CH55_1005 SM00382 ATPases associated with a variety of cellular activities CH55_1007 SM01006 Siderophore biosynthesis protein domain CH55_1011 SM01091 Transporter associated domain CH55_1017 SM01321 CH55_1017 CH55_1026 SM00919 Malic enzyme, NAD binding domain CH55_1026 SM01274 CH55_1026 CH55_1029 SM00382 ATPases associated with a variety of cellular activities CH55_1035 SM00829 Enoylreductase CH55_1040 SM00382 ATPases associated with a variety of cellular activities CH55_1042 SM00852 Probable molybdopterin binding domain CH55_1047 SM00382 ATPases associated with a variety of cellular activities CH55_1067 SM00382 ATPases associated with a variety of cellular activities CH55_1067 SM01086 C-terminal, D2-small domain, of ClpB protein CH55_1076 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH55_108 SM00829 Enoylreductase CH55_1084 SM00825 Beta-ketoacyl synthase CH55_1097 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH55_1098 SM00992 Hemimethylated DNA-binding protein YccV like CH55_1099 SM00881 CoA binding domain CH55_110 SM00382 ATPases associated with a variety of cellular activities CH55_1101 SM00851 MGS-like domain CH55_1108 SM01321 CH55_1108 CH55_1117 SM00825 Beta-ketoacyl synthase CH55_1118 SM01321 CH55_1118 CH55_112 SM00354 helix_turn _helix lactose operon repressor CH55_1122 SM00382 ATPases associated with a variety of cellular activities CH55_1123 SM00981 CH55_1123 CH55_1132 SM00849 Metallo-beta-lactamase superfamily CH55_1135 SM01321 CH55_1135 CH55_114 SM01329 CH55_114 CH55_1143 SM00357 Cold shock protein domain CH55_1144 SM01150 CH55_1144 CH55_1146 SM00382 ATPases associated with a variety of cellular activities CH55_1147 SM00849 Metallo-beta-lactamase superfamily CH55_1149 SM00411 bacterial (prokaryotic) histone like domain CH55_1151 SM00316 Ribosomal protein S1-like RNA-binding domain CH55_1157 SM00870 CH55_1157 CH55_1165 SM00382 ATPases associated with a variety of cellular activities CH55_1168 SM00382 ATPases associated with a variety of cellular activities CH55_1171 SM00843 CH55_1171 CH55_1172 SM00344 helix_turn_helix ASNC type CH55_1174 SM00382 ATPases associated with a variety of cellular activities CH55_1175 SM00382 ATPases associated with a variety of cellular activities CH55_1178 SM00316 Ribosomal protein S1-like RNA-binding domain CH55_1179 SM01321 CH55_1179 CH55_1180 SM00382 ATPases associated with a variety of cellular activities CH55_1180 SM01086 C-terminal, D2-small domain, of ClpB protein CH55_1182 SM00357 Cold shock protein domain CH55_1183 SM00382 ATPases associated with a variety of cellular activities CH55_1195 SM00830 Chorismate mutase type II CH55_1196 SM00382 ATPases associated with a variety of cellular activities CH55_1197 SM00062 Bacterial periplasmic substrate-binding proteins CH55_1197 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH55_120 SM00912 haemagglutination activity domain CH55_1203 SM00382 ATPases associated with a variety of cellular activities CH55_1207 SM00244 prohibitin homologues CH55_1209 SM00062 Bacterial periplasmic substrate-binding proteins CH55_1209 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH55_1214 SM00382 ATPases associated with a variety of cellular activities CH55_1221 SM00014 Acid phosphatase homologues CH55_1222 SM01133 CH55_1222 CH55_1223 SM00420 helix_turn_helix, Deoxyribose operon repressor CH55_1223 SM01134 CH55_1223 CH55_1226 SM00936 Penicillin-binding protein 5, C-terminal domain CH55_1228 SM00382 ATPases associated with a variety of cellular activities CH55_1228 SM00930 CH55_1228 CH55_1234 SM00382 ATPases associated with a variety of cellular activities CH55_1242 SM00518 AP endonuclease family 2 CH55_1247 SM00862 Transcriptional regulatory protein, C terminal CH55_1253 SM00382 ATPases associated with a variety of cellular activities CH55_1263 SM00841 Elongation factor P, C-terminal CH55_1263 SM01185 CH55_1263 CH55_1266 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH55_1266 SM00895 CH55_1266 CH55_1268 SM00833 Cobalamin synthesis protein cobW C-terminal domain CH55_1269 SM00014 Acid phosphatase homologues CH55_1272 SM00052 Putative diguanylate phosphodiesterase CH55_1276 SM00382 ATPases associated with a variety of cellular activities CH55_1279 SM00363 S4 RNA-binding domain CH55_1280 SM00487 DEAD-like helicases superfamily CH55_1280 SM00490 helicase superfamily c-terminal domain CH55_1283 SM01321 CH55_1283 CH55_129 SM00382 ATPases associated with a variety of cellular activities CH55_131 SM00354 helix_turn _helix lactose operon repressor CH55_1312 SM00420 helix_turn_helix, Deoxyribose operon repressor CH55_1312 SM01134 CH55_1312 CH55_1313 SM01007 Class II Aldolase and Adducin N-terminal domain CH55_1316 SM00530 Helix-turn-helix XRE-family like proteins CH55_1319 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH55_1319 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH55_1325 SM01321 CH55_1325 CH55_1331 SM00421 helix_turn_helix, Lux Regulon CH55_1331 SM00448 cheY-homologous receiver domain CH55_1332 SM00387 Histidine kinase-like ATPases CH55_1332 SM00388 His Kinase A (phosphoacceptor) domain CH55_1332 SM00448 cheY-homologous receiver domain CH55_1333 SM00434 DNA Topoisomerase IV CH55_1339 SM00852 Probable molybdopterin binding domain CH55_1342 SM01060 CH55_1342 CH55_1343 SM00487 DEAD-like helicases superfamily CH55_1343 SM00488 CH55_1343 CH55_1343 SM00491 CH55_1343 CH55_1350 SM00382 ATPases associated with a variety of cellular activities CH55_1354 SM00450 Rhodanese Homology Domain CH55_1357 SM00382 ATPases associated with a variety of cellular activities CH55_1366 SM00382 ATPases associated with a variety of cellular activities CH55_1369 SM00507 HNH nucleases CH55_1370 SM01118 CH55_1370 CH55_1376 SM01321 CH55_1376 CH55_1377 SM00490 helicase superfamily c-terminal domain CH55_1385 SM01321 CH55_1385 CH55_1387 SM00116 Domain in cystathionine beta-synthase and other proteins. CH55_1387 SM01240 CH55_1387 CH55_1392 SM00564 beta-propeller repeat CH55_1396 SM00530 Helix-turn-helix XRE-family like proteins CH55_1397 SM00028 Tetratricopeptide repeats CH55_1399 SM00562 CH55_1399 CH55_1400 SM00247 Beta/gamma crystallins CH55_1402 SM00869 Autotransporter beta-domain CH55_1410 SM00271 DnaJ molecular chaperone homology domain CH55_1417 SM01321 CH55_1417 CH55_1427 SM00938 Nitrogen regulatory protein P-II CH55_1429 SM00382 ATPases associated with a variety of cellular activities CH55_1429 SM00448 cheY-homologous receiver domain CH55_1431 SM00387 Histidine kinase-like ATPases CH55_1431 SM00388 His Kinase A (phosphoacceptor) domain CH55_1432 SM01321 CH55_1432 CH55_1436 SM01211 CH55_1436 CH55_1437 SM00062 Bacterial periplasmic substrate-binding proteins CH55_1443 SM01321 CH55_1443 