CH46_100 SM00382 ATPases associated with a variety of cellular activities CH46_1017 SM00382 ATPases associated with a variety of cellular activities CH46_1019 SM00342 helix_turn_helix, arabinose operon control protein CH46_1026 SM00530 Helix-turn-helix XRE-family like proteins CH46_1028 SM00382 ATPases associated with a variety of cellular activities CH46_1042 SM00421 helix_turn_helix, Lux Regulon CH46_1042 SM00448 cheY-homologous receiver domain CH46_1047 SM00387 Histidine kinase-like ATPases CH46_1051 SM00912 haemagglutination activity domain CH46_1057 SM00382 ATPases associated with a variety of cellular activities CH46_1058 SM00382 ATPases associated with a variety of cellular activities CH46_1060 SM00052 Putative diguanylate phosphodiesterase CH46_1060 SM00267 diguanylate cyclase CH46_1069 SM00052 Putative diguanylate phosphodiesterase CH46_1073 SM00869 Autotransporter beta-domain CH46_1084 SM00235 Zinc-dependent metalloprotease CH46_1085 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH46_1088 SM01321 CH46_1088 CH46_1091 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH46_1091 SM00387 Histidine kinase-like ATPases CH46_1091 SM00388 His Kinase A (phosphoacceptor) domain CH46_1091 SM00448 cheY-homologous receiver domain CH46_1092 SM00382 ATPases associated with a variety of cellular activities CH46_1098 SM00448 cheY-homologous receiver domain CH46_1098 SM00862 Transcriptional regulatory protein, C terminal CH46_1101 SM00354 helix_turn _helix lactose operon repressor CH46_1108 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH46_1113 SM00257 Lysin motif CH46_1113 SM00634 Bacterial Ig-like domain (group 1) CH46_1116 SM00642 Alpha-amylase domain CH46_1117 SM00642 Alpha-amylase domain CH46_112 SM00862 Transcriptional regulatory protein, C terminal CH46_1127 SM00382 ATPases associated with a variety of cellular activities CH46_1131 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH46_1137 SM00382 ATPases associated with a variety of cellular activities CH46_115 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH46_115 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH46_115 SM00319 Homologues of the ligand binding domain of Tar CH46_1157 SM00382 ATPases associated with a variety of cellular activities CH46_116 SM00849 Metallo-beta-lactamase superfamily CH46_1162 SM00382 ATPases associated with a variety of cellular activities CH46_1179 SM00507 HNH nucleases CH46_1192 SM00487 DEAD-like helicases superfamily CH46_1192 SM00490 helicase superfamily c-terminal domain CH46_1194 SM00357 Cold shock protein domain CH46_1194 SM00382 ATPases associated with a variety of cellular activities CH46_1194 SM00959 Rho termination factor, N-terminal domain CH46_1198 SM00984 UDP binding domain CH46_120 SM00354 helix_turn _helix lactose operon repressor CH46_1213 SM01321 CH46_1213 CH46_1219 SM01219 CH46_1219 CH46_123 SM00563 Phosphate acyltransferases CH46_1233 SM00341 Helicase and RNase D C-terminal CH46_1233 SM00487 DEAD-like helicases superfamily CH46_1233 SM00490 helicase superfamily c-terminal domain CH46_1233 SM00956 CH46_1233 CH46_1252 SM00382 ATPases associated with a variety of cellular activities CH46_1252 SM00962 SRP54-type protein, GTPase domain CH46_1252 SM00963 SRP54-type protein, helical bundle domain CH46_1253 SM00382 ATPases associated with a variety of cellular activities CH46_1256 SM01321 CH46_1256 CH46_1261 SM00382 ATPases associated with a variety of cellular activities CH46_1262 SM00382 ATPases associated with a variety of cellular activities CH46_1273 SM00382 ATPases associated with a variety of cellular activities CH46_128 SM00927 DNA mismatch repair enzyme MutH CH46_1293 SM00382 ATPases associated with a variety of cellular activities CH46_1295 SM01004 Delta-aminolevulinic acid dehydratase CH46_1296 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH46_1296 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH46_130 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH46_1303 SM01321 CH46_1303 CH46_1318 SM00382 ATPases associated with a variety of cellular activities CH46_1325 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH46_1325 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH46_1326 SM00649 Ribosomal protein L11/L12 CH46_1331 SM00663 RNA polymerase I subunit A N-terminus CH46_1332 SM01321 CH46_1332 CH46_1333 SM00876 Biotin and Thiamin Synthesis associated domain CH46_1345 SM00411 bacterial (prokaryotic) histone like domain CH46_1347 SM01209 CH46_1347 CH46_1347 SM01210 CH46_1347 CH46_1348 SM00798 AICARFT/IMPCHase bienzyme CH46_1348 SM00851 MGS-like domain CH46_1364 SM00346 helix_turn_helix isocitrate lyase regulation CH46_1365 SM01018 B12 binding domain CH46_1366 SM00912 haemagglutination activity domain CH46_1375 SM00382 ATPases associated with a variety of cellular activities CH46_1392 SM00382 ATPases associated with a variety of cellular activities CH46_1392 SM01086 C-terminal, D2-small domain, of ClpB protein CH46_1403 SM00860 SMI1 / KNR4 family CH46_1406 SM00530 Helix-turn-helix XRE-family like proteins CH46_1414 SM00342 helix_turn_helix, arabinose operon control protein CH46_1417 SM01133 CH46_1417 CH46_1419 SM00062 Bacterial periplasmic substrate-binding proteins CH46_1422 SM00382 ATPases associated with a variety of cellular activities CH46_1429 SM00382 ATPases associated with a variety of cellular activities CH46_1437 SM01321 CH46_1437 CH46_1438 SM00357 Cold shock protein domain CH46_1439 SM00357 Cold shock protein domain CH46_1441 SM00849 Metallo-beta-lactamase superfamily CH46_1445 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH46_1445 SM00895 CH46_1445 CH46_1453 SM00878 Biotin carboxylase C-terminal domain CH46_1458 SM00829 Enoylreductase CH46_1459 SM00052 Putative diguanylate phosphodiesterase CH46_1459 SM00267 diguanylate cyclase CH46_146 SM00382 ATPases associated with a variety of cellular activities CH46_1464 SM00316 Ribosomal protein S1-like RNA-binding domain CH46_147 SM00382 ATPases associated with a variety of cellular activities CH46_1491 SM00642 Alpha-amylase domain CH46_1493 SM00354 helix_turn _helix lactose operon repressor CH46_1509 SM00382 ATPases associated with a variety of cellular activities CH46_1513 SM00116 Domain in cystathionine beta-synthase and other proteins. CH46_1515 SM00382 ATPases associated with a variety of cellular activities CH46_1522 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH46_1523 SM01321 CH46_1523 CH46_1524 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH46_153 SM00869 Autotransporter beta-domain CH46_1534 SM00729 Elongator protein 3, MiaB family, Radical SAM CH46_1535 SM00073 Histidine Phosphotransfer domain CH46_1535 SM00091 PAS domain CH46_1535 SM00387 Histidine kinase-like ATPases CH46_1535 SM00388 His Kinase A (phosphoacceptor) domain CH46_1535 SM00448 cheY-homologous receiver domain CH46_1538 SM00749 bacterial OsmY and nodulation domain CH46_1546 SM00382 