46_2196	PF00464	Serine hydroxymethyltransferase
CH46_2197	PF13505	Outer membrane protein beta-barrel domain
CH46_2198	PF00874	PRD domain
CH46_2199	PF12832	MFS_1 like family
CH46_22	PF00072	Response regulator receiver domain
CH46_22	PF00486	Transcriptional regulatory protein, C terminal
CH46_220	PF01797	Transposase IS200 like
CH46_2200	PF06226	CH46_2200
CH46_2201	PF03824	CH46_2201
CH46_2202	PF01797	Transposase IS200 like
CH46_2203	PF00459	Inositol monophosphatase family
CH46_2204	PF00588	SpoU rRNA Methylase family
CH46_2205	PF02082	Transcriptional regulator
CH46_2206	PF00266	Aminotransferase class-V
CH46_2207	PF01592	NifU-like N terminal domain
CH46_2208	PF01521	Iron-sulphur cluster biosynthesis
CH46_2209	PF00226	DnaJ domain
CH46_2209	PF07743	HSCB C-terminal oligomerisation domain
CH46_221	PF01797	Transposase IS200 like
CH46_2210	PF00012	Hsp70 protein
CH46_2211	PF00111	2Fe-2S iron-sulfur cluster binding domain
CH46_2212	PF04384	Iron-sulphur cluster assembly
CH46_2213	PF00883	Cytosol aminopeptidase family, catalytic domain
CH46_2213	PF12404	CH46_2213
CH46_2214	PF07179	CH46_2214
CH46_2214	PF14581	CH46_2214
CH46_2215	PF03797	Autotransporter beta-domain
CH46_2216	PF03212	Pertactin
CH46_2216	PF03797	Autotransporter beta-domain
CH46_2217	PF03212	Pertactin
CH46_2217	PF03797	Autotransporter beta-domain
CH46_2218	PF00030	Beta/Gamma crystallin
CH46_2218	PF08964	Beta/Gamma crystallin
CH46_2218	PF09101	Exotoxin A binding
CH46_2219	PF00334	Nucleoside diphosphate kinase
CH46_222	PF01478	Type IV leader peptidase family
CH46_2220	PF04055	Radical SAM superfamily
CH46_2221	PF13181	Tetratricopeptide repeat
CH46_2221	PF13431	Tetratricopeptide repeat
CH46_2222	PF13413	Helix-turn-helix domain
CH46_2222	PF13464	CH46_2222
CH46_2223	PF04551	GcpE protein
CH46_2224	PF03129	Anticodon binding domain
CH46_2224	PF13393	Histidyl-tRNA synthetase
CH46_2225	PF09976	Tetratricopeptide repeat
CH46_2226	PF13360	PQQ-like domain
CH46_2227	PF01926	50S ribosome-binding GTPase
CH46_2227	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
CH46_2228	PF03547	CH46_2228
CH46_2229	PF07191	zinc-ribbons
CH46_2230	PF02601	CH46_2230
CH46_2230	PF13742	CH46_2230
CH46_2231	PF00478	IMP dehydrogenase / GMP reductase domain
CH46_2231	PF00571	CBS domain
CH46_2232	PF00117	Glutamine amidotransferase class-I
CH46_2232	PF00958	GMP synthase C terminal domain
CH46_2232	PF02540	NAD synthase
CH46_2233	PF01797	Transposase IS200 like
CH46_2234	PF05638	Protein of unknown function (DUF796)
CH46_2236	PF06836	CH46_2236
CH46_2237	PF06836	CH46_2237
CH46_2238	PF06836	CH46_2238
CH46_224	PF13629	CH46_224
CH46_2240	PF00872	CH46_2240
CH46_2241	PF00872	CH46_2241
CH46_2243	PF06092	CH46_2243
CH46_2244	PF08543	Phosphomethylpyrimidine kinase
CH46_2247	PF08816	Inhibitor of vertebrate lysozyme (Ivy)
CH46_2248	PF00781	Diacylglycerol kinase catalytic domain
CH46_2249	PF01136	CH46_2249
CH46_2249	PF16325	CH46_2249
CH46_225	PF00263	CH46_225
CH46_2250	PF07411	Domain of unknown function (DUF1508)
CH46_2251	PF00072	Response regulator receiver domain
CH46_2251	PF00486	Transcriptional regulatory protein, C terminal
CH46_2252	PF00512	His Kinase A (phospho-acceptor) domain
CH46_2252	PF00672	HAMP domain
CH46_2253	PF07690	Major Facilitator Superfamily
CH46_2254	PF00873	AcrB/AcrD/AcrF family
CH46_2255	PF00873	AcrB/AcrD/AcrF family
CH46_2256	PF13437	HlyD family secretion protein
CH46_2256	PF13533	Biotin-lipoyl like
CH46_2257	PF00005	ABC transporter
CH46_2257	PF08402	TOBE domain
CH46_2258	PF00155	Aminotransferase class I and II
CH46_2258	PF00392	Bacterial regulatory proteins, gntR family
CH46_2259	PF00202	Aminotransferase class-III
CH46_2260	PF13416	Bacterial extracellular solute-binding protein
CH46_2261	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_2262	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_2263	PF00012	Hsp70 protein
CH46_2264	PF00571	CBS domain
CH46_2264	PF01769	Divalent cation transporter
CH46_2264	PF03448	MgtE intracellular N domain
CH46_2265	PF02541	Ppx/GppA phosphatase family
CH46_2266	PF02503	Polyphosphate kinase middle domain
CH46_2266	PF13089	Polyphosphate kinase N-terminal domain
CH46_2266	PF13090	Polyphosphate kinase C-terminal domain
CH46_2267	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_2268	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_2269	PF00005	ABC transporter
CH46_2270	PF03692	CH46_2270
CH46_2272	PF13302	Acetyltransferase (GNAT) domain
CH46_2273	PF00551	Formyl transferase
CH46_2274	PF00586	AIR synthase related protein, N-terminal domain
CH46_2274	PF02769	AIR synthase related protein, C-terminal domain
CH46_2275	PF14681	Uracil phosphoribosyltransferase
CH46_2276	PF01797	Transposase IS200 like
CH46_2277	PF13275	S4 domain
CH46_2278	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
CH46_2278	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
CH46_228	PF00437	Type II/IV secretion system protein
CH46_2285	PF01066	CDP-alcohol phosphatidyltransferase
CH46_2286	PF01148	Cytidylyltransferase family
CH46_2287	PF01553	Acyltransferase
CH46_2288	PF12146	Putative lysophospholipase
CH46_2288	PF12147	CH46_2288
CH46_2289	PF00782	Dual specificity phosphatase, catalytic domain
CH46_2289	PF14378	CH46_2289
CH46_229	PF00482	Type II secretion system (T2SS), protein F
CH46_2292	PF01695	IstB-like ATP binding protein
CH46_2297	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_2297	PF03466	LysR substrate binding domain
CH46_2298	PF00248	Aldo/keto reductase family
CH46_2299	PF00248	Aldo/keto reductase family
CH46_23	PF00512	His Kinase A (phospho-acceptor) domain
CH46_23	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_23	PF14827	Sensory domain of two-component sensor kinase
CH46_230	PF00482	Type II secretion system (T2SS), protein F
CH46_2301	PF00933	Glycosyl hydrolase family 3 N terminal domain
CH46_2301	PF01915	Glycosyl hydrolase family 3 C-terminal domain
CH46_2301	PF14310	Fibronectin type III-like domain
CH46_2302	PF14345	CH46_2302
CH46_2303	PF09925	CH46_2303
CH46_2303	PF14351	CH46_2303
CH46_2304	PF00872	CH46_2304
CH46_2305	PF00872	CH46_2305
CH46_2307	PF11459	CH46_2307
CH46_2307	PF17194	CH46_2307
CH46_2308	PF03212	Pertactin
CH46_2308	PF03797	Autotransporter beta-domain
CH46_2311	PF05638	Protein of unknown function (DUF796)
CH46_2312	PF06836	CH46_2312
CH46_2313	PF06836	CH46_2313
CH46_2315	PF13693	Winged helix-turn-helix DNA-binding
CH46_2316	PF00905	Penicillin binding protein transpeptidase domain
CH46_2316	PF06832	CH46_2316
CH46_2317	PF00872	CH46_2317
CH46_2318	PF00872	CH46_2318
CH46_2319	PF03611	CH46_2319
CH46_232	PF07811	CH46_232
CH46_2320	PF00293	NUDIX domain
CH46_2321	PF12850	Calcineurin-like phosphoesterase superfamily domain
CH46_2322	PF00563	EAL domain
CH46_2323	PF01370	NAD dependent epimerase/dehydratase family
CH46_2323	PF08338	Domain of unknown function (DUF1731)
CH46_2324	PF00005	ABC transporter
CH46_2325	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_2326	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_2327	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH46_2328	PF02441	Flavoprotein
CH46_2329	PF00156	Phosphoribosyl transferase domain
CH46_2329	PF13522	Glutamine amidotransferase domain
CH46_233	PF16964	CH46_233
CH46_2330	PF02674	CH46_2330
CH46_2331	PF05036	Sporulation related domain
CH46_2332	PF02875	Mur ligase family, glutamate ligase domain
CH46_2332	PF08245	Mur ligase middle domain
CH46_2333	PF01039	Carboxyl transferase domain
CH46_2334	PF09335	CH46_2334
CH46_2335	PF01416	tRNA pseudouridine synthase
CH46_2336	PF01118	Semialdehyde dehydrogenase, NAD binding domain
CH46_2336	PF02774	Semialdehyde dehydrogenase, dimerisation domain
CH46_2337	PF01797	Transposase IS200 like
CH46_2338	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
CH46_2338	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
CH46_2338	PF11890	Domain of unknown function (DUF3410)
CH46_2339	PF02311	AraC-like ligand binding domain
CH46_2339	PF12833	Helix-turn-helix domain
CH46_2340	PF00892	EamA-like transporter family
CH46_2342	PF00419	Fimbrial protein
CH46_2343	PF01177	Asp/Glu/Hydantoin racemase
CH46_2344	PF00109	Beta-ketoacyl synthase, N-terminal domain
CH46_2344	PF02801	Beta-ketoacyl synthase, C-terminal domain
CH46_2345	PF01266	FAD dependent oxidoreductase
CH46_2345	PF05430	S-adenosyl-L-methionine-dependent methyltransferase
CH46_2346	PF08891	CH46_2346
CH46_2347	PF04315	CH46_2347
CH46_2348	PF01925	CH46_2348
CH46_2349	PF03411	Penicillin-insensitive murein endopeptidase
CH46_235	PF02472	Biopolymer transport protein ExbD/TolR
CH46_2350	PF01264	Chorismate synthase
CH46_2351	PF05175	Methyltransferase small domain
CH46_2352	PF01713	Smr domain
CH46_2353	PF00300	Histidine phosphatase superfamily (branch 1)
CH46_2354	PF00378	Enoyl-CoA hydratase/isomerase family
CH46_2354	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
CH46_2354	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
CH46_2355	PF00108	Thiolase, N-terminal domain
CH46_2355	PF02803	Thiolase, C-terminal domain
CH46_2356	PF04175	Protein of unknown function (DUF406)
CH46_2357	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
CH46_2358	PF04333	CH46_2358
CH46_2359	PF14559	Tetratricopeptide repeat
CH46_2360	PF03918	Cytochrome C biogenesis protein
CH46_2361	PF08534	Redoxin
CH46_2362	PF01578	CH46_2362
CH46_2362	PF16327	CH46_2362
CH46_2363	PF03100	CcmE
CH46_2364	PF04995	CH46_2364
CH46_2365	PF01578	CH46_2365
CH46_2366	PF03379	CH46_2366
CH46_2367	PF00005	ABC transporter
CH46_237	PF01618	CH46_237
CH46_2370	PF04011	LemA family
CH46_2371	PF09972	CH46_2371
CH46_2372	PF03831	PhnA protein
CH46_2372	PF08274	PhnA Zinc-Ribbon
CH46_2374	PF04965	Gene 25-like lysozyme
CH46_2375	PF07024	ImpE protein
CH46_2377	PF05488	PAAR motif
CH46_2378	PF05954	Phage late control gene D protein (GPD)
CH46_2379	PF06744	CH46_2379
CH46_2379	PF06761	CH46_2379
CH46_2379	PF14331	CH46_2379
CH46_238	PF01053	Cys/Met metabolism PLP-dependent enzyme
CH46_2380	PF00691	OmpA family
CH46_2380	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
CH46_2381	PF01695	IstB-like ATP binding protein
CH46_2382	PF01695	IstB-like ATP binding protein
CH46_2383	PF00665	Integrase core domain
CH46_2383	PF02796	Helix-turn-helix domain of resolvase
CH46_2384	PF02565	Recombination protein O C terminal
CH46_2384	PF11967	Recombination protein O N terminal
CH46_2385	PF01926	50S ribosome-binding GTPase
CH46_2385	PF07650	KH domain
CH46_2386	PF00035	Double-stranded RNA binding motif
CH46_2386	PF14622	Ribonuclease-III-like
CH46_2387	PF00717	Peptidase S24-like
CH46_2387	PF10502	Signal peptidase, peptidase S26
CH46_2388	PF00009	Elongation factor Tu GTP binding domain
CH46_2388	PF00679	Elongation factor G C-terminus
CH46_2388	PF03144	Elongation factor Tu domain 2
CH46_2388	PF06421	GTP-binding protein LepA C-terminus
CH46_239	PF09335	CH46_239
CH46_2390	PF04246	CH46_2390
CH46_2391	PF03888	MucB/RseB family
CH46_2391	PF17188	CH46_2391
CH46_2392	PF03872	Anti sigma-E protein RseA, N-terminal domain
CH46_2392	PF03873	Anti sigma-E protein RseA, C-terminal domain
CH46_2393	PF04542	Sigma-70 region 2
CH46_2393	PF08281	Sigma-70, region 4
CH46_2394	PF00890	FAD binding domain
CH46_2394	PF02910	Fumarate reductase flavoprotein C-term
CH46_2395	PF05175	Methyltransferase small domain
CH46_2396	PF00270	DEAD/DEAH box helicase
CH46_2396	PF00271	Helicase conserved C-terminal domain
CH46_24	PF06123	CH46_24
CH46_240	PF06719	CH46_240
CH46_240	PF12833	Helix-turn-helix domain
CH46_2400	PF11187	Protein of unknown function (DUF2974)
CH46_2401	PF01228	Glycine radical
CH46_2402	PF03167	Uracil DNA glycosylase superfamily
CH46_2403	PF01470	Pyroglutamyl peptidase
CH46_2404	PF06166	CH46_2404
CH46_2405	PF06149	CH46_2405
CH46_2406	PF03746	LamB/YcsF family
CH46_2407	PF02626	Allophanate hydrolase subunit 2
CH46_2408	PF02682	Allophanate hydrolase subunit 1
CH46_241	PF00465	Iron-containing alcohol dehydrogenase
CH46_2410	PF01784	NIF3 (NGG1p interacting factor 3)
CH46_2411	PF02112	CH46_2411
CH46_2412	PF00875	DNA photolyase
CH46_2412	PF03441	FAD binding domain of DNA photolyase
CH46_2413	PF08349	CH46_2413
CH46_2414	PF10725	CH46_2414
CH46_2415	PF03814	CH46_2415
CH46_2416	PF00122	E1-E2 ATPase
CH46_2416	PF00702	haloacid dehalogenase-like hydrolase
CH46_2417	PF02669	CH46_2417
CH46_2418	PF00512	His Kinase A (phospho-acceptor) domain
CH46_2418	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_2418	PF02702	Osmosensitive K+ channel His kinase sensor domain
CH46_2418	PF13492	GAF domain
CH46_2418	PF13493	Domain of unknown function (DUF4118)
CH46_2419	PF00072	Response regulator receiver domain
CH46_2419	PF00486	Transcriptional regulatory protein, C terminal
CH46_242	PF00248	Aldo/keto reductase family
CH46_2420	PF00892	EamA-like transporter family
CH46_2423	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
CH46_2423	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
CH46_2423	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
CH46_2423	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
CH46_2424	PF03925	SeqA protein
CH46_2424	PF17206	CH46_2424
CH46_2427	PF04794	YdjC-like protein
CH46_2428	PF07883	Cupin domain
CH46_2428	PF12833	Helix-turn-helix domain
CH46_2429	PF02255	PTS system, Lactose/Cellobiose specific IIA subunit
CH46_243	PF11842	CH46_243
CH46_2430	PF02378	Phosphotransferase system, EIIC
CH46_2431	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
CH46_2432	PF02537	CH46_2432
CH46_2433	PF02537	CH46_2433
CH46_2434	PF02254	TrkA-N domain
CH46_2434	PF07885	Ion channel
CH46_2435	PF06411	HdeA/HdeB family
CH46_2436	PF03824	CH46_2436
CH46_2437	PF03253	Urea transporter
CH46_2438	PF01774	UreD urease accessory protein
CH46_2439	PF02492	CobW/HypB/UreG, nucleotide-binding domain
CH46_244	PF04055	Radical SAM superfamily
CH46_244	PF08497	CH46_244
CH46_2440	PF01730	UreF
CH46_2441	PF02814	UreE urease accessory protein, N-terminal domain
CH46_2441	PF05194	UreE urease accessory protein, C-terminal domain
CH46_2442	PF00449	Urease alpha-subunit, N-terminal domain
CH46_2442	PF01979	Amidohydrolase family
CH46_2443	PF00699	Urease beta subunit
CH46_2444	PF00547	Urease, gamma subunit
CH46_2446	PF00005	ABC transporter
CH46_2447	PF00005	ABC transporter
CH46_2448	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_2449	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_245	PF07731	Multicopper oxidase
CH46_245	PF07732	Multicopper oxidase
CH46_2450	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH46_2451	PF00313	'Cold-shock' DNA-binding domain
CH46_2452	PF04899	CH46_2452
CH46_2453	PF00872	CH46_2453
CH46_2454	PF00872	CH46_2454
CH46_2456	PF06711	CH46_2456
CH46_2457	PF09400	Protein of unknown function (DUF2002)
CH46_2458	PF06392	CH46_2458
CH46_2459	PF00462	Glutaredoxin
CH46_246	PF01553	Acyltransferase
CH46_2460	PF07972	NrdI Flavodoxin like
CH46_2461	PF00317	Ribonucleotide reductase, all-alpha domain
CH46_2461	PF02867	Ribonucleotide reductase, barrel domain
CH46_2461	PF08343	Ribonucleotide reductase N-terminal
CH46_2462	PF00268	Ribonucleotide reductase, small chain
CH46_2463	PF00005	ABC transporter
CH46_2463	PF00571	CBS domain
CH46_2464	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_2465	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
CH46_2466	PF01522	Polysaccharide deacetylase
CH46_2467	PF00665	Integrase core domain
CH46_2467	PF02796	Helix-turn-helix domain of resolvase
CH46_247	PF00521	DNA gyrase/topoisomerase IV, subunit A
CH46_247	PF03989	DNA gyrase C-terminal domain, beta-propeller
CH46_2470	PF13356	Domain of unknown function (DUF4102)
CH46_2471	PF01527	Transposase
CH46_2473	PF12697	Alpha/beta hydrolase family
CH46_2475	PF01402	Ribbon-helix-helix protein, copG family
CH46_2476	PF00258	Flavodoxin
CH46_2477	PF01475	Ferric uptake regulator family
CH46_2478	PF00728	Glycosyl hydrolase family 20, catalytic domain
CH46_2478	PF02838	Glycosyl hydrolase family 20, domain 2
CH46_2478	PF03174	Chitobiase/beta-hexosaminidase C-terminal domain
CH46_2479	PF03173	Putative carbohydrate binding domain
CH46_248	PF02525	Flavodoxin-like fold
CH46_2480	PF03573	outer membrane porin, OprD family
CH46_2481	PF00749	tRNA synthetases class I (E and Q), catalytic domain
CH46_2481	PF03950	tRNA synthetases class I (E and Q), anti-codon binding domain
CH46_2482	PF01797	Transposase IS200 like
CH46_2483	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
CH46_2483	PF00367	phosphotransferase system, EIIB
CH46_2483	PF02378	Phosphotransferase system, EIIC
CH46_2484	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
CH46_2485	PF01979	Amidohydrolase family
CH46_2486	PF00480	ROK family
CH46_2486	PF01047	MarR family
CH46_2487	PF13242	HAD-hyrolase-like
CH46_2487	PF13344	Haloacid dehalogenase-like hydrolase
CH46_2488	PF00733	Asparagine synthase
CH46_2488	PF13537	Glutamine amidotransferase domain
CH46_249	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_249	PF03466	LysR substrate binding domain
CH46_2494	PF01494	FAD binding domain
CH46_2495	PF00919	Uncharacterized protein family UPF0004
CH46_2495	PF01938	TRAM domain
CH46_2495	PF04055	Radical SAM superfamily
CH46_2496	PF02562	PhoH-like protein
CH46_2497	PF02130	Uncharacterized protein family UPF0054
CH46_2498	PF00571	CBS domain
CH46_2498	PF03471	Transporter associated domain
CH46_2499	PF00795	Carbon-nitrogen hydrolase
CH46_25	PF00258	Flavodoxin
CH46_250	PF00204	DNA gyrase B
CH46_250	PF00986	DNA gyrase B subunit, carboxyl terminus
CH46_250	PF01751	Toprim domain
CH46_250	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_2500	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH46_2501	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_2502	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_2503	PF00005	ABC transporter
CH46_2504	PF07295	CH46_2504
CH46_2505	PF00133	tRNA synthetases class I (I, L, M and V)
CH46_2505	PF08264	Anticodon-binding domain of tRNA
CH46_2505	PF13603	Leucyl-tRNA synthetase, Domain 2
CH46_2506	PF04390	Lipopolysaccharide-assembly
CH46_2507	PF06144	DNA polymerase III, delta subunit
CH46_2507	PF14840	Processivity clamp loader gamma complex DNA pol III C-term
CH46_2508	PF01467	Cytidylyltransferase
CH46_2509	PF02410	Oligomerisation domain
CH46_251	PF05728	Uncharacterised protein family (UPF0227)
CH46_2510	PF02590	Predicted SPOUT methyltransferase
CH46_2511	PF00905	Penicillin binding protein transpeptidase domain
CH46_2511	PF03717	Penicillin-binding Protein dimerisation domain
CH46_2512	PF01098	CH46_2512
CH46_2513	PF03330	Rare lipoprotein A (RlpA)-like double-psi beta-barrel
CH46_2513	PF05036	Sporulation related domain
CH46_2514	PF00768	D-alanyl-D-alanine carboxypeptidase
CH46_2514	PF07943	Penicillin-binding protein 5, C-terminal domain
CH46_2515	PF04359	Protein of unknown function (DUF493)
CH46_2516	PF03099	Biotin/lipoate A/B protein ligase family
CH46_2517	PF04055	Radical SAM superfamily
CH46_2517	PF16881	CH46_2517
CH46_2518	PF02416	mttA/Hcf106 family
CH46_2519	PF02537	CH46_2519
CH46_252	PF00149	Calcineurin-like phosphoesterase
CH46_2520	PF00313	'Cold-shock' DNA-binding domain
CH46_2522	PF00196	Bacterial regulatory proteins, luxR family
CH46_2525	PF08971	Glycogen synthesis protein
CH46_2526	PF03992	Antibiotic biosynthesis monooxygenase
CH46_2527	PF00005	ABC transporter
CH46_2527	PF00664	ABC transporter transmembrane region
CH46_2529	PF04962	KduI/IolB family
CH46_253	PF06853	CH46_253
CH46_2530	PF01261	Xylose isomerase-like TIM barrel
CH46_2531	PF00294	pfkB family carbohydrate kinase
CH46_2531	PF09863	Uncharacterized protein conserved in bacteria (DUF2090)
CH46_2532	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
CH46_2532	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
CH46_2533	PF02653	CH46_2533
CH46_2534	PF00005	ABC transporter
CH46_2535	PF13407	Periplasmic binding protein domain
CH46_2536	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
CH46_2537	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
CH46_2538	PF00205	Thiamine pyrophosphate enzyme, central domain
CH46_2538	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CH46_2538	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
CH46_2539	PF00171	Aldehyde dehydrogenase family
CH46_254	PF00293	NUDIX domain
CH46_2541	PF01380	SIS domain
CH46_2541	PF01418	Helix-turn-helix domain, rpiR family
CH46_2542	PF07274	CH46_2542
CH46_2544	PF00207	Alpha-2-macroglobulin family
CH46_2544	PF01835	MG2 domain
CH46_2544	PF07703	Alpha-2-macroglobulin family N-terminal region
CH46_2544	PF11974	Alpha-2-macroglobulin MG1 domain
CH46_2545	PF00912	Transglycosylase
CH46_2546	PF00872	CH46_2546
CH46_2547	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
CH46_2548	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
CH46_2549	PF00356	Bacterial regulatory proteins, lacI family
CH46_2549	PF13377	Periplasmic binding protein-like domain
CH46_255	PF02321	Outer membrane efflux protein
CH46_2550	PF01515	Phosphate acetyl/butaryl transferase
CH46_2550	PF07085	DRTGG domain
