CH55_1	PF03918	Cytochrome C biogenesis protein
CH55_10	PF05175	Methyltransferase small domain
CH55_100	PF00210	Ferritin-like domain
CH55_1000	PF04183	IucA / IucC family
CH55_1000	PF06276	Ferric iron reductase FhuF-like transporter
CH55_1001	PF00593	TonB dependent receptor
CH55_1001	PF07715	TonB-dependent Receptor Plug Domain
CH55_1002	PF01497	Periplasmic binding protein
CH55_1003	PF01032	FecCD transport family
CH55_1004	PF01032	FecCD transport family
CH55_1005	PF00005	ABC transporter
CH55_1006	PF04183	IucA / IucC family
CH55_1006	PF06276	Ferric iron reductase FhuF-like transporter
CH55_1007	PF13523	Acetyltransferase (GNAT) domain
CH55_1008	PF13434	L-lysine 6-monooxygenase (NADPH-requiring)
CH55_1009	PF00282	Pyridoxal-dependent decarboxylase conserved domain
CH55_101	PF13649	Methyltransferase domain
CH55_1010	PF06276	Ferric iron reductase FhuF-like transporter
CH55_1010	PF11575	CH55_1010
CH55_1011	PF00571	CBS domain
CH55_1011	PF03471	Transporter associated domain
CH55_1011	PF03741	CH55_1011
CH55_1012	PF05170	CH55_1012
CH55_1012	PF13502	CH55_1012
CH55_1013	PF00692	dUTPase
CH55_1014	PF00485	Phosphoribulokinase / Uridine kinase family
CH55_1015	PF10609	ParA/MinD ATPase like
CH55_1016	PF01588	Putative tRNA binding domain
CH55_1016	PF09334	tRNA synthetases class I (M)
CH55_1017	PF01797	Transposase IS200 like
CH55_1019	PF13407	Periplasmic binding protein domain
CH55_102	PF00583	Acetyltransferase (GNAT) family
CH55_1020	PF08309	CH55_1020
CH55_1022	PF07690	Major Facilitator Superfamily
CH55_1023	PF03788	CH55_1023
CH55_1024	PF04172	CH55_1024
CH55_1025	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
CH55_1025	PF08211	Cytidine and deoxycytidylate deaminase zinc-binding region
CH55_1026	PF00390	Malic enzyme, N-terminal domain
CH55_1026	PF03949	Malic enzyme, NAD binding domain
CH55_1027	PF02698	DUF218 domain
CH55_1028	PF02653	CH55_1028
CH55_1029	PF00005	ABC transporter
CH55_103	PF00892	EamA-like transporter family
CH55_1030	PF13407	Periplasmic binding protein domain
CH55_1031	PF04235	CH55_1031
CH55_1032	PF01227	GTP cyclohydrolase I
CH55_1033	PF06779	CH55_1033
CH55_1034	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_1034	PF03466	LysR substrate binding domain
CH55_1035	PF00107	Zinc-binding dehydrogenase
CH55_1035	PF08240	Alcohol dehydrogenase GroES-like domain
CH55_1036	PF00756	Putative esterase
CH55_1039	PF13437	HlyD family secretion protein
CH55_104	PF13505	Outer membrane protein beta-barrel domain
CH55_1040	PF00005	ABC transporter
CH55_1041	PF04055	Radical SAM superfamily
CH55_1042	PF00994	Probable molybdopterin binding domain
CH55_1042	PF03453	MoeA N-terminal region (domain I and II)
CH55_1042	PF03454	MoeA C-terminal region (domain IV)
CH55_1043	PF00899	ThiF family
CH55_1044	PF00872	CH55_1044
CH55_1045	PF00872	CH55_1045
CH55_1046	PF16809	CH55_1046
CH55_1047	PF00005	ABC transporter
CH55_1047	PF12848	ABC transporter
CH55_1048	PF16809	CH55_1048
CH55_1049	PF06812	CH55_1049
CH55_1049	PF12486	CH55_1049
CH55_105	PF01545	Cation efflux family
CH55_1050	PF04965	Gene 25-like lysozyme
CH55_1051	PF12790	Type VI secretion lipoprotein
CH55_1052	PF06996	CH55_1052
CH55_1053	PF05947	CH55_1053
CH55_1055	PF05488	PAAR motif
CH55_1055	PF15607	CH55_1055
CH55_1056	PF06812	CH55_1056
CH55_1056	PF16989	CH55_1056
CH55_1057	PF06744	CH55_1057
CH55_1058	PF06744	CH55_1058
CH55_1058	PF06761	CH55_1058
CH55_106	PF16809	CH55_106
CH55_1061	PF01551	Peptidase family M23
CH55_1063	PF10106	CH55_1063
CH55_1065	PF01551	Peptidase family M23
CH55_1066	PF05954	Phage late control gene D protein (GPD)
CH55_1066	PF10106	CH55_1066
CH55_1066	PF13296	CH55_1066
CH55_1067	PF00004	ATPase family associated with various cellular activities (AAA)
CH55_1067	PF07724	AAA domain (Cdc48 subfamily)
CH55_1067	PF10431	C-terminal, D2-small domain, of ClpB protein
CH55_1068	PF05638	Protein of unknown function (DUF796)
CH55_1069	PF00691	OmpA family
CH55_107	PF16809	CH55_107
CH55_1070	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
CH55_1071	PF05936	CH55_1071
CH55_1072	PF05943	CH55_1072
CH55_1074	PF05591	CH55_1074
CH55_1076	PF00698	Acyl transferase domain
CH55_1077	PF00550	Phosphopantetheine attachment site
CH55_1078	PF13924	CH55_1078
CH55_1079	PF13561	Enoyl-(Acyl carrier protein) reductase
CH55_108	PF00107	Zinc-binding dehydrogenase
CH55_108	PF08240	Alcohol dehydrogenase GroES-like domain
CH55_1080	PF00378	Enoyl-CoA hydratase/isomerase family
CH55_1081	PF00378	Enoyl-CoA hydratase/isomerase family
CH55_1082	PF01154	Hydroxymethylglutaryl-coenzyme A synthase N terminal
CH55_1082	PF08540	Hydroxymethylglutaryl-coenzyme A synthase C terminal
CH55_1083	PF13561	Enoyl-(Acyl carrier protein) reductase
CH55_1084	PF00109	Beta-ketoacyl synthase, N-terminal domain
CH55_1084	PF02801	Beta-ketoacyl synthase, C-terminal domain
CH55_1085	PF07977	FabA-like domain
CH55_1087	PF13561	Enoyl-(Acyl carrier protein) reductase
CH55_1088	PF01565	FAD binding domain
CH55_1088	PF13480	Acetyltransferase (GNAT) domain
CH55_1089	PF08031	Berberine and berberine like
CH55_109	PF13407	Periplasmic binding protein domain
CH55_1093	PF13610	CH55_1093
CH55_1095	PF04358	DsrC like protein
CH55_1096	PF00708	Acylphosphatase
CH55_1097	PF10672	S-adenosylmethionine-dependent methyltransferase
CH55_1098	PF08755	Hemimethylated DNA-binding protein YccV like
CH55_1099	PF13380	CoA binding domain
CH55_11	PF01264	Chorismate synthase
CH55_110	PF00005	ABC transporter
CH55_1100	PF09829	CH55_1100
CH55_1101	PF02142	MGS-like domain
CH55_1102	PF00580	UvrD/REP helicase N-terminal domain
CH55_1102	PF12462	CH55_1102
CH55_1102	PF13361	UvrD-like helicase C-terminal domain
CH55_1103	PF03733	CH55_1103
CH55_1104	PF12805	CH55_1104
CH55_1104	PF13515	CH55_1104
CH55_1105	PF04993	TfoX N-terminal domain
CH55_1105	PF04994	TfoX C-terminal domain
CH55_1106	PF03846	Cell division inhibitor SulA
CH55_1107	PF00691	OmpA family
CH55_1107	PF01389	OmpA-like transmembrane domain
CH55_1108	PF01797	Transposase IS200 like
CH55_1109	PF06303	Organiser of macrodomain of Terminus of chromosome
CH55_1109	PF17414	CH55_1109
CH55_111	PF02653	CH55_111
CH55_1110	PF05362	Lon protease (S16) C-terminal proteolytic domain
CH55_1110	PF13654	AAA domain
CH55_1111	PF07977	FabA-like domain
CH55_1113	PF00109	Beta-ketoacyl synthase, N-terminal domain
CH55_1114	PF00665	Integrase core domain
CH55_1114	PF02796	Helix-turn-helix domain of resolvase
CH55_1115	PF01695	IstB-like ATP binding protein
CH55_1116	PF01695	IstB-like ATP binding protein
CH55_1117	PF00109	Beta-ketoacyl synthase, N-terminal domain
CH55_1117	PF02801	Beta-ketoacyl synthase, C-terminal domain
CH55_1118	PF01797	Transposase IS200 like
CH55_1119	PF03886	Protein of unknown function (DUF330)
CH55_112	PF00356	Bacterial regulatory proteins, lacI family
CH55_112	PF13407	Periplasmic binding protein domain
CH55_1120	PF02470	CH55_1120
CH55_1121	PF04403	CH55_1121
CH55_1122	PF00005	ABC transporter
CH55_1122	PF12848	ABC transporter
CH55_1122	PF16326	CH55_1122
CH55_1123	PF01170	Putative RNA methylase family UPF0020
CH55_1123	PF02926	THUMP domain
CH55_1123	PF10672	S-adenosylmethionine-dependent methyltransferase
CH55_1124	PF00111	2Fe-2S iron-sulfur cluster binding domain
CH55_1124	PF03473	MOSC domain
CH55_1124	PF03476	MOSC N-terminal beta barrel domain
CH55_1125	PF07126	CH55_1125
CH55_1126	PF01180	Dihydroorotate dehydrogenase
CH55_1127	PF01433	Peptidase family M1
CH55_1127	PF11940	Domain of unknown function (DUF3458)
CH55_1127	PF17432	CH55_1127
CH55_1128	PF04095	Nicotinate phosphoribosyltransferase (NAPRTase) family
CH55_1129	PF00152	tRNA synthetases class II (D, K and N)
CH55_1129	PF01336	OB-fold nucleic acid binding domain
CH55_113	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_113	PF03466	LysR substrate binding domain
CH55_1130	PF00267	Gram-negative porin
CH55_1131	PF00155	Aminotransferase class I and II
CH55_1132	PF00753	Metallo-beta-lactamase superfamily
CH55_1133	PF05951	CH55_1133
CH55_1134	PF01471	Putative peptidoglycan binding domain
CH55_1134	PF03734	L,D-transpeptidase catalytic domain
CH55_1135	PF01797	Transposase IS200 like
CH55_1136	PF04310	MukB N-terminal
CH55_1136	PF13558	Putative exonuclease SbcCD, C subunit
CH55_1136	PF16330	CH55_1136
CH55_1137	PF04288	MukE-like family
CH55_1138	PF03882	KicB killing factor
CH55_1138	PF17192	CH55_1138
CH55_1138	PF17193	CH55_1138
CH55_1139	PF13847	Methyltransferase domain
CH55_114	PF00180	Isocitrate/isopropylmalate dehydrogenase
CH55_1140	PF03881	Fructosamine kinase
CH55_1141	PF02348	Cytidylyltransferase
CH55_1142	PF03966	Trm112p-like protein
CH55_1143	PF00313	'Cold-shock' DNA-binding domain
CH55_1144	PF07063	Domain of unknown function (DUF1338)
CH55_1145	PF02606	Tetraacyldisaccharide-1-P 4'-kinase
CH55_1146	PF00005	ABC transporter
CH55_1146	PF00664	ABC transporter transmembrane region
CH55_1147	PF00753	Metallo-beta-lactamase superfamily
CH55_1147	PF03772	CH55_1147
CH55_1149	PF00216	Bacterial DNA-binding protein
CH55_115	PF02028	BCCT family transporter
CH55_1151	PF00575	S1 RNA binding domain
CH55_1152	PF02224	Cytidylate kinase
CH55_1153	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
CH55_1154	PF00266	Aminotransferase class-V
CH55_1155	PF03895	YadA-like C-terminal region
CH55_1156	PF03895	YadA-like C-terminal region
CH55_1157	PF00710	Asparaginase
CH55_1158	PF02624	YcaO-like family
CH55_1159	PF01226	Formate/nitrite transporter
CH55_116	PF00355	Rieske [2Fe-2S] domain
CH55_116	PF00848	Ring hydroxylating alpha subunit (catalytic domain)
CH55_1160	PF01228	Glycine radical
CH55_1160	PF02901	Pyruvate formate lyase
CH55_1161	PF01755	CH55_1161
CH55_1162	PF04055	Radical SAM superfamily
CH55_1162	PF13353	4Fe-4S single cluster domain
CH55_1163	PF07690	Major Facilitator Superfamily
CH55_1164	PF00665	Integrase core domain
CH55_1164	PF02796	Helix-turn-helix domain of resolvase
CH55_1165	PF01695	IstB-like ATP binding protein
CH55_1166	PF07690	Major Facilitator Superfamily
CH55_1167	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
CH55_1167	PF02403	Seryl-tRNA synthetase N-terminal domain
CH55_1168	PF00004	ATPase family associated with various cellular activities (AAA)
CH55_1168	PF12002	MgsA AAA+ ATPase C terminal
CH55_1168	PF16193	CH55_1168
CH55_117	PF00848	Ring hydroxylating alpha subunit (catalytic domain)
CH55_1170	PF03548	Outer membrane lipoprotein carrier protein LolA
CH55_1171	PF01580	FtsK/SpoIIIE family
CH55_1171	PF09397	Ftsk gamma domain
CH55_1171	PF13491	CH55_1171
CH55_1172	PF01037	AsnC family
CH55_1172	PF13412	Winged helix-turn-helix DNA-binding
CH55_1173	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH55_1174	PF00005	ABC transporter
CH55_1174	PF00664	ABC transporter transmembrane region
CH55_1175	PF00005	ABC transporter
CH55_1175	PF00664	ABC transporter transmembrane region
CH55_1177	PF03588	Leucyl/phenylalanyl-tRNA protein transferase
CH55_1178	PF01176	Translation initiation factor 1A / IF-1
CH55_1179	PF01797	Transposase IS200 like
CH55_118	PF00111	2Fe-2S iron-sulfur cluster binding domain
CH55_118	PF00175	Oxidoreductase NAD-binding domain
CH55_118	PF00970	Oxidoreductase FAD-binding domain
CH55_1180	PF00004	ATPase family associated with various cellular activities (AAA)
CH55_1180	PF02861	Clp amino terminal domain
CH55_1180	PF07724	AAA domain (Cdc48 subfamily)
CH55_1180	PF10431	C-terminal, D2-small domain, of ClpB protein
CH55_1181	PF02617	ATP-dependent Clp protease adaptor protein ClpS
CH55_1182	PF00313	'Cold-shock' DNA-binding domain
CH55_1183	PF00005	ABC transporter
CH55_1183	PF02687	CH55_1183
CH55_1183	PF12704	MacB-like periplasmic core domain
CH55_1184	PF16576	CH55_1184
CH55_1185	PF04393	CH55_1185
CH55_1186	PF11398	Protein of unknown function (DUF2813)
CH55_1187	PF03956	CH55_1187
CH55_1188	PF03063	Prismane/CO dehydrogenase family
CH55_1189	PF00111	2Fe-2S iron-sulfur cluster binding domain
CH55_1189	PF00175	Oxidoreductase NAD-binding domain
CH55_1189	PF00970	Oxidoreductase FAD-binding domain
CH55_119	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
CH55_119	PF08479	POTRA domain, ShlB-type
CH55_119	PF17287	CH55_119
CH55_1190	PF00205	Thiamine pyrophosphate enzyme, central domain
CH55_1190	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CH55_1190	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
CH55_1191	PF01212	Beta-eliminating lyase
CH55_1192	PF11066	CH55_1192
CH55_1192	PF13460	NADH(P)-binding
CH55_1193	PF01370	NAD dependent epimerase/dehydratase family
CH55_1194	PF12883	Protein of unknown function (DUF3828)
CH55_1195	PF01817	Chorismate mutase type II
CH55_1196	PF00005	ABC transporter
CH55_1197	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH55_1198	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_1199	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_12	PF03411	Penicillin-insensitive murein endopeptidase
CH55_120	PF05594	CH55_120
CH55_120	PF05860	haemagglutination activity domain
CH55_120	PF13018	CH55_120
CH55_1200	PF00892	EamA-like transporter family
CH55_1201	PF10100	CH55_1201
CH55_1202	PF03059	Nicotianamine synthase protein
CH55_1203	PF00005	ABC transporter
CH55_1204	PF01032	FecCD transport family
CH55_1206	PF01497	Periplasmic binding protein
CH55_1207	PF01145	SPFH domain / Band 7 family
CH55_1209	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH55_121	PF04829	CH55_121
CH55_121	PF13332	CH55_121
CH55_1210	PF05958	tRNA (Uracil-5-)-methyltransferase
CH55_1211	PF10767	CH55_1211
CH55_1212	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_1213	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_1214	PF00005	ABC transporter
CH55_1214	PF08402	TOBE domain
CH55_1215	PF13416	Bacterial extracellular solute-binding protein
CH55_1216	PF10722	Putative bacterial sensory transduction regulator
CH55_1217	PF07214	CH55_1217
CH55_1218	PF00462	Glutaredoxin
CH55_1219	PF02080	TrkA-C domain
CH55_1219	PF06826	CH55_1219
CH55_122	PF10004	CH55_122
CH55_1220	PF01569	PAP2 superfamily
CH55_1221	PF01569	PAP2 superfamily
CH55_1222	PF01791	DeoC/LacD family aldolase
CH55_1223	PF00455	CH55_1223
CH55_1223	PF08220	DeoR-like helix-turn-helix domain
CH55_1224	PF03222	Tryptophan/tyrosine permease family
CH55_1226	PF00768	D-alanyl-D-alanine carboxypeptidase
CH55_1226	PF07943	Penicillin-binding protein 5, C-terminal domain
CH55_1227	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_1228	PF00005	ABC transporter
CH55_1228	PF09383	NIL domain
CH55_1229	PF03180	NLPA lipoprotein
CH55_1230	PF03171	2OG-Fe(II) oxygenase superfamily
CH55_1230	PF14226	non-haem dioxygenase in morphine synthesis N-terminal
CH55_1231	PF12710	haloacid dehalogenase-like hydrolase
CH55_1232	PF00043	Glutathione S-transferase, C-terminal domain
CH55_1232	PF13417	Glutathione S-transferase, N-terminal domain
CH55_1233	PF00593	TonB dependent receptor
CH55_1233	PF07715	TonB-dependent Receptor Plug Domain
CH55_1234	PF00005	ABC transporter
CH55_1235	PF01032	FecCD transport family
CH55_1236	PF01497	Periplasmic binding protein
CH55_1237	PF00324	Amino acid permease
CH55_1238	PF00324	Amino acid permease
CH55_124	PF04829	CH55_124
CH55_1240	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_1240	PF03466	LysR substrate binding domain
CH55_1241	PF03601	CH55_1241
CH55_1242	PF01261	Xylose isomerase-like TIM barrel
CH55_1243	PF00577	Outer membrane usher protein
CH55_1243	PF13953	PapC C-terminal domain
CH55_1243	PF13954	PapC N-terminal domain
CH55_1244	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH55_1244	PF02753	Pili assembly chaperone PapD, C-terminal domain
CH55_1246	PF17550	CH55_1246
CH55_1247	PF00486	Transcriptional regulatory protein, C terminal
CH55_1248	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
CH55_1248	PF02378	Phosphotransferase system, EIIC
CH55_1249	PF00294	pfkB family carbohydrate kinase
CH55_1250	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
CH55_1250	PF00381	PTS HPr component phosphorylation site
CH55_1251	PF00293	NUDIX domain
CH55_1252	PF02653	CH55_1252
CH55_1253	PF00005	ABC transporter
CH55_1254	PF13407	Periplasmic binding protein domain
CH55_1255	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
CH55_1256	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
CH55_1256	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
CH55_1257	PF00171	Aldehyde dehydrogenase family
CH55_1258	PF01557	Fumarylacetoacetate (FAA) hydrolase family
CH55_1259	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
CH55_1259	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
CH55_126	PF14106	CH55_126
CH55_1260	PF13561	Enoyl-(Acyl carrier protein) reductase
CH55_1261	PF03692	CH55_1261
CH55_1262	PF03222	Tryptophan/tyrosine permease family
CH55_1263	PF01132	Elongation factor P (EF-P) OB domain
CH55_1263	PF08207	Elongation factor P (EF-P) KOW-like domain
CH55_1263	PF09285	Elongation factor P, C-terminal
CH55_1264	PF03786	D-mannonate dehydratase (UxuA)
CH55_1265	PF01232	Mannitol dehydrogenase Rossmann domain
CH55_1265	PF08125	Mannitol dehydrogenase C-terminal domain
CH55_1266	PF00392	Bacterial regulatory proteins, gntR family
CH55_1266	PF07729	FCD domain
CH55_1268	PF02492	CobW/HypB/UreG, nucleotide-binding domain
CH55_1268	PF07683	Cobalamin synthesis protein cobW C-terminal domain
CH55_1269	PF01569	PAP2 superfamily
CH55_1270	PF00877	NlpC/P60 family
CH55_1272	PF00563	EAL domain
CH55_1272	PF12792	CH55_1272
CH55_1273	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH55_1274	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_1275	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_1275	PF12911	CH55_1275
CH55_1276	PF00005	ABC transporter
CH55_1276	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CH55_1277	PF13989	CH55_1277
CH55_1278	PF07690	Major Facilitator Superfamily
CH55_1279	PF00849	RNA pseudouridylate synthase
CH55_1279	PF01479	S4 domain
CH55_1280	PF00271	Helicase conserved C-terminal domain
CH55_1280	PF04851	Type III restriction enzyme, res subunit
CH55_1281	PF01386	Ribosomal L25p family
CH55_1282	PF01797	Transposase IS200 like
CH55_1283	PF01797	Transposase IS200 like
CH55_1284	PF04245	CH55_1284
CH55_1285	PF07208	Protein of unknown function (DUF1414)
CH55_1286	PF00884	Sulfatase
CH55_1286	PF11893	CH55_1286
CH55_1289	PF12639	DNase/tRNase domain of colicin-like bacteriocin
CH55_129	PF00005	ABC transporter
CH55_129	PF08402	TOBE domain
CH55_1293	PF00232	Glycosyl hydrolase family 1
CH55_1295	PF01380	SIS domain
CH55_1295	PF01418	Helix-turn-helix domain, rpiR family
CH55_1296	PF07484	Phage Tail Collar Domain
CH55_1297	PF10076	CH55_1297
CH55_1298	PF10076	CH55_1298
CH55_1299	PF04865	CH55_1299
CH55_13	PF01925	CH55_13
CH55_130	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
CH55_130	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
CH55_130	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
CH55_130	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
CH55_1300	PF07409	CH55_1300
CH55_1301	PF06890	Bacteriophage Mu Gp45 protein
CH55_1302	PF05954	Phage late control gene D protein (GPD)
CH55_1303	PF07157	CH55_1303
CH55_1305	PF10109	CH55_1305
CH55_1306	PF10618	CH55_1306
CH55_1307	PF04984	Phage tail sheath protein
CH55_1307	PF17482	CH55_1307
CH55_1308	PF10948	CH55_1308
CH55_131	PF00356	Bacterial regulatory proteins, lacI family
CH55_131	PF13377	Periplasmic binding protein-like domain
CH55_1311	PF01261	Xylose isomerase-like TIM barrel
CH55_1312	PF00455	CH55_1312
CH55_1312	PF08220	DeoR-like helix-turn-helix domain
CH55_1313	PF00596	Class II Aldolase and Adducin N-terminal domain
CH55_1314	PF07005	Protein of unknown function, DUF1537
CH55_1314	PF17042	CH55_1314
CH55_1315	PF06530	CH55_1315
CH55_1316	PF00717	Peptidase S24-like
CH55_1316	PF01381	Helix-turn-helix
CH55_1317	PF06183	DinI-like family
CH55_1318	PF01278	Omptin family
CH55_1319	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CH55_1319	PF00672	HAMP domain
CH55_1319	PF02743	Cache domain
CH55_132	PF13416	Bacterial extracellular solute-binding protein
CH55_1320	PF12706	Beta-lactamase superfamily domain
CH55_1321	PF13347	MFS/sugar transport protein
CH55_1322	PF00144	Beta-lactamase
CH55_1325	PF01797	Transposase IS200 like
CH55_1326	PF00267	Gram-negative porin
CH55_1328	PF07690	Major Facilitator Superfamily
CH55_1329	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_133	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_1330	PF01627	Hpt domain
CH55_1330	PF16359	CH55_1330
CH55_1331	PF00072	Response regulator receiver domain
CH55_1331	PF00196	Bacterial regulatory proteins, luxR family
CH55_1332	PF00072	Response regulator receiver domain
CH55_1332	PF00512	His Kinase A (phospho-acceptor) domain
CH55_1332	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_1332	PF09456	RcsC Alpha-Beta-Loop (ABL)
CH55_1333	PF00521	DNA gyrase/topoisomerase IV, subunit A
CH55_1333	PF03989	DNA gyrase C-terminal domain, beta-propeller
CH55_1334	PF13489	Methyltransferase domain
CH55_1335	PF00317	Ribonucleotide reductase, all-alpha domain
CH55_1335	PF02867	Ribonucleotide reductase, barrel domain
CH55_1335	PF03477	ATP cone domain
CH55_1336	PF00268	Ribonucleotide reductase, small chain
CH55_1337	PF00111	2Fe-2S iron-sulfur cluster binding domain
CH55_1338	PF03974	Ecotin
CH55_1339	PF00994	Probable molybdopterin binding domain
CH55_134	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_1340	PF03222	Tryptophan/tyrosine permease family
CH55_1341	PF07437	CH55_1341
CH55_1342	PF00199	Catalase
CH55_1342	PF06628	Catalase-related immune-responsive
CH55_1343	PF06733	DEAD_2
CH55_1343	PF13307	Helicase C-terminal domain
CH55_1344	PF00267	Gram-negative porin
CH55_1345	PF00892	EamA-like transporter family
CH55_1347	PF01276	Orn/Lys/Arg decarboxylase, major domain
CH55_1347	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
CH55_1347	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
CH55_1348	PF13520	Amino acid permease
CH55_1349	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_135	PF04041	Domain of unknown function (DUF377)
CH55_1350	PF00005	ABC transporter
CH55_1351	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_1352	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
CH55_1353	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
CH55_1354	PF00581	Rhodanese-like domain
CH55_1355	PF00282	Pyridoxal-dependent decarboxylase conserved domain
CH55_1356	PF13640	2OG-Fe(II) oxygenase superfamily
CH55_1357	PF00005	ABC transporter
CH55_1358	PF00005	ABC transporter
CH55_1358	PF02653	CH55_1358
CH55_1358	PF12399	Branched-chain amino acid ATP-binding cassette transporter
CH55_1359	PF02653	CH55_1359
CH55_1359	PF13646	HEAT repeats
CH55_136	PF08950	Protein of unknown function (DUF1861)
CH55_1360	PF13433	Periplasmic binding protein domain
CH55_1361	PF07308	CH55_1361
CH55_1362	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_1364	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_1365	PF12974	ABC transporter, phosphonate, periplasmic substrate-binding protein
CH55_1366	PF00005	ABC transporter
CH55_1367	PF04226	CH55_1367
CH55_1368	PF05076	Suppressor of fused protein (SUFU)
CH55_1369	PF01844	HNH endonuclease
CH55_1370	PF01928	CYTH domain
CH55_1371	PF01565	FAD binding domain
CH55_1371	PF09330	D-lactate dehydrogenase, membrane binding
CH55_1372	PF00768	D-alanyl-D-alanine carboxypeptidase
CH55_1374	PF01207	Dihydrouridine synthase (Dus)
CH55_1376	PF01797	Transposase IS200 like
CH55_1377	PF00270	DEAD/DEAH box helicase
CH55_1377	PF00271	Helicase conserved C-terminal domain
CH55_1378	PF00872	CH55_1378
CH55_1380	PF06836	CH55_1380
CH55_1381	PF06836	CH55_1381
CH55_1382	PF06836	CH55_1382
CH55_1384	PF05638	Protein of unknown function (DUF796)
CH55_1385	PF01797	Transposase IS200 like
CH55_1386	PF00117	Glutamine amidotransferase class-I
CH55_1386	PF00958	GMP synthase C terminal domain
CH55_1386	PF02540	NAD synthase
CH55_1387	PF00478	IMP dehydrogenase / GMP reductase domain
CH55_1387	PF00571	CBS domain
CH55_1388	PF02601	CH55_1388
CH55_1388	PF13742	CH55_1388
CH55_1389	PF07191	zinc-ribbons
CH55_139	PF00924	Mechanosensitive ion channel
CH55_1390	PF03547	CH55_1390
CH55_1391	PF01926	50S ribosome-binding GTPase
CH55_1391	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
CH55_1392	PF13360	PQQ-like domain
CH55_1393	PF09976	Tetratricopeptide repeat
CH55_1394	PF03129	Anticodon binding domain
CH55_1394	PF13393	Histidyl-tRNA synthetase
CH55_1395	PF04551	GcpE protein
CH55_1396	PF13413	Helix-turn-helix domain
CH55_1396	PF13464	CH55_1396
CH55_1397	PF13181	Tetratricopeptide repeat
CH55_1397	PF13431	Tetratricopeptide repeat
CH55_1398	PF04055	Radical SAM superfamily
CH55_1399	PF00334	Nucleoside diphosphate kinase
CH55_14	PF04315	CH55_14
CH55_140	PF01867	CRISPR associated protein Cas1
CH55_1400	PF00030	Beta/Gamma crystallin
CH55_1400	PF08964	Beta/Gamma crystallin
CH55_1400	PF09101	Exotoxin A binding
CH55_1402	PF03212	Pertactin
CH55_1402	PF03797	Autotransporter beta-domain
CH55_1403	PF03212	Pertactin
CH55_1403	PF03797	Autotransporter beta-domain
CH55_1404	PF03797	Autotransporter beta-domain
CH55_1405	PF07179	CH55_1405
CH55_1405	PF14581	CH55_1405
CH55_1406	PF00883	Cytosol aminopeptidase family, catalytic domain
CH55_1406	PF12404	CH55_1406
CH55_1407	PF04384	Iron-sulphur cluster assembly
CH55_1408	PF00111	2Fe-2S iron-sulfur cluster binding domain
CH55_1409	PF00012	Hsp70 protein
CH55_1410	PF00226	DnaJ domain
CH55_1410	PF07743	HSCB C-terminal oligomerisation domain
CH55_1411	PF01521	Iron-sulphur cluster biosynthesis
CH55_1412	PF01592	NifU-like N terminal domain
CH55_1413	PF00266	Aminotransferase class-V
CH55_1414	PF02082	Transcriptional regulator
CH55_1415	PF00588	SpoU rRNA Methylase family
CH55_1416	PF00459	Inositol monophosphatase family
CH55_1417	PF01797	Transposase IS200 like
CH55_1418	PF03824	CH55_1418
CH55_1419	PF06226	CH55_1419
CH55_142	PF09611	CH55_142
CH55_1420	PF12832	MFS_1 like family
CH55_1421	PF00874	PRD domain
CH55_1422	PF13505	Outer membrane protein beta-barrel domain
CH55_1423	PF00464	Serine hydroxymethyltransferase
CH55_1424	PF00042	Globin
CH55_1424	PF00175	Oxidoreductase NAD-binding domain
CH55_1424	PF00970	Oxidoreductase FAD-binding domain
CH55_1425	PF14502	Helix-turn-helix domain
CH55_1425	PF14503	YhfZ C-terminal domain
CH55_1426	PF14503	YhfZ C-terminal domain
CH55_1427	PF00543	Nitrogen regulatory protein P-II
CH55_1428	PF00795	Carbon-nitrogen hydrolase
CH55_1428	PF02540	NAD synthase
CH55_1429	PF00072	Response regulator receiver domain
CH55_1429	PF00158	Sigma-54 interaction domain
CH55_143	PF09614	CH55_143
CH55_1430	PF13942	CH55_1430
CH55_1431	PF00512	His Kinase A (phospho-acceptor) domain
CH55_1431	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_1432	PF01797	Transposase IS200 like
CH55_1436	PF02769	AIR synthase related protein, C-terminal domain
CH55_1436	PF13507	CobB/CobQ-like glutamine amidotransferase domain
CH55_1437	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH55_1437	PF01464	Transglycosylase SLT domain
CH55_1438	PF14437	CH55_1438
CH55_1439	PF12710	haloacid dehalogenase-like hydrolase
CH55_144	PF09615	CH55_144
CH55_1440	PF01380	SIS domain
CH55_1441	PF01380	SIS domain
CH55_1441	PF01418	Helix-turn-helix domain, rpiR family
CH55_1442	PF12838	4Fe-4S dicluster domain
CH55_1443	PF01797	Transposase IS200 like
CH55_1444	PF01648	4'-phosphopantetheinyl transferase superfamily
CH55_1445	PF03740	Pyridoxal phosphate biosynthesis protein PdxJ
CH55_1446	PF02565	Recombination protein O C terminal
CH55_1446	PF11967	Recombination protein O N terminal
CH55_1447	PF01926	50S ribosome-binding GTPase
CH55_1447	PF07650	KH domain
CH55_1448	PF00035	Double-stranded RNA binding motif
CH55_1448	PF14622	Ribonuclease-III-like
CH55_1449	PF00717	Peptidase S24-like
CH55_1449	PF10502	Signal peptidase, peptidase S26
CH55_145	PF09618	CRISPR-associated protein (Cas_Csy4)
CH55_1450	PF00009	Elongation factor Tu GTP binding domain
CH55_1450	PF00679	Elongation factor G C-terminus
CH55_1450	PF03144	Elongation factor Tu domain 2
CH55_1450	PF06421	GTP-binding protein LepA C-terminus
CH55_1452	PF04246	CH55_1452
CH55_1453	PF03888	MucB/RseB family
CH55_1453	PF17188	CH55_1453
CH55_1454	PF03872	Anti sigma-E protein RseA, N-terminal domain
CH55_1454	PF03873	Anti sigma-E protein RseA, C-terminal domain
CH55_1455	PF04542	Sigma-70 region 2
CH55_1455	PF08281	Sigma-70, region 4
CH55_1456	PF00890	FAD binding domain
CH55_1456	PF02910	Fumarate reductase flavoprotein C-term
CH55_1457	PF05175	Methyltransferase small domain
CH55_1458	PF00270	DEAD/DEAH box helicase
CH55_1458	PF00271	Helicase conserved C-terminal domain
CH55_146	PF00248	Aldo/keto reductase family
CH55_1462	PF11187	Protein of unknown function (DUF2974)
CH55_1463	PF01228	Glycine radical
CH55_1464	PF03167	Uracil DNA glycosylase superfamily
CH55_1465	PF01470	Pyroglutamyl peptidase
CH55_1466	PF06166	CH55_1466
CH55_1467	PF06149	CH55_1467
CH55_1468	PF03746	LamB/YcsF family
CH55_1469	PF02626	Allophanate hydrolase subunit 2
CH55_1470	PF02682	Allophanate hydrolase subunit 1
CH55_1472	PF01784	NIF3 (NGG1p interacting factor 3)
CH55_1473	PF02112	CH55_1473
CH55_1474	PF00875	DNA photolyase
CH55_1474	PF03441	FAD binding domain of DNA photolyase
CH55_1475	PF08349	CH55_1475
CH55_1476	PF10725	CH55_1476
CH55_1477	PF03814	CH55_1477
CH55_1478	PF00122	E1-E2 ATPase
CH55_1478	PF00702	haloacid dehalogenase-like hydrolase
CH55_1479	PF02669	CH55_1479
CH55_148	PF08714	Formaldehyde-activating enzyme (Fae)
CH55_1480	PF00512	His Kinase A (phospho-acceptor) domain
CH55_1480	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_1480	PF02702	Osmosensitive K+ channel His kinase sensor domain
CH55_1480	PF13492	GAF domain
CH55_1480	PF13493	Domain of unknown function (DUF4118)
CH55_1481	PF00072	Response regulator receiver domain
CH55_1481	PF00486	Transcriptional regulatory protein, C terminal
CH55_1482	PF00892	EamA-like transporter family
CH55_1485	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
CH55_1485	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
CH55_1485	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
CH55_1485	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