CH55_1448 SM00358 Double-stranded RNA binding motif CH55_1448 SM00535 Ribonuclease III family CH55_1458 SM00487 DEAD-like helicases superfamily CH55_1458 SM00490 helicase superfamily c-terminal domain CH55_1460 SM00248 ankyrin repeats CH55_1464 SM00986 Uracil DNA glycosylase superfamily CH55_1464 SM00987 UreE urease accessory protein, C-terminal domain CH55_1469 SM00797 Allophanate hydrolase subunit 2 CH55_1470 SM00796 Allophanate hydrolase subunit 1 CH55_1480 SM00387 Histidine kinase-like ATPases CH55_1480 SM00388 His Kinase A (phosphoacceptor) domain CH55_1481 SM00448 cheY-homologous receiver domain CH55_1481 SM00862 Transcriptional regulatory protein, C terminal CH55_1490 SM00342 helix_turn_helix, arabinose operon control protein CH55_1503 SM00988 UreE urease accessory protein, N-terminal domain CH55_1508 SM00382 ATPases associated with a variety of cellular activities CH55_1509 SM00382 ATPases associated with a variety of cellular activities CH55_1513 SM00357 Cold shock protein domain CH55_1522 SM00382 ATPases associated with a variety of cellular activities CH55_153 SM00421 helix_turn_helix, Lux Regulon CH55_1538 SM01081 Putative carbohydrate binding domain CH55_1541 SM01321 CH55_1541 CH55_1555 SM00729 Elongator protein 3, MiaB family, Radical SAM CH55_1558 SM00116 Domain in cystathionine beta-synthase and other proteins. CH55_1558 SM01091 Transporter associated domain CH55_156 SM00450 Rhodanese Homology Domain CH55_1560 SM00062 Bacterial periplasmic substrate-binding proteins CH55_1563 SM00382 ATPases associated with a variety of cellular activities CH55_1575 SM00936 Penicillin-binding protein 5, C-terminal domain CH55_1578 SM00729 Elongator protein 3, MiaB family, Radical SAM CH55_158 SM00421 helix_turn_helix, Lux Regulon CH55_1581 SM00357 Cold shock protein domain CH55_1583 SM00421 helix_turn_helix, Lux Regulon CH55_1588 SM00382 ATPases associated with a variety of cellular activities CH55_1595 SM00382 ATPases associated with a variety of cellular activities CH55_1605 SM01359 CH55_1605 CH55_1605 SM01360 CH55_1605 CH55_1607 SM01321 CH55_1607 CH55_1619 SM00869 Autotransporter beta-domain CH55_1625 SM01217 CH55_1625 CH55_1635 SM00195 Dual specificity phosphatase, catalytic domain CH55_1635 SM00404 Protein tyrosine phosphatase, catalytic domain motif CH55_1637 SM00563 Phosphate acyltransferases CH55_1648 SM01321 CH55_1648 CH55_1650 SM00840 CH55_1650 CH55_1653 SM01001 AIR carboxylase CH55_1656 SM00382 ATPases associated with a variety of cellular activities CH55_1658 SM00822 CH55_1658 CH55_166 SM00316 Ribosomal protein S1-like RNA-binding domain CH55_1660 SM00244 prohibitin homologues CH55_1662 SM00422 helix_turn_helix, mercury resistance CH55_167 SM00363 S4 RNA-binding domain CH55_1698 SM00387 Histidine kinase-like ATPases CH55_1699 SM00493 CH55_1699 CH55_17 SM00825 Beta-ketoacyl synthase CH55_1701 SM00382 ATPases associated with a variety of cellular activities CH55_1721 SM00938 Nitrogen regulatory protein P-II CH55_1722 SM00382 ATPases associated with a variety of cellular activities CH55_1723 SM00382 ATPases associated with a variety of cellular activities CH55_1724 SM00344 helix_turn_helix ASNC type CH55_173 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH55_1732 SM00411 bacterial (prokaryotic) histone like domain CH55_1733 SM00382 ATPases associated with a variety of cellular activities CH55_1733 SM00464 Found in ATP-dependent protease La (LON) CH55_1734 SM00382 ATPases associated with a variety of cellular activities CH55_1734 SM00994 ClpX C4-type zinc finger CH55_1734 SM01086 C-terminal, D2-small domain, of ClpB protein CH55_174 SM00822 CH55_174 CH55_1751 SM00981 CH55_1751 CH55_1754 SM00861 Transketolase, pyrimidine binding domain CH55_1755 SM01321 CH55_1755 CH55_176 SM00825 Beta-ketoacyl synthase CH55_1764 SM01321 CH55_1764 CH55_1767 SM01323 CH55_1767 CH55_177 SM01321 CH55_177 CH55_1775 SM00642 Alpha-amylase domain CH55_1779 SM00091 PAS domain CH55_1779 SM00387 Histidine kinase-like ATPases CH55_1779 SM00388 His Kinase A (phosphoacceptor) domain CH55_1780 SM00448 cheY-homologous receiver domain CH55_1780 SM00862 Transcriptional regulatory protein, C terminal CH55_1784 SM00382 ATPases associated with a variety of cellular activities CH55_1793 SM01321 CH55_1793 CH55_1795 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH55_1800 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CH55_1801 SM01321 CH55_1801 CH55_1811 SM00900 CH55_1811 CH55_1820 SM00710 Parallel beta-helix repeats CH55_1820 SM00912 haemagglutination activity domain CH55_1824 SM00382 ATPases associated with a variety of cellular activities CH55_1827 SM00062 Bacterial periplasmic substrate-binding proteins CH55_1835 SM00347 helix_turn_helix multiple antibiotic resistance protein CH55_1838 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH55_1840 SM01144 CH55_1840 CH55_1841 SM00881 CoA binding domain CH55_1842 SM00155 Phospholipase D. Active site motifs. CH55_1849 SM00382 ATPases associated with a variety of cellular activities CH55_1849 SM01086 C-terminal, D2-small domain, of ClpB protein CH55_185 SM01321 CH55_185 CH55_1851 SM00363 S4 RNA-binding domain CH55_1854 SM01321 CH55_1854 CH55_1855 SM00830 Chorismate mutase type II CH55_1857 SM00382 ATPases associated with a variety of cellular activities CH55_1859 SM00830 Chorismate mutase type II CH55_1861 SM00448 cheY-homologous receiver domain CH55_1861 SM00850 LytTr DNA-binding domain CH55_1867 SM01321 CH55_1867 CH55_1872 SM00382 ATPases associated with a variety of cellular activities CH55_1872 SM00962 SRP54-type protein, GTPase domain CH55_1872 SM00963 SRP54-type protein, helical bundle domain CH55_1874 SM01091 Transporter associated domain CH55_1875 SM01321 CH55_1875 CH55_1885 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH55_1887 SM00382 ATPases associated with a variety of cellular activities CH55_1893 SM00861 Transketolase, pyrimidine binding domain CH55_1896 SM00382 ATPases associated with a variety of cellular activities CH55_1905 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH55_1906 SM01007 Class II Aldolase and Adducin N-terminal domain CH55_1907 SM00420 helix_turn_helix, Deoxyribose operon repressor CH55_1907 SM01134 CH55_1907 CH55_1909 SM01321 CH55_1909 CH55_1910 SM00382 ATPases associated with a variety of cellular activities CH55_1921 SM01235 CH55_1921 CH55_1922 SM00062 Bacterial periplasmic substrate-binding proteins CH55_1925 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH55_1928 SM01120 CH55_1928 CH55_1931 SM00829 Enoylreductase CH55_1933 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CH55_1933 SM00534 ATPase domain of DNA mismatch repair MUTS family CH55_1935 SM00257 Lysin motif CH55_1957 