CH46_2550	PF13500	AAA domain
CH46_2551	PF00871	Acetokinase family
CH46_2552	PF04217	CH46_2552
CH46_2553	PF03887	YfbU domain
CH46_2554	PF13419	Haloacid dehalogenase-like hydrolase
CH46_2555	PF02080	TrkA-C domain
CH46_2555	PF03600	Citrate transporter
CH46_2556	PF13023	HD domain
CH46_2557	PF00155	Aminotransferase class I and II
CH46_2558	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_2558	PF03466	LysR substrate binding domain
CH46_2559	PF00507	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
CH46_2560	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
CH46_2561	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit
CH46_2561	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
CH46_2562	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin
CH46_2563	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
CH46_2563	PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
CH46_2564	PF00384	Molybdopterin oxidoreductase
CH46_2564	PF01568	Molydopterin dinucleotide binding domain
CH46_2564	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
CH46_2564	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
CH46_2564	PF13510	2Fe-2S iron-sulfur cluster binding domain
CH46_2565	PF00146	NADH dehydrogenase
CH46_2566	PF12838	4Fe-4S dicluster domain
CH46_2567	PF00499	NADH-ubiquinone/plastoquinone oxidoreductase chain 6
CH46_2568	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
CH46_2569	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
CH46_2569	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
CH46_257	PF06693	CH46_257
CH46_2570	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
CH46_2571	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
CH46_2573	PF04074	Domain of unknown function (DUF386)
CH46_2574	PF01202	Shikimate kinase
CH46_2575	PF00106	short chain dehydrogenase
CH46_2576	PF02638	CH46_2576
CH46_2577	PF00356	Bacterial regulatory proteins, lacI family
CH46_2577	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
CH46_2578	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
CH46_2578	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
CH46_2579	PF07690	Major Facilitator Superfamily
CH46_258	PF03738	Glutathionylspermidine synthase preATP-grasp
CH46_2580	PF03928	Domain of unknown function (DUF336)
CH46_2581	PF00920	Dehydratase family
CH46_2583	PF05957	CH46_2583
CH46_2585	PF00425	chorismate binding enzyme
CH46_2586	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CH46_2586	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
CH46_2586	PF16582	CH46_2586
CH46_2587	PF12697	Alpha/beta hydrolase family
CH46_2588	PF00378	Enoyl-CoA hydratase/isomerase family
CH46_2589	PF13378	Enolase C-terminal domain-like
CH46_259	PF02900	Catalytic LigB subunit of aromatic ring-opening dioxygenase
CH46_2590	PF00501	AMP-binding enzyme
CH46_2591	PF00591	Glycosyl transferase family, a/b domain
CH46_2591	PF02885	Glycosyl transferase family, helical bundle domain
CH46_2592	PF07338	Protein of unknown function (DUF1471)
CH46_2593	PF05971	Protein of unknown function (DUF890)
CH46_2594	PF01695	IstB-like ATP binding protein
CH46_2595	PF01695	IstB-like ATP binding protein
CH46_2597	PF00665	Integrase core domain
CH46_2597	PF02796	Helix-turn-helix domain of resolvase
CH46_2598	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CH46_2598	PF08448	PAS fold
CH46_2598	PF13426	PAS domain
CH46_2599	PF00005	ABC transporter
CH46_26	PF00589	Phage integrase family
CH46_26	PF02899	Phage integrase, N-terminal SAM-like domain
CH46_260	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
CH46_2600	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_2601	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH46_2602	PF02698	DUF218 domain
CH46_2603	PF00210	Ferritin-like domain
CH46_2604	PF13649	Methyltransferase domain
CH46_2605	PF00583	Acetyltransferase (GNAT) family
CH46_2606	PF00892	EamA-like transporter family
CH46_2607	PF13505	Outer membrane protein beta-barrel domain
CH46_2608	PF01545	Cation efflux family
CH46_2609	PF16809	CH46_2609
CH46_2610	PF16809	CH46_2610
CH46_2611	PF00107	Zinc-binding dehydrogenase
CH46_2611	PF08240	Alcohol dehydrogenase GroES-like domain
CH46_2612	PF13407	Periplasmic binding protein domain
CH46_2613	PF00005	ABC transporter
CH46_2614	PF02653	CH46_2614
CH46_2615	PF00356	Bacterial regulatory proteins, lacI family
CH46_2615	PF13407	Periplasmic binding protein domain
CH46_2616	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_2616	PF03466	LysR substrate binding domain
CH46_2617	PF00180	Isocitrate/isopropylmalate dehydrogenase
CH46_2618	PF02028	BCCT family transporter
CH46_2619	PF00355	Rieske [2Fe-2S] domain
CH46_2619	PF00848	Ring hydroxylating alpha subunit (catalytic domain)
CH46_262	PF04380	CH46_262
CH46_2620	PF00111	2Fe-2S iron-sulfur cluster binding domain
CH46_2620	PF00175	Oxidoreductase NAD-binding domain
CH46_2620	PF00970	Oxidoreductase FAD-binding domain
CH46_2621	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
CH46_2621	PF08479	POTRA domain, ShlB-type
CH46_2621	PF17287	CH46_2621
CH46_2622	PF04829	CH46_2622
CH46_2622	PF05594	CH46_2622
CH46_2622	PF05860	haemagglutination activity domain
CH46_2622	PF13018	CH46_2622
CH46_2622	PF13332	CH46_2622
CH46_2623	PF10004	CH46_2623
CH46_2625	PF04829	CH46_2625
CH46_2627	PF14106	CH46_2627
CH46_263	PF13520	Amino acid permease
CH46_2630	PF00005	ABC transporter
CH46_2630	PF08402	TOBE domain
CH46_2631	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
CH46_2631	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
CH46_2631	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
CH46_2631	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
CH46_2632	PF00356	Bacterial regulatory proteins, lacI family
CH46_2632	PF13377	Periplasmic binding protein-like domain
CH46_2633	PF13416	Bacterial extracellular solute-binding protein
CH46_2634	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_2635	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_2636	PF04041	Domain of unknown function (DUF377)
CH46_2637	PF08950	Protein of unknown function (DUF1861)
CH46_264	PF00294	pfkB family carbohydrate kinase
CH46_264	PF01467	Cytidylyltransferase
CH46_2640	PF00924	Mechanosensitive ion channel
CH46_2641	PF01867	CRISPR associated protein Cas1
CH46_2643	PF09611	CH46_2643
CH46_2644	PF09614	CH46_2644
CH46_2645	PF09615	CH46_2645
CH46_2646	PF09618	CRISPR-associated protein (Cas_Csy4)
CH46_2647	PF00248	Aldo/keto reductase family
CH46_2648	PF08714	Formaldehyde-activating enzyme (Fae)
CH46_2649	PF00083	Sugar (and other) transporter
CH46_265	PF03710	Glutamate-ammonia ligase adenylyltransferase
CH46_265	PF08335	GlnD PII-uridylyltransferase
CH46_2651	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_2651	PF03466	LysR substrate binding domain
CH46_2652	PF00765	Autoinducer synthetase
CH46_2653	PF00196	Bacterial regulatory proteins, luxR family
CH46_2653	PF03472	Autoinducer binding domain
CH46_2654	PF00892	EamA-like transporter family
CH46_2656	PF00581	Rhodanese-like domain
CH46_2656	PF12368	CH46_2656
CH46_2657	PF01594	CH46_2657
CH46_2658	PF00196	Bacterial regulatory proteins, luxR family
CH46_2659	PF01266	FAD dependent oxidoreductase
CH46_266	PF01928	CYTH domain
CH46_2660	PF00872	CH46_2660
CH46_2661	PF13419	Haloacid dehalogenase-like hydrolase
CH46_2662	PF14002	CH46_2662
CH46_2663	PF03881	Fructosamine kinase
CH46_2664	PF00950	CH46_2664
CH46_2665	PF00950	CH46_2665
CH46_2666	PF00005	ABC transporter
CH46_2667	PF01297	Periplasmic solute binding protein family
CH46_2668	PF01464	Transglycosylase SLT domain
CH46_2669	PF01914	CH46_2669
CH46_267	PF08239	Bacterial SH3 domain
CH46_2671	PF13619	CH46_2671
CH46_2672	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
CH46_2672	PF02824	TGS domain
CH46_2672	PF03129	Anticodon binding domain
CH46_2672	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
CH46_2673	PF00707	Translation initiation factor IF-3, C-terminal domain
CH46_2674	PF01632	Ribosomal protein L35
CH46_2675	PF00453	Ribosomal protein L20
CH46_2676	PF01409	tRNA synthetases class II core domain (F)
CH46_2676	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
CH46_2677	PF01588	Putative tRNA binding domain
CH46_2677	PF03147	Ferredoxin-fold anticodon binding domain
CH46_2677	PF03483	B3/4 domain
CH46_2677	PF03484	tRNA synthetase B5 domain
CH46_2678	PF00216	Bacterial DNA-binding protein
CH46_2679	PF10697	CH46_2679
CH46_268	PF01743	Poly A polymerase head domain
CH46_268	PF01966	HD domain
CH46_268	PF12627	Probable RNA and SrmB- binding site of polymerase A
CH46_2680	PF01032	FecCD transport family
CH46_2681	PF00255	Glutathione peroxidase
CH46_2682	PF00005	ABC transporter
CH46_2683	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
CH46_2684	PF00535	Glycosyl transferase family 2
CH46_2685	PF00551	Formyl transferase
CH46_2685	PF01370	NAD dependent epimerase/dehydratase family
CH46_2685	PF02911	Formyl transferase, C-terminal domain
CH46_2686	PF01522	Polysaccharide deacetylase
CH46_2687	PF02366	CH46_2687
CH46_2688	PF00892	EamA-like transporter family
CH46_269	PF02673	CH46_269
CH46_2690	PF00877	NlpC/P60 family
CH46_2691	PF03099	Biotin/lipoate A/B protein ligase family
CH46_2691	PF10437	Bacterial lipoate protein ligase C-terminus
CH46_2692	PF02696	CH46_2692
CH46_2693	PF02696	CH46_2693
CH46_2694	PF00793	DAHP synthetase I family
CH46_2695	PF03618	CH46_2695
CH46_2696	PF00391	PEP-utilising enzyme, mobile domain
CH46_2696	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
CH46_2696	PF02896	PEP-utilising enzyme, TIM barrel domain
CH46_2697	PF01594	CH46_2697
CH46_2698	PF01565	FAD binding domain
CH46_2698	PF02913	FAD linked oxidases, C-terminal domain
CH46_2698	PF13183	4Fe-4S dicluster domain
CH46_2699	PF03061	Thioesterase superfamily
CH46_27	PF10411	Disulfide bond isomerase protein N-terminus
CH46_27	PF13098	Thioredoxin-like domain
CH46_270	PF02152	Dihydroneopterin aldolase
CH46_2700	PF01521	Iron-sulphur cluster biosynthesis
CH46_2701	PF01458	Uncharacterized protein family (UPF0051)
CH46_2702	PF00005	ABC transporter
CH46_2703	PF01458	Uncharacterized protein family (UPF0051)
CH46_2704	PF00266	Aminotransferase class-V
CH46_2705	PF02657	Fe-S metabolism associated domain
CH46_2706	PF03734	L,D-transpeptidase catalytic domain
CH46_2707	PF00665	Integrase core domain
CH46_2707	PF01695	IstB-like ATP binding protein
CH46_2707	PF02796	Helix-turn-helix domain of resolvase
CH46_2708	PF01797	Transposase IS200 like
CH46_2709	PF04728	Lipoprotein leucine-zipper
CH46_271	PF02660	CH46_271
CH46_2710	PF00224	Pyruvate kinase, barrel domain
CH46_2710	PF02887	Pyruvate kinase, alpha/beta domain
CH46_2713	PF01554	MatE
CH46_2714	PF00677	Lumazine binding domain
CH46_2717	PF07690	Major Facilitator Superfamily
CH46_2718	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_2718	PF03466	LysR substrate binding domain
CH46_2719	PF00356	Bacterial regulatory proteins, lacI family
CH46_2719	PF13377	Periplasmic binding protein-like domain
CH46_272	PF00814	Glycoprotease family
CH46_2721	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
CH46_2721	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
CH46_2722	PF00877	NlpC/P60 family
CH46_2724	PF00462	Glutaredoxin
CH46_2725	PF00929	Exonuclease
CH46_2726	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
CH46_2728	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
CH46_2729	PF00440	Bacterial regulatory proteins, tetR family
CH46_2729	PF16925	CH46_2729
CH46_273	PF01165	Ribosomal protein S21
CH46_2730	PF00884	Sulfatase
CH46_2730	PF08019	CH46_2730
CH46_2731	PF06945	CH46_2731
CH46_2732	PF00248	Aldo/keto reductase family
CH46_2733	PF01047	MarR family
CH46_2734	PF05433	CH46_2734
CH46_2735	PF03702	Uncharacterised protein family (UPF0075)
CH46_2736	PF09864	Membrane-bound lysozyme-inhibitor of c-type lysozyme
CH46_2737	PF01243	Pyridoxamine 5'-phosphate oxidase
CH46_2737	PF10590	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
CH46_2738	PF00579	tRNA synthetases class I (W and Y)
CH46_2738	PF01479	S4 domain
CH46_2739	PF08543	Phosphomethylpyrimidine kinase
CH46_274	PF01807	CHC2 zinc finger
CH46_274	PF08275	DNA primase catalytic core, N-terminal domain
CH46_274	PF08278	DNA primase DnaG DnaB-binding
CH46_274	PF10410	DnaB-helicase binding domain of primase
CH46_274	PF13155	Toprim-like
CH46_2740	PF00043	Glutathione S-transferase, C-terminal domain
CH46_2740	PF02798	Glutathione S-transferase, N-terminal domain
CH46_2741	PF00665	Integrase core domain
CH46_2741	PF01695	IstB-like ATP binding protein
CH46_2741	PF02796	Helix-turn-helix domain of resolvase
CH46_2742	PF11656	CH46_2742
CH46_2743	PF06930	CH46_2743
CH46_2744	PF00854	POT family
CH46_2747	PF00005	ABC transporter
CH46_2748	PF00005	ABC transporter
CH46_2748	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CH46_2749	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_2749	PF12911	CH46_2749
CH46_275	PF00140	Sigma-70 factor, region 1
CH46_275	PF03979	Sigma-70 factor, region 1
CH46_275	PF04539	Sigma-70 region 3
CH46_275	PF04542	Sigma-70 region 2
CH46_275	PF04545	Sigma-70, region 4
CH46_275	PF04546	Sigma-70, non-essential region
CH46_2750	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_2751	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH46_2752	PF01797	Transposase IS200 like
CH46_2753	PF00158	Sigma-54 interaction domain
CH46_2753	PF02954	Bacterial regulatory protein, Fis family
CH46_2754	PF04012	CH46_2754
CH46_2755	PF06667	CH46_2755
CH46_2756	PF04024	CH46_2756
CH46_2757	PF09584	CH46_2757
CH46_2758	PF04317	CH46_2758
CH46_2759	PF05128	CH46_2759
CH46_2760	PF08808	CH46_2760
CH46_2761	PF09722	CH46_2761
CH46_2762	PF00158	Sigma-54 interaction domain
CH46_2762	PF00989	PAS fold
CH46_2763	PF01797	Transposase IS200 like
CH46_2764	PF08534	Redoxin
CH46_2765	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
CH46_2765	PF13378	Enolase C-terminal domain-like
CH46_2766	PF00246	Zinc carboxypeptidase
CH46_2767	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH46_2768	PF01544	CorA-like Mg2+ transporter protein
CH46_2769	PF13411	MerR HTH family regulatory protein
CH46_2770	PF07859	alpha/beta hydrolase fold
CH46_2772	PF01171	PP-loop family
CH46_2773	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
CH46_2773	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
CH46_2773	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CH46_2773	PF10371	Domain of unknown function
CH46_2773	PF12838	4Fe-4S dicluster domain
CH46_2773	PF17147	CH46_2773
CH46_2774	PF00893	Small Multidrug Resistance protein
CH46_2775	PF02308	CH46_2775
CH46_2776	PF03891	CH46_2776
CH46_2777	PF03724	META domain
CH46_2778	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
CH46_2778	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
CH46_2779	PF11739	CH46_2779
CH46_278	PF03592	Terminase small subunit
CH46_2780	PF13617	CH46_2780
CH46_2781	PF07027	CH46_2781
CH46_2782	PF01232	Mannitol dehydrogenase Rossmann domain
CH46_2782	PF08125	Mannitol dehydrogenase C-terminal domain
CH46_2783	PF04198	Putative sugar-binding domain
CH46_2784	PF02525	Flavodoxin-like fold
CH46_2785	PF00270	DEAD/DEAH box helicase
CH46_2785	PF00271	Helicase conserved C-terminal domain
CH46_2785	PF04408	Helicase associated domain (HA2)
CH46_2785	PF07717	Oligonucleotide/oligosaccharide-binding (OB)-fold
CH46_2785	PF11898	CH46_2785
CH46_2786	PF05973	CH46_2786
CH46_2787	PF01381	Helix-turn-helix
CH46_2788	PF00089	Trypsin
CH46_2790	PF01292	Prokaryotic cytochrome b561
CH46_2791	PF04264	YceI-like domain
CH46_2793	PF03497	Anthrax toxin LF subunit
CH46_2794	PF01797	Transposase IS200 like
CH46_2795	PF02074	Carboxypeptidase Taq (M32) metallopeptidase
CH46_2796	PF00512	His Kinase A (phospho-acceptor) domain
CH46_2796	PF00672	HAMP domain
CH46_2796	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_2797	PF00072	Response regulator receiver domain
CH46_2797	PF00486	Transcriptional regulatory protein, C terminal
CH46_2799	PF13520	Amino acid permease
CH46_28	PF01368	DHH family
CH46_28	PF02272	DHHA1 domain
CH46_2800	PF07338	Protein of unknown function (DUF1471)
CH46_2801	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
CH46_2801	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
CH46_2801	PF12769	Domain of unknown function (DUF3814)
CH46_2802	PF02233	NAD(P) transhydrogenase beta subunit
CH46_2803	PF00582	Universal stress protein family
CH46_2804	PF00027	Cyclic nucleotide-binding domain
CH46_2804	PF13545	Crp-like helix-turn-helix domain
CH46_2805	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
CH46_2805	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
CH46_2806	PF00245	Alkaline phosphatase
CH46_2807	PF13208	CH46_2807
CH46_2808	PF15615	CH46_2808
CH46_2809	PF13419	Haloacid dehalogenase-like hydrolase
CH46_2810	PF13710	ACT domain
CH46_2811	PF00205	Thiamine pyrophosphate enzyme, central domain
CH46_2811	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CH46_2811	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
CH46_2812	PF07313	Protein of unknown function (DUF1460)
CH46_2813	PF10139	CH46_2813
CH46_2814	PF07520	CH46_2814
CH46_2816	PF01048	Phosphorylase superfamily
CH46_2816	PF10423	Bacterial AMP nucleoside phosphorylase N-terminus
CH46_2817	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_2818	PF13379	NMT1-like family
CH46_2819	PF13407	Periplasmic binding protein domain
CH46_282	PF01695	IstB-like ATP binding protein
CH46_2821	PF00356	Bacterial regulatory proteins, lacI family
CH46_2821	PF13377	Periplasmic binding protein-like domain
CH46_2824	PF00263	CH46_2824
CH46_2825	PF05707	Zonular occludens toxin (Zot)
CH46_2826	PF10734	CH46_2826
CH46_283	PF00665	Integrase core domain
CH46_283	PF02796	Helix-turn-helix domain of resolvase
CH46_2830	PF17426	CH46_2830
CH46_2831	PF05144	CH46_2831
CH46_2831	PF05155	CH46_2831
CH46_2832	PF01381	Helix-turn-helix
CH46_2833	PF05707	Zonular occludens toxin (Zot)
CH46_2834	PF10734	CH46_2834
CH46_2838	PF17426	CH46_2838
CH46_2839	PF05144	CH46_2839
CH46_2839	PF05155	CH46_2839
CH46_2840	PF01381	Helix-turn-helix
CH46_2843	PF00654	Voltage gated chloride channel
CH46_2844	PF13500	AAA domain
CH46_2846	PF00480	ROK family
CH46_2847	PF03466	LysR substrate binding domain
CH46_2848	PF07690	Major Facilitator Superfamily
CH46_2849	PF05472	DNA replication terminus site-binding protein (Ter protein)
CH46_285	PF02661	Fic/DOC family
CH46_2850	PF00206	Lyase
CH46_2850	PF10415	Fumarase C C-terminus
CH46_2851	PF01238	Phosphomannose isomerase type I
CH46_2852	PF06097	CH46_2852
CH46_2854	PF13593	SBF-like CPA transporter family (DUF4137)
CH46_2855	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
CH46_2855	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
CH46_2856	PF02311	AraC-like ligand binding domain
CH46_2856	PF12833	Helix-turn-helix domain
CH46_2857	PF02653	CH46_2857
CH46_2858	PF00005	ABC transporter
CH46_2859	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
CH46_2860	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
CH46_2860	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
CH46_2861	PF02610	L-arabinose isomerase
CH46_2861	PF11762	L-arabinose isomerase C-terminal domain
CH46_2863	PF00005	ABC transporter
CH46_2863	PF00664	ABC transporter transmembrane region
CH46_2863	PF03412	Peptidase C39 family
CH46_2864	PF00529	HlyD family secretion protein
CH46_2865	PF13533	Biotin-lipoyl like
CH46_2866	PF00005	ABC transporter
CH46_2866	PF00664	ABC transporter transmembrane region
CH46_2867	PF10754	CH46_2867
CH46_2868	PF02508	CH46_2868
CH46_2869	PF04060	Putative Fe-S cluster
CH46_2869	PF14697	4Fe-4S dicluster domain
CH46_2870	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
CH46_2870	PF10531	SLBB domain
CH46_2870	PF13237	4Fe-4S dicluster domain
CH46_2870	PF13375	RnfC Barrel sandwich hybrid domain
CH46_2871	PF06445	GyrI-like small molecule binding domain
CH46_2871	PF12833	Helix-turn-helix domain
CH46_2872	PF03116	CH46_2872
CH46_2873	PF04205	FMN-binding domain
CH46_2874	PF02508	CH46_2874
CH46_2875	PF00633	Helix-hairpin-helix motif
CH46_2875	PF00730	HhH-GPD superfamily base excision DNA repair protein
CH46_2875	PF10576	Iron-sulfur binding domain of endonuclease III
CH46_2876	PF01370	NAD dependent epimerase/dehydratase family
CH46_2877	PF07690	Major Facilitator Superfamily
CH46_2878	PF00575	S1 RNA binding domain
CH46_2878	PF00773	RNB domain
CH46_2878	PF08206	Ribonuclease B OB domain
CH46_2879	PF02554	CH46_2879
CH46_2879	PF13722	CH46_2879
CH46_288	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_288	PF03466	LysR substrate binding domain
CH46_2880	PF04328	CH46_2880
CH46_2881	PF00923	Transaldolase
CH46_2882	PF09932	CH46_2882
CH46_2883	PF00596	Class II Aldolase and Adducin N-terminal domain
CH46_2884	PF05433	CH46_2884
CH46_2885	PF01253	Translation initiation factor SUI1
CH46_2886	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
CH46_2888	PF13176	Tetratricopeptide repeat
CH46_2888	PF13432	Tetratricopeptide repeat
