locus-tag class description CH55_1 PF03918 Cytochrome C biogenesis protein CH55_10 PF05175 Methyltransferase small domain CH55_100 PF00210 Ferritin-like domain CH55_1000 PF06276 Ferric iron reductase FhuF-like transporter CH55_1000 PF04183 IucA / IucC family CH55_1001 PF00593 TonB dependent receptor CH55_1001 PF07660 Secretin and TonB N terminus short domain CH55_1001 PF07715 TonB-dependent Receptor Plug Domain CH55_1002 PF01497 Periplasmic binding protein CH55_1003 PF01032 FecCD transport family CH55_1004 PF01032 FecCD transport family CH55_1005 PF00005 ABC transporter CH55_1006 PF06276 Ferric iron reductase FhuF-like transporter CH55_1006 PF04183 IucA / IucC family CH55_1008 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CH55_1009 PF00282 Pyridoxal-dependent decarboxylase conserved domain CH55_101 PF13649 Methyltransferase domain CH55_1010 PF11575 FhuF 2Fe-2S C-terminal domain CH55_1010 PF06276 Ferric iron reductase FhuF-like transporter CH55_1011 PF03741 Integral membrane protein TerC family CH55_1011 PF03471 Transporter associated domain CH55_1011 PF00571 CBS domain CH55_1012 PF05170 AsmA family CH55_1013 PF00692 dUTPase CH55_1014 PF00485 Phosphoribulokinase / Uridine kinase family CH55_1015 PF10609 NUBPL iron-transfer P-loop NTPase CH55_1016 PF01588 Putative tRNA binding domain CH55_1016 PF09334 tRNA synthetases class I (M) CH55_1017 PF01797 Transposase IS200 like CH55_1022 PF07690 Major Facilitator Superfamily CH55_1023 PF03788 LrgA family CH55_1024 PF04172 LrgB-like family CH55_1025 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CH55_1025 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH55_1026 PF03949 Malic enzyme, NAD binding domain CH55_1026 PF00390 Malic enzyme, N-terminal domain CH55_1027 PF02698 DUF218 domain CH55_1028 PF02653 Branched-chain amino acid transport system / permease component CH55_1029 PF00005 ABC transporter CH55_103 PF00892 EamA-like transporter family CH55_1030 PF13407 Periplasmic binding protein domain CH55_1031 PF04235 Protein of unknown function (DUF418) CH55_1032 PF01227 GTP cyclohydrolase I CH55_1033 PF06779 Uncharacterised MFS-type transporter YbfB CH55_1034 PF03466 LysR substrate binding domain CH55_1034 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_1035 PF08240 Alcohol dehydrogenase GroES-like domain CH55_1035 PF00107 Zinc-binding dehydrogenase CH55_1036 PF00756 Putative esterase CH55_1039 PF13533 Biotin-lipoyl like CH55_104 PF13505 Outer membrane protein beta-barrel domain CH55_1040 PF00005 ABC transporter CH55_1042 PF03454 MoeA C-terminal region (domain IV) CH55_1042 PF00994 Probable molybdopterin binding domain CH55_1042 PF03453 MoeA N-terminal region (domain I and II) CH55_1043 PF00899 ThiF family CH55_1044 PF00872 Transposase, Mutator family CH55_1045 PF00872 Transposase, Mutator family CH55_1047 PF00005 ABC transporter CH55_1047 PF12848 ABC transporter CH55_1067 PF00004 ATPase family associated with various cellular activities (AAA) CH55_1067 PF07724 AAA domain (Cdc48 subfamily) CH55_1067 PF17871 AAA lid domain CH55_1067 PF10431 C-terminal, D2-small domain, of ClpB protein CH55_1076 PF00698 Acyl transferase domain CH55_1077 PF00550 Phosphopantetheine attachment site CH55_108 PF08240 Alcohol dehydrogenase GroES-like domain CH55_108 PF00107 Zinc-binding dehydrogenase CH55_1080 PF00378 Enoyl-CoA hydratase/isomerase CH55_1082 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal CH55_1082 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal CH55_1084 PF00109 Beta-ketoacyl synthase, N-terminal domain CH55_1084 PF02801 Beta-ketoacyl synthase, C-terminal domain CH55_1085 PF07977 FabA-like domain CH55_1088 PF08031 Berberine and berberine like CH55_1088 PF01565 FAD binding domain CH55_109 PF13407 Periplasmic binding protein domain CH55_1093 PF13610 DDE domain CH55_1095 PF04358 DsrC like protein CH55_1096 PF00708 Acylphosphatase CH55_1097 PF10672 S-adenosylmethionine-dependent methyltransferase CH55_1097 PF17785 PUA-like domain CH55_1098 PF08755 Hemimethylated DNA-binding protein YccV like CH55_1099 PF13380 CoA binding domain CH55_11 PF01264 Chorismate synthase CH55_110 PF00005 ABC transporter CH55_1100 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CH55_1101 PF02142 MGS-like domain CH55_1102 PF13361 UvrD-like helicase C-terminal domain CH55_1102 PF12462 DNA helicase IV / RNA helicase N terminal CH55_1102 PF00580 UvrD/REP helicase N-terminal domain CH55_1103 PF03733 Inner membrane component domain CH55_1104 PF12805 FUSC-like inner membrane protein yccS CH55_1105 PF04993 TfoX N-terminal domain CH55_1105 PF04994 TfoX C-terminal domain CH55_1106 PF03846 Cell division inhibitor SulA CH55_1107 PF00691 OmpA family CH55_1107 PF01389 OmpA-like transmembrane domain CH55_1108 PF01797 Transposase IS200 like CH55_1109 PF06303 MatP N-terminal domain CH55_1109 PF17414 MatP C-terminal ribbon-helix-helix domain CH55_111 PF02653 Branched-chain amino acid transport system / permease component CH55_1110 PF13654 AAA domain CH55_1110 PF05362 Lon protease (S16) C-terminal proteolytic domain CH55_1111 PF07977 FabA-like domain CH55_1113 PF00109 Beta-ketoacyl synthase, N-terminal domain CH55_1113 PF02801 Beta-ketoacyl synthase, C-terminal domain CH55_1114 PF02796 Helix-turn-helix domain of resolvase CH55_1114 PF00665 Integrase core domain CH55_1115 PF01695 IstB-like ATP binding protein CH55_1116 PF01695 IstB-like ATP binding protein CH55_1117 PF00109 Beta-ketoacyl synthase, N-terminal domain CH55_1117 PF02801 Beta-ketoacyl synthase, C-terminal domain CH55_1118 PF01797 Transposase IS200 like CH55_1119 PF03886 ABC-type transport auxiliary lipoprotein component CH55_112 PF00356 Bacterial regulatory proteins, lacI family CH55_1120 PF02470 MlaD protein CH55_1121 PF04403 Paraquat-inducible protein A CH55_1122 PF12848 ABC transporter CH55_1122 PF16326 ABC transporter C-terminal domain CH55_1122 PF00005 ABC transporter CH55_1123 PF01170 Putative RNA methylase family UPF0020 CH55_1123 PF02926 THUMP domain CH55_1123 PF10672 S-adenosylmethionine-dependent methyltransferase CH55_1124 PF00111 2Fe-2S iron-sulfur cluster binding domain CH55_1124 PF03473 MOSC domain CH55_1124 PF03476 MOSC N-terminal beta barrel domain CH55_1125 PF07126 Cell-division protein ZapC CH55_1126 PF01180 Dihydroorotate dehydrogenase CH55_1127 PF01433 Peptidase family M1 domain CH55_1127 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CH55_1127 PF11940 Domain of unknown function (DUF3458) Ig-like fold CH55_1128 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CH55_1128 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CH55_1129 PF00152 tRNA synthetases class II (D, K and N) CH55_1129 PF01336 OB-fold nucleic acid binding domain CH55_113 PF03466 LysR substrate binding domain CH55_113 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_1130 PF00267 Gram-negative porin CH55_1131 PF00155 Aminotransferase class I and II CH55_1132 PF00753 Metallo-beta-lactamase superfamily CH55_1133 PF05951 Bacterial protein of unknown function (DUF882) CH55_1134 PF01471 Putative peptidoglycan binding domain CH55_1134 PF03734 L,D-transpeptidase catalytic domain CH55_1135 PF01797 Transposase IS200 like CH55_1136 PF04310 MukB N-terminal CH55_1136 PF16330 MukB hinge domain CH55_1137 PF04288 MukE-like family CH55_1138 PF17192 MukF middle domain CH55_1138 PF17193 MukF C-terminal domain CH55_1138 PF03882 MukF winged-helix domain CH55_114 PF00180 Isocitrate/isopropylmalate dehydrogenase CH55_1140 PF01636 Phosphotransferase enzyme family CH55_1141 PF02348 Cytidylyltransferase CH55_1142 PF03966 Trm112p-like protein CH55_1143 PF00313 'Cold-shock' DNA-binding domain CH55_1144 PF07063 Domain of unknown function (DUF1338) CH55_1145 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CH55_1146 PF00664 ABC transporter transmembrane region CH55_1146 PF00005 ABC transporter CH55_1147 PF03772 Competence protein CH55_1147 PF00753 Metallo-beta-lactamase superfamily CH55_1149 PF00216 Bacterial DNA-binding protein CH55_115 PF02028 BCCT, betaine/carnitine/choline family transporter CH55_1151 PF00575 S1 RNA binding domain CH55_1152 PF02224 Cytidylate kinase CH55_1153 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH55_1154 PF00266 Aminotransferase class-V CH55_1156 PF05658 Head domain of trimeric autotransporter adhesin CH55_1156 PF03895 YadA-like membrane anchor domain CH55_1156 PF05658 Head domain of trimeric autotransporter adhesin CH55_1156 PF03895 YadA-like membrane anchor domain CH55_1156 PF13018 Extended Signal Peptide of Type V secretion system CH55_1156 PF13018 Extended Signal Peptide of Type V secretion system CH55_1156 PF05662 Coiled stalk of trimeric autotransporter adhesin CH55_1156 PF05662 Coiled stalk of trimeric autotransporter adhesin CH55_1157 PF00710 Asparaginase, N-terminal CH55_1157 PF17763 Glutaminase/Asparaginase C-terminal domain CH55_1158 PF18381 YcaO cyclodehydratase C-terminal domain CH55_1158 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CH55_1159 PF01226 Formate/nitrite transporter CH55_116 PF00355 Rieske [2Fe-2S] domain CH55_116 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CH55_1160 PF02901 Pyruvate formate lyase-like CH55_1160 PF01228 Glycine radical CH55_1162 PF04055 Radical SAM superfamily CH55_1163 PF07690 Major Facilitator Superfamily CH55_1164 PF00665 Integrase core domain CH55_1164 PF02796 Helix-turn-helix domain of resolvase CH55_1165 PF01695 IstB-like ATP binding protein CH55_1166 PF07690 Major Facilitator Superfamily CH55_1167 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH55_1167 PF02403 Seryl-tRNA synthetase N-terminal domain CH55_1168 PF00004 ATPase family associated with various cellular activities (AAA) CH55_1168 PF16193 AAA C-terminal domain CH55_1168 PF12002 MgsA AAA+ ATPase C terminal CH55_117 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CH55_117 PF00355 Rieske [2Fe-2S] domain CH55_1170 PF03548 Outer membrane lipoprotein carrier protein LolA CH55_1171 PF01580 FtsK/SpoIIIE family CH55_1171 PF17854 FtsK alpha domain CH55_1171 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CH55_1171 PF09397 Ftsk gamma domain CH55_1172 PF01037 Lrp/AsnC ligand binding domain CH55_1173 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH55_1174 PF00664 ABC transporter transmembrane region CH55_1174 PF00005 ABC transporter CH55_1175 PF00005 ABC transporter CH55_1175 PF00664 ABC transporter transmembrane region CH55_1176 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CH55_1177 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CH55_1178 PF01176 Translation initiation factor 1A / IF-1 CH55_1179 PF01797 Transposase IS200 like CH55_118 PF00970 Oxidoreductase FAD-binding domain CH55_118 PF00175 Oxidoreductase NAD-binding domain CH55_118 PF00111 2Fe-2S iron-sulfur cluster binding domain CH55_1180 PF07724 AAA domain (Cdc48 subfamily) CH55_1180 PF00004 ATPase family associated with various cellular activities (AAA) CH55_1180 PF17871 AAA lid domain CH55_1180 PF02861 Clp amino terminal domain, pathogenicity island component CH55_1180 PF10431 C-terminal, D2-small domain, of ClpB protein CH55_1181 PF02617 ATP-dependent Clp protease adaptor protein ClpS CH55_1182 PF00313 'Cold-shock' DNA-binding domain CH55_1183 PF00005 ABC transporter CH55_1183 PF02687 FtsX-like permease family CH55_1183 PF12704 MacB-like periplasmic core domain CH55_1184 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH55_1185 PF04393 Protein of unknown function (DUF535) CH55_1186 PF11398 Protein of unknown function (DUF2813) CH55_1187 PF03956 Lysine exporter LysO CH55_1188 PF03063 Prismane/CO dehydrogenase family CH55_1189 PF00970 Oxidoreductase FAD-binding domain CH55_1189 PF00111 2Fe-2S iron-sulfur cluster binding domain CH55_1189 PF00175 Oxidoreductase NAD-binding domain CH55_119 PF17287 POTRA domain CH55_119 PF08479 POTRA domain, ShlB-type CH55_119 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH55_1190 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH55_1190 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH55_1190 PF00205 Thiamine pyrophosphate enzyme, central domain CH55_1191 PF01212 Beta-eliminating lyase CH55_1192 PF13460 NAD(P)H-binding CH55_1192 PF11066 Protein of unknown function (DUF2867) CH55_1193 PF01370 NAD dependent epimerase/dehydratase family CH55_1194 PF12883 Protein of unknown function (DUF3828) CH55_1195 PF01817 Chorismate mutase type II CH55_1196 PF00005 ABC transporter CH55_1197 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH55_1198 PF00528 Binding-protein-dependent transport system inner membrane component CH55_1199 PF00528 Binding-protein-dependent transport system inner membrane component CH55_12 PF03411 Penicillin-insensitive murein endopeptidase CH55_120 PF04829 Pre-toxin domain with VENN motif CH55_120 PF05860 haemagglutination activity domain CH55_120 PF13018 Extended Signal Peptide of Type V secretion system CH55_120 PF13332 Hemagglutinin repeat CH55_1200 PF00892 EamA-like transporter family CH55_1201 PF10100 Staphylopine dehydrogenase CH55_1202 PF03059 Nicotianamine synthase protein CH55_1203 PF00005 ABC transporter CH55_1204 PF01032 FecCD transport family CH55_1209 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH55_121 PF13018 Extended Signal Peptide of Type V secretion system CH55_121 PF13332 Hemagglutinin repeat CH55_121 PF05860 haemagglutination activity domain CH55_121 PF04829 Pre-toxin domain with VENN motif CH55_1210 PF05958 tRNA (Uracil-5-)-methyltransferase CH55_1211 PF10767 Protein of unknown function (DUF2593) CH55_1212 PF00528 Binding-protein-dependent transport system inner membrane component CH55_1213 PF00528 Binding-protein-dependent transport system inner membrane component CH55_1214 PF08402 TOBE domain CH55_1214 PF00005 ABC transporter CH55_1215 PF13416 Bacterial extracellular solute-binding protein CH55_1216 PF10722 Putative bacterial sensory transduction regulator CH55_1217 PF07214 Protein of unknown function (DUF1418) CH55_1218 PF00462 Glutaredoxin CH55_1219 PF06826 Predicted Permease Membrane Region CH55_1219 PF02080 TrkA-C domain CH55_1221 PF01569 PAP2 superfamily CH55_1222 PF01791 DeoC/LacD family aldolase CH55_1223 PF00455 DeoR C terminal sensor domain CH55_1223 PF08220 DeoR-like helix-turn-helix domain CH55_1226 PF00768 D-alanyl-D-alanine carboxypeptidase CH55_1226 PF07943 Penicillin-binding protein 5, C-terminal domain CH55_1227 PF00528 Binding-protein-dependent transport system inner membrane component CH55_1228 PF00005 ABC transporter CH55_1228 PF09383 NIL domain CH55_1229 PF03180 NLPA lipoprotein CH55_1232 PF13417 Glutathione S-transferase, N-terminal domain CH55_1232 PF00043 Glutathione S-transferase, C-terminal domain CH55_1233 PF07715 TonB-dependent Receptor Plug Domain CH55_1233 PF00593 TonB dependent receptor CH55_1234 PF00005 ABC transporter CH55_1235 PF01032 FecCD transport family CH55_1237 PF00324 Amino acid permease CH55_1238 PF00324 Amino acid permease CH55_124 PF05860 haemagglutination activity domain CH55_124 PF04829 Pre-toxin domain with VENN motif CH55_124 PF13018 Extended Signal Peptide of Type V secretion system CH55_124 PF13332 Hemagglutinin repeat CH55_1240 PF03466 LysR substrate binding domain CH55_1240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_1241 PF03601 Conserved hypothetical protein 698 CH55_1242 PF01261 Xylose isomerase-like TIM barrel CH55_1243 PF00577 Outer membrane usher protein CH55_1243 PF13954 PapC N-terminal domain CH55_1243 PF13953 PapC C-terminal domain CH55_1244 PF02753 Pili assembly chaperone PapD, C-terminal domain CH55_1244 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH55_1246 PF17550 Family of unknown function CH55_1247 PF00486 Transcriptional regulatory protein, C terminal CH55_1248 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH55_1248 PF02378 Phosphotransferase system, EIIC CH55_1249 PF00294 pfkB family carbohydrate kinase CH55_1250 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH55_1250 PF00381 PTS HPr component phosphorylation site CH55_1251 PF00293 NUDIX domain CH55_1252 PF02653 Branched-chain amino acid transport system / permease component CH55_1253 PF00005 ABC transporter CH55_1255 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH55_1256 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH55_1256 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH55_1257 PF00171 Aldehyde dehydrogenase family CH55_1259 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH55_1259 PF01842 ACT domain CH55_1259 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH55_1261 PF03692 Putative zinc- or iron-chelating domain CH55_1262 PF03222 Tryptophan/tyrosine permease family CH55_1263 PF08207 Elongation factor P (EF-P) KOW-like domain CH55_1263 PF09285 Elongation factor P, C-terminal CH55_1263 PF01132 Elongation factor P (EF-P) OB domain CH55_1264 PF03786 D-mannonate dehydratase (UxuA) CH55_1265 PF01232 Mannitol dehydrogenase Rossmann domain CH55_1265 PF08125 Mannitol dehydrogenase C-terminal domain CH55_1266 PF07729 FCD domain CH55_1266 PF00392 Bacterial regulatory proteins, gntR family CH55_1268 PF07683 Cobalamin synthesis protein cobW C-terminal domain CH55_1268 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH55_1269 PF01569 PAP2 superfamily CH55_127 PF04829 Pre-toxin domain with VENN motif CH55_127 PF05594 Haemagluttinin repeat CH55_127 PF15526 Novel toxin 21 CH55_127 PF05860 haemagglutination activity domain CH55_127 PF13332 Hemagglutinin repeat CH55_1270 PF00877 NlpC/P60 family CH55_1272 PF12792 CSS motif domain associated with EAL CH55_1272 PF00563 EAL domain CH55_1273 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH55_1274 PF00528 Binding-protein-dependent transport system inner membrane component CH55_1275 PF00528 Binding-protein-dependent transport system inner membrane component CH55_1275 PF12911 N-terminal TM domain of oligopeptide transport permease C CH55_1276 PF00005 ABC transporter CH55_1276 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH55_1277 PF13989 YejG-like protein CH55_1278 PF07690 Major Facilitator Superfamily CH55_1279 PF00849 RNA pseudouridylate synthase CH55_1279 PF01479 S4 domain CH55_1280 PF00271 Helicase conserved C-terminal domain CH55_1280 PF04851 Type III restriction enzyme, res subunit CH55_1281 PF01386 Ribosomal L25p family CH55_1283 PF01797 Transposase IS200 like CH55_1284 PF04245 37-kD nucleoid-associated bacterial protein CH55_1285 PF07208 Protein of unknown function (DUF1414) CH55_1286 PF11893 Domain of unknown function (DUF3413) CH55_1286 PF00884 Sulfatase CH55_1289 PF05638 Type VI secretion system effector, Hcp CH55_129 PF17912 MalK OB fold domain CH55_129 PF00005 ABC transporter CH55_1293 PF00232 Glycosyl hydrolase family 1 CH55_1295 PF01418 Helix-turn-helix domain, rpiR family CH55_1295 PF01380 SIS domain CH55_1296 PF07484 Phage Tail Collar Domain CH55_1299 PF04865 Baseplate J-like protein CH55_13 PF01925 Sulfite exporter TauE/SafE CH55_130 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH55_130 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH55_130 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH55_130 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH55_1307 PF17482 Phage tail sheath C-terminal domain CH55_1307 PF04984 Phage tail sheath protein subtilisin-like domain CH55_131 PF00356 Bacterial regulatory proteins, lacI family CH55_1311 PF01261 Xylose isomerase-like TIM barrel CH55_1312 PF00455 DeoR C terminal sensor domain CH55_1312 PF08220 DeoR-like helix-turn-helix domain CH55_1313 PF00596 Class II Aldolase and Adducin N-terminal domain CH55_1314 PF17042 Nucleotide-binding C-terminal domain CH55_1314 PF07005 Sugar-binding N-terminal domain CH55_1315 PF06530 Phage antitermination protein Q CH55_1316 PF00717 Peptidase S24-like CH55_1316 PF01381 Helix-turn-helix CH55_1317 PF06183 DinI-like family CH55_1318 PF01278 Omptin family CH55_1319 PF00672 HAMP domain CH55_1319 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH55_1319 PF02743 Cache domain CH55_1320 PF12706 Beta-lactamase superfamily domain CH55_1322 PF00144 Beta-lactamase CH55_1325 PF01797 Transposase IS200 like CH55_1326 PF00267 Gram-negative porin CH55_1328 PF07690 Major Facilitator Superfamily CH55_1329 PF01627 Hpt domain CH55_1329 PF16359 RcsD-ABL domain CH55_1329 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH55_133 PF00528 Binding-protein-dependent transport system inner membrane component CH55_1330 PF16359 RcsD-ABL domain CH55_1330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH55_1330 PF01627 Hpt domain CH55_1331 PF00072 Response regulator receiver domain CH55_1331 PF00196 Bacterial regulatory proteins, luxR family CH55_1332 PF00072 Response regulator receiver domain CH55_1332 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH55_1332 PF00512 His Kinase A (phospho-acceptor) domain CH55_1332 PF09456 RcsC Alpha-Beta-Loop (ABL) CH55_1333 PF00521 DNA gyrase/topoisomerase IV, subunit A CH55_1333 PF03989 DNA gyrase C-terminal domain, beta-propeller CH55_1335 PF02867 Ribonucleotide reductase, barrel domain CH55_1335 PF03477 ATP cone domain CH55_1335 PF00317 Ribonucleotide reductase, all-alpha domain CH55_1336 PF00268 Ribonucleotide reductase, small chain CH55_1337 PF00111 2Fe-2S iron-sulfur cluster binding domain CH55_1338 PF03974 Ecotin CH55_1339 PF00994 Probable molybdopterin binding domain CH55_134 PF00528 Binding-protein-dependent transport system inner membrane component CH55_1340 PF03222 Tryptophan/tyrosine permease family CH55_1341 PF07437 YfaZ precursor CH55_1342 PF00199 Catalase CH55_1342 PF06628 Catalase-related immune-responsive CH55_1343 PF06733 DEAD_2 CH55_1343 PF13307 Helicase C-terminal domain CH55_1343 PF00270 DEAD/DEAH box helicase CH55_1344 PF00267 Gram-negative porin CH55_1345 PF00892 EamA-like transporter family CH55_1347 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH55_1347 PF01276 Orn/Lys/Arg decarboxylase, major domain CH55_1347 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH55_1348 PF13520 Amino acid permease CH55_1349 PF00528 Binding-protein-dependent transport system inner membrane component CH55_135 PF04041 beta-1,4-mannooligosaccharide phosphorylase CH55_1350 PF00005 ABC transporter CH55_1351 PF00528 Binding-protein-dependent transport system inner membrane component CH55_1352 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH55_1353 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH55_1354 PF00581 Rhodanese-like domain CH55_1357 PF00005 ABC transporter CH55_1358 PF00005 ABC transporter CH55_1359 PF02653 Branched-chain amino acid transport system / permease component CH55_1360 PF13188 PAS domain CH55_1360 PF00158 Sigma-54 interaction domain CH55_1360 PF02954 Bacterial regulatory protein, Fis family CH55_1361 PF07308 Protein of unknown function (DUF1456) CH55_1362 PF00528 Binding-protein-dependent transport system inner membrane component CH55_1364 PF00528 Binding-protein-dependent transport system inner membrane component CH55_1366 PF00005 ABC transporter CH55_1367 PF04226 Transglycosylase associated protein CH55_1369 PF01844 HNH endonuclease CH55_1370 PF01928 CYTH domain CH55_1371 PF09330 D-lactate dehydrogenase, membrane binding CH55_1371 PF01565 FAD binding domain CH55_1372 PF00768 D-alanyl-D-alanine carboxypeptidase CH55_1374 PF01207 Dihydrouridine synthase (Dus) CH55_1376 PF01797 Transposase IS200 like CH55_1377 PF00271 Helicase conserved C-terminal domain CH55_1377 PF00270 DEAD/DEAH box helicase CH55_1378 PF00872 Transposase, Mutator family CH55_1384 PF05638 Type VI secretion system effector, Hcp CH55_1385 PF01797 Transposase IS200 like CH55_1386 PF02540 NAD synthase CH55_1386 PF00958 GMP synthase C terminal domain CH55_1386 PF00117 Glutamine amidotransferase class-I CH55_1387 PF00478 IMP dehydrogenase / GMP reductase domain CH55_1387 PF00571 CBS domain CH55_1388 PF02601 Exonuclease VII, large subunit CH55_1388 PF13742 OB-fold nucleic acid binding domain CH55_1389 PF07191 zinc-ribbons CH55_139 PF00924 Mechanosensitive ion channel CH55_1391 PF01926 50S ribosome-binding GTPase CH55_1391 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CH55_1392 PF13360 PQQ-like domain CH55_1393 PF09976 Tetratricopeptide repeat-like domain CH55_1394 PF13393 Histidyl-tRNA synthetase CH55_1394 PF03129 Anticodon binding domain CH55_1395 PF04551 GcpE protein CH55_1396 PF13464 Domain of unknown function (DUF4115) CH55_1398 PF04055 Radical SAM superfamily CH55_1399 PF00334 Nucleoside diphosphate kinase CH55_14 PF04315 Elongation factor P hydroxylase CH55_140 PF01867 CRISPR associated protein Cas1 CH55_1402 PF03212 Pertactin CH55_1402 PF03797 Autotransporter beta-domain CH55_1402 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH55_1403 PF03212 Pertactin CH55_1403 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH55_1403 PF03797 Autotransporter beta-domain CH55_1405 PF14581 SseB protein C-terminal domain CH55_1405 PF07179 SseB protein N-terminal domain CH55_1406 PF00883 Cytosol aminopeptidase family, catalytic domain CH55_1406 PF12404 Peptidase CH55_1407 PF04384 Iron-sulphur cluster assembly CH55_1408 PF00111 2Fe-2S iron-sulfur cluster binding domain CH55_1409 PF00012 Hsp70 protein CH55_1410 PF00226 DnaJ domain CH55_1410 PF07743 HSCB C-terminal oligomerisation domain CH55_1411 PF01521 Iron-sulphur cluster biosynthesis CH55_1412 PF01592 NifU-like N terminal domain CH55_1413 PF00266 Aminotransferase class-V CH55_1414 PF02082 Transcriptional regulator CH55_1415 PF00588 SpoU rRNA Methylase family CH55_1416 PF00459 Inositol monophosphatase family CH55_1417 PF01797 Transposase IS200 like CH55_1418 PF03824 High-affinity nickel-transport protein CH55_1419 PF06226 Protein of unknown function (DUF1007) CH55_142 PF09611 CRISPR-associated protein (Cas_Csy1) CH55_1420 PF12832 MFS_1 like family CH55_1421 PF00874 PRD domain CH55_1422 PF13505 Outer membrane protein beta-barrel domain CH55_1423 PF00464 Serine hydroxymethyltransferase CH55_1424 PF00042 Globin CH55_1424 PF00970 Oxidoreductase FAD-binding domain CH55_1424 PF00175 Oxidoreductase NAD-binding domain CH55_1425 PF14503 YhfZ C-terminal domain CH55_1425 PF14502 Helix-turn-helix domain CH55_1426 PF14503 YhfZ C-terminal domain CH55_1426 PF14502 Helix-turn-helix domain CH55_1427 PF00543 Nitrogen regulatory protein P-II CH55_1428 PF00795 Carbon-nitrogen hydrolase CH55_1428 PF02540 NAD synthase CH55_1429 PF00072 Response regulator receiver domain CH55_1429 PF00158 Sigma-54 interaction domain CH55_143 PF09614 CRISPR-associated protein (Cas_Csy2) CH55_1430 PF13942 YfhG lipoprotein CH55_1431 PF00512 His Kinase A (phospho-acceptor) domain CH55_1431 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH55_1432 PF01797 Transposase IS200 like CH55_1436 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CH55_1436 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CH55_1436 PF02769 AIR synthase related protein, C-terminal domain CH55_1437 PF01464 Transglycosylase SLT domain CH55_1437 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH55_1438 PF14437 MafB19-like deaminase CH55_144 PF09615 CRISPR-associated protein (Cas_Csy3) CH55_1440 PF01380 SIS domain CH55_1441 PF01380 SIS domain CH55_1441 PF01418 Helix-turn-helix domain, rpiR family CH55_1442 PF12838 4Fe-4S dicluster domain CH55_1443 PF01797 Transposase IS200 like CH55_1444 PF01648 4'-phosphopantetheinyl transferase superfamily CH55_1445 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CH55_1446 PF02565 Recombination protein O C terminal CH55_1446 PF11967 Recombination protein O N terminal CH55_1447 PF07650 KH domain CH55_1447 PF01926 50S ribosome-binding GTPase CH55_1448 PF00035 Double-stranded RNA binding motif CH55_1448 PF14622 Ribonuclease-III-like CH55_1449 PF10502 Signal peptidase, peptidase S26 CH55_145 PF09618 CRISPR-associated protein (Cas_Csy4) CH55_1450 PF00679 Elongation factor G C-terminus CH55_1450 PF00009 Elongation factor Tu GTP binding domain CH55_1450 PF03144 Elongation factor Tu domain 2 CH55_1450 PF06421 GTP-binding protein LepA C-terminus CH55_1453 PF17188 MucB/RseB C-terminal domain CH55_1453 PF03888 MucB/RseB N-terminal domain CH55_1454 PF03873 Anti sigma-E protein RseA, C-terminal domain CH55_1454 PF03872 Anti sigma-E protein RseA, N-terminal domain CH55_1455 PF08281 Sigma-70, region 4 CH55_1455 PF04542 Sigma-70 region 2 CH55_1456 PF00890 FAD binding domain CH55_1456 PF02910 Fumarate reductase flavoprotein C-term CH55_1457 PF05175 Methyltransferase small domain CH55_1458 PF00271 Helicase conserved C-terminal domain CH55_1458 PF00270 DEAD/DEAH box helicase CH55_146 PF00248 Aldo/keto reductase family CH55_1460 PF12796 Ankyrin repeats (3 copies) CH55_1463 PF01228 Glycine radical CH55_1464 PF03167 Uracil DNA glycosylase superfamily CH55_1465 PF01470 Pyroglutamyl peptidase CH55_1468 PF03746 LamB/YcsF family CH55_1469 PF02626 Carboxyltransferase domain, subdomain A and B CH55_1470 PF02682 Carboxyltransferase domain, subdomain C and D CH55_1472 PF01784 NIF3 (NGG1p interacting factor 3) CH55_1473 PF02112 cAMP phosphodiesterases class-II CH55_1474 PF00875 DNA photolyase CH55_1474 PF03441 FAD binding domain of DNA photolyase CH55_1475 PF08349 Protein of unknown function (DUF1722) CH55_1476 PF10725 Protein of unknown function (DUF2517) CH55_1477 PF03814 Potassium-transporting ATPase A subunit CH55_1479 PF02669 K+-transporting ATPase, c chain CH55_1480 PF00512 His Kinase A (phospho-acceptor) domain CH55_1480 PF02702 Osmosensitive K+ channel His kinase sensor domain CH55_1480 PF13492 GAF domain CH55_1480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH55_1480 PF13493 Domain of unknown function (DUF4118) CH55_1481 PF00486 Transcriptional regulatory protein, C terminal CH55_1481 PF00072 Response regulator receiver domain CH55_1485 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH55_1485 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH55_1485 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH55_1485 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH55_1486 PF17206 SeqA protein N-terminal domain CH55_1486 PF03925 SeqA protein C-terminal domain CH55_1489 PF04794 YdjC-like protein CH55_149 PF00083 Sugar (and other) transporter CH55_1490 PF07883 Cupin domain CH55_1490 PF12833 Helix-turn-helix domain CH55_1491 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH55_1492 