SM01192 CH55_1957 CH55_1957 SM01193 CH55_1957 CH55_1960 SM00954 Region found in RelA / SpoT proteins CH55_1961 SM00073 Histidine Phosphotransfer domain CH55_1961 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH55_1961 SM00387 Histidine kinase-like ATPases CH55_1961 SM00388 His Kinase A (phosphoacceptor) domain CH55_1961 SM00448 cheY-homologous receiver domain CH55_1962 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH55_1963 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH55_1972 SM00382 ATPases associated with a variety of cellular activities CH55_1974 SM00487 DEAD-like helicases superfamily CH55_1974 SM00490 helicase superfamily c-terminal domain CH55_1974 SM00847 Helicase associated domain (HA2) Add an annotation CH55_1987 SM00382 ATPases associated with a variety of cellular activities CH55_1988 SM00947 Carbonic anhydrase CH55_1997 SM01321 CH55_1997 CH55_200 SM00487 DEAD-like helicases superfamily CH55_200 SM00490 helicase superfamily c-terminal domain CH55_200 SM00982 CH55_200 CH55_200 SM01058 CarD-like/TRCF domain CH55_2001 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH55_2001 SM00895 CH55_2001 CH55_2005 SM00644 CH55_2005 CH55_2010 SM01240 CH55_2010 CH55_2014 SM01321 CH55_2014 CH55_2016 SM00382 ATPases associated with a variety of cellular activities CH55_202 SM00382 ATPases associated with a variety of cellular activities CH55_2034 SM00382 ATPases associated with a variety of cellular activities CH55_2035 SM00382 ATPases associated with a variety of cellular activities CH55_2039 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH55_2039 SM00866 CH55_2039 CH55_2045 SM00382 ATPases associated with a variety of cellular activities CH55_2046 SM00382 ATPases associated with a variety of cellular activities CH55_2048 SM00072 Guanylate kinase homologues. CH55_2049 SM00849 Metallo-beta-lactamase superfamily CH55_2050 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH55_2053 SM00382 ATPases associated with a variety of cellular activities CH55_207 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CH55_2071 SM00530 Helix-turn-helix XRE-family like proteins CH55_2073 SM00487 DEAD-like helicases superfamily CH55_2073 SM00490 helicase superfamily c-terminal domain CH55_2074 SM00028 Tetratricopeptide repeats CH55_2075 SM00316 Ribosomal protein S1-like RNA-binding domain CH55_2075 SM00322 K homology RNA-binding domain CH55_2079 SM00862 Transcriptional regulatory protein, C terminal CH55_208 SM00387 Histidine kinase-like ATPases CH55_208 SM00388 His Kinase A (phosphoacceptor) domain CH55_209 SM00448 cheY-homologous receiver domain CH55_209 SM00862 Transcriptional regulatory protein, C terminal CH55_2093 SM00858 CH55_2093 CH55_2097 SM00382 ATPases associated with a variety of cellular activities CH55_2102 SM00382 ATPases associated with a variety of cellular activities CH55_2116 SM01321 CH55_2116 CH55_2135 SM00342 helix_turn_helix, arabinose operon control protein CH55_2141 SM00563 Phosphate acyltransferases CH55_2142 SM00434 DNA Topoisomerase IV CH55_2145 SM00387 Histidine kinase-like ATPases CH55_2145 SM00433 TopoisomeraseII CH55_216 SM01329 CH55_216 CH55_2161 SM01118 CH55_2161 CH55_2162 SM00287 Bacterial SH3 domain homologues CH55_2163 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH55_2165 SM00905 Dihydroneopterin aldolase CH55_2166 SM01207 CH55_2166 CH55_2169 SM00400 zinc finger CH55_2169 SM00493 CH55_2169 CH55_2169 SM00766 DNA primase DnaG DnaB-binding CH55_217 SM00354 helix_turn _helix lactose operon repressor CH55_219 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH55_219 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH55_2196 SM01217 CH55_2196 CH55_22 SM00342 helix_turn_helix, arabinose operon control protein CH55_2201 SM00354 helix_turn _helix lactose operon repressor CH55_2203 SM00382 ATPases associated with a variety of cellular activities CH55_2206 SM00869 Autotransporter beta-domain CH55_2213 SM00912 haemagglutination activity domain CH55_2215 SM00327 von Willebrand factor (vWF) type A domain CH55_2217 SM00327 von Willebrand factor (vWF) type A domain CH55_2218 SM00327 von Willebrand factor (vWF) type A domain CH55_2220 SM00220 Serine/Threonine protein kinases, catalytic domain CH55_2225 SM00869 Autotransporter beta-domain CH55_2230 SM01321 CH55_2230 CH55_2234 SM00650 Ribosomal RNA adenine dimethylases CH55_2238 SM00271 DnaJ molecular chaperone homology domain CH55_2248 SM00382 ATPases associated with a variety of cellular activities CH55_2248 SM01086 C-terminal, D2-small domain, of ClpB protein CH55_226 SM00344 helix_turn_helix ASNC type CH55_2260 SM00487 DEAD-like helicases superfamily CH55_2260 SM00490 helicase superfamily c-terminal domain CH55_2261 SM00486 DNA polymerase type-B family CH55_2263 SM00382 ATPases associated with a variety of cellular activities CH55_2271 SM01329 CH55_2271 CH55_2272 SM00917 LeuA allosteric (dimerisation) domain CH55_2274 SM01321 CH55_2274 CH55_228 SM00829 Enoylreductase CH55_2280 SM01321 CH55_2280 CH55_2281 SM00354 helix_turn _helix lactose operon repressor CH55_229 SM01038 Beta galactosidase small chain CH55_2296 SM00842 Cell division protein FtsA CH55_2297 SM00864 Tubulin/FtsZ family, GTPase domain CH55_2297 SM00865 Tubulin/FtsZ family, C-terminal domain CH55_230 SM00357 Cold shock protein domain CH55_2301 SM00957 SecA DEAD-like domain CH55_2301 SM00958 SecA preprotein cross-linking domain CH55_2303 SM00382 ATPases associated with a variety of cellular activities CH55_2314 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH55_2314 SM00895 CH55_2314 CH55_2318 SM00858 CH55_2318 CH55_2320 SM01321 CH55_2320 CH55_2325 SM00851 MGS-like domain CH55_2325 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH55_2326 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CH55_2328 SM01321 CH55_2328 CH55_233 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH55_233 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH55_233 SM00319 Homologues of the ligand binding domain of Tar CH55_2333 SM00904 Riboflavin kinase CH55_2337 SM00271 DnaJ molecular chaperone homology domain CH55_2342 SM00852 Probable molybdopterin binding domain CH55_235 SM00831 Cation transporter/ATPase, N-terminus CH55_2350 SM00448 cheY-homologous receiver domain CH55_2350 SM00862 Transcriptional regulatory protein, C terminal CH55_2353 SM00855 Phosphoglycerate mutase family CH55_2354 SM00342 helix_turn_helix, arabinose operon control protein CH55_2354 SM00871 Bacterial transcription activator, effector binding domain CH55_2358 SM00831 Cation transporter/ATPase, N-terminus CH55_2360 SM00267 diguanylate cyclase CH55_2363 SM00382 ATPases associated with a variety of cellular activities CH55_2365 SM00530 Helix-turn-helix