locus-tag class description YPN_0001 IPR029039 Flavoprotein-like superfamily YPN_0001 IPR008254 Flavodoxin/nitric oxide synthase YPN_0002 IPR000485 AsnC-type HTH domain YPN_0002 IPR036390 Winged helix DNA-binding domain superfamily YPN_0002 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0002 IPR019885 Transcription regulator HTH, AsnC-type, conserved site YPN_0002 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YPN_0002 IPR019888 Transcription regulator AsnC-type YPN_0002 IPR011008 Dimeric alpha-beta barrel YPN_0002 IPR011991 ArsR-like helix-turn-helix domain YPN_0003 IPR004618 Aspartate--ammonia ligase YPN_0003 IPR006195 Aminoacyl-tRNA synthetase, class II YPN_0004 IPR008912 Uncharacterised protein family CoxE-like YPN_0004 IPR036465 von Willebrand factor A-like domain superfamily YPN_0004 IPR002035 von Willebrand factor, type A YPN_0004 IPR023481 Uncharacterised protein family ViaA YPN_0005 IPR041538 ATPase RavA-like, AAA lid domain YPN_0005 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0005 IPR022547 ATPase, RavA, C-terminal YPN_0005 IPR023671 ATPase RavA YPN_0005 IPR011704 ATPase, dynein-related, AAA domain YPN_0005 IPR003593 AAA+ ATPase domain YPN_0006 IPR003855 Potassium transporter YPN_0006 IPR023051 Potassium uptake protein, low affinity, Kup YPN_0007 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU YPN_0007 IPR023750 RbsD-like superfamily YPN_0007 IPR023064 D-ribose pyranase YPN_0008 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPN_0008 IPR011877 Ribokinase YPN_0008 IPR011611 Carbohydrate kinase PfkB YPN_0008 IPR002139 Ribokinase/fructokinase YPN_0008 IPR029056 Ribokinase-like YPN_0010 IPR004638 Drug resistance transporter EmrB-like YPN_0010 IPR011701 Major facilitator superfamily YPN_0010 IPR020846 Major facilitator superfamily domain YPN_0010 IPR036259 MFS transporter superfamily YPN_0011 IPR000524 Transcription regulator HTH, GntR YPN_0011 IPR011711 GntR, C-terminal YPN_0011 IPR008920 Transcription regulator FadR/GntR, C-terminal YPN_0011 IPR036390 Winged helix DNA-binding domain superfamily YPN_0011 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0012 IPR005697 Homoserine O-succinyltransferase MetA YPN_0012 IPR033752 MetA family YPN_0012 IPR029062 Class I glutamine amidotransferase-like YPN_0014 IPR006252 Malate synthase A YPN_0014 IPR011076 Malate synthase-like superfamily YPN_0014 IPR019830 Malate synthase, conserved site YPN_0014 IPR001465 Malate synthase YPN_0015 IPR040442 Pyruvate kinase-like domain superfamily YPN_0015 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPN_0015 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site YPN_0015 IPR006254 Isocitrate lyase YPN_0015 IPR039556 ICL/PEPM domain YPN_0016 IPR010452 Isocitrate dehydrogenase kinasephosphatase YPN_0017 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0017 IPR036390 Winged helix DNA-binding domain superfamily YPN_0017 IPR029016 GAF-like domain superfamily YPN_0017 IPR014757 Transcription regulator IclR, C-terminal YPN_0017 IPR005471 Transcription regulator IclR, N-terminal YPN_0018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily YPN_0018 IPR000489 Pterin-binding domain YPN_0018 IPR036724 Cobalamin-binding domain superfamily YPN_0018 IPR011005 Dihydropteroate synthase-like YPN_0018 IPR003726 Homocysteine-binding domain YPN_0018 IPR036589 Homocysteine-binding domain superfamily YPN_0018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain YPN_0018 IPR033706 Methionine synthase, B12-binding domain YPN_0018 IPR011822 Cobalamin-dependent methionine synthase YPN_0018 IPR006158 Cobalamin (vitamin B12)-binding domain YPN_0018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain YPN_0018 IPR036594 Methionine synthase domain YPN_0019 IPR012334 Pectin lyase fold YPN_0019 IPR025157 Hemagglutinin repeat YPN_0019 IPR008638 Filamentous haemagglutinin, N-terminal YPN_0019 IPR011050 Pectin lyase fold/virulence factor YPN_0020 IPR027282 Two partner secretion pathway transporter YPN_0020 IPR035251 ShlB, POTRA domain YPN_0020 IPR005565 Haemolysin activator HlyB, C-terminal YPN_0020 IPR013686 Polypeptide-transport-associated, ShlB-type YPN_0020 IPR034746 POTRA domain YPN_0021 IPR027282 Two partner secretion pathway transporter YPN_0021 IPR035251 ShlB, POTRA domain YPN_0021 IPR034746 POTRA domain YPN_0021 IPR013686 Polypeptide-transport-associated, ShlB-type YPN_0021 IPR005565 Haemolysin activator HlyB, C-terminal YPN_0022 IPR018042 Aspartate kinase, conserved site YPN_0022 IPR001341 Aspartate kinase YPN_0022 IPR036393 Acetylglutamate kinase-like superfamily YPN_0022 IPR002912 ACT domain YPN_0022 IPR041745 Lysine-sensitive aspartokinase 3, N-terminal catalytic domain YPN_0022 IPR001048 Aspartate/glutamate/uridylate kinase YPN_0022 IPR005260 Aspartate kinase, monofunctional class YPN_0023 IPR035482 Phosphoglucose isomerase, SIS domain 2 YPN_0023 IPR023096 Phosphoglucose isomerase, C-terminal YPN_0023 IPR001672 Phosphoglucose isomerase (PGI) YPN_0023 IPR018189 Phosphoglucose isomerase, conserved site YPN_0023 IPR035476 Phosphoglucose isomerase, SIS domain 1 YPN_0024 IPR020948 Phosphate-starvation-induced PsiE-like YPN_0024 IPR009315 Phosphate-starvation-induced PsiE YPN_0025 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_0025 IPR035906 MetI-like superfamily YPN_0026 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_0026 IPR035906 MetI-like superfamily YPN_0026 IPR030156 Maltose/maltodextrin transport system permease protein MalF-like YPN_0026 IPR029345 Maltose transport system permease protein MalF, P2 domain YPN_0026 IPR035277 MalF, N-terminal YPN_0027 IPR006061 Solute-binding family 1, conserved site YPN_0027 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein YPN_0027 IPR006059 Bacterial extracellular solute-binding protein YPN_0029 IPR003593 AAA+ ATPase domain YPN_0029 IPR017871 ABC transporter, conserved site YPN_0029 IPR003439 ABC transporter-like YPN_0029 IPR008995 Molybdate/tungstate binding, C-terminal YPN_0029 IPR040582 MalK, OB fold domain YPN_0029 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0029 IPR015855 ABC transporter, maltose/maltodextrin import, MalK YPN_0030 IPR036998 Porin, LamB-type superfamily YPN_0030 IPR023738 Maltoporin YPN_0030 IPR003192 Porin, LamB-type YPN_0031 IPR010794 Maltose operon periplasmic YPN_0033 IPR036624 Hcp1-like superfamily YPN_0033 IPR008514 Type VI secretion system effector, Hcp YPN_0038 IPR001584 Integrase, catalytic core YPN_0038 IPR012337 Ribonuclease H-like superfamily YPN_0038 IPR036397 Ribonuclease H superfamily YPN_0038 IPR038965 Transposase InsF-like YPN_0038 IPR025948 HTH-like domain YPN_0040 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site YPN_0040 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type YPN_0040 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPN_0040 IPR033129 Phosphoenolpyruvate carboxylase, His active site YPN_0040 IPR021135 Phosphoenolpyruvate carboxylase YPN_0041 IPR036264 Bacterial exopeptidase dimerisation domain YPN_0041 IPR002933 Peptidase M20 YPN_0041 IPR011650 Peptidase M20, dimerisation domain YPN_0041 IPR010169 Acetylornithine deacetylase ArgE YPN_0041 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YPN_0042 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 YPN_0042 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site YPN_0042 IPR012280 Semialdehyde dehydrogenase, dimerisation domain YPN_0042 IPR036291 NAD(P)-binding domain superfamily YPN_0042 IPR000534 Semialdehyde dehydrogenase, NAD-binding YPN_0043 IPR036393 Acetylglutamate kinase-like superfamily YPN_0043 IPR004662 Acetylglutamate kinase family YPN_0043 IPR037528 Acetylglutamate kinase ArgB YPN_0043 IPR001048 Aspartate/glutamate/uridylate kinase YPN_0043 IPR041731 N-Acetyl-L-glutamate kinase, noncyclic YPN_0044 IPR029419 Argininosuccinate lyase, C-terminal YPN_0044 IPR009049 Argininosuccinate lyase YPN_0044 IPR024083 Fumarase/histidase, N-terminal YPN_0044 IPR020557 Fumarate lyase, conserved site YPN_0044 IPR000362 Fumarate lyase family YPN_0044 IPR022761 Fumarate lyase, N-terminal YPN_0044 IPR008948 L-Aspartase-like YPN_0045 IPR000531 TonB-dependent receptor-like, beta-barrel YPN_0045 IPR037066 TonB-dependent receptor, plug domain superfamily YPN_0045 IPR012910 TonB-dependent receptor, plug domain YPN_0045 IPR011276 TonB-dependent haem/haemoglobin receptor YPN_0045 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor YPN_0045 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPN_0045 IPR039426 Vitamin B12 transporter BtuB-like YPN_0047 IPR003593 AAA+ ATPase domain YPN_0047 IPR011527 ABC transporter type 1, transmembrane domain YPN_0047 IPR003439 ABC transporter-like YPN_0047 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPN_0047 IPR017871 ABC transporter, conserved site YPN_0047 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0047 IPR010128 ATPase, type I secretion system, PrtD YPN_0048 IPR006144 Secretion protein HlyD, conserved site YPN_0048 IPR010129 Type I secretion membrane fusion protein, HlyD family YPN_0049 IPR037682 TonB, C-terminal YPN_0049 IPR006260 TonB/TolA, C-terminal YPN_0050 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site YPN_0050 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPN_0050 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I YPN_0050 IPR006258 Dihydrolipoamide dehydrogenase YPN_0050 IPR023753 FAD/NAD(P)-binding domain YPN_0050 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_0050 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily YPN_0051 IPR014025 Glutaredoxin subgroup YPN_0051 IPR011767 Glutaredoxin active site YPN_0051 IPR037944 Peroxiredoxin-5-like YPN_0051 IPR011906 Glutaredoxin domain YPN_0051 IPR013740 Redoxin YPN_0051 IPR002109 Glutaredoxin YPN_0051 IPR036249 Thioredoxin-like superfamily YPN_0052 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0052 IPR000847 Transcription regulator HTH, LysR YPN_0052 IPR005119 LysR, substrate-binding YPN_0052 IPR036390 Winged helix DNA-binding domain superfamily YPN_0053 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_0053 IPR023753 FAD/NAD(P)-binding domain YPN_0053 IPR022962 Soluble pyridine nucleotide transhydrogenase YPN_0053 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPN_0053 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily YPN_0053 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I YPN_0054 IPR009057 Homeobox-like domain superfamily YPN_0054 IPR023764 Transcriptional repressor HTH, FabR YPN_0054 IPR001647 DNA-binding HTH domain, TetR-type YPN_0055 IPR009867 Protein of unknown function DUF1422 YPN_0056 IPR010280 (Uracil-5)-methyltransferase family YPN_0056 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA YPN_0056 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_0056 IPR030391 RNA methyltransferase TrmA, conserved site YPN_0056 IPR030390 RNA methyltransferase TrmA, active site YPN_0057 IPR010917 TonB-dependent receptor, conserved site YPN_0057 IPR010101 TonB-dependent vitamin B12 transporter BtuB YPN_0057 IPR039426 Vitamin B12 transporter BtuB-like YPN_0057 IPR012910 TonB-dependent receptor, plug domain YPN_0057 IPR000531 TonB-dependent receptor-like, beta-barrel YPN_0057 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPN_0057 IPR037066 TonB-dependent receptor, plug domain superfamily YPN_0058 IPR015942 Asp/Glu/hydantoin racemase YPN_0058 IPR001920 Asp/Glu racemase YPN_0058 IPR018187 Asp/Glu racemase, active site 1 YPN_0058 IPR033134 Asp/Glu racemase, active site 2 YPN_0058 IPR004391 Glutamate racemase YPN_0059 IPR028082 Periplasmic binding protein-like I YPN_0059 IPR025997 Periplasmic binding protein YPN_0059 IPR033893 ABC transporter periplasmic-binding protein YtfQ YPN_0060 IPR003593 AAA+ ATPase domain YPN_0060 IPR003439 ABC transporter-like YPN_0060 IPR017871 ABC transporter, conserved site YPN_0060 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0061 IPR001851 ABC transporter, permease YPN_0062 IPR001851 ABC transporter, permease YPN_0063 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0063 IPR036390 Winged helix DNA-binding domain superfamily YPN_0063 IPR020890 Transcription regulator HTH, HdfR YPN_0063 IPR005119 LysR, substrate-binding YPN_0063 IPR000847 Transcription regulator HTH, LysR YPN_0064 IPR007335 Protein of unknown function DUF413 YPN_0065 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0065 IPR003593 AAA+ ATPase domain YPN_0065 IPR000523 Magnesium chelatase ChlI domain YPN_0065 IPR025158 Mg chelatase-related protein, C-terminal domain YPN_0065 IPR004482 Mg chelatase-related protein YPN_0065 IPR020568 Ribosomal protein S5 domain 2-type fold YPN_0065 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPN_0066 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPN_0066 IPR012846 Acetolactate synthase, large subunit, biosynthetic YPN_0066 IPR012000 Thiamine pyrophosphate enzyme, central domain YPN_0066 IPR029061 Thiamin diphosphate-binding fold YPN_0066 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPN_0066 IPR039368 Acetolactate synthase large subunit, TPP binding domain YPN_0066 IPR000399 TPP-binding enzyme, conserved site YPN_0066 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPN_0067 IPR002912 ACT domain YPN_0068 IPR005785 Branched-chain amino acid aminotransferase I YPN_0068 IPR036038 Aminotransferase-like, PLP-dependent enzymes YPN_0068 IPR033939 Branched-chain aminotransferase YPN_0068 IPR018300 Aminotransferase, class IV, conserved site YPN_0068 IPR001544 Aminotransferase class IV YPN_0069 IPR004404 Dihydroxy-acid dehydratase YPN_0069 IPR042096 Dihydroxy-acid dehydratase, C-terminal YPN_0069 IPR037237 IlvD/EDD, N-terminal domain YPN_0069 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase YPN_0069 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site YPN_0070 IPR005787 Threonine dehydratase, biosynthetic YPN_0070 IPR038110 Threonine dehydratase, ACT-like domain superfamily YPN_0070 IPR001926 Pyridoxal-phosphate dependent enzyme YPN_0070 IPR001721 Threonine dehydratase, ACT-like domain YPN_0070 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site YPN_0070 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPN_0076 IPR036390 Winged helix DNA-binding domain superfamily YPN_0076 IPR000847 Transcription regulator HTH, LysR YPN_0076 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0076 IPR005119 LysR, substrate-binding YPN_0076 IPR037404 HTH-type transcriptional activator IlvY, PBP2 domain YPN_0077 IPR036291 NAD(P)-binding domain superfamily YPN_0077 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPN_0077 IPR000506 Ketol-acid reductoisomerase, C-terminal YPN_0077 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPN_0077 IPR013023 Ketol-acid reductoisomerase YPN_0077 IPR013116 Ketol-acid reductoisomerase, N-terminal YPN_0081 IPR035900 Colicin E immunity protein superfamily YPN_0081 IPR000290 Colicin immunity protein/pyocin immunity protein YPN_0083 IPR016147 Pili assembly chaperone, N-terminal YPN_0083 IPR018046 Pili assembly chaperone, conserved site YPN_0083 IPR016148 Pili assembly chaperone, C-terminal YPN_0083 IPR001829 Pili assembly chaperone, bacterial YPN_0083 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPN_0083 IPR008962 PapD-like superfamily YPN_0083 IPR013783 Immunoglobulin-like fold YPN_0085 IPR018030 Fimbrial membrane usher, conserved site YPN_0085 IPR000015 Outer membrane usher protein YPN_0085 IPR037224 PapC, N-terminal domain superfamily YPN_0085 IPR025885 PapC, N-terminal domain YPN_0085 IPR025949 PapC-like, C-terminal domain YPN_0085 IPR042186 Outer membrane usher protein FimD, plug domain YPN_0086 IPR016147 Pili assembly chaperone, N-terminal YPN_0086 IPR008962 PapD-like superfamily YPN_0086 IPR016148 Pili assembly chaperone, C-terminal YPN_0086 IPR001829 Pili assembly chaperone, bacterial YPN_0086 IPR013783 Immunoglobulin-like fold YPN_0086 IPR018046 Pili assembly chaperone, conserved site YPN_0086 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPN_0088 IPR001207 Transposase, mutator type YPN_0090 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site YPN_0090 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type YPN_0091 IPR034739 UvrD/AddA helicase, N-terminal YPN_0091 IPR014017 UvrD-like DNA helicase, C-terminal YPN_0091 IPR000212 DNA helicase, UvrD/REP type YPN_0091 IPR005752 ATP-dependent DNA helicase Rep YPN_0091 IPR013986 DExx box DNA helicase domain superfamily YPN_0091 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0091 IPR014016 UvrD-like helicase, ATP-binding domain YPN_0092 IPR023709 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase YPN_0092 IPR030673 Pyrophosphatase, GppA/Ppx-type YPN_0092 IPR003695 Ppx/GppA phosphatase YPN_0092 IPR022371 Exopolyphosphatase YPN_0093 IPR022371 Exopolyphosphatase YPN_0093 IPR023709 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase YPN_0093 IPR003695 Ppx/GppA phosphatase YPN_0093 IPR030673 Pyrophosphatase, GppA/Ppx-type YPN_0094 IPR023554 ATP-dependent RNA helicase RhlB type YPN_0094 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPN_0094 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPN_0094 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0094 IPR014014 RNA helicase, DEAD-box type, Q motif YPN_0094 IPR011545 DEAD/DEAH box helicase domain YPN_0094 IPR001650 Helicase, C-terminal YPN_0095 IPR013766 Thioredoxin domain YPN_0095 IPR036249 Thioredoxin-like superfamily YPN_0095 IPR017937 Thioredoxin, conserved site YPN_0095 IPR005746 Thioredoxin YPN_0096 IPR036269 Rho termination factor, N-terminal domain superfamily YPN_0096 IPR011113 Rho termination factor, RNA-binding domain YPN_0096 IPR004665 Transcription termination factor Rho YPN_0096 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0096 IPR012340 Nucleic acid-binding, OB-fold YPN_0096 IPR011129 Cold shock domain YPN_0096 IPR011112 Rho termination factor, N-terminal YPN_0096 IPR003593 AAA+ ATPase domain YPN_0096 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPN_0096 IPR041703 Transcription termination factor Rho, ATP binding domain YPN_0097 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase YPN_0097 IPR000715 Glycosyl transferase, family 4 YPN_0098 IPR032895 ECA polysaccharide chain length modulation protein WzzE YPN_0098 IPR003856 Polysaccharide chain length determinant N-terminal domain YPN_0099 IPR032892 UDP-N-acetylglucosamine 2-epimerase WecB YPN_0099 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like YPN_0099 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain YPN_0100 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPN_0100 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily YPN_0100 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation YPN_0100 IPR036291 NAD(P)-binding domain superfamily YPN_0100 IPR017476 UDP-glucose/GDP-mannose dehydrogenase YPN_0100 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal YPN_0100 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase YPN_0100 IPR032891 UDP-N-acetyl-D-mannosamine dehydrogenase WecC YPN_0100 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal YPN_0101 IPR005888 dTDP-glucose 4,6-dehydratase YPN_0101 IPR016040 NAD(P)-binding domain YPN_0101 IPR036291 NAD(P)-binding domain superfamily YPN_0102 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form YPN_0102 IPR005835 Nucleotidyl transferase domain YPN_0102 IPR029044 Nucleotide-diphospho-sugar transferases YPN_0103 IPR012752 dTDP-fucosamine acetyltransferase WecD YPN_0103 IPR016181 Acyl-CoA N-acyltransferase YPN_0103 IPR002110 Ankyrin repeat YPN_0103 IPR020683 Ankyrin repeat-containing domain YPN_0103 IPR000182 GNAT domain YPN_0104 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YPN_0104 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_0104 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_0104 IPR032894 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE YPN_0104 IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like YPN_0104 IPR015424 Pyridoxal phosphate-dependent transferase YPN_0105 IPR002797 Polysaccharide biosynthesis protein YPN_0105 IPR032896 Lipid III flippase WzxE YPN_0106 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase YPN_0107 IPR010691 Probable ECA polymerase WzyE YPN_0108 IPR023085 UDP-N-acetyl-D-mannosaminuronic acid transferase YPN_0108 IPR004629 Glycosyl transferase WecB/TagA/CpsF YPN_0109 IPR004840 Amino acid permease, conserved site YPN_0109 IPR004841 Amino acid permease/ SLC12A domain YPN_0111 IPR013105 Tetratricopeptide repeat 2 YPN_0111 IPR013026 Tetratricopeptide repeat-containing domain YPN_0111 IPR010817 HemY, N-terminal YPN_0111 IPR005254 Heme biosynthesis-associated TPR protein YPN_0111 IPR011990 Tetratricopeptide-like helical domain superfamily YPN_0111 IPR019734 Tetratricopeptide repeat YPN_0112 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX YPN_0113 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily YPN_0113 IPR039793 Uroporphyrinogen-III synthase YPN_0113 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase YPN_0114 IPR000860 Porphobilinogen deaminase YPN_0114 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site YPN_0114 IPR022417 Porphobilinogen deaminase, N-terminal YPN_0114 IPR022418 Porphobilinogen deaminase, C-terminal YPN_0114 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily YPN_0116 IPR024686 Adenylate cyclase class-I, conserved site YPN_0116 IPR024685 Adenylate cyclase class-I, N-terminal domain YPN_0116 IPR000274 Adenylate cyclase, class-I YPN_0117 IPR002908 Frataxin/CyaY YPN_0117 IPR020895 Frataxin conserved site YPN_0117 IPR036524 Frataxin/CyaY superfamily YPN_0118 IPR032831 Prokaryotic lipoprotein-attachment site YPN_0119 IPR018510 Diaminopimelate epimerase, active site YPN_0119 IPR001653 Diaminopimelate epimerase, DapF YPN_0120 IPR029016 GAF-like domain superfamily YPN_0120 IPR007435 Protein of unknown function DUF484 YPN_0121 IPR013762 Integrase-like, catalytic domain superfamily YPN_0121 IPR002104 Integrase, catalytic domain YPN_0121 IPR010998 Integrase/recombinase, N-terminal YPN_0121 IPR004107 Integrase, SAM-like, N-terminal YPN_0121 IPR023009 Tyrosine recombinase XerC/XerD YPN_0121 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPN_0121 IPR011931 Tyrosine recombinase