ATPases associated with a variety of cellular activities CH46_1553 SM01321 CH46_1553 CH46_1562 SM00116 Domain in cystathionine beta-synthase and other proteins. CH46_1562 SM01091 Transporter associated domain CH46_1580 SM00387 Histidine kinase-like ATPases CH46_1580 SM00388 His Kinase A (phosphoacceptor) domain CH46_1581 SM00448 cheY-homologous receiver domain CH46_1581 SM00862 Transcriptional regulatory protein, C terminal CH46_1584 SM01103 CH46_1584 CH46_1586 SM00382 ATPases associated with a variety of cellular activities CH46_1593 SM00316 Ribosomal protein S1-like RNA-binding domain CH46_1593 SM00322 K homology RNA-binding domain CH46_1597 SM01387 CH46_1597 CH46_160 SM00354 helix_turn _helix lactose operon repressor CH46_1600 SM00316 Ribosomal protein S1-like RNA-binding domain CH46_1600 SM00322 K homology RNA-binding domain CH46_1601 SM00028 Tetratricopeptide repeats CH46_1602 SM00487 DEAD-like helicases superfamily CH46_1602 SM00490 helicase superfamily c-terminal domain CH46_1604 SM00530 Helix-turn-helix XRE-family like proteins CH46_1620 SM00382 ATPases associated with a variety of cellular activities CH46_1623 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH46_1624 SM00849 Metallo-beta-lactamase superfamily CH46_1625 SM00072 Guanylate kinase homologues. CH46_1627 SM00382 ATPases associated with a variety of cellular activities CH46_1628 SM00382 ATPases associated with a variety of cellular activities CH46_1633 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH46_1633 SM00866 CH46_1633 CH46_1637 SM00382 ATPases associated with a variety of cellular activities CH46_1638 SM00382 ATPases associated with a variety of cellular activities CH46_1656 SM00382 ATPases associated with a variety of cellular activities CH46_1662 SM01240 CH46_1662 CH46_1667 SM00644 CH46_1667 CH46_1670 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH46_1670 SM00895 CH46_1670 CH46_1674 SM01321 CH46_1674 CH46_1683 SM00947 Carbonic anhydrase CH46_1684 SM00382 ATPases associated with a variety of cellular activities CH46_1696 SM00487 DEAD-like helicases superfamily CH46_1696 SM00490 helicase superfamily c-terminal domain CH46_1696 SM00847 Helicase associated domain (HA2) Add an annotation CH46_1698 SM00382 ATPases associated with a variety of cellular activities CH46_1707 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH46_1708 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH46_1709 SM00073 Histidine Phosphotransfer domain CH46_1709 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH46_1709 SM00387 Histidine kinase-like ATPases CH46_1709 SM00388 His Kinase A (phosphoacceptor) domain CH46_1709 SM00448 cheY-homologous receiver domain CH46_1710 SM00954 Region found in RelA / SpoT proteins CH46_1713 SM01192 CH46_1713 CH46_1713 SM01193 CH46_1713 CH46_1720 SM00382 ATPases associated with a variety of cellular activities CH46_1739 SM00257 Lysin motif CH46_1741 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CH46_1741 SM00534 ATPase domain of DNA mismatch repair MUTS family CH46_1743 SM00829 Enoylreductase CH46_1746 SM01120 CH46_1746 CH46_1749 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH46_1752 SM00062 Bacterial periplasmic substrate-binding proteins CH46_1753 SM01235 CH46_1753 CH46_1765 SM00382 ATPases associated with a variety of cellular activities CH46_1766 SM01321 CH46_1766 CH46_1768 SM00420 helix_turn_helix, Deoxyribose operon repressor CH46_1768 SM01134 CH46_1768 CH46_1769 SM01007 Class II Aldolase and Adducin N-terminal domain CH46_1770 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH46_1779 SM00382 ATPases associated with a variety of cellular activities CH46_1782 SM00861 Transketolase, pyrimidine binding domain CH46_1788 SM00382 ATPases associated with a variety of cellular activities CH46_1790 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH46_180 SM00862 Transcriptional regulatory protein, C terminal CH46_1800 SM01321 CH46_1800 CH46_1801 SM01091 Transporter associated domain CH46_1803 SM00382 ATPases associated with a variety of cellular activities CH46_1803 SM00962 SRP54-type protein, GTPase domain CH46_1803 SM00963 SRP54-type protein, helical bundle domain CH46_1808 SM01321 CH46_1808 CH46_1813 SM00448 cheY-homologous receiver domain CH46_1813 SM00850 LytTr DNA-binding domain CH46_1815 SM00830 Chorismate mutase type II CH46_1820 SM00830 Chorismate mutase type II CH46_1821 SM01321 CH46_1821 CH46_1824 SM00363 S4 RNA-binding domain CH46_1826 SM00382 ATPases associated with a variety of cellular activities CH46_1826 SM01086 C-terminal, D2-small domain, of ClpB protein CH46_1834 SM00155 Phospholipase D. Active site motifs. CH46_1835 SM00881 CoA binding domain CH46_1836 SM01144 CH46_1836 CH46_1838 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH46_1841 SM00347 helix_turn_helix multiple antibiotic resistance protein CH46_1849 SM00062 Bacterial periplasmic substrate-binding proteins CH46_1852 SM00382 ATPases associated with a variety of cellular activities CH46_1854 SM00382 ATPases associated with a variety of cellular activities CH46_1860 SM00710 Parallel beta-helix repeats CH46_1860 SM00912 haemagglutination activity domain CH46_1869 SM00900 CH46_1869 CH46_1879 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CH46_1884 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH46_1895 SM00382 ATPases associated with a variety of cellular activities CH46_1898 SM00448 cheY-homologous receiver domain CH46_1898 SM00862 Transcriptional regulatory protein, C terminal CH46_1899 SM00091 PAS domain CH46_1899 SM00387 Histidine kinase-like ATPases CH46_1899 SM00388 His Kinase A (phosphoacceptor) domain CH46_190 SM01321 CH46_190 CH46_1903 SM00642 Alpha-amylase domain CH46_1907 SM01321 CH46_1907 CH46_1912 SM01323 CH46_1912 CH46_1923 SM01321 CH46_1923 CH46_1924 SM00861 Transketolase, pyrimidine binding domain CH46_1927 SM00981 CH46_1927 CH46_1944 SM00382 ATPases associated with a variety of cellular activities CH46_1944 SM00994 ClpX C4-type zinc finger CH46_1944 SM01086 C-terminal, D2-small domain, of ClpB protein CH46_1945 SM00382 ATPases associated with a variety of cellular activities CH46_1945 SM00464 Found in ATP-dependent protease La (LON) CH46_1946 SM00411 bacterial (prokaryotic) histone like domain CH46_1954 SM00344 helix_turn_helix ASNC type CH46_1955 SM00382 ATPases associated with a variety of cellular activities CH46_1956 SM00382 ATPases associated with a variety of cellular activities CH46_1957 SM00938 Nitrogen regulatory protein P-II CH46_196 SM00858 CH46_196 CH46_1975 SM00382 ATPases associated with a variety of cellular activities CH46_1977 SM00382 ATPases associated with a variety of cellular activities CH46_1979 SM00493 CH46_1979 CH46_1980 SM00387 Histidine kinase-like ATPases CH46_200 SM00382 ATPases associated with a variety of cellular activities CH46_2015 SM00422 helix_turn_helix, mercury resistance CH46_2017 SM00244 prohibitin homologues