XRE-family like proteins CH55_2366 SM00382 ATPases associated with a variety of cellular activities CH55_2371 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CH55_2373 SM01133 CH55_2373 CH55_2379 SM00749 bacterial OsmY and nodulation domain CH55_2386 SM00267 diguanylate cyclase CH55_2397 SM00382 ATPases associated with a variety of cellular activities CH55_24 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH55_2402 SM01133 CH55_2402 CH55_2408 SM00342 helix_turn_helix, arabinose operon control protein CH55_241 SM00073 Histidine Phosphotransfer domain CH55_241 SM00260 Two component signalling adaptor domain CH55_241 SM00387 Histidine kinase-like ATPases CH55_241 SM01231 CH55_241 CH55_242 SM00260 Two component signalling adaptor domain CH55_2423 SM00382 ATPases associated with a variety of cellular activities CH55_2431 SM01230 CH55_2431 CH55_2432 SM00091 PAS domain CH55_2432 SM00387 Histidine kinase-like ATPases CH55_2432 SM00388 His Kinase A (phosphoacceptor) domain CH55_2433 SM00382 ATPases associated with a variety of cellular activities CH55_2433 SM00448 cheY-homologous receiver domain CH55_2434 SM00729 Elongator protein 3, MiaB family, Radical SAM CH55_2437 SM01321 CH55_2437 CH55_2438 SM01321 CH55_2438 CH55_2439 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH55_2439 SM00474 3'-5' exonuclease CH55_2439 SM00475 5'-3' exonuclease CH55_2439 SM00482 DNA polymerase A domain CH55_2462 SM00749 bacterial OsmY and nodulation domain CH55_2465 SM00073 Histidine Phosphotransfer domain CH55_2465 SM00091 PAS domain CH55_2465 SM00387 Histidine kinase-like ATPases CH55_2465 SM00388 His Kinase A (phosphoacceptor) domain CH55_2465 SM00448 cheY-homologous receiver domain CH55_2466 SM00729 Elongator protein 3, MiaB family, Radical SAM CH55_2478 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH55_2479 SM01321 CH55_2479 CH55_2480 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH55_2487 SM00382 ATPases associated with a variety of cellular activities CH55_2489 SM00116 Domain in cystathionine beta-synthase and other proteins. CH55_2493 SM00382 ATPases associated with a variety of cellular activities CH55_2503 SM00354 helix_turn _helix lactose operon repressor CH55_2505 SM00642 Alpha-amylase domain CH55_251 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH55_251 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH55_251 SM00319 Homologues of the ligand binding domain of Tar CH55_252 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH55_252 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH55_252 SM00319 Homologues of the ligand binding domain of Tar CH55_253 SM00138 Methyltransferase, chemotaxis proteins CH55_2532 SM00316 Ribosomal protein S1-like RNA-binding domain CH55_2537 SM00052 Putative diguanylate phosphodiesterase CH55_2537 SM00267 diguanylate cyclase CH55_2538 SM00829 Enoylreductase CH55_254 SM00448 cheY-homologous receiver domain CH55_2543 SM00878 Biotin carboxylase C-terminal domain CH55_255 SM00448 cheY-homologous receiver domain CH55_2551 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH55_2551 SM00895 CH55_2551 CH55_2555 SM00849 Metallo-beta-lactamase superfamily CH55_2557 SM00357 Cold shock protein domain CH55_2558 SM00357 Cold shock protein domain CH55_2559 SM01321 CH55_2559 CH55_2567 SM00382 ATPases associated with a variety of cellular activities CH55_257 SM00644 CH55_257 CH55_2574 SM00382 ATPases associated with a variety of cellular activities CH55_2577 SM00062 Bacterial periplasmic substrate-binding proteins CH55_2579 SM01133 CH55_2579 CH55_2582 SM00342 helix_turn_helix, arabinose operon control protein CH55_2590 SM00530 Helix-turn-helix XRE-family like proteins CH55_2593 SM00860 SMI1 / KNR4 family CH55_2604 SM00382 ATPases associated with a variety of cellular activities CH55_2604 SM01086 C-terminal, D2-small domain, of ClpB protein CH55_262 SM01005 Alanine racemase, C-terminal domain CH55_2620 SM00642 Alpha-amylase domain CH55_2621 SM00642 Alpha-amylase domain CH55_2623 SM00257 Lysin motif CH55_2623 SM00634 Bacterial Ig-like domain (group 1) CH55_2628 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH55_2635 SM00354 helix_turn _helix lactose operon repressor CH55_2638 SM00448 cheY-homologous receiver domain CH55_2638 SM00862 Transcriptional regulatory protein, C terminal CH55_2644 SM00382 ATPases associated with a variety of cellular activities CH55_2645 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH55_2645 SM00387 Histidine kinase-like ATPases CH55_2645 SM00388 His Kinase A (phosphoacceptor) domain CH55_2645 SM00448 cheY-homologous receiver domain CH55_2651 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH55_2652 SM00235 Zinc-dependent metalloprotease CH55_2663 SM00869 Autotransporter beta-domain CH55_2668 SM00052 Putative diguanylate phosphodiesterase CH55_2676 SM00052 Putative diguanylate phosphodiesterase CH55_2676 SM00267 diguanylate cyclase CH55_2678 SM00382 ATPases associated with a variety of cellular activities CH55_2679 SM00382 ATPases associated with a variety of cellular activities CH55_268 SM00382 ATPases associated with a variety of cellular activities CH55_2685 SM00912 haemagglutination activity domain CH55_2686 SM01321 CH55_2686 CH55_2689 SM00387 Histidine kinase-like ATPases CH55_2690 SM00421 helix_turn_helix, Lux Regulon CH55_2690 SM00448 cheY-homologous receiver domain CH55_2704 SM00382 ATPases associated with a variety of cellular activities CH55_2706 SM00530 Helix-turn-helix XRE-family like proteins CH55_2713 SM00342 helix_turn_helix, arabinose operon control protein CH55_2715 SM00382 ATPases associated with a variety of cellular activities CH55_2740 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH55_2743 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH55_2743 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH55_2743 SM01358 CH55_2743 CH55_276 SM00382 ATPases associated with a variety of cellular activities CH55_2761 SM00642 Alpha-amylase domain CH55_277 SM00382 ATPases associated with a variety of cellular activities CH55_2776 SM00387 Histidine kinase-like ATPases CH55_2776 SM00433 TopoisomeraseII CH55_2778 SM00480 DNA polymerase III beta subunit CH55_2779 SM00382 ATPases associated with a variety of cellular activities CH55_2779 SM00760 Bacterial dnaA protein helix-turn-helix domain CH55_2783 SM01234 CH55_2783 CH55_2793 SM00062 Bacterial periplasmic substrate-binding proteins CH55_2796 SM00382 ATPases associated with a variety of cellular activities CH55_280 SM00155 Phospholipase D. Active site motifs. CH55_2803 SM00382 ATPases associated with a variety of cellular activities CH55_2812 SM01228 CH55_2812 CH55_2814 SM00344 helix_turn_helix ASNC type CH55_2816 SM00327 von