XerC YPN_0122 IPR036412 HAD-like superfamily YPN_0122 IPR041492 Haloacid dehalogenase-like hydrolase YPN_0122 IPR006439 HAD hydrolase, subfamily IA YPN_0122 IPR023214 HAD superfamily YPN_0123 IPR034739 UvrD/AddA helicase, N-terminal YPN_0123 IPR014016 UvrD-like helicase, ATP-binding domain YPN_0123 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0123 IPR000212 DNA helicase, UvrD/REP type YPN_0123 IPR014017 UvrD-like DNA helicase, C-terminal YPN_0123 IPR005753 DNA helicase, ATP-dependent, UvrD type YPN_0123 IPR013986 DExx box DNA helicase domain superfamily YPN_0125 IPR008322 Uncharacterised protein family UPF0261 YPN_0126 IPR013785 Aldolase-type TIM barrel YPN_0126 IPR009215 TIM-barrel domain, IGPS-like YPN_0126 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPN_0127 IPR004488 Magnesium/cobalt transport protein CorA YPN_0127 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB YPN_0128 IPR000620 EamA domain YPN_0128 IPR004626 RarD protein YPN_0129 IPR029069 HotDog domain superfamily YPN_0129 IPR003736 Phenylacetic acid degradation-related domain YPN_0129 IPR006683 Thioesterase domain YPN_0130 IPR003187 Phospholipase A1 YPN_0130 IPR036541 Phospholipase A1 superfamily YPN_0131 IPR018982 RQC domain YPN_0131 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0131 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial YPN_0131 IPR002121 HRDC domain YPN_0131 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain YPN_0131 IPR010997 HRDC-like superfamily YPN_0131 IPR001650 Helicase, C-terminal YPN_0131 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPN_0131 IPR011545 DEAD/DEAH box helicase domain YPN_0131 IPR004589 DNA helicase, ATP-dependent, RecQ type YPN_0131 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0132 IPR004778 Homoserine/Threonine efflux protein YPN_0132 IPR001123 Amino acid exporter protein, LeuE-type YPN_0133 IPR001123 Amino acid exporter protein, LeuE-type YPN_0133 IPR004778 Homoserine/Threonine efflux protein YPN_0134 IPR022742 Serine aminopeptidase, S33 YPN_0134 IPR029058 Alpha/Beta hydrolase fold YPN_0135 IPR006379 HAD-superfamily hydrolase, subfamily IIB YPN_0135 IPR036412 HAD-like superfamily YPN_0135 IPR000150 Cof family YPN_0135 IPR023214 HAD superfamily YPN_0137 IPR030395 Glycerophosphodiester phosphodiesterase domain YPN_0137 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily YPN_0138 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_0138 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase YPN_0138 IPR007419 BFD-like [2Fe-2S]-binding domain YPN_0138 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily YPN_0138 IPR006076 FAD dependent oxidoreductase YPN_0138 IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit YPN_0139 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain YPN_0139 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit YPN_0139 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_0140 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPN_0140 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPN_0140 IPR004017 Cysteine-rich domain YPN_0140 IPR017753 Glycerol-3-phosphate dehydrogenase, GlpC subunit YPN_0140 IPR009051 Alpha-helical ferredoxin YPN_0141 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich YPN_0141 IPR014894 Protein DcrB YPN_0142 IPR003744 Queuosine precursor transporter YPN_0143 IPR036868 TusA-like domain superfamily YPN_0143 IPR022931 Sulfur carrier protein TusA YPN_0143 IPR001455 TusA-like domain YPN_0144 IPR018303 P-type ATPase, phosphorylation site YPN_0144 IPR001757 P-type ATPase YPN_0144 IPR023298 P-type ATPase, transmembrane domain superfamily YPN_0144 IPR008250 P-type ATPase, A domain superfamily YPN_0144 IPR023299 P-type ATPase, cytoplasmic domain N YPN_0144 IPR023214 HAD superfamily YPN_0144 IPR027256 P-type ATPase, subfamily IB YPN_0144 IPR017969 Heavy-metal-associated, conserved site YPN_0144 IPR006121 Heavy metal-associated domain, HMA YPN_0144 IPR036163 Heavy metal-associated domain superfamily YPN_0144 IPR036412 HAD-like superfamily YPN_0145 IPR012506 YhhN-like YPN_0148 IPR009525 Protein of unknown function DUF1145 YPN_0149 IPR004398 RNA methyltransferase, RsmD YPN_0149 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_0149 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPN_0150 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain YPN_0150 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain YPN_0150 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily YPN_0150 IPR003593 AAA+ ATPase domain YPN_0150 IPR013822 Signal recognition particle SRP54, helical bundle YPN_0150 IPR004390 Signal-recognition particle receptor FtsY YPN_0150 IPR036225 SRP/SRP receptor, N-terminal YPN_0150 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0150 IPR003593 AAA+ ATPase domain YPN_0150 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0150 IPR013822 Signal recognition particle SRP54, helical bundle YPN_0150 IPR004390 Signal-recognition particle receptor FtsY YPN_0150 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily YPN_0150 IPR036225 SRP/SRP receptor, N-terminal YPN_0151 IPR003593 AAA+ ATPase domain YPN_0151 IPR017871 ABC transporter, conserved site YPN_0151 IPR005286 Cell division protein FtsE, ATP-binding YPN_0151 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0151 IPR003439 ABC transporter-like YPN_0152 IPR004513 Cell division protein FtsX YPN_0152 IPR003838 ABC transporter permease protein domain YPN_0152 IPR040690 FtsX, extracellular domain YPN_0153 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0153 IPR013324 RNA polymerase sigma factor, region 3/4-like YPN_0153 IPR013325 RNA polymerase sigma factor, region 2 YPN_0153 IPR007630 RNA polymerase sigma-70 region 4 YPN_0153 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria YPN_0153 IPR000943 RNA polymerase sigma-70 YPN_0153 IPR014284 RNA polymerase sigma-70 like domain YPN_0153 IPR007627 RNA polymerase sigma-70 region 2 YPN_0153 IPR009042 RNA polymerase sigma-70 region 1.2 YPN_0154 IPR002686 Transposase IS200-like YPN_0154 IPR036515 Transposase IS200-like superfamily YPN_0155 IPR040448 PanZ, acetyltransferase (GNAT) domain YPN_0155 IPR016181 Acyl-CoA N-acyltransferase YPN_0155 IPR032900 PanD regulatory factor PanZ YPN_0155 IPR000182 GNAT domain YPN_0156 IPR028082 Periplasmic binding protein-like I YPN_0156 IPR028081 Leucine-binding protein domain YPN_0156 IPR000709 Leu/Ile/Val-binding protein YPN_0157 IPR001851 ABC transporter, permease YPN_0158 IPR001851 ABC transporter, permease YPN_0158 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal YPN_0159 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal YPN_0159 IPR017871 ABC transporter, conserved site YPN_0159 IPR003439 ABC transporter-like YPN_0159 IPR003593 AAA+ ATPase domain YPN_0159 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0160 IPR003439 ABC transporter-like YPN_0160 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein YPN_0160 IPR017871 ABC transporter, conserved site YPN_0160 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0160 IPR003593 AAA+ ATPase domain YPN_0168 IPR006061 Solute-binding family 1, conserved site YPN_0168 IPR006059 Bacterial extracellular solute-binding protein YPN_0169 IPR035906 MetI-like superfamily YPN_0169 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_0170 IPR035906 MetI-like superfamily YPN_0170 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_0170 IPR030165 sn-Glycerol-3-phosphate transport system permease protein UgpE YPN_0171 IPR017871 ABC transporter, conserved site YPN_0171 IPR017922 sn-Glycerol-3-phosphate import ATP-binding protein UgpC YPN_0171 IPR040582 MalK, OB fold domain YPN_0171 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0171 IPR003593 AAA+ ATPase domain YPN_0171 IPR008995 Molybdate/tungstate binding, C-terminal YPN_0171 IPR003439 ABC transporter-like YPN_0172 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily YPN_0172 IPR030395 Glycerophosphodiester phosphodiesterase domain YPN_0173 IPR004776 Membrane transport protein YPN_0174 IPR004779 Carboxylate/Amino Acid/Amine Transporter YPN_0174 IPR000620 EamA domain YPN_0175 IPR000847 Transcription regulator HTH, LysR YPN_0175 IPR005119 LysR, substrate-binding YPN_0175 IPR037406 HTH-type transcriptional regulator MetR, PBP2 domain YPN_0175 IPR036390 Winged helix DNA-binding domain superfamily YPN_0175 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0176 IPR038071 UROD/MetE-like superfamily YPN_0176 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal YPN_0176 IPR006276 Cobalamin-independent methionine synthase YPN_0176 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal YPN_0177 IPR002925 Dienelactone hydrolase YPN_0177 IPR029058 Alpha/Beta hydrolase fold YPN_0178 IPR010058 Uridine phosphorylase YPN_0178 IPR000845 Nucleoside phosphorylase domain YPN_0178 IPR035994 Nucleoside phosphorylase superfamily YPN_0178 IPR018016 Nucleoside phosphorylase, conserved site YPN_0180 IPR003706 CstA, N-terminal domain YPN_0180 IPR025299 CstA, C-terminal domain YPN_0181 IPR032818 DedA family YPN_0181 IPR032816 SNARE associated Golgi protein YPN_0182 IPR003798 DNA recombination RmuC YPN_0183 IPR023576 UbiE/COQ5 methyltransferase, conserved site YPN_0183 IPR004033 UbiE/COQ5 methyltransferase YPN_0183 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_0184 IPR003033 SCP2 sterol-binding domain YPN_0184 IPR036527 SCP2 sterol-binding domain superfamily YPN_0184 IPR038989 Ubiquinone biosynthesis protein UbiJ YPN_0185 IPR004147 UbiB domain YPN_0185 IPR011009 Protein kinase-like domain superfamily YPN_0185 IPR010232 Probable protein kinase UbiB YPN_0186 IPR003369 Sec-independent protein translocase protein TatA/B/E YPN_0186 IPR006312 Sec-independent protein translocase protein TatA/E YPN_0187 IPR018448 Twin-arginine translocation protein TatB YPN_0188 IPR002033 Sec-independent periplasmic protein translocase TatC YPN_0188 IPR019820 Sec-independent periplasmic protein translocase, conserved site YPN_0189 IPR018228 Deoxyribonuclease, TatD-related, conserved site YPN_0189 IPR001130 TatD family YPN_0189 IPR032466 Metal-dependent hydrolase YPN_0189 IPR024918 3'-5' ssDNA/RNA exonuclease TatD YPN_0190 IPR036397 Ribonuclease H superfamily YPN_0190 IPR012337 Ribonuclease H-like superfamily YPN_0190 IPR006120 Resolvase, HTH domain YPN_0190 IPR017894 HTH domain, IS21 transposase-type YPN_0190 IPR001584 Integrase, catalytic core YPN_0191 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0191 IPR003593 AAA+ ATPase domain YPN_0191 IPR001270 ClpA/B family YPN_0191 IPR002611 IstB-like ATP-binding protein YPN_0191 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_0192 IPR032466 Metal-dependent hydrolase YPN_0192 IPR001130 TatD family YPN_0192 IPR018228 Deoxyribonuclease, TatD-related, conserved site YPN_0192 IPR024918 3'-5' ssDNA/RNA exonuclease TatD YPN_0193 IPR001731 Delta-aminolevulinic acid dehydratase YPN_0193 IPR030656 Delta-aminolevulinic acid dehydratase, active site YPN_0193 IPR013785 Aldolase-type TIM barrel YPN_0194 IPR036735 NusG, N-terminal domain superfamily YPN_0194 IPR010215 Transcription antitermination protein RfaH YPN_0194 IPR006645 NusG, N-terminal YPN_0195 IPR023677 UbiD decarboxylyase, bacteria YPN_0195 IPR002830 UbiD decarboxylyase family YPN_0196 IPR017938 Riboflavin synthase-like beta-barrel YPN_0196 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPN_0196 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPN_0196 IPR017927 FAD-binding domain, ferredoxin reductase-type YPN_0196 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPN_0197 IPR020610 Thiolase, active site YPN_0197 IPR020617 Thiolase, C-terminal YPN_0197 IPR002155 Thiolase YPN_0197 IPR016039 Thiolase-like YPN_0197 IPR012805 Acetyl-CoA C-acyltransferase FadA YPN_0197 IPR020616 Thiolase, N-terminal YPN_0197 IPR020613 Thiolase, conserved site YPN_0197 IPR020615 Thiolase, acyl-enzyme intermediate active site YPN_0198 IPR029045 ClpP/crotonase-like domain superfamily YPN_0198 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPN_0198 IPR012799 Fatty oxidation complex, alpha subunit FadB YPN_0198 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site YPN_0198 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding YPN_0198 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal YPN_0198 IPR001753 Enoyl-CoA hydratase/isomerase YPN_0198 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site YPN_0198 IPR036291 NAD(P)-binding domain superfamily YPN_0199 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPN_0199 IPR000994 Peptidase M24 YPN_0199 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site YPN_0199 IPR022846 Xaa-Pro dipeptidase YPN_0199 IPR036005 Creatinase/aminopeptidase-like YPN_0200 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal YPN_0200 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site YPN_0200 IPR035647 EF-G domain III/V-like YPN_0200 IPR020568 Ribosomal protein S5 domain 2-type fold YPN_0200 IPR036956 Impact, N-terminal domain superfamily YPN_0200 IPR023582 Impact family YPN_0200 IPR001498 Impact, N-terminal YPN_0200 IPR015796 Impact family, bacterial/archaeal YPN_0202 IPR015796 Impact family, bacterial/archaeal YPN_0202 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal YPN_0202 IPR020568 Ribosomal protein S5 domain 2-type fold YPN_0202 IPR036956 Impact, N-terminal domain superfamily YPN_0202 IPR001498 Impact, N-terminal YPN_0202 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site YPN_0202 IPR035647 EF-G domain III/V-like YPN_0202 IPR023582 Impact family YPN_0203 IPR004772 TrkH potassium transport family YPN_0203 IPR003445 Cation transporter YPN_0204 IPR026816 Flavodoxin domain YPN_0204 IPR001226 Flavodoxin, conserved site YPN_0204 IPR008254 Flavodoxin/nitric oxide synthase YPN_0204 IPR029039 Flavoprotein-like superfamily YPN_0205 IPR016166 FAD-binding domain, PCMH-type YPN_0205 IPR006094 FAD linked oxidase, N-terminal YPN_0205 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily YPN_0205 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal YPN_0205 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase YPN_0205 IPR016169 FAD-binding, type PCMH, subdomain 2 YPN_0205 IPR016167 FAD-binding, type PCMH, subdomain 1 YPN_0205 IPR036318 FAD-binding, type PCMH-like superfamily YPN_0206 IPR003142 Biotin protein ligase, C-terminal YPN_0206 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0206 IPR008988 Transcriptional repressor, C-terminal YPN_0206 IPR013196 Helix-turn-helix, type 11 YPN_0206 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain YPN_0206 IPR004409 Biotin operon repressor, helix-turn-helix domain YPN_0206 IPR004408 Biotin--acetyl-CoA-carboxylase ligase YPN_0206 IPR030855 Bifunctional ligase/repressor BirA YPN_0206 IPR036390 Winged helix DNA-binding domain superfamily YPN_0207 IPR006083 Phosphoribulokinase/uridine kinase YPN_0207 IPR004566 Pantothenate kinase YPN_0207 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0208 IPR000182 GNAT domain YPN_0208 IPR016181 Acyl-CoA N-acyltransferase YPN_0209 IPR012337 Ribonuclease H-like superfamily YPN_0209 IPR006120 Resolvase, HTH domain YPN_0209 IPR001584 Integrase, catalytic core YPN_0209 IPR017894 HTH domain, IS21 transposase-type YPN_0209 IPR036397 Ribonuclease H superfamily YPN_0210 IPR003593 AAA+ ATPase domain YPN_0210 IPR001270 ClpA/B family YPN_0210 IPR002611 IstB-like ATP-binding protein YPN_0210 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_0210 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0211 IPR009000 Translation protein, beta-barrel domain superfamily YPN_0211 IPR000795 Transcription factor, GTP-binding domain YPN_0211 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPN_0211 IPR005225 Small GTP-binding protein domain YPN_0211 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0211 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain YPN_0211 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal YPN_0211 IPR031157 Tr-type G domain, conserved site YPN_0211 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle YPN_0211 IPR033720 Elongation factor Tu, domain 2 YPN_0211 IPR004161 Translation elongation factor EFTu-like, domain 2 YPN_0212 IPR000795 Transcription factor, GTP-binding domain YPN_0212 IPR009000 Translation protein, beta-barrel domain superfamily YPN_0212 IPR005225 Small GTP-binding protein domain YPN_0212 IPR004161 Translation elongation factor EFTu-like, domain 2 YPN_0212 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain YPN_0212 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle YPN_0212 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPN_0212 IPR033720 Elongation factor Tu, domain 2 YPN_0212 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0212 IPR031157 Tr-type G domain, conserved site YPN_0212 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal YPN_0213 IPR005807 SecE subunit of protein translocation complex, bacterial-like YPN_0213 IPR038379 SecE superfamily YPN_0213 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit YPN_0214 IPR006645 NusG, N-terminal YPN_0214 IPR005824 KOW YPN_0214 IPR001062 Transcription antitermination protein, NusG YPN_0214 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site YPN_0214 IPR008991 Translation protein SH3-like domain superfamily YPN_0214 IPR014722 Ribosomal protein L2, domain 2 YPN_0214 IPR036735 NusG, N-terminal domain superfamily YPN_0215 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily YPN_0215 IPR006519 Ribosomal protein L11, bacterial-type YPN_0215 IPR020784 Ribosomal protein L11, N-terminal YPN_0215 IPR020785 Ribosomal protein L11, conserved site YPN_0215 IPR000911 Ribosomal protein L11/L12 YPN_0215 IPR036769 Ribosomal protein L11, C-terminal domain superfamily YPN_0215 IPR020783 Ribosomal protein L11, C-terminal YPN_0216 IPR023673 Ribosomal protein L1, conserved site YPN_0216 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich YPN_0216 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein YPN_0216 IPR023674 Ribosomal protein L1-like YPN_0216 IPR002143 Ribosomal protein L1 YPN_0216 IPR005878 Ribosomal protein L1, bacterial-type YPN_0217 IPR022973 Ribosomal protein L10 YPN_0217 IPR002363 Ribosomal protein L10, eubacterial, conserved site YPN_0217 IPR001790 Ribosomal protein L10P YPN_0218 IPR008932 Ribosomal protein L7/L12, oligomerisation YPN_0218 IPR013823 Ribosomal protein L7/L12, C-terminal YPN_0218 IPR000206 Ribosomal protein L7/L12 YPN_0218 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily YPN_0218 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like YPN_0219 IPR007641 RNA polymerase Rpb2, domain 7 YPN_0219 IPR037034 RNA polymerase Rpb2, domain 2 superfamily YPN_0219 IPR007642 RNA polymerase Rpb2, domain 2 YPN_0219 IPR007644 RNA polymerase, beta subunit, protrusion YPN_0219 IPR007121 RNA polymerase, beta subunit, conserved site YPN_0219 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type YPN_0219 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily YPN_0219 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain YPN_0219 IPR015712 DNA-directed RNA polymerase, subunit 2 YPN_0219 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain YPN_0219 IPR014724 RNA polymerase Rpb2, OB-fold YPN_0219 IPR007645 RNA polymerase Rpb2, domain 3 YPN_0220 IPR007081 RNA polymerase Rpb1, domain 5 YPN_0220 IPR012754 DNA-directed RNA polymerase, subunit beta-prime YPN_0220 IPR000722 RNA polymerase, alpha subunit YPN_0220 IPR006592 RNA polymerase, N-terminal YPN_0220 IPR007080 RNA polymerase Rpb1, domain 1 YPN_0220 IPR007066 RNA polymerase Rpb1, domain 3 YPN_0220 IPR042102 RNA polymerase Rpb1, domain 3 superfamily YPN_0220 IPR038120 RNA polymerase Rpb1, funnel domain superfamily YPN_0220 IPR007083 RNA polymerase Rpb1, domain 4 YPN_0221 IPR036515 Transposase IS200-like superfamily YPN_0221 IPR002686 Transposase IS200-like YPN_0222 IPR010722 Biotin and thiamin synthesis-associated domain YPN_0222 IPR034428 ThiH/NocL/HydG-like YPN_0222 IPR007197 Radical SAM YPN_0222 IPR012726 Thiazole biosynthesis ThiH YPN_0222 IPR013785 Aldolase-type TIM barrel YPN_0223 IPR008867 Thiazole synthase YPN_0223 IPR033983 Thiazole synthase ThiG YPN_0223 IPR013785 Aldolase-type TIM barrel YPN_0225 IPR012731 Thiazole biosynthesis adenylyltransferase ThiF YPN_0225 IPR035985 Ubiquitin-activating enzyme YPN_0225 IPR000594 THIF-type NAD/FAD binding fold YPN_0226 IPR034291 Thiamine phosphate synthase YPN_0226 IPR013785 Aldolase-type TIM barrel YPN_0226 IPR036206 Thiamin phosphate synthase superfamily YPN_0226 IPR022998 Thiamine phosphate synthase/TenI YPN_0227 IPR038521 ThiC/Bza superfamily YPN_0227 IPR037509 Phosphomethylpyrimidine synthase YPN_0227 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B YPN_0227 IPR025747 ThiC-associated domain YPN_0228 IPR023785 Regulator of RNA polymerase sigma(70) subunit, Rsd YPN_0228 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ YPN_0228 IPR038309 Rsd/AlgQ superfamily YPN_0229 IPR022925 NADH pyrophosphatase NudC YPN_0229 IPR020084 NUDIX hydrolase, conserved site YPN_0229 IPR015797 NUDIX hydrolase-like domain superfamily YPN_0229 IPR000086 NUDIX hydrolase domain YPN_0229 IPR015376 Zinc ribbon, NADH pyrophosphatase YPN_0231 IPR000257 Uroporphyrinogen decarboxylase (URO-D) YPN_0231 IPR038071 UROD/MetE-like superfamily YPN_0231 IPR006361 Uroporphyrinogen decarboxylase HemE YPN_0232 IPR007581 Endonuclease V YPN_0233 IPR007338 Protein of unknown function DUF416 YPN_0233 IPR023381 YP001051499.1-like domain superfamily YPN_0234 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily YPN_0234 IPR000119 Histone-like DNA-binding protein YPN_0234 IPR020816 Histone-like DNA-binding protein, conserved site YPN_0235 IPR016500 Uncharacterised conserved protein UCP006993 YPN_0235 IPR010858 Protein of unknown function DUF1481 YPN_0236 IPR016185 Pre-ATP-grasp domain superfamily YPN_0236 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YPN_0236 IPR000115 Phosphoribosylglycinamide synthetase YPN_0236 IPR020560 Phosphoribosylglycinamide synthetase, C-domain YPN_0236 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily YPN_0236 IPR013815 ATP-grasp fold, subdomain 1 YPN_0236 IPR020559 Phosphoribosylglycinamide