locus-tag class description y0001 PF00258 Flavodoxin y0002 PF01037 Lrp/AsnC ligand binding domain y0003 PF03590 Aspartate-ammonia ligase y0004 PF05762 VWA domain containing CoxE-like protein y0005 PF07728 AAA domain (dynein-related subfamily) y0005 PF17868 AAA lid domain y0005 PF12592 Protein of unknown function (DUF3763) y0006 PF02705 K+ potassium transporter y0007 PF05025 RbsD / FucU transport protein family y0008 PF00294 pfkB family carbohydrate kinase y0010 PF07690 Major Facilitator Superfamily y0011 PF00392 Bacterial regulatory proteins, gntR family y0011 PF07729 FCD domain y0013 PF04204 Homoserine O-succinyltransferase y0015 PF01274 Malate synthase y0016 PF00463 Isocitrate lyase family y0018 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) y0019 PF09339 IclR helix-turn-helix domain y0019 PF01614 Bacterial transcriptional regulator y0020 PF02607 B12 binding domain y0020 PF02965 Vitamin B12 dependent methionine synthase, activation domain y0020 PF00809 Pterin binding enzyme y0020 PF02574 Homocysteine S-methyltransferase y0020 PF02310 B12 binding domain y0021 PF13332 Hemagglutinin repeat y0021 PF05860 haemagglutination activity domain y0023 PF01842 ACT domain y0023 PF00696 Amino acid kinase family y0024 PF00342 Phosphoglucose isomerase y0025 PF06146 Phosphate-starvation-inducible E y0026 PF00528 Binding-protein-dependent transport system inner membrane component y0027 PF14785 Maltose transport system permease protein MalF P2 domain y0027 PF00528 Binding-protein-dependent transport system inner membrane component y0028 PF01547 Bacterial extracellular solute-binding protein y0031 PF17912 MalK OB fold domain y0031 PF00005 ABC transporter y0032 PF02264 LamB porin y0033 PF07148 Maltose operon periplasmic protein precursor (MalM) y0036 PF05638 Type VI secretion system effector, Hcp y0041 PF13333 Integrase core domain y0041 PF13276 HTH-like domain y0041 PF00665 Integrase core domain y0042 PF01695 IstB-like ATP binding protein y0043 PF00665 Integrase core domain y0043 PF02796 Helix-turn-helix domain of resolvase y0044 PF01797 Transposase IS200 like y0045 PF06005 Cell division protein ZapB y0046 PF00230 Major intrinsic protein y0047 PF00370 FGGY family of carbohydrate kinases, N-terminal domain y0047 PF02782 FGGY family of carbohydrate kinases, C-terminal domain y0048 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded y0049 PF00175 Oxidoreductase NAD-binding domain y0049 PF00970 Oxidoreductase FAD-binding domain y0050 PF05656 Protein of unknown function (DUF805) y0051 PF07305 Protein of unknown function (DUF1454) y0052 PF00121 Triosephosphate isomerase y0053 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y0053 PF03466 LysR substrate binding domain y0054 PF02585 GlcNAc-PI de-N-acetylase y0055 PF03737 Aldolase/RraA y0056 PF00939 Sodium:sulfate symporter transmembrane region y0059 PF00365 Phosphofructokinase y0060 PF16916 Dimerisation domain of Zinc Transporter y0060 PF01545 Cation efflux family y0062 PF04754 Putative transposase, YhgA-like y0065 PF00589 Phage integrase family y0065 PF02899 Phage integrase, N-terminal SAM-like domain y0066 PF07813 LTXXQ motif family protein y0067 PF00072 Response regulator receiver domain y0067 PF00486 Transcriptional regulatory protein, C terminal y0069 PF16527 Two-component sensor protein CpxA, periplasmic domain y0069 PF00672 HAMP domain y0069 PF00512 His Kinase A (phospho-acceptor) domain y0069 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y0070 PF12833 Helix-turn-helix domain y0070 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain y0070 PF02805 Metal binding domain of Ada y0070 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain y0071 PF00588 SpoU rRNA Methylase family y0072 PF00132 Bacterial transferase hexapeptide (six repeats) y0072 PF06426 Serine acetyltransferase, N-terminal y0073 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus y0073 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus y0074 PF02556 Preprotein translocase subunit SecB y0075 PF00462 Glutaredoxin y0076 PF00581 Rhodanese-like domain y0077 PF06415 BPG-independent PGAM N-terminus (iPGM_N) y0077 PF01676 Metalloenzyme superfamily y0078 PF01551 Peptidase family M23 y0080 PF08240 Alcohol dehydrogenase GroES-like domain y0080 PF00107 Zinc-binding dehydrogenase y0081 PF00155 Aminotransferase class I and II y0083 PF01370 NAD dependent epimerase/dehydratase family y0084 PF01075 Glycosyltransferase family 9 (heptosyltransferase) y0085 PF01075 Glycosyltransferase family 9 (heptosyltransferase) y0086 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) y0087 PF00535 Glycosyl transferase family 2 y0088 PF01467 Cytidylyltransferase-like y0090 PF06827 Zinc finger found in FPG and IleRS y0090 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain y0090 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain y0091 PF00471 Ribosomal protein L33 y0092 PF04002 RadC-like JAB domain y0093 PF04127 DNA / pantothenate metabolism flavoprotein y0093 PF02441 Flavoprotein y0094 PF00692 dUTPase y0095 PF00440 Bacterial regulatory proteins, tetR family y0096 PF00156 Phosphoribosyl transferase domain y0097 PF01138 3' exoribonuclease family, domain 1 y0097 PF03725 3' exoribonuclease family, domain 2 y0098 PF08340 Domain of unknown function (DUF1732) y0098 PF03755 YicC-like family, N-terminal region y0099 PF03458 UPF0126 domain y0100 PF03120 NAD-dependent DNA ligase OB-fold domain y0100 PF01653 NAD-dependent DNA ligase adenylation domain y0101 PF00625 Guanylate kinase y0102 PF01192 RNA polymerase Rpb6 y0103 PF13291 ACT domain y0103 PF04607 Region found in RelA / SpoT proteins y0103 PF02824 TGS domain y0104 PF00588 SpoU rRNA Methylase family y0104 PF12105 SpoU, rRNA methylase, C-terminal y0105 PF00271 Helicase conserved C-terminal domain y0105 PF17191 RecG wedge domain y0105 PF00270 DEAD/DEAH box helicase y0106 PF03616 Sodium/glutamate symporter y0107 PF00860 Permease family y0108 PF05170 AsmA family y0109 PF09500 Putative thioesterase (yiiD_Cterm) y0109 PF00583 Acetyltransferase (GNAT) family y0110 PF02796 Helix-turn-helix domain of resolvase y0110 PF00665 Integrase core domain y0111 PF01695 IstB-like ATP binding protein y0112 PF13409 Glutathione S-transferase, N-terminal domain y0113 PF03466 LysR substrate binding domain y0113 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y0115 PF02678 Pirin y0115 PF17954 Quercetinase C-terminal cupin domain y0117 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases y0118 PF04348 LppC putative lipoprotein y0119 PF02021 Uncharacterised protein family UPF0102 y0122 PF13580 SIS domain y0123 PF04972 BON domain y0124 PF00912 Transglycosylase y0126 PF18415 Histidine kinase receptor ArcB trans-membrane domain y0126 PF00072 Response regulator receiver domain y0126 PF00512 His Kinase A (phospho-acceptor) domain y0126 PF00989 PAS fold y0126 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y0126 PF01627 Hpt domain y0127 PF16199 Radical_SAM C-terminal domain y0127 PF04055 Radical SAM superfamily y0128 PF01493 GXGXG motif y0128 PF01645 Conserved region in glutamate synthase y0128 PF04898 Glutamate synthase central domain y0128 PF00310 Glutamine amidotransferases class-II y0129 PF07992 Pyridine nucleotide-disulphide oxidoreductase y0129 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster y0131 PF04386 Stringent starvation protein B y0132 PF02798 Glutathione S-transferase, N-terminal domain y0132 PF00043 Glutathione S-transferase, C-terminal domain y0133 PF00380 Ribosomal protein S9/S16 y0134 PF00572 Ribosomal protein L13 y0135 PF03969 AFG1-like ATPase y0136 PF06295 Protein of unknown function (DUF1043) y0137 PF13180 PDZ domain y0137 PF00595 PDZ domain y0138 PF01797 Transposase IS200 like y0139 PF13180 PDZ domain y0140 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) y0141 PF01722 BolA-like protein y0142 PF13466 STAS domain y0143 PF05494 MlaC protein y0144 PF02470 MlaD protein y0145 PF02405 Permease MlaE y0146 PF00005 ABC transporter y0147 PF01699 Sodium/calcium exchanger protein y0149 PF00571 CBS domain y0149 PF01380 SIS domain y0151 PF06835 Lipopolysaccharide-assembly, LptC-related y0152 PF03968 OstA-like protein y0153 PF00005 ABC transporter y0153 PF12399 Branched-chain amino acid ATP-binding cassette transporter y0154 PF04963 Sigma-54 factor, core binding domain y0154 PF04552 Sigma-54, DNA binding domain y0154 PF00309 Sigma-54 factor, Activator interacting domain (AID) y0155 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein y0156 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein y0157 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 y0158 PF03668 P-loop ATPase protein family y0159 PF00381 PTS HPr component phosphorylation site y0161 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain y0161 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain y0162 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain y0162 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain y0163 PF01042 Endoribonuclease L-PSP y0165 PF00356 Bacterial regulatory proteins, lacI family y0166 PF00367 phosphotransferase system, EIIB y0166 PF02378 Phosphotransferase system, EIIC y0167 PF00128 Alpha amylase, catalytic domain y0167 PF11941 Domain of unknown function (DUF3459) y0168 PF01272 Transcription elongation factor, GreA/GreB, C-term y0168 PF14760 Rnk N-terminus y0169 PF07361 Cytochrome b562 y0171 PF01523 Putative modulator of DNA gyrase y0172 PF04751 Protein of unknown function (DUF615) y0173 PF01337 Barstar (barnase inhibitor) y0175 PF00171 Aldehyde dehydrogenase family y0176 PF00171 Aldehyde dehydrogenase family y0177 PF04632 Fusaric acid resistance protein family y0178 PF13533 Biotin-lipoyl like y0179 PF07869 Protein of unknown function (DUF1656) y0180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y0180 PF03466 LysR substrate binding domain y0181 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y0181 PF03466 LysR substrate binding domain y0184 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain y0184 PF18413 Neuraminidase-like domain y0185 PF12256 Insecticide toxin TcdB middle/N-terminal region y0185 PF12255 Insecticide toxin TcdB middle/C-terminal region y0185 PF03534 Salmonella virulence plasmid 65kDa B protein y0190 PF18807 Tripartite Tc toxins repeat y0190 PF05785 Rho-activating domain of cytotoxic necrotizing factor y0191 PF14431 YwqJ-like deaminase y0191 PF18807 Tripartite Tc toxins repeat y0193 PF01523 Putative modulator of DNA gyrase y0194 PF00795 Carbon-nitrogen hydrolase y0195 PF13502 AsmA-like C-terminal region y0195 PF13116 Protein of unknown function y0196 PF10150 Ribonuclease E/G family y0196 PF00575 S1 RNA binding domain y0197 PF02545 Maf-like protein y0199 PF04093 rod shape-determining protein MreD y0201 PF04085 rod shape-determining protein MreC y0203 PF17157 Gammaproteobacterial periplasmic sensor domain y0203 PF00990 Diguanylate cyclase, GGDEF domain y0203 PF00563 EAL domain y0204 PF00107 Zinc-binding dehydrogenase y0204 PF08240 Alcohol dehydrogenase GroES-like domain y0205 PF00174 Oxidoreductase molybdopterin binding domain y0206 PF01794 Ferric reductase like transmembrane component y0207 PF01220 Dehydroquinase class II y0208 PF00364 Biotin-requiring enzyme y0209 PF02785 Biotin carboxylase C-terminal domain y0209 PF00289 Biotin carboxylase, N-terminal domain y0209 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain y0210 PF06196 Protein of unknown function (DUF997) y0211 PF00474 Sodium:solute symporter family y0213 PF01207 Dihydrouridine synthase (Dus) y0214 PF02954 Bacterial regulatory protein, Fis family y0217 PF07690 Major Facilitator Superfamily y0218 PF02627 Carboxymuconolactone decarboxylase family y0219 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase y0219 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase y0220 PF00753 Metallo-beta-lactamase superfamily y0221 PF05433 Glycine zipper 2TM domain y0223 PF00313 'Cold-shock' DNA-binding domain y0224 PF00313 'Cold-shock' DNA-binding domain y0225 PF01797 Transposase IS200 like y0229 PF02798 Glutathione S-transferase, N-terminal domain y0230 PF00571 CBS domain y0230 PF01380 SIS domain y0231 PF00370 FGGY family of carbohydrate kinases, N-terminal domain y0231 PF02782 FGGY family of carbohydrate kinases, C-terminal domain y0233 PF02653 Branched-chain amino acid transport system / permease component y0234 PF00005 ABC transporter y0236 PF03279 Bacterial lipid A biosynthesis acyltransferase y0238 PF00999 Sodium/hydrogen exchanger family y0239 PF00860 Permease family y0240 PF04221 RelB antitoxin y0242 PF00005 ABC transporter y0243 PF00528 Binding-protein-dependent transport system inner membrane component y0244 PF00296 Luciferase-like monooxygenase y0245 PF09084 NMT1/THI5 like y0246 PF03358 NADPH-dependent FMN reductase y0248 PF00294 pfkB family carbohydrate kinase y0249 PF05025 RbsD / FucU transport protein family y0250 PF02311 AraC-like ligand binding domain y0250 PF12833 Helix-turn-helix domain y0251 PF01408 Oxidoreductase family, NAD-binding Rossmann fold y0251 PF02894 Oxidoreductase family, C-terminal alpha/beta domain y0255 PF03527 RHS protein y0255 PF05593 RHS Repeat y0257 PF04717 Type VI secretion system, phage-baseplate injector y0265 PF03527 RHS protein y0265 PF05593 RHS Repeat y0265 PF14220 Domain of unknown function (DUF4329) y0268 PF04717 Type VI secretion system, phage-baseplate injector y0275 PF10431 C-terminal, D2-small domain, of ClpB protein y0275 PF07724 AAA domain (Cdc48 subfamily) y0275 PF00004 ATPase family associated with various cellular activities (AAA) y0275 PF17871 AAA lid domain y0283 PF13276 HTH-like domain y0283 PF00665 Integrase core domain y0283 PF13333 Integrase core domain y0284 PF00665 Integrase core domain y0284 PF02796 Helix-turn-helix domain of resolvase y0285 PF01695 IstB-like ATP binding protein y0286 PF00005 ABC transporter y0286 PF00664 ABC transporter transmembrane region y0286 PF03412 Peptidase C39 family y0287 PF00529 HlyD membrane-fusion protein of T1SS y0287 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion y0292 PF03737 Aldolase/RraA y0293 PF01040 UbiA prenyltransferase family y0294 PF00004 ATPase family associated with various cellular activities (AAA) y0294 PF07724 AAA domain (Cdc48 subfamily) y0294 PF10431 C-terminal, D2-small domain, of ClpB protein y0295 PF00227 Proteasome subunit y0296 PF05036 Sporulation related domain y0297 PF00356 Bacterial regulatory proteins, lacI family y0298 PF00270 DEAD/DEAH box helicase y0298 PF00271 Helicase conserved C-terminal domain y0298 PF17764 3′ DNA-binding domain (3′BD) y0298 PF18074 Primosomal protein N C-terminal domain y0298 PF18319 PriA DNA helicase Cys-rich region (CRR) domain y0299 PF01197 Ribosomal protein L31 y0300 PF05360 yiaA/B two helix domain y0301 PF01340 Met Apo-repressor, MetJ y0303 PF03447 Homoserine dehydrogenase, NAD binding domain y0303 PF00742 Homoserine dehydrogenase y0303 PF00696 Amino acid kinase family y0304 PF02219 Methylenetetrahydrofolate reductase y0305 PF13276 HTH-like domain y0305 PF13333 Integrase core domain y0305 PF00665 Integrase core domain y0308 PF00311 Phosphoenolpyruvate carboxylase y0309 PF07687 Peptidase dimerisation domain y0309 PF01546 Peptidase family M20/M25/M40 y0310 PF02774 Semialdehyde dehydrogenase, dimerisation domain y0310 PF01118 Semialdehyde dehydrogenase, NAD binding domain y0311 PF00696 Amino acid kinase family y0312 PF14698 Argininosuccinate lyase C-terminal y0312 PF00206 Lyase y0313 PF00593 TonB dependent receptor y0313 PF07715 TonB-dependent Receptor Plug Domain y0315 PF00005 ABC transporter y0315 PF00664 ABC transporter transmembrane region y0316 PF00529 HlyD membrane-fusion protein of T1SS y0317 PF03544 Gram-negative bacterial TonB protein C-terminal y0318 PF07992 Pyridine nucleotide-disulphide oxidoreductase y0318 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain y0319 PF08534 Redoxin y0319 PF00462 Glutaredoxin y0320 PF03466 LysR substrate binding domain y0320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y0321 PF07992 Pyridine nucleotide-disulphide oxidoreductase y0321 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain y0322 PF00440 Bacterial regulatory proteins, tetR family y0323 PF07226 Protein of unknown function (DUF1422) y0324 PF05958 tRNA (Uracil-5-)-methyltransferase y0325 PF07715 TonB-dependent Receptor Plug Domain y0325 PF00593 TonB dependent receptor y0326 PF01177 Asp/Glu/Hydantoin racemase y0328 PF13407 Periplasmic binding protein domain y0329 PF00005 ABC transporter y0330 PF02653 Branched-chain amino acid transport system / permease component y0331 PF02653 Branched-chain amino acid transport system / permease component y0332 PF03466 LysR substrate binding domain y0332 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y0333 PF04219 Protein of unknown function, DUF y0334 PF13335 Magnesium chelatase, subunit ChlI C-terminal y0334 PF01078 Magnesium chelatase, subunit ChlI y0335 PF08046 IlvGEDA operon leader peptide y0336 PF00205 Thiamine pyrophosphate enzyme, central domain y0336 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain y0336 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain y0337 PF01063 Amino-transferase class IV y0338 PF00920 Dehydratase family y0339 PF00585 C-terminal regulatory domain of Threonine dehydratase y0339 PF00291 Pyridoxal-phosphate dependent enzyme y0344 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y0344 PF03466 LysR substrate binding domain y0345 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain y0345 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain y0348 PF02753 Pili assembly chaperone PapD, C-terminal domain y0348 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain y0350 PF13953 PapC C-terminal domain y0350 PF00577 Outer membrane usher protein y0350 PF13954 PapC N-terminal domain y0351 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain y0351 PF02753 Pili assembly chaperone PapD, C-terminal domain y0353 PF00872 Transposase, Mutator family y0356 PF00580 UvrD/REP helicase N-terminal domain y0356 PF13361 UvrD-like helicase C-terminal domain y0359 PF00271 Helicase conserved C-terminal domain y0359 PF00270 DEAD/DEAH box helicase y0360 PF00085 Thioredoxin y0361 PF07497 Rho termination factor, RNA-binding domain y0361 PF07498 Rho termination factor, N-terminal domain y0361 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain y0362 PF00953 Glycosyl transferase family 4 y0363 PF02706 Chain length determinant protein y0364 PF02350 UDP-N-acetylglucosamine 2-epimerase y0365 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain y0365 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain y0365 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain y0366 PF16363 GDP-mannose 4,6 dehydratase y0367 PF00483 Nucleotidyl transferase y0369 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family y0370 PF01943 Polysaccharide biosynthesis protein y0371 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 y0372 PF06899 WzyE protein, O-antigen assembly polymerase y0373 PF03808 Glycosyl transferase WecB/TagA/CpsF family y0375 PF00324 Amino acid permease y0377 PF01797 Transposase IS200 like y0378 PF07719 Tetratricopeptide repeat y0378 PF07219 HemY protein N-terminus y0379 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase y0380 PF02602 Uroporphyrinogen-III synthase HemD y0381 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain y0381 PF03900 Porphobilinogen deaminase, C-terminal domain y0382 PF01295 Adenylate cyclase, class-I y0382 PF12633 Adenylate cyclase NT domain y0383 PF01491 Frataxin-like domain y0384 PF13627 Prokaryotic lipoprotein-attachment site y0385 PF01678 Diaminopimelate epimerase y0386 PF04340 Protein of unknown function, DUF484 y0387 PF00589 Phage integrase family y0387 PF02899 Phage integrase, N-terminal SAM-like domain y0388 PF13419 Haloacid dehalogenase-like hydrolase y0389 PF00580 UvrD/REP helicase N-terminal domain y0389 PF13361 UvrD-like helicase C-terminal domain y0392 PF09370 Phosphoenolpyruvate hydrolase-like y0393 PF01544 CorA-like Mg2+ transporter protein y0394 PF00892 EamA-like transporter family y0395 PF03061 Thioesterase superfamily y0396 PF02253 Phospholipase A1 y0397 PF00271 Helicase conserved C-terminal domain y0397 PF09382 RQC domain y0397 PF00270 DEAD/DEAH box helicase y0397 PF00570 HRDC domain y0397 PF16124 RecQ zinc-binding y0398 PF01810 LysE type translocator y0399 PF01810 LysE type translocator y0400 PF12146 Serine aminopeptidase, S33 y0403 PF03009 Glycerophosphoryl diester phosphodiesterase family y0404 PF04324 BFD-like [2Fe-2S] binding domain y0404 PF01266 FAD dependent oxidoreductase y0405 PF00890 FAD binding domain y0406 PF13183 4Fe-4S dicluster domain y0406 PF02754 Cysteine-rich domain y0407 PF08786 DcrB y0408 PF02592 Putative vitamin uptake transporter y0409 PF01206 Sulfurtransferase TusA y0410 PF00403 Heavy-metal-associated domain y0411 PF07947 YhhN family y0414 PF06611 Protein of unknown function (DUF1145) y0416 PF00448 SRP54-type protein, GTPase domain y0416 PF00448 SRP54-type protein, GTPase domain y0416 PF02881 SRP54-type protein, helical bundle domain y0416 PF02881 SRP54-type protein, helical bundle domain y0417 PF00005 ABC transporter y0418 PF18075 FtsX extracellular domain y0418 PF02687 FtsX-like permease family y0419 PF00140 Sigma-70 factor, region 1.2 y0419 PF04542 Sigma-70 region 2 y0419 PF04545 Sigma-70, region 4 y0420 PF01797 Transposase IS200 like y0421 PF12568 Acetyltransferase (GNAT) domain, PanZ y0422 PF13458 Periplasmic binding protein y0423 PF02653 Branched-chain amino acid transport system / permease component y0424 PF11862 Domain of unknown function (DUF3382) y0424 PF02653 Branched-chain amino acid transport system / permease component y0425 PF12399 Branched-chain amino acid ATP-binding cassette transporter y0425 PF00005 ABC transporter y0426 PF00005 ABC transporter y0434 PF13416 Bacterial extracellular solute-binding protein y0435 PF00528 Binding-protein-dependent transport system inner membrane component y0436 PF00528 Binding-protein-dependent transport system inner membrane component y0437 PF00005 ABC transporter y0437 PF17912 MalK OB fold domain y0438 PF03009 Glycerophosphoryl diester phosphodiesterase family y0439 PF03547 Membrane transport protein y0440 PF00892 EamA-like transporter family y0441 PF03466 LysR substrate binding domain y0441 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y0442 PF08267 Cobalamin-independent synthase, N-terminal domain y0442 PF01717 Cobalamin-independent synthase, Catalytic domain y0443 PF01738 Dienelactone hydrolase family y0444 PF01048 Phosphorylase superfamily y0446 PF13722 5TM C-terminal transporter carbon starvation CstA y0446 PF02554 Carbon starvation protein CstA y0447 PF09335 SNARE associated Golgi protein y0448 PF02646 RmuC family y0449 PF01209 ubiE/COQ5 methyltransferase family y0450 PF02036 SCP-2 sterol transfer family y0451 PF03109 ABC1 family y0452 PF02416 mttA/Hcf106 family y0454 PF00902 Sec-independent protein translocase protein (TatC) y0455 PF01026 TatD related DNase y0456 PF00665 Integrase core domain y0456 PF02796 Helix-turn-helix domain of resolvase y0457 PF01695 IstB-like ATP binding protein y0458 PF01026 TatD related DNase y0459 PF00490 Delta-aminolevulinic acid dehydratase y0460 PF02357 Transcription termination factor nusG y0461 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase y0462 PF00970 Oxidoreductase FAD-binding domain y0462 PF00175 Oxidoreductase NAD-binding domain y0463 PF00108 Thiolase, N-terminal domain y0463 PF02803 Thiolase, C-terminal domain y0464 PF00378 Enoyl-CoA hydratase/isomerase y0464 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain y0464 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain y0465 PF00557 Metallopeptidase family M24 y0466 PF01797 Transposase IS200 like y0467 PF09186 Domain of unknown function (DUF1949) y0467 PF01205 Uncharacterized protein family UPF0029 y0468 PF02386 Cation transport protein y0469 PF12724 Flavodoxin domain y0471 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain y0471 PF01565 FAD binding domain y0472 PF02237 Biotin protein ligase C terminal domain y0472 PF03099 Biotin/lipoate A/B protein ligase family y0472 PF08279 HTH domain y0473 PF00485 Phosphoribulokinase / Uridine kinase family y0474 PF13673 Acetyltransferase (GNAT) domain y0475 PF00665 Integrase core domain y0475 PF02796 Helix-turn-helix domain of resolvase y0476 PF01695 IstB-like ATP binding protein y0477 PF00009 Elongation factor Tu GTP binding domain y0477 PF03144 Elongation factor Tu domain 2 y0477 PF03143 Elongation factor Tu C-terminal domain y0478 PF00584 SecE/Sec61-gamma subunits of protein translocation complex y0479 PF02357 Transcription termination factor nusG y0479 PF00467 KOW motif y0480 PF00298 Ribosomal protein L11, RNA binding domain y0480 PF03946 Ribosomal protein L11, N-terminal domain y0481 PF00687 Ribosomal protein L1p/L10e family y0482 PF00466 Ribosomal protein L10 y0483 PF00542 Ribosomal protein L7/L12 C-terminal domain y0483 PF16320 Ribosomal protein L7/L12 dimerisation domain y0484 PF00562 RNA polymerase Rpb2, domain 6 y0484 PF04561 RNA polymerase Rpb2, domain 2 y0484 PF10385 RNA polymerase beta subunit external 1 domain y0484 PF04560 RNA polymerase Rpb2, domain 7 y0484 PF04563 RNA polymerase beta subunit y0484 PF04565 RNA polymerase Rpb2, domain 3 y0485 PF00623 RNA polymerase Rpb1, domain 2 y0485 PF05000 RNA polymerase Rpb1, domain 4 y0485 PF04997 RNA polymerase Rpb1, domain 1 y0485 PF04983 RNA polymerase Rpb1, domain 3 y0485 PF04998 RNA polymerase Rpb1, domain 5 y0486 PF01797 Transposase IS200 like y0487 PF06968 Biotin and Thiamin Synthesis associated domain y0487 PF04055 Radical SAM superfamily y0488 PF05690 Thiazole biosynthesis protein ThiG y0489 PF00899 ThiF family y0490 PF02581 Thiamine monophosphate synthase y0491 PF01964 Radical SAM ThiC family y0491 PF13667 ThiC-associated domain y0492 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ y0493 PF00293 NUDIX domain y0493 PF09297 NADH pyrophosphatase zinc ribbon domain y0496 PF01208 Uroporphyrinogen decarboxylase (URO-D) y0497 PF04493 Endonuclease V y0498 PF04222 Protein of unknown function (DUF416) y0499 PF00216 Bacterial DNA-binding protein y0500 PF07356 Protein of unknown function (DUF1481) y0501 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain y0501 PF02844 Phosphoribosylglycinamide synthetase, N domain y0501 PF02843 Phosphoribosylglycinamide synthetase, C domain