Willebrand factor (vWF) type A domain CH55_2817 SM00382 ATPases associated with a variety of cellular activities CH55_2823 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH55_2823 SM00895 CH55_2823 CH55_2837 SM00346 helix_turn_helix isocitrate lyase regulation CH55_2838 SM01018 B12 binding domain CH55_2839 SM00912 haemagglutination activity domain CH55_2848 SM00382 ATPases associated with a variety of cellular activities CH55_2863 SM00420 helix_turn_helix, Deoxyribose operon repressor CH55_2863 SM01134 CH55_2863 CH55_2865 SM00450 Rhodanese Homology Domain CH55_2866 SM00421 helix_turn_helix, Lux Regulon CH55_2876 SM00899 CH55_2876 CH55_2877 SM00316 Ribosomal protein S1-like RNA-binding domain CH55_2877 SM00732 Likely ribonuclease with RNase H fold. CH55_2879 SM00448 cheY-homologous receiver domain CH55_2879 SM00862 Transcriptional regulatory protein, C terminal CH55_2880 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH55_2880 SM00387 Histidine kinase-like ATPases CH55_2880 SM00388 His Kinase A (phosphoacceptor) domain CH55_2883 SM00363 S4 RNA-binding domain CH55_2908 SM00354 helix_turn _helix lactose operon repressor CH55_2915 SM00100 Cyclic nucleotide-monophosphate binding domain CH55_2915 SM00419 helix_turn_helix, cAMP Regulatory protein CH55_2922 SM00062 Bacterial periplasmic substrate-binding proteins CH55_2923 SM00382 ATPases associated with a variety of cellular activities CH55_2928 SM00382 ATPases associated with a variety of cellular activities CH55_294 SM00749 bacterial OsmY and nodulation domain CH55_2942 SM00838 Elongation factor G C-terminus CH55_2942 SM00889 Elongation factor G, domain IV CH55_2944 SM01321 CH55_2944 CH55_2947 SM01403 CH55_2947 CH55_2951 SM01382 CH55_2951 CH55_2951 SM01383 CH55_2951 CH55_2954 SM00322 K homology RNA-binding domain CH55_2958 SM01374 CH55_2958 CH55_2959 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH55_2972 SM00363 S4 RNA-binding domain CH55_2972 SM01390 CH55_2972 CH55_2973 SM00662 RNA polymerases D CH55_2975 SM00422 helix_turn_helix, mercury resistance CH55_2996 SM00487 DEAD-like helicases superfamily CH55_2996 SM00490 helicase superfamily c-terminal domain CH55_2998 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH55_2998 SM00954 Region found in RelA / SpoT proteins CH55_2999 SM01409 CH55_2999 CH55_3000 SM00072 Guanylate kinase homologues. CH55_3001 SM00532 Ligase N family CH55_301 SM00481 DNA polymerase alpha chain like domain CH55_3013 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CH55_3013 SM01232 CH55_3013 CH55_3021 SM00829 Enoylreductase CH55_3026 SM00450 Rhodanese Homology Domain CH55_303 SM00363 S4 RNA-binding domain CH55_3030 SM00971 Serine acetyltransferase, N-terminal CH55_3032 SM00342 helix_turn_helix, arabinose operon control protein CH55_3033 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH55_3033 SM00387 Histidine kinase-like ATPases CH55_3033 SM00388 His Kinase A (phosphoacceptor) domain CH55_3034 SM00448 cheY-homologous receiver domain CH55_3034 SM00862 Transcriptional regulatory protein, C terminal CH55_305 SM00822 CH55_305 CH55_3054 SM01321 CH55_3054 CH55_3055 SM00382 ATPases associated with a variety of cellular activities CH55_3061 SM00382 ATPases associated with a variety of cellular activities CH55_3061 SM01086 C-terminal, D2-small domain, of ClpB protein CH55_3064 SM00354 helix_turn _helix lactose operon repressor CH55_3066 SM00487 DEAD-like helicases superfamily CH55_3066 SM00490 helicase superfamily c-terminal domain CH55_3078 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH55_3085 SM00382 ATPases associated with a variety of cellular activities CH55_309 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH55_309 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH55_309 SM00493 CH55_309 CH55_3105 SM00382 ATPases associated with a variety of cellular activities CH55_3110 SM00382 ATPases associated with a variety of cellular activities CH55_3127 SM00507 HNH nucleases CH55_314 SM00014 Acid phosphatase homologues CH55_3141 SM00487 DEAD-like helicases superfamily CH55_3141 SM00490 helicase superfamily c-terminal domain CH55_3143 SM00357 Cold shock protein domain CH55_3143 SM00382 ATPases associated with a variety of cellular activities CH55_3143 SM00959 Rho termination factor, N-terminal domain CH55_3147 SM00984 UDP binding domain CH55_316 SM00028 Tetratricopeptide repeats CH55_3162 SM01321 CH55_3162 CH55_3168 SM01219 CH55_3168 CH55_318 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CH55_3182 SM00341 Helicase and RNase D C-terminal CH55_3182 SM00487 DEAD-like helicases superfamily CH55_3182 SM00490 helicase superfamily c-terminal domain CH55_3182 SM00956 CH55_3182 CH55_3201 SM00382 ATPases associated with a variety of cellular activities CH55_3201 SM00962 SRP54-type protein, GTPase domain CH55_3201 SM00963 SRP54-type protein, helical bundle domain CH55_3202 SM00382 ATPases associated with a variety of cellular activities CH55_3205 SM01321 CH55_3205 CH55_321 SM01007 Class II Aldolase and Adducin N-terminal domain CH55_3210 SM00382 ATPases associated with a variety of cellular activities CH55_3211 SM00382 ATPases associated with a variety of cellular activities CH55_3223 SM00382 ATPases associated with a variety of cellular activities CH55_3243 SM00382 ATPases associated with a variety of cellular activities CH55_3245 SM01004 Delta-aminolevulinic acid dehydratase CH55_3246 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH55_3246 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH55_3253 SM01321 CH55_3253 CH55_326 SM00357 Cold shock protein domain CH55_326 SM00955 CH55_326 CH55_3267 SM00382 ATPases associated with a variety of cellular activities CH55_3274 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH55_3274 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH55_3275 SM00649 Ribosomal protein L11/L12 CH55_3281 SM00663 RNA polymerase I subunit A N-terminus CH55_3283 SM00876 Biotin and Thiamin Synthesis associated domain CH55_329 SM00478 endonuclease III CH55_329 SM00525 CH55_329 CH55_3295 SM00411 bacterial (prokaryotic) histone like domain CH55_3297 SM01209 CH55_3297 CH55_3297 SM01210 CH55_3297 CH55_3298 SM00798 AICARFT/IMPCHase bienzyme CH55_3298 SM00851 MGS-like domain CH55_33 SM00062 Bacterial periplasmic substrate-binding proteins CH55_331 SM00900 CH55_331 CH55_3310 SM00823 Phosphopantetheine attachment site CH55_3310 SM00825 Beta-ketoacyl synthase CH55_3314 SM00364 Leucine-rich repeats, bacterial type CH55_3314 SM00369 Leucine-rich repeats, typical (most populated) subfamily CH55_3315 SM00364 Leucine-rich repeats, bacterial type CH55_3316 SM00364 Leucine-rich repeats, bacterial type CH55_3317 SM00869 Autotransporter beta-domain CH55_3323 