PF02378 Phosphotransferase system, EIIC CH55_1493 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH55_1494 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH55_1495 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH55_1496 PF07885 Ion channel CH55_1496 PF02254 TrkA-N domain CH55_1497 PF06411 HdeA/HdeB family CH55_1498 PF03824 High-affinity nickel-transport protein CH55_1499 PF03253 Urea transporter CH55_15 PF08891 YfcL protein CH55_1500 PF01774 UreD urease accessory protein CH55_1501 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH55_1502 PF01730 UreF CH55_1503 PF02814 UreE urease accessory protein, N-terminal domain CH55_1503 PF05194 UreE urease accessory protein, C-terminal domain CH55_1504 PF00449 Urease alpha-subunit, N-terminal domain CH55_1504 PF01979 Amidohydrolase family CH55_1505 PF00699 Urease beta subunit CH55_1506 PF00547 Urease, gamma subunit CH55_1508 PF00005 ABC transporter CH55_1509 PF00005 ABC transporter CH55_151 PF03466 LysR substrate binding domain CH55_151 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_1510 PF00528 Binding-protein-dependent transport system inner membrane component CH55_1510 PF12911 N-terminal TM domain of oligopeptide transport permease C CH55_1511 PF00528 Binding-protein-dependent transport system inner membrane component CH55_1512 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH55_1513 PF00313 'Cold-shock' DNA-binding domain CH55_1515 PF06711 Protein of unknown function (DUF1198) CH55_1516 PF09400 Protein of unknown function (DUF2002) CH55_1517 PF06392 Acid shock protein repeat CH55_1519 PF07972 NrdI Flavodoxin like CH55_152 PF00765 Autoinducer synthase CH55_1520 PF02867 Ribonucleotide reductase, barrel domain CH55_1520 PF08343 Ribonucleotide reductase N-terminal CH55_1520 PF00317 Ribonucleotide reductase, all-alpha domain CH55_1521 PF00268 Ribonucleotide reductase, small chain CH55_1522 PF00571 CBS domain CH55_1522 PF00005 ABC transporter CH55_1523 PF00528 Binding-protein-dependent transport system inner membrane component CH55_1524 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH55_1526 PF00665 Integrase core domain CH55_1526 PF02796 Helix-turn-helix domain of resolvase CH55_1528 PF01695 IstB-like ATP binding protein CH55_1529 PF00589 Phage integrase family CH55_1529 PF13356 Arm DNA-binding domain CH55_153 PF00196 Bacterial regulatory proteins, luxR family CH55_153 PF03472 Autoinducer binding domain CH55_1530 PF01527 Transposase CH55_1532 PF12697 Alpha/beta hydrolase family CH55_1534 PF01402 Ribbon-helix-helix protein, copG family CH55_1535 PF00258 Flavodoxin CH55_1536 PF01475 Ferric uptake regulator family CH55_1537 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CH55_1537 PF03173 Putative carbohydrate binding domain CH55_1537 PF02838 Glycosyl hydrolase family 20, domain 2 CH55_1537 PF00728 Glycosyl hydrolase family 20, catalytic domain CH55_1538 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CH55_1538 PF00728 Glycosyl hydrolase family 20, catalytic domain CH55_1538 PF02838 Glycosyl hydrolase family 20, domain 2 CH55_1538 PF03173 Putative carbohydrate binding domain CH55_1539 PF03573 outer membrane porin, OprD family CH55_1540 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH55_1540 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CH55_1541 PF01797 Transposase IS200 like CH55_1542 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH55_1542 PF00367 phosphotransferase system, EIIB CH55_1542 PF02378 Phosphotransferase system, EIIC CH55_1543 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CH55_1544 PF01979 Amidohydrolase family CH55_1545 PF00480 ROK family CH55_1545 PF01047 MarR family CH55_1546 PF13344 Haloacid dehalogenase-like hydrolase CH55_1547 PF00733 Asparagine synthase CH55_1547 PF13537 Glutamine amidotransferase domain CH55_1554 PF01494 FAD binding domain CH55_1555 PF01938 TRAM domain CH55_1555 PF04055 Radical SAM superfamily CH55_1555 PF00919 Uncharacterized protein family UPF0004 CH55_1556 PF02562 PhoH-like protein CH55_1557 PF02130 Uncharacterized protein family UPF0054 CH55_1558 PF03471 Transporter associated domain CH55_1558 PF00571 CBS domain CH55_1559 PF00795 Carbon-nitrogen hydrolase CH55_1560 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH55_1561 PF00528 Binding-protein-dependent transport system inner membrane component CH55_1562 PF00528 Binding-protein-dependent transport system inner membrane component CH55_1563 PF00005 ABC transporter CH55_1564 PF07295 Zinc-ribbon containing domain CH55_1565 PF00133 tRNA synthetases class I (I, L, M and V) CH55_1565 PF08264 Anticodon-binding domain of tRNA CH55_1565 PF13603 Leucyl-tRNA synthetase, Domain 2 CH55_1566 PF04390 Lipopolysaccharide-assembly CH55_1567 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CH55_1567 PF06144 DNA polymerase III, delta subunit CH55_1568 PF01467 Cytidylyltransferase-like CH55_157 PF01594 AI-2E family transporter CH55_1570 PF02590 Predicted SPOUT methyltransferase CH55_1571 PF03717 Penicillin-binding Protein dimerisation domain CH55_1571 PF00905 Penicillin binding protein transpeptidase domain CH55_1572 PF01098 Cell cycle protein CH55_1573 PF05036 Sporulation related domain CH55_1573 PF03330 Lytic transglycolase CH55_1574 PF00768 D-alanyl-D-alanine carboxypeptidase CH55_1574 PF07943 Penicillin-binding protein 5, C-terminal domain CH55_1575 PF00768 D-alanyl-D-alanine carboxypeptidase CH55_1575 PF07943 Penicillin-binding protein 5, C-terminal domain CH55_1576 PF04359 Protein of unknown function (DUF493) CH55_1577 PF03099 Biotin/lipoate A/B protein ligase family CH55_1578 PF04055 Radical SAM superfamily CH55_1578 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CH55_1579 PF02416 mttA/Hcf106 family CH55_158 PF00196 Bacterial regulatory proteins, luxR family CH55_1580 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH55_1581 PF00313 'Cold-shock' DNA-binding domain CH55_1582 PF00313 'Cold-shock' DNA-binding domain CH55_1583 PF00196 Bacterial regulatory proteins, luxR family CH55_1588 PF00664 ABC transporter transmembrane region CH55_1588 PF00005 ABC transporter CH55_159 PF01266 FAD dependent oxidoreductase CH55_1590 PF04962 KduI/IolB family CH55_1591 PF01261 Xylose isomerase-like TIM barrel CH55_1592 PF00294 pfkB family carbohydrate kinase CH55_1593 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH55_1593 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH55_1594 PF02653 Branched-chain amino acid transport system / permease component CH55_1595 PF00005 ABC transporter CH55_1596 PF13407 Periplasmic binding protein domain CH55_1597 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH55_1597 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH55_1598 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH55_1598 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH55_1599 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH55_1599 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH55_1599 PF00205 Thiamine pyrophosphate enzyme, central domain CH55_16 PF01266 FAD dependent oxidoreductase CH55_16 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CH55_160 PF13991 BssS protein family CH55_1600 PF00171 Aldehyde dehydrogenase family CH55_1605 PF01835 MG2 domain CH55_1605 PF17962 Bacterial macroglobulin domain 6 CH55_1605 PF00207 Alpha-2-macroglobulin family CH55_1605 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CH55_1605 PF07703 Alpha-2-macroglobulin bait region domain CH55_1605 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CH55_1605 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CH55_1607 PF01797 Transposase IS200 like CH55_1609 PF00905 Penicillin binding protein transpeptidase domain CH55_1609 PF00912 Transglycosylase CH55_1609 PF06832 Penicillin-Binding Protein C-terminus Family CH55_161 PF00872 Transposase, Mutator family CH55_1610 PF13693 Winged helix-turn-helix DNA-binding CH55_1616 PF05638 Type VI secretion system effector, Hcp CH55_1619 PF03797 Autotransporter beta-domain CH55_1619 PF03212 Pertactin CH55_1619 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH55_1619 PF13018 Extended Signal Peptide of Type V secretion system CH55_162 PF06183 DinI-like family CH55_1621 PF08007 Cupin superfamily protein CH55_1622 PF00872 Transposase, Mutator family CH55_1627 PF00248 Aldo/keto reductase family CH55_1628 PF00248 Aldo/keto reductase family CH55_1629 PF03466 LysR substrate binding domain CH55_1629 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_163 PF01979 Amidohydrolase family CH55_1630 PF00665 Integrase core domain CH55_1630 PF02796 Helix-turn-helix domain of resolvase CH55_1631 PF01695 IstB-like ATP binding protein CH55_1632 PF01695 IstB-like ATP binding protein CH55_1635 PF00782 Dual specificity phosphatase, catalytic domain CH55_1636 PF12147 Putative methyltransferase CH55_1636 PF12146 Serine aminopeptidase, S33 CH55_1637 PF01553 Acyltransferase CH55_1639 PF01066 CDP-alcohol phosphatidyltransferase CH55_164 PF03992 Antibiotic biosynthesis monooxygenase CH55_1646 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CH55_1646 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CH55_1648 PF01797 Transposase IS200 like CH55_165 PF00872 Transposase, Mutator family CH55_1650 PF01406 tRNA synthetases class I (C) catalytic domain CH55_1650 PF09190 DALR domain CH55_1651 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH55_1652 PF00149 Calcineurin-like phosphoesterase CH55_1653 PF00731 AIR carboxylase CH55_1654 PF02222 ATP-grasp domain CH55_1654 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CH55_1656 PF00005 ABC transporter CH55_1657 PF13472 GDSL-like Lipase/Acylhydrolase family CH55_1658 PF00106 short chain dehydrogenase CH55_1659 PF00085 Thioredoxin CH55_166 PF12111 Polyribonucleotide phosphorylase C terminal CH55_166 PF10150 Ribonuclease E/G family CH55_166 PF00575 S1 RNA binding domain CH55_1660 PF16200 C-terminal region of band_7 CH55_1660 PF01145 SPFH domain / Band 7 family CH55_1661 PF01957 NfeD-like C-terminal, partner-binding CH55_1662 PF13411 MerR HTH family regulatory protein CH55_1663 PF00403 Heavy-metal-associated domain CH55_1664 PF01963 TraB family CH55_1665 PF04073 Aminoacyl-tRNA editing domain CH55_1668 PF00149 Calcineurin-like phosphoesterase CH55_1668 PF02872 5'-nucleotidase, C-terminal domain CH55_1669 PF02872 5'-nucleotidase, C-terminal domain CH55_1669 PF00149 Calcineurin-like phosphoesterase CH55_167 PF01479 S4 domain CH55_167 PF00849 RNA pseudouridylate synthase CH55_1670 PF02872 5'-nucleotidase, C-terminal domain CH55_1670 PF00149 Calcineurin-like phosphoesterase CH55_1671 PF02872 5'-nucleotidase, C-terminal domain CH55_1671 PF00149 Calcineurin-like phosphoesterase CH55_1672 PF07690 Major Facilitator Superfamily CH55_1673 PF02254 TrkA-N domain CH55_1673 PF00999 Sodium/hydrogen exchanger family CH55_1674 PF00294 pfkB family carbohydrate kinase CH55_1675 PF02706 Chain length determinant protein CH55_1676 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH55_1676 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH55_1676 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH55_1676 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH55_1677 PF00535 Glycosyl transferase family 2 CH55_1678 PF01050 Mannose-6-phosphate isomerase CH55_1678 PF00483 Nucleotidyl transferase CH55_1679 PF01370 NAD dependent epimerase/dehydratase family CH55_168 PF02545 Maf-like protein CH55_1680 PF16363 GDP-mannose 4,6 dehydratase CH55_1681 PF16363 GDP-mannose 4,6 dehydratase CH55_1682 PF00534 Glycosyl transferases group 1 CH55_1682 PF13439 Glycosyltransferase Family 4 CH55_169 PF02620 Large ribosomal RNA subunit accumulation protein YceD CH55_1690 PF01370 NAD dependent epimerase/dehydratase family CH55_1691 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH55_1692 PF16363 GDP-mannose 4,6 dehydratase CH55_1693 PF00483 Nucleotidyl transferase CH55_1694 PF00111 2Fe-2S iron-sulfur cluster binding domain CH55_1694 PF00175 Oxidoreductase NAD-binding domain CH55_1694 PF00970 Oxidoreductase FAD-binding domain CH55_1695 PF00175 Oxidoreductase NAD-binding domain CH55_1695 PF00111 2Fe-2S iron-sulfur cluster binding domain CH55_1695 PF00970 Oxidoreductase FAD-binding domain CH55_1696 PF00762 Ferrochelatase CH55_1697 PF05191 Adenylate kinase, active site lid CH55_1698 PF00183 Hsp90 protein CH55_1698 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH55_1699 PF13662 Toprim domain CH55_1699 PF02132 RecR protein CH55_17 PF00109 Beta-ketoacyl synthase, N-terminal domain CH55_17 PF02801 Beta-ketoacyl synthase, C-terminal domain CH55_170 PF01783 Ribosomal L32p protein family CH55_1700 PF02575 YbaB/EbfC DNA-binding family CH55_1701 PF12170 DNA polymerase III tau subunit V interacting with alpha CH55_1701 PF12169 DNA polymerase III subunits gamma and tau domain III CH55_1701 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CH55_1702 PF00156 Phosphoribosyl transferase domain CH55_1703 PF04304 Protein of unknown function (DUF454) CH55_1705 PF10689 Protein of unknown function (DUF2496) CH55_1706 PF12795 Mechanosensitive ion channel porin domain CH55_1706 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH55_1706 PF00924 Mechanosensitive ion channel CH55_1707 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH55_1707 PF12795 Mechanosensitive ion channel porin domain CH55_1707 PF00924 Mechanosensitive ion channel CH55_1708 PF02635 DsrE/DsrF-like family CH55_1709 PF00440 Bacterial regulatory proteins, tetR family CH55_1709 PF08361 MAATS-type transcriptional repressor, C-terminal region CH55_171 PF02504 Fatty acid synthesis protein CH55_1710 PF00529 HlyD membrane-fusion protein of T1SS CH55_1710 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH55_1711 PF00873 AcrB/AcrD/AcrF family CH55_1712 PF01197 Ribosomal protein L31 CH55_1713 PF00444 Ribosomal protein L36 CH55_1715 PF10757 Biofilm formation regulator YbaJ CH55_1716 PF05321 Haemolysin expression modulating protein CH55_1717 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH55_1718 PF09619 Type III secretion system lipoprotein chaperone (YscW) CH55_172 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH55_172 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH55_1720 PF00909 Ammonium Transporter Family CH55_1721 PF00543 Nitrogen regulatory protein P-II CH55_1722 PF00664 ABC transporter transmembrane region CH55_1722 PF00005 ABC transporter CH55_1723 PF00664 ABC transporter transmembrane region CH55_1723 PF00005 ABC transporter CH55_1724 PF13404 AsnC-type helix-turn-helix domain CH55_1724 PF01037 Lrp/AsnC ligand binding domain CH55_1725 PF00291 Pyridoxal-phosphate dependent enzyme CH55_1727 PF12793 Sugar transport-related sRNA regulator N-term CH55_1727 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH55_1728 PF06508 Queuosine biosynthesis protein QueC CH55_173 PF00698 Acyl transferase domain CH55_1731 PF13145 PPIC-type PPIASE domain CH55_1732 PF00216 Bacterial DNA-binding protein CH55_1733 PF02190 ATP-dependent protease La (LON) substrate-binding domain CH55_1733 PF05362 Lon protease (S16) C-terminal proteolytic domain CH55_1733 PF00004 ATPase family associated with various cellular activities (AAA) CH55_1734 PF07724 AAA domain (Cdc48 subfamily) CH55_1734 PF10431 C-terminal, D2-small domain, of ClpB protein CH55_1734 PF06689 ClpX C4-type zinc finger CH55_1735 PF00574 Clp protease CH55_1736 PF05697 Bacterial trigger factor protein (TF) CH55_1736 PF05698 Bacterial trigger factor protein (TF) C-terminus CH55_1736 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH55_1738 PF01722 BolA-like protein CH55_1739 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH55_1739 PF03923 Uncharacterized lipoprotein CH55_1740 PF07690 Major Facilitator Superfamily CH55_1741 PF03502 Nucleoside-specific channel-forming protein, Tsx CH55_1742 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CH55_1742 PF06481 COX Aromatic Rich Motif CH55_1743 PF00115 Cytochrome C and Quinol oxidase polypeptide I CH55_1744 PF00510 Cytochrome c oxidase subunit III CH55_1745 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CH55_1746 PF01040 UbiA prenyltransferase family CH55_1747 PF07690 Major Facilitator Superfamily CH55_1748 PF04461 Protein of unknown function (DUF520) CH55_1749 PF02558 Ketopantoate reductase PanE/ApbA CH55_1749 PF08546 Ketopantoate reductase PanE/ApbA C terminal CH55_175 PF00550 Phosphopantetheine attachment site CH55_1750 PF01965 DJ-1/PfpI family CH55_1751 PF02926 THUMP domain CH55_1751 PF02568 Thiamine biosynthesis protein (ThiI) CH55_1752 PF02609 Exonuclease VII small subunit CH55_1753 PF00348 Polyprenyl synthetase CH55_1754 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CH55_1754 PF02780 Transketolase, C-terminal domain CH55_1754 PF02779 Transketolase, pyrimidine binding domain CH55_1755 PF01797 Transposase IS200 like CH55_1756 PF04608 Phosphatidylglycerophosphatase A CH55_1757 PF02769 AIR synthase related protein, C-terminal domain CH55_1757 PF00586 AIR synthase related protein, N-terminal domain CH55_1758 PF01029 NusB family CH55_1759 PF00885 6,7-dimethyl-8-ribityllumazine synthase CH55_176 PF02801 Beta-ketoacyl synthase, C-terminal domain CH55_176 PF00109 Beta-ketoacyl synthase, N-terminal domain CH55_1760 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH55_1760 PF01872 RibD C-terminal domain CH55_1761 PF03477 ATP cone domain CH55_1764 PF01797 Transposase IS200 like CH55_1765 PF02355 Protein export membrane protein CH55_1765 PF07549 SecD/SecF GG Motif CH55_1766 PF13721 SecD export protein N-terminal TM region CH55_1766 PF02355 Protein export membrane protein CH55_1766 PF07549 SecD/SecF GG Motif CH55_1767 PF02699 Preprotein translocase subunit CH55_1768 PF01702 Queuine tRNA-ribosyltransferase CH55_1769 PF02547 Queuosine biosynthesis protein CH55_1770 PF04336 Acyl carrier protein phosphodiesterase CH55_1771 PF00578 AhpC/TSA family CH55_1771 PF10417 C-terminal domain of 1-Cys peroxiredoxin CH55_1775 PF02903 Alpha amylase, N-terminal ig-like domain CH55_1775 PF00128 Alpha amylase, catalytic domain CH55_1776 PF00324 Amino acid permease CH55_1777 PF05525 Branched-chain amino acid transport protein CH55_1778 PF12849 PBP superfamily domain CH55_1779 PF00512 His Kinase A (phospho-acceptor) domain CH55_1779 PF00989 PAS fold CH55_1779 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH55_1779 PF11808 Phosphate regulon sensor protein PhoR CH55_1780 PF00072 Response regulator receiver domain CH55_1780 PF00486 Transcriptional regulatory protein, C terminal CH55_1781 PF12320 Type 5 capsule protein repressor C-terminal domain CH55_1781 PF00149 Calcineurin-like phosphoesterase CH55_1782 PF13476 AAA domain CH55_1783 PF00480 ROK family CH55_1784 PF01695 IstB-like ATP binding protein CH55_1785 PF02796 Helix-turn-helix domain of resolvase CH55_1785 PF00665 Integrase core domain CH55_1786 PF04381 Putative exonuclease, RdgC CH55_1787 PF06865 Pyrimidine/purine nucleoside phosphorylase CH55_1788 PF01202 Shikimate kinase CH55_179 PF01063 Amino-transferase class IV CH55_1790 PF08241 Methyltransferase domain CH55_1792 PF07317 Flagellar regulator YcgR CH55_1792 PF07238 PilZ domain CH55_1793 PF01797 Transposase IS200 like CH55_1794 PF00171 Aldehyde dehydrogenase family CH55_1795 PF00696 Amino acid kinase family CH55_1795 PF01472 PUA domain CH55_1796 PF07417 Sigma factor-binding transcriptional regulator Crl CH55_1798 PF00156 Phosphoribosyl transferase domain CH55_18 PF01177 Asp/Glu/Hydantoin racemase CH55_180 PF02618 YceG-like family CH55_1801 PF01797 Transposase IS200 like CH55_1803 PF07687 Peptidase dimerisation domain CH55_1803 PF01546 Peptidase family M20/M25/M40 CH55_1804 PF11799 impB/mucB/samB family C-terminal domain CH55_1804 PF00817 impB/mucB/samB family CH55_1804 PF11798 IMS family HHH motif CH55_1805 PF03009 Glycerophosphoryl diester phosphodiesterase family CH55_1807 PF02424 ApbE family CH55_1808 PF00970 Oxidoreductase FAD-binding domain CH55_1808 PF00111 2Fe-2S iron-sulfur cluster binding domain CH55_1808 PF00175 Oxidoreductase NAD-binding domain CH55_1809 PF02508 Rnf-Nqr subunit, membrane protein CH55_181 PF02223 Thymidylate kinase CH55_1810 PF02508 Rnf-Nqr subunit, membrane protein CH55_1811 PF04205 FMN-binding domain CH55_1812 PF03116 NQR2, RnfD, RnfE family CH55_1813 PF11973 NQRA C-terminal domain CH55_1813 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CH55_1814 PF13230 Glutamine amidotransferases class-II CH55_1815 PF03734 L,D-transpeptidase catalytic domain CH55_1816 PF13580 SIS domain CH55_1817 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH55_1817 PF09317 Domain of unknown function (DUF1974) CH55_1817 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH55_1819 PF18071 HMW1C N-terminal CH55_1819 PF18254 HMW1 domain 2 CH55_182 PF09115 DNA polymerase III, delta subunit, C terminal CH55_1820 PF05860 haemagglutination activity domain CH55_1821 PF08479 POTRA domain, ShlB-type CH55_1821 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH55_1822 PF07687 Peptidase dimerisation domain CH55_1822 PF01546 Peptidase family M20/M25/M40 CH55_1823 PF00266 Aminotransferase class-V CH55_1824 PF00005 ABC transporter CH55_1826 PF00528 Binding-protein-dependent transport system inner membrane component CH55_1827 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH55_183 PF01026 TatD related DNase CH55_1830 PF01425 Amidase CH55_1832 PF07690 Major Facilitator Superfamily CH55_1833 PF03591 AzlC protein CH55_1834 PF05437 Branched-chain amino acid transport protein (AzlD) CH55_1835 PF01047 MarR family CH55_1836 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH55_1836 PF00529 HlyD membrane-fusion protein of T1SS CH55_1837 PF07690 Major Facilitator Superfamily CH55_1838 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH55_1838 PF00588 SpoU rRNA Methylase family CH55_1839 PF00085 Thioredoxin CH55_184 PF00367 phosphotransferase system, EIIB CH55_184 PF02378 Phosphotransferase system, EIIC CH55_1841 PF13607 Succinyl-CoA ligase like flavodoxin domain CH55_1841 PF00583 Acetyltransferase (GNAT) family CH55_1841 PF13380 CoA binding domain CH55_1842 PF13091 PLD-like domain CH55_1843 PF10043 Predicted periplasmic lipoprotein (DUF2279) CH55_1849 PF02861 Clp amino terminal domain, pathogenicity island component CH55_1849 PF17871 AAA lid domain CH55_1849 PF10431 C-terminal, D2-small domain, of ClpB protein CH55_1849 PF07724 AAA domain (Cdc48 subfamily) CH55_1849 PF00004 ATPase family associated with various cellular activities (AAA) CH55_185 PF01797 Transposase IS200 like CH55_1851 PF01479 S4 domain CH55_1851 PF00849 RNA pseudouridylate synthase CH55_1852 PF13525 Outer membrane lipoprotein CH55_1853 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH55_1854 PF01797 Transposase IS200 like CH55_1855 PF00800 Prephenate dehydratase CH55_1855 PF01817 Chorismate mutase type II CH55_1856 PF00665 Integrase core domain CH55_1856 PF02796 Helix-turn-helix domain of resolvase CH55_1857 PF01695 IstB-like ATP binding protein CH55_1858 PF01817 Chorismate mutase type II CH55_1858 PF00800 Prephenate dehydratase CH55_1859 PF01817 Chorismate mutase type II CH55_1859 PF02153 Prephenate dehydrogenase CH55_186 PF08501 Shikimate dehydrogenase substrate binding domain CH55_1860 PF00793 DAHP synthetase I family CH55_1861 PF00072 Response regulator receiver domain CH55_1861 PF04397 LytTr DNA-binding domain CH55_1862 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH55_1863 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH55_1864 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH55_1865 PF04338 Protein of unknown function, DUF481 CH55_1867 PF01797 Transposase IS200 like CH55_1868 PF01245 Ribosomal protein L19 CH55_1869 PF01746 tRNA (Guanine-1)-methyltransferase CH55_187 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CH55_187 PF01488 Shikimate / quinate 5-dehydrogenase CH55_187 PF08501 Shikimate dehydrogenase substrate binding domain CH55_1870 PF01782 RimM N-terminal domain CH55_1870 PF05239 PRC-barrel domain CH55_1871 PF00886 Ribosomal protein S16 CH55_1872 PF02978 Signal peptide binding domain CH55_1872 PF02881 SRP54-type protein, helical bundle domain CH55_1872 PF00448 SRP54-type protein, GTPase domain CH55_1873 PF01578 Cytochrome C assembly protein CH55_1874 PF00571 CBS domain CH55_1874 PF01595 Cyclin M transmembrane N-terminal domain CH55_1874 PF03471 Transporter associated domain CH55_1875 PF01797 Transposase IS200 like CH55_1876 PF02664 S-Ribosylhomocysteinase (LuxS) CH55_1877 PF04262 Glutamate-cysteine ligase CH55_1878 PF09335 SNARE associated Golgi protein CH55_1879 PF13419 Haloacid dehalogenase-like hydrolase CH55_188 PF01230 HIT domain CH55_1884 PF02599 Global regulator protein family CH55_1885 PF01411 tRNA synthetases class II (A) CH55_1885 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH55_1885 PF02272 DHHA1 domain CH55_1886 PF02631 RecX family CH55_1887 PF00154 recA bacterial DNA recombination protein CH55_1888 PF02464 Competence-damaged protein CH55_1889 PF07690 Major Facilitator Superfamily CH55_189 PF07233 Protein of unknown function (DUF1425) CH55_1892 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH55_1892 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH55_1893 PF02779 Transketolase, pyrimidine binding domain CH55_1893 PF02780 Transketolase, C-terminal domain CH55_1894 PF00456 Transketolase, thiamine diphosphate binding domain CH55_1895 PF02653 Branched-chain amino acid transport system / permease component CH55_1896 PF00005 ABC transporter CH55_1899 PF00141 Peroxidase CH55_19 PF00419 Fimbrial protein CH55_190 PF13036 Peptidoglycan-synthase activator LpoB CH55_190 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH55_1900 PF07361 Cytochrome b562 CH55_1901 PF01292 Prokaryotic cytochrome b561 CH55_1902 PF02613 Nitrate reductase delta subunit CH55_1903 PF04976 DMSO reductase anchor subunit (DmsC) CH55_1904 PF12800 4Fe-4S binding domain CH55_1904 PF13247 4Fe-4S dicluster domain CH55_1905 PF01568 Molydopterin dinucleotide binding domain CH55_1905 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH55_1905 PF00384 Molybdopterin oxidoreductase CH55_1906 PF00596 Class II Aldolase and Adducin N-terminal domain CH55_1907 PF08220 DeoR-like helix-turn-helix domain CH55_1907 PF00455 DeoR C terminal sensor domain CH55_1909 PF01797 Transposase IS200 like CH55_191 PF01636 Phosphotransferase enzyme family CH55_1910 PF00005 ABC transporter CH55_1911 PF02653 Branched-chain amino acid transport system / permease component CH55_1912 PF02653 Branched-chain amino acid transport system / permease component CH55_1913 PF01261 Xylose isomerase-like TIM barrel CH55_1914 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH55_1914 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH55_1915 PF05683 Fumarase C-terminus CH55_1915 PF05681 Fumarate hydratase (Fumerase) CH55_1917 PF00557 Metallopeptidase family M24 CH55_1919 PF00593 TonB dependent receptor CH55_1919 PF07715 TonB-dependent Receptor Plug Domain CH55_192 PF00933 Glycosyl hydrolase family 3 N terminal domain CH55_1921 PF14376 Haem-binding domain CH55_1921 PF00034 Cytochrome c CH55_1921 PF03150 Di-haem cytochrome c peroxidase CH55_1922 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH55_1925 PF01022 Bacterial regulatory protein, arsR family CH55_1926 PF02040 Arsenical pump membrane protein CH55_1927 PF04198 Putative sugar-binding domain CH55_1927 PF13936 Helix-turn-helix domain CH55_1928 PF02734 DAK2 domain CH55_1929 PF02733 Dak1 domain CH55_193 PF05728 Uncharacterised protein family (UPF0227) CH55_1931 PF00107 Zinc-binding dehydrogenase CH55_1931 PF08240 Alcohol dehydrogenase GroES-like domain CH55_1932 PF02502 Ribose/Galactose Isomerase CH55_1933 PF01624 MutS domain I CH55_1933 PF00488 MutS domain V CH55_1933 PF05188 MutS domain II CH55_1933 PF05192 MutS domain III CH55_1933 PF05190 MutS family domain IV CH55_1934 PF04542 Sigma-70 region 2 CH55_1934 PF04539 Sigma-70 region 3 CH55_1934 PF04545 Sigma-70, region 4 CH55_1934 PF00140 Sigma-70 factor, region 1.2 CH55_1935 PF01476 LysM domain CH55_1935 PF01551 Peptidase family M23 CH55_1937 PF01975 Survival protein SurE CH55_1938 PF01142 tRNA pseudouridine synthase D (TruD) CH55_1939 PF02542 YgbB family CH55_194 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH55_1940 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CH55_1941 PF04977 Septum formation initiator CH55_1942 PF12084 Protein of unknown function (DUF3561) CH55_1944 PF00009 Elongation factor Tu GTP binding domain CH55_1945 PF01507 Phosphoadenosine phosphosulfate reductase family CH55_1946 PF10414 Sirohaem synthase dimerisation region CH55_1946 PF14824 Sirohaem biosynthesis protein central CH55_1946 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH55_1950 PF01507 Phosphoadenosine phosphosulfate reductase family CH55_1951 PF01507 Phosphoadenosine phosphosulfate reductase family CH55_1952 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH55_1952 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH55_1953 PF00667 FAD binding domain CH55_1953 PF00258 Flavodoxin CH55_1953 PF00175 Oxidoreductase NAD-binding domain CH55_1954 PF01242 6-pyruvoyl tetrahydropterin synthase CH55_1955 PF04055 Radical SAM superfamily CH55_1956 PF00080 Copper/zinc superoxide dismutase (SODC) CH55_1957 PF00113 Enolase, C-terminal TIM barrel domain CH55_1957 PF03952 Enolase, N-terminal domain CH55_1958 PF06418 CTP synthase N-terminus CH55_1958 PF00117 Glutamine amidotransferase class-I CH55_1959 PF03819 MazG nucleotide pyrophosphohydrolase domain CH55_1960 PF02824 TGS domain CH55_1960 PF04607 Region found in RelA / SpoT proteins CH55_1960 PF13291 ACT domain CH55_1961 PF00072 Response regulator receiver domain CH55_1961 PF01627 Hpt domain CH55_1961 PF00512 His Kinase A (phospho-acceptor) domain CH55_1961 PF00672 HAMP domain CH55_1961 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH55_1961 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH55_1962 PF00595 PDZ domain CH55_1963 PF01966 HD domain CH55_1963 PF13286 Phosphohydrolase-associated domain CH55_1964 PF01048 Phosphorylase superfamily CH55_1965 PF01497 Periplasmic binding protein CH55_1966 PF03458 UPF0126 domain CH55_1967 PF01521 Iron-sulphur cluster biosynthesis CH55_1968 PF00654 Voltage gated