y0502 PF01808 AICARFT/IMPCHase bienzyme y0502 PF02142 MGS-like domain y0503 PF01527 Transposase y0504 PF13276 HTH-like domain y0504 PF13683 Integrase core domain y0505 PF01695 IstB-like ATP binding protein y0506 PF02796 Helix-turn-helix domain of resolvase y0506 PF00665 Integrase core domain y0508 PF00474 Sodium:solute symporter family y0509 PF04341 Protein of unknown function, DUF485 y0510 PF16177 Acetyl-coenzyme A synthetase N-terminus y0510 PF00501 AMP-binding enzyme y0510 PF13193 AMP-binding enzyme C-terminal domain y0511 PF00375 Sodium:dicarboxylate symporter family y0512 PF00072 Response regulator receiver domain y0512 PF00196 Bacterial regulatory proteins, luxR family y0513 PF00672 HAMP domain y0513 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y0513 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) y0513 PF01627 Hpt domain y0513 PF00512 His Kinase A (phospho-acceptor) domain y0513 PF00072 Response regulator receiver domain y0517 PF12833 Helix-turn-helix domain y0517 PF14525 AraC-binding-like domain y0525 PF00771 FHIPEP family y0526 PF18269 T3SS EscN ATPase C-terminal domain y0526 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain y0529 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term y0530 PF00813 FliP family y0531 PF01313 Bacterial export proteins, family 3 y0532 PF01311 Bacterial export proteins, family 1 y0533 PF01312 FlhB HrpN YscU SpaS Family y0534 PF04143 Sulphur transport y0535 PF01206 Sulfurtransferase TusA y0536 PF03466 LysR substrate binding domain y0536 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y0537 PF03222 Tryptophan/tyrosine permease family y0538 PF01053 Cys/Met metabolism PLP-dependent enzyme y0539 PF00005 ABC transporter y0540 PF01032 FecCD transport family y0541 PF01497 Periplasmic binding protein y0542 PF05171 Haemin-degrading HemS.ChuX domain y0543 PF07715 TonB-dependent Receptor Plug Domain y0543 PF00593 TonB dependent receptor y0544 PF10636 Hemin uptake protein hemP y0545 PF13460 NAD(P)H-binding y0546 PF06228 Haem utilisation ChuX/HutX y0547 PF04055 Radical SAM superfamily y0551 PF15608 PELOTA RNA binding domain y0551 PF11202 Phosphoribosyl transferase (PRTase) y0555 PF02342 TerD domain y0556 PF02342 TerD domain y0557 PF05099 Tellurite resistance protein TerB y0558 PF03741 Integral membrane protein TerC family y0559 PF02342 TerD domain y0560 PF02342 TerD domain y0562 PF13953 PapC C-terminal domain y0562 PF13954 PapC N-terminal domain y0562 PF00577 Outer membrane usher protein y0563 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain y0566 PF01565 FAD binding domain y0566 PF08031 Berberine and berberine like y0567 PF12951 Passenger-associated-transport-repeat y0568 PF04345 Chorismate lyase y0569 PF01040 UbiA prenyltransferase family y0570 PF01553 Acyltransferase y0571 PF01219 Prokaryotic diacylglycerol kinase y0572 PF00717 Peptidase S24-like y0572 PF01726 LexA DNA binding domain y0573 PF01475 Ferric uptake regulator family y0574 PF01207 Dihydrouridine synthase (Dus) y0575 PF09583 Phage shock protein G (Phageshock_PspG) y0576 PF08240 Alcohol dehydrogenase GroES-like domain y0576 PF00107 Zinc-binding dehydrogenase y0577 PF03796 DnaB-like helicase C terminal domain y0577 PF00772 DnaB-like helicase N terminal domain y0578 PF01168 Alanine racemase, N-terminal domain y0578 PF00842 Alanine racemase, C-terminal domain y0579 PF00155 Aminotransferase class I and II y0580 PF17755 UvrA DNA-binding domain y0580 PF17760 UvrA interaction domain y0580 PF00005 ABC transporter y0582 PF00436 Single-strand binding protein family y0583 PF05336 L-rhamnose mutarotase y0584 PF00465 Iron-containing alcohol dehydrogenase y0585 PF00596 Class II Aldolase and Adducin N-terminal domain y0586 PF06134 L-rhamnose isomerase (RhaA) y0587 PF00370 FGGY family of carbohydrate kinases, N-terminal domain y0587 PF02782 FGGY family of carbohydrate kinases, C-terminal domain y0590 PF12833 Helix-turn-helix domain y0590 PF02311 AraC-like ligand binding domain y0591 PF02311 AraC-like ligand binding domain y0591 PF12833 Helix-turn-helix domain y0593 PF06379 L-rhamnose-proton symport protein (RhaT) y0595 PF03400 IS1 transposase y0599 PF07992 Pyridine nucleotide-disulphide oxidoreductase y0599 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster y0599 PF13247 4Fe-4S dicluster domain y0600 PF12800 4Fe-4S binding domain y0600 PF13247 4Fe-4S dicluster domain y0601 PF01568 Molydopterin dinucleotide binding domain y0601 PF00384 Molybdopterin oxidoreductase y0601 PF04879 Molybdopterin oxidoreductase Fe4S4 domain y0603 PF11412 Disulphide bond corrector protein DsbC y0603 PF02683 Cytochrome C biogenesis protein transmembrane region y0604 PF03091 CutA1 divalent ion tolerance protein y0605 PF03605 Anaerobic c4-dicarboxylate membrane transporter y0606 PF00206 Lyase y0606 PF10415 Fumarase C C-terminus y0607 PF04186 FxsA cytoplasmic membrane protein y0608 PF00166 Chaperonin 10 Kd subunit y0609 PF00118 TCP-1/cpn60 chaperonin family y0610 PF13698 Domain of unknown function (DUF4156) y0611 PF04055 Radical SAM superfamily y0612 PF01132 Elongation factor P (EF-P) OB domain y0612 PF08207 Elongation factor P (EF-P) KOW-like domain y0612 PF09285 Elongation factor P, C-terminal y0613 PF00893 Small Multidrug Resistance protein y0614 PF02313 Fumarate reductase subunit D y0615 PF02300 Fumarate reductase subunit C y0616 PF13183 4Fe-4S dicluster domain y0616 PF13085 2Fe-2S iron-sulfur cluster binding domain y0617 PF00890 FAD binding domain y0617 PF02910 Fumarate reductase flavoprotein C-term y0618 PF00152 tRNA synthetases class II (D, K and N) y0619 PF12795 Mechanosensitive ion channel porin domain y0619 PF12794 Mechanosensitive ion channel inner membrane domain 1 y0619 PF00924 Mechanosensitive ion channel y0620 PF02666 Phosphatidylserine decarboxylase y0622 PF03193 RsgA GTPase y0623 PF00929 Exonuclease y0624 PF08331 Domain of unknown function (DUF1730) y0625 PF03853 YjeF-related protein N-terminus y0625 PF01256 Carbohydrate kinase y0626 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE y0627 PF01520 N-acetylmuramoyl-L-alanine amidase y0628 PF08676 MutL C terminal dimerisation domain y0628 PF01119 DNA mismatch repair protein, C-terminal domain y0630 PF17209 Hfq protein y0632 PF13167 GTP-binding GTPase N-terminal y0632 PF16360 GTP-binding GTPase Middle Region y0632 PF01926 50S ribosome-binding GTPase y0633 PF01145 SPFH domain / Band 7 family y0633 PF12221 Bacterial membrane protein N terminal y0634 PF01145 SPFH domain / Band 7 family y0635 PF00709 Adenylosuccinate synthetase y0636 PF02082 Transcriptional regulator y0637 PF00575 S1 RNA binding domain y0637 PF17876 Cold shock domain y0637 PF08461 Ribonuclease R winged-helix domain y0637 PF08206 Ribonuclease B OB domain y0637 PF00773 RNB domain y0638 PF00588 SpoU rRNA Methylase family y0638 PF08032 RNA 2'-O ribose methyltransferase substrate binding y0639 PF18158 Adaptive response protein AidB N-terminal domain y0639 PF02770 Acyl-CoA dehydrogenase, middle domain y0639 PF00441 Acyl-CoA dehydrogenase, C-terminal domain y0642 PF01695 IstB-like ATP binding protein y0643 PF02796 Helix-turn-helix domain of resolvase y0643 PF00665 Integrase core domain y0644 PF00326 Prolyl oligopeptidase family y0645 PF01250 Ribosomal protein S6 y0646 PF01084 Ribosomal protein S18 y0647 PF03948 Ribosomal protein L9, C-terminal domain y0647 PF01281 Ribosomal protein L9, N-terminal domain y0648 PF01797 Transposase IS200 like y0650 PF04225 Opacity-associated protein A LysM-like domain y0650 PF08525 Opacity-associated protein A N-terminal motif y0651 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase y0651 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase y0652 PF04405 Domain of Unknown function (DUF542) y0652 PF01814 Hemerythrin HHE cation binding domain y0653 PF00149 Calcineurin-like phosphoesterase y0653 PF02872 5'-nucleotidase, C-terminal domain y0654 PF00459 Inositol monophosphatase family y0655 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) y0656 PF06526 Protein of unknown function (DUF1107) y0657 PF03471 Transporter associated domain y0657 PF01595 Cyclin M transmembrane N-terminal domain y0657 PF00571 CBS domain y0658 PF01625 Peptide methionine sulfoxide reductase y0659 PF17243 POTRA domain TamA domain 1 y0659 PF07244 Surface antigen variable number repeat y0659 PF01103 Surface antigen y0661 PF04357 TamB, inner membrane protein subunit of TAM complex y0662 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like y0663 PF00719 Inorganic pyrophosphatase y0664 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain y0665 PF08245 Mur ligase middle domain y0665 PF01225 Mur ligase family, catalytic domain y0665 PF02875 Mur ligase family, glutamate ligase domain y0667 PF02863 Arginine repressor, C-terminal domain y0667 PF01316 Arginine repressor, DNA binding domain y0668 PF00056 lactate/malate dehydrogenase, NAD binding domain y0668 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain y0669 PF13693 Winged helix-turn-helix DNA-binding y0671 PF00348 Polyprenyl synthetase y0672 PF00829 Ribosomal prokaryotic L21 protein y0673 PF01016 Ribosomal L27 protein y0674 PF00892 EamA-like transporter family y0675 PF01018 GTP1/OBG y0675 PF01926 50S ribosome-binding GTPase y0676 PF00512 His Kinase A (phospho-acceptor) domain y0676 PF00672 HAMP domain y0676 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y0677 PF00486 Transcriptional regulatory protein, C terminal y0677 PF00072 Response regulator receiver domain y0678 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family y0679 PF01272 Transcription elongation factor, GreA/GreB, C-term y0679 PF03449 Transcription elongation factor, N-terminal y0680 PF01985 CRS1 / YhbY (CRM) domain y0681 PF01728 FtsJ-like methyltransferase y0682 PF01434 Peptidase family M41 y0682 PF06480 FtsH Extracellular y0682 PF17862 AAA+ lid domain y0682 PF00004 ATPase family associated with various cellular activities (AAA) y0683 PF00809 Pterin binding enzyme y0684 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain y0684 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I y0684 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II y0684 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III y0685 PF03840 Preprotein translocase SecG subunit y0686 PF02576 RimP N-terminal domain y0686 PF17384 RimP C-terminal SH3 domain y0687 PF00575 S1 RNA binding domain y0687 PF08529 NusA N-terminal domain y0687 PF13184 NusA-like KH domain y0688 PF08364 Bacterial translation initiation factor IF-2 associated region y0688 PF04760 Translation initiation factor IF-2, N-terminal region y0688 PF11987 Translation-initiation factor 2 y0688 PF00009 Elongation factor Tu GTP binding domain y0688 PF03144 Elongation factor Tu domain 2 y0689 PF02033 Ribosome-binding factor A y0690 PF01509 TruB family pseudouridylate synthase (N terminal domain) y0690 PF16198 tRNA pseudouridylate synthase B C-terminal domain y0690 PF09157 Pseudouridine synthase II TruB, C-terminal y0691 PF00312 Ribosomal protein S15 y0693 PF13276 HTH-like domain y0693 PF13333 Integrase core domain y0693 PF00665 Integrase core domain y0694 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain y0694 PF01138 3' exoribonuclease family, domain 1 y0694 PF03725 3' exoribonuclease family, domain 2 y0694 PF00575 S1 RNA binding domain y0694 PF00013 KH domain y0695 PF13181 Tetratricopeptide repeat y0695 PF07719 Tetratricopeptide repeat y0696 PF00270 DEAD/DEAH box helicase y0696 PF03880 DbpA RNA binding domain y0696 PF00271 Helicase conserved C-terminal domain y0696 PF12343 Cold shock protein DEAD box A y0699 PF01381 Helix-turn-helix y0700 PF00296 Luciferase-like monooxygenase y0702 PF00529 HlyD membrane-fusion protein of T1SS y0702 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion y0703 PF00873 AcrB/AcrD/AcrF family y0704 PF08139 Prokaryotic membrane lipoprotein lipid attachment site y0704 PF02321 Outer membrane efflux protein y0708 PF13508 Acetyltransferase (GNAT) domain y0709 PF01541 GIY-YIG catalytic domain y0712 PF13416 Bacterial extracellular solute-binding protein y0714 PF00528 Binding-protein-dependent transport system inner membrane component y0715 PF00005 ABC transporter y0715 PF17912 MalK OB fold domain y0715 PF03459 TOBE domain y0718 PF13460 NAD(P)H-binding y0720 PF12706 Beta-lactamase superfamily domain y0722 PF07969 Amidohydrolase family y0723 PF00005 ABC transporter y0725 PF00005 ABC transporter y0726 PF06007 Phosphonate metabolism protein PhnJ y0727 PF05861 Bacterial phosphonate metabolism protein (PhnI) y0728 PF05845 Bacterial phosphonate metabolism protein (PhnH) y0729 PF06754 Phosphonate metabolism protein PhnG y0730 PF07702 UTRA domain y0730 PF00392 Bacterial regulatory proteins, gntR family y0733 PF13597 Anaerobic ribonucleoside-triphosphate reductase y0733 PF03477 ATP cone domain y0734 PF00005 ABC transporter y0734 PF08352 Oligopeptide/dipeptide transporter, C-terminal region y0735 PF00005 ABC transporter y0735 PF08352 Oligopeptide/dipeptide transporter, C-terminal region y0736 PF00528 Binding-protein-dependent transport system inner membrane component y0736 PF12911 N-terminal TM domain of oligopeptide transport permease C y0737 PF00528 Binding-protein-dependent transport system inner membrane component y0739 PF04074 YhcH/YjgK/YiaL y0740 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain y0740 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain y0741 PF06877 Regulator of ribonuclease activity B y0742 PF00583 Acetyltransferase (GNAT) family y0743 PF10458 Valyl tRNA synthetase tRNA binding arm y0743 PF08264 Anticodon-binding domain of tRNA y0743 PF00133 tRNA synthetases class I (I, L, M and V) y0745 PF04364 DNA polymerase III chi subunit, HolC y0746 PF00883 Cytosol aminopeptidase family, catalytic domain y0746 PF02789 Cytosol aminopeptidase family, N-terminal domain y0747 PF03739 Lipopolysaccharide export system permease LptF/LptG y0748 PF03739 Lipopolysaccharide export system permease LptF/LptG y0749 PF13356 Arm DNA-binding domain y0749 PF00589 Phage integrase family y0751 PF01119 DNA mismatch repair protein, C-terminal domain y0751 PF08676 MutL C terminal dimerisation domain y0752 PF01695 IstB-like ATP binding protein y0753 PF00665 Integrase core domain y0753 PF02796 Helix-turn-helix domain of resolvase y0754 PF01797 Transposase IS200 like y0755 PF03884 DNA gyrase inhibitor YacG y0756 PF07072 Cell division protein y0757 PF01121 Dephospho-CoA kinase y0758 PF00478 IMP dehydrogenase / GMP reductase domain y0759 PF00482 Type II secretion system (T2SS), protein F y0760 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain y0760 PF00437 Type II/IV secretion system protein y0761 PF07963 Prokaryotic N-terminal methylation motif y0762 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain y0762 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain y0763 PF01510 N-acetylmuramoyl-L-alanine amidase y0764 PF17113 Regulatory signalling modulator protein AmpE y0765 PF00324 Amino acid permease y0766 PF07729 FCD domain y0766 PF00392 Bacterial regulatory proteins, gntR family y0767 PF00456 Transketolase, thiamine diphosphate binding domain y0767 PF17831 Pyruvate dehydrogenase E1 component middle domain y0768 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) y0768 PF00364 Biotin-requiring enzyme y0768 PF02817 e3 binding domain y0769 PF07992 Pyridine nucleotide-disulphide oxidoreductase y0769 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain y0770 PF01797 Transposase IS200 like y0771 PF06434 Aconitate hydratase 2 N-terminus y0771 PF00330 Aconitase family (aconitate hydratase) y0771 PF11791 Aconitate B N-terminal domain y0772 PF06062 Uncharacterised protein family (UPF0231) y0773 PF00892 EamA-like transporter family y0774 PF02675 S-adenosylmethionine decarboxylase y0775 PF17284 Spermidine synthase tetramerisation domain y0776 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) y0777 PF00394 Multicopper oxidase y0777 PF07731 Multicopper oxidase y0777 PF07732 Multicopper oxidase y0777 PF10518 TAT (twin-arginine translocation) pathway signal sequence y0778 PF00156 Phosphoribosyl transferase domain y0779 PF00484 Carbonic anhydrase y0780 PF00005 ABC transporter y0781 PF01061 ABC-2 type transporter y0783 PF01522 Polysaccharide deacetylase y0784 PF02261 Aspartate decarboxylase y0785 PF02569 Pantoate-beta-alanine ligase y0786 PF02548 Ketopantoate hydroxymethyltransferase y0787 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) y0788 PF12626 Polymerase A arginine-rich C-terminus y0788 PF12627 Probable RNA and SrmB- binding site of polymerase A y0788 PF01743 Poly A polymerase head domain y0789 PF00749 tRNA synthetases class I (E and Q), catalytic domain y0790 PF01258 Prokaryotic dksA/traR C4-type zinc finger y0792 PF03749 Sugar fermentation stimulation protein RE domain y0792 PF17746 SfsA N-terminal OB domain y0793 PF02834 LigT like Phosphoesterase y0794 PF08482 ATP-dependent helicase C-terminal y0794 PF00270 DEAD/DEAH box helicase y0794 PF00271 Helicase conserved C-terminal domain y0794 PF04408 Helicase associated domain (HA2) y0795 PF00905 Penicillin binding protein transpeptidase domain y0795 PF14814 Bifunctional transglycosylase second domain y0795 PF00912 Transglycosylase y0795 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal y0796 PF00005 ABC transporter y0797 PF01497 Periplasmic binding protein y0798 PF01032 FecCD transport family y0799 PF00202 Aminotransferase class-III y0800 PF00654 Voltage gated chloride channel y0801 PF01521 Iron-sulphur cluster biosynthesis y0803 PF03458 UPF0126 domain y0804 PF01497 Periplasmic binding protein y0805 PF01048 Phosphorylase superfamily y0806 PF13286 Phosphohydrolase-associated domain y0806 PF01966 HD domain y0807 PF00595 PDZ domain y0808 PF00512 His Kinase A (phospho-acceptor) domain y0808 PF00672 HAMP domain y0808 PF00072 Response regulator receiver domain y0808 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y0808 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) y0808 PF01627 Hpt domain y0810 PF01938 TRAM domain y0810 PF05958 tRNA (Uracil-5-)-methyltransferase y0811 PF02824 TGS domain y0811 PF13291 ACT domain y0811 PF04607 Region found in RelA / SpoT proteins y0812 PF03819 MazG nucleotide pyrophosphohydrolase domain y0813 PF00117 Glutamine amidotransferase class-I y0813 PF06418 CTP synthase N-terminus y0814 PF00113 Enolase, C-terminal TIM barrel domain y0814 PF03952 Enolase, N-terminal domain y0815 PF00080 Copper/zinc superoxide dismutase (SODC) y0816 PF04055 Radical SAM superfamily y0817 PF01242 6-pyruvoyl tetrahydropterin synthase y0818 PF00667 FAD binding domain y0818 PF00175 Oxidoreductase NAD-binding domain y0818 PF00258 Flavodoxin y0819 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain y0819 PF01077 Nitrite and sulphite reductase 4Fe-4S domain y0823 PF01507 Phosphoadenosine phosphosulfate reductase family y0824 PF00009 Elongation factor Tu GTP binding domain y0826 PF12084 Protein of unknown function (DUF3561) y0827 PF04977 Septum formation initiator y0828 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase y0829 PF02542 YgbB family y0830 PF01142 tRNA pseudouridine synthase D (TruD) y0831 PF01975 Survival protein SurE y0833 PF01476 LysM domain y0833 PF01551 Peptidase family M23 y0834 PF00140 Sigma-70 factor, region 1.2 y0834 PF04542 Sigma-70 region 2 y0834 PF04539 Sigma-70 region 3 y0834 PF04545 Sigma-70, region 4 y0835 PF05190 MutS family domain IV y0835 PF00488 MutS domain V y0835 PF05192 MutS domain III y0835 PF05188 MutS domain II y0835 PF01624 MutS domain I y0837 PF02502 Ribose/Galactose Isomerase y0838 PF08240 Alcohol dehydrogenase GroES-like domain y0838 PF00107 Zinc-binding dehydrogenase y0840 PF02733 Dak1 domain y0842 PF02734 DAK2 domain y0843 PF04198 Putative sugar-binding domain y0843 PF13936 Helix-turn-helix domain y0844 PF02040 Arsenical pump membrane protein y0845 PF01022 Bacterial regulatory protein, arsR family y0847 PF00497 Bacterial extracellular solute-binding proteins, family 3 y0848 PF03150 Di-haem cytochrome c peroxidase y0848 PF00034 Cytochrome c y0848 PF14376 Haem-binding domain y0850 PF07715 TonB-dependent Receptor Plug Domain y0850 PF00593 TonB dependent receptor y0852 PF00557 Metallopeptidase family M24 y0854 PF05681 Fumarate hydratase (Fumerase) y0854 PF05683 Fumarase C-terminus y0855 PF00370 FGGY family of carbohydrate kinases, N-terminal domain y0855 PF02782 FGGY family of carbohydrate kinases, C-terminal domain y0856 PF01261 Xylose isomerase-like TIM barrel y0857 PF02653 Branched-chain amino acid transport system / permease component y0858 PF02653 Branched-chain amino acid transport system / permease component y0859 PF00005 ABC transporter y0860 PF01797 Transposase IS200 like y0862 PF00455 DeoR C terminal sensor domain y0862 PF08220 DeoR-like helix-turn-helix domain y0863 PF00596 Class II Aldolase and Adducin N-terminal domain y0864 PF00384 Molybdopterin oxidoreductase y0864 PF04879 Molybdopterin oxidoreductase Fe4S4 domain y0864 PF01568 Molydopterin dinucleotide binding domain y0865 PF12800 4Fe-4S binding domain y0865 PF13247 4Fe-4S dicluster domain y0866 PF04976 DMSO reductase anchor subunit (DmsC) y0867 PF02613 Nitrate reductase delta subunit y0868 PF01292 Prokaryotic cytochrome b561 y0869 PF07361 Cytochrome b562 y0870 PF00141 Peroxidase y0873 PF00005 ABC transporter y0874 PF02653 Branched-chain amino acid transport system / permease component y0876 PF02782 FGGY family of carbohydrate kinases, C-terminal domain y0876 PF00370 FGGY family of carbohydrate kinases, N-terminal domain y0879 PF07690 Major Facilitator Superfamily y0880 PF02464 Competence-damaged protein y0881 PF00154 recA bacterial DNA recombination protein y0882 PF02631 RecX family y0883 PF01411 tRNA synthetases class II (A) y0883 PF02272 DHHA1 domain y0883 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain y0884 PF02599 Global regulator protein family y0885 PF13419 Haloacid dehalogenase-like hydrolase y0886 PF09335 SNARE associated Golgi protein y0887 PF04262 Glutamate-cysteine ligase y0888 PF02664 S-Ribosylhomocysteinase (LuxS) y0889 PF01797 Transposase IS200 like y0890 PF01595 Cyclin M transmembrane N-terminal domain y0890 PF03471 Transporter associated domain y0890 PF00571 CBS domain y0891 PF01578 Cytochrome C assembly protein y0892 PF00448 SRP54-type protein, GTPase domain y0892 PF02978 Signal peptide binding domain y0892 PF02881 SRP54-type protein, helical bundle domain y0894 PF00886 Ribosomal protein S16 y0895 PF01782 RimM N-terminal domain y0895 PF05239 PRC-barrel domain y0896 PF01746 tRNA (Guanine-1)-methyltransferase y0897 PF01245 Ribosomal protein L19 y0898 PF01797 Transposase IS200 like y0899 PF04338 Protein of unknown function, DUF481 y0901 PF03605 Anaerobic c4-dicarboxylate membrane transporter y0902 PF00072 Response regulator receiver domain y0902 PF04397 LytTr DNA-binding domain y0903 PF00793 DAHP synthetase I family y0904 PF02153 Prephenate dehydrogenase y0904 PF01817 Chorismate mutase type II y0905 PF01695 IstB-like ATP binding protein y0906 PF02796 Helix-turn-helix domain of resolvase y0906 PF00665 Integrase core domain y0908 PF01797 Transposase IS200 like y0910 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein y0911 PF13525 Outer membrane lipoprotein y0912 PF01479 S4 domain y0912 PF00849 RNA pseudouridylate synthase y0914 PF00004 ATPase family associated with various cellular activities (AAA) y0914 PF07724 AAA domain (Cdc48 subfamily) y0914 PF17871 AAA lid domain y0914 PF02861 Clp amino terminal domain, pathogenicity island component y0914 PF10431 C-terminal, D2-small domain, of ClpB protein y0915 PF10043 Predicted periplasmic lipoprotein (DUF2279) y0916 PF13091 PLD-like domain y0917 PF13380 CoA binding domain y0917 PF13607 Succinyl-CoA ligase like flavodoxin domain y0917 PF00583 Acetyltransferase (GNAT) family y0919 PF00085 Thioredoxin y0920 PF08032 RNA 2'-O ribose methyltransferase substrate binding y0920 PF00588 SpoU rRNA Methylase family y0921 PF07690 Major Facilitator Superfamily y0922 PF00529 HlyD membrane-fusion protein of T1SS y0922 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion y0923 PF01047 MarR family y0924 PF05437 Branched-chain amino acid transport protein (AzlD) y0925 PF03591 AzlC protein y0926 PF07690 Major Facilitator Superfamily y0928 PF01425 Amidase y0932 PF00497 Bacterial extracellular solute-binding proteins, family 3 y0933 PF00528 Binding-protein-dependent transport system inner membrane component y0935 PF00005 ABC transporter y0936 PF01695 IstB-like ATP binding protein y0937 PF02796 Helix-turn-helix domain of resolvase y0937 PF00665 Integrase core domain y0939 PF07687 Peptidase dimerisation domain y0939 PF01546 Peptidase family M20/M25/M40 y0941 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB y0941 PF08479 POTRA domain, ShlB-type y0942 PF05860 haemagglutination activity domain y0944 PF18254 HMW1 domain 2 y0944 PF18071 HMW1C N-terminal y0946 PF00441 Acyl-CoA dehydrogenase, C-terminal domain y0946 PF02771 Acyl-CoA dehydrogenase, N-terminal domain y0946 PF09317 Domain of unknown function (DUF1974) y0947 PF13580 SIS domain y0948 PF13230 Glutamine amidotransferases class-II y0949 PF03734 L,D-transpeptidase catalytic domain y0951 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) y0951 PF11973 NQRA C-terminal domain y0952 PF03116 NQR2, RnfD, RnfE family y0953 PF04205 FMN-binding domain y0954 PF02508 Rnf-Nqr subunit, membrane protein y0955 PF02508 Rnf-Nqr subunit, membrane protein y0956 PF00970 Oxidoreductase FAD-binding domain y0956 PF00111 2Fe-2S iron-sulfur cluster binding domain y0956 PF00175 Oxidoreductase NAD-binding domain y0957 PF02424 ApbE family y0958 PF03009 Glycerophosphoryl diester phosphodiesterase family y0959 PF11798 IMS family HHH motif y0959 PF00817 impB/mucB/samB family y0959 PF11799 impB/mucB/samB family C-terminal domain y0960 PF07687 Peptidase dimerisation domain y0960 PF01546 Peptidase family M20/M25/M40 y0961 PF03466 LysR substrate binding domain y0961 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y0963 PF00156 Phosphoribosyl transferase domain y0965 PF07417 Sigma factor-binding transcriptional regulator Crl y0966 PF01472 PUA domain y0966 PF00696 Amino acid kinase family y0967 PF00171 Aldehyde dehydrogenase family y0968 PF07238 PilZ domain y0968 PF07317 Flagellar regulator YcgR y0970 PF08241 Methyltransferase domain y0972 PF01202 Shikimate kinase y0973 PF06865 Pyrimidine/purine nucleoside phosphorylase y0974 PF04381 Putative