CH46_2889	PF06305	CH46_2889
CH46_2890	PF01569	PAP2 superfamily
CH46_2891	PF00925	GTP cyclohydrolase II
CH46_2892	PF00330	Aconitase family (aconitate hydratase)
CH46_2892	PF00694	Aconitase C-terminal domain
CH46_2894	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_2894	PF03466	LysR substrate binding domain
CH46_2895	PF01131	DNA topoisomerase
CH46_2895	PF01396	CH46_2895
CH46_2895	PF01751	Toprim domain
CH46_2895	PF08272	Topoisomerase I zinc-ribbon-like
CH46_2896	PF10692	Protein of unknown function (DUF2498)
CH46_2897	PF01343	Peptidase family S49
CH46_2897	PF08496	CH46_2897
CH46_2898	PF00106	short chain dehydrogenase
CH46_2899	PF02572	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
CH46_2899	PF12557	Cob(I)alamin adenosyltransferase N terminal
CH46_29	PF00472	RF-1 domain
CH46_29	PF03462	PCRF domain
CH46_290	PF08803	Putative mono-oxygenase ydhR
CH46_2900	PF00849	RNA pseudouridylate synthase
CH46_2900	PF01479	S4 domain
CH46_2901	PF01300	Telomere recombination
CH46_2902	PF02811	PHP domain
CH46_2903	PF00425	chorismate binding enzyme
CH46_2903	PF04715	Anthranilate synthase component I, N terminal region
CH46_2904	PF00117	Glutamine amidotransferase class-I
CH46_2905	PF00591	Glycosyl transferase family, a/b domain
CH46_2905	PF02885	Glycosyl transferase family, helical bundle domain
CH46_2906	PF00218	Indole-3-glycerol phosphate synthase
CH46_2906	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
CH46_2907	PF00291	Pyridoxal-phosphate dependent enzyme
CH46_2908	PF00290	Tryptophan synthase alpha chain
CH46_2909	PF04972	BON domain
CH46_291	PF01042	Endoribonuclease L-PSP
CH46_2910	PF03922	OmpW family
CH46_2911	PF06790	CH46_2911
CH46_2912	PF01740	STAS domain
CH46_2913	PF00916	CH46_2913
CH46_2914	PF04279	CH46_2914
CH46_2915	PF03061	Thioesterase superfamily
CH46_2916	PF00872	CH46_2916
CH46_2917	PF00872	CH46_2917
CH46_2918	PF03544	Gram-negative bacterial TonB protein C-terminal
CH46_2918	PF16031	CH46_2918
CH46_2919	PF03795	YCII-related domain
CH46_292	PF01042	Endoribonuclease L-PSP
CH46_2920	PF13453	CH46_2920
CH46_2922	PF13505	Outer membrane protein beta-barrel domain
CH46_2923	PF13091	PLD-like domain
CH46_2923	PF13396	CH46_2923
CH46_2924	PF04269	Protein of unknown function, DUF440
CH46_2926	PF00005	ABC transporter
CH46_2926	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CH46_2927	PF00005	ABC transporter
CH46_2927	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CH46_2928	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_2928	PF12911	CH46_2928
CH46_2929	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_293	PF08348	CH46_293
CH46_2930	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH46_2931	PF01914	CH46_2931
CH46_2932	PF00171	Aldehyde dehydrogenase family
CH46_2932	PF00465	Iron-containing alcohol dehydrogenase
CH46_2933	PF00665	Integrase core domain
CH46_2933	PF02796	Helix-turn-helix domain of resolvase
CH46_2934	PF01695	IstB-like ATP binding protein
CH46_2935	PF00265	Thymidine kinase
CH46_2936	PF00816	H-NS histone family
CH46_2937	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
CH46_2937	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
CH46_2937	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
CH46_2938	PF00072	Response regulator receiver domain
CH46_2939	PF02810	SEC-C motif
CH46_294	PF10604	Polyketide cyclase / dehydrase and lipid transport
CH46_2940	PF00872	CH46_2940
CH46_2941	PF00551	Formyl transferase
CH46_2941	PF01842	ACT domain
CH46_2944	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_2945	PF03372	Endonuclease/Exonuclease/phosphatase family
CH46_2946	PF00293	NUDIX domain
CH46_2947	PF07383	CH46_2947
CH46_2948	PF01131	DNA topoisomerase
CH46_2948	PF01751	Toprim domain
CH46_2949	PF00586	AIR synthase related protein, N-terminal domain
CH46_2949	PF02769	AIR synthase related protein, C-terminal domain
CH46_295	PF03553	CH46_295
CH46_2950	PF00881	Nitroreductase family
CH46_2951	PF01343	Peptidase family S49
CH46_2952	PF00710	Asparaginase
CH46_2953	PF00857	Isochorismatase family
CH46_2954	PF07023	CH46_2954
CH46_2955	PF01641	SelR domain
CH46_2956	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CH46_2956	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
CH46_2957	PF01263	Aldose 1-epimerase
CH46_2958	PF06629	CH46_2958
CH46_2959	PF06798	CH46_2959
CH46_2959	PF08298	PrkA AAA domain
CH46_296	PF00155	Aminotransferase class I and II
CH46_2960	PF04285	CH46_2960
CH46_2961	PF00892	EamA-like transporter family
CH46_2962	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_2962	PF03466	LysR substrate binding domain
CH46_2963	PF02678	Pirin
CH46_2963	PF05726	Pirin C-terminal cupin domain
CH46_2964	PF07690	Major Facilitator Superfamily
CH46_2965	PF01266	FAD dependent oxidoreductase
CH46_2966	PF04293	CH46_2966
CH46_2967	PF00392	Bacterial regulatory proteins, gntR family
CH46_2967	PF07840	FadR C-terminal domain
CH46_2968	PF06450	CH46_2968
CH46_2969	PF02600	Disulfide bond formation protein DsbB
CH46_2972	PF00266	Aminotransferase class-V
CH46_2973	PF07690	Major Facilitator Superfamily
CH46_2974	PF00872	CH46_2974
CH46_2975	PF02413	CH46_2975
CH46_2978	PF09327	CH46_2978
CH46_2978	PF13550	CH46_2978
CH46_298	PF17090	CH46_298
CH46_2981	PF06805	CH46_2981
CH46_2983	PF13248	CH46_2983
CH46_2984	PF02498	CH46_2984
CH46_2986	PF03869	Arc-like DNA binding domain
CH46_2988	PF00877	NlpC/P60 family
CH46_2988	PF14464	Prokaryotic homologs of the JAB domain
CH46_2989	PF05100	CH46_2989
CH46_299	PF13437	HlyD family secretion protein
CH46_299	PF13533	Biotin-lipoyl like
CH46_2990	PF01797	Transposase IS200 like
CH46_2991	PF05939	CH46_2991
CH46_2992	PF06791	CH46_2992
CH46_2992	PF09718	CH46_2992
CH46_2993	PF08748	CH46_2993
CH46_2994	PF02368	Bacterial Ig-like domain (group 2)
CH46_2994	PF08813	CH46_2994
CH46_2995	PF13554	Bacteriophage related domain of unknown function
CH46_3	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
CH46_30	PF00152	tRNA synthetases class II (D, K and N)
CH46_30	PF01336	OB-fold nucleic acid binding domain
CH46_300	PF04632	CH46_300
CH46_3000	PF02368	Bacterial Ig-like domain (group 2)
CH46_3003	PF13264	CH46_3003
CH46_3006	PF00872	CH46_3006
CH46_3008	PF10045	CH46_3008
CH46_301	PF02321	Outer membrane efflux protein
CH46_3010	PF03374	CH46_3010
CH46_3012	PF03245	CH46_3012
CH46_3013	PF00959	Phage lysozyme
CH46_3014	PF16080	CH46_3014
CH46_3018	PF02498	CH46_3018
CH46_3019	PF06530	CH46_3019
CH46_302	PF00933	Glycosyl hydrolase family 3 N terminal domain
CH46_302	PF01915	Glycosyl hydrolase family 3 C-terminal domain
CH46_302	PF14310	Fibronectin type III-like domain
CH46_3020	PF05766	CH46_3020
CH46_3021	PF05772	NinB protein
CH46_3022	PF02086	D12 class N6 adenine-specific DNA methyltransferase
CH46_3023	PF06806	Putative excisionase (DUF1233)
CH46_3024	PF01695	IstB-like ATP binding protein
CH46_3025	PF01695	IstB-like ATP binding protein
CH46_3026	PF00665	Integrase core domain
CH46_3026	PF02796	Helix-turn-helix domain of resolvase
CH46_3027	PF00589	Phage integrase family
CH46_3027	PF12167	CH46_3027
CH46_3028	PF03692	CH46_3028
CH46_3029	PF01557	Fumarylacetoacetate (FAA) hydrolase family
CH46_3030	PF13406	Transglycosylase SLT domain
CH46_3031	PF05166	YcgL domain
CH46_3032	PF03775	Septum formation inhibitor MinC, C-terminal domain
CH46_3032	PF05209	Septum formation inhibitor MinC, N-terminal domain
CH46_3033	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
CH46_3034	PF03776	Septum formation topological specificity factor MinE
CH46_3035	PF00570	HRDC domain
CH46_3035	PF01612	3'-5' exonuclease
CH46_3036	PF00501	AMP-binding enzyme
CH46_3036	PF13193	AMP-binding enzyme C-terminal domain
CH46_3037	PF03843	CH46_3037
CH46_3038	PF00814	Glycoprotease family
CH46_3039	PF06733	DEAD_2
CH46_3039	PF13307	Helicase C-terminal domain
CH46_304	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_3040	PF01042	Endoribonuclease L-PSP
CH46_3041	PF00893	Small Multidrug Resistance protein
CH46_3042	PF00893	Small Multidrug Resistance protein
CH46_3043	PF01081	KDPG and KHG aldolase
CH46_3045	PF00479	Glucose-6-phosphate dehydrogenase, NAD binding domain
CH46_3045	PF02781	Glucose-6-phosphate dehydrogenase, C-terminal domain
CH46_3046	PF01380	SIS domain
CH46_3046	PF01418	Helix-turn-helix domain, rpiR family
CH46_3047	PF00224	Pyruvate kinase, barrel domain
CH46_3047	PF02887	Pyruvate kinase, alpha/beta domain
CH46_3048	PF03279	CH46_3048
CH46_3049	PF01551	Peptidase family M23
CH46_3049	PF04225	Opacity-associated protein A LysM-like domain
CH46_3049	PF08525	CH46_3049
CH46_305	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_3050	PF01297	Periplasmic solute binding protein family
CH46_3051	PF00005	ABC transporter
CH46_3052	PF00950	CH46_3052
CH46_3053	PF05491	Holliday junction DNA helicase ruvB C-terminus
CH46_3053	PF05496	Holliday junction DNA helicase ruvB N-terminus
CH46_3054	PF01330	RuvA N terminal domain
CH46_3054	PF07499	RuvA, C-terminal domain
CH46_3054	PF14520	Helix-hairpin-helix domain
CH46_3055	PF02075	Crossover junction endodeoxyribonuclease RuvC
CH46_3056	PF01709	Transcriptional regulator
CH46_3057	PF00293	NUDIX domain
CH46_3058	PF00152	tRNA synthetases class II (D, K and N)
CH46_3058	PF01336	OB-fold nucleic acid binding domain
CH46_3058	PF02938	GAD domain
CH46_3059	PF01904	Protein of unknown function DUF72
CH46_306	PF01547	Bacterial extracellular solute-binding protein
CH46_3060	PF01124	MAPEG family
CH46_3061	PF13649	Methyltransferase domain
CH46_3062	PF08003	Protein of unknown function (DUF1698)
CH46_3063	PF03932	CutC family
CH46_3064	PF06185	YecM protein
CH46_3065	PF00750	tRNA synthetases class I (R)
CH46_3065	PF03485	Arginyl tRNA synthetase N terminal domain
CH46_3065	PF05746	DALR anticodon binding domain
CH46_3066	PF05860	haemagglutination activity domain
CH46_3066	PF13332	CH46_3066
CH46_3067	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
CH46_3067	PF08479	POTRA domain, ShlB-type
CH46_3067	PF17287	CH46_3067
CH46_3068	PF03023	CH46_3068
CH46_3069	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
CH46_307	PF00356	Bacterial regulatory proteins, lacI family
CH46_307	PF13377	Periplasmic binding protein-like domain
CH46_3070	PF13302	Acetyltransferase (GNAT) domain
CH46_3071	PF07690	Major Facilitator Superfamily
CH46_3072	PF07273	Protein of unknown function (DUF1439)
CH46_3073	PF02613	Nitrate reductase delta subunit
CH46_3074	PF02811	PHP domain
CH46_3076	PF00480	ROK family
CH46_3076	PF13412	Winged helix-turn-helix DNA-binding
CH46_3077	PF03009	Glycerophosphoryl diester phosphodiesterase family
CH46_3078	PF00005	ABC transporter
CH46_3079	PF01797	Transposase IS200 like
CH46_3080	PF00005	ABC transporter
CH46_3081	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_3082	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_3083	PF13416	Bacterial extracellular solute-binding protein
CH46_3084	PF03009	Glycerophosphoryl diester phosphodiesterase family
CH46_3086	PF00916	CH46_3086
CH46_3087	PF00665	Integrase core domain
CH46_3087	PF02796	Helix-turn-helix domain of resolvase
CH46_3088	PF01695	IstB-like ATP binding protein
CH46_3089	PF01740	STAS domain
CH46_309	PF00005	ABC transporter
CH46_309	PF08402	TOBE domain
CH46_3090	PF01797	Transposase IS200 like
CH46_3091	PF00793	DAHP synthetase I family
CH46_3092	PF13369	CH46_3092
CH46_3092	PF13371	Tetratricopeptide repeat
CH46_3093	PF04247	CH46_3093
CH46_3094	PF13847	Methyltransferase domain
CH46_3095	PF00472	RF-1 domain
CH46_3095	PF03462	PCRF domain
CH46_3096	PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain
CH46_3096	PF01488	Shikimate / quinate 5-dehydrogenase
CH46_3096	PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
CH46_3097	PF03550	Outer membrane lipoprotein LolB
CH46_3098	PF00288	GHMP kinases N terminal domain
CH46_3098	PF08544	GHMP kinases C terminal
CH46_3099	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
CH46_3099	PF14572	Phosphoribosyl synthetase-associated domain
CH46_310	PF10091	Putative glucoamylase
CH46_3100	PF10762	CH46_3100
CH46_3101	PF01195	Peptidyl-tRNA hydrolase
CH46_3102	PF01926	50S ribosome-binding GTPase
CH46_3102	PF06071	Protein of unknown function (DUF933)
CH46_3104	PF00665	Integrase core domain
CH46_3105	PF00581	Rhodanese-like domain
CH46_3106	PF07859	alpha/beta hydrolase fold
CH46_3108	PF13316	CH46_3108
CH46_3109	PF14358	CH46_3109
CH46_311	PF13557	CH46_311
CH46_3110	PF12682	Flavodoxin
CH46_3111	PF01738	Dienelactone hydrolase family
CH46_3112	PF00072	Response regulator receiver domain
CH46_3112	PF00486	Transcriptional regulatory protein, C terminal
CH46_3113	PF00512	His Kinase A (phospho-acceptor) domain
CH46_3113	PF00672	HAMP domain
CH46_3113	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_3114	PF02627	Carboxymuconolactone decarboxylase family
CH46_3115	PF07883	Cupin domain
CH46_3116	PF12697	Alpha/beta hydrolase family
CH46_3117	PF13646	HEAT repeats
CH46_312	PF03797	Autotransporter beta-domain
CH46_3121	PF00106	short chain dehydrogenase
CH46_3122	PF08242	Methyltransferase domain
CH46_3123	PF02502	Ribose/Galactose Isomerase
CH46_3123	PF12408	Ribose-5-phosphate isomerase
CH46_3124	PF13226	CH46_3124
CH46_3126	PF07661	CH46_3126
CH46_3126	PF08238	Sel1 repeat
CH46_3127	PF00872	CH46_3127
CH46_3130	PF04101	Glycosyltransferase family 28 C-terminal domain
CH46_3132	PF13506	Glycosyl transferase family 21
CH46_3133	PF01370	NAD dependent epimerase/dehydratase family
CH46_3135	PF00753	Metallo-beta-lactamase superfamily
CH46_3136	PF01370	NAD dependent epimerase/dehydratase family
CH46_3137	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
CH46_3138	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
CH46_3139	PF00425	chorismate binding enzyme
CH46_314	PF15599	CH46_314
CH46_3140	PF05962	HutD
CH46_3141	PF01979	Amidohydrolase family
CH46_3142	PF00392	Bacterial regulatory proteins, gntR family
CH46_3142	PF07702	UTRA domain
CH46_3143	PF01979	Amidohydrolase family
CH46_3144	PF05013	N-formylglutamate amidohydrolase
CH46_3145	PF01695	IstB-like ATP binding protein
CH46_3146	PF00665	Integrase core domain
CH46_3146	PF02796	Helix-turn-helix domain of resolvase
CH46_3147	PF00267	Gram-negative porin
CH46_3148	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
CH46_3149	PF04996	Succinylarginine dihydrolase
CH46_3150	PF00171	Aldehyde dehydrogenase family
CH46_3151	PF04958	Arginine N-succinyltransferase beta subunit
CH46_3152	PF00202	Aminotransferase class-III
CH46_3155	PF00155	Aminotransferase class I and II
CH46_3155	PF00392	Bacterial regulatory proteins, gntR family
CH46_3156	PF00672	HAMP domain
CH46_3156	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_3156	PF07730	Histidine kinase
CH46_3156	PF13675	Type IV pili methyl-accepting chemotaxis transducer N-term
CH46_3157	PF01699	Sodium/calcium exchanger protein
CH46_3158	PF02562	PhoH-like protein
CH46_3160	PF13302	Acetyltransferase (GNAT) domain
CH46_3161	PF13994	CH46_3161
CH46_3162	PF00535	Glycosyl transferase family 2
CH46_3163	PF01522	Polysaccharide deacetylase
CH46_3163	PF14883	Hypothetical glycosyl hydrolase family 13
CH46_3165	PF00557	Metallopeptidase family M24
CH46_3165	PF01321	Creatinase/Prolidase N-terminal domain
CH46_3166	PF03848	Tellurite resistance protein TehB
CH46_3166	PF09313	Domain of unknown function (DUF1971)
CH46_3167	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
CH46_3168	PF00578	AhpC/TSA family
CH46_3169	PF00005	ABC transporter
CH46_317	PF04829	CH46_317
CH46_317	PF13332	CH46_317
CH46_3170	PF02687	CH46_3170
CH46_3170	PF12704	MacB-like periplasmic core domain
CH46_3171	PF02687	CH46_3171
CH46_3172	PF04945	YHS domain
CH46_3172	PF10080	CH46_3172
CH46_3173	PF10634	Fe2+ transport protein
CH46_3174	PF03239	CH46_3174
CH46_3175	PF07690	Major Facilitator Superfamily
CH46_3176	PF04960	Glutaminase
CH46_3177	PF00455	CH46_3177
CH46_3177	PF08220	DeoR-like helix-turn-helix domain
CH46_3178	PF00324	Amino acid permease
CH46_3179	PF00155	Aminotransferase class I and II
CH46_318	PF05594	CH46_318
CH46_318	PF05860	haemagglutination activity domain
CH46_318	PF13018	CH46_318
CH46_3180	PF02508	CH46_3180
CH46_3181	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_3181	PF03466	LysR substrate binding domain
CH46_3182	PF04909	Amidohydrolase
CH46_3183	PF07690	Major Facilitator Superfamily
CH46_3186	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_3186	PF03466	LysR substrate binding domain
CH46_3187	PF03328	HpcH/HpaI aldolase/citrate lyase family
CH46_3188	PF01575	MaoC like domain
CH46_3189	PF02550	Acetyl-CoA hydrolase/transferase N-terminal domain
CH46_3189	PF13336	Acetyl-CoA hydrolase/transferase C-terminal domain
CH46_319	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
CH46_319	PF08479	POTRA domain, ShlB-type
CH46_319	PF17287	CH46_319
CH46_3191	PF00072	Response regulator receiver domain
CH46_3191	PF00196	Bacterial regulatory proteins, luxR family
CH46_3194	PF00419	Fimbrial protein
CH46_3195	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH46_3195	PF02753	Pili assembly chaperone PapD, C-terminal domain
CH46_3196	PF00577	Outer membrane usher protein
CH46_3196	PF13953	PapC C-terminal domain
CH46_3196	PF13954	PapC N-terminal domain
CH46_3197	PF00419	Fimbrial protein
CH46_3198	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH46_3198	PF02753	Pili assembly chaperone PapD, C-terminal domain
CH46_32	PF00589	Phage integrase family
CH46_32	PF13356	Domain of unknown function (DUF4102)
CH46_320	PF00092	von Willebrand factor type A domain
CH46_3200	PF00589	Phage integrase family
CH46_3200	PF13356	Domain of unknown function (DUF4102)
CH46_3201	PF00425	chorismate binding enzyme
CH46_3202	PF07690	Major Facilitator Superfamily
CH46_3203	PF00005	ABC transporter
CH46_3203	PF00664	ABC transporter transmembrane region
CH46_3204	PF00005	ABC transporter
CH46_3204	PF00664	ABC transporter transmembrane region
CH46_3205	PF12833	Helix-turn-helix domain
CH46_3206	PF00501	AMP-binding enzyme
CH46_3206	PF00550	Phosphopantetheine attachment site
CH46_3206	PF00668	Condensation domain
CH46_3206	PF08242	Methyltransferase domain
CH46_3207	PF00109	Beta-ketoacyl synthase, N-terminal domain
CH46_3207	PF00550	Phosphopantetheine attachment site
CH46_3207	PF00668	Condensation domain
CH46_3207	PF00698	Acyl transferase domain
CH46_3207	PF00975	Thioesterase domain
CH46_3207	PF02801	Beta-ketoacyl synthase, C-terminal domain
CH46_3207	PF08242	Methyltransferase domain
CH46_3207	PF08659	KR domain
CH46_3207	PF16197	CH46_3207
CH46_3208	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
CH46_3209	PF00975	Thioesterase domain
CH46_321	PF02342	TerD domain
CH46_3210	PF00501	AMP-binding enzyme
CH46_3210	PF13193	AMP-binding enzyme C-terminal domain
CH46_3211	PF00593	TonB dependent receptor
CH46_3211	PF07715	TonB-dependent Receptor Plug Domain
CH46_3214	PF05930	Prophage CP4-57 regulatory protein (AlpA)
CH46_3216	PF11198	CH46_3216
CH46_3217	PF01258	Prokaryotic dksA/traR C4-type zinc finger
CH46_3218	PF05321	Haemolysin expression modulating protein
CH46_3219	PF01695	IstB-like ATP binding protein
CH46_322	PF00092	von Willebrand factor type A domain
CH46_3220	PF00665	Integrase core domain
CH46_3220	PF02796	Helix-turn-helix domain of resolvase
CH46_3222	PF08402	TOBE domain
CH46_3223	PF00005	ABC transporter
CH46_3224	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_3225	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_3226	PF01547	Bacterial extracellular solute-binding protein
CH46_3227	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
CH46_3228	PF00392	Bacterial regulatory proteins, gntR family
CH46_3228	PF07702	UTRA domain
CH46_323	PF00092	von Willebrand factor type A domain
CH46_323	PF15616	CH46_323
CH46_3234	PF00872	CH46_3234
CH46_3235	PF00872	CH46_3235
CH46_3236	PF13676	TIR domain
CH46_3237	PF14384	CH46_3237
CH46_3238	PF04365	Protein of unknown function (DUF497)
CH46_3239	PF04717	Phage-related baseplate assembly protein
CH46_324	PF13672	Protein phosphatase 2C
CH46_3240	PF04965	Gene 25-like lysozyme
CH46_3242	PF10908	CH46_3242
CH46_3245	PF01527	Transposase
CH46_3246	PF00665	Integrase core domain
CH46_3246	PF13565	CH46_3246
CH46_3247	PF05638	Protein of unknown function (DUF796)
CH46_325	PF00069	Protein kinase domain
CH46_3251	PF03796	DnaB-like helicase C terminal domain
CH46_3256	PF01066	CDP-alcohol phosphatidyltransferase
CH46_3257	PF01541	GIY-YIG catalytic domain
CH46_3257	PF02151	UvrB/uvrC motif
CH46_3257	PF08459	UvrC Helix-hairpin-helix N-terminal
CH46_3257	PF14520	Helix-hairpin-helix domain
CH46_3258	PF00072	Response regulator receiver domain
CH46_3258	PF00196	Bacterial regulatory proteins, luxR family
CH46_3259	PF10769	CH46_3259
CH46_326	PF03729	CH46_326
CH46_3260	PF06942	CH46_3260
CH46_3262	PF13505	Outer membrane protein beta-barrel domain
CH46_3264	PF00324	Amino acid permease
CH46_3265	PF01344	Kelch motif
CH46_3266	PF03358	NADPH-dependent FMN reductase
CH46_3267	PF04261	Dyp-type peroxidase family
CH46_3268	PF09375	Imelysin