synthetase, conserved site YPN_0236 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal YPN_0236 IPR011761 ATP-grasp fold YPN_0236 IPR011054 Rudiment single hybrid motif YPN_0237 IPR024051 AICAR transformylase, duplicated domain superfamily YPN_0237 IPR016193 Cytidine deaminase-like YPN_0237 IPR002695 Bifunctional purine biosynthesis protein PurH-like YPN_0237 IPR036914 Methylglyoxal synthase-like domain superfamily YPN_0237 IPR011607 Methylglyoxal synthase-like domain YPN_0238 IPR001207 Transposase, mutator type YPN_0239 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0239 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain YPN_0240 IPR013482 Molybdenum cofactor guanylyltransferase YPN_0240 IPR029044 Nucleotide-diphospho-sugar transferases YPN_0240 IPR025877 MobA-like NTP transferase YPN_0241 IPR038134 YihD-like superfamily YPN_0241 IPR009383 Protein of unknown function DUF1040 YPN_0242 IPR002575 Aminoglycoside phosphotransferase YPN_0242 IPR011009 Protein kinase-like domain superfamily YPN_0242 IPR032882 SrkA/RdoA protein kinase YPN_0243 IPR013766 Thioredoxin domain YPN_0243 IPR036249 Thioredoxin-like superfamily YPN_0243 IPR017937 Thioredoxin, conserved site YPN_0243 IPR001853 DSBA-like thioredoxin domain YPN_0243 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL YPN_0244 IPR020045 DNA polymerase I-like, H3TH domain YPN_0244 IPR002421 5'-3' exonuclease, N-terminal YPN_0244 IPR002562 3'-5' exonuclease domain YPN_0244 IPR018320 DNA polymerase 1 YPN_0244 IPR036279 5'-3' exonuclease, C-terminal domain superfamily YPN_0244 IPR036397 Ribonuclease H superfamily YPN_0244 IPR012337 Ribonuclease H-like superfamily YPN_0244 IPR029060 PIN-like domain superfamily YPN_0244 IPR001098 DNA-directed DNA polymerase, family A, palm domain YPN_0244 IPR008918 Helix-hairpin-helix motif, class 2 YPN_0244 IPR002298 DNA polymerase A YPN_0244 IPR019760 DNA-directed DNA polymerase, family A, conserved site YPN_0244 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal YPN_0245 IPR036515 Transposase IS200-like superfamily YPN_0245 IPR002686 Transposase IS200-like YPN_0246 IPR030393 EngB-type guanine nucleotide-binding (G) domain YPN_0246 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC YPN_0246 IPR006073 GTP binding domain YPN_0246 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0247 IPR007336 Der GTPase activator YPN_0248 IPR034505 Anaerobic coproporphyrinogen-III oxidase YPN_0248 IPR023404 Radical SAM, alpha/beta horseshoe YPN_0248 IPR006638 Elp3/MiaB/NifB YPN_0248 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN YPN_0248 IPR007197 Radical SAM YPN_0248 IPR010723 HemN, C-terminal YPN_0249 IPR010114 DNA-binding transcriptional regulator NtrC YPN_0249 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPN_0249 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPN_0249 IPR002078 RNA polymerase sigma factor 54 interaction domain YPN_0249 IPR001789 Signal transduction response regulator, receiver domain YPN_0249 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0249 IPR025944 Sigma-54 interaction domain, conserved site YPN_0249 IPR011006 CheY-like superfamily YPN_0249 IPR003593 AAA+ ATPase domain YPN_0249 IPR009057 Homeobox-like domain superfamily YPN_0249 IPR002197 DNA binding HTH domain, Fis-type YPN_0250 IPR000014 PAS domain YPN_0250 IPR005467 Histidine kinase domain YPN_0250 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPN_0250 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPN_0250 IPR013767 PAS fold YPN_0250 IPR003594 Histidine kinase/HSP90-like ATPase YPN_0250 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPN_0250 IPR035965 PAS domain superfamily YPN_0250 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_0251 IPR027302 Glutamine synthetase, N-terminal conserved site YPN_0251 IPR001637 Glutamine synthetase class-I, adenylation site YPN_0251 IPR004809 Glutamine synthetase type I YPN_0251 IPR027303 Glutamine synthetase, glycine-rich site YPN_0251 IPR008146 Glutamine synthetase, catalytic domain YPN_0251 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain YPN_0251 IPR036651 Glutamine synthetase, N-terminal domain superfamily YPN_0251 IPR008147 Glutamine synthetase, beta-Grasp domain YPN_0253 IPR006439 HAD hydrolase, subfamily IA YPN_0253 IPR041492 Haloacid dehalogenase-like hydrolase YPN_0253 IPR023214 HAD superfamily YPN_0253 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPN_0253 IPR036412 HAD-like superfamily YPN_0254 IPR017039 Virulence factor BrkB YPN_0254 IPR023679 Uncharacterised protein family UPF0761, bacterial YPN_0255 IPR003732 D-aminoacyl-tRNA deacylase DTD YPN_0255 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily YPN_0256 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_0256 IPR001270 ClpA/B family YPN_0256 IPR003593 AAA+ ATPase domain YPN_0256 IPR002611 IstB-like ATP-binding protein YPN_0256 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0257 IPR017894 HTH domain, IS21 transposase-type YPN_0257 IPR006120 Resolvase, HTH domain YPN_0257 IPR036397 Ribonuclease H superfamily YPN_0257 IPR001584 Integrase, catalytic core YPN_0257 IPR012337 Ribonuclease H-like superfamily YPN_0258 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0258 IPR021961 Protein of unknown function DUF3578 YPN_0258 IPR011704 ATPase, dynein-related, AAA domain YPN_0258 IPR003593 AAA+ ATPase domain YPN_0262 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_0262 IPR017985 DNA methylase, N-4 cytosine-specific, conserved site YPN_0262 IPR002941 DNA methylase N-4/N-6 YPN_0266 IPR017894 HTH domain, IS21 transposase-type YPN_0266 IPR001584 Integrase, catalytic core YPN_0266 IPR012337 Ribonuclease H-like superfamily YPN_0269 IPR010295 Protein of unknown function DUF898 YPN_0271 IPR018060 DNA binding HTH domain, AraC-type YPN_0271 IPR009057 Homeobox-like domain superfamily YPN_0271 IPR018062 HTH domain AraC-type, conserved site YPN_0271 IPR020449 Transcription regulator HTH, AraC- type YPN_0272 IPR036095 PTS system IIB component-like superfamily YPN_0272 IPR013011 Phosphotransferase system, EIIB component, type 2 YPN_0272 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPN_0272 IPR003353 Phosphotransferase system, fructose-specific IIB subunit YPN_0273 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPN_0273 IPR003353 Phosphotransferase system, fructose-specific IIB subunit YPN_0273 IPR036095 PTS system IIB component-like superfamily YPN_0273 IPR013011 Phosphotransferase system, EIIB component, type 2 YPN_0274 IPR013014 Phosphotransferase system, EIIC component, type 2 YPN_0274 IPR006327 Phosphotransferase system, fructose IIC component YPN_0275 IPR035895 HPr-like superfamily YPN_0275 IPR016152 Phosphotransferase/anion transporter YPN_0275 IPR008279 PEP-utilising enzyme, mobile domain YPN_0275 IPR023151 PEP-utilising enzyme, conserved site YPN_0275 IPR018274 PEP-utilising enzyme, active site YPN_0275 IPR000121 PEP-utilising enzyme, C-terminal YPN_0275 IPR006318 Phosphotransferase system, enzyme I-like YPN_0275 IPR000032 Phosphocarrier protein HPr-like YPN_0275 IPR036637 Phosphohistidine domain superfamily YPN_0275 IPR040442 Pyruvate kinase-like domain superfamily YPN_0275 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPN_0275 IPR036618 PtsI, HPr-binding domain superfamily YPN_0275 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YPN_0275 IPR008731 Phosphotransferase system, enzyme I N-terminal YPN_0275 IPR002178 PTS EIIA type-2 domain YPN_0276 IPR019637 Protein of unknown function DUF2501 YPN_0277 IPR033672 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase YPN_0277 IPR011008 Dimeric alpha-beta barrel YPN_0277 IPR007138 Antibiotic biosynthesis monooxygenase domain YPN_0278 IPR033673 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase YPN_0278 IPR041720 Aldolase FbaB-like, archaeal-type YPN_0278 IPR002915 DeoC/FbaB/ lacD aldolase YPN_0278 IPR013785 Aldolase-type TIM barrel YPN_0279 IPR028082 Periplasmic binding protein-like I YPN_0279 IPR025997 Periplasmic binding protein YPN_0279 IPR030159 Autoinducer 2 ABC transporter, substrate-binding protein LsrB YPN_0280 IPR001851 ABC transporter, permease YPN_0281 IPR001851 ABC transporter, permease YPN_0282 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0282 IPR030281 Autoinducer 2 import ATP-binding protein LsrA YPN_0282 IPR017871 ABC transporter, conserved site YPN_0282 IPR003593 AAA+ ATPase domain YPN_0282 IPR003439 ABC transporter-like YPN_0284 IPR037171 NagB/RpiA transferase-like YPN_0284 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0284 IPR012318 Crp-type HTH domain YPN_0284 IPR007324 Sugar-binding domain, putative YPN_0285 IPR007324 Sugar-binding domain, putative YPN_0285 IPR037171 NagB/RpiA transferase-like YPN_0285 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0285 IPR012318 Crp-type HTH domain YPN_0286 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPN_0286 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPN_0286 IPR000577 Carbohydrate kinase, FGGY YPN_0286 IPR033676 Autoinducer-2 kinase YPN_0287 IPR011916 Lipopolysaccharide heptosyltransferase III, putative YPN_0287 IPR002201 Glycosyl transferase, family 9 YPN_0290 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPN_0290 IPR006143 RND efflux pump, membrane fusion protein YPN_0291 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPN_0291 IPR001036 Acriflavin resistance protein YPN_0294 IPR000070 Pectinesterase, catalytic YPN_0294 IPR033131 Pectinesterase, Asp active site YPN_0294 IPR011050 Pectin lyase fold/virulence factor YPN_0294 IPR012334 Pectin lyase fold YPN_0295 IPR009050 Globin-like superfamily YPN_0295 IPR029787 Nucleotide cyclase YPN_0295 IPR012292 Globin/Protoglobin YPN_0295 IPR039435 Diguanylate cyclase DosC, globin sensor domain YPN_0295 IPR000160 GGDEF domain YPN_0297 IPR009885 Protein of unknown function DUF1435 YPN_0298 IPR007848 Methyltransferase small domain YPN_0298 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_0298 IPR023543 rRNA small subunit methyltransferase C YPN_0298 IPR013675 Methyltransferase small, N-terminal YPN_0298 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPN_0299 IPR004615 DNA polymerase III, psi subunit YPN_0299 IPR036654 DNA polymerase III, psi subunit superfamily YPN_0299 IPR018382 DNA polymerase III, psi subunit, subgroup YPN_0300 IPR000182 GNAT domain YPN_0300 IPR016181 Acyl-CoA N-acyltransferase YPN_0300 IPR006464 N-acetyltransferase RimI/Ard1 YPN_0301 IPR004548 Peptide chain release factor 3 YPN_0301 IPR009000 Translation protein, beta-barrel domain superfamily YPN_0301 IPR041732 Peptide chain release factor 3, GTP-binding domain YPN_0301 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily YPN_0301 IPR032090 Peptide chain release factor 3, C-terminal YPN_0301 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0301 IPR031157 Tr-type G domain, conserved site YPN_0301 IPR004161 Translation elongation factor EFTu-like, domain 2 YPN_0301 IPR035647 EF-G domain III/V-like YPN_0301 IPR000795 Transcription factor, GTP-binding domain YPN_0301 IPR005225 Small GTP-binding protein domain YPN_0302 IPR014004 Transport-associated and nodulation domain, bacteria YPN_0302 IPR007055 BON domain YPN_0303 IPR009760 Protein of unknown function DUF1328 YPN_0304 IPR037483 YjjU-like YPN_0304 IPR002641 Patatin-like phospholipase domain YPN_0304 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPN_0305 IPR018228 Deoxyribonuclease, TatD-related, conserved site YPN_0305 IPR032466 Metal-dependent hydrolase YPN_0305 IPR001130 TatD family YPN_0306 IPR002668 Concentrative nucleoside transporter N-terminal domain YPN_0306 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain YPN_0306 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial YPN_0306 IPR008276 Concentrative nucleoside transporter YPN_0306 IPR011657 Concentrative nucleoside transporter C-terminal domain YPN_0307 IPR011343 Deoxyribose-phosphate aldolase YPN_0307 IPR013785 Aldolase-type TIM barrel YPN_0307 IPR002915 DeoC/FbaB/ lacD aldolase YPN_0307 IPR023649 Deoxyribose-phosphate aldolase type II YPN_0308 IPR000312 Glycosyl transferase, family 3 YPN_0308 IPR017459 Glycosyl transferase family 3, N-terminal domain YPN_0308 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic YPN_0308 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal YPN_0308 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily YPN_0308 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily YPN_0308 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily YPN_0308 IPR013465 Thymidine phosphorylase YPN_0308 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase YPN_0308 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site YPN_0309 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase YPN_0309 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic YPN_0309 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site YPN_0309 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal YPN_0309 IPR000312 Glycosyl transferase, family 3 YPN_0309 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily YPN_0309 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily YPN_0309 IPR017459 Glycosyl transferase family 3, N-terminal domain YPN_0309 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily YPN_0309 IPR013465 Thymidine phosphorylase YPN_0310 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPN_0310 IPR010045 Phosphopentomutase YPN_0310 IPR006124 Metalloenzyme YPN_0310 IPR024052 Phosphopentomutase DeoB cap domain superfamily YPN_0311 IPR035994 Nucleoside phosphorylase superfamily YPN_0311 IPR000845 Nucleoside phosphorylase domain YPN_0311 IPR018016 Nucleoside phosphorylase, conserved site YPN_0311 IPR004402 Purine nucleoside phosphorylase DeoD-type YPN_0312 IPR019305 Uncharacterised protein family Smp YPN_0313 IPR023190 Phosphoserine phosphatase, domain 2 YPN_0313 IPR036412 HAD-like superfamily YPN_0313 IPR023214 HAD superfamily YPN_0313 IPR041449 Phosphoserine phosphatase, N-terminal YPN_0314 IPR003593 AAA+ ATPase domain YPN_0314 IPR004504 DNA repair protein RadA YPN_0314 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain YPN_0314 IPR020568 Ribosomal protein S5 domain 2-type fold YPN_0314 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPN_0314 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0314 IPR041166 LapB, rubredoxin metal binding domain YPN_0315 IPR041749 NadR, nicotinamide/nicotinate mononucleotide adenylyltransferase domain YPN_0315 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPN_0315 IPR016429 NAD biosynthesis/regulator protein NadR YPN_0315 IPR006417 Nicotinamide-nucleotide adenylyltransferase YPN_0315 IPR038727 NadR/Ttd14, AAA domain YPN_0315 IPR004821 Cytidyltransferase-like domain YPN_0315 IPR001387 Cro/C1-type helix-turn-helix domain YPN_0315 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0315 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_0317 IPR032781 ABC-transporter extension domain YPN_0317 IPR003593 AAA+ ATPase domain YPN_0317 IPR022374 Energy-dependent translational throttle protein EttA YPN_0317 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0317 IPR003439 ABC transporter-like YPN_0317 IPR017871 ABC transporter, conserved site YPN_0318 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0318 IPR003593 AAA+ ATPase domain YPN_0318 IPR032781 ABC-transporter extension domain YPN_0318 IPR003439 ABC transporter-like YPN_0318 IPR017871 ABC transporter, conserved site YPN_0318 IPR022374 Energy-dependent translational throttle protein EttA YPN_0319 IPR036737 OmpA-like domain superfamily YPN_0319 IPR006665 OmpA-like domain YPN_0319 IPR006664 Outer membrane protein, bacterial YPN_0320 IPR029787 Nucleotide cyclase YPN_0320 IPR003660 HAMP domain YPN_0320 IPR000160 GGDEF domain YPN_0320 IPR033417 Periplasmic sensor domain CHASE8 YPN_0322 IPR023298 P-type ATPase, transmembrane domain superfamily YPN_0322 IPR001757 P-type ATPase YPN_0322 IPR018303 P-type ATPase, phosphorylation site YPN_0322 IPR023299 P-type ATPase, cytoplasmic domain N YPN_0322 IPR004014 Cation-transporting P-type ATPase, N-terminal YPN_0322 IPR023214 HAD superfamily YPN_0322 IPR008250 P-type ATPase, A domain superfamily YPN_0322 IPR006068 Cation-transporting P-type ATPase, C-terminal YPN_0322 IPR036412 HAD-like superfamily YPN_0323 IPR012289 Lytic transglycosylase, superhelical linker YPN_0323 IPR000189 Prokaryotic transglycosylase, active site YPN_0323 IPR037061 Lytic transglycosylase, superhelical linker domain superfamily YPN_0323 IPR008258 Transglycosylase SLT domain 1 YPN_0323 IPR023346 Lysozyme-like domain superfamily YPN_0323 IPR008939 Lytic transglycosylase, superhelical U-shaped YPN_0324 IPR010921 Trp repressor/replication initiator YPN_0324 IPR013335 Trp repressor, bacterial YPN_0324 IPR038116 TrpR-like superfamily YPN_0324 IPR000831 Trp repressor YPN_0325 IPR026533 Non-canonical purine NTP phosphatase/PRRC1 YPN_0325 IPR002786 Inosine/xanthosine triphosphatase YPN_0325 IPR029001 Inosine triphosphate pyrophosphatase-like YPN_0326 IPR013078 Histidine phosphatase superfamily, clade-1 YPN_0326 IPR029033 Histidine phosphatase superfamily YPN_0326 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site YPN_0326 IPR023086 Phosphoglycerate mutase, GpmB, probable YPN_0327 IPR009057 Homeobox-like domain superfamily YPN_0327 IPR011256 Regulatory factor, effector binding domain superfamily YPN_0327 IPR010499 Bacterial transcription activator, effector binding YPN_0327 IPR018062 HTH domain AraC-type, conserved site YPN_0327 IPR029442 GyrI-like small molecule binding domain YPN_0327 IPR018060 DNA binding HTH domain, AraC-type YPN_0327 IPR020449 Transcription regulator HTH, AraC- type YPN_0328 IPR010292 Uncharacterised protein family CreA YPN_0329 IPR016032 Signal transduction response regulator, C-terminal effector YPN_0329 IPR001789 Signal transduction response regulator, receiver domain YPN_0329 IPR001867 OmpR/PhoB-type DNA-binding domain YPN_0329 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0329 IPR039420 Transcriptional regulatory protein WalR-like YPN_0329 IPR011006 CheY-like superfamily YPN_0331 IPR019811 Homoserine dehydrogenase, conserved site YPN_0331 IPR027795 CASTOR, ACT domain YPN_0331 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I YPN_0331 IPR018042 Aspartate kinase, conserved site YPN_0331 IPR001341 Aspartate kinase YPN_0331 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding YPN_0331 IPR036393 Acetylglutamate kinase-like superfamily YPN_0331 IPR036291 NAD(P)-binding domain superfamily YPN_0331 IPR001048 Aspartate/glutamate/uridylate kinase YPN_0331 IPR041743 Bifunctional aspartokinase/homoserine dehydrogenase, N-terminal catalytic domain YPN_0331 IPR001342 Homoserine dehydrogenase, catalytic YPN_0331 IPR002912 ACT domain YPN_0332 IPR006203 GHMP kinase, ATP-binding, conserved site YPN_0332 IPR013750 GHMP kinase, C-terminal domain YPN_0332 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPN_0332 IPR036554 GHMP kinase, C-terminal domain superfamily YPN_0332 IPR006204 GHMP kinase N-terminal domain YPN_0332 IPR020568 Ribosomal protein S5 domain 2-type fold YPN_0332 IPR000870 Homoserine kinase YPN_0333 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site YPN_0333 IPR029144 Threonine synthase, N-terminal YPN_0333 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPN_0333 IPR004450 Threonine synthase-like YPN_0333 IPR037158 Threonine synthase, N-terminal domain superfamily YPN_0333 IPR001926 Pyridoxal-phosphate dependent enzyme YPN_0334 IPR005583 Peroxide stress protein YaaA YPN_0335 IPR001585 Transaldolase/Fructose-6-phosphate aldolase YPN_0335 IPR018225 Transaldolase, active site YPN_0335 IPR013785 Aldolase-type TIM barrel YPN_0335 IPR004730 Transaldolase type 1 YPN_0337 IPR008284 Molybdenum cofactor biosynthesis, conserved site YPN_0337 IPR036425 MoaB/Mog-like domain superfamily YPN_0337 IPR001453 MoaB/Mog domain YPN_0338 IPR036259 MFS transporter superfamily YPN_0338 IPR005829 Sugar transporter, conserved site YPN_0338 IPR020846 Major facilitator superfamily domain YPN_0338 IPR011701 Major facilitator superfamily YPN_0340 IPR000791 Acetate transporter GPR1/FUN34/SatP family YPN_0341 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily YPN_0341 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily YPN_0341 IPR013126 Heat shock protein 70 family YPN_0341 IPR012725 Chaperone DnaK YPN_0341 IPR018181 Heat shock protein 70, conserved site YPN_0342 IPR036869 Chaperone J-domain superfamily YPN_0342 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily YPN_0342 IPR001305 Heat shock protein DnaJ, cysteine-rich domain YPN_0342 IPR008971 HSP40/DnaJ peptide-binding YPN_0342 IPR018253 DnaJ domain, conserved site YPN_0342 IPR002939 Chaperone DnaJ, C-terminal YPN_0342 IPR012724 Chaperone DnaJ YPN_0342 IPR001623 DnaJ domain YPN_0343 IPR023171 Na/H antiporter domain superfamily YPN_0343 IPR004670 Na+/H+ antiporter NhaA YPN_0344 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0344 IPR000847 Transcription regulator HTH, LysR YPN_0344 IPR005119 LysR, substrate-binding YPN_0344 IPR036390 Winged helix DNA-binding domain superfamily YPN_0345 IPR002583 Ribosomal protein S20 YPN_0345 IPR036510 Ribosomal protein S20 superfamily YPN_0346 IPR015864 FAD synthetase YPN_0346 IPR023468 Riboflavin kinase YPN_0346 IPR002606 Riboflavin kinase, bacterial YPN_0346 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic YPN_0346 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_0346 IPR023465 Riboflavin kinase domain superfamily YPN_0347 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_0347 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPN_0347 IPR002300 Aminoacyl-tRNA synthetase, class Ia YPN_0347 IPR033708 Isoleucyl tRNA synthetase type 1, anticodon-binding domain YPN_0347 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YPN_0347 IPR002301 Isoleucine-tRNA ligase YPN_0347 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding YPN_0347 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain YPN_0347 IPR023585 Isoleucine-tRNA ligase, type 1 YPN_0347 IPR010663 Zinc finger, FPG/IleRS-type YPN_0348 IPR001872 Peptidase A8, signal peptidase II YPN_0349 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YPN_0350 