SM00091 PAS domain CH55_3323 SM00267 diguanylate cyclase CH55_3324 SM00052 Putative diguanylate phosphodiesterase CH55_3327 SM01387 CH55_3327 CH55_333 SM00342 helix_turn_helix, arabinose operon control protein CH55_3331 SM00316 Ribosomal protein S1-like RNA-binding domain CH55_3331 SM00322 K homology RNA-binding domain CH55_3338 SM00382 ATPases associated with a variety of cellular activities CH55_3340 SM01103 CH55_3340 CH55_3343 SM00448 cheY-homologous receiver domain CH55_3343 SM00862 Transcriptional regulatory protein, C terminal CH55_3344 SM00387 Histidine kinase-like ATPases CH55_3344 SM00388 His Kinase A (phosphoacceptor) domain CH55_3363 SM00116 Domain in cystathionine beta-synthase and other proteins. CH55_3363 SM01091 Transporter associated domain CH55_3372 SM01321 CH55_3372 CH55_3379 SM00382 ATPases associated with a variety of cellular activities CH55_3382 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH55_3383 SM00316 Ribosomal protein S1-like RNA-binding domain CH55_3383 SM00357 Cold shock protein domain CH55_3383 SM00955 CH55_3383 CH55_3385 SM00788 Adenylosuccinate synthetase CH55_3387 SM00244 prohibitin homologues CH55_3388 SM00244 prohibitin homologues CH55_3392 SM00853 MutL C terminal dimerisation domain CH55_3392 SM01340 CH55_3392 CH55_3393 SM00257 Lysin motif CH55_3393 SM00646 CH55_3393 CH55_3400 SM00479 CH55_3400 CH55_341 SM00382 ATPases associated with a variety of cellular activities CH55_3410 SM00841 Elongation factor P, C-terminal CH55_3410 SM01185 CH55_3410 CH55_3414 SM00883 Chaperonin 10 Kd subunit CH55_3420 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH55_3425 SM01276 CH55_3425 CH55_3430 SM00342 helix_turn_helix, arabinose operon control protein CH55_3431 SM00342 helix_turn_helix, arabinose operon control protein CH55_3436 SM01007 Class II Aldolase and Adducin N-terminal domain CH55_3443 SM01005 Alanine racemase, C-terminal domain CH55_3444 SM00382 ATPases associated with a variety of cellular activities CH55_3445 SM00829 Enoylreductase CH55_3451 SM00563 Phosphate acyltransferases CH55_3454 SM00869 Autotransporter beta-domain CH55_3455 SM00060 Fibronectin type 3 domain CH55_346 SM00382 ATPases associated with a variety of cellular activities CH55_3474 SM00729 Elongator protein 3, MiaB family, Radical SAM CH55_348 SM00342 helix_turn_helix, arabinose operon control protein CH55_3481 SM00382 ATPases associated with a variety of cellular activities CH55_3494 SM00382 ATPases associated with a variety of cellular activities CH55_3503 SM00342 helix_turn_helix, arabinose operon control protein CH55_3507 SM00387 Histidine kinase-like ATPases CH55_3507 SM00388 His Kinase A (phosphoacceptor) domain CH55_3507 SM00448 cheY-homologous receiver domain CH55_3508 SM00421 helix_turn_helix, Lux Regulon CH55_3508 SM00448 cheY-homologous receiver domain CH55_3515 SM00382 ATPases associated with a variety of cellular activities CH55_3526 SM00382 ATPases associated with a variety of cellular activities CH55_3527 SM00382 ATPases associated with a variety of cellular activities CH55_3533 SM00869 Autotransporter beta-domain CH55_3534 SM00869 Autotransporter beta-domain CH55_3541 SM00354 helix_turn _helix lactose operon repressor CH55_3549 SM01006 Siderophore biosynthesis protein domain CH55_3556 SM00421 helix_turn_helix, Lux Regulon CH55_3569 SM00382 ATPases associated with a variety of cellular activities CH55_3569 SM01086 C-terminal, D2-small domain, of ClpB protein CH55_3583 SM00382 ATPases associated with a variety of cellular activities CH55_3589 SM00478 endonuclease III CH55_3589 SM00525 CH55_3589 CH55_3596 SM00729 Elongator protein 3, MiaB family, Radical SAM CH55_3598 SM01152 CH55_3598 CH55_36 SM00382 ATPases associated with a variety of cellular activities CH55_3602 SM00382 ATPases associated with a variety of cellular activities CH55_3605 SM00732 Likely ribonuclease with RNase H fold. CH55_3610 SM00731 SprT homologues. CH55_3616 SM00861 Transketolase, pyrimidine binding domain CH55_3617 SM01321 CH55_3617 CH55_3618 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH55_362 SM00354 helix_turn _helix lactose operon repressor CH55_3630 SM01011 Aminopeptidase P, N-terminal domain CH55_3644 SM00448 cheY-homologous receiver domain CH55_3644 SM00862 Transcriptional regulatory protein, C terminal CH55_3645 SM00387 Histidine kinase-like ATPases CH55_3645 SM00388 His Kinase A (phosphoacceptor) domain CH55_3651 SM00937 CH55_3651 CH55_3657 SM00530 Helix-turn-helix XRE-family like proteins CH55_3659 SM00530 Helix-turn-helix XRE-family like proteins CH55_3660 SM00778 Zinc-binding domain of primase-helicase CH55_3660 SM00885 D5 N terminal like CH55_367 SM00382 ATPases associated with a variety of cellular activities CH55_3681 SM00382 ATPases associated with a variety of cellular activities CH55_3682 SM00382 ATPases associated with a variety of cellular activities CH55_3691 SM00354 helix_turn _helix lactose operon repressor CH55_3694 SM00354 helix_turn _helix lactose operon repressor CH55_3711 SM00420 helix_turn_helix, Deoxyribose operon repressor CH55_3711 SM01134 CH55_3711 CH55_3715 SM00382 ATPases associated with a variety of cellular activities CH55_3718 SM00869 Autotransporter beta-domain CH55_3721 SM00947 Carbonic anhydrase CH55_3725 SM00382 ATPases associated with a variety of cellular activities CH55_3737 SM00862 Transcriptional regulatory protein, C terminal CH55_3740 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH55_3740 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH55_3741 SM00849 Metallo-beta-lactamase superfamily CH55_3745 SM00354 helix_turn _helix lactose operon repressor CH55_3754 SM00927 DNA mismatch repair enzyme MutH CH55_3756 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH55_3770 SM00646 CH55_3770 CH55_3773 SM00925 MltA specific insert domain CH55_378 SM00098 Alkaline phosphatase homologues CH55_3781 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH55_3781 SM00475 5'-3' exonuclease CH55_3785 SM01321 CH55_3785 CH55_3790 SM01321 CH55_3790 CH55_3792 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH55_38 SM00052 Putative diguanylate phosphodiesterase CH55_380 SM00100 Cyclic nucleotide-monophosphate binding domain CH55_380 SM00419 helix_turn_helix, cAMP Regulatory protein CH55_3801 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH55_3803 SM00935 Outer membrane protein (OmpH-like) CH55_3809 SM00481 DNA polymerase alpha chain like domain CH55_3812 SM00977 TilS substrate C-terminal domain CH55_3816 SM01322 CH55_3816 CH55_3824 SM00382 ATPases associated with a variety of cellular activities CH55_3824 SM00930 CH55_3824 CH55_383 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CH55_383 