CH46_3268	PF13473	Cupredoxin-like domain
CH46_3269	PF03239	CH46_3269
CH46_327	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
CH46_327	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH46_3270	PF00474	Sodium:solute symporter family
CH46_3272	PF00171	Aldehyde dehydrogenase family
CH46_3272	PF01619	Proline dehydrogenase
CH46_3272	PF14850	DNA-binding domain of Proline dehydrogenase
CH46_3275	PF00005	ABC transporter
CH46_3276	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_3277	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH46_3278	PF00291	Pyridoxal-phosphate dependent enzyme
CH46_3279	PF02899	Phage integrase, N-terminal SAM-like domain
CH46_328	PF05175	Methyltransferase small domain
CH46_3280	PF04539	Sigma-70 region 3
CH46_3280	PF04542	Sigma-70 region 2
CH46_3280	PF04545	Sigma-70, region 4
CH46_3281	PF00669	Bacterial flagellin N-terminal helical region
CH46_3281	PF00700	Bacterial flagellin C-terminal helical region
CH46_3282	PF02465	CH46_3282
CH46_3282	PF07195	CH46_3282
CH46_3282	PF07196	Flagellin hook IN motif
CH46_3283	PF02561	Flagellar protein FliS
CH46_3284	PF05400	Flagellar protein FliT
CH46_3285	PF12833	Helix-turn-helix domain
CH46_3287	PF13487	HD domain
CH46_3288	PF00730	HhH-GPD superfamily base excision DNA repair protein
CH46_3289	PF02661	Fic/DOC family
CH46_329	PF03212	Pertactin
CH46_329	PF03797	Autotransporter beta-domain
CH46_3291	PF02049	CH46_3291
CH46_3292	PF01514	Secretory protein of YscJ/FliF family
CH46_3292	PF08345	CH46_3292
CH46_3293	PF01706	FliG C-terminal domain
CH46_3293	PF14841	FliG middle domain
CH46_3293	PF14842	FliG N-terminal domain
CH46_3294	PF02108	CH46_3294
CH46_3295	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CH46_3296	PF02050	Flagellar FliJ protein
CH46_3297	PF02120	Flagellar hook-length control protein FliK
CH46_3298	PF03748	CH46_3298
CH46_3299	PF01052	Surface presentation of antigens (SPOA)
CH46_3299	PF02154	Flagellar motor switch protein FliM
CH46_330	PF01863	Protein of unknown function DUF45
CH46_3300	PF01052	Surface presentation of antigens (SPOA)
CH46_3300	PF16973	CH46_3300
CH46_3301	PF04347	CH46_3301
CH46_3302	PF00813	CH46_3302
CH46_3303	PF01313	CH46_3303
CH46_3304	PF01311	CH46_3304
CH46_3305	PF07927	YcfA-like protein
CH46_3306	PF15919	CH46_3306
CH46_3307	PF00294	pfkB family carbohydrate kinase
CH46_3308	PF02653	CH46_3308
CH46_3309	PF00005	ABC transporter
CH46_331	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
CH46_3310	PF13407	Periplasmic binding protein domain
CH46_3311	PF02653	CH46_3311
CH46_3313	PF00596	Class II Aldolase and Adducin N-terminal domain
CH46_3313	PF13561	Enoyl-(Acyl carrier protein) reductase
CH46_3314	PF04198	Putative sugar-binding domain
CH46_3315	PF00669	Bacterial flagellin N-terminal helical region
CH46_3316	PF00460	Flagella basal body rod protein
CH46_3316	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH46_3317	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
CH46_3317	PF10135	CH46_3317
CH46_3318	PF02119	CH46_3318
CH46_3319	PF02107	CH46_3319
CH46_332	PF00375	Sodium:dicarboxylate symporter family
CH46_3320	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH46_3321	PF00460	Flagella basal body rod protein
CH46_3322	PF00460	Flagella basal body rod protein
CH46_3322	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH46_3322	PF07559	Flagellar basal body protein FlaE
CH46_3323	PF03963	CH46_3323
CH46_3323	PF13860	FlgD Ig-like domain
CH46_3323	PF13861	FlgD Tudor-like domain
CH46_3324	PF00460	Flagella basal body rod protein
CH46_3324	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH46_3325	PF00460	Flagella basal body rod protein
CH46_3326	PF13144	SAF-like
CH46_3327	PF04316	Anti-sigma-28 factor, FlgM
CH46_3328	PF05130	FlgN protein
CH46_3329	PF02369	Bacterial Ig-like domain (group 1)
CH46_3329	PF07979	Intimin C-type lectin domain
CH46_3329	PF09134	Invasin, domain 3
CH46_3329	PF11924	Protein of unknown function (DUF3442)
CH46_3330	PF01797	Transposase IS200 like
CH46_3331	PF11924	Protein of unknown function (DUF3442)
CH46_3332	PF06366	CH46_3332
CH46_3333	PF00771	FHIPEP family
CH46_3334	PF01312	FlhB HrpN YscU SpaS Family
CH46_3336	PF07377	Protein of unknown function (DUF1493)
CH46_3337	PF10709	CH46_3337
CH46_3338	PF05425	CH46_3338
CH46_3339	PF04234	CopC domain
CH46_334	PF01797	Transposase IS200 like
CH46_3340	PF00210	Ferritin-like domain
CH46_3341	PF06440	DNA polymerase III, theta subunit
CH46_3342	PF00561	alpha/beta hydrolase fold
CH46_3343	PF00326	Prolyl oligopeptidase family
CH46_3343	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
CH46_3344	PF13995	YebF-like protein
CH46_3345	PF04266	ASCH domain
CH46_3346	PF07130	YebG protein
CH46_3347	PF00270	DEAD/DEAH box helicase
CH46_3347	PF00271	Helicase conserved C-terminal domain
CH46_3347	PF03880	DbpA RNA binding domain
CH46_3348	PF02222	ATP-grasp domain
CH46_3349	PF03701	CH46_3349
CH46_335	PF10688	CH46_335
CH46_3350	PF00425	chorismate binding enzyme
CH46_3350	PF04715	Anthranilate synthase component I, N terminal region
CH46_3351	PF00293	NUDIX domain
CH46_3352	PF03313	CH46_3352
CH46_3352	PF03315	Serine dehydratase beta chain
CH46_3353	PF01613	Flavin reductase like domain
CH46_3354	PF03241	4-hydroxyphenylacetate 3-hydroxylase C terminal
CH46_3354	PF11794	4-hydroxyphenylacetate 3-hydroxylase N terminal
CH46_3355	PF07690	Major Facilitator Superfamily
CH46_3355	PF11700	CH46_3355
CH46_3356	PF03328	HpcH/HpaI aldolase/citrate lyase family
CH46_3358	PF02962	5-carboxymethyl-2-hydroxymuconate isomerase
CH46_3359	PF02900	Catalytic LigB subunit of aromatic ring-opening dioxygenase
CH46_336	PF04295	CH46_336
CH46_336	PF08666	SAF domain
CH46_3360	PF00171	Aldehyde dehydrogenase family
CH46_3361	PF01557	Fumarylacetoacetate (FAA) hydrolase family
CH46_3362	PF01557	Fumarylacetoacetate (FAA) hydrolase family
CH46_3363	PF01047	MarR family
CH46_3364	PF00571	CBS domain
CH46_3364	PF03471	Transporter associated domain
CH46_3364	PF03741	CH46_3364
CH46_3365	PF03610	PTS system fructose IIA component
CH46_3365	PF03830	PTS system sorbose subfamily IIB component
CH46_3366	PF03609	CH46_3366
CH46_3367	PF03613	CH46_3367
CH46_3368	PF06173	CH46_3368
CH46_3369	PF02659	CH46_3369
CH46_337	PF01232	Mannitol dehydrogenase Rossmann domain
CH46_337	PF08125	Mannitol dehydrogenase C-terminal domain
CH46_3370	PF00593	TonB dependent receptor
CH46_3370	PF07715	TonB-dependent Receptor Plug Domain
CH46_3371	PF00989	PAS fold
CH46_3371	PF00990	GGDEF domain
CH46_3371	PF13426	PAS domain
CH46_3373	PF13847	Methyltransferase domain
CH46_3374	PF02578	Multi-copper polyphenol oxidoreductase laccase
CH46_3375	PF00313	'Cold-shock' DNA-binding domain
CH46_3377	PF07017	Antimicrobial peptide resistance and lipid A acylation protein PagP
CH46_3378	PF00324	Amino acid permease
CH46_3379	PF13269	CH46_3379
CH46_338	PF02614	Glucuronate isomerase
CH46_3380	PF10765	Protein of unknown function (DUF2591)
CH46_3381	PF13974	CH46_3381
CH46_3382	PF13996	CH46_3382
CH46_3383	PF10964	CH46_3383
CH46_3385	PF12833	Helix-turn-helix domain
CH46_3387	PF00005	ABC transporter
CH46_3387	PF00664	ABC transporter transmembrane region
CH46_3388	PF01163	RIO1 family
CH46_3389	PF03795	YCII-related domain
CH46_339	PF07690	Major Facilitator Superfamily
CH46_3390	PF06167	Glucose-regulated metallo-peptidase M90
CH46_3393	PF01695	IstB-like ATP binding protein
CH46_3394	PF00665	Integrase core domain
CH46_3394	PF02796	Helix-turn-helix domain of resolvase
CH46_3395	PF00356	Bacterial regulatory proteins, lacI family
CH46_3395	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
CH46_3396	PF00872	CH46_3396
CH46_3397	PF07883	Cupin domain
CH46_3398	PF04962	KduI/IolB family
CH46_3399	PF13561	Enoyl-(Acyl carrier protein) reductase
CH46_34	PF05016	Plasmid stabilisation system protein
CH46_340	PF00392	Bacterial regulatory proteins, gntR family
CH46_340	PF07729	FCD domain
CH46_3400	PF06917	Periplasmic pectate lyase
CH46_3401	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_3402	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_3403	PF00005	ABC transporter
CH46_3404	PF01547	Bacterial extracellular solute-binding protein
CH46_3405	PF06178	Oligogalacturonate-specific porin protein (KdgM)
CH46_3406	PF04307	CH46_3406
CH46_3407	PF00375	Sodium:dicarboxylate symporter family
CH46_3408	PF01471	Putative peptidoglycan binding domain
CH46_3408	PF01510	N-acetylmuramoyl-L-alanine amidase
CH46_3409	PF01614	Bacterial transcriptional regulator
CH46_3409	PF09339	IclR helix-turn-helix domain
CH46_3410	PF14583	Oligogalacturonate lyase
CH46_3411	PF07690	Major Facilitator Superfamily
CH46_3412	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH46_3412	PF02753	Pili assembly chaperone PapD, C-terminal domain
CH46_3413	PF00419	Fimbrial protein
CH46_3414	PF00577	Outer membrane usher protein
CH46_3414	PF13953	PapC C-terminal domain
CH46_3414	PF13954	PapC N-terminal domain
CH46_3415	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH46_3415	PF02753	Pili assembly chaperone PapD, C-terminal domain
CH46_3416	PF16970	CH46_3416
CH46_3417	PF01435	Peptidase family M48
CH46_3419	PF00595	PDZ domain (Also known as DHR or GLGF)
CH46_3419	PF03572	Peptidase family S41
CH46_3419	PF11818	CH46_3419
CH46_342	PF09335	CH46_342
CH46_3420	PF04352	ProQ/FINO family
CH46_3420	PF17516	CH46_3420
CH46_3421	PF13185	GAF domain
CH46_3422	PF04403	CH46_3422
CH46_3423	PF02470	CH46_3423
CH46_3424	PF05229	CH46_3424
CH46_3425	PF05229	CH46_3425
CH46_3426	PF05229	CH46_3426
CH46_3427	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH46_3428	PF00577	Outer membrane usher protein
CH46_3428	PF13953	PapC C-terminal domain
CH46_3429	PF05229	CH46_3429
CH46_343	PF13721	SecD export protein N-terminal TM region
CH46_3430	PF07351	CH46_3430
CH46_3431	PF04266	ASCH domain
CH46_3432	PF00665	Integrase core domain
CH46_3432	PF02796	Helix-turn-helix domain of resolvase
CH46_3433	PF01695	IstB-like ATP binding protein
CH46_3436	PF01734	Patatin-like phospholipase
CH46_3439	PF00842	Alanine racemase, C-terminal domain
CH46_3439	PF01168	Alanine racemase, N-terminal domain
CH46_344	PF06476	CH46_344
CH46_3442	PF03895	YadA-like C-terminal region
CH46_3442	PF05662	Coiled stalk of trimeric autotransporter adhesin
CH46_3443	PF05658	Head domain of trimeric autotransporter adhesin
CH46_3443	PF05662	Coiled stalk of trimeric autotransporter adhesin
CH46_3444	PF01510	N-acetylmuramoyl-L-alanine amidase
CH46_3445	PF04344	Chemotaxis phosphatase, CheZ
CH46_3446	PF00072	Response regulator receiver domain
CH46_3447	PF00072	Response regulator receiver domain
CH46_3447	PF01339	CheB methylesterase
CH46_3448	PF01739	CheR methyltransferase, SAM binding domain
CH46_3448	PF03705	CheR methyltransferase, all-alpha domain
CH46_345	PF05957	CH46_345
CH46_3451	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CH46_3451	PF00672	HAMP domain
CH46_3451	PF02203	Tar ligand binding domain homologue
CH46_3453	PF10101	CH46_3453
CH46_3454	PF03797	Autotransporter beta-domain
CH46_3455	PF08348	CH46_3455
CH46_3455	PF13309	CH46_3455
CH46_3456	PF01261	Xylose isomerase-like TIM barrel
CH46_3457	PF01042	Endoribonuclease L-PSP
CH46_3458	PF07690	Major Facilitator Superfamily
CH46_3459	PF01584	CheW-like domain
CH46_346	PF07332	CH46_346
CH46_3460	PF01584	CheW-like domain
CH46_3460	PF01627	Hpt domain
CH46_3460	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_3460	PF02895	Signal transducing histidine kinase, homodimeric domain
CH46_3460	PF09078	CheY binding
CH46_3461	PF00691	OmpA family
CH46_3461	PF13677	CH46_3461
CH46_3462	PF01618	CH46_3462
CH46_3463	PF05280	Flagellar transcriptional activator (FlhC)
CH46_3464	PF05247	Flagellar transcriptional activator (FlhD)
CH46_3465	PF00122	E1-E2 ATPase
CH46_3465	PF00689	Cation transporting ATPase, C-terminus
CH46_3465	PF00690	Cation transporter/ATPase, N-terminus
CH46_3465	PF00702	haloacid dehalogenase-like hydrolase
CH46_3466	PF02308	CH46_3466
CH46_3467	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CH46_3467	PF02203	Tar ligand binding domain homologue
CH46_3468	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CH46_3469	PF10781	CH46_3469
CH46_347	PF13997	CH46_347
CH46_3470	PF00313	'Cold-shock' DNA-binding domain
CH46_3471	PF00703	Glycosyl hydrolases family 2
CH46_3471	PF02836	Glycosyl hydrolases family 2, TIM barrel domain
CH46_3471	PF02837	Glycosyl hydrolases family 2, sugar binding domain
CH46_3471	PF02929	Beta galactosidase small chain
CH46_3471	PF16353	CH46_3471
CH46_3472	PF00107	Zinc-binding dehydrogenase
CH46_3472	PF08240	Alcohol dehydrogenase GroES-like domain
CH46_3473	PF10777	CH46_3473
CH46_3474	PF01037	AsnC family
CH46_3474	PF13412	Winged helix-turn-helix DNA-binding
CH46_3475	PF11004	CH46_3475
CH46_3476	PF14001	CH46_3476
CH46_3477	PF00328	Histidine phosphatase superfamily (branch 2)
CH46_3479	PF01638	HxlR-like helix-turn-helix
CH46_348	PF07681	CH46_348
CH46_3480	PF05368	NmrA-like family
CH46_3481	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CH46_3481	PF08447	PAS fold
CH46_3483	PF00356	Bacterial regulatory proteins, lacI family
CH46_3483	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
CH46_3484	PF00180	Isocitrate/isopropylmalate dehydrogenase
CH46_3485	PF00849	RNA pseudouridylate synthase
CH46_3486	PF00293	NUDIX domain
CH46_3487	PF03054	tRNA methyl transferase
CH46_3488	PF04356	Protein of unknown function (DUF489)
CH46_3489	PF00206	Lyase
CH46_3489	PF08328	Adenylosuccinate lyase C-terminal
CH46_3490	PF13505	Outer membrane protein beta-barrel domain
CH46_3491	PF00072	Response regulator receiver domain
CH46_3491	PF00486	Transcriptional regulatory protein, C terminal
CH46_3492	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_3492	PF08918	PhoQ Sensor
CH46_3493	PF08007	Cupin superfamily protein
CH46_3494	PF01546	Peptidase family M20/M25/M40
CH46_3494	PF07687	Peptidase dimerisation domain
CH46_3495	PF02146	Sir2 family
CH46_3496	PF00480	ROK family
CH46_3497	PF02687	CH46_3497
CH46_3497	PF12704	MacB-like periplasmic core domain
CH46_3498	PF00005	ABC transporter
CH46_3499	PF02687	CH46_3499
CH46_3499	PF12704	MacB-like periplasmic core domain
CH46_35	PF01381	Helix-turn-helix
CH46_350	PF00665	Integrase core domain
CH46_350	PF02796	Helix-turn-helix domain of resolvase
CH46_3500	PF00270	DEAD/DEAH box helicase
CH46_3500	PF00271	Helicase conserved C-terminal domain
CH46_3500	PF02559	CarD-like/TRCF domain
CH46_3500	PF03461	TRCF domain
CH46_3501	PF05433	CH46_3501
CH46_3502	PF00665	Integrase core domain
CH46_3502	PF02796	Helix-turn-helix domain of resolvase
CH46_3503	PF01695	IstB-like ATP binding protein
CH46_3504	PF00872	CH46_3504
CH46_3507	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH46_3508	PF05728	Uncharacterised protein family (UPF0227)
CH46_3509	PF00933	Glycosyl hydrolase family 3 N terminal domain
CH46_351	PF01695	IstB-like ATP binding protein
CH46_3510	PF01636	Phosphotransferase enzyme family
CH46_3511	PF13036	Protein of unknown function (DUF3897)
CH46_3512	PF07233	Protein of unknown function (DUF1425)
CH46_3513	PF01230	HIT domain
CH46_3514	PF08501	Shikimate dehydrogenase substrate binding domain
CH46_3515	PF01797	Transposase IS200 like
CH46_3516	PF00367	phosphotransferase system, EIIB
CH46_3516	PF02378	Phosphotransferase system, EIIC
CH46_3517	PF01026	TatD related DNase
CH46_3518	PF09115	DNA polymerase III, delta subunit, C terminal
CH46_3518	PF13177	DNA polymerase III, delta subunit
CH46_3519	PF02223	Thymidylate kinase
CH46_352	PF00293	NUDIX domain
CH46_3520	PF02618	YceG-like family
CH46_3521	PF01063	Aminotransferase class IV
CH46_3522	PF01797	Transposase IS200 like
CH46_3523	PF00109	Beta-ketoacyl synthase, N-terminal domain
CH46_3523	PF02801	Beta-ketoacyl synthase, C-terminal domain
CH46_3524	PF00550	Phosphopantetheine attachment site
CH46_3525	PF13561	Enoyl-(Acyl carrier protein) reductase
CH46_3526	PF00698	Acyl transferase domain
CH46_3527	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
CH46_3527	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
CH46_3528	PF02504	Fatty acid synthesis protein
CH46_3529	PF01783	Ribosomal L32p protein family
CH46_353	PF01043	SecA preprotein cross-linking domain
CH46_353	PF02810	SEC-C motif
CH46_353	PF07516	SecA Wing and Scaffold domain
CH46_353	PF07517	SecA DEAD-like domain
CH46_3530	PF02620	CH46_3530
CH46_3531	PF02545	Maf-like protein
CH46_3532	PF01797	Transposase IS200 like
CH46_3533	PF00849	RNA pseudouridylate synthase
CH46_3533	PF01479	S4 domain
CH46_3534	PF00575	S1 RNA binding domain
CH46_3534	PF10150	Ribonuclease E/G family
CH46_3534	PF12111	Polyribonucleotide phosphorylase C terminal
CH46_3535	PF00872	CH46_3535
CH46_3536	PF03992	Antibiotic biosynthesis monooxygenase
CH46_3537	PF01979	Amidohydrolase family
CH46_3538	PF06183	DinI-like family
CH46_3539	PF00872	CH46_3539
CH46_354	PF06558	CH46_354
CH46_3540	PF13991	CH46_3540
CH46_3541	PF01306	LacY proton/sugar symporter
CH46_3542	PF02065	Melibiase
CH46_3542	PF16875	CH46_3542
CH46_3545	PF01648	4'-phosphopantetheinyl transferase superfamily
CH46_3546	PF03480	Bacterial extracellular solute-binding protein, family 7
CH46_3547	PF04290	CH46_3547
CH46_3548	PF06808	CH46_3548
CH46_3549	PF00072	Response regulator receiver domain
CH46_3549	PF00196	Bacterial regulatory proteins, luxR family
CH46_355	PF05258	CH46_355
CH46_3551	PF09831	CH46_3551
CH46_3553	PF01522	Polysaccharide deacetylase
CH46_3554	PF07690	Major Facilitator Superfamily
CH46_3555	PF01554	MatE
CH46_3556	PF00764	Arginosuccinate synthase
CH46_3557	PF01070	FMN-dependent dehydrogenase
CH46_3559	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
CH46_3559	PF13378	Enolase C-terminal domain-like
CH46_356	PF03331	UDP-3-O-acyl N-acetylglycosamine deacetylase
CH46_3560	PF01557	Fumarylacetoacetate (FAA) hydrolase family
CH46_3561	PF13561	Enoyl-(Acyl carrier protein) reductase
CH46_3562	PF04134	CH46_3562
CH46_3563	PF07690	Major Facilitator Superfamily
CH46_3564	PF00872	CH46_3564
CH46_3565	PF02369	Bacterial Ig-like domain (group 1)
CH46_3565	PF09134	Invasin, domain 3
CH46_3565	PF11924	Protein of unknown function (DUF3442)
CH46_3566	PF04363	CH46_3566
CH46_3567	PF07993	Male sterility protein
CH46_3568	PF00929	Exonuclease
CH46_3568	PF08411	Exonuclease C-terminal
CH46_3569	PF13520	Amino acid permease
CH46_357	PF00091	Tubulin/FtsZ family, GTPase domain
CH46_357	PF12327	FtsZ family, C-terminal domain
CH46_3571	PF00465	Iron-containing alcohol dehydrogenase
CH46_3572	PF00005	ABC transporter
CH46_3573	PF00005	ABC transporter
CH46_3574	PF02653	CH46_3574
CH46_3575	PF16695	CH46_3575
CH46_3576	PF01370	NAD dependent epimerase/dehydratase family
CH46_3577	PF01634	ATP phosphoribosyltransferase
CH46_3577	PF08029	HisG, C-terminal domain
CH46_3578	PF00815	Histidinol dehydrogenase
CH46_3579	PF00155	Aminotransferase class I and II
CH46_358	PF02491	SHS2 domain inserted in FTSA
CH46_358	PF14450	Cell division protein FtsA
CH46_3580	PF00475	Imidazoleglycerol-phosphate dehydratase
CH46_3580	PF13242	HAD-hyrolase-like
CH46_3581	PF00117	Glutamine amidotransferase class-I
CH46_3582	PF00977	Histidine biosynthesis protein
CH46_3583	PF00977	Histidine biosynthesis protein
CH46_3584	PF01502	Phosphoribosyl-AMP cyclohydrolase
CH46_3584	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
CH46_3585	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
CH46_3585	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
CH46_3586	PF00483	Nucleotidyl transferase
CH46_3587	PF00483	Nucleotidyl transferase
CH46_3588	PF04183	IucA / IucC family
CH46_3588	PF06276	Ferric iron reductase FhuF-like transporter
CH46_3589	PF00593	TonB dependent receptor
CH46_3589	PF07715	TonB-dependent Receptor Plug Domain
CH46_359	PF03799	Cell division protein FtsQ
CH46_359	PF08478	POTRA domain, FtsQ-type
CH46_3590	PF01497	Periplasmic binding protein
CH46_3591	PF01032	FecCD transport family
CH46_3592	PF01032	FecCD transport family
CH46_3593	PF00005	ABC transporter
CH46_3594	PF04183	IucA / IucC family
CH46_3594	PF06276	Ferric iron reductase FhuF-like transporter
CH46_3595	PF13523	Acetyltransferase (GNAT) domain
CH46_3596	PF13434	L-lysine 6-monooxygenase (NADPH-requiring)
CH46_3597	PF00282	Pyridoxal-dependent decarboxylase conserved domain
CH46_3598	PF06276	Ferric iron reductase FhuF-like transporter
CH46_3598	PF11575	CH46_3598
CH46_3599	PF00571	CBS domain
CH46_3599	PF03471	Transporter associated domain
CH46_3599	PF03741	CH46_3599
CH46_36	PF15723	CH46_36
CH46_360	PF01820	D-ala D-ala ligase N-terminus
CH46_360	PF07478	D-ala D-ala ligase C-terminus
CH46_3600	PF05170	CH46_3600
CH46_3600	PF13502	CH46_3600
CH46_3601	PF00692	dUTPase
CH46_3602	PF00485	Phosphoribulokinase / Uridine kinase family
CH46_3603	PF10609	ParA/MinD ATPase like
CH46_3604	PF01588	Putative tRNA binding domain
CH46_3604	PF09334	tRNA synthetases class I (M)
CH46_3605	PF01797	Transposase IS200 like
CH46_3606	PF00665	Integrase core domain
CH46_3606	PF02796	Helix-turn-helix domain of resolvase
CH46_3607	PF01695	IstB-like ATP binding protein