exonuclease, RdgC y0975 PF00480 ROK family y0976 PF13476 AAA domain y0977 PF00149 Calcineurin-like phosphoesterase y0977 PF12320 Type 5 capsule protein repressor C-terminal domain y0978 PF00486 Transcriptional regulatory protein, C terminal y0978 PF00072 Response regulator receiver domain y0979 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y0979 PF00512 His Kinase A (phospho-acceptor) domain y0979 PF00989 PAS fold y0979 PF11808 Phosphate regulon sensor protein PhoR y0980 PF12849 PBP superfamily domain y0981 PF05525 Branched-chain amino acid transport protein y0982 PF00324 Amino acid permease y0983 PF00128 Alpha amylase, catalytic domain y0983 PF02903 Alpha amylase, N-terminal ig-like domain y0988 PF00578 AhpC/TSA family y0988 PF10417 C-terminal domain of 1-Cys peroxiredoxin y0989 PF04336 Acyl carrier protein phosphodiesterase y0990 PF02547 Queuosine biosynthesis protein y0991 PF01702 Queuine tRNA-ribosyltransferase y0992 PF02699 Preprotein translocase subunit y0993 PF13721 SecD export protein N-terminal TM region y0993 PF07549 SecD/SecF GG Motif y0993 PF02355 Protein export membrane protein y0994 PF02355 Protein export membrane protein y0994 PF07549 SecD/SecF GG Motif y0995 PF01797 Transposase IS200 like y0999 PF03477 ATP cone domain y1000 PF01872 RibD C-terminal domain y1000 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region y1001 PF00885 6,7-dimethyl-8-ribityllumazine synthase y1002 PF01029 NusB family y1003 PF02769 AIR synthase related protein, C-terminal domain y1003 PF00586 AIR synthase related protein, N-terminal domain y1004 PF04608 Phosphatidylglycerophosphatase A y1005 PF00665 Integrase core domain y1005 PF02796 Helix-turn-helix domain of resolvase y1006 PF01695 IstB-like ATP binding protein y1007 PF01797 Transposase IS200 like y1008 PF02779 Transketolase, pyrimidine binding domain y1008 PF02780 Transketolase, C-terminal domain y1008 PF13292 1-deoxy-D-xylulose-5-phosphate synthase y1009 PF00348 Polyprenyl synthetase y1010 PF02609 Exonuclease VII small subunit y1012 PF02568 Thiamine biosynthesis protein (ThiI) y1012 PF02926 THUMP domain y1013 PF01965 DJ-1/PfpI family y1014 PF08546 Ketopantoate reductase PanE/ApbA C terminal y1014 PF02558 Ketopantoate reductase PanE/ApbA y1016 PF04461 Protein of unknown function (DUF520) y1017 PF07690 Major Facilitator Superfamily y1018 PF01040 UbiA prenyltransferase family y1019 PF00510 Cytochrome c oxidase subunit III y1020 PF00115 Cytochrome C and Quinol oxidase polypeptide I y1021 PF00116 Cytochrome C oxidase subunit II, periplasmic domain y1021 PF06481 COX Aromatic Rich Motif y1022 PF03502 Nucleoside-specific channel-forming protein, Tsx y1023 PF07690 Major Facilitator Superfamily y1024 PF08139 Prokaryotic membrane lipoprotein lipid attachment site y1024 PF03923 Uncharacterized lipoprotein y1025 PF01722 BolA-like protein y1026 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase y1026 PF05697 Bacterial trigger factor protein (TF) y1026 PF05698 Bacterial trigger factor protein (TF) C-terminus y1027 PF00574 Clp protease y1028 PF07724 AAA domain (Cdc48 subfamily) y1028 PF06689 ClpX C4-type zinc finger y1028 PF10431 C-terminal, D2-small domain, of ClpB protein y1029 PF05362 Lon protease (S16) C-terminal proteolytic domain y1029 PF00004 ATPase family associated with various cellular activities (AAA) y1029 PF02190 ATP-dependent protease La (LON) substrate-binding domain y1030 PF00216 Bacterial DNA-binding protein y1031 PF13145 PPIC-type PPIASE domain y1034 PF06508 Queuosine biosynthesis protein QueC y1035 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle y1035 PF12793 Sugar transport-related sRNA regulator N-term y1037 PF00291 Pyridoxal-phosphate dependent enzyme y1038 PF01037 Lrp/AsnC ligand binding domain y1038 PF13404 AsnC-type helix-turn-helix domain y1039 PF00005 ABC transporter y1039 PF00664 ABC transporter transmembrane region y1040 PF00664 ABC transporter transmembrane region y1040 PF00005 ABC transporter y1041 PF00543 Nitrogen regulatory protein P-II y1042 PF00909 Ammonium Transporter Family y1044 PF09619 Type III secretion system lipoprotein chaperone (YscW) y1045 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain y1046 PF05321 Haemolysin expression modulating protein y1047 PF10757 Biofilm formation regulator YbaJ y1048 PF01197 Ribosomal protein L31 y1049 PF00873 AcrB/AcrD/AcrF family y1050 PF00529 HlyD membrane-fusion protein of T1SS y1050 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion y1051 PF08361 MAATS-type transcriptional repressor, C-terminal region y1051 PF00440 Bacterial regulatory proteins, tetR family y1052 PF02635 DsrE/DsrF-like family y1054 PF12795 Mechanosensitive ion channel porin domain y1054 PF12794 Mechanosensitive ion channel inner membrane domain 1 y1054 PF00924 Mechanosensitive ion channel y1055 PF10689 Protein of unknown function (DUF2496) y1058 PF04304 Protein of unknown function (DUF454) y1059 PF00156 Phosphoribosyl transferase domain y1060 PF12170 DNA polymerase III tau subunit V interacting with alpha y1060 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding y1060 PF12169 DNA polymerase III subunits gamma and tau domain III y1061 PF02575 YbaB/EbfC DNA-binding family y1062 PF13662 Toprim domain y1062 PF02132 RecR protein y1064 PF00183 Hsp90 protein y1064 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y1065 PF05191 Adenylate kinase, active site lid y1066 PF00762 Ferrochelatase y1067 PF00970 Oxidoreductase FAD-binding domain y1067 PF00175 Oxidoreductase NAD-binding domain y1067 PF00111 2Fe-2S iron-sulfur cluster binding domain y1068 PF00483 Nucleotidyl transferase y1069 PF16363 GDP-mannose 4,6 dehydratase y1070 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family y1071 PF01370 NAD dependent epimerase/dehydratase family y1078 PF00534 Glycosyl transferases group 1 y1078 PF13439 Glycosyltransferase Family 4 y1080 PF01370 NAD dependent epimerase/dehydratase family y1081 PF01050 Mannose-6-phosphate isomerase y1081 PF00483 Nucleotidyl transferase y1082 PF00535 Glycosyl transferase family 2 y1083 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain y1083 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I y1083 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II y1083 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III y1084 PF02706 Chain length determinant protein y1085 PF00294 pfkB family carbohydrate kinase y1086 PF00999 Sodium/hydrogen exchanger family y1086 PF02254 TrkA-N domain y1087 PF07690 Major Facilitator Superfamily y1090 PF04073 Aminoacyl-tRNA editing domain y1091 PF01963 TraB family y1093 PF00403 Heavy-metal-associated domain y1094 PF13411 MerR HTH family regulatory protein y1095 PF01957 NfeD-like C-terminal, partner-binding y1096 PF16200 C-terminal region of band_7 y1096 PF01145 SPFH domain / Band 7 family y1097 PF00085 Thioredoxin y1098 PF00106 short chain dehydrogenase y1099 PF13472 GDSL-like Lipase/Acylhydrolase family y1100 PF00005 ABC transporter y1102 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain y1102 PF02222 ATP-grasp domain y1103 PF00731 AIR carboxylase y1105 PF00149 Calcineurin-like phosphoesterase y1106 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD y1107 PF09190 DALR domain y1107 PF01406 tRNA synthetases class I (C) catalytic domain y1108 PF01797 Transposase IS200 like y1110 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain y1110 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain y1115 PF01066 CDP-alcohol phosphatidyltransferase y1117 PF01553 Acyltransferase y1118 PF12147 Putative methyltransferase y1118 PF12146 Serine aminopeptidase, S33 y1119 PF00782 Dual specificity phosphatase, catalytic domain y1121 PF01695 IstB-like ATP binding protein y1122 PF02796 Helix-turn-helix domain of resolvase y1122 PF00665 Integrase core domain y1123 PF03466 LysR substrate binding domain y1123 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y1124 PF00248 Aldo/keto reductase family y1125 PF00248 Aldo/keto reductase family y1132 PF00872 Transposase, Mutator family y1133 PF08007 Cupin superfamily protein y1134 PF03797 Autotransporter beta-domain y1134 PF16168 Adhesin of bacterial autotransporter system, probable stalk y1134 PF13018 Extended Signal Peptide of Type V secretion system y1134 PF03212 Pertactin y1136 PF05638 Type VI secretion system effector, Hcp y1140 PF13693 Winged helix-turn-helix DNA-binding y1141 PF00905 Penicillin binding protein transpeptidase domain y1141 PF00912 Transglycosylase y1141 PF06832 Penicillin-Binding Protein C-terminus Family y1142 PF01797 Transposase IS200 like y1143 PF17962 Bacterial macroglobulin domain 6 y1143 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain y1143 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain y1143 PF07703 Alpha-2-macroglobulin bait region domain y1143 PF11974 Bacterial alpha-2-macroglobulin MG3 domain y1143 PF00207 Alpha-2-macroglobulin family y1143 PF01835 MG2 domain y1146 PF00171 Aldehyde dehydrogenase family y1147 PF00205 Thiamine pyrophosphate enzyme, central domain y1147 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain y1147 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain y1149 PF13407 Periplasmic binding protein domain y1150 PF00005 ABC transporter y1151 PF02653 Branched-chain amino acid transport system / permease component y1152 PF02894 Oxidoreductase family, C-terminal alpha/beta domain y1152 PF01408 Oxidoreductase family, NAD-binding Rossmann fold y1153 PF00294 pfkB family carbohydrate kinase y1154 PF01261 Xylose isomerase-like TIM barrel y1155 PF04962 KduI/IolB family y1158 PF00664 ABC transporter transmembrane region y1158 PF00005 ABC transporter y1164 PF00196 Bacterial regulatory proteins, luxR family y1165 PF00313 'Cold-shock' DNA-binding domain y1166 PF00313 'Cold-shock' DNA-binding domain y1168 PF02537 CrcB-like protein, Camphor Resistance (CrcB) y1170 PF02416 mttA/Hcf106 family y1171 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family y1171 PF04055 Radical SAM superfamily y1173 PF03099 Biotin/lipoate A/B protein ligase family y1174 PF04359 Protein of unknown function (DUF493) y1175 PF00768 D-alanyl-D-alanine carboxypeptidase y1175 PF07943 Penicillin-binding protein 5, C-terminal domain y1176 PF03330 Lytic transglycolase y1176 PF05036 Sporulation related domain y1177 PF01098 Cell cycle protein y1178 PF00905 Penicillin binding protein transpeptidase domain y1178 PF03717 Penicillin-binding Protein dimerisation domain y1179 PF02590 Predicted SPOUT methyltransferase y1181 PF01467 Cytidylyltransferase-like y1182 PF06144 DNA polymerase III, delta subunit y1182 PF14840 Processivity clamp loader gamma complex DNA pol III C-term y1183 PF04390 Lipopolysaccharide-assembly y1184 PF00133 tRNA synthetases class I (I, L, M and V) y1184 PF08264 Anticodon-binding domain of tRNA y1184 PF13603 Leucyl-tRNA synthetase, Domain 2 y1185 PF07295 Zinc-ribbon containing domain y1186 PF00005 ABC transporter y1187 PF00528 Binding-protein-dependent transport system inner membrane component y1188 PF00528 Binding-protein-dependent transport system inner membrane component y1189 PF00497 Bacterial extracellular solute-binding proteins, family 3 y1190 PF00795 Carbon-nitrogen hydrolase y1191 PF00571 CBS domain y1191 PF03471 Transporter associated domain y1193 PF02130 Uncharacterized protein family UPF0054 y1194 PF02562 PhoH-like protein y1195 PF00919 Uncharacterized protein family UPF0004 y1195 PF01938 TRAM domain y1195 PF04055 Radical SAM superfamily y1196 PF01494 FAD binding domain y1198 PF13537 Glutamine amidotransferase domain y1198 PF00733 Asparagine synthase y1199 PF13344 Haloacid dehalogenase-like hydrolase y1200 PF01047 MarR family y1200 PF00480 ROK family y1201 PF01979 Amidohydrolase family y1202 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase y1203 PF00367 phosphotransferase system, EIIB y1203 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 y1203 PF02378 Phosphotransferase system, EIIC y1204 PF01797 Transposase IS200 like y1205 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain y1205 PF00749 tRNA synthetases class I (E and Q), catalytic domain y1206 PF03573 outer membrane porin, OprD family y1208 PF01475 Ferric uptake regulator family y1209 PF00258 Flavodoxin y1211 PF01402 Ribbon-helix-helix protein, copG family y1212 PF12697 Alpha/beta hydrolase family y1213 PF00589 Phage integrase family y1213 PF13356 Arm DNA-binding domain y1214 PF01527 Transposase y1215 PF13356 Arm DNA-binding domain y1215 PF00589 Phage integrase family y1216 PF01695 IstB-like ATP binding protein y1217 PF00665 Integrase core domain y1217 PF02796 Helix-turn-helix domain of resolvase y1219 PF04069 Substrate binding domain of ABC-type glycine betaine transport system y1220 PF00528 Binding-protein-dependent transport system inner membrane component y1221 PF00005 ABC transporter y1221 PF00571 CBS domain y1222 PF00268 Ribonucleotide reductase, small chain y1223 PF00317 Ribonucleotide reductase, all-alpha domain y1223 PF08343 Ribonucleotide reductase N-terminal y1223 PF02867 Ribonucleotide reductase, barrel domain y1226 PF06392 Acid shock protein repeat y1227 PF09400 Protein of unknown function (DUF2002) y1228 PF06711 Protein of unknown function (DUF1198) y1230 PF00313 'Cold-shock' DNA-binding domain y1231 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle y1232 PF00528 Binding-protein-dependent transport system inner membrane component y1233 PF12911 N-terminal TM domain of oligopeptide transport permease C y1233 PF00528 Binding-protein-dependent transport system inner membrane component y1234 PF00005 ABC transporter y1235 PF00005 ABC transporter y1237 PF00547 Urease, gamma subunit y1238 PF00699 Urease beta subunit y1239 PF00449 Urease alpha-subunit, N-terminal domain y1239 PF01979 Amidohydrolase family y1240 PF02814 UreE urease accessory protein, N-terminal domain y1240 PF05194 UreE urease accessory protein, C-terminal domain y1241 PF01730 UreF y1242 PF02492 CobW/HypB/UreG, nucleotide-binding domain y1244 PF03253 Urea transporter y1245 PF03824 High-affinity nickel-transport protein y1246 PF06411 HdeA/HdeB family y1247 PF07885 Ion channel y1247 PF02254 TrkA-N domain y1248 PF02537 CrcB-like protein, Camphor Resistance (CrcB) y1249 PF02537 CrcB-like protein, Camphor Resistance (CrcB) y1251 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit y1252 PF02378 Phosphotransferase system, EIIC y1253 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit y1254 PF12833 Helix-turn-helix domain y1254 PF07883 Cupin domain y1255 PF04794 YdjC-like protein y1257 PF17206 SeqA protein N-terminal domain y1257 PF03925 SeqA protein C-terminal domain y1258 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II y1258 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I y1258 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III y1258 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain y1261 PF00486 Transcriptional regulatory protein, C terminal y1261 PF00072 Response regulator receiver domain y1262 PF00512 His Kinase A (phospho-acceptor) domain y1262 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y1262 PF02702 Osmosensitive K+ channel His kinase sensor domain y1262 PF13492 GAF domain y1262 PF13493 Domain of unknown function (DUF4118) y1263 PF02669 K+-transporting ATPase, c chain y1265 PF03814 Potassium-transporting ATPase A subunit y1267 PF10725 Protein of unknown function (DUF2517) y1268 PF08349 Protein of unknown function (DUF1722) y1270 PF00875 DNA photolyase y1270 PF03441 FAD binding domain of DNA photolyase y1271 PF02112 cAMP phosphodiesterases class-II y1272 PF01784 NIF3 (NGG1p interacting factor 3) y1273 PF02682 Carboxyltransferase domain, subdomain C and D y1274 PF02682 Carboxyltransferase domain, subdomain C and D y1275 PF02626 Carboxyltransferase domain, subdomain A and B y1276 PF03746 LamB/YcsF family y1280 PF01470 Pyroglutamyl peptidase y1281 PF03167 Uracil DNA glycosylase superfamily y1282 PF01228 Glycine radical y1285 PF12796 Ankyrin repeats (3 copies) y1287 PF00270 DEAD/DEAH box helicase y1287 PF00271 Helicase conserved C-terminal domain y1288 PF05175 Methyltransferase small domain y1289 PF00890 FAD binding domain y1289 PF02910 Fumarate reductase flavoprotein C-term y1290 PF08281 Sigma-70, region 4 y1290 PF04542 Sigma-70 region 2 y1291 PF03873 Anti sigma-E protein RseA, C-terminal domain y1291 PF03872 Anti sigma-E protein RseA, N-terminal domain y1292 PF03888 MucB/RseB N-terminal domain y1292 PF17188 MucB/RseB C-terminal domain y1295 PF00009 Elongation factor Tu GTP binding domain y1295 PF06421 GTP-binding protein LepA C-terminus y1295 PF03144 Elongation factor Tu domain 2 y1295 PF00679 Elongation factor G C-terminus y1296 PF10502 Signal peptidase, peptidase S26 y1297 PF00035 Double-stranded RNA binding motif y1297 PF14622 Ribonuclease-III-like y1298 PF01926 50S ribosome-binding GTPase y1298 PF07650 KH domain y1299 PF11967 Recombination protein O N terminal y1299 PF02565 Recombination protein O C terminal y1300 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ y1301 PF01648 4'-phosphopantetheinyl transferase superfamily y1302 PF01797 Transposase IS200 like y1303 PF12838 4Fe-4S dicluster domain y1304 PF01418 Helix-turn-helix domain, rpiR family y1304 PF01380 SIS domain y1305 PF01380 SIS domain y1307 PF14437 MafB19-like deaminase y1308 PF01464 Transglycosylase SLT domain y1308 PF00497 Bacterial extracellular solute-binding proteins, family 3 y1309 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain y1309 PF02769 AIR synthase related protein, C-terminal domain y1309 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal y1312 PF01797 Transposase IS200 like y1313 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y1313 PF00512 His Kinase A (phospho-acceptor) domain y1314 PF13942 YfhG lipoprotein y1315 PF00158 Sigma-54 interaction domain y1315 PF00072 Response regulator receiver domain y1316 PF02540 NAD synthase y1316 PF00795 Carbon-nitrogen hydrolase y1317 PF00543 Nitrogen regulatory protein P-II y1319 PF00665 Integrase core domain y1319 PF02796 Helix-turn-helix domain of resolvase y1320 PF01695 IstB-like ATP binding protein y1321 PF00042 Globin y1321 PF00970 Oxidoreductase FAD-binding domain y1321 PF00175 Oxidoreductase NAD-binding domain y1322 PF00464 Serine hydroxymethyltransferase y1324 PF13505 Outer membrane protein beta-barrel domain y1325 PF12832 MFS_1 like family y1328 PF00874 PRD domain y1329 PF06226 Protein of unknown function (DUF1007) y1330 PF03824 High-affinity nickel-transport protein y1331 PF00459 Inositol monophosphatase family y1332 PF00588 SpoU rRNA Methylase family y1333 PF02082 Transcriptional regulator y1334 PF00266 Aminotransferase class-V y1335 PF01592 NifU-like N terminal domain y1336 PF01521 Iron-sulphur cluster biosynthesis y1338 PF00226 DnaJ domain y1338 PF07743 HSCB C-terminal oligomerisation domain y1339 PF00012 Hsp70 protein y1340 PF00111 2Fe-2S iron-sulfur cluster binding domain y1341 PF04384 Iron-sulphur cluster assembly y1342 PF00883 Cytosol aminopeptidase family, catalytic domain y1342 PF12404 Peptidase y1343 PF07179 SseB protein N-terminal domain y1343 PF14581 SseB protein C-terminal domain y1345 PF16168 Adhesin of bacterial autotransporter system, probable stalk y1345 PF03797 Autotransporter beta-domain y1345 PF03212 Pertactin y1346 PF16168 Adhesin of bacterial autotransporter system, probable stalk y1346 PF03797 Autotransporter beta-domain y1346 PF03212 Pertactin y1349 PF00334 Nucleoside diphosphate kinase y1350 PF04055 Radical SAM superfamily y1352 PF13464 Domain of unknown function (DUF4115) y1353 PF04551 GcpE protein y1354 PF13393 Histidyl-tRNA synthetase y1354 PF03129 Anticodon binding domain y1355 PF09976 Tetratricopeptide repeat-like domain y1356 PF13360 PQQ-like domain y1357 PF01926 50S ribosome-binding GTPase y1357 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal y1359 PF07191 zinc-ribbons y1361 PF02601 Exonuclease VII, large subunit y1361 PF13742 OB-fold nucleic acid binding domain y1362 PF00571 CBS domain y1362 PF00478 IMP dehydrogenase / GMP reductase domain y1363 PF02540 NAD synthase y1363 PF00117 Glutamine amidotransferase class-I y1363 PF00958 GMP synthase C terminal domain y1364 PF01797 Transposase IS200 like y1365 PF05638 Type VI secretion system effector, Hcp y1371 PF00872 Transposase, Mutator family y1373 PF08543 Phosphomethylpyrimidine kinase y1378 PF00781 Diacylglycerol kinase catalytic domain y1380 PF07411 Domain of unknown function (DUF1508) y1381 PF00072 Response regulator receiver domain y1381 PF00486 Transcriptional regulatory protein, C terminal y1383 PF07690 Major Facilitator Superfamily y1384 PF00873 AcrB/AcrD/AcrF family y1385 PF00873 AcrB/AcrD/AcrF family y1386 PF13533 Biotin-lipoyl like y1388 PF08402 TOBE domain y1388 PF00005 ABC transporter y1389 PF00392 Bacterial regulatory proteins, gntR family y1389 PF00155 Aminotransferase class I and II y1390 PF00202 Aminotransferase class-III y1392 PF00528 Binding-protein-dependent transport system inner membrane component y1393 PF00528 Binding-protein-dependent transport system inner membrane component y1394 PF00012 Hsp70 protein y1395 PF00571 CBS domain y1395 PF03448 MgtE intracellular N domain y1395 PF01769 Divalent cation transporter y1397 PF02541 Ppx/GppA phosphatase family y1398 PF02503 Polyphosphate kinase middle domain y1398 PF13090 Polyphosphate kinase C-terminal domain 2 y1398 PF13089 Polyphosphate kinase N-terminal domain y1398 PF17941 Polyphosphate kinase C-terminal domain 1 y1399 PF00528 Binding-protein-dependent transport system inner membrane component y1400 PF00528 Binding-protein-dependent transport system inner membrane component y1401 PF00005 ABC transporter y1405 PF13302 Acetyltransferase (GNAT) domain y1406 PF00551 Formyl transferase y1407 PF00586 AIR synthase related protein, N-terminal domain y1407 PF02769 AIR synthase related protein, C-terminal domain y1409 PF01797 Transposase IS200 like y1410 PF00308 Bacterial dnaA protein y1411 PF03960 ArsC family y1412 PF07720 Tetratricopeptide repeat y1412 PF01435 Peptidase family M48 y1413 PF01594 AI-2E family transporter y1417 PF00578 AhpC/TSA family y1418 PF00701 Dihydrodipicolinate synthetase family y1419 PF06804 NlpB/DapX lipoprotein y1420 PF01797 Transposase IS200 like y1421 PF01259 SAICAR synthetase y1422 PF04228 Putative neutral zinc metallopeptidase y1423 PF04284 Protein of unknown function (DUF441) y1424 PF17176 tRNA-binding domain y1424 PF05127 Helicase y1424 PF13718 GNAT acetyltransferase 2 y1424 PF08351 Domain of unknown function (DUF1726) y1425 PF13980 Uncharacterised protein family (UPF0370) y1426 PF02557 D-alanyl-D-alanine carboxypeptidase y1427 PF01546 Peptidase family M20/M25/M40 y1427 PF07687 Peptidase dimerisation domain y1428 PF03960 ArsC family y1431 PF00528 Binding-protein-dependent transport system inner membrane component y1432 PF00005 ABC transporter y1432 PF08402 TOBE domain y1434 PF00884 Sulfatase y1436 PF13186 Iron-sulfur cluster-binding domain y1436 PF04055 Radical SAM superfamily y1437 PF04307 LexA-binding, inner membrane-associated putative hydrolase y1439 PF00873 AcrB/AcrD/AcrF family y1441 PF00196 Bacterial regulatory proteins, luxR family y1441 PF00072 Response regulator receiver domain y1442 PF00037 4Fe-4S binding domain y1442 PF12800 4Fe-4S binding domain y1442 PF13187 4Fe-4S dicluster domain y1443 PF03927 NapD protein y1446 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) y1447 PF03264 NapC/NirT cytochrome c family, N-terminal region y1448 PF00293 NUDIX domain y1449 PF03949 Malic enzyme, NAD binding domain y1449 PF00390 Malic enzyme, N-terminal domain y1449 PF01515 Phosphate acetyl/butaryl transferase y1450 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 y1451 PF01218 Coproporphyrinogen III oxidase y1452 PF00583 Acetyltransferase (GNAT) family y1454 PF03797 Autotransporter beta-domain y1454 PF16168 Adhesin of bacterial autotransporter system, probable stalk y1454 PF13018 Extended Signal Peptide of Type V secretion system y1454 PF03212 Pertactin y1455 PF04076 Bacterial OB fold (BOF) protein y1456 PF06572 Protein of unknown function (DUF1131) y1457 PF04261 Dyp-type peroxidase family y1458 PF00701 Dihydrodipicolinate synthetase family y1459 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase y1460 PF12468 Type III secretion system leucine rich repeat protein y1461 PF00480 ROK family y1462 PF04074 YhcH/YjgK/YiaL y1464 PF01418 Helix-turn-helix domain, rpiR family y1464 PF01380 SIS domain y1465 PF07690 Major Facilitator Superfamily y1467 PF00528 Binding-protein-dependent transport system inner membrane component y1468 PF00528 Binding-protein-dependent transport system inner membrane component y1469 PF00005 ABC transporter y1470 PF00291 Pyridoxal-phosphate dependent enzyme y1472 PF00486 Transcriptional regulatory protein, C terminal y1472 PF00072 Response regulator receiver domain y1473 PF00672 HAMP domain y1473 PF00512 His Kinase A (phospho-acceptor) domain y1473 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y1475 PF00155 Aminotransferase class I and II y1477 PF05195 Aminopeptidase P, N-terminal domain y1477 PF00557 Metallopeptidase family M24 y1478 PF00474 Sodium:solute symporter family y1479 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain y1479 PF07992 Pyridine nucleotide-disulphide oxidoreductase y1480 PF02687 FtsX-like permease family y1480 PF00005 ABC transporter y1480 PF12704 MacB-like periplasmic core domain y1481 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion y1482 PF00072 Response regulator receiver domain y1482 PF00486 Transcriptional regulatory protein, C terminal y1483 PF00672 HAMP domain y1483 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y1483 PF16527 Two-component sensor protein CpxA, periplasmic domain y1483 PF00512 His Kinase A (phospho-acceptor) domain y1484 PF01797 Transposase IS200 like y1485 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 y1487 PF00391 PEP-utilising enzyme, mobile domain y1487 PF02896 PEP-utilising enzyme, TIM barrel domain y1487 PF05524 PEP-utilising enzyme, N-terminal y1488 PF00381 PTS HPr component phosphorylation site y1489 PF00291 Pyridoxal-phosphate dependent enzyme y1491 PF04354 ZipA, C-terminal FtsZ-binding domain y1492 PF00533 BRCA1 C Terminus (BRCT) domain y1492 PF01653 NAD-dependent DNA ligase adenylation domain y1492 PF03120 NAD-dependent DNA ligase OB-fold domain y1492 PF03119 NAD-dependent DNA ligase C4 zinc finger domain y1492 PF12826 Helix-hairpin-helix motif