CH55_1486	PF03925	SeqA protein
CH55_1486	PF17206	CH55_1486
CH55_1489	PF04794	YdjC-like protein
CH55_149	PF00083	Sugar (and other) transporter
CH55_1490	PF07883	Cupin domain
CH55_1490	PF12833	Helix-turn-helix domain
CH55_1491	PF02255	PTS system, Lactose/Cellobiose specific IIA subunit
CH55_1492	PF02378	Phosphotransferase system, EIIC
CH55_1493	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
CH55_1494	PF02537	CH55_1494
CH55_1495	PF02537	CH55_1495
CH55_1496	PF02254	TrkA-N domain
CH55_1496	PF07885	Ion channel
CH55_1497	PF06411	HdeA/HdeB family
CH55_1498	PF03824	CH55_1498
CH55_1499	PF03253	Urea transporter
CH55_15	PF08891	CH55_15
CH55_1500	PF01774	UreD urease accessory protein
CH55_1501	PF02492	CobW/HypB/UreG, nucleotide-binding domain
CH55_1502	PF01730	UreF
CH55_1503	PF02814	UreE urease accessory protein, N-terminal domain
CH55_1503	PF05194	UreE urease accessory protein, C-terminal domain
CH55_1504	PF00449	Urease alpha-subunit, N-terminal domain
CH55_1504	PF01979	Amidohydrolase family
CH55_1505	PF00699	Urease beta subunit
CH55_1506	PF00547	Urease, gamma subunit
CH55_1508	PF00005	ABC transporter
CH55_1509	PF00005	ABC transporter
CH55_151	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_151	PF03466	LysR substrate binding domain
CH55_1510	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_1511	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_1512	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH55_1513	PF00313	'Cold-shock' DNA-binding domain
CH55_1514	PF04899	CH55_1514
CH55_1515	PF06711	CH55_1515
CH55_1516	PF09400	Protein of unknown function (DUF2002)
CH55_1517	PF06392	CH55_1517
CH55_1518	PF00462	Glutaredoxin
CH55_1519	PF07972	NrdI Flavodoxin like
CH55_152	PF00765	Autoinducer synthetase
CH55_1520	PF00317	Ribonucleotide reductase, all-alpha domain
CH55_1520	PF02867	Ribonucleotide reductase, barrel domain
CH55_1520	PF08343	Ribonucleotide reductase N-terminal
CH55_1521	PF00268	Ribonucleotide reductase, small chain
CH55_1522	PF00005	ABC transporter
CH55_1522	PF00571	CBS domain
CH55_1523	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_1524	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
CH55_1525	PF01522	Polysaccharide deacetylase
CH55_1526	PF00665	Integrase core domain
CH55_1526	PF02796	Helix-turn-helix domain of resolvase
CH55_1527	PF01695	IstB-like ATP binding protein
CH55_1528	PF01695	IstB-like ATP binding protein
CH55_1529	PF13356	Domain of unknown function (DUF4102)
CH55_153	PF00196	Bacterial regulatory proteins, luxR family
CH55_153	PF03472	Autoinducer binding domain
CH55_1530	PF01527	Transposase
CH55_1532	PF12697	Alpha/beta hydrolase family
CH55_1534	PF01402	Ribbon-helix-helix protein, copG family
CH55_1535	PF00258	Flavodoxin
CH55_1536	PF01475	Ferric uptake regulator family
CH55_1537	PF00728	Glycosyl hydrolase family 20, catalytic domain
CH55_1537	PF02838	Glycosyl hydrolase family 20, domain 2
CH55_1537	PF03174	Chitobiase/beta-hexosaminidase C-terminal domain
CH55_1538	PF03173	Putative carbohydrate binding domain
CH55_1539	PF03573	outer membrane porin, OprD family
CH55_154	PF00892	EamA-like transporter family
CH55_1540	PF00749	tRNA synthetases class I (E and Q), catalytic domain
CH55_1540	PF03950	tRNA synthetases class I (E and Q), anti-codon binding domain
CH55_1541	PF01797	Transposase IS200 like
CH55_1542	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
CH55_1542	PF00367	phosphotransferase system, EIIB
CH55_1542	PF02378	Phosphotransferase system, EIIC
CH55_1543	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
CH55_1544	PF01979	Amidohydrolase family
CH55_1545	PF00480	ROK family
CH55_1545	PF01047	MarR family
CH55_1546	PF13242	HAD-hyrolase-like
CH55_1546	PF13344	Haloacid dehalogenase-like hydrolase
CH55_1547	PF00733	Asparagine synthase
CH55_1547	PF13537	Glutamine amidotransferase domain
CH55_1554	PF01494	FAD binding domain
CH55_1555	PF00919	Uncharacterized protein family UPF0004
CH55_1555	PF01938	TRAM domain
CH55_1555	PF04055	Radical SAM superfamily
CH55_1556	PF02562	PhoH-like protein
CH55_1557	PF02130	Uncharacterized protein family UPF0054
CH55_1558	PF00571	CBS domain
CH55_1558	PF03471	Transporter associated domain
CH55_1559	PF00795	Carbon-nitrogen hydrolase
CH55_156	PF00581	Rhodanese-like domain
CH55_156	PF12368	CH55_156
CH55_1560	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH55_1561	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_1562	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_1563	PF00005	ABC transporter
CH55_1564	PF07295	CH55_1564
CH55_1565	PF00133	tRNA synthetases class I (I, L, M and V)
CH55_1565	PF08264	Anticodon-binding domain of tRNA
CH55_1565	PF13603	Leucyl-tRNA synthetase, Domain 2
CH55_1566	PF04390	Lipopolysaccharide-assembly
CH55_1567	PF06144	DNA polymerase III, delta subunit
CH55_1567	PF14840	Processivity clamp loader gamma complex DNA pol III C-term
CH55_1568	PF01467	Cytidylyltransferase
CH55_1569	PF02410	Oligomerisation domain
CH55_157	PF01594	CH55_157
CH55_1570	PF02590	Predicted SPOUT methyltransferase
CH55_1571	PF00905	Penicillin binding protein transpeptidase domain
CH55_1571	PF03717	Penicillin-binding Protein dimerisation domain
CH55_1572	PF01098	CH55_1572
CH55_1573	PF03330	Rare lipoprotein A (RlpA)-like double-psi beta-barrel
CH55_1573	PF05036	Sporulation related domain
CH55_1574	PF00768	D-alanyl-D-alanine carboxypeptidase
CH55_1575	PF07943	Penicillin-binding protein 5, C-terminal domain
CH55_1576	PF04359	Protein of unknown function (DUF493)
CH55_1577	PF03099	Biotin/lipoate A/B protein ligase family
CH55_1578	PF04055	Radical SAM superfamily
CH55_1578	PF16881	CH55_1578
CH55_1579	PF02416	mttA/Hcf106 family
CH55_158	PF00196	Bacterial regulatory proteins, luxR family
CH55_1580	PF02537	CH55_1580
CH55_1581	PF00313	'Cold-shock' DNA-binding domain
CH55_1582	PF00313	'Cold-shock' DNA-binding domain
CH55_1583	PF00196	Bacterial regulatory proteins, luxR family
CH55_1586	PF08971	Glycogen synthesis protein
CH55_1587	PF03992	Antibiotic biosynthesis monooxygenase
CH55_1588	PF00005	ABC transporter
CH55_1588	PF00664	ABC transporter transmembrane region
CH55_159	PF01266	FAD dependent oxidoreductase
CH55_1590	PF04962	KduI/IolB family
CH55_1591	PF01261	Xylose isomerase-like TIM barrel
CH55_1592	PF00294	pfkB family carbohydrate kinase
CH55_1592	PF09863	Uncharacterized protein conserved in bacteria (DUF2090)
CH55_1593	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
CH55_1593	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
CH55_1594	PF02653	CH55_1594
CH55_1595	PF00005	ABC transporter
CH55_1596	PF13407	Periplasmic binding protein domain
CH55_1597	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
CH55_1598	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
CH55_1599	PF00205	Thiamine pyrophosphate enzyme, central domain
CH55_1599	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CH55_1599	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
CH55_16	PF01266	FAD dependent oxidoreductase
CH55_16	PF05430	S-adenosyl-L-methionine-dependent methyltransferase
CH55_160	PF13991	CH55_160
CH55_1600	PF00171	Aldehyde dehydrogenase family
CH55_1602	PF01380	SIS domain
CH55_1602	PF01418	Helix-turn-helix domain, rpiR family
CH55_1603	PF07274	CH55_1603
CH55_1605	PF00207	Alpha-2-macroglobulin family
CH55_1605	PF01835	MG2 domain
CH55_1605	PF07703	Alpha-2-macroglobulin family N-terminal region
CH55_1605	PF11974	Alpha-2-macroglobulin MG1 domain
CH55_1606	PF01797	Transposase IS200 like
CH55_1607	PF01797	Transposase IS200 like
CH55_1609	PF00905	Penicillin binding protein transpeptidase domain
CH55_1609	PF00912	Transglycosylase
CH55_1609	PF06832	CH55_1609
CH55_161	PF00872	CH55_161
CH55_1610	PF13693	Winged helix-turn-helix DNA-binding
CH55_1614	PF06836	CH55_1614
CH55_1615	PF06836	CH55_1615
CH55_1616	PF05638	Protein of unknown function (DUF796)
CH55_1619	PF03212	Pertactin
CH55_1619	PF03797	Autotransporter beta-domain
CH55_162	PF06183	DinI-like family
CH55_1620	PF11459	CH55_1620
CH55_1620	PF17194	CH55_1620
CH55_1622	PF00872	CH55_1622
CH55_1623	PF09925	CH55_1623
CH55_1623	PF14351	CH55_1623
CH55_1624	PF14345	CH55_1624
CH55_1625	PF00933	Glycosyl hydrolase family 3 N terminal domain
CH55_1625	PF01915	Glycosyl hydrolase family 3 C-terminal domain
CH55_1625	PF14310	Fibronectin type III-like domain
CH55_1627	PF00248	Aldo/keto reductase family
CH55_1628	PF00248	Aldo/keto reductase family
CH55_1629	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_1629	PF03466	LysR substrate binding domain
CH55_163	PF01979	Amidohydrolase family
CH55_1630	PF00665	Integrase core domain
CH55_1630	PF02796	Helix-turn-helix domain of resolvase
CH55_1631	PF01695	IstB-like ATP binding protein
CH55_1632	PF01695	IstB-like ATP binding protein
CH55_1635	PF00782	Dual specificity phosphatase, catalytic domain
CH55_1635	PF14378	CH55_1635
CH55_1636	PF12146	Putative lysophospholipase
CH55_1636	PF12147	CH55_1636
CH55_1637	PF01553	Acyltransferase
CH55_1638	PF01148	Cytidylyltransferase family
CH55_1639	PF01066	CDP-alcohol phosphatidyltransferase
CH55_164	PF03992	Antibiotic biosynthesis monooxygenase
CH55_1646	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
CH55_1646	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
CH55_1647	PF13275	S4 domain
CH55_1648	PF01797	Transposase IS200 like
CH55_165	PF00872	CH55_165
CH55_1650	PF01406	tRNA synthetases class I (C) catalytic domain
CH55_1650	PF09190	DALR domain
CH55_1651	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
CH55_1652	PF00149	Calcineurin-like phosphoesterase
CH55_1653	PF00731	AIR carboxylase
CH55_1654	PF02222	ATP-grasp domain
CH55_1655	PF02687	CH55_1655
CH55_1656	PF00005	ABC transporter
CH55_1657	PF13472	GDSL-like Lipase/Acylhydrolase family
CH55_1658	PF00106	short chain dehydrogenase
CH55_1659	PF00085	Thioredoxin
CH55_1659	PF14559	Tetratricopeptide repeat
CH55_1659	PF14561	Tetratricopeptide repeat
CH55_166	PF00575	S1 RNA binding domain
CH55_166	PF10150	Ribonuclease E/G family
CH55_166	PF12111	Polyribonucleotide phosphorylase C terminal
CH55_1660	PF01145	SPFH domain / Band 7 family
CH55_1661	PF01957	NfeD-like C-terminal, partner-binding
CH55_1662	PF13411	MerR HTH family regulatory protein
CH55_1663	PF00122	E1-E2 ATPase
CH55_1663	PF00403	Heavy-metal-associated domain
CH55_1663	PF00702	haloacid dehalogenase-like hydrolase
CH55_1664	PF01963	CH55_1664
CH55_1665	PF04073	Aminoacyl-tRNA editing domain
CH55_1668	PF02872	5'-nucleotidase, C-terminal domain
CH55_167	PF00849	RNA pseudouridylate synthase
CH55_167	PF01479	S4 domain
CH55_1670	PF00149	Calcineurin-like phosphoesterase
CH55_1672	PF07690	Major Facilitator Superfamily
CH55_1673	PF00999	Sodium/hydrogen exchanger family
CH55_1673	PF02254	TrkA-N domain
CH55_1674	PF00294	pfkB family carbohydrate kinase
CH55_1675	PF02706	Chain length determinant protein
CH55_1676	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
CH55_1676	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
CH55_1676	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
CH55_1676	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
CH55_1677	PF00535	Glycosyl transferase family 2
CH55_1678	PF00483	Nucleotidyl transferase
CH55_1678	PF01050	Mannose-6-phosphate isomerase
CH55_1679	PF01370	NAD dependent epimerase/dehydratase family
CH55_168	PF02545	Maf-like protein
CH55_1680	PF16363	CH55_1680
CH55_1681	PF16363	CH55_1681
CH55_1682	PF00534	Glycosyl transferases group 1
CH55_1682	PF13439	Glycosyltransferase Family 4
CH55_1685	PF13692	Glycosyl transferases group 1
CH55_1687	PF00535	Glycosyl transferase family 2
CH55_1689	PF13450	NAD(P)-binding Rossmann-like domain
CH55_169	PF02620	CH55_169
CH55_1690	PF01370	NAD dependent epimerase/dehydratase family
CH55_1691	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
CH55_1692	PF16363	CH55_1692
CH55_1693	PF00483	Nucleotidyl transferase
CH55_1694	PF00175	Oxidoreductase NAD-binding domain
CH55_1694	PF00970	Oxidoreductase FAD-binding domain
CH55_1695	PF00111	2Fe-2S iron-sulfur cluster binding domain
CH55_1696	PF00762	Ferrochelatase
CH55_1697	PF00406	Adenylate kinase
CH55_1697	PF05191	Adenylate kinase, active site lid
CH55_1698	PF00183	Hsp90 protein
CH55_1698	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_1699	PF02132	RecR protein
CH55_1699	PF13662	Toprim domain
CH55_17	PF00109	Beta-ketoacyl synthase, N-terminal domain
CH55_17	PF02801	Beta-ketoacyl synthase, C-terminal domain
CH55_170	PF01783	Ribosomal L32p protein family
CH55_1700	PF02575	YbaB/EbfC DNA-binding family
CH55_1701	PF12168	CH55_1701
CH55_1701	PF12169	DNA polymerase III subunits gamma and tau domain III
CH55_1701	PF12170	DNA polymerase III tau subunit V interacting with alpha
CH55_1701	PF13177	DNA polymerase III, delta subunit
CH55_1702	PF00156	Phosphoribosyl transferase domain
CH55_1703	PF04304	CH55_1703
CH55_1704	PF07445	Primosomal replication protein priB and priC
CH55_1705	PF10689	CH55_1705
CH55_1706	PF00924	Mechanosensitive ion channel
CH55_1707	PF12794	CH55_1707
CH55_1707	PF12795	CH55_1707
CH55_1708	PF02635	DsrE/DsrF-like family
CH55_1709	PF00440	Bacterial regulatory proteins, tetR family
CH55_1709	PF08361	MAATS-type transcriptional repressor, C-terminal region
CH55_171	PF02504	Fatty acid synthesis protein
CH55_1710	PF00529	HlyD family secretion protein
CH55_1710	PF16576	CH55_1710
CH55_1711	PF00873	AcrB/AcrD/AcrF family
CH55_1712	PF01197	Ribosomal protein L31
CH55_1713	PF00444	Ribosomal protein L36
CH55_1715	PF10757	CH55_1715
CH55_1716	PF05321	Haemolysin expression modulating protein
CH55_1717	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
CH55_1718	PF09619	Type III secretion system lipoprotein chaperone (YscW)
CH55_1719	PF13622	Thioesterase-like superfamily
CH55_172	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
CH55_172	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
CH55_1720	PF00909	Ammonium Transporter Family
CH55_1721	PF00543	Nitrogen regulatory protein P-II
CH55_1722	PF00005	ABC transporter
CH55_1722	PF00664	ABC transporter transmembrane region
CH55_1723	PF00005	ABC transporter
CH55_1723	PF00664	ABC transporter transmembrane region
CH55_1724	PF01037	AsnC family
CH55_1724	PF13412	Winged helix-turn-helix DNA-binding
CH55_1725	PF00291	Pyridoxal-phosphate dependent enzyme
CH55_1726	PF08282	haloacid dehalogenase-like hydrolase
CH55_1727	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH55_1727	PF12793	CH55_1727
CH55_1728	PF06508	Queuosine biosynthesis protein QueC
CH55_1729	PF13279	Thioesterase-like superfamily
CH55_173	PF00698	Acyl transferase domain
CH55_1730	PF12836	Helix-hairpin-helix motif
CH55_1731	PF13145	PPIC-type PPIASE domain
CH55_1731	PF13624	SurA N-terminal domain
CH55_1732	PF00216	Bacterial DNA-binding protein
CH55_1733	PF00004	ATPase family associated with various cellular activities (AAA)
CH55_1733	PF02190	ATP-dependent protease La (LON) domain
CH55_1733	PF05362	Lon protease (S16) C-terminal proteolytic domain
CH55_1734	PF06689	ClpX C4-type zinc finger
CH55_1734	PF07724	AAA domain (Cdc48 subfamily)
CH55_1734	PF10431	C-terminal, D2-small domain, of ClpB protein
CH55_1735	PF00574	Clp protease
CH55_1736	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
CH55_1736	PF05697	Bacterial trigger factor protein (TF)
CH55_1736	PF05698	Bacterial trigger factor protein (TF) C-terminus
CH55_1738	PF01722	BolA-like protein
CH55_1739	PF03923	CH55_1739
CH55_1739	PF08139	CH55_1739
CH55_174	PF13561	Enoyl-(Acyl carrier protein) reductase
CH55_1740	PF07690	Major Facilitator Superfamily
CH55_1741	PF03502	Nucleoside-specific channel-forming protein, Tsx
CH55_1742	PF06481	COX Aromatic Rich Motif
CH55_1743	PF00115	Cytochrome C and Quinol oxidase polypeptide I
CH55_1744	PF00510	Cytochrome c oxidase subunit III
CH55_1745	PF03626	CH55_1745
CH55_1746	PF01040	UbiA prenyltransferase family
CH55_1747	PF07690	Major Facilitator Superfamily
CH55_1748	PF04461	Protein of unknown function (DUF520)
CH55_1749	PF02558	Ketopantoate reductase PanE/ApbA
CH55_1749	PF08546	Ketopantoate reductase PanE/ApbA C terminal
CH55_175	PF00550	Phosphopantetheine attachment site
CH55_1750	PF01965	DJ-1/PfpI family
CH55_1751	PF02568	Thiamine biosynthesis protein (ThiI)
CH55_1751	PF02926	THUMP domain
CH55_1752	PF02609	Exonuclease VII small subunit
CH55_1753	PF00348	Polyprenyl synthetase
CH55_1754	PF02779	Transketolase, pyrimidine binding domain
CH55_1754	PF02780	Transketolase, C-terminal domain
CH55_1754	PF13292	1-deoxy-D-xylulose-5-phosphate synthase
CH55_1755	PF01797	Transposase IS200 like
CH55_1756	PF04608	Phosphatidylglycerophosphatase A
CH55_1757	PF00586	AIR synthase related protein, N-terminal domain
CH55_1757	PF02769	AIR synthase related protein, C-terminal domain
CH55_1758	PF01029	NusB family
CH55_1759	PF00885	6,7-dimethyl-8-ribityllumazine synthase
CH55_176	PF00109	Beta-ketoacyl synthase, N-terminal domain
CH55_176	PF02801	Beta-ketoacyl synthase, C-terminal domain
CH55_1760	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
CH55_1760	PF01872	RibD C-terminal domain
CH55_1761	PF03477	ATP cone domain
CH55_1764	PF01797	Transposase IS200 like
CH55_1765	PF02355	Protein export membrane protein
CH55_1765	PF07549	SecD/SecF GG Motif
CH55_1766	PF02355	Protein export membrane protein
CH55_1766	PF07549	SecD/SecF GG Motif
CH55_1766	PF13721	SecD export protein N-terminal TM region
CH55_1767	PF02699	Preprotein translocase subunit
CH55_1768	PF01702	Queuine tRNA-ribosyltransferase
CH55_1769	PF02547	Queuosine biosynthesis protein
CH55_177	PF01797	Transposase IS200 like
CH55_1770	PF04336	CH55_1770
CH55_1771	PF00578	AhpC/TSA family
CH55_1771	PF10417	C-terminal domain of 1-Cys peroxiredoxin
CH55_1772	PF01019	Gamma-glutamyltranspeptidase
CH55_1773	PF01019	Gamma-glutamyltranspeptidase
CH55_1774	PF00106	short chain dehydrogenase
CH55_1775	PF00128	Alpha amylase, catalytic domain
CH55_1775	PF02903	Alpha amylase, N-terminal ig-like domain
CH55_1776	PF00324	Amino acid permease
CH55_1777	PF05525	CH55_1777
CH55_1778	PF12849	PBP superfamily domain
CH55_1779	PF00512	His Kinase A (phospho-acceptor) domain
CH55_1779	PF00989	PAS fold
CH55_1779	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_1779	PF11808	CH55_1779
CH55_178	PF01797	Transposase IS200 like
CH55_1780	PF00072	Response regulator receiver domain
CH55_1780	PF00486	Transcriptional regulatory protein, C terminal
CH55_1781	PF00149	Calcineurin-like phosphoesterase
CH55_1781	PF12320	Type 5 capsule protein repressor C-terminal domain
CH55_1782	PF13476	AAA domain
CH55_1782	PF13558	Putative exonuclease SbcCD, C subunit
CH55_1783	PF00480	ROK family
CH55_1784	PF01695	IstB-like ATP binding protein
CH55_1785	PF00665	Integrase core domain
CH55_1785	PF02796	Helix-turn-helix domain of resolvase
CH55_1786	PF04381	Putative exonuclease, RdgC
CH55_1787	PF06865	Protein of unknown function (DUF1255)
CH55_1788	PF01202	Shikimate kinase
CH55_1789	PF00398	Ribosomal RNA adenine dimethylase
CH55_179	PF01063	Aminotransferase class IV
CH55_1790	PF08241	Methyltransferase domain
CH55_1792	PF07238	PilZ domain
CH55_1792	PF07317	Flagellar regulator YcgR
CH55_1793	PF01797	Transposase IS200 like
CH55_1794	PF00171	Aldehyde dehydrogenase family
CH55_1795	PF00696	Amino acid kinase family
CH55_1795	PF01472	PUA domain
CH55_1796	PF07417	Transcriptional regulator Crl
CH55_1797	PF06500	Alpha/beta hydrolase of unknown function (DUF1100)
CH55_1798	PF00156	Phosphoribosyl transferase domain
CH55_1799	PF16083	CH55_1799
CH55_18	PF01177	Asp/Glu/Hydantoin racemase
CH55_180	PF02618	YceG-like family
CH55_1800	PF03067	Chitin binding domain
CH55_1801	PF01797	Transposase IS200 like
CH55_1803	PF01546	Peptidase family M20/M25/M40
CH55_1803	PF07687	Peptidase dimerisation domain
CH55_1804	PF00817	impB/mucB/samB family
CH55_1804	PF11798	IMS family HHH motif
CH55_1804	PF11799	impB/mucB/samB family C-terminal domain
CH55_1805	PF03009	Glycerophosphoryl diester phosphodiesterase family
CH55_1806	PF04400	CH55_1806
CH55_1807	PF02424	ApbE family
CH55_1808	PF00111	2Fe-2S iron-sulfur cluster binding domain
CH55_1808	PF00175	Oxidoreductase NAD-binding domain
CH55_1808	PF00970	Oxidoreductase FAD-binding domain
CH55_1809	PF02508	CH55_1809
CH55_181	PF02223	Thymidylate kinase
CH55_1810	PF02508	CH55_1810
CH55_1811	PF04205	FMN-binding domain
CH55_1812	PF03116	CH55_1812
CH55_1813	PF05896	CH55_1813
CH55_1813	PF11973	CH55_1813
CH55_1814	PF13230	Glutamine amidotransferases class-II
CH55_1815	PF03734	L,D-transpeptidase catalytic domain
CH55_1816	PF13580	SIS domain
CH55_1817	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
CH55_1817	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
CH55_1817	PF09317	CH55_1817
CH55_1818	PF03333	Adhesin biosynthesis transcription regulatory protein
CH55_182	PF09115	DNA polymerase III, delta subunit, C terminal
CH55_182	PF13177	DNA polymerase III, delta subunit
CH55_1820	PF05860	haemagglutination activity domain
CH55_1820	PF13018	CH55_1820
CH55_1821	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
CH55_1821	PF08479	POTRA domain, ShlB-type
CH55_1822	PF01546	Peptidase family M20/M25/M40
CH55_1823	PF00266	Aminotransferase class-V
CH55_1824	PF00005	ABC transporter
CH55_1825	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_1826	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_1827	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH55_1828	PF01380	SIS domain
CH55_1828	PF01418	Helix-turn-helix domain, rpiR family
CH55_1829	PF13318	CH55_1829
CH55_183	PF01026	TatD related DNase
CH55_1830	PF01425	Amidase
CH55_1831	PF11533	Protein of unknown function (DUF3225)
CH55_1832	PF07690	Major Facilitator Superfamily
CH55_1833	PF03591	CH55_1833
CH55_1834	PF05437	CH55_1834
CH55_1835	PF01047	MarR family
CH55_1836	PF00529	HlyD family secretion protein
CH55_1836	PF16576	CH55_1836
CH55_1837	PF07690	Major Facilitator Superfamily
CH55_1838	PF00588	SpoU rRNA Methylase family
CH55_1838	PF08032	RNA 2'-O ribose methyltransferase substrate binding
CH55_1839	PF00085	Thioredoxin
CH55_184	PF00367	phosphotransferase system, EIIB
CH55_184	PF02378	Phosphotransferase system, EIIC
CH55_1840	PF03942	CH55_1840
CH55_1841	PF00583	Acetyltransferase (GNAT) family
CH55_1841	PF13380	CoA binding domain
CH55_1841	PF13549	ATP-grasp domain
CH55_1841	PF13607	Succinyl-CoA ligase like flavodoxin domain
CH55_1842	PF13091	PLD-like domain
CH55_1843	PF10043	CH55_1843
CH55_1849	PF00004	ATPase family associated with various cellular activities (AAA)
CH55_1849	PF02861	Clp amino terminal domain
CH55_1849	PF07724	AAA domain (Cdc48 subfamily)
CH55_1849	PF10431	C-terminal, D2-small domain, of ClpB protein
CH55_185	PF01797	Transposase IS200 like
CH55_1850	PF02578	Multi-copper polyphenol oxidoreductase laccase
CH55_1851	PF00849	RNA pseudouridylate synthase
CH55_1851	PF01479	S4 domain
CH55_1852	PF13525	Outer membrane lipoprotein
CH55_1853	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
CH55_1854	PF01797	Transposase IS200 like
CH55_1855	PF00800	Prephenate dehydratase
CH55_1855	PF01817	Chorismate mutase type II
CH55_1856	PF00665	Integrase core domain
CH55_1856	PF02796	Helix-turn-helix domain of resolvase
CH55_1857	PF01695	IstB-like ATP binding protein
CH55_1858	PF00800	Prephenate dehydratase
CH55_1859	PF01817	Chorismate mutase type II
CH55_1859	PF02153	Prephenate dehydrogenase
CH55_186	PF08501	Shikimate dehydrogenase substrate binding domain
CH55_1860	PF00793	DAHP synthetase I family
CH55_1861	PF00072	Response regulator receiver domain
CH55_1861	PF04397	LytTr DNA-binding domain
CH55_1862	PF03605	CH55_1862
CH55_1863	PF03605	CH55_1863
CH55_1864	PF03605	CH55_1864
CH55_1865	PF04338	Protein of unknown function, DUF481
CH55_1866	PF01797	Transposase IS200 like
CH55_1867	PF01797	Transposase IS200 like
CH55_1868	PF01245	Ribosomal protein L19
CH55_1869	PF01746	tRNA (Guanine-1)-methyltransferase
CH55_1870	PF01782	RimM N-terminal domain
CH55_1870	PF05239	PRC-barrel domain
CH55_1871	PF00886	Ribosomal protein S16
CH55_1872	PF00448	SRP54-type protein, GTPase domain
CH55_1872	PF02881	SRP54-type protein, helical bundle domain
CH55_1872	PF02978	Signal peptide binding domain
CH55_1873	PF01578	CH55_1873
CH55_1874	PF00571	CBS domain
CH55_1874	PF01595	CH55_1874
CH55_1874	PF03471	Transporter associated domain
CH55_1875	PF01797	Transposase IS200 like
CH55_1876	PF02664	S-Ribosylhomocysteinase (LuxS)
CH55_1877	PF04262	Glutamate-cysteine ligase
CH55_1879	PF13419	Haloacid dehalogenase-like hydrolase
CH55_188	PF01230	HIT domain
CH55_1884	PF02599	Global regulator protein family
CH55_1885	PF01411	tRNA synthetases class II (A)
CH55_1885	PF02272	DHHA1 domain
CH55_1885	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
CH55_1886	PF02631	RecX family
CH55_1887	PF00154	recA bacterial DNA recombination protein
CH55_1888	PF02464	Competence-damaged protein
CH55_1889	PF07690	Major Facilitator Superfamily
CH55_189	PF07233	Protein of unknown function (DUF1425)
CH55_1890	PF01047	MarR family
CH55_1890	PF04198	Putative sugar-binding domain
CH55_1891	PF02952	L-fucose isomerase, C-terminal domain
CH55_1892	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
CH55_1892	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
CH55_1893	PF02779	Transketolase, pyrimidine binding domain
CH55_1893	PF02780	Transketolase, C-terminal domain
CH55_1894	PF00456	Transketolase, thiamine diphosphate binding domain
CH55_1895	PF02653	CH55_1895
CH55_1896	PF00005	ABC transporter
CH55_1897	PF10054	Predicted periplasmic lipoprotein (DUF2291)
CH55_1898	PF13407	Periplasmic binding protein domain
CH55_1899	PF00141	Peroxidase
CH55_19	PF00419	Fimbrial protein
CH55_190	PF13036	Protein of unknown function (DUF3897)
CH55_1900	PF07361	Cytochrome b562
CH55_1901	PF01292	Prokaryotic cytochrome b561
CH55_1902	PF02613	Nitrate reductase delta subunit
CH55_1903	PF04976	CH55_1903
CH55_1904	PF12800	4Fe-4S binding domain
CH55_1904	PF13247	4Fe-4S dicluster domain
CH55_1905	PF00384	Molybdopterin oxidoreductase
CH55_1905	PF01568	Molydopterin dinucleotide binding domain
CH55_1905	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
CH55_1906	PF00596	Class II Aldolase and Adducin N-terminal domain
CH55_1907	PF00455	CH55_1907
CH55_1907	PF08220	DeoR-like helix-turn-helix domain
CH55_1908	PF13407	Periplasmic binding protein domain
CH55_1909	PF01797	Transposase IS200 like
CH55_191	PF01636	Phosphotransferase enzyme family
CH55_1910	PF00005	ABC transporter
CH55_1911	PF02653	CH55_1911
CH55_1912	PF02653	CH55_1912
CH55_1913	PF01261	Xylose isomerase-like TIM barrel
CH55_1914	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
CH55_1914	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
CH55_1915	PF05681	CH55_1915
CH55_1915	PF05683	Fumarase C-terminus
CH55_1916	PF11903	CH55_1916
CH55_1917	PF00557	Metallopeptidase family M24
CH55_1918	PF07906	CH55_1918
CH55_1919	PF00593	TonB dependent receptor
CH55_1919	PF07715	TonB-dependent Receptor Plug Domain
CH55_192	PF00933	Glycosyl hydrolase family 3 N terminal domain
CH55_1921	PF00034	Cytochrome c
CH55_1921	PF03150	Di-haem cytochrome c peroxidase
CH55_1921	PF14376	CH55_1921
CH55_1922	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH55_1924	PF04703	FaeA-like protein
CH55_1925	PF01022	Bacterial regulatory protein, arsR family
CH55_1926	PF02040	CH55_1926
CH55_1927	PF04198	Putative sugar-binding domain
CH55_1927	PF13518	Helix-turn-helix domain
CH55_1928	PF02734	DAK2 domain
CH55_1929	PF02733	Dak1 domain
CH55_193	PF05728	Uncharacterised protein family (UPF0227)
CH55_1930	PF13561	Enoyl-(Acyl carrier protein) reductase
CH55_1931	PF00107	Zinc-binding dehydrogenase
CH55_1931	PF08240	Alcohol dehydrogenase GroES-like domain
CH55_1932	PF02502	Ribose/Galactose Isomerase
CH55_1933	PF00488	MutS domain V
CH55_1933	PF01624	MutS domain I
CH55_1933	PF05188	MutS domain II
CH55_1933	PF05190	MutS family domain IV
CH55_1933	PF05192	MutS domain III
CH55_1934	PF00140	Sigma-70 factor, region 1
CH55_1934	PF04539	Sigma-70 region 3
CH55_1934	PF04542	Sigma-70 region 2
CH55_1934	PF04545	Sigma-70, region 4
CH55_1935	PF01476	LysM domain
CH55_1935	PF01551	Peptidase family M23
CH55_1936	PF01135	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
CH55_1937	PF01975	Survival protein SurE
CH55_1938	PF01142	tRNA pseudouridine synthase D (TruD)
CH55_1939	PF02542	YgbB family
CH55_194	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH55_1940	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
CH55_1941	PF04977	Septum formation initiator
CH55_1942	PF12084	CH55_1942
CH55_1943	PF01583	Adenylylsulphate kinase
CH55_1944	PF00009	Elongation factor Tu GTP binding domain
CH55_1945	PF01507	Phosphoadenosine phosphosulfate reductase family
CH55_1946	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
CH55_1946	PF10414	Sirohaem synthase dimerisation region
CH55_1946	PF13241	Putative NAD(P)-binding
CH55_1946	PF14824	Sirohaem biosynthesis protein central
CH55_1948	PF07927	YcfA-like protein
CH55_1949	PF15919	CH55_1949
CH55_1950	PF01507	Phosphoadenosine phosphosulfate reductase family
CH55_1951	PF01507	Phosphoadenosine phosphosulfate reductase family
CH55_1952	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
CH55_1952	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
CH55_1953	PF00175	Oxidoreductase NAD-binding domain
CH55_1953	PF00258	Flavodoxin
CH55_1953	PF00667	FAD binding domain
CH55_1954	PF01242	6-pyruvoyl tetrahydropterin synthase
CH55_1955	PF04055	Radical SAM superfamily
CH55_1955	PF13394	4Fe-4S single cluster domain
CH55_1956	PF00080	Copper/zinc superoxide dismutase (SODC)
CH55_1957	PF00113	Enolase, C-terminal TIM barrel domain
CH55_1957	PF03952	Enolase, N-terminal domain
CH55_1958	PF00117	Glutamine amidotransferase class-I
CH55_1958	PF06418	CTP synthase N-terminus
CH55_1959	PF03819	MazG nucleotide pyrophosphohydrolase domain
CH55_1960	PF02824	TGS domain
CH55_1960	PF04607	Region found in RelA / SpoT proteins
CH55_1960	PF13291	ACT domain
CH55_1960	PF13328	HD domain
CH55_1961	PF00072	Response regulator receiver domain
CH55_1961	PF00512	His Kinase A (phospho-acceptor) domain