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YPN_0352 IPR036515 Transposase IS200-like superfamily YPN_0352 IPR002686 Transposase IS200-like YPN_0353 IPR022664 Dihydrodipicolinate reductase, conserved site YPN_0353 IPR000846 Dihydrodipicolinate reductase, N-terminal YPN_0353 IPR022663 Dihydrodipicolinate reductase, C-terminal YPN_0353 IPR036291 NAD(P)-binding domain superfamily YPN_0353 IPR023940 Dihydrodipicolinate reductase YPN_0354 IPR017926 Glutamine amidotransferase YPN_0354 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain YPN_0354 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily YPN_0354 IPR006274 Carbamoyl-phosphate synthase, small subunit YPN_0354 IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain YPN_0354 IPR029062 Class I glutamine amidotransferase-like YPN_0355 IPR006275 Carbamoyl-phosphate synthase, large subunit YPN_0355 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily YPN_0355 IPR011607 Methylglyoxal synthase-like domain YPN_0355 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain YPN_0355 IPR016185 Pre-ATP-grasp domain superfamily YPN_0355 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain YPN_0355 IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain YPN_0355 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain YPN_0355 IPR011761 ATP-grasp fold YPN_0355 IPR036914 Methylglyoxal synthase-like domain superfamily YPN_0356 IPR004778 Homoserine/Threonine efflux protein YPN_0356 IPR001123 Amino acid exporter protein, LeuE-type YPN_0357 IPR010619 Putative threonine/serine exporter YPN_0358 IPR020914 Uncharacterised protein family UPF0442 YPN_0358 IPR024528 Threonine/Serine exporter, ThrE YPN_0359 IPR012259 Dihydrofolate reductase YPN_0359 IPR001796 Dihydrofolate reductase domain YPN_0359 IPR017925 Dihydrofolate reductase conserved site YPN_0359 IPR024072 Dihydrofolate reductase-like domain superfamily YPN_0360 IPR036515 Transposase IS200-like superfamily YPN_0360 IPR002686 Transposase IS200-like YPN_0364 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPN_0364 IPR029052 Metallo-dependent phosphatase-like YPN_0364 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YPN_0365 IPR023065 Uncharacterised protein family ApaG YPN_0365 IPR036767 ApaG domain superfamily YPN_0365 IPR007474 ApaG domain YPN_0366 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal YPN_0366 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm YPN_0366 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site YPN_0366 IPR011530 Ribosomal RNA adenine dimethylase YPN_0366 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_0366 IPR023165 rRNA adenine dimethylase-like YPN_0367 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase YPN_0367 IPR005255 PdxA family YPN_0368 IPR015391 SurA N-terminal YPN_0368 IPR027304 Trigger factor/SurA domain superfamily YPN_0368 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type YPN_0368 IPR023034 Peptidyl-prolyl isomerase SurA YPN_0369 IPR020889 LPS-assembly protein LptD YPN_0369 IPR007543 LptD, C-terminal YPN_0369 IPR005653 Organic solvent tolerance-like, N-terminal YPN_0370 IPR007791 Co-chaperone DjlA, N-terminal YPN_0370 IPR001623 DnaJ domain YPN_0370 IPR023749 Co-chaperone DjlA YPN_0370 IPR036869 Chaperone J-domain superfamily YPN_0370 IPR029024 TerB-like YPN_0371 IPR006145 Pseudouridine synthase, RsuA/RluA YPN_0371 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPN_0371 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YPN_0381 IPR001270 ClpA/B family YPN_0381 IPR004176 Clp, N-terminal YPN_0381 IPR036628 Clp, N-terminal domain superfamily YPN_0381 IPR019489 Clp ATPase, C-terminal YPN_0381 IPR041546 ClpA/ClpB, AAA lid domain YPN_0381 IPR003593 AAA+ ATPase domain YPN_0381 IPR003959 ATPase, AAA-type, core YPN_0381 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0381 IPR017729 Type VI secretion system, ATPase ClpV1 YPN_0381 IPR018368 ClpA/B, conserved site 1 YPN_0382 IPR037026 Vgr protein, OB-fold domain superfamily YPN_0382 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPN_0382 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPN_0382 IPR006531 Gp5 N-terminal YPN_0389 IPR006664 Outer membrane protein, bacterial YPN_0389 IPR006665 OmpA-like domain YPN_0389 IPR006690 Outer membrane protein, OmpA-like, conserved site YPN_0389 IPR036737 OmpA-like domain superfamily YPN_0389 IPR008722 Outer membrane porin F, N-terminal YPN_0389 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPN_0392 IPR023949 RNA polymerase-associated protein RapA YPN_0392 IPR001650 Helicase, C-terminal YPN_0392 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPN_0392 IPR040765 RapA, N-terminal Tudor like domain 1 YPN_0392 IPR040766 RapA, N-terminal Tudor-like domain 2 YPN_0392 IPR000330 SNF2-related, N-terminal domain YPN_0392 IPR022737 RNA polymerase recycling, bacterial, C-terminal YPN_0392 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0392 IPR038718 SNF2-like, N-terminal domain superfamily YPN_0393 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain YPN_0393 IPR036397 Ribonuclease H superfamily YPN_0393 IPR012337 Ribonuclease H-like superfamily YPN_0393 IPR023211 DNA polymerase, palm domain superfamily YPN_0393 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain YPN_0393 IPR017964 DNA-directed DNA polymerase, family B, conserved site YPN_0393 IPR042087 DNA polymerase family B, C-terminal domain YPN_0393 IPR006172 DNA-directed DNA polymerase, family B YPN_0394 IPR032816 SNARE associated Golgi protein YPN_0394 IPR032818 DedA family YPN_0395 IPR003593 AAA+ ATPase domain YPN_0395 IPR003439 ABC transporter-like YPN_0395 IPR017871 ABC transporter, conserved site YPN_0395 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ YPN_0395 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0396 IPR035906 MetI-like superfamily YPN_0396 IPR005947 Thiamine ABC transporter, permease protein YPN_0396 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_0397 IPR006061 Solute-binding family 1, conserved site YPN_0397 IPR005948 Thiamine/thiamin pyrophosphate-binding periplasmic protein, ABC transporter YPN_0397 IPR005967 Thiamin/thiamin pyrophosphate ABC transporter, substrate-binding protein, Proteobacteria YPN_0398 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain YPN_0398 IPR023767 Transcriptional regulator SgrR YPN_0398 IPR036390 Winged helix DNA-binding domain superfamily YPN_0398 IPR000914 Solute-binding protein family 5 domain YPN_0398 IPR039424 Solute-binding protein family 5 YPN_0399 IPR036259 MFS transporter superfamily YPN_0399 IPR020846 Major facilitator superfamily domain YPN_0399 IPR004750 Sugar efflux YPN_0399 IPR011701 Major facilitator superfamily YPN_0400 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel YPN_0400 IPR004431 3-isopropylmalate dehydratase, small subunit YPN_0400 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain YPN_0400 IPR033940 3-isopropylmalate dehydratase, swivel domain YPN_0401 IPR036008 Aconitase, iron-sulfur domain YPN_0401 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 YPN_0401 IPR004430 3-isopropylmalate dehydratase, large subunit YPN_0401 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain YPN_0401 IPR033941 3-Isopropylmalate dehydratase, catalytic domain YPN_0401 IPR018136 Aconitase family, 4Fe-4S cluster binding site YPN_0402 IPR024084 Isopropylmalate dehydrogenase-like domain YPN_0402 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site YPN_0402 IPR004429 Isopropylmalate dehydrogenase YPN_0403 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain YPN_0403 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site YPN_0403 IPR013785 Aldolase-type TIM barrel YPN_0403 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily YPN_0403 IPR005671 2-isopropylmalate synthase, bacterial-type YPN_0403 IPR000891 Pyruvate carboxyltransferase YPN_0404 IPR002686 Transposase IS200-like YPN_0404 IPR036515 Transposase IS200-like superfamily YPN_0405 IPR005119 LysR, substrate-binding YPN_0405 IPR036390 Winged helix DNA-binding domain superfamily YPN_0405 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0405 IPR000847 Transcription regulator HTH, LysR YPN_0406 IPR020845 AMP-binding, conserved site YPN_0406 IPR000873 AMP-dependent synthetase/ligase YPN_0406 IPR042099 AMP-dependent synthetase-like superfamily YPN_0407 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPN_0407 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPN_0407 IPR012000 Thiamine pyrophosphate enzyme, central domain YPN_0407 IPR029061 Thiamin diphosphate-binding fold YPN_0407 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPN_0407 IPR039368 Acetolactate synthase large subunit, TPP binding domain YPN_0407 IPR012846 Acetolactate synthase, large subunit, biosynthetic YPN_0407 IPR000399 TPP-binding enzyme, conserved site YPN_0408 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal YPN_0408 IPR004789 Acetolactate synthase, small subunit YPN_0408 IPR002912 ACT domain YPN_0408 IPR019455 Acetolactate synthase, small subunit, C-terminal YPN_0408 IPR039557 AHAS, ACT domain YPN_0409 IPR002686 Transposase IS200-like YPN_0409 IPR036515 Transposase IS200-like superfamily YPN_0410 IPR028082 Periplasmic binding protein-like I YPN_0410 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPN_0410 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPN_0410 IPR000843 LacI-type HTH domain YPN_0410 IPR012781 D-fructose-responsive transcription factor YPN_0411 IPR010574 L-alanine exporter AlaE YPN_0412 IPR003444 Transcriptional regulator MraZ YPN_0412 IPR035644 MraZ, C-terminal YPN_0412 IPR020603 MraZ domain YPN_0412 IPR035642 MraZ, N-terminal YPN_0412 IPR038619 MraZ superfamily YPN_0412 IPR007159 SpoVT-AbrB domain YPN_0412 IPR037914 SpoVT-AbrB domain superfamily YPN_0413 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_0413 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily YPN_0413 IPR002903 Ribosomal RNA small subunit methyltransferase H YPN_0414 IPR011922 Cell division protein FtsL YPN_0415 IPR012338 Beta-lactamase/transpeptidase-like YPN_0415 IPR001460 Penicillin-binding protein, transpeptidase YPN_0415 IPR036138 Penicillin-binding protein, dimerisation domain superfamily YPN_0415 IPR005311 Penicillin-binding protein, dimerisation domain YPN_0415 IPR037532 Peptidoglycan D,D-transpeptidase FtsI YPN_0416 IPR036615 Mur ligase, C-terminal domain superfamily YPN_0416 IPR013221 Mur ligase, central YPN_0416 IPR000713 Mur ligase, N-terminal catalytic domain YPN_0416 IPR036565 Mur-like, catalytic domain superfamily YPN_0416 IPR035911 MurE/MurF, N-terminal YPN_0416 IPR004101 Mur ligase, C-terminal YPN_0416 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase YPN_0417 IPR036565 Mur-like, catalytic domain superfamily YPN_0417 IPR036615 Mur ligase, C-terminal domain superfamily YPN_0417 IPR004101 Mur ligase, C-terminal YPN_0417 IPR013221 Mur ligase, central YPN_0417 IPR000713 Mur ligase, N-terminal catalytic domain YPN_0417 IPR035911 MurE/MurF, N-terminal YPN_0417 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase YPN_0418 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase YPN_0418 IPR000715 Glycosyl transferase, family 4 YPN_0418 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site YPN_0419 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase YPN_0419 IPR013221 Mur ligase, central YPN_0419 IPR004101 Mur ligase, C-terminal YPN_0419 IPR036565 Mur-like, catalytic domain superfamily YPN_0419 IPR036615 Mur ligase, C-terminal domain superfamily YPN_0420 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA YPN_0420 IPR013437 Probable peptidoglycan glycosyltransferase FtsW YPN_0420 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site YPN_0421 IPR007235 Glycosyl transferase, family 28, C-terminal YPN_0421 IPR006009 N-acetylglucosaminyltransferase, MurG YPN_0421 IPR004276 Glycosyltransferase family 28, N-terminal domain YPN_0422 IPR004101 Mur ligase, C-terminal YPN_0422 IPR013221 Mur ligase, central YPN_0422 IPR036615 Mur ligase, C-terminal domain superfamily YPN_0422 IPR005758 UDP-N-acetylmuramate--L-alanine ligase YPN_0422 IPR036565 Mur-like, catalytic domain superfamily YPN_0422 IPR000713 Mur ligase, N-terminal catalytic domain YPN_0423 IPR016185 Pre-ATP-grasp domain superfamily YPN_0423 IPR011127 D-alanine--D-alanine ligase, N-terminal domain YPN_0423 IPR011095 D-alanine--D-alanine ligase, C-terminal YPN_0423 IPR005905 D-alanine--D-alanine ligase YPN_0423 IPR011761 ATP-grasp fold YPN_0423 IPR013815 ATP-grasp fold, subdomain 1 YPN_0423 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site YPN_0424 IPR034746 POTRA domain YPN_0424 IPR013685 POTRA domain, FtsQ-type YPN_0424 IPR005548 Cell division protein FtsQ/DivIB YPN_0424 IPR026579 Cell division protein FtsQ YPN_0425 IPR020823 Cell division protein FtsA YPN_0425 IPR003494 SHS2 domain inserted in FtsA YPN_0426 IPR008280 Tubulin/FtsZ, C-terminal YPN_0426 IPR003008 Tubulin/FtsZ, GTPase domain YPN_0426 IPR036525 Tubulin/FtsZ, GTPase domain superfamily YPN_0426 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain YPN_0426 IPR024757 Cell division protein FtsZ, C-terminal YPN_0426 IPR020805 Cell division protein FtsZ, conserved site YPN_0426 IPR000158 Cell division protein FtsZ YPN_0427 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal YPN_0427 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase YPN_0427 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal YPN_0427 IPR020568 Ribosomal protein S5 domain 2-type fold YPN_0429 IPR009502 Secretion monitor YPN_0430 IPR000185 Protein translocase subunit SecA YPN_0430 IPR036670 SecA, preprotein cross-linking domain superfamily YPN_0430 IPR036266 SecA, Wing/Scaffold superfamily YPN_0430 IPR011116 SecA Wing/Scaffold YPN_0430 IPR011130 SecA, preprotein cross-linking domain YPN_0430 IPR014018 SecA motor DEAD YPN_0430 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0430 IPR011115 SecA DEAD-like, N-terminal YPN_0430 IPR020937 SecA conserved site YPN_0430 IPR004027 SEC-C motif YPN_0431 IPR015797 NUDIX hydrolase-like domain superfamily YPN_0431 IPR020084 NUDIX hydrolase, conserved site YPN_0431 IPR000086 NUDIX hydrolase domain YPN_0431 IPR020476 NUDIX hydrolase YPN_0431 IPR003561 Mutator MutT YPN_0433 IPR002611 IstB-like ATP-binding protein YPN_0433 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0433 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_0433 IPR001270 ClpA/B family YPN_0433 IPR003593 AAA+ ATPase domain YPN_0434 IPR036397 Ribonuclease H superfamily YPN_0434 IPR017894 HTH domain, IS21 transposase-type YPN_0434 IPR012337 Ribonuclease H-like superfamily YPN_0434 IPR006120 Resolvase, HTH domain YPN_0434 IPR001584 Integrase, catalytic core YPN_0435 IPR040079 Glutathione Transferase family YPN_0435 IPR010987 Glutathione S-transferase, C-terminal-like YPN_0435 IPR016639 Glutathione S-transferase Omega/GSH YPN_0435 IPR036249 Thioredoxin-like superfamily YPN_0435 IPR004045 Glutathione S-transferase, N-terminal YPN_0435 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YPN_0436 IPR032808 DoxX family YPN_0438 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III YPN_0439 IPR010279 Inner membrane protein YqjD/ElaB YPN_0442 IPR027398 SecD export protein N-terminal TM domain YPN_0442 IPR026574 Modulator protein MzrA YPN_0443 IPR032816 SNARE associated Golgi protein YPN_0443 IPR032818 DedA family YPN_0445 IPR011711 GntR, C-terminal YPN_0445 IPR000524 Transcription regulator HTH, GntR YPN_0445 IPR008920 Transcription regulator FadR/GntR, C-terminal YPN_0445 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0445 IPR036390 Winged helix DNA-binding domain superfamily YPN_0446 IPR036259 MFS transporter superfamily YPN_0446 IPR020846 Major facilitator superfamily domain YPN_0446 IPR011701 Major facilitator superfamily YPN_0447 IPR003766 Uronate isomerase YPN_0447 IPR032466 Metal-dependent hydrolase YPN_0448 IPR032466 Metal-dependent hydrolase YPN_0448 IPR003766 Uronate isomerase YPN_0449 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPN_0449 IPR036291 NAD(P)-binding domain superfamily YPN_0449 IPR013131 Mannitol dehydrogenase, N-terminal YPN_0449 IPR013118 Mannitol dehydrogenase, C-terminal YPN_0449 IPR023668 Altronate oxidoreductase YPN_0449 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPN_0450 IPR013974 SAF domain YPN_0450 IPR007392 D-galactarate/Altronate dehydratase, C-terminal YPN_0451 IPR019629 Uncharacterised protein family HI1736/YgjV YPN_0451 IPR026267 Inner membrane protein YgjV YPN_0452 IPR002686 Transposase IS200-like YPN_0452 IPR036515 Transposase IS200-like superfamily YPN_0453 IPR036458 Sodium:dicarboxylate symporter superfamily YPN_0453 IPR023025 Serine/threonine transporter SstT YPN_0453 IPR001991 Sodium:dicarboxylate symporter YPN_0454 IPR000683 Oxidoreductase, N-terminal YPN_0454 IPR036291 NAD(P)-binding domain superfamily YPN_0455 IPR002725 Protein of unknown function DUF45 YPN_0456 IPR011050 Pectin lyase fold/virulence factor YPN_0456 IPR006315 Outer membrane autotransporter barrel YPN_0456 IPR036709 Autotransporter beta-domain superfamily YPN_0456 IPR005546 Autotransporter beta-domain YPN_0457 IPR007848 Methyltransferase small domain YPN_0457 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_0457 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD YPN_0457 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPN_0458 IPR023753 FAD/NAD(P)-binding domain YPN_0458 IPR013785 Aldolase-type TIM barrel YPN_0458 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_0458 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal YPN_0459 IPR005325 Protein of unknown function DUF308, membrane YPN_0462 IPR036465 von Willebrand factor A-like domain superfamily YPN_0462 IPR011392 Tellurite resistance, TerY YPN_0462 IPR002035 von Willebrand factor, type A YPN_0464 IPR003325 TerD domain YPN_0465 IPR011392 Tellurite resistance, TerY YPN_0465 IPR002035 von Willebrand factor, type A YPN_0465 IPR036465 von Willebrand factor A-like domain superfamily YPN_0466 IPR005565 Haemolysin activator HlyB, C-terminal YPN_0466 IPR013686 Polypeptide-transport-associated, ShlB-type YPN_0466 IPR035251 ShlB, POTRA domain YPN_0466 IPR027282 Two partner secretion pathway transporter YPN_0466 IPR034746 POTRA domain YPN_0467 IPR025157 Hemagglutinin repeat YPN_0467 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPN_0467 IPR006914 VENN motif-containing domain YPN_0467 IPR024973 ESPR domain YPN_0467 IPR011050 Pectin lyase fold/virulence factor YPN_0467 IPR012334 Pectin lyase fold YPN_0467 IPR008638 Filamentous haemagglutinin, N-terminal YPN_0468 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPN_0468 IPR006914 VENN motif-containing domain YPN_0468 IPR011050 Pectin lyase fold/virulence factor YPN_0468 IPR012334 Pectin lyase fold YPN_0468 IPR025157 Hemagglutinin repeat YPN_0468 IPR008638 Filamentous haemagglutinin, N-terminal YPN_0468 IPR024973 ESPR domain YPN_0472 IPR017871 ABC transporter, conserved site YPN_0472 IPR003439 ABC transporter-like YPN_0472 IPR040582 MalK, OB fold domain YPN_0472 IPR003593 AAA+ ATPase domain YPN_0472 IPR008995 Molybdate/tungstate binding, C-terminal YPN_0472 IPR005116 Transport-associated OB, type 1 YPN_0472 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0473 IPR008928 Six-hairpin glycosidase superfamily YPN_0473 IPR012341 Six-hairpin glycosidase-like superfamily YPN_0473 IPR033432 Glycosyl hydrolase 36, catalytic domain YPN_0474 IPR028082 Periplasmic binding protein-like I YPN_0474 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPN_0474 IPR000843 LacI-type HTH domain YPN_0475 IPR006059 Bacterial extracellular solute-binding protein YPN_0476 IPR035906 MetI-like superfamily YPN_0476 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_0477 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_0477 IPR035906 MetI-like superfamily YPN_0479 IPR002772 Glycoside hydrolase family 3 C-terminal domain YPN_0479 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily YPN_0479 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily YPN_0479 IPR001764 Glycoside hydrolase, family 3, N-terminal YPN_0479 IPR019800 Glycoside hydrolase, family 3, active site YPN_0479 IPR017853 Glycoside hydrolase superfamily YPN_0479 IPR026891 Fibronectin type III-like domain YPN_0479 IPR013783 Immunoglobulin-like fold YPN_0481 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein YPN_0482 IPR030196 Multidrug resistance protein MdtN YPN_0482 IPR005694 Efflux pump membrane protein YPN_0482 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPN_0490 IPR006056 RidA family YPN_0490 IPR019897 RidA, conserved site YPN_0490 IPR035959 RutC-like superfamily YPN_0490 IPR006175 YjgF/YER057c/UK114 family YPN_0494 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0494 IPR000847 Transcription regulator HTH, LysR YPN_0494 IPR036390 Winged helix DNA-binding domain superfamily YPN_0494 IPR005119 LysR, substrate-binding YPN_0503 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0503 IPR013324 RNA polymerase sigma factor, region 3/4-like YPN_0503 IPR013325 RNA polymerase sigma factor, region 2 YPN_0503 IPR042189 Sigma-70 factor, region 1.1 superfamily YPN_0503 IPR007630 RNA polymerase sigma-70 region 4 YPN_0503 IPR007127 RNA polymerase sigma factor 70, region 1.1 YPN_0503 IPR007631 RNA polymerase sigma factor 70, non-essential domain YPN_0503 IPR007624 RNA polymerase sigma-70 region 3 YPN_0503 IPR007627 RNA polymerase sigma-70 region 2 YPN_0503 IPR028630 RNA polymerase sigma factor RpoD YPN_0503 IPR014284 RNA polymerase sigma-70 like domain YPN_0503 IPR000943 RNA polymerase sigma-70 YPN_0503 IPR009042 RNA polymerase sigma-70 region 1.2 YPN_0503 IPR012760 RNA polymerase sigma factor RpoD, C-terminal YPN_0504 IPR036977 DNA Primase, CHC2-type zinc finger YPN_0504 IPR030846 DNA primase DnaG, bacteria YPN_0504 IPR013264 DNA primase, catalytic core, N-terminal YPN_0504 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal YPN_0504 IPR034151 Bacterial DnaG primase, TOPRIM domain YPN_0504 IPR006171 TOPRIM domain YPN_0504 IPR002694 Zinc finger, CHC2-type YPN_0504 IPR006295 DNA primase, DnaG YPN_0504 IPR019475 DNA primase, DnaB-helicase binding domain YPN_0504 IPR013173 DNA primase