CH46_3609	PF13407	Periplasmic binding protein domain
CH46_361	PF01225	Mur ligase family, catalytic domain
CH46_361	PF02875	Mur ligase family, glutamate ligase domain
CH46_361	PF08245	Mur ligase middle domain
CH46_3610	PF08309	CH46_3610
CH46_3611	PF07690	Major Facilitator Superfamily
CH46_3612	PF03788	CH46_3612
CH46_3613	PF04172	CH46_3613
CH46_3614	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
CH46_3614	PF08211	Cytidine and deoxycytidylate deaminase zinc-binding region
CH46_3615	PF00390	Malic enzyme, N-terminal domain
CH46_3615	PF03949	Malic enzyme, NAD binding domain
CH46_3616	PF02698	DUF218 domain
CH46_3617	PF02653	CH46_3617
CH46_3618	PF00005	ABC transporter
CH46_3619	PF13407	Periplasmic binding protein domain
CH46_362	PF03033	Glycosyltransferase family 28 N-terminal domain
CH46_362	PF04101	Glycosyltransferase family 28 C-terminal domain
CH46_3620	PF04235	CH46_3620
CH46_3621	PF01227	GTP cyclohydrolase I
CH46_3622	PF06779	CH46_3622
CH46_3623	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_3623	PF03466	LysR substrate binding domain
CH46_3624	PF00107	Zinc-binding dehydrogenase
CH46_3624	PF08240	Alcohol dehydrogenase GroES-like domain
CH46_3625	PF00756	Putative esterase
CH46_3628	PF13437	HlyD family secretion protein
CH46_3629	PF00005	ABC transporter
CH46_363	PF01098	CH46_363
CH46_3630	PF04055	Radical SAM superfamily
CH46_3631	PF00994	Probable molybdopterin binding domain
CH46_3631	PF03453	MoeA N-terminal region (domain I and II)
CH46_3631	PF03454	MoeA C-terminal region (domain IV)
CH46_3632	PF00899	ThiF family
CH46_3633	PF00872	CH46_3633
CH46_3634	PF16809	CH46_3634
CH46_3635	PF00005	ABC transporter
CH46_3635	PF12848	ABC transporter
CH46_3636	PF16809	CH46_3636
CH46_3637	PF06812	CH46_3637
CH46_3637	PF12486	CH46_3637
CH46_3638	PF04965	Gene 25-like lysozyme
CH46_3639	PF12790	Type VI secretion lipoprotein
CH46_364	PF02875	Mur ligase family, glutamate ligase domain
CH46_364	PF08245	Mur ligase middle domain
CH46_3640	PF06996	CH46_3640
CH46_3641	PF05947	CH46_3641
CH46_3643	PF05488	PAAR motif
CH46_3643	PF15607	CH46_3643
CH46_3644	PF06812	CH46_3644
CH46_3644	PF16989	CH46_3644
CH46_3645	PF06744	CH46_3645
CH46_3645	PF06761	CH46_3645
CH46_3648	PF01551	Peptidase family M23
CH46_365	PF00953	Glycosyl transferase family 4
CH46_365	PF10555	Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
CH46_3650	PF10106	CH46_3650
CH46_3652	PF01551	Peptidase family M23
CH46_3653	PF05954	Phage late control gene D protein (GPD)
CH46_3653	PF10106	CH46_3653
CH46_3653	PF13296	CH46_3653
CH46_3654	PF00004	ATPase family associated with various cellular activities (AAA)
CH46_3654	PF07724	AAA domain (Cdc48 subfamily)
CH46_3654	PF10431	C-terminal, D2-small domain, of ClpB protein
CH46_3655	PF05638	Protein of unknown function (DUF796)
CH46_3656	PF00691	OmpA family
CH46_3657	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
CH46_3658	PF05936	CH46_3658
CH46_3659	PF05943	CH46_3659
CH46_366	PF01225	Mur ligase family, catalytic domain
CH46_366	PF02875	Mur ligase family, glutamate ligase domain
CH46_366	PF08245	Mur ligase middle domain
CH46_3660	PF05591	CH46_3660
CH46_3662	PF00698	Acyl transferase domain
CH46_3663	PF00550	Phosphopantetheine attachment site
CH46_3664	PF13924	CH46_3664
CH46_3665	PF13561	Enoyl-(Acyl carrier protein) reductase
CH46_3666	PF00378	Enoyl-CoA hydratase/isomerase family
CH46_3667	PF00378	Enoyl-CoA hydratase/isomerase family
CH46_3668	PF01154	Hydroxymethylglutaryl-coenzyme A synthase N terminal
CH46_3668	PF08540	Hydroxymethylglutaryl-coenzyme A synthase C terminal
CH46_3669	PF13561	Enoyl-(Acyl carrier protein) reductase
CH46_367	PF01225	Mur ligase family, catalytic domain
CH46_367	PF02875	Mur ligase family, glutamate ligase domain
CH46_367	PF08245	Mur ligase middle domain
CH46_3670	PF00109	Beta-ketoacyl synthase, N-terminal domain
CH46_3670	PF02801	Beta-ketoacyl synthase, C-terminal domain
CH46_3671	PF07977	FabA-like domain
CH46_3673	PF13561	Enoyl-(Acyl carrier protein) reductase
CH46_3674	PF01565	FAD binding domain
CH46_3674	PF13480	Acetyltransferase (GNAT) domain
CH46_3678	PF13610	CH46_3678
CH46_368	PF00905	Penicillin binding protein transpeptidase domain
CH46_368	PF03717	Penicillin-binding Protein dimerisation domain
CH46_3680	PF04358	DsrC like protein
CH46_3681	PF00708	Acylphosphatase
CH46_3682	PF10672	S-adenosylmethionine-dependent methyltransferase
CH46_3683	PF08755	Hemimethylated DNA-binding protein YccV like
CH46_3684	PF13380	CoA binding domain
CH46_3685	PF09829	CH46_3685
CH46_3686	PF02142	MGS-like domain
CH46_3687	PF00580	UvrD/REP helicase N-terminal domain
CH46_3687	PF12462	CH46_3687
CH46_3687	PF13361	UvrD-like helicase C-terminal domain
CH46_3688	PF03733	CH46_3688
CH46_3689	PF12805	CH46_3689
CH46_3689	PF13515	CH46_3689
CH46_369	PF04999	CH46_369
CH46_3690	PF04993	TfoX N-terminal domain
CH46_3690	PF04994	TfoX C-terminal domain
CH46_3691	PF03846	Cell division inhibitor SulA
CH46_3692	PF00691	OmpA family
CH46_3692	PF01389	OmpA-like transmembrane domain
CH46_3693	PF01797	Transposase IS200 like
CH46_3694	PF06303	Organiser of macrodomain of Terminus of chromosome
CH46_3694	PF17414	CH46_3694
CH46_3695	PF05362	Lon protease (S16) C-terminal proteolytic domain
CH46_3695	PF13654	AAA domain
CH46_3696	PF07977	FabA-like domain
CH46_3698	PF00109	Beta-ketoacyl synthase, N-terminal domain
CH46_3699	PF00665	Integrase core domain
CH46_3699	PF02796	Helix-turn-helix domain of resolvase
CH46_37	PF15731	CH46_37
CH46_370	PF01795	MraW methylase family
CH46_3701	PF01695	IstB-like ATP binding protein
CH46_3702	PF01695	IstB-like ATP binding protein
CH46_3703	PF00109	Beta-ketoacyl synthase, N-terminal domain
CH46_3703	PF02801	Beta-ketoacyl synthase, C-terminal domain
CH46_3704	PF01797	Transposase IS200 like
CH46_3705	PF03886	Protein of unknown function (DUF330)
CH46_3706	PF02470	CH46_3706
CH46_3707	PF04403	CH46_3707
CH46_3708	PF00005	ABC transporter
CH46_3708	PF12848	ABC transporter
CH46_3708	PF16326	CH46_3708
CH46_3709	PF01170	Putative RNA methylase family UPF0020
CH46_3709	PF02926	THUMP domain
CH46_3709	PF10672	S-adenosylmethionine-dependent methyltransferase
CH46_371	PF02381	MraZ protein
CH46_3710	PF00111	2Fe-2S iron-sulfur cluster binding domain
CH46_3710	PF03473	MOSC domain
CH46_3710	PF03476	MOSC N-terminal beta barrel domain
CH46_3711	PF07126	CH46_3711
CH46_3712	PF01180	Dihydroorotate dehydrogenase
CH46_3713	PF01433	Peptidase family M1
CH46_3713	PF11940	Domain of unknown function (DUF3458)
CH46_3713	PF17432	CH46_3713
CH46_3714	PF04095	Nicotinate phosphoribosyltransferase (NAPRTase) family
CH46_3715	PF00152	tRNA synthetases class II (D, K and N)
CH46_3715	PF01336	OB-fold nucleic acid binding domain
CH46_3716	PF00267	Gram-negative porin
CH46_3717	PF00155	Aminotransferase class I and II
CH46_3718	PF00753	Metallo-beta-lactamase superfamily
CH46_3719	PF05951	CH46_3719
CH46_372	PF06610	CH46_372
CH46_3720	PF01471	Putative peptidoglycan binding domain
CH46_3720	PF03734	L,D-transpeptidase catalytic domain
CH46_3721	PF01797	Transposase IS200 like
CH46_3722	PF04310	MukB N-terminal
CH46_3722	PF13558	Putative exonuclease SbcCD, C subunit
CH46_3722	PF16330	CH46_3722
CH46_3723	PF04288	MukE-like family
CH46_3724	PF03882	KicB killing factor
CH46_3724	PF17192	CH46_3724
CH46_3724	PF17193	CH46_3724
CH46_3725	PF13847	Methyltransferase domain
CH46_3726	PF03881	Fructosamine kinase
CH46_3727	PF02348	Cytidylyltransferase
CH46_3728	PF03966	Trm112p-like protein
CH46_3729	PF00313	'Cold-shock' DNA-binding domain
CH46_373	PF00356	Bacterial regulatory proteins, lacI family
CH46_373	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
CH46_3730	PF07063	Domain of unknown function (DUF1338)
CH46_3731	PF02606	Tetraacyldisaccharide-1-P 4'-kinase
CH46_3732	PF00005	ABC transporter
CH46_3732	PF00664	ABC transporter transmembrane region
CH46_3733	PF00753	Metallo-beta-lactamase superfamily
CH46_3733	PF03772	CH46_3733
CH46_3733	PF13567	CH46_3733
CH46_3734	PF00216	Bacterial DNA-binding protein
CH46_3736	PF00575	S1 RNA binding domain
CH46_3737	PF02224	Cytidylate kinase
CH46_3738	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
CH46_3739	PF00266	Aminotransferase class-V
CH46_374	PF01797	Transposase IS200 like
CH46_3740	PF03895	YadA-like C-terminal region
CH46_3741	PF03895	YadA-like C-terminal region
CH46_3742	PF00710	Asparaginase
CH46_3743	PF02624	YcaO-like family
CH46_3744	PF01226	Formate/nitrite transporter
CH46_3745	PF01228	Glycine radical
CH46_3745	PF02901	Pyruvate formate lyase
CH46_3746	PF01755	CH46_3746
CH46_3747	PF04055	Radical SAM superfamily
CH46_3747	PF13353	4Fe-4S single cluster domain
CH46_3748	PF07690	Major Facilitator Superfamily
CH46_3749	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
CH46_3749	PF02403	Seryl-tRNA synthetase N-terminal domain
CH46_375	PF01842	ACT domain
CH46_375	PF10369	Small subunit of acetolactate synthase
CH46_3750	PF00004	ATPase family associated with various cellular activities (AAA)
CH46_3750	PF12002	MgsA AAA+ ATPase C terminal
CH46_3750	PF16193	CH46_3750
CH46_3752	PF03548	Outer membrane lipoprotein carrier protein LolA
CH46_3753	PF01580	FtsK/SpoIIIE family
CH46_3753	PF09397	Ftsk gamma domain
CH46_3753	PF13491	CH46_3753
CH46_3754	PF01037	AsnC family
CH46_3754	PF13412	Winged helix-turn-helix DNA-binding
CH46_3755	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH46_3756	PF00005	ABC transporter
CH46_3756	PF00664	ABC transporter transmembrane region
CH46_3757	PF00005	ABC transporter
CH46_3757	PF00664	ABC transporter transmembrane region
CH46_3758	PF03588	Leucyl/phenylalanyl-tRNA protein transferase
CH46_3759	PF01176	Translation initiation factor 1A / IF-1
CH46_376	PF00205	Thiamine pyrophosphate enzyme, central domain
CH46_376	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CH46_376	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
CH46_3760	PF01797	Transposase IS200 like
CH46_3761	PF00004	ATPase family associated with various cellular activities (AAA)
CH46_3761	PF02861	Clp amino terminal domain
CH46_3761	PF07724	AAA domain (Cdc48 subfamily)
CH46_3761	PF10431	C-terminal, D2-small domain, of ClpB protein
CH46_3762	PF02617	ATP-dependent Clp protease adaptor protein ClpS
CH46_3763	PF00313	'Cold-shock' DNA-binding domain
CH46_3764	PF00005	ABC transporter
CH46_3764	PF02687	CH46_3764
CH46_3764	PF12704	MacB-like periplasmic core domain
CH46_3765	PF16576	CH46_3765
CH46_3766	PF04393	CH46_3766
CH46_3767	PF11398	Protein of unknown function (DUF2813)
CH46_3768	PF03956	CH46_3768
CH46_3769	PF03063	Prismane/CO dehydrogenase family
CH46_377	PF00501	AMP-binding enzyme
CH46_3770	PF00111	2Fe-2S iron-sulfur cluster binding domain
CH46_3770	PF00175	Oxidoreductase NAD-binding domain
CH46_3770	PF00970	Oxidoreductase FAD-binding domain
CH46_3771	PF00205	Thiamine pyrophosphate enzyme, central domain
CH46_3771	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CH46_3771	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
CH46_3772	PF01212	Beta-eliminating lyase
CH46_3773	PF11066	CH46_3773
CH46_3773	PF13460	NADH(P)-binding
CH46_3774	PF01370	NAD dependent epimerase/dehydratase family
CH46_3775	PF12883	Protein of unknown function (DUF3828)
CH46_3776	PF01817	Chorismate mutase type II
CH46_3777	PF00005	ABC transporter
CH46_3778	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH46_3779	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_378	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_378	PF03466	LysR substrate binding domain
CH46_3780	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_3781	PF00892	EamA-like transporter family
CH46_3782	PF10100	CH46_3782
CH46_3783	PF03059	Nicotianamine synthase protein
CH46_3784	PF00005	ABC transporter
CH46_3785	PF01032	FecCD transport family
CH46_3787	PF01497	Periplasmic binding protein
CH46_3788	PF01145	SPFH domain / Band 7 family
CH46_3790	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH46_3791	PF01695	IstB-like ATP binding protein
CH46_3792	PF00665	Integrase core domain
CH46_3792	PF02796	Helix-turn-helix domain of resolvase
CH46_3793	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH46_3794	PF05958	tRNA (Uracil-5-)-methyltransferase
CH46_3795	PF10767	CH46_3795
CH46_3796	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_3797	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_3798	PF00005	ABC transporter
CH46_3798	PF08402	TOBE domain
CH46_3799	PF13416	Bacterial extracellular solute-binding protein
CH46_38	PF03288	Poxvirus D5 protein-like
CH46_38	PF08273	Zinc-binding domain of primase-helicase
CH46_38	PF08706	CH46_38
CH46_38	PF13362	Toprim domain
CH46_380	PF01797	Transposase IS200 like
CH46_3800	PF10722	Putative bacterial sensory transduction regulator
CH46_3801	PF07214	CH46_3801
CH46_3802	PF00462	Glutaredoxin
CH46_3803	PF02080	TrkA-C domain
CH46_3803	PF06826	CH46_3803
CH46_3804	PF01569	PAP2 superfamily
CH46_3805	PF01569	PAP2 superfamily
CH46_3806	PF01791	DeoC/LacD family aldolase
CH46_3807	PF00455	CH46_3807
CH46_3807	PF08220	DeoR-like helix-turn-helix domain
CH46_3808	PF03222	Tryptophan/tyrosine permease family
CH46_3809	PF00768	D-alanyl-D-alanine carboxypeptidase
CH46_3809	PF07943	Penicillin-binding protein 5, C-terminal domain
CH46_381	PF00682	HMGL-like
CH46_381	PF08502	LeuA allosteric (dimerisation) domain
CH46_3810	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_3811	PF00005	ABC transporter
CH46_3811	PF09383	NIL domain
CH46_3812	PF03180	NLPA lipoprotein
CH46_3813	PF03171	2OG-Fe(II) oxygenase superfamily
CH46_3813	PF14226	non-haem dioxygenase in morphine synthesis N-terminal
CH46_3814	PF12710	haloacid dehalogenase-like hydrolase
CH46_3815	PF00043	Glutathione S-transferase, C-terminal domain
CH46_3815	PF13417	Glutathione S-transferase, N-terminal domain
CH46_3816	PF00593	TonB dependent receptor
CH46_3816	PF07715	TonB-dependent Receptor Plug Domain
CH46_3817	PF00005	ABC transporter
CH46_3818	PF01032	FecCD transport family
CH46_3819	PF01497	Periplasmic binding protein
CH46_382	PF00180	Isocitrate/isopropylmalate dehydrogenase
CH46_3820	PF00324	Amino acid permease
CH46_3822	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_3822	PF03466	LysR substrate binding domain
CH46_3823	PF03601	CH46_3823
CH46_3824	PF01261	Xylose isomerase-like TIM barrel
CH46_3825	PF00577	Outer membrane usher protein
CH46_3825	PF13953	PapC C-terminal domain
CH46_3825	PF13954	PapC N-terminal domain
CH46_3826	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH46_3826	PF02753	Pili assembly chaperone PapD, C-terminal domain
CH46_3828	PF17550	CH46_3828
CH46_3829	PF00486	Transcriptional regulatory protein, C terminal
CH46_383	PF00330	Aconitase family (aconitate hydratase)
CH46_3830	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
CH46_3830	PF02378	Phosphotransferase system, EIIC
CH46_3831	PF00294	pfkB family carbohydrate kinase
CH46_3832	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
CH46_3832	PF00381	PTS HPr component phosphorylation site
CH46_3833	PF00293	NUDIX domain
CH46_3834	PF02653	CH46_3834
CH46_3835	PF00005	ABC transporter
CH46_3836	PF13407	Periplasmic binding protein domain
CH46_3837	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
CH46_3838	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
CH46_3838	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
CH46_3839	PF00171	Aldehyde dehydrogenase family
CH46_384	PF00694	Aconitase C-terminal domain
CH46_3840	PF01557	Fumarylacetoacetate (FAA) hydrolase family
CH46_3841	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
CH46_3841	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
CH46_3842	PF13561	Enoyl-(Acyl carrier protein) reductase
CH46_3843	PF03692	CH46_3843
CH46_3844	PF03222	Tryptophan/tyrosine permease family
CH46_3845	PF01132	Elongation factor P (EF-P) OB domain
CH46_3845	PF08207	Elongation factor P (EF-P) KOW-like domain
CH46_3845	PF09285	Elongation factor P, C-terminal
CH46_3846	PF03786	D-mannonate dehydratase (UxuA)
CH46_3847	PF01232	Mannitol dehydrogenase Rossmann domain
CH46_3847	PF08125	Mannitol dehydrogenase C-terminal domain
CH46_3848	PF00392	Bacterial regulatory proteins, gntR family
CH46_3848	PF07729	FCD domain
CH46_3850	PF02492	CobW/HypB/UreG, nucleotide-binding domain
CH46_3850	PF07683	Cobalamin synthesis protein cobW C-terminal domain
CH46_3851	PF01569	PAP2 superfamily
CH46_3852	PF00877	NlpC/P60 family
CH46_3854	PF00563	EAL domain
CH46_3854	PF12792	CH46_3854
CH46_3855	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH46_3856	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_3857	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_3857	PF12911	CH46_3857
CH46_3858	PF00005	ABC transporter
CH46_3858	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CH46_3859	PF13989	CH46_3859
CH46_386	PF00665	Integrase core domain
CH46_386	PF02796	Helix-turn-helix domain of resolvase
CH46_3860	PF07690	Major Facilitator Superfamily
CH46_3861	PF00849	RNA pseudouridylate synthase
CH46_3861	PF01479	S4 domain
CH46_3862	PF00271	Helicase conserved C-terminal domain
CH46_3862	PF04851	Type III restriction enzyme, res subunit
CH46_3863	PF01386	Ribosomal L25p family
CH46_3864	PF01797	Transposase IS200 like
CH46_3865	PF04245	CH46_3865
CH46_3866	PF07208	Protein of unknown function (DUF1414)
CH46_3867	PF00884	Sulfatase
CH46_3867	PF11893	CH46_3867
CH46_387	PF01695	IstB-like ATP binding protein
CH46_3870	PF12639	DNase/tRNase domain of colicin-like bacteriocin
CH46_3874	PF00232	Glycosyl hydrolase family 1
CH46_3876	PF01380	SIS domain
CH46_3876	PF01418	Helix-turn-helix domain, rpiR family
CH46_3877	PF07484	Phage Tail Collar Domain
CH46_3878	PF10076	CH46_3878
CH46_3879	PF10076	CH46_3879
CH46_388	PF07690	Major Facilitator Superfamily
CH46_3880	PF04865	CH46_3880
CH46_3881	PF07409	CH46_3881
CH46_3882	PF06890	Bacteriophage Mu Gp45 protein
CH46_3883	PF05954	Phage late control gene D protein (GPD)
CH46_3884	PF07157	CH46_3884
CH46_3886	PF10109	CH46_3886
CH46_3887	PF10618	CH46_3887
CH46_3888	PF04984	Phage tail sheath protein
CH46_3888	PF17482	CH46_3888
CH46_3889	PF10948	CH46_3889
CH46_389	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH46_389	PF12793	CH46_389
CH46_3892	PF01261	Xylose isomerase-like TIM barrel
CH46_3893	PF00455	CH46_3893
CH46_3893	PF08220	DeoR-like helix-turn-helix domain
CH46_3894	PF00596	Class II Aldolase and Adducin N-terminal domain
CH46_3895	PF07005	Protein of unknown function, DUF1537
CH46_3895	PF17042	CH46_3895
CH46_3896	PF06530	CH46_3896
CH46_3897	PF00717	Peptidase S24-like
CH46_3897	PF01381	Helix-turn-helix
CH46_3898	PF06183	DinI-like family
CH46_39	PF05973	CH46_39
CH46_3900	PF01278	Omptin family
CH46_3901	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CH46_3901	PF00672	HAMP domain
CH46_3901	PF02743	Cache domain
CH46_3902	PF12706	Beta-lactamase superfamily domain
CH46_3903	PF13347	MFS/sugar transport protein
CH46_3904	PF00144	Beta-lactamase
CH46_3907	PF01797	Transposase IS200 like
CH46_3908	PF01797	Transposase IS200 like
CH46_3909	PF00267	Gram-negative porin
CH46_391	PF13343	Bacterial extracellular solute-binding protein
CH46_3911	PF07690	Major Facilitator Superfamily
CH46_3912	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_3913	PF01627	Hpt domain
CH46_3913	PF16359	CH46_3913
CH46_3914	PF00072	Response regulator receiver domain
CH46_3914	PF00196	Bacterial regulatory proteins, luxR family
CH46_3915	PF00072	Response regulator receiver domain
CH46_3915	PF00512	His Kinase A (phospho-acceptor) domain
CH46_3915	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_3915	PF09456	RcsC Alpha-Beta-Loop (ABL)
CH46_3916	PF00521	DNA gyrase/topoisomerase IV, subunit A
CH46_3916	PF03989	DNA gyrase C-terminal domain, beta-propeller
CH46_3917	PF13489	Methyltransferase domain
CH46_3918	PF00317	Ribonucleotide reductase, all-alpha domain
CH46_3918	PF02867	Ribonucleotide reductase, barrel domain
CH46_3918	PF03477	ATP cone domain
CH46_3919	PF00268	Ribonucleotide reductase, small chain
CH46_392	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_3920	PF00111	2Fe-2S iron-sulfur cluster binding domain
CH46_3921	PF03974	Ecotin
CH46_3922	PF00994	Probable molybdopterin binding domain
CH46_3923	PF03222	Tryptophan/tyrosine permease family
CH46_3924	PF07437	CH46_3924
CH46_3925	PF00199	Catalase
CH46_3925	PF06628	Catalase-related immune-responsive
CH46_3926	PF06733	DEAD_2
CH46_3926	PF13307	Helicase C-terminal domain
CH46_3927	PF00267	Gram-negative porin
CH46_3928	PF00892	EamA-like transporter family
CH46_393	PF00005	ABC transporter
CH46_3930	PF01276	Orn/Lys/Arg decarboxylase, major domain
CH46_3930	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
CH46_3930	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
CH46_3931	PF13520	Amino acid permease
CH46_3932	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_3933	PF00005	ABC transporter
CH46_3934	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_3937	PF00581	Rhodanese-like domain