CH55_1961	PF01627	Hpt domain
CH55_1961	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_1961	PF09984	CH55_1961
CH55_1962	PF00595	PDZ domain (Also known as DHR or GLGF)
CH55_1962	PF13180	PDZ domain
CH55_1962	PF13365	Trypsin-like peptidase domain
CH55_1963	PF01966	HD domain
CH55_1963	PF13286	Phosphohydrolase-associated domain
CH55_1964	PF01048	Phosphorylase superfamily
CH55_1965	PF01497	Periplasmic binding protein
CH55_1966	PF03458	CH55_1966
CH55_1967	PF01521	Iron-sulphur cluster biosynthesis
CH55_1968	PF00654	Voltage gated chloride channel
CH55_1969	PF00202	Aminotransferase class-III
CH55_197	PF00872	CH55_197
CH55_1970	PF01032	FecCD transport family
CH55_1971	PF01497	Periplasmic binding protein
CH55_1972	PF00005	ABC transporter
CH55_1973	PF00905	Penicillin binding protein transpeptidase domain
CH55_1973	PF00912	Transglycosylase
CH55_1973	PF14812	CH55_1973
CH55_1973	PF14814	Bifunctional transglycosylase second domain
CH55_1974	PF00270	DEAD/DEAH box helicase
CH55_1974	PF00271	Helicase conserved C-terminal domain
CH55_1974	PF04408	Helicase associated domain (HA2)
CH55_1974	PF08482	CH55_1974
CH55_1975	PF13563	2'-5' RNA ligase superfamily
CH55_1976	PF03749	Sugar fermentation stimulation protein
CH55_1977	PF01258	Prokaryotic dksA/traR C4-type zinc finger
CH55_1978	PF00749	tRNA synthetases class I (E and Q), catalytic domain
CH55_1979	PF01743	Poly A polymerase head domain
CH55_1979	PF12626	Polymerase A arginine-rich C-terminus
CH55_1979	PF12627	Probable RNA and SrmB- binding site of polymerase A
CH55_198	PF00872	CH55_198
CH55_1980	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
CH55_1981	PF02548	Ketopantoate hydroxymethyltransferase
CH55_1982	PF02569	Pantoate-beta-alanine ligase
CH55_1983	PF02261	Aspartate decarboxylase
CH55_1984	PF01522	Polysaccharide deacetylase
CH55_1986	PF01061	CH55_1986
CH55_1987	PF00005	ABC transporter
CH55_1988	PF00484	Carbonic anhydrase
CH55_1989	PF00156	Phosphoribosyl transferase domain
CH55_199	PF05433	CH55_199
CH55_1990	PF00394	Multicopper oxidase
CH55_1990	PF07731	Multicopper oxidase
CH55_1990	PF07732	Multicopper oxidase
CH55_1990	PF10518	TAT (twin-arginine translocation) pathway signal sequence
CH55_1991	PF09691	Bacterial chaperone lipoprotein (PulS_OutS)
CH55_1992	PF01564	Spermine/spermidine synthase
CH55_1992	PF17284	CH55_1992
CH55_1993	PF02675	S-adenosylmethionine decarboxylase
CH55_1995	PF06062	CH55_1995
CH55_1996	PF00330	Aconitase family (aconitate hydratase)
CH55_1996	PF06434	Aconitate hydratase 2 N-terminus
CH55_1996	PF11791	Aconitate B N-terminal domain
CH55_1997	PF01797	Transposase IS200 like
CH55_1998	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
CH55_1998	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH55_1999	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
CH55_1999	PF00364	Biotin-requiring enzyme
CH55_1999	PF02817	e3 binding domain
CH55_2	PF14559	Tetratricopeptide repeat
CH55_200	PF00270	DEAD/DEAH box helicase
CH55_200	PF00271	Helicase conserved C-terminal domain
CH55_200	PF02559	CarD-like/TRCF domain
CH55_200	PF03461	TRCF domain
CH55_2000	PF00456	Transketolase, thiamine diphosphate binding domain
CH55_2001	PF00392	Bacterial regulatory proteins, gntR family
CH55_2001	PF07729	FCD domain
CH55_2002	PF00324	Amino acid permease
CH55_2003	PF17113	CH55_2003
CH55_2004	PF17113	CH55_2004
CH55_2005	PF01510	N-acetylmuramoyl-L-alanine amidase
CH55_2006	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
CH55_2006	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
CH55_2007	PF07963	Prokaryotic N-terminal methylation motif
CH55_2008	PF00437	Type II/IV secretion system protein
CH55_2009	PF00482	Type II secretion system (T2SS), protein F
CH55_201	PF02687	CH55_201
CH55_201	PF12704	MacB-like periplasmic core domain
CH55_2010	PF00478	IMP dehydrogenase / GMP reductase domain
CH55_2011	PF01121	Dephospho-CoA kinase
CH55_2012	PF07072	Protein of unknown function (DUF1342)
CH55_2013	PF03884	Domain of unknown function (DUF329)
CH55_2014	PF01797	Transposase IS200 like
CH55_2015	PF00665	Integrase core domain
CH55_2015	PF02796	Helix-turn-helix domain of resolvase
CH55_2016	PF01695	IstB-like ATP binding protein
CH55_2017	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_2018	PF03235	CH55_2018
CH55_2018	PF07510	CH55_2018
CH55_2019	PF00589	Phage integrase family
CH55_2019	PF13356	Domain of unknown function (DUF4102)
CH55_202	PF00005	ABC transporter
CH55_2021	PF03739	CH55_2021
CH55_2022	PF03739	CH55_2022
CH55_2023	PF00883	Cytosol aminopeptidase family, catalytic domain
CH55_2023	PF02789	Cytosol aminopeptidase family, N-terminal domain
CH55_2024	PF04364	DNA polymerase III chi subunit, HolC
CH55_2025	PF00133	tRNA synthetases class I (I, L, M and V)
CH55_2025	PF08264	Anticodon-binding domain of tRNA
CH55_2025	PF10458	Valyl tRNA synthetase tRNA binding arm
CH55_2026	PF00583	Acetyltransferase (GNAT) family
CH55_2027	PF06877	Regulator of ribonuclease activity B
CH55_2028	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
CH55_2028	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
CH55_2029	PF04074	Domain of unknown function (DUF386)
CH55_203	PF02687	CH55_203
CH55_203	PF12704	MacB-like periplasmic core domain
CH55_2030	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH55_2032	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_2033	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_2033	PF12911	CH55_2033
CH55_2034	PF00005	ABC transporter
CH55_2035	PF00005	ABC transporter
CH55_2036	PF03477	ATP cone domain
CH55_2036	PF13597	Anaerobic ribonucleoside-triphosphate reductase
CH55_2037	PF13353	4Fe-4S single cluster domain
CH55_2039	PF00392	Bacterial regulatory proteins, gntR family
CH55_2039	PF07702	UTRA domain
CH55_204	PF00480	ROK family
CH55_2040	PF06754	CH55_2040
CH55_2041	PF05845	Bacterial phosphonate metabolism protein (PhnH)
CH55_2042	PF05845	Bacterial phosphonate metabolism protein (PhnH)
CH55_2043	PF05861	CH55_2043
CH55_2044	PF06007	CH55_2044
CH55_2045	PF00005	ABC transporter
CH55_2046	PF00005	ABC transporter
CH55_2047	PF07969	Amidohydrolase family
CH55_2048	PF13238	AAA domain
CH55_2049	PF12706	Beta-lactamase superfamily domain
CH55_205	PF02146	Sir2 family
CH55_2052	PF05426	Alginate lyase
CH55_2053	PF00005	ABC transporter
CH55_2053	PF08402	TOBE domain
CH55_2054	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_2055	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_2056	PF01547	Bacterial extracellular solute-binding protein
CH55_2057	PF05426	Alginate lyase
CH55_2058	PF05426	Alginate lyase
CH55_2058	PF07940	Heparinase II/III-like protein
CH55_2059	PF01541	GIY-YIG catalytic domain
CH55_206	PF01546	Peptidase family M20/M25/M40
CH55_206	PF07687	Peptidase dimerisation domain
CH55_2060	PF00583	Acetyltransferase (GNAT) family
CH55_2061	PF02036	SCP-2 sterol transfer family
CH55_2062	PF01136	CH55_2062
CH55_2063	PF01136	CH55_2063
CH55_2064	PF02321	Outer membrane efflux protein
CH55_2065	PF00873	AcrB/AcrD/AcrF family
CH55_2066	PF00529	HlyD family secretion protein
CH55_2067	PF13533	Biotin-lipoyl like
CH55_2068	PF00296	Luciferase-like monooxygenase
CH55_207	PF08007	Cupin superfamily protein
CH55_2071	PF01381	Helix-turn-helix
CH55_2072	PF05973	CH55_2072
CH55_2073	PF00270	DEAD/DEAH box helicase
CH55_2073	PF00271	Helicase conserved C-terminal domain
CH55_2073	PF03880	DbpA RNA binding domain
CH55_2073	PF12343	CH55_2073
CH55_2074	PF07719	Tetratricopeptide repeat
CH55_2074	PF13181	Tetratricopeptide repeat
CH55_2075	PF00013	KH domain
CH55_2075	PF00575	S1 RNA binding domain
CH55_2075	PF01138	3' exoribonuclease family, domain 1
CH55_2075	PF03725	3' exoribonuclease family, domain 2
CH55_2075	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
CH55_2076	PF00665	Integrase core domain
CH55_2076	PF13276	CH55_2076
CH55_2077	PF13518	Helix-turn-helix domain
CH55_2078	PF00669	Bacterial flagellin N-terminal helical region
CH55_2078	PF00700	Bacterial flagellin C-terminal helical region
CH55_2079	PF00486	Transcriptional regulatory protein, C terminal
CH55_208	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_208	PF08918	PhoQ Sensor
CH55_2082	PF00669	Bacterial flagellin N-terminal helical region
CH55_2083	PF00460	Flagella basal body rod protein
CH55_2083	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH55_2084	PF10135	CH55_2084
CH55_2085	PF02119	CH55_2085
CH55_2086	PF02107	CH55_2086
CH55_2087	PF00460	Flagella basal body rod protein
CH55_2087	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH55_2088	PF00460	Flagella basal body rod protein
CH55_2088	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH55_2089	PF00460	Flagella basal body rod protein
CH55_2089	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH55_2089	PF07559	Flagellar basal body protein FlaE
CH55_209	PF00072	Response regulator receiver domain
CH55_209	PF00486	Transcriptional regulatory protein, C terminal
CH55_2090	PF03963	CH55_2090
CH55_2090	PF13860	FlgD Ig-like domain
CH55_2090	PF13861	FlgD Tudor-like domain
CH55_2091	PF00460	Flagella basal body rod protein
CH55_2091	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH55_2092	PF00460	Flagella basal body rod protein
CH55_2093	PF13144	SAF-like
CH55_2094	PF04316	Anti-sigma-28 factor, FlgM
CH55_2095	PF05130	FlgN protein
CH55_2096	PF02050	Flagellar FliJ protein
CH55_2097	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CH55_2098	PF02108	CH55_2098
CH55_2098	PF09811	CH55_2098
CH55_2099	PF01706	FliG C-terminal domain
CH55_2099	PF14841	FliG middle domain
CH55_2099	PF14842	FliG N-terminal domain
CH55_21	PF00892	EamA-like transporter family
CH55_210	PF13505	Outer membrane protein beta-barrel domain
CH55_2100	PF01514	Secretory protein of YscJ/FliF family
CH55_2100	PF08345	CH55_2100
CH55_2101	PF02049	CH55_2101
CH55_2102	PF00158	Sigma-54 interaction domain
CH55_2102	PF02954	Bacterial regulatory protein, Fis family
CH55_2103	PF01052	Surface presentation of antigens (SPOA)
CH55_2104	PF01052	Surface presentation of antigens (SPOA)
CH55_2105	PF00813	CH55_2105
CH55_2106	PF01313	CH55_2106
CH55_2107	PF01311	CH55_2107
CH55_2108	PF01312	FlhB HrpN YscU SpaS Family
CH55_2109	PF00771	FHIPEP family
CH55_211	PF00206	Lyase
CH55_211	PF08328	Adenylosuccinate lyase C-terminal
CH55_2110	PF11153	CH55_2110
CH55_2112	PF01497	Periplasmic binding protein
CH55_2113	PF00419	Fimbrial protein
CH55_2114	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH55_2114	PF02753	Pili assembly chaperone PapD, C-terminal domain
CH55_2115	PF00577	Outer membrane usher protein
CH55_2115	PF13953	PapC C-terminal domain
CH55_2115	PF13954	PapC N-terminal domain
CH55_2116	PF01797	Transposase IS200 like
CH55_2117	PF01478	Type IV leader peptidase family
CH55_2119	PF13629	CH55_2119
CH55_212	PF04356	Protein of unknown function (DUF489)
CH55_2120	PF00263	CH55_2120
CH55_2123	PF00437	Type II/IV secretion system protein
CH55_2124	PF00482	Type II secretion system (T2SS), protein F
CH55_2125	PF00482	Type II secretion system (T2SS), protein F
CH55_2127	PF07811	CH55_2127
CH55_2128	PF16964	CH55_2128
CH55_213	PF03054	tRNA methyl transferase
CH55_2130	PF02472	Biopolymer transport protein ExbD/TolR
CH55_2132	PF01618	CH55_2132
CH55_2133	PF01053	Cys/Met metabolism PLP-dependent enzyme
CH55_2134	PF09335	CH55_2134
CH55_2135	PF06719	CH55_2135
CH55_2135	PF12833	Helix-turn-helix domain
CH55_2136	PF00465	Iron-containing alcohol dehydrogenase
CH55_2137	PF00248	Aldo/keto reductase family
CH55_2138	PF11842	CH55_2138
CH55_2139	PF04055	Radical SAM superfamily
CH55_2139	PF08497	CH55_2139
CH55_214	PF00293	NUDIX domain
CH55_2140	PF07731	Multicopper oxidase
CH55_2140	PF07732	Multicopper oxidase
CH55_2141	PF01553	Acyltransferase
CH55_2142	PF00521	DNA gyrase/topoisomerase IV, subunit A
CH55_2142	PF03989	DNA gyrase C-terminal domain, beta-propeller
CH55_2143	PF02525	Flavodoxin-like fold
CH55_2144	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_2144	PF03466	LysR substrate binding domain
CH55_2145	PF00204	DNA gyrase B
CH55_2145	PF00986	DNA gyrase B subunit, carboxyl terminus
CH55_2145	PF01751	Toprim domain
CH55_2145	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_2146	PF05728	Uncharacterised protein family (UPF0227)
CH55_2147	PF00149	Calcineurin-like phosphoesterase
CH55_2148	PF06853	CH55_2148
CH55_2149	PF00293	NUDIX domain
CH55_215	PF00849	RNA pseudouridylate synthase
CH55_2150	PF02321	Outer membrane efflux protein
CH55_2152	PF06693	CH55_2152
CH55_2153	PF03738	Glutathionylspermidine synthase preATP-grasp
CH55_2154	PF02900	Catalytic LigB subunit of aromatic ring-opening dioxygenase
CH55_2155	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
CH55_2157	PF04380	CH55_2157
CH55_2158	PF13520	Amino acid permease
CH55_2159	PF00294	pfkB family carbohydrate kinase
CH55_2159	PF01467	Cytidylyltransferase
CH55_216	PF00180	Isocitrate/isopropylmalate dehydrogenase
CH55_2160	PF03710	Glutamate-ammonia ligase adenylyltransferase
CH55_2160	PF08335	GlnD PII-uridylyltransferase
CH55_2161	PF01928	CYTH domain
CH55_2162	PF08239	Bacterial SH3 domain
CH55_2163	PF01743	Poly A polymerase head domain
CH55_2163	PF01966	HD domain
CH55_2163	PF12627	Probable RNA and SrmB- binding site of polymerase A
CH55_2164	PF02673	CH55_2164
CH55_2165	PF02152	Dihydroneopterin aldolase
CH55_2166	PF02660	CH55_2166
CH55_2167	PF00814	Glycoprotease family
CH55_2168	PF01165	Ribosomal protein S21
CH55_2169	PF01807	CHC2 zinc finger
CH55_2169	PF08275	DNA primase catalytic core, N-terminal domain
CH55_2169	PF08278	DNA primase DnaG DnaB-binding
CH55_2169	PF10410	DnaB-helicase binding domain of primase
CH55_2169	PF13155	Toprim-like
CH55_217	PF00356	Bacterial regulatory proteins, lacI family
CH55_217	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
CH55_2170	PF00140	Sigma-70 factor, region 1
CH55_2170	PF03979	Sigma-70 factor, region 1
CH55_2170	PF04539	Sigma-70 region 3
CH55_2170	PF04542	Sigma-70 region 2
CH55_2170	PF04545	Sigma-70, region 4
CH55_2170	PF04546	Sigma-70, non-essential region
CH55_2173	PF03592	Terminase small subunit
CH55_2178	PF02661	Fic/DOC family
CH55_2181	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_2181	PF03466	LysR substrate binding domain
CH55_2183	PF08803	Putative mono-oxygenase ydhR
CH55_2184	PF01042	Endoribonuclease L-PSP
CH55_2185	PF01042	Endoribonuclease L-PSP
CH55_2186	PF08348	CH55_2186
CH55_2187	PF10604	Polyketide cyclase / dehydrase and lipid transport
CH55_2189	PF03553	CH55_2189
CH55_219	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CH55_219	PF08447	PAS fold
CH55_2190	PF00155	Aminotransferase class I and II
CH55_2192	PF17090	CH55_2192
CH55_2193	PF13437	HlyD family secretion protein
CH55_2193	PF13533	Biotin-lipoyl like
CH55_2194	PF04632	CH55_2194
CH55_2195	PF02321	Outer membrane efflux protein
CH55_2196	PF00933	Glycosyl hydrolase family 3 N terminal domain
CH55_2196	PF01915	Glycosyl hydrolase family 3 C-terminal domain
CH55_2196	PF14310	Fibronectin type III-like domain
CH55_2198	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_2199	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_22	PF02311	AraC-like ligand binding domain
CH55_22	PF12833	Helix-turn-helix domain
CH55_220	PF05368	NmrA-like family
CH55_2200	PF01547	Bacterial extracellular solute-binding protein
CH55_2201	PF00356	Bacterial regulatory proteins, lacI family
CH55_2201	PF13377	Periplasmic binding protein-like domain
CH55_2203	PF00005	ABC transporter
CH55_2203	PF08402	TOBE domain
CH55_2204	PF10091	Putative glucoamylase
CH55_2205	PF13557	CH55_2205
CH55_2206	PF03797	Autotransporter beta-domain
CH55_2208	PF15599	CH55_2208
CH55_221	PF01638	HxlR-like helix-turn-helix
CH55_2212	PF04829	CH55_2212
CH55_2212	PF13332	CH55_2212
CH55_2213	PF05594	CH55_2213
CH55_2213	PF05860	haemagglutination activity domain
CH55_2213	PF13018	CH55_2213
CH55_2214	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
CH55_2214	PF08479	POTRA domain, ShlB-type
CH55_2214	PF17287	CH55_2214
CH55_2215	PF00092	von Willebrand factor type A domain
CH55_2216	PF02342	TerD domain
CH55_2217	PF00092	von Willebrand factor type A domain
CH55_2218	PF00092	von Willebrand factor type A domain
CH55_2218	PF15616	CH55_2218
CH55_2219	PF13672	Protein phosphatase 2C
CH55_2220	PF00069	Protein kinase domain
CH55_2221	PF03729	CH55_2221
CH55_2222	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
CH55_2222	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH55_2223	PF05175	Methyltransferase small domain
CH55_2224	PF03212	Pertactin
CH55_2225	PF03797	Autotransporter beta-domain
CH55_2226	PF01863	Protein of unknown function DUF45
CH55_2227	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
CH55_2228	PF00375	Sodium:dicarboxylate symporter family
CH55_223	PF00328	Histidine phosphatase superfamily (branch 2)
CH55_2230	PF01797	Transposase IS200 like
CH55_2231	PF12582	CH55_2231
CH55_2232	PF00149	Calcineurin-like phosphoesterase
CH55_2233	PF04379	Protein of unknown function (DUF525)
CH55_2234	PF00398	Ribosomal RNA adenine dimethylase
CH55_2235	PF04166	Pyridoxal phosphate biosynthetic protein PdxA
CH55_2236	PF00639	PPIC-type PPIASE domain
CH55_2236	PF09312	SurA N-terminal domain
CH55_2237	PF03968	OstA-like protein
CH55_2237	PF04453	Organic solvent tolerance protein
CH55_2238	PF00226	DnaJ domain
CH55_2238	PF05099	Tellurite resistance protein TerB
CH55_2239	PF00849	RNA pseudouridylate synthase
CH55_224	PF14001	CH55_224
CH55_2240	PF10074	CH55_2240
CH55_2241	PF06812	CH55_2241
CH55_2242	PF05591	CH55_2242
CH55_2243	PF05943	CH55_2243
CH55_2244	PF05638	Protein of unknown function (DUF796)
CH55_2245	PF04965	Gene 25-like lysozyme
CH55_2246	PF05947	CH55_2246
CH55_2247	PF06996	CH55_2247
CH55_2248	PF00004	ATPase family associated with various cellular activities (AAA)
CH55_2248	PF02861	Clp amino terminal domain
CH55_2248	PF07724	AAA domain (Cdc48 subfamily)
CH55_2249	PF05954	Phage late control gene D protein (GPD)
CH55_225	PF11004	CH55_225
CH55_2250	PF09937	CH55_2250
CH55_2250	PF13599	Pentapeptide repeats (9 copies)
CH55_2251	PF00805	Pentapeptide repeats (8 copies)
CH55_2251	PF13599	Pentapeptide repeats (9 copies)
CH55_2252	PF12059	CH55_2252
CH55_2253	PF13665	CH55_2253
CH55_2254	PF12790	Type VI secretion lipoprotein
CH55_2255	PF05936	CH55_2255
CH55_2256	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
CH55_2257	PF00691	OmpA family
CH55_2257	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
CH55_2258	PF06744	CH55_2258
CH55_2258	PF06761	CH55_2258
CH55_2258	PF14331	CH55_2258
CH55_226	PF01037	AsnC family
CH55_226	PF13412	Winged helix-turn-helix DNA-binding
CH55_2260	PF00176	SNF2 family N-terminal domain
CH55_2260	PF00271	Helicase conserved C-terminal domain
CH55_2260	PF12137	RNA polymerase recycling family C-terminal
CH55_2261	PF00136	DNA polymerase family B
CH55_2261	PF03104	DNA polymerase family B, exonuclease domain
CH55_2262	PF09335	CH55_2262
CH55_2263	PF00005	ABC transporter
CH55_2264	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_2265	PF13343	Bacterial extracellular solute-binding protein
CH55_2267	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH55_2267	PF12793	CH55_2267
CH55_2268	PF07690	Major Facilitator Superfamily
CH55_2269	PF00694	Aconitase C-terminal domain
CH55_227	PF10777	CH55_227
CH55_2270	PF00330	Aconitase family (aconitate hydratase)
CH55_2271	PF00180	Isocitrate/isopropylmalate dehydrogenase
CH55_2272	PF00682	HMGL-like
CH55_2272	PF08502	LeuA allosteric (dimerisation) domain
CH55_2273	PF01797	Transposase IS200 like
CH55_2274	PF01797	Transposase IS200 like
CH55_2276	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_2276	PF03466	LysR substrate binding domain
CH55_2277	PF00501	AMP-binding enzyme
CH55_2278	PF00205	Thiamine pyrophosphate enzyme, central domain
CH55_2278	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CH55_2278	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
CH55_2279	PF01842	ACT domain
CH55_2279	PF10369	Small subunit of acetolactate synthase
CH55_228	PF00107	Zinc-binding dehydrogenase
CH55_228	PF08240	Alcohol dehydrogenase GroES-like domain
CH55_2280	PF01797	Transposase IS200 like
CH55_2281	PF00356	Bacterial regulatory proteins, lacI family
CH55_2281	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
CH55_2282	PF06610	CH55_2282
CH55_2283	PF02381	MraZ protein
CH55_2284	PF01795	MraW methylase family
CH55_2285	PF04999	CH55_2285
CH55_2286	PF00905	Penicillin binding protein transpeptidase domain
CH55_2286	PF03717	Penicillin-binding Protein dimerisation domain
CH55_2287	PF01225	Mur ligase family, catalytic domain
CH55_2287	PF02875	Mur ligase family, glutamate ligase domain
CH55_2287	PF08245	Mur ligase middle domain
CH55_2288	PF01225	Mur ligase family, catalytic domain
CH55_2288	PF02875	Mur ligase family, glutamate ligase domain
CH55_2288	PF08245	Mur ligase middle domain
CH55_2289	PF00953	Glycosyl transferase family 4
CH55_2289	PF10555	Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
CH55_229	PF00703	Glycosyl hydrolases family 2
CH55_229	PF02836	Glycosyl hydrolases family 2, TIM barrel domain
CH55_229	PF02837	Glycosyl hydrolases family 2, sugar binding domain
CH55_229	PF02929	Beta galactosidase small chain
CH55_229	PF16353	CH55_229
CH55_2290	PF02875	Mur ligase family, glutamate ligase domain
CH55_2290	PF08245	Mur ligase middle domain
CH55_2291	PF01098	CH55_2291
CH55_2292	PF03033	Glycosyltransferase family 28 N-terminal domain
CH55_2292	PF04101	Glycosyltransferase family 28 C-terminal domain
CH55_2293	PF01225	Mur ligase family, catalytic domain
CH55_2293	PF02875	Mur ligase family, glutamate ligase domain
CH55_2293	PF08245	Mur ligase middle domain
CH55_2294	PF01820	D-ala D-ala ligase N-terminus
CH55_2294	PF07478	D-ala D-ala ligase C-terminus
CH55_2295	PF03799	Cell division protein FtsQ
CH55_2295	PF08478	POTRA domain, FtsQ-type
CH55_2296	PF02491	SHS2 domain inserted in FTSA
CH55_2296	PF14450	Cell division protein FtsA
CH55_2297	PF00091	Tubulin/FtsZ family, GTPase domain
CH55_2297	PF12327	FtsZ family, C-terminal domain
CH55_2298	PF03331	UDP-3-O-acyl N-acetylglycosamine deacetylase
CH55_2299	PF05258	CH55_2299
CH55_23	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
CH55_23	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
CH55_23	PF11890	Domain of unknown function (DUF3410)
CH55_230	PF00313	'Cold-shock' DNA-binding domain
CH55_2300	PF06558	CH55_2300
CH55_2301	PF01043	SecA preprotein cross-linking domain
CH55_2301	PF02810	SEC-C motif
CH55_2301	PF07516	SecA Wing and Scaffold domain
CH55_2301	PF07517	SecA DEAD-like domain
CH55_2302	PF00293	NUDIX domain
CH55_2303	PF01695	IstB-like ATP binding protein
CH55_2304	PF00665	Integrase core domain
CH55_2304	PF02796	Helix-turn-helix domain of resolvase
CH55_2306	PF07681	CH55_2306
CH55_2307	PF13997	CH55_2307
CH55_2308	PF07332	CH55_2308
CH55_2309	PF05957	CH55_2309
CH55_231	PF10781	CH55_231
CH55_2310	PF06476	CH55_2310
CH55_2311	PF13721	SecD export protein N-terminal TM region
CH55_2312	PF09335	CH55_2312
CH55_2314	PF00392	Bacterial regulatory proteins, gntR family
CH55_2314	PF07729	FCD domain
CH55_2315	PF07690	Major Facilitator Superfamily
CH55_2316	PF02614	Glucuronate isomerase
CH55_2317	PF01232	Mannitol dehydrogenase Rossmann domain
CH55_2317	PF08125	Mannitol dehydrogenase C-terminal domain
CH55_2318	PF04295	CH55_2318
CH55_2318	PF08666	SAF domain
CH55_2319	PF10688	CH55_2319
CH55_232	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CH55_2320	PF01797	Transposase IS200 like
CH55_2321	PF00186	Dihydrofolate reductase
CH55_2322	PF12821	CH55_2322
CH55_2323	PF06738	CH55_2323
CH55_2324	PF01810	CH55_2324
CH55_2325	PF02142	MGS-like domain
CH55_2325	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
CH55_2325	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CH55_2326	PF00117	Glutamine amidotransferase class-I
CH55_2326	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
CH55_2327	PF01113	Dihydrodipicolinate reductase, N-terminus
CH55_2327	PF05173	Dihydrodipicolinate reductase, C-terminus
CH55_2328	PF01797	Transposase IS200 like
CH55_2329	PF02401	LytB protein
CH55_233	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CH55_233	PF02203	Tar ligand binding domain homologue
CH55_2330	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
CH55_2331	PF01252	CH55_2331
CH55_2332	PF00133	tRNA synthetases class I (I, L, M and V)
CH55_2332	PF06827	Zinc finger found in FPG and IleRS
CH55_2332	PF08264	Anticodon-binding domain of tRNA
CH55_2333	PF01687	Riboflavin kinase
CH55_2333	PF06574	FAD synthetase
CH55_2334	PF01649	Ribosomal protein S20
CH55_2335	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_2335	PF03466	LysR substrate binding domain
CH55_2336	PF06965	Na+/H+ antiporter 1
CH55_2337	PF00226	DnaJ domain
CH55_2337	PF00684	DnaJ central domain
CH55_2337	PF01556	DnaJ C terminal domain
CH55_2338	PF00012	Hsp70 protein
CH55_2339	PF01184	CH55_2339
CH55_234	PF02308	CH55_234
CH55_2341	PF07690	Major Facilitator Superfamily
CH55_2342	PF00994	Probable molybdopterin binding domain
CH55_2343	PF00923	Transaldolase
CH55_2344	PF03883	CH55_2344
CH55_2346	PF00291	Pyridoxal-phosphate dependent enzyme
CH55_2346	PF14821	Threonine synthase N terminus
CH55_2347	PF00288	GHMP kinases N terminal domain
CH55_2347	PF08544	GHMP kinases C terminal
CH55_2348	PF00696	Amino acid kinase family
CH55_2348	PF00742	Homoserine dehydrogenase
CH55_2348	PF01842	ACT domain
CH55_2348	PF03447	Homoserine dehydrogenase, NAD binding domain
CH55_2348	PF13840	ACT domain
CH55_235	PF00122	E1-E2 ATPase
CH55_235	PF00690	Cation transporter/ATPase, N-terminus
CH55_2350	PF00072	Response regulator receiver domain
CH55_2350	PF00486	Transcriptional regulatory protein, C terminal
CH55_2351	PF05981	CH55_2351
CH55_2353	PF00300	Histidine phosphatase superfamily (branch 1)
CH55_2354	PF06445	GyrI-like small molecule binding domain
CH55_2354	PF12833	Helix-turn-helix domain
CH55_2355	PF01371	Trp repressor protein
CH55_2356	PF01931	Protein of unknown function DUF84
CH55_2357	PF01464	Transglycosylase SLT domain
CH55_2357	PF14718	Soluble lytic murein transglycosylase L domain
CH55_2358	PF00122	E1-E2 ATPase
CH55_2358	PF00689	Cation transporting ATPase, C-terminus
CH55_2358	PF00690	Cation transporter/ATPase, N-terminus
CH55_2358	PF00702	haloacid dehalogenase-like hydrolase
CH55_2359	PF13689	CH55_2359
CH55_236	PF00689	Cation transporting ATPase, C-terminus
CH55_236	PF00702	haloacid dehalogenase-like hydrolase
CH55_2360	PF00990	GGDEF domain
CH55_2360	PF17152	CH55_2360
CH55_2361	PF00691	OmpA family
CH55_2362	PF00005	ABC transporter
CH55_2363	PF00005	ABC transporter
CH55_2363	PF12848	ABC transporter
CH55_2364	PF02661	Fic/DOC family
CH55_2364	PF13776	CH55_2364
CH55_2365	PF01381	Helix-turn-helix
CH55_2365	PF13521	AAA domain
CH55_2366	PF13481	AAA domain
CH55_2366	PF13541	Subunit ChlI of Mg-chelatase
CH55_2367	PF12710	haloacid dehalogenase-like hydrolase
CH55_2368	PF10144	CH55_2368
CH55_2369	PF01048	Phosphorylase superfamily
CH55_237	PF05247	Flagellar transcriptional activator (FlhD)
CH55_2370	PF01676	Metalloenzyme superfamily
CH55_2371	PF00591	Glycosyl transferase family, a/b domain
CH55_2371	PF07831	Pyrimidine nucleoside phosphorylase C-terminal domain
CH55_2372	PF00591	Glycosyl transferase family, a/b domain
CH55_2372	PF02885	Glycosyl transferase family, helical bundle domain
CH55_2373	PF01791	DeoC/LacD family aldolase
CH55_2374	PF01773	Na+ dependent nucleoside transporter N-terminus
CH55_2374	PF07662	Na+ dependent nucleoside transporter C-terminus
CH55_2374	PF07670	Nucleoside recognition
CH55_2375	PF01026	TatD related DNase
CH55_2376	PF01026	TatD related DNase
CH55_2377	PF01734	Patatin-like phospholipase
CH55_2378	PF07043	CH55_2378
CH55_2379	PF04972	BON domain
CH55_238	PF05280	Flagellar transcriptional activator (FlhC)
CH55_2380	PF00009	Elongation factor Tu GTP binding domain
CH55_2380	PF03144	Elongation factor Tu domain 2
CH55_2380	PF16658	CH55_2380
CH55_2381	PF00583	Acetyltransferase (GNAT) family
CH55_2382	PF03603	DNA polymerase III psi subunit
CH55_2383	PF05175	Methyltransferase small domain
CH55_2383	PF08468	Methyltransferase small domain N-terminal
CH55_2385	PF07256	CH55_2385
CH55_2386	PF00990	GGDEF domain
CH55_2387	PF01095	Pectinesterase
CH55_2389	PF00873	AcrB/AcrD/AcrF family
CH55_239	PF01618	CH55_239
CH55_2390	PF16576	CH55_2390
CH55_2391	PF06305	CH55_2391
CH55_2392	PF04932	CH55_2392
CH55_2393	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
CH55_2394	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
CH55_2394	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
CH55_2395	PF04198	Putative sugar-binding domain
CH55_2396	PF00325	Bacterial regulatory proteins, crp family
CH55_2397	PF00005	ABC transporter
CH55_2398	PF02653	CH55_2398
CH55_2399	PF02653	CH55_2399
CH55_24	PF01118	Semialdehyde dehydrogenase, NAD binding domain
CH55_24	PF02774	Semialdehyde dehydrogenase, dimerisation domain
CH55_240	PF00691	OmpA family
CH55_240	PF13677	CH55_240
CH55_2400	PF02653	CH55_2400
CH55_2401	PF13407	Periplasmic binding protein domain
CH55_2402	PF01791	DeoC/LacD family aldolase
CH55_2403	PF03992	Antibiotic biosynthesis monooxygenase
CH55_2404	PF10696	CH55_2404
CH55_2405	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
CH55_2405	PF00381	PTS HPr component phosphorylation site
CH55_2405	PF00391	PEP-utilising enzyme, mobile domain
CH55_2405	PF02896	PEP-utilising enzyme, TIM barrel domain
CH55_2405	PF05524	PEP-utilising enzyme, N-terminal
CH55_2406	PF02378	Phosphotransferase system, EIIC
CH55_2407	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
CH55_2408	PF12833	Helix-turn-helix domain
CH55_2409	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
CH55_241	PF01584	CheW-like domain
CH55_241	PF01627	Hpt domain
CH55_241	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_241	PF02895	Signal transducing histidine kinase, homodimeric domain
CH55_241	PF09078	CheY binding
CH55_2411	PF05987	CH55_2411
CH55_2412	PF01435	Peptidase family M48
CH55_2413	PF09983	CH55_2413
CH55_2413	PF11795	CH55_2413