y1493 PF12843 Putative quorum-sensing-regulated virulence factor y1497 PF01797 Transposase IS200 like y1498 PF00749 tRNA synthetases class I (E and Q), catalytic domain y1499 PF01773 Na+ dependent nucleoside transporter N-terminus y1499 PF07662 Na+ dependent nucleoside transporter C-terminus y1499 PF07670 Nucleoside recognition y1500 PF01566 Natural resistance-associated macrophage protein y1502 PF00248 Aldo/keto reductase family y1503 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y1503 PF03466 LysR substrate binding domain y1505 PF02685 Glucokinase y1506 PF07350 Protein of unknown function (DUF1479) y1507 PF00155 Aminotransferase class I and II y1510 PF01292 Prokaryotic cytochrome b561 y1512 PF03783 Curli production assembly/transport component CsgG y1514 PF05643 Putative bacterial lipoprotein (DUF799) y1516 PF02613 Nitrate reductase delta subunit y1517 PF04976 DMSO reductase anchor subunit (DmsC) y1518 PF13247 4Fe-4S dicluster domain y1518 PF12800 4Fe-4S binding domain y1519 PF04879 Molybdopterin oxidoreductase Fe4S4 domain y1519 PF01568 Molydopterin dinucleotide binding domain y1519 PF00384 Molybdopterin oxidoreductase y1522 PF05638 Type VI secretion system effector, Hcp y1524 PF00005 ABC transporter y1525 PF00528 Binding-protein-dependent transport system inner membrane component y1527 PF13406 Transglycosylase SLT domain y1538 PF00004 ATPase family associated with various cellular activities (AAA) y1538 PF10431 C-terminal, D2-small domain, of ClpB protein y1538 PF17871 AAA lid domain y1538 PF07724 AAA domain (Cdc48 subfamily) y1539 PF16970 Type-1 fimbrial protein, A y1541 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain y1541 PF02753 Pili assembly chaperone PapD, C-terminal domain y1542 PF00872 Transposase, Mutator family y1550 PF00665 Integrase core domain y1550 PF02796 Helix-turn-helix domain of resolvase y1551 PF01695 IstB-like ATP binding protein y1555 PF04717 Type VI secretion system, phage-baseplate injector y1563 PF08274 PhnA Zinc-Ribbon y1563 PF03831 PhnA domain y1565 PF04011 LemA family y1567 PF00005 ABC transporter y1568 PF03379 CcmB protein y1569 PF01578 Cytochrome C assembly protein y1570 PF04995 Heme exporter protein D (CcmD) y1571 PF03100 CcmE y1572 PF01578 Cytochrome C assembly protein y1572 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal y1573 PF08534 Redoxin y1574 PF03918 Cytochrome C biogenesis protein y1575 PF03918 Cytochrome C biogenesis protein y1576 PF04333 MlaA lipoprotein y1577 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) y1578 PF04175 Protein of unknown function (DUF406) y1579 PF00108 Thiolase, N-terminal domain y1579 PF02803 Thiolase, C-terminal domain y1580 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain y1580 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain y1580 PF00378 Enoyl-CoA hydratase/isomerase y1582 PF00300 Histidine phosphatase superfamily (branch 1) y1583 PF01713 Smr domain y1584 PF05175 Methyltransferase small domain y1585 PF01264 Chorismate synthase y1586 PF03411 Penicillin-insensitive murein endopeptidase y1587 PF01925 Sulfite exporter TauE/SafE y1588 PF04315 Elongation factor P hydroxylase y1589 PF08891 YfcL protein y1590 PF01266 FAD dependent oxidoreductase y1590 PF05430 S-adenosyl-L-methionine-dependent methyltransferase y1591 PF02801 Beta-ketoacyl synthase, C-terminal domain y1591 PF00109 Beta-ketoacyl synthase, N-terminal domain y1592 PF01177 Asp/Glu/Hydantoin racemase y1593 PF00419 Fimbrial protein y1595 PF00892 EamA-like transporter family y1597 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain y1597 PF11890 Domain of unknown function (DUF3410) y1597 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain y1598 PF01118 Semialdehyde dehydrogenase, NAD binding domain y1598 PF02774 Semialdehyde dehydrogenase, dimerisation domain y1599 PF01416 tRNA pseudouridine synthase y1600 PF09335 SNARE associated Golgi protein y1601 PF01039 Carboxyl transferase domain y1601 PF17848 Acetyl-coA carboxylase zinc finger domain y1602 PF02875 Mur ligase family, glutamate ligase domain y1602 PF08245 Mur ligase middle domain y1603 PF05036 Sporulation related domain y1604 PF02674 Colicin V production protein y1605 PF00156 Phosphoribosyl transferase domain y1606 PF02441 Flavoprotein y1607 PF00497 Bacterial extracellular solute-binding proteins, family 3 y1608 PF00528 Binding-protein-dependent transport system inner membrane component y1609 PF00528 Binding-protein-dependent transport system inner membrane component y1610 PF00005 ABC transporter y1611 PF01370 NAD dependent epimerase/dehydratase family y1611 PF08338 Domain of unknown function (DUF1731) y1613 PF12850 Calcineurin-like phosphoesterase superfamily domain y1614 PF00293 NUDIX domain y1615 PF03611 PTS system sugar-specific permease component y1616 PF00872 Transposase, Mutator family y1618 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 y1619 PF00356 Bacterial regulatory proteins, lacI family y1619 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family y1620 PF01515 Phosphate acetyl/butaryl transferase y1620 PF07085 DRTGG domain y1622 PF00871 Acetokinase family y1623 PF04217 Protein of unknown function, DUF412 y1624 PF03887 YfbU domain y1625 PF13419 Haloacid dehalogenase-like hydrolase y1626 PF02080 TrkA-C domain y1626 PF03600 Citrate transporter y1628 PF00155 Aminotransferase class I and II y1629 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y1629 PF03466 LysR substrate binding domain y1630 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 y1631 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit y1632 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit y1632 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit y1634 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region y1634 PF10531 SLBB domain y1634 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit y1635 PF01568 Molydopterin dinucleotide binding domain y1635 PF04879 Molybdopterin oxidoreductase Fe4S4 domain y1635 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region y1635 PF00384 Molybdopterin oxidoreductase y1636 PF00146 NADH dehydrogenase y1637 PF12838 4Fe-4S dicluster domain y1638 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 y1639 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L y1640 PF00361 Proton-conducting membrane transporter y1640 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus y1641 PF00361 Proton-conducting membrane transporter y1642 PF00361 Proton-conducting membrane transporter y1645 PF00106 short chain dehydrogenase y1646 PF01202 Shikimate kinase y1650 PF00356 Bacterial regulatory proteins, lacI family y1651 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain y1651 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain y1652 PF07690 Major Facilitator Superfamily y1653 PF03928 Haem-degrading y1654 PF00920 Dehydratase family y1657 PF05957 Bacterial protein of unknown function (DUF883) y1659 PF00425 chorismate binding enzyme y1660 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain y1660 PF16582 Middle domain of thiamine pyrophosphate y1660 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain y1661 PF12697 Alpha/beta hydrolase family y1662 PF00378 Enoyl-CoA hydratase/isomerase y1663 PF13378 Enolase C-terminal domain-like y1664 PF00501 AMP-binding enzyme y1664 PF13193 AMP-binding enzyme C-terminal domain y1665 PF02885 Glycosyl transferase family, helical bundle domain y1667 PF07338 Protein of unknown function (DUF1471) y1668 PF05971 RNA methyltransferase y1670 PF01695 IstB-like ATP binding protein y1671 PF00665 Integrase core domain y1671 PF02796 Helix-turn-helix domain of resolvase y1672 PF08447 PAS fold y1672 PF13426 PAS domain y1672 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain y1673 PF00005 ABC transporter y1674 PF00528 Binding-protein-dependent transport system inner membrane component y1675 PF00497 Bacterial extracellular solute-binding proteins, family 3 y1677 PF00210 Ferritin-like domain y1678 PF13649 Methyltransferase domain y1680 PF00892 EamA-like transporter family y1682 PF13505 Outer membrane protein beta-barrel domain y1686 PF00107 Zinc-binding dehydrogenase y1686 PF08240 Alcohol dehydrogenase GroES-like domain y1687 PF13407 Periplasmic binding protein domain y1688 PF00005 ABC transporter y1689 PF02653 Branched-chain amino acid transport system / permease component y1690 PF00356 Bacterial regulatory proteins, lacI family y1691 PF03466 LysR substrate binding domain y1691 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y1692 PF00180 Isocitrate/isopropylmalate dehydrogenase y1693 PF02028 BCCT, betaine/carnitine/choline family transporter y1695 PF00175 Oxidoreductase NAD-binding domain y1695 PF00970 Oxidoreductase FAD-binding domain y1695 PF00111 2Fe-2S iron-sulfur cluster binding domain y1696 PF08479 POTRA domain, ShlB-type y1696 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB y1696 PF17287 POTRA domain y1697 PF04829 Pre-toxin domain with VENN motif y1697 PF13332 Hemagglutinin repeat y1697 PF05860 haemagglutination activity domain y1697 PF13018 Extended Signal Peptide of Type V secretion system y1701 PF13018 Extended Signal Peptide of Type V secretion system y1701 PF13332 Hemagglutinin repeat y1701 PF05860 haemagglutination activity domain y1701 PF04829 Pre-toxin domain with VENN motif y1704 PF13332 Hemagglutinin repeat y1704 PF05860 haemagglutination activity domain y1704 PF15526 Novel toxin 21 y1704 PF04829 Pre-toxin domain with VENN motif y1704 PF05594 Haemagluttinin repeat y1709 PF00005 ABC transporter y1709 PF17912 MalK OB fold domain y1710 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II y1710 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III y1710 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain y1710 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I y1711 PF00356 Bacterial regulatory proteins, lacI family y1713 PF00528 Binding-protein-dependent transport system inner membrane component y1714 PF00528 Binding-protein-dependent transport system inner membrane component y1715 PF04041 beta-1,4-mannooligosaccharide phosphorylase y1720 PF00924 Mechanosensitive ion channel y1722 PF01867 CRISPR associated protein Cas1 y1724 PF09611 CRISPR-associated protein (Cas_Csy1) y1725 PF09614 CRISPR-associated protein (Cas_Csy2) y1726 PF09615 CRISPR-associated protein (Cas_Csy3) y1727 PF09618 CRISPR-associated protein (Cas_Csy4) y1728 PF00248 Aldo/keto reductase family y1730 PF00083 Sugar (and other) transporter y1731 PF03466 LysR substrate binding domain y1731 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y1732 PF00196 Bacterial regulatory proteins, luxR family y1732 PF03472 Autoinducer binding domain y1733 PF00765 Autoinducer synthase y1739 PF01594 AI-2E family transporter y1741 PF00196 Bacterial regulatory proteins, luxR family y1742 PF01266 FAD dependent oxidoreductase y1743 PF00872 Transposase, Mutator family y1744 PF03992 Antibiotic biosynthesis monooxygenase y1746 PF01979 Amidohydrolase family y1747 PF06183 DinI-like family y1748 PF00872 Transposase, Mutator family y1749 PF00575 S1 RNA binding domain y1749 PF12111 Polyribonucleotide phosphorylase C terminal y1749 PF10150 Ribonuclease E/G family y1750 PF00849 RNA pseudouridylate synthase y1750 PF01479 S4 domain y1751 PF02545 Maf-like protein y1752 PF02620 Large ribosomal RNA subunit accumulation protein YceD y1753 PF01783 Ribosomal L32p protein family y1755 PF02504 Fatty acid synthesis protein y1756 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal y1756 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III y1757 PF00698 Acyl transferase domain y1759 PF00550 Phosphopantetheine attachment site y1760 PF00109 Beta-ketoacyl synthase, N-terminal domain y1760 PF02801 Beta-ketoacyl synthase, C-terminal domain y1761 PF01797 Transposase IS200 like y1762 PF01063 Amino-transferase class IV y1763 PF02618 YceG-like family y1764 PF02223 Thymidylate kinase y1765 PF09115 DNA polymerase III, delta subunit, C terminal y1766 PF01026 TatD related DNase y1767 PF02378 Phosphotransferase system, EIIC y1767 PF00367 phosphotransferase system, EIIB y1768 PF01797 Transposase IS200 like y1769 PF08501 Shikimate dehydrogenase substrate binding domain y1770 PF01230 HIT domain y1771 PF07233 Protein of unknown function (DUF1425) y1772 PF13036 Peptidoglycan-synthase activator LpoB y1772 PF08139 Prokaryotic membrane lipoprotein lipid attachment site y1773 PF01636 Phosphotransferase enzyme family y1775 PF00933 Glycosyl hydrolase family 3 N terminal domain y1776 PF05728 Uncharacterised protein family (UPF0227) y1777 PF07992 Pyridine nucleotide-disulphide oxidoreductase y1781 PF00872 Transposase, Mutator family y1782 PF05433 Glycine zipper 2TM domain y1784 PF17757 UvrB interaction domain y1784 PF02559 CarD-like/TRCF domain y1784 PF00270 DEAD/DEAH box helicase y1784 PF03461 TRCF domain y1784 PF00271 Helicase conserved C-terminal domain y1785 PF02687 FtsX-like permease family y1785 PF12704 MacB-like periplasmic core domain y1786 PF00005 ABC transporter y1787 PF02687 FtsX-like permease family y1787 PF12704 MacB-like periplasmic core domain y1788 PF00480 ROK family y1789 PF00480 ROK family y1790 PF02146 Sir2 family y1791 PF01546 Peptidase family M20/M25/M40 y1791 PF07687 Peptidase dimerisation domain y1792 PF08007 Cupin superfamily protein y1793 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y1793 PF08918 PhoQ Sensor y1794 PF00072 Response regulator receiver domain y1794 PF00486 Transcriptional regulatory protein, C terminal y1797 PF08328 Adenylosuccinate lyase C-terminal y1797 PF00206 Lyase y1798 PF04356 Protein of unknown function (DUF489) y1800 PF00293 NUDIX domain y1801 PF00849 RNA pseudouridylate synthase y1802 PF00180 Isocitrate/isopropylmalate dehydrogenase y1803 PF00356 Bacterial regulatory proteins, lacI family y1803 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family y1805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain y1805 PF08447 PAS fold y1806 PF05368 NmrA-like family y1807 PF01638 HxlR-like helix-turn-helix y1810 PF00328 Histidine phosphatase superfamily (branch 2) y1811 PF14001 YdfZ protein y1813 PF13404 AsnC-type helix-turn-helix domain y1813 PF01037 Lrp/AsnC ligand binding domain y1815 PF10777 Inner membrane protein YlaC y1816 PF08240 Alcohol dehydrogenase GroES-like domain y1816 PF00107 Zinc-binding dehydrogenase y1816 PF00698 Acyl transferase domain y1816 PF14765 Polyketide synthase dehydratase y1816 PF00109 Beta-ketoacyl synthase, N-terminal domain y1816 PF02801 Beta-ketoacyl synthase, C-terminal domain y1816 PF08659 KR domain y1816 PF00550 Phosphopantetheine attachment site y1816 PF16197 Ketoacyl-synthetase C-terminal extension y1817 PF02836 Glycosyl hydrolases family 2, TIM barrel domain y1817 PF02929 Beta galactosidase small chain y1817 PF16353 Domain of unknown function(DUF4981) y1817 PF02837 Glycosyl hydrolases family 2, sugar binding domain y1817 PF00703 Glycosyl hydrolases family 2 y1818 PF10781 Dextransucrase DSRB y1820 PF02308 MgtC family y1821 PF00690 Cation transporter/ATPase, N-terminus y1821 PF00689 Cation transporting ATPase, C-terminus y1822 PF05280 Flagellar transcriptional activator (FlhC) y1823 PF01618 MotA/TolQ/ExbB proton channel family y1826 PF13677 Membrane MotB of proton-channel complex MotA/MotB y1826 PF00691 OmpA family y1827 PF01627 Hpt domain y1827 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y1827 PF02895 Signal transducing histidine kinase, homodimeric domain y1827 PF09078 CheY binding y1827 PF01584 CheW-like domain y1828 PF01584 CheW-like domain y1829 PF07690 Major Facilitator Superfamily y1830 PF01042 Endoribonuclease L-PSP y1832 PF08348 YheO-like PAS domain y1832 PF13309 HTH domain y1834 PF12951 Passenger-associated-transport-repeat y1837 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain y1837 PF00672 HAMP domain y1837 PF02203 Tar ligand binding domain homologue y1838 PF02203 Tar ligand binding domain homologue y1838 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain y1838 PF00672 HAMP domain y1839 PF01739 CheR methyltransferase, SAM binding domain y1839 PF03705 CheR methyltransferase, all-alpha domain y1841 PF01339 CheB methylesterase y1841 PF00072 Response regulator receiver domain y1842 PF00072 Response regulator receiver domain y1843 PF04344 Chemotaxis phosphatase, CheZ y1845 PF01510 N-acetylmuramoyl-L-alanine amidase y1846 PF13018 Extended Signal Peptide of Type V secretion system y1846 PF03895 YadA-like membrane anchor domain y1846 PF05658 Head domain of trimeric autotransporter adhesin y1846 PF05662 Coiled stalk of trimeric autotransporter adhesin y1847 PF13018 Extended Signal Peptide of Type V secretion system y1847 PF03895 YadA-like membrane anchor domain y1847 PF05658 Head domain of trimeric autotransporter adhesin y1847 PF05662 Coiled stalk of trimeric autotransporter adhesin y1849 PF00842 Alanine racemase, C-terminal domain y1849 PF01168 Alanine racemase, N-terminal domain y1853 PF01695 IstB-like ATP binding protein y1854 PF02796 Helix-turn-helix domain of resolvase y1854 PF00665 Integrase core domain y1856 PF07351 Protein of unknown function (DUF1480) y1859 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain y1859 PF02753 Pili assembly chaperone PapD, C-terminal domain y1863 PF02470 MlaD protein y1864 PF04403 Paraquat-inducible protein A y1865 PF13185 GAF domain y1866 PF04352 ProQ/FINO family y1866 PF17516 ProQ C-terminal domain y1867 PF11818 C-terminal domain of tail specific protease (DUF3340) y1867 PF00595 PDZ domain y1867 PF17804 Tail specific protease N-terminal domain y1867 PF03572 Peptidase family S41 y1868 PF01435 Peptidase family M48 y1869 PF00419 Fimbrial protein y1870 PF02753 Pili assembly chaperone PapD, C-terminal domain y1870 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain y1871 PF13953 PapC C-terminal domain y1871 PF00577 Outer membrane usher protein y1871 PF13954 PapC N-terminal domain y1873 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain y1873 PF02753 Pili assembly chaperone PapD, C-terminal domain y1874 PF07690 Major Facilitator Superfamily y1875 PF14583 Oligogalacturonate lyase y1876 PF01614 Bacterial transcriptional regulator y1876 PF09339 IclR helix-turn-helix domain y1877 PF01510 N-acetylmuramoyl-L-alanine amidase y1879 PF04307 LexA-binding, inner membrane-associated putative hydrolase y1880 PF06178 Oligogalacturonate-specific porin protein (KdgM) y1881 PF01547 Bacterial extracellular solute-binding protein y1882 PF17912 MalK OB fold domain y1882 PF00005 ABC transporter y1882 PF03459 TOBE domain y1883 PF00528 Binding-protein-dependent transport system inner membrane component y1884 PF00528 Binding-protein-dependent transport system inner membrane component y1885 PF06917 Periplasmic pectate lyase y1887 PF04962 KduI/IolB family y1888 PF07883 Cupin domain y1889 PF00872 Transposase, Mutator family y1890 PF13419 Haloacid dehalogenase-like hydrolase y1891 PF14002 YniB-like protein y1894 PF00950 ABC 3 transport family y1895 PF00950 ABC 3 transport family y1896 PF00005 ABC transporter y1897 PF01297 Zinc-uptake complex component A periplasmic y1898 PF01464 Transglycosylase SLT domain y1899 PF01914 MarC family integral membrane protein y1902 PF13619 KTSC domain y1903 PF03129 Anticodon binding domain y1903 PF02824 TGS domain y1903 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) y1903 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain y1904 PF05198 Translation initiation factor IF-3, N-terminal domain y1904 PF00707 Translation initiation factor IF-3, C-terminal domain y1905 PF00453 Ribosomal protein L20 y1908 PF01409 tRNA synthetases class II core domain (F) y1908 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain y1909 PF01588 Putative tRNA binding domain y1909 PF03484 tRNA synthetase B5 domain y1909 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain y1909 PF03147 Ferredoxin-fold anticodon binding domain y1909 PF03483 B3/4 domain y1910 PF00216 Bacterial DNA-binding protein y1914 PF01032 FecCD transport family y1915 PF00255 Glutathione peroxidase y1916 PF00005 ABC transporter y1917 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family y1918 PF00535 Glycosyl transferase family 2 y1919 PF00551 Formyl transferase y1919 PF02911 Formyl transferase, C-terminal domain y1919 PF01370 NAD dependent epimerase/dehydratase family y1920 PF01522 Polysaccharide deacetylase y1921 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase y1922 PF00892 EamA-like transporter family y1925 PF00877 NlpC/P60 family y1926 PF03099 Biotin/lipoate A/B protein ligase family y1926 PF10437 Bacterial lipoate protein ligase C-terminus y1928 PF00793 DAHP synthetase I family y1929 PF03618 Kinase/pyrophosphorylase y1930 PF02896 PEP-utilising enzyme, TIM barrel domain y1930 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain y1930 PF00391 PEP-utilising enzyme, mobile domain y1931 PF01594 AI-2E family transporter y1932 PF02913 FAD linked oxidases, C-terminal domain y1932 PF01565 FAD binding domain y1932 PF13183 4Fe-4S dicluster domain y1933 PF03061 Thioesterase superfamily y1934 PF01521 Iron-sulphur cluster biosynthesis y1935 PF01458 Uncharacterized protein family (UPF0051) y1936 PF00005 ABC transporter y1937 PF01458 Uncharacterized protein family (UPF0051) y1938 PF00266 Aminotransferase class-V y1939 PF02657 Fe-S metabolism associated domain y1940 PF03734 L,D-transpeptidase catalytic domain y1940 PF01476 LysM domain y1940 PF17969 L,D-transpeptidase C-terminal domain y1941 PF01695 IstB-like ATP binding protein y1942 PF02796 Helix-turn-helix domain of resolvase y1942 PF00665 Integrase core domain y1943 PF01797 Transposase IS200 like y1944 PF02887 Pyruvate kinase, alpha/beta domain y1944 PF00224 Pyruvate kinase, barrel domain y1945 PF01554 MatE y1946 PF00677 Lumazine binding domain y1948 PF07690 Major Facilitator Superfamily y1949 PF03466 LysR substrate binding domain y1949 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y1950 PF00356 Bacterial regulatory proteins, lacI family y1951 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain y1951 PF02777 Iron/manganese superoxide dismutases, C-terminal domain y1952 PF00877 NlpC/P60 family y1953 PF00462 Glutaredoxin y1955 PF00929 Exonuclease y1957 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily y1958 PF00724 NADH:flavin oxidoreductase / NADH oxidase family y1959 PF00440 Bacterial regulatory proteins, tetR family y1959 PF16925 Tetracyclin repressor-like, C-terminal domain y1960 PF00884 Sulfatase y1960 PF08019 Phosphoethanolamine transferase EptA/EptB y1961 PF01047 MarR family y1962 PF05433 Glycine zipper 2TM domain y1963 PF03702 Anhydro-N-acetylmuramic acid kinase y1964 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme y1965 PF01243 Pyridoxamine 5'-phosphate oxidase y1965 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region y1966 PF01479 S4 domain y1966 PF00579 tRNA synthetases class I (W and Y) y1967 PF08543 Phosphomethylpyrimidine kinase y1968 PF00043 Glutathione S-transferase, C-terminal domain y1968 PF02798 Glutathione S-transferase, N-terminal domain y1969 PF11656 YjbD family (DUF3811) y1970 PF04893 Yip1 domain y1971 PF00854 POT family y1973 PF00005 ABC transporter y1974 PF00005 ABC transporter y1974 PF08352 Oligopeptide/dipeptide transporter, C-terminal region y1975 PF12911 N-terminal TM domain of oligopeptide transport permease C y1975 PF00528 Binding-protein-dependent transport system inner membrane component y1976 PF00528 Binding-protein-dependent transport system inner membrane component y1977 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle y1978 PF01797 Transposase IS200 like y1979 PF02954 Bacterial regulatory protein, Fis family y1979 PF00158 Sigma-54 interaction domain y1980 PF04012 PspA/IM30 family y1981 PF06667 Phage shock protein B y1982 PF04024 PspC domain y1984 PF04317 YcjX-like family, DUF463 y1985 PF05128 Domain of unknown function (DUF697) y1988 PF00158 Sigma-54 interaction domain y1988 PF18024 Helix-turn-helix domain y1989 PF01797 Transposase IS200 like y1990 PF08534 Redoxin y1991 PF13378 Enolase C-terminal domain-like y1991 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain y1992 PF00246 Zinc carboxypeptidase y1993 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle y1994 PF01544 CorA-like Mg2+ transporter protein y1996 PF13472 GDSL-like Lipase/Acylhydrolase family y1996 PF07859 alpha/beta hydrolase fold y1998 PF01171 PP-loop family y1999 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain y1999 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg y1999 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase y1999 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II y1999 PF10371 Domain of unknown function y2000 PF00893 Small Multidrug Resistance protein y2001 PF02308 MgtC family y2002 PF03891 Domain of unknown function (DUF333) y2003 PF03724 META domain y2004 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain y2004 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain y2005 PF11739 Dicarboxylate transport y2006 PF13617 YnbE-like lipoprotein y2007 PF07027 Protein of unknown function (DUF1318) y2008 PF01232 Mannitol dehydrogenase Rossmann domain y2008 PF08125 Mannitol dehydrogenase C-terminal domain y2009 PF00325 Bacterial regulatory proteins, crp family y2009 PF04198 Putative sugar-binding domain y2010 PF02525 Flavodoxin-like fold y2011 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold y2011 PF00270 DEAD/DEAH box helicase y2011 PF11898 Domain of unknown function (DUF3418) y2011 PF04408 Helicase associated domain (HA2) y2011 PF00271 Helicase conserved C-terminal domain y2013 PF00089 Trypsin y2016 PF01292 Prokaryotic cytochrome b561 y2020 PF14431 YwqJ-like deaminase y2020 PF18807 Tripartite Tc toxins repeat y2021 PF01695 IstB-like ATP binding protein y2022 PF02796 Helix-turn-helix domain of resolvase y2022 PF00665 Integrase core domain y2023 PF00171 Aldehyde dehydrogenase family y2023 PF00465 Iron-containing alcohol dehydrogenase y2025 PF01914 MarC family integral membrane protein y2026 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle y2027 PF00528 Binding-protein-dependent transport system inner membrane component y2028 PF00528 Binding-protein-dependent transport system inner membrane component y2028 PF12911 N-terminal TM domain of oligopeptide transport permease C y2029 PF08352 Oligopeptide/dipeptide transporter, C-terminal region y2029 PF00005 ABC transporter y2030 PF08352 Oligopeptide/dipeptide