CH46_3938	PF00282	Pyridoxal-dependent decarboxylase conserved domain
CH46_3939	PF13640	2OG-Fe(II) oxygenase superfamily
CH46_394	PF09335	CH46_394
CH46_3940	PF00005	ABC transporter
CH46_3941	PF00005	ABC transporter
CH46_3941	PF12399	Branched-chain amino acid ATP-binding cassette transporter
CH46_3942	PF02653	CH46_3942
CH46_3943	PF02653	CH46_3943
CH46_3943	PF13646	HEAT repeats
CH46_3944	PF13433	Periplasmic binding protein domain
CH46_3945	PF07308	CH46_3945
CH46_3946	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_3947	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_3948	PF12974	ABC transporter, phosphonate, periplasmic substrate-binding protein
CH46_3949	PF00005	ABC transporter
CH46_395	PF00136	DNA polymerase family B
CH46_395	PF03104	DNA polymerase family B, exonuclease domain
CH46_3950	PF04226	CH46_3950
CH46_3951	PF05076	Suppressor of fused protein (SUFU)
CH46_3952	PF01844	HNH endonuclease
CH46_3953	PF01928	CYTH domain
CH46_3954	PF01565	FAD binding domain
CH46_3954	PF09330	D-lactate dehydrogenase, membrane binding
CH46_3955	PF00768	D-alanyl-D-alanine carboxypeptidase
CH46_3957	PF01207	Dihydrouridine synthase (Dus)
CH46_3959	PF01797	Transposase IS200 like
CH46_396	PF00176	SNF2 family N-terminal domain
CH46_396	PF00271	Helicase conserved C-terminal domain
CH46_396	PF12137	RNA polymerase recycling family C-terminal
CH46_3960	PF03825	CH46_3960
CH46_3961	PF01048	Phosphorylase superfamily
CH46_3962	PF00892	EamA-like transporter family
CH46_3963	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_3963	PF03466	LysR substrate binding domain
CH46_3964	PF02028	BCCT family transporter
CH46_3965	PF00440	Bacterial regulatory proteins, tetR family
CH46_3965	PF13977	Bacterial transcriptional repressor
CH46_3966	PF00171	Aldehyde dehydrogenase family
CH46_3967	PF00732	GMC oxidoreductase
CH46_3967	PF05199	GMC oxidoreductase
CH46_3968	PF01797	Transposase IS200 like
CH46_3969	PF01027	Inhibitor of apoptosis-promoting Bax1
CH46_3970	PF02391	MoaE protein
CH46_3971	PF02597	ThiS family
CH46_3972	PF01967	MoaC family
CH46_3973	PF04055	Radical SAM superfamily
CH46_3973	PF06463	Molybdenum Cofactor Synthesis C
CH46_3973	PF13353	4Fe-4S single cluster domain
CH46_3975	PF01933	Uncharacterised protein family UPF0052
CH46_3976	PF09905	Uncharacterized conserved protein (DUF2132)
CH46_3977	PF00271	Helicase conserved C-terminal domain
CH46_3977	PF02151	UvrB/uvrC motif
CH46_3977	PF04851	Type III restriction enzyme, res subunit
CH46_3977	PF12344	Ultra-violet resistance protein B
CH46_3978	PF00005	ABC transporter
CH46_3979	PF13500	AAA domain
CH46_398	PF06744	CH46_398
CH46_398	PF06761	CH46_398
CH46_398	PF14331	CH46_398
CH46_3980	PF08241	Methyltransferase domain
CH46_3981	PF00155	Aminotransferase class I and II
CH46_3982	PF04055	Radical SAM superfamily
CH46_3982	PF06968	Biotin and Thiamin Synthesis associated domain
CH46_3983	PF00202	Aminotransferase class-III
CH46_3984	PF10282	Lactonase, 7-bladed beta-propeller
CH46_3985	PF08282	haloacid dehalogenase-like hydrolase
CH46_3986	PF00005	ABC transporter
CH46_3986	PF03459	TOBE domain
CH46_3987	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_3988	PF13531	Bacterial extracellular solute-binding protein
CH46_3989	PF10766	Protein of unknown function (DUF2592)
CH46_399	PF00691	OmpA family
CH46_399	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
CH46_3990	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_3990	PF03459	TOBE domain
CH46_3991	PF00005	ABC transporter
CH46_3993	PF02517	CAAX protease self-immunity
CH46_3994	PF16363	CH46_3994
CH46_3995	PF01087	Galactose-1-phosphate uridyl transferase, N-terminal domain
CH46_3995	PF02744	Galactose-1-phosphate uridyl transferase, C-terminal domain
CH46_3996	PF00288	GHMP kinases N terminal domain
CH46_3996	PF08544	GHMP kinases C terminal
CH46_3996	PF10509	Galactokinase galactose-binding signature
CH46_3998	PF01263	Aldose 1-epimerase
CH46_3999	PF07769	CH46_3999
CH46_4	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
CH46_4	PF01842	ACT domain
CH46_4	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
CH46_40	PF05930	Prophage CP4-57 regulatory protein (AlpA)
CH46_400	PF05936	CH46_400
CH46_4000	PF00300	Histidine phosphatase superfamily (branch 1)
CH46_4001	PF00665	Integrase core domain
CH46_4001	PF02796	Helix-turn-helix domain of resolvase
CH46_4002	PF01695	IstB-like ATP binding protein
CH46_4003	PF00793	DAHP synthetase I family
CH46_4005	PF01545	Cation efflux family
CH46_4006	PF04973	CH46_4006
CH46_4007	PF02445	Quinolinate synthetase A protein
CH46_401	PF12790	Type VI secretion lipoprotein
CH46_4010	PF13174	Tetratricopeptide repeat
CH46_4010	PF13432	Tetratricopeptide repeat
CH46_4010	PF16331	CH46_4010
CH46_4011	PF00691	OmpA family
CH46_4012	PF04052	TolB amino-terminal domain
CH46_4012	PF07676	WD40-like Beta Propeller Repeat
CH46_4013	PF06519	TolA C-terminal
CH46_4014	PF02472	Biopolymer transport protein ExbD/TolR
CH46_4015	PF01618	CH46_4015
CH46_4016	PF03061	Thioesterase superfamily
CH46_4017	PF09600	CH46_4017
CH46_4018	PF08173	CH46_4018
CH46_4019	PF02322	CH46_4019
CH46_402	PF13665	CH46_402
CH46_4020	PF01654	CH46_4020
CH46_4021	PF00549	CoA-ligase
CH46_4021	PF02629	CoA binding domain
CH46_4022	PF00549	CoA-ligase
CH46_4022	PF08442	ATP-grasp domain
CH46_4023	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
CH46_4023	PF00364	Biotin-requiring enzyme
CH46_4023	PF02817	e3 binding domain
CH46_4024	PF00676	Dehydrogenase E1 component
CH46_4024	PF02779	Transketolase, pyrimidine binding domain
CH46_4024	PF16078	CH46_4024
CH46_4024	PF16870	CH46_4024
CH46_4025	PF13085	2Fe-2S iron-sulfur cluster binding domain
CH46_4025	PF13534	4Fe-4S dicluster domain
CH46_4026	PF00890	FAD binding domain
CH46_4026	PF02910	Fumarate reductase flavoprotein C-term
CH46_4028	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
CH46_4029	PF00285	Citrate synthase
CH46_403	PF12059	CH46_403
CH46_4030	PF01025	GrpE
CH46_4031	PF01513	ATP-NAD kinase
CH46_4032	PF02463	RecF/RecN/SMC N terminal domain
CH46_4033	PF04355	SmpA / OmlA family
CH46_4034	PF03658	RnfH family Ubiquitin
CH46_4035	PF03364	Polyketide cyclase / dehydrase and lipid transport
CH46_4036	PF01668	SmpB protein
CH46_4037	PF01797	Transposase IS200 like
CH46_4038	PF00589	Phage integrase family
CH46_4038	PF13356	Domain of unknown function (DUF4102)
CH46_4039	PF14130	CH46_4039
CH46_404	PF00805	Pentapeptide repeats (8 copies)
CH46_404	PF13599	Pentapeptide repeats (9 copies)
CH46_4041	PF12834	CH46_4041
CH46_4041	PF12835	Integrase
CH46_4042	PF05930	Prophage CP4-57 regulatory protein (AlpA)
CH46_4043	PF10554	CH46_4043
CH46_4044	PF08273	Zinc-binding domain of primase-helicase
CH46_4044	PF13362	Toprim domain
CH46_4045	PF13481	AAA domain
CH46_4048	PF05973	CH46_4048
CH46_4050	PF00665	Integrase core domain
CH46_4050	PF02796	Helix-turn-helix domain of resolvase
CH46_4051	PF01695	IstB-like ATP binding protein
CH46_4054	PF02133	Permease for cytosine/purines, uracil, thiamine, allantoin
CH46_4056	PF00929	Exonuclease
CH46_4057	PF00075	RNase H
CH46_4058	PF08241	Methyltransferase domain
CH46_4059	PF00753	Metallo-beta-lactamase superfamily
CH46_4059	PF16123	CH46_4059
CH46_4060	PF01464	Transglycosylase SLT domain
CH46_4060	PF01476	LysM domain
CH46_4061	PF03372	Endonuclease/Exonuclease/phosphatase family
CH46_4063	PF00248	Aldo/keto reductase family
CH46_4069	PF13242	HAD-hyrolase-like
CH46_407	PF05954	Phage late control gene D protein (GPD)
CH46_4070	PF00005	ABC transporter
CH46_4070	PF09383	NIL domain
CH46_4071	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_4072	PF03180	NLPA lipoprotein
CH46_4073	PF16358	CH46_4073
CH46_4074	PF01980	Uncharacterised protein family UPF0066
CH46_4075	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
CH46_4075	PF03129	Anticodon binding domain
CH46_4075	PF04073	Aminoacyl-tRNA editing domain
CH46_4076	PF04170	NlpE N-terminal domain
CH46_4076	PF17185	CH46_4076
CH46_4077	PF00472	RF-1 domain
CH46_4078	PF07152	YaeQ protein
CH46_4079	PF06786	CH46_4079
CH46_408	PF00004	ATPase family associated with various cellular activities (AAA)
CH46_408	PF02861	Clp amino terminal domain
CH46_408	PF07724	AAA domain (Cdc48 subfamily)
CH46_4080	PF07073	Modulator of Rho-dependent transcription termination (ROF)
CH46_4081	PF00034	Cytochrome c
CH46_4082	PF01171	PP-loop family
CH46_4082	PF09179	TilS substrate binding domain
CH46_4082	PF11734	TilS substrate C-terminal domain
CH46_4083	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
CH46_4084	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
CH46_4085	PF01336	OB-fold nucleic acid binding domain
CH46_4085	PF02811	PHP domain
CH46_4085	PF07733	Bacterial DNA polymerase III alpha subunit
CH46_4085	PF14579	Helix-hairpin-helix motif
CH46_4086	PF01351	Ribonuclease HII
CH46_4087	PF02684	CH46_4087
CH46_4088	PF00132	Bacterial transferase hexapeptide (six repeats)
CH46_4088	PF13720	Udp N-acetylglucosamine O-acyltransferase; Domain 2
CH46_4089	PF07977	FabA-like domain
CH46_409	PF06996	CH46_409
CH46_4090	PF00132	Bacterial transferase hexapeptide (six repeats)
CH46_4090	PF04613	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
CH46_4091	PF03938	Outer membrane protein (OmpH-like)
CH46_4092	PF01103	Surface antigen
CH46_4092	PF07244	Surface antigen variable number repeat
CH46_4093	PF00595	PDZ domain (Also known as DHR or GLGF)
CH46_4093	PF02163	Peptidase family M50
CH46_4094	PF01148	Cytidylyltransferase family
CH46_4095	PF01255	Putative undecaprenyl diphosphate synthase
CH46_4096	PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
CH46_4096	PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal
CH46_4096	PF13288	DXP reductoisomerase C-terminal domain
CH46_4097	PF01765	Ribosome recycling factor
CH46_4098	PF00696	Amino acid kinase family
CH46_4099	PF00889	Elongation factor TS
CH46_410	PF05947	CH46_410
CH46_4100	PF00318	Ribosomal protein S2
CH46_4101	PF00557	Metallopeptidase family M24
CH46_4102	PF01842	ACT domain
CH46_4102	PF01909	Nucleotidyltransferase domain
CH46_4102	PF01966	HD domain
CH46_4102	PF08335	GlnD PII-uridylyltransferase
CH46_4103	PF00132	Bacterial transferase hexapeptide (six repeats)
CH46_4103	PF14602	Hexapeptide repeat of succinyl-transferase
CH46_4103	PF14805	Tetrahydrodipicolinate N-succinyltransferase N-terminal
CH46_4104	PF11944	CH46_4104
CH46_4105	PF00258	Flavodoxin
CH46_4106	PF00849	RNA pseudouridylate synthase
CH46_4107	PF04287	tRNA pseudouridine synthase C
CH46_4108	PF01797	Transposase IS200 like
CH46_4109	PF07348	Syd protein (SUKH-2)
CH46_411	PF04965	Gene 25-like lysozyme
CH46_4110	PF14489	QueF-like protein
CH46_4110	PF14819	Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term
CH46_4111	PF03641	Possible lysine decarboxylase
CH46_4111	PF11892	Domain of unknown function (DUF3412)
CH46_4111	PF14793	Domain of unknown function (DUF4478)
CH46_4112	PF01367	5'-3' exonuclease, C-terminal SAM fold
CH46_4112	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
CH46_4113	PF01728	FtsJ-like methyltransferase
CH46_4114	PF04241	CH46_4114
CH46_4115	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_4115	PF03466	LysR substrate binding domain
CH46_4116	PF06004	Bacterial protein of unknown function (DUF903)
CH46_4117	PF00266	Aminotransferase class-V
CH46_4118	PF02657	Fe-S metabolism associated domain
CH46_4119	PF00899	ThiF family
CH46_412	PF05638	Protein of unknown function (DUF796)
CH46_4120	PF03562	MltA specific insert domain
CH46_4120	PF06725	3D domain
CH46_4123	PF01520	N-acetylmuramoyl-L-alanine amidase
CH46_4123	PF11741	AMIN domain
CH46_4124	PF00583	Acetyltransferase (GNAT) family
CH46_4124	PF00696	Amino acid kinase family
CH46_4125	PF13538	UvrD-like helicase C-terminal domain
CH46_4125	PF13604	AAA domain
CH46_4126	PF00580	UvrD/REP helicase N-terminal domain
CH46_4126	PF13361	UvrD-like helicase C-terminal domain
CH46_4127	PF00675	Insulinase (Peptidase family M16)
CH46_4127	PF05193	Peptidase M16 inactive domain
CH46_4127	PF16187	CH46_4127
CH46_4128	PF04257	Exodeoxyribonuclease V, gamma subunit
CH46_4129	PF07963	Prokaryotic N-terminal methylation motif
CH46_4129	PF12528	CH46_4129
CH46_413	PF05943	CH46_413
CH46_4130	PF10713	CH46_4130
CH46_4132	PF01695	IstB-like ATP binding protein
CH46_4133	PF00665	Integrase core domain
CH46_4133	PF02796	Helix-turn-helix domain of resolvase
CH46_4134	PF00109	Beta-ketoacyl synthase, N-terminal domain
CH46_4134	PF00501	AMP-binding enzyme
CH46_4134	PF00550	Phosphopantetheine attachment site
CH46_4134	PF02801	Beta-ketoacyl synthase, C-terminal domain
CH46_4135	PF00593	TonB dependent receptor
CH46_4135	PF07715	TonB-dependent Receptor Plug Domain
CH46_4136	PF01546	Peptidase family M20/M25/M40
CH46_4136	PF07687	Peptidase dimerisation domain
CH46_4137	PF03806	CH46_4137
CH46_4138	PF12468	Type III secretion system leucine rich repeat protein
CH46_4138	PF14496	C-terminal novel E3 ligase, LRR-interacting
CH46_4139	PF12468	Type III secretion system leucine rich repeat protein
CH46_414	PF05591	CH46_414
CH46_4140	PF12468	Type III secretion system leucine rich repeat protein
CH46_4140	PF14496	C-terminal novel E3 ligase, LRR-interacting
CH46_4141	PF13018	CH46_4141
CH46_4143	PF07906	CH46_4143
CH46_4144	PF00873	AcrB/AcrD/AcrF family
CH46_4145	PF16576	CH46_4145
CH46_4147	PF00563	EAL domain
CH46_4147	PF00989	PAS fold
CH46_4147	PF00990	GGDEF domain
CH46_4147	PF05228	CH46_4147
CH46_4148	PF00665	Integrase core domain
CH46_4148	PF13276	CH46_4148
CH46_4149	PF13518	Helix-turn-helix domain
CH46_415	PF06812	CH46_415
CH46_4150	PF13347	MFS/sugar transport protein
CH46_4151	PF00593	TonB dependent receptor
CH46_4151	PF07715	TonB-dependent Receptor Plug Domain
CH46_4152	PF13434	L-lysine 6-monooxygenase (NADPH-requiring)
CH46_4153	PF04183	IucA / IucC family
CH46_4153	PF06276	Ferric iron reductase FhuF-like transporter
CH46_4154	PF13523	Acetyltransferase (GNAT) domain
CH46_4155	PF04183	IucA / IucC family
CH46_4155	PF06276	Ferric iron reductase FhuF-like transporter
CH46_4156	PF04183	IucA / IucC family
CH46_4157	PF07690	Major Facilitator Superfamily
CH46_4158	PF00775	Dioxygenase
CH46_4159	PF10503	Esterase PHB depolymerase
CH46_416	PF10074	CH46_416
CH46_4160	PF00765	Autoinducer synthetase
CH46_4161	PF00196	Bacterial regulatory proteins, luxR family
CH46_4161	PF03472	Autoinducer binding domain
CH46_4163	PF02517	CAAX protease self-immunity
CH46_4165	PF03811	CH46_4165
CH46_4165	PF12759	CH46_4165
CH46_4168	PF05591	CH46_4168
CH46_4169	PF05943	CH46_4169
CH46_417	PF00849	RNA pseudouridylate synthase
CH46_4170	PF05936	CH46_4170
CH46_4171	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
CH46_4172	PF00691	OmpA family
CH46_4173	PF05638	Protein of unknown function (DUF796)
CH46_4174	PF00004	ATPase family associated with various cellular activities (AAA)
CH46_4174	PF07724	AAA domain (Cdc48 subfamily)
CH46_4174	PF10431	C-terminal, D2-small domain, of ClpB protein
CH46_4175	PF05954	Phage late control gene D protein (GPD)
CH46_4175	PF10106	CH46_4175
CH46_4175	PF13296	CH46_4175
CH46_4177	PF03811	CH46_4177
CH46_4177	PF12759	CH46_4177
CH46_4178	PF10106	CH46_4178
CH46_4179	PF01551	Peptidase family M23
CH46_418	PF00226	DnaJ domain
CH46_418	PF05099	Tellurite resistance protein TerB
CH46_4181	PF03811	CH46_4181
CH46_4181	PF12759	CH46_4181
CH46_4182	PF03400	CH46_4182
CH46_4183	PF10106	CH46_4183
CH46_4184	PF00589	Phage integrase family
CH46_4186	PF01276	Orn/Lys/Arg decarboxylase, major domain
CH46_4186	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
CH46_4186	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
CH46_4187	PF13407	Periplasmic binding protein domain
CH46_4188	PF00005	ABC transporter
CH46_4189	PF02653	CH46_4189
CH46_419	PF03968	OstA-like protein
CH46_419	PF04453	Organic solvent tolerance protein
CH46_4190	PF00593	TonB dependent receptor
CH46_4190	PF07715	TonB-dependent Receptor Plug Domain
CH46_4191	PF01497	Periplasmic binding protein
CH46_4192	PF01464	Transglycosylase SLT domain
CH46_4192	PF11873	Domain of unknown function (DUF3393)
CH46_4193	PF04362	Bacterial Fe(2+) trafficking
CH46_4194	PF00633	Helix-hairpin-helix motif
CH46_4194	PF00730	HhH-GPD superfamily base excision DNA repair protein
CH46_4194	PF10576	Iron-sulfur binding domain of endonuclease III
CH46_4194	PF14815	NUDIX domain
CH46_4195	PF02390	Putative methyltransferase
CH46_4196	PF04320	CH46_4196
CH46_4197	PF04960	Glutaminase
CH46_4198	PF11101	CH46_4198
CH46_4199	PF11101	CH46_4199
CH46_420	PF00639	PPIC-type PPIASE domain
CH46_420	PF09312	SurA N-terminal domain
CH46_4200	PF11713	Peptidase C80 family
CH46_4201	PF04055	Radical SAM superfamily
CH46_4201	PF06969	HemN C-terminal domain
CH46_4202	PF01725	Ham1 family
CH46_4203	PF02594	Uncharacterised ACR, YggU family COG1872
CH46_4204	PF02325	CH46_4204
CH46_4205	PF03807	NADP oxidoreductase coenzyme F420-dependent
CH46_4205	PF14748	Pyrroline-5-carboxylate reductase dimerisation
CH46_4206	PF01168	Alanine racemase, N-terminal domain
CH46_4207	PF00437	Type II/IV secretion system protein
CH46_4208	PF04371	Porphyromonas-type peptidyl-arginine deiminase
CH46_4209	PF00795	Carbon-nitrogen hydrolase
CH46_421	PF04166	Pyridoxal phosphate biosynthetic protein PdxA
CH46_4210	PF03652	Uncharacterised protein family (UPF0081)
CH46_4211	PF02622	Uncharacterized ACR, COG1678
CH46_4212	PF02951	Prokaryotic glutathione synthetase, N-terminal domain
CH46_4212	PF02955	Prokaryotic glutathione synthetase, ATP-grasp domain
CH46_4213	PF04452	RNA methyltransferase
CH46_4214	PF04231	Endonuclease I
CH46_4215	PF10263	CH46_4215
CH46_4215	PF17283	CH46_4215
CH46_4216	PF00438	S-adenosylmethionine synthetase, N-terminal domain
CH46_4216	PF02772	S-adenosylmethionine synthetase, central domain
CH46_4216	PF02773	S-adenosylmethionine synthetase, C-terminal domain
CH46_4218	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
CH46_4219	PF00355	Rieske [2Fe-2S] domain
CH46_422	PF00398	Ribosomal RNA adenine dimethylase
CH46_4220	PF01435	Peptidase family M48
CH46_4221	PF00456	Transketolase, thiamine diphosphate binding domain
CH46_4221	PF02779	Transketolase, pyrimidine binding domain
CH46_4221	PF02780	Transketolase, C-terminal domain
CH46_4222	PF01797	Transposase IS200 like
CH46_4223	PF00665	Integrase core domain
CH46_4223	PF02796	Helix-turn-helix domain of resolvase
CH46_4224	PF01695	IstB-like ATP binding protein
CH46_4225	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CH46_4225	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
CH46_4226	PF00162	Phosphoglycerate kinase
CH46_4227	PF01116	Fructose-bisphosphate aldolase class-II
CH46_4228	PF00924	Mechanosensitive ion channel
CH46_4228	PF05552	Conserved TM helix
CH46_4229	PF01810	CH46_4229
CH46_423	PF04379	Protein of unknown function (DUF525)
CH46_4231	PF00589	Phage integrase family
CH46_4233	PF06213	CH46_4233
CH46_4233	PF11775	CH46_4233
CH46_4234	PF07728	AAA domain (dynein-related subfamily)
CH46_4235	PF02811	PHP domain
CH46_4235	PF07733	Bacterial DNA polymerase III alpha subunit
CH46_4235	PF14579	Helix-hairpin-helix motif
CH46_4236	PF00665	Integrase core domain
CH46_4236	PF02796	Helix-turn-helix domain of resolvase
CH46_4237	PF01695	IstB-like ATP binding protein
CH46_4238	PF02413	CH46_4238
CH46_424	PF00149	Calcineurin-like phosphoesterase
CH46_4240	PF03335	Phage tail fibre repeat
CH46_4240	PF03406	CH46_4240
CH46_4240	PF07484	Phage Tail Collar Domain
CH46_4241	PF14301	CH46_4241
CH46_4242	PF09327	CH46_4242
CH46_4242	PF12421	CH46_4242
CH46_4242	PF13550	CH46_4242
CH46_4244	PF00877	NlpC/P60 family
CH46_4244	PF14464	Prokaryotic homologs of the JAB domain
CH46_4245	PF05100	CH46_4245
CH46_4246	PF05939	CH46_4246
CH46_4247	PF09718	CH46_4247
CH46_4249	PF02368	Bacterial Ig-like domain (group 2)
CH46_425	PF12582	CH46_425
CH46_4255	PF02368	Bacterial Ig-like domain (group 2)
CH46_4259	PF03237	Terminase-like family
CH46_426	PF01797	Transposase IS200 like
CH46_4264	PF00005	ABC transporter
CH46_4265	PF02195	ParB-like nuclease domain
CH46_4266	PF02195	ParB-like nuclease domain
CH46_4267	PF00270	DEAD/DEAH box helicase
CH46_4267	PF00271	Helicase conserved C-terminal domain
CH46_427	PF00186	Dihydrofolate reductase
CH46_4270	PF03614	CH46_4270
CH46_4276	PF01797	Transposase IS200 like
CH46_4279	PF13476	AAA domain
CH46_428	PF12821	CH46_428
CH46_4281	PF00149	Calcineurin-like phosphoesterase
CH46_4282	PF09084	NMT1/THI5 like
CH46_4284	PF01051	Initiator Replication protein
CH46_4289	PF10765	Protein of unknown function (DUF2591)
CH46_429	PF06738	CH46_429
CH46_4290	PF01145	SPFH domain / Band 7 family
CH46_4292	PF00154	recA bacterial DNA recombination protein
CH46_4294	PF01367	5'-3' exonuclease, C-terminal SAM fold
CH46_4294	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
CH46_430	PF01810	CH46_430
CH46_4301	PF01695	IstB-like ATP binding protein
CH46_4302	PF00665	Integrase core domain
CH46_4302	PF02796	Helix-turn-helix domain of resolvase
CH46_4303	PF02195	ParB-like nuclease domain
CH46_4304	PF06006	Bacterial protein of unknown function (DUF905)