DnaG, DnaB-binding domain YPN_0504 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily YPN_0505 IPR038380 Ribosomal protein S21 superfamily YPN_0505 IPR001911 Ribosomal protein S21 YPN_0505 IPR018278 Ribosomal protein S21, conserved site YPN_0506 IPR017860 Peptidase M22, conserved site YPN_0506 IPR017861 Kae1/TsaD family YPN_0506 IPR000905 Gcp-like domain YPN_0506 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD YPN_0507 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY YPN_0508 IPR006156 Dihydroneopterin aldolase YPN_0508 IPR006157 Dihydroneopterin aldolase/epimerase domain YPN_0509 IPR003824 Undecaprenyl-diphosphatase UppP YPN_0510 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain YPN_0510 IPR006674 HD domain YPN_0510 IPR003607 HD/PDEase domain YPN_0510 IPR002646 Poly A polymerase, head domain YPN_0510 IPR012006 tRNA nucleotidyltransferase, proteobacteria YPN_0511 IPR016476 SH3 domain protein YPN_0511 IPR003646 SH3-like domain, bacterial-type YPN_0512 IPR023577 CYTH domain YPN_0512 IPR039013 Inorganic triphosphatase YgiF YPN_0512 IPR033469 CYTH-like domain superfamily YPN_0512 IPR007899 CHAD domain YPN_0513 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme YPN_0513 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase YPN_0513 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain YPN_0514 IPR023030 Bifunctional protein HldE YPN_0514 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPN_0514 IPR011611 Carbohydrate kinase PfkB YPN_0514 IPR011913 RfaE bifunctional protein, domain I YPN_0514 IPR029056 Ribokinase-like YPN_0514 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_0514 IPR004821 Cytidyltransferase-like domain YPN_0514 IPR011914 RfaE bifunctional protein, domain II YPN_0515 IPR002293 Amino acid/polyamine transporter I YPN_0516 IPR007475 Ubiquinone biosynthesis accessory factor UbiK YPN_0517 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB YPN_0517 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily YPN_0518 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type YPN_0518 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B YPN_0519 IPR016185 Pre-ATP-grasp domain superfamily YPN_0519 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain YPN_0520 IPR009576 Biofilm formation YgiB YPN_0521 IPR010130 Type I secretion outer membrane protein, TolC YPN_0521 IPR003423 Outer membrane efflux protein YPN_0522 IPR000086 NUDIX hydrolase domain YPN_0522 IPR015797 NUDIX hydrolase-like domain superfamily YPN_0522 IPR004385 Nucleoside diphosphate pyrophosphatase YPN_0522 IPR020084 NUDIX hydrolase, conserved site YPN_0523 IPR009659 Protein of unknown function DUF1249 YPN_0524 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPN_0524 IPR029052 Metallo-dependent phosphatase-like YPN_0524 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA YPN_0525 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA YPN_0525 IPR029058 Alpha/Beta hydrolase fold YPN_0526 IPR006171 TOPRIM domain YPN_0526 IPR002288 DNA gyrase B subunit, C-terminal YPN_0526 IPR018522 DNA topoisomerase, type IIA, conserved site YPN_0526 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative YPN_0526 IPR003594 Histidine kinase/HSP90-like ATPase YPN_0526 IPR013760 DNA topoisomerase, type IIA-like domain superfamily YPN_0526 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 YPN_0526 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPN_0526 IPR020568 Ribosomal protein S5 domain 2-type fold YPN_0526 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_0526 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal YPN_0526 IPR001241 DNA topoisomerase, type IIA YPN_0527 IPR036390 Winged helix DNA-binding domain superfamily YPN_0527 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0527 IPR005119 LysR, substrate-binding YPN_0527 IPR000847 Transcription regulator HTH, LysR YPN_0528 IPR003680 Flavodoxin-like fold YPN_0528 IPR029039 Flavoprotein-like superfamily YPN_0529 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat YPN_0529 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal YPN_0529 IPR013760 DNA topoisomerase, type IIA-like domain superfamily YPN_0529 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily YPN_0529 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative YPN_0529 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal YPN_0529 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta YPN_0530 IPR002123 Phospholipid/glycerol acyltransferase YPN_0530 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase YPN_0531 IPR008972 Cupredoxin YPN_0531 IPR011707 Multicopper oxidase, type 3 YPN_0531 IPR006311 Twin-arginine translocation pathway, signal sequence YPN_0531 IPR011706 Multicopper oxidase, type 2 YPN_0531 IPR026589 Cell division protein FtsP YPN_0532 IPR007197 Radical SAM YPN_0532 IPR020612 Methylthiotransferase, conserved site YPN_0532 IPR023404 Radical SAM, alpha/beta horseshoe YPN_0532 IPR022946 Uncharacterised protein family UPF0313 YPN_0532 IPR024560 Uncharacterised protein family UPF0313, C-terminal YPN_0532 IPR013704 Uncharacterised protein family UPF0313, N-terminal YPN_0532 IPR006638 Elp3/MiaB/NifB YPN_0533 IPR006638 Elp3/MiaB/NifB YPN_0533 IPR024560 Uncharacterised protein family UPF0313, C-terminal YPN_0533 IPR022946 Uncharacterised protein family UPF0313 YPN_0533 IPR007197 Radical SAM YPN_0533 IPR020612 Methylthiotransferase, conserved site YPN_0533 IPR023404 Radical SAM, alpha/beta horseshoe YPN_0533 IPR013704 Uncharacterised protein family UPF0313, N-terminal YPN_0534 IPR036812 NADP-dependent oxidoreductase domain superfamily YPN_0534 IPR018170 Aldo/keto reductase, conserved site YPN_0534 IPR020471 Aldo/keto reductase YPN_0534 IPR023210 NADP-dependent oxidoreductase domain YPN_0535 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YPN_0535 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA YPN_0536 IPR009594 Transcription regulator HTH, AraC, N-terminal YPN_0536 IPR018060 DNA binding HTH domain, AraC-type YPN_0536 IPR009057 Homeobox-like domain superfamily YPN_0537 IPR032816 SNARE associated Golgi protein YPN_0537 IPR032818 DedA family YPN_0538 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YPN_0538 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_0538 IPR015424 Pyridoxal phosphate-dependent transferase YPN_0538 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_0538 IPR006233 Cystathionine beta-lyase, bacterial YPN_0539 IPR002898 MotA/TolQ/ExbB proton channel YPN_0539 IPR014164 TonB-system energizer ExbB type-1 YPN_0540 IPR014170 TonB system transport protein ExbD type-1 YPN_0540 IPR003400 Biopolymer transport protein ExbD/TolR YPN_0547 IPR001482 Type II/IV secretion system protein YPN_0547 IPR022399 Helicase/secretion neighbourhood ATPase YPN_0547 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0550 IPR007055 BON domain YPN_0550 IPR001775 GspD/PilQ family YPN_0550 IPR032789 Pilus formation protein, N-terminal YPN_0550 IPR004846 Type II/III secretion system YPN_0550 IPR014004 Transport-associated and nodulation domain, bacteria YPN_0551 IPR001775 GspD/PilQ family YPN_0551 IPR014004 Transport-associated and nodulation domain, bacteria YPN_0551 IPR004846 Type II/III secretion system YPN_0551 IPR032789 Pilus formation protein, N-terminal YPN_0551 IPR007055 BON domain YPN_0555 IPR042186 Outer membrane usher protein FimD, plug domain YPN_0555 IPR037224 PapC, N-terminal domain superfamily YPN_0555 IPR025885 PapC, N-terminal domain YPN_0555 IPR025949 PapC-like, C-terminal domain YPN_0555 IPR018030 Fimbrial membrane usher, conserved site YPN_0555 IPR000015 Outer membrane usher protein YPN_0556 IPR018046 Pili assembly chaperone, conserved site YPN_0556 IPR016148 Pili assembly chaperone, C-terminal YPN_0556 IPR001829 Pili assembly chaperone, bacterial YPN_0556 IPR016147 Pili assembly chaperone, N-terminal YPN_0556 IPR013783 Immunoglobulin-like fold YPN_0556 IPR008962 PapD-like superfamily YPN_0556 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPN_0557 IPR000259 Fimbrial-type adhesion domain YPN_0557 IPR015303 Fimbrial adhesin F17-AG, lectin domain YPN_0557 IPR036937 Fimbrial-type adhesion domain superfamily YPN_0557 IPR008966 Adhesion domain superfamily YPN_0558 IPR002491 ABC transporter periplasmic binding domain YPN_0562 IPR001712 Type III secretion system FHIPEP YPN_0562 IPR006301 Flagellar biosynthesis protein FlhA YPN_0562 IPR025505 FHIPEP conserved site YPN_0562 IPR042196 FHIPEP, domain 4 YPN_0562 IPR042194 FHIPEP, domain 1 YPN_0562 IPR042193 FHIPEP, domain 3 YPN_0563 IPR006301 Flagellar biosynthesis protein FlhA YPN_0563 IPR025505 FHIPEP conserved site YPN_0563 IPR042196 FHIPEP, domain 4 YPN_0563 IPR042194 FHIPEP, domain 1 YPN_0563 IPR001712 Type III secretion system FHIPEP YPN_0563 IPR042193 FHIPEP, domain 3 YPN_0564 IPR006135 Type III secretion system substrate exporter YPN_0564 IPR006136 Flagellar biosynthetic protein FlhB YPN_0564 IPR029025 Type III secretion system substrate exporter, C-terminal YPN_0565 IPR002010 Type III secretion system inner membrane R protein YPN_0565 IPR006303 Flagellar biosynthesis protein FliR YPN_0566 IPR006305 Flagellar biosynthesis protein FliQ YPN_0566 IPR002191 Bacterial export protein family 3 YPN_0567 IPR005837 Flagellar transport protein FliP YPN_0567 IPR005838 Type III secretion system inner membrane P protein YPN_0568 IPR036429 SpoA-like superfamily YPN_0568 IPR001543 Surface presentation of antigen (SpoA) YPN_0568 IPR012826 Flagellar motor switch FliN YPN_0568 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb YPN_0570 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPN_0570 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPN_0570 IPR001789 Signal transduction response regulator, receiver domain YPN_0570 IPR009057 Homeobox-like domain superfamily YPN_0570 IPR003593 AAA+ ATPase domain YPN_0570 IPR011006 CheY-like superfamily YPN_0570 IPR002078 RNA polymerase sigma factor 54 interaction domain YPN_0570 IPR025944 Sigma-54 interaction domain, conserved site YPN_0570 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0570 IPR002197 DNA binding HTH domain, Fis-type YPN_0571 IPR001624 Flagellar hook-basal body complex protein FliE YPN_0572 IPR013556 Flagellar M-ring C-terminal YPN_0572 IPR000067 Flagellar M-ring protein FliF YPN_0572 IPR006182 Secretory protein YscJ/FliF YPN_0575 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPN_0575 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0575 IPR003593 AAA+ ATPase domain YPN_0575 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPN_0575 IPR040627 T3SS EscN ATPase, C-terminal YPN_0575 IPR032463 ATPase, type III secretion system, FliI YPN_0575 IPR005714 ATPase, type III secretion system, FliI/YscN YPN_0575 IPR020005 Flagellar export ATPase FliI, clade 1 YPN_0579 IPR013974 SAF domain YPN_0579 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal YPN_0579 IPR039246 Flagellar protein FlgA YPN_0580 IPR019776 Flagellar basal body rod protein, conserved site YPN_0580 IPR001444 Flagellar basal body rod protein, N-terminal YPN_0580 IPR006300 Flagellar basal-body rod protein FlgB YPN_0581 IPR006299 Flagellar basal-body rod protein FlgC YPN_0581 IPR019776 Flagellar basal body rod protein, conserved site YPN_0581 IPR001444 Flagellar basal body rod protein, N-terminal YPN_0581 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPN_0582 IPR025965 FlgD Ig-like domain YPN_0582 IPR005648 Flagellar hook capping protein YPN_0582 IPR025963 FlgD Tudor-like domain YPN_0583 IPR019776 Flagellar basal body rod protein, conserved site YPN_0583 IPR011491 Flagellar hook protein FlgE YPN_0583 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPN_0583 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPN_0583 IPR037058 Flagellar hook protein FlgE superfamily YPN_0583 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPN_0583 IPR001444 Flagellar basal body rod protein, N-terminal YPN_0584 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPN_0584 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPN_0584 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPN_0584 IPR001444 Flagellar basal body rod protein, N-terminal YPN_0584 IPR019776 Flagellar basal body rod protein, conserved site YPN_0585 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPN_0585 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPN_0585 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPN_0585 IPR012834 Flagellar basal-body rod FlgG YPN_0585 IPR001444 Flagellar basal body rod protein, N-terminal YPN_0585 IPR019776 Flagellar basal body rod protein, conserved site YPN_0586 IPR000527 Flagellar L-ring protein YPN_0587 IPR001782 Flagellar P-ring protein YPN_0589 IPR002371 Flagellar hook-associated protein 1 YPN_0589 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPN_0589 IPR001444 Flagellar basal body rod protein, N-terminal YPN_0593 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0593 IPR039420 Transcriptional regulatory protein WalR-like YPN_0593 IPR040970 CadC C-terminal domain 1 YPN_0593 IPR001867 OmpR/PhoB-type DNA-binding domain YPN_0593 IPR016032 Signal transduction response regulator, C-terminal effector YPN_0593 IPR011990 Tetratricopeptide-like helical domain superfamily YPN_0594 IPR001492 Flagellin YPN_0594 IPR042187 Flagellin, C-terminal domain, subdomain 2 YPN_0594 IPR001029 Flagellin, D0/D1 domain YPN_0596 IPR025948 HTH-like domain YPN_0596 IPR038965 Transposase InsF-like YPN_0596 IPR001584 Integrase, catalytic core YPN_0596 IPR012337 Ribonuclease H-like superfamily YPN_0596 IPR036397 Ribonuclease H superfamily YPN_0597 IPR027408 PNPase/RNase PH domain superfamily YPN_0597 IPR003029 S1 domain YPN_0597 IPR022967 RNA-binding domain, S1 YPN_0597 IPR020568 Ribosomal protein S5 domain 2-type fold YPN_0597 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain YPN_0597 IPR001247 Exoribonuclease, phosphorolytic domain 1 YPN_0597 IPR015847 Exoribonuclease, phosphorolytic domain 2 YPN_0597 IPR004087 K Homology domain YPN_0597 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily YPN_0597 IPR036345 Exoribonuclease, PH domain 2 superfamily YPN_0597 IPR012162 Polyribonucleotide nucleotidyltransferase YPN_0597 IPR012340 Nucleic acid-binding, OB-fold YPN_0597 IPR036612 K Homology domain, type 1 superfamily YPN_0597 IPR004088 K Homology domain, type 1 YPN_0598 IPR019734 Tetratricopeptide repeat YPN_0598 IPR013105 Tetratricopeptide repeat 2 YPN_0598 IPR011990 Tetratricopeptide-like helical domain superfamily YPN_0598 IPR023605 Lipoprotein NlpI YPN_0598 IPR013026 Tetratricopeptide repeat-containing domain YPN_0599 IPR011545 DEAD/DEAH box helicase domain YPN_0599 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain YPN_0599 IPR034415 CsdA, RNA recognition motif YPN_0599 IPR021046 Cold-shock protein, DEAD box A, C-terminal YPN_0599 IPR028618 ATP-dependent RNA helicase DeaD YPN_0599 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPN_0599 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily YPN_0599 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0599 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPN_0599 IPR014014 RNA helicase, DEAD-box type, Q motif YPN_0599 IPR001650 Helicase, C-terminal YPN_0602 IPR001387 Cro/C1-type helix-turn-helix domain YPN_0602 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPN_0603 IPR011251 Luciferase-like domain YPN_0603 IPR036661 Luciferase-like domain superfamily YPN_0603 IPR019949 Luciferase family oxidoreductase, group 1 YPN_0604 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPN_0604 IPR006143 RND efflux pump, membrane fusion protein YPN_0605 IPR001036 Acriflavin resistance protein YPN_0605 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPN_0605 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 YPN_0606 IPR010131 RND efflux system, outer membrane lipoprotein, NodT YPN_0606 IPR003423 Outer membrane efflux protein YPN_0606 IPR012640 Membrane lipoprotein, lipid attachment site YPN_0611 IPR016181 Acyl-CoA N-acyltransferase YPN_0611 IPR000182 GNAT domain YPN_0612 IPR022992 Uncharacterised protein family UPF0213, GIY-YIG endonuclease YPN_0612 IPR000305 GIY-YIG endonuclease YPN_0612 IPR035901 GIY-YIG endonuclease superfamily YPN_0615 IPR006059 Bacterial extracellular solute-binding protein YPN_0617 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_0617 IPR035906 MetI-like superfamily YPN_0618 IPR005116 Transport-associated OB, type 1 YPN_0618 IPR003593 AAA+ ATPase domain YPN_0618 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0618 IPR017871 ABC transporter, conserved site YPN_0618 IPR008995 Molybdate/tungstate binding, C-terminal YPN_0618 IPR040582 MalK, OB fold domain YPN_0618 IPR003439 ABC transporter-like YPN_0620 IPR011194 Uncharacterised protein family UPF0306 YPN_0620 IPR012349 FMN-binding split barrel YPN_0621 IPR016040 NAD(P)-binding domain YPN_0621 IPR036291 NAD(P)-binding domain superfamily YPN_0621 IPR000534 Semialdehyde dehydrogenase, NAD-binding YPN_0622 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPN_0622 IPR035682 Phosphonate metabolism protein, MBL domain YPN_0622 IPR017693 Phosphonate metabolism protein PhnP YPN_0622 IPR001279 Metallo-beta-lactamase YPN_0623 IPR008145 Guanylate kinase/L-type calcium channel beta subunit YPN_0623 IPR008144 Guanylate kinase-like domain YPN_0623 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0623 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN YPN_0624 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPN_0624 IPR013108 Amidohydrolase 3 YPN_0624 IPR032466 Metal-dependent hydrolase YPN_0624 IPR012696 Phosphonate metabolism PhnM YPN_0625 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0625 IPR003593 AAA+ ATPase domain YPN_0625 IPR003439 ABC transporter-like YPN_0625 IPR017871 ABC transporter, conserved site YPN_0625 IPR012701 Phosphonate C-P lyase system, PhnL YPN_0626 IPR012700 Phosphonate C-P lyase system, PhnK YPN_0626 IPR003593 AAA+ ATPase domain YPN_0626 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0626 IPR017871 ABC transporter, conserved site YPN_0626 IPR003439 ABC transporter-like YPN_0627 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase YPN_0628 IPR008773 Phosphonate metabolism protein PhnI YPN_0629 IPR008772 Bacterial phosphonate metabolism, PhnH YPN_0629 IPR038058 PhnH-like superfamily YPN_0630 IPR008772 Bacterial phosphonate metabolism, PhnH YPN_0630 IPR038058 PhnH-like superfamily YPN_0631 IPR009609 Phosphonate metabolism PhnG YPN_0632 IPR000524 Transcription regulator HTH, GntR YPN_0632 IPR012702 Phosphonate C-P lyase system, transcriptional regulator PhnF YPN_0632 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0632 IPR011663 UbiC transcription regulator-associated YPN_0632 IPR036390 Winged helix DNA-binding domain superfamily YPN_0632 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YPN_0633 IPR013785 Aldolase-type TIM barrel YPN_0633 IPR001989 Radical-activating enzyme, conserved site YPN_0633 IPR034457 Organic radical-activating enzymes YPN_0633 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic YPN_0634 IPR001150 Glycine radical domain YPN_0634 IPR019777 Formate C-acetyltransferase glycine radical, conserved site YPN_0634 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic YPN_0634 IPR005144 ATP-cone domain YPN_0635 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPN_0635 IPR003439 ABC transporter-like YPN_0635 IPR017871 ABC transporter, conserved site YPN_0635 IPR003593 AAA+ ATPase domain YPN_0635 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0636 IPR017871 ABC transporter, conserved site YPN_0636 IPR003593 AAA+ ATPase domain YPN_0636 IPR003439 ABC transporter-like YPN_0636 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPN_0636 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0637 IPR035906 MetI-like superfamily YPN_0637 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_0637 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPN_0638 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_0638 IPR035906 MetI-like superfamily YPN_0641 IPR037012 YhcH/YjgK/YiaL superfamily YPN_0641 IPR004375 YhcH/YjgK/YiaL family YPN_0642 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding YPN_0642 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain YPN_0642 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily YPN_0642 IPR002292 Ornithine/putrescine carbamoyltransferase YPN_0642 IPR006130 Aspartate/ornithine carbamoyltransferase YPN_0642 IPR024904 Ornithine carbamoyltransferase YPN_0643 IPR009671 Regulator of ribonuclease activity B domain YPN_0643 IPR016716 Regulator of ribonuclease activity B YPN_0643 IPR036701 RraB-like superfamily YPN_0644 IPR016181 Acyl-CoA N-acyltransferase YPN_0644 IPR000182 GNAT domain YPN_0645 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPN_0645 IPR002300 Aminoacyl-tRNA synthetase, class Ia YPN_0645 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_0645 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm YPN_0645 IPR002303 Valine-tRNA ligase YPN_0645 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain YPN_0645 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily YPN_0645 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YPN_0645 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding YPN_0645 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm YPN_0645 IPR033705 Valyl tRNA synthetase, anticodon-binding domain YPN_0646 IPR036768 DNA polymerase III subunit chi superfamily YPN_0646 IPR007459 DNA polymerase III chi subunit, HolC YPN_0647 IPR023042 Peptidase M17, leucine aminopeptidase YPN_0647 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal YPN_0647 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal YPN_0647 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B YPN_0648 IPR005495 Permease LptG/LptF-related YPN_0648 IPR030922 LPS export ABC transporter permease LptF YPN_0649 IPR030923 LPS export ABC transporter permease LptG YPN_0649 IPR005495 Permease LptG/LptF-related YPN_0651 IPR013762 Integrase-like, catalytic domain superfamily YPN_0651 IPR025166 Integrase, DNA-binding domain YPN_0651 IPR038488 Integrase, DNA-binding domain superfamily YPN_0651 IPR002104 Integrase, catalytic domain YPN_0651 