transporter, C-terminal region y2030 PF00005 ABC transporter y2032 PF04269 Protein of unknown function, DUF440 y2033 PF13091 PLD-like domain y2033 PF13396 Phospholipase_D-nuclease N-terminal y2034 PF13505 Outer membrane protein beta-barrel domain y2036 PF03795 YCII-related domain y2037 PF03544 Gram-negative bacterial TonB protein C-terminal y2038 PF00872 Transposase, Mutator family y2039 PF03061 Thioesterase superfamily y2040 PF04279 Intracellular septation protein A y2044 PF03922 OmpW family y2047 PF00290 Tryptophan synthase alpha chain y2048 PF00291 Pyridoxal-phosphate dependent enzyme y2049 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase y2049 PF00218 Indole-3-glycerol phosphate synthase y2051 PF04715 Anthranilate synthase component I, N terminal region y2051 PF00425 chorismate binding enzyme y2052 PF02811 PHP domain y2053 PF01300 Telomere recombination y2054 PF00849 RNA pseudouridylate synthase y2054 PF01479 S4 domain y2055 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP y2056 PF00106 short chain dehydrogenase y2057 PF01343 Peptidase family S49 y2057 PF08496 Peptidase family S49 N-terminal y2058 PF10692 Protein of unknown function (DUF2498) y2060 PF01396 Topoisomerase DNA binding C4 zinc finger y2060 PF01751 Toprim domain y2060 PF01131 DNA topoisomerase y2060 PF08272 Topoisomerase I zinc-ribbon-like y2061 PF03466 LysR substrate binding domain y2061 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y2063 PF00694 Aconitase C-terminal domain y2063 PF00330 Aconitase family (aconitate hydratase) y2064 PF00925 GTP cyclohydrolase II y2065 PF01569 PAP2 superfamily y2066 PF06305 Lipopolysaccharide assembly protein A domain y2067 PF18073 Rubredoxin metal binding domain y2069 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family y2070 PF01253 Translation initiation factor SUI1 y2071 PF05433 Glycine zipper 2TM domain y2072 PF00596 Class II Aldolase and Adducin N-terminal domain y2074 PF00923 Transaldolase/Fructose-6-phosphate aldolase y2075 PF04328 Selenoprotein, putative y2076 PF13722 5TM C-terminal transporter carbon starvation CstA y2076 PF02554 Carbon starvation protein CstA y2077 PF00773 RNB domain y2077 PF00575 S1 RNA binding domain y2077 PF17876 Cold shock domain y2077 PF08206 Ribonuclease B OB domain y2078 PF07690 Major Facilitator Superfamily y2079 PF01370 NAD dependent epimerase/dehydratase family y2080 PF00730 HhH-GPD superfamily base excision DNA repair protein y2080 PF00633 Helix-hairpin-helix motif y2080 PF10576 Iron-sulfur binding domain of endonuclease III y2081 PF02508 Rnf-Nqr subunit, membrane protein y2082 PF04205 FMN-binding domain y2083 PF03116 NQR2, RnfD, RnfE family y2084 PF12833 Helix-turn-helix domain y2084 PF06445 GyrI-like small molecule binding domain y2085 PF13375 RnfC Barrel sandwich hybrid domain y2085 PF10531 SLBB domain y2085 PF13237 4Fe-4S dicluster domain y2085 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit y2086 PF04060 Putative Fe-S cluster y2087 PF02508 Rnf-Nqr subunit, membrane protein y2088 PF10754 Protein of unknown function (DUF2569) y2090 PF00664 ABC transporter transmembrane region y2090 PF03412 Peptidase C39 family y2090 PF00005 ABC transporter y2091 PF00005 ABC transporter y2091 PF00664 ABC transporter transmembrane region y2093 PF00664 ABC transporter transmembrane region y2093 PF03412 Peptidase C39 family y2093 PF00005 ABC transporter y2094 PF11762 L-arabinose isomerase C-terminal domain y2094 PF02610 L-arabinose isomerase y2095 PF02782 FGGY family of carbohydrate kinases, C-terminal domain y2096 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family y2097 PF00005 ABC transporter y2098 PF02653 Branched-chain amino acid transport system / permease component y2100 PF12833 Helix-turn-helix domain y2100 PF02311 AraC-like ligand binding domain y2101 PF01408 Oxidoreductase family, NAD-binding Rossmann fold y2101 PF02894 Oxidoreductase family, C-terminal alpha/beta domain y2102 PF13593 SBF-like CPA transporter family (DUF4137) y2104 PF06097 Bacterial protein of unknown function (DUF945) y2105 PF01238 Phosphomannose isomerase type I y2106 PF10415 Fumarase C C-terminus y2106 PF00206 Lyase y2107 PF05472 DNA replication terminus site-binding protein (Ter protein) y2108 PF07690 Major Facilitator Superfamily y2109 PF03466 LysR substrate binding domain y2109 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y2110 PF00480 ROK family y2112 PF00654 Voltage gated chloride channel y2113 PF00356 Bacterial regulatory proteins, lacI family y2116 PF09084 NMT1/THI5 like y2117 PF00528 Binding-protein-dependent transport system inner membrane component y2118 PF00005 ABC transporter y2119 PF01048 Phosphorylase superfamily y2119 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus y2126 PF00205 Thiamine pyrophosphate enzyme, central domain y2126 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain y2126 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain y2127 PF01842 ACT domain y2128 PF13419 Haloacid dehalogenase-like hydrolase y2130 PF00245 Alkaline phosphatase y2131 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain y2131 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain y2132 PF00027 Cyclic nucleotide-binding domain y2132 PF13545 Crp-like helix-turn-helix domain y2133 PF00582 Universal stress protein family y2134 PF02233 NAD(P) transhydrogenase beta subunit y2135 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch y2135 PF01262 Alanine dehydrogenase/PNT, C-terminal domain y2135 PF05222 Alanine dehydrogenase/PNT, N-terminal domain y2136 PF07338 Protein of unknown function (DUF1471) y2137 PF13520 Amino acid permease y2139 PF00072 Response regulator receiver domain y2139 PF00486 Transcriptional regulatory protein, C terminal y2140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y2140 PF00512 His Kinase A (phospho-acceptor) domain y2140 PF00672 HAMP domain y2141 PF02074 Carboxypeptidase Taq (M32) metallopeptidase y2142 PF01797 Transposase IS200 like y2143 PF00665 Integrase core domain y2143 PF02796 Helix-turn-helix domain of resolvase y2144 PF01695 IstB-like ATP binding protein y2145 PF00265 Thymidine kinase y2146 PF00816 H-NS histone family y2147 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain y2147 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain y2147 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain y2148 PF00072 Response regulator receiver domain y2149 PF02810 SEC-C motif y2150 PF01842 ACT domain y2150 PF00551 Formyl transferase y2151 PF00872 Transposase, Mutator family y2152 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y2152 PF03466 LysR substrate binding domain y2153 PF03372 Endonuclease/Exonuclease/phosphatase family y2154 PF00293 NUDIX domain y2155 PF07383 Protein of unknown function (DUF1496) y2156 PF01751 Toprim domain y2156 PF01131 DNA topoisomerase y2157 PF02769 AIR synthase related protein, C-terminal domain y2157 PF00586 AIR synthase related protein, N-terminal domain y2159 PF00881 Nitroreductase family y2160 PF01343 Peptidase family S49 y2161 PF00710 Asparaginase, N-terminal y2161 PF17763 Glutaminase/Asparaginase C-terminal domain y2162 PF00857 Isochorismatase family y2163 PF07023 Protein of unknown function (DUF1315) y2164 PF01641 SelR domain y2165 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain y2165 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain y2166 PF01263 Aldose 1-epimerase y2167 PF06629 MltA-interacting protein MipA y2168 PF08298 PrkA AAA domain y2168 PF06798 PrkA serine protein kinase C-terminal domain y2169 PF04285 Protein of unknown function (DUF444) y2171 PF03466 LysR substrate binding domain y2171 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y2172 PF02678 Pirin y2172 PF05726 Pirin C-terminal cupin domain y2173 PF07690 Major Facilitator Superfamily y2174 PF01266 FAD dependent oxidoreductase y2175 PF04293 SpoVR like protein y2177 PF00392 Bacterial regulatory proteins, gntR family y2177 PF07840 FadR C-terminal domain y2179 PF02600 Disulfide bond formation protein DsbB y2182 PF00266 Aminotransferase class-V y2184 PF00872 Transposase, Mutator family y2185 PF02413 Caudovirales tail fibre assembly protein, lambda gpK y2210 PF00872 Transposase, Mutator family y2220 PF06530 Phage antitermination protein Q y2223 PF05772 NinB protein y2225 PF01695 IstB-like ATP binding protein y2226 PF02796 Helix-turn-helix domain of resolvase y2226 PF00665 Integrase core domain y2227 PF12167 Arm DNA-binding domain y2227 PF00589 Phage integrase family y2228 PF03692 Putative zinc- or iron-chelating domain y2229 PF01557 Fumarylacetoacetate (FAA) hydrolase family y2230 PF13406 Transglycosylase SLT domain y2231 PF05166 YcgL domain y2232 PF05209 Septum formation inhibitor MinC, N-terminal domain y2232 PF03775 Septum formation inhibitor MinC, C-terminal domain y2233 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain y2234 PF03776 Septum formation topological specificity factor MinE y2235 PF01612 3'-5' exonuclease y2235 PF00570 HRDC domain y2236 PF13193 AMP-binding enzyme C-terminal domain y2236 PF00501 AMP-binding enzyme y2237 PF03843 Outer membrane lipoprotein Slp family y2238 PF00814 Glycoprotease family y2239 PF13307 Helicase C-terminal domain y2239 PF04851 Type III restriction enzyme, res subunit y2240 PF01042 Endoribonuclease L-PSP y2241 PF00893 Small Multidrug Resistance protein y2242 PF00893 Small Multidrug Resistance protein y2243 PF01081 KDPG and KHG aldolase y2244 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain y2244 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain y2245 PF01380 SIS domain y2245 PF01418 Helix-turn-helix domain, rpiR family y2246 PF00224 Pyruvate kinase, barrel domain y2246 PF02887 Pyruvate kinase, alpha/beta domain y2247 PF03279 Bacterial lipid A biosynthesis acyltransferase y2248 PF01476 LysM domain y2248 PF08525 Opacity-associated protein A N-terminal motif y2248 PF01551 Peptidase family M23 y2249 PF01297 Zinc-uptake complex component A periplasmic y2250 PF00005 ABC transporter y2251 PF00950 ABC 3 transport family y2252 PF17864 RuvB AAA lid domain y2252 PF05491 RuvB C-terminal winged helix domain y2252 PF05496 Holliday junction DNA helicase RuvB P-loop domain y2253 PF01330 RuvA N terminal domain y2253 PF07499 RuvA, C-terminal domain y2254 PF02075 Crossover junction endodeoxyribonuclease RuvC y2255 PF01709 Transcriptional regulator y2256 PF00293 NUDIX domain y2258 PF01336 OB-fold nucleic acid binding domain y2258 PF00152 tRNA synthetases class II (D, K and N) y2258 PF02938 GAD domain y2259 PF01904 Protein of unknown function DUF72 y2260 PF01124 MAPEG family y2261 PF13649 Methyltransferase domain y2262 PF08003 Protein of unknown function (DUF1698) y2263 PF03932 CutC family y2264 PF06185 YecM protein y2266 PF00750 tRNA synthetases class I (R) y2266 PF03485 Arginyl tRNA synthetase N terminal domain y2266 PF05746 DALR anticodon binding domain y2267 PF05860 haemagglutination activity domain y2267 PF13332 Hemagglutinin repeat y2268 PF08479 POTRA domain, ShlB-type y2268 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB y2268 PF17287 POTRA domain y2269 PF03023 Lipid II flippase MurJ y2270 PF04337 Protein of unknown function, DUF480 y2271 PF13302 Acetyltransferase (GNAT) domain y2272 PF07690 Major Facilitator Superfamily y2273 PF07273 Protein of unknown function (DUF1439) y2274 PF02613 Nitrate reductase delta subunit y2275 PF02811 PHP domain y2276 PF00480 ROK family y2276 PF01325 Iron dependent repressor, N-terminal DNA binding domain y2277 PF03009 Glycerophosphoryl diester phosphodiesterase family y2279 PF00528 Binding-protein-dependent transport system inner membrane component y2280 PF00528 Binding-protein-dependent transport system inner membrane component y2283 PF03009 Glycerophosphoryl diester phosphodiesterase family y2285 PF01740 STAS domain y2285 PF00916 Sulfate permease family y2286 PF00793 DAHP synthetase I family y2287 PF13369 Transglutaminase-like superfamily y2288 PF04247 Invasion gene expression up-regulator, SirB y2289 PF13847 Methyltransferase domain y2289 PF17827 PrmC N-terminal domain y2290 PF00472 RF-1 domain y2290 PF03462 PCRF domain y2291 PF01488 Shikimate / quinate 5-dehydrogenase y2291 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain y2291 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain y2292 PF03550 Outer membrane lipoprotein LolB y2293 PF00288 GHMP kinases N terminal domain y2293 PF08544 GHMP kinases C terminal y2295 PF14572 Phosphoribosyl synthetase-associated domain y2295 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase y2296 PF10762 Protein of unknown function (DUF2583) y2297 PF01195 Peptidyl-tRNA hydrolase y2298 PF06071 Protein of unknown function (DUF933) y2298 PF01926 50S ribosome-binding GTPase y2306 PF02129 X-Pro dipeptidyl-peptidase (S15 family) y2307 PF00072 Response regulator receiver domain y2307 PF00486 Transcriptional regulatory protein, C terminal y2308 PF00512 His Kinase A (phospho-acceptor) domain y2308 PF00672 HAMP domain y2308 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y2318 PF08242 Methyltransferase domain y2323 PF00872 Transposase, Mutator family y2333 PF01370 NAD dependent epimerase/dehydratase family y2334 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal y2334 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III y2335 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III y2335 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal y2337 PF05962 HutD y2338 PF01979 Amidohydrolase family y2339 PF07702 UTRA domain y2339 PF00392 Bacterial regulatory proteins, gntR family y2340 PF01979 Amidohydrolase family y2342 PF01695 IstB-like ATP binding protein y2343 PF00665 Integrase core domain y2343 PF02796 Helix-turn-helix domain of resolvase y2345 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family y2346 PF04996 Succinylarginine dihydrolase y2347 PF00171 Aldehyde dehydrogenase family y2348 PF04958 Arginine N-succinyltransferase beta subunit y2349 PF00202 Aminotransferase class-III y2350 PF00155 Aminotransferase class I and II y2350 PF00392 Bacterial regulatory proteins, gntR family y2351 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term y2351 PF00672 HAMP domain y2351 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y2351 PF07730 Histidine kinase y2352 PF01699 Sodium/calcium exchanger protein y2353 PF02562 PhoH-like protein y2356 PF13994 PgaD-like protein y2357 PF00535 Glycosyl transferase family 2 y2358 PF14883 Hypothetical glycosyl hydrolase family 13 y2358 PF01522 Polysaccharide deacetylase y2360 PF00557 Metallopeptidase family M24 y2361 PF09313 Domain of unknown function (DUF1971) y2361 PF03848 Tellurite resistance protein TehB y2363 PF00578 AhpC/TSA family y2364 PF02687 FtsX-like permease family y2364 PF12704 MacB-like periplasmic core domain y2364 PF00005 ABC transporter y2366 PF00005 ABC transporter y2366 PF02687 FtsX-like permease family y2366 PF12704 MacB-like periplasmic core domain y2368 PF10634 Fe2+ transport protein y2370 PF03239 Iron permease FTR1 family y2372 PF04960 Glutaminase y2373 PF00455 DeoR C terminal sensor domain y2373 PF08220 DeoR-like helix-turn-helix domain y2374 PF00324 Amino acid permease y2375 PF00155 Aminotransferase class I and II y2376 PF02508 Rnf-Nqr subunit, membrane protein y2378 PF04909 Amidohydrolase y2382 PF03466 LysR substrate binding domain y2382 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y2383 PF03328 HpcH/HpaI aldolase/citrate lyase family y2384 PF01575 MaoC like domain y2385 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain y2385 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain y2386 PF00196 Bacterial regulatory proteins, luxR family y2386 PF00072 Response regulator receiver domain y2387 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y2387 PF00497 Bacterial extracellular solute-binding proteins, family 3 y2387 PF01627 Hpt domain y2387 PF00989 PAS fold y2387 PF00512 His Kinase A (phospho-acceptor) domain y2387 PF00072 Response regulator receiver domain y2389 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain y2389 PF02753 Pili assembly chaperone PapD, C-terminal domain y2390 PF13954 PapC N-terminal domain y2390 PF00577 Outer membrane usher protein y2390 PF13953 PapC C-terminal domain y2392 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain y2392 PF02753 Pili assembly chaperone PapD, C-terminal domain y2393 PF00589 Phage integrase family y2393 PF13356 Arm DNA-binding domain y2394 PF00425 chorismate binding enzyme y2395 PF07690 Major Facilitator Superfamily y2396 PF00664 ABC transporter transmembrane region y2396 PF00005 ABC transporter y2397 PF00664 ABC transporter transmembrane region y2397 PF04954 Siderophore-interacting protein y2397 PF08021 Siderophore-interacting FAD-binding domain y2397 PF00005 ABC transporter y2399 PF00668 Condensation domain y2399 PF00501 AMP-binding enzyme y2399 PF08242 Methyltransferase domain y2399 PF00550 Phosphopantetheine attachment site y2400 PF00109 Beta-ketoacyl synthase, N-terminal domain y2400 PF00698 Acyl transferase domain y2400 PF00668 Condensation domain y2400 PF16197 Ketoacyl-synthetase C-terminal extension y2400 PF02801 Beta-ketoacyl synthase, C-terminal domain y2400 PF00550 Phosphopantetheine attachment site y2402 PF00975 Thioesterase domain y2403 PF13193 AMP-binding enzyme C-terminal domain y2403 PF00501 AMP-binding enzyme y2404 PF07715 TonB-dependent Receptor Plug Domain y2404 PF00593 TonB dependent receptor y2410 PF01695 IstB-like ATP binding protein y2411 PF02796 Helix-turn-helix domain of resolvase y2411 PF00665 Integrase core domain y2414 PF08402 TOBE domain y2414 PF00005 ABC transporter y2415 PF00528 Binding-protein-dependent transport system inner membrane component y2416 PF00528 Binding-protein-dependent transport system inner membrane component y2418 PF01408 Oxidoreductase family, NAD-binding Rossmann fold y2418 PF02894 Oxidoreductase family, C-terminal alpha/beta domain y2424 PF00872 Transposase, Mutator family y2425 PF00872 Transposase, Mutator family y2441 PF01066 CDP-alcohol phosphatidyltransferase y2442 PF02151 UvrB/uvrC motif y2442 PF08459 UvrC Helix-hairpin-helix N-terminal y2442 PF01541 GIY-YIG catalytic domain y2443 PF00072 Response regulator receiver domain y2443 PF00196 Bacterial regulatory proteins, luxR family y2444 PF06942 GlpM protein y2446 PF13505 Outer membrane protein beta-barrel domain y2447 PF00324 Amino acid permease y2448 PF01344 Kelch motif y2449 PF03358 NADPH-dependent FMN reductase y2450 PF04261 Dyp-type peroxidase family y2451 PF13473 Cupredoxin-like domain y2451 PF09375 Imelysin y2452 PF03239 Iron permease FTR1 family y2453 PF00474 Sodium:solute symporter family y2455 PF01619 Proline dehydrogenase y2455 PF00171 Aldehyde dehydrogenase family y2455 PF18327 Proline utilization A proline dehydrogenase N-terminal domain y2455 PF14850 DNA-binding domain of Proline dehydrogenase y2462 PF00291 Pyridoxal-phosphate dependent enzyme y2463 PF02899 Phage integrase, N-terminal SAM-like domain y2464 PF04542 Sigma-70 region 2 y2464 PF04539 Sigma-70 region 3 y2464 PF04545 Sigma-70, region 4 y2465 PF00700 Bacterial flagellin C-terminal helical region y2465 PF08884 Flagellin D3 domain y2465 PF00669 Bacterial flagellin N-terminal helical region y2466 PF02465 Flagellar hook-associated protein 2 N-terminus y2466 PF07195 Flagellar hook-associated protein 2 C-terminus y2466 PF07196 Flagellin hook IN motif y2467 PF02561 Flagellar protein FliS y2468 PF05400 Flagellar protein FliT y2469 PF12833 Helix-turn-helix domain y2471 PF02743 Cache domain y2471 PF00672 HAMP domain y2471 PF00211 Adenylate and Guanylate cyclase catalytic domain y2472 PF01966 HD domain y2473 PF00730 HhH-GPD superfamily base excision DNA repair protein y2475 PF02049 Flagellar hook-basal body complex protein FliE y2476 PF01514 Secretory protein of YscJ/FliF family y2476 PF08345 Flagellar M-ring protein C-terminal y2477 PF14842 FliG N-terminal domain y2477 PF14841 FliG middle domain y2477 PF01706 FliG C-terminal domain y2478 PF02108 Flagellar assembly protein FliH y2479 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain y2479 PF18269 T3SS EscN ATPase C-terminal domain y2480 PF02050 Flagellar FliJ protein y2481 PF02120 Flagellar hook-length control protein FliK y2482 PF03748 Flagellar basal body-associated protein FliL y2483 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term y2483 PF02154 Flagellar motor switch protein FliM y2484 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term y2484 PF16973 Flagellar motor switch protein FliN N-terminal y2485 PF04347 Flagellar biosynthesis protein, FliO y2486 PF00813 FliP family y2487 PF01313 Bacterial export proteins, family 3 y2488 PF01311 Bacterial export proteins, family 1 y2491 PF00294 pfkB family carbohydrate kinase y2492 PF02653 Branched-chain amino acid transport system / permease component y2493 PF00005 ABC transporter y2494 PF13407 Periplasmic binding protein domain y2495 PF02653 Branched-chain amino acid transport system / permease component y2497 PF00596 Class II Aldolase and Adducin N-terminal domain y2498 PF04198 Putative sugar-binding domain y2499 PF00669 Bacterial flagellin N-terminal helical region y2501 PF00460 Flagella basal body rod protein y2501 PF06429 Flagellar basal body rod FlgEFG protein C-terminal y2502 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase y2502 PF10135 Rod binding protein y2503 PF02119 Flagellar P-ring protein y2504 PF02107 Flagellar L-ring protein y2505 PF06429 Flagellar basal body rod FlgEFG protein C-terminal y2505 PF00460 Flagella basal body rod protein y2506 PF00460 Flagella basal body rod protein y2506 PF06429 Flagellar basal body rod FlgEFG protein C-terminal y2507 PF00460 Flagella basal body rod protein y2507 PF07559 Flagellar basal body protein FlaE y2507 PF06429 Flagellar basal body rod FlgEFG protein C-terminal y2508 PF13861 FlgD Tudor-like domain y2508 PF13860 FlgD Ig-like domain y2508 PF03963 Flagellar hook capping protein - N-terminal region y2509 PF00460 Flagella basal body rod protein y2509 PF06429 Flagellar basal body rod FlgEFG protein C-terminal y2510 PF00460 Flagella basal body rod protein y2511 PF17656 FlgA N-terminal domain y2511 PF13144 Chaperone for flagella basal body P-ring formation y2513 PF04316 Anti-sigma-28 factor, FlgM y2514 PF05130 FlgN protein y2517 PF06366 Flagellar protein FlhE y2518 PF00771 FHIPEP family y2519 PF01312 FlhB HrpN YscU SpaS Family y2521 PF10709 Protein of unknown function (DUF2511) y2523 PF04234 CopC domain y2524 PF00210 Ferritin-like domain y2525 PF06440 DNA polymerase III, theta subunit y2526 PF00561 alpha/beta hydrolase fold y2527 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain y2527 PF00326 Prolyl oligopeptidase family y2528 PF13995 YebF-like protein y2530 PF07130 YebG protein y2531 PF03880 DbpA RNA binding domain y2531 PF00271 Helicase conserved C-terminal domain y2531 PF00270 DEAD/DEAH box helicase y2533 PF02222 ATP-grasp domain y2534 PF03701 Uncharacterised protein family (UPF0181) y2535 PF04715 Anthranilate synthase component I, N terminal region y2535 PF00425 chorismate binding enzyme y2536 PF00293 NUDIX domain y2537 PF03315 Serine dehydratase beta chain y2537 PF03313 Serine dehydratase alpha chain y2538 PF01613 Flavin reductase like domain y2539 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal y2539 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal y2540 PF07690 Major Facilitator Superfamily y2541 PF03328 HpcH/HpaI aldolase/citrate lyase family y2542 PF01557 Fumarylacetoacetate (FAA) hydrolase family y2544 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase y2545 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase y2546 PF00171 Aldehyde dehydrogenase family y2548 PF01047 MarR family y2549 PF03741 Integral membrane protein TerC family y2549 PF03471 Transporter associated domain y2550 PF03471 Transporter associated domain y2550 PF03741 Integral membrane protein TerC family y2551 PF03610 PTS system fructose IIA component y2551 PF03830 PTS system sorbose subfamily IIB component y2552 PF03609 PTS system sorbose-specific iic component y2553 PF03613 PTS system mannose/fructose/sorbose family IID component y2554 PF06173 Protein of unknown function (DUF986) y2555 PF02659 Putative manganese efflux pump y2556 PF00593 TonB dependent receptor y2556 PF07715 TonB-dependent Receptor Plug Domain y2559 PF13426 PAS domain y2559 PF00563 EAL domain y2559 PF08448 PAS fold y2559 PF00990 Diguanylate cyclase, GGDEF domain y2559 PF08447 PAS fold y2559 PF05231 MASE1 y2561 PF13847 Methyltransferase domain y2563 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP y2564 PF00324 Amino acid permease y2567 PF13974 YebO-like protein y2568 PF13996 YobH-like protein y2569 PF10964 Protein of unknown function (DUF2766) y2570 PF12833 Helix-turn-helix domain y2573 PF00005 ABC transporter y2573 PF00664 ABC transporter transmembrane region y2576 PF06167 Glucose-regulated metallo-peptidase M90 y2577 PF01695 IstB-like ATP binding protein y2578 PF00665 Integrase core domain y2578 PF02796 Helix-turn-helix domain of resolvase y2579 PF00356 Bacterial regulatory proteins, lacI family y2579 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family y2580 PF00872 Transposase, Mutator family y2581 PF01306 LacY proton/sugar symporter y2582 PF16874 Glycosyl hydrolase family 36 C-terminal domain y2582 PF16875 Glycosyl hydrolase family 36 N-terminal domain y2584 PF01648 4'-phosphopantetheinyl transferase superfamily y2584 PF17837 4'-phosphopantetheinyl transferase N-terminal domain y2585 PF03480 Bacterial extracellular solute-binding protein, family 7 y2587 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component y2588 PF00196 Bacterial regulatory proteins, luxR family y2588 PF00072 Response regulator receiver domain y2589 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) y2591 PF01522 Polysaccharide deacetylase y2593 PF01554 MatE y2595 PF00764 Arginosuccinate synthase y2596 PF01070 FMN-dependent dehydrogenase y2598 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain y2598 PF13378 Enolase C-terminal domain-like y2599 PF01557 Fumarylacetoacetate (FAA) hydrolase family y2601 PF04134 Protein of unknown function, DUF393 y2602 PF07690 Major Facilitator Superfamily y2605 PF02369 Bacterial Ig-like domain (group 1) y2605 PF09134 Invasin, domain 3 y2605 PF11924 Inverse autotransporter, beta-domain y2606 PF00872 Transposase, Mutator family y2607 PF04363 Protein of unknown function (DUF496) y2610 