CH46_4305	PF07275	Antirestriction protein (ArdA)
CH46_4307	PF07128	CH46_4307
CH46_4309	PF01555	DNA methylase
CH46_431	PF02142	MGS-like domain
CH46_431	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
CH46_431	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CH46_4311	PF13191	AAA ATPase domain
CH46_4312	PF02195	ParB-like nuclease domain
CH46_4312	PF08775	ParB family
CH46_4313	PF13614	AAA domain
CH46_4314	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
CH46_4315	PF05016	Plasmid stabilisation system protein
CH46_4316	PF00239	Resolvase, N terminal domain
CH46_4317	PF04754	CH46_4317
CH46_4318	PF01797	Transposase IS200 like
CH46_432	PF00117	Glutamine amidotransferase class-I
CH46_432	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
CH46_4320	PF13091	PLD-like domain
CH46_4322	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
CH46_4323	PF01548	CH46_4323
CH46_4323	PF02371	CH46_4323
CH46_4324	PF00872	CH46_4324
CH46_4325	PF06445	GyrI-like small molecule binding domain
CH46_4325	PF12833	Helix-turn-helix domain
CH46_4326	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH46_4326	PF02753	Pili assembly chaperone PapD, C-terminal domain
CH46_4328	PF00577	Outer membrane usher protein
CH46_4328	PF13953	PapC C-terminal domain
CH46_4329	PF09255	Caf1 Capsule antigen
CH46_433	PF01113	Dihydrodipicolinate reductase, N-terminus
CH46_433	PF05173	Dihydrodipicolinate reductase, C-terminus
CH46_4333	PF00872	CH46_4333
CH46_4334	PF12468	Type III secretion system leucine rich repeat protein
CH46_4336	PF13610	CH46_4336
CH46_4337	PF05844	YopD protein
CH46_4338	PF04888	CH46_4338
CH46_4339	PF07720	Tetratricopeptide repeat
CH46_434	PF01797	Transposase IS200 like
CH46_4340	PF04792	V antigen (LcrV) protein
CH46_4341	PF07216	CH46_4341
CH46_4342	PF09621	CH46_4342
CH46_4343	PF00771	FHIPEP family
CH46_4345	PF09474	CH46_4345
CH46_4347	PF09059	TyeA
CH46_4348	PF07201	HrpJ-like domain
CH46_4349	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CH46_4349	PF02874	ATP synthase alpha/beta family, beta-barrel domain
CH46_435	PF02401	LytB protein
CH46_4350	PF07321	Type III secretion protein YscO
CH46_4351	PF02120	Flagellar hook-length control protein FliK
CH46_4352	PF01052	Surface presentation of antigens (SPOA)
CH46_4353	PF00813	CH46_4353
CH46_4354	PF01313	CH46_4354
CH46_4355	PF01311	CH46_4355
CH46_4356	PF01312	FlhB HrpN YscU SpaS Family
CH46_4357	PF09619	Type III secretion system lipoprotein chaperone (YscW)
CH46_4358	PF02311	AraC-like ligand binding domain
CH46_4358	PF12833	Helix-turn-helix domain
CH46_4359	PF05932	Tir chaperone protein (CesT) family
CH46_436	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
CH46_4360	PF00263	CH46_4360
CH46_4360	PF03958	Bacterial type II/III secretion system short domain
CH46_4361	PF16693	CH46_4361
CH46_4361	PF16697	CH46_4361
CH46_4362	PF08988	Protein of unknown function (DUF1895)
CH46_4363	PF09392	Type III secretion needle MxiH like
CH46_4364	PF09477	Bacterial type II secretion system chaperone protein (type_III_yscG)
CH46_4365	PF09025	YopR Core
CH46_4366	PF17001	CH46_4366
CH46_4367	PF01514	Secretory protein of YscJ/FliF family
CH46_4368	PF06578	CH46_4368
CH46_4369	PF02108	CH46_4369
CH46_437	PF01252	CH46_437
CH46_4370	PF09013	YopH, N-terminal
CH46_4371	PF01527	Transposase
CH46_4373	PF13683	CH46_4373
CH46_4374	PF00102	Protein-tyrosine phosphatase
CH46_4374	PF09013	YopH, N-terminal
CH46_4375	PF13683	CH46_4375
CH46_4376	PF03421	CH46_4376
CH46_4377	PF00069	Protein kinase domain
CH46_4377	PF09632	Rac1-binding domain
CH46_438	PF00133	tRNA synthetases class I (I, L, M and V)
CH46_438	PF06827	Zinc finger found in FPG and IleRS
CH46_438	PF08264	Anticodon-binding domain of tRNA
CH46_4380	PF13683	CH46_4380
CH46_4384	PF02387	CH46_4384
CH46_4385	PF10723	Replication regulatory protein RepB
CH46_4386	PF13276	CH46_4386
CH46_4387	PF00665	Integrase core domain
CH46_4388	PF01527	Transposase
CH46_439	PF01687	Riboflavin kinase
CH46_439	PF06574	FAD synthetase
CH46_4391	PF03895	YadA-like C-terminal region
CH46_4391	PF05658	Head domain of trimeric autotransporter adhesin
CH46_4391	PF05662	Coiled stalk of trimeric autotransporter adhesin
CH46_4394	PF01526	CH46_4394
CH46_4394	PF13700	CH46_4394
CH46_4396	PF00239	Resolvase, N terminal domain
CH46_4396	PF02796	Helix-turn-helix domain of resolvase
CH46_4399	PF01527	Transposase
CH46_44	PF02661	Fic/DOC family
CH46_440	PF01649	Ribosomal protein S20
CH46_4400	PF13276	CH46_4400
CH46_4400	PF13683	CH46_4400
CH46_4401	PF05932	Tir chaperone protein (CesT) family
CH46_4402	PF01695	IstB-like ATP binding protein
CH46_4404	PF00665	Integrase core domain
CH46_4404	PF02796	Helix-turn-helix domain of resolvase
CH46_4405	PF01695	IstB-like ATP binding protein
CH46_4407	PF13683	CH46_4407
CH46_4408	PF05932	Tir chaperone protein (CesT) family
CH46_4409	PF03545	Yersinia virulence determinant (YopE)
CH46_4409	PF09020	YopE, N terminal
CH46_441	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_441	PF03466	LysR substrate binding domain
CH46_4410	PF05016	Plasmid stabilisation system protein
CH46_4411	PF03693	Uncharacterised protein family (UPF0156)
CH46_4413	PF02195	ParB-like nuclease domain
CH46_4414	PF00376	MerR family regulatory protein
CH46_4414	PF13614	AAA domain
CH46_4415	PF13683	CH46_4415
CH46_4416	PF13276	CH46_4416
CH46_4417	PF01527	Transposase
CH46_4418	PF05818	CH46_4418
CH46_442	PF06965	Na+/H+ antiporter 1
CH46_4420	PF03543	Yersinia/Haemophilus virulence surface antigen
CH46_4421	PF01695	IstB-like ATP binding protein
CH46_4422	PF01815	Rop protein
CH46_4423	PF16765	CH46_4423
CH46_4424	PF16754	CH46_4424
CH46_4426	PF01278	Omptin family
CH46_4427	PF13744	Helix-turn-helix domain
CH46_4428	PF05973	CH46_4428
CH46_443	PF00226	DnaJ domain
CH46_443	PF00684	DnaJ central domain
CH46_443	PF01556	DnaJ C terminal domain
CH46_444	PF00012	Hsp70 protein
CH46_445	PF01184	CH46_445
CH46_447	PF07690	Major Facilitator Superfamily
CH46_448	PF00994	Probable molybdopterin binding domain
CH46_449	PF00923	Transaldolase
CH46_45	PF05488	PAAR motif
CH46_45	PF06958	S-type Pyocin
CH46_450	PF03883	CH46_450
CH46_452	PF00291	Pyridoxal-phosphate dependent enzyme
CH46_452	PF14821	Threonine synthase N terminus
CH46_453	PF00288	GHMP kinases N terminal domain
CH46_453	PF08544	GHMP kinases C terminal
CH46_454	PF00696	Amino acid kinase family
CH46_454	PF00742	Homoserine dehydrogenase
CH46_454	PF01842	ACT domain
CH46_454	PF03447	Homoserine dehydrogenase, NAD binding domain
CH46_454	PF13840	ACT domain
CH46_456	PF00072	Response regulator receiver domain
CH46_456	PF00486	Transcriptional regulatory protein, C terminal
CH46_457	PF05981	CH46_457
CH46_459	PF00300	Histidine phosphatase superfamily (branch 1)
CH46_46	PF14206	CH46_46
CH46_460	PF06445	GyrI-like small molecule binding domain
CH46_460	PF12833	Helix-turn-helix domain
CH46_461	PF01371	Trp repressor protein
CH46_462	PF01931	Protein of unknown function DUF84
CH46_463	PF01464	Transglycosylase SLT domain
CH46_463	PF14718	Soluble lytic murein transglycosylase L domain
CH46_464	PF00122	E1-E2 ATPase
CH46_464	PF00689	Cation transporting ATPase, C-terminus
CH46_464	PF00690	Cation transporter/ATPase, N-terminus
CH46_464	PF00702	haloacid dehalogenase-like hydrolase
CH46_465	PF13689	CH46_465
CH46_466	PF00990	GGDEF domain
CH46_466	PF17152	CH46_466
CH46_467	PF00691	OmpA family
CH46_468	PF00005	ABC transporter
CH46_469	PF00005	ABC transporter
CH46_469	PF12848	ABC transporter
CH46_470	PF02661	Fic/DOC family
CH46_470	PF13776	CH46_470
CH46_471	PF01381	Helix-turn-helix
CH46_471	PF13521	AAA domain
CH46_472	PF13481	AAA domain
CH46_472	PF13541	Subunit ChlI of Mg-chelatase
CH46_473	PF12710	haloacid dehalogenase-like hydrolase
CH46_474	PF10144	CH46_474
CH46_475	PF01048	Phosphorylase superfamily
CH46_476	PF01676	Metalloenzyme superfamily
CH46_477	PF00591	Glycosyl transferase family, a/b domain
CH46_477	PF07831	Pyrimidine nucleoside phosphorylase C-terminal domain
CH46_478	PF00591	Glycosyl transferase family, a/b domain
CH46_478	PF02885	Glycosyl transferase family, helical bundle domain
CH46_479	PF01791	DeoC/LacD family aldolase
CH46_48	PF09204	Bacterial self-protective colicin-like immunity
CH46_480	PF01773	Na+ dependent nucleoside transporter N-terminus
CH46_480	PF07662	Na+ dependent nucleoside transporter C-terminus
CH46_480	PF07670	Nucleoside recognition
CH46_481	PF01026	TatD related DNase
CH46_482	PF01734	Patatin-like phospholipase
CH46_483	PF07043	CH46_483
CH46_484	PF04972	BON domain
CH46_485	PF00009	Elongation factor Tu GTP binding domain
CH46_485	PF03144	Elongation factor Tu domain 2
CH46_485	PF16658	CH46_485
CH46_486	PF00583	Acetyltransferase (GNAT) family
CH46_487	PF03603	DNA polymerase III psi subunit
CH46_488	PF05175	Methyltransferase small domain
CH46_488	PF08468	Methyltransferase small domain N-terminal
CH46_490	PF07256	CH46_490
CH46_491	PF00990	GGDEF domain
CH46_492	PF01095	Pectinesterase
CH46_494	PF00873	AcrB/AcrD/AcrF family
CH46_495	PF16576	CH46_495
CH46_496	PF06305	CH46_496
CH46_497	PF04932	CH46_497
CH46_498	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
CH46_499	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
CH46_499	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
CH46_5	PF01812	5-formyltetrahydrofolate cyclo-ligase family
CH46_50	PF11340	CH46_50
CH46_500	PF04198	Putative sugar-binding domain
CH46_501	PF00325	Bacterial regulatory proteins, crp family
CH46_502	PF00005	ABC transporter
CH46_503	PF02653	CH46_503
CH46_504	PF02653	CH46_504
CH46_505	PF13407	Periplasmic binding protein domain
CH46_506	PF01791	DeoC/LacD family aldolase
CH46_507	PF03992	Antibiotic biosynthesis monooxygenase
CH46_508	PF10696	CH46_508
CH46_509	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
CH46_509	PF00381	PTS HPr component phosphorylation site
CH46_509	PF00391	PEP-utilising enzyme, mobile domain
CH46_509	PF02896	PEP-utilising enzyme, TIM barrel domain
CH46_509	PF05524	PEP-utilising enzyme, N-terminal
CH46_510	PF02378	Phosphotransferase system, EIIC
CH46_511	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
CH46_512	PF12833	Helix-turn-helix domain
CH46_513	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
CH46_515	PF05987	CH46_515
CH46_516	PF01435	Peptidase family M48
CH46_517	PF09983	CH46_517
CH46_517	PF11795	CH46_517
CH46_518	PF13558	Putative exonuclease SbcCD, C subunit
CH46_52	PF05488	PAAR motif
CH46_523	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_524	PF01555	DNA methylase
CH46_525	PF01527	Transposase
CH46_526	PF10117	CH46_526
CH46_527	PF07728	AAA domain (dynein-related subfamily)
CH46_528	PF00665	Integrase core domain
CH46_528	PF02796	Helix-turn-helix domain of resolvase
CH46_529	PF01695	IstB-like ATP binding protein
CH46_53	PF12977	Domain of Unknown Function with PDB structure (DUF3861)
CH46_531	PF07338	Protein of unknown function (DUF1471)
CH46_532	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
CH46_532	PF02770	Acyl-CoA dehydrogenase, middle domain
CH46_533	PF00588	SpoU rRNA Methylase family
CH46_533	PF08032	RNA 2'-O ribose methyltransferase substrate binding
CH46_534	PF00575	S1 RNA binding domain
CH46_534	PF00773	RNB domain
CH46_534	PF08206	Ribonuclease B OB domain
CH46_534	PF08461	Ribonuclease R winged-helix domain
CH46_535	PF02082	Transcriptional regulator
CH46_536	PF00709	Adenylosuccinate synthetase
CH46_537	PF09838	CH46_537
CH46_538	PF01145	SPFH domain / Band 7 family
CH46_539	PF01145	SPFH domain / Band 7 family
CH46_539	PF12221	CH46_539
CH46_54	PF03551	Transcriptional regulator PadR-like family
CH46_540	PF01926	50S ribosome-binding GTPase
CH46_540	PF13167	CH46_540
CH46_540	PF16360	CH46_540
CH46_541	PF17209	CH46_541
CH46_542	PF01715	IPP transferase
CH46_543	PF01119	DNA mismatch repair protein, C-terminal domain
CH46_543	PF08676	MutL C terminal dimerisation domain
CH46_543	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_544	PF01476	LysM domain
CH46_544	PF01520	N-acetylmuramoyl-L-alanine amidase
CH46_544	PF11741	AMIN domain
CH46_545	PF02367	Uncharacterised P-loop hydrolase UPF0079
CH46_546	PF01256	Carbohydrate kinase
CH46_546	PF03853	YjeF-related protein N-terminus
CH46_547	PF08331	CH46_547
CH46_547	PF13484	CH46_547
CH46_55	PF05708	Orthopoxvirus protein of unknown function (DUF830)
CH46_550	PF00929	Exonuclease
CH46_551	PF03193	Protein of unknown function, DUF258
CH46_552	PF02666	CH46_552
CH46_553	PF00924	Mechanosensitive ion channel
CH46_553	PF12794	CH46_553
CH46_553	PF12795	CH46_553
CH46_554	PF00152	tRNA synthetases class II (D, K and N)
CH46_555	PF00890	FAD binding domain
CH46_555	PF02910	Fumarate reductase flavoprotein C-term
CH46_556	PF13085	2Fe-2S iron-sulfur cluster binding domain
CH46_556	PF13183	4Fe-4S dicluster domain
CH46_557	PF02300	Fumarate reductase subunit C
CH46_558	PF02313	Fumarate reductase subunit D
CH46_559	PF01797	Transposase IS200 like
CH46_560	PF00893	Small Multidrug Resistance protein
CH46_561	PF01132	Elongation factor P (EF-P) OB domain
CH46_561	PF08207	Elongation factor P (EF-P) KOW-like domain
CH46_561	PF09285	Elongation factor P, C-terminal
CH46_562	PF04055	Radical SAM superfamily
CH46_562	PF13353	4Fe-4S single cluster domain
CH46_563	PF13698	CH46_563
CH46_564	PF00118	TCP-1/cpn60 chaperonin family
CH46_565	PF00166	Chaperonin 10 Kd subunit
CH46_566	PF04186	CH46_566
CH46_567	PF00206	Lyase
CH46_567	PF10415	Fumarase C C-terminus
CH46_568	PF03605	CH46_568
CH46_569	PF03091	CutA1 divalent ion tolerance protein
CH46_57	PF13407	Periplasmic binding protein domain
CH46_570	PF02683	CH46_570
CH46_570	PF11412	Disulphide bond corrector protein DsbC
CH46_570	PF13899	Thioredoxin-like
CH46_571	PF00384	Molybdopterin oxidoreductase
CH46_571	PF01568	Molydopterin dinucleotide binding domain
CH46_571	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
CH46_572	PF12800	4Fe-4S binding domain
CH46_572	PF13187	4Fe-4S dicluster domain
CH46_573	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH46_573	PF13247	4Fe-4S dicluster domain
CH46_573	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
CH46_574	PF00440	Bacterial regulatory proteins, tetR family
CH46_576	PF03272	CH46_576
CH46_576	PF13402	Peptidase M60-like family
CH46_58	PF02653	CH46_58
CH46_580	PF06379	CH46_580
CH46_581	PF02311	AraC-like ligand binding domain
CH46_581	PF12833	Helix-turn-helix domain
CH46_582	PF02311	AraC-like ligand binding domain
CH46_582	PF12833	Helix-turn-helix domain
CH46_585	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
CH46_585	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
CH46_586	PF06134	L-rhamnose isomerase (RhaA)
CH46_587	PF00596	Class II Aldolase and Adducin N-terminal domain
CH46_588	PF00465	Iron-containing alcohol dehydrogenase
CH46_589	PF05336	Domain of unknown function (DUF718)
CH46_59	PF00005	ABC transporter
CH46_590	PF00436	Single-strand binding protein family
CH46_591	PF00005	ABC transporter
CH46_592	PF04237	YjbR
CH46_593	PF00155	Aminotransferase class I and II
CH46_594	PF00842	Alanine racemase, C-terminal domain
CH46_594	PF01168	Alanine racemase, N-terminal domain
CH46_595	PF00772	DnaB-like helicase N terminal domain
CH46_595	PF03796	DnaB-like helicase C terminal domain
CH46_596	PF00107	Zinc-binding dehydrogenase
CH46_596	PF08240	Alcohol dehydrogenase GroES-like domain
CH46_597	PF09583	CH46_597
CH46_598	PF01207	Dihydrouridine synthase (Dus)
CH46_599	PF01475	Ferric uptake regulator family
CH46_6	PF05164	Cell division protein ZapA
CH46_60	PF00005	ABC transporter
CH46_60	PF08402	TOBE domain
CH46_600	PF00717	Peptidase S24-like
CH46_600	PF01726	LexA DNA binding domain
CH46_601	PF01219	Prokaryotic diacylglycerol kinase
CH46_602	PF01553	Acyltransferase
CH46_603	PF01040	UbiA prenyltransferase family
CH46_604	PF04345	Chorismate lyase
CH46_605	PF03797	Autotransporter beta-domain
CH46_606	PF01565	FAD binding domain
CH46_606	PF08031	Berberine and berberine like
CH46_609	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH46_61	PF13416	Bacterial extracellular solute-binding protein
CH46_610	PF00577	Outer membrane usher protein
CH46_610	PF13953	PapC C-terminal domain
CH46_610	PF13954	PapC N-terminal domain
CH46_611	PF06551	CH46_611
CH46_612	PF02342	TerD domain
CH46_613	PF02342	TerD domain
CH46_614	PF03741	CH46_614
CH46_615	PF05099	Tellurite resistance protein TerB
CH46_616	PF02342	TerD domain
CH46_617	PF02342	TerD domain
CH46_618	PF15632	CH46_618
CH46_619	PF12500	CH46_619
CH46_619	PF15609	CH46_619
CH46_62	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_621	PF11202	CH46_621
CH46_621	PF15608	CH46_621
CH46_622	PF15617	CH46_622
CH46_624	PF02219	Methylenetetrahydrofolate reductase
CH46_625	PF04055	Radical SAM superfamily
CH46_626	PF06228	Haem utilisation ChuX/HutX
CH46_627	PF13460	NADH(P)-binding
CH46_629	PF00593	TonB dependent receptor
CH46_63	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_630	PF05171	Haemin-degrading HemS
CH46_631	PF01497	Periplasmic binding protein
CH46_632	PF01032	FecCD transport family
CH46_633	PF00005	ABC transporter
CH46_634	PF01053	Cys/Met metabolism PLP-dependent enzyme
CH46_636	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_636	PF03466	LysR substrate binding domain
CH46_637	PF01206	Sulfurtransferase TusA
CH46_638	PF04143	CH46_638
CH46_639	PF01312	FlhB HrpN YscU SpaS Family
CH46_64	PF07745	Glycosyl hydrolase family 53
CH46_640	PF01311	CH46_640
CH46_641	PF01313	CH46_641
CH46_642	PF00813	CH46_642
CH46_643	PF01052	Surface presentation of antigens (SPOA)
CH46_646	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CH46_646	PF02874	ATP synthase alpha/beta family, beta-barrel domain
CH46_647	PF00771	FHIPEP family
CH46_648	PF06188	CH46_648
CH46_649	PF13327	CH46_649
CH46_65	PF02449	Beta-galactosidase
CH46_65	PF08532	Beta-galactosidase trimerisation domain
CH46_65	PF08533	Beta-galactosidase C-terminal domain
CH46_650	PF01514	Secretory protein of YscJ/FliF family
CH46_652	PF06287	CH46_652
CH46_653	PF09392	Type III secretion needle MxiH like
CH46_654	PF12833	Helix-turn-helix domain
CH46_655	PF08988	Protein of unknown function (DUF1895)
CH46_656	PF16693	CH46_656
CH46_657	PF00263	CH46_657
CH46_657	PF03958	Bacterial type II/III secretion system short domain
CH46_658	PF00072	Response regulator receiver domain
CH46_658	PF00512	His Kinase A (phospho-acceptor) domain
CH46_658	PF01627	Hpt domain
CH46_658	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_659	PF00072	Response regulator receiver domain
CH46_659	PF00196	Bacterial regulatory proteins, luxR family
CH46_66	PF00367	phosphotransferase system, EIIB
CH46_660	PF00375	Sodium:dicarboxylate symporter family
CH46_661	PF00501	AMP-binding enzyme
CH46_661	PF13193	AMP-binding enzyme C-terminal domain
CH46_661	PF16177	CH46_661
CH46_662	PF04341	CH46_662
CH46_663	PF00474	Sodium:solute symporter family
CH46_664	PF12715	Abhydrolase family
CH46_665	PF00665	Integrase core domain
CH46_665	PF02796	Helix-turn-helix domain of resolvase
CH46_668	PF01695	IstB-like ATP binding protein
CH46_669	PF00132	Bacterial transferase hexapeptide (six repeats)
CH46_67	PF02264	LamB porin
CH46_670	PF01488	Shikimate / quinate 5-dehydrogenase
CH46_670	PF08501	Shikimate dehydrogenase substrate binding domain
CH46_671	PF01300	Telomere recombination
CH46_672	PF01396	CH46_672
CH46_673	PF04361	CH46_673
CH46_674	PF02481	DNA recombination-mediator protein A
CH46_675	PF01327	Polypeptide deformylase
CH46_676	PF00551	Formyl transferase
CH46_676	PF02911	Formyl transferase, C-terminal domain
CH46_677	PF01029	NusB family
CH46_677	PF01189	NOL1/NOP2/sun family
CH46_678	PF02080	TrkA-C domain
CH46_678	PF02254	TrkA-N domain
CH46_679	PF01741	Large-conductance mechanosensitive channel, MscL
CH46_68	PF00356	Bacterial regulatory proteins, lacI family
CH46_68	PF13377	Periplasmic binding protein-like domain
CH46_680	PF03889	CH46_680
CH46_681	PF13411	MerR HTH family regulatory protein
CH46_682	PF01196	Ribosomal protein L17
CH46_683	PF01000	RNA polymerase Rpb3/RpoA insert domain
CH46_683	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
CH46_683	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
CH46_684	PF00163	Ribosomal protein S4/S9 N-terminal domain
CH46_684	PF01479	S4 domain
CH46_685	PF00411	Ribosomal protein S11
CH46_686	PF00416	Ribosomal protein S13/S18
CH46_687	PF00444	Ribosomal protein L36
CH46_688	PF00344	SecY translocase
CH46_689	PF00828	Ribosomal protein L18e/L15
CH46_69	PF01055	Glycosyl hydrolases family 31
CH46_69	PF13802	Galactose mutarotase-like
CH46_69	PF17137	CH46_69
CH46_690	PF00327	Ribosomal protein L30p/L7e
CH46_691	PF00333	Ribosomal protein S5, N-terminal domain
CH46_691	PF03719	Ribosomal protein S5, C-terminal domain
CH46_692	PF00861	Ribosomal L18p/L5e family
CH46_693	PF00347	Ribosomal protein L6
CH46_694	PF00410	Ribosomal protein S8
CH46_695	PF00253	Ribosomal protein S14p/S29e
CH46_696	PF00281	Ribosomal protein L5
CH46_696	PF00673	ribosomal L5P family C-terminus
CH46_697	PF00467	KOW motif