chloride channel CH55_1969 PF00202 Aminotransferase class-III CH55_1970 PF01032 FecCD transport family CH55_1971 PF01497 Periplasmic binding protein CH55_1972 PF00005 ABC transporter CH55_1973 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal CH55_1973 PF00912 Transglycosylase CH55_1973 PF00905 Penicillin binding protein transpeptidase domain CH55_1973 PF14814 Bifunctional transglycosylase second domain CH55_1974 PF00270 DEAD/DEAH box helicase CH55_1974 PF04408 Helicase associated domain (HA2) CH55_1974 PF00271 Helicase conserved C-terminal domain CH55_1974 PF08482 ATP-dependent helicase C-terminal CH55_1975 PF02834 LigT like Phosphoesterase CH55_1976 PF03749 Sugar fermentation stimulation protein RE domain CH55_1976 PF17746 SfsA N-terminal OB domain CH55_1977 PF01258 Prokaryotic dksA/traR C4-type zinc finger CH55_1978 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH55_1979 PF12626 Polymerase A arginine-rich C-terminus CH55_1979 PF12627 Probable RNA and SrmB- binding site of polymerase A CH55_1979 PF01743 Poly A polymerase head domain CH55_198 PF00872 Transposase, Mutator family CH55_1980 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CH55_1981 PF02548 Ketopantoate hydroxymethyltransferase CH55_1982 PF02569 Pantoate-beta-alanine ligase CH55_1983 PF02261 Aspartate decarboxylase CH55_1984 PF01522 Polysaccharide deacetylase CH55_1986 PF01061 ABC-2 type transporter CH55_1987 PF00005 ABC transporter CH55_1988 PF00484 Carbonic anhydrase CH55_1989 PF00156 Phosphoribosyl transferase domain CH55_199 PF05433 Glycine zipper 2TM domain CH55_1990 PF07731 Multicopper oxidase CH55_1990 PF07732 Multicopper oxidase CH55_1990 PF00394 Multicopper oxidase CH55_1990 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH55_1991 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) CH55_1992 PF17284 Spermidine synthase tetramerisation domain CH55_1993 PF02675 S-adenosylmethionine decarboxylase CH55_1994 PF00892 EamA-like transporter family CH55_1995 PF06062 Uncharacterised protein family (UPF0231) CH55_1996 PF06434 Aconitate hydratase 2 N-terminus CH55_1996 PF00330 Aconitase family (aconitate hydratase) CH55_1996 PF11791 Aconitate B N-terminal domain CH55_1997 PF01797 Transposase IS200 like CH55_1998 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH55_1998 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH55_1999 PF00364 Biotin-requiring enzyme CH55_1999 PF02817 e3 binding domain CH55_1999 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH55_2 PF03918 Cytochrome C biogenesis protein CH55_200 PF00270 DEAD/DEAH box helicase CH55_200 PF17757 UvrB interaction domain CH55_200 PF03461 TRCF domain CH55_200 PF00271 Helicase conserved C-terminal domain CH55_200 PF02559 CarD-like/TRCF domain CH55_2000 PF17831 Pyruvate dehydrogenase E1 component middle domain CH55_2000 PF00456 Transketolase, thiamine diphosphate binding domain CH55_2001 PF00392 Bacterial regulatory proteins, gntR family CH55_2001 PF07729 FCD domain CH55_2002 PF00324 Amino acid permease CH55_2003 PF17113 Regulatory signalling modulator protein AmpE CH55_2004 PF17113 Regulatory signalling modulator protein AmpE CH55_2005 PF01510 N-acetylmuramoyl-L-alanine amidase CH55_2006 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CH55_2006 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CH55_2007 PF07963 Prokaryotic N-terminal methylation motif CH55_2008 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CH55_2008 PF00437 Type II/IV secretion system protein CH55_2009 PF00482 Type II secretion system (T2SS), protein F CH55_201 PF02687 FtsX-like permease family CH55_201 PF12704 MacB-like periplasmic core domain CH55_2010 PF00478 IMP dehydrogenase / GMP reductase domain CH55_2011 PF01121 Dephospho-CoA kinase CH55_2012 PF07072 Cell division protein CH55_2013 PF03884 DNA gyrase inhibitor YacG CH55_2014 PF01797 Transposase IS200 like CH55_2015 PF00665 Integrase core domain CH55_2015 PF02796 Helix-turn-helix domain of resolvase CH55_2016 PF01695 IstB-like ATP binding protein CH55_2017 PF08676 MutL C terminal dimerisation domain CH55_2017 PF01119 DNA mismatch repair protein, C-terminal domain CH55_2019 PF00589 Phage integrase family CH55_2019 PF13356 Arm DNA-binding domain CH55_202 PF00005 ABC transporter CH55_2021 PF03739 Lipopolysaccharide export system permease LptF/LptG CH55_2022 PF03739 Lipopolysaccharide export system permease LptF/LptG CH55_2023 PF00883 Cytosol aminopeptidase family, catalytic domain CH55_2023 PF02789 Cytosol aminopeptidase family, N-terminal domain CH55_2024 PF04364 DNA polymerase III chi subunit, HolC CH55_2025 PF08264 Anticodon-binding domain of tRNA CH55_2025 PF00133 tRNA synthetases class I (I, L, M and V) CH55_2025 PF10458 Valyl tRNA synthetase tRNA binding arm CH55_2026 PF00583 Acetyltransferase (GNAT) family CH55_2027 PF06877 Regulator of ribonuclease activity B CH55_2028 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH55_2028 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH55_2029 PF04074 YhcH/YjgK/YiaL CH55_203 PF12704 MacB-like periplasmic core domain CH55_203 PF02687 FtsX-like permease family CH55_2032 PF00528 Binding-protein-dependent transport system inner membrane component CH55_2033 PF12911 N-terminal TM domain of oligopeptide transport permease C CH55_2033 PF00528 Binding-protein-dependent transport system inner membrane component CH55_2034 PF00005 ABC transporter CH55_2034 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH55_2035 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH55_2035 PF00005 ABC transporter CH55_2036 PF13597 Anaerobic ribonucleoside-triphosphate reductase CH55_2036 PF03477 ATP cone domain CH55_2039 PF07702 UTRA domain CH55_2039 PF00392 Bacterial regulatory proteins, gntR family CH55_204 PF00480 ROK family CH55_2040 PF06754 Phosphonate metabolism protein PhnG CH55_2041 PF05845 Bacterial phosphonate metabolism protein (PhnH) CH55_2042 PF05845 Bacterial phosphonate metabolism protein (PhnH) CH55_2043 PF05861 Bacterial phosphonate metabolism protein (PhnI) CH55_2044 PF06007 Phosphonate metabolism protein PhnJ CH55_2045 PF00005 ABC transporter CH55_2046 PF00005 ABC transporter CH55_2047 PF07969 Amidohydrolase family CH55_2049 PF12706 Beta-lactamase superfamily domain CH55_205 PF02146 Sir2 family CH55_2050 PF13460 NAD(P)H-binding CH55_2053 PF03459 TOBE domain CH55_2053 PF00005 ABC transporter CH55_2053 PF17912 MalK OB fold domain CH55_2054 PF00528 Binding-protein-dependent transport system inner membrane component CH55_2056 PF13416 Bacterial extracellular solute-binding protein CH55_2059 PF01541 GIY-YIG catalytic domain CH55_206 PF01546 Peptidase family M20/M25/M40 CH55_206 PF07687 Peptidase dimerisation domain CH55_2060 PF13508 Acetyltransferase (GNAT) domain CH55_2064 PF02321 Outer membrane efflux protein CH55_2064 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH55_2065 PF00873 AcrB/AcrD/AcrF family CH55_2066 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH55_2066 PF00529 HlyD membrane-fusion protein of T1SS CH55_2067 PF00529 HlyD membrane-fusion protein of T1SS CH55_2067 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH55_2068 PF00296 Luciferase-like monooxygenase CH55_207 PF08007 Cupin superfamily protein CH55_2070 PF00296 Luciferase-like monooxygenase CH55_2071 PF01381 Helix-turn-helix CH55_2073 PF03880 DbpA RNA binding domain CH55_2073 PF00270 DEAD/DEAH box helicase CH55_2073 PF12343 Cold shock protein DEAD box A CH55_2073 PF00271 Helicase conserved C-terminal domain CH55_2074 PF13181 Tetratricopeptide repeat CH55_2074 PF07719 Tetratricopeptide repeat CH55_2075 PF00013 KH domain CH55_2075 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CH55_2075 PF03725 3' exoribonuclease family, domain 2 CH55_2075 PF00575 S1 RNA binding domain CH55_2075 PF01138 3' exoribonuclease family, domain 1 CH55_2076 PF00665 Integrase core domain CH55_2076 PF13333 Integrase core domain CH55_2076 PF13276 HTH-like domain CH55_2078 PF00669 Bacterial flagellin N-terminal helical region CH55_2078 PF00700 Bacterial flagellin C-terminal helical region CH55_2079 PF00486 Transcriptional regulatory protein, C terminal CH55_2079 PF18500 CadC C-terminal domain 1 CH55_208 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH55_208 PF08918 PhoQ Sensor CH55_2083 PF00460 Flagella basal body rod protein CH55_2083 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH55_2085 PF02119 Flagellar P-ring protein CH55_2086 PF02107 Flagellar L-ring protein CH55_2087 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH55_2087 PF00460 Flagella basal body rod protein CH55_2088 PF00460 Flagella basal body rod protein CH55_2088 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH55_2089 PF00460 Flagella basal body rod protein CH55_2089 PF07559 Flagellar basal body protein FlaE CH55_2089 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH55_209 PF00072 Response regulator receiver domain CH55_209 PF00486 Transcriptional regulatory protein, C terminal CH55_2090 PF13860 FlgD Ig-like domain CH55_2090 PF03963 Flagellar hook capping protein - N-terminal region CH55_2090 PF13861 FlgD Tudor-like domain CH55_2091 PF00460 Flagella basal body rod protein CH55_2091 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH55_2092 PF00460 Flagella basal body rod protein CH55_2093 PF13144 Chaperone for flagella basal body P-ring formation CH55_2097 PF18269 T3SS EscN ATPase C-terminal domain CH55_2097 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH55_21 PF00892 EamA-like transporter family CH55_2100 PF01514 Secretory protein of YscJ/FliF family CH55_2100 PF08345 Flagellar M-ring protein C-terminal CH55_2101 PF02049 Flagellar hook-basal body complex protein FliE CH55_2102 PF00158 Sigma-54 interaction domain CH55_2102 PF00072 Response regulator receiver domain CH55_2102 PF02954 Bacterial regulatory protein, Fis family CH55_2104 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH55_2105 PF00813 FliP family CH55_2106 PF01313 Bacterial export proteins, family 3 CH55_2107 PF01311 Bacterial export proteins, family 1 CH55_2108 PF01312 FlhB HrpN YscU SpaS Family CH55_2109 PF00771 FHIPEP family CH55_211 PF00206 Lyase CH55_211 PF08328 Adenylosuccinate lyase C-terminal CH55_2112 PF01497 Periplasmic binding protein CH55_2113 PF00419 Fimbrial protein CH55_2113 PF09222 Fimbrial adhesin F17-AG, lectin domain CH55_2114 PF02753 Pili assembly chaperone PapD, C-terminal domain CH55_2114 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH55_2115 PF00577 Outer membrane usher protein CH55_2115 PF13953 PapC C-terminal domain CH55_2115 PF13954 PapC N-terminal domain CH55_2116 PF01797 Transposase IS200 like CH55_2119 PF13629 Pilus formation protein N terminal region CH55_2119 PF04972 BON domain CH55_2119 PF00263 Bacterial type II and III secretion system protein CH55_212 PF04356 Protein of unknown function (DUF489) CH55_2120 PF04972 BON domain CH55_2120 PF13629 Pilus formation protein N terminal region CH55_2120 PF00263 Bacterial type II and III secretion system protein CH55_2123 PF00437 Type II/IV secretion system protein CH55_2130 PF02472 Biopolymer transport protein ExbD/TolR CH55_2132 PF01618 MotA/TolQ/ExbB proton channel family CH55_2133 PF01053 Cys/Met metabolism PLP-dependent enzyme CH55_2134 PF09335 SNARE associated Golgi protein CH55_2135 PF06719 AraC-type transcriptional regulator N-terminus CH55_2135 PF12833 Helix-turn-helix domain CH55_2136 PF00465 Iron-containing alcohol dehydrogenase CH55_2137 PF00248 Aldo/keto reductase family CH55_2138 PF11842 Domain of unknown function (DUF3362) CH55_2138 PF04055 Radical SAM superfamily CH55_2138 PF08497 Radical SAM N-terminal CH55_2139 PF11842 Domain of unknown function (DUF3362) CH55_2139 PF04055 Radical SAM superfamily CH55_2139 PF08497 Radical SAM N-terminal CH55_214 PF00293 NUDIX domain CH55_2140 PF07732 Multicopper oxidase CH55_2140 PF07731 Multicopper oxidase CH55_2141 PF01553 Acyltransferase CH55_2142 PF03989 DNA gyrase C-terminal domain, beta-propeller CH55_2142 PF00521 DNA gyrase/topoisomerase IV, subunit A CH55_2143 PF02525 Flavodoxin-like fold CH55_2144 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_2144 PF03466 LysR substrate binding domain CH55_2145 PF01751 Toprim domain CH55_2145 PF00204 DNA gyrase B CH55_2145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH55_2145 PF00986 DNA gyrase B subunit, carboxyl terminus CH55_2146 PF05728 Uncharacterised protein family (UPF0227) CH55_2147 PF00149 Calcineurin-like phosphoesterase CH55_2148 PF06853 Protein of unknown function (DUF1249) CH55_2149 PF00293 NUDIX domain CH55_215 PF00849 RNA pseudouridylate synthase CH55_2150 PF02321 Outer membrane efflux protein CH55_2152 PF06693 Protein of unknown function (DUF1190) CH55_2153 PF03738 Glutathionylspermidine synthase preATP-grasp CH55_2154 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH55_2155 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CH55_2157 PF04380 Membrane fusogenic activity CH55_2158 PF13520 Amino acid permease CH55_2159 PF00294 pfkB family carbohydrate kinase CH55_2159 PF01467 Cytidylyltransferase-like CH55_216 PF00180 Isocitrate/isopropylmalate dehydrogenase CH55_2160 PF03710 Glutamate-ammonia ligase adenylyltransferase CH55_2160 PF08335 GlnD PII-uridylyltransferase CH55_2161 PF01928 CYTH domain CH55_2162 PF08239 Bacterial SH3 domain CH55_2163 PF01743 Poly A polymerase head domain CH55_2163 PF12627 Probable RNA and SrmB- binding site of polymerase A CH55_2163 PF01966 HD domain CH55_2164 PF02673 Bacitracin resistance protein BacA CH55_2165 PF02152 Dihydroneopterin aldolase CH55_2166 PF02660 Glycerol-3-phosphate acyltransferase CH55_2167 PF00814 Glycoprotease family CH55_2168 PF01165 Ribosomal protein S21 CH55_2169 PF10410 DnaB-helicase binding domain of primase CH55_2169 PF01807 CHC2 zinc finger CH55_2169 PF08278 DNA primase DnaG DnaB-binding CH55_2169 PF08275 DNA primase catalytic core, N-terminal domain CH55_217 PF00356 Bacterial regulatory proteins, lacI family CH55_217 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH55_2170 PF04545 Sigma-70, region 4 CH55_2170 PF00140 Sigma-70 factor, region 1.2 CH55_2170 PF04542 Sigma-70 region 2 CH55_2170 PF04546 Sigma-70, non-essential region CH55_2170 PF03979 Sigma-70 factor, region 1.1 CH55_2170 PF04539 Sigma-70 region 3 CH55_2181 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_2181 PF03466 LysR substrate binding domain CH55_2185 PF01042 Endoribonuclease L-PSP CH55_219 PF08447 PAS fold CH55_219 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH55_2193 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH55_2193 PF00529 HlyD membrane-fusion protein of T1SS CH55_2194 PF04632 Fusaric acid resistance protein family CH55_2196 PF00933 Glycosyl hydrolase family 3 N terminal domain CH55_2196 PF01915 Glycosyl hydrolase family 3 C-terminal domain CH55_2196 PF14310 Fibronectin type III-like domain CH55_2198 PF00528 Binding-protein-dependent transport system inner membrane component CH55_2199 PF00528 Binding-protein-dependent transport system inner membrane component CH55_220 PF05368 NmrA-like family CH55_2200 PF13416 Bacterial extracellular solute-binding protein CH55_2201 PF00356 Bacterial regulatory proteins, lacI family CH55_2202 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CH55_2203 PF17912 MalK OB fold domain CH55_2203 PF03459 TOBE domain CH55_2203 PF00005 ABC transporter CH55_2207 PF04829 Pre-toxin domain with VENN motif CH55_2207 PF05860 haemagglutination activity domain CH55_2207 PF13018 Extended Signal Peptide of Type V secretion system CH55_2207 PF13332 Hemagglutinin repeat CH55_2209 PF13018 Extended Signal Peptide of Type V secretion system CH55_2209 PF13332 Hemagglutinin repeat CH55_2209 PF05860 haemagglutination activity domain CH55_2209 PF04829 Pre-toxin domain with VENN motif CH55_221 PF01638 HxlR-like helix-turn-helix CH55_2211 PF04829 Pre-toxin domain with VENN motif CH55_2211 PF13332 Hemagglutinin repeat CH55_2211 PF05860 haemagglutination activity domain CH55_2211 PF13018 Extended Signal Peptide of Type V secretion system CH55_2212 PF13018 Extended Signal Peptide of Type V secretion system CH55_2212 PF05860 haemagglutination activity domain CH55_2212 PF04829 Pre-toxin domain with VENN motif CH55_2212 PF13332 Hemagglutinin repeat CH55_2213 PF04829 Pre-toxin domain with VENN motif CH55_2213 PF05860 haemagglutination activity domain CH55_2213 PF13332 Hemagglutinin repeat CH55_2213 PF13018 Extended Signal Peptide of Type V secretion system CH55_2214 PF08479 POTRA domain, ShlB-type CH55_2214 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH55_2214 PF17287 POTRA domain CH55_2215 PF00092 von Willebrand factor type A domain CH55_2216 PF02342 TerD domain CH55_2218 PF00092 von Willebrand factor type A domain CH55_2221 PF03729 Short repeat of unknown function (DUF308) CH55_2222 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH55_2222 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH55_2223 PF05175 Methyltransferase small domain CH55_2224 PF13018 Extended Signal Peptide of Type V secretion system CH55_2224 PF03797 Autotransporter beta-domain CH55_2224 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH55_2225 PF03797 Autotransporter beta-domain CH55_2226 PF01863 Protein of unknown function DUF45 CH55_2227 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH55_2228 PF00375 Sodium:dicarboxylate symporter family CH55_223 PF00328 Histidine phosphatase superfamily (branch 2) CH55_2230 PF01797 Transposase IS200 like CH55_2232 PF00149 Calcineurin-like phosphoesterase CH55_2233 PF04379 ApaG domain CH55_2234 PF00398 Ribosomal RNA adenine dimethylase CH55_2235 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CH55_2236 PF00639 PPIC-type PPIASE domain CH55_2236 PF09312 SurA N-terminal domain CH55_2237 PF04453 LPS transport system D CH55_2237 PF03968 OstA-like protein CH55_2238 PF00226 DnaJ domain CH55_2238 PF05099 Tellurite resistance protein TerB CH55_2239 PF00849 RNA pseudouridylate synthase CH55_224 PF14001 YdfZ protein CH55_2248 PF00004 ATPase family associated with various cellular activities (AAA) CH55_2248 PF10431 C-terminal, D2-small domain, of ClpB protein CH55_2248 PF17871 AAA lid domain CH55_2248 PF07724 AAA domain (Cdc48 subfamily) CH55_2249 PF04717 Type VI secretion system, phage-baseplate injector CH55_2257 PF05736 OprF membrane domain CH55_2257 PF00691 OmpA family CH55_226 PF01037 Lrp/AsnC ligand binding domain CH55_226 PF13404 AsnC-type helix-turn-helix domain CH55_2260 PF18339 RapA N-terminal Tudor like domain 1 CH55_2260 PF00176 SNF2 family N-terminal domain CH55_2260 PF18337 RapA N-terminal Tudor like domain CH55_2260 PF00271 Helicase conserved C-terminal domain CH55_2260 PF12137 RNA polymerase recycling family C-terminal CH55_2261 PF03104 DNA polymerase family B, exonuclease domain CH55_2261 PF00136 DNA polymerase family B CH55_2262 PF09335 SNARE associated Golgi protein CH55_2263 PF00005 ABC transporter CH55_2264 PF00528 Binding-protein-dependent transport system inner membrane component CH55_2267 PF12793 Sugar transport-related sRNA regulator N-term CH55_2267 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH55_2268 PF07690 Major Facilitator Superfamily CH55_2269 PF00694 Aconitase C-terminal domain CH55_227 PF10777 Inner membrane protein YlaC CH55_2270 PF00330 Aconitase family (aconitate hydratase) CH55_2271 PF00180 Isocitrate/isopropylmalate dehydrogenase CH55_2272 PF00682 HMGL-like CH55_2272 PF08502 LeuA allosteric (dimerisation) domain CH55_2276 PF03466 LysR substrate binding domain CH55_2276 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_2277 PF00501 AMP-binding enzyme CH55_2278 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH55_2278 PF00205 Thiamine pyrophosphate enzyme, central domain CH55_2278 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH55_2279 PF10369 Small subunit of acetolactate synthase CH55_228 PF02801 Beta-ketoacyl synthase, C-terminal domain CH55_228 PF08240 Alcohol dehydrogenase GroES-like domain CH55_228 PF00109 Beta-ketoacyl synthase, N-terminal domain CH55_228 PF16197 Ketoacyl-synthetase C-terminal extension CH55_228 PF00107 Zinc-binding dehydrogenase CH55_228 PF00550 Phosphopantetheine attachment site CH55_228 PF00698 Acyl transferase domain CH55_228 PF08659 KR domain CH55_228 PF14765 Polyketide synthase dehydratase CH55_2280 PF01797 Transposase IS200 like CH55_2281 PF00356 Bacterial regulatory proteins, lacI family CH55_2281 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH55_2282 PF06610 L-alanine exporter CH55_2283 PF02381 MraZ protein, putative antitoxin-like CH55_2284 PF01795 MraW methylase family CH55_2285 PF04999 Cell division protein FtsL CH55_2286 PF03717 Penicillin-binding Protein dimerisation domain CH55_2286 PF00905 Penicillin binding protein transpeptidase domain CH55_2287 PF02875 Mur ligase family, glutamate ligase domain CH55_2287 PF01225 Mur ligase family, catalytic domain CH55_2287 PF08245 Mur ligase middle domain CH55_2288 PF01225 Mur ligase family, catalytic domain CH55_2288 PF02875 Mur ligase family, glutamate ligase domain CH55_2288 PF08245 Mur ligase middle domain CH55_2289 PF00953 Glycosyl transferase family 4 CH55_2289 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CH55_229 PF02837 Glycosyl hydrolases family 2, sugar binding domain CH55_229 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CH55_229 PF00703 Glycosyl hydrolases family 2 CH55_229 PF16353 Domain of unknown function(DUF4981) CH55_229 PF02929 Beta galactosidase small chain CH55_2290 PF02875 Mur ligase family, glutamate ligase domain CH55_2290 PF08245 Mur ligase middle domain CH55_2291 PF01098 Cell cycle protein CH55_2292 PF04101 Glycosyltransferase family 28 C-terminal domain CH55_2292 PF03033 Glycosyltransferase family 28 N-terminal domain CH55_2293 PF01225 Mur ligase family, catalytic domain CH55_2293 PF02875 Mur ligase family, glutamate ligase domain CH55_2293 PF08245 Mur ligase middle domain CH55_2294 PF07478 D-ala D-ala ligase C-terminus CH55_2294 PF01820 D-ala D-ala ligase N-terminus CH55_2295 PF03799 Cell division protein FtsQ CH55_2295 PF08478 POTRA domain, FtsQ-type CH55_2296 PF02491 SHS2 domain inserted in FTSA CH55_2297 PF00091 Tubulin/FtsZ family, GTPase domain CH55_2297 PF12327 FtsZ family, C-terminal domain CH55_2298 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CH55_23 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH55_23 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH55_23 PF11890 Domain of unknown function (DUF3410) CH55_230 PF00313 'Cold-shock' DNA-binding domain CH55_2300 PF06558 Secretion monitor precursor protein (SecM) CH55_2301 PF02810 SEC-C motif CH55_2301 PF07517 SecA DEAD-like domain CH55_2301 PF01043 SecA preprotein cross-linking domain CH55_2301 PF07516 SecA Wing and Scaffold domain CH55_2302 PF00293 NUDIX domain CH55_2303 PF01695 IstB-like ATP binding protein CH55_2304 PF00665 Integrase core domain CH55_2304 PF02796 Helix-turn-helix domain of resolvase CH55_2305 PF13409 Glutathione S-transferase, N-terminal domain CH55_2306 PF07681 DoxX CH55_2308 PF07332 Putative Actinobacterial Holin-X, holin superfamily III CH55_2309 PF05957 Bacterial protein of unknown function (DUF883) CH55_231 PF10781 Dextransucrase DSRB CH55_2311 PF13721 SecD export protein N-terminal TM region CH55_2312 PF09335 SNARE associated Golgi protein CH55_2314 PF00392 Bacterial regulatory proteins, gntR family CH55_2314 PF07729 FCD domain CH55_2315 PF07690 Major Facilitator Superfamily CH55_2316 PF02614 Glucuronate isomerase CH55_2317 PF01232 Mannitol dehydrogenase Rossmann domain CH55_2317 PF08125 Mannitol dehydrogenase C-terminal domain CH55_2318 PF08666 SAF domain CH55_2318 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CH55_2319 PF10688 Bacterial inner membrane protein CH55_232 PF00672 HAMP domain CH55_232 PF02203 Tar ligand binding domain homologue CH55_232 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH55_2320 PF01797 Transposase IS200 like CH55_2321 PF00186 Dihydrofolate reductase CH55_2322 PF12821 Threonine/Serine exporter, ThrE CH55_2323 PF06738 Putative threonine/serine exporter CH55_2324 PF01810 LysE type translocator CH55_2325 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH55_2325 PF02142 MGS-like domain CH55_2325 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH55_2326 PF00117 Glutamine amidotransferase class-I CH55_2326 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CH55_2327 PF01113 Dihydrodipicolinate reductase, N-terminus CH55_2327 PF05173 Dihydrodipicolinate reductase, C-terminus CH55_2328 PF01797 Transposase IS200 like CH55_2329 PF02401 LytB protein CH55_233 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH55_233 PF02203 Tar ligand binding domain homologue CH55_233 PF00672 HAMP domain CH55_2330 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH55_2331 PF01252 Signal peptidase (SPase) II CH55_2332 PF08264 Anticodon-binding domain of tRNA CH55_2332 PF00133 tRNA synthetases class I (I, L, M and V) CH55_2332 PF06827 Zinc finger found in FPG and IleRS CH55_2333 PF06574 FAD synthetase CH55_2333 PF01687 Riboflavin kinase CH55_2334 PF01649 Ribosomal protein S20 CH55_2335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_2335 PF03466 LysR substrate binding domain CH55_2336 PF06965 Na+/H+ antiporter 1 CH55_2337 PF00226 DnaJ domain CH55_2337 PF00684 DnaJ central domain CH55_2337 PF01556 DnaJ C terminal domain CH55_2338 PF00012 Hsp70 protein CH55_2339 PF01184 GPR1/FUN34/yaaH family CH55_234 PF02308 MgtC family CH55_2341 PF07690 Major Facilitator Superfamily CH55_2342 PF00994 Probable molybdopterin binding domain CH55_2343 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH55_2344 PF03883 Peroxide stress protein YaaA CH55_2346 PF00291 Pyridoxal-phosphate dependent enzyme CH55_2346 PF14821 Threonine synthase N terminus CH55_2347 PF00288 GHMP kinases N terminal domain CH55_2347 PF08544 GHMP kinases C terminal CH55_2348 PF00742 Homoserine dehydrogenase CH55_2348 PF00696 Amino acid kinase family CH55_2348 PF01842 ACT domain CH55_2348 PF03447 Homoserine dehydrogenase, NAD binding domain CH55_2348 PF13840 ACT domain CH55_235 PF00690 Cation transporter/ATPase, N-terminus CH55_235 PF00689 Cation transporting ATPase, C-terminus CH55_2350 PF00072 Response regulator receiver domain CH55_2350 PF00486 Transcriptional regulatory protein, C terminal CH55_2351 PF05981 CreA protein CH55_2353 PF00300 Histidine phosphatase superfamily (branch 1) CH55_2354 PF06445 GyrI-like small molecule binding domain CH55_2354 PF12833 Helix-turn-helix domain CH55_2355 PF01371 Trp repressor protein CH55_2356 PF01931 Protein of unknown function DUF84 CH55_2357 PF14718 Soluble lytic murein transglycosylase L domain CH55_2357 PF01464 Transglycosylase SLT domain CH55_2358 PF00689 Cation transporting ATPase, C-terminus CH55_2358 PF00690 Cation transporter/ATPase, N-terminus CH55_236 PF00690 Cation transporter/ATPase, N-terminus CH55_236 PF00689 Cation transporting ATPase, C-terminus CH55_2360 PF17152 Periplasmic sensor domain CH55_2360 PF00990 Diguanylate cyclase, GGDEF domain CH55_2361 PF00691 OmpA family CH55_2362 PF12848 ABC transporter CH55_2362 PF00005 ABC transporter CH55_2363 PF12848 ABC transporter CH55_2363 PF00005 ABC transporter CH55_2365 PF01381 Helix-turn-helix CH55_2365 PF13521 AAA domain CH55_2366 PF18073 Rubredoxin metal binding domain CH55_2367 PF18429 Domain of unknown function (DUF5609) CH55_2368 PF10144 Bacterial virulence factor haemolysin CH55_2369 PF01048 Phosphorylase superfamily CH55_237 PF05247 Flagellar transcriptional activator (FlhD) CH55_2370 PF01676 Metalloenzyme superfamily CH55_2371 PF00591 Glycosyl transferase family, a/b domain CH55_2371 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CH55_2371 PF02885 Glycosyl transferase family, helical bundle domain CH55_2372 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CH55_2372 PF00591 Glycosyl transferase family, a/b domain CH55_2372 PF02885 Glycosyl transferase family, helical bundle domain CH55_2373 PF01791 DeoC/LacD family aldolase CH55_2374 PF07662 Na+ dependent nucleoside transporter C-terminus CH55_2374 PF01773 Na+ dependent nucleoside transporter N-terminus CH55_2374 PF07670 Nucleoside recognition CH55_2375 PF01026 TatD related DNase CH55_2376 PF01026 TatD related DNase CH55_2377 PF01734 Patatin-like phospholipase CH55_2378 PF07043 Protein of unknown function (DUF1328) CH55_2379 PF04972 BON domain CH55_238 PF05280 Flagellar transcriptional activator (FlhC) CH55_2380 PF00009 Elongation factor Tu GTP binding domain CH55_2380 PF03144 Elongation factor Tu domain 2 CH55_2380 PF16658 Class II release factor RF3, C-terminal domain CH55_2381 PF00583 Acetyltransferase (GNAT) family CH55_2382 PF03603 DNA polymerase III psi subunit CH55_2383 PF08468 Methyltransferase small domain N-terminal CH55_2383 PF05175 Methyltransferase small domain CH55_2385 PF07256 Protein of unknown function (DUF1435) CH55_2386 PF00990 Diguanylate cyclase, GGDEF domain CH55_2387 PF01095 Pectinesterase CH55_2389 PF00873 AcrB/AcrD/AcrF family CH55_239 PF01618 MotA/TolQ/ExbB proton channel family CH55_2390 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH55_2393 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH55_2394 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH55_2394 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH55_2395 PF04198 Putative sugar-binding domain CH55_2395 PF00325 Bacterial regulatory proteins, crp family CH55_2396 PF04198 Putative sugar-binding domain CH55_2396 PF00325 Bacterial regulatory proteins, crp family CH55_2397 PF00005 ABC transporter CH55_2398 PF02653 Branched-chain amino acid transport system / permease component CH55_2399 PF02653 Branched-chain amino acid transport system / permease component CH55_24 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH55_24 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH55_240 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH55_240 PF00691 OmpA family CH55_2400 PF02653 Branched-chain amino acid transport system / permease component CH55_2401 PF13407 Periplasmic binding protein domain CH55_2402 PF01791 DeoC/LacD family aldolase CH55_2403 PF03992 Antibiotic biosynthesis monooxygenase CH55_2404 PF10696 Protein of unknown function (DUF2501) CH55_2405 PF05524 