CH46_2019 SM00822 CH46_2019 CH46_2021 SM00382 ATPases associated with a variety of cellular activities CH46_2024 SM01001 AIR carboxylase CH46_2027 SM00840 CH46_2027 CH46_2029 SM01321 CH46_2029 CH46_2038 SM01130 CH46_2038 CH46_2040 SM01321 CH46_2040 CH46_205 SM00382 ATPases associated with a variety of cellular activities CH46_2052 SM00382 ATPases associated with a variety of cellular activities CH46_2059 SM00421 helix_turn_helix, Lux Regulon CH46_2059 SM00448 cheY-homologous receiver domain CH46_2062 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH46_2066 SM00919 Malic enzyme, NAD binding domain CH46_2066 SM01274 CH46_2066 CH46_2072 SM00869 Autotransporter beta-domain CH46_2076 SM01130 CH46_2076 CH46_2078 SM00364 Leucine-rich repeats, bacterial type CH46_2086 SM00382 ATPases associated with a variety of cellular activities CH46_2089 SM00448 cheY-homologous receiver domain CH46_2089 SM00862 Transcriptional regulatory protein, C terminal CH46_2090 SM00387 Histidine kinase-like ATPases CH46_2090 SM00388 His Kinase A (phosphoacceptor) domain CH46_2091 SM00327 von Willebrand factor (vWF) type A domain CH46_2097 SM00450 Rhodanese Homology Domain CH46_2098 SM00382 ATPases associated with a variety of cellular activities CH46_2102 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH46_2102 SM00387 Histidine kinase-like ATPases CH46_2102 SM00388 His Kinase A (phosphoacceptor) domain CH46_2103 SM00382 ATPases associated with a variety of cellular activities CH46_2106 SM01321 CH46_2106 CH46_2112 SM00771 ZipA, C-terminal domain (FtsZ-binding) CH46_2113 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH46_2113 SM00292 breast cancer carboxy-terminal domain CH46_2113 SM00532 Ligase N family CH46_2119 SM01321 CH46_2119 CH46_2142 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH46_2146 SM00382 ATPases associated with a variety of cellular activities CH46_2150 SM00421 helix_turn_helix, Lux Regulon CH46_2159 SM00382 ATPases associated with a variety of cellular activities CH46_2159 SM01086 C-terminal, D2-small domain, of ClpB protein CH46_2173 SM00382 ATPases associated with a variety of cellular activities CH46_2176 SM01321 CH46_2176 CH46_2182 SM00062 Bacterial periplasmic substrate-binding proteins CH46_2183 SM01211 CH46_2183 CH46_2187 SM01321 CH46_2187 CH46_2188 SM00387 Histidine kinase-like ATPases CH46_2188 SM00388 His Kinase A (phosphoacceptor) domain CH46_2190 SM00382 ATPases associated with a variety of cellular activities CH46_2190 SM00448 cheY-homologous receiver domain CH46_2192 SM00938 Nitrogen regulatory protein P-II CH46_22 SM00448 cheY-homologous receiver domain CH46_22 SM00862 Transcriptional regulatory protein, C terminal CH46_220 SM01321 CH46_220 CH46_2202 SM01321 CH46_2202 CH46_2209 SM00271 DnaJ molecular chaperone homology domain CH46_221 SM01321 CH46_221 CH46_2217 SM00869 Autotransporter beta-domain CH46_2218 SM00247 Beta/gamma crystallins CH46_2219 SM00562 CH46_2219 CH46_2221 SM00028 Tetratricopeptide repeats CH46_2222 SM00530 Helix-turn-helix XRE-family like proteins CH46_2226 SM00564 beta-propeller repeat CH46_2231 SM00116 Domain in cystathionine beta-synthase and other proteins. CH46_2231 SM01240 CH46_2231 CH46_2233 SM01321 CH46_2233 CH46_2248 SM00046 Diacylglycerol kinase catalytic domain (presumed) CH46_2251 SM00448 cheY-homologous receiver domain CH46_2251 SM00862 Transcriptional regulatory protein, C terminal CH46_2252 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH46_2252 SM00388 His Kinase A (phosphoacceptor) domain CH46_2257 SM00382 ATPases associated with a variety of cellular activities CH46_2258 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH46_2264 SM00924 MgtE intracellular N domain CH46_2269 SM00382 ATPases associated with a variety of cellular activities CH46_2276 SM01321 CH46_2276 CH46_2287 SM00563 Phosphate acyltransferases CH46_2289 SM00195 Dual specificity phosphatase, catalytic domain CH46_2289 SM00404 Protein tyrosine phosphatase, catalytic domain motif CH46_23 SM00387 Histidine kinase-like ATPases CH46_23 SM00388 His Kinase A (phosphoacceptor) domain CH46_2301 SM01217 CH46_2301 CH46_2308 SM00869 Autotransporter beta-domain CH46_2322 SM00052 Putative diguanylate phosphodiesterase CH46_2324 SM00382 ATPases associated with a variety of cellular activities CH46_2327 SM00062 Bacterial periplasmic substrate-binding proteins CH46_2336 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH46_2339 SM00342 helix_turn_helix, arabinose operon control protein CH46_2344 SM00825 Beta-ketoacyl synthase CH46_2352 SM00463 Small MutS-related domain CH46_2353 SM00855 Phosphoglycerate mutase family CH46_2367 SM00382 ATPases associated with a variety of cellular activities CH46_2386 SM00358 Double-stranded RNA binding motif CH46_2386 SM00535 Ribonuclease III family CH46_2396 SM00487 DEAD-like helicases superfamily CH46_2396 SM00490 helicase superfamily c-terminal domain CH46_2398 SM00248 ankyrin repeats CH46_240 SM00342 helix_turn_helix, arabinose operon control protein CH46_2402 SM00986 Uracil DNA glycosylase superfamily CH46_2402 SM00987 UreE urease accessory protein, C-terminal domain CH46_2407 SM00797 Allophanate hydrolase subunit 2 CH46_2408 SM00796 Allophanate hydrolase subunit 1 CH46_2418 SM00387 Histidine kinase-like ATPases CH46_2418 SM00388 His Kinase A (phosphoacceptor) domain CH46_2419 SM00448 cheY-homologous receiver domain CH46_2419 SM00862 Transcriptional regulatory protein, C terminal CH46_2428 SM00342 helix_turn_helix, arabinose operon control protein CH46_2441 SM00988 UreE urease accessory protein, N-terminal domain CH46_2446 SM00382 ATPases associated with a variety of cellular activities CH46_2447 SM00382 ATPases associated with a variety of cellular activities CH46_2451 SM00357 Cold shock protein domain CH46_246 SM00563 Phosphate acyltransferases CH46_2463 SM00382 ATPases associated with a variety of cellular activities CH46_247 SM00434 DNA Topoisomerase IV CH46_2479 SM01081 Putative carbohydrate binding domain CH46_2482 SM01321 CH46_2482 CH46_2495 SM00729 Elongator protein 3, MiaB family, Radical SAM CH46_2498 SM00116 Domain in cystathionine beta-synthase and other proteins. CH46_2498 SM01091 Transporter associated domain CH46_250 SM00387 Histidine kinase-like ATPases CH46_250 SM00433 TopoisomeraseII CH46_2500 SM00062 Bacterial periplasmic substrate-binding proteins CH46_2503 SM00382 ATPases associated with a variety of cellular activities CH46_2514 SM00936 Penicillin-binding protein 5, C-terminal domain CH46_2517 SM00729 Elongator protein 3, MiaB family, Radical SAM CH46_2520 SM00357 Cold shock protein domain CH46_2522 SM00421 helix_turn_helix, Lux Regulon CH46_2527 SM00382 ATPases associated with a variety of cellular activities CH46_2534 SM00382 ATPases associated with a variety of cellular activities CH46_2544 SM01359 CH46_2544 CH46_2544 SM01360 CH46_2544 CH46_2549 SM00354 helix_turn _helix lactose operon repressor