CH55_2414	PF13558	Putative exonuclease SbcCD, C subunit
CH55_2419	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_242	PF01584	CheW-like domain
CH55_2420	PF01555	DNA methylase
CH55_2421	PF01527	Transposase
CH55_2422	PF10117	CH55_2422
CH55_2423	PF07728	AAA domain (dynein-related subfamily)
CH55_2424	PF00665	Integrase core domain
CH55_2424	PF02796	Helix-turn-helix domain of resolvase
CH55_2425	PF01695	IstB-like ATP binding protein
CH55_2426	PF01695	IstB-like ATP binding protein
CH55_2427	PF02580	D-Tyr-tRNA(Tyr) deacylase
CH55_2428	PF03631	CH55_2428
CH55_2429	PF13419	Haloacid dehalogenase-like hydrolase
CH55_243	PF07690	Major Facilitator Superfamily
CH55_2430	PF00009	Elongation factor Tu GTP binding domain
CH55_2430	PF00679	Elongation factor G C-terminus
CH55_2430	PF03144	Elongation factor Tu domain 2
CH55_2431	PF00120	Glutamine synthetase, catalytic domain
CH55_2431	PF03951	Glutamine synthetase, beta-Grasp domain
CH55_2432	PF00512	His Kinase A (phospho-acceptor) domain
CH55_2432	PF00989	PAS fold
CH55_2432	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_2433	PF00072	Response regulator receiver domain
CH55_2433	PF00158	Sigma-54 interaction domain
CH55_2433	PF02954	Bacterial regulatory protein, Fis family
CH55_2434	PF04055	Radical SAM superfamily
CH55_2434	PF06969	HemN C-terminal domain
CH55_2435	PF04220	CH55_2435
CH55_2436	PF01926	50S ribosome-binding GTPase
CH55_2437	PF01797	Transposase IS200 like
CH55_2438	PF01797	Transposase IS200 like
CH55_2439	PF00476	DNA polymerase family A
CH55_2439	PF01367	5'-3' exonuclease, C-terminal SAM fold
CH55_2439	PF01612	3'-5' exonuclease
CH55_2439	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
CH55_244	PF01042	Endoribonuclease L-PSP
CH55_2440	PF01323	DSBA-like thioredoxin domain
CH55_2441	PF01636	Phosphotransferase enzyme family
CH55_2442	PF06288	Protein of unknown function (DUF1040)
CH55_2443	PF12804	MobA-like NTP transferase domain
CH55_2444	PF03205	Molybdopterin guanine dinucleotide synthesis protein B
CH55_2445	PF00872	CH55_2445
CH55_245	PF01261	Xylose isomerase-like TIM barrel
CH55_2451	PF00665	Integrase core domain
CH55_2451	PF02796	Helix-turn-helix domain of resolvase
CH55_2453	PF01695	IstB-like ATP binding protein
CH55_2454	PF01695	IstB-like ATP binding protein
CH55_2455	PF13409	Glutathione S-transferase, N-terminal domain
CH55_2455	PF13410	Glutathione S-transferase, C-terminal domain
CH55_2456	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_2456	PF03466	LysR substrate binding domain
CH55_2457	PF02678	Pirin
CH55_2458	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
CH55_2459	PF04348	LppC putative lipoprotein
CH55_246	PF08348	CH55_246
CH55_246	PF13309	CH55_246
CH55_2460	PF02021	Uncharacterised protein family UPF0102
CH55_2461	PF13580	SIS domain
CH55_2462	PF04972	BON domain
CH55_2463	PF00912	Transglycosylase
CH55_2465	PF00072	Response regulator receiver domain
CH55_2465	PF00512	His Kinase A (phospho-acceptor) domain
CH55_2465	PF00989	PAS fold
CH55_2465	PF01627	Hpt domain
CH55_2465	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_2466	PF04055	Radical SAM superfamily
CH55_2466	PF16199	CH55_2466
CH55_2467	PF00310	Glutamine amidotransferases class-II
CH55_2467	PF01493	GXGXG motif
CH55_2467	PF01645	Conserved region in glutamate synthase
CH55_2467	PF04898	Glutamate synthase central domain
CH55_2468	PF13450	NAD(P)-binding Rossmann-like domain
CH55_2468	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
CH55_2469	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH55_2471	PF04386	Stringent starvation protein B
CH55_2472	PF00043	Glutathione S-transferase, C-terminal domain
CH55_2472	PF02798	Glutathione S-transferase, N-terminal domain
CH55_2473	PF00380	Ribosomal protein S9/S16
CH55_2474	PF00572	Ribosomal protein L13
CH55_2475	PF03969	AFG1-like ATPase
CH55_2477	PF06295	CH55_2477
CH55_2478	PF00595	PDZ domain (Also known as DHR or GLGF)
CH55_2478	PF13180	PDZ domain
CH55_2478	PF13365	Trypsin-like peptidase domain
CH55_2479	PF01797	Transposase IS200 like
CH55_248	PF03797	Autotransporter beta-domain
CH55_2480	PF13180	PDZ domain
CH55_2480	PF13365	Trypsin-like peptidase domain
CH55_2481	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
CH55_2482	PF01722	BolA-like protein
CH55_2483	PF13466	STAS domain
CH55_2484	PF05494	Toluene tolerance, Ttg2
CH55_2485	PF02470	CH55_2485
CH55_2486	PF02405	CH55_2486
CH55_2487	PF00005	ABC transporter
CH55_2488	PF01699	Sodium/calcium exchanger protein
CH55_2489	PF00571	CBS domain
CH55_2489	PF01380	SIS domain
CH55_249	PF10101	CH55_249
CH55_2490	PF08282	haloacid dehalogenase-like hydrolase
CH55_2491	PF06835	Lipopolysaccharide-assembly, LptC-related
CH55_2492	PF03968	OstA-like protein
CH55_2493	PF00005	ABC transporter
CH55_2493	PF12399	Branched-chain amino acid ATP-binding cassette transporter
CH55_2494	PF00309	CH55_2494
CH55_2494	PF04552	Sigma-54, DNA binding domain
CH55_2494	PF04963	Sigma-54 factor, core binding domain
CH55_2495	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
CH55_2496	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
CH55_2497	PF03668	CH55_2497
CH55_2498	PF00381	PTS HPr component phosphorylation site
CH55_2499	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
CH55_2499	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
CH55_25	PF01416	tRNA pseudouridine synthase
CH55_2500	PF01948	Aspartate carbamoyltransferase regulatory chain, allosteric domain
CH55_2500	PF02748	Aspartate carbamoyltransferase regulatory chain, metal binding domain
CH55_2501	PF01042	Endoribonuclease L-PSP
CH55_2502	PF16743	CH55_2502
CH55_2503	PF00356	Bacterial regulatory proteins, lacI family
CH55_2503	PF13377	Periplasmic binding protein-like domain
CH55_2504	PF00367	phosphotransferase system, EIIB
CH55_2504	PF02378	Phosphotransferase system, EIIC
CH55_2505	PF00128	Alpha amylase, catalytic domain
CH55_2505	PF11941	Domain of unknown function (DUF3459)
CH55_2506	PF01272	Transcription elongation factor, GreA/GreB, C-term
CH55_2506	PF14760	Rnk N-terminus
CH55_2507	PF07361	Cytochrome b562
CH55_2509	PF01523	Putative modulator of DNA gyrase
CH55_251	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CH55_251	PF00672	HAMP domain
CH55_251	PF02203	Tar ligand binding domain homologue
CH55_2510	PF04751	Protein of unknown function (DUF615)
CH55_2511	PF01337	Barstar (barnase inhibitor)
CH55_2512	PF00545	ribonuclease
CH55_2513	PF00171	Aldehyde dehydrogenase family
CH55_2514	PF00171	Aldehyde dehydrogenase family
CH55_2515	PF04632	CH55_2515
CH55_2516	PF13437	HlyD family secretion protein
CH55_2516	PF13533	Biotin-lipoyl like
CH55_2517	PF07869	CH55_2517
CH55_2518	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_2518	PF03466	LysR substrate binding domain
CH55_2519	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_252	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CH55_252	PF00672	HAMP domain
CH55_252	PF02203	Tar ligand binding domain homologue
CH55_2520	PF03538	Salmonella virulence plasmid 28
CH55_2522	PF03534	Salmonella virulence plasmid 65kDa B protein
CH55_2522	PF12255	Insecticide toxin TcdB middle/C-terminal region
CH55_2522	PF12256	Insecticide toxin TcdB middle/N-terminal region
CH55_2523	PF16083	CH55_2523
CH55_2524	PF13539	D-alanyl-D-alanine carboxypeptidase
CH55_2525	PF10828	CH55_2525
CH55_2526	PF00782	Dual specificity phosphatase, catalytic domain
CH55_2529	PF01523	Putative modulator of DNA gyrase
CH55_253	PF01739	CheR methyltransferase, SAM binding domain
CH55_253	PF03705	CheR methyltransferase, all-alpha domain
CH55_2530	PF00795	Carbon-nitrogen hydrolase
CH55_2531	PF13116	CH55_2531
CH55_2531	PF13502	CH55_2531
CH55_2532	PF00575	S1 RNA binding domain
CH55_2532	PF10150	Ribonuclease E/G family
CH55_2533	PF02545	Maf-like protein
CH55_2534	PF04093	CH55_2534
CH55_2535	PF04085	rod shape-determining protein MreC
CH55_2536	PF06723	MreB/Mbl protein
CH55_2537	PF00563	EAL domain
CH55_2537	PF00990	GGDEF domain
CH55_2537	PF17157	CH55_2537
CH55_2538	PF00107	Zinc-binding dehydrogenase
CH55_2538	PF08240	Alcohol dehydrogenase GroES-like domain
CH55_2539	PF00174	Oxidoreductase molybdopterin binding domain
CH55_254	PF00072	Response regulator receiver domain
CH55_254	PF01339	CheB methylesterase
CH55_2540	PF01794	CH55_2540
CH55_2541	PF01220	Dehydroquinase class II
CH55_2542	PF00364	Biotin-requiring enzyme
CH55_2543	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
CH55_2543	PF02785	Biotin carboxylase C-terminal domain
CH55_2543	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
CH55_2545	PF06196	CH55_2545
CH55_2546	PF00474	Sodium:solute symporter family
CH55_2547	PF06325	Ribosomal protein L11 methyltransferase (PrmA)
CH55_2548	PF01207	Dihydrouridine synthase (Dus)
CH55_2549	PF02954	Bacterial regulatory protein, Fis family
CH55_255	PF00072	Response regulator receiver domain
CH55_2551	PF00392	Bacterial regulatory proteins, gntR family
CH55_2551	PF07729	FCD domain
CH55_2552	PF07690	Major Facilitator Superfamily
CH55_2553	PF02627	Carboxymuconolactone decarboxylase family
CH55_2554	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
CH55_2554	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
CH55_2555	PF00753	Metallo-beta-lactamase superfamily
CH55_2556	PF05433	CH55_2556
CH55_2557	PF00313	'Cold-shock' DNA-binding domain
CH55_2558	PF00313	'Cold-shock' DNA-binding domain
CH55_2559	PF01797	Transposase IS200 like
CH55_256	PF04344	Chemotaxis phosphatase, CheZ
CH55_2561	PF13449	Esterase-like activity of phytase
CH55_2562	PF02798	Glutathione S-transferase, N-terminal domain
CH55_2562	PF13410	Glutathione S-transferase, C-terminal domain
CH55_2563	PF01380	SIS domain
CH55_2564	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
CH55_2564	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
CH55_2565	PF02653	CH55_2565
CH55_2566	PF02653	CH55_2566
CH55_2567	PF00005	ABC transporter
CH55_2568	PF13407	Periplasmic binding protein domain
CH55_2569	PF03279	CH55_2569
CH55_257	PF01510	N-acetylmuramoyl-L-alanine amidase
CH55_2571	PF00999	Sodium/hydrogen exchanger family
CH55_2572	PF00860	Permease family
CH55_2573	PF04221	RelB antitoxin
CH55_2574	PF00005	ABC transporter
CH55_2575	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_2576	PF00296	Luciferase-like monooxygenase
CH55_2577	PF09084	NMT1/THI5 like
CH55_2578	PF03358	NADPH-dependent FMN reductase
CH55_2579	PF01791	DeoC/LacD family aldolase
CH55_258	PF05658	Head domain of trimeric autotransporter adhesin
CH55_258	PF05662	Coiled stalk of trimeric autotransporter adhesin
CH55_2580	PF00294	pfkB family carbohydrate kinase
CH55_2581	PF05025	RbsD / FucU transport protein family
CH55_2582	PF02311	AraC-like ligand binding domain
CH55_2582	PF12833	Helix-turn-helix domain
CH55_2583	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
CH55_2584	PF01261	Xylose isomerase-like TIM barrel
CH55_2586	PF03527	CH55_2586
CH55_2586	PF05488	PAAR motif
CH55_2586	PF05593	CH55_2586
CH55_2587	PF08786	Domain of unknown function (DUF1795)
CH55_2588	PF05954	Phage late control gene D protein (GPD)
CH55_2589	PF12486	CH55_2589
CH55_259	PF03895	YadA-like C-terminal region
CH55_259	PF05662	Coiled stalk of trimeric autotransporter adhesin
CH55_2590	PF01381	Helix-turn-helix
CH55_2591	PF08845	CH55_2591
CH55_2593	PF09346	SMI1 / KNR4 family (SUKH-1)
CH55_2594	PF03527	CH55_2594
CH55_2595	PF05488	PAAR motif
CH55_2595	PF05593	CH55_2595
CH55_2596	PF08786	Domain of unknown function (DUF1795)
CH55_2597	PF05954	Phage late control gene D protein (GPD)
CH55_2598	PF12486	CH55_2598
CH55_2599	PF06812	CH55_2599
CH55_26	PF09335	CH55_26
CH55_2600	PF06744	CH55_2600
CH55_2600	PF06761	CH55_2600
CH55_2600	PF14331	CH55_2600
CH55_2601	PF06812	CH55_2601
CH55_2601	PF16989	CH55_2601
CH55_2602	PF11319	CH55_2602
CH55_2603	PF02954	Bacterial regulatory protein, Fis family
CH55_2604	PF00004	ATPase family associated with various cellular activities (AAA)
CH55_2604	PF07724	AAA domain (Cdc48 subfamily)
CH55_2604	PF10431	C-terminal, D2-small domain, of ClpB protein
CH55_2605	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
CH55_2606	PF05936	CH55_2606
CH55_2607	PF12790	Type VI secretion lipoprotein
CH55_2609	PF06996	CH55_2609
CH55_2610	PF05947	CH55_2610
CH55_2611	PF13518	Helix-turn-helix domain
CH55_2612	PF00665	Integrase core domain
CH55_2612	PF13276	CH55_2612
CH55_2613	PF06092	CH55_2613
CH55_2615	PF01266	FAD dependent oxidoreductase
CH55_2615	PF16901	CH55_2615
CH55_2616	PF00343	Carbohydrate phosphorylase
CH55_2617	PF00534	Glycosyl transferases group 1
CH55_2617	PF08323	Starch synthase catalytic domain
CH55_2618	PF08323	Starch synthase catalytic domain
CH55_2619	PF00483	Nucleotidyl transferase
CH55_262	PF00842	Alanine racemase, C-terminal domain
CH55_262	PF01168	Alanine racemase, N-terminal domain
CH55_2620	PF00128	Alpha amylase, catalytic domain
CH55_2620	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
CH55_2621	PF00128	Alpha amylase, catalytic domain
CH55_2621	PF02806	Alpha amylase, C-terminal all-beta domain
CH55_2621	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
CH55_2622	PF06580	CH55_2622
CH55_2622	PF07694	5TMR of 5TMR-LYT
CH55_2623	PF01476	LysM domain
CH55_2623	PF02369	Bacterial Ig-like domain (group 1)
CH55_2623	PF11924	Protein of unknown function (DUF3442)
CH55_2628	PF01118	Semialdehyde dehydrogenase, NAD binding domain
CH55_2628	PF02774	Semialdehyde dehydrogenase, dimerisation domain
CH55_2629	PF01914	CH55_2629
CH55_2633	PF01202	Shikimate kinase
CH55_2634	PF02447	CH55_2634
CH55_2635	PF00356	Bacterial regulatory proteins, lacI family
CH55_2635	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
CH55_2636	PF02678	Pirin
CH55_2638	PF00072	Response regulator receiver domain
CH55_2638	PF00486	Transcriptional regulatory protein, C terminal
CH55_2639	PF00294	pfkB family carbohydrate kinase
CH55_2640	PF01116	Fructose-bisphosphate aldolase class-II
CH55_2641	PF07385	Protein of unknown function (DUF1498)
CH55_2642	PF13407	Periplasmic binding protein domain
CH55_2643	PF02653	CH55_2643
CH55_2644	PF00005	ABC transporter
CH55_2645	PF00072	Response regulator receiver domain
CH55_2645	PF00512	His Kinase A (phospho-acceptor) domain
CH55_2645	PF00672	HAMP domain
CH55_2645	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_2645	PF12860	CH55_2645
CH55_2646	PF03486	HI0933-like protein
CH55_2647	PF01384	CH55_2647
CH55_2648	PF01797	Transposase IS200 like
CH55_2649	PF10625	CH55_2649
CH55_265	PF01734	Patatin-like phospholipase
CH55_2650	PF00582	Universal stress protein family
CH55_2651	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CH55_2651	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
CH55_2652	PF08548	Peptidase M10 serralysin C terminal
CH55_2653	PF04445	Putative SAM-dependent methyltransferase
CH55_2654	PF01432	Peptidase family M3
CH55_2655	PF04378	Ribosomal RNA small subunit methyltransferase D, RsmJ
CH55_2656	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
CH55_2656	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH55_2657	PF05651	CH55_2657
CH55_2657	PF13556	PucR C-terminal helix-turn-helix domain
CH55_2658	PF02447	CH55_2658
CH55_2659	PF02595	Glycerate kinase family
CH55_2660	PF06092	CH55_2660
CH55_2661	PF06092	CH55_2661
CH55_2662	PF11692	CH55_2662
CH55_2663	PF03212	Pertactin
CH55_2663	PF03797	Autotransporter beta-domain
CH55_2664	PF03631	CH55_2664
CH55_2665	PF13502	CH55_2665
CH55_2666	PF02611	CDP-diacylglycerol pyrophosphatase
CH55_2667	PF05170	CH55_2667
CH55_2668	PF00563	EAL domain
CH55_2669	PF01361	Tautomerase enzyme
CH55_2670	PF00294	pfkB family carbohydrate kinase
CH55_2671	PF00675	Insulinase (Peptidase family M16)
CH55_2671	PF05193	Peptidase M16 inactive domain
CH55_2672	PF00375	Sodium:dicarboxylate symporter family
CH55_2673	PF00754	F5/8 type C domain
CH55_2674	PF06917	Periplasmic pectate lyase
CH55_2675	PF06178	Oligogalacturonate-specific porin protein (KdgM)
CH55_2676	PF00563	EAL domain
CH55_2676	PF00990	GGDEF domain
CH55_2676	PF17154	CH55_2676
CH55_2677	PF01270	Glycosyl hydrolases family 8
CH55_2678	PF00005	ABC transporter
CH55_2678	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CH55_2679	PF00005	ABC transporter
CH55_2679	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CH55_268	PF01695	IstB-like ATP binding protein
CH55_2680	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_2680	PF12911	CH55_2680
CH55_2681	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_2682	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH55_2684	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
CH55_2684	PF08479	POTRA domain, ShlB-type
CH55_2684	PF17287	CH55_2684
CH55_2685	PF05860	haemagglutination activity domain
CH55_2686	PF01797	Transposase IS200 like
CH55_2688	PF07690	Major Facilitator Superfamily
CH55_2689	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_2689	PF05231	CH55_2689
CH55_2689	PF07730	Histidine kinase
CH55_2690	PF00072	Response regulator receiver domain
CH55_2690	PF00196	Bacterial regulatory proteins, luxR family
CH55_2691	PF00884	Sulfatase
CH55_2691	PF08019	CH55_2691
CH55_2692	PF12146	Putative lysophospholipase
CH55_2693	PF00324	Amino acid permease
CH55_2694	PF00221	Aromatic amino acid lyase
CH55_2695	PF01175	Urocanase
CH55_2695	PF17391	CH55_2695
CH55_2695	PF17392	CH55_2695
CH55_2696	PF00291	Pyridoxal-phosphate dependent enzyme
CH55_2697	PF00156	Phosphoribosyl transferase domain
CH55_2698	PF00892	EamA-like transporter family
CH55_2699	PF13535	ATP-grasp domain
CH55_27	PF01039	Carboxyl transferase domain
CH55_270	PF00665	Integrase core domain
CH55_270	PF02796	Helix-turn-helix domain of resolvase
CH55_2700	PF01497	Periplasmic binding protein
CH55_2701	PF01032	FecCD transport family
CH55_2702	PF01032	FecCD transport family
CH55_2703	PF13310	CH55_2703
CH55_2704	PF00005	ABC transporter
CH55_2706	PF01381	Helix-turn-helix
CH55_2707	PF13737	CH55_2707
CH55_2709	PF04606	CH55_2709
CH55_271	PF00171	Aldehyde dehydrogenase family
CH55_271	PF00465	Iron-containing alcohol dehydrogenase
CH55_2711	PF00589	Phage integrase family
CH55_2711	PF13356	Domain of unknown function (DUF4102)
CH55_2713	PF12833	Helix-turn-helix domain
CH55_2713	PF13377	Periplasmic binding protein-like domain
CH55_2714	PF02653	CH55_2714
CH55_2715	PF00005	ABC transporter
CH55_2716	PF13407	Periplasmic binding protein domain
CH55_2718	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
CH55_2718	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
CH55_2719	PF00419	Fimbrial protein
CH55_272	PF01914	CH55_272
CH55_2720	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH55_2720	PF02753	Pili assembly chaperone PapD, C-terminal domain
CH55_2721	PF00577	Outer membrane usher protein
CH55_2721	PF13953	PapC C-terminal domain
CH55_2722	PF00577	Outer membrane usher protein
CH55_2722	PF13954	PapC N-terminal domain
CH55_2723	PF00419	Fimbrial protein
CH55_2724	PF01757	CH55_2724
CH55_2725	PF13518	Helix-turn-helix domain
CH55_2726	PF00665	Integrase core domain
CH55_2726	PF13276	CH55_2726
CH55_2727	PF07690	Major Facilitator Superfamily
CH55_273	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH55_2730	PF13988	CH55_2730
CH55_2732	PF01526	CH55_2732
CH55_2733	PF09106	Elongation factor SelB, winged helix
CH55_2733	PF09107	Elongation factor SelB, winged helix
CH55_2734	PF00009	Elongation factor Tu GTP binding domain
CH55_2735	PF03841	L-seryl-tRNA selenium transferase
CH55_2735	PF12390	CH55_2735
CH55_2736	PF04216	Protein involved in formate dehydrogenase formation
CH55_2737	PF01292	Prokaryotic cytochrome b561
CH55_2738	PF09163	Formate dehydrogenase N, transmembrane
CH55_2738	PF13247	4Fe-4S dicluster domain
CH55_2739	PF00384	Molybdopterin oxidoreductase
CH55_2739	PF01568	Molydopterin dinucleotide binding domain
CH55_274	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_2740	PF00384	Molybdopterin oxidoreductase
CH55_2740	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
CH55_2741	PF02634	FdhD/NarQ family
CH55_2742	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
CH55_2742	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
CH55_2743	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CH55_2743	PF00672	HAMP domain
CH55_2743	PF16591	CH55_2743
CH55_2746	PF10517	CH55_2746
CH55_2747	PF10928	Protein of unknown function (DUF2810)
CH55_2749	PF05068	Mannitol repressor
CH55_275	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_275	PF12911	CH55_275
CH55_2750	PF01232	Mannitol dehydrogenase Rossmann domain
CH55_2750	PF08125	Mannitol dehydrogenase C-terminal domain
CH55_2751	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
CH55_2751	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
CH55_2751	PF02378	Phosphotransferase system, EIIC
CH55_2752	PF11254	CH55_2752
CH55_2753	PF02092	CH55_2753
CH55_2753	PF05746	DALR anticodon binding domain
CH55_2754	PF02091	Glycyl-tRNA synthetase alpha subunit
CH55_2756	PF03352	Methyladenine glycosylase
CH55_2757	PF13673	Acetyltransferase (GNAT) domain
CH55_2758	PF00691	OmpA family
CH55_2758	PF13488	CH55_2758
CH55_276	PF00005	ABC transporter
CH55_276	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CH55_2760	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
CH55_2760	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
CH55_2761	PF00128	Alpha amylase, catalytic domain
CH55_2763	PF00155	Aminotransferase class I and II
CH55_2764	PF02080	TrkA-C domain
CH55_2764	PF06826	CH55_2764
CH55_2765	PF00011	Hsp20/alpha crystallin family
CH55_2766	PF00011	Hsp20/alpha crystallin family
CH55_2767	PF07119	CH55_2767
CH55_2768	PF07676	WD40-like Beta Propeller Repeat
CH55_277	PF00005	ABC transporter
CH55_277	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CH55_2770	PF00291	Pyridoxal-phosphate dependent enzyme
CH55_2771	PF02423	Ornithine cyclodeaminase/mu-crystallin family
CH55_2772	PF13518	Helix-turn-helix domain
CH55_2774	PF00665	Integrase core domain
CH55_2774	PF13276	CH55_2774
CH55_2775	PF08282	haloacid dehalogenase-like hydrolase
CH55_2776	PF00204	DNA gyrase B
CH55_2776	PF00986	DNA gyrase B subunit, carboxyl terminus
CH55_2776	PF01751	Toprim domain
CH55_2776	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_2777	PF02463	RecF/RecN/SMC N terminal domain
CH55_2778	PF00712	DNA polymerase III beta subunit, N-terminal domain
CH55_2778	PF02767	DNA polymerase III beta subunit, central domain
CH55_2778	PF02768	DNA polymerase III beta subunit, C-terminal domain
CH55_2779	PF00308	Bacterial dnaA  protein
CH55_2779	PF08299	Bacterial dnaA protein helix-turn-helix
CH55_2779	PF11638	DnaA N-terminal domain
CH55_2781	PF00468	Ribosomal protein L34
CH55_2782	PF00825	Ribonuclease P
CH55_2783	PF01809	CH55_2783
CH55_2784	PF02096	60Kd inner membrane protein
CH55_2784	PF14849	YidC periplasmic domain
CH55_2785	PF01926	50S ribosome-binding GTPase
CH55_2785	PF10396	GTP-binding protein TrmE N-terminus
CH55_2785	PF12631	Catalytic cysteine-containing C-terminus of GTPase, MnmE
CH55_2786	PF07055	Enoyl reductase FAD binding domain
CH55_2786	PF12241	Trans-2-enoyl-CoA reductase catalytic region
CH55_2786	PF12242	NAD(P)H binding domain of trans-2-enoyl-CoA reductase
CH55_2789	PF00860	Permease family
CH55_279	PF04269	Protein of unknown function, DUF440
CH55_2790	PF13419	Haloacid dehalogenase-like hydrolase
CH55_2791	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_2792	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_2793	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH55_2794	PF04519	CH55_2794
CH55_2795	PF01895	PhoU domain
CH55_2796	PF00005	ABC transporter
CH55_2797	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_2798	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_2799	PF12849	PBP superfamily domain
CH55_28	PF02875	Mur ligase family, glutamate ligase domain
CH55_28	PF08245	Mur ligase middle domain
CH55_280	PF13091	PLD-like domain
CH55_280	PF13396	CH55_280
CH55_2800	PF01380	SIS domain
CH55_2800	PF13522	Glutamine amidotransferase domain
CH55_2801	PF00132	Bacterial transferase hexapeptide (six repeats)
CH55_2801	PF12804	MobA-like NTP transferase domain
CH55_2802	PF00401	ATP synthase, Delta/Epsilon chain, long alpha-helix domain
CH55_2802	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
CH55_2803	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CH55_2803	PF02874	ATP synthase alpha/beta family, beta-barrel domain
CH55_2804	PF00231	ATP synthase
CH55_2805	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CH55_2805	PF00306	ATP synthase alpha/beta chain, C terminal domain
CH55_2805	PF02874	ATP synthase alpha/beta family, beta-barrel domain
CH55_2806	PF00213	ATP synthase delta (OSCP) subunit
CH55_2807	PF00430	ATP synthase B/B' CF(0)
CH55_2808	PF00137	ATP synthase subunit C
CH55_2809	PF00119	ATP synthase A chain
CH55_281	PF13505	Outer membrane protein beta-barrel domain
CH55_2810	PF03899	CH55_2810
CH55_2811	PF02527	rRNA small subunit methyltransferase G
CH55_2812	PF01134	Glucose inhibited division protein A
CH55_2812	PF13932	GidA associated domain 3
CH55_2813	PF00258	Flavodoxin
CH55_2814	PF01037	AsnC family
CH55_2814	PF13412	Winged helix-turn-helix DNA-binding
CH55_2815	PF03590	Aspartate-ammonia ligase
CH55_2816	PF05762	VWA domain containing CoxE-like protein
CH55_2817	PF07728	AAA domain (dynein-related subfamily)
CH55_2817	PF12592	Protein of unknown function (DUF3763)
CH55_2818	PF02705	CH55_2818
CH55_2819	PF05025	RbsD / FucU transport protein family
CH55_2820	PF00294	pfkB family carbohydrate kinase
CH55_2821	PF07690	Major Facilitator Superfamily
CH55_2823	PF00392	Bacterial regulatory proteins, gntR family
CH55_2823	PF07729	FCD domain
CH55_283	PF13453	CH55_283
CH55_2832	PF04204	Homoserine O-succinyltransferase
CH55_2833	PF01274	Malate synthase
CH55_2834	PF00463	Isocitrate lyase family
CH55_2835	PF06315	Isocitrate dehydrogenase kinase/phosphatase (AceK)
CH55_2836	PF01614	Bacterial transcriptional regulator
CH55_2837	PF09339	IclR helix-turn-helix domain
CH55_2838	PF00809	Pterin binding enzyme
CH55_2838	PF02310	B12 binding domain
CH55_2838	PF02574	Homocysteine S-methyltransferase
CH55_2838	PF02607	B12 binding domain
CH55_2838	PF02965	Vitamin B12 dependent methionine synthase, activation domain
CH55_2839	PF05860	haemagglutination activity domain
CH55_2839	PF13332	CH55_2839
CH55_284	PF03795	YCII-related domain
CH55_2840	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
CH55_2840	PF08479	POTRA domain, ShlB-type
CH55_2840	PF17287	CH55_2840
CH55_2841	PF00696	Amino acid kinase family
CH55_2842	PF00342	Phosphoglucose isomerase
CH55_2843	PF06146	CH55_2843
CH55_2844	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_2845	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_2845	PF14785	Maltose transport system permease protein MalF P2 domain
CH55_2846	PF13416	Bacterial extracellular solute-binding protein
CH55_2848	PF00005	ABC transporter
CH55_2848	PF08402	TOBE domain
CH55_2849	PF02264	LamB porin
CH55_2850	PF07148	CH55_2850
CH55_2852	PF05638	Protein of unknown function (DUF796)
CH55_2853	PF05591	CH55_2853
CH55_2854	PF05943	CH55_2854
CH55_2855	PF04965	Gene 25-like lysozyme
CH55_2856	PF05947	CH55_2856
CH55_2857	PF00665	Integrase core domain
CH55_2857	PF02796	Helix-turn-helix domain of resolvase
CH55_2859	PF01695	IstB-like ATP binding protein
CH55_286	PF03544	Gram-negative bacterial TonB protein C-terminal
CH55_286	PF16031	CH55_286
CH55_2860	PF00665	Integrase core domain
CH55_2860	PF13276	CH55_2860
CH55_2861	PF05947	CH55_2861
CH55_2862	PF13518	Helix-turn-helix domain
CH55_2863	PF00455	CH55_2863
CH55_2863	PF08220	DeoR-like helix-turn-helix domain
CH55_2864	PF01694	Rhomboid family
CH55_2864	PF12122	Protein of unknown function (DUF3582)
CH55_2865	PF00581	Rhodanese-like domain
CH55_2866	PF00196	Bacterial regulatory proteins, luxR family
CH55_2868	PF00343	Carbohydrate phosphorylase
CH55_2869	PF02446	4-alpha-glucanotransferase
CH55_287	PF00872	CH55_287
CH55_2870	PF01106	NifU-like domain
CH55_2870	PF01521	Iron-sulphur cluster biosynthesis
CH55_2871	PF00156	Phosphoribosyl transferase domain
CH55_2872	PF00561	alpha/beta hydrolase fold
CH55_2873	PF07338	Protein of unknown function (DUF1471)
CH55_2874	PF09012	FeoC like transcriptional regulator
CH55_2875	PF02421	Ferrous iron transport protein B
CH55_2875	PF07664	CH55_2875
CH55_2875	PF07670	Nucleoside recognition
CH55_2876	PF04023	FeoA domain
CH55_2877	PF00575	S1 RNA binding domain
CH55_2877	PF09371	Tex-like protein N-terminal domain
CH55_2877	PF12836	Helix-hairpin-helix motif
CH55_2877	PF16921	CH55_2877
CH55_2878	PF01272	Transcription elongation factor, GreA/GreB, C-term
CH55_2878	PF03449	Transcription elongation factor, N-terminal
CH55_2879	PF00072	Response regulator receiver domain
CH55_2879	PF00486	Transcriptional regulatory protein, C terminal
CH55_288	PF03061	Thioesterase superfamily
CH55_2880	PF00512	His Kinase A (phospho-acceptor) domain
CH55_2880	PF00672	HAMP domain
CH55_2880	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_2881	PF01293	Phosphoenolpyruvate carboxykinase
CH55_2882	PF01430	Hsp33 protein
CH55_2883	PF01479	S4 domain
CH55_2884	PF13419	Haloacid dehalogenase-like hydrolase
CH55_2885	PF07095	Intracellular growth attenuator protein IgaA
CH55_2887	PF00293	NUDIX domain
CH55_2888	PF00905	Penicillin binding protein transpeptidase domain
CH55_2888	PF00912	Transglycosylase
CH55_2888	PF17092	CH55_2888
CH55_2889	PF11104	Type IV pilus assembly protein PilM;
CH55_289	PF04279	CH55_289
CH55_2890	PF05137	CH55_2890
CH55_2892	PF10748	CH55_2892
CH55_2893	PF00263	CH55_2893
CH55_2893	PF03958	Bacterial type II/III secretion system short domain
CH55_2894	PF01202	Shikimate kinase
CH55_2895	PF01761	3-dehydroquinate synthase
CH55_2896	PF05036	Sporulation related domain
CH55_2897	PF02086	D12 class N6 adenine-specific DNA methyltransferase
CH55_2898	PF00834	Ribulose-phosphate 3 epimerase family
CH55_2899	PF13419	Haloacid dehalogenase-like hydrolase
CH55_29	PF05036	Sporulation related domain
CH55_290	PF00916	CH55_290
CH55_2900	PF00579	tRNA synthetases class I (W and Y)
CH55_2901	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