PEP-utilising enzyme, N-terminal CH55_2405 PF00381 PTS HPr component phosphorylation site CH55_2405 PF00391 PEP-utilising enzyme, mobile domain CH55_2405 PF02896 PEP-utilising enzyme, TIM barrel domain CH55_2405 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH55_2407 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH55_2408 PF12833 Helix-turn-helix domain CH55_2409 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH55_241 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH55_241 PF01627 Hpt domain CH55_241 PF01584 CheW-like domain CH55_241 PF09078 CheY binding CH55_241 PF02895 Signal transducing histidine kinase, homodimeric domain CH55_2411 PF05987 Bacterial protein of unknown function (DUF898) CH55_2415 PF00665 Integrase core domain CH55_242 PF01584 CheW-like domain CH55_2420 PF01555 DNA methylase CH55_2421 PF01527 Transposase CH55_2423 PF07728 AAA domain (dynein-related subfamily) CH55_2423 PF12102 Domain of unknown function (DUF3578) CH55_2424 PF00665 Integrase core domain CH55_2424 PF02796 Helix-turn-helix domain of resolvase CH55_2425 PF01695 IstB-like ATP binding protein CH55_2426 PF01695 IstB-like ATP binding protein CH55_2427 PF02580 D-Tyr-tRNA(Tyr) deacylase CH55_2428 PF03631 Virulence factor BrkB CH55_2429 PF13419 Haloacid dehalogenase-like hydrolase CH55_243 PF07690 Major Facilitator Superfamily CH55_2431 PF00120 Glutamine synthetase, catalytic domain CH55_2431 PF03951 Glutamine synthetase, beta-Grasp domain CH55_2432 PF00512 His Kinase A (phospho-acceptor) domain CH55_2432 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH55_2432 PF00989 PAS fold CH55_2433 PF00072 Response regulator receiver domain CH55_2433 PF02954 Bacterial regulatory protein, Fis family CH55_2433 PF00158 Sigma-54 interaction domain CH55_2434 PF06969 HemN C-terminal domain CH55_2434 PF04055 Radical SAM superfamily CH55_2435 PF04220 Der GTPase activator (YihI) CH55_2436 PF01926 50S ribosome-binding GTPase CH55_2437 PF01797 Transposase IS200 like CH55_2438 PF01797 Transposase IS200 like CH55_2439 PF01367 5'-3' exonuclease, C-terminal SAM fold CH55_2439 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH55_2439 PF00476 DNA polymerase family A CH55_2439 PF01612 3'-5' exonuclease CH55_244 PF01042 Endoribonuclease L-PSP CH55_2440 PF01323 DSBA-like thioredoxin domain CH55_2441 PF01636 Phosphotransferase enzyme family CH55_2442 PF06288 Protein of unknown function (DUF1040) CH55_2443 PF12804 MobA-like NTP transferase domain CH55_2444 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CH55_2445 PF00872 Transposase, Mutator family CH55_2451 PF02796 Helix-turn-helix domain of resolvase CH55_2451 PF00665 Integrase core domain CH55_2453 PF01695 IstB-like ATP binding protein CH55_2454 PF01695 IstB-like ATP binding protein CH55_2455 PF13409 Glutathione S-transferase, N-terminal domain CH55_2456 PF03466 LysR substrate binding domain CH55_2456 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_2457 PF02678 Pirin CH55_2457 PF17954 Quercetinase C-terminal cupin domain CH55_2458 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH55_2459 PF04348 LppC putative lipoprotein CH55_246 PF08348 YheO-like PAS domain CH55_246 PF13309 HTH domain CH55_2460 PF02021 Uncharacterised protein family UPF0102 CH55_2461 PF13580 SIS domain CH55_2462 PF04972 BON domain CH55_2463 PF00912 Transglycosylase CH55_2465 PF18415 Histidine kinase receptor ArcB trans-membrane domain CH55_2465 PF00512 His Kinase A (phospho-acceptor) domain CH55_2465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH55_2465 PF01627 Hpt domain CH55_2465 PF00072 Response regulator receiver domain CH55_2465 PF00989 PAS fold CH55_2466 PF16199 Radical_SAM C-terminal domain CH55_2466 PF04055 Radical SAM superfamily CH55_2467 PF01645 Conserved region in glutamate synthase CH55_2467 PF01493 GXGXG motif CH55_2467 PF04898 Glutamate synthase central domain CH55_2467 PF00310 Glutamine amidotransferases class-II CH55_2468 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH55_2468 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH55_2469 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH55_2469 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH55_247 PF12951 Passenger-associated-transport-repeat CH55_2471 PF04386 Stringent starvation protein B CH55_2472 PF00043 Glutathione S-transferase, C-terminal domain CH55_2472 PF02798 Glutathione S-transferase, N-terminal domain CH55_2473 PF00380 Ribosomal protein S9/S16 CH55_2474 PF00572 Ribosomal protein L13 CH55_2475 PF03969 AFG1-like ATPase CH55_2477 PF06295 Protein of unknown function (DUF1043) CH55_2478 PF00595 PDZ domain CH55_2478 PF13180 PDZ domain CH55_2479 PF01797 Transposase IS200 like CH55_248 PF12951 Passenger-associated-transport-repeat CH55_2480 PF13180 PDZ domain CH55_2481 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH55_2482 PF01722 BolA-like protein CH55_2483 PF13466 STAS domain CH55_2484 PF05494 MlaC protein CH55_2485 PF02470 MlaD protein CH55_2486 PF02405 Permease MlaE CH55_2487 PF00005 ABC transporter CH55_2488 PF01699 Sodium/calcium exchanger protein CH55_2489 PF01380 SIS domain CH55_2489 PF00571 CBS domain CH55_2491 PF06835 Lipopolysaccharide-assembly, LptC-related CH55_2492 PF03968 OstA-like protein CH55_2493 PF00005 ABC transporter CH55_2493 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH55_2494 PF04963 Sigma-54 factor, core binding domain CH55_2494 PF04552 Sigma-54, DNA binding domain CH55_2494 PF00309 Sigma-54 factor, Activator interacting domain (AID) CH55_2495 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH55_2496 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH55_2497 PF03668 P-loop ATPase protein family CH55_2498 PF00381 PTS HPr component phosphorylation site CH55_2499 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH55_2499 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH55_25 PF01416 tRNA pseudouridine synthase CH55_2500 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CH55_2500 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CH55_2501 PF01042 Endoribonuclease L-PSP CH55_2503 PF00356 Bacterial regulatory proteins, lacI family CH55_2504 PF00367 phosphotransferase system, EIIB CH55_2504 PF02378 Phosphotransferase system, EIIC CH55_2505 PF11941 Domain of unknown function (DUF3459) CH55_2505 PF00128 Alpha amylase, catalytic domain CH55_2506 PF14760 Rnk N-terminus CH55_2506 PF01272 Transcription elongation factor, GreA/GreB, C-term CH55_2507 PF07361 Cytochrome b562 CH55_2509 PF01523 Putative modulator of DNA gyrase CH55_251 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH55_251 PF02203 Tar ligand binding domain homologue CH55_251 PF00672 HAMP domain CH55_2510 PF04751 Protein of unknown function (DUF615) CH55_2511 PF01337 Barstar (barnase inhibitor) CH55_2513 PF00171 Aldehyde dehydrogenase family CH55_2514 PF00171 Aldehyde dehydrogenase family CH55_2515 PF04632 Fusaric acid resistance protein family CH55_2516 PF13533 Biotin-lipoyl like CH55_2517 PF07869 Protein of unknown function (DUF1656) CH55_2518 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_2518 PF03466 LysR substrate binding domain CH55_252 PF02203 Tar ligand binding domain homologue CH55_252 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH55_252 PF00672 HAMP domain CH55_2521 PF18413 Neuraminidase-like domain CH55_2521 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain CH55_2522 PF12256 Insecticide toxin TcdB middle/N-terminal region CH55_2522 PF12255 Insecticide toxin TcdB middle/C-terminal region CH55_2522 PF03534 Salmonella virulence plasmid 65kDa B protein CH55_2526 PF05785 Rho-activating domain of cytotoxic necrotizing factor CH55_2526 PF18807 Tripartite Tc toxins repeat CH55_2528 PF05785 Rho-activating domain of cytotoxic necrotizing factor CH55_2528 PF18807 Tripartite Tc toxins repeat CH55_2529 PF01523 Putative modulator of DNA gyrase CH55_253 PF01739 CheR methyltransferase, SAM binding domain CH55_253 PF03705 CheR methyltransferase, all-alpha domain CH55_2530 PF00795 Carbon-nitrogen hydrolase CH55_2531 PF13502 AsmA-like C-terminal region CH55_2531 PF13116 Protein of unknown function CH55_2532 PF10150 Ribonuclease E/G family CH55_2532 PF00575 S1 RNA binding domain CH55_2533 PF02545 Maf-like protein CH55_2534 PF04093 rod shape-determining protein MreD CH55_2535 PF04085 rod shape-determining protein MreC CH55_2537 PF00563 EAL domain CH55_2537 PF00990 Diguanylate cyclase, GGDEF domain CH55_2537 PF17157 Gammaproteobacterial periplasmic sensor domain CH55_2538 PF00107 Zinc-binding dehydrogenase CH55_2538 PF08240 Alcohol dehydrogenase GroES-like domain CH55_2539 PF00174 Oxidoreductase molybdopterin binding domain CH55_254 PF00072 Response regulator receiver domain CH55_254 PF01339 CheB methylesterase CH55_2540 PF01794 Ferric reductase like transmembrane component CH55_2541 PF01220 Dehydroquinase class II CH55_2542 PF00364 Biotin-requiring enzyme CH55_2543 PF02785 Biotin carboxylase C-terminal domain CH55_2543 PF00289 Biotin carboxylase, N-terminal domain CH55_2543 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH55_2545 PF06196 Protein of unknown function (DUF997) CH55_2546 PF00474 Sodium:solute symporter family CH55_2548 PF01207 Dihydrouridine synthase (Dus) CH55_2549 PF02954 Bacterial regulatory protein, Fis family CH55_255 PF00072 Response regulator receiver domain CH55_2552 PF07690 Major Facilitator Superfamily CH55_2553 PF02627 Carboxymuconolactone decarboxylase family CH55_2554 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH55_2554 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CH55_2555 PF00753 Metallo-beta-lactamase superfamily CH55_2556 PF05433 Glycine zipper 2TM domain CH55_2557 PF00313 'Cold-shock' DNA-binding domain CH55_2558 PF00313 'Cold-shock' DNA-binding domain CH55_2559 PF01797 Transposase IS200 like CH55_256 PF04344 Chemotaxis phosphatase, CheZ CH55_2562 PF02798 Glutathione S-transferase, N-terminal domain CH55_2563 PF00571 CBS domain CH55_2563 PF01380 SIS domain CH55_2564 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH55_2564 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH55_2566 PF02653 Branched-chain amino acid transport system / permease component CH55_2567 PF00005 ABC transporter CH55_2569 PF03279 Bacterial lipid A biosynthesis acyltransferase CH55_257 PF01510 N-acetylmuramoyl-L-alanine amidase CH55_2571 PF00999 Sodium/hydrogen exchanger family CH55_2572 PF00860 Permease family CH55_2573 PF04221 RelB antitoxin CH55_2574 PF00005 ABC transporter CH55_2575 PF00528 Binding-protein-dependent transport system inner membrane component CH55_2576 PF00296 Luciferase-like monooxygenase CH55_2577 PF09084 NMT1/THI5 like CH55_2578 PF03358 NADPH-dependent FMN reductase CH55_258 PF13018 Extended Signal Peptide of Type V secretion system CH55_258 PF03895 YadA-like membrane anchor domain CH55_258 PF05662 Coiled stalk of trimeric autotransporter adhesin CH55_258 PF05658 Head domain of trimeric autotransporter adhesin CH55_2580 PF00294 pfkB family carbohydrate kinase CH55_2581 PF05025 RbsD / FucU transport protein family CH55_2582 PF02311 AraC-like ligand binding domain CH55_2582 PF12833 Helix-turn-helix domain CH55_2583 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH55_2583 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH55_2586 PF05593 RHS Repeat CH55_2586 PF03527 RHS protein CH55_2588 PF04717 Type VI secretion system, phage-baseplate injector CH55_259 PF13018 Extended Signal Peptide of Type V secretion system CH55_259 PF03895 YadA-like membrane anchor domain CH55_259 PF05658 Head domain of trimeric autotransporter adhesin CH55_259 PF05662 Coiled stalk of trimeric autotransporter adhesin CH55_2594 PF03527 RHS protein CH55_2597 PF04717 Type VI secretion system, phage-baseplate injector CH55_26 PF09335 SNARE associated Golgi protein CH55_2604 PF10431 C-terminal, D2-small domain, of ClpB protein CH55_2604 PF17871 AAA lid domain CH55_2604 PF07724 AAA domain (Cdc48 subfamily) CH55_2604 PF00004 ATPase family associated with various cellular activities (AAA) CH55_2612 PF13333 Integrase core domain CH55_2612 PF00665 Integrase core domain CH55_2612 PF13276 HTH-like domain CH55_2615 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CH55_2615 PF01266 FAD dependent oxidoreductase CH55_2616 PF00343 Carbohydrate phosphorylase CH55_2617 PF00534 Glycosyl transferases group 1 CH55_2617 PF08323 Starch synthase catalytic domain CH55_2618 PF08323 Starch synthase catalytic domain CH55_2618 PF00534 Glycosyl transferases group 1 CH55_2619 PF00483 Nucleotidyl transferase CH55_262 PF00842 Alanine racemase, C-terminal domain CH55_262 PF01168 Alanine racemase, N-terminal domain CH55_2620 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH55_2620 PF00128 Alpha amylase, catalytic domain CH55_2620 PF18390 Glycogen debranching enzyme C-terminal domain CH55_2621 PF00128 Alpha amylase, catalytic domain CH55_2621 PF02806 Alpha amylase, C-terminal all-beta domain CH55_2621 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH55_2622 PF06580 Histidine kinase CH55_2622 PF07694 5TMR of 5TMR-LYT CH55_2623 PF09134 Invasin, domain 3 CH55_2623 PF11924 Inverse autotransporter, beta-domain CH55_2623 PF02369 Bacterial Ig-like domain (group 1) CH55_2623 PF07979 Intimin C-type lectin domain CH55_2628 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH55_2628 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH55_2629 PF01914 MarC family integral membrane protein CH55_2633 PF01202 Shikimate kinase CH55_2634 PF02447 GntP family permease CH55_2635 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH55_2635 PF00356 Bacterial regulatory proteins, lacI family CH55_2636 PF17954 Quercetinase C-terminal cupin domain CH55_2636 PF02678 Pirin CH55_2638 PF00486 Transcriptional regulatory protein, C terminal CH55_2638 PF00072 Response regulator receiver domain CH55_2640 PF01116 Fructose-bisphosphate aldolase class-II CH55_2642 PF13407 Periplasmic binding protein domain CH55_2643 PF02653 Branched-chain amino acid transport system / permease component CH55_2644 PF00005 ABC transporter CH55_2645 PF08448 PAS fold CH55_2645 PF13188 PAS domain CH55_2645 PF00072 Response regulator receiver domain CH55_2645 PF00512 His Kinase A (phospho-acceptor) domain CH55_2645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH55_2647 PF01384 Phosphate transporter family CH55_2649 PF10625 Universal stress protein B (UspB) CH55_2650 PF00582 Universal stress protein family CH55_2651 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH55_2651 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CH55_2652 PF08548 Peptidase M10 serralysin C terminal CH55_2652 PF00413 Matrixin CH55_2652 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CH55_2653 PF04445 Putative SAM-dependent methyltransferase CH55_2654 PF01432 Peptidase family M3 CH55_2655 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CH55_2656 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH55_2656 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH55_2657 PF17853 GGDEF-like domain CH55_2657 PF05651 Putative sugar diacid recognition CH55_2657 PF13556 PucR C-terminal helix-turn-helix domain CH55_2658 PF02447 GntP family permease CH55_2659 PF02595 Glycerate kinase family CH55_2664 PF03631 Virulence factor BrkB CH55_2665 PF05170 AsmA family CH55_2666 PF02611 CDP-diacylglycerol pyrophosphatase CH55_2667 PF05170 AsmA family CH55_2668 PF00563 EAL domain CH55_2669 PF01361 Tautomerase enzyme CH55_2670 PF00294 pfkB family carbohydrate kinase CH55_2671 PF05193 Peptidase M16 inactive domain CH55_2671 PF00675 Insulinase (Peptidase family M16) CH55_2672 PF00375 Sodium:dicarboxylate symporter family CH55_2674 PF06917 Periplasmic pectate lyase CH55_2675 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH55_2676 PF00990 Diguanylate cyclase, GGDEF domain CH55_2676 PF00672 HAMP domain CH55_2676 PF17154 Gammaproteobacterial periplasmic sensor domain CH55_2676 PF00563 EAL domain CH55_2677 PF01270 Glycosyl hydrolases family 8 CH55_2678 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH55_2678 PF00005 ABC transporter CH55_2679 PF00005 ABC transporter CH55_2679 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH55_268 PF01695 IstB-like ATP binding protein CH55_2680 PF00528 Binding-protein-dependent transport system inner membrane component CH55_2680 PF12911 N-terminal TM domain of oligopeptide transport permease C CH55_2681 PF00528 Binding-protein-dependent transport system inner membrane component CH55_2682 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH55_2684 PF17287 POTRA domain CH55_2684 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH55_2684 PF08479 POTRA domain, ShlB-type CH55_2685 PF05594 Haemagluttinin repeat CH55_2685 PF05860 haemagglutination activity domain CH55_2685 PF04829 Pre-toxin domain with VENN motif CH55_2685 PF13332 Hemagglutinin repeat CH55_2686 PF01797 Transposase IS200 like CH55_2688 PF07690 Major Facilitator Superfamily CH55_2689 PF05231 MASE1 CH55_2689 PF07730 Histidine kinase CH55_2689 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH55_2690 PF00196 Bacterial regulatory proteins, luxR family CH55_2690 PF00072 Response regulator receiver domain CH55_2691 PF00884 Sulfatase CH55_2691 PF08019 Phosphoethanolamine transferase EptA/EptB CH55_2692 PF12146 Serine aminopeptidase, S33 CH55_2693 PF00324 Amino acid permease CH55_2694 PF00221 Aromatic amino acid lyase CH55_2695 PF01175 Urocanase Rossmann-like domain CH55_2695 PF17391 Urocanase N-terminal domain CH55_2695 PF17392 Urocanase C-terminal domain CH55_2696 PF00291 Pyridoxal-phosphate dependent enzyme CH55_2697 PF00156 Phosphoribosyl transferase domain CH55_27 PF17848 Acetyl-coA carboxylase zinc finger domain CH55_27 PF01039 Carboxyl transferase domain CH55_270 PF00665 Integrase core domain CH55_270 PF02796 Helix-turn-helix domain of resolvase CH55_2700 PF01497 Periplasmic binding protein CH55_2701 PF01032 FecCD transport family CH55_2702 PF01032 FecCD transport family CH55_2704 PF00005 ABC transporter CH55_2707 PF13737 Transposase DDE domain CH55_2708 PF13737 Transposase DDE domain CH55_2709 PF04606 Ogr/Delta-like zinc finger CH55_271 PF00465 Iron-containing alcohol dehydrogenase CH55_271 PF00171 Aldehyde dehydrogenase family CH55_2711 PF00589 Phage integrase family CH55_2711 PF13356 Arm DNA-binding domain CH55_2711 PF14659 Phage integrase, N-terminal SAM-like domain CH55_2713 PF12833 Helix-turn-helix domain CH55_2714 PF02653 Branched-chain amino acid transport system / permease component CH55_2715 PF00005 ABC transporter CH55_2716 PF13407 Periplasmic binding protein domain CH55_2718 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH55_2718 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH55_272 PF01914 MarC family integral membrane protein CH55_2720 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH55_2720 PF02753 Pili assembly chaperone PapD, C-terminal domain CH55_2721 PF00577 Outer membrane usher protein CH55_2721 PF13954 PapC N-terminal domain CH55_2721 PF13953 PapC C-terminal domain CH55_2722 PF00577 Outer membrane usher protein CH55_2722 PF13954 PapC N-terminal domain CH55_2722 PF13953 PapC C-terminal domain CH55_2723 PF00419 Fimbrial protein CH55_2724 PF01757 Acyltransferase family CH55_2726 PF13333 Integrase core domain CH55_2726 PF00665 Integrase core domain CH55_2726 PF13276 HTH-like domain CH55_2727 PF07690 Major Facilitator Superfamily CH55_273 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH55_2732 PF13700 Domain of unknown function (DUF4158) CH55_2732 PF01526 Tn3 transposase DDE domain CH55_2733 PF03144 Elongation factor Tu domain 2 CH55_2733 PF09107 Elongation factor SelB, winged helix CH55_2733 PF09106 Elongation factor SelB, winged helix CH55_2733 PF00009 Elongation factor Tu GTP binding domain CH55_2734 PF09107 Elongation factor SelB, winged helix CH55_2734 PF03144 Elongation factor Tu domain 2 CH55_2734 PF09106 Elongation factor SelB, winged helix CH55_2734 PF00009 Elongation factor Tu GTP binding domain CH55_2735 PF03841 L-seryl-tRNA selenium transferase CH55_2735 PF12390 Selenocysteine synthase N terminal CH55_2736 PF04216 Protein involved in formate dehydrogenase formation CH55_2737 PF01292 Prokaryotic cytochrome b561 CH55_2738 PF09163 Formate dehydrogenase N, transmembrane CH55_2738 PF13247 4Fe-4S dicluster domain CH55_2739 PF01568 Molydopterin dinucleotide binding domain CH55_2739 PF00384 Molybdopterin oxidoreductase CH55_2739 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH55_274 PF00528 Binding-protein-dependent transport system inner membrane component CH55_2740 PF01568 Molydopterin dinucleotide binding domain CH55_2740 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH55_2740 PF00384 Molybdopterin oxidoreductase CH55_2741 PF02634 FdhD/NarQ family CH55_2742 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH55_2742 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH55_2743 PF02203 Tar ligand binding domain homologue CH55_2743 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH55_2743 PF00672 HAMP domain CH55_2747 PF10928 Protein of unknown function (DUF2810) CH55_2749 PF05068 Mannitol repressor CH55_275 PF12911 N-terminal TM domain of oligopeptide transport permease C CH55_275 PF00528 Binding-protein-dependent transport system inner membrane component CH55_2750 PF01232 Mannitol dehydrogenase Rossmann domain CH55_2750 PF08125 Mannitol dehydrogenase C-terminal domain CH55_2751 PF02378 Phosphotransferase system, EIIC CH55_2751 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH55_2751 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH55_2752 PF11254 Protein of unknown function (DUF3053) CH55_2753 PF05746 DALR anticodon binding domain CH55_2753 PF02092 Glycyl-tRNA synthetase beta subunit CH55_2754 PF02091 Glycyl-tRNA synthetase alpha subunit CH55_2756 PF03352 Methyladenine glycosylase CH55_2758 PF00691 OmpA family CH55_2758 PF13488 Glycine zipper CH55_276 PF00005 ABC transporter CH55_276 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH55_2760 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH55_2760 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH55_2761 PF00128 Alpha amylase, catalytic domain CH55_2763 PF00155 Aminotransferase class I and II CH55_2764 PF02080 TrkA-C domain CH55_2764 PF06826 Predicted Permease Membrane Region CH55_2765 PF00011 Hsp20/alpha crystallin family CH55_2766 PF00011 Hsp20/alpha crystallin family CH55_2767 PF07119 Protein of unknown function (DUF1375) CH55_2768 PF12566 Protein of unknown function (DUF3748) CH55_2768 PF07676 WD40-like Beta Propeller Repeat CH55_2769 PF12566 Protein of unknown function (DUF3748) CH55_2769 PF07676 WD40-like Beta Propeller Repeat CH55_277 PF00005 ABC transporter CH55_277 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH55_2770 PF00291 Pyridoxal-phosphate dependent enzyme CH55_2770 PF13291 ACT domain CH55_2771 PF02423 Ornithine cyclodeaminase/mu-crystallin family CH55_2774 PF13333 Integrase core domain CH55_2774 PF13276 HTH-like domain CH55_2774 PF00665 Integrase core domain CH55_2776 PF01751 Toprim domain CH55_2776 PF18053 DNA gyrase B subunit insert domain CH55_2776 PF00986 DNA gyrase B subunit, carboxyl terminus CH55_2776 PF00204 DNA gyrase B CH55_2776 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH55_2777 PF02463 RecF/RecN/SMC N terminal domain CH55_2778 PF00712 DNA polymerase III beta subunit, N-terminal domain CH55_2778 PF02767 DNA polymerase III beta subunit, central domain CH55_2778 PF02768 DNA polymerase III beta subunit, C-terminal domain CH55_2779 PF11638 DnaA N-terminal domain CH55_2779 PF00308 Bacterial dnaA protein CH55_2779 PF08299 Bacterial dnaA protein helix-turn-helix CH55_2781 PF00468 Ribosomal protein L34 CH55_2782 PF00825 Ribonuclease P CH55_2783 PF01809 Putative membrane protein insertion efficiency factor CH55_2784 PF02096 60Kd inner membrane protein CH55_2784 PF14849 YidC periplasmic domain CH55_2785 PF10396 GTP-binding protein TrmE N-terminus CH55_2785 PF12631 MnmE helical domain CH55_2785 PF01926 50S ribosome-binding GTPase CH55_2786 PF07055 Enoyl reductase FAD binding domain CH55_2786 PF12241 Trans-2-enoyl-CoA reductase catalytic region CH55_2786 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CH55_2789 PF00860 Permease family CH55_279 PF04269 Protein of unknown function, DUF440 CH55_2790 PF13419 Haloacid dehalogenase-like hydrolase CH55_2791 PF00528 Binding-protein-dependent transport system inner membrane component CH55_2792 PF00528 Binding-protein-dependent transport system inner membrane component CH55_2793 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH55_2795 PF01895 PhoU domain CH55_2796 PF00005 ABC transporter CH55_2797 PF00528 Binding-protein-dependent transport system inner membrane component CH55_2798 PF00528 Binding-protein-dependent transport system inner membrane component CH55_2799 PF12849 PBP superfamily domain CH55_28 PF08245 Mur ligase middle domain CH55_28 PF02875 Mur ligase family, glutamate ligase domain CH55_280 PF13396 Phospholipase_D-nuclease N-terminal CH55_280 PF13091 PLD-like domain CH55_2800 PF01380 SIS domain CH55_2801 PF00132 Bacterial transferase hexapeptide (six repeats) CH55_2801 PF12804 MobA-like NTP transferase domain CH55_2802 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CH55_2802 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CH55_2803 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH55_2803 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH55_2804 PF00231 ATP synthase CH55_2805 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH55_2805 PF00306 ATP synthase alpha/beta chain, C terminal domain CH55_2805 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH55_2806 PF00213 ATP synthase delta (OSCP) subunit CH55_2807 PF00430 ATP synthase B/B' CF(0) CH55_2808 PF00137 ATP synthase subunit C CH55_2809 PF00119 ATP synthase A chain CH55_281 PF13505 Outer membrane protein beta-barrel domain CH55_2810 PF03899 ATP synthase I chain CH55_2811 PF02527 rRNA small subunit methyltransferase G CH55_2812 PF01134 Glucose inhibited division protein A CH55_2812 PF13932 GidA associated domain CH55_2813 PF00258 Flavodoxin CH55_2814 PF01037 Lrp/AsnC ligand binding domain CH55_2815 PF03590 Aspartate-ammonia ligase CH55_2816 PF05762 VWA domain containing CoxE-like protein CH55_2817 PF12592 Protein of unknown function (DUF3763) CH55_2817 PF07728 AAA domain (dynein-related subfamily) CH55_2817 PF17868 AAA lid domain CH55_2818 PF02705 K+ potassium transporter CH55_2819 PF05025 RbsD / FucU transport protein family CH55_2820 PF00294 pfkB family carbohydrate kinase CH55_2821 PF07690 Major Facilitator Superfamily CH55_2823 PF07729 FCD domain CH55_2823 PF00392 Bacterial regulatory proteins, gntR family CH55_2832 PF04204 Homoserine O-succinyltransferase CH55_2833 PF01274 Malate synthase CH55_2834 PF00463 Isocitrate lyase family CH55_2835 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CH55_2836 PF09339 IclR helix-turn-helix domain CH55_2836 PF01614 Bacterial transcriptional regulator CH55_2837 PF09339 IclR helix-turn-helix domain CH55_2837 PF01614 Bacterial transcriptional regulator CH55_2838 PF00809 Pterin binding enzyme CH55_2838 PF02310 B12 binding domain CH55_2838 PF02607 B12 binding domain CH55_2838 PF02965 Vitamin B12 dependent methionine synthase, activation domain CH55_2838 PF02574 Homocysteine S-methyltransferase CH55_2839 PF05860 haemagglutination activity domain CH55_2839 PF13332 Hemagglutinin repeat CH55_284 PF03795 YCII-related domain CH55_2840 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH55_2840 PF17287 POTRA domain CH55_2840 PF08479 POTRA domain, ShlB-type CH55_2841 PF00696 Amino acid kinase family CH55_2841 PF01842 ACT domain CH55_2842 PF00342 Phosphoglucose isomerase CH55_2843 PF06146 Phosphate-starvation-inducible E CH55_2844 PF00528 Binding-protein-dependent transport system inner membrane component CH55_2845 PF14785 Maltose transport system permease protein MalF P2 domain CH55_2845 PF00528 Binding-protein-dependent transport system inner membrane component CH55_2846 PF01547 Bacterial extracellular solute-binding protein CH55_2848 PF00005 ABC transporter CH55_2848 PF17912 MalK OB fold domain CH55_2849 PF02264 LamB porin CH55_2850 PF07148 Maltose operon periplasmic protein precursor (MalM) CH55_2852 PF05638 Type VI secretion system effector, Hcp CH55_2857 PF02796 Helix-turn-helix domain of resolvase CH55_2857 PF00665 Integrase core domain CH55_2859 PF01695 IstB-like ATP binding protein CH55_286 PF03544 Gram-negative bacterial TonB protein C-terminal CH55_2860 PF00665 Integrase core domain CH55_2860 PF13333 Integrase core domain CH55_2860 PF13276 HTH-like domain CH55_2863 PF00455 DeoR C terminal sensor domain CH55_2863 PF08220 DeoR-like helix-turn-helix domain CH55_2864 PF01694 Rhomboid family CH55_2864 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CH55_2865 PF00581 Rhodanese-like domain CH55_2866 PF17874 MalT-like TPR region CH55_2866 PF00196 Bacterial regulatory proteins, luxR family CH55_2867 PF00343 Carbohydrate phosphorylase CH55_2868 PF00343 Carbohydrate phosphorylase CH55_2869 PF02446 4-alpha-glucanotransferase CH55_287 PF00872 Transposase, Mutator family CH55_2870 PF01521 Iron-sulphur cluster biosynthesis CH55_2870 PF01106 NifU-like domain CH55_2871 PF00156 Phosphoribosyl transferase domain CH55_2872 PF00561 alpha/beta hydrolase fold CH55_2873 PF07338 Protein of unknown function (DUF1471) CH55_2874 PF09012 FeoC like transcriptional regulator CH55_2875 PF07670 Nucleoside recognition CH55_2875 PF07664 Ferrous iron transport protein B C terminus CH55_2875 PF02421 Ferrous iron transport protein B CH55_2875 PF17910 FeoB cytosolic helical domain CH55_2876 PF04023 FeoA domain CH55_2877 PF17674 HHH domain CH55_2877 PF16921 Tex protein YqgF-like domain CH55_2877 PF00575 S1 RNA binding domain CH55_2877 PF09371 Tex-like protein N-terminal domain CH55_2878 PF03449 Transcription elongation factor, N-terminal CH55_2878 PF01272 Transcription elongation factor, GreA/GreB, C-term CH55_2879 PF00486 Transcriptional regulatory protein, C terminal CH55_2879 PF00072 Response regulator receiver domain CH55_288 PF03061 Thioesterase superfamily CH55_2880 PF00512 His Kinase A (phospho-acceptor) domain