PF08411 Exonuclease C-terminal y2610 PF00929 Exonuclease y2612 PF13520 Amino acid permease y2613 PF00465 Iron-containing alcohol dehydrogenase y2615 PF02653 Branched-chain amino acid transport system / permease component y2617 PF01370 NAD dependent epimerase/dehydratase family y2620 PF01634 ATP phosphoribosyltransferase y2620 PF08029 HisG, C-terminal domain y2621 PF00815 Histidinol dehydrogenase y2622 PF00155 Aminotransferase class I and II y2623 PF00475 Imidazoleglycerol-phosphate dehydratase y2625 PF00117 Glutamine amidotransferase class-I y2626 PF00977 Histidine biosynthesis protein y2627 PF00977 Histidine biosynthesis protein y2628 PF01502 Phosphoribosyl-AMP cyclohydrolase y2628 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase y2629 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain y2629 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase y2630 PF00483 Nucleotidyl transferase y2631 PF00483 Nucleotidyl transferase y2633 PF07715 TonB-dependent Receptor Plug Domain y2633 PF00593 TonB dependent receptor y2633 PF07660 Secretin and TonB N terminus short domain y2634 PF01497 Periplasmic binding protein y2635 PF01032 FecCD transport family y2636 PF01032 FecCD transport family y2637 PF00005 ABC transporter y2638 PF04183 IucA / IucC family y2638 PF06276 Ferric iron reductase FhuF-like transporter y2640 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) y2641 PF00282 Pyridoxal-dependent decarboxylase conserved domain y2642 PF06276 Ferric iron reductase FhuF-like transporter y2642 PF11575 FhuF 2Fe-2S C-terminal domain y2643 PF00571 CBS domain y2643 PF03471 Transporter associated domain y2643 PF03741 Integral membrane protein TerC family y2644 PF05170 AsmA family y2645 PF00692 dUTPase y2646 PF00485 Phosphoribulokinase / Uridine kinase family y2647 PF10609 NUBPL iron-transfer P-loop NTPase y2648 PF09334 tRNA synthetases class I (M) y2648 PF01588 Putative tRNA binding domain y2649 PF01797 Transposase IS200 like y2653 PF07690 Major Facilitator Superfamily y2654 PF03788 LrgA family y2655 PF04172 LrgB-like family y2657 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region y2657 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region y2658 PF00390 Malic enzyme, N-terminal domain y2658 PF03949 Malic enzyme, NAD binding domain y2659 PF02698 DUF218 domain y2660 PF02653 Branched-chain amino acid transport system / permease component y2661 PF00005 ABC transporter y2662 PF13407 Periplasmic binding protein domain y2663 PF04235 Protein of unknown function (DUF418) y2664 PF01227 GTP cyclohydrolase I y2665 PF06779 Uncharacterised MFS-type transporter YbfB y2666 PF03466 LysR substrate binding domain y2666 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y2667 PF00107 Zinc-binding dehydrogenase y2667 PF08240 Alcohol dehydrogenase GroES-like domain y2668 PF00756 Putative esterase y2670 PF13533 Biotin-lipoyl like y2671 PF00005 ABC transporter y2673 PF00994 Probable molybdopterin binding domain y2673 PF03453 MoeA N-terminal region (domain I and II) y2673 PF03454 MoeA C-terminal region (domain IV) y2674 PF00899 ThiF family y2675 PF00872 Transposase, Mutator family y2677 PF12848 ABC transporter y2677 PF00005 ABC transporter y2690 PF13592 Winged helix-turn helix y2690 PF13358 DDE superfamily endonuclease y2691 PF13592 Winged helix-turn helix y2691 PF13358 DDE superfamily endonuclease y2699 PF10431 C-terminal, D2-small domain, of ClpB protein y2699 PF00004 ATPase family associated with various cellular activities (AAA) y2699 PF17871 AAA lid domain y2699 PF07724 AAA domain (Cdc48 subfamily) y2702 PF05736 OprF membrane domain y2702 PF00691 OmpA family y2707 PF00698 Acyl transferase domain y2710 PF00378 Enoyl-CoA hydratase/isomerase y2712 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal y2712 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal y2714 PF02801 Beta-ketoacyl synthase, C-terminal domain y2714 PF00109 Beta-ketoacyl synthase, N-terminal domain y2715 PF07977 FabA-like domain y2718 PF08031 Berberine and berberine like y2718 PF01565 FAD binding domain y2720 PF13610 DDE domain y2723 PF04358 DsrC like protein y2724 PF00708 Acylphosphatase y2725 PF17785 PUA-like domain y2725 PF10672 S-adenosylmethionine-dependent methyltransferase y2726 PF08755 Hemimethylated DNA-binding protein YccV like y2727 PF13380 CoA binding domain y2728 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) y2729 PF02142 MGS-like domain y2730 PF12462 DNA helicase IV / RNA helicase N terminal y2730 PF13361 UvrD-like helicase C-terminal domain y2730 PF00580 UvrD/REP helicase N-terminal domain y2731 PF03733 Inner membrane component domain y2732 PF12805 FUSC-like inner membrane protein yccS y2733 PF04994 TfoX C-terminal domain y2733 PF04993 TfoX N-terminal domain y2734 PF03846 Cell division inhibitor SulA y2735 PF00691 OmpA family y2735 PF01389 OmpA-like transmembrane domain y2736 PF01797 Transposase IS200 like y2737 PF17414 MatP C-terminal ribbon-helix-helix domain y2737 PF06303 MatP N-terminal domain y2739 PF05362 Lon protease (S16) C-terminal proteolytic domain y2739 PF13654 AAA domain y2740 PF07977 FabA-like domain y2741 PF00109 Beta-ketoacyl synthase, N-terminal domain y2741 PF02801 Beta-ketoacyl synthase, C-terminal domain y2742 PF02796 Helix-turn-helix domain of resolvase y2742 PF00665 Integrase core domain y2743 PF01695 IstB-like ATP binding protein y2744 PF02801 Beta-ketoacyl synthase, C-terminal domain y2744 PF00109 Beta-ketoacyl synthase, N-terminal domain y2745 PF01797 Transposase IS200 like y2746 PF03886 ABC-type transport auxiliary lipoprotein component y2747 PF02470 MlaD protein y2749 PF04403 Paraquat-inducible protein A y2750 PF12848 ABC transporter y2750 PF16326 ABC transporter C-terminal domain y2750 PF00005 ABC transporter y2751 PF02926 THUMP domain y2751 PF10672 S-adenosylmethionine-dependent methyltransferase y2751 PF01170 Putative RNA methylase family UPF0020 y2752 PF03476 MOSC N-terminal beta barrel domain y2752 PF03473 MOSC domain y2752 PF00111 2Fe-2S iron-sulfur cluster binding domain y2753 PF07126 Cell-division protein ZapC y2755 PF01180 Dihydroorotate dehydrogenase y2756 PF11940 Domain of unknown function (DUF3458) Ig-like fold y2756 PF17432 Domain of unknown function (DUF3458_C) ARM repeats y2756 PF01433 Peptidase family M1 domain y2757 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family y2757 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain y2758 PF00152 tRNA synthetases class II (D, K and N) y2758 PF01336 OB-fold nucleic acid binding domain y2759 PF00267 Gram-negative porin y2760 PF00155 Aminotransferase class I and II y2761 PF00753 Metallo-beta-lactamase superfamily y2762 PF05951 Bacterial protein of unknown function (DUF882) y2763 PF01471 Putative peptidoglycan binding domain y2763 PF03734 L,D-transpeptidase catalytic domain y2764 PF01797 Transposase IS200 like y2765 PF04310 MukB N-terminal y2765 PF16330 MukB hinge domain y2766 PF04288 MukE-like family y2767 PF17193 MukF C-terminal domain y2767 PF17192 MukF middle domain y2767 PF03882 MukF winged-helix domain y2770 PF01636 Phosphotransferase enzyme family y2772 PF02348 Cytidylyltransferase y2774 PF00313 'Cold-shock' DNA-binding domain y2775 PF07063 Domain of unknown function (DUF1338) y2776 PF02606 Tetraacyldisaccharide-1-P 4'-kinase y2777 PF00005 ABC transporter y2777 PF00664 ABC transporter transmembrane region y2778 PF03772 Competence protein y2778 PF00753 Metallo-beta-lactamase superfamily y2779 PF00216 Bacterial DNA-binding protein y2781 PF00575 S1 RNA binding domain y2782 PF02224 Cytidylate kinase y2783 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) y2784 PF00266 Aminotransferase class-V y2786 PF05662 Coiled stalk of trimeric autotransporter adhesin y2786 PF03895 YadA-like membrane anchor domain y2786 PF13018 Extended Signal Peptide of Type V secretion system y2786 PF05662 Coiled stalk of trimeric autotransporter adhesin y2786 PF05658 Head domain of trimeric autotransporter adhesin y2786 PF03895 YadA-like membrane anchor domain y2786 PF13018 Extended Signal Peptide of Type V secretion system y2786 PF05658 Head domain of trimeric autotransporter adhesin y2787 PF17763 Glutaminase/Asparaginase C-terminal domain y2787 PF00710 Asparaginase, N-terminal y2788 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding y2788 PF18381 YcaO cyclodehydratase C-terminal domain y2789 PF01226 Formate/nitrite transporter y2790 PF01228 Glycine radical y2790 PF02901 Pyruvate formate lyase-like y2792 PF04055 Radical SAM superfamily y2793 PF02796 Helix-turn-helix domain of resolvase y2793 PF00665 Integrase core domain y2794 PF01695 IstB-like ATP binding protein y2796 PF02403 Seryl-tRNA synthetase N-terminal domain y2796 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) y2797 PF00004 ATPase family associated with various cellular activities (AAA) y2797 PF16193 AAA C-terminal domain y2797 PF12002 MgsA AAA+ ATPase C terminal y2798 PF03548 Outer membrane lipoprotein carrier protein LolA y2800 PF01580 FtsK/SpoIIIE family y2800 PF09397 Ftsk gamma domain y2800 PF13491 4TM region of DNA translocase FtsK/SpoIIIE y2800 PF17854 FtsK alpha domain y2801 PF01037 Lrp/AsnC ligand binding domain y2802 PF07992 Pyridine nucleotide-disulphide oxidoreductase y2803 PF00005 ABC transporter y2803 PF00664 ABC transporter transmembrane region y2805 PF00005 ABC transporter y2805 PF00664 ABC transporter transmembrane region y2806 PF03588 Leucyl/phenylalanyl-tRNA protein transferase y2807 PF01176 Translation initiation factor 1A / IF-1 y2808 PF01797 Transposase IS200 like y2809 PF07724 AAA domain (Cdc48 subfamily) y2809 PF10431 C-terminal, D2-small domain, of ClpB protein y2809 PF02861 Clp amino terminal domain, pathogenicity island component y2809 PF17871 AAA lid domain y2809 PF00004 ATPase family associated with various cellular activities (AAA) y2810 PF02617 ATP-dependent Clp protease adaptor protein ClpS y2813 PF00005 ABC transporter y2813 PF02687 FtsX-like permease family y2813 PF12704 MacB-like periplasmic core domain y2814 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion y2816 PF04393 Protein of unknown function (DUF535) y2817 PF11398 Protein of unknown function (DUF2813) y2818 PF03956 Lysine exporter LysO y2819 PF03063 Prismane/CO dehydrogenase family y2820 PF00175 Oxidoreductase NAD-binding domain y2820 PF00111 2Fe-2S iron-sulfur cluster binding domain y2820 PF00970 Oxidoreductase FAD-binding domain y2821 PF00205 Thiamine pyrophosphate enzyme, central domain y2821 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain y2821 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain y2823 PF01212 Beta-eliminating lyase y2824 PF11066 Protein of unknown function (DUF2867) y2824 PF13460 NAD(P)H-binding y2825 PF01370 NAD dependent epimerase/dehydratase family y2826 PF12883 Protein of unknown function (DUF3828) y2828 PF01817 Chorismate mutase type II y2829 PF00005 ABC transporter y2830 PF00497 Bacterial extracellular solute-binding proteins, family 3 y2831 PF00528 Binding-protein-dependent transport system inner membrane component y2832 PF00528 Binding-protein-dependent transport system inner membrane component y2834 PF00892 EamA-like transporter family y2835 PF10100 Staphylopine dehydrogenase y2836 PF03059 Nicotianamine synthase protein y2837 PF00005 ABC transporter y2838 PF01032 FecCD transport family y2839 PF01032 FecCD transport family y2844 PF00497 Bacterial extracellular solute-binding proteins, family 3 y2845 PF05958 tRNA (Uracil-5-)-methyltransferase y2846 PF10767 Protein of unknown function (DUF2593) y2847 PF00528 Binding-protein-dependent transport system inner membrane component y2848 PF00528 Binding-protein-dependent transport system inner membrane component y2849 PF00005 ABC transporter y2849 PF08402 TOBE domain y2851 PF13416 Bacterial extracellular solute-binding protein y2853 PF10722 Putative bacterial sensory transduction regulator y2854 PF07214 Protein of unknown function (DUF1418) y2855 PF00462 Glutaredoxin y2857 PF06826 Predicted Permease Membrane Region y2857 PF02080 TrkA-C domain y2859 PF01569 PAP2 superfamily y2860 PF01791 DeoC/LacD family aldolase y2861 PF08220 DeoR-like helix-turn-helix domain y2861 PF00455 DeoR C terminal sensor domain y2864 PF07943 Penicillin-binding protein 5, C-terminal domain y2864 PF00768 D-alanyl-D-alanine carboxypeptidase y2865 PF00528 Binding-protein-dependent transport system inner membrane component y2866 PF09383 NIL domain y2866 PF00005 ABC transporter y2867 PF03180 NLPA lipoprotein y2871 PF13417 Glutathione S-transferase, N-terminal domain y2871 PF00043 Glutathione S-transferase, C-terminal domain y2872 PF07715 TonB-dependent Receptor Plug Domain y2872 PF00593 TonB dependent receptor y2873 PF00005 ABC transporter y2874 PF01032 FecCD transport family y2876 PF00324 Amino acid permease y2877 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y2877 PF03466 LysR substrate binding domain y2878 PF03601 Conserved hypothetical protein 698 y2879 PF01261 Xylose isomerase-like TIM barrel y2880 PF13954 PapC N-terminal domain y2880 PF00577 Outer membrane usher protein y2880 PF13953 PapC C-terminal domain y2881 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain y2881 PF02753 Pili assembly chaperone PapD, C-terminal domain y2883 PF17550 Family of unknown function y2884 PF00486 Transcriptional regulatory protein, C terminal y2885 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit y2885 PF02378 Phosphotransferase system, EIIC y2886 PF00294 pfkB family carbohydrate kinase y2887 PF00381 PTS HPr component phosphorylation site y2887 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 y2888 PF00293 NUDIX domain y2889 PF02653 Branched-chain amino acid transport system / permease component y2890 PF00005 ABC transporter y2892 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) y2893 PF00370 FGGY family of carbohydrate kinases, N-terminal domain y2893 PF02782 FGGY family of carbohydrate kinases, C-terminal domain y2894 PF00171 Aldehyde dehydrogenase family y2896 PF01842 ACT domain y2896 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain y2896 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain y2898 PF03692 Putative zinc- or iron-chelating domain y2900 PF03222 Tryptophan/tyrosine permease family y2901 PF09285 Elongation factor P, C-terminal y2901 PF08207 Elongation factor P (EF-P) KOW-like domain y2901 PF01132 Elongation factor P (EF-P) OB domain y2902 PF03786 D-mannonate dehydratase (UxuA) y2903 PF01232 Mannitol dehydrogenase Rossmann domain y2903 PF08125 Mannitol dehydrogenase C-terminal domain y2904 PF00392 Bacterial regulatory proteins, gntR family y2904 PF07729 FCD domain y2906 PF07683 Cobalamin synthesis protein cobW C-terminal domain y2906 PF02492 CobW/HypB/UreG, nucleotide-binding domain y2907 PF01569 PAP2 superfamily y2908 PF00877 NlpC/P60 family y2909 PF00563 EAL domain y2909 PF12792 CSS motif domain associated with EAL y2910 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle y2911 PF00528 Binding-protein-dependent transport system inner membrane component y2912 PF00528 Binding-protein-dependent transport system inner membrane component y2912 PF12911 N-terminal TM domain of oligopeptide transport permease C y2913 PF08352 Oligopeptide/dipeptide transporter, C-terminal region y2913 PF00005 ABC transporter y2914 PF13989 YejG-like protein y2916 PF07690 Major Facilitator Superfamily y2917 PF01479 S4 domain y2917 PF00849 RNA pseudouridylate synthase y2919 PF00271 Helicase conserved C-terminal domain y2919 PF04851 Type III restriction enzyme, res subunit y2920 PF01386 Ribosomal L25p family y2921 PF01797 Transposase IS200 like y2922 PF04245 37-kD nucleoid-associated bacterial protein y2923 PF07208 Protein of unknown function (DUF1414) y2924 PF11893 Domain of unknown function (DUF3413) y2924 PF00884 Sulfatase y2928 PF05638 Type VI secretion system effector, Hcp y2932 PF00232 Glycosyl hydrolase family 1 y2933 PF01380 SIS domain y2933 PF01418 Helix-turn-helix domain, rpiR family y2934 PF07484 Phage Tail Collar Domain y2937 PF04865 Baseplate J-like protein y2946 PF17482 Phage tail sheath C-terminal domain y2946 PF04984 Phage tail sheath protein subtilisin-like domain y2949 PF01261 Xylose isomerase-like TIM barrel y2950 PF00455 DeoR C terminal sensor domain y2950 PF08220 DeoR-like helix-turn-helix domain y2951 PF00596 Class II Aldolase and Adducin N-terminal domain y2952 PF07005 Sugar-binding N-terminal domain y2952 PF17042 Nucleotide-binding C-terminal domain y2953 PF06530 Phage antitermination protein Q y2954 PF00717 Peptidase S24-like y2954 PF01381 Helix-turn-helix y2956 PF06183 DinI-like family y2957 PF01278 Omptin family y2958 PF00672 HAMP domain y2958 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain y2958 PF02743 Cache domain y2960 PF12706 Beta-lactamase superfamily domain y2964 PF00144 Beta-lactamase y2965 PF01797 Transposase IS200 like y2966 PF00267 Gram-negative porin y2967 PF07690 Major Facilitator Superfamily y2968 PF16359 RcsD-ABL domain y2968 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y2968 PF01627 Hpt domain y2969 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y2969 PF16359 RcsD-ABL domain y2969 PF01627 Hpt domain y2970 PF00072 Response regulator receiver domain y2970 PF00196 Bacterial regulatory proteins, luxR family y2971 PF00512 His Kinase A (phospho-acceptor) domain y2971 PF09456 RcsC Alpha-Beta-Loop (ABL) y2971 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y2971 PF00072 Response regulator receiver domain y2972 PF03989 DNA gyrase C-terminal domain, beta-propeller y2972 PF00521 DNA gyrase/topoisomerase IV, subunit A y2974 PF00317 Ribonucleotide reductase, all-alpha domain y2974 PF03477 ATP cone domain y2974 PF02867 Ribonucleotide reductase, barrel domain y2975 PF00268 Ribonucleotide reductase, small chain y2976 PF00111 2Fe-2S iron-sulfur cluster binding domain y2977 PF03974 Ecotin y2978 PF00994 Probable molybdopterin binding domain y2979 PF03222 Tryptophan/tyrosine permease family y2980 PF07437 YfaZ precursor y2981 PF06628 Catalase-related immune-responsive y2981 PF00199 Catalase y2982 PF13307 Helicase C-terminal domain y2982 PF06733 DEAD_2 y2983 PF00267 Gram-negative porin y2985 PF00892 EamA-like transporter family y2987 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain y2987 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain y2987 PF01276 Orn/Lys/Arg decarboxylase, major domain y2988 PF13520 Amino acid permease y2990 PF00528 Binding-protein-dependent transport system inner membrane component y2991 PF00005 ABC transporter y2992 PF00528 Binding-protein-dependent transport system inner membrane component y2993 PF04069 Substrate binding domain of ABC-type glycine betaine transport system y2994 PF04069 Substrate binding domain of ABC-type glycine betaine transport system y2995 PF00581 Rhodanese-like domain y2998 PF00005 ABC transporter y2999 PF00005 ABC transporter y3000 PF02653 Branched-chain amino acid transport system / permease component y3001 PF02653 Branched-chain amino acid transport system / permease component y3002 PF13188 PAS domain y3002 PF00158 Sigma-54 interaction domain y3002 PF02954 Bacterial regulatory protein, Fis family y3003 PF07308 Protein of unknown function (DUF1456) y3004 PF00528 Binding-protein-dependent transport system inner membrane component y3005 PF00528 Binding-protein-dependent transport system inner membrane component y3007 PF00005 ABC transporter y3010 PF01844 HNH endonuclease y3011 PF01928 CYTH domain y3012 PF09330 D-lactate dehydrogenase, membrane binding y3012 PF01565 FAD binding domain y3013 PF00768 D-alanyl-D-alanine carboxypeptidase y3015 PF01207 Dihydrouridine synthase (Dus) y3017 PF01797 Transposase IS200 like y3018 PF01027 Inhibitor of apoptosis-promoting Bax1 y3019 PF02391 MoaE protein y3020 PF02597 ThiS family y3021 PF01967 MoaC family y3023 PF04055 Radical SAM superfamily y3023 PF06463 Molybdenum Cofactor Synthesis C y3024 PF01933 Uncharacterised protein family UPF0052 y3025 PF09905 DNA-binding protein VF530 y3026 PF02151 UvrB/uvrC motif y3026 PF12344 Ultra-violet resistance protein B y3026 PF00271 Helicase conserved C-terminal domain y3026 PF04851 Type III restriction enzyme, res subunit y3026 PF17757 UvrB interaction domain y3029 PF08241 Methyltransferase domain y3030 PF00155 Aminotransferase class I and II y3031 PF04055 Radical SAM superfamily y3031 PF06968 Biotin and Thiamin Synthesis associated domain y3032 PF00202 Aminotransferase class-III y3033 PF10282 Lactonase, 7-bladed beta-propeller y3035 PF00005 ABC transporter y3035 PF03459 TOBE domain y3036 PF00528 Binding-protein-dependent transport system inner membrane component y3038 PF10766 Multidrug efflux pump-associated protein AcrZ y3040 PF03459 TOBE domain y3040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y3041 PF00005 ABC transporter y3043 PF16363 GDP-mannose 4,6 dehydratase y3044 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain y3044 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain y3045 PF00288 GHMP kinases N terminal domain y3045 PF10509 Galactokinase galactose-binding signature y3045 PF08544 GHMP kinases C terminal y3048 PF00300 Histidine phosphatase superfamily (branch 1) y3049 PF00793 DAHP synthetase I family y3050 PF01545 Cation efflux family y3051 PF04973 Nicotinamide mononucleotide transporter y3052 PF02445 Quinolinate synthetase A protein y3053 PF16331 TolA binding protein trimerisation y3053 PF13174 Tetratricopeptide repeat y3054 PF00691 OmpA family y3055 PF04052 TolB amino-terminal domain y3055 PF07676 WD40-like Beta Propeller Repeat y3056 PF06519 TolA C-terminal y3056 PF06519 TolA C-terminal y3057 PF02472 Biopolymer transport protein ExbD/TolR y3058 PF01618 MotA/TolQ/ExbB proton channel family y3059 PF03061 Thioesterase superfamily y3060 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) y3061 PF08173 Membrane bound YbgT-like protein y3062 PF02322 Cytochrome bd terminal oxidase subunit II y3063 PF01654 Cytochrome bd terminal oxidase subunit I y3064 PF00549 CoA-ligase y3064 PF02629 CoA binding domain y3065 PF00549 CoA-ligase y3065 PF08442 ATP-grasp domain y3066 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) y3066 PF00364 Biotin-requiring enzyme y3066 PF02817 e3 binding domain y3067 PF02779 Transketolase, pyrimidine binding domain y3067 PF16078 2-oxoglutarate dehydrogenase N-terminus y3067 PF00676 Dehydrogenase E1 component y3067 PF16870 2-oxoglutarate dehydrogenase C-terminal y3068 PF13085 2Fe-2S iron-sulfur cluster binding domain y3069 PF02910 Fumarate reductase flavoprotein C-term y3069 PF00890 FAD binding domain y3070 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit y3071 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit y3072 PF00285 Citrate synthase, C-terminal domain y3073 PF01025 GrpE y3074 PF01513 ATP-NAD kinase y3075 PF02463 RecF/RecN/SMC N terminal domain y3076 PF04355 SmpA / OmlA family y3077 PF03658 RnfH family Ubiquitin y3078 PF03364 Polyketide cyclase / dehydrase and lipid transport y3079 PF01668 SmpB protein y3080 PF01797 Transposase IS200 like y3081 PF00589 Phage integrase family y3081 PF13356 Arm DNA-binding domain y3090 PF00665 Integrase core domain y3090 PF02796 Helix-turn-helix domain of resolvase y3091 PF01695 IstB-like ATP binding protein y3093 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin y3094 PF00929 Exonuclease y3095 PF00075 RNase H y3096 PF08241 Methyltransferase domain y3097 PF16123 Hydroxyacylglutathione hydrolase C-terminus y3097 PF00753 Metallo-beta-lactamase superfamily y3098 PF01476 LysM domain y3098 PF01464 Transglycosylase SLT domain y3099 PF03372 Endonuclease/Exonuclease/phosphatase family y3101 PF00248 Aldo/keto reductase family y3104 PF09383 NIL domain y3104 PF00005 ABC transporter y3105 PF00528 Binding-protein-dependent transport system inner membrane component y3106 PF03180 NLPA lipoprotein y3107 PF16358 RcsF lipoprotein y3108 PF01980 tRNA-methyltransferase O y3108 PF18389 TrmO C-terminal domain y3109 PF04073 Aminoacyl-tRNA editing domain y3109 PF03129 Anticodon binding domain y3109 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) y3110 PF17185 NlpE C-terminal OB domain y3110 PF04170 NlpE N-terminal domain y3111 PF00472 RF-1 domain y3112 PF07152 YaeQ protein y3113 PF06786 Uncharacterised protein family (UPF0253) y3115 PF07073 Modulator of Rho-dependent transcription termination (ROF) y3116 PF00034 Cytochrome c y3117 PF01171 PP-loop family y3117 PF09179 TilS substrate binding domain y3117 PF11734 TilS substrate C-terminal domain y3118 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily y3119 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit y3120 PF14579 Helix-hairpin-helix motif y3120 PF17657 Bacterial DNA polymerase III alpha subunit finger domain y3120 PF02811 PHP domain y3120 PF01336 OB-fold nucleic acid binding domain y3120 PF07733 Bacterial DNA polymerase III alpha NTPase domain y3121 PF01351 Ribonuclease HII y3122 PF02684 Lipid-A-disaccharide synthetase y3123 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 y3123 PF00132 Bacterial transferase hexapeptide (six repeats) y3124 PF07977 FabA-like domain y3125 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD y3125 PF00132 Bacterial transferase hexapeptide (six repeats) y3126 PF03938 Outer membrane protein (OmpH-like) y3127 PF01103 Surface antigen y3127 PF07244 Surface antigen variable number repeat y3128 PF02163 Peptidase family M50 y3128 PF17820 PDZ domain y3130 PF01255 Putative undecaprenyl diphosphate synthase y3131 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase y3131 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain y3131 PF13288 DXP reductoisomerase C-terminal domain y3133 PF01765 Ribosome recycling factor y3134 PF00696 Amino acid kinase family y3135 PF00889 Elongation factor TS y3137 PF00318 Ribosomal protein S2 y3138 PF00557 Metallopeptidase family M24 y3139 PF01909 Nucleotidyltransferase domain y3139 PF08335 GlnD PII-uridylyltransferase y3139 PF01966 HD domain y3139 PF01842 ACT domain y3140 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal y3140 PF00132 Bacterial transferase hexapeptide (six repeats) y3140 PF14602 Hexapeptide repeat of succinyl-transferase y3141 PF11944 Protein of unknown function (DUF3461) y3142 PF00258 Flavodoxin y3143 PF00849 RNA pseudouridylate synthase y3144 PF04287 tRNA pseudouridine synthase C y3145 PF01797 Transposase IS200 like y3146 PF07348 Syd protein (SUKH-2) y3147 PF14489 QueF-like protein y3147 