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPN_0651 IPR010998 Integrase/recombinase, N-terminal YPN_0653 IPR020568 Ribosomal protein S5 domain 2-type fold YPN_0653 IPR014790 MutL, C-terminal, dimerisation YPN_0653 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms YPN_0653 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_0653 IPR013507 DNA mismatch repair protein, S5 domain 2-like YPN_0653 IPR002099 DNA mismatch repair protein family, N-terminal YPN_0653 IPR020667 DNA mismatch repair protein, MutL YPN_0653 IPR014762 DNA mismatch repair, conserved site YPN_0653 IPR037198 MutL, C-terminal domain superfamily YPN_0653 IPR042120 MutL, C-terminal domain, dimerisation subdomain YPN_0653 IPR042121 MutL, C-terminal domain, regulatory subdomain YPN_0653 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPN_0654 IPR003593 AAA+ ATPase domain YPN_0654 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0654 IPR002611 IstB-like ATP-binding protein YPN_0654 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_0654 IPR001270 ClpA/B family YPN_0655 IPR017894 HTH domain, IS21 transposase-type YPN_0655 IPR001584 Integrase, catalytic core YPN_0655 IPR012337 Ribonuclease H-like superfamily YPN_0655 IPR036397 Ribonuclease H superfamily YPN_0655 IPR006120 Resolvase, HTH domain YPN_0657 IPR013088 Zinc finger, NHR/GATA-type YPN_0657 IPR005584 DNA gyrase inhibitor YacG YPN_0658 IPR009777 Cell division protein ZapD YPN_0658 IPR027462 Z ring-associated protein D, C-terminal YPN_0658 IPR036268 ZapD domain superfamily YPN_0659 IPR001977 Dephospho-CoA kinase YPN_0659 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0660 IPR013785 Aldolase-type TIM barrel YPN_0660 IPR005993 GMP reductase YPN_0660 IPR015875 IMP dehydrogenase / GMP reductase, conserved site YPN_0660 IPR001093 IMP dehydrogenase/GMP reductase YPN_0661 IPR001992 Type II secretion system conserved site YPN_0661 IPR018076 Type II secretion system F domain YPN_0661 IPR042094 Type II secretion system F domain superfamily YPN_0661 IPR003004 GspF/PilC family YPN_0662 IPR007831 General secretory system II, protein E, N-terminal YPN_0662 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0662 IPR001482 Type II/IV secretion system protein YPN_0663 IPR012902 Prokaryotic N-terminal methylation site YPN_0664 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal YPN_0664 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal YPN_0664 IPR013785 Aldolase-type TIM barrel YPN_0664 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily YPN_0664 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD YPN_0664 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal YPN_0664 IPR004393 Nicotinate-nucleotide pyrophosphorylase YPN_0665 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily YPN_0665 IPR002502 N-acetylmuramoyl-L-alanine amidase domain YPN_0666 IPR031347 Protein AmpE YPN_0667 IPR004840 Amino acid permease, conserved site YPN_0667 IPR004841 Amino acid permease/ SLC12A domain YPN_0668 IPR000524 Transcription regulator HTH, GntR YPN_0668 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0668 IPR036390 Winged helix DNA-binding domain superfamily YPN_0668 IPR011711 GntR, C-terminal YPN_0668 IPR008920 Transcription regulator FadR/GntR, C-terminal YPN_0669 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II YPN_0669 IPR004660 Pyruvate dehydrogenase E1 component YPN_0669 IPR041621 Pyruvate dehydrogenase E1 component, middle domain YPN_0669 IPR029061 Thiamin diphosphate-binding fold YPN_0669 IPR035807 Pyruvate dehydrogenase E1 component, N-terminal YPN_0669 IPR005474 Transketolase, N-terminal YPN_0670 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain YPN_0670 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site YPN_0670 IPR000089 Biotin/lipoyl attachment YPN_0670 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YPN_0670 IPR036625 E3-binding domain superfamily YPN_0670 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex YPN_0670 IPR011053 Single hybrid motif YPN_0670 IPR004167 Peripheral subunit-binding domain YPN_0671 IPR006258 Dihydrolipoamide dehydrogenase YPN_0671 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_0671 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily YPN_0671 IPR023753 FAD/NAD(P)-binding domain YPN_0671 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site YPN_0671 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPN_0671 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I YPN_0672 IPR002686 Transposase IS200-like YPN_0672 IPR036515 Transposase IS200-like superfamily YPN_0673 IPR015933 Aconitase B, HEAT-like domain YPN_0673 IPR004406 Aconitase B YPN_0673 IPR015932 Aconitase, domain 2 YPN_0673 IPR036008 Aconitase, iron-sulfur domain YPN_0673 IPR015929 Aconitase B, swivel YPN_0673 IPR036288 Aconitase B, HEAT-like domain superfamily YPN_0673 IPR018136 Aconitase family, 4Fe-4S cluster binding site YPN_0673 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 YPN_0673 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel YPN_0673 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain YPN_0674 IPR008249 Uncharacterised protein family UPF0231 YPN_0675 IPR000620 EamA domain YPN_0676 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic YPN_0676 IPR009165 S-adenosylmethionine decarboxylase, bacterial YPN_0676 IPR016067 S-adenosylmethionine decarboxylase, core YPN_0677 IPR030373 Polyamine biosynthesis domain, conserved site YPN_0677 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_0677 IPR030374 Polyamine biosynthesis domain YPN_0677 IPR035246 Spermidine synthase, tetramerisation domain YPN_0677 IPR037163 Spermidine synthase, tetramerisation domain superfamily YPN_0677 IPR001045 Spermidine/spermine synthases YPN_0678 IPR019114 Chaperone lipoprotein, PulS/OutS-like YPN_0678 IPR038432 PulS/OutS-like superfamily YPN_0679 IPR008972 Cupredoxin YPN_0679 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YPN_0679 IPR001117 Multicopper oxidase, type 1 YPN_0679 IPR011706 Multicopper oxidase, type 2 YPN_0679 IPR011707 Multicopper oxidase, type 3 YPN_0679 IPR002355 Multicopper oxidase, copper-binding site YPN_0679 IPR006311 Twin-arginine translocation pathway, signal sequence YPN_0680 IPR029057 Phosphoribosyltransferase-like YPN_0680 IPR000836 Phosphoribosyltransferase domain YPN_0680 IPR005904 Hypoxanthine phosphoribosyl transferase YPN_0681 IPR036874 Carbonic anhydrase superfamily YPN_0681 IPR001765 Carbonic anhydrase YPN_0681 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site YPN_0682 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0682 IPR003439 ABC transporter-like YPN_0682 IPR017871 ABC transporter, conserved site YPN_0682 IPR003593 AAA+ ATPase domain YPN_0683 IPR013525 ABC-2 type transporter YPN_0683 IPR000412 ABC-2 transporter YPN_0685 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPN_0685 IPR002509 NodB homology domain YPN_0686 IPR003190 Aspartate decarboxylase YPN_0686 IPR009010 Aspartate decarboxylase-like domain superfamily YPN_0687 IPR042176 Pantoate-beta-alanine ligase, C-terminal domain YPN_0687 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_0687 IPR003721 Pantoate-beta-alanine ligase YPN_0688 IPR003700 Ketopantoate hydroxymethyltransferase YPN_0688 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPN_0688 IPR040442 Pyruvate kinase-like domain superfamily YPN_0689 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YPN_0689 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily YPN_0690 IPR002646 Poly A polymerase, head domain YPN_0690 IPR010206 Poly(A) polymerase I YPN_0690 IPR025866 Polymerase A arginine-rich C-terminal domain YPN_0690 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain YPN_0691 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_0691 IPR000924 Glutamyl/glutaminyl-tRNA synthetase YPN_0691 IPR022380 Glutamyl-Q tRNA(Asp) synthetase YPN_0691 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain YPN_0693 IPR020458 Zinc finger, DksA/TraR C4-type conserved site YPN_0693 IPR000962 Zinc finger, DksA/TraR C4-type YPN_0693 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria YPN_0693 IPR037187 DksA, N-terminal domain superfamily YPN_0693 IPR012784 RNA polymerase-binding transcription factor DksA YPN_0694 IPR041465 SfsA, N-terminal OB domain YPN_0694 IPR005224 Sugar fermentation stimulation protein YPN_0694 IPR040452 Sugar fermentation stimulation protein, C-terminal YPN_0695 IPR009097 Cyclic phosphodiesterase YPN_0695 IPR014051 Phosphoesterase, HXTX YPN_0695 IPR004175 RNA 2',3'-cyclic phosphodiesterase YPN_0696 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal YPN_0696 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0696 IPR010225 ATP-dependent helicase HrpB YPN_0696 IPR011545 DEAD/DEAH box helicase domain YPN_0696 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPN_0696 IPR001650 Helicase, C-terminal YPN_0696 IPR007502 Helicase-associated domain YPN_0697 IPR001460 Penicillin-binding protein, transpeptidase YPN_0697 IPR032730 Transglycosylase PBP1b, N-terminal transmembrane domain YPN_0697 IPR011813 Penicillin-binding protein 1B YPN_0697 IPR036950 Penicillin binding protein transglycosylase domain YPN_0697 IPR023346 Lysozyme-like domain superfamily YPN_0697 IPR012338 Beta-lactamase/transpeptidase-like YPN_0697 IPR028166 Bifunctional transglycosylase second domain YPN_0697 IPR001264 Glycosyl transferase, family 51 YPN_0698 IPR003439 ABC transporter-like YPN_0698 IPR003593 AAA+ ATPase domain YPN_0698 IPR017871 ABC transporter, conserved site YPN_0698 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0699 IPR002491 ABC transporter periplasmic binding domain YPN_0700 IPR000522 ABC transporter, permease protein, BtuC-like YPN_0700 IPR037294 ABC transporter, BtuC-like YPN_0701 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_0701 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase YPN_0701 IPR005814 Aminotransferase class-III YPN_0701 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_0701 IPR015424 Pyridoxal phosphate-dependent transferase YPN_0702 IPR014743 Chloride channel, core YPN_0702 IPR023861 Chloride channel, ClcA YPN_0702 IPR001807 Chloride channel, voltage gated YPN_0703 IPR016092 FeS cluster insertion protein YPN_0703 IPR017870 FeS cluster insertion, C-terminal, conserved site YPN_0703 IPR023063 FeS cluster insertion protein ErpA YPN_0703 IPR035903 HesB-like domain superfamily YPN_0703 IPR000361 FeS cluster biogenesis YPN_0705 IPR005115 Uncharacterised domain UPF0126 YPN_0706 IPR002491 ABC transporter periplasmic binding domain YPN_0706 IPR023544 ABC transporter, vitamin B12-binding protein YPN_0707 IPR010049 MTA/SAH nucleosidase YPN_0707 IPR000845 Nucleoside phosphorylase domain YPN_0707 IPR035994 Nucleoside phosphorylase superfamily YPN_0708 IPR006261 dNTP triphosphohydrolase YPN_0708 IPR020779 dNTP triphosphohydrolase, type 1 YPN_0708 IPR003607 HD/PDEase domain YPN_0708 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain superfamily YPN_0708 IPR026875 Phosphohydrolase-associated domain YPN_0708 IPR006674 HD domain YPN_0709 IPR009003 Peptidase S1, PA clan YPN_0709 IPR011782 Peptidase S1C, Do YPN_0709 IPR036034 PDZ superfamily YPN_0709 IPR001478 PDZ domain YPN_0709 IPR001940 Peptidase S1C YPN_0710 IPR001789 Signal transduction response regulator, receiver domain YPN_0710 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPN_0710 IPR036641 HPT domain superfamily YPN_0710 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPN_0710 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPN_0710 IPR005467 Histidine kinase domain YPN_0710 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_0710 IPR003594 Histidine kinase/HSP90-like ATPase YPN_0710 IPR003660 HAMP domain YPN_0710 IPR011006 CheY-like superfamily YPN_0710 IPR019247 Histidine kinase BarA, N-terminal YPN_0710 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPN_0712 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD YPN_0712 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_0712 IPR012340 Nucleic acid-binding, OB-fold YPN_0712 IPR030391 RNA methyltransferase TrmA, conserved site YPN_0712 IPR030390 RNA methyltransferase TrmA, active site YPN_0712 IPR010280 (Uracil-5)-methyltransferase family YPN_0712 IPR002792 TRAM domain YPN_0713 IPR012676 TGS-like YPN_0713 IPR004095 TGS YPN_0713 IPR007685 RelA/SpoT YPN_0713 IPR033655 RelA, TGS domain YPN_0713 IPR003607 HD/PDEase domain YPN_0713 IPR012675 Beta-grasp domain superfamily YPN_0713 IPR002912 ACT domain YPN_0713 IPR004811 RelA/SpoT family YPN_0714 IPR011551 NTP pyrophosphohydrolase MazG YPN_0714 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core YPN_0715 IPR033828 CTP synthase GATase domain YPN_0715 IPR029062 Class I glutamine amidotransferase-like YPN_0715 IPR017926 Glutamine amidotransferase YPN_0715 IPR017456 CTP synthase, N-terminal YPN_0715 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0715 IPR004468 CTP synthase YPN_0716 IPR020809 Enolase, conserved site YPN_0716 IPR000941 Enolase YPN_0716 IPR036849 Enolase-like, C-terminal domain superfamily YPN_0716 IPR029017 Enolase-like, N-terminal YPN_0716 IPR020810 Enolase, C-terminal TIM barrel domain YPN_0716 IPR020811 Enolase, N-terminal YPN_0717 IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone YPN_0717 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily YPN_0717 IPR001424 Superoxide dismutase, copper/zinc binding domain YPN_0717 IPR018152 Superoxide dismutase, copper/zinc, binding site YPN_0718 IPR027609 Putative 7-carboxy-7-deazaguanine synthase QueE, Proteobacteria YPN_0718 IPR013785 Aldolase-type TIM barrel YPN_0718 IPR007197 Radical SAM YPN_0718 IPR024924 7-carboxy-7-deazaguanine synthase-like YPN_0719 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily YPN_0719 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family YPN_0720 IPR001094 Flavodoxin-like YPN_0720 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPN_0720 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPN_0720 IPR029039 Flavoprotein-like superfamily YPN_0720 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase YPN_0720 IPR008254 Flavodoxin/nitric oxide synthase YPN_0720 IPR017927 FAD-binding domain, ferredoxin reductase-type YPN_0720 IPR017938 Riboflavin synthase-like beta-barrel YPN_0720 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding YPN_0720 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain YPN_0720 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily YPN_0720 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria YPN_0721 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain YPN_0721 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily YPN_0721 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit YPN_0721 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain YPN_0721 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site YPN_0722 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_0722 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase YPN_0722 IPR011800 Phosphoadenosine phosphosulphate reductase CysH YPN_0722 IPR002500 Phosphoadenosine phosphosulphate reductase YPN_0723 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase YPN_0723 IPR011800 Phosphoadenosine phosphosulphate reductase CysH YPN_0723 IPR002500 Phosphoadenosine phosphosulphate reductase YPN_0723 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_0726 IPR036291 NAD(P)-binding domain superfamily YPN_0726 IPR035996 Tetrapyrrole methylase superfamily YPN_0726 IPR000878 Tetrapyrrole methylase YPN_0726 IPR014777 Tetrapyrrole methylase, subdomain 1 YPN_0726 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site YPN_0726 IPR014776 Tetrapyrrole methylase, subdomain 2 YPN_0726 IPR037115 Sirohaem synthase, dimerisation domain superfamily YPN_0726 IPR019478 Sirohaem synthase, dimerisation domain YPN_0726 IPR006367 Sirohaem synthase, N-terminal YPN_0726 IPR012409 Sirohaem synthase YPN_0726 IPR006366 Uroporphyrin-III C-methyltransferase YPN_0726 IPR028281 Siroheme synthase, central domain YPN_0727 IPR011784 Sulphate adenylyltransferase, small subunit YPN_0727 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_0727 IPR002500 Phosphoadenosine phosphosulphate reductase YPN_0728 IPR031157 Tr-type G domain, conserved site YPN_0728 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0728 IPR005225 Small GTP-binding protein domain YPN_0728 IPR011779 Sulphate adenylyltransferase, large subunit YPN_0728 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPN_0728 IPR009000 Translation protein, beta-barrel domain superfamily YPN_0728 IPR000795 Transcription factor, GTP-binding domain YPN_0728 IPR041757 Sulfate adenylyltransferase subunit CysN, GTP-binding domain YPN_0729 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0729 IPR002891 Adenylyl-sulfate kinase YPN_0730 IPR022721 Protein of unknown function DUF3561 YPN_0731 IPR023081 Cell division protein FtsB YPN_0731 IPR007060 Septum formation initiator FtsL/DivIC YPN_0732 IPR034683 Cytidylyltransferase IspD/TarI YPN_0732 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YPN_0732 IPR029044 Nucleotide-diphospho-sugar transferases YPN_0732 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site YPN_0733 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily YPN_0733 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site YPN_0733 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YPN_0734 IPR011760 Pseudouridine synthase, TruD, insertion domain YPN_0734 IPR020119 Pseudouridine synthase TruD, conserved site YPN_0734 IPR001656 Pseudouridine synthase, TruD YPN_0734 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPN_0734 IPR042214 Pseudouridine synthase, TruD, catalytic domain YPN_0735 IPR002828 Survival protein SurE-like phosphatase/nucleotidase YPN_0735 IPR030048 Survival protein SurE YPN_0735 IPR036523 SurE-like phosphatase/nucleotidase superfamily YPN_0736 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase YPN_0736 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_0737 IPR036779 LysM domain superfamily YPN_0737 IPR016047 Peptidase M23 YPN_0737 IPR018392 LysM domain YPN_0737 IPR011055 Duplicated hybrid motif YPN_0738 IPR000943 RNA polymerase sigma-70 YPN_0738 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0738 IPR014284 RNA polymerase sigma-70 like domain YPN_0738 IPR013324 RNA polymerase sigma factor, region 3/4-like YPN_0738 IPR009042 RNA polymerase sigma-70 region 1.2 YPN_0738 IPR007627 RNA polymerase sigma-70 region 2 YPN_0738 IPR013325 RNA polymerase sigma factor, region 2 YPN_0738 IPR007630 RNA polymerase sigma-70 region 4 YPN_0738 IPR007624 RNA polymerase sigma-70 region 3 YPN_0738 IPR012761 RNA polymerase sigma factor RpoS YPN_0739 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0739 IPR036678 MutS, connector domain superfamily YPN_0739 IPR007860 DNA mismatch repair protein MutS, connector domain YPN_0739 IPR005748 DNA mismatch repair protein MutS YPN_0739 IPR007861 DNA mismatch repair protein MutS, clamp YPN_0739 IPR000432 DNA mismatch repair protein MutS, C-terminal YPN_0739 IPR017261 DNA mismatch repair protein MutS/MSH YPN_0739 IPR007695 DNA mismatch repair protein MutS-like, N-terminal YPN_0739 IPR036187 DNA mismatch repair protein MutS, core domain superfamily YPN_0739 IPR007696 DNA mismatch repair protein MutS, core YPN_0739 IPR016151 DNA mismatch repair protein MutS, N-terminal YPN_0741 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily YPN_0741 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family YPN_0741 IPR004785 Ribose 5-phosphate isomerase B YPN_0742 IPR013149 Alcohol dehydrogenase, C-terminal YPN_0742 IPR013154 Alcohol dehydrogenase, N-terminal YPN_0742 IPR011032 GroES-like superfamily YPN_0742 IPR036291 NAD(P)-binding domain superfamily YPN_0742 IPR020843 Polyketide synthase, enoylreductase domain YPN_0743 IPR036291 NAD(P)-binding domain superfamily YPN_0743 IPR002347 Short-chain dehydrogenase/reductase SDR YPN_0743 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPN_0744 IPR004006 DhaK domain YPN_0745 IPR036117 DhaL domain superfamily YPN_0745 IPR012737 Dihydroxyacetone kinase, subunit L YPN_0745 IPR004007 DhaL domain YPN_0746 IPR037171 NagB/RpiA transferase-like YPN_0746 IPR007324 Sugar-binding domain, putative YPN_0746 IPR009057 Homeobox-like domain superfamily YPN_0746 IPR025246 Transposase IS30-like HTH domain YPN_0746 IPR011991 ArsR-like helix-turn-helix domain YPN_0747 IPR000802 Arsenical pump membrane protein, ArsB YPN_0748 IPR011991 ArsR-like helix-turn-helix domain YPN_0748 IPR001845 HTH ArsR-type DNA-binding domain YPN_0748 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0748 IPR036390 Winged helix DNA-binding domain superfamily YPN_0748 IPR018334 ArsR-type transcription regulator, HTH motif YPN_0750 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPN_0750 IPR018313 Solute-binding protein family 3, conserved site YPN_0750 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YPN_0751 IPR036909 Cytochrome c-like domain superfamily YPN_0751 IPR004852 Di-haem cytochrome c peroxidase YPN_0751 IPR025992 Haem-binding domain YPN_0751 IPR009056 Cytochrome c-like domain YPN_0753 IPR010916 TonB box, conserved site YPN_0753 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPN_0753 IPR010917 TonB-dependent receptor, conserved site YPN_0753 IPR000531 TonB-dependent receptor-like, beta-barrel YPN_0753 IPR037066 TonB-dependent receptor, plug domain superfamily YPN_0753 IPR039426 Vitamin B12 transporter BtuB-like YPN_0753 IPR012910 TonB-dependent receptor, plug domain YPN_0756 IPR036005 Creatinase/aminopeptidase-like YPN_0756 IPR000994 Peptidase M24 YPN_0756 IPR001714 Peptidase M24, methionine aminopeptidase YPN_0756 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 YPN_0758 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily YPN_0758 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain YPN_0758 IPR011167 Iron-dependent fumarate hydratase YPN_0758 IPR020557 Fumarate lyase, conserved site YPN_0758 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain YPN_0759 IPR000577 Carbohydrate kinase, FGGY YPN_0759 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPN_0759 IPR018483 Carbohydrate kinase, FGGY, conserved site