CH55_2880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH55_2880 PF00672 HAMP domain CH55_2881 PF01293 Phosphoenolpyruvate carboxykinase CH55_2882 PF01430 Hsp33 protein CH55_2883 PF01479 S4 domain CH55_2884 PF13419 Haloacid dehalogenase-like hydrolase CH55_2885 PF07095 Intracellular growth attenuator protein IgaA CH55_2887 PF00293 NUDIX domain CH55_2888 PF17092 Penicillin-binding protein OB-like domain CH55_2888 PF00912 Transglycosylase CH55_2888 PF00905 Penicillin binding protein transpeptidase domain CH55_289 PF04279 Intracellular septation protein A CH55_2893 PF03958 Bacterial type II/III secretion system short domain CH55_2893 PF00263 Bacterial type II and III secretion system protein CH55_2894 PF01202 Shikimate kinase CH55_2895 PF01761 3-dehydroquinate synthase CH55_2896 PF05036 Sporulation related domain CH55_2897 PF02086 D12 class N6 adenine-specific DNA methyltransferase CH55_2898 PF00834 Ribulose-phosphate 3 epimerase family CH55_2899 PF13419 Haloacid dehalogenase-like hydrolase CH55_29 PF05036 Sporulation related domain CH55_2900 PF00579 tRNA synthetases class I (W and Y) CH55_2901 PF10414 Sirohaem synthase dimerisation region CH55_2901 PF14824 Sirohaem biosynthesis protein central CH55_2901 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH55_2902 PF01226 Formate/nitrite transporter CH55_2903 PF13806 Rieske-like [2Fe-2S] domain CH55_2904 PF18267 Rubredoxin NAD+ reductase C-terminal domain CH55_2904 PF04324 BFD-like [2Fe-2S] binding domain CH55_2904 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH55_2904 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH55_2904 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH55_2905 PF07969 Amidohydrolase family CH55_2906 PF07690 Major Facilitator Superfamily CH55_2908 PF00356 Bacterial regulatory proteins, lacI family CH55_2909 PF11975 Family 4 glycosyl hydrolase C-terminal domain CH55_2909 PF02056 Family 4 glycosyl hydrolase CH55_2910 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH55_2911 PF05872 Bacterial protein of unknown function (DUF853) CH55_2912 PF00117 Glutamine amidotransferase class-I CH55_2913 PF00202 Aminotransferase class-III CH55_2914 PF12805 FUSC-like inner membrane protein yccS CH55_2915 PF13545 Crp-like helix-turn-helix domain CH55_2915 PF00027 Cyclic nucleotide-binding domain CH55_2916 PF02566 OsmC-like protein CH55_2918 PF00485 Phosphoribulokinase / Uridine kinase family CH55_2919 PF06794 Uncharacterised protein family (UPF0270) CH55_2920 PF00561 alpha/beta hydrolase fold CH55_2921 PF01810 LysE type translocator CH55_2922 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH55_2923 PF00005 ABC transporter CH55_2924 PF00528 Binding-protein-dependent transport system inner membrane component CH55_2925 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CH55_2927 PF00535 Glycosyl transferase family 2 CH55_2928 PF00005 ABC transporter CH55_2928 PF12848 ABC transporter CH55_2929 PF12848 ABC transporter CH55_2929 PF00005 ABC transporter CH55_293 PF03922 OmpW family CH55_2930 PF02525 Flavodoxin-like fold CH55_2931 PF00999 Sodium/hydrogen exchanger family CH55_2931 PF02254 TrkA-N domain CH55_2932 PF09526 Probable metal-binding protein (DUF2387) CH55_2933 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH55_2934 PF04102 SlyX CH55_2935 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH55_2935 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH55_2936 PF13309 HTH domain CH55_2936 PF08348 YheO-like PAS domain CH55_2937 PF02635 DsrE/DsrF-like family CH55_2938 PF02635 DsrE/DsrF-like family CH55_2939 PF04077 DsrH like protein CH55_2940 PF00164 Ribosomal protein S12/S23 CH55_2941 PF00177 Ribosomal protein S7p/S5e CH55_2942 PF00679 Elongation factor G C-terminus CH55_2942 PF14492 Elongation Factor G, domain II CH55_2942 PF03764 Elongation factor G, domain IV CH55_2942 PF00009 Elongation factor Tu GTP binding domain CH55_2942 PF03144 Elongation factor Tu domain 2 CH55_2943 PF00009 Elongation factor Tu GTP binding domain CH55_2943 PF03143 Elongation factor Tu C-terminal domain CH55_2943 PF03144 Elongation factor Tu domain 2 CH55_2944 PF01797 Transposase IS200 like CH55_2945 PF04324 BFD-like [2Fe-2S] binding domain CH55_2946 PF00210 Ferritin-like domain CH55_2947 PF00338 Ribosomal protein S10p/S20e CH55_2948 PF00297 Ribosomal protein L3 CH55_2949 PF00573 Ribosomal protein L4/L1 family CH55_295 PF00290 Tryptophan synthase alpha chain CH55_2950 PF00276 Ribosomal protein L23 CH55_2951 PF03947 Ribosomal Proteins L2, C-terminal domain CH55_2951 PF00181 Ribosomal Proteins L2, RNA binding domain CH55_2952 PF00203 Ribosomal protein S19 CH55_2953 PF00237 Ribosomal protein L22p/L17e CH55_2954 PF00189 Ribosomal protein S3, C-terminal domain CH55_2954 PF07650 KH domain CH55_2955 PF00252 Ribosomal protein L16p/L10e CH55_2956 PF00831 Ribosomal L29 protein CH55_2957 PF00366 Ribosomal protein S17 CH55_2958 PF00238 Ribosomal protein L14p/L23e CH55_2959 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CH55_2959 PF00467 KOW motif CH55_296 PF00291 Pyridoxal-phosphate dependent enzyme CH55_2960 PF00281 Ribosomal protein L5 CH55_2960 PF00673 ribosomal L5P family C-terminus CH55_2961 PF00253 Ribosomal protein S14p/S29e CH55_2962 PF00410 Ribosomal protein S8 CH55_2963 PF00347 Ribosomal protein L6 CH55_2964 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CH55_2965 PF03719 Ribosomal protein S5, C-terminal domain CH55_2965 PF00333 Ribosomal protein S5, N-terminal domain CH55_2966 PF00327 Ribosomal protein L30p/L7e CH55_2967 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CH55_2968 PF00344 SecY translocase CH55_2969 PF00444 Ribosomal protein L36 CH55_297 PF00218 Indole-3-glycerol phosphate synthase CH55_297 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CH55_2970 PF00416 Ribosomal protein S13/S18 CH55_2971 PF00411 Ribosomal protein S11 CH55_2972 PF01479 S4 domain CH55_2972 PF00163 Ribosomal protein S4/S9 N-terminal domain CH55_2973 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CH55_2973 PF01000 RNA polymerase Rpb3/RpoA insert domain CH55_2973 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CH55_2974 PF01196 Ribosomal protein L17 CH55_2975 PF13411 MerR HTH family regulatory protein CH55_2976 PF03889 Alternative ribosome-rescue factor A CH55_2977 PF01741 Large-conductance mechanosensitive channel, MscL CH55_2978 PF02080 TrkA-C domain CH55_2978 PF02254 TrkA-N domain CH55_2979 PF01189 16S rRNA methyltransferase RsmB/F CH55_2979 PF01029 NusB family CH55_298 PF02885 Glycosyl transferase family, helical bundle domain CH55_298 PF00591 Glycosyl transferase family, a/b domain CH55_2980 PF00551 Formyl transferase CH55_2980 PF02911 Formyl transferase, C-terminal domain CH55_2981 PF01327 Polypeptide deformylase CH55_2982 PF02481 DNA recombination-mediator protein A CH55_2982 PF17782 DprA winged helix domain CH55_2983 PF04361 Protein of unknown function (DUF494) CH55_2984 PF01396 Topoisomerase DNA binding C4 zinc finger CH55_2985 PF01300 Telomere recombination CH55_2986 PF08501 Shikimate dehydrogenase substrate binding domain CH55_2986 PF01488 Shikimate / quinate 5-dehydrogenase CH55_2986 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CH55_2987 PF00132 Bacterial transferase hexapeptide (six repeats) CH55_2988 PF01695 IstB-like ATP binding protein CH55_2989 PF01695 IstB-like ATP binding protein CH55_299 PF00117 Glutamine amidotransferase class-I CH55_2991 PF02796 Helix-turn-helix domain of resolvase CH55_2991 PF00665 Integrase core domain CH55_2992 PF09500 Putative thioesterase (yiiD_Cterm) CH55_2992 PF00583 Acetyltransferase (GNAT) family CH55_2993 PF05170 AsmA family CH55_2994 PF00860 Permease family CH55_2995 PF03616 Sodium/glutamate symporter CH55_2996 PF00270 DEAD/DEAH box helicase CH55_2996 PF17191 RecG wedge domain CH55_2996 PF00271 Helicase conserved C-terminal domain CH55_2997 PF00588 SpoU rRNA Methylase family CH55_2997 PF12105 SpoU, rRNA methylase, C-terminal CH55_2998 PF13291 ACT domain CH55_2998 PF04607 Region found in RelA / SpoT proteins CH55_2998 PF02824 TGS domain CH55_2999 PF01192 RNA polymerase Rpb6 CH55_3 PF04333 MlaA lipoprotein CH55_30 PF02674 Colicin V production protein CH55_300 PF00425 chorismate binding enzyme CH55_300 PF04715 Anthranilate synthase component I, N terminal region CH55_3000 PF00625 Guanylate kinase CH55_3001 PF03120 NAD-dependent DNA ligase OB-fold domain CH55_3001 PF01653 NAD-dependent DNA ligase adenylation domain CH55_3002 PF03120 NAD-dependent DNA ligase OB-fold domain CH55_3002 PF01653 NAD-dependent DNA ligase adenylation domain CH55_3003 PF03458 UPF0126 domain CH55_3004 PF08340 Domain of unknown function (DUF1732) CH55_3004 PF03755 YicC-like family, N-terminal region CH55_3005 PF03725 3' exoribonuclease family, domain 2 CH55_3005 PF01138 3' exoribonuclease family, domain 1 CH55_3006 PF00156 Phosphoribosyl transferase domain CH55_3007 PF00440 Bacterial regulatory proteins, tetR family CH55_3008 PF00692 dUTPase CH55_3009 PF04127 DNA / pantothenate metabolism flavoprotein CH55_3009 PF02441 Flavoprotein CH55_301 PF02811 PHP domain CH55_3010 PF04002 RadC-like JAB domain CH55_3011 PF00830 Ribosomal L28 family CH55_3012 PF00471 Ribosomal protein L33 CH55_3013 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CH55_3013 PF06827 Zinc finger found in FPG and IleRS CH55_3013 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CH55_3014 PF01467 Cytidylyltransferase-like CH55_3015 PF00535 Glycosyl transferase family 2 CH55_3016 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CH55_3017 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH55_3018 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH55_3019 PF01370 NAD dependent epimerase/dehydratase family CH55_302 PF01300 Telomere recombination CH55_3020 PF00155 Aminotransferase class I and II CH55_3021 PF00107 Zinc-binding dehydrogenase CH55_3021 PF08240 Alcohol dehydrogenase GroES-like domain CH55_3022 PF04748 Divergent polysaccharide deacetylase CH55_3023 PF04748 Divergent polysaccharide deacetylase CH55_3024 PF01551 Peptidase family M23 CH55_3025 PF01676 Metalloenzyme superfamily CH55_3025 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CH55_3026 PF00581 Rhodanese-like domain CH55_3027 PF00462 Glutaredoxin CH55_3028 PF02556 Preprotein translocase subunit SecB CH55_3029 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CH55_3029 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CH55_303 PF01479 S4 domain CH55_303 PF00849 RNA pseudouridylate synthase CH55_3030 PF06426 Serine acetyltransferase, N-terminal CH55_3030 PF00132 Bacterial transferase hexapeptide (six repeats) CH55_3031 PF00588 SpoU rRNA Methylase family CH55_3032 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH55_3032 PF02805 Metal binding domain of Ada CH55_3032 PF12833 Helix-turn-helix domain CH55_3032 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH55_3033 PF00512 His Kinase A (phospho-acceptor) domain CH55_3033 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH55_3033 PF00672 HAMP domain CH55_3033 PF16527 Two-component sensor protein CpxA, periplasmic domain CH55_3034 PF00072 Response regulator receiver domain CH55_3034 PF00486 Transcriptional regulatory protein, C terminal CH55_3035 PF07813 LTXXQ motif family protein CH55_3036 PF04754 Putative transposase, YhgA-like CH55_3037 PF16916 Dimerisation domain of Zinc Transporter CH55_3037 PF01545 Cation efflux family CH55_3038 PF00365 Phosphofructokinase CH55_304 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CH55_3042 PF00939 Sodium:sulfate symporter transmembrane region CH55_3043 PF03737 Aldolase/RraA CH55_3044 PF02585 GlcNAc-PI de-N-acetylase CH55_3045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_3045 PF03466 LysR substrate binding domain CH55_3046 PF00121 Triosephosphate isomerase CH55_3047 PF07305 Protein of unknown function (DUF1454) CH55_3048 PF05656 Protein of unknown function (DUF805) CH55_3049 PF00175 Oxidoreductase NAD-binding domain CH55_3049 PF00970 Oxidoreductase FAD-binding domain CH55_305 PF00106 short chain dehydrogenase CH55_3050 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CH55_3051 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH55_3051 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH55_3052 PF00230 Major intrinsic protein CH55_3053 PF06005 Cell division protein ZapB CH55_3054 PF01797 Transposase IS200 like CH55_3055 PF00664 ABC transporter transmembrane region CH55_3055 PF03412 Peptidase C39 family CH55_3055 PF00005 ABC transporter CH55_3056 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH55_3056 PF00529 HlyD membrane-fusion protein of T1SS CH55_3059 PF03737 Aldolase/RraA CH55_306 PF01343 Peptidase family S49 CH55_306 PF08496 Peptidase family S49 N-terminal CH55_3060 PF01040 UbiA prenyltransferase family CH55_3061 PF00004 ATPase family associated with various cellular activities (AAA) CH55_3061 PF07724 AAA domain (Cdc48 subfamily) CH55_3061 PF10431 C-terminal, D2-small domain, of ClpB protein CH55_3062 PF00227 Proteasome subunit CH55_3063 PF05036 Sporulation related domain CH55_3064 PF00356 Bacterial regulatory proteins, lacI family CH55_3066 PF00270 DEAD/DEAH box helicase CH55_3066 PF17764 3′ DNA-binding domain (3′BD) CH55_3066 PF18074 Primosomal protein N C-terminal domain CH55_3066 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CH55_3066 PF00271 Helicase conserved C-terminal domain CH55_3067 PF01197 Ribosomal protein L31 CH55_3068 PF05360 yiaA/B two helix domain CH55_3069 PF01340 Met Apo-repressor, MetJ CH55_307 PF10692 Protein of unknown function (DUF2498) CH55_3070 PF01053 Cys/Met metabolism PLP-dependent enzyme CH55_3071 PF01053 Cys/Met metabolism PLP-dependent enzyme CH55_3072 PF00696 Amino acid kinase family CH55_3072 PF00742 Homoserine dehydrogenase CH55_3072 PF03447 Homoserine dehydrogenase, NAD binding domain CH55_3073 PF02219 Methylenetetrahydrofolate reductase CH55_3074 PF00665 Integrase core domain CH55_3074 PF13333 Integrase core domain CH55_3074 PF13276 HTH-like domain CH55_3076 PF00311 Phosphoenolpyruvate carboxylase CH55_3077 PF01546 Peptidase family M20/M25/M40 CH55_3077 PF07687 Peptidase dimerisation domain CH55_3078 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH55_3078 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH55_3079 PF00696 Amino acid kinase family CH55_3080 PF00206 Lyase CH55_3080 PF14698 Argininosuccinate lyase C-terminal CH55_3082 PF00593 TonB dependent receptor CH55_3082 PF07715 TonB-dependent Receptor Plug Domain CH55_3085 PF00005 ABC transporter CH55_3085 PF00664 ABC transporter transmembrane region CH55_3086 PF00529 HlyD membrane-fusion protein of T1SS CH55_3087 PF03544 Gram-negative bacterial TonB protein C-terminal CH55_3088 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH55_3088 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH55_3089 PF08534 Redoxin CH55_3089 PF00462 Glutaredoxin CH55_309 PF01751 Toprim domain CH55_309 PF01131 DNA topoisomerase CH55_309 PF08272 Topoisomerase I zinc-ribbon-like CH55_309 PF01396 Topoisomerase DNA binding C4 zinc finger CH55_3090 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH55_3090 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH55_3091 PF03466 LysR substrate binding domain CH55_3091 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_3093 PF00440 Bacterial regulatory proteins, tetR family CH55_3094 PF07226 Protein of unknown function (DUF1422) CH55_3095 PF05958 tRNA (Uracil-5-)-methyltransferase CH55_3096 PF07715 TonB-dependent Receptor Plug Domain CH55_3096 PF00593 TonB dependent receptor CH55_3097 PF01177 Asp/Glu/Hydantoin racemase CH55_31 PF00156 Phosphoribosyl transferase domain CH55_310 PF03466 LysR substrate binding domain CH55_310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_3104 PF13407 Periplasmic binding protein domain CH55_3105 PF00005 ABC transporter CH55_3106 PF02653 Branched-chain amino acid transport system / permease component CH55_3107 PF03466 LysR substrate binding domain CH55_3107 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_3108 PF02653 Branched-chain amino acid transport system / permease component CH55_3109 PF04219 Protein of unknown function, DUF CH55_3110 PF13335 Magnesium chelatase, subunit ChlI C-terminal CH55_3110 PF01078 Magnesium chelatase, subunit ChlI CH55_3111 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH55_3111 PF00205 Thiamine pyrophosphate enzyme, central domain CH55_3111 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH55_3113 PF01063 Amino-transferase class IV CH55_3114 PF00920 Dehydratase family CH55_3115 PF00920 Dehydratase family CH55_3116 PF00291 Pyridoxal-phosphate dependent enzyme CH55_3116 PF00585 C-terminal regulatory domain of Threonine dehydratase CH55_312 PF00694 Aconitase C-terminal domain CH55_312 PF00330 Aconitase family (aconitate hydratase) CH55_3122 PF03466 LysR substrate binding domain CH55_3122 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_3123 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CH55_3123 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CH55_3128 PF01320 Colicin immunity protein / pyocin immunity protein CH55_3129 PF02753 Pili assembly chaperone PapD, C-terminal domain CH55_3129 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH55_313 PF00925 GTP cyclohydrolase II CH55_3131 PF13954 PapC N-terminal domain CH55_3131 PF00577 Outer membrane usher protein CH55_3131 PF13953 PapC C-terminal domain CH55_3133 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH55_3133 PF02753 Pili assembly chaperone PapD, C-terminal domain CH55_3135 PF00872 Transposase, Mutator family CH55_3138 PF13361 UvrD-like helicase C-terminal domain CH55_3138 PF00580 UvrD/REP helicase N-terminal domain CH55_3139 PF02541 Ppx/GppA phosphatase family CH55_314 PF01569 PAP2 superfamily CH55_3140 PF02541 Ppx/GppA phosphatase family CH55_3141 PF00270 DEAD/DEAH box helicase CH55_3141 PF00271 Helicase conserved C-terminal domain CH55_3142 PF00085 Thioredoxin CH55_3143 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH55_3143 PF07497 Rho termination factor, RNA-binding domain CH55_3143 PF07498 Rho termination factor, N-terminal domain CH55_3144 PF00953 Glycosyl transferase family 4 CH55_3145 PF02706 Chain length determinant protein CH55_3146 PF02350 UDP-N-acetylglucosamine 2-epimerase CH55_3147 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH55_3147 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH55_3147 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH55_3148 PF16363 GDP-mannose 4,6 dehydratase CH55_3149 PF00483 Nucleotidyl transferase CH55_315 PF06305 Lipopolysaccharide assembly protein A domain CH55_3151 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH55_3152 PF01943 Polysaccharide biosynthesis protein CH55_3153 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 CH55_3154 PF06899 WzyE protein, O-antigen assembly polymerase CH55_3155 PF03808 Glycosyl transferase WecB/TagA/CpsF family CH55_3156 PF00324 Amino acid permease CH55_316 PF18073 Rubredoxin metal binding domain CH55_3162 PF01797 Transposase IS200 like CH55_3163 PF07219 HemY protein N-terminus CH55_3163 PF07719 Tetratricopeptide repeat CH55_3164 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CH55_3165 PF02602 Uroporphyrinogen-III synthase HemD CH55_3166 PF03900 Porphobilinogen deaminase, C-terminal domain CH55_3166 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CH55_3167 PF01295 Adenylate cyclase, class-I CH55_3167 PF12633 Adenylate cyclase NT domain CH55_3168 PF01491 Frataxin-like domain CH55_3169 PF13627 Prokaryotic lipoprotein-attachment site CH55_3170 PF01678 Diaminopimelate epimerase CH55_3171 PF04340 Protein of unknown function, DUF484 CH55_3172 PF02899 Phage integrase, N-terminal SAM-like domain CH55_3172 PF00589 Phage integrase family CH55_3173 PF13419 Haloacid dehalogenase-like hydrolase CH55_3174 PF13361 UvrD-like helicase C-terminal domain CH55_3174 PF00580 UvrD/REP helicase N-terminal domain CH55_3177 PF09370 Phosphoenolpyruvate hydrolase-like CH55_3178 PF01544 CorA-like Mg2+ transporter protein CH55_3179 PF00892 EamA-like transporter family CH55_318 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CH55_3180 PF03061 Thioesterase superfamily CH55_3181 PF02253 Phospholipase A1 CH55_3182 PF16124 RecQ zinc-binding CH55_3182 PF09382 RQC domain CH55_3182 PF00570 HRDC domain CH55_3182 PF00271 Helicase conserved C-terminal domain CH55_3182 PF00270 DEAD/DEAH box helicase CH55_3183 PF01810 LysE type translocator CH55_3184 PF01810 LysE type translocator CH55_3185 PF12146 Serine aminopeptidase, S33 CH55_3188 PF03009 Glycerophosphoryl diester phosphodiesterase family CH55_3189 PF01266 FAD dependent oxidoreductase CH55_3189 PF04324 BFD-like [2Fe-2S] binding domain CH55_319 PF01253 Translation initiation factor SUI1 CH55_3190 PF00890 FAD binding domain CH55_3191 PF13183 4Fe-4S dicluster domain CH55_3191 PF02754 Cysteine-rich domain CH55_3192 PF08786 DcrB CH55_3193 PF02592 Putative vitamin uptake transporter CH55_3194 PF01206 Sulfurtransferase TusA CH55_3195 PF00403 Heavy-metal-associated domain CH55_3196 PF07947 YhhN family CH55_3199 PF06611 Protein of unknown function (DUF1145) CH55_32 PF02441 Flavoprotein CH55_320 PF05433 Glycine zipper 2TM domain CH55_3201 PF00448 SRP54-type protein, GTPase domain CH55_3201 PF00448 SRP54-type protein, GTPase domain CH55_3201 PF02881 SRP54-type protein, helical bundle domain CH55_3201 PF02881 SRP54-type protein, helical bundle domain CH55_3202 PF00005 ABC transporter CH55_3203 PF02687 FtsX-like permease family CH55_3203 PF18075 FtsX extracellular domain CH55_3204 PF00140 Sigma-70 factor, region 1.2 CH55_3204 PF04545 Sigma-70, region 4 CH55_3204 PF04542 Sigma-70 region 2 CH55_3205 PF01797 Transposase IS200 like CH55_3206 PF12568 Acetyltransferase (GNAT) domain, PanZ CH55_3207 PF13458 Periplasmic binding protein CH55_3208 PF02653 Branched-chain amino acid transport system / permease component CH55_3209 PF11862 Domain of unknown function (DUF3382) CH55_3209 PF02653 Branched-chain amino acid transport system / permease component CH55_321 PF00596 Class II Aldolase and Adducin N-terminal domain CH55_3210 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH55_3210 PF00005 ABC transporter CH55_3211 PF00005 ABC transporter CH55_3220 PF13416 Bacterial extracellular solute-binding protein CH55_3221 PF00528 Binding-protein-dependent transport system inner membrane component CH55_3222 PF00528 Binding-protein-dependent transport system inner membrane component CH55_3223 PF17912 MalK OB fold domain CH55_3223 PF00005 ABC transporter CH55_3224 PF03009 Glycerophosphoryl diester phosphodiesterase family CH55_3225 PF03547 Membrane transport protein CH55_3226 PF03466 LysR substrate binding domain CH55_3226 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_3227 PF00892 EamA-like transporter family CH55_3228 PF08267 Cobalamin-independent synthase, N-terminal domain CH55_3228 PF01717 Cobalamin-independent synthase, Catalytic domain CH55_3229 PF01738 Dienelactone hydrolase family CH55_323 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH55_3230 PF01048 Phosphorylase superfamily CH55_3232 PF13722 5TM C-terminal transporter carbon starvation CstA CH55_3232 PF02554 Carbon starvation protein CstA CH55_3233 PF09335 SNARE associated Golgi protein CH55_3234 PF02646 RmuC family CH55_3235 PF01209 ubiE/COQ5 methyltransferase family CH55_3236 PF02036 SCP-2 sterol transfer family CH55_3237 PF03109 ABC1 family CH55_3238 PF02416 mttA/Hcf106 family CH55_324 PF04328 Selenoprotein, putative CH55_3240 PF00902 Sec-independent protein translocase protein (TatC) CH55_3241 PF01026 TatD related DNase CH55_3242 PF02796 Helix-turn-helix domain of resolvase CH55_3242 PF00665 Integrase core domain CH55_3243 PF01695 IstB-like ATP binding protein CH55_3244 PF01026 TatD related DNase CH55_3245 PF00490 Delta-aminolevulinic acid dehydratase CH55_3246 PF02357 Transcription termination factor nusG CH55_3247 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CH55_3248 PF00175 Oxidoreductase NAD-binding domain CH55_3248 PF00970 Oxidoreductase FAD-binding domain CH55_3249 PF00108 Thiolase, N-terminal domain CH55_3249 PF02803 Thiolase, C-terminal domain CH55_325 PF13722 5TM C-terminal transporter carbon starvation CstA CH55_325 PF02554 Carbon starvation protein CstA CH55_3250 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH55_3250 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH55_3250 PF00378 Enoyl-CoA hydratase/isomerase CH55_3251 PF00557 Metallopeptidase family M24 CH55_3252 PF09186 Domain of unknown function (DUF1949) CH55_3252 PF01205 Uncharacterized protein family UPF0029 CH55_3253 PF01797 Transposase IS200 like CH55_3254 PF01205 Uncharacterized protein family UPF0029 CH55_3254 PF09186 Domain of unknown function (DUF1949) CH55_3255 PF02386 Cation transport protein CH55_3256 PF12724 Flavodoxin domain CH55_326 PF17876 Cold shock domain CH55_326 PF00575 S1 RNA binding domain CH55_326 PF00773 RNB domain CH55_326 PF08206 Ribonuclease B OB domain CH55_3261 PF01565 FAD binding domain CH55_3261 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CH55_3262 PF03099 Biotin/lipoate A/B protein ligase family CH55_3262 PF02237 Biotin protein ligase C terminal domain CH55_3262 PF08279 HTH domain CH55_3263 PF00485 Phosphoribulokinase / Uridine kinase family CH55_3264 PF13673 Acetyltransferase (GNAT) domain CH55_3265 PF02796 Helix-turn-helix domain of resolvase CH55_3265 PF00665 Integrase core domain CH55_3267 PF01695 IstB-like ATP binding protein CH55_327 PF07690 Major Facilitator Superfamily CH55_3272 PF00009 Elongation factor Tu GTP binding domain CH55_3272 PF03144 Elongation factor Tu domain 2 CH55_3272 PF03143 Elongation factor Tu C-terminal domain CH55_3273 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CH55_3274 PF02357 Transcription termination factor nusG CH55_3274 PF00467 KOW motif CH55_3275 PF03946 Ribosomal protein L11, N-terminal domain CH55_3275 PF00298 Ribosomal protein L11, RNA binding domain CH55_3276 PF00687 Ribosomal protein L1p/L10e family CH55_3277 PF00466 Ribosomal protein L10 CH55_3278 PF00542 Ribosomal protein L7/L12 C-terminal domain CH55_3278 PF16320 Ribosomal protein L7/L12 dimerisation domain CH55_328 PF01370 NAD dependent epimerase/dehydratase family CH55_3280 PF10385 RNA polymerase beta subunit external 1 domain CH55_3280 PF04561 RNA polymerase Rpb2, domain 2 CH55_3280 PF04560 RNA polymerase Rpb2, domain 7 CH55_3280 PF04565 RNA polymerase Rpb2, domain 3 CH55_3280 PF04563 RNA polymerase beta subunit CH55_3280 PF00562 RNA polymerase Rpb2, domain 6 CH55_3281 PF00623 RNA polymerase Rpb1, domain 2 CH55_3281 PF05000 RNA polymerase Rpb1, domain 4 CH55_3281 PF04998 RNA polymerase Rpb1, domain 5 CH55_3281 PF04997 RNA polymerase Rpb1, domain 1 CH55_3281 PF04983 RNA polymerase Rpb1, domain 3 CH55_3283 PF04055 Radical SAM superfamily CH55_3283 PF06968 Biotin and Thiamin Synthesis associated domain CH55_3284 PF05690 Thiazole biosynthesis protein ThiG CH55_3286 PF00899 ThiF family CH55_3287 PF02581 Thiamine monophosphate synthase CH55_3288 PF13667 ThiC-associated domain CH55_3288 PF01964 Radical SAM ThiC family CH55_3289 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CH55_329 PF10576 Iron-sulfur binding domain of endonuclease III CH55_329 PF00730 HhH-GPD superfamily base excision DNA repair protein CH55_329 PF00633 Helix-hairpin-helix motif CH55_3290 PF09297 NADH pyrophosphatase zinc ribbon domain CH55_3290 PF00293 NUDIX domain CH55_3292 PF01208 Uroporphyrinogen decarboxylase (URO-D) CH55_3293 PF04493 Endonuclease V CH55_3294 PF04222 Protein of unknown function (DUF416) CH55_3295 PF00216 Bacterial DNA-binding protein CH55_3296 PF07356 Protein of unknown function (DUF1481) CH55_3297 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CH55_3297 PF02844 Phosphoribosylglycinamide synthetase, N domain CH55_3297 PF02843 Phosphoribosylglycinamide synthetase, C domain CH55_3298 PF01808 AICARFT/IMPCHase bienzyme CH55_3298 PF02142 MGS-like domain CH55_33 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH55_330 PF02508 Rnf-Nqr subunit, membrane protein CH55_3304 PF01527 Transposase CH55_3305 PF13276 HTH-like domain CH55_3305 PF13683 Integrase core domain CH55_3306 PF01367 5'-3' exonuclease, C-terminal SAM fold CH55_3306 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH55_3307 PF01695 IstB-like ATP binding protein CH55_3309 PF02796 Helix-turn-helix domain of resolvase CH55_3309 PF00665 Integrase core domain CH55_331 PF04205 FMN-binding domain CH55_3310 PF00668 Condensation domain CH55_3310 PF16197 Ketoacyl-synthetase C-terminal extension CH55_3310 PF00550 Phosphopantetheine attachment site CH55_3310 PF00202 Aminotransferase class-III CH55_3310 PF02801 Beta-ketoacyl synthase, C-terminal domain CH55_3310 PF13193 AMP-binding enzyme C-terminal domain CH55_3310 PF00501 AMP-binding enzyme CH55_3310 PF00109 Beta-ketoacyl synthase, N-terminal domain CH55_3311 PF07715 TonB-dependent Receptor Plug Domain CH55_3311 PF00593 TonB dependent receptor CH55_3312 PF07687 Peptidase dimerisation domain CH55_3312 PF01546 Peptidase family M20/M25/M40 CH55_3313 PF03806 AbgT putative transporter family CH55_3314 PF14496 C-terminal novel E3 ligase, LRR-interacting CH55_3314 PF12468 Type III secretion system leucine rich repeat protein CH55_3315 PF12468 Type III secretion system leucine rich repeat protein CH55_3315 PF14496 C-terminal novel E3 ligase, LRR-interacting CH55_3315 PF14496 C-terminal novel E3 ligase, LRR-interacting CH55_3315 PF12468 Type III secretion system leucine rich repeat protein CH55_3316 PF12468 Type III secretion system leucine rich repeat protein CH55_3316 PF14496 C-terminal novel E3 ligase, LRR-interacting CH55_3317 PF03797 Autotransporter beta-domain CH55_3319 PF07906 ShET2 enterotoxin, N-terminal region CH55_332 PF03116 NQR2, RnfD, RnfE family CH55_3320 PF00873 AcrB/AcrD/AcrF family CH55_3321 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH55_3321 PF00529 HlyD membrane-fusion protein of T1SS CH55_3323 PF00990 Diguanylate cyclase, GGDEF domain CH55_3323 PF03707 Bacterial signalling protein N terminal repeat CH55_3323 PF00563 EAL domain CH55_3324 PF13188 PAS domain CH55_3324 PF03707 Bacterial signalling protein N terminal repeat CH55_3324 PF00563 EAL domain CH55_3324 PF00990 Diguanylate