CH46_697	PF17136	CH46_697
CH46_698	PF00238	Ribosomal protein L14p/L23e
CH46_699	PF00366	Ribosomal protein S17
CH46_7	PF03695	Uncharacterised protein family (UPF0149)
CH46_70	PF07690	Major Facilitator Superfamily
CH46_700	PF00831	Ribosomal L29 protein
CH46_701	PF00252	Ribosomal protein L16p/L10e
CH46_702	PF00189	Ribosomal protein S3, C-terminal domain
CH46_702	PF07650	KH domain
CH46_703	PF00237	Ribosomal protein L22p/L17e
CH46_704	PF00203	Ribosomal protein S19
CH46_705	PF00181	Ribosomal Proteins L2, RNA binding domain
CH46_705	PF03947	Ribosomal Proteins L2, C-terminal domain
CH46_706	PF00276	Ribosomal protein L23
CH46_707	PF00573	Ribosomal protein L4/L1 family
CH46_708	PF00297	Ribosomal protein L3
CH46_709	PF00338	Ribosomal protein S10p/S20e
CH46_71	PF00356	Bacterial regulatory proteins, lacI family
CH46_71	PF13377	Periplasmic binding protein-like domain
CH46_710	PF00210	Ferritin-like domain
CH46_711	PF04324	BFD-like [2Fe-2S] binding domain
CH46_712	PF01797	Transposase IS200 like
CH46_713	PF00009	Elongation factor Tu GTP binding domain
CH46_713	PF03143	Elongation factor Tu C-terminal domain
CH46_713	PF03144	Elongation factor Tu domain 2
CH46_714	PF00009	Elongation factor Tu GTP binding domain
CH46_714	PF00679	Elongation factor G C-terminus
CH46_714	PF03144	Elongation factor Tu domain 2
CH46_714	PF03764	Elongation factor G, domain IV
CH46_714	PF14492	Elongation Factor G, domain II
CH46_715	PF00177	Ribosomal protein S7p/S5e
CH46_716	PF00164	Ribosomal protein S12/S23
CH46_717	PF04077	DsrH like protein
CH46_718	PF02635	DsrE/DsrF-like family
CH46_719	PF02635	DsrE/DsrF-like family
CH46_72	PF01965	DJ-1/PfpI family
CH46_720	PF08348	CH46_720
CH46_720	PF13309	CH46_720
CH46_721	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
CH46_721	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
CH46_722	PF04102	SlyX
CH46_723	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
CH46_724	PF09526	CH46_724
CH46_725	PF00999	Sodium/hydrogen exchanger family
CH46_725	PF02254	TrkA-N domain
CH46_726	PF02525	Flavodoxin-like fold
CH46_727	PF00005	ABC transporter
CH46_728	PF00005	ABC transporter
CH46_728	PF12848	ABC transporter
CH46_729	PF00535	Glycosyl transferase family 2
CH46_730	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
CH46_731	PF02668	Taurine catabolism dioxygenase TauD, TfdA family
CH46_732	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_733	PF00005	ABC transporter
CH46_734	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
CH46_735	PF01810	CH46_735
CH46_736	PF00561	alpha/beta hydrolase fold
CH46_737	PF06794	Uncharacterised protein family (UPF0270)
CH46_738	PF00485	Phosphoribulokinase / Uridine kinase family
CH46_739	PF06836	CH46_739
CH46_74	PF01116	Fructose-bisphosphate aldolase class-II
CH46_740	PF02566	OsmC-like protein
CH46_741	PF00027	Cyclic nucleotide-binding domain
CH46_741	PF00325	Bacterial regulatory proteins, crp family
CH46_742	PF12805	CH46_742
CH46_742	PF13515	CH46_742
CH46_743	PF00202	Aminotransferase class-III
CH46_744	PF00117	Glutamine amidotransferase class-I
CH46_745	PF05872	CH46_745
CH46_746	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
CH46_747	PF02056	Family 4 glycosyl hydrolase
CH46_748	PF00665	Integrase core domain
CH46_748	PF02796	Helix-turn-helix domain of resolvase
CH46_749	PF01695	IstB-like ATP binding protein
CH46_75	PF10022	CH46_75
CH46_750	PF11975	Family 4 glycosyl hydrolase C-terminal domain
CH46_751	PF00356	Bacterial regulatory proteins, lacI family
CH46_751	PF13377	Periplasmic binding protein-like domain
CH46_752	PF00593	TonB dependent receptor
CH46_752	PF07715	TonB-dependent Receptor Plug Domain
CH46_753	PF07690	Major Facilitator Superfamily
CH46_754	PF07969	Amidohydrolase family
CH46_755	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
CH46_755	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
CH46_755	PF04324	BFD-like [2Fe-2S] binding domain
CH46_755	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH46_756	PF13806	Rieske-like [2Fe-2S] domain
CH46_757	PF01226	Formate/nitrite transporter
CH46_758	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
CH46_758	PF10414	Sirohaem synthase dimerisation region
CH46_758	PF13241	Putative NAD(P)-binding
CH46_758	PF14824	Sirohaem biosynthesis protein central
CH46_759	PF00579	tRNA synthetases class I (W and Y)
CH46_76	PF00884	Sulfatase
CH46_760	PF13419	Haloacid dehalogenase-like hydrolase
CH46_761	PF00834	Ribulose-phosphate 3 epimerase family
CH46_762	PF02086	D12 class N6 adenine-specific DNA methyltransferase
CH46_763	PF05036	Sporulation related domain
CH46_764	PF01761	3-dehydroquinate synthase
CH46_765	PF01202	Shikimate kinase
CH46_766	PF00263	CH46_766
CH46_766	PF03958	Bacterial type II/III secretion system short domain
CH46_767	PF10748	CH46_767
CH46_769	PF05137	CH46_769
CH46_77	PF04055	Radical SAM superfamily
CH46_77	PF13186	Iron-sulfur cluster-binding domain
CH46_770	PF11104	Type IV pilus assembly protein PilM;
CH46_771	PF00905	Penicillin binding protein transpeptidase domain
CH46_771	PF00912	Transglycosylase
CH46_771	PF17092	CH46_771
CH46_772	PF00293	NUDIX domain
CH46_774	PF07095	Intracellular growth attenuator protein IgaA
CH46_775	PF13419	Haloacid dehalogenase-like hydrolase
CH46_776	PF01479	S4 domain
CH46_777	PF01430	Hsp33 protein
CH46_778	PF01293	Phosphoenolpyruvate carboxykinase
CH46_779	PF00512	His Kinase A (phospho-acceptor) domain
CH46_779	PF00672	HAMP domain
CH46_779	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_78	PF07470	Glycosyl Hydrolase Family 88
CH46_780	PF00072	Response regulator receiver domain
CH46_780	PF00486	Transcriptional regulatory protein, C terminal
CH46_781	PF01272	Transcription elongation factor, GreA/GreB, C-term
CH46_781	PF03449	Transcription elongation factor, N-terminal
CH46_782	PF00575	S1 RNA binding domain
CH46_782	PF09371	Tex-like protein N-terminal domain
CH46_782	PF12836	Helix-hairpin-helix motif
CH46_782	PF16921	CH46_782
CH46_783	PF04023	FeoA domain
CH46_784	PF02421	Ferrous iron transport protein B
CH46_784	PF07664	CH46_784
CH46_784	PF07670	Nucleoside recognition
CH46_785	PF09012	FeoC like transcriptional regulator
CH46_786	PF07338	Protein of unknown function (DUF1471)
CH46_787	PF00561	alpha/beta hydrolase fold
CH46_788	PF00156	Phosphoribosyl transferase domain
CH46_789	PF01106	NifU-like domain
CH46_789	PF01521	Iron-sulphur cluster biosynthesis
CH46_79	PF13561	Enoyl-(Acyl carrier protein) reductase
CH46_790	PF02446	4-alpha-glucanotransferase
CH46_791	PF00343	Carbohydrate phosphorylase
CH46_793	PF00196	Bacterial regulatory proteins, luxR family
CH46_794	PF00581	Rhodanese-like domain
CH46_795	PF01694	Rhomboid family
CH46_795	PF12122	Protein of unknown function (DUF3582)
CH46_796	PF00455	CH46_796
CH46_796	PF08220	DeoR-like helix-turn-helix domain
CH46_797	PF13518	Helix-turn-helix domain
CH46_798	PF00665	Integrase core domain
CH46_798	PF13276	CH46_798
CH46_799	PF02219	Methylenetetrahydrofolate reductase
CH46_8	PF00557	Metallopeptidase family M24
CH46_8	PF05195	Aminopeptidase P, N-terminal domain
CH46_80	PF01979	Amidohydrolase family
CH46_800	PF00696	Amino acid kinase family
CH46_800	PF00742	Homoserine dehydrogenase
CH46_800	PF03447	Homoserine dehydrogenase, NAD binding domain
CH46_801	PF01053	Cys/Met metabolism PLP-dependent enzyme
CH46_802	PF01053	Cys/Met metabolism PLP-dependent enzyme
CH46_803	PF01340	Met Apo-repressor, MetJ
CH46_804	PF05360	CH46_804
CH46_805	PF01197	Ribosomal protein L31
CH46_806	PF00270	DEAD/DEAH box helicase
CH46_806	PF00271	Helicase conserved C-terminal domain
CH46_808	PF00356	Bacterial regulatory proteins, lacI family
CH46_808	PF13377	Periplasmic binding protein-like domain
CH46_809	PF05036	Sporulation related domain
CH46_81	PF03610	PTS system fructose IIA component
CH46_810	PF00227	Proteasome subunit
CH46_811	PF00004	ATPase family associated with various cellular activities (AAA)
CH46_811	PF07724	AAA domain (Cdc48 subfamily)
CH46_811	PF10431	C-terminal, D2-small domain, of ClpB protein
CH46_812	PF01040	UbiA prenyltransferase family
CH46_813	PF03737	Demethylmenaquinone methyltransferase
CH46_814	PF14016	CH46_814
CH46_816	PF13437	HlyD family secretion protein
CH46_817	PF00664	ABC transporter transmembrane region
CH46_817	PF03412	Peptidase C39 family
CH46_818	PF00665	Integrase core domain
CH46_818	PF02796	Helix-turn-helix domain of resolvase
CH46_819	PF01695	IstB-like ATP binding protein
CH46_82	PF03613	CH46_82
CH46_820	PF00005	ABC transporter
CH46_820	PF00664	ABC transporter transmembrane region
CH46_821	PF01797	Transposase IS200 like
CH46_822	PF06005	Protein of unknown function (DUF904)
CH46_823	PF00230	Major intrinsic protein
CH46_824	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
CH46_824	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
CH46_825	PF03320	Bacterial fructose-1,6-bisphosphatase, glpX-encoded
CH46_826	PF00175	Oxidoreductase NAD-binding domain
CH46_826	PF00970	Oxidoreductase FAD-binding domain
CH46_827	PF05656	CH46_827
CH46_828	PF07305	CH46_828
CH46_829	PF00121	Triosephosphate isomerase
CH46_83	PF03609	CH46_83
CH46_830	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH46_830	PF03466	LysR substrate binding domain
CH46_831	PF02585	GlcNAc-PI de-N-acetylase
CH46_832	PF03737	Demethylmenaquinone methyltransferase
CH46_833	PF00939	Sodium:sulfate symporter transmembrane region
CH46_834	PF13531	Bacterial extracellular solute-binding protein
CH46_835	PF13531	Bacterial extracellular solute-binding protein
CH46_837	PF00365	Phosphofructokinase
CH46_838	PF01545	Cation efflux family
CH46_838	PF16916	CH46_838
CH46_839	PF04754	CH46_839
CH46_84	PF03830	PTS system sorbose subfamily IIB component
CH46_840	PF07813	LTXXQ motif family protein
CH46_841	PF00072	Response regulator receiver domain
CH46_841	PF00486	Transcriptional regulatory protein, C terminal
CH46_842	PF00512	His Kinase A (phospho-acceptor) domain
CH46_842	PF00672	HAMP domain
CH46_842	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_842	PF16527	CH46_842
CH46_843	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
CH46_843	PF02805	Metal binding domain of Ada
CH46_843	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
CH46_843	PF12833	Helix-turn-helix domain
CH46_844	PF00588	SpoU rRNA Methylase family
CH46_845	PF00132	Bacterial transferase hexapeptide (six repeats)
CH46_845	PF06426	Serine acetyltransferase, N-terminal
CH46_846	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
CH46_846	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
CH46_847	PF02556	Preprotein translocase subunit SecB
CH46_848	PF00462	Glutaredoxin
CH46_849	PF00581	Rhodanese-like domain
CH46_85	PF01380	SIS domain
CH46_850	PF01676	Metalloenzyme superfamily
CH46_850	PF06415	BPG-independent PGAM N-terminus (iPGM_N)
CH46_851	PF01551	Peptidase family M23
CH46_852	PF04748	Divergent polysaccharide deacetylase
CH46_853	PF04748	Divergent polysaccharide deacetylase
CH46_854	PF00107	Zinc-binding dehydrogenase
CH46_854	PF08240	Alcohol dehydrogenase GroES-like domain
CH46_855	PF00155	Aminotransferase class I and II
CH46_856	PF01370	NAD dependent epimerase/dehydratase family
CH46_857	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
CH46_858	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
CH46_859	PF00534	Glycosyl transferases group 1
CH46_859	PF04413	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
CH46_86	PF08013	Tagatose 6 phosphate kinase
CH46_860	PF00535	Glycosyl transferase family 2
CH46_861	PF01467	Cytidylyltransferase
CH46_862	PF01149	Formamidopyrimidine-DNA glycosylase N-terminal domain
CH46_862	PF06827	Zinc finger found in FPG and IleRS
CH46_862	PF06831	Formamidopyrimidine-DNA glycosylase H2TH domain
CH46_863	PF00471	Ribosomal protein L33
CH46_864	PF00830	Ribosomal L28 family
CH46_865	PF04002	RadC-like JAB domain
CH46_866	PF02441	Flavoprotein
CH46_866	PF04127	DNA / pantothenate metabolism flavoprotein
CH46_867	PF00692	dUTPase
CH46_868	PF00440	Bacterial regulatory proteins, tetR family
CH46_869	PF00156	Phosphoribosyl transferase domain
CH46_87	PF00455	CH46_87
CH46_87	PF08220	DeoR-like helix-turn-helix domain
CH46_870	PF01138	3' exoribonuclease family, domain 1
CH46_870	PF03725	3' exoribonuclease family, domain 2
CH46_871	PF03755	CH46_871
CH46_871	PF08340	CH46_871
CH46_872	PF03458	CH46_872
CH46_873	PF01653	NAD-dependent DNA ligase adenylation domain
CH46_873	PF03120	NAD-dependent DNA ligase OB-fold domain
CH46_874	PF00625	Guanylate kinase
CH46_875	PF01192	RNA polymerase Rpb6
CH46_876	PF02824	TGS domain
CH46_876	PF04607	Region found in RelA / SpoT proteins
CH46_876	PF13291	ACT domain
CH46_876	PF13328	HD domain
CH46_877	PF00588	SpoU rRNA Methylase family
CH46_877	PF12105	SpoU, rRNA methylase, C-terminal
CH46_878	PF00270	DEAD/DEAH box helicase
CH46_878	PF00271	Helicase conserved C-terminal domain
CH46_878	PF17191	CH46_878
CH46_879	PF03616	CH46_879
CH46_88	PF00884	Sulfatase
CH46_880	PF00860	Permease family
CH46_882	PF00583	Acetyltransferase (GNAT) family
CH46_882	PF09500	Putative thioesterase (yiiD_Cterm)
CH46_883	PF00665	Integrase core domain
CH46_883	PF02796	Helix-turn-helix domain of resolvase
CH46_884	PF01695	IstB-like ATP binding protein
CH46_885	PF02580	D-Tyr-tRNA(Tyr) deacylase
CH46_886	PF03631	CH46_886
CH46_887	PF13419	Haloacid dehalogenase-like hydrolase
CH46_888	PF00009	Elongation factor Tu GTP binding domain
CH46_888	PF00679	Elongation factor G C-terminus
CH46_888	PF03144	Elongation factor Tu domain 2
CH46_889	PF00120	Glutamine synthetase, catalytic domain
CH46_889	PF03951	Glutamine synthetase, beta-Grasp domain
CH46_89	PF01797	Transposase IS200 like
CH46_890	PF00512	His Kinase A (phospho-acceptor) domain
CH46_890	PF00989	PAS fold
CH46_890	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_891	PF00072	Response regulator receiver domain
CH46_891	PF00158	Sigma-54 interaction domain
CH46_891	PF02954	Bacterial regulatory protein, Fis family
CH46_892	PF04055	Radical SAM superfamily
CH46_892	PF06969	HemN C-terminal domain
CH46_893	PF04220	CH46_893
CH46_894	PF01926	50S ribosome-binding GTPase
CH46_895	PF01797	Transposase IS200 like
CH46_896	PF00476	DNA polymerase family A
CH46_896	PF01367	5'-3' exonuclease, C-terminal SAM fold
CH46_896	PF01612	3'-5' exonuclease
CH46_896	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
CH46_897	PF01323	DSBA-like thioredoxin domain
CH46_898	PF01636	Phosphotransferase enzyme family
CH46_899	PF06288	Protein of unknown function (DUF1040)
CH46_9	PF01494	FAD binding domain
CH46_90	PF00665	Integrase core domain
CH46_90	PF02796	Helix-turn-helix domain of resolvase
CH46_900	PF12804	MobA-like NTP transferase domain
CH46_901	PF03205	Molybdopterin guanine dinucleotide synthesis protein B
CH46_902	PF00872	CH46_902
CH46_907	PF00392	Bacterial regulatory proteins, gntR family
CH46_907	PF07729	FCD domain
CH46_909	PF07690	Major Facilitator Superfamily
CH46_91	PF01695	IstB-like ATP binding protein
CH46_910	PF00294	pfkB family carbohydrate kinase
CH46_911	PF05025	RbsD / FucU transport protein family
CH46_912	PF02705	CH46_912
CH46_913	PF07728	AAA domain (dynein-related subfamily)
CH46_913	PF12592	Protein of unknown function (DUF3763)
CH46_914	PF05762	VWA domain containing CoxE-like protein
CH46_915	PF03590	Aspartate-ammonia ligase
CH46_916	PF01037	AsnC family
CH46_916	PF13412	Winged helix-turn-helix DNA-binding
CH46_917	PF00258	Flavodoxin
CH46_918	PF01134	Glucose inhibited division protein A
CH46_918	PF13932	GidA associated domain 3
CH46_919	PF02527	rRNA small subunit methyltransferase G
CH46_92	PF02278	Polysaccharide lyase family 8, super-sandwich domain
CH46_92	PF02884	Polysaccharide lyase family 8, C-terminal beta-sandwich domain
CH46_92	PF09092	Lyase, N terminal
CH46_92	PF09093	Lyase, catalytic
CH46_920	PF03899	CH46_920
CH46_921	PF00119	ATP synthase A chain
CH46_922	PF00137	ATP synthase subunit C
CH46_923	PF00430	ATP synthase B/B' CF(0)
CH46_924	PF00213	ATP synthase delta (OSCP) subunit
CH46_925	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CH46_925	PF00306	ATP synthase alpha/beta chain, C terminal domain
CH46_925	PF02874	ATP synthase alpha/beta family, beta-barrel domain
CH46_926	PF00231	ATP synthase
CH46_927	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CH46_927	PF02874	ATP synthase alpha/beta family, beta-barrel domain
CH46_928	PF00401	ATP synthase, Delta/Epsilon chain, long alpha-helix domain
CH46_928	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
CH46_929	PF00132	Bacterial transferase hexapeptide (six repeats)
CH46_929	PF12804	MobA-like NTP transferase domain
CH46_93	PF03797	Autotransporter beta-domain
CH46_930	PF01380	SIS domain
CH46_930	PF13522	Glutamine amidotransferase domain
CH46_931	PF12849	PBP superfamily domain
CH46_932	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_933	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_934	PF00005	ABC transporter
CH46_935	PF01895	PhoU domain
CH46_936	PF04519	CH46_936
CH46_937	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH46_938	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_939	PF00528	Binding-protein-dependent transport system inner membrane component
CH46_94	PF16946	CH46_94
CH46_940	PF13419	Haloacid dehalogenase-like hydrolase
CH46_941	PF00860	Permease family
CH46_944	PF07055	Enoyl reductase FAD binding domain
CH46_944	PF12241	Trans-2-enoyl-CoA reductase catalytic region
CH46_944	PF12242	NAD(P)H binding domain of trans-2-enoyl-CoA reductase
CH46_945	PF01926	50S ribosome-binding GTPase
CH46_945	PF10396	GTP-binding protein TrmE N-terminus
CH46_945	PF12631	Catalytic cysteine-containing C-terminus of GTPase, MnmE
CH46_946	PF02096	60Kd inner membrane protein
CH46_946	PF14849	YidC periplasmic domain
CH46_947	PF01809	CH46_947
CH46_948	PF00825	Ribonuclease P
CH46_949	PF00468	Ribosomal protein L34
CH46_951	PF00308	Bacterial dnaA  protein
CH46_951	PF08299	Bacterial dnaA protein helix-turn-helix
CH46_951	PF11638	DnaA N-terminal domain
CH46_952	PF00712	DNA polymerase III beta subunit, N-terminal domain
CH46_952	PF02767	DNA polymerase III beta subunit, central domain
CH46_952	PF02768	DNA polymerase III beta subunit, C-terminal domain
CH46_953	PF02463	RecF/RecN/SMC N terminal domain
CH46_954	PF00204	DNA gyrase B
CH46_954	PF00986	DNA gyrase B subunit, carboxyl terminus
CH46_954	PF01751	Toprim domain
CH46_954	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH46_955	PF08282	haloacid dehalogenase-like hydrolase
CH46_956	PF00665	Integrase core domain
CH46_956	PF02796	Helix-turn-helix domain of resolvase
CH46_957	PF01695	IstB-like ATP binding protein
CH46_958	PF00665	Integrase core domain
CH46_958	PF13276	CH46_958
CH46_96	PF00484	Carbonic anhydrase
CH46_960	PF13518	Helix-turn-helix domain
CH46_961	PF02423	Ornithine cyclodeaminase/mu-crystallin family
CH46_962	PF00291	Pyridoxal-phosphate dependent enzyme
CH46_964	PF07676	WD40-like Beta Propeller Repeat
CH46_965	PF07119	CH46_965
CH46_966	PF00011	Hsp20/alpha crystallin family
CH46_967	PF00011	Hsp20/alpha crystallin family
CH46_968	PF02080	TrkA-C domain
CH46_968	PF06826	CH46_968
CH46_969	PF00155	Aminotransferase class I and II
CH46_971	PF00128	Alpha amylase, catalytic domain
CH46_972	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
CH46_972	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
CH46_974	PF00691	OmpA family
CH46_974	PF13488	CH46_974
CH46_975	PF13673	Acetyltransferase (GNAT) domain
CH46_976	PF03352	Methyladenine glycosylase
CH46_978	PF02091	Glycyl-tRNA synthetase alpha subunit
CH46_979	PF02092	CH46_979
CH46_979	PF05746	DALR anticodon binding domain
CH46_98	PF11356	Type IV pilus biogenesis
CH46_980	PF11254	CH46_980
CH46_981	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
CH46_981	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
CH46_981	PF02378	Phosphotransferase system, EIIC
CH46_982	PF01232	Mannitol dehydrogenase Rossmann domain
CH46_982	PF08125	Mannitol dehydrogenase C-terminal domain
CH46_983	PF05068	Mannitol repressor
CH46_985	PF10928	Protein of unknown function (DUF2810)
CH46_986	PF10517	CH46_986
CH46_989	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CH46_989	PF00672	HAMP domain
CH46_989	PF16591	CH46_989
CH46_99	PF00263	CH46_99
CH46_99	PF03958	Bacterial type II/III secretion system short domain
CH46_990	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
CH46_990	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
CH46_991	PF02634	FdhD/NarQ family
CH46_992	PF00384	Molybdopterin oxidoreductase
CH46_992	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
CH46_993	PF00384	Molybdopterin oxidoreductase
CH46_993	PF01568	Molydopterin dinucleotide binding domain
CH46_994	PF09163	Formate dehydrogenase N, transmembrane
CH46_994	PF13247	4Fe-4S dicluster domain
CH46_995	PF01292	Prokaryotic cytochrome b561
CH46_996	PF04216	Protein involved in formate dehydrogenase formation
CH46_997	PF03841	L-seryl-tRNA selenium transferase
CH46_997	PF12390	CH46_997