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CH55_3834 SM00257 Lysin motif CH55_3835 SM00849 Metallo-beta-lactamase superfamily CH55_3838 SM00479 CH55_3838 CH55_3843 SM00382 ATPases associated with a variety of cellular activities CH55_3850 SM00778 Zinc-binding domain of primase-helicase CH55_3857 SM01321 CH55_3857 CH55_387 SM00448 cheY-homologous receiver domain CH55_387 SM00862 Transcriptional regulatory protein, C terminal CH55_3870 SM00861 Transketolase, pyrimidine binding domain CH55_3873 SM00881 CoA binding domain CH55_388 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH55_388 SM00387 Histidine kinase-like ATPases CH55_388 SM00388 His Kinase A (phosphoacceptor) domain CH55_3893 SM00855 Phosphoglycerate mutase family CH55_390 SM01321 CH55_390 CH55_3902 SM00382 ATPases associated with a variety of cellular activities CH55_3907 SM00382 ATPases associated with a variety of cellular activities CH55_3911 SM00729 Elongator protein 3, MiaB family, Radical SAM CH55_3911 SM00876 Biotin and Thiamin Synthesis associated domain CH55_3915 SM00382 ATPases associated with a variety of cellular activities CH55_3916 SM00487 DEAD-like helicases superfamily CH55_3916 SM00490 helicase superfamily c-terminal domain CH55_3920 SM00729 Elongator protein 3, MiaB family, Radical SAM CH55_3925 SM01321 CH55_3925 CH55_3934 SM01321 CH55_3934 CH55_3937 SM00091 PAS domain CH55_3937 SM00387 Histidine kinase-like ATPases CH55_3937 SM00388 His Kinase A (phosphoacceptor) domain CH55_3938 SM00382 ATPases associated with a variety of cellular activities CH55_3938 SM00448 cheY-homologous receiver domain CH55_3944 SM00382 ATPases associated with a variety of cellular activities CH55_3947 SM00487 DEAD-like helicases superfamily CH55_3947 SM00490 helicase superfamily c-terminal domain CH55_395 SM00020 Trypsin-like serine protease CH55_396 SM00530 Helix-turn-helix XRE-family like proteins CH55_3964 SM00046 Diacylglycerol kinase catalytic domain (presumed) CH55_3967 SM00448 cheY-homologous receiver domain CH55_3967 SM00862 Transcriptional regulatory protein, C terminal CH55_3968 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH55_3968 SM00388 His Kinase A (phosphoacceptor) domain CH55_3973 SM00382 ATPases associated with a variety of cellular activities CH55_3974 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH55_398 SM00382 ATPases associated with a variety of cellular activities CH55_398 SM00487 DEAD-like helicases superfamily CH55_398 SM00490 helicase superfamily c-terminal domain CH55_398 SM00847 Helicase associated domain (HA2) Add an annotation CH55_3981 SM00924 MgtE intracellular N domain CH55_3987 SM00382 ATPases associated with a variety of cellular activities CH55_3995 SM01321 CH55_3995 CH55_4004 SM01130 CH55_4004 CH55_4006 SM01321 CH55_4006 CH55_4020 SM00382 ATPases associated with a variety of cellular activities CH55_4029 SM00421 helix_turn_helix, Lux Regulon CH55_4029 SM00448 cheY-homologous receiver domain CH55_4032 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH55_4036 SM00919 Malic enzyme, NAD binding domain CH55_4036 SM01274 CH55_4036 CH55_4042 SM00869 Autotransporter beta-domain CH55_4047 SM01130 CH55_4047 CH55_4049 SM00364 Leucine-rich repeats, bacterial type CH55_4049 SM00369 Leucine-rich repeats, typical (most populated) subfamily CH55_4057 SM00382 ATPases associated with a variety of cellular activities CH55_4060 SM00448 cheY-homologous receiver domain CH55_4060 SM00862 Transcriptional regulatory protein, C terminal CH55_4061 SM00387 Histidine kinase-like ATPases CH55_4061 SM00388 His Kinase A (phosphoacceptor) domain CH55_4062 SM00327 von Willebrand factor (vWF) type A domain CH55_4068 SM00450 Rhodanese Homology Domain CH55_4069 SM00382 ATPases associated with a variety of cellular activities CH55_4071 SM00448 cheY-homologous receiver domain CH55_4071 SM00862 Transcriptional regulatory protein, C terminal CH55_4072 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH55_4072 SM00387 Histidine kinase-like ATPases CH55_4072 SM00388 His Kinase A (phosphoacceptor) domain CH55_4074 SM00382 ATPases associated with a variety of cellular activities CH55_4077 SM01321 CH55_4077 CH55_4083 SM00771 ZipA, C-terminal domain (FtsZ-binding) CH55_4084 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH55_4084 SM00292 breast cancer carboxy-terminal domain CH55_4084 SM00532 Ligase N family CH55_4091 SM01321 CH55_4091 CH55_410 SM00890 Domain of unknown function CH55_4114 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH55_4118 SM00382 ATPases associated with a variety of cellular activities CH55_4123 SM00421 helix_turn_helix, Lux Regulon CH55_4132 SM00382 ATPases associated with a variety of cellular activities CH55_4132 SM01086 C-terminal, D2-small domain, of ClpB protein CH55_414 SM00422 helix_turn_helix, mercury resistance CH55_4162 SM00382 ATPases associated with a variety of cellular activities CH55_4174 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH55_4174 SM00475 5'-3' exonuclease CH55_4178 SM00244 prohibitin homologues CH55_418 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH55_4188 SM00062 Bacterial periplasmic substrate-binding proteins CH55_4194 SM01321 CH55_4194 CH55_420 SM01321 CH55_420 CH55_4201 SM00487 DEAD-like helicases superfamily CH55_4201 SM00490 helicase superfamily c-terminal domain CH55_4202 SM00470 ParB-like nuclease domain CH55_4203 SM00470 ParB-like nuclease domain CH55_4204 SM00382 ATPases associated with a variety of cellular activities CH55_421 SM00091 PAS domain CH55_421 SM00382 ATPases associated with a variety of cellular activities CH55_4214 SM00635 Bacterial Ig-like domain 2 CH55_4220 SM00635 Bacterial Ig-like domain 2 CH55_4226 SM00232 JAB/MPN domain CH55_423 SM00953 CH55_423 CH55_4233 SM00382 ATPases associated with a variety of cellular activities CH55_4242 SM00155 Phospholipase D. Active site motifs. CH55_4246 SM00857 Resolvase, N terminal domain CH55_4250 SM00470 ParB-like nuclease domain CH55_4251 SM00382 ATPases associated with a variety of cellular activities CH55_4259 SM00470 ParB-like nuclease domain CH55_4261 SM00382 ATPases associated with a variety of cellular activities CH55_4267 SM00342 helix_turn_helix, arabinose operon control protein CH55_4277 SM00481 DNA polymerase alpha chain like domain CH55_4282 SM00342 helix_turn_helix, arabinose operon control protein CH55_430 SM00382 ATPases associated with a variety of cellular activities CH55_4308 SM00364 Leucine-rich repeats, bacterial type CH55_4321 SM00470 ParB-like nuclease domain CH55_4335 SM00857 Resolvase, N terminal domain CH55_434 SM00382 ATPases associated with a variety of cellular activities CH55_435 SM00382 ATPases associated with a variety of cellular activities