CH46_2556 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH46_2563 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH46_2564 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH46_2564 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH46_2577 SM00354 helix_turn _helix lactose operon repressor CH46_2589 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH46_2598 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH46_2598 SM00091 PAS domain CH46_2598 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH46_2599 SM00382 ATPases associated with a variety of cellular activities CH46_2601 SM00062 Bacterial periplasmic substrate-binding proteins CH46_2601 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH46_2611 SM00829 Enoylreductase CH46_2613 SM00382 ATPases associated with a variety of cellular activities CH46_2615 SM00354 helix_turn _helix lactose operon repressor CH46_2617 SM01329 CH46_2617 CH46_2622 SM00912 haemagglutination activity domain CH46_2630 SM00382 ATPases associated with a variety of cellular activities CH46_2632 SM00354 helix_turn _helix lactose operon repressor CH46_2653 SM00421 helix_turn_helix, Lux Regulon CH46_2656 SM00450 Rhodanese Homology Domain CH46_2658 SM00421 helix_turn_helix, Lux Regulon CH46_266 SM01118 CH46_266 CH46_2666 SM00382 ATPases associated with a variety of cellular activities CH46_267 SM00287 Bacterial SH3 domain homologues CH46_2672 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH46_2677 SM00873 B3/4 domain CH46_2677 SM00874 tRNA synthetase B5 domain CH46_2677 SM00896 Ferredoxin-fold anticodon binding domain CH46_2678 SM00411 bacterial (prokaryotic) histone like domain CH46_268 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH46_2682 SM00382 ATPases associated with a variety of cellular activities CH46_270 SM00905 Dihydroneopterin aldolase CH46_2702 SM00382 ATPases associated with a variety of cellular activities CH46_2707 SM00382 ATPases associated with a variety of cellular activities CH46_2708 SM01321 CH46_2708 CH46_271 SM01207 CH46_271 CH46_2719 SM00354 helix_turn _helix lactose operon repressor CH46_2725 SM00479 CH46_2725 CH46_2733 SM00347 helix_turn_helix multiple antibiotic resistance protein CH46_2738 SM00363 S4 RNA-binding domain CH46_274 SM00400 zinc finger CH46_274 SM00493 CH46_274 CH46_274 SM00766 DNA primase DnaG DnaB-binding CH46_2741 SM00382 ATPases associated with a variety of cellular activities CH46_2747 SM00382 ATPases associated with a variety of cellular activities CH46_2748 SM00382 ATPases associated with a variety of cellular activities CH46_2752 SM01321 CH46_2752 CH46_2753 SM00382 ATPases associated with a variety of cellular activities CH46_2760 SM00953 CH46_2760 CH46_2762 SM00091 PAS domain CH46_2762 SM00382 ATPases associated with a variety of cellular activities CH46_2763 SM01321 CH46_2763 CH46_2765 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH46_2769 SM00422 helix_turn_helix, mercury resistance CH46_2773 SM00890 Domain of unknown function CH46_2785 SM00382 ATPases associated with a variety of cellular activities CH46_2785 SM00487 DEAD-like helicases superfamily CH46_2785 SM00490 helicase superfamily c-terminal domain CH46_2785 SM00847 Helicase associated domain (HA2) Add an annotation CH46_2787 SM00530 Helix-turn-helix XRE-family like proteins CH46_2788 SM00020 Trypsin-like serine protease CH46_2791 SM00867 YceI-like domain CH46_2794 SM01321 CH46_2794 CH46_2796 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH46_2796 SM00387 Histidine kinase-like ATPases CH46_2796 SM00388 His Kinase A (phosphoacceptor) domain CH46_2797 SM00448 cheY-homologous receiver domain CH46_2797 SM00862 Transcriptional regulatory protein, C terminal CH46_2801 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CH46_2801 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CH46_2804 SM00100 Cyclic nucleotide-monophosphate binding domain CH46_2804 SM00419 helix_turn_helix, cAMP Regulatory protein CH46_2806 SM00098 Alkaline phosphatase homologues CH46_282 SM00382 ATPases associated with a variety of cellular activities CH46_2821 SM00354 helix_turn _helix lactose operon repressor CH46_2832 SM00530 Helix-turn-helix XRE-family like proteins CH46_2840 SM00530 Helix-turn-helix XRE-family like proteins CH46_2856 SM00342 helix_turn_helix, arabinose operon control protein CH46_2858 SM00382 ATPases associated with a variety of cellular activities CH46_2863 SM00382 ATPases associated with a variety of cellular activities CH46_2871 SM00342 helix_turn_helix, arabinose operon control protein CH46_2873 SM00900 CH46_2873 CH46_2875 SM00478 endonuclease III CH46_2875 SM00525 CH46_2875 CH46_2878 SM00357 Cold shock protein domain CH46_2878 SM00955 CH46_2878 CH46_2883 SM01007 Class II Aldolase and Adducin N-terminal domain CH46_2886 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CH46_2888 SM00028 Tetratricopeptide repeats CH46_2890 SM00014 Acid phosphatase homologues CH46_2895 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH46_2895 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH46_2895 SM00493 CH46_2895 CH46_2898 SM00822 CH46_2898 CH46_29 SM00937 CH46_29 CH46_2900 SM00363 S4 RNA-binding domain CH46_2902 SM00481 DNA polymerase alpha chain like domain CH46_2909 SM00749 bacterial OsmY and nodulation domain CH46_2923 SM00155 Phospholipase D. Active site motifs. CH46_2926 SM00382 ATPases associated with a variety of cellular activities CH46_2927 SM00382 ATPases associated with a variety of cellular activities CH46_2934 SM00382 ATPases associated with a variety of cellular activities CH46_2936 SM00528 Domain in histone-like proteins of HNS family CH46_2937 SM00984 UDP binding domain CH46_2938 SM00448 cheY-homologous receiver domain CH46_2948 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH46_2948 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH46_2948 SM00493 CH46_2948 CH46_2952 SM00870 CH46_2952 CH46_2956 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH46_2959 SM00763 PrkA AAA domain CH46_2967 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH46_2978 SM00060 Fibronectin type 3 domain CH46_2984 SM01040 BRO family, N-terminal domain CH46_2988 SM00232 JAB/MPN domain CH46_2990 SM01321 CH46_2990 CH46_2994 SM00635 Bacterial Ig-like domain 2 CH46_3000 SM00635 Bacterial Ig-like domain 2 CH46_3018 SM01040 BRO family, N-terminal domain CH46_302 SM01217 CH46_302 CH46_3035 SM00341 Helicase and RNase D C-terminal CH46_3035 SM00474 3'-5' exonuclease CH46_3039 SM00487 DEAD-like helicases superfamily CH46_3039 SM00491 CH46_3039 CH46_3049 SM00257 Lysin motif CH46_3051 SM00382 ATPases associated with a variety of cellular activities CH46_3053 SM00382 ATPases associated with a variety of cellular activities CH46_3054 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH46_3065 SM00836 DALR anticodon binding domain CH46_3065 SM01016 Arginyl tRNA synthetase N terminal dom CH46_3066 SM00912 haemagglutination