CH55_2901	PF10414	Sirohaem synthase dimerisation region
CH55_2901	PF13241	Putative NAD(P)-binding
CH55_2901	PF14824	Sirohaem biosynthesis protein central
CH55_2902	PF01226	Formate/nitrite transporter
CH55_2903	PF13806	Rieske-like [2Fe-2S] domain
CH55_2904	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
CH55_2904	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
CH55_2904	PF04324	BFD-like [2Fe-2S] binding domain
CH55_2904	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH55_2905	PF07969	Amidohydrolase family
CH55_2906	PF07690	Major Facilitator Superfamily
CH55_2907	PF00593	TonB dependent receptor
CH55_2907	PF07715	TonB-dependent Receptor Plug Domain
CH55_2908	PF00356	Bacterial regulatory proteins, lacI family
CH55_2908	PF13377	Periplasmic binding protein-like domain
CH55_2909	PF02056	Family 4 glycosyl hydrolase
CH55_2909	PF11975	Family 4 glycosyl hydrolase C-terminal domain
CH55_291	PF01740	STAS domain
CH55_2910	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
CH55_2911	PF05872	CH55_2911
CH55_2912	PF00117	Glutamine amidotransferase class-I
CH55_2913	PF00202	Aminotransferase class-III
CH55_2914	PF12805	CH55_2914
CH55_2914	PF13515	CH55_2914
CH55_2915	PF00027	Cyclic nucleotide-binding domain
CH55_2915	PF00325	Bacterial regulatory proteins, crp family
CH55_2916	PF02566	OsmC-like protein
CH55_2917	PF06836	CH55_2917
CH55_2918	PF00485	Phosphoribulokinase / Uridine kinase family
CH55_2919	PF06794	Uncharacterised protein family (UPF0270)
CH55_292	PF06790	CH55_292
CH55_2920	PF00561	alpha/beta hydrolase fold
CH55_2921	PF01810	CH55_2921
CH55_2922	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
CH55_2923	PF00005	ABC transporter
CH55_2924	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_2925	PF02668	Taurine catabolism dioxygenase TauD, TfdA family
CH55_2926	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
CH55_2927	PF00535	Glycosyl transferase family 2
CH55_2928	PF00005	ABC transporter
CH55_2928	PF12848	ABC transporter
CH55_2929	PF00005	ABC transporter
CH55_293	PF03922	OmpW family
CH55_2930	PF02525	Flavodoxin-like fold
CH55_2931	PF00999	Sodium/hydrogen exchanger family
CH55_2931	PF02254	TrkA-N domain
CH55_2932	PF09526	CH55_2932
CH55_2933	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
CH55_2934	PF04102	SlyX
CH55_2935	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
CH55_2935	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
CH55_2936	PF08348	CH55_2936
CH55_2936	PF13309	CH55_2936
CH55_2937	PF02635	DsrE/DsrF-like family
CH55_2938	PF02635	DsrE/DsrF-like family
CH55_2939	PF04077	DsrH like protein
CH55_294	PF04972	BON domain
CH55_2940	PF00164	Ribosomal protein S12/S23
CH55_2941	PF00177	Ribosomal protein S7p/S5e
CH55_2942	PF00009	Elongation factor Tu GTP binding domain
CH55_2942	PF00679	Elongation factor G C-terminus
CH55_2942	PF03144	Elongation factor Tu domain 2
CH55_2942	PF03764	Elongation factor G, domain IV
CH55_2942	PF14492	Elongation Factor G, domain II
CH55_2943	PF00009	Elongation factor Tu GTP binding domain
CH55_2943	PF03143	Elongation factor Tu C-terminal domain
CH55_2943	PF03144	Elongation factor Tu domain 2
CH55_2944	PF01797	Transposase IS200 like
CH55_2945	PF04324	BFD-like [2Fe-2S] binding domain
CH55_2946	PF00210	Ferritin-like domain
CH55_2947	PF00338	Ribosomal protein S10p/S20e
CH55_2948	PF00297	Ribosomal protein L3
CH55_2949	PF00573	Ribosomal protein L4/L1 family
CH55_295	PF00290	Tryptophan synthase alpha chain
CH55_2950	PF00276	Ribosomal protein L23
CH55_2951	PF00181	Ribosomal Proteins L2, RNA binding domain
CH55_2951	PF03947	Ribosomal Proteins L2, C-terminal domain
CH55_2952	PF00203	Ribosomal protein S19
CH55_2953	PF00237	Ribosomal protein L22p/L17e
CH55_2954	PF00189	Ribosomal protein S3, C-terminal domain
CH55_2954	PF07650	KH domain
CH55_2955	PF00252	Ribosomal protein L16p/L10e
CH55_2956	PF00831	Ribosomal L29 protein
CH55_2957	PF00366	Ribosomal protein S17
CH55_2958	PF00238	Ribosomal protein L14p/L23e
CH55_2959	PF00467	KOW motif
CH55_2959	PF17136	CH55_2959
CH55_296	PF00291	Pyridoxal-phosphate dependent enzyme
CH55_2960	PF00281	Ribosomal protein L5
CH55_2960	PF00673	ribosomal L5P family C-terminus
CH55_2961	PF00253	Ribosomal protein S14p/S29e
CH55_2962	PF00410	Ribosomal protein S8
CH55_2963	PF00347	Ribosomal protein L6
CH55_2964	PF00861	Ribosomal L18p/L5e family
CH55_2965	PF00333	Ribosomal protein S5, N-terminal domain
CH55_2965	PF03719	Ribosomal protein S5, C-terminal domain
CH55_2966	PF00327	Ribosomal protein L30p/L7e
CH55_2967	PF00828	Ribosomal protein L18e/L15
CH55_2968	PF00344	SecY translocase
CH55_2969	PF00444	Ribosomal protein L36
CH55_297	PF00218	Indole-3-glycerol phosphate synthase
CH55_297	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
CH55_2970	PF00416	Ribosomal protein S13/S18
CH55_2971	PF00411	Ribosomal protein S11
CH55_2972	PF00163	Ribosomal protein S4/S9 N-terminal domain
CH55_2972	PF01479	S4 domain
CH55_2973	PF01000	RNA polymerase Rpb3/RpoA insert domain
CH55_2973	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
CH55_2973	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
CH55_2974	PF01196	Ribosomal protein L17
CH55_2975	PF13411	MerR HTH family regulatory protein
CH55_2976	PF03889	CH55_2976
CH55_2977	PF01741	Large-conductance mechanosensitive channel, MscL
CH55_2978	PF02080	TrkA-C domain
CH55_2978	PF02254	TrkA-N domain
CH55_2979	PF01029	NusB family
CH55_2979	PF01189	NOL1/NOP2/sun family
CH55_298	PF00591	Glycosyl transferase family, a/b domain
CH55_298	PF02885	Glycosyl transferase family, helical bundle domain
CH55_2980	PF00551	Formyl transferase
CH55_2980	PF02911	Formyl transferase, C-terminal domain
CH55_2981	PF01327	Polypeptide deformylase
CH55_2982	PF02481	DNA recombination-mediator protein A
CH55_2983	PF04361	CH55_2983
CH55_2984	PF01396	CH55_2984
CH55_2985	PF01300	Telomere recombination
CH55_2986	PF01488	Shikimate / quinate 5-dehydrogenase
CH55_2986	PF08501	Shikimate dehydrogenase substrate binding domain
CH55_2987	PF00132	Bacterial transferase hexapeptide (six repeats)
CH55_2988	PF01695	IstB-like ATP binding protein
CH55_2989	PF01695	IstB-like ATP binding protein
CH55_299	PF00117	Glutamine amidotransferase class-I
CH55_2991	PF00665	Integrase core domain
CH55_2991	PF02796	Helix-turn-helix domain of resolvase
CH55_2992	PF00583	Acetyltransferase (GNAT) family
CH55_2992	PF09500	Putative thioesterase (yiiD_Cterm)
CH55_2994	PF00860	Permease family
CH55_2995	PF03616	CH55_2995
CH55_2996	PF00270	DEAD/DEAH box helicase
CH55_2996	PF00271	Helicase conserved C-terminal domain
CH55_2996	PF17191	CH55_2996
CH55_2997	PF00588	SpoU rRNA Methylase family
CH55_2997	PF12105	SpoU, rRNA methylase, C-terminal
CH55_2998	PF02824	TGS domain
CH55_2998	PF04607	Region found in RelA / SpoT proteins
CH55_2998	PF13291	ACT domain
CH55_2998	PF13328	HD domain
CH55_2999	PF01192	RNA polymerase Rpb6
CH55_3	PF04333	CH55_3
CH55_30	PF02674	CH55_30
CH55_300	PF00425	chorismate binding enzyme
CH55_300	PF04715	Anthranilate synthase component I, N terminal region
CH55_3000	PF00625	Guanylate kinase
CH55_3001	PF01653	NAD-dependent DNA ligase adenylation domain
CH55_3001	PF03120	NAD-dependent DNA ligase OB-fold domain
CH55_3003	PF03458	CH55_3003
CH55_3004	PF03755	CH55_3004
CH55_3004	PF08340	CH55_3004
CH55_3005	PF01138	3' exoribonuclease family, domain 1
CH55_3005	PF03725	3' exoribonuclease family, domain 2
CH55_3006	PF00156	Phosphoribosyl transferase domain
CH55_3007	PF00440	Bacterial regulatory proteins, tetR family
CH55_3008	PF00692	dUTPase
CH55_3009	PF02441	Flavoprotein
CH55_3009	PF04127	DNA / pantothenate metabolism flavoprotein
CH55_301	PF02811	PHP domain
CH55_3010	PF04002	RadC-like JAB domain
CH55_3011	PF00830	Ribosomal L28 family
CH55_3012	PF00471	Ribosomal protein L33
CH55_3013	PF01149	Formamidopyrimidine-DNA glycosylase N-terminal domain
CH55_3013	PF06827	Zinc finger found in FPG and IleRS
CH55_3013	PF06831	Formamidopyrimidine-DNA glycosylase H2TH domain
CH55_3014	PF01467	Cytidylyltransferase
CH55_3015	PF00535	Glycosyl transferase family 2
CH55_3016	PF00534	Glycosyl transferases group 1
CH55_3016	PF04413	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
CH55_3017	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
CH55_3018	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
CH55_3019	PF01370	NAD dependent epimerase/dehydratase family
CH55_302	PF01300	Telomere recombination
CH55_3020	PF00155	Aminotransferase class I and II
CH55_3021	PF00107	Zinc-binding dehydrogenase
CH55_3021	PF08240	Alcohol dehydrogenase GroES-like domain
CH55_3022	PF04748	Divergent polysaccharide deacetylase
CH55_3023	PF04748	Divergent polysaccharide deacetylase
CH55_3024	PF01551	Peptidase family M23
CH55_3025	PF01676	Metalloenzyme superfamily
CH55_3025	PF06415	BPG-independent PGAM N-terminus (iPGM_N)
CH55_3026	PF00581	Rhodanese-like domain
CH55_3027	PF00462	Glutaredoxin
CH55_3028	PF02556	Preprotein translocase subunit SecB
CH55_3029	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
CH55_3029	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
CH55_303	PF00849	RNA pseudouridylate synthase
CH55_303	PF01479	S4 domain
CH55_3030	PF00132	Bacterial transferase hexapeptide (six repeats)
CH55_3030	PF06426	Serine acetyltransferase, N-terminal
CH55_3031	PF00588	SpoU rRNA Methylase family
CH55_3032	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
CH55_3032	PF02805	Metal binding domain of Ada
CH55_3032	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
CH55_3032	PF12833	Helix-turn-helix domain
CH55_3033	PF00512	His Kinase A (phospho-acceptor) domain
CH55_3033	PF00672	HAMP domain
CH55_3033	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_3033	PF16527	CH55_3033
CH55_3034	PF00072	Response regulator receiver domain
CH55_3034	PF00486	Transcriptional regulatory protein, C terminal
CH55_3035	PF07813	LTXXQ motif family protein
CH55_3036	PF04754	CH55_3036
CH55_3037	PF01545	Cation efflux family
CH55_3037	PF16916	CH55_3037
CH55_3038	PF00365	Phosphofructokinase
CH55_304	PF02572	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
CH55_304	PF12557	Cob(I)alamin adenosyltransferase N terminal
CH55_3040	PF13531	Bacterial extracellular solute-binding protein
CH55_3041	PF13531	Bacterial extracellular solute-binding protein
CH55_3042	PF00939	Sodium:sulfate symporter transmembrane region
CH55_3043	PF03737	Demethylmenaquinone methyltransferase
CH55_3044	PF02585	GlcNAc-PI de-N-acetylase
CH55_3045	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_3045	PF03466	LysR substrate binding domain
CH55_3046	PF00121	Triosephosphate isomerase
CH55_3047	PF07305	CH55_3047
CH55_3048	PF05656	CH55_3048
CH55_3049	PF00175	Oxidoreductase NAD-binding domain
CH55_3049	PF00970	Oxidoreductase FAD-binding domain
CH55_305	PF00106	short chain dehydrogenase
CH55_3050	PF03320	Bacterial fructose-1,6-bisphosphatase, glpX-encoded
CH55_3051	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
CH55_3051	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
CH55_3052	PF00230	Major intrinsic protein
CH55_3053	PF06005	Protein of unknown function (DUF904)
CH55_3054	PF01797	Transposase IS200 like
CH55_3055	PF00005	ABC transporter
CH55_3055	PF00664	ABC transporter transmembrane region
CH55_3055	PF03412	Peptidase C39 family
CH55_3056	PF13437	HlyD family secretion protein
CH55_3058	PF14016	CH55_3058
CH55_3059	PF03737	Demethylmenaquinone methyltransferase
CH55_306	PF01343	Peptidase family S49
CH55_306	PF08496	CH55_306
CH55_3060	PF01040	UbiA prenyltransferase family
CH55_3061	PF00004	ATPase family associated with various cellular activities (AAA)
CH55_3061	PF07724	AAA domain (Cdc48 subfamily)
CH55_3061	PF10431	C-terminal, D2-small domain, of ClpB protein
CH55_3062	PF00227	Proteasome subunit
CH55_3063	PF05036	Sporulation related domain
CH55_3064	PF00356	Bacterial regulatory proteins, lacI family
CH55_3064	PF13377	Periplasmic binding protein-like domain
CH55_3066	PF00270	DEAD/DEAH box helicase
CH55_3066	PF00271	Helicase conserved C-terminal domain
CH55_3067	PF01197	Ribosomal protein L31
CH55_3068	PF05360	CH55_3068
CH55_3069	PF01340	Met Apo-repressor, MetJ
CH55_307	PF10692	Protein of unknown function (DUF2498)
CH55_3070	PF01053	Cys/Met metabolism PLP-dependent enzyme
CH55_3071	PF01053	Cys/Met metabolism PLP-dependent enzyme
CH55_3072	PF00696	Amino acid kinase family
CH55_3072	PF00742	Homoserine dehydrogenase
CH55_3072	PF03447	Homoserine dehydrogenase, NAD binding domain
CH55_3073	PF02219	Methylenetetrahydrofolate reductase
CH55_3074	PF00665	Integrase core domain
CH55_3074	PF13276	CH55_3074
CH55_3075	PF13518	Helix-turn-helix domain
CH55_3076	PF00311	Phosphoenolpyruvate carboxylase
CH55_3077	PF01546	Peptidase family M20/M25/M40
CH55_3077	PF07687	Peptidase dimerisation domain
CH55_3078	PF01118	Semialdehyde dehydrogenase, NAD binding domain
CH55_3078	PF02774	Semialdehyde dehydrogenase, dimerisation domain
CH55_3079	PF00696	Amino acid kinase family
CH55_3080	PF00206	Lyase
CH55_3080	PF14698	Argininosuccinate lyase C-terminal
CH55_3082	PF07715	TonB-dependent Receptor Plug Domain
CH55_3083	PF00593	TonB dependent receptor
CH55_3084	PF06438	Heme-binding protein A (HasA)
CH55_3085	PF00005	ABC transporter
CH55_3085	PF00664	ABC transporter transmembrane region
CH55_3086	PF13437	HlyD family secretion protein
CH55_3086	PF13533	Biotin-lipoyl like
CH55_3087	PF03544	Gram-negative bacterial TonB protein C-terminal
CH55_3088	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
CH55_3088	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH55_3089	PF00462	Glutaredoxin
CH55_3089	PF08534	Redoxin
CH55_309	PF01131	DNA topoisomerase
CH55_309	PF01396	CH55_309
CH55_309	PF01751	Toprim domain
CH55_309	PF08272	Topoisomerase I zinc-ribbon-like
CH55_3090	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
CH55_3090	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH55_3091	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_3091	PF03466	LysR substrate binding domain
CH55_3093	PF00440	Bacterial regulatory proteins, tetR family
CH55_3094	PF07226	CH55_3094
CH55_3095	PF05958	tRNA (Uracil-5-)-methyltransferase
CH55_3096	PF00593	TonB dependent receptor
CH55_3096	PF07715	TonB-dependent Receptor Plug Domain
CH55_3097	PF01177	Asp/Glu/Hydantoin racemase
CH55_31	PF00156	Phosphoribosyl transferase domain
CH55_31	PF13522	Glutamine amidotransferase domain
CH55_310	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_310	PF03466	LysR substrate binding domain
CH55_3104	PF13407	Periplasmic binding protein domain
CH55_3105	PF00005	ABC transporter
CH55_3106	PF02653	CH55_3106
CH55_3107	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_3107	PF03466	LysR substrate binding domain
CH55_3108	PF02653	CH55_3108
CH55_3109	PF04219	CH55_3109
CH55_3110	PF01078	Magnesium chelatase, subunit ChlI
CH55_3110	PF13335	CH55_3110
CH55_3110	PF13541	Subunit ChlI of Mg-chelatase
CH55_3111	PF00205	Thiamine pyrophosphate enzyme, central domain
CH55_3111	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CH55_3111	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
CH55_3112	PF13710	ACT domain
CH55_3113	PF01063	Aminotransferase class IV
CH55_3114	PF00920	Dehydratase family
CH55_3115	PF00920	Dehydratase family
CH55_3116	PF00291	Pyridoxal-phosphate dependent enzyme
CH55_3116	PF00585	C-terminal regulatory domain of Threonine dehydratase
CH55_3117	PF06092	CH55_3117
CH55_3118	PF06092	CH55_3118
CH55_3119	PF06092	CH55_3119
CH55_312	PF00330	Aconitase family (aconitate hydratase)
CH55_312	PF00694	Aconitase C-terminal domain
CH55_3120	PF11692	CH55_3120
CH55_3122	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_3122	PF03466	LysR substrate binding domain
CH55_3123	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
CH55_3123	PF07991	Acetohydroxy acid isomeroreductase, catalytic domain
CH55_3125	PF06958	S-type Pyocin
CH55_3128	PF01320	Colicin immunity protein / pyocin immunity protein
CH55_3129	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH55_3129	PF02753	Pili assembly chaperone PapD, C-terminal domain
CH55_313	PF00925	GTP cyclohydrolase II
CH55_3130	PF00419	Fimbrial protein
CH55_3131	PF00577	Outer membrane usher protein
CH55_3131	PF13953	PapC C-terminal domain
CH55_3132	PF13954	PapC N-terminal domain
CH55_3133	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH55_3133	PF02753	Pili assembly chaperone PapD, C-terminal domain
CH55_3134	PF16970	CH55_3134
CH55_3135	PF00872	CH55_3135
CH55_3136	PF05096	Glutamine cyclotransferase
CH55_3137	PF13616	PPIC-type PPIASE domain
CH55_3138	PF00580	UvrD/REP helicase N-terminal domain
CH55_3138	PF13361	UvrD-like helicase C-terminal domain
CH55_3139	PF02541	Ppx/GppA phosphatase family
CH55_314	PF01569	PAP2 superfamily
CH55_3140	PF02541	Ppx/GppA phosphatase family
CH55_3141	PF00270	DEAD/DEAH box helicase
CH55_3141	PF00271	Helicase conserved C-terminal domain
CH55_3142	PF00085	Thioredoxin
CH55_3143	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CH55_3143	PF07497	Rho termination factor, RNA-binding domain
CH55_3143	PF07498	Rho termination factor, N-terminal domain
CH55_3144	PF00953	Glycosyl transferase family 4
CH55_3145	PF02706	Chain length determinant protein
CH55_3146	PF02350	UDP-N-acetylglucosamine 2-epimerase
CH55_3147	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
CH55_3147	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
CH55_3147	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
CH55_3148	PF16363	CH55_3148
CH55_3149	PF00483	Nucleotidyl transferase
CH55_315	PF06305	CH55_315
CH55_3150	PF00583	Acetyltransferase (GNAT) family
CH55_3151	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
CH55_3152	PF01943	CH55_3152
CH55_3153	PF07429	CH55_3153
CH55_3154	PF06899	CH55_3154
CH55_3155	PF03808	CH55_3155
CH55_3156	PF00324	Amino acid permease
CH55_316	PF13176	Tetratricopeptide repeat
CH55_316	PF13432	Tetratricopeptide repeat
CH55_3162	PF01797	Transposase IS200 like
CH55_3163	PF07219	CH55_3163
CH55_3164	PF04375	CH55_3164
CH55_3165	PF02602	Uroporphyrinogen-III synthase HemD
CH55_3166	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
CH55_3166	PF03900	Porphobilinogen deaminase, C-terminal domain
CH55_3167	PF01295	CH55_3167
CH55_3167	PF12633	CH55_3167
CH55_3168	PF01491	Frataxin-like domain
CH55_3169	PF13627	CH55_3169
CH55_3170	PF01678	Diaminopimelate epimerase
CH55_3171	PF04340	Protein of unknown function, DUF484
CH55_3172	PF00589	Phage integrase family
CH55_3172	PF02899	Phage integrase, N-terminal SAM-like domain
CH55_3173	PF00702	haloacid dehalogenase-like hydrolase
CH55_3174	PF00580	UvrD/REP helicase N-terminal domain
CH55_3174	PF13361	UvrD-like helicase C-terminal domain
CH55_3175	PF00440	Bacterial regulatory proteins, tetR family
CH55_3176	PF06792	Uncharacterised protein family (UPF0261)
CH55_3177	PF09370	TIM-barrel signal transduction protein
CH55_3178	PF01544	CorA-like Mg2+ transporter protein
CH55_3179	PF00892	EamA-like transporter family
CH55_318	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
CH55_3180	PF03061	Thioesterase superfamily
CH55_3181	PF02253	Phospholipase A1
CH55_3182	PF00270	DEAD/DEAH box helicase
CH55_3182	PF00271	Helicase conserved C-terminal domain
CH55_3182	PF00570	HRDC domain
CH55_3182	PF09382	RQC domain
CH55_3182	PF16124	CH55_3182
CH55_3183	PF01810	CH55_3183
CH55_3184	PF01810	CH55_3184
CH55_3185	PF12146	Putative lysophospholipase
CH55_3186	PF08282	haloacid dehalogenase-like hydrolase
CH55_3187	PF03272	CH55_3187
CH55_3188	PF03009	Glycerophosphoryl diester phosphodiesterase family
CH55_3189	PF01266	FAD dependent oxidoreductase
CH55_3189	PF04324	BFD-like [2Fe-2S] binding domain
CH55_319	PF01253	Translation initiation factor SUI1
CH55_3190	PF00890	FAD binding domain
CH55_3191	PF02754	CH55_3191
CH55_3192	PF08786	Domain of unknown function (DUF1795)
CH55_3193	PF02592	CH55_3193
CH55_3194	PF01206	Sulfurtransferase TusA
CH55_3195	PF00122	E1-E2 ATPase
CH55_3195	PF00403	Heavy-metal-associated domain
CH55_3195	PF00702	haloacid dehalogenase-like hydrolase
CH55_3196	PF07947	CH55_3196
CH55_3197	PF08850	CH55_3197
CH55_3198	PF10694	Protein of unknown function (DUF2500)
CH55_3199	PF06611	CH55_3199
CH55_32	PF02441	Flavoprotein
CH55_320	PF05433	CH55_320
CH55_3200	PF03602	Conserved hypothetical protein 95
CH55_3201	PF00448	SRP54-type protein, GTPase domain
CH55_3201	PF02881	SRP54-type protein, helical bundle domain
CH55_3202	PF00005	ABC transporter
CH55_3203	PF02687	CH55_3203
CH55_3204	PF00140	Sigma-70 factor, region 1
CH55_3204	PF04542	Sigma-70 region 2
CH55_3204	PF04545	Sigma-70, region 4
CH55_3205	PF01797	Transposase IS200 like
CH55_3206	PF12568	Acetyltransferase (GNAT) domain
CH55_3207	PF13458	Periplasmic binding protein
CH55_3208	PF02653	CH55_3208
CH55_3209	PF02653	CH55_3209
CH55_3209	PF11862	CH55_3209
CH55_321	PF00596	Class II Aldolase and Adducin N-terminal domain
CH55_3210	PF00005	ABC transporter
CH55_3210	PF12399	Branched-chain amino acid ATP-binding cassette transporter
CH55_3211	PF00005	ABC transporter
CH55_3218	PF16967	CH55_3218
CH55_3219	PF04449	CS1 type fimbrial major subunit
CH55_322	PF09932	CH55_322
CH55_3220	PF13416	Bacterial extracellular solute-binding protein
CH55_3221	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_3222	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_3223	PF00005	ABC transporter
CH55_3223	PF08402	TOBE domain
CH55_3224	PF03009	Glycerophosphoryl diester phosphodiesterase family
CH55_3225	PF03547	CH55_3225
CH55_3226	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_3226	PF03466	LysR substrate binding domain
CH55_3227	PF00892	EamA-like transporter family
CH55_3228	PF01717	Cobalamin-independent synthase, Catalytic domain
CH55_3228	PF08267	Cobalamin-independent synthase, N-terminal domain
CH55_3229	PF01738	Dienelactone hydrolase family
CH55_323	PF00923	Transaldolase
CH55_3230	PF01048	Phosphorylase superfamily
CH55_3231	PF13350	Tyrosine phosphatase family
CH55_3232	PF02554	CH55_3232
CH55_3232	PF13722	CH55_3232
CH55_3233	PF09335	CH55_3233
CH55_3234	PF02646	CH55_3234
CH55_3235	PF01209	ubiE/COQ5 methyltransferase family
CH55_3236	PF02036	SCP-2 sterol transfer family
CH55_3237	PF03109	CH55_3237
CH55_3238	PF02416	mttA/Hcf106 family
CH55_324	PF04328	CH55_324
CH55_3240	PF00902	Sec-independent protein translocase protein (TatC)
CH55_3241	PF01026	TatD related DNase
CH55_3242	PF00665	Integrase core domain
CH55_3242	PF02796	Helix-turn-helix domain of resolvase
CH55_3243	PF01695	IstB-like ATP binding protein
CH55_3244	PF01026	TatD related DNase
CH55_3245	PF00490	Delta-aminolevulinic acid dehydratase
CH55_3246	PF02357	Transcription termination factor nusG
CH55_3247	PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
CH55_3248	PF00175	Oxidoreductase NAD-binding domain
CH55_3248	PF00970	Oxidoreductase FAD-binding domain
CH55_3249	PF00108	Thiolase, N-terminal domain
CH55_3249	PF02803	Thiolase, C-terminal domain
CH55_325	PF02554	CH55_325
CH55_325	PF13722	CH55_325
CH55_3250	PF00378	Enoyl-CoA hydratase/isomerase family
CH55_3250	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
CH55_3250	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
CH55_3251	PF00557	Metallopeptidase family M24
CH55_3252	PF01205	Uncharacterized protein family UPF0029
CH55_3253	PF01797	Transposase IS200 like
CH55_3254	PF01205	Uncharacterized protein family UPF0029
CH55_3254	PF09186	Domain of unknown function (DUF1949)
CH55_3255	PF02386	Cation transport protein
CH55_3256	PF12724	Flavodoxin domain
CH55_326	PF00575	S1 RNA binding domain
CH55_326	PF00773	RNB domain
CH55_326	PF08206	Ribonuclease B OB domain
CH55_3261	PF01565	FAD binding domain
CH55_3261	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
CH55_3262	PF02237	Biotin protein ligase C terminal domain
CH55_3262	PF03099	Biotin/lipoate A/B protein ligase family
CH55_3262	PF08279	HTH domain
CH55_3263	PF00485	Phosphoribulokinase / Uridine kinase family
CH55_3264	PF13673	Acetyltransferase (GNAT) domain
CH55_3265	PF00665	Integrase core domain
CH55_3265	PF02796	Helix-turn-helix domain of resolvase
CH55_3267	PF01695	IstB-like ATP binding protein
CH55_327	PF07690	Major Facilitator Superfamily
CH55_3272	PF00009	Elongation factor Tu GTP binding domain
CH55_3272	PF03143	Elongation factor Tu C-terminal domain
CH55_3272	PF03144	Elongation factor Tu domain 2
CH55_3273	PF00584	SecE/Sec61-gamma subunits of protein translocation complex
CH55_3274	PF00467	KOW motif
CH55_3274	PF02357	Transcription termination factor nusG
CH55_3275	PF00298	Ribosomal protein L11, RNA binding domain
CH55_3275	PF03946	Ribosomal protein L11, N-terminal domain
CH55_3276	PF00687	Ribosomal protein L1p/L10e family
CH55_3277	PF00466	Ribosomal protein L10
CH55_3278	PF00542	Ribosomal protein L7/L12 C-terminal domain
CH55_3278	PF16320	CH55_3278
CH55_328	PF01370	NAD dependent epimerase/dehydratase family
CH55_3280	PF00562	RNA polymerase Rpb2, domain 6
CH55_3280	PF04560	RNA polymerase Rpb2, domain 7
CH55_3280	PF04561	RNA polymerase Rpb2, domain 2
CH55_3280	PF04563	RNA polymerase beta subunit
CH55_3280	PF04565	RNA polymerase Rpb2, domain 3
CH55_3280	PF10385	RNA polymerase beta subunit external 1 domain
CH55_3281	PF00623	RNA polymerase Rpb1, domain 2
CH55_3281	PF04983	RNA polymerase Rpb1, domain 3
CH55_3281	PF04997	RNA polymerase Rpb1, domain 1
CH55_3281	PF04998	RNA polymerase Rpb1, domain 5
CH55_3281	PF05000	RNA polymerase Rpb1, domain 4
CH55_3282	PF01797	Transposase IS200 like
CH55_3283	PF04055	Radical SAM superfamily
CH55_3283	PF06968	Biotin and Thiamin Synthesis associated domain
CH55_3284	PF05690	Thiazole biosynthesis protein ThiG
CH55_3285	PF02597	ThiS family
CH55_3286	PF00899	ThiF family
CH55_3287	PF02581	Thiamine monophosphate synthase/TENI
CH55_3288	PF01964	ThiC family
CH55_3288	PF13667	ThiC-associated domain
CH55_3289	PF04353	Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
CH55_329	PF00633	Helix-hairpin-helix motif
CH55_329	PF00730	HhH-GPD superfamily base excision DNA repair protein
CH55_329	PF10576	Iron-sulfur binding domain of endonuclease III
CH55_3290	PF00293	NUDIX domain
CH55_3290	PF09297	NADH pyrophosphatase zinc ribbon domain
CH55_3292	PF01208	Uroporphyrinogen decarboxylase (URO-D)
CH55_3293	PF04493	Endonuclease V
CH55_3294	PF04222	Protein of unknown function (DUF416)
CH55_3295	PF00216	Bacterial DNA-binding protein
CH55_3296	PF07356	CH55_3296
CH55_3297	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
CH55_3297	PF02843	Phosphoribosylglycinamide synthetase, C domain
CH55_3297	PF02844	Phosphoribosylglycinamide synthetase, N domain
CH55_3298	PF01808	AICARFT/IMPCHase bienzyme
CH55_3298	PF02142	MGS-like domain
CH55_33	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH55_330	PF02508	CH55_330
CH55_3304	PF01527	Transposase
CH55_3305	PF13276	CH55_3305
CH55_3305	PF13683	CH55_3305
CH55_3307	PF01695	IstB-like ATP binding protein
CH55_3308	PF01695	IstB-like ATP binding protein
CH55_3309	PF00665	Integrase core domain
CH55_3309	PF02796	Helix-turn-helix domain of resolvase
CH55_331	PF04205	FMN-binding domain
CH55_3310	PF00109	Beta-ketoacyl synthase, N-terminal domain
CH55_3310	PF00501	AMP-binding enzyme
CH55_3310	PF00550	Phosphopantetheine attachment site
CH55_3310	PF02801	Beta-ketoacyl synthase, C-terminal domain
CH55_3311	PF00593	TonB dependent receptor
CH55_3311	PF07715	TonB-dependent Receptor Plug Domain
CH55_3312	PF01546	Peptidase family M20/M25/M40
CH55_3312	PF07687	Peptidase dimerisation domain
CH55_3313	PF03806	CH55_3313
CH55_3314	PF12468	Type III secretion system leucine rich repeat protein
CH55_3314	PF14496	C-terminal novel E3 ligase, LRR-interacting
CH55_3315	PF12468	Type III secretion system leucine rich repeat protein
CH55_3316	PF12468	Type III secretion system leucine rich repeat protein
CH55_3316	PF14496	C-terminal novel E3 ligase, LRR-interacting
CH55_3317	PF13018	CH55_3317
CH55_3319	PF07906	CH55_3319
CH55_332	PF03116	CH55_332
CH55_3320	PF00873	AcrB/AcrD/AcrF family
CH55_3321	PF16576	CH55_3321
CH55_3323	PF00989	PAS fold
CH55_3323	PF00990	GGDEF domain
CH55_3323	PF05228	CH55_3323
CH55_3324	PF00563	EAL domain
CH55_3325	PF00665	Integrase core domain
CH55_3325	PF13276	CH55_3325
CH55_3326	PF13518	Helix-turn-helix domain
CH55_3327	PF00312	Ribosomal protein S15
CH55_3328	PF01509	TruB family pseudouridylate synthase (N terminal domain)
CH55_3328	PF09157	Pseudouridine synthase II TruB, C-terminal
CH55_3328	PF16198	CH55_3328
CH55_3329	PF02033	Ribosome-binding factor A
CH55_333	PF06445	GyrI-like small molecule binding domain
CH55_333	PF12833	Helix-turn-helix domain
CH55_3330	PF00009	Elongation factor Tu GTP binding domain
CH55_3330	PF03144	Elongation factor Tu domain 2
CH55_3330	PF04760	Translation initiation factor IF-2, N-terminal region
CH55_3330	PF08364	CH55_3330
CH55_3330	PF11987	Translation-initiation factor 2
CH55_3331	PF08529	NusA N-terminal domain
CH55_3331	PF13184	NusA-like KH domain
CH55_3331	PF14520	Helix-hairpin-helix domain
CH55_3332	PF02576	Uncharacterised BCR, YhbC family COG0779
CH55_3332	PF17384	CH55_3332
CH55_3335	PF03840	Preprotein translocase SecG subunit
CH55_3336	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
CH55_3336	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
CH55_3336	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
CH55_3336	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
CH55_3337	PF00809	Pterin binding enzyme
CH55_3338	PF00004	ATPase family associated with various cellular activities (AAA)
CH55_3338	PF01434	Peptidase family M41
CH55_3338	PF06480	FtsH Extracellular
CH55_3339	PF01728	FtsJ-like methyltransferase
CH55_334	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
CH55_334	PF10531	SLBB domain
CH55_334	PF13237	4Fe-4S dicluster domain
CH55_334	PF13375	RnfC Barrel sandwich hybrid domain
CH55_3340	PF01985	CRS1 / YhbY (CRM) domain
CH55_3341	PF01272	Transcription elongation factor, GreA/GreB, C-term
CH55_3341	PF03449	Transcription elongation factor, N-terminal
CH55_3342	PF02113	D-Ala-D-Ala carboxypeptidase 3 (S13) family