cyclase, GGDEF domain CH55_3325 PF13276 HTH-like domain CH55_3325 PF13333 Integrase core domain CH55_3325 PF00665 Integrase core domain CH55_3327 PF00312 Ribosomal protein S15 CH55_3328 PF16198 tRNA pseudouridylate synthase B C-terminal domain CH55_3328 PF01509 TruB family pseudouridylate synthase (N terminal domain) CH55_3328 PF09157 Pseudouridine synthase II TruB, C-terminal CH55_3329 PF02033 Ribosome-binding factor A CH55_333 PF06445 GyrI-like small molecule binding domain CH55_333 PF12833 Helix-turn-helix domain CH55_3330 PF03144 Elongation factor Tu domain 2 CH55_3330 PF11987 Translation-initiation factor 2 CH55_3330 PF04760 Translation initiation factor IF-2, N-terminal region CH55_3330 PF08364 Bacterial translation initiation factor IF-2 associated region CH55_3330 PF00009 Elongation factor Tu GTP binding domain CH55_3331 PF13184 NusA-like KH domain CH55_3331 PF08529 NusA N-terminal domain CH55_3331 PF00575 S1 RNA binding domain CH55_3332 PF17384 RimP C-terminal SH3 domain CH55_3332 PF02576 RimP N-terminal domain CH55_3335 PF03840 Preprotein translocase SecG subunit CH55_3336 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH55_3336 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH55_3336 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH55_3336 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH55_3337 PF00809 Pterin binding enzyme CH55_3338 PF00004 ATPase family associated with various cellular activities (AAA) CH55_3338 PF17862 AAA+ lid domain CH55_3338 PF01434 Peptidase family M41 CH55_3338 PF06480 FtsH Extracellular CH55_3339 PF01728 FtsJ-like methyltransferase CH55_334 PF10531 SLBB domain CH55_334 PF13237 4Fe-4S dicluster domain CH55_334 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH55_334 PF13375 RnfC Barrel sandwich hybrid domain CH55_3340 PF01985 CRS1 / YhbY (CRM) domain CH55_3341 PF01272 Transcription elongation factor, GreA/GreB, C-term CH55_3341 PF03449 Transcription elongation factor, N-terminal CH55_3342 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CH55_3343 PF00486 Transcriptional regulatory protein, C terminal CH55_3343 PF00072 Response regulator receiver domain CH55_3344 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH55_3344 PF00672 HAMP domain CH55_3344 PF00512 His Kinase A (phospho-acceptor) domain CH55_3345 PF01018 GTP1/OBG CH55_3345 PF01926 50S ribosome-binding GTPase CH55_3346 PF00892 EamA-like transporter family CH55_3347 PF01016 Ribosomal L27 protein CH55_3348 PF00829 Ribosomal prokaryotic L21 protein CH55_3349 PF00348 Polyprenyl synthetase CH55_335 PF04060 Putative Fe-S cluster CH55_3351 PF13693 Winged helix-turn-helix DNA-binding CH55_3352 PF00056 lactate/malate dehydrogenase, NAD binding domain CH55_3352 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CH55_3353 PF01316 Arginine repressor, DNA binding domain CH55_3353 PF02863 Arginine repressor, C-terminal domain CH55_3355 PF01225 Mur ligase family, catalytic domain CH55_3355 PF08245 Mur ligase middle domain CH55_3355 PF02875 Mur ligase family, glutamate ligase domain CH55_3356 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CH55_3357 PF00719 Inorganic pyrophosphatase CH55_3358 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CH55_3359 PF04357 TamB, inner membrane protein subunit of TAM complex CH55_336 PF02508 Rnf-Nqr subunit, membrane protein CH55_3360 PF04357 TamB, inner membrane protein subunit of TAM complex CH55_3361 PF17243 POTRA domain TamA domain 1 CH55_3361 PF07244 Surface antigen variable number repeat CH55_3361 PF01103 Surface antigen CH55_3362 PF01625 Peptide methionine sulfoxide reductase CH55_3363 PF00571 CBS domain CH55_3363 PF03471 Transporter associated domain CH55_3363 PF01595 Cyclin M transmembrane N-terminal domain CH55_3364 PF06526 Protein of unknown function (DUF1107) CH55_3365 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CH55_3366 PF00459 Inositol monophosphatase family CH55_3367 PF00149 Calcineurin-like phosphoesterase CH55_3367 PF02872 5'-nucleotidase, C-terminal domain CH55_3368 PF01814 Hemerythrin HHE cation binding domain CH55_3368 PF04405 Domain of Unknown function (DUF542) CH55_3369 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH55_3369 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH55_337 PF10754 Protein of unknown function (DUF2569) CH55_3370 PF04225 Opacity-associated protein A LysM-like domain CH55_3370 PF08525 Opacity-associated protein A N-terminal motif CH55_3372 PF01797 Transposase IS200 like CH55_3373 PF03948 Ribosomal protein L9, C-terminal domain CH55_3373 PF01281 Ribosomal protein L9, N-terminal domain CH55_3374 PF01084 Ribosomal protein S18 CH55_3375 PF01250 Ribosomal protein S6 CH55_3377 PF00326 Prolyl oligopeptidase family CH55_3378 PF00665 Integrase core domain CH55_3378 PF02796 Helix-turn-helix domain of resolvase CH55_3379 PF01695 IstB-like ATP binding protein CH55_338 PF00664 ABC transporter transmembrane region CH55_338 PF03412 Peptidase C39 family CH55_338 PF00005 ABC transporter CH55_3380 PF07338 Protein of unknown function (DUF1471) CH55_3381 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH55_3381 PF02770 Acyl-CoA dehydrogenase, middle domain CH55_3381 PF18158 Adaptive response protein AidB N-terminal domain CH55_3382 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH55_3382 PF00588 SpoU rRNA Methylase family CH55_3383 PF00773 RNB domain CH55_3383 PF08206 Ribonuclease B OB domain CH55_3383 PF08461 Ribonuclease R winged-helix domain CH55_3383 PF17876 Cold shock domain CH55_3383 PF00575 S1 RNA binding domain CH55_3384 PF02082 Transcriptional regulator CH55_3385 PF00709 Adenylosuccinate synthetase CH55_3386 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CH55_3387 PF01145 SPFH domain / Band 7 family CH55_3388 PF12221 Bacterial membrane protein N terminal CH55_3388 PF01145 SPFH domain / Band 7 family CH55_3389 PF01926 50S ribosome-binding GTPase CH55_3389 PF13167 GTP-binding GTPase N-terminal CH55_3389 PF16360 GTP-binding GTPase Middle Region CH55_339 PF13533 Biotin-lipoyl like CH55_3390 PF17209 Hfq protein CH55_3392 PF01119 DNA mismatch repair protein, C-terminal domain CH55_3392 PF08676 MutL C terminal dimerisation domain CH55_3393 PF01520 N-acetylmuramoyl-L-alanine amidase CH55_3394 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CH55_3395 PF03853 YjeF-related protein N-terminus CH55_3395 PF01256 Carbohydrate kinase CH55_3396 PF08331 Domain of unknown function (DUF1730) CH55_34 PF00528 Binding-protein-dependent transport system inner membrane component CH55_3400 PF00929 Exonuclease CH55_3401 PF03193 RsgA GTPase CH55_3402 PF02666 Phosphatidylserine decarboxylase CH55_3403 PF00924 Mechanosensitive ion channel CH55_3403 PF12795 Mechanosensitive ion channel porin domain CH55_3403 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH55_3404 PF00152 tRNA synthetases class II (D, K and N) CH55_3405 PF00890 FAD binding domain CH55_3405 PF02910 Fumarate reductase flavoprotein C-term CH55_3406 PF13183 4Fe-4S dicluster domain CH55_3406 PF13085 2Fe-2S iron-sulfur cluster binding domain CH55_3407 PF02300 Fumarate reductase subunit C CH55_3408 PF02313 Fumarate reductase subunit D CH55_3409 PF00893 Small Multidrug Resistance protein CH55_341 PF03412 Peptidase C39 family CH55_341 PF00005 ABC transporter CH55_341 PF00664 ABC transporter transmembrane region CH55_3410 PF09285 Elongation factor P, C-terminal CH55_3410 PF01132 Elongation factor P (EF-P) OB domain CH55_3410 PF08207 Elongation factor P (EF-P) KOW-like domain CH55_3411 PF04055 Radical SAM superfamily CH55_3412 PF13698 Domain of unknown function (DUF4156) CH55_3413 PF00118 TCP-1/cpn60 chaperonin family CH55_3414 PF00166 Chaperonin 10 Kd subunit CH55_3415 PF04186 FxsA cytoplasmic membrane protein CH55_3416 PF00206 Lyase CH55_3416 PF10415 Fumarase C C-terminus CH55_3417 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH55_3418 PF03091 CutA1 divalent ion tolerance protein CH55_3419 PF11412 Disulphide bond corrector protein DsbC CH55_3419 PF02683 Cytochrome C biogenesis protein transmembrane region CH55_3420 PF01568 Molydopterin dinucleotide binding domain CH55_3420 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH55_3420 PF00384 Molybdopterin oxidoreductase CH55_3421 PF12800 4Fe-4S binding domain CH55_3421 PF13247 4Fe-4S dicluster domain CH55_3422 PF13247 4Fe-4S dicluster domain CH55_3422 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH55_3422 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH55_3429 PF06379 L-rhamnose-proton symport protein (RhaT) CH55_343 PF02610 L-arabinose isomerase CH55_343 PF11762 L-arabinose isomerase C-terminal domain CH55_3430 PF02311 AraC-like ligand binding domain CH55_3430 PF12833 Helix-turn-helix domain CH55_3431 PF12833 Helix-turn-helix domain CH55_3431 PF02311 AraC-like ligand binding domain CH55_3434 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH55_3434 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH55_3435 PF06134 L-rhamnose isomerase (RhaA) CH55_3436 PF00596 Class II Aldolase and Adducin N-terminal domain CH55_3437 PF00465 Iron-containing alcohol dehydrogenase CH55_3438 PF05336 L-rhamnose mutarotase CH55_3439 PF00436 Single-strand binding protein family CH55_344 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH55_3440 PF17760 UvrA interaction domain CH55_3440 PF17755 UvrA DNA-binding domain CH55_3440 PF00005 ABC transporter CH55_3441 PF04237 YjbR CH55_3442 PF00155 Aminotransferase class I and II CH55_3443 PF00842 Alanine racemase, C-terminal domain CH55_3443 PF01168 Alanine racemase, N-terminal domain CH55_3444 PF00772 DnaB-like helicase N terminal domain CH55_3444 PF03796 DnaB-like helicase C terminal domain CH55_3445 PF00107 Zinc-binding dehydrogenase CH55_3445 PF08240 Alcohol dehydrogenase GroES-like domain CH55_3446 PF09583 Phage shock protein G (Phageshock_PspG) CH55_3447 PF01207 Dihydrouridine synthase (Dus) CH55_3448 PF01475 Ferric uptake regulator family CH55_3449 PF00717 Peptidase S24-like CH55_3449 PF01726 LexA DNA binding domain CH55_345 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH55_3450 PF01219 Prokaryotic diacylglycerol kinase CH55_3451 PF01553 Acyltransferase CH55_3452 PF01040 UbiA prenyltransferase family CH55_3453 PF04345 Chorismate lyase CH55_3454 PF12951 Passenger-associated-transport-repeat CH55_3455 PF08031 Berberine and berberine like CH55_3455 PF01565 FAD binding domain CH55_3458 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH55_3459 PF13953 PapC C-terminal domain CH55_3459 PF13954 PapC N-terminal domain CH55_3459 PF00577 Outer membrane usher protein CH55_346 PF00005 ABC transporter CH55_3461 PF02342 TerD domain CH55_3462 PF02342 TerD domain CH55_3463 PF03741 Integral membrane protein TerC family CH55_3464 PF05099 Tellurite resistance protein TerB CH55_3465 PF02342 TerD domain CH55_3466 PF02342 TerD domain CH55_347 PF02653 Branched-chain amino acid transport system / permease component CH55_3470 PF11202 Phosphoribosyl transferase (PRTase) CH55_3470 PF15608 PELOTA RNA binding domain CH55_3474 PF04055 Radical SAM superfamily CH55_3475 PF06228 Haem utilisation ChuX/HutX CH55_3476 PF13460 NAD(P)H-binding CH55_3477 PF07715 TonB-dependent Receptor Plug Domain CH55_3477 PF00593 TonB dependent receptor CH55_3478 PF05171 Haemin-degrading HemS.ChuX domain CH55_3479 PF01497 Periplasmic binding protein CH55_348 PF12833 Helix-turn-helix domain CH55_348 PF02311 AraC-like ligand binding domain CH55_3480 PF01032 FecCD transport family CH55_3481 PF00005 ABC transporter CH55_3482 PF01053 Cys/Met metabolism PLP-dependent enzyme CH55_3483 PF03222 Tryptophan/tyrosine permease family CH55_3484 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_3484 PF03466 LysR substrate binding domain CH55_3485 PF01206 Sulfurtransferase TusA CH55_3486 PF04143 Sulphur transport CH55_3487 PF01312 FlhB HrpN YscU SpaS Family CH55_3488 PF01311 Bacterial export proteins, family 1 CH55_3489 PF01313 Bacterial export proteins, family 3 CH55_349 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH55_349 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH55_3490 PF00813 FliP family CH55_3491 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH55_3494 PF18269 T3SS EscN ATPase C-terminal domain CH55_3494 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH55_3495 PF00771 FHIPEP family CH55_3496 PF00771 FHIPEP family CH55_3499 PF01514 Secretory protein of YscJ/FliF family CH55_35 PF00528 Binding-protein-dependent transport system inner membrane component CH55_350 PF13593 SBF-like CPA transporter family (DUF4137) CH55_3503 PF12833 Helix-turn-helix domain CH55_3503 PF14525 AraC-binding-like domain CH55_3507 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH55_3507 PF00672 HAMP domain CH55_3507 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH55_3507 PF00072 Response regulator receiver domain CH55_3507 PF01627 Hpt domain CH55_3507 PF00512 His Kinase A (phospho-acceptor) domain CH55_3508 PF00196 Bacterial regulatory proteins, luxR family CH55_3508 PF00072 Response regulator receiver domain CH55_3509 PF00375 Sodium:dicarboxylate symporter family CH55_3510 PF16177 Acetyl-coenzyme A synthetase N-terminus CH55_3510 PF00501 AMP-binding enzyme CH55_3510 PF13193 AMP-binding enzyme C-terminal domain CH55_3511 PF04341 Protein of unknown function, DUF485 CH55_3512 PF00474 Sodium:solute symporter family CH55_3514 PF00665 Integrase core domain CH55_3514 PF02796 Helix-turn-helix domain of resolvase CH55_3515 PF01695 IstB-like ATP binding protein CH55_3516 PF00550 Phosphopantetheine attachment site CH55_3516 PF00501 AMP-binding enzyme CH55_3516 PF00668 Condensation domain CH55_3516 PF08242 Methyltransferase domain CH55_3517 PF08242 Methyltransferase domain CH55_3517 PF00550 Phosphopantetheine attachment site CH55_3517 PF00501 AMP-binding enzyme CH55_3517 PF00668 Condensation domain CH55_3518 PF00550 Phosphopantetheine attachment site CH55_3518 PF00668 Condensation domain CH55_3518 PF13193 AMP-binding enzyme C-terminal domain CH55_3518 PF00501 AMP-binding enzyme CH55_3519 PF08242 Methyltransferase domain CH55_3519 PF00668 Condensation domain CH55_3519 PF00550 Phosphopantetheine attachment site CH55_3519 PF00501 AMP-binding enzyme CH55_352 PF06097 Bacterial protein of unknown function (DUF945) CH55_3520 PF08242 Methyltransferase domain CH55_3520 PF00668 Condensation domain CH55_3520 PF00550 Phosphopantetheine attachment site CH55_3520 PF00501 AMP-binding enzyme CH55_3524 PF00975 Thioesterase domain CH55_3526 PF00005 ABC transporter CH55_3526 PF00664 ABC transporter transmembrane region CH55_3526 PF08021 Siderophore-interacting FAD-binding domain CH55_3526 PF04954 Siderophore-interacting protein CH55_3527 PF00664 ABC transporter transmembrane region CH55_3527 PF00005 ABC transporter CH55_353 PF01238 Phosphomannose isomerase type I CH55_3531 PF02447 GntP family permease CH55_3533 PF12951 Passenger-associated-transport-repeat CH55_3534 PF12951 Passenger-associated-transport-repeat CH55_3535 PF04717 Type VI secretion system, phage-baseplate injector CH55_3537 PF03527 RHS protein CH55_3537 PF05593 RHS Repeat CH55_354 PF10415 Fumarase C C-terminus CH55_354 PF00206 Lyase CH55_3540 PF00939 Sodium:sulfate symporter transmembrane region CH55_3541 PF00356 Bacterial regulatory proteins, lacI family CH55_3542 PF13276 HTH-like domain CH55_3542 PF00665 Integrase core domain CH55_3542 PF13333 Integrase core domain CH55_3546 PF07715 TonB-dependent Receptor Plug Domain CH55_3546 PF00593 TonB dependent receptor CH55_3547 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CH55_3548 PF04183 IucA / IucC family CH55_3548 PF06276 Ferric iron reductase FhuF-like transporter CH55_355 PF05472 DNA replication terminus site-binding protein (Ter protein) CH55_3550 PF04183 IucA / IucC family CH55_3550 PF06276 Ferric iron reductase FhuF-like transporter CH55_3551 PF06276 Ferric iron reductase FhuF-like transporter CH55_3551 PF04183 IucA / IucC family CH55_3555 PF00765 Autoinducer synthase CH55_3556 PF03472 Autoinducer binding domain CH55_3556 PF00196 Bacterial regulatory proteins, luxR family CH55_3558 PF02517 CPBP intramembrane metalloprotease CH55_356 PF07690 Major Facilitator Superfamily CH55_3560 PF12759 InsA C-terminal domain CH55_3560 PF03811 InsA N-terminal domain CH55_3567 PF00691 OmpA family CH55_3567 PF05736 OprF membrane domain CH55_3569 PF17871 AAA lid domain CH55_3569 PF07724 AAA domain (Cdc48 subfamily) CH55_3569 PF00004 ATPase family associated with various cellular activities (AAA) CH55_3569 PF10431 C-terminal, D2-small domain, of ClpB protein CH55_357 PF03466 LysR substrate binding domain CH55_357 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_3572 PF03811 InsA N-terminal domain CH55_3572 PF12759 InsA C-terminal domain CH55_3576 PF12759 InsA C-terminal domain CH55_3576 PF03811 InsA N-terminal domain CH55_3577 PF03400 IS1 transposase CH55_3579 PF00589 Phage integrase family CH55_3579 PF02899 Phage integrase, N-terminal SAM-like domain CH55_358 PF00480 ROK family CH55_3581 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH55_3581 PF01276 Orn/Lys/Arg decarboxylase, major domain CH55_3581 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH55_3582 PF13407 Periplasmic binding protein domain CH55_3583 PF00005 ABC transporter CH55_3584 PF02653 Branched-chain amino acid transport system / permease component CH55_3585 PF07715 TonB-dependent Receptor Plug Domain CH55_3587 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CH55_3587 PF01464 Transglycosylase SLT domain CH55_3588 PF04362 Bacterial Fe(2+) trafficking CH55_3589 PF14815 NUDIX domain CH55_3589 PF10576 Iron-sulfur binding domain of endonuclease III CH55_3589 PF00633 Helix-hairpin-helix motif CH55_3589 PF00730 HhH-GPD superfamily base excision DNA repair protein CH55_3590 PF02390 Putative methyltransferase CH55_3591 PF04320 Protein with unknown function (DUF469) CH55_3592 PF04960 Glutaminase CH55_3593 PF11101 Protein of unknown function (DUF2884) CH55_3594 PF11101 Protein of unknown function (DUF2884) CH55_3595 PF16671 Actin cross-linking domain CH55_3595 PF07634 RtxA repeat CH55_3595 PF11713 Peptidase C80 family CH55_3595 PF11647 Membrane Localization Domain CH55_3595 PF12146 Serine aminopeptidase, S33 CH55_3596 PF04055 Radical SAM superfamily CH55_3596 PF06969 HemN C-terminal domain CH55_3597 PF01725 Ham1 family CH55_3598 PF02594 Uncharacterised ACR, YggU family COG1872 CH55_3599 PF02325 YGGT family CH55_36 PF00005 ABC transporter CH55_3600 PF14748 Pyrroline-5-carboxylate reductase dimerisation CH55_3600 PF03807 NADP oxidoreductase coenzyme F420-dependent CH55_3601 PF01168 Alanine racemase, N-terminal domain CH55_3602 PF00437 Type II/IV secretion system protein CH55_3603 PF04371 Porphyromonas-type peptidyl-arginine deiminase CH55_3604 PF00795 Carbon-nitrogen hydrolase CH55_3605 PF03652 Holliday junction resolvase CH55_3606 PF02622 Uncharacterized ACR, COG1678 CH55_3607 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CH55_3607 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CH55_3608 PF04452 RNA methyltransferase CH55_3609 PF04231 Endonuclease I CH55_361 PF00654 Voltage gated chloride channel CH55_3610 PF10263 SprT-like family CH55_3610 PF17283 SprT-like zinc ribbon domain CH55_3611 PF02772 S-adenosylmethionine synthetase, central domain CH55_3611 PF00438 S-adenosylmethionine synthetase, N-terminal domain CH55_3611 PF02773 S-adenosylmethionine synthetase, C-terminal domain CH55_3613 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH55_3613 PF17810 Arginine decarboxylase helical bundle domain CH55_3613 PF17944 Arginine decarboxylase C-terminal helical extension CH55_3614 PF00355 Rieske [2Fe-2S] domain CH55_3615 PF01435 Peptidase family M48 CH55_3616 PF00456 Transketolase, thiamine diphosphate binding domain CH55_3616 PF02779 Transketolase, pyrimidine binding domain CH55_3616 PF02780 Transketolase, C-terminal domain CH55_3617 PF01797 Transposase IS200 like CH55_3618 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH55_3618 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH55_3619 PF00162 Phosphoglycerate kinase CH55_362 PF00356 Bacterial regulatory proteins, lacI family CH55_3620 PF01116 Fructose-bisphosphate aldolase class-II CH55_3621 PF00924 Mechanosensitive ion channel CH55_3621 PF05552 Conserved TM helix CH55_3622 PF01810 LysE type translocator CH55_3623 PF04402 Protein of unknown function (DUF541) CH55_3624 PF03466 LysR substrate binding domain CH55_3624 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_3625 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH55_3626 PF01842 ACT domain CH55_3626 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH55_3626 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH55_3627 PF01812 5-formyltetrahydrofolate cyclo-ligase family CH55_3628 PF05164 Cell division protein ZapA CH55_3629 PF03695 Uncharacterised protein family (UPF0149) CH55_3630 PF00557 Metallopeptidase family M24 CH55_3630 PF05195 Aminopeptidase P, N-terminal domain CH55_3631 PF01494 FAD binding domain CH55_3632 PF01494 FAD binding domain CH55_3633 PF01571 Aminomethyltransferase folate-binding domain CH55_3633 PF08669 Glycine cleavage T-protein C-terminal barrel domain CH55_3634 PF01597 Glycine cleavage H-protein CH55_3635 PF02347 Glycine cleavage system P-protein CH55_3638 PF03895 YadA-like membrane anchor domain CH55_3638 PF05662 Coiled stalk of trimeric autotransporter adhesin CH55_3638 PF05658 Head domain of trimeric autotransporter adhesin CH55_3638 PF13018 Extended Signal Peptide of Type V secretion system CH55_364 PF13407 Periplasmic binding protein domain CH55_3640 PF03006 Haemolysin-III related CH55_3642 PF01571 Aminomethyltransferase folate-binding domain CH55_3643 PF03937 Flavinator of succinate dehydrogenase CH55_3644 PF00072 Response regulator receiver domain CH55_3644 PF00486 Transcriptional regulatory protein, C terminal CH55_3645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH55_3645 PF00512 His Kinase A (phospho-acceptor) domain CH55_3645 PF00672 HAMP domain CH55_3646 PF06123 Inner membrane protein CreD CH55_3647 PF00258 Flavodoxin CH55_3648 PF00589 Phage integrase family CH55_3648 PF02899 Phage integrase, N-terminal SAM-like domain CH55_3649 PF13098 Thioredoxin-like domain CH55_3649 PF10411 Disulfide bond isomerase protein N-terminus CH55_365 PF09084 NMT1/THI5 like CH55_3650 PF01368 DHH family CH55_3650 PF17768 RecJ OB domain CH55_3650 PF02272 DHHA1 domain CH55_3651 PF03462 PCRF domain CH55_3651 PF00472 RF-1 domain CH55_3652 PF00152 tRNA synthetases class II (D, K and N) CH55_3652 PF01336 OB-fold nucleic acid binding domain CH55_3654 PF13356 Arm DNA-binding domain CH55_3654 PF14659 Phage integrase, N-terminal SAM-like domain CH55_3654 PF00589 Phage integrase family CH55_3658 PF15723 Motility quorum-sensing regulator, toxin of MqsA CH55_3659 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA CH55_366 PF00528 Binding-protein-dependent transport system inner membrane component CH55_367 PF00005 ABC transporter CH55_3676 PF03551 Transcriptional regulator PadR-like family CH55_3677 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family CH55_3679 PF13407 Periplasmic binding protein domain CH55_368 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CH55_368 PF01048 Phosphorylase superfamily CH55_3680 PF02653 Branched-chain amino acid transport system / permease component CH55_3681 PF00005 ABC transporter CH55_3682 PF17912 MalK OB fold domain CH55_3682 PF00005 ABC transporter CH55_3683 PF13416 Bacterial extracellular solute-binding protein CH55_3684 PF00528 Binding-protein-dependent transport system inner membrane component CH55_3685 PF00528 Binding-protein-dependent transport system inner membrane component CH55_3686 PF07745 Glycosyl hydrolase family 53 CH55_3688 PF02449 Beta-galactosidase CH55_3688 PF08533 Beta-galactosidase C-terminal domain CH55_3688 PF08532 Beta-galactosidase trimerisation domain CH55_3689 PF02378 Phosphotransferase system, EIIC CH55_3689 PF00367 phosphotransferase system, EIIB CH55_3690 PF02264 LamB porin CH55_3691 PF00356 Bacterial regulatory proteins, lacI family CH55_3692 PF16338 Domain of unknown function (DUF4968) CH55_3692 PF17137 Domain of unknown function (DUF5110) CH55_3692 PF01055 Glycosyl hydrolases family 31 CH55_3692 PF13802 Galactose mutarotase-like CH55_3693 PF07690 Major Facilitator Superfamily CH55_3694 PF00356 Bacterial regulatory proteins, lacI family CH55_3697 PF01116 Fructose-bisphosphate aldolase class-II CH55_3699 PF00884 Sulfatase CH55_37 PF08338 Domain of unknown function (DUF1731) CH55_37 PF01370 NAD dependent epimerase/dehydratase family CH55_3700 PF04055 Radical SAM superfamily CH55_3700 PF13186 Iron-sulfur cluster-binding domain CH55_3704 PF01979 Amidohydrolase family CH55_3705 PF03610 PTS system fructose IIA component CH55_3706 PF03613 PTS system mannose/fructose/sorbose family IID component CH55_3707 PF03609 PTS system sorbose-specific iic component CH55_3708 PF03830 PTS system sorbose subfamily IIB component CH55_3709 PF01380 SIS domain CH55_3710 PF08013 Tagatose 6 phosphate kinase CH55_3711 PF00455 DeoR C terminal sensor domain CH55_3711 PF08220 DeoR-like helix-turn-helix domain CH55_3712 PF00884 Sulfatase CH55_3714 PF02796 Helix-turn-helix domain of resolvase CH55_3714 PF00665 Integrase core domain CH55_3715 PF01695 IstB-like ATP binding protein CH55_3716 PF09093 Lyase, catalytic CH55_3716 PF09092 Lyase, N terminal CH55_3716 PF02278 Polysaccharide lyase family 8, super-sandwich domain CH55_3716 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain CH55_3717 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain CH55_3717 PF09092 Lyase, N terminal CH55_3717 PF09093 Lyase, catalytic CH55_3717 PF02278 Polysaccharide lyase family 8, super-sandwich domain CH55_3721 PF00484 Carbonic anhydrase CH55_3724 PF03958 Bacterial type II/III secretion system short domain CH55_3724 PF00263 Bacterial type II and III secretion system protein CH55_3727 PF00482 Type II secretion system (T2SS), protein F CH55_3728 PF08334 Type II secretion system (T2SS), protein G CH55_3728 PF07963 Prokaryotic N-terminal methylation motif CH55_3735 PF06750 Bacterial Peptidase A24 N-terminal domain CH55_3735 PF01478 Type IV leader peptidase family CH55_374 PF00205 Thiamine pyrophosphate enzyme, central domain CH55_374 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH55_374 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH55_3740 PF02203 Tar ligand binding domain homologue CH55_3740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH55_3740 PF00672 HAMP domain CH55_3742 PF03466 LysR substrate binding domain CH55_3742 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_3743 PF03466 LysR substrate binding domain CH55_3743 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_3744 PF07690 Major Facilitator Superfamily CH55_3745 PF00356 Bacterial regulatory proteins, lacI family CH55_3746 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CH55_3746 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH55_3747 PF00384 Molybdopterin oxidoreductase CH55_3747 PF01568 Molydopterin dinucleotide binding domain CH55_3748 PF13193 AMP-binding enzyme C-terminal domain CH55_3748 PF00501 AMP-binding enzyme CH55_3748 PF01553 Acyltransferase CH55_3749 PF13193 AMP-binding enzyme C-terminal domain CH55_3749 PF00501 AMP-binding enzyme CH55_3749 PF01553 Acyltransferase CH55_375 PF01842 ACT domain CH55_3750 PF07690 Major Facilitator Superfamily CH55_3753 PF00248 Aldo/keto reductase family CH55_3754 PF02976 DNA mismatch repair enzyme MutH CH55_3755 PF00293 NUDIX domain CH55_3756 PF01590 GAF domain CH55_3756 PF05524 PEP-utilising enzyme, N-terminal CH55_3756 PF02896 PEP-utilising enzyme, TIM barrel domain CH55_3756 PF00391 PEP-utilising enzyme, mobile domain CH55_3757 PF02896 PEP-utilising enzyme, TIM barrel domain CH55_3757 PF00391 PEP-utilising enzyme, mobile domain CH55_3757 PF05524 PEP-utilising enzyme, N-terminal CH55_3757 PF01590 GAF domain CH55_3758 PF01790 Prolipoprotein diacylglyceryl transferase CH55_3759 PF00303 Thymidylate synthase CH55_376 PF13419 Haloacid dehalogenase-like hydrolase CH55_3765 PF17946 RecC C-terminal domain CH55_3766 PF00675 Insulinase (Peptidase family M16) CH55_3766 PF05193 Peptidase M16 inactive domain CH55_3766 PF16187 Middle or third domain of peptidase_M16 CH55_3767 PF12705 PD-(D/E)XK nuclease superfamily CH55_3767 PF00580 UvrD/REP helicase N-terminal domain CH55_3767 PF13361 UvrD-like helicase C-terminal domain CH55_3768 PF13538 UvrD-like helicase C-terminal domain CH55_3769 PF00696 Amino acid kinase family CH55_3769 PF00583 Acetyltransferase (GNAT) family CH55_3770 PF01520 N-acetylmuramoyl-L-alanine amidase CH55_3770 PF11741 AMIN domain CH55_3773 PF06725 3D domain CH55_3773 PF03562 MltA specific insert domain CH55_3774 PF00899 ThiF family CH55_3775 PF02657 Fe-S metabolism associated domain CH55_3776 PF00266 Aminotransferase class-V CH55_3778 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_3778 PF03466 LysR substrate binding domain CH55_3779 PF04241 Protein of unknown function (DUF423) CH55_378 PF00245 Alkaline phosphatase CH55_3780 PF01728 FtsJ-like methyltransferase CH55_3780 PF18125 RlmM ferredoxin-like domain CH55_3781 PF01367 5'-3' exonuclease, C-terminal SAM fold CH55_3781 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH55_3782 PF11892 Domain of unknown function (DUF3412) CH55_3782 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CH55_3782 PF03641 Possible lysine decarboxylase CH55_3783 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CH55_3783 PF14489 QueF-like protein CH55_3784 PF07348 Syd protein (SUKH-2) CH55_3785 PF01797 Transposase IS200 like CH55_3786 PF04287 tRNA pseudouridine synthase C CH55_3787 PF00849 RNA pseudouridylate synthase CH55_3788 PF00258 Flavodoxin CH55_3789 PF11944 Protein of unknown function (DUF3461) CH55_379 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH55_379 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH55_3790 PF01797 Transposase IS200 like CH55_3791 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CH55_3791 PF14602 Hexapeptide repeat of succinyl-transferase CH55_3791 PF00132 Bacterial transferase hexapeptide (six repeats) CH55_3792 PF01842 ACT domain CH55_3792 PF08335 