activity domain CH46_307 SM00354 helix_turn _helix lactose operon repressor CH46_3074 SM00481 DNA polymerase alpha chain like domain CH46_3079 SM01321 CH46_3079 CH46_3088 SM00382 ATPases associated with a variety of cellular activities CH46_309 SM00382 ATPases associated with a variety of cellular activities CH46_3090 SM01321 CH46_3090 CH46_3095 SM00937 CH46_3095 CH46_3099 SM01400 CH46_3099 CH46_3105 SM00450 Rhodanese Homology Domain CH46_3112 SM00448 cheY-homologous receiver domain CH46_3112 SM00862 Transcriptional regulatory protein, C terminal CH46_3113 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH46_3113 SM00387 Histidine kinase-like ATPases CH46_3113 SM00388 His Kinase A (phosphoacceptor) domain CH46_312 SM00869 Autotransporter beta-domain CH46_3124 SM00671 Sel1-like repeats. CH46_3126 SM00671 Sel1-like repeats. CH46_3142 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH46_3142 SM00866 CH46_3142 CH46_3145 SM00382 ATPases associated with a variety of cellular activities CH46_3155 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH46_3156 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH46_3156 SM00387 Histidine kinase-like ATPases CH46_3169 SM00382 ATPases associated with a variety of cellular activities CH46_3177 SM00420 helix_turn_helix, Deoxyribose operon repressor CH46_3177 SM01134 CH46_3177 CH46_318 SM00912 haemagglutination activity domain CH46_3191 SM00421 helix_turn_helix, Lux Regulon CH46_3191 SM00448 cheY-homologous receiver domain CH46_320 SM00327 von Willebrand factor (vWF) type A domain CH46_3203 SM00382 ATPases associated with a variety of cellular activities CH46_3204 SM00382 ATPases associated with a variety of cellular activities CH46_3205 SM00342 helix_turn_helix, arabinose operon control protein CH46_3206 SM00823 Phosphopantetheine attachment site CH46_3207 SM00822 CH46_3207 CH46_3207 SM00823 Phosphopantetheine attachment site CH46_3207 SM00824 Thioesterase CH46_3207 SM00825 Beta-ketoacyl synthase CH46_3207 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH46_3219 SM00382 ATPases associated with a variety of cellular activities CH46_322 SM00327 von Willebrand factor (vWF) type A domain CH46_3223 SM00382 ATPases associated with a variety of cellular activities CH46_3228 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH46_3228 SM00866 CH46_3228 CH46_323 SM00327 von Willebrand factor (vWF) type A domain CH46_325 SM00220 Serine/Threonine protein kinases, catalytic domain CH46_3257 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH46_3257 SM00465 GIY-YIG type nucleases (URI domain) CH46_3258 SM00421 helix_turn_helix, Lux Regulon CH46_3258 SM00448 cheY-homologous receiver domain CH46_3275 SM00382 ATPases associated with a variety of cellular activities CH46_3277 SM00062 Bacterial periplasmic substrate-binding proteins CH46_3277 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH46_3285 SM00342 helix_turn_helix, arabinose operon control protein CH46_3288 SM00478 endonuclease III CH46_329 SM00869 Autotransporter beta-domain CH46_3295 SM00382 ATPases associated with a variety of cellular activities CH46_3309 SM00382 ATPases associated with a variety of cellular activities CH46_3313 SM01007 Class II Aldolase and Adducin N-terminal domain CH46_3317 SM00047 Lysozyme subfamily 2 CH46_3326 SM00858 CH46_3326 CH46_3329 SM00634 Bacterial Ig-like domain (group 1) CH46_3330 SM01321 CH46_3330 CH46_334 SM01321 CH46_334 CH46_3345 SM01022 CH46_3345 CH46_3347 SM00487 DEAD-like helicases superfamily CH46_3347 SM00490 helicase superfamily c-terminal domain CH46_3353 SM00903 Flavin reductase like domain CH46_336 SM00858 CH46_336 CH46_3363 SM00347 helix_turn_helix multiple antibiotic resistance protein CH46_3364 SM01091 Transporter associated domain CH46_3371 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH46_3371 SM00091 PAS domain CH46_3371 SM00267 diguanylate cyclase CH46_3375 SM00357 Cold shock protein domain CH46_3385 SM00342 helix_turn_helix, arabinose operon control protein CH46_3387 SM00382 ATPases associated with a variety of cellular activities CH46_3388 SM00090 RIO-like kinase CH46_3393 SM00382 ATPases associated with a variety of cellular activities CH46_3395 SM00354 helix_turn _helix lactose operon repressor CH46_340 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH46_340 SM00895 CH46_340 CH46_3403 SM00382 ATPases associated with a variety of cellular activities CH46_3408 SM00644 CH46_3408 CH46_3409 SM00346 helix_turn_helix isocitrate lyase regulation CH46_3419 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH46_3419 SM00245 tail specific protease CH46_3420 SM00945 ProQ/FINO family CH46_3424 SM00972 Spore Coat Protein U domain CH46_3425 SM00972 Spore Coat Protein U domain CH46_3426 SM00972 Spore Coat Protein U domain CH46_3429 SM00972 Spore Coat Protein U domain CH46_3431 SM01022 CH46_3431 CH46_3433 SM00382 ATPases associated with a variety of cellular activities CH46_3439 SM01005 Alanine racemase, C-terminal domain CH46_3444 SM00644 CH46_3444 CH46_3446 SM00448 cheY-homologous receiver domain CH46_3447 SM00448 cheY-homologous receiver domain CH46_3448 SM00138 Methyltransferase, chemotaxis proteins CH46_3451 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH46_3451 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH46_3451 SM00319 Homologues of the ligand binding domain of Tar CH46_3454 SM00869 Autotransporter beta-domain CH46_3459 SM00260 Two component signalling adaptor domain CH46_3460 SM00073 Histidine Phosphotransfer domain CH46_3460 SM00260 Two component signalling adaptor domain CH46_3460 SM00387 Histidine kinase-like ATPases CH46_3460 SM01231 CH46_3460 CH46_3465 SM00831 Cation transporter/ATPase, N-terminus CH46_3467 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH46_3467 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH46_3467 SM00319 Homologues of the ligand binding domain of Tar CH46_3470 SM00357 Cold shock protein domain CH46_3471 SM01038 Beta galactosidase small chain CH46_3472 SM00829 Enoylreductase CH46_3474 SM00344 helix_turn_helix ASNC type CH46_3481 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH46_3481 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH46_3483 SM00354 helix_turn _helix lactose operon repressor CH46_3484 SM01329 CH46_3484 CH46_3491 SM00448 cheY-homologous receiver domain CH46_3491 SM00862 Transcriptional regulatory protein, C terminal CH46_3492 SM00387 Histidine kinase-like ATPases CH46_3492 SM00388 His Kinase A (phosphoacceptor) domain CH46_3493 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CH46_3498 SM00382 ATPases associated with a variety of cellular activities CH46_35 SM00530 Helix-turn-helix XRE-family like proteins CH46_3500 SM00487 DEAD-like helicases superfamily CH46_3500 SM00490 helicase superfamily c-terminal domain CH46_3500 SM00982 CH46_3500 CH46_3500 SM01058 CarD-like/TRCF domain CH46_3503 SM00382 ATPases associated with a variety