YPN_0759 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPN_0760 IPR036237 Xylose isomerase-like superfamily YPN_0760 IPR013022 Xylose isomerase-like, TIM barrel domain YPN_0760 IPR001719 AP endonuclease 2 YPN_0760 IPR004560 L-ribulose-5-phosphate 3-epimerase YPN_0761 IPR001851 ABC transporter, permease YPN_0762 IPR001851 ABC transporter, permease YPN_0763 IPR003439 ABC transporter-like YPN_0763 IPR003593 AAA+ ATPase domain YPN_0763 IPR015861 ABC transporter, ribose import, RbsA YPN_0763 IPR017871 ABC transporter, conserved site YPN_0763 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0764 IPR002686 Transposase IS200-like YPN_0764 IPR036515 Transposase IS200-like superfamily YPN_0766 IPR036390 Winged helix DNA-binding domain superfamily YPN_0766 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0766 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPN_0766 IPR037171 NagB/RpiA transferase-like YPN_0766 IPR001034 DeoR-type HTH domain YPN_0766 IPR014036 DeoR C-terminal sensor domain YPN_0767 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPN_0767 IPR001303 Class II aldolase/adducin N-terminal YPN_0767 IPR033748 L-ribulose-5-phosphate 4-epimerase AraD YPN_0767 IPR004661 L-ribulose-5-phosphate 4-epimerase YPN_0768 IPR009010 Aspartate decarboxylase-like domain superfamily YPN_0768 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPN_0768 IPR006656 Molybdopterin oxidoreductase YPN_0768 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE YPN_0768 IPR006657 Molybdopterin dinucleotide-binding domain YPN_0768 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPN_0768 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPN_0768 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YPN_0768 IPR006311 Twin-arginine translocation pathway, signal sequence YPN_0769 IPR014297 Dimethylsulphoxide reductase, chain B YPN_0769 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPN_0769 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPN_0770 IPR007059 DMSO reductase anchor subunit (DmsC) YPN_0771 IPR020945 DMSO/Nitrate reductase chaperone YPN_0771 IPR036411 TorD-like superfamily YPN_0771 IPR026269 Tat proofreading chaperone DmsD-type YPN_0771 IPR028611 Tat proofreading chaperone DmsD YPN_0772 IPR016174 Di-haem cytochrome, transmembrane YPN_0772 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase YPN_0773 IPR009155 Cytochrome b562 YPN_0773 IPR010980 Cytochrome c/b562 YPN_0774 IPR010255 Haem peroxidase superfamily YPN_0774 IPR019794 Peroxidase, active site YPN_0774 IPR019793 Peroxidases heam-ligand binding site YPN_0774 IPR000763 Catalase-peroxidase haem YPN_0774 IPR002016 Haem peroxidase YPN_0777 IPR015861 ABC transporter, ribose import, RbsA YPN_0777 IPR003593 AAA+ ATPase domain YPN_0777 IPR003439 ABC transporter-like YPN_0777 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0777 IPR017871 ABC transporter, conserved site YPN_0778 IPR001851 ABC transporter, permease YPN_0779 IPR005474 Transketolase, N-terminal YPN_0779 IPR029061 Thiamin diphosphate-binding fold YPN_0780 IPR029061 Thiamin diphosphate-binding fold YPN_0780 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II YPN_0780 IPR005475 Transketolase-like, pyrimidine-binding domain YPN_0780 IPR033248 Transketolase, C-terminal domain YPN_0781 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPN_0781 IPR042016 Apulose kinase YPN_0781 IPR000577 Carbohydrate kinase, FGGY YPN_0781 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPN_0785 IPR036259 MFS transporter superfamily YPN_0785 IPR023745 MSF-type transporter, YcaD YPN_0785 IPR011701 Major facilitator superfamily YPN_0785 IPR020846 Major facilitator superfamily domain YPN_0786 IPR036653 CinA-like, C-terminal YPN_0786 IPR008136 CinA, C-terminal YPN_0787 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0787 IPR020584 DNA recombination/repair protein RecA, conserved site YPN_0787 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain YPN_0787 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface YPN_0787 IPR003593 AAA+ ATPase domain YPN_0787 IPR023400 DNA recombination and repair protein RecA, C-terminal YPN_0787 IPR013765 DNA recombination and repair protein RecA YPN_0788 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0788 IPR003783 Regulatory protein RecX YPN_0789 IPR002318 Alanine-tRNA ligase, class IIc YPN_0789 IPR018165 Alanyl-tRNA synthetase, class IIc, core domain YPN_0789 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal YPN_0789 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily YPN_0789 IPR003156 DHHA1 domain YPN_0789 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily YPN_0789 IPR009000 Translation protein, beta-barrel domain superfamily YPN_0789 IPR012947 Threonyl/alanyl tRNA synthetase, SAD YPN_0789 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria YPN_0790 IPR036107 Carbon storage regulator superfamily YPN_0790 IPR003751 Translational regulator CsrA YPN_0791 IPR006439 HAD hydrolase, subfamily IA YPN_0791 IPR041492 Haloacid dehalogenase-like hydrolase YPN_0791 IPR010976 Beta-phosphoglucomutase hydrolase YPN_0791 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPN_0791 IPR036412 HAD-like superfamily YPN_0791 IPR023214 HAD superfamily YPN_0792 IPR032816 SNARE associated Golgi protein YPN_0793 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain YPN_0793 IPR006334 Glutamate--cysteine ligase, monofunctional YPN_0793 IPR007370 Glutamate--cysteine ligase YPN_0794 IPR037005 S-ribosylhomocysteinase (LuxS) superfamily YPN_0794 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like YPN_0794 IPR003815 S-ribosylhomocysteinase (LuxS) YPN_0795 IPR008918 Helix-hairpin-helix motif, class 2 YPN_0795 IPR038969 Flap endonuclease YPN_0795 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal YPN_0795 IPR029060 PIN-like domain superfamily YPN_0795 IPR002421 5'-3' exonuclease, N-terminal YPN_0795 IPR036279 5'-3' exonuclease, C-terminal domain superfamily YPN_0795 IPR020045 DNA polymerase I-like, H3TH domain YPN_0796 IPR012337 Ribonuclease H-like superfamily YPN_0796 IPR017894 HTH domain, IS21 transposase-type YPN_0796 IPR001584 Integrase, catalytic core YPN_0796 IPR036397 Ribonuclease H superfamily YPN_0796 IPR006120 Resolvase, HTH domain YPN_0797 IPR002611 IstB-like ATP-binding protein YPN_0797 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_0797 IPR001270 ClpA/B family YPN_0797 IPR003593 AAA+ ATPase domain YPN_0797 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0799 IPR000644 CBS domain YPN_0799 IPR002550 CNNM, transmembrane domain YPN_0799 IPR036318 FAD-binding, type PCMH-like superfamily YPN_0799 IPR016169 FAD-binding, type PCMH, subdomain 2 YPN_0799 IPR005170 Transporter-associated domain YPN_0800 IPR002541 Cytochrome c assembly protein YPN_0801 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily YPN_0801 IPR013822 Signal recognition particle SRP54, helical bundle YPN_0801 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily YPN_0801 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0801 IPR003593 AAA+ ATPase domain YPN_0801 IPR004125 Signal recognition particle, SRP54 subunit, M-domain YPN_0801 IPR004780 Signal recognition particle protein YPN_0801 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain YPN_0801 IPR022941 Signal recognition particle, SRP54 subunit YPN_0803 IPR020592 Ribosomal protein S16, conserved site YPN_0803 IPR023803 Ribosomal protein S16 domain superfamily YPN_0803 IPR000307 Ribosomal protein S16 YPN_0804 IPR009000 Translation protein, beta-barrel domain superfamily YPN_0804 IPR027275 PRC-barrel domain YPN_0804 IPR011033 PRC-barrel-like superfamily YPN_0804 IPR002676 RimM, N-terminal YPN_0804 IPR036976 RimM, N-terminal domain superfamily YPN_0804 IPR011961 16S rRNA processing protein RimM YPN_0805 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain YPN_0805 IPR029028 Alpha/beta knot methyltransferases YPN_0805 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria YPN_0805 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal YPN_0805 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPN_0806 IPR008991 Translation protein SH3-like domain superfamily YPN_0806 IPR018257 Ribosomal protein L19, conserved site YPN_0806 IPR001857 Ribosomal protein L19 YPN_0806 IPR038657 Ribosomal protein L19 superfamily YPN_0807 IPR036515 Transposase IS200-like superfamily YPN_0807 IPR002686 Transposase IS200-like YPN_0808 IPR007433 Protein of unknown function DUF481 YPN_0809 IPR004668 Anaerobic c4-dicarboxylate membrane transporter YPN_0810 IPR004668 Anaerobic c4-dicarboxylate membrane transporter YPN_0811 IPR004668 Anaerobic c4-dicarboxylate membrane transporter YPN_0812 IPR011006 CheY-like superfamily YPN_0812 IPR007492 LytTR DNA-binding domain YPN_0812 IPR001789 Signal transduction response regulator, receiver domain YPN_0813 IPR006218 DAHP synthetase I/KDSA YPN_0813 IPR006219 DHAP synthase, class 1 YPN_0813 IPR013785 Aldolase-type TIM barrel YPN_0814 IPR011277 Chorismate mutase, T-protein YPN_0814 IPR002701 Chorismate mutase II, prokaryotic-type YPN_0814 IPR036979 Chorismate mutase domain superfamily YPN_0814 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPN_0814 IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein YPN_0814 IPR036263 Chorismate mutase type II superfamily YPN_0814 IPR003099 Prephenate dehydrogenase YPN_0814 IPR036291 NAD(P)-binding domain superfamily YPN_0815 IPR018528 Prephenate dehydratase, conserved site YPN_0815 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase YPN_0815 IPR002912 ACT domain YPN_0815 IPR010952 Chorismate mutase, gammaproteobacteria YPN_0815 IPR036263 Chorismate mutase type II superfamily YPN_0815 IPR002701 Chorismate mutase II, prokaryotic-type YPN_0815 IPR001086 Prephenate dehydratase YPN_0815 IPR036979 Chorismate mutase domain superfamily YPN_0816 IPR036515 Transposase IS200-like superfamily YPN_0816 IPR002686 Transposase IS200-like YPN_0817 IPR003489 Ribosome hibernation promoting factor/RaiA YPN_0817 IPR036567 Ribosome hibernation promotion factor-like YPN_0818 IPR011990 Tetratricopeptide-like helical domain superfamily YPN_0818 IPR039565 Outer membrane lipoprotein BamD-like YPN_0818 IPR017689 Outer membrane protein assembly factor BamD YPN_0819 IPR002942 RNA-binding S4 domain YPN_0819 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPN_0819 IPR036986 RNA-binding S4 domain superfamily YPN_0819 IPR006225 Pseudouridine synthase, RluC/RluD YPN_0819 IPR006145 Pseudouridine synthase, RsuA/RluA YPN_0819 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YPN_0821 IPR036628 Clp, N-terminal domain superfamily YPN_0821 IPR004176 Clp, N-terminal YPN_0821 IPR041546 ClpA/ClpB, AAA lid domain YPN_0821 IPR001270 ClpA/B family YPN_0821 IPR018368 ClpA/B, conserved site 1 YPN_0821 IPR028299 ClpA/B, conserved site 2 YPN_0821 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0821 IPR017730 Chaperonin ClpB YPN_0821 IPR003959 ATPase, AAA-type, core YPN_0821 IPR019489 Clp ATPase, C-terminal YPN_0821 IPR003593 AAA+ ATPase domain YPN_0822 IPR018736 Protein of unknown function DUF2279, periplasmic lipoprotein YPN_0822 IPR017028 Uncharacterised conserved protein UCP034456 YPN_0823 IPR016270 CDP-alcohol phosphatidyltransferase class-II family YPN_0823 IPR001736 Phospholipase D/Transphosphatidylase YPN_0823 IPR025202 Phospholipase D-like domain YPN_0824 IPR011761 ATP-grasp fold YPN_0824 IPR016102 Succinyl-CoA synthetase-like YPN_0824 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain YPN_0824 IPR036291 NAD(P)-binding domain superfamily YPN_0824 IPR000182 GNAT domain YPN_0824 IPR003781 CoA-binding YPN_0824 IPR013815 ATP-grasp fold, subdomain 1 YPN_0824 IPR016181 Acyl-CoA N-acyltransferase YPN_0826 IPR005746 Thioredoxin YPN_0826 IPR036249 Thioredoxin-like superfamily YPN_0826 IPR013766 Thioredoxin domain YPN_0826 IPR017937 Thioredoxin, conserved site YPN_0827 IPR029028 Alpha/beta knot methyltransferases YPN_0827 IPR004441 RNA methyltransferase TrmH family YPN_0827 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPN_0827 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPN_0827 IPR016479 tRNA/rRNA methyltransferase, YfiF, predicted YPN_0827 IPR029064 50S ribosomal protein L30e-like YPN_0827 IPR013123 RNA 2-O ribose methyltransferase, substrate binding YPN_0828 IPR004638 Drug resistance transporter EmrB-like YPN_0828 IPR011701 Major facilitator superfamily YPN_0828 IPR020846 Major facilitator superfamily domain YPN_0828 IPR036259 MFS transporter superfamily YPN_0829 IPR005694 Efflux pump membrane protein YPN_0829 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPN_0830 IPR023187 Transcriptional regulator MarR-type, conserved site YPN_0830 IPR036390 Winged helix DNA-binding domain superfamily YPN_0830 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0830 IPR000835 MarR-type HTH domain YPN_0831 IPR008407 Branched-chain amino acid transport, AzlD YPN_0832 IPR011606 Branched-chain amino acid transport, permease YPN_0833 IPR036259 MFS transporter superfamily YPN_0833 IPR011701 Major facilitator superfamily YPN_0833 IPR020846 Major facilitator superfamily domain YPN_0835 IPR023631 Amidase signature domain YPN_0835 IPR036928 Amidase signature (AS) superfamily YPN_0835 IPR014087 1-carboxybiuret hydrolase, AtzE subunit YPN_0835 IPR000120 Amidase YPN_0839 IPR001320 Ionotropic glutamate receptor YPN_0839 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YPN_0839 IPR018313 Solute-binding protein family 3, conserved site YPN_0839 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPN_0840 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPN_0840 IPR035906 MetI-like superfamily YPN_0840 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_0842 IPR003593 AAA+ ATPase domain YPN_0842 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type YPN_0842 IPR003439 ABC transporter-like YPN_0842 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0842 IPR017871 ABC transporter, conserved site YPN_0843 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPN_0843 IPR015424 Pyridoxal phosphate-dependent transferase YPN_0843 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_0843 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_0843 IPR000192 Aminotransferase class V domain YPN_0843 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase YPN_0844 IPR010158 Amidase, carbamoylase-type YPN_0844 IPR036264 Bacterial exopeptidase dimerisation domain YPN_0844 IPR011650 Peptidase M20, dimerisation domain YPN_0844 IPR002933 Peptidase M20 YPN_0845 IPR034746 POTRA domain YPN_0845 IPR013686 Polypeptide-transport-associated, ShlB-type YPN_0845 IPR005565 Haemolysin activator HlyB, C-terminal YPN_0846 IPR011050 Pectin lyase fold/virulence factor YPN_0846 IPR008638 Filamentous haemagglutinin, N-terminal YPN_0846 IPR012334 Pectin lyase fold YPN_0848 IPR041109 HMW1C N-terminal YPN_0848 IPR040542 HMW1 domain 2 YPN_0850 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type YPN_0850 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily YPN_0850 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily YPN_0850 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal YPN_0850 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal YPN_0850 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal YPN_0851 IPR004515 Phosphoheptose isomerase YPN_0851 IPR001347 Sugar isomerase (SIS) YPN_0851 IPR035461 GmhA/DiaA YPN_0852 IPR026869 Putative glutamine amidotransferase type 2 YPN_0852 IPR029055 Nucleophile aminohydrolases, N-terminal YPN_0852 IPR017932 Glutamine amidotransferase type 2 domain YPN_0853 IPR038063 L,D-transpeptidase catalytic domain-like YPN_0853 IPR005490 L,D-transpeptidase catalytic domain YPN_0855 IPR022615 Na(+)-translocating NADH-quinone reductase subunit A, C-terminal domain YPN_0855 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A YPN_0856 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B YPN_0856 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD YPN_0857 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C YPN_0857 IPR007329 FMN-binding YPN_0858 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D YPN_0858 IPR003667 NqrDE/RnfAE YPN_0859 IPR003667 NqrDE/RnfAE YPN_0859 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E YPN_0860 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPN_0860 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPN_0860 IPR036010 2Fe-2S ferredoxin-like superfamily YPN_0860 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPN_0860 IPR017927 FAD-binding domain, ferredoxin reductase-type YPN_0860 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F YPN_0860 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPN_0860 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase YPN_0860 IPR012675 Beta-grasp domain superfamily YPN_0860 IPR017938 Riboflavin synthase-like beta-barrel YPN_0861 IPR003374 ApbE-like superfamily YPN_0861 IPR042159 Flavin-trafficking protein ApbE YPN_0861 IPR024932 Flavin transferase ApbE YPN_0863 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily YPN_0863 IPR030395 Glycerophosphodiester phosphodiesterase domain YPN_0864 IPR017961 DNA polymerase, Y-family, little finger domain YPN_0864 IPR036775 DNA polymerase, Y-family, little finger domain superfamily YPN_0864 IPR024728 DNA polymerase type-Y, HhH motif YPN_0864 IPR022880 DNA polymerase IV YPN_0864 IPR001126 UmuC domain YPN_0865 IPR002933 Peptidase M20 YPN_0865 IPR011650 Peptidase M20, dimerisation domain YPN_0865 IPR001160 Peptidase M20C, Xaa-His dipeptidase YPN_0866 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0866 IPR036390 Winged helix DNA-binding domain superfamily YPN_0866 IPR005119 LysR, substrate-binding YPN_0866 IPR000847 Transcription regulator HTH, LysR YPN_0868 IPR029057 Phosphoribosyltransferase-like YPN_0868 IPR023747 Xanthine-guanine phosphoribosyltransferase YPN_0868 IPR000836 Phosphoribosyltransferase domain YPN_0870 IPR038208 Sigma factor-binding protein Crl superfamily YPN_0870 IPR009986 Sigma factor-binding transcriptional regulator Crl YPN_0871 IPR002478 PUA domain YPN_0871 IPR001057 Glutamate/acetylglutamate kinase YPN_0871 IPR011529 Glutamate 5-kinase YPN_0871 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase YPN_0871 IPR019797 Glutamate 5-kinase, conserved site YPN_0871 IPR015947 PUA-like superfamily YPN_0871 IPR036974 PUA domain superfamily YPN_0871 IPR001048 Aspartate/glutamate/uridylate kinase YPN_0871 IPR036393 Acetylglutamate kinase-like superfamily YPN_0871 IPR041739 Glutamate-5-kinase domain YPN_0872 IPR012134 Glutamate-5-semialdehyde dehydrogenase YPN_0872 IPR000965 GPR domain YPN_0872 IPR016161 Aldehyde/histidinol dehydrogenase YPN_0872 IPR016163 Aldehyde dehydrogenase, C-terminal YPN_0872 IPR016162 Aldehyde dehydrogenase, N-terminal YPN_0872 IPR015590 Aldehyde dehydrogenase domain YPN_0872 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site YPN_0873 IPR009875 PilZ domain YPN_0873 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal YPN_0873 IPR023787 Type III secretion system flagellar brake protein YcgR YPN_0873 IPR012349 FMN-binding split barrel YPN_0876 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_0876 IPR013216 Methyltransferase type 11 YPN_0878 IPR027544 Shikimate kinase 2 YPN_0878 IPR023000 Shikimate kinase, conserved site YPN_0878 IPR000623 Shikimate kinase/Threonine synthase-like 1 YPN_0878 IPR031322 Shikimate kinase/gluconokinase YPN_0878 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0879 IPR009664 Pyrimidine/purine nucleoside phosphorylase YPN_0879 IPR014710 RmlC-like jelly roll fold YPN_0879 IPR011051 RmlC-like cupin domain superfamily YPN_0880 IPR007476 Putative exonuclease, RdgC YPN_0881 IPR000600 ROK family YPN_0882 IPR004592 Nuclease SbcC, gammaproteobacteria type YPN_0882 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0882 IPR038729 Rad50/SbcC-type AAA domain YPN_0883 IPR026843 Nuclease SbcCD subunit D, C-terminal domain YPN_0883 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPN_0883 IPR029052 Metallo-dependent phosphatase-like YPN_0883 IPR041796 Mre11 nuclease, N-terminal metallophosphatase domain YPN_0883 IPR004593 Nuclease SbcCD subunit D YPN_0884 IPR011006 CheY-like superfamily YPN_0884 IPR001867 OmpR/PhoB-type DNA-binding domain YPN_0884 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB YPN_0884 IPR039420 Transcriptional regulatory protein WalR-like YPN_0884 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0884 IPR001789 Signal transduction response regulator, receiver domain YPN_0885 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_0885 IPR003594 Histidine kinase/HSP90-like ATPase YPN_0885 IPR005467 Histidine kinase domain YPN_0885 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPN_0885 IPR000014 PAS domain YPN_0885 IPR035965 PAS domain superfamily YPN_0885 IPR013767 PAS fold YPN_0885 IPR021766 Phosphate regulon sensor protein PhoR YPN_0885 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPN_0885 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR YPN_0885 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPN_0886 IPR011862 Phosphate binding protein YPN_0886 IPR024370 PBP domain YPN_0887 IPR004685 Branched-chain amino acid transport system II carrier protein YPN_0888 IPR004840 Amino acid permease, conserved site YPN_0888 IPR004841 Amino acid permease/ SLC12A domain YPN_0889 IPR013780 Glycosyl hydrolase, all-beta YPN_0889 IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain YPN_0889 IPR017853 Glycoside hydrolase superfamily YPN_0889 IPR014756 Immunoglobulin E-set YPN_0889 IPR017069 Maltodextrin glucosidase YPN_0889 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPN_0890 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPN_0890 IPR036291 NAD(P)-binding domain superfamily YPN_0890 IPR002347 Short-chain dehydrogenase/reductase SDR YPN_0890 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase YPN_0891 IPR029055 Nucleophile aminohydrolases, N-terminal YPN_0891 IPR000101 Gamma-glutamyltranspeptidase YPN_0892 IPR029055 Nucleophile aminohydrolases, N-terminal YPN_0892 IPR000101 Gamma-glutamyltranspeptidase YPN_0893 IPR013766 Thioredoxin domain YPN_0893 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant YPN_0893 