CH55_3343	PF00072	Response regulator receiver domain
CH55_3343	PF00486	Transcriptional regulatory protein, C terminal
CH55_3344	PF00512	His Kinase A (phospho-acceptor) domain
CH55_3344	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_3345	PF01018	GTP1/OBG
CH55_3345	PF01926	50S ribosome-binding GTPase
CH55_3346	PF00892	EamA-like transporter family
CH55_3347	PF01016	Ribosomal L27 protein
CH55_3348	PF00829	Ribosomal prokaryotic L21 protein
CH55_3349	PF00348	Polyprenyl synthetase
CH55_335	PF04060	Putative Fe-S cluster
CH55_335	PF14697	4Fe-4S dicluster domain
CH55_3350	PF02316	Mu DNA-binding domain
CH55_3351	PF13693	Winged helix-turn-helix DNA-binding
CH55_3352	PF00056	lactate/malate dehydrogenase, NAD binding domain
CH55_3352	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
CH55_3353	PF01316	Arginine repressor, DNA binding domain
CH55_3353	PF02863	Arginine repressor, C-terminal domain
CH55_3354	PF07338	Protein of unknown function (DUF1471)
CH55_3355	PF01225	Mur ligase family, catalytic domain
CH55_3355	PF02875	Mur ligase family, glutamate ligase domain
CH55_3355	PF08245	Mur ligase middle domain
CH55_3356	PF00316	Fructose-1-6-bisphosphatase
CH55_3357	PF00719	Inorganic pyrophosphatase
CH55_3358	PF06094	AIG2-like family
CH55_3359	PF04357	CH55_3359
CH55_336	PF02508	CH55_336
CH55_3360	PF04357	CH55_3360
CH55_3361	PF01103	Surface antigen
CH55_3361	PF07244	Surface antigen variable number repeat
CH55_3361	PF17243	CH55_3361
CH55_3362	PF01625	Peptide methionine sulfoxide reductase
CH55_3363	PF00571	CBS domain
CH55_3363	PF01595	CH55_3363
CH55_3363	PF03471	Transporter associated domain
CH55_3364	PF06526	Protein of unknown function (DUF1107)
CH55_3365	PF09695	CH55_3365
CH55_3366	PF00459	Inositol monophosphatase family
CH55_3367	PF00149	Calcineurin-like phosphoesterase
CH55_3367	PF02872	5'-nucleotidase, C-terminal domain
CH55_3368	PF01814	Hemerythrin HHE cation binding domain
CH55_3368	PF04405	CH55_3368
CH55_3369	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
CH55_3369	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
CH55_337	PF10754	CH55_337
CH55_3370	PF04225	Opacity-associated protein A LysM-like domain
CH55_3370	PF08525	CH55_3370
CH55_3371	PF12582	CH55_3371
CH55_3372	PF01797	Transposase IS200 like
CH55_3373	PF01281	Ribosomal protein L9, N-terminal domain
CH55_3373	PF03948	Ribosomal protein L9, C-terminal domain
CH55_3374	PF01084	Ribosomal protein S18
CH55_3375	PF01250	Ribosomal protein S6
CH55_3377	PF00326	Prolyl oligopeptidase family
CH55_3378	PF00665	Integrase core domain
CH55_3378	PF02796	Helix-turn-helix domain of resolvase
CH55_3379	PF01695	IstB-like ATP binding protein
CH55_338	PF00005	ABC transporter
CH55_338	PF00664	ABC transporter transmembrane region
CH55_3380	PF07338	Protein of unknown function (DUF1471)
CH55_3381	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
CH55_3381	PF02770	Acyl-CoA dehydrogenase, middle domain
CH55_3382	PF00588	SpoU rRNA Methylase family
CH55_3382	PF08032	RNA 2'-O ribose methyltransferase substrate binding
CH55_3383	PF00575	S1 RNA binding domain
CH55_3383	PF00773	RNB domain
CH55_3383	PF08206	Ribonuclease B OB domain
CH55_3383	PF08461	Ribonuclease R winged-helix domain
CH55_3384	PF02082	Transcriptional regulator
CH55_3385	PF00709	Adenylosuccinate synthetase
CH55_3386	PF09838	CH55_3386
CH55_3387	PF01145	SPFH domain / Band 7 family
CH55_3388	PF01145	SPFH domain / Band 7 family
CH55_3388	PF12221	CH55_3388
CH55_3389	PF01926	50S ribosome-binding GTPase
CH55_3389	PF13167	CH55_3389
CH55_3389	PF16360	CH55_3389
CH55_339	PF13533	Biotin-lipoyl like
CH55_3390	PF17209	CH55_3390
CH55_3391	PF01715	IPP transferase
CH55_3392	PF01119	DNA mismatch repair protein, C-terminal domain
CH55_3392	PF08676	MutL C terminal dimerisation domain
CH55_3392	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_3393	PF01476	LysM domain
CH55_3393	PF01520	N-acetylmuramoyl-L-alanine amidase
CH55_3393	PF11741	AMIN domain
CH55_3394	PF02367	Uncharacterised P-loop hydrolase UPF0079
CH55_3395	PF01256	Carbohydrate kinase
CH55_3395	PF03853	YjeF-related protein N-terminus
CH55_3396	PF08331	CH55_3396
CH55_3396	PF13484	CH55_3396
CH55_34	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_340	PF00529	HlyD family secretion protein
CH55_3400	PF00929	Exonuclease
CH55_3401	PF03193	Protein of unknown function, DUF258
CH55_3402	PF02666	CH55_3402
CH55_3403	PF00924	Mechanosensitive ion channel
CH55_3403	PF12794	CH55_3403
CH55_3403	PF12795	CH55_3403
CH55_3404	PF00152	tRNA synthetases class II (D, K and N)
CH55_3405	PF00890	FAD binding domain
CH55_3405	PF02910	Fumarate reductase flavoprotein C-term
CH55_3406	PF13085	2Fe-2S iron-sulfur cluster binding domain
CH55_3406	PF13183	4Fe-4S dicluster domain
CH55_3407	PF02300	Fumarate reductase subunit C
CH55_3408	PF02313	Fumarate reductase subunit D
CH55_3409	PF00893	Small Multidrug Resistance protein
CH55_341	PF00005	ABC transporter
CH55_341	PF00664	ABC transporter transmembrane region
CH55_341	PF03412	Peptidase C39 family
CH55_3410	PF01132	Elongation factor P (EF-P) OB domain
CH55_3410	PF08207	Elongation factor P (EF-P) KOW-like domain
CH55_3410	PF09285	Elongation factor P, C-terminal
CH55_3411	PF04055	Radical SAM superfamily
CH55_3411	PF13353	4Fe-4S single cluster domain
CH55_3412	PF13698	CH55_3412
CH55_3413	PF00118	TCP-1/cpn60 chaperonin family
CH55_3414	PF00166	Chaperonin 10 Kd subunit
CH55_3415	PF04186	CH55_3415
CH55_3416	PF00206	Lyase
CH55_3416	PF10415	Fumarase C C-terminus
CH55_3417	PF03605	CH55_3417
CH55_3418	PF03091	CutA1 divalent ion tolerance protein
CH55_3419	PF02683	CH55_3419
CH55_3419	PF11412	Disulphide bond corrector protein DsbC
CH55_3419	PF13899	Thioredoxin-like
CH55_3420	PF00384	Molybdopterin oxidoreductase
CH55_3420	PF01568	Molydopterin dinucleotide binding domain
CH55_3420	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
CH55_3421	PF12800	4Fe-4S binding domain
CH55_3421	PF13187	4Fe-4S dicluster domain
CH55_3422	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH55_3422	PF13247	4Fe-4S dicluster domain
CH55_3422	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
CH55_3423	PF00440	Bacterial regulatory proteins, tetR family
CH55_3425	PF03272	CH55_3425
CH55_3425	PF13402	Peptidase M60-like family
CH55_3429	PF06379	CH55_3429
CH55_343	PF02610	L-arabinose isomerase
CH55_343	PF11762	L-arabinose isomerase C-terminal domain
CH55_3430	PF02311	AraC-like ligand binding domain
CH55_3430	PF12833	Helix-turn-helix domain
CH55_3431	PF02311	AraC-like ligand binding domain
CH55_3431	PF12833	Helix-turn-helix domain
CH55_3434	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
CH55_3434	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
CH55_3435	PF06134	L-rhamnose isomerase (RhaA)
CH55_3436	PF00596	Class II Aldolase and Adducin N-terminal domain
CH55_3437	PF00465	Iron-containing alcohol dehydrogenase
CH55_3438	PF05336	Domain of unknown function (DUF718)
CH55_3439	PF00436	Single-strand binding protein family
CH55_344	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
CH55_344	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
CH55_3440	PF00005	ABC transporter
CH55_3441	PF04237	YjbR
CH55_3442	PF00155	Aminotransferase class I and II
CH55_3443	PF00842	Alanine racemase, C-terminal domain
CH55_3443	PF01168	Alanine racemase, N-terminal domain
CH55_3444	PF00772	DnaB-like helicase N terminal domain
CH55_3444	PF03796	DnaB-like helicase C terminal domain
CH55_3445	PF00107	Zinc-binding dehydrogenase
CH55_3445	PF08240	Alcohol dehydrogenase GroES-like domain
CH55_3446	PF09583	CH55_3446
CH55_3447	PF01207	Dihydrouridine synthase (Dus)
CH55_3448	PF01475	Ferric uptake regulator family
CH55_3449	PF00717	Peptidase S24-like
CH55_3449	PF01726	LexA DNA binding domain
CH55_345	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
CH55_3450	PF01219	Prokaryotic diacylglycerol kinase
CH55_3451	PF01553	Acyltransferase
CH55_3452	PF01040	UbiA prenyltransferase family
CH55_3453	PF04345	Chorismate lyase
CH55_3454	PF03797	Autotransporter beta-domain
CH55_3455	PF01565	FAD binding domain
CH55_3455	PF08031	Berberine and berberine like
CH55_3458	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH55_3459	PF00577	Outer membrane usher protein
CH55_3459	PF13953	PapC C-terminal domain
CH55_3459	PF13954	PapC N-terminal domain
CH55_346	PF00005	ABC transporter
CH55_3460	PF06551	CH55_3460
CH55_3461	PF02342	TerD domain
CH55_3462	PF02342	TerD domain
CH55_3463	PF03741	CH55_3463
CH55_3464	PF05099	Tellurite resistance protein TerB
CH55_3465	PF02342	TerD domain
CH55_3466	PF02342	TerD domain
CH55_3467	PF15632	CH55_3467
CH55_3468	PF12500	CH55_3468
CH55_3468	PF15609	CH55_3468
CH55_347	PF02653	CH55_347
CH55_3470	PF11202	CH55_3470
CH55_3470	PF15608	CH55_3470
CH55_3471	PF15617	CH55_3471
CH55_3473	PF02219	Methylenetetrahydrofolate reductase
CH55_3474	PF04055	Radical SAM superfamily
CH55_3475	PF06228	Haem utilisation ChuX/HutX
CH55_3476	PF13460	NADH(P)-binding
CH55_3477	PF00593	TonB dependent receptor
CH55_3477	PF07715	TonB-dependent Receptor Plug Domain
CH55_3478	PF05171	Haemin-degrading HemS
CH55_3479	PF01497	Periplasmic binding protein
CH55_348	PF02311	AraC-like ligand binding domain
CH55_348	PF12833	Helix-turn-helix domain
CH55_3480	PF01032	FecCD transport family
CH55_3481	PF00005	ABC transporter
CH55_3482	PF01053	Cys/Met metabolism PLP-dependent enzyme
CH55_3484	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_3484	PF03466	LysR substrate binding domain
CH55_3485	PF01206	Sulfurtransferase TusA
CH55_3486	PF04143	CH55_3486
CH55_3487	PF01312	FlhB HrpN YscU SpaS Family
CH55_3488	PF01311	CH55_3488
CH55_3489	PF01313	CH55_3489
CH55_349	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
CH55_349	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
CH55_3490	PF00813	CH55_3490
CH55_3491	PF01052	Surface presentation of antigens (SPOA)
CH55_3494	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CH55_3494	PF02874	ATP synthase alpha/beta family, beta-barrel domain
CH55_3495	PF00771	FHIPEP family
CH55_3496	PF00771	FHIPEP family
CH55_3497	PF06188	CH55_3497
CH55_3498	PF13327	CH55_3498
CH55_3499	PF01514	Secretory protein of YscJ/FliF family
CH55_35	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_350	PF13593	SBF-like CPA transporter family (DUF4137)
CH55_3501	PF06287	CH55_3501
CH55_3502	PF09392	Type III secretion needle MxiH like
CH55_3503	PF12833	Helix-turn-helix domain
CH55_3504	PF08988	Protein of unknown function (DUF1895)
CH55_3505	PF16693	CH55_3505
CH55_3506	PF00263	CH55_3506
CH55_3506	PF03958	Bacterial type II/III secretion system short domain
CH55_3507	PF00072	Response regulator receiver domain
CH55_3507	PF00512	His Kinase A (phospho-acceptor) domain
CH55_3507	PF01627	Hpt domain
CH55_3507	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_3508	PF00072	Response regulator receiver domain
CH55_3508	PF00196	Bacterial regulatory proteins, luxR family
CH55_3509	PF00375	Sodium:dicarboxylate symporter family
CH55_3510	PF00501	AMP-binding enzyme
CH55_3510	PF13193	AMP-binding enzyme C-terminal domain
CH55_3510	PF16177	CH55_3510
CH55_3511	PF04341	CH55_3511
CH55_3512	PF00474	Sodium:solute symporter family
CH55_3513	PF12715	Abhydrolase family
CH55_3514	PF00665	Integrase core domain
CH55_3514	PF02796	Helix-turn-helix domain of resolvase
CH55_3515	PF01695	IstB-like ATP binding protein
CH55_3516	PF00501	AMP-binding enzyme
CH55_3516	PF00550	Phosphopantetheine attachment site
CH55_3516	PF00668	Condensation domain
CH55_3517	PF00501	AMP-binding enzyme
CH55_3518	PF00550	Phosphopantetheine attachment site
CH55_3519	PF00668	Condensation domain
CH55_352	PF06097	CH55_352
CH55_3520	PF00501	AMP-binding enzyme
CH55_3520	PF00550	Phosphopantetheine attachment site
CH55_3520	PF00975	Thioesterase domain
CH55_3520	PF08242	Methyltransferase domain
CH55_3523	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
CH55_3524	PF00975	Thioesterase domain
CH55_3525	PF07690	Major Facilitator Superfamily
CH55_3526	PF00005	ABC transporter
CH55_3526	PF00664	ABC transporter transmembrane region
CH55_3527	PF00005	ABC transporter
CH55_3527	PF00664	ABC transporter transmembrane region
CH55_353	PF01238	Phosphomannose isomerase type I
CH55_3531	PF02447	CH55_3531
CH55_3533	PF03797	Autotransporter beta-domain
CH55_3534	PF03797	Autotransporter beta-domain
CH55_3535	PF05954	Phage late control gene D protein (GPD)
CH55_3535	PF06715	Gp5 C-terminal repeat (3 copies)
CH55_3537	PF03527	CH55_3537
CH55_3537	PF05593	CH55_3537
CH55_354	PF00206	Lyase
CH55_354	PF10415	Fumarase C C-terminus
CH55_3540	PF00939	Sodium:sulfate symporter transmembrane region
CH55_3541	PF00356	Bacterial regulatory proteins, lacI family
CH55_3541	PF13377	Periplasmic binding protein-like domain
CH55_3542	PF00665	Integrase core domain
CH55_3542	PF13276	CH55_3542
CH55_3543	PF00150	Cellulase (glycosyl hydrolase family 5)
CH55_3544	PF13518	Helix-turn-helix domain
CH55_3545	PF13347	MFS/sugar transport protein
CH55_3546	PF00593	TonB dependent receptor
CH55_3546	PF07715	TonB-dependent Receptor Plug Domain
CH55_3547	PF13434	L-lysine 6-monooxygenase (NADPH-requiring)
CH55_3548	PF04183	IucA / IucC family
CH55_3548	PF06276	Ferric iron reductase FhuF-like transporter
CH55_3549	PF13523	Acetyltransferase (GNAT) domain
CH55_355	PF05472	DNA replication terminus site-binding protein (Ter protein)
CH55_3550	PF04183	IucA / IucC family
CH55_3550	PF06276	Ferric iron reductase FhuF-like transporter
CH55_3551	PF04183	IucA / IucC family
CH55_3552	PF07690	Major Facilitator Superfamily
CH55_3553	PF00775	Dioxygenase
CH55_3554	PF10503	Esterase PHB depolymerase
CH55_3555	PF00765	Autoinducer synthetase
CH55_3556	PF00196	Bacterial regulatory proteins, luxR family
CH55_3556	PF03472	Autoinducer binding domain
CH55_3558	PF02517	CAAX protease self-immunity
CH55_356	PF07690	Major Facilitator Superfamily
CH55_3560	PF03811	CH55_3560
CH55_3560	PF12759	CH55_3560
CH55_3563	PF05591	CH55_3563
CH55_3564	PF05943	CH55_3564
CH55_3565	PF05936	CH55_3565
CH55_3566	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
CH55_3567	PF00691	OmpA family
CH55_3568	PF05638	Protein of unknown function (DUF796)
CH55_3569	PF00004	ATPase family associated with various cellular activities (AAA)
CH55_3569	PF07724	AAA domain (Cdc48 subfamily)
CH55_3569	PF10431	C-terminal, D2-small domain, of ClpB protein
CH55_357	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_357	PF03466	LysR substrate binding domain
CH55_3570	PF05954	Phage late control gene D protein (GPD)
CH55_3570	PF10106	CH55_3570
CH55_3570	PF13296	CH55_3570
CH55_3572	PF03811	CH55_3572
CH55_3572	PF12759	CH55_3572
CH55_3573	PF10106	CH55_3573
CH55_3574	PF01551	Peptidase family M23
CH55_3576	PF03811	CH55_3576
CH55_3576	PF12759	CH55_3576
CH55_3577	PF03400	CH55_3577
CH55_3578	PF10106	CH55_3578
CH55_3579	PF00589	Phage integrase family
CH55_358	PF00480	ROK family
CH55_3581	PF01276	Orn/Lys/Arg decarboxylase, major domain
CH55_3581	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
CH55_3581	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
CH55_3582	PF13407	Periplasmic binding protein domain
CH55_3583	PF00005	ABC transporter
CH55_3584	PF02653	CH55_3584
CH55_3585	PF00593	TonB dependent receptor
CH55_3585	PF07715	TonB-dependent Receptor Plug Domain
CH55_3586	PF01497	Periplasmic binding protein
CH55_3587	PF01464	Transglycosylase SLT domain
CH55_3587	PF11873	Domain of unknown function (DUF3393)
CH55_3588	PF04362	Bacterial Fe(2+) trafficking
CH55_3589	PF00633	Helix-hairpin-helix motif
CH55_3589	PF00730	HhH-GPD superfamily base excision DNA repair protein
CH55_3589	PF10576	Iron-sulfur binding domain of endonuclease III
CH55_3589	PF14815	NUDIX domain
CH55_3590	PF02390	Putative methyltransferase
CH55_3591	PF04320	CH55_3591
CH55_3592	PF04960	Glutaminase
CH55_3593	PF11101	CH55_3593
CH55_3594	PF11101	CH55_3594
CH55_3595	PF11713	Peptidase C80 family
CH55_3596	PF04055	Radical SAM superfamily
CH55_3596	PF06969	HemN C-terminal domain
CH55_3597	PF01725	Ham1 family
CH55_3598	PF02594	Uncharacterised ACR, YggU family COG1872
CH55_3599	PF02325	CH55_3599
CH55_36	PF00005	ABC transporter
CH55_360	PF13500	AAA domain
CH55_3600	PF03807	NADP oxidoreductase coenzyme F420-dependent
CH55_3600	PF14748	Pyrroline-5-carboxylate reductase dimerisation
CH55_3601	PF01168	Alanine racemase, N-terminal domain
CH55_3602	PF00437	Type II/IV secretion system protein
CH55_3603	PF04371	Porphyromonas-type peptidyl-arginine deiminase
CH55_3604	PF00795	Carbon-nitrogen hydrolase
CH55_3605	PF03652	Uncharacterised protein family (UPF0081)
CH55_3606	PF02622	Uncharacterized ACR, COG1678
CH55_3607	PF02951	Prokaryotic glutathione synthetase, N-terminal domain
CH55_3607	PF02955	Prokaryotic glutathione synthetase, ATP-grasp domain
CH55_3608	PF04452	RNA methyltransferase
CH55_3609	PF04231	Endonuclease I
CH55_361	PF00654	Voltage gated chloride channel
CH55_3610	PF10263	CH55_3610
CH55_3610	PF17283	CH55_3610
CH55_3611	PF00438	S-adenosylmethionine synthetase, N-terminal domain
CH55_3611	PF02772	S-adenosylmethionine synthetase, central domain
CH55_3611	PF02773	S-adenosylmethionine synthetase, C-terminal domain
CH55_3613	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
CH55_3614	PF00355	Rieske [2Fe-2S] domain
CH55_3615	PF01435	Peptidase family M48
CH55_3616	PF00456	Transketolase, thiamine diphosphate binding domain
CH55_3616	PF02779	Transketolase, pyrimidine binding domain
CH55_3616	PF02780	Transketolase, C-terminal domain
CH55_3617	PF01797	Transposase IS200 like
CH55_3618	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CH55_3618	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
CH55_3619	PF00162	Phosphoglycerate kinase
CH55_362	PF00356	Bacterial regulatory proteins, lacI family
CH55_362	PF13377	Periplasmic binding protein-like domain
CH55_3620	PF01116	Fructose-bisphosphate aldolase class-II
CH55_3621	PF00924	Mechanosensitive ion channel
CH55_3621	PF05552	Conserved TM helix
CH55_3622	PF01810	CH55_3622
CH55_3623	PF04402	Protein of unknown function (DUF541)
CH55_3624	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_3624	PF03466	LysR substrate binding domain
CH55_3625	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
CH55_3626	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
CH55_3626	PF01842	ACT domain
CH55_3626	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
CH55_3627	PF01812	5-formyltetrahydrofolate cyclo-ligase family
CH55_3628	PF05164	Cell division protein ZapA
CH55_3629	PF03695	Uncharacterised protein family (UPF0149)
CH55_3630	PF00557	Metallopeptidase family M24
CH55_3630	PF05195	Aminopeptidase P, N-terminal domain
CH55_3631	PF01494	FAD binding domain
CH55_3632	PF01494	FAD binding domain
CH55_3633	PF01571	Aminomethyltransferase folate-binding domain
CH55_3633	PF08669	Glycine cleavage T-protein C-terminal barrel domain
CH55_3634	PF01597	Glycine cleavage H-protein
CH55_3635	PF02347	Glycine cleavage system P-protein
CH55_3636	PF13924	CH55_3636
CH55_3638	PF03895	YadA-like C-terminal region
CH55_3638	PF05658	Head domain of trimeric autotransporter adhesin
CH55_3638	PF05662	Coiled stalk of trimeric autotransporter adhesin
CH55_364	PF13407	Periplasmic binding protein domain
CH55_3640	PF03006	CH55_3640
CH55_3641	PF09933	CH55_3641
CH55_3642	PF01571	Aminomethyltransferase folate-binding domain
CH55_3643	PF03937	Flavinator of succinate dehydrogenase
CH55_3644	PF00072	Response regulator receiver domain
CH55_3644	PF00486	Transcriptional regulatory protein, C terminal
CH55_3645	PF00512	His Kinase A (phospho-acceptor) domain
CH55_3645	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_3645	PF14827	Sensory domain of two-component sensor kinase
CH55_3646	PF06123	CH55_3646
CH55_3647	PF00258	Flavodoxin
CH55_3648	PF00589	Phage integrase family
CH55_3648	PF02899	Phage integrase, N-terminal SAM-like domain
CH55_3649	PF10411	Disulfide bond isomerase protein N-terminus
CH55_3649	PF13098	Thioredoxin-like domain
CH55_365	PF13379	NMT1-like family
CH55_3650	PF01368	DHH family
CH55_3650	PF02272	DHHA1 domain
CH55_3651	PF00472	RF-1 domain
CH55_3651	PF03462	PCRF domain
CH55_3652	PF00152	tRNA synthetases class II (D, K and N)
CH55_3652	PF01336	OB-fold nucleic acid binding domain
CH55_3654	PF00589	Phage integrase family
CH55_3654	PF13356	Domain of unknown function (DUF4102)
CH55_3656	PF05016	Plasmid stabilisation system protein
CH55_3657	PF01381	Helix-turn-helix
CH55_3658	PF15723	CH55_3658
CH55_3659	PF15731	CH55_3659
CH55_366	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_3660	PF03288	Poxvirus D5 protein-like
CH55_3660	PF08273	Zinc-binding domain of primase-helicase
CH55_3660	PF08706	CH55_3660
CH55_3660	PF13362	Toprim domain
CH55_3661	PF05973	CH55_3661
CH55_3662	PF05930	Prophage CP4-57 regulatory protein (AlpA)
CH55_3666	PF02661	Fic/DOC family
CH55_3667	PF05488	PAAR motif
CH55_3667	PF06958	S-type Pyocin
CH55_3668	PF14206	CH55_3668
CH55_367	PF00005	ABC transporter
CH55_3670	PF09204	Bacterial self-protective colicin-like immunity
CH55_3672	PF11340	CH55_3672
CH55_3674	PF05488	PAAR motif
CH55_3675	PF12977	Domain of Unknown Function with PDB structure (DUF3861)
CH55_3676	PF03551	Transcriptional regulator PadR-like family
CH55_3677	PF05708	Orthopoxvirus protein of unknown function (DUF830)
CH55_3679	PF13407	Periplasmic binding protein domain
CH55_368	PF01048	Phosphorylase superfamily
CH55_368	PF10423	Bacterial AMP nucleoside phosphorylase N-terminus
CH55_3680	PF02653	CH55_3680
CH55_3681	PF00005	ABC transporter
CH55_3682	PF00005	ABC transporter
CH55_3682	PF08402	TOBE domain
CH55_3683	PF13416	Bacterial extracellular solute-binding protein
CH55_3684	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_3685	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_3686	PF07745	Glycosyl hydrolase family 53
CH55_3687	PF07745	Glycosyl hydrolase family 53
CH55_3688	PF02449	Beta-galactosidase
CH55_3688	PF08532	Beta-galactosidase trimerisation domain
CH55_3688	PF08533	Beta-galactosidase C-terminal domain
CH55_3689	PF00367	phosphotransferase system, EIIB
CH55_3690	PF02264	LamB porin
CH55_3691	PF00356	Bacterial regulatory proteins, lacI family
CH55_3691	PF13377	Periplasmic binding protein-like domain
CH55_3692	PF01055	Glycosyl hydrolases family 31
CH55_3692	PF13802	Galactose mutarotase-like
CH55_3692	PF17137	CH55_3692
CH55_3693	PF07690	Major Facilitator Superfamily
CH55_3694	PF00356	Bacterial regulatory proteins, lacI family
CH55_3694	PF13377	Periplasmic binding protein-like domain
CH55_3695	PF01965	DJ-1/PfpI family
CH55_3697	PF01116	Fructose-bisphosphate aldolase class-II
CH55_3698	PF10022	CH55_3698
CH55_3699	PF00884	Sulfatase
CH55_37	PF01370	NAD dependent epimerase/dehydratase family
CH55_37	PF08338	Domain of unknown function (DUF1731)
CH55_370	PF07520	CH55_370
CH55_3700	PF04055	Radical SAM superfamily
CH55_3700	PF13186	Iron-sulfur cluster-binding domain
CH55_3701	PF07470	Glycosyl Hydrolase Family 88
CH55_3702	PF13561	Enoyl-(Acyl carrier protein) reductase
CH55_3703	PF00106	short chain dehydrogenase
CH55_3704	PF01979	Amidohydrolase family
CH55_3705	PF03610	PTS system fructose IIA component
CH55_3706	PF03613	CH55_3706
CH55_3707	PF03609	CH55_3707
CH55_3708	PF03830	PTS system sorbose subfamily IIB component
CH55_3709	PF01380	SIS domain
CH55_371	PF10139	CH55_371
CH55_3710	PF08013	Tagatose 6 phosphate kinase
CH55_3711	PF00455	CH55_3711
CH55_3711	PF08220	DeoR-like helix-turn-helix domain
CH55_3712	PF00884	Sulfatase
CH55_3713	PF01797	Transposase IS200 like
CH55_3714	PF00665	Integrase core domain
CH55_3714	PF02796	Helix-turn-helix domain of resolvase
CH55_3715	PF01695	IstB-like ATP binding protein
CH55_3716	PF02278	Polysaccharide lyase family 8, super-sandwich domain
CH55_3716	PF02884	Polysaccharide lyase family 8, C-terminal beta-sandwich domain
CH55_3716	PF09093	Lyase, catalytic
CH55_3717	PF09092	Lyase, N terminal
CH55_3717	PF09093	Lyase, catalytic
CH55_3718	PF03797	Autotransporter beta-domain
CH55_3719	PF16946	CH55_3719
CH55_372	PF10139	CH55_372
CH55_3721	PF00484	Carbonic anhydrase
CH55_3723	PF11356	Type IV pilus biogenesis
CH55_3724	PF00263	CH55_3724
CH55_3724	PF03958	Bacterial type II/III secretion system short domain
CH55_3725	PF00437	Type II/IV secretion system protein
CH55_3727	PF00482	Type II secretion system (T2SS), protein F
CH55_3728	PF07963	Prokaryotic N-terminal methylation motif
CH55_3728	PF08334	Type II secretion system (T2SS), protein G
CH55_3729	PF07963	Prokaryotic N-terminal methylation motif
CH55_373	PF07313	Protein of unknown function (DUF1460)
CH55_3730	PF02501	Type II secretion system (T2SS), protein I
CH55_3731	PF07963	Prokaryotic N-terminal methylation motif
CH55_3731	PF11612	Type II secretion system (T2SS), protein J
CH55_3732	PF03934	Type II secretion system (T2SS), protein K
CH55_3733	PF05134	Type II secretion system (T2SS), protein L
CH55_3733	PF12693	GspL periplasmic domain
CH55_3735	PF01478	Type IV leader peptidase family
CH55_3735	PF06750	CH55_3735
CH55_3736	PF09691	Bacterial chaperone lipoprotein (PulS_OutS)
CH55_3737	PF00486	Transcriptional regulatory protein, C terminal
CH55_3738	PF02203	Tar ligand binding domain homologue
CH55_3739	PF01323	DSBA-like thioredoxin domain
CH55_374	PF00205	Thiamine pyrophosphate enzyme, central domain
CH55_374	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CH55_374	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
CH55_3740	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CH55_3741	PF00753	Metallo-beta-lactamase superfamily
CH55_3742	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_3742	PF03466	LysR substrate binding domain
CH55_3743	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_3743	PF03466	LysR substrate binding domain
CH55_3744	PF07690	Major Facilitator Superfamily
CH55_3745	PF00356	Bacterial regulatory proteins, lacI family
CH55_3745	PF13377	Periplasmic binding protein-like domain
CH55_3746	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
CH55_3746	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
CH55_3747	PF00384	Molybdopterin oxidoreductase
CH55_3747	PF01568	Molydopterin dinucleotide binding domain
CH55_3749	PF00501	AMP-binding enzyme
CH55_3749	PF01553	Acyltransferase
CH55_3749	PF13193	AMP-binding enzyme C-terminal domain
CH55_375	PF13710	ACT domain
CH55_3750	PF07690	Major Facilitator Superfamily
CH55_3753	PF00248	Aldo/keto reductase family
CH55_3754	PF02976	DNA mismatch repair enzyme MutH
CH55_3755	PF00293	NUDIX domain
CH55_3756	PF00391	PEP-utilising enzyme, mobile domain
CH55_3756	PF01590	GAF domain
CH55_3756	PF05524	PEP-utilising enzyme, N-terminal
CH55_3757	PF02896	PEP-utilising enzyme, TIM barrel domain
CH55_3758	PF01790	CH55_3758
CH55_3759	PF00303	Thymidylate synthase
CH55_376	PF13419	Haloacid dehalogenase-like hydrolase
CH55_3761	PF07963	Prokaryotic N-terminal methylation motif
CH55_3763	PF10713	CH55_3763
CH55_3764	PF07963	Prokaryotic N-terminal methylation motif
CH55_3764	PF12528	CH55_3764
CH55_3765	PF04257	Exodeoxyribonuclease V, gamma subunit
CH55_3766	PF00675	Insulinase (Peptidase family M16)
CH55_3766	PF05193	Peptidase M16 inactive domain
CH55_3766	PF16187	CH55_3766
CH55_3767	PF00580	UvrD/REP helicase N-terminal domain
CH55_3767	PF13361	UvrD-like helicase C-terminal domain
CH55_3768	PF13538	UvrD-like helicase C-terminal domain
CH55_3768	PF13604	AAA domain
CH55_3769	PF00583	Acetyltransferase (GNAT) family
CH55_3769	PF00696	Amino acid kinase family
CH55_377	PF13208	CH55_377
CH55_377	PF15615	CH55_377
CH55_3770	PF01520	N-acetylmuramoyl-L-alanine amidase
CH55_3770	PF11741	AMIN domain
CH55_3773	PF03562	MltA specific insert domain
CH55_3773	PF06725	3D domain
CH55_3774	PF00899	ThiF family
CH55_3775	PF02657	Fe-S metabolism associated domain
CH55_3776	PF00266	Aminotransferase class-V
CH55_3777	PF06004	Bacterial protein of unknown function (DUF903)
CH55_3778	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_3778	PF03466	LysR substrate binding domain
CH55_3779	PF04241	CH55_3779
CH55_378	PF00245	Alkaline phosphatase
CH55_3780	PF01728	FtsJ-like methyltransferase
CH55_3781	PF01367	5'-3' exonuclease, C-terminal SAM fold
CH55_3781	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
CH55_3782	PF03641	Possible lysine decarboxylase
CH55_3782	PF11892	Domain of unknown function (DUF3412)
CH55_3782	PF14793	Domain of unknown function (DUF4478)
CH55_3783	PF14489	QueF-like protein
CH55_3783	PF14819	Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term
CH55_3784	PF07348	Syd protein (SUKH-2)
CH55_3785	PF01797	Transposase IS200 like
CH55_3786	PF04287	tRNA pseudouridine synthase C
CH55_3787	PF00849	RNA pseudouridylate synthase
CH55_3788	PF00258	Flavodoxin
CH55_3789	PF11944	CH55_3789
CH55_379	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
CH55_379	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
CH55_3790	PF01797	Transposase IS200 like
CH55_3791	PF00132	Bacterial transferase hexapeptide (six repeats)
CH55_3791	PF14602	Hexapeptide repeat of succinyl-transferase
CH55_3791	PF14805	Tetrahydrodipicolinate N-succinyltransferase N-terminal
CH55_3792	PF01842	ACT domain
CH55_3792	PF01909	Nucleotidyltransferase domain
CH55_3792	PF01966	HD domain
CH55_3792	PF08335	GlnD PII-uridylyltransferase
CH55_3793	PF00557	Metallopeptidase family M24
CH55_3794	PF00318	Ribosomal protein S2
CH55_3795	PF00889	Elongation factor TS
CH55_3796	PF00696	Amino acid kinase family
CH55_3797	PF01765	Ribosome recycling factor
CH55_3798	PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
CH55_3798	PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal
CH55_3798	PF13288	DXP reductoisomerase C-terminal domain
CH55_3799	PF01255	Putative undecaprenyl diphosphate synthase
CH55_38	PF00563	EAL domain
CH55_380	PF00027	Cyclic nucleotide-binding domain
CH55_380	PF13545	Crp-like helix-turn-helix domain
CH55_3800	PF01148	Cytidylyltransferase family
CH55_3801	PF00595	PDZ domain (Also known as DHR or GLGF)
CH55_3801	PF02163	Peptidase family M50
CH55_3802	PF01103	Surface antigen
CH55_3802	PF07244	Surface antigen variable number repeat