of cellular activities CH46_351 SM00382 ATPases associated with a variety of cellular activities CH46_3515 SM01321 CH46_3515 CH46_3522 SM01321 CH46_3522 CH46_3523 SM00825 Beta-ketoacyl synthase CH46_3525 SM00822 CH46_3525 CH46_3526 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH46_353 SM00957 SecA DEAD-like domain CH46_353 SM00958 SecA preprotein cross-linking domain CH46_3532 SM01321 CH46_3532 CH46_3533 SM00363 S4 RNA-binding domain CH46_3534 SM00316 Ribosomal protein S1-like RNA-binding domain CH46_3549 SM00421 helix_turn_helix, Lux Regulon CH46_3549 SM00448 cheY-homologous receiver domain CH46_3559 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH46_3565 SM00634 Bacterial Ig-like domain (group 1) CH46_357 SM00864 Tubulin/FtsZ family, GTPase domain CH46_357 SM00865 Tubulin/FtsZ family, C-terminal domain CH46_3572 SM00382 ATPases associated with a variety of cellular activities CH46_3573 SM00382 ATPases associated with a variety of cellular activities CH46_358 SM00842 Cell division protein FtsA CH46_3585 SM01350 CH46_3585 CH46_3593 SM00382 ATPases associated with a variety of cellular activities CH46_3595 SM01006 Siderophore biosynthesis protein domain CH46_3599 SM01091 Transporter associated domain CH46_3607 SM00382 ATPases associated with a variety of cellular activities CH46_3615 SM00919 Malic enzyme, NAD binding domain CH46_3615 SM01274 CH46_3615 CH46_3618 SM00382 ATPases associated with a variety of cellular activities CH46_3624 SM00829 Enoylreductase CH46_3629 SM00382 ATPases associated with a variety of cellular activities CH46_3631 SM00852 Probable molybdopterin binding domain CH46_3635 SM00382 ATPases associated with a variety of cellular activities CH46_3654 SM00382 ATPases associated with a variety of cellular activities CH46_3654 SM01086 C-terminal, D2-small domain, of ClpB protein CH46_3662 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH46_3670 SM00825 Beta-ketoacyl synthase CH46_3682 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH46_3683 SM00992 Hemimethylated DNA-binding protein YccV like CH46_3684 SM00881 CoA binding domain CH46_3686 SM00851 MGS-like domain CH46_3693 SM01321 CH46_3693 CH46_37 SM00530 Helix-turn-helix XRE-family like proteins CH46_3703 SM00825 Beta-ketoacyl synthase CH46_3704 SM01321 CH46_3704 CH46_3708 SM00382 ATPases associated with a variety of cellular activities CH46_3709 SM00981 CH46_3709 CH46_3718 SM00849 Metallo-beta-lactamase superfamily CH46_3721 SM01321 CH46_3721 CH46_3729 SM00357 Cold shock protein domain CH46_373 SM00354 helix_turn _helix lactose operon repressor CH46_3730 SM01150 CH46_3730 CH46_3732 SM00382 ATPases associated with a variety of cellular activities CH46_3733 SM00849 Metallo-beta-lactamase superfamily CH46_3734 SM00411 bacterial (prokaryotic) histone like domain CH46_3736 SM00316 Ribosomal protein S1-like RNA-binding domain CH46_374 SM01321 CH46_374 CH46_3742 SM00870 CH46_3742 CH46_3750 SM00382 ATPases associated with a variety of cellular activities CH46_3753 SM00843 CH46_3753 CH46_3754 SM00344 helix_turn_helix ASNC type CH46_3756 SM00382 ATPases associated with a variety of cellular activities CH46_3757 SM00382 ATPases associated with a variety of cellular activities CH46_3759 SM00316 Ribosomal protein S1-like RNA-binding domain CH46_3760 SM01321 CH46_3760 CH46_3761 SM00382 ATPases associated with a variety of cellular activities CH46_3761 SM01086 C-terminal, D2-small domain, of ClpB protein CH46_3763 SM00357 Cold shock protein domain CH46_3764 SM00382 ATPases associated with a variety of cellular activities CH46_3776 SM00830 Chorismate mutase type II CH46_3777 SM00382 ATPases associated with a variety of cellular activities CH46_3778 SM00062 Bacterial periplasmic substrate-binding proteins CH46_3778 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH46_3784 SM00382 ATPases associated with a variety of cellular activities CH46_3788 SM00244 prohibitin homologues CH46_3790 SM00062 Bacterial periplasmic substrate-binding proteins CH46_3791 SM00382 ATPases associated with a variety of cellular activities CH46_3798 SM00382 ATPases associated with a variety of cellular activities CH46_38 SM00778 Zinc-binding domain of primase-helicase CH46_38 SM00885 D5 N terminal like CH46_380 SM01321 CH46_380 CH46_3805 SM00014 Acid phosphatase homologues CH46_3806 SM01133 CH46_3806 CH46_3807 SM00420 helix_turn_helix, Deoxyribose operon repressor CH46_3807 SM01134 CH46_3807 CH46_3809 SM00936 Penicillin-binding protein 5, C-terminal domain CH46_381 SM00917 LeuA allosteric (dimerisation) domain CH46_3811 SM00382 ATPases associated with a variety of cellular activities CH46_3811 SM00930 CH46_3811 CH46_3817 SM00382 ATPases associated with a variety of cellular activities CH46_382 SM01329 CH46_382 CH46_3824 SM00518 AP endonuclease family 2 CH46_3829 SM00862 Transcriptional regulatory protein, C terminal CH46_3835 SM00382 ATPases associated with a variety of cellular activities CH46_3845 SM00841 Elongation factor P, C-terminal CH46_3845 SM01185 CH46_3845 CH46_3848 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH46_3848 SM00895 CH46_3848 CH46_3850 SM00833 Cobalamin synthesis protein cobW C-terminal domain CH46_3851 SM00014 Acid phosphatase homologues CH46_3854 SM00052 Putative diguanylate phosphodiesterase CH46_3858 SM00382 ATPases associated with a variety of cellular activities CH46_3861 SM00363 S4 RNA-binding domain CH46_3862 SM00487 DEAD-like helicases superfamily CH46_3862 SM00490 helicase superfamily c-terminal domain CH46_3864 SM01321 CH46_3864 CH46_387 SM00382 ATPases associated with a variety of cellular activities CH46_3893 SM00420 helix_turn_helix, Deoxyribose operon repressor CH46_3893 SM01134 CH46_3893 CH46_3894 SM01007 Class II Aldolase and Adducin N-terminal domain CH46_3897 SM00530 Helix-turn-helix XRE-family like proteins CH46_3901 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH46_3901 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH46_3907 SM01321 CH46_3907 CH46_3908 SM01321 CH46_3908 CH46_3914 SM00421 helix_turn_helix, Lux Regulon CH46_3914 SM00448 cheY-homologous receiver domain CH46_3915 SM00387 Histidine kinase-like ATPases CH46_3915 SM00388 His Kinase A (phosphoacceptor) domain CH46_3915 SM00448 cheY-homologous receiver domain CH46_3916 SM00434 DNA Topoisomerase IV CH46_3922 SM00852 Probable molybdopterin binding domain CH46_3925 SM01060 CH46_3925 CH46_3926 SM00487 DEAD-like helicases superfamily CH46_3926 SM00488 CH46_3926 CH46_3926 SM00491 CH46_3926 CH46_393 SM00382 ATPases associated with a variety of cellular activities CH46_3933 SM00382 ATPases associated with a variety of cellular activities CH46_3937 SM00450 Rhodanese Homology Domain CH46_3940 SM00382 ATPases associated with a variety of cellular activities CH46_3949 SM00382 ATPases associated with a variety of cellular activities CH46_395 SM00486 DNA polymerase type-B family CH46_3952 SM00507 HNH nucleases CH46_3953 