GlnD PII-uridylyltransferase CH55_3792 PF01966 HD domain CH55_3792 PF01909 Nucleotidyltransferase domain CH55_3793 PF00557 Metallopeptidase family M24 CH55_3794 PF00318 Ribosomal protein S2 CH55_3795 PF00889 Elongation factor TS CH55_3796 PF00696 Amino acid kinase family CH55_3797 PF01765 Ribosome recycling factor CH55_3798 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CH55_3798 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CH55_3798 PF13288 DXP reductoisomerase C-terminal domain CH55_3799 PF01255 Putative undecaprenyl diphosphate synthase CH55_380 PF00027 Cyclic nucleotide-binding domain CH55_380 PF13545 Crp-like helix-turn-helix domain CH55_3801 PF02163 Peptidase family M50 CH55_3801 PF17820 PDZ domain CH55_3802 PF07244 Surface antigen variable number repeat CH55_3802 PF01103 Surface antigen CH55_3803 PF03938 Outer membrane protein (OmpH-like) CH55_3804 PF00132 Bacterial transferase hexapeptide (six repeats) CH55_3804 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CH55_3805 PF07977 FabA-like domain CH55_3806 PF00132 Bacterial transferase hexapeptide (six repeats) CH55_3806 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CH55_3807 PF02684 Lipid-A-disaccharide synthetase CH55_3808 PF01351 Ribonuclease HII CH55_3809 PF01336 OB-fold nucleic acid binding domain CH55_3809 PF02811 PHP domain CH55_3809 PF14579 Helix-hairpin-helix motif CH55_3809 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH55_3809 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH55_381 PF00582 Universal stress protein family CH55_3810 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CH55_3811 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH55_3812 PF09179 TilS substrate binding domain CH55_3812 PF01171 PP-loop family CH55_3812 PF11734 TilS substrate C-terminal domain CH55_3813 PF00034 Cytochrome c CH55_3814 PF07073 Modulator of Rho-dependent transcription termination (ROF) CH55_3815 PF06786 Uncharacterised protein family (UPF0253) CH55_3816 PF07152 YaeQ protein CH55_3817 PF00472 RF-1 domain CH55_3818 PF04170 NlpE N-terminal domain CH55_3818 PF17185 NlpE C-terminal OB domain CH55_3819 PF03129 Anticodon binding domain CH55_3819 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH55_3819 PF04073 Aminoacyl-tRNA editing domain CH55_382 PF02233 NAD(P) transhydrogenase beta subunit CH55_3820 PF18389 TrmO C-terminal domain CH55_3820 PF01980 tRNA-methyltransferase O CH55_3821 PF16358 RcsF lipoprotein CH55_3822 PF03180 NLPA lipoprotein CH55_3823 PF00528 Binding-protein-dependent transport system inner membrane component CH55_3824 PF09383 NIL domain CH55_3824 PF00005 ABC transporter CH55_383 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CH55_383 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CH55_383 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CH55_3831 PF00248 Aldo/keto reductase family CH55_3833 PF03372 Endonuclease/Exonuclease/phosphatase family CH55_3834 PF01464 Transglycosylase SLT domain CH55_3834 PF01476 LysM domain CH55_3835 PF16123 Hydroxyacylglutathione hydrolase C-terminus CH55_3835 PF00753 Metallo-beta-lactamase superfamily CH55_3836 PF08241 Methyltransferase domain CH55_3837 PF00075 RNase H CH55_3838 PF00929 Exonuclease CH55_384 PF07338 Protein of unknown function (DUF1471) CH55_3840 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CH55_3843 PF01695 IstB-like ATP binding protein CH55_3844 PF00665 Integrase core domain CH55_3844 PF02796 Helix-turn-helix domain of resolvase CH55_3846 PF05973 Phage derived protein Gp49-like (DUF891) CH55_385 PF13520 Amino acid permease CH55_3856 PF00589 Phage integrase family CH55_3856 PF13356 Arm DNA-binding domain CH55_3857 PF01797 Transposase IS200 like CH55_3858 PF01668 SmpB protein CH55_3859 PF03364 Polyketide cyclase / dehydrase and lipid transport CH55_3860 PF03658 RnfH family Ubiquitin CH55_3861 PF04355 SmpA / OmlA family CH55_3862 PF02463 RecF/RecN/SMC N terminal domain CH55_3863 PF01513 ATP-NAD kinase CH55_3864 PF01025 GrpE CH55_3865 PF00285 Citrate synthase, C-terminal domain CH55_3866 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH55_3867 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH55_3868 PF00890 FAD binding domain CH55_3868 PF02910 Fumarate reductase flavoprotein C-term CH55_3869 PF13085 2Fe-2S iron-sulfur cluster binding domain CH55_387 PF00072 Response regulator receiver domain CH55_387 PF00486 Transcriptional regulatory protein, C terminal CH55_3870 PF02779 Transketolase, pyrimidine binding domain CH55_3870 PF16870 2-oxoglutarate dehydrogenase C-terminal CH55_3870 PF00676 Dehydrogenase E1 component CH55_3870 PF16078 2-oxoglutarate dehydrogenase N-terminus CH55_3871 PF00364 Biotin-requiring enzyme CH55_3871 PF02817 e3 binding domain CH55_3871 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH55_3872 PF08442 ATP-grasp domain CH55_3872 PF00549 CoA-ligase CH55_3873 PF02629 CoA binding domain CH55_3873 PF00549 CoA-ligase CH55_3874 PF01654 Cytochrome bd terminal oxidase subunit I CH55_3875 PF02322 Cytochrome bd terminal oxidase subunit II CH55_3876 PF08173 Membrane bound YbgT-like protein CH55_3877 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) CH55_3878 PF03061 Thioesterase superfamily CH55_3879 PF01618 MotA/TolQ/ExbB proton channel family CH55_388 PF00672 HAMP domain CH55_388 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH55_388 PF00512 His Kinase A (phospho-acceptor) domain CH55_3880 PF02472 Biopolymer transport protein ExbD/TolR CH55_3881 PF06519 TolA C-terminal CH55_3881 PF06519 TolA C-terminal CH55_3882 PF07676 WD40-like Beta Propeller Repeat CH55_3882 PF04052 TolB amino-terminal domain CH55_3883 PF00691 OmpA family CH55_3884 PF13174 Tetratricopeptide repeat CH55_3884 PF16331 TolA binding protein trimerisation CH55_3888 PF02445 Quinolinate synthetase A protein CH55_3889 PF04973 Nicotinamide mononucleotide transporter CH55_389 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CH55_3890 PF01545 Cation efflux family CH55_3892 PF00793 DAHP synthetase I family CH55_3893 PF00300 Histidine phosphatase superfamily (branch 1) CH55_3895 PF01263 Aldose 1-epimerase CH55_3897 PF10509 Galactokinase galactose-binding signature CH55_3897 PF00288 GHMP kinases N terminal domain CH55_3897 PF08544 GHMP kinases C terminal CH55_3898 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CH55_3898 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CH55_3899 PF16363 GDP-mannose 4,6 dehydratase CH55_39 PF12850 Calcineurin-like phosphoesterase superfamily domain CH55_390 PF01797 Transposase IS200 like CH55_3902 PF00005 ABC transporter CH55_3903 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_3903 PF03459 TOBE domain CH55_3904 PF10766 Multidrug efflux pump-associated protein AcrZ CH55_3906 PF00528 Binding-protein-dependent transport system inner membrane component CH55_3907 PF03459 TOBE domain CH55_3907 PF00005 ABC transporter CH55_3909 PF10282 Lactonase, 7-bladed beta-propeller CH55_391 PF18807 Tripartite Tc toxins repeat CH55_391 PF14431 YwqJ-like deaminase CH55_3910 PF00202 Aminotransferase class-III CH55_3911 PF06968 Biotin and Thiamin Synthesis associated domain CH55_3911 PF04055 Radical SAM superfamily CH55_3912 PF00155 Aminotransferase class I and II CH55_3913 PF08241 Methyltransferase domain CH55_3916 PF12344 Ultra-violet resistance protein B CH55_3916 PF02151 UvrB/uvrC motif CH55_3916 PF17757 UvrB interaction domain CH55_3916 PF04851 Type III restriction enzyme, res subunit CH55_3916 PF00271 Helicase conserved C-terminal domain CH55_3917 PF09905 DNA-binding protein VF530 CH55_3918 PF01933 Uncharacterised protein family UPF0052 CH55_3920 PF06463 Molybdenum Cofactor Synthesis C CH55_3920 PF04055 Radical SAM superfamily CH55_3921 PF01967 MoaC family CH55_3922 PF02597 ThiS family CH55_3923 PF02391 MoaE protein CH55_3924 PF01027 Inhibitor of apoptosis-promoting Bax1 CH55_3925 PF01797 Transposase IS200 like CH55_3926 PF00732 GMC oxidoreductase CH55_3926 PF05199 GMC oxidoreductase CH55_3927 PF00171 Aldehyde dehydrogenase family CH55_3928 PF00440 Bacterial regulatory proteins, tetR family CH55_3928 PF13977 BetI-type transcriptional repressor, C-terminal CH55_3929 PF02028 BCCT, betaine/carnitine/choline family transporter CH55_393 PF01292 Prokaryotic cytochrome b561 CH55_3930 PF03466 LysR substrate binding domain CH55_3930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_3932 PF01048 Phosphorylase superfamily CH55_3933 PF03825 Nucleoside H+ symporter CH55_3934 PF01797 Transposase IS200 like CH55_3935 PF03825 Nucleoside H+ symporter CH55_3936 PF13801 Heavy-metal resistance CH55_3937 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH55_3937 PF00512 His Kinase A (phospho-acceptor) domain CH55_3938 PF02954 Bacterial regulatory protein, Fis family CH55_3938 PF00072 Response regulator receiver domain CH55_3938 PF00158 Sigma-54 interaction domain CH55_3939 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH55_3940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_3940 PF03466 LysR substrate binding domain CH55_3944 PF00005 ABC transporter CH55_3945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH55_3946 PF00440 Bacterial regulatory proteins, tetR family CH55_3946 PF09209 Tetracyclin repressor-like, C-terminal domain CH55_3947 PF00271 Helicase conserved C-terminal domain CH55_3947 PF00270 DEAD/DEAH box helicase CH55_3948 PF02371 Transposase IS116/IS110/IS902 family CH55_3948 PF01548 Transposase CH55_3949 PF13592 Winged helix-turn helix CH55_3949 PF13358 DDE superfamily endonuclease CH55_395 PF00089 Trypsin CH55_3955 PF00872 Transposase, Mutator family CH55_3956 PF00872 Transposase, Mutator family CH55_3959 PF08543 Phosphomethylpyrimidine kinase CH55_3964 PF00781 Diacylglycerol kinase catalytic domain CH55_3966 PF07411 Domain of unknown function (DUF1508) CH55_3967 PF00486 Transcriptional regulatory protein, C terminal CH55_3967 PF00072 Response regulator receiver domain CH55_3968 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH55_3968 PF00512 His Kinase A (phospho-acceptor) domain CH55_3968 PF00672 HAMP domain CH55_3969 PF07690 Major Facilitator Superfamily CH55_3970 PF00873 AcrB/AcrD/AcrF family CH55_3971 PF00873 AcrB/AcrD/AcrF family CH55_3972 PF13533 Biotin-lipoyl like CH55_3973 PF08402 TOBE domain CH55_3973 PF00005 ABC transporter CH55_3974 PF00392 Bacterial regulatory proteins, gntR family CH55_3974 PF00155 Aminotransferase class I and II CH55_3975 PF00202 Aminotransferase class-III CH55_3977 PF00528 Binding-protein-dependent transport system inner membrane component CH55_3978 PF00528 Binding-protein-dependent transport system inner membrane component CH55_3979 PF00012 Hsp70 protein CH55_398 PF00270 DEAD/DEAH box helicase CH55_398 PF11898 Domain of unknown function (DUF3418) CH55_398 PF04408 Helicase associated domain (HA2) CH55_398 PF00271 Helicase conserved C-terminal domain CH55_398 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CH55_3980 PF03448 MgtE intracellular N domain CH55_3980 PF00571 CBS domain CH55_3980 PF01769 Divalent cation transporter CH55_3981 PF03448 MgtE intracellular N domain CH55_3981 PF01769 Divalent cation transporter CH55_3981 PF00571 CBS domain CH55_3982 PF02541 Ppx/GppA phosphatase family CH55_3983 PF02503 Polyphosphate kinase middle domain CH55_3983 PF13090 Polyphosphate kinase C-terminal domain 2 CH55_3983 PF13089 Polyphosphate kinase N-terminal domain CH55_3983 PF17941 Polyphosphate kinase C-terminal domain 1 CH55_3986 PF00528 Binding-protein-dependent transport system inner membrane component CH55_3987 PF00005 ABC transporter CH55_399 PF02525 Flavodoxin-like fold CH55_3991 PF13302 Acetyltransferase (GNAT) domain CH55_3992 PF00551 Formyl transferase CH55_3993 PF02769 AIR synthase related protein, C-terminal domain CH55_3993 PF00586 AIR synthase related protein, N-terminal domain CH55_3995 PF01797 Transposase IS200 like CH55_3996 PF00308 Bacterial dnaA protein CH55_3997 PF03960 ArsC family CH55_3998 PF01435 Peptidase family M48 CH55_3998 PF07720 Tetratricopeptide repeat CH55_3999 PF01594 AI-2E family transporter CH55_4 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CH55_40 PF00293 NUDIX domain CH55_400 PF04198 Putative sugar-binding domain CH55_400 PF00325 Bacterial regulatory proteins, crp family CH55_4002 PF00578 AhpC/TSA family CH55_4003 PF01842 ACT domain CH55_4004 PF00701 Dihydrodipicolinate synthetase family CH55_4005 PF06804 NlpB/DapX lipoprotein CH55_4006 PF01797 Transposase IS200 like CH55_4008 PF01259 SAICAR synthetase CH55_4009 PF04228 Putative neutral zinc metallopeptidase CH55_401 PF08125 Mannitol dehydrogenase C-terminal domain CH55_401 PF01232 Mannitol dehydrogenase Rossmann domain CH55_4010 PF04228 Putative neutral zinc metallopeptidase CH55_4011 PF04284 Protein of unknown function (DUF441) CH55_4012 PF08351 Domain of unknown function (DUF1726) CH55_4012 PF13718 GNAT acetyltransferase 2 CH55_4012 PF05127 Helicase CH55_4012 PF17176 tRNA-binding domain CH55_4013 PF13980 Uncharacterised protein family (UPF0370) CH55_4014 PF02557 D-alanyl-D-alanine carboxypeptidase CH55_4015 PF01546 Peptidase family M20/M25/M40 CH55_4015 PF07687 Peptidase dimerisation domain CH55_4016 PF03960 ArsC family CH55_4019 PF00528 Binding-protein-dependent transport system inner membrane component CH55_402 PF07027 Protein of unknown function (DUF1318) CH55_4020 PF00005 ABC transporter CH55_4020 PF08402 TOBE domain CH55_4021 PF00884 Sulfatase CH55_4022 PF04055 Radical SAM superfamily CH55_4022 PF13186 Iron-sulfur cluster-binding domain CH55_4023 PF04307 LexA-binding, inner membrane-associated putative hydrolase CH55_4025 PF00873 AcrB/AcrD/AcrF family CH55_4026 PF00873 AcrB/AcrD/AcrF family CH55_4027 PF00873 AcrB/AcrD/AcrF family CH55_4029 PF00196 Bacterial regulatory proteins, luxR family CH55_4029 PF00072 Response regulator receiver domain CH55_403 PF13617 YnbE-like lipoprotein CH55_4030 PF13187 4Fe-4S dicluster domain CH55_4030 PF00037 4Fe-4S binding domain CH55_4030 PF12800 4Fe-4S binding domain CH55_4031 PF03927 NapD protein CH55_4032 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH55_4032 PF00384 Molybdopterin oxidoreductase CH55_4032 PF01568 Molydopterin dinucleotide binding domain CH55_4032 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH55_4033 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CH55_4034 PF03264 NapC/NirT cytochrome c family, N-terminal region CH55_4035 PF00293 NUDIX domain CH55_4036 PF00390 Malic enzyme, N-terminal domain CH55_4036 PF03949 Malic enzyme, NAD binding domain CH55_4036 PF01515 Phosphate acetyl/butaryl transferase CH55_4037 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CH55_4038 PF01218 Coproporphyrinogen III oxidase CH55_4039 PF00583 Acetyltransferase (GNAT) family CH55_404 PF11739 Dicarboxylate transport CH55_4042 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH55_4042 PF03797 Autotransporter beta-domain CH55_4042 PF13018 Extended Signal Peptide of Type V secretion system CH55_4042 PF03212 Pertactin CH55_4043 PF04076 Bacterial OB fold (BOF) protein CH55_4045 PF06572 Protein of unknown function (DUF1131) CH55_4046 PF04261 Dyp-type peroxidase family CH55_4047 PF00701 Dihydrodipicolinate synthetase family CH55_4048 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CH55_4049 PF12468 Type III secretion system leucine rich repeat protein CH55_405 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH55_405 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH55_4050 PF00480 ROK family CH55_4051 PF04074 YhcH/YjgK/YiaL CH55_4052 PF01418 Helix-turn-helix domain, rpiR family CH55_4052 PF01380 SIS domain CH55_4053 PF07690 Major Facilitator Superfamily CH55_4055 PF00528 Binding-protein-dependent transport system inner membrane component CH55_4056 PF00528 Binding-protein-dependent transport system inner membrane component CH55_4057 PF00005 ABC transporter CH55_4058 PF00291 Pyridoxal-phosphate dependent enzyme CH55_406 PF03724 META domain CH55_4060 PF00486 Transcriptional regulatory protein, C terminal CH55_4060 PF00072 Response regulator receiver domain CH55_4061 PF00512 His Kinase A (phospho-acceptor) domain CH55_4061 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH55_4061 PF00672 HAMP domain CH55_4063 PF00155 Aminotransferase class I and II CH55_4065 PF05195 Aminopeptidase P, N-terminal domain CH55_4065 PF00557 Metallopeptidase family M24 CH55_4067 PF00474 Sodium:solute symporter family CH55_4068 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH55_4068 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH55_4069 PF00005 ABC transporter CH55_4069 PF12704 MacB-like periplasmic core domain CH55_4069 PF02687 FtsX-like permease family CH55_4070 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH55_4071 PF00072 Response regulator receiver domain CH55_4071 PF00486 Transcriptional regulatory protein, C terminal CH55_4072 PF16527 Two-component sensor protein CpxA, periplasmic domain CH55_4072 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH55_4072 PF00672 HAMP domain CH55_4072 PF00512 His Kinase A (phospho-acceptor) domain CH55_4074 PF01695 IstB-like ATP binding protein CH55_4076 PF02796 Helix-turn-helix domain of resolvase CH55_4076 PF00665 Integrase core domain CH55_4077 PF01797 Transposase IS200 like CH55_4078 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH55_4079 PF05524 PEP-utilising enzyme, N-terminal CH55_4079 PF00391 PEP-utilising enzyme, mobile domain CH55_4079 PF02896 PEP-utilising enzyme, TIM barrel domain CH55_408 PF02308 MgtC family CH55_4080 PF00381 PTS HPr component phosphorylation site CH55_4081 PF00291 Pyridoxal-phosphate dependent enzyme CH55_4083 PF04354 ZipA, C-terminal FtsZ-binding domain CH55_4084 PF00533 BRCA1 C Terminus (BRCT) domain CH55_4084 PF01653 NAD-dependent DNA ligase adenylation domain CH55_4084 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CH55_4084 PF12826 Helix-hairpin-helix motif CH55_4084 PF03120 NAD-dependent DNA ligase OB-fold domain CH55_4085 PF12843 Putative quorum-sensing-regulated virulence factor CH55_409 PF00893 Small Multidrug Resistance protein CH55_4091 PF01797 Transposase IS200 like CH55_4092 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH55_4096 PF01773 Na+ dependent nucleoside transporter N-terminus CH55_4096 PF07662 Na+ dependent nucleoside transporter C-terminus CH55_4096 PF07670 Nucleoside recognition CH55_4097 PF01566 Natural resistance-associated macrophage protein CH55_4099 PF00248 Aldo/keto reductase family CH55_41 PF03611 PTS system sugar-specific permease component CH55_410 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH55_410 PF10371 Domain of unknown function CH55_410 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CH55_410 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CH55_410 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CH55_4100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_4100 PF03466 LysR substrate binding domain CH55_4102 PF02685 Glucokinase CH55_4103 PF07350 Protein of unknown function (DUF1479) CH55_4104 PF00155 Aminotransferase class I and II CH55_4105 PF01292 Prokaryotic cytochrome b561 CH55_4107 PF03783 Curli production assembly/transport component CsgG CH55_4109 PF05643 Putative bacterial lipoprotein (DUF799) CH55_411 PF01171 PP-loop family CH55_4111 PF02613 Nitrate reductase delta subunit CH55_4112 PF04976 DMSO reductase anchor subunit (DmsC) CH55_4113 PF12800 4Fe-4S binding domain CH55_4113 PF13247 4Fe-4S dicluster domain CH55_4114 PF01568 Molydopterin dinucleotide binding domain CH55_4114 PF00384 Molybdopterin oxidoreductase CH55_4114 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH55_4116 PF05638 Type VI secretion system effector, Hcp CH55_4118 PF00005 ABC transporter CH55_4119 PF00528 Binding-protein-dependent transport system inner membrane component CH55_4120 PF00528 Binding-protein-dependent transport system inner membrane component CH55_4122 PF13406 Transglycosylase SLT domain CH55_413 PF13472 GDSL-like Lipase/Acylhydrolase family CH55_413 PF07859 alpha/beta hydrolase fold CH55_4132 PF07724 AAA domain (Cdc48 subfamily) CH55_4132 PF10431 C-terminal, D2-small domain, of ClpB protein CH55_4132 PF00004 ATPase family associated with various cellular activities (AAA) CH55_4132 PF17871 AAA lid domain CH55_4133 PF16970 Type-1 fimbrial protein, A CH55_4134 PF02753 Pili assembly chaperone PapD, C-terminal domain CH55_4134 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH55_4135 PF13953 PapC C-terminal domain CH55_4135 PF13954 PapC N-terminal domain CH55_4135 PF00577 Outer membrane usher protein CH55_4136 PF00872 Transposase, Mutator family CH55_4137 PF00872 Transposase, Mutator family CH55_4138 PF00577 Outer membrane usher protein CH55_4138 PF13954 PapC N-terminal domain CH55_4138 PF13953 PapC C-terminal domain CH55_4146 PF00665 Integrase core domain CH55_4146 PF02796 Helix-turn-helix domain of resolvase CH55_4148 PF01695 IstB-like ATP binding protein CH55_415 PF01544 CorA-like Mg2+ transporter protein CH55_4151 PF04717 Type VI secretion system, phage-baseplate injector CH55_4157 PF03831 PhnA domain CH55_4157 PF08274 PhnA Zinc-Ribbon CH55_4159 PF04011 LemA family CH55_416 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH55_4162 PF00005 ABC transporter CH55_4163 PF03379 CcmB protein CH55_4164 PF01578 Cytochrome C assembly protein CH55_4165 PF04995 Heme exporter protein D (CcmD) CH55_4166 PF03100 CcmE CH55_4167 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CH55_4167 PF01578 Cytochrome C assembly protein CH55_4168 PF02811 PHP domain CH55_4168 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH55_4168 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH55_4168 PF14579 Helix-hairpin-helix motif CH55_417 PF00246 Zinc carboxypeptidase CH55_4174 PF01367 5'-3' exonuclease, C-terminal SAM fold CH55_4174 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH55_4176 PF00154 recA bacterial DNA recombination protein CH55_418 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH55_418 PF13378 Enolase C-terminal domain-like CH55_4185 PF01051 Initiator Replication protein CH55_419 PF08534 Redoxin CH55_42 PF00872 Transposase, Mutator family CH55_420 PF01797 Transposase IS200 like CH55_4201 PF17191 RecG wedge domain CH55_4201 PF00271 Helicase conserved C-terminal domain CH55_4201 PF00270 DEAD/DEAH box helicase CH55_4202 PF02195 ParB-like nuclease domain CH55_4202 PF17762 HTH domain found in ParB protein CH55_4203 PF17762 HTH domain found in ParB protein CH55_4203 PF02195 ParB-like nuclease domain CH55_4204 PF00664 ABC transporter transmembrane region CH55_4204 PF03412 Peptidase C39 family CH55_4204 PF00005 ABC transporter CH55_421 PF00158 Sigma-54 interaction domain CH55_421 PF18024 Helix-turn-helix domain CH55_4230 PF08400 Prophage tail fibre N-terminal CH55_4230 PF03335 Phage tail fibre repeat CH55_4230 PF07484 Phage Tail Collar Domain CH55_4230 PF08400 Prophage tail fibre N-terminal CH55_4230 PF03335 Phage tail fibre repeat CH55_4230 PF07484 Phage Tail Collar Domain CH55_4232 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CH55_4233 PF01695 IstB-like ATP binding protein CH55_4234 PF00665 Integrase core domain CH55_4234 PF02796 Helix-turn-helix domain of resolvase CH55_4239 PF00872 Transposase, Mutator family CH55_424 PF05128 Domain of unknown function (DUF697) CH55_4240 PF02371 Transposase IS116/IS110/IS902 family CH55_4240 PF01548 Transposase CH55_4241 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CH55_4243 PF13091 PLD-like domain CH55_4245 PF04754 Putative transposase, YhgA-like CH55_4246 PF00239 Resolvase, N terminal domain CH55_4246 PF02796 Helix-turn-helix domain of resolvase CH55_4249 PF18607 ParA helix turn helix domain CH55_4249 PF13614 AAA domain CH55_425 PF04317 YcjX-like family, DUF463 CH55_4250 PF08775 ParB family CH55_4250 PF02195 ParB-like nuclease domain CH55_4253 PF01555 DNA methylase CH55_4255 PF07128 Protein of unknown function (DUF1380) CH55_4258 PF06006 Bacterial protein of unknown function (DUF905) CH55_4259 PF02195 ParB-like nuclease domain CH55_4260 PF00665 Integrase core domain CH55_4260 PF02796 Helix-turn-helix domain of resolvase CH55_4261 PF01695 IstB-like ATP binding protein CH55_4267 PF06445 GyrI-like small molecule binding domain CH55_4267 PF12833 Helix-turn-helix domain CH55_4269 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH55_4269 PF02753 Pili assembly chaperone PapD, C-terminal domain CH55_427 PF04024 PspC domain CH55_4270 PF13953 PapC C-terminal domain CH55_4270 PF13954 PapC N-terminal domain CH55_4270 PF00577 Outer membrane usher protein CH55_4271 PF09255 Caf1 Capsule antigen CH55_4275 PF06213 Cobalamin biosynthesis protein CobT CH55_4275 PF11775 Cobalamin biosynthesis protein CobT VWA domain CH55_4277 PF14579 Helix-hairpin-helix motif CH55_4277 PF02811 PHP domain CH55_4277 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH55_4277 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH55_428 PF06667 Phage shock protein B CH55_4281 PF05932 Tir chaperone protein (CesT) family CH55_4282 PF02311 AraC-like ligand binding domain CH55_4282 PF12833 Helix-turn-helix domain CH55_4283 PF12833 Helix-turn-helix domain CH55_4283 PF02311 AraC-like ligand binding domain CH55_4285 PF01312 FlhB HrpN YscU SpaS Family CH55_4286 PF01311 Bacterial export proteins, family 1 CH55_4287 PF01313 Bacterial export proteins, family 3 CH55_4288 PF00813 FliP family CH55_4289 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH55_429 PF04012 PspA/IM30 family CH55_4290 PF02120 Flagellar hook-length control protein FliK CH55_4291 PF07321 Type III secretion protein YscO CH55_4292 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH55_4292 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH55_4292 PF18269 T3SS EscN ATPase C-terminal domain CH55_4293 PF18269 T3SS EscN ATPase C-terminal domain CH55_4293 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH55_4293 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH55_4294 PF07201 HrpJ-like domain CH55_4295 PF09059 TyeA CH55_4297 PF09474 Type III secretion system YscX (type_III_YscX) CH55_4299 PF00771 FHIPEP family CH55_430 PF02954 Bacterial regulatory protein, Fis family CH55_430 PF00158 Sigma-54 interaction domain CH55_4300 PF09621 Type III secretion system regulator (LcrR) CH55_4301 PF07216 LcrG protein CH55_4302 PF04792 V antigen (LcrV) protein CH55_4303 PF07720 Tetratricopeptide repeat CH55_4304 PF04888 Secretion system effector C (SseC) like family CH55_4305 PF05844 YopD protein CH55_4308 PF12468 Type III secretion system leucine rich repeat protein CH55_431 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH55_4312 PF05932 Tir chaperone protein (CesT) family CH55_4313 PF03543 Yersinia/Haemophilus virulence surface antigen CH55_4315 PF05818 Enterobacterial TraT complement resistance protein CH55_4317 PF13333 Integrase core domain CH55_4317 PF00665 Integrase core domain CH55_4317 PF13276 HTH-like domain CH55_432 PF00528 Binding-protein-dependent transport system inner membrane component CH55_4320 PF13614 AAA domain CH55_4321 PF18090 Centromere-binding protein HTH domain CH55_4321 PF02195 ParB-like nuclease domain CH55_4323 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH CH55_4325 PF03545 Yersinia virulence determinant (YopE) CH55_4325 PF09020 YopE, N terminal CH55_4326 PF05932 Tir chaperone protein (CesT) family CH55_4327 PF13276 HTH-like domain CH55_4327 PF13683 Integrase core domain CH55_4328 PF00665 Integrase core domain CH55_4329 PF01695 IstB-like ATP binding protein CH55_433 PF12911 N-terminal TM domain of oligopeptide transport permease C CH55_433 PF00528 Binding-protein-dependent transport system inner membrane component CH55_4331 PF13683 Integrase core domain CH55_4331 PF13276 HTH-like domain CH55_4332 PF01527 Transposase CH55_4335 PF00239 Resolvase, N terminal domain CH55_4335 PF02796 Helix-turn-helix domain of resolvase CH55_4336 PF13700 Domain of unknown function (DUF4158) CH55_4336 PF13700 Domain of unknown function (DUF4158) CH55_4336 PF01526 Tn3 transposase DDE domain CH55_4336 PF01526 Tn3 transposase DDE domain CH55_4338 PF13700 Domain of unknown function (DUF4158) CH55_4338 PF01526 Tn3 transposase DDE domain CH55_4339 PF05658 Head domain of trimeric autotransporter adhesin CH55_4339 PF03895 YadA-like membrane anchor domain CH55_4339 PF05662 Coiled stalk of trimeric autotransporter adhesin CH55_434 PF00005 ABC transporter CH55_434 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH55_4341 PF03895 YadA-like membrane anchor domain CH55_4341 PF05662 Coiled stalk of trimeric autotransporter adhesin CH55_4341 PF05658 Head domain of trimeric autotransporter adhesin CH55_4349 PF10723 Replication regulatory protein RepB CH55_435 PF00005 ABC transporter CH55_4351 PF02387 IncFII RepA protein family CH55_4357 PF09632 Rac1-binding domain CH55_4357 PF00069 Protein kinase domain CH55_4358 PF09632 Rac1-binding domain CH55_4358 PF00069 Protein kinase domain CH55_4360 PF13276 HTH-like domain CH55_4360 PF13683 Integrase core domain CH55_4361 PF09013 YopH, N-terminal CH55_4361 PF00102 Protein-tyrosine phosphatase CH55_4362 PF13276 HTH-like domain CH55_4362 PF13683 Integrase core domain CH55_4364 PF01527 Transposase CH55_4365 PF09013 YopH, N-terminal CH55_4366 PF02108 Flagellar assembly protein FliH CH55_4367 PF06578 YOP proteins translocation protein K (YscK) CH55_4368 PF01514 Secretory protein of YscJ/FliF family CH55_4369 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI CH55_4370 PF09025 YopR, type III needle-polymerisation regulator CH55_4371 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) CH55_4372 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF CH55_4373 PF08988 Type III secretion system, cytoplasmic E component of needle CH55_4374 PF16697 Inner membrane component of T3SS, cytoplasmic domain CH55_4374 PF16693 Inner membrane component of T3SS, periplasmic domain CH55_4375 PF01815 Rop protein CH55_4376 PF01695 IstB-like ATP binding protein CH55_4378 PF00665 Integrase core domain CH55_4378 PF02796 Helix-turn-helix domain of resolvase CH55_4379 PF05973 Phage derived protein Gp49-like (DUF891) CH55_438 PF00854 POT family CH55_4381 PF01278 Omptin family CH55_439 PF04893 Yip1 domain CH55_44 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH55_440 PF11656 YjbD