CH55_3803	PF03938	Outer membrane protein (OmpH-like)
CH55_3804	PF00132	Bacterial transferase hexapeptide (six repeats)
CH55_3804	PF04613	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
CH55_3805	PF07977	FabA-like domain
CH55_3806	PF00132	Bacterial transferase hexapeptide (six repeats)
CH55_3806	PF13720	Udp N-acetylglucosamine O-acyltransferase; Domain 2
CH55_3807	PF02684	CH55_3807
CH55_3808	PF01351	Ribonuclease HII
CH55_3809	PF01336	OB-fold nucleic acid binding domain
CH55_3809	PF02811	PHP domain
CH55_3809	PF07733	Bacterial DNA polymerase III alpha subunit
CH55_3809	PF14579	Helix-hairpin-helix motif
CH55_381	PF00582	Universal stress protein family
CH55_3810	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
CH55_3811	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
CH55_3812	PF01171	PP-loop family
CH55_3812	PF09179	TilS substrate binding domain
CH55_3812	PF11734	TilS substrate C-terminal domain
CH55_3813	PF00034	Cytochrome c
CH55_3814	PF07073	Modulator of Rho-dependent transcription termination (ROF)
CH55_3815	PF06786	CH55_3815
CH55_3816	PF07152	YaeQ protein
CH55_3817	PF00472	RF-1 domain
CH55_3818	PF04170	NlpE N-terminal domain
CH55_3818	PF17185	CH55_3818
CH55_3819	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
CH55_3819	PF03129	Anticodon binding domain
CH55_3819	PF04073	Aminoacyl-tRNA editing domain
CH55_382	PF02233	NAD(P) transhydrogenase beta subunit
CH55_3820	PF01980	Uncharacterised protein family UPF0066
CH55_3821	PF16358	CH55_3821
CH55_3822	PF03180	NLPA lipoprotein
CH55_3823	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_3824	PF00005	ABC transporter
CH55_3824	PF09383	NIL domain
CH55_3825	PF13242	HAD-hyrolase-like
CH55_383	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
CH55_383	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
CH55_383	PF12769	Domain of unknown function (DUF3814)
CH55_3831	PF00248	Aldo/keto reductase family
CH55_3833	PF03372	Endonuclease/Exonuclease/phosphatase family
CH55_3834	PF01464	Transglycosylase SLT domain
CH55_3834	PF01476	LysM domain
CH55_3835	PF00753	Metallo-beta-lactamase superfamily
CH55_3835	PF16123	CH55_3835
CH55_3836	PF08241	Methyltransferase domain
CH55_3837	PF00075	RNase H
CH55_3838	PF00929	Exonuclease
CH55_384	PF07338	Protein of unknown function (DUF1471)
CH55_3840	PF02133	Permease for cytosine/purines, uracil, thiamine, allantoin
CH55_3843	PF01695	IstB-like ATP binding protein
CH55_3844	PF00665	Integrase core domain
CH55_3844	PF02796	Helix-turn-helix domain of resolvase
CH55_3846	PF05973	CH55_3846
CH55_3849	PF13481	AAA domain
CH55_385	PF13520	Amino acid permease
CH55_3850	PF08273	Zinc-binding domain of primase-helicase
CH55_3850	PF13362	Toprim domain
CH55_3851	PF10554	CH55_3851
CH55_3852	PF05930	Prophage CP4-57 regulatory protein (AlpA)
CH55_3853	PF12834	CH55_3853
CH55_3853	PF12835	Integrase
CH55_3855	PF14130	CH55_3855
CH55_3856	PF00589	Phage integrase family
CH55_3856	PF13356	Domain of unknown function (DUF4102)
CH55_3857	PF01797	Transposase IS200 like
CH55_3858	PF01668	SmpB protein
CH55_3859	PF03364	Polyketide cyclase / dehydrase and lipid transport
CH55_3860	PF03658	RnfH family Ubiquitin
CH55_3861	PF04355	SmpA / OmlA family
CH55_3862	PF02463	RecF/RecN/SMC N terminal domain
CH55_3863	PF01513	ATP-NAD kinase
CH55_3864	PF01025	GrpE
CH55_3865	PF00285	Citrate synthase
CH55_3866	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
CH55_3868	PF00890	FAD binding domain
CH55_3868	PF02910	Fumarate reductase flavoprotein C-term
CH55_3869	PF13085	2Fe-2S iron-sulfur cluster binding domain
CH55_3869	PF13534	4Fe-4S dicluster domain
CH55_387	PF00072	Response regulator receiver domain
CH55_387	PF00486	Transcriptional regulatory protein, C terminal
CH55_3870	PF00676	Dehydrogenase E1 component
CH55_3870	PF02779	Transketolase, pyrimidine binding domain
CH55_3870	PF16078	CH55_3870
CH55_3870	PF16870	CH55_3870
CH55_3871	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
CH55_3871	PF00364	Biotin-requiring enzyme
CH55_3871	PF02817	e3 binding domain
CH55_3872	PF00549	CoA-ligase
CH55_3872	PF08442	ATP-grasp domain
CH55_3873	PF00549	CoA-ligase
CH55_3873	PF02629	CoA binding domain
CH55_3874	PF01654	CH55_3874
CH55_3875	PF02322	CH55_3875
CH55_3876	PF08173	CH55_3876
CH55_3877	PF09600	CH55_3877
CH55_3878	PF03061	Thioesterase superfamily
CH55_3879	PF01618	CH55_3879
CH55_388	PF00512	His Kinase A (phospho-acceptor) domain
CH55_388	PF00672	HAMP domain
CH55_388	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_3880	PF02472	Biopolymer transport protein ExbD/TolR
CH55_3881	PF06519	TolA C-terminal
CH55_3882	PF04052	TolB amino-terminal domain
CH55_3882	PF07676	WD40-like Beta Propeller Repeat
CH55_3883	PF00691	OmpA family
CH55_3884	PF13174	Tetratricopeptide repeat
CH55_3884	PF13432	Tetratricopeptide repeat
CH55_3884	PF16331	CH55_3884
CH55_3888	PF02445	Quinolinate synthetase A protein
CH55_3889	PF04973	CH55_3889
CH55_389	PF02074	Carboxypeptidase Taq (M32) metallopeptidase
CH55_3890	PF01545	Cation efflux family
CH55_3892	PF00793	DAHP synthetase I family
CH55_3893	PF00300	Histidine phosphatase superfamily (branch 1)
CH55_3894	PF07769	CH55_3894
CH55_3895	PF01263	Aldose 1-epimerase
CH55_3897	PF00288	GHMP kinases N terminal domain
CH55_3897	PF08544	GHMP kinases C terminal
CH55_3897	PF10509	Galactokinase galactose-binding signature
CH55_3898	PF01087	Galactose-1-phosphate uridyl transferase, N-terminal domain
CH55_3898	PF02744	Galactose-1-phosphate uridyl transferase, C-terminal domain
CH55_3899	PF16363	CH55_3899
CH55_39	PF12850	Calcineurin-like phosphoesterase superfamily domain
CH55_390	PF01797	Transposase IS200 like
CH55_3900	PF02517	CAAX protease self-immunity
CH55_3902	PF00005	ABC transporter
CH55_3903	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_3903	PF03459	TOBE domain
CH55_3904	PF10766	Protein of unknown function (DUF2592)
CH55_3905	PF13531	Bacterial extracellular solute-binding protein
CH55_3906	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_3907	PF00005	ABC transporter
CH55_3907	PF03459	TOBE domain
CH55_3908	PF08282	haloacid dehalogenase-like hydrolase
CH55_3909	PF10282	Lactonase, 7-bladed beta-propeller
CH55_391	PF03497	Anthrax toxin LF subunit
CH55_3910	PF00202	Aminotransferase class-III
CH55_3911	PF04055	Radical SAM superfamily
CH55_3911	PF06968	Biotin and Thiamin Synthesis associated domain
CH55_3912	PF00155	Aminotransferase class I and II
CH55_3913	PF08241	Methyltransferase domain
CH55_3914	PF13500	AAA domain
CH55_3915	PF00005	ABC transporter
CH55_3916	PF00271	Helicase conserved C-terminal domain
CH55_3916	PF02151	UvrB/uvrC motif
CH55_3916	PF04851	Type III restriction enzyme, res subunit
CH55_3916	PF12344	Ultra-violet resistance protein B
CH55_3917	PF09905	Uncharacterized conserved protein (DUF2132)
CH55_3918	PF01933	Uncharacterised protein family UPF0052
CH55_3920	PF04055	Radical SAM superfamily
CH55_3920	PF06463	Molybdenum Cofactor Synthesis C
CH55_3920	PF13353	4Fe-4S single cluster domain
CH55_3921	PF01967	MoaC family
CH55_3922	PF02597	ThiS family
CH55_3923	PF02391	MoaE protein
CH55_3924	PF01027	Inhibitor of apoptosis-promoting Bax1
CH55_3925	PF01797	Transposase IS200 like
CH55_3926	PF00732	GMC oxidoreductase
CH55_3926	PF05199	GMC oxidoreductase
CH55_3927	PF00171	Aldehyde dehydrogenase family
CH55_3928	PF00440	Bacterial regulatory proteins, tetR family
CH55_3928	PF13977	Bacterial transcriptional repressor
CH55_3929	PF02028	BCCT family transporter
CH55_393	PF01292	Prokaryotic cytochrome b561
CH55_3930	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_3930	PF03466	LysR substrate binding domain
CH55_3931	PF00892	EamA-like transporter family
CH55_3932	PF01048	Phosphorylase superfamily
CH55_3933	PF03825	CH55_3933
CH55_3934	PF01797	Transposase IS200 like
CH55_3935	PF03825	CH55_3935
CH55_3936	PF13801	Heavy-metal resistance
CH55_3937	PF00512	His Kinase A (phospho-acceptor) domain
CH55_3937	PF00989	PAS fold
CH55_3937	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_3937	PF17203	CH55_3937
CH55_3938	PF00072	Response regulator receiver domain
CH55_3938	PF00158	Sigma-54 interaction domain
CH55_3938	PF02954	Bacterial regulatory protein, Fis family
CH55_3939	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
CH55_3940	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_3940	PF03466	LysR substrate binding domain
CH55_3941	PF07110	EthD domain
CH55_3942	PF12698	ABC-2 family transporter protein
CH55_3943	PF12698	ABC-2 family transporter protein
CH55_3944	PF00005	ABC transporter
CH55_3945	PF16576	CH55_3945
CH55_3946	PF00440	Bacterial regulatory proteins, tetR family
CH55_3946	PF09209	Domain of unknown function (DUF1956)
CH55_3947	PF00270	DEAD/DEAH box helicase
CH55_3947	PF00271	Helicase conserved C-terminal domain
CH55_3949	PF13358	DDE superfamily endonuclease
CH55_395	PF00089	Trypsin
CH55_3954	PF00872	CH55_3954
CH55_3955	PF00872	CH55_3955
CH55_3956	PF00872	CH55_3956
CH55_3958	PF06092	CH55_3958
CH55_3959	PF08543	Phosphomethylpyrimidine kinase
CH55_396	PF01381	Helix-turn-helix
CH55_3963	PF08816	Inhibitor of vertebrate lysozyme (Ivy)
CH55_3964	PF00781	Diacylglycerol kinase catalytic domain
CH55_3965	PF01136	CH55_3965
CH55_3965	PF16325	CH55_3965
CH55_3966	PF07411	Domain of unknown function (DUF1508)
CH55_3967	PF00072	Response regulator receiver domain
CH55_3967	PF00486	Transcriptional regulatory protein, C terminal
CH55_3968	PF00512	His Kinase A (phospho-acceptor) domain
CH55_3968	PF00672	HAMP domain
CH55_3969	PF07690	Major Facilitator Superfamily
CH55_397	PF05973	CH55_397
CH55_3970	PF00873	AcrB/AcrD/AcrF family
CH55_3971	PF00873	AcrB/AcrD/AcrF family
CH55_3972	PF13437	HlyD family secretion protein
CH55_3972	PF13533	Biotin-lipoyl like
CH55_3973	PF00005	ABC transporter
CH55_3973	PF08402	TOBE domain
CH55_3974	PF00155	Aminotransferase class I and II
CH55_3974	PF00392	Bacterial regulatory proteins, gntR family
CH55_3975	PF00202	Aminotransferase class-III
CH55_3976	PF13416	Bacterial extracellular solute-binding protein
CH55_3977	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_3978	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_3979	PF00012	Hsp70 protein
CH55_398	PF00270	DEAD/DEAH box helicase
CH55_398	PF00271	Helicase conserved C-terminal domain
CH55_398	PF04408	Helicase associated domain (HA2)
CH55_398	PF07717	Oligonucleotide/oligosaccharide-binding (OB)-fold
CH55_398	PF11898	CH55_398
CH55_3980	PF01769	Divalent cation transporter
CH55_3981	PF00571	CBS domain
CH55_3981	PF03448	MgtE intracellular N domain
CH55_3982	PF02541	Ppx/GppA phosphatase family
CH55_3983	PF02503	Polyphosphate kinase middle domain
CH55_3983	PF13089	Polyphosphate kinase N-terminal domain
CH55_3983	PF13090	Polyphosphate kinase C-terminal domain
CH55_3986	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_3987	PF00005	ABC transporter
CH55_3988	PF03692	CH55_3988
CH55_399	PF02525	Flavodoxin-like fold
CH55_3991	PF13302	Acetyltransferase (GNAT) domain
CH55_3992	PF00551	Formyl transferase
CH55_3993	PF00586	AIR synthase related protein, N-terminal domain
CH55_3993	PF02769	AIR synthase related protein, C-terminal domain
CH55_3994	PF14681	Uracil phosphoribosyltransferase
CH55_3995	PF01797	Transposase IS200 like
CH55_3996	PF00308	Bacterial dnaA  protein
CH55_3997	PF03960	ArsC family
CH55_3998	PF01435	Peptidase family M48
CH55_3998	PF07720	Tetratricopeptide repeat
CH55_3998	PF14559	Tetratricopeptide repeat
CH55_3999	PF01594	CH55_3999
CH55_4	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
CH55_40	PF00293	NUDIX domain
CH55_400	PF04198	Putative sugar-binding domain
CH55_4002	PF00578	AhpC/TSA family
CH55_4003	PF13740	ACT domain
CH55_4004	PF00701	Dihydrodipicolinate synthetase family
CH55_4005	PF06804	NlpB/DapX lipoprotein
CH55_4006	PF01797	Transposase IS200 like
CH55_4007	PF01797	Transposase IS200 like
CH55_4008	PF01259	SAICAR synthetase
CH55_4009	PF04228	CH55_4009
CH55_401	PF01232	Mannitol dehydrogenase Rossmann domain
CH55_401	PF08125	Mannitol dehydrogenase C-terminal domain
CH55_4010	PF04228	CH55_4010
CH55_4011	PF04284	CH55_4011
CH55_4012	PF05127	Helicase
CH55_4012	PF08351	Domain of unknown function (DUF1726)
CH55_4012	PF13718	GNAT acetyltransferase 2
CH55_4012	PF17176	CH55_4012
CH55_4013	PF13980	CH55_4013
CH55_4014	PF02557	D-alanyl-D-alanine carboxypeptidase
CH55_4015	PF01546	Peptidase family M20/M25/M40
CH55_4015	PF07687	Peptidase dimerisation domain
CH55_4016	PF03960	ArsC family
CH55_4017	PF12688	Tetratrico peptide repeat
CH55_4018	PF13416	Bacterial extracellular solute-binding protein
CH55_4019	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_402	PF07027	CH55_402
CH55_4020	PF00005	ABC transporter
CH55_4021	PF00884	Sulfatase
CH55_4022	PF04055	Radical SAM superfamily
CH55_4022	PF13353	4Fe-4S single cluster domain
CH55_4023	PF04307	CH55_4023
CH55_4026	PF00873	AcrB/AcrD/AcrF family
CH55_4027	PF00873	AcrB/AcrD/AcrF family
CH55_4028	PF09904	Winged helix-turn helix
CH55_4029	PF00072	Response regulator receiver domain
CH55_4029	PF00196	Bacterial regulatory proteins, luxR family
CH55_403	PF13617	CH55_403
CH55_4030	PF12838	4Fe-4S dicluster domain
CH55_4030	PF13187	4Fe-4S dicluster domain
CH55_4031	PF03927	NapD protein
CH55_4032	PF00384	Molybdopterin oxidoreductase
CH55_4032	PF01568	Molydopterin dinucleotide binding domain
CH55_4032	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
CH55_4032	PF10518	TAT (twin-arginine translocation) pathway signal sequence
CH55_4033	PF03892	Nitrate reductase cytochrome c-type subunit (NapB)
CH55_4034	PF03264	NapC/NirT cytochrome c family, N-terminal region
CH55_4035	PF00293	NUDIX domain
CH55_4036	PF00390	Malic enzyme, N-terminal domain
CH55_4036	PF01515	Phosphate acetyl/butaryl transferase
CH55_4036	PF03949	Malic enzyme, NAD binding domain
CH55_4037	PF02639	CH55_4037
CH55_4038	PF01218	Coproporphyrinogen III oxidase
CH55_4039	PF00583	Acetyltransferase (GNAT) family
CH55_404	PF11739	CH55_404
CH55_4042	PF03212	Pertactin
CH55_4042	PF03797	Autotransporter beta-domain
CH55_4043	PF04076	Bacterial OB fold (BOF) protein
CH55_4045	PF06572	Protein of unknown function (DUF1131)
CH55_4046	PF04261	Dyp-type peroxidase family
CH55_4047	PF00701	Dihydrodipicolinate synthetase family
CH55_4048	PF04131	Putative N-acetylmannosamine-6-phosphate epimerase
CH55_4049	PF12468	Type III secretion system leucine rich repeat protein
CH55_4049	PF13855	Leucine rich repeat
CH55_405	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
CH55_405	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
CH55_4050	PF00480	ROK family
CH55_4051	PF04074	Domain of unknown function (DUF386)
CH55_4052	PF01380	SIS domain
CH55_4052	PF01418	Helix-turn-helix domain, rpiR family
CH55_4053	PF07690	Major Facilitator Superfamily
CH55_4054	PF13531	Bacterial extracellular solute-binding protein
CH55_4055	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_4056	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_4057	PF00005	ABC transporter
CH55_4058	PF00291	Pyridoxal-phosphate dependent enzyme
CH55_406	PF03724	META domain
CH55_4060	PF00072	Response regulator receiver domain
CH55_4060	PF00486	Transcriptional regulatory protein, C terminal
CH55_4061	PF00512	His Kinase A (phospho-acceptor) domain
CH55_4061	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_4062	PF00092	von Willebrand factor type A domain
CH55_4063	PF00155	Aminotransferase class I and II
CH55_4064	PF01321	Creatinase/Prolidase N-terminal domain
CH55_4065	PF00557	Metallopeptidase family M24
CH55_4065	PF01321	Creatinase/Prolidase N-terminal domain
CH55_4066	PF11755	CH55_4066
CH55_4068	PF00581	Rhodanese-like domain
CH55_4068	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
CH55_4068	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH55_4069	PF00005	ABC transporter
CH55_4069	PF02687	CH55_4069
CH55_4069	PF12704	MacB-like periplasmic core domain
CH55_4070	PF16576	CH55_4070
CH55_4071	PF00072	Response regulator receiver domain
CH55_4071	PF00486	Transcriptional regulatory protein, C terminal
CH55_4072	PF00512	His Kinase A (phospho-acceptor) domain
CH55_4072	PF00672	HAMP domain
CH55_4072	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_4074	PF01695	IstB-like ATP binding protein
CH55_4076	PF00665	Integrase core domain
CH55_4076	PF02796	Helix-turn-helix domain of resolvase
CH55_4077	PF01797	Transposase IS200 like
CH55_4078	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
CH55_4079	PF00391	PEP-utilising enzyme, mobile domain
CH55_4079	PF02896	PEP-utilising enzyme, TIM barrel domain
CH55_4079	PF05524	PEP-utilising enzyme, N-terminal
CH55_408	PF02308	CH55_408
CH55_4080	PF00381	PTS HPr component phosphorylation site
CH55_4081	PF00291	Pyridoxal-phosphate dependent enzyme
CH55_4082	PF07264	Etoposide-induced protein 2
CH55_4083	PF04354	ZipA, C-terminal FtsZ-binding domain
CH55_4084	PF00533	BRCA1 C Terminus (BRCT) domain
CH55_4084	PF01653	NAD-dependent DNA ligase adenylation domain
CH55_4084	PF03119	NAD-dependent DNA ligase C4 zinc finger domain
CH55_4084	PF03120	NAD-dependent DNA ligase OB-fold domain
CH55_4084	PF12826	Helix-hairpin-helix motif
CH55_4084	PF14520	Helix-hairpin-helix domain
CH55_4085	PF12843	CH55_4085
CH55_4086	PF14282	CH55_4086
CH55_4087	PF06042	Bacterial protein of unknown function (DUF925)
CH55_409	PF00893	Small Multidrug Resistance protein
CH55_4091	PF01797	Transposase IS200 like
CH55_4092	PF00749	tRNA synthetases class I (E and Q), catalytic domain
CH55_4096	PF01773	Na+ dependent nucleoside transporter N-terminus
CH55_4096	PF07662	Na+ dependent nucleoside transporter C-terminus
CH55_4096	PF07670	Nucleoside recognition
CH55_4097	PF01566	CH55_4097
CH55_4098	PF10697	CH55_4098
CH55_4099	PF00248	Aldo/keto reductase family
CH55_41	PF03611	CH55_41
CH55_410	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
CH55_410	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
CH55_410	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CH55_410	PF10371	Domain of unknown function
CH55_410	PF12838	4Fe-4S dicluster domain
CH55_410	PF17147	CH55_410
CH55_4100	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_4100	PF03466	LysR substrate binding domain
CH55_4101	PF05232	CH55_4101
CH55_4102	PF02685	Glucokinase
CH55_4103	PF07350	Protein of unknown function (DUF1479)
CH55_4104	PF00155	Aminotransferase class I and II
CH55_4105	PF01292	Prokaryotic cytochrome b561
CH55_4106	PF15970	CH55_4106
CH55_4107	PF03783	Curli production assembly/transport component CsgG
CH55_4108	PF16068	CH55_4108
CH55_4109	PF05643	Putative bacterial lipoprotein (DUF799)
CH55_411	PF01171	PP-loop family
CH55_4110	PF00037	4Fe-4S binding domain
CH55_4110	PF12838	4Fe-4S dicluster domain
CH55_4111	PF02613	Nitrate reductase delta subunit
CH55_4112	PF04976	CH55_4112
CH55_4113	PF12800	4Fe-4S binding domain
CH55_4113	PF13247	4Fe-4S dicluster domain
CH55_4114	PF00384	Molybdopterin oxidoreductase
CH55_4114	PF01568	Molydopterin dinucleotide binding domain
CH55_4114	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
CH55_4115	PF13988	CH55_4115
CH55_4116	PF05638	Protein of unknown function (DUF796)
CH55_4117	PF09900	CH55_4117
CH55_4118	PF00005	ABC transporter
CH55_4119	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_4120	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_4121	PF13343	Bacterial extracellular solute-binding protein
CH55_4122	PF13406	Transglycosylase SLT domain
CH55_4123	PF00196	Bacterial regulatory proteins, luxR family
CH55_4124	PF08786	Domain of unknown function (DUF1795)
CH55_4125	PF00691	OmpA family
CH55_4127	PF11397	CH55_4127
CH55_4128	PF00419	Fimbrial protein
CH55_4129	PF06812	CH55_4129
CH55_413	PF07859	alpha/beta hydrolase fold
CH55_4130	PF06996	CH55_4130
CH55_4131	PF05947	CH55_4131
CH55_4132	PF00004	ATPase family associated with various cellular activities (AAA)
CH55_4132	PF02861	Clp amino terminal domain
CH55_4132	PF07724	AAA domain (Cdc48 subfamily)
CH55_4132	PF10431	C-terminal, D2-small domain, of ClpB protein
CH55_4133	PF16970	CH55_4133
CH55_4134	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH55_4134	PF02753	Pili assembly chaperone PapD, C-terminal domain
CH55_4135	PF00577	Outer membrane usher protein
CH55_4135	PF13954	PapC N-terminal domain
CH55_4136	PF00872	CH55_4136
CH55_4137	PF00872	CH55_4137
CH55_4138	PF00577	Outer membrane usher protein
CH55_4138	PF13953	PapC C-terminal domain
CH55_4139	PF00419	Fimbrial protein
CH55_414	PF13411	MerR HTH family regulatory protein
CH55_4140	PF05591	CH55_4140
CH55_4141	PF05943	CH55_4141
CH55_4142	PF05638	Protein of unknown function (DUF796)
CH55_4143	PF12790	Type VI secretion lipoprotein
CH55_4144	PF05936	CH55_4144
CH55_4145	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
CH55_4146	PF00665	Integrase core domain
CH55_4146	PF02796	Helix-turn-helix domain of resolvase
CH55_4148	PF01695	IstB-like ATP binding protein
CH55_4149	PF00691	OmpA family
CH55_4149	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
CH55_415	PF01544	CorA-like Mg2+ transporter protein
CH55_4150	PF06744	CH55_4150
CH55_4150	PF06761	CH55_4150
CH55_4150	PF14331	CH55_4150
CH55_4151	PF05954	Phage late control gene D protein (GPD)
CH55_4152	PF05488	PAAR motif
CH55_4154	PF07024	ImpE protein
CH55_4155	PF04965	Gene 25-like lysozyme
CH55_4157	PF03831	PhnA protein
CH55_4157	PF08274	PhnA Zinc-Ribbon
CH55_4158	PF09972	CH55_4158
CH55_4159	PF04011	LemA family
CH55_416	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH55_4162	PF00005	ABC transporter
CH55_4163	PF03379	CH55_4163
CH55_4164	PF01578	CH55_4164
CH55_4165	PF04995	CH55_4165
CH55_4166	PF03100	CcmE
CH55_4167	PF01578	CH55_4167
CH55_4167	PF16327	CH55_4167
CH55_417	PF00246	Zinc carboxypeptidase
CH55_4174	PF01367	5'-3' exonuclease, C-terminal SAM fold
CH55_4174	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
CH55_4176	PF00154	recA bacterial DNA recombination protein
CH55_4178	PF01145	SPFH domain / Band 7 family
CH55_4179	PF10765	Protein of unknown function (DUF2591)
CH55_418	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
CH55_418	PF13378	Enolase C-terminal domain-like
CH55_4185	PF01051	Initiator Replication protein
CH55_4188	PF09084	NMT1/THI5 like
CH55_4189	PF00149	Calcineurin-like phosphoesterase
CH55_419	PF08534	Redoxin
CH55_4191	PF13476	AAA domain
CH55_4194	PF01797	Transposase IS200 like
CH55_4195	PF01797	Transposase IS200 like
CH55_4198	PF03614	CH55_4198
CH55_42	PF00872	CH55_42
CH55_420	PF01797	Transposase IS200 like
CH55_4201	PF00270	DEAD/DEAH box helicase
CH55_4201	PF00271	Helicase conserved C-terminal domain
CH55_4202	PF02195	ParB-like nuclease domain
CH55_4203	PF02195	ParB-like nuclease domain
CH55_4204	PF00005	ABC transporter
CH55_4209	PF03237	Terminase-like family
CH55_421	PF00158	Sigma-54 interaction domain
CH55_421	PF00989	PAS fold
CH55_4214	PF02368	Bacterial Ig-like domain (group 2)
CH55_422	PF09722	CH55_422
CH55_4220	PF02368	Bacterial Ig-like domain (group 2)
CH55_4223	PF09718	CH55_4223
CH55_4224	PF05939	CH55_4224
CH55_4225	PF05100	CH55_4225
CH55_4226	PF00877	NlpC/P60 family
CH55_4226	PF14464	Prokaryotic homologs of the JAB domain
CH55_4228	PF09327	CH55_4228
CH55_4228	PF12421	CH55_4228
CH55_4228	PF13550	CH55_4228
CH55_4229	PF14301	CH55_4229
CH55_423	PF08808	CH55_423
CH55_4230	PF03335	Phage tail fibre repeat
CH55_4230	PF03406	CH55_4230
CH55_4230	PF07484	Phage Tail Collar Domain
CH55_4232	PF02413	CH55_4232
CH55_4233	PF01695	IstB-like ATP binding protein
CH55_4234	PF00665	Integrase core domain
CH55_4234	PF02796	Helix-turn-helix domain of resolvase
CH55_4238	PF13643	CH55_4238
CH55_4239	PF00872	CH55_4239
CH55_424	PF05128	CH55_424
CH55_4240	PF01548	CH55_4240
CH55_4240	PF02371	CH55_4240
CH55_4241	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
CH55_4243	PF13091	PLD-like domain
CH55_4245	PF04754	CH55_4245
CH55_4246	PF00239	Resolvase, N terminal domain
CH55_4247	PF05016	Plasmid stabilisation system protein
CH55_4248	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
CH55_4249	PF13614	AAA domain
CH55_425	PF04317	CH55_425
CH55_4250	PF02195	ParB-like nuclease domain
CH55_4250	PF08775	ParB family
CH55_4251	PF13191	AAA ATPase domain
CH55_4253	PF01555	DNA methylase
CH55_4255	PF07128	CH55_4255
CH55_4257	PF07275	Antirestriction protein (ArdA)
CH55_4258	PF06006	Bacterial protein of unknown function (DUF905)
CH55_4259	PF02195	ParB-like nuclease domain
CH55_426	PF09584	CH55_426
CH55_4260	PF00665	Integrase core domain
CH55_4260	PF02796	Helix-turn-helix domain of resolvase
CH55_4261	PF01695	IstB-like ATP binding protein
CH55_4262	PF01068	ATP dependent DNA ligase domain
CH55_4267	PF06445	GyrI-like small molecule binding domain
CH55_4267	PF12833	Helix-turn-helix domain
CH55_4269	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH55_4269	PF02753	Pili assembly chaperone PapD, C-terminal domain
CH55_427	PF04024	CH55_427
CH55_4270	PF00577	Outer membrane usher protein
CH55_4270	PF13953	PapC C-terminal domain
CH55_4271	PF09255	Caf1 Capsule antigen
CH55_4273	PF00589	Phage integrase family
CH55_4275	PF06213	CH55_4275
CH55_4275	PF11775	CH55_4275
CH55_4276	PF07728	AAA domain (dynein-related subfamily)
CH55_4277	PF02811	PHP domain
CH55_4277	PF07733	Bacterial DNA polymerase III alpha subunit
CH55_4278	PF00263	CH55_4278
CH55_4278	PF03958	Bacterial type II/III secretion system short domain
CH55_428	PF06667	CH55_428
CH55_4280	PF03958	Bacterial type II/III secretion system short domain
CH55_4281	PF05932	Tir chaperone protein (CesT) family
CH55_4282	PF12833	Helix-turn-helix domain
CH55_4283	PF02311	AraC-like ligand binding domain
CH55_4284	PF09619	Type III secretion system lipoprotein chaperone (YscW)
CH55_4285	PF01312	FlhB HrpN YscU SpaS Family
CH55_4286	PF01311	CH55_4286
CH55_4287	PF01313	CH55_4287
CH55_4288	PF00813	CH55_4288
CH55_4289	PF01052	Surface presentation of antigens (SPOA)
CH55_429	PF04012	CH55_429
CH55_4290	PF02120	Flagellar hook-length control protein FliK
CH55_4291	PF07321	Type III secretion protein YscO
CH55_4292	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CH55_4293	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CH55_4293	PF02874	ATP synthase alpha/beta family, beta-barrel domain
CH55_4294	PF07201	HrpJ-like domain
CH55_4295	PF09059	TyeA
CH55_4297	PF09474	CH55_4297
CH55_4299	PF00771	FHIPEP family
CH55_43	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
CH55_430	PF00158	Sigma-54 interaction domain
CH55_430	PF02954	Bacterial regulatory protein, Fis family
CH55_4300	PF09621	CH55_4300
CH55_4301	PF07216	CH55_4301
CH55_4302	PF04792	V antigen (LcrV) protein
CH55_4303	PF07720	Tetratricopeptide repeat
CH55_4304	PF04888	CH55_4304
CH55_4305	PF05844	YopD protein
CH55_4308	PF12468	Type III secretion system leucine rich repeat protein
CH55_4309	PF00872	CH55_4309
CH55_431	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH55_4312	PF05932	Tir chaperone protein (CesT) family
CH55_4313	PF03543	Yersinia/Haemophilus virulence surface antigen
CH55_4315	PF05818	CH55_4315
CH55_4316	PF01527	Transposase
CH55_4317	PF13276	CH55_4317
CH55_4318	PF13683	CH55_4318
CH55_432	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_4320	PF00376	MerR family regulatory protein
CH55_4320	PF13614	AAA domain
CH55_4321	PF02195	ParB-like nuclease domain
CH55_4323	PF03693	Uncharacterised protein family (UPF0156)
CH55_4324	PF05016	Plasmid stabilisation system protein
CH55_4325	PF03545	Yersinia virulence determinant (YopE)
CH55_4325	PF09020	YopE, N terminal
CH55_4326	PF05932	Tir chaperone protein (CesT) family
CH55_4327	PF13683	CH55_4327
CH55_4328	PF00665	Integrase core domain
CH55_4329	PF01695	IstB-like ATP binding protein
CH55_433	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_433	PF12911	CH55_433
CH55_4330	PF05932	Tir chaperone protein (CesT) family
CH55_4331	PF13276	CH55_4331
CH55_4331	PF13683	CH55_4331
CH55_4332	PF01527	Transposase
CH55_4335	PF00239	Resolvase, N terminal domain
CH55_4335	PF02796	Helix-turn-helix domain of resolvase
CH55_4336	PF13700	CH55_4336
CH55_4338	PF01526	CH55_4338
CH55_434	PF00005	ABC transporter
CH55_434	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CH55_4341	PF03895	YadA-like C-terminal region
CH55_4341	PF05658	Head domain of trimeric autotransporter adhesin
CH55_4341	PF05662	Coiled stalk of trimeric autotransporter adhesin
CH55_4345	PF01527	Transposase
CH55_4346	PF00665	Integrase core domain
CH55_4347	PF13276	CH55_4347
CH55_4349	PF10723	Replication regulatory protein RepB
CH55_435	PF00005	ABC transporter
CH55_4351	PF02387	CH55_4351
CH55_4354	PF13683	CH55_4354
CH55_4357	PF00069	Protein kinase domain
CH55_4357	PF09632	Rac1-binding domain
CH55_4358	PF09632	Rac1-binding domain
CH55_4359	PF03421	CH55_4359
CH55_4360	PF13683	CH55_4360
CH55_4361	PF00102	Protein-tyrosine phosphatase
CH55_4361	PF09013	YopH, N-terminal
CH55_4362	PF13683	CH55_4362
CH55_4364	PF01527	Transposase
CH55_4365	PF09013	YopH, N-terminal
CH55_4366	PF02108	CH55_4366
CH55_4367	PF06578	CH55_4367
CH55_4368	PF01514	Secretory protein of YscJ/FliF family
CH55_4369	PF17001	CH55_4369
CH55_4370	PF09025	YopR Core
CH55_4371	PF09477	Bacterial type II secretion system chaperone protein (type_III_yscG)
CH55_4372	PF09392	Type III secretion needle MxiH like
CH55_4373	PF08988	Protein of unknown function (DUF1895)
CH55_4374	PF16693	CH55_4374
CH55_4375	PF01815	Rop protein
CH55_4376	PF01695	IstB-like ATP binding protein
CH55_4378	PF00665	Integrase core domain
CH55_4378	PF02796	Helix-turn-helix domain of resolvase
CH55_4379	PF05973	CH55_4379
CH55_438	PF00854	POT family
CH55_4380	PF13744	Helix-turn-helix domain
CH55_4381	PF01278	Omptin family
CH55_4383	PF16754	CH55_4383
CH55_4384	PF16765	CH55_4384
CH55_439	PF06930	CH55_439
CH55_44	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
CH55_440	PF11656	CH55_440
CH55_441	PF00043	Glutathione S-transferase, C-terminal domain
CH55_441	PF02798	Glutathione S-transferase, N-terminal domain
CH55_442	PF08543	Phosphomethylpyrimidine kinase
CH55_443	PF00579	tRNA synthetases class I (W and Y)
CH55_443	PF01479	S4 domain
CH55_444	PF01243	Pyridoxamine 5'-phosphate oxidase