SM01118 CH46_3953 CH46_3959 SM01321 CH46_3959 CH46_396 SM00487 DEAD-like helicases superfamily CH46_396 SM00490 helicase superfamily c-terminal domain CH46_3968 SM01321 CH46_3968 CH46_3973 SM00729 Elongator protein 3, MiaB family, Radical SAM CH46_3977 SM00487 DEAD-like helicases superfamily CH46_3977 SM00490 helicase superfamily c-terminal domain CH46_3978 SM00382 ATPases associated with a variety of cellular activities CH46_3982 SM00729 Elongator protein 3, MiaB family, Radical SAM CH46_3982 SM00876 Biotin and Thiamin Synthesis associated domain CH46_3986 SM00382 ATPases associated with a variety of cellular activities CH46_3991 SM00382 ATPases associated with a variety of cellular activities CH46_4000 SM00855 Phosphoglycerate mutase family CH46_4002 SM00382 ATPases associated with a variety of cellular activities CH46_4021 SM00881 CoA binding domain CH46_4024 SM00861 Transketolase, pyrimidine binding domain CH46_4037 SM01321 CH46_4037 CH46_4044 SM00778 Zinc-binding domain of primase-helicase CH46_4051 SM00382 ATPases associated with a variety of cellular activities CH46_4056 SM00479 CH46_4056 CH46_4059 SM00849 Metallo-beta-lactamase superfamily CH46_4060 SM00257 Lysin motif CH46_4070 SM00382 ATPases associated with a variety of cellular activities CH46_4070 SM00930 CH46_4070 CH46_4078 SM01322 CH46_4078 CH46_408 SM00382 ATPases associated with a variety of cellular activities CH46_408 SM01086 C-terminal, D2-small domain, of ClpB protein CH46_4082 SM00977 TilS substrate C-terminal domain CH46_4085 SM00481 DNA polymerase alpha chain like domain CH46_4091 SM00935 Outer membrane protein (OmpH-like) CH46_4093 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH46_4102 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH46_4108 SM01321 CH46_4108 CH46_4112 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH46_4112 SM00475 5'-3' exonuclease CH46_4120 SM00925 MltA specific insert domain CH46_4123 SM00646 CH46_4123 CH46_4132 SM00382 ATPases associated with a variety of cellular activities CH46_4134 SM00823 Phosphopantetheine attachment site CH46_4134 SM00825 Beta-ketoacyl synthase CH46_4138 SM00364 Leucine-rich repeats, bacterial type CH46_4138 SM00369 Leucine-rich repeats, typical (most populated) subfamily CH46_4139 SM00364 Leucine-rich repeats, bacterial type CH46_4140 SM00364 Leucine-rich repeats, bacterial type CH46_4141 SM00869 Autotransporter beta-domain CH46_4147 SM00052 Putative diguanylate phosphodiesterase CH46_4147 SM00091 PAS domain CH46_4147 SM00267 diguanylate cyclase CH46_4154 SM01006 Siderophore biosynthesis protein domain CH46_4161 SM00421 helix_turn_helix, Lux Regulon CH46_4174 SM00382 ATPases associated with a variety of cellular activities CH46_4174 SM01086 C-terminal, D2-small domain, of ClpB protein CH46_418 SM00271 DnaJ molecular chaperone homology domain CH46_4188 SM00382 ATPases associated with a variety of cellular activities CH46_4194 SM00478 endonuclease III CH46_4194 SM00525 CH46_4194 CH46_4201 SM00729 Elongator protein 3, MiaB family, Radical SAM CH46_4203 SM01152 CH46_4203 CH46_4207 SM00382 ATPases associated with a variety of cellular activities CH46_4210 SM00732 Likely ribonuclease with RNase H fold. CH46_4215 SM00731 SprT homologues. CH46_422 SM00650 Ribosomal RNA adenine dimethylases CH46_4221 SM00861 Transketolase, pyrimidine binding domain CH46_4222 SM01321 CH46_4222 CH46_4224 SM00382 ATPases associated with a variety of cellular activities CH46_4225 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH46_4235 SM00481 DNA polymerase alpha chain like domain CH46_4237 SM00382 ATPases associated with a variety of cellular activities CH46_4244 SM00232 JAB/MPN domain CH46_4249 SM00635 Bacterial Ig-like domain 2 CH46_4255 SM00635 Bacterial Ig-like domain 2 CH46_426 SM01321 CH46_426 CH46_4264 SM00382 ATPases associated with a variety of cellular activities CH46_4265 SM00470 ParB-like nuclease domain CH46_4266 SM00470 ParB-like nuclease domain CH46_4267 SM00487 DEAD-like helicases superfamily CH46_4267 SM00490 helicase superfamily c-terminal domain CH46_4276 SM01321 CH46_4276 CH46_4282 SM00062 Bacterial periplasmic substrate-binding proteins CH46_4290 SM00244 prohibitin homologues CH46_4294 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH46_4294 SM00475 5'-3' exonuclease CH46_4301 SM00382 ATPases associated with a variety of cellular activities CH46_4303 SM00470 ParB-like nuclease domain CH46_431 SM00851 MGS-like domain CH46_431 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH46_4311 SM00382 ATPases associated with a variety of cellular activities CH46_4312 SM00470 ParB-like nuclease domain CH46_4316 SM00857 Resolvase, N terminal domain CH46_4318 SM01321 CH46_4318 CH46_432 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CH46_4321 SM00155 Phospholipase D. Active site motifs. CH46_4325 SM00342 helix_turn_helix, arabinose operon control protein CH46_4334 SM00364 Leucine-rich repeats, bacterial type CH46_434 SM01321 CH46_434 CH46_4349 SM00382 ATPases associated with a variety of cellular activities CH46_4358 SM00342 helix_turn_helix, arabinose operon control protein CH46_4374 SM00194 Protein tyrosine phosphatase, catalytic domain CH46_4374 SM00404 Protein tyrosine phosphatase, catalytic domain motif CH46_4377 SM00220 Serine/Threonine protein kinases, catalytic domain CH46_439 SM00904 Riboflavin kinase CH46_4396 SM00857 Resolvase, N terminal domain CH46_4405 SM00382 ATPases associated with a variety of cellular activities CH46_4413 SM00470 ParB-like nuclease domain CH46_4427 SM00530 Helix-turn-helix XRE-family like proteins CH46_443 SM00271 DnaJ molecular chaperone homology domain CH46_448 SM00852 Probable molybdopterin binding domain CH46_456 SM00448 cheY-homologous receiver domain CH46_456 SM00862 Transcriptional regulatory protein, C terminal CH46_459 SM00855 Phosphoglycerate mutase family CH46_460 SM00342 helix_turn_helix, arabinose operon control protein CH46_460 SM00871 Bacterial transcription activator, effector binding domain CH46_464 SM00831 Cation transporter/ATPase, N-terminus CH46_466 SM00267 diguanylate cyclase CH46_469 SM00382 ATPases associated with a variety of cellular activities CH46_471 SM00530 Helix-turn-helix XRE-family like proteins CH46_472 SM00382 ATPases associated with a variety of cellular activities CH46_477 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CH46_479 SM01133 CH46_479 CH46_484 SM00749 bacterial OsmY and nodulation domain CH46_491 SM00267 diguanylate cyclase CH46_502 SM00382 ATPases associated with a variety of cellular activities CH46_506 SM01133 CH46_506 CH46_512 SM00342 helix_turn_helix, arabinose operon control protein CH46_527 SM00382 ATPases associated with a variety of cellular activities CH46_529 SM00382 ATPases associated with a variety of cellular activities CH46_533 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH46_534 SM00316 Ribosomal protein S1-like RNA-binding domain CH46_534 