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term y3148 PF03641 Possible lysine decarboxylase y3148 PF11892 Domain of unknown function (DUF3412) y3148 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases y3149 PF02796 Helix-turn-helix domain of resolvase y3149 PF00665 Integrase core domain y3150 PF01695 IstB-like ATP binding protein y3151 PF01367 5'-3' exonuclease, C-terminal SAM fold y3151 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain y3152 PF18125 RlmM ferredoxin-like domain y3152 PF01728 FtsJ-like methyltransferase y3153 PF04241 Protein of unknown function (DUF423) y3154 PF03466 LysR substrate binding domain y3154 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y3156 PF00266 Aminotransferase class-V y3157 PF02657 Fe-S metabolism associated domain y3158 PF00899 ThiF family y3159 PF06725 3D domain y3159 PF03562 MltA specific insert domain y3161 PF11741 AMIN domain y3161 PF01520 N-acetylmuramoyl-L-alanine amidase y3162 PF00696 Amino acid kinase family y3162 PF00583 Acetyltransferase (GNAT) family y3163 PF13538 UvrD-like helicase C-terminal domain y3164 PF12705 PD-(D/E)XK nuclease superfamily y3164 PF00580 UvrD/REP helicase N-terminal domain y3164 PF13361 UvrD-like helicase C-terminal domain y3165 PF05193 Peptidase M16 inactive domain y3165 PF00675 Insulinase (Peptidase family M16) y3165 PF16187 Middle or third domain of peptidase_M16 y3166 PF17946 RecC C-terminal domain y3171 PF00303 Thymidylate synthase y3172 PF01790 Prolipoprotein diacylglyceryl transferase y3173 PF02896 PEP-utilising enzyme, TIM barrel domain y3173 PF00391 PEP-utilising enzyme, mobile domain y3173 PF05524 PEP-utilising enzyme, N-terminal y3173 PF01590 GAF domain y3174 PF00293 NUDIX domain y3175 PF02976 DNA mismatch repair enzyme MutH y3177 PF00248 Aldo/keto reductase family y3180 PF07690 Major Facilitator Superfamily y3181 PF01553 Acyltransferase y3181 PF13193 AMP-binding enzyme C-terminal domain y3181 PF00501 AMP-binding enzyme y3182 PF00384 Molybdopterin oxidoreductase y3182 PF01568 Molydopterin dinucleotide binding domain y3183 PF00356 Bacterial regulatory proteins, lacI family y3184 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain y3184 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain y3185 PF03466 LysR substrate binding domain y3185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y3186 PF07690 Major Facilitator Superfamily y3187 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y3187 PF03466 LysR substrate binding domain y3190 PF02203 Tar ligand binding domain homologue y3190 PF00672 HAMP domain y3190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain y3195 PF01478 Type IV leader peptidase family y3195 PF06750 Bacterial Peptidase A24 N-terminal domain y3201 PF07963 Prokaryotic N-terminal methylation motif y3201 PF08334 Type II secretion system (T2SS), protein G y3202 PF00482 Type II secretion system (T2SS), protein F y3204 PF00263 Bacterial type II and III secretion system protein y3204 PF03958 Bacterial type II/III secretion system short domain y3207 PF00484 Carbonic anhydrase y3211 PF02278 Polysaccharide lyase family 8, super-sandwich domain y3211 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain y3211 PF09093 Lyase, catalytic y3211 PF09092 Lyase, N terminal y3212 PF01695 IstB-like ATP binding protein y3213 PF00665 Integrase core domain y3213 PF02796 Helix-turn-helix domain of resolvase y3214 PF01797 Transposase IS200 like y3215 PF00884 Sulfatase y3216 PF00455 DeoR C terminal sensor domain y3216 PF08220 DeoR-like helix-turn-helix domain y3217 PF08013 Tagatose 6 phosphate kinase y3218 PF01380 SIS domain y3219 PF03830 PTS system sorbose subfamily IIB component y3220 PF03609 PTS system sorbose-specific iic component y3221 PF03613 PTS system mannose/fructose/sorbose family IID component y3222 PF03610 PTS system fructose IIA component y3223 PF01979 Amidohydrolase family y3226 PF13186 Iron-sulfur cluster-binding domain y3226 PF04055 Radical SAM superfamily y3227 PF00884 Sulfatase y3229 PF01116 Fructose-bisphosphate aldolase class-II y3231 PF00356 Bacterial regulatory proteins, lacI family y3232 PF07690 Major Facilitator Superfamily y3233 PF16338 Domain of unknown function (DUF4968) y3233 PF01055 Glycosyl hydrolases family 31 y3233 PF13802 Galactose mutarotase-like y3233 PF17137 Domain of unknown function (DUF5110) y3234 PF00356 Bacterial regulatory proteins, lacI family y3235 PF02264 LamB porin y3236 PF02378 Phosphotransferase system, EIIC y3236 PF00367 phosphotransferase system, EIIB y3237 PF08532 Beta-galactosidase trimerisation domain y3237 PF08533 Beta-galactosidase C-terminal domain y3237 PF02449 Beta-galactosidase y3238 PF07745 Glycosyl hydrolase family 53 y3239 PF00528 Binding-protein-dependent transport system inner membrane component y3240 PF00528 Binding-protein-dependent transport system inner membrane component y3241 PF13416 Bacterial extracellular solute-binding protein y3242 PF00005 ABC transporter y3242 PF17912 MalK OB fold domain y3243 PF00005 ABC transporter y3244 PF02653 Branched-chain amino acid transport system / permease component y3245 PF13407 Periplasmic binding protein domain y3247 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family y3249 PF03551 Transcriptional regulator PadR-like family y3266 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA y3271 PF00589 Phage integrase family y3271 PF14659 Phage integrase, N-terminal SAM-like domain y3271 PF13356 Arm DNA-binding domain y3272 PF00152 tRNA synthetases class II (D, K and N) y3272 PF01336 OB-fold nucleic acid binding domain y3273 PF03462 PCRF domain y3273 PF00472 RF-1 domain y3274 PF17768 RecJ OB domain y3274 PF01368 DHH family y3274 PF02272 DHHA1 domain y3275 PF13098 Thioredoxin-like domain y3275 PF10411 Disulfide bond isomerase protein N-terminus y3276 PF02899 Phage integrase, N-terminal SAM-like domain y3276 PF00589 Phage integrase family y3277 PF00258 Flavodoxin y3278 PF06123 Inner membrane protein CreD y3279 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y3279 PF00672 HAMP domain y3279 PF00512 His Kinase A (phospho-acceptor) domain y3280 PF00072 Response regulator receiver domain y3280 PF00486 Transcriptional regulatory protein, C terminal y3281 PF07254 Membrane-bound toxin component of toxin-antitoxin system y3282 PF03937 Flavinator of succinate dehydrogenase y3283 PF01571 Aminomethyltransferase folate-binding domain y3285 PF03006 Haemolysin-III related y3288 PF05658 Head domain of trimeric autotransporter adhesin y3288 PF05662 Coiled stalk of trimeric autotransporter adhesin y3288 PF13018 Extended Signal Peptide of Type V secretion system y3288 PF03895 YadA-like membrane anchor domain y3292 PF02347 Glycine cleavage system P-protein y3293 PF01597 Glycine cleavage H-protein y3294 PF01571 Aminomethyltransferase folate-binding domain y3294 PF08669 Glycine cleavage T-protein C-terminal barrel domain y3295 PF01494 FAD binding domain y3296 PF01494 FAD binding domain y3297 PF05195 Aminopeptidase P, N-terminal domain y3297 PF00557 Metallopeptidase family M24 y3298 PF03695 Uncharacterised protein family (UPF0149) y3299 PF05164 Cell division protein ZapA y3300 PF01812 5-formyltetrahydrofolate cyclo-ligase family y3301 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain y3301 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain y3301 PF01842 ACT domain y3302 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) y3303 PF03466 LysR substrate binding domain y3303 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y3304 PF04402 Protein of unknown function (DUF541) y3305 PF01810 LysE type translocator y3306 PF00924 Mechanosensitive ion channel y3306 PF05552 Conserved TM helix y3307 PF01116 Fructose-bisphosphate aldolase class-II y3308 PF00162 Phosphoglycerate kinase y3309 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain y3309 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain y3310 PF02780 Transketolase, C-terminal domain y3310 PF00456 Transketolase, thiamine diphosphate binding domain y3310 PF02779 Transketolase, pyrimidine binding domain y3311 PF01435 Peptidase family M48 y3312 PF00355 Rieske [2Fe-2S] domain y3313 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain y3313 PF17810 Arginine decarboxylase helical bundle domain y3313 PF17944 Arginine decarboxylase C-terminal helical extension y3314 PF02773 S-adenosylmethionine synthetase, C-terminal domain y3314 PF02772 S-adenosylmethionine synthetase, central domain y3314 PF00438 S-adenosylmethionine synthetase, N-terminal domain y3315 PF10263 SprT-like family y3315 PF17283 SprT-like zinc ribbon domain y3316 PF04231 Endonuclease I y3320 PF04452 RNA methyltransferase y3321 PF02951 Prokaryotic glutathione synthetase, N-terminal domain y3321 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain y3322 PF02622 Uncharacterized ACR, COG1678 y3323 PF03652 Holliday junction resolvase y3324 PF00795 Carbon-nitrogen hydrolase y3325 PF04371 Porphyromonas-type peptidyl-arginine deiminase y3326 PF00437 Type II/IV secretion system protein y3327 PF01168 Alanine racemase, N-terminal domain y3328 PF14748 Pyrroline-5-carboxylate reductase dimerisation y3328 PF03807 NADP oxidoreductase coenzyme F420-dependent y3329 PF02325 YGGT family y3330 PF02594 Uncharacterised ACR, YggU family COG1872 y3331 PF01725 Ham1 family y3332 PF04055 Radical SAM superfamily y3332 PF06969 HemN C-terminal domain y3333 PF07634 RtxA repeat y3333 PF12146 Serine aminopeptidase, S33 y3333 PF11647 Membrane Localization Domain y3333 PF11713 Peptidase C80 family y3333 PF16671 Actin cross-linking domain y3334 PF11101 Protein of unknown function (DUF2884) y3335 PF11101 Protein of unknown function (DUF2884) y3336 PF04960 Glutaminase y3337 PF04320 Protein with unknown function (DUF469) y3338 PF02390 Putative methyltransferase y3339 PF00730 HhH-GPD superfamily base excision DNA repair protein y3339 PF10576 Iron-sulfur binding domain of endonuclease III y3339 PF00633 Helix-hairpin-helix motif y3339 PF14815 NUDIX domain y3340 PF04362 Bacterial Fe(2+) trafficking y3341 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain y3341 PF01464 Transglycosylase SLT domain y3343 PF07715 TonB-dependent Receptor Plug Domain y3344 PF02653 Branched-chain amino acid transport system / permease component y3345 PF00005 ABC transporter y3346 PF13407 Periplasmic binding protein domain y3347 PF01276 Orn/Lys/Arg decarboxylase, major domain y3347 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain y3347 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain y3350 PF03400 IS1 transposase y3351 PF12759 InsA C-terminal domain y3351 PF03811 InsA N-terminal domain y3355 PF03400 IS1 transposase y3357 PF03811 InsA N-terminal domain y3357 PF12759 InsA C-terminal domain y3362 PF10431 C-terminal, D2-small domain, of ClpB protein y3362 PF00004 ATPase family associated with various cellular activities (AAA) y3362 PF17871 AAA lid domain y3362 PF07724 AAA domain (Cdc48 subfamily) y3365 PF00691 OmpA family y3365 PF05736 OprF membrane domain y3373 PF02517 CPBP intramembrane metalloprotease y3374 PF00765 Autoinducer synthase y3375 PF00196 Bacterial regulatory proteins, luxR family y3375 PF03472 Autoinducer binding domain y3380 PF04183 IucA / IucC family y3380 PF06276 Ferric iron reductase FhuF-like transporter y3381 PF06276 Ferric iron reductase FhuF-like transporter y3381 PF04183 IucA / IucC family y3383 PF04183 IucA / IucC family y3383 PF06276 Ferric iron reductase FhuF-like transporter y3384 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) y3385 PF07715 TonB-dependent Receptor Plug Domain y3385 PF00593 TonB dependent receptor y3388 PF13333 Integrase core domain y3388 PF00665 Integrase core domain y3388 PF13276 HTH-like domain y3389 PF00990 Diguanylate cyclase, GGDEF domain y3389 PF03707 Bacterial signalling protein N terminal repeat y3389 PF00563 EAL domain y3389 PF13188 PAS domain y3392 PF00529 HlyD membrane-fusion protein of T1SS y3392 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion y3393 PF00873 AcrB/AcrD/AcrF family y3394 PF07906 ShET2 enterotoxin, N-terminal region y3396 PF03797 Autotransporter beta-domain y3397 PF14496 C-terminal novel E3 ligase, LRR-interacting y3397 PF12468 Type III secretion system leucine rich repeat protein y3399 PF12468 Type III secretion system leucine rich repeat protein y3399 PF14496 C-terminal novel E3 ligase, LRR-interacting y3399 PF12468 Type III secretion system leucine rich repeat protein y3399 PF14496 C-terminal novel E3 ligase, LRR-interacting y3400 PF14496 C-terminal novel E3 ligase, LRR-interacting y3400 PF12468 Type III secretion system leucine rich repeat protein y3402 PF03806 AbgT putative transporter family y3403 PF01546 Peptidase family M20/M25/M40 y3403 PF07687 Peptidase dimerisation domain y3404 PF07715 TonB-dependent Receptor Plug Domain y3404 PF00593 TonB dependent receptor y3406 PF00202 Aminotransferase class-III y3406 PF00501 AMP-binding enzyme y3406 PF13193 AMP-binding enzyme C-terminal domain y3406 PF00550 Phosphopantetheine attachment site y3406 PF00668 Condensation domain y3406 PF02801 Beta-ketoacyl synthase, C-terminal domain y3406 PF16197 Ketoacyl-synthetase C-terminal extension y3406 PF00109 Beta-ketoacyl synthase, N-terminal domain y3407 PF02796 Helix-turn-helix domain of resolvase y3407 PF00665 Integrase core domain y3408 PF01695 IstB-like ATP binding protein y3410 PF00550 Phosphopantetheine attachment site y3410 PF08242 Methyltransferase domain y3410 PF00668 Condensation domain y3410 PF00501 AMP-binding enzyme y3411 PF08242 Methyltransferase domain y3411 PF00668 Condensation domain y3411 PF00501 AMP-binding enzyme y3411 PF00550 Phosphopantetheine attachment site y3412 PF00501 AMP-binding enzyme y3412 PF13193 AMP-binding enzyme C-terminal domain y3412 PF00668 Condensation domain y3420 PF00975 Thioesterase domain y3422 PF04954 Siderophore-interacting protein y3422 PF08021 Siderophore-interacting FAD-binding domain y3422 PF00005 ABC transporter y3422 PF00664 ABC transporter transmembrane region y3423 PF00005 ABC transporter y3423 PF00664 ABC transporter transmembrane region y3426 PF02447 GntP family permease y3428 PF12951 Passenger-associated-transport-repeat y3429 PF12951 Passenger-associated-transport-repeat y3430 PF04717 Type VI secretion system, phage-baseplate injector y3432 PF05593 RHS Repeat y3432 PF03527 RHS protein y3435 PF00939 Sodium:sulfate symporter transmembrane region y3436 PF00356 Bacterial regulatory proteins, lacI family y3439 PF13276 HTH-like domain y3439 PF13333 Integrase core domain y3439 PF00665 Integrase core domain y3441 PF00669 Bacterial flagellin N-terminal helical region y3441 PF00700 Bacterial flagellin C-terminal helical region y3442 PF00486 Transcriptional regulatory protein, C terminal y3442 PF18500 CadC C-terminal domain 1 y3446 PF06429 Flagellar basal body rod FlgEFG protein C-terminal y3446 PF00460 Flagella basal body rod protein y3448 PF02119 Flagellar P-ring protein y3449 PF02107 Flagellar L-ring protein y3450 PF00460 Flagella basal body rod protein y3450 PF06429 Flagellar basal body rod FlgEFG protein C-terminal y3451 PF00460 Flagella basal body rod protein y3451 PF06429 Flagellar basal body rod FlgEFG protein C-terminal y3452 PF00460 Flagella basal body rod protein y3452 PF07559 Flagellar basal body protein FlaE y3452 PF06429 Flagellar basal body rod FlgEFG protein C-terminal y3453 PF13860 FlgD Ig-like domain y3453 PF13861 FlgD Tudor-like domain y3453 PF03963 Flagellar hook capping protein - N-terminal region y3455 PF00460 Flagella basal body rod protein y3455 PF06429 Flagellar basal body rod FlgEFG protein C-terminal y3456 PF00460 Flagella basal body rod protein y3457 PF13144 Chaperone for flagella basal body P-ring formation y3461 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain y3461 PF18269 T3SS EscN ATPase C-terminal domain y3464 PF08345 Flagellar M-ring protein C-terminal y3464 PF01514 Secretory protein of YscJ/FliF family y3465 PF02049 Flagellar hook-basal body complex protein FliE y3466 PF02954 Bacterial regulatory protein, Fis family y3466 PF00072 Response regulator receiver domain y3466 PF00158 Sigma-54 interaction domain y3468 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term y3469 PF00813 FliP family y3470 PF01313 Bacterial export proteins, family 3 y3471 PF01311 Bacterial export proteins, family 1 y3472 PF01312 FlhB HrpN YscU SpaS Family y3477 PF01497 Periplasmic binding protein y3478 PF00419 Fimbrial protein y3478 PF09222 Fimbrial adhesin F17-AG, lectin domain y3479 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain y3479 PF02753 Pili assembly chaperone PapD, C-terminal domain y3480 PF00577 Outer membrane usher protein y3480 PF13954 PapC N-terminal domain y3480 PF13953 PapC C-terminal domain y3481 PF01797 Transposase IS200 like y3484 PF13629 Pilus formation protein N terminal region y3484 PF00263 Bacterial type II and III secretion system protein y3484 PF04972 BON domain y3485 PF04972 BON domain y3485 PF13629 Pilus formation protein N terminal region y3485 PF00263 Bacterial type II and III secretion system protein y3487 PF00437 Type II/IV secretion system protein y3494 PF02472 Biopolymer transport protein ExbD/TolR y3495 PF01618 MotA/TolQ/ExbB proton channel family y3496 PF01053 Cys/Met metabolism PLP-dependent enzyme y3497 PF09335 SNARE associated Golgi protein y3498 PF06719 AraC-type transcriptional regulator N-terminus y3498 PF12833 Helix-turn-helix domain y3499 PF00465 Iron-containing alcohol dehydrogenase y3501 PF00248 Aldo/keto reductase family y3502 PF04055 Radical SAM superfamily y3502 PF11842 Domain of unknown function (DUF3362) y3502 PF08497 Radical SAM N-terminal y3503 PF08497 Radical SAM N-terminal y3503 PF04055 Radical SAM superfamily y3503 PF11842 Domain of unknown function (DUF3362) y3504 PF07732 Multicopper oxidase y3504 PF07731 Multicopper oxidase y3506 PF01553 Acyltransferase y3507 PF03989 DNA gyrase C-terminal domain, beta-propeller y3507 PF00521 DNA gyrase/topoisomerase IV, subunit A y3509 PF02525 Flavodoxin-like fold y3510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y3510 PF03466 LysR substrate binding domain y3511 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y3511 PF00204 DNA gyrase B y3511 PF00986 DNA gyrase B subunit, carboxyl terminus y3511 PF01751 Toprim domain y3512 PF05728 Uncharacterised protein family (UPF0227) y3513 PF00149 Calcineurin-like phosphoesterase y3514 PF06853 Protein of unknown function (DUF1249) y3515 PF00293 NUDIX domain y3516 PF02321 Outer membrane efflux protein y3517 PF06693 Protein of unknown function (DUF1190) y3518 PF03738 Glutathionylspermidine synthase preATP-grasp y3519 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase y3520 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase y3522 PF04380 Membrane fusogenic activity y3523 PF13520 Amino acid permease y3524 PF01467 Cytidylyltransferase-like y3524 PF00294 pfkB family carbohydrate kinase y3525 PF03710 Glutamate-ammonia ligase adenylyltransferase y3525 PF08335 GlnD PII-uridylyltransferase y3527 PF01928 CYTH domain y3528 PF08239 Bacterial SH3 domain y3529 PF01966 HD domain y3529 PF12627 Probable RNA and SrmB- binding site of polymerase A y3529 PF01743 Poly A polymerase head domain y3530 PF02673 Bacitracin resistance protein BacA y3531 PF02152 Dihydroneopterin aldolase y3532 PF02660 Glycerol-3-phosphate acyltransferase y3534 PF00814 Glycoprotease family y3535 PF01165 Ribosomal protein S21 y3536 PF10410 DnaB-helicase binding domain of primase y3536 PF08275 DNA primase catalytic core, N-terminal domain y3536 PF08278 DNA primase DnaG DnaB-binding y3536 PF01807 CHC2 zinc finger y3537 PF04545 Sigma-70, region 4 y3537 PF04539 Sigma-70 region 3 y3537 PF04542 Sigma-70 region 2 y3537 PF00140 Sigma-70 factor, region 1.2 y3537 PF03979 Sigma-70 factor, region 1.1 y3537 PF04546 Sigma-70, non-essential region y3547 PF03466 LysR substrate binding domain y3547 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y3551 PF01042 Endoribonuclease L-PSP y3558 PF00529 HlyD membrane-fusion protein of T1SS y3558 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion y3559 PF04632 Fusaric acid resistance protein family y3562 PF14310 Fibronectin type III-like domain y3562 PF00933 Glycosyl hydrolase family 3 N terminal domain y3562 PF01915 Glycosyl hydrolase family 3 C-terminal domain y3564 PF00528 Binding-protein-dependent transport system inner membrane component y3565 PF00528 Binding-protein-dependent transport system inner membrane component y3566 PF13416 Bacterial extracellular solute-binding protein y3567 PF00356 Bacterial regulatory proteins, lacI family y3568 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain y3569 PF03459 TOBE domain y3569 PF17912 MalK OB fold domain y3569 PF00005 ABC transporter y3574 PF13018 Extended Signal Peptide of Type V secretion system y3574 PF13332 Hemagglutinin repeat y3574 PF05860 haemagglutination activity domain y3574 PF04829 Pre-toxin domain with VENN motif y3575 PF13018 Extended Signal Peptide of Type V secretion system y3575 PF13332 Hemagglutinin repeat y3575 PF05860 haemagglutination activity domain y3575 PF04829 Pre-toxin domain with VENN motif y3577 PF13018 Extended Signal Peptide of Type V secretion system y3577 PF13332 Hemagglutinin repeat y3577 PF05860 haemagglutination activity domain y3577 PF04829 Pre-toxin domain with VENN motif y3578 PF13332 Hemagglutinin repeat y3578 PF05860 haemagglutination activity domain y3578 PF04829 Pre-toxin domain with VENN motif y3578 PF13018 Extended Signal Peptide of Type V secretion system y3579 PF13332 Hemagglutinin repeat y3579 PF13018 Extended Signal Peptide of Type V secretion system y3579 PF05860 haemagglutination activity domain y3579 PF04829 Pre-toxin domain with VENN motif y3580 PF08479 POTRA domain, ShlB-type y3580 PF17287 POTRA domain y3580 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB y3581 PF00092 von Willebrand factor type A domain y3583 PF02342 TerD domain y3585 PF00092 von Willebrand factor type A domain y3588 PF03729 Short repeat of unknown function (DUF308) y3589 PF07992 Pyridine nucleotide-disulphide oxidoreductase y3589 PF00724 NADH:flavin oxidoreductase / NADH oxidase family y3590 PF05175 Methyltransferase small domain y3591 PF03797 Autotransporter beta-domain y3592 PF01863 Protein of unknown function DUF45 y3594 PF01408 Oxidoreductase family, NAD-binding Rossmann fold y3595 PF00375 Sodium:dicarboxylate symporter family y3596 PF01797 Transposase IS200 like y3597 PF10688 Bacterial inner membrane protein y3598 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus y3598 PF08666 SAF domain y3599 PF01232 Mannitol dehydrogenase Rossmann domain y3599 PF08125 Mannitol dehydrogenase C-terminal domain y3600 PF02614 Glucuronate isomerase y3601 PF07690 Major Facilitator Superfamily y3602 PF07729 FCD domain y3602 PF00392 Bacterial regulatory proteins, gntR family y3605 PF09335 SNARE associated Golgi protein y3606 PF13721 SecD export protein N-terminal TM region y3609 PF05957 Bacterial protein of unknown function (DUF883) y3610 PF07332 Putative Actinobacterial Holin-X, holin superfamily III y3612 PF07681 DoxX y3613 PF13409 Glutathione S-transferase, N-terminal domain y3614 PF00665 Integrase core domain y3614 PF02796 Helix-turn-helix domain of resolvase y3615 PF01695 IstB-like ATP binding protein y3616 PF00293 NUDIX domain y3617 PF01043 SecA preprotein cross-linking domain y3617 PF07516 SecA Wing and Scaffold domain y3617 PF07517 SecA DEAD-like domain y3617 PF02810 SEC-C motif y3618 PF06558 Secretion monitor precursor protein (SecM) y3620 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase y3621 PF12327 FtsZ family, C-terminal domain y3621 PF00091 Tubulin/FtsZ family, GTPase domain y3622 PF02491 SHS2 domain inserted in FTSA y3623 PF08478 POTRA domain, FtsQ-type y3623 PF03799 Cell division protein FtsQ y3624 PF07478 D-ala D-ala ligase C-terminus y3624 PF01820 D-ala D-ala ligase N-terminus y3625 PF01225 Mur ligase family, catalytic domain y3625 PF02875 Mur ligase family, glutamate ligase domain y3625 PF08245 Mur ligase middle domain y3626 PF04101 Glycosyltransferase family 28 C-terminal domain y3626 PF03033 Glycosyltransferase family 28 N-terminal domain y3627 PF01098 Cell cycle protein y3628 PF02875 Mur ligase family, glutamate ligase domain y3628 PF08245 Mur ligase middle domain y3629 PF00953 Glycosyl transferase family 4 y3629 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 y3630 PF08245 Mur ligase middle domain y3630 PF01225 Mur ligase family, catalytic domain y3630 PF02875 Mur ligase family, glutamate ligase domain y3631 PF01225 Mur ligase family, catalytic domain y3631 PF02875 Mur ligase family, glutamate ligase domain y3631 PF08245 Mur ligase middle domain y3632 PF00905 Penicillin binding protein transpeptidase domain y3632 PF03717 Penicillin-binding Protein dimerisation domain y3633 PF04999 Cell division protein FtsL y3634 PF01795 MraW methylase family y3635 PF02381 MraZ protein, putative antitoxin-like y3636 PF06610 L-alanine exporter y3637 PF00356 Bacterial regulatory proteins, lacI family y3637 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family y3638 PF01797 Transposase IS200 like y3639 PF10369 Small subunit of acetolactate synthase y3640 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain y3640 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain y3640 PF00205 Thiamine pyrophosphate enzyme, central domain y3641 PF00501 AMP-binding enzyme y3642 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y3642 PF03466 LysR substrate binding domain y3644 PF01797 Transposase IS200 like y3645 PF08502 LeuA allosteric (dimerisation) domain y3645 PF00682 HMGL-like y3646 PF00180 Isocitrate/isopropylmalate dehydrogenase y3647 PF00330 Aconitase family (aconitate hydratase) y3648 PF00694 Aconitase C-terminal domain y3649 PF07690 Major Facilitator Superfamily y3650 PF12793 Sugar transport-related sRNA regulator N-term y3650 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle y3652 PF00528 Binding-protein-dependent transport system inner membrane component y3653 PF00005 ABC transporter y3654 PF09335 SNARE associated Golgi protein y3655 PF00136 DNA polymerase family B y3655 PF03104 DNA polymerase family B, exonuclease domain y3656 PF00176 SNF2 family N-terminal domain y3656 PF00271 Helicase conserved C-terminal domain y3656 PF18339 RapA N-terminal Tudor like domain 1 y3656 PF18337 RapA N-terminal Tudor like domain y3656 PF12137 RNA polymerase recycling family C-terminal y3659 PF00691 