CH55_444	PF10590	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
CH55_445	PF09864	Membrane-bound lysozyme-inhibitor of c-type lysozyme
CH55_446	PF03702	Uncharacterised protein family (UPF0075)
CH55_447	PF05433	CH55_447
CH55_448	PF01047	MarR family
CH55_449	PF00884	Sulfatase
CH55_449	PF08019	CH55_449
CH55_45	PF00356	Bacterial regulatory proteins, lacI family
CH55_45	PF13377	Periplasmic binding protein-like domain
CH55_450	PF00440	Bacterial regulatory proteins, tetR family
CH55_450	PF16925	CH55_450
CH55_451	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
CH55_453	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
CH55_454	PF00929	Exonuclease
CH55_455	PF00462	Glutaredoxin
CH55_457	PF00877	NlpC/P60 family
CH55_458	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
CH55_458	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
CH55_46	PF01515	Phosphate acetyl/butaryl transferase
CH55_46	PF07085	DRTGG domain
CH55_46	PF13500	AAA domain
CH55_460	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_460	PF03466	LysR substrate binding domain
CH55_461	PF00356	Bacterial regulatory proteins, lacI family
CH55_462	PF07690	Major Facilitator Superfamily
CH55_463	PF02353	Mycolic acid cyclopropane synthetase
CH55_464	PF00677	Lumazine binding domain
CH55_465	PF01554	MatE
CH55_468	PF00224	Pyruvate kinase, barrel domain
CH55_468	PF02887	Pyruvate kinase, alpha/beta domain
CH55_469	PF04728	Lipoprotein leucine-zipper
CH55_47	PF00871	Acetokinase family
CH55_471	PF00665	Integrase core domain
CH55_471	PF02796	Helix-turn-helix domain of resolvase
CH55_472	PF01695	IstB-like ATP binding protein
CH55_473	PF01695	IstB-like ATP binding protein
CH55_474	PF03734	L,D-transpeptidase catalytic domain
CH55_475	PF02657	Fe-S metabolism associated domain
CH55_476	PF00266	Aminotransferase class-V
CH55_477	PF01458	Uncharacterized protein family (UPF0051)
CH55_478	PF00005	ABC transporter
CH55_479	PF01458	Uncharacterized protein family (UPF0051)
CH55_48	PF04217	CH55_48
CH55_480	PF01521	Iron-sulphur cluster biosynthesis
CH55_481	PF03061	Thioesterase superfamily
CH55_482	PF01565	FAD binding domain
CH55_482	PF02913	FAD linked oxidases, C-terminal domain
CH55_482	PF13183	4Fe-4S dicluster domain
CH55_483	PF01594	CH55_483
CH55_484	PF00391	PEP-utilising enzyme, mobile domain
CH55_484	PF02896	PEP-utilising enzyme, TIM barrel domain
CH55_485	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
CH55_486	PF03618	CH55_486
CH55_487	PF00793	DAHP synthetase I family
CH55_488	PF02696	CH55_488
CH55_489	PF02696	CH55_489
CH55_49	PF03887	YfbU domain
CH55_490	PF03099	Biotin/lipoate A/B protein ligase family
CH55_490	PF10437	Bacterial lipoate protein ligase C-terminus
CH55_491	PF00877	NlpC/P60 family
CH55_493	PF00892	EamA-like transporter family
CH55_494	PF02366	CH55_494
CH55_495	PF01522	Polysaccharide deacetylase
CH55_496	PF00551	Formyl transferase
CH55_496	PF01370	NAD dependent epimerase/dehydratase family
CH55_496	PF02911	Formyl transferase, C-terminal domain
CH55_497	PF00535	Glycosyl transferase family 2
CH55_498	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
CH55_499	PF00005	ABC transporter
CH55_5	PF04175	Protein of unknown function (DUF406)
CH55_50	PF13419	Haloacid dehalogenase-like hydrolase
CH55_500	PF00255	Glutathione peroxidase
CH55_501	PF01032	FecCD transport family
CH55_502	PF10697	CH55_502
CH55_503	PF00216	Bacterial DNA-binding protein
CH55_504	PF01588	Putative tRNA binding domain
CH55_504	PF03147	Ferredoxin-fold anticodon binding domain
CH55_504	PF03483	B3/4 domain
CH55_504	PF03484	tRNA synthetase B5 domain
CH55_505	PF01409	tRNA synthetases class II core domain (F)
CH55_505	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
CH55_506	PF00453	Ribosomal protein L20
CH55_507	PF01632	Ribosomal protein L35
CH55_508	PF00707	Translation initiation factor IF-3, C-terminal domain
CH55_509	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
CH55_509	PF02824	TGS domain
CH55_509	PF03129	Anticodon binding domain
CH55_509	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
CH55_51	PF02080	TrkA-C domain
CH55_51	PF03600	Citrate transporter
CH55_510	PF13619	CH55_510
CH55_512	PF01914	CH55_512
CH55_513	PF01464	Transglycosylase SLT domain
CH55_514	PF01297	Periplasmic solute binding protein family
CH55_515	PF00005	ABC transporter
CH55_516	PF00950	CH55_516
CH55_517	PF00950	CH55_517
CH55_518	PF03881	Fructosamine kinase
CH55_519	PF14002	CH55_519
CH55_52	PF13023	HD domain
CH55_520	PF13419	Haloacid dehalogenase-like hydrolase
CH55_521	PF00872	CH55_521
CH55_522	PF07883	Cupin domain
CH55_523	PF04962	KduI/IolB family
CH55_524	PF13561	Enoyl-(Acyl carrier protein) reductase
CH55_525	PF06917	Periplasmic pectate lyase
CH55_526	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_527	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_528	PF00005	ABC transporter
CH55_529	PF01547	Bacterial extracellular solute-binding protein
CH55_53	PF00155	Aminotransferase class I and II
CH55_530	PF06178	Oligogalacturonate-specific porin protein (KdgM)
CH55_531	PF04307	CH55_531
CH55_532	PF00375	Sodium:dicarboxylate symporter family
CH55_533	PF01471	Putative peptidoglycan binding domain
CH55_533	PF01510	N-acetylmuramoyl-L-alanine amidase
CH55_534	PF01614	Bacterial transcriptional regulator
CH55_534	PF09339	IclR helix-turn-helix domain
CH55_535	PF14583	Oligogalacturonate lyase
CH55_536	PF07690	Major Facilitator Superfamily
CH55_537	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH55_537	PF02753	Pili assembly chaperone PapD, C-terminal domain
CH55_538	PF00419	Fimbrial protein
CH55_539	PF00577	Outer membrane usher protein
CH55_539	PF13953	PapC C-terminal domain
CH55_539	PF13954	PapC N-terminal domain
CH55_54	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_54	PF03466	LysR substrate binding domain
CH55_540	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH55_540	PF02753	Pili assembly chaperone PapD, C-terminal domain
CH55_541	PF16970	CH55_541
CH55_542	PF01435	Peptidase family M48
CH55_544	PF00595	PDZ domain (Also known as DHR or GLGF)
CH55_544	PF03572	Peptidase family S41
CH55_544	PF11818	CH55_544
CH55_545	PF04352	ProQ/FINO family
CH55_545	PF17516	CH55_545
CH55_546	PF13185	GAF domain
CH55_547	PF04403	CH55_547
CH55_548	PF02470	CH55_548
CH55_549	PF02470	CH55_549
CH55_55	PF00507	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
CH55_550	PF05229	CH55_550
CH55_551	PF05229	CH55_551
CH55_552	PF05229	CH55_552
CH55_553	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH55_554	PF00577	Outer membrane usher protein
CH55_554	PF13953	PapC C-terminal domain
CH55_555	PF05229	CH55_555
CH55_556	PF07351	CH55_556
CH55_557	PF04266	ASCH domain
CH55_558	PF00665	Integrase core domain
CH55_558	PF02796	Helix-turn-helix domain of resolvase
CH55_559	PF01695	IstB-like ATP binding protein
CH55_56	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
CH55_560	PF00265	Thymidine kinase
CH55_561	PF00816	H-NS histone family
CH55_562	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
CH55_562	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
CH55_562	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
CH55_563	PF00072	Response regulator receiver domain
CH55_564	PF02810	SEC-C motif
CH55_565	PF00872	CH55_565
CH55_566	PF00551	Formyl transferase
CH55_566	PF01842	ACT domain
CH55_569	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_57	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit
CH55_57	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
CH55_570	PF03372	Endonuclease/Exonuclease/phosphatase family
CH55_571	PF00293	NUDIX domain
CH55_572	PF07383	CH55_572
CH55_573	PF01131	DNA topoisomerase
CH55_573	PF01751	Toprim domain
CH55_574	PF00586	AIR synthase related protein, N-terminal domain
CH55_574	PF02769	AIR synthase related protein, C-terminal domain
CH55_575	PF00881	Nitroreductase family
CH55_576	PF01343	Peptidase family S49
CH55_577	PF00710	Asparaginase
CH55_578	PF00857	Isochorismatase family
CH55_579	PF07023	CH55_579
CH55_58	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin
CH55_580	PF01641	SelR domain
CH55_581	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CH55_581	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
CH55_582	PF01263	Aldose 1-epimerase
CH55_583	PF06629	CH55_583
CH55_584	PF06798	CH55_584
CH55_584	PF08298	PrkA AAA domain
CH55_585	PF04285	CH55_585
CH55_586	PF00892	EamA-like transporter family
CH55_587	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH55_587	PF03466	LysR substrate binding domain
CH55_588	PF02678	Pirin
CH55_588	PF05726	Pirin C-terminal cupin domain
CH55_589	PF07690	Major Facilitator Superfamily
CH55_59	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
CH55_59	PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
CH55_590	PF01266	FAD dependent oxidoreductase
CH55_591	PF04293	CH55_591
CH55_592	PF00392	Bacterial regulatory proteins, gntR family
CH55_592	PF07840	FadR C-terminal domain
CH55_593	PF06450	CH55_593
CH55_594	PF02600	Disulfide bond formation protein DsbB
CH55_597	PF00266	Aminotransferase class-V
CH55_598	PF07690	Major Facilitator Superfamily
CH55_599	PF00872	CH55_599
CH55_6	PF00108	Thiolase, N-terminal domain
CH55_6	PF02803	Thiolase, C-terminal domain
CH55_60	PF00384	Molybdopterin oxidoreductase
CH55_60	PF01568	Molydopterin dinucleotide binding domain
CH55_60	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
CH55_60	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
CH55_60	PF13510	2Fe-2S iron-sulfur cluster binding domain
CH55_600	PF02413	CH55_600
CH55_603	PF09327	CH55_603
CH55_603	PF13550	CH55_603
CH55_606	PF06805	CH55_606
CH55_608	PF13248	CH55_608
CH55_609	PF02498	CH55_609
CH55_61	PF00146	NADH dehydrogenase
CH55_611	PF03869	Arc-like DNA binding domain
CH55_613	PF00877	NlpC/P60 family
CH55_613	PF14464	Prokaryotic homologs of the JAB domain
CH55_614	PF05100	CH55_614
CH55_615	PF05939	CH55_615
CH55_616	PF06791	CH55_616
CH55_616	PF09718	CH55_616
CH55_617	PF08809	CH55_617
CH55_618	PF08748	CH55_618
CH55_619	PF02368	Bacterial Ig-like domain (group 2)
CH55_619	PF08813	CH55_619
CH55_62	PF12838	4Fe-4S dicluster domain
CH55_620	PF13554	Bacteriophage related domain of unknown function
CH55_625	PF02368	Bacterial Ig-like domain (group 2)
CH55_628	PF13264	CH55_628
CH55_63	PF00499	NADH-ubiquinone/plastoquinone oxidoreductase chain 6
CH55_631	PF00872	CH55_631
CH55_633	PF10045	CH55_633
CH55_635	PF03374	CH55_635
CH55_637	PF03245	CH55_637
CH55_638	PF00959	Phage lysozyme
CH55_64	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
CH55_642	PF02498	CH55_642
CH55_643	PF06530	CH55_643
CH55_644	PF05766	CH55_644
CH55_645	PF05772	NinB protein
CH55_646	PF02086	D12 class N6 adenine-specific DNA methyltransferase
CH55_647	PF06806	Putative excisionase (DUF1233)
CH55_648	PF01695	IstB-like ATP binding protein
CH55_65	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
CH55_65	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
CH55_650	PF00665	Integrase core domain
CH55_650	PF02796	Helix-turn-helix domain of resolvase
CH55_651	PF00589	Phage integrase family
CH55_651	PF12167	CH55_651
CH55_652	PF03692	CH55_652
CH55_653	PF01557	Fumarylacetoacetate (FAA) hydrolase family
CH55_654	PF13406	Transglycosylase SLT domain
CH55_656	PF05166	YcgL domain
CH55_657	PF03775	Septum formation inhibitor MinC, C-terminal domain
CH55_657	PF05209	Septum formation inhibitor MinC, N-terminal domain
CH55_658	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
CH55_659	PF03776	Septum formation topological specificity factor MinE
CH55_66	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
CH55_660	PF00570	HRDC domain
CH55_660	PF01612	3'-5' exonuclease
CH55_661	PF00501	AMP-binding enzyme
CH55_661	PF13193	AMP-binding enzyme C-terminal domain
CH55_662	PF03843	CH55_662
CH55_663	PF00814	Glycoprotease family
CH55_664	PF06733	DEAD_2
CH55_664	PF13307	Helicase C-terminal domain
CH55_665	PF01042	Endoribonuclease L-PSP
CH55_666	PF00893	Small Multidrug Resistance protein
CH55_667	PF00893	Small Multidrug Resistance protein
CH55_668	PF01081	KDPG and KHG aldolase
CH55_67	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
CH55_670	PF00479	Glucose-6-phosphate dehydrogenase, NAD binding domain
CH55_670	PF02781	Glucose-6-phosphate dehydrogenase, C-terminal domain
CH55_671	PF01380	SIS domain
CH55_671	PF01418	Helix-turn-helix domain, rpiR family
CH55_672	PF00224	Pyruvate kinase, barrel domain
CH55_672	PF02887	Pyruvate kinase, alpha/beta domain
CH55_673	PF03279	CH55_673
CH55_674	PF01551	Peptidase family M23
CH55_674	PF04225	Opacity-associated protein A LysM-like domain
CH55_674	PF08525	CH55_674
CH55_675	PF01297	Periplasmic solute binding protein family
CH55_676	PF00005	ABC transporter
CH55_677	PF00950	CH55_677
CH55_678	PF05491	Holliday junction DNA helicase ruvB C-terminus
CH55_678	PF05496	Holliday junction DNA helicase ruvB N-terminus
CH55_679	PF01330	RuvA N terminal domain
CH55_679	PF07499	RuvA, C-terminal domain
CH55_679	PF14520	Helix-hairpin-helix domain
CH55_680	PF02075	Crossover junction endodeoxyribonuclease RuvC
CH55_681	PF01709	Transcriptional regulator
CH55_682	PF00293	NUDIX domain
CH55_683	PF00152	tRNA synthetases class II (D, K and N)
CH55_683	PF01336	OB-fold nucleic acid binding domain
CH55_683	PF02938	GAD domain
CH55_684	PF01904	Protein of unknown function DUF72
CH55_685	PF01124	MAPEG family
CH55_686	PF13649	Methyltransferase domain
CH55_687	PF08003	Protein of unknown function (DUF1698)
CH55_688	PF03932	CutC family
CH55_689	PF06185	YecM protein
CH55_69	PF04074	Domain of unknown function (DUF386)
CH55_690	PF00750	tRNA synthetases class I (R)
CH55_690	PF03485	Arginyl tRNA synthetase N terminal domain
CH55_690	PF05746	DALR anticodon binding domain
CH55_691	PF13332	CH55_691
CH55_692	PF05860	haemagglutination activity domain
CH55_692	PF13332	CH55_692
CH55_693	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
CH55_693	PF08479	POTRA domain, ShlB-type
CH55_693	PF17287	CH55_693
CH55_694	PF03023	CH55_694
CH55_695	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
CH55_696	PF04337	Protein of unknown function, DUF480
CH55_697	PF13302	Acetyltransferase (GNAT) domain
CH55_698	PF07690	Major Facilitator Superfamily
CH55_699	PF07273	Protein of unknown function (DUF1439)
CH55_7	PF00378	Enoyl-CoA hydratase/isomerase family
CH55_7	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
CH55_7	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
CH55_70	PF01202	Shikimate kinase
CH55_700	PF02613	Nitrate reductase delta subunit
CH55_701	PF02811	PHP domain
CH55_703	PF00480	ROK family
CH55_703	PF13412	Winged helix-turn-helix DNA-binding
CH55_704	PF03009	Glycerophosphoryl diester phosphodiesterase family
CH55_705	PF00005	ABC transporter
CH55_706	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_707	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_708	PF13416	Bacterial extracellular solute-binding protein
CH55_709	PF03009	Glycerophosphoryl diester phosphodiesterase family
CH55_71	PF00106	short chain dehydrogenase
CH55_712	PF00916	CH55_712
CH55_712	PF01740	STAS domain
CH55_713	PF00793	DAHP synthetase I family
CH55_714	PF13369	CH55_714
CH55_714	PF13371	Tetratricopeptide repeat
CH55_715	PF04247	CH55_715
CH55_716	PF13847	Methyltransferase domain
CH55_717	PF00472	RF-1 domain
CH55_717	PF03462	PCRF domain
CH55_718	PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain
CH55_718	PF01488	Shikimate / quinate 5-dehydrogenase
CH55_718	PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
CH55_719	PF03550	Outer membrane lipoprotein LolB
CH55_72	PF02638	CH55_72
CH55_720	PF00288	GHMP kinases N terminal domain
CH55_720	PF08544	GHMP kinases C terminal
CH55_721	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
CH55_721	PF14572	Phosphoribosyl synthetase-associated domain
CH55_722	PF10762	CH55_722
CH55_723	PF01195	Peptidyl-tRNA hydrolase
CH55_724	PF01926	50S ribosome-binding GTPase
CH55_724	PF06071	Protein of unknown function (DUF933)
CH55_726	PF00665	Integrase core domain
CH55_727	PF00581	Rhodanese-like domain
CH55_728	PF07859	alpha/beta hydrolase fold
CH55_73	PF00356	Bacterial regulatory proteins, lacI family
CH55_73	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
CH55_730	PF13316	CH55_730
CH55_731	PF14358	CH55_731
CH55_732	PF12682	Flavodoxin
CH55_733	PF01738	Dienelactone hydrolase family
CH55_734	PF00072	Response regulator receiver domain
CH55_734	PF00486	Transcriptional regulatory protein, C terminal
CH55_735	PF00512	His Kinase A (phospho-acceptor) domain
CH55_735	PF00672	HAMP domain
CH55_735	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH55_736	PF02627	Carboxymuconolactone decarboxylase family
CH55_737	PF07883	Cupin domain
CH55_738	PF12697	Alpha/beta hydrolase family
CH55_739	PF13646	HEAT repeats
CH55_74	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
CH55_74	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
CH55_743	PF00106	short chain dehydrogenase
CH55_744	PF08242	Methyltransferase domain
CH55_745	PF02502	Ribose/Galactose Isomerase
CH55_745	PF12408	Ribose-5-phosphate isomerase
CH55_746	PF13226	CH55_746
CH55_748	PF07661	CH55_748
CH55_748	PF08238	Sel1 repeat
CH55_749	PF00872	CH55_749
CH55_75	PF07690	Major Facilitator Superfamily
CH55_750	PF00872	CH55_750
CH55_751	PF00872	CH55_751
CH55_754	PF04101	Glycosyltransferase family 28 C-terminal domain
CH55_756	PF13506	Glycosyl transferase family 21
CH55_757	PF01370	NAD dependent epimerase/dehydratase family
CH55_759	PF00753	Metallo-beta-lactamase superfamily
CH55_76	PF03928	Domain of unknown function (DUF336)
CH55_760	PF01370	NAD dependent epimerase/dehydratase family
CH55_761	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
CH55_762	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
CH55_763	PF00425	chorismate binding enzyme
CH55_764	PF05962	HutD
CH55_765	PF01979	Amidohydrolase family
CH55_766	PF00392	Bacterial regulatory proteins, gntR family
CH55_766	PF07702	UTRA domain
CH55_767	PF01979	Amidohydrolase family
CH55_768	PF05013	N-formylglutamate amidohydrolase
CH55_77	PF00920	Dehydratase family
CH55_770	PF01695	IstB-like ATP binding protein
CH55_771	PF00665	Integrase core domain
CH55_771	PF02796	Helix-turn-helix domain of resolvase
CH55_773	PF08402	TOBE domain
CH55_774	PF00005	ABC transporter
CH55_775	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_776	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_777	PF01547	Bacterial extracellular solute-binding protein
CH55_778	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
CH55_779	PF00392	Bacterial regulatory proteins, gntR family
CH55_779	PF07702	UTRA domain
CH55_785	PF00872	CH55_785
CH55_786	PF00872	CH55_786
CH55_787	PF13676	TIR domain
CH55_788	PF14384	CH55_788
CH55_789	PF04365	Protein of unknown function (DUF497)
CH55_79	PF05957	CH55_79
CH55_790	PF04717	Phage-related baseplate assembly protein
CH55_791	PF04965	Gene 25-like lysozyme
CH55_793	PF10908	CH55_793
CH55_796	PF01527	Transposase
CH55_797	PF00665	Integrase core domain
CH55_797	PF13565	CH55_797
CH55_798	PF05638	Protein of unknown function (DUF796)
CH55_8	PF00300	Histidine phosphatase superfamily (branch 1)
CH55_803	PF03796	DnaB-like helicase C terminal domain
CH55_808	PF01066	CDP-alcohol phosphatidyltransferase
CH55_809	PF01541	GIY-YIG catalytic domain
CH55_809	PF02151	UvrB/uvrC motif
CH55_809	PF08459	UvrC Helix-hairpin-helix N-terminal
CH55_809	PF14520	Helix-hairpin-helix domain
CH55_81	PF00425	chorismate binding enzyme
CH55_810	PF00072	Response regulator receiver domain
CH55_810	PF00196	Bacterial regulatory proteins, luxR family
CH55_811	PF10769	CH55_811
CH55_812	PF06942	CH55_812
CH55_814	PF13505	Outer membrane protein beta-barrel domain
CH55_816	PF00324	Amino acid permease
CH55_817	PF01344	Kelch motif
CH55_818	PF03358	NADPH-dependent FMN reductase
CH55_819	PF04261	Dyp-type peroxidase family
CH55_820	PF09375	Imelysin
CH55_820	PF13473	Cupredoxin-like domain
CH55_821	PF03239	CH55_821
CH55_822	PF00474	Sodium:solute symporter family
CH55_824	PF00171	Aldehyde dehydrogenase family
CH55_824	PF01619	Proline dehydrogenase
CH55_824	PF14850	DNA-binding domain of Proline dehydrogenase
CH55_827	PF00005	ABC transporter
CH55_828	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_829	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH55_83	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CH55_83	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
CH55_83	PF16582	CH55_83
CH55_830	PF00291	Pyridoxal-phosphate dependent enzyme
CH55_831	PF02899	Phage integrase, N-terminal SAM-like domain
CH55_832	PF04539	Sigma-70 region 3
CH55_832	PF04542	Sigma-70 region 2
CH55_832	PF04545	Sigma-70, region 4
CH55_833	PF00669	Bacterial flagellin N-terminal helical region
CH55_833	PF00700	Bacterial flagellin C-terminal helical region
CH55_834	PF02465	CH55_834
CH55_834	PF07195	CH55_834
CH55_834	PF07196	Flagellin hook IN motif
CH55_835	PF02561	Flagellar protein FliS
CH55_836	PF05400	Flagellar protein FliT
CH55_837	PF12833	Helix-turn-helix domain
CH55_84	PF12697	Alpha/beta hydrolase family
CH55_840	PF13487	HD domain
CH55_841	PF00730	HhH-GPD superfamily base excision DNA repair protein
CH55_842	PF02661	Fic/DOC family
CH55_844	PF02049	CH55_844
CH55_845	PF01514	Secretory protein of YscJ/FliF family
CH55_845	PF08345	CH55_845
CH55_846	PF01706	FliG C-terminal domain
CH55_846	PF14841	FliG middle domain
CH55_846	PF14842	FliG N-terminal domain
CH55_847	PF02108	CH55_847
CH55_848	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CH55_849	PF02050	Flagellar FliJ protein
CH55_85	PF00378	Enoyl-CoA hydratase/isomerase family
CH55_850	PF02120	Flagellar hook-length control protein FliK
CH55_851	PF03748	CH55_851
CH55_852	PF01052	Surface presentation of antigens (SPOA)
CH55_852	PF02154	Flagellar motor switch protein FliM
CH55_853	PF01052	Surface presentation of antigens (SPOA)
CH55_853	PF16973	CH55_853
CH55_854	PF04347	CH55_854
CH55_855	PF00813	CH55_855
CH55_856	PF01313	CH55_856
CH55_857	PF01311	CH55_857
CH55_858	PF07927	YcfA-like protein
CH55_859	PF15919	CH55_859
CH55_86	PF13378	Enolase C-terminal domain-like
CH55_860	PF00294	pfkB family carbohydrate kinase
CH55_861	PF02653	CH55_861
CH55_862	PF02653	CH55_862
CH55_863	PF00005	ABC transporter
CH55_864	PF13407	Periplasmic binding protein domain
CH55_865	PF02653	CH55_865
CH55_866	PF00596	Class II Aldolase and Adducin N-terminal domain
CH55_866	PF13561	Enoyl-(Acyl carrier protein) reductase
CH55_867	PF04198	Putative sugar-binding domain
CH55_868	PF00669	Bacterial flagellin N-terminal helical region
CH55_869	PF00460	Flagella basal body rod protein
CH55_869	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH55_87	PF00501	AMP-binding enzyme
CH55_870	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
CH55_870	PF10135	CH55_870
CH55_871	PF02119	CH55_871
CH55_872	PF02107	CH55_872
CH55_873	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH55_874	PF00460	Flagella basal body rod protein
CH55_875	PF00460	Flagella basal body rod protein
CH55_875	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH55_875	PF07559	Flagellar basal body protein FlaE
CH55_876	PF03963	CH55_876
CH55_876	PF13860	FlgD Ig-like domain
CH55_876	PF13861	FlgD Tudor-like domain
CH55_877	PF00460	Flagella basal body rod protein
CH55_877	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH55_878	PF00460	Flagella basal body rod protein
CH55_879	PF13144	SAF-like
CH55_88	PF00591	Glycosyl transferase family, a/b domain
CH55_88	PF02885	Glycosyl transferase family, helical bundle domain
CH55_880	PF04316	Anti-sigma-28 factor, FlgM
CH55_881	PF05130	FlgN protein
CH55_882	PF02369	Bacterial Ig-like domain (group 1)
CH55_882	PF07979	Intimin C-type lectin domain
CH55_882	PF09134	Invasin, domain 3
CH55_882	PF11924	Protein of unknown function (DUF3442)
CH55_883	PF01797	Transposase IS200 like
CH55_884	PF11924	Protein of unknown function (DUF3442)
CH55_885	PF06366	CH55_885
CH55_886	PF00771	FHIPEP family
CH55_887	PF01312	FlhB HrpN YscU SpaS Family
CH55_889	PF07377	Protein of unknown function (DUF1493)
CH55_89	PF07338	Protein of unknown function (DUF1471)
CH55_890	PF10709	CH55_890
CH55_891	PF05425	CH55_891
CH55_892	PF04234	CopC domain
CH55_893	PF00210	Ferritin-like domain
CH55_894	PF06440	DNA polymerase III, theta subunit
CH55_895	PF00561	alpha/beta hydrolase fold
CH55_897	PF00326	Prolyl oligopeptidase family
CH55_897	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
CH55_898	PF13995	YebF-like protein
CH55_899	PF04266	ASCH domain
CH55_9	PF01713	Smr domain
CH55_90	PF05971	Protein of unknown function (DUF890)
CH55_900	PF07130	YebG protein
CH55_901	PF00270	DEAD/DEAH box helicase
CH55_901	PF00271	Helicase conserved C-terminal domain
CH55_901	PF03880	DbpA RNA binding domain
CH55_902	PF02222	ATP-grasp domain
CH55_903	PF03701	CH55_903
CH55_904	PF00425	chorismate binding enzyme
CH55_904	PF04715	Anthranilate synthase component I, N terminal region
CH55_905	PF00293	NUDIX domain
CH55_906	PF03313	CH55_906
CH55_906	PF03315	Serine dehydratase beta chain
CH55_907	PF01613	Flavin reductase like domain
CH55_908	PF03241	4-hydroxyphenylacetate 3-hydroxylase C terminal
CH55_908	PF11794	4-hydroxyphenylacetate 3-hydroxylase N terminal
CH55_909	PF07690	Major Facilitator Superfamily
CH55_909	PF11700	CH55_909
CH55_91	PF01695	IstB-like ATP binding protein
CH55_910	PF07690	Major Facilitator Superfamily
CH55_911	PF03328	HpcH/HpaI aldolase/citrate lyase family
CH55_913	PF02962	5-carboxymethyl-2-hydroxymuconate isomerase
CH55_914	PF02900	Catalytic LigB subunit of aromatic ring-opening dioxygenase
CH55_915	PF00171	Aldehyde dehydrogenase family
CH55_916	PF01557	Fumarylacetoacetate (FAA) hydrolase family
CH55_917	PF01557	Fumarylacetoacetate (FAA) hydrolase family
CH55_918	PF01047	MarR family
CH55_919	PF00571	CBS domain
CH55_919	PF03471	Transporter associated domain
CH55_919	PF03741	CH55_919
CH55_920	PF03610	PTS system fructose IIA component
CH55_920	PF03830	PTS system sorbose subfamily IIB component
CH55_921	PF03609	CH55_921
CH55_922	PF03613	CH55_922
CH55_923	PF06173	CH55_923
CH55_924	PF02659	CH55_924
CH55_925	PF00593	TonB dependent receptor
CH55_925	PF07715	TonB-dependent Receptor Plug Domain
CH55_926	PF13426	PAS domain
CH55_927	PF00989	PAS fold
CH55_927	PF00990	GGDEF domain
CH55_927	PF13426	PAS domain
CH55_929	PF13847	Methyltransferase domain
CH55_93	PF00665	Integrase core domain
CH55_93	PF02796	Helix-turn-helix domain of resolvase
CH55_930	PF02578	Multi-copper polyphenol oxidoreductase laccase
CH55_931	PF00313	'Cold-shock' DNA-binding domain
CH55_933	PF07017	Antimicrobial peptide resistance and lipid A acylation protein PagP
CH55_934	PF00324	Amino acid permease
CH55_935	PF13269	CH55_935
CH55_936	PF10765	Protein of unknown function (DUF2591)
CH55_937	PF13974	CH55_937
CH55_938	PF13996	CH55_938
CH55_939	PF10964	CH55_939
CH55_94	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CH55_94	PF08448	PAS fold
CH55_94	PF13426	PAS domain
CH55_941	PF12833	Helix-turn-helix domain
CH55_943	PF00005	ABC transporter
CH55_943	PF00664	ABC transporter transmembrane region
CH55_944	PF01163	RIO1 family
CH55_945	PF03795	YCII-related domain
CH55_946	PF06167	Glucose-regulated metallo-peptidase M90
CH55_949	PF01695	IstB-like ATP binding protein
CH55_950	PF00665	Integrase core domain
CH55_950	PF02796	Helix-turn-helix domain of resolvase
CH55_951	PF00356	Bacterial regulatory proteins, lacI family
CH55_951	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
CH55_952	PF00872	CH55_952
CH55_953	PF01306	LacY proton/sugar symporter
CH55_954	PF02065	Melibiase
CH55_954	PF16875	CH55_954
CH55_957	PF01648	4'-phosphopantetheinyl transferase superfamily
CH55_958	PF03480	Bacterial extracellular solute-binding protein, family 7
CH55_959	PF04290	CH55_959
CH55_96	PF00005	ABC transporter
CH55_960	PF06808	CH55_960
CH55_961	PF00072	Response regulator receiver domain
CH55_961	PF00196	Bacterial regulatory proteins, luxR family
CH55_963	PF09831	CH55_963
CH55_965	PF01522	Polysaccharide deacetylase
CH55_966	PF07690	Major Facilitator Superfamily
CH55_967	PF01554	MatE
CH55_968	PF00764	Arginosuccinate synthase
CH55_969	PF01070	FMN-dependent dehydrogenase
CH55_97	PF00528	Binding-protein-dependent transport system inner membrane component
CH55_971	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
CH55_971	PF13378	Enolase C-terminal domain-like
CH55_972	PF01557	Fumarylacetoacetate (FAA) hydrolase family
CH55_973	PF13561	Enoyl-(Acyl carrier protein) reductase
CH55_974	PF04134	CH55_974
CH55_975	PF07690	Major Facilitator Superfamily
CH55_976	PF00872	CH55_976
CH55_977	PF02369	Bacterial Ig-like domain (group 1)
CH55_977	PF09134	Invasin, domain 3
CH55_977	PF11924	Protein of unknown function (DUF3442)
CH55_978	PF04363	CH55_978
CH55_979	PF07993	Male sterility protein
CH55_98	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH55_980	PF00929	Exonuclease
CH55_980	PF08411	Exonuclease C-terminal
CH55_981	PF13520	Amino acid permease
CH55_983	PF00465	Iron-containing alcohol dehydrogenase
CH55_984	PF00005	ABC transporter
CH55_985	PF00005	ABC transporter
CH55_986	PF02653	CH55_986
CH55_987	PF16695	CH55_987
CH55_988	PF01370	NAD dependent epimerase/dehydratase family
CH55_989	PF01634	ATP phosphoribosyltransferase
CH55_989	PF08029	HisG, C-terminal domain
CH55_99	PF02698	DUF218 domain
CH55_990	PF00815	Histidinol dehydrogenase
CH55_991	PF00155	Aminotransferase class I and II
CH55_992	PF00475	Imidazoleglycerol-phosphate dehydratase
CH55_992	PF13242	HAD-hyrolase-like
CH55_993	PF00117	Glutamine amidotransferase class-I
CH55_994	PF00977	Histidine biosynthesis protein
CH55_995	PF00977	Histidine biosynthesis protein
CH55_996	PF01502	Phosphoribosyl-AMP cyclohydrolase
CH55_996	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
CH55_997	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
CH55_997	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
CH55_998	PF00483	Nucleotidyl transferase
CH55_999	PF00483	Nucleotidyl transferase