SM00357 Cold shock protein domain CH46_534 SM00955 CH46_534 CH46_536 SM00788 Adenylosuccinate synthetase CH46_538 SM00244 prohibitin homologues CH46_539 SM00244 prohibitin homologues CH46_543 SM00853 MutL C terminal dimerisation domain CH46_543 SM01340 CH46_543 CH46_544 SM00257 Lysin motif CH46_544 SM00646 CH46_544 CH46_550 SM00479 CH46_550 CH46_559 SM01321 CH46_559 CH46_561 SM00841 Elongation factor P, C-terminal CH46_561 SM01185 CH46_561 CH46_565 SM00883 Chaperonin 10 Kd subunit CH46_571 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH46_576 SM01276 CH46_576 CH46_581 SM00342 helix_turn_helix, arabinose operon control protein CH46_582 SM00342 helix_turn_helix, arabinose operon control protein CH46_587 SM01007 Class II Aldolase and Adducin N-terminal domain CH46_59 SM00382 ATPases associated with a variety of cellular activities CH46_594 SM01005 Alanine racemase, C-terminal domain CH46_595 SM00382 ATPases associated with a variety of cellular activities CH46_596 SM00829 Enoylreductase CH46_60 SM00382 ATPases associated with a variety of cellular activities CH46_602 SM00563 Phosphate acyltransferases CH46_605 SM00869 Autotransporter beta-domain CH46_606 SM00060 Fibronectin type 3 domain CH46_625 SM00729 Elongator protein 3, MiaB family, Radical SAM CH46_633 SM00382 ATPases associated with a variety of cellular activities CH46_646 SM00382 ATPases associated with a variety of cellular activities CH46_654 SM00342 helix_turn_helix, arabinose operon control protein CH46_658 SM00387 Histidine kinase-like ATPases CH46_658 SM00388 His Kinase A (phosphoacceptor) domain CH46_658 SM00448 cheY-homologous receiver domain CH46_659 SM00421 helix_turn_helix, Lux Regulon CH46_659 SM00448 cheY-homologous receiver domain CH46_668 SM00382 ATPases associated with a variety of cellular activities CH46_68 SM00354 helix_turn _helix lactose operon repressor CH46_681 SM00422 helix_turn_helix, mercury resistance CH46_683 SM00662 RNA polymerases D CH46_684 SM00363 S4 RNA-binding domain CH46_684 SM01390 CH46_684 CH46_697 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH46_698 SM01374 CH46_698 CH46_702 SM00322 K homology RNA-binding domain CH46_705 SM01382 CH46_705 CH46_705 SM01383 CH46_705 CH46_709 SM01403 CH46_709 CH46_71 SM00354 helix_turn _helix lactose operon repressor CH46_712 SM01321 CH46_712 CH46_714 SM00838 Elongation factor G C-terminus CH46_714 SM00889 Elongation factor G, domain IV CH46_728 SM00382 ATPases associated with a variety of cellular activities CH46_733 SM00382 ATPases associated with a variety of cellular activities CH46_734 SM00062 Bacterial periplasmic substrate-binding proteins CH46_741 SM00100 Cyclic nucleotide-monophosphate binding domain CH46_741 SM00419 helix_turn_helix, cAMP Regulatory protein CH46_749 SM00382 ATPases associated with a variety of cellular activities CH46_751 SM00354 helix_turn _helix lactose operon repressor CH46_776 SM00363 S4 RNA-binding domain CH46_779 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH46_779 SM00387 Histidine kinase-like ATPases CH46_779 SM00388 His Kinase A (phosphoacceptor) domain CH46_780 SM00448 cheY-homologous receiver domain CH46_780 SM00862 Transcriptional regulatory protein, C terminal CH46_782 SM00316 Ribosomal protein S1-like RNA-binding domain CH46_782 SM00732 Likely ribonuclease with RNase H fold. CH46_783 SM00899 CH46_783 CH46_793 SM00421 helix_turn_helix, Lux Regulon CH46_794 SM00450 Rhodanese Homology Domain CH46_796 SM00420 helix_turn_helix, Deoxyribose operon repressor CH46_796 SM01134 CH46_796 CH46_8 SM01011 Aminopeptidase P, N-terminal domain CH46_806 SM00487 DEAD-like helicases superfamily CH46_806 SM00490 helicase superfamily c-terminal domain CH46_808 SM00354 helix_turn _helix lactose operon repressor CH46_811 SM00382 ATPases associated with a variety of cellular activities CH46_811 SM01086 C-terminal, D2-small domain, of ClpB protein CH46_819 SM00382 ATPases associated with a variety of cellular activities CH46_820 SM00382 ATPases associated with a variety of cellular activities CH46_821 SM01321 CH46_821 CH46_841 SM00448 cheY-homologous receiver domain CH46_841 SM00862 Transcriptional regulatory protein, C terminal CH46_842 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH46_842 SM00387 Histidine kinase-like ATPases CH46_842 SM00388 His Kinase A (phosphoacceptor) domain CH46_843 SM00342 helix_turn_helix, arabinose operon control protein CH46_845 SM00971 Serine acetyltransferase, N-terminal CH46_849 SM00450 Rhodanese Homology Domain CH46_854 SM00829 Enoylreductase CH46_862 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CH46_862 SM01232 CH46_862 CH46_87 SM00420 helix_turn_helix, Deoxyribose operon repressor CH46_87 SM01134 CH46_87 CH46_873 SM00532 Ligase N family CH46_874 SM00072 Guanylate kinase homologues. CH46_875 SM01409 CH46_875 CH46_876 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH46_876 SM00954 Region found in RelA / SpoT proteins CH46_878 SM00487 DEAD-like helicases superfamily CH46_878 SM00490 helicase superfamily c-terminal domain CH46_884 SM00382 ATPases associated with a variety of cellular activities CH46_889 SM01230 CH46_889 CH46_890 SM00091 PAS domain CH46_890 SM00387 Histidine kinase-like ATPases CH46_890 SM00388 His Kinase A (phosphoacceptor) domain CH46_891 SM00382 ATPases associated with a variety of cellular activities CH46_891 SM00448 cheY-homologous receiver domain CH46_892 SM00729 Elongator protein 3, MiaB family, Radical SAM CH46_895 SM01321 CH46_895 CH46_896 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH46_896 SM00474 3'-5' exonuclease CH46_896 SM00475 5'-3' exonuclease CH46_896 SM00482 DNA polymerase A domain CH46_907 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH46_907 SM00895 CH46_907 CH46_91 SM00382 ATPases associated with a variety of cellular activities CH46_913 SM00382 ATPases associated with a variety of cellular activities CH46_914 SM00327 von Willebrand factor (vWF) type A domain CH46_916 SM00344 helix_turn_helix ASNC type CH46_918 SM01228 CH46_918 CH46_927 SM00382 ATPases associated with a variety of cellular activities CH46_93 SM00869 Autotransporter beta-domain CH46_934 SM00382 ATPases associated with a variety of cellular activities CH46_937 SM00062 Bacterial periplasmic substrate-binding proteins CH46_947 SM01234 CH46_947 CH46_951 SM00382 ATPases associated with a variety of cellular activities CH46_951 SM00760 Bacterial dnaA protein helix-turn-helix domain CH46_952 SM00480 DNA polymerase III beta subunit CH46_954 SM00387 Histidine kinase-like ATPases CH46_954 SM00433 TopoisomeraseII CH46_957 SM00382 ATPases associated with a variety of cellular activities CH46_96 SM00947 Carbonic anhydrase CH46_971 SM00642 Alpha-amylase domain CH46_989 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH46_989 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH46_989 SM01358 CH46_989 CH46_992 SM00926 Molybdopterin oxidoreductase Fe4S4 domain