OmpA family y3659 PF05736 OprF membrane domain y3668 PF04717 Type VI secretion system, phage-baseplate injector y3669 PF07724 AAA domain (Cdc48 subfamily) y3669 PF10431 C-terminal, D2-small domain, of ClpB protein y3669 PF00004 ATPase family associated with various cellular activities (AAA) y3669 PF17871 AAA lid domain y3678 PF00849 RNA pseudouridylate synthase y3679 PF05099 Tellurite resistance protein TerB y3679 PF00226 DnaJ domain y3680 PF03968 OstA-like protein y3680 PF04453 LPS transport system D y3681 PF00639 PPIC-type PPIASE domain y3681 PF09312 SurA N-terminal domain y3682 PF04166 Pyridoxal phosphate biosynthetic protein PdxA y3683 PF00398 Ribosomal RNA adenine dimethylase y3684 PF04379 ApaG domain y3685 PF00149 Calcineurin-like phosphoesterase y3687 PF01797 Transposase IS200 like y3688 PF00186 Dihydrofolate reductase y3689 PF12821 Threonine/Serine exporter, ThrE y3690 PF06738 Putative threonine/serine exporter y3691 PF01810 LysE type translocator y3692 PF02142 MGS-like domain y3692 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain y3692 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain y3693 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain y3693 PF00117 Glutamine amidotransferase class-I y3694 PF01113 Dihydrodipicolinate reductase, N-terminus y3694 PF05173 Dihydrodipicolinate reductase, C-terminus y3695 PF01797 Transposase IS200 like y3697 PF02401 LytB protein y3698 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase y3699 PF01252 Signal peptidase (SPase) II y3700 PF08264 Anticodon-binding domain of tRNA y3700 PF06827 Zinc finger found in FPG and IleRS y3700 PF00133 tRNA synthetases class I (I, L, M and V) y3701 PF06574 FAD synthetase y3701 PF01687 Riboflavin kinase y3702 PF01649 Ribosomal protein S20 y3703 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family y3703 PF03466 LysR substrate binding domain y3704 PF06965 Na+/H+ antiporter 1 y3705 PF00684 DnaJ central domain y3705 PF00226 DnaJ domain y3705 PF01556 DnaJ C terminal domain y3706 PF00012 Hsp70 protein y3707 PF01184 GPR1/FUN34/yaaH family y3709 PF07690 Major Facilitator Superfamily y3710 PF00994 Probable molybdopterin binding domain y3712 PF00923 Transaldolase/Fructose-6-phosphate aldolase y3714 PF03883 Peroxide stress protein YaaA y3715 PF14821 Threonine synthase N terminus y3715 PF00291 Pyridoxal-phosphate dependent enzyme y3716 PF00288 GHMP kinases N terminal domain y3716 PF08544 GHMP kinases C terminal y3718 PF00742 Homoserine dehydrogenase y3718 PF01842 ACT domain y3718 PF03447 Homoserine dehydrogenase, NAD binding domain y3718 PF13840 ACT domain y3718 PF00696 Amino acid kinase family y3719 PF08254 Threonine leader peptide y3721 PF00072 Response regulator receiver domain y3721 PF00486 Transcriptional regulatory protein, C terminal y3722 PF05981 CreA protein y3723 PF06445 GyrI-like small molecule binding domain y3723 PF12833 Helix-turn-helix domain y3724 PF00300 Histidine phosphatase superfamily (branch 1) y3725 PF01931 Protein of unknown function DUF84 y3726 PF01371 Trp repressor protein y3727 PF01464 Transglycosylase SLT domain y3727 PF14718 Soluble lytic murein transglycosylase L domain y3728 PF00690 Cation transporter/ATPase, N-terminus y3728 PF00689 Cation transporting ATPase, C-terminus y3730 PF00990 Diguanylate cyclase, GGDEF domain y3730 PF17152 Periplasmic sensor domain y3731 PF00691 OmpA family y3732 PF02796 Helix-turn-helix domain of resolvase y3732 PF00665 Integrase core domain y3733 PF01695 IstB-like ATP binding protein y3737 PF18073 Rubredoxin metal binding domain y3738 PF18429 Domain of unknown function (DUF5609) y3739 PF10144 Bacterial virulence factor haemolysin y3740 PF01048 Phosphorylase superfamily y3741 PF01676 Metalloenzyme superfamily y3743 PF01791 DeoC/LacD family aldolase y3744 PF07670 Nucleoside recognition y3744 PF01773 Na+ dependent nucleoside transporter N-terminus y3744 PF07662 Na+ dependent nucleoside transporter C-terminus y3745 PF01026 TatD related DNase y3746 PF01734 Patatin-like phospholipase y3747 PF07043 Protein of unknown function (DUF1328) y3748 PF04972 BON domain y3749 PF16658 Class II release factor RF3, C-terminal domain y3749 PF03144 Elongation factor Tu domain 2 y3749 PF00009 Elongation factor Tu GTP binding domain y3751 PF00583 Acetyltransferase (GNAT) family y3752 PF03603 DNA polymerase III psi subunit y3753 PF05175 Methyltransferase small domain y3753 PF08468 Methyltransferase small domain N-terminal y3754 PF07256 Protein of unknown function (DUF1435) y3756 PF00990 Diguanylate cyclase, GGDEF domain y3757 PF01095 Pectinesterase y3759 PF00873 AcrB/AcrD/AcrF family y3760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion y3763 PF01075 Glycosyltransferase family 9 (heptosyltransferase) y3764 PF00370 FGGY family of carbohydrate kinases, N-terminal domain y3764 PF02782 FGGY family of carbohydrate kinases, C-terminal domain y3765 PF04198 Putative sugar-binding domain y3765 PF00325 Bacterial regulatory proteins, crp family y3766 PF00325 Bacterial regulatory proteins, crp family y3766 PF04198 Putative sugar-binding domain y3769 PF00005 ABC transporter y3770 PF02653 Branched-chain amino acid transport system / permease component y3771 PF02653 Branched-chain amino acid transport system / permease component y3772 PF13407 Periplasmic binding protein domain y3773 PF01791 DeoC/LacD family aldolase y3774 PF03992 Antibiotic biosynthesis monooxygenase y3775 PF10696 Protein of unknown function (DUF2501) y3776 PF02896 PEP-utilising enzyme, TIM barrel domain y3776 PF05524 PEP-utilising enzyme, N-terminal y3776 PF00391 PEP-utilising enzyme, mobile domain y3776 PF00381 PTS HPr component phosphorylation site y3776 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 y3778 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit y3780 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit y3781 PF12833 Helix-turn-helix domain y3783 PF05987 Bacterial protein of unknown function (DUF898) y3787 PF00665 Integrase core domain y3792 PF01555 DNA methylase y3793 PF01527 Transposase y3795 PF13276 HTH-like domain y3795 PF13683 Integrase core domain y3797 PF07728 AAA domain (dynein-related subfamily) y3797 PF12102 Domain of unknown function (DUF3578) y3798 PF02796 Helix-turn-helix domain of resolvase y3798 PF00665 Integrase core domain y3799 PF01695 IstB-like ATP binding protein y3800 PF02580 D-Tyr-tRNA(Tyr) deacylase y3801 PF03631 Virulence factor BrkB y3802 PF13419 Haloacid dehalogenase-like hydrolase y3804 PF00120 Glutamine synthetase, catalytic domain y3804 PF03951 Glutamine synthetase, beta-Grasp domain y3805 PF00512 His Kinase A (phospho-acceptor) domain y3805 PF00989 PAS fold y3805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y3806 PF02954 Bacterial regulatory protein, Fis family y3806 PF00158 Sigma-54 interaction domain y3806 PF00072 Response regulator receiver domain y3807 PF04055 Radical SAM superfamily y3807 PF06969 HemN C-terminal domain y3808 PF04220 Der GTPase activator (YihI) y3809 PF01926 50S ribosome-binding GTPase y3810 PF01797 Transposase IS200 like y3811 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain y3811 PF00476 DNA polymerase family A y3811 PF01612 3'-5' exonuclease y3811 PF01367 5'-3' exonuclease, C-terminal SAM fold y3812 PF01323 DSBA-like thioredoxin domain y3813 PF01636 Phosphotransferase enzyme family y3814 PF06288 Protein of unknown function (DUF1040) y3815 PF12804 MobA-like NTP transferase domain y3816 PF03205 Molybdopterin guanine dinucleotide synthesis protein B y3817 PF00872 Transposase, Mutator family y3818 PF00665 Integrase core domain y3818 PF02796 Helix-turn-helix domain of resolvase y3819 PF01695 IstB-like ATP binding protein y3820 PF07730 Histidine kinase y3820 PF05231 MASE1 y3820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y3821 PF07690 Major Facilitator Superfamily y3823 PF04829 Pre-toxin domain with VENN motif y3823 PF05860 haemagglutination activity domain y3823 PF13332 Hemagglutinin repeat y3823 PF05594 Haemagluttinin repeat y3824 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB y3824 PF08479 POTRA domain, ShlB-type y3824 PF17287 POTRA domain y3825 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle y3826 PF00528 Binding-protein-dependent transport system inner membrane component y3827 PF00528 Binding-protein-dependent transport system inner membrane component y3828 PF12911 N-terminal TM domain of oligopeptide transport permease C y3828 PF00528 Binding-protein-dependent transport system inner membrane component y3829 PF08352 Oligopeptide/dipeptide transporter, C-terminal region y3829 PF00005 ABC transporter y3830 PF08352 Oligopeptide/dipeptide transporter, C-terminal region y3830 PF00005 ABC transporter y3831 PF01270 Glycosyl hydrolases family 8 y3832 PF00672 HAMP domain y3832 PF17154 Gammaproteobacterial periplasmic sensor domain y3832 PF00563 EAL domain y3832 PF00990 Diguanylate cyclase, GGDEF domain y3833 PF06178 Oligogalacturonate-specific porin protein (KdgM) y3834 PF06917 Periplasmic pectate lyase y3836 PF00375 Sodium:dicarboxylate symporter family y3837 PF00675 Insulinase (Peptidase family M16) y3837 PF05193 Peptidase M16 inactive domain y3838 PF00294 pfkB family carbohydrate kinase y3839 PF01361 Tautomerase enzyme y3841 PF00563 EAL domain y3842 PF05170 AsmA family y3843 PF02611 CDP-diacylglycerol pyrophosphatase y3844 PF03631 Virulence factor BrkB y3849 PF02595 Glycerate kinase family y3850 PF02447 GntP family permease y3851 PF05651 Putative sugar diacid recognition y3851 PF17853 GGDEF-like domain y3851 PF13556 PucR C-terminal helix-turn-helix domain y3852 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain y3852 PF07992 Pyridine nucleotide-disulphide oxidoreductase y3853 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ y3855 PF01432 Peptidase family M3 y3856 PF04445 Putative SAM-dependent methyltransferase y3857 PF08548 Peptidase M10 serralysin C terminal y3857 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) y3857 PF00413 Matrixin y3858 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain y3858 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase y3859 PF00582 Universal stress protein family y3860 PF10625 Universal stress protein B (UspB) y3861 PF01797 Transposase IS200 like y3862 PF01384 Phosphate transporter family y3864 PF00072 Response regulator receiver domain y3864 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y3864 PF08448 PAS fold y3864 PF00512 His Kinase A (phospho-acceptor) domain y3864 PF13188 PAS domain y3865 PF00005 ABC transporter y3866 PF02653 Branched-chain amino acid transport system / permease component y3867 PF13407 Periplasmic binding protein domain y3869 PF01116 Fructose-bisphosphate aldolase class-II y3871 PF00072 Response regulator receiver domain y3871 PF00486 Transcriptional regulatory protein, C terminal y3872 PF17954 Quercetinase C-terminal cupin domain y3872 PF02678 Pirin y3873 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family y3873 PF00356 Bacterial regulatory proteins, lacI family y3875 PF02447 GntP family permease y3876 PF01202 Shikimate kinase y3879 PF01914 MarC family integral membrane protein y3880 PF02774 Semialdehyde dehydrogenase, dimerisation domain y3880 PF01118 Semialdehyde dehydrogenase, NAD binding domain y3884 PF09134 Invasin, domain 3 y3884 PF07979 Intimin C-type lectin domain y3884 PF11924 Inverse autotransporter, beta-domain y3884 PF02369 Bacterial Ig-like domain (group 1) y3885 PF06580 Histidine kinase y3885 PF07694 5TMR of 5TMR-LYT y3886 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) y3886 PF02806 Alpha amylase, C-terminal all-beta domain y3886 PF00128 Alpha amylase, catalytic domain y3887 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) y3887 PF18390 Glycogen debranching enzyme C-terminal domain y3887 PF00128 Alpha amylase, catalytic domain y3888 PF00483 Nucleotidyl transferase y3889 PF08323 Starch synthase catalytic domain y3889 PF00534 Glycosyl transferases group 1 y3890 PF00343 Carbohydrate phosphorylase y3891 PF01266 FAD dependent oxidoreductase y3891 PF16901 C-terminal domain of alpha-glycerophosphate oxidase y3895 PF00665 Integrase core domain y3895 PF13333 Integrase core domain y3895 PF13276 HTH-like domain y3897 PF00455 DeoR C terminal sensor domain y3897 PF08220 DeoR-like helix-turn-helix domain y3898 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease y3898 PF01694 Rhomboid family y3899 PF00581 Rhodanese-like domain y3900 PF17874 MalT-like TPR region y3900 PF00196 Bacterial regulatory proteins, luxR family y3902 PF02446 4-alpha-glucanotransferase y3903 PF01521 Iron-sulphur cluster biosynthesis y3903 PF01106 NifU-like domain y3906 PF00156 Phosphoribosyl transferase domain y3907 PF00561 alpha/beta hydrolase fold y3908 PF00561 alpha/beta hydrolase fold y3909 PF07338 Protein of unknown function (DUF1471) y3910 PF09012 FeoC like transcriptional regulator y3911 PF07664 Ferrous iron transport protein B C terminus y3911 PF02421 Ferrous iron transport protein B y3911 PF07670 Nucleoside recognition y3911 PF17910 FeoB cytosolic helical domain y3912 PF04023 FeoA domain y3913 PF16921 Tex protein YqgF-like domain y3913 PF17674 HHH domain y3913 PF09371 Tex-like protein N-terminal domain y3913 PF00575 S1 RNA binding domain y3915 PF03449 Transcription elongation factor, N-terminal y3915 PF01272 Transcription elongation factor, GreA/GreB, C-term y3916 PF00072 Response regulator receiver domain y3916 PF00486 Transcriptional regulatory protein, C terminal y3917 PF00672 HAMP domain y3917 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y3917 PF00512 His Kinase A (phospho-acceptor) domain y3918 PF01293 Phosphoenolpyruvate carboxykinase y3919 PF01430 Hsp33 protein y3920 PF01479 S4 domain y3921 PF13419 Haloacid dehalogenase-like hydrolase y3922 PF07095 Intracellular growth attenuator protein IgaA y3923 PF00293 NUDIX domain y3924 PF00905 Penicillin binding protein transpeptidase domain y3924 PF17092 Penicillin-binding protein OB-like domain y3924 PF00912 Transglycosylase y3932 PF00263 Bacterial type II and III secretion system protein y3932 PF03958 Bacterial type II/III secretion system short domain y3933 PF01202 Shikimate kinase y3934 PF01761 3-dehydroquinate synthase y3936 PF05036 Sporulation related domain y3937 PF02086 D12 class N6 adenine-specific DNA methyltransferase y3938 PF00834 Ribulose-phosphate 3 epimerase family y3939 PF13419 Haloacid dehalogenase-like hydrolase y3940 PF00579 tRNA synthetases class I (W and Y) y3941 PF14824 Sirohaem biosynthesis protein central y3941 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases y3941 PF10414 Sirohaem synthase dimerisation region y3942 PF01226 Formate/nitrite transporter y3944 PF13806 Rieske-like [2Fe-2S] domain y3945 PF01077 Nitrite and sulphite reductase 4Fe-4S domain y3945 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain y3945 PF04324 BFD-like [2Fe-2S] binding domain y3945 PF07992 Pyridine nucleotide-disulphide oxidoreductase y3945 PF18267 Rubredoxin NAD+ reductase C-terminal domain y3946 PF07969 Amidohydrolase family y3947 PF07690 Major Facilitator Superfamily y3949 PF00356 Bacterial regulatory proteins, lacI family y3950 PF11975 Family 4 glycosyl hydrolase C-terminal domain y3950 PF02056 Family 4 glycosyl hydrolase y3951 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD y3952 PF05872 Bacterial protein of unknown function (DUF853) y3953 PF00117 Glutamine amidotransferase class-I y3954 PF00202 Aminotransferase class-III y3955 PF12805 FUSC-like inner membrane protein yccS y3956 PF13545 Crp-like helix-turn-helix domain y3956 PF00027 Cyclic nucleotide-binding domain y3957 PF02566 OsmC-like protein y3959 PF00485 Phosphoribulokinase / Uridine kinase family y3960 PF06794 Uncharacterised protein family (UPF0270) y3961 PF00561 alpha/beta hydrolase fold y3962 PF01810 LysE type translocator y3963 PF04069 Substrate binding domain of ABC-type glycine betaine transport system y3964 PF00005 ABC transporter y3965 PF00528 Binding-protein-dependent transport system inner membrane component y3966 PF02668 Taurine catabolism dioxygenase TauD, TfdA family y3968 PF00535 Glycosyl transferase family 2 y3969 PF12848 ABC transporter y3969 PF00005 ABC transporter y3970 PF00005 ABC transporter y3970 PF12848 ABC transporter y3971 PF02525 Flavodoxin-like fold y3972 PF02254 TrkA-N domain y3972 PF00999 Sodium/hydrogen exchanger family y3973 PF09526 Probable metal-binding protein (DUF2387) y3975 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase y3976 PF04102 SlyX y3977 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase y3977 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase y3978 PF08348 YheO-like PAS domain y3978 PF13309 HTH domain y3979 PF02635 DsrE/DsrF-like family y3980 PF02635 DsrE/DsrF-like family y3981 PF04077 DsrH like protein y3983 PF00164 Ribosomal protein S12/S23 y3984 PF00177 Ribosomal protein S7p/S5e y3985 PF00679 Elongation factor G C-terminus y3985 PF03144 Elongation factor Tu domain 2 y3985 PF00009 Elongation factor Tu GTP binding domain y3985 PF14492 Elongation Factor G, domain II y3985 PF03764 Elongation factor G, domain IV y3986 PF03143 Elongation factor Tu C-terminal domain y3986 PF03144 Elongation factor Tu domain 2 y3986 PF00009 Elongation factor Tu GTP binding domain y3987 PF01797 Transposase IS200 like y3988 PF00210 Ferritin-like domain y3989 PF00338 Ribosomal protein S10p/S20e y3990 PF00297 Ribosomal protein L3 y3991 PF00573 Ribosomal protein L4/L1 family y3992 PF00276 Ribosomal protein L23 y3993 PF03947 Ribosomal Proteins L2, C-terminal domain y3993 PF00181 Ribosomal Proteins L2, RNA binding domain y3994 PF00237 Ribosomal protein L22p/L17e y3995 PF00189 Ribosomal protein S3, C-terminal domain y3995 PF07650 KH domain y3996 PF00252 Ribosomal protein L16p/L10e y3998 PF00831 Ribosomal L29 protein y3999 PF00238 Ribosomal protein L14p/L23e y4000 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 y4000 PF00467 KOW motif y4001 PF00281 Ribosomal protein L5 y4001 PF00673 ribosomal L5P family C-terminus y4002 PF00253 Ribosomal protein S14p/S29e y4003 PF00410 Ribosomal protein S8 y4004 PF00347 Ribosomal protein L6 y4006 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast y4007 PF03719 Ribosomal protein S5, C-terminal domain y4007 PF00333 Ribosomal protein S5, N-terminal domain y4008 PF00327 Ribosomal protein L30p/L7e y4009 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A y4010 PF00344 SecY translocase y4012 PF00416 Ribosomal protein S13/S18 y4013 PF00411 Ribosomal protein S11 y4014 PF01479 S4 domain y4014 PF00163 Ribosomal protein S4/S9 N-terminal domain y4015 PF01000 RNA polymerase Rpb3/RpoA insert domain y4015 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain y4015 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain y4016 PF01196 Ribosomal protein L17 y4017 PF13411 MerR HTH family regulatory protein y4018 PF03889 Alternative ribosome-rescue factor A y4019 PF01741 Large-conductance mechanosensitive channel, MscL y4020 PF02080 TrkA-C domain y4020 PF02254 TrkA-N domain y4021 PF01189 16S rRNA methyltransferase RsmB/F y4021 PF01029 NusB family y4022 PF00551 Formyl transferase y4022 PF02911 Formyl transferase, C-terminal domain y4023 PF01327 Polypeptide deformylase y4024 PF02481 DNA recombination-mediator protein A y4024 PF17782 DprA winged helix domain y4025 PF04361 Protein of unknown function (DUF494) y4026 PF01396 Topoisomerase DNA binding C4 zinc finger y4027 PF01300 Telomere recombination y4028 PF01488 Shikimate / quinate 5-dehydrogenase y4028 PF18317 Shikimate 5'-dehydrogenase C-terminal domain y4028 PF08501 Shikimate dehydrogenase substrate binding domain y4029 PF00132 Bacterial transferase hexapeptide (six repeats) y4030 PF01695 IstB-like ATP binding protein y4031 PF02796 Helix-turn-helix domain of resolvase y4031 PF00665 Integrase core domain y4032 PF05231 MASE1 y4032 PF07730 Histidine kinase y4032 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y4033 PF00072 Response regulator receiver domain y4033 PF00196 Bacterial regulatory proteins, luxR family y4034 PF08019 Phosphoethanolamine transferase EptA/EptB y4034 PF00884 Sulfatase y4035 PF12146 Serine aminopeptidase, S33 y4036 PF00324 Amino acid permease y4037 PF00221 Aromatic amino acid lyase y4038 PF17391 Urocanase N-terminal domain y4038 PF17392 Urocanase C-terminal domain y4038 PF01175 Urocanase Rossmann-like domain y4039 PF00291 Pyridoxal-phosphate dependent enzyme y4040 PF00156 Phosphoribosyl transferase domain y4043 PF01497 Periplasmic binding protein y4044 PF01032 FecCD transport family y4045 PF01032 FecCD transport family y4046 PF00005 ABC transporter y4050 PF13737 Transposase DDE domain y4052 PF14659 Phage integrase, N-terminal SAM-like domain y4052 PF13356 Arm DNA-binding domain y4052 PF00589 Phage integrase family y4053 PF12833 Helix-turn-helix domain y4054 PF02653 Branched-chain amino acid transport system / permease component y4055 PF00005 ABC transporter y4056 PF13407 Periplasmic binding protein domain y4058 PF02782 FGGY family of carbohydrate kinases, C-terminal domain y4058 PF00370 FGGY family of carbohydrate kinases, N-terminal domain y4060 PF02753 Pili assembly chaperone PapD, C-terminal domain y4060 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain y4061 PF13953 PapC C-terminal domain y4061 PF00577 Outer membrane usher protein y4061 PF13954 PapC N-terminal domain y4062 PF13953 PapC C-terminal domain y4062 PF00577 Outer membrane usher protein y4062 PF13954 PapC N-terminal domain y4063 PF00419 Fimbrial protein y4064 PF01757 Acyltransferase family y4066 PF13333 Integrase core domain y4066 PF00665 Integrase core domain y4066 PF13276 HTH-like domain y4067 PF07690 Major Facilitator Superfamily y4071 PF01526 Tn3 transposase DDE domain y4071 PF13700 Domain of unknown function (DUF4158) y4073 PF09107 Elongation factor SelB, winged helix y4073 PF09106 Elongation factor SelB, winged helix y4073 PF00009 Elongation factor Tu GTP binding domain y4073 PF03144 Elongation factor Tu domain 2 y4074 PF03841 L-seryl-tRNA selenium transferase y4074 PF12390 Selenocysteine synthase N terminal y4075 PF04216 Protein involved in formate dehydrogenase formation y4076 PF01292 Prokaryotic cytochrome b561 y4077 PF13247 4Fe-4S dicluster domain y4077 PF09163 Formate dehydrogenase N, transmembrane y4079 PF02634 FdhD/NarQ family y4080 PF02777 Iron/manganese superoxide dismutases, C-terminal domain y4080 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain y4081 PF00672 HAMP domain y4081 PF02203 Tar ligand binding domain homologue y4081 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain y4084 PF10928 Protein of unknown function (DUF2810) y4085 PF05068 Mannitol repressor y4086 PF08125 Mannitol dehydrogenase C-terminal domain y4086 PF01232 Mannitol dehydrogenase Rossmann domain y4087 PF02378 Phosphotransferase system, EIIC y4087 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 y4087 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit y4088 PF11254 Protein of unknown function (DUF3053) y4089 PF02092 Glycyl-tRNA synthetase beta subunit y4089 PF05746 DALR anticodon binding domain y4090 PF02091 Glycyl-tRNA synthetase alpha subunit y4091 PF03352 Methyladenine glycosylase y4093 PF00691 OmpA family y4093 PF13488 Glycine zipper y4096 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain y4096 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain y4097 PF00128 Alpha amylase, catalytic domain y4099 PF00155 Aminotransferase class I and II y4100 PF06826 Predicted Permease Membrane Region y4100 PF02080 TrkA-C domain y4101 PF00011 Hsp20/alpha crystallin family y4102 PF00011 Hsp20/alpha crystallin family y4103 PF07119 Protein of unknown function (DUF1375) y4105 PF00291 Pyridoxal-phosphate dependent enzyme y4105 PF13291 ACT domain y4106 PF02423 Ornithine cyclodeaminase/mu-crystallin family y4108 PF13333 Integrase core domain y4108 PF00665 Integrase core domain y4108 PF13276 HTH-like domain y4110 PF00204 DNA gyrase B y4110 PF00986 DNA gyrase B subunit, carboxyl terminus y4110 PF18053 DNA gyrase B subunit insert domain y4110 PF01751 Toprim domain y4110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase y4111 PF02463 RecF/RecN/SMC N terminal domain y4112 PF02768 DNA polymerase III beta subunit, C-terminal domain y4112 PF00712 DNA polymerase III beta subunit, N-terminal domain y4112 PF02767 DNA polymerase III beta subunit, central domain y4113 PF00308 Bacterial dnaA protein y4113 PF08299 Bacterial dnaA protein helix-turn-helix y4113 PF11638 DnaA N-terminal domain y4114 PF00468 Ribosomal protein L34 y4115 PF00825 Ribonuclease P y4117 PF02096 60Kd inner membrane protein y4117 PF14849 YidC periplasmic domain y4118 PF10396 GTP-binding protein TrmE N-terminus y4118 PF12631 MnmE helical domain y4118 PF01926 50S ribosome-binding GTPase y4119 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase y4119 PF12241 Trans-2-enoyl-CoA reductase catalytic region y4119 PF07055 Enoyl reductase FAD binding domain y4121 PF00860 Permease family y4122 PF13419 Haloacid dehalogenase-like hydrolase y4123 PF00528 Binding-protein-dependent transport system inner membrane component y4124 PF00528 Binding-protein-dependent transport system inner membrane component y4125 PF00497 Bacterial extracellular solute-binding proteins, family 3 y4127 PF01895 PhoU domain y4128 PF00005 ABC transporter y4129 PF00528 Binding-protein-dependent transport system inner membrane component y4130 PF00528 Binding-protein-dependent transport system inner membrane component y4131 PF12849 PBP superfamily domain y4132 PF01380 SIS domain y4133 PF12804 MobA-like NTP transferase domain y4133 PF00132 Bacterial transferase hexapeptide (six repeats) y4134 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain y4134 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain y4135 PF02874 ATP synthase alpha/beta family, beta-barrel domain y4135 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain y4136 PF00231 ATP synthase y4137 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain y4137 PF00306 ATP synthase alpha/beta chain, C terminal domain y4137 PF02874 ATP synthase alpha/beta family, beta-barrel domain y4138 PF00213 ATP synthase delta (OSCP) subunit y4139 PF00430 ATP synthase B/B' CF(0) y4140 PF00137 ATP synthase subunit C y4141 PF00119 ATP synthase A chain y4142 PF03899 ATP synthase I chain y4143 PF02527 rRNA small subunit methyltransferase G y4144 PF01134 Glucose inhibited division protein A y4144 PF13932 GidA associated domain