CH55_4357 SM00220 Serine/Threonine protein kinases, catalytic domain CH55_4361 SM00194 Protein tyrosine phosphatase, catalytic domain CH55_4361 SM00404 Protein tyrosine phosphatase, catalytic domain motif CH55_4376 SM00382 ATPases associated with a variety of cellular activities CH55_4380 SM00530 Helix-turn-helix XRE-family like proteins CH55_443 SM00363 S4 RNA-binding domain CH55_448 SM00347 helix_turn_helix multiple antibiotic resistance protein CH55_45 SM00354 helix_turn _helix lactose operon repressor CH55_454 SM00479 CH55_454 CH55_478 SM00382 ATPases associated with a variety of cellular activities CH55_499 SM00382 ATPases associated with a variety of cellular activities CH55_503 SM00411 bacterial (prokaryotic) histone like domain CH55_504 SM00873 B3/4 domain CH55_504 SM00874 tRNA synthetase B5 domain CH55_504 SM00896 Ferredoxin-fold anticodon binding domain CH55_509 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH55_515 SM00382 ATPases associated with a variety of cellular activities CH55_52 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH55_528 SM00382 ATPases associated with a variety of cellular activities CH55_533 SM00644 CH55_533 CH55_534 SM00346 helix_turn_helix isocitrate lyase regulation CH55_544 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH55_544 SM00245 tail specific protease CH55_545 SM00945 ProQ/FINO family CH55_550 SM00972 Spore Coat Protein U domain CH55_551 SM00972 Spore Coat Protein U domain CH55_552 SM00972 Spore Coat Protein U domain CH55_555 SM00972 Spore Coat Protein U domain CH55_557 SM01022 CH55_557 CH55_559 SM00382 ATPases associated with a variety of cellular activities CH55_561 SM00528 Domain in histone-like proteins of HNS family CH55_562 SM00984 UDP binding domain CH55_563 SM00448 cheY-homologous receiver domain CH55_573 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH55_573 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH55_573 SM00493 CH55_573 CH55_577 SM00870 CH55_577 CH55_581 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH55_584 SM00763 PrkA AAA domain CH55_59 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH55_592 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH55_60 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH55_60 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH55_603 SM00060 Fibronectin type 3 domain CH55_609 SM01040 BRO family, N-terminal domain CH55_613 SM00232 JAB/MPN domain CH55_619 SM00635 Bacterial Ig-like domain 2 CH55_625 SM00635 Bacterial Ig-like domain 2 CH55_642 SM01040 BRO family, N-terminal domain CH55_648 SM00382 ATPases associated with a variety of cellular activities CH55_660 SM00341 Helicase and RNase D C-terminal CH55_660 SM00474 3'-5' exonuclease CH55_664 SM00487 DEAD-like helicases superfamily CH55_664 SM00491 CH55_664 CH55_674 SM00257 Lysin motif CH55_676 SM00382 ATPases associated with a variety of cellular activities CH55_678 SM00382 ATPases associated with a variety of cellular activities CH55_679 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH55_690 SM00836 DALR anticodon binding domain CH55_690 SM01016 Arginyl tRNA synthetase N terminal dom CH55_692 SM00912 haemagglutination activity domain CH55_701 SM00481 DNA polymerase alpha chain like domain CH55_705 SM00382 ATPases associated with a variety of cellular activities CH55_717 SM00937 CH55_717 CH55_721 SM01400 CH55_721 CH55_727 SM00450 Rhodanese Homology Domain CH55_73 SM00354 helix_turn _helix lactose operon repressor CH55_734 SM00448 cheY-homologous receiver domain CH55_734 SM00862 Transcriptional regulatory protein, C terminal CH55_735 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH55_735 SM00387 Histidine kinase-like ATPases CH55_735 SM00388 His Kinase A (phosphoacceptor) domain CH55_746 SM00671 Sel1-like repeats. CH55_748 SM00671 Sel1-like repeats. CH55_766 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH55_766 SM00866 CH55_766 CH55_770 SM00382 ATPases associated with a variety of cellular activities CH55_774 SM00382 ATPases associated with a variety of cellular activities CH55_779 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH55_779 SM00866 CH55_779 CH55_8 SM00855 Phosphoglycerate mutase family CH55_809 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH55_809 SM00465 GIY-YIG type nucleases (URI domain) CH55_810 SM00421 helix_turn_helix, Lux Regulon CH55_810 SM00448 cheY-homologous receiver domain CH55_827 SM00382 ATPases associated with a variety of cellular activities CH55_829 SM00062 Bacterial periplasmic substrate-binding proteins CH55_829 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH55_837 SM00342 helix_turn_helix, arabinose operon control protein CH55_841 SM00478 endonuclease III CH55_848 SM00382 ATPases associated with a variety of cellular activities CH55_86 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH55_863 SM00382 ATPases associated with a variety of cellular activities CH55_866 SM01007 Class II Aldolase and Adducin N-terminal domain CH55_870 SM00047 Lysozyme subfamily 2 CH55_879 SM00858 CH55_879 CH55_882 SM00634 Bacterial Ig-like domain (group 1) CH55_883 SM01321 CH55_883 CH55_899 SM01022 CH55_899 CH55_9 SM00463 Small MutS-related domain CH55_901 SM00487 DEAD-like helicases superfamily CH55_901 SM00490 helicase superfamily c-terminal domain CH55_907 SM00903 Flavin reductase like domain CH55_91 SM00382 ATPases associated with a variety of cellular activities CH55_918 SM00347 helix_turn_helix multiple antibiotic resistance protein CH55_919 SM01091 Transporter associated domain CH55_926 SM00091 PAS domain CH55_927 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH55_927 SM00091 PAS domain CH55_927 SM00267 diguanylate cyclase CH55_931 SM00357 Cold shock protein domain CH55_94 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH55_94 SM00091 PAS domain CH55_941 SM00342 helix_turn_helix, arabinose operon control protein CH55_943 SM00382 ATPases associated with a variety of cellular activities CH55_944 SM00090 RIO-like kinase CH55_949 SM00382 ATPases associated with a variety of cellular activities CH55_951 SM00354 helix_turn _helix lactose operon repressor CH55_96 SM00382 ATPases associated with a variety of cellular activities CH55_961 SM00421 helix_turn_helix, Lux Regulon CH55_961 SM00448 cheY-homologous receiver domain CH55_971 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH55_977 SM00634 Bacterial Ig-like domain (group 1) CH55_98 SM00062 Bacterial periplasmic substrate-binding proteins CH55_98 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH55_984 SM00382 ATPases associated with a variety of cellular activities CH55_985 SM00382 ATPases associated with a variety of cellular activities CH55_997 SM01350 CH55_997