family (DUF3811) CH55_441 PF00043 Glutathione S-transferase, C-terminal domain CH55_441 PF02798 Glutathione S-transferase, N-terminal domain CH55_442 PF08543 Phosphomethylpyrimidine kinase CH55_443 PF01479 S4 domain CH55_443 PF00579 tRNA synthetases class I (W and Y) CH55_444 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CH55_444 PF01243 Pyridoxamine 5'-phosphate oxidase CH55_445 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CH55_446 PF03702 Anhydro-N-acetylmuramic acid kinase CH55_447 PF05433 Glycine zipper 2TM domain CH55_448 PF01047 MarR family CH55_449 PF00884 Sulfatase CH55_449 PF08019 Phosphoethanolamine transferase EptA/EptB CH55_45 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH55_45 PF00356 Bacterial regulatory proteins, lacI family CH55_450 PF16925 Tetracyclin repressor-like, C-terminal domain CH55_450 PF00440 Bacterial regulatory proteins, tetR family CH55_451 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH55_452 PF14431 YwqJ-like deaminase CH55_452 PF18807 Tripartite Tc toxins repeat CH55_453 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH55_454 PF00929 Exonuclease CH55_455 PF00462 Glutaredoxin CH55_457 PF00877 NlpC/P60 family CH55_458 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH55_458 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH55_46 PF07085 DRTGG domain CH55_46 PF01515 Phosphate acetyl/butaryl transferase CH55_460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_460 PF03466 LysR substrate binding domain CH55_461 PF00356 Bacterial regulatory proteins, lacI family CH55_462 PF07690 Major Facilitator Superfamily CH55_464 PF00677 Lumazine binding domain CH55_465 PF01554 MatE CH55_468 PF02887 Pyruvate kinase, alpha/beta domain CH55_468 PF00224 Pyruvate kinase, barrel domain CH55_469 PF04728 Lipoprotein leucine-zipper CH55_47 PF00871 Acetokinase family CH55_471 PF02796 Helix-turn-helix domain of resolvase CH55_471 PF00665 Integrase core domain CH55_473 PF01695 IstB-like ATP binding protein CH55_474 PF03734 L,D-transpeptidase catalytic domain CH55_474 PF17969 L,D-transpeptidase C-terminal domain CH55_474 PF01476 LysM domain CH55_475 PF02657 Fe-S metabolism associated domain CH55_476 PF00266 Aminotransferase class-V CH55_477 PF01458 Uncharacterized protein family (UPF0051) CH55_478 PF00005 ABC transporter CH55_479 PF01458 Uncharacterized protein family (UPF0051) CH55_48 PF04217 Protein of unknown function, DUF412 CH55_480 PF01521 Iron-sulphur cluster biosynthesis CH55_481 PF03061 Thioesterase superfamily CH55_482 PF02913 FAD linked oxidases, C-terminal domain CH55_482 PF01565 FAD binding domain CH55_482 PF13183 4Fe-4S dicluster domain CH55_483 PF01594 AI-2E family transporter CH55_484 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CH55_484 PF02896 PEP-utilising enzyme, TIM barrel domain CH55_484 PF00391 PEP-utilising enzyme, mobile domain CH55_485 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CH55_485 PF02896 PEP-utilising enzyme, TIM barrel domain CH55_485 PF00391 PEP-utilising enzyme, mobile domain CH55_486 PF03618 Kinase/pyrophosphorylase CH55_487 PF00793 DAHP synthetase I family CH55_488 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CH55_489 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CH55_49 PF03887 YfbU domain CH55_490 PF03099 Biotin/lipoate A/B protein ligase family CH55_490 PF10437 Bacterial lipoate protein ligase C-terminus CH55_491 PF00877 NlpC/P60 family CH55_493 PF00892 EamA-like transporter family CH55_494 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CH55_495 PF01522 Polysaccharide deacetylase CH55_496 PF01370 NAD dependent epimerase/dehydratase family CH55_496 PF02911 Formyl transferase, C-terminal domain CH55_496 PF00551 Formyl transferase CH55_497 PF00535 Glycosyl transferase family 2 CH55_498 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH55_499 PF00005 ABC transporter CH55_5 PF04175 Protein of unknown function (DUF406) CH55_50 PF13419 Haloacid dehalogenase-like hydrolase CH55_500 PF00255 Glutathione peroxidase CH55_501 PF01032 FecCD transport family CH55_503 PF00216 Bacterial DNA-binding protein CH55_504 PF03147 Ferredoxin-fold anticodon binding domain CH55_504 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CH55_504 PF03483 B3/4 domain CH55_504 PF01588 Putative tRNA binding domain CH55_504 PF03484 tRNA synthetase B5 domain CH55_505 PF01409 tRNA synthetases class II core domain (F) CH55_505 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CH55_506 PF00453 Ribosomal protein L20 CH55_507 PF01632 Ribosomal protein L35 CH55_508 PF05198 Translation initiation factor IF-3, N-terminal domain CH55_508 PF00707 Translation initiation factor IF-3, C-terminal domain CH55_509 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH55_509 PF03129 Anticodon binding domain CH55_509 PF02824 TGS domain CH55_509 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH55_51 PF03600 Citrate transporter CH55_51 PF02080 TrkA-C domain CH55_510 PF13619 KTSC domain CH55_512 PF01914 MarC family integral membrane protein CH55_513 PF01464 Transglycosylase SLT domain CH55_514 PF01297 Zinc-uptake complex component A periplasmic CH55_515 PF00005 ABC transporter CH55_516 PF00950 ABC 3 transport family CH55_517 PF00950 ABC 3 transport family CH55_519 PF14002 YniB-like protein CH55_520 PF13419 Haloacid dehalogenase-like hydrolase CH55_521 PF00872 Transposase, Mutator family CH55_522 PF07883 Cupin domain CH55_523 PF04962 KduI/IolB family CH55_525 PF06917 Periplasmic pectate lyase CH55_526 PF00528 Binding-protein-dependent transport system inner membrane component CH55_527 PF00528 Binding-protein-dependent transport system inner membrane component CH55_528 PF03459 TOBE domain CH55_528 PF00005 ABC transporter CH55_528 PF17912 MalK OB fold domain CH55_529 PF01547 Bacterial extracellular solute-binding protein CH55_53 PF00155 Aminotransferase class I and II CH55_530 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH55_531 PF04307 LexA-binding, inner membrane-associated putative hydrolase CH55_533 PF01510 N-acetylmuramoyl-L-alanine amidase CH55_534 PF09339 IclR helix-turn-helix domain CH55_534 PF01614 Bacterial transcriptional regulator CH55_535 PF14583 Oligogalacturonate lyase CH55_536 PF07690 Major Facilitator Superfamily CH55_537 PF02753 Pili assembly chaperone PapD, C-terminal domain CH55_537 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH55_539 PF00577 Outer membrane usher protein CH55_539 PF13954 PapC N-terminal domain CH55_539 PF13953 PapC C-terminal domain CH55_54 PF03466 LysR substrate binding domain CH55_54 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_540 PF02753 Pili assembly chaperone PapD, C-terminal domain CH55_540 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH55_541 PF00419 Fimbrial protein CH55_542 PF01435 Peptidase family M48 CH55_544 PF17804 Tail specific protease N-terminal domain CH55_544 PF11818 C-terminal domain of tail specific protease (DUF3340) CH55_544 PF00595 PDZ domain CH55_544 PF03572 Peptidase family S41 CH55_545 PF04352 ProQ/FINO family CH55_545 PF17516 ProQ C-terminal domain CH55_546 PF13185 GAF domain CH55_547 PF04403 Paraquat-inducible protein A CH55_548 PF02470 MlaD protein CH55_549 PF02470 MlaD protein CH55_55 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CH55_553 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH55_553 PF02753 Pili assembly chaperone PapD, C-terminal domain CH55_556 PF07351 Protein of unknown function (DUF1480) CH55_558 PF00665 Integrase core domain CH55_558 PF02796 Helix-turn-helix domain of resolvase CH55_559 PF01695 IstB-like ATP binding protein CH55_56 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH55_560 PF00265 Thymidine kinase CH55_561 PF00816 H-NS histone family CH55_562 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH55_562 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH55_562 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH55_563 PF00072 Response regulator receiver domain CH55_564 PF02810 SEC-C motif CH55_565 PF00872 Transposase, Mutator family CH55_566 PF00551 Formyl transferase CH55_566 PF01842 ACT domain CH55_569 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_569 PF03466 LysR substrate binding domain CH55_57 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CH55_57 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CH55_570 PF03372 Endonuclease/Exonuclease/phosphatase family CH55_571 PF00293 NUDIX domain CH55_572 PF07383 Protein of unknown function (DUF1496) CH55_573 PF01751 Toprim domain CH55_573 PF01131 DNA topoisomerase CH55_574 PF00586 AIR synthase related protein, N-terminal domain CH55_574 PF02769 AIR synthase related protein, C-terminal domain CH55_575 PF00881 Nitroreductase family CH55_576 PF01343 Peptidase family S49 CH55_577 PF00710 Asparaginase, N-terminal CH55_577 PF17763 Glutaminase/Asparaginase C-terminal domain CH55_578 PF00857 Isochorismatase family CH55_579 PF07023 Protein of unknown function (DUF1315) CH55_580 PF01641 SelR domain CH55_581 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH55_581 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH55_582 PF01263 Aldose 1-epimerase CH55_583 PF06629 MltA-interacting protein MipA CH55_584 PF06798 PrkA serine protein kinase C-terminal domain CH55_584 PF08298 PrkA AAA domain CH55_585 PF04285 Protein of unknown function (DUF444) CH55_587 PF03466 LysR substrate binding domain CH55_587 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH55_588 PF02678 Pirin CH55_588 PF05726 Pirin C-terminal cupin domain CH55_589 PF07690 Major Facilitator Superfamily CH55_59 PF10531 SLBB domain CH55_59 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH55_59 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH55_590 PF01266 FAD dependent oxidoreductase CH55_591 PF04293 SpoVR like protein CH55_592 PF00392 Bacterial regulatory proteins, gntR family CH55_592 PF07840 FadR C-terminal domain CH55_593 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CH55_594 PF02600 Disulfide bond formation protein DsbB CH55_597 PF00266 Aminotransferase class-V CH55_599 PF00872 Transposase, Mutator family CH55_6 PF00108 Thiolase, N-terminal domain CH55_6 PF02803 Thiolase, C-terminal domain CH55_60 PF00384 Molybdopterin oxidoreductase CH55_60 PF01568 Molydopterin dinucleotide binding domain CH55_60 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH55_60 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH55_600 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CH55_61 PF00146 NADH dehydrogenase CH55_62 PF12838 4Fe-4S dicluster domain CH55_63 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CH55_631 PF00872 Transposase, Mutator family CH55_64 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CH55_643 PF06530 Phage antitermination protein Q CH55_645 PF05772 NinB protein CH55_648 PF01695 IstB-like ATP binding protein CH55_65 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH55_65 PF00361 Proton-conducting membrane transporter CH55_650 PF00665 Integrase core domain CH55_650 PF02796 Helix-turn-helix domain of resolvase CH55_651 PF12167 Arm DNA-binding domain CH55_651 PF00589 Phage integrase family CH55_652 PF03692 Putative zinc- or iron-chelating domain CH55_653 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH55_654 PF13406 Transglycosylase SLT domain CH55_656 PF05166 YcgL domain CH55_657 PF05209 Septum formation inhibitor MinC, N-terminal domain CH55_657 PF03775 Septum formation inhibitor MinC, C-terminal domain CH55_658 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CH55_659 PF03776 Septum formation topological specificity factor MinE CH55_66 PF00361 Proton-conducting membrane transporter CH55_660 PF01612 3'-5' exonuclease CH55_660 PF00570 HRDC domain CH55_661 PF00501 AMP-binding enzyme CH55_661 PF13193 AMP-binding enzyme C-terminal domain CH55_662 PF03843 Outer membrane lipoprotein Slp family CH55_663 PF00814 Glycoprotease family CH55_664 PF04851 Type III restriction enzyme, res subunit CH55_664 PF13307 Helicase C-terminal domain CH55_665 PF01042 Endoribonuclease L-PSP CH55_666 PF00893 Small Multidrug Resistance protein CH55_667 PF00893 Small Multidrug Resistance protein CH55_668 PF01081 KDPG and KHG aldolase CH55_67 PF00361 Proton-conducting membrane transporter CH55_670 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CH55_670 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CH55_671 PF01418 Helix-turn-helix domain, rpiR family CH55_671 PF01380 SIS domain CH55_672 PF02887 Pyruvate kinase, alpha/beta domain CH55_672 PF00224 Pyruvate kinase, barrel domain CH55_673 PF03279 Bacterial lipid A biosynthesis acyltransferase CH55_674 PF01551 Peptidase family M23 CH55_674 PF08525 Opacity-associated protein A N-terminal motif CH55_674 PF01476 LysM domain CH55_675 PF01297 Zinc-uptake complex component A periplasmic CH55_676 PF00005 ABC transporter CH55_677 PF00950 ABC 3 transport family CH55_678 PF05496 Holliday junction DNA helicase RuvB P-loop domain CH55_678 PF17864 RuvB AAA lid domain CH55_678 PF05491 RuvB C-terminal winged helix domain CH55_679 PF01330 RuvA N terminal domain CH55_679 PF07499 RuvA, C-terminal domain CH55_680 PF02075 Crossover junction endodeoxyribonuclease RuvC CH55_681 PF01709 Transcriptional regulator CH55_682 PF00293 NUDIX domain CH55_683 PF00152 tRNA synthetases class II (D, K and N) CH55_683 PF02938 GAD domain CH55_683 PF01336 OB-fold nucleic acid binding domain CH55_684 PF01904 Protein of unknown function DUF72 CH55_685 PF01124 MAPEG family CH55_686 PF13649 Methyltransferase domain CH55_687 PF08003 Protein of unknown function (DUF1698) CH55_688 PF03932 CutC family CH55_689 PF06185 YecM protein CH55_69 PF04074 YhcH/YjgK/YiaL CH55_690 PF03485 Arginyl tRNA synthetase N terminal domain CH55_690 PF05746 DALR anticodon binding domain CH55_690 PF00750 tRNA synthetases class I (R) CH55_691 PF13332 Hemagglutinin repeat CH55_691 PF05860 haemagglutination activity domain CH55_692 PF13332 Hemagglutinin repeat CH55_692 PF05860 haemagglutination activity domain CH55_693 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH55_693 PF17287 POTRA domain CH55_693 PF08479 POTRA domain, ShlB-type CH55_694 PF03023 Lipid II flippase MurJ CH55_695 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH55_696 PF04337 Protein of unknown function, DUF480 CH55_697 PF13302 Acetyltransferase (GNAT) domain CH55_698 PF07690 Major Facilitator Superfamily CH55_699 PF07273 Protein of unknown function (DUF1439) CH55_7 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH55_7 PF00378 Enoyl-CoA hydratase/isomerase CH55_7 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH55_70 PF01202 Shikimate kinase CH55_700 PF02613 Nitrate reductase delta subunit CH55_701 PF02811 PHP domain CH55_703 PF01325 Iron dependent repressor, N-terminal DNA binding domain CH55_703 PF00480 ROK family CH55_704 PF03009 Glycerophosphoryl diester phosphodiesterase family CH55_705 PF00005 ABC transporter CH55_705 PF08402 TOBE domain CH55_706 PF00528 Binding-protein-dependent transport system inner membrane component CH55_707 PF00528 Binding-protein-dependent transport system inner membrane component CH55_709 PF03009 Glycerophosphoryl diester phosphodiesterase family CH55_71 PF00106 short chain dehydrogenase CH55_712 PF00916 Sulfate permease family CH55_712 PF01740 STAS domain CH55_713 PF00793 DAHP synthetase I family CH55_714 PF13369 Transglutaminase-like superfamily CH55_715 PF04247 Invasion gene expression up-regulator, SirB CH55_716 PF13847 Methyltransferase domain CH55_716 PF17827 PrmC N-terminal domain CH55_717 PF03462 PCRF domain CH55_717 PF00472 RF-1 domain CH55_718 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CH55_718 PF01488 Shikimate / quinate 5-dehydrogenase CH55_718 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CH55_719 PF03550 Outer membrane lipoprotein LolB CH55_720 PF00288 GHMP kinases N terminal domain CH55_720 PF08544 GHMP kinases C terminal CH55_721 PF14572 Phosphoribosyl synthetase-associated domain CH55_721 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CH55_722 PF10762 Protein of unknown function (DUF2583) CH55_723 PF01195 Peptidyl-tRNA hydrolase CH55_724 PF06071 Protein of unknown function (DUF933) CH55_724 PF01926 50S ribosome-binding GTPase CH55_73 PF00356 Bacterial regulatory proteins, lacI family CH55_733 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CH55_734 PF00486 Transcriptional regulatory protein, C terminal CH55_734 PF00072 Response regulator receiver domain CH55_735 PF00512 His Kinase A (phospho-acceptor) domain CH55_735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH55_735 PF00672 HAMP domain CH55_74 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH55_74 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH55_744 PF08242 Methyltransferase domain CH55_749 PF00872 Transposase, Mutator family CH55_75 PF07690 Major Facilitator Superfamily CH55_750 PF00872 Transposase, Mutator family CH55_76 PF03928 Haem-degrading CH55_760 PF01370 NAD dependent epimerase/dehydratase family CH55_761 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH55_761 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH55_762 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH55_762 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH55_764 PF05962 HutD CH55_765 PF01979 Amidohydrolase family CH55_766 PF00392 Bacterial regulatory proteins, gntR family CH55_766 PF07702 UTRA domain CH55_767 PF01979 Amidohydrolase family CH55_77 PF00920 Dehydratase family CH55_770 PF01695 IstB-like ATP binding protein CH55_771 PF02796 Helix-turn-helix domain of resolvase CH55_771 PF00665 Integrase core domain CH55_774 PF08402 TOBE domain CH55_774 PF00005 ABC transporter CH55_775 PF00528 Binding-protein-dependent transport system inner membrane component CH55_776 PF00528 Binding-protein-dependent transport system inner membrane component CH55_778 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH55_778 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH55_785 PF00872 Transposase, Mutator family CH55_786 PF00872 Transposase, Mutator family CH55_79 PF05957 Bacterial protein of unknown function (DUF883) CH55_798 PF05638 Type VI secretion system effector, Hcp CH55_8 PF00300 Histidine phosphatase superfamily (branch 1) CH55_808 PF01066 CDP-alcohol phosphatidyltransferase CH55_809 PF08459 UvrC Helix-hairpin-helix N-terminal CH55_809 PF02151 UvrB/uvrC motif CH55_809 PF01541 GIY-YIG catalytic domain CH55_81 PF00425 chorismate binding enzyme CH55_810 PF00072 Response regulator receiver domain CH55_810 PF00196 Bacterial regulatory proteins, luxR family CH55_811 PF10769 Protein of unknown function (DUF2594) CH55_812 PF06942 GlpM protein CH55_814 PF13505 Outer membrane protein beta-barrel domain CH55_816 PF00324 Amino acid permease CH55_817 PF01344 Kelch motif CH55_818 PF03358 NADPH-dependent FMN reductase CH55_819 PF04261 Dyp-type peroxidase family CH55_82 PF16582 Middle domain of thiamine pyrophosphate CH55_82 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH55_82 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH55_820 PF09375 Imelysin CH55_820 PF13473 Cupredoxin-like domain CH55_821 PF03239 Iron permease FTR1 family CH55_822 PF00474 Sodium:solute symporter family CH55_824 PF00171 Aldehyde dehydrogenase family CH55_824 PF01619 Proline dehydrogenase CH55_824 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CH55_824 PF14850 DNA-binding domain of Proline dehydrogenase CH55_83 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH55_83 PF16582 Middle domain of thiamine pyrophosphate CH55_83 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH55_830 PF00291 Pyridoxal-phosphate dependent enzyme CH55_831 PF02899 Phage integrase, N-terminal SAM-like domain CH55_832 PF04542 Sigma-70 region 2 CH55_832 PF04539 Sigma-70 region 3 CH55_832 PF04545 Sigma-70, region 4 CH55_833 PF08884 Flagellin D3 domain CH55_833 PF00669 Bacterial flagellin N-terminal helical region CH55_833 PF00700 Bacterial flagellin C-terminal helical region CH55_834 PF02465 Flagellar hook-associated protein 2 N-terminus CH55_834 PF07196 Flagellin hook IN motif CH55_834 PF07195 Flagellar hook-associated protein 2 C-terminus CH55_835 PF02561 Flagellar protein FliS CH55_836 PF05400 Flagellar protein FliT CH55_837 PF12833 Helix-turn-helix domain CH55_838 PF02743 Cache domain CH55_838 PF00672 HAMP domain CH55_838 PF00211 Adenylate and Guanylate cyclase catalytic domain CH55_84 PF12697 Alpha/beta hydrolase family CH55_840 PF01966 HD domain CH55_841 PF00730 HhH-GPD superfamily base excision DNA repair protein CH55_844 PF02049 Flagellar hook-basal body complex protein FliE CH55_845 PF01514 Secretory protein of YscJ/FliF family CH55_845 PF08345 Flagellar M-ring protein C-terminal CH55_846 PF14842 FliG N-terminal domain CH55_846 PF01706 FliG C-terminal domain CH55_846 PF14841 FliG middle domain CH55_847 PF02108 Flagellar assembly protein FliH CH55_848 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH55_848 PF18269 T3SS EscN ATPase C-terminal domain CH55_849 PF02050 Flagellar FliJ protein CH55_85 PF00378 Enoyl-CoA hydratase/isomerase CH55_850 PF02120 Flagellar hook-length control protein FliK CH55_851 PF03748 Flagellar basal body-associated protein FliL CH55_852 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH55_852 PF02154 Flagellar motor switch protein FliM CH55_853 PF16973 Flagellar motor switch protein FliN N-terminal CH55_853 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH55_854 PF04347 Flagellar biosynthesis protein, FliO CH55_855 PF00813 FliP family CH55_856 PF01313 Bacterial export proteins, family 3 CH55_857 PF01311 Bacterial export proteins, family 1 CH55_86 PF13378 Enolase C-terminal domain-like CH55_860 PF00294 pfkB family carbohydrate kinase CH55_861 PF02653 Branched-chain amino acid transport system / permease component CH55_862 PF02653 Branched-chain amino acid transport system / permease component CH55_863 PF00005 ABC transporter CH55_864 PF13407 Periplasmic binding protein domain CH55_865 PF02653 Branched-chain amino acid transport system / permease component CH55_866 PF00596 Class II Aldolase and Adducin N-terminal domain CH55_867 PF04198 Putative sugar-binding domain CH55_868 PF00669 Bacterial flagellin N-terminal helical region CH55_869 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH55_869 PF00460 Flagella basal body rod protein CH55_87 PF13193 AMP-binding enzyme C-terminal domain CH55_87 PF00501 AMP-binding enzyme CH55_870 PF10135 Rod binding protein CH55_870 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CH55_871 PF02119 Flagellar P-ring protein CH55_872 PF02107 Flagellar L-ring protein CH55_873 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH55_873 PF00460 Flagella basal body rod protein CH55_874 PF00460 Flagella basal body rod protein CH55_874 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH55_875 PF07559 Flagellar basal body protein FlaE CH55_875 PF00460 Flagella basal body rod protein CH55_875 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH55_876 PF03963 Flagellar hook capping protein - N-terminal region CH55_876 PF13860 FlgD Ig-like domain CH55_876 PF13861 FlgD Tudor-like domain CH55_877 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH55_877 PF00460 Flagella basal body rod protein CH55_878 PF00460 Flagella basal body rod protein CH55_879 PF17656 FlgA N-terminal domain CH55_879 PF13144 Chaperone for flagella basal body P-ring formation CH55_88 PF02885 Glycosyl transferase family, helical bundle domain CH55_880 PF04316 Anti-sigma-28 factor, FlgM CH55_881 PF05130 FlgN protein CH55_882 PF09134 Invasin, domain 3 CH55_882 PF07979 Intimin C-type lectin domain CH55_882 PF11924 Inverse autotransporter, beta-domain CH55_882 PF02369 Bacterial Ig-like domain (group 1) CH55_883 PF01797 Transposase IS200 like CH55_884 PF07979 Intimin C-type lectin domain CH55_884 PF11924 Inverse autotransporter, beta-domain CH55_884 PF09134 Invasin, domain 3 CH55_884 PF02369 Bacterial Ig-like domain (group 1) CH55_885 PF06366 Flagellar protein FlhE CH55_886 PF00771 FHIPEP family CH55_887 PF01312 FlhB HrpN YscU SpaS Family CH55_89 PF07338 Protein of unknown function (DUF1471) CH55_890 PF10709 Protein of unknown function (DUF2511) CH55_892 PF04234 CopC domain CH55_893 PF00210 Ferritin-like domain CH55_894 PF06440 DNA polymerase III, theta subunit CH55_895 PF00561 alpha/beta hydrolase fold CH55_896 PF00561 alpha/beta hydrolase fold CH55_897 PF00326 Prolyl oligopeptidase family CH55_897 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CH55_898 PF13995 YebF-like protein CH55_9 PF01713 Smr domain CH55_90 PF05971 RNA methyltransferase CH55_900 PF07130 YebG protein CH55_901 PF03880 DbpA RNA binding domain CH55_901 PF00271 Helicase conserved C-terminal domain CH55_901 PF00270 DEAD/DEAH box helicase CH55_902 PF02222 ATP-grasp domain CH55_903 PF03701 Uncharacterised protein family (UPF0181) CH55_904 PF04715 Anthranilate synthase component I, N terminal region CH55_904 PF00425 chorismate binding enzyme CH55_905 PF00293 NUDIX domain CH55_906 PF03315 Serine dehydratase beta chain CH55_906 PF03313 Serine dehydratase alpha chain CH55_907 PF01613 Flavin reductase like domain CH55_908 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal CH55_908 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal CH55_909 PF07690 Major Facilitator Superfamily CH55_91 PF01695 IstB-like ATP binding protein CH55_910 PF07690 Major Facilitator Superfamily CH55_911 PF03328 HpcH/HpaI aldolase/citrate lyase family CH55_912 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH55_913 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase CH55_914 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH55_915 PF00171 Aldehyde dehydrogenase family CH55_916 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH55_917 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH55_918 PF01047 MarR family CH55_919 PF03741 Integral membrane protein TerC family CH55_919 PF03471 Transporter associated domain CH55_920 PF03610 PTS system fructose IIA component CH55_920 PF03830 PTS system sorbose subfamily IIB component CH55_921 PF03609 PTS system sorbose-specific iic component CH55_922 PF03613 PTS system mannose/fructose/sorbose family IID component CH55_923 PF06173 Protein of unknown function (DUF986) CH55_924 PF02659 Putative manganese efflux pump CH55_925 PF00593 TonB dependent receptor CH55_925 PF07715 TonB-dependent Receptor Plug Domain CH55_927 PF00990 Diguanylate cyclase, GGDEF domain CH55_927 PF08448 PAS fold CH55_927 PF08447 PAS fold CH55_927 PF05231 MASE1 CH55_927 PF00563 EAL domain CH55_927 PF13426 PAS domain CH55_929 PF13847 Methyltransferase domain CH55_93 PF00665 Integrase core domain CH55_93 PF02796 Helix-turn-helix domain of resolvase CH55_931 PF00313 'Cold-shock' DNA-binding domain CH55_933 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP CH55_934 PF00324 Amino acid permease CH55_937 PF13974 YebO-like protein CH55_938 PF13996 YobH-like protein CH55_939 PF10964 Protein of unknown function (DUF2766) CH55_94 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH55_94 PF08447 PAS fold CH55_94 PF13426 PAS domain CH55_941 PF12833 Helix-turn-helix domain CH55_943 PF00005 ABC transporter CH55_943 PF00664 ABC transporter transmembrane region CH55_946 PF06167 Glucose-regulated metallo-peptidase M90 CH55_948 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH55_948 PF00356 Bacterial regulatory proteins, lacI family CH55_949 PF01695 IstB-like ATP binding protein CH55_950 PF02796 Helix-turn-helix domain of resolvase CH55_950 PF00665 Integrase core domain CH55_951 PF00356 Bacterial regulatory proteins, lacI family CH55_951 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH55_952 PF00872 Transposase, Mutator family CH55_953 PF01306 LacY proton/sugar symporter CH55_954 PF16875 Glycosyl hydrolase family 36 N-terminal domain CH55_954 PF16874 Glycosyl hydrolase family 36 C-terminal domain CH55_957 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CH55_957 PF01648 4'-phosphopantetheinyl transferase superfamily CH55_958 PF03480 Bacterial extracellular solute-binding protein, family 7 CH55_96 PF00005 ABC transporter CH55_960 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH55_961 PF00196 Bacterial regulatory proteins, luxR family CH55_961 PF00072 Response regulator receiver domain CH55_963 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CH55_965 PF01522 Polysaccharide deacetylase CH55_967 PF01554 MatE CH55_968 PF00764 Arginosuccinate synthase CH55_969 PF01070 FMN-dependent dehydrogenase CH55_97 PF00528 Binding-protein-dependent transport system inner membrane component CH55_971 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH55_971 PF13378 Enolase C-terminal domain-like CH55_972 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH55_974 PF04134 Protein of unknown function, DUF393 CH55_975 PF07690 Major Facilitator Superfamily CH55_976 PF00872 Transposase, Mutator family CH55_977 PF09134 Invasin, domain 3 CH55_977 PF11924 Inverse autotransporter, beta-domain CH55_977 PF02369 Bacterial Ig-like domain (group 1) CH55_978 PF04363 Protein of unknown function (DUF496) CH55_98 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH55_980 PF08411 Exonuclease C-terminal CH55_980 PF00929 Exonuclease CH55_981 PF13520 Amino acid permease CH55_983 PF00465 Iron-containing alcohol dehydrogenase CH55_984 PF00005 ABC transporter CH55_985 PF00005 ABC transporter CH55_986 PF02653 Branched-chain amino acid transport system / permease component CH55_988 PF01370 NAD dependent epimerase/dehydratase family CH55_989 PF01634 ATP phosphoribosyltransferase CH55_989 PF08029 HisG, C-terminal domain CH55_990 PF00815 Histidinol dehydrogenase CH55_991 PF00155 Aminotransferase class I and II CH55_992 PF00475 Imidazoleglycerol-phosphate dehydratase CH55_993 PF00117 Glutamine amidotransferase class-I CH55_994 PF00977 Histidine biosynthesis protein CH55_995 PF00977 Histidine biosynthesis protein CH55_996 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CH55_996 PF01502 Phosphoribosyl-AMP cyclohydrolase CH55_997 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CH55_997 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH55_998 PF00483 Nucleotidyl transferase CH55_999 PF00483 Nucleotidyl transferase