IPR024706 Peroxiredoxin, AhpC-type YPN_0893 IPR019479 Peroxiredoxin, C-terminal YPN_0893 IPR036249 Thioredoxin-like superfamily YPN_0894 IPR007431 Acyl carrier protein phosphodiesterase YPN_0894 IPR023491 Acyl carrier protein phosphodiesterase, gammaproteobacteria YPN_0895 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA YPN_0895 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily YPN_0895 IPR042119 QueA, domain 2 YPN_0895 IPR042118 QueA, domain 1 YPN_0896 IPR002616 tRNA-guanine(15) transglycosylase-like YPN_0896 IPR036511 Queuine tRNA-ribosyltransferase-like YPN_0896 IPR004803 tRNA-guanine transglycosylase YPN_0897 IPR003849 Preprotein translocase YajC YPN_0898 IPR027398 SecD export protein N-terminal TM domain YPN_0898 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YPN_0898 IPR005791 Protein translocase subunit SecD YPN_0898 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site YPN_0898 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial YPN_0899 IPR005665 Protein-export membrane protein SecF, bacterial YPN_0899 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site YPN_0899 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YPN_0899 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial YPN_0901 IPR002686 Transposase IS200-like YPN_0901 IPR036515 Transposase IS200-like superfamily YPN_0904 IPR005144 ATP-cone domain YPN_0904 IPR003796 Ribonucleotide reductase regulator NrdR-like YPN_0905 IPR004794 Riboflavin biosynthesis protein RibD YPN_0905 IPR024072 Dihydrofolate reductase-like domain superfamily YPN_0905 IPR011549 Riboflavin-specific deaminase, C-terminal YPN_0905 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal YPN_0905 IPR002125 Cytidine and deoxycytidylate deaminase domain YPN_0905 IPR016192 APOBEC/CMP deaminase, zinc-binding YPN_0905 IPR016193 Cytidine deaminase-like YPN_0906 IPR036467 Lumazine/riboflavin synthase superfamily YPN_0906 IPR002180 Lumazine/riboflavin synthase YPN_0906 IPR034964 Lumazine synthase YPN_0907 IPR035926 NusB-like superfamily YPN_0907 IPR011605 NusB antitermination factor YPN_0907 IPR006027 NusB/RsmB/TIM44 YPN_0908 IPR036921 PurM-like, N-terminal domain superfamily YPN_0908 IPR036676 PurM-like, C-terminal domain superfamily YPN_0908 IPR010918 PurM-like, C-terminal domain YPN_0908 IPR016188 PurM-like, N-terminal domain YPN_0908 IPR006283 Thiamine-monophosphate kinase YPN_0909 IPR036681 PgpA-like superfamily YPN_0909 IPR026037 Phosphatidylglycerophosphatase A YPN_0909 IPR007686 YutG/PgpA domain YPN_0911 IPR005477 Deoxyxylulose-5-phosphate synthase YPN_0911 IPR033248 Transketolase, C-terminal domain YPN_0911 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II YPN_0911 IPR005475 Transketolase-like, pyrimidine-binding domain YPN_0911 IPR029061 Thiamin diphosphate-binding fold YPN_0911 IPR020826 Transketolase binding site YPN_0911 IPR005474 Transketolase, N-terminal YPN_0912 IPR008949 Isoprenoid synthase domain superfamily YPN_0912 IPR000092 Polyprenyl synthetase YPN_0912 IPR033749 Polyprenyl synthetase, conserved site YPN_0913 IPR037004 Exonuclease VII, small subunit superfamily YPN_0913 IPR003761 Exonuclease VII, small subunit YPN_0915 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_0915 IPR001763 Rhodanese-like domain YPN_0915 IPR036873 Rhodanese-like domain superfamily YPN_0915 IPR026340 Thiazole biosynthesis domain YPN_0915 IPR020536 Thil, AANH domain YPN_0915 IPR003720 tRNA sulfurtransferase ThiI YPN_0915 IPR004114 THUMP domain YPN_0916 IPR002818 DJ-1/PfpI YPN_0916 IPR006287 Protein/nucleic acid deglycase DJ-1 YPN_0916 IPR029062 Class I glutamine amidotransferase-like YPN_0917 IPR036291 NAD(P)-binding domain superfamily YPN_0917 IPR013332 Ketopantoate reductase, N-terminal domain YPN_0917 IPR013752 Ketopantoate reductase, C-terminal domain YPN_0917 IPR003710 Ketopantoate reductase ApbA/PanE YPN_0917 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPN_0917 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPN_0918 IPR035570 UPF0234, N-terminal YPN_0918 IPR035571 UPF0234-like, C-terminal YPN_0918 IPR007551 Protein of unknown function DUF520 YPN_0918 IPR036183 YajQ-like superfamily YPN_0919 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0919 IPR002611 IstB-like ATP-binding protein YPN_0919 IPR003593 AAA+ ATPase domain YPN_0919 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_0919 IPR001270 ClpA/B family YPN_0920 IPR036397 Ribonuclease H superfamily YPN_0920 IPR017894 HTH domain, IS21 transposase-type YPN_0920 IPR001584 Integrase, catalytic core YPN_0920 IPR006120 Resolvase, HTH domain YPN_0920 IPR012337 Ribonuclease H-like superfamily YPN_0921 IPR035570 UPF0234, N-terminal YPN_0921 IPR035571 UPF0234-like, C-terminal YPN_0921 IPR007551 Protein of unknown function DUF520 YPN_0921 IPR036183 YajQ-like superfamily YPN_0922 IPR036259 MFS transporter superfamily YPN_0922 IPR011701 Major facilitator superfamily YPN_0922 IPR020846 Major facilitator superfamily domain YPN_0923 IPR000537 UbiA prenyltransferase family YPN_0923 IPR006369 Protohaem IX farnesyltransferase YPN_0923 IPR030470 UbiA prenyltransferase conserved site YPN_0924 IPR014210 Cytochrome o ubiquinol oxidase subunit IV YPN_0924 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes YPN_0925 IPR000298 Cytochrome c oxidase subunit III-like YPN_0925 IPR033946 Ubiquinol oxidase subunit III domain YPN_0925 IPR035973 Cytochrome c oxidase subunit III-like superfamily YPN_0925 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle YPN_0925 IPR014206 Cytochrome o ubiquinol oxidase, subunit III YPN_0925 IPR024791 Cytochrome c oxidase subunit III YPN_0926 IPR000883 Cytochrome c oxidase subunit I YPN_0926 IPR014207 Cytochrome o ubiquinol oxidase, subunit I YPN_0926 IPR023616 Cytochrome c oxidase-like, subunit I domain YPN_0926 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site YPN_0926 IPR036927 Cytochrome c oxidase-like, subunit I superfamily YPN_0927 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily YPN_0927 IPR006333 Cytochrome o ubiquinol oxidase subunit II YPN_0927 IPR034227 Ubiquinol oxidase subunit 2, cupredoxin domain YPN_0927 IPR010514 COX aromatic rich motif YPN_0927 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain YPN_0927 IPR002429 Cytochrome c oxidase subunit II-like C-terminal YPN_0927 IPR008972 Cupredoxin YPN_0928 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily YPN_0928 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like YPN_0929 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 YPN_0929 IPR020846 Major facilitator superfamily domain YPN_0929 IPR036259 MFS transporter superfamily YPN_0929 IPR011701 Major facilitator superfamily YPN_0930 IPR012640 Membrane lipoprotein, lipid attachment site YPN_0930 IPR005619 Uncharacterised protein family, YajG YPN_0931 IPR036065 BolA-like superfamily YPN_0931 IPR002634 BolA protein YPN_0932 IPR008880 Trigger factor, C-terminal YPN_0932 IPR037041 Trigger factor, C-terminal domain superfamily YPN_0932 IPR005215 Trigger factor YPN_0932 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YPN_0932 IPR008881 Trigger factor, ribosome-binding, bacterial YPN_0932 IPR027304 Trigger factor/SurA domain superfamily YPN_0932 IPR036611 Trigger factor ribosome-binding domain superfamily YPN_0933 IPR001907 ATP-dependent Clp protease proteolytic subunit YPN_0933 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA YPN_0933 IPR033135 ClpP, histidine active site YPN_0933 IPR018215 ClpP, Ser active site YPN_0933 IPR029045 ClpP/crotonase-like domain superfamily YPN_0934 IPR003593 AAA+ ATPase domain YPN_0934 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0934 IPR019489 Clp ATPase, C-terminal YPN_0934 IPR004487 Clp protease, ATP-binding subunit ClpX YPN_0934 IPR010603 Zinc finger, ClpX C4-type YPN_0934 IPR038366 Zinc finger, ClpX C4-type superfamily YPN_0934 IPR003959 ATPase, AAA-type, core YPN_0935 IPR003959 ATPase, AAA-type, core YPN_0935 IPR027543 Lon protease, bacterial YPN_0935 IPR003593 AAA+ ATPase domain YPN_0935 IPR004815 Lon protease, bacterial/eukaryotic-type YPN_0935 IPR008269 Peptidase S16, Lon proteolytic domain YPN_0935 IPR027065 Lon protease YPN_0935 IPR003111 Lon, substrate-binding domain YPN_0935 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPN_0935 IPR020568 Ribosomal protein S5 domain 2-type fold YPN_0935 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0935 IPR008268 Peptidase S16, active site YPN_0935 IPR015947 PUA-like superfamily YPN_0936 IPR000119 Histone-like DNA-binding protein YPN_0936 IPR020816 Histone-like DNA-binding protein, conserved site YPN_0936 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily YPN_0937 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site YPN_0937 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type YPN_0937 IPR027304 Trigger factor/SurA domain superfamily YPN_0938 IPR004509 Competence protein ComEA, helix-hairpin-helix domain YPN_0938 IPR010994 RuvA domain 2-like YPN_0938 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 YPN_0939 IPR029069 HotDog domain superfamily YPN_0939 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family YPN_0940 IPR018317 Queuosine biosynthesis protein QueC YPN_0940 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_0941 IPR039424 Solute-binding protein family 5 YPN_0941 IPR000914 Solute-binding protein family 5 domain YPN_0941 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain YPN_0942 IPR023214 HAD superfamily YPN_0942 IPR000150 Cof family YPN_0942 IPR036412 HAD-like superfamily YPN_0942 IPR006379 HAD-superfamily hydrolase, subfamily IIB YPN_0942 IPR023938 HMP-PP phosphatase YPN_0943 IPR001926 Pyridoxal-phosphate dependent enzyme YPN_0943 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPN_0943 IPR005859 Cysteine synthase CysK YPN_0943 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site YPN_0943 IPR005856 Cysteine synthase YPN_0944 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0944 IPR011008 Dimeric alpha-beta barrel YPN_0944 IPR019885 Transcription regulator HTH, AsnC-type, conserved site YPN_0944 IPR011991 ArsR-like helix-turn-helix domain YPN_0944 IPR019888 Transcription regulator AsnC-type YPN_0944 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YPN_0944 IPR036390 Winged helix DNA-binding domain superfamily YPN_0944 IPR000485 AsnC-type HTH domain YPN_0945 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPN_0945 IPR003593 AAA+ ATPase domain YPN_0945 IPR003439 ABC transporter-like YPN_0945 IPR017871 ABC transporter, conserved site YPN_0945 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0945 IPR011527 ABC transporter type 1, transmembrane domain YPN_0945 IPR039421 Type I protein exporter YPN_0946 IPR039421 Type I protein exporter YPN_0946 IPR003439 ABC transporter-like YPN_0946 IPR003593 AAA+ ATPase domain YPN_0946 IPR011527 ABC transporter type 1, transmembrane domain YPN_0946 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPN_0946 IPR017871 ABC transporter, conserved site YPN_0946 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0947 IPR002187 Nitrogen regulatory protein PII YPN_0947 IPR002332 Nitrogen regulatory protein P-II, urydylation site YPN_0947 IPR017918 Nitrogen regulatory protein PII, conserved site YPN_0947 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPN_0947 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPN_0948 IPR024041 Ammonium transporter AmtB-like domain YPN_0948 IPR029020 Ammonium/urea transporter YPN_0948 IPR018047 Ammonium transporter, conserved site YPN_0948 IPR001905 Ammonium transporter YPN_0949 IPR029069 HotDog domain superfamily YPN_0949 IPR003703 Acyl-CoA thioesterase YPN_0950 IPR039366 YscW/ExsB YPN_0951 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YPN_0951 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain YPN_0951 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_0952 IPR007985 Haemolysin expression modulating, HHA YPN_0952 IPR036666 HHA superfamily YPN_0953 IPR019693 Biofilm formation regulator YbaJ YPN_0955 IPR000473 Ribosomal protein L36 YPN_0955 IPR035977 Ribosomal protein L36 superfamily YPN_0956 IPR002150 Ribosomal protein L31 YPN_0956 IPR027493 Ribosomal protein L31 type B YPN_0956 IPR042105 Ribosomal protein L31 superfamily YPN_0956 IPR034704 L28p-like YPN_0957 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPN_0957 IPR001036 Acriflavin resistance protein YPN_0957 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 YPN_0958 IPR006143 RND efflux pump, membrane fusion protein YPN_0958 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPN_0959 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPN_0959 IPR013572 Transcription regulator MAATS, C-terminal YPN_0959 IPR001647 DNA-binding HTH domain, TetR-type YPN_0959 IPR009057 Homeobox-like domain superfamily YPN_0959 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YPN_0960 IPR027396 DsrEFH-like YPN_0960 IPR003787 Sulphur relay, DsrE/F-like protein YPN_0961 IPR011066 Mechanosensitive ion channel MscS, C-terminal YPN_0961 IPR006685 Mechanosensitive ion channel MscS YPN_0961 IPR023408 Mechanosensitive ion channel MscS domain superfamily YPN_0961 IPR010920 LSM domain superfamily YPN_0961 IPR023298 P-type ATPase, transmembrane domain superfamily YPN_0961 IPR025692 Mechanosensitive ion channel inner membrane domain 1 YPN_0961 IPR006686 Mechanosensitive ion channel MscS, conserved site YPN_0961 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 YPN_0961 IPR024393 Mechanosensitive ion channel MscS, porin domain YPN_0962 IPR019630 Protein of unknown function DUF2496, YbaM-related YPN_0964 IPR007401 Protein of unknown function DUF454 YPN_0965 IPR029057 Phosphoribosyltransferase-like YPN_0965 IPR005764 Adenine phosphoribosyl transferase YPN_0965 IPR000836 Phosphoribosyltransferase domain YPN_0966 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily YPN_0966 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0966 IPR021029 DNA polymerase III, tau subunit, domain V YPN_0966 IPR012763 DNA polymerase III, subunit gamma/ tau YPN_0966 IPR022754 DNA polymerase III, gamma subunit, domain III YPN_0966 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV YPN_0966 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YPN_0966 IPR001270 ClpA/B family YPN_0966 IPR003593 AAA+ ATPase domain YPN_0967 IPR004401 Nucleoid-associated protein YbaB/EbfC family YPN_0967 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily YPN_0968 IPR023627 Recombination protein RecR YPN_0968 IPR023628 Recombination protein RecR, C4-type zinc finger YPN_0968 IPR034137 RecR, TOPRIM domain YPN_0968 IPR000093 DNA recombination protein RecR YPN_0968 IPR006171 TOPRIM domain YPN_0968 IPR015967 Recombination protein RecR, conserved site YPN_0970 IPR003594 Histidine kinase/HSP90-like ATPase YPN_0970 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_0970 IPR019805 Heat shock protein Hsp90, conserved site YPN_0970 IPR037196 HSP90, C-terminal domain YPN_0970 IPR001404 Heat shock protein Hsp90 family YPN_0970 IPR020575 Heat shock protein Hsp90, N-terminal YPN_0970 IPR020568 Ribosomal protein S5 domain 2-type fold YPN_0971 IPR033690 Adenylate kinase, conserved site YPN_0971 IPR006259 Adenylate kinase subfamily YPN_0971 IPR007862 Adenylate kinase, active site lid domain YPN_0971 IPR000850 Adenylate kinase/UMP-CMP kinase YPN_0971 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_0972 IPR033644 Ferrochelatase, C-terminal YPN_0972 IPR033659 Ferrochelatase, N-terminal YPN_0972 IPR001015 Ferrochelatase YPN_0972 IPR019772 Ferrochelatase, active site YPN_0973 IPR036010 2Fe-2S ferredoxin-like superfamily YPN_0973 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPN_0973 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPN_0973 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPN_0973 IPR017938 Riboflavin synthase-like beta-barrel YPN_0973 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPN_0973 IPR017927 FAD-binding domain, ferredoxin reductase-type YPN_0973 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPN_0973 IPR012675 Beta-grasp domain superfamily YPN_0974 IPR005835 Nucleotidyl transferase domain YPN_0974 IPR029044 Nucleotide-diphospho-sugar transferases YPN_0974 IPR013446 Glucose-1-phosphate cytidylyltransferase YPN_0975 IPR036291 NAD(P)-binding domain superfamily YPN_0975 IPR016040 NAD(P)-binding domain YPN_0975 IPR013445 CDP-glucose 4,6-dehydratase YPN_0976 IPR016040 NAD(P)-binding domain YPN_0976 IPR036291 NAD(P)-binding domain superfamily YPN_0976 IPR013445 CDP-glucose 4,6-dehydratase YPN_0977 IPR015424 Pyridoxal phosphate-dependent transferase YPN_0977 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_0977 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YPN_0977 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_0978 IPR001509 NAD-dependent epimerase/dehydratase YPN_0978 IPR036291 NAD(P)-binding domain superfamily YPN_0984 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain YPN_0984 IPR001296 Glycosyl transferase, family 1 YPN_0985 IPR006368 GDP-mannose 4,6-dehydratase YPN_0985 IPR036291 NAD(P)-binding domain superfamily YPN_0985 IPR016040 NAD(P)-binding domain YPN_0986 IPR016040 NAD(P)-binding domain YPN_0986 IPR006368 GDP-mannose 4,6-dehydratase YPN_0986 IPR036291 NAD(P)-binding domain superfamily YPN_0987 IPR028614 GDP-L-fucose synthase/GDP-L-colitose synthase YPN_0987 IPR001509 NAD-dependent epimerase/dehydratase YPN_0987 IPR036291 NAD(P)-binding domain superfamily YPN_0988 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YPN_0988 IPR014710 RmlC-like jelly roll fold YPN_0988 IPR005835 Nucleotidyl transferase domain YPN_0988 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal YPN_0988 IPR011051 RmlC-like cupin domain superfamily YPN_0988 IPR029044 Nucleotide-diphospho-sugar transferases YPN_0989 IPR001173 Glycosyltransferase 2-like YPN_0989 IPR029044 Nucleotide-diphospho-sugar transferases YPN_0990 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YPN_0990 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily YPN_0990 IPR016066 Alpha-D-phosphohexomutase, conserved site YPN_0990 IPR005841 Alpha-D-phosphohexomutase superfamily YPN_0990 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YPN_0990 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YPN_0990 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YPN_0990 IPR005843 Alpha-D-phosphohexomutase, C-terminal YPN_0991 IPR001207 Transposase, mutator type YPN_0992 IPR001207 Transposase, mutator type YPN_0993 IPR003856 Polysaccharide chain length determinant N-terminal domain YPN_0994 IPR029056 Ribokinase-like YPN_0994 IPR011611 Carbohydrate kinase PfkB YPN_0994 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPN_0995 IPR004771 K+/H+ exchanger YPN_0995 IPR006153 Cation/H+ exchanger YPN_0995 IPR036291 NAD(P)-binding domain superfamily YPN_0995 IPR003148 Regulator of K+ conductance, N-terminal YPN_0995 IPR038770 Sodium/solute symporter superfamily YPN_0996 IPR011701 Major facilitator superfamily YPN_0996 IPR036259 MFS transporter superfamily YPN_0996 IPR020846 Major facilitator superfamily domain YPN_0997 IPR006146 5'-Nucleotidase, conserved site YPN_0997 IPR029052 Metallo-dependent phosphatase-like YPN_0997 IPR036907 5'-Nucleotidase, C-terminal domain superfamily YPN_0997 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPN_0997 IPR006179 5'-Nucleotidase/apyrase YPN_0997 IPR008334 5'-Nucleotidase, C-terminal YPN_0998 IPR029052 Metallo-dependent phosphatase-like YPN_0998 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPN_0998 IPR036907 5'-Nucleotidase, C-terminal domain superfamily YPN_0998 IPR006179 5'-Nucleotidase/apyrase YPN_0998 IPR006146 5'-Nucleotidase, conserved site YPN_0998 IPR008334 5'-Nucleotidase, C-terminal YPN_0999 IPR006179 5'-Nucleotidase/apyrase YPN_0999 IPR036907 5'-Nucleotidase, C-terminal domain superfamily YPN_0999 IPR029052 Metallo-dependent phosphatase-like YPN_0999 IPR008334 5'-Nucleotidase, C-terminal YPN_0999 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPN_0999 IPR006146 5'-Nucleotidase, conserved site YPN_1001 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain YPN_1001 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC YPN_1001 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily YPN_1002 IPR002816 TraB family YPN_1003 IPR023214 HAD superfamily YPN_1003 IPR023299 P-type ATPase, cytoplasmic domain N YPN_1003 IPR018303 P-type ATPase, phosphorylation site YPN_1003 IPR023298 P-type ATPase, transmembrane domain superfamily YPN_1003 IPR017969 Heavy-metal-associated, conserved site YPN_1003 IPR006121 Heavy metal-associated domain, HMA YPN_1003 IPR036163 Heavy metal-associated domain superfamily YPN_1003 IPR001757 P-type ATPase YPN_1003 IPR027256 P-type ATPase, subfamily IB YPN_1003 IPR008250 P-type ATPase, A domain superfamily YPN_1003 IPR036412 HAD-like superfamily YPN_1004 IPR011789 Cu(I)-responsive transcriptional regulator YPN_1004 IPR009061 Putative DNA-binding domain superfamily YPN_1004 IPR000551 MerR-type HTH domain YPN_1005 IPR002810 NfeD-like, C-terminal domain YPN_1006 IPR001107 Band 7 domain YPN_1006 IPR036013 Band 7/SPFH domain superfamily YPN_1006 IPR001972 Stomatin family YPN_1006 IPR032435 Band 7, C-terminal extension YPN_1006 IPR018080 Band 7/stomatin-like, conserved site YPN_1007 IPR011990 Tetratricopeptide-like helical domain superfamily YPN_1007 IPR013766 Thioredoxin domain YPN_1007 IPR036249 Thioredoxin-like superfamily YPN_1008 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPN_1008 IPR002347 Short-chain dehydrogenase/reductase SDR YPN_1008 IPR036291 NAD(P)-binding domain superfamily YPN_1009 IPR036514 SGNH hydrolase superfamily YPN_1009 IPR008265 Lipase, GDSL, active site YPN_1009 IPR013830 SGNH hydrolase-type esterase domain YPN_1010 IPR003593 AAA+ ATPase domain YPN_1010 IPR003439 ABC transporter-like YPN_1010 IPR017871 ABC transporter, conserved site YPN_1010 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1011 IPR038766 Membrane component of ABC transporter, predicted YPN_1012 IPR002686 Transposase IS200-like YPN_1012 IPR036515 Transposase IS200-like superfamily YPN_1013 IPR013815 ATP-grasp fold, subdomain 1 YPN_1013 IPR011761 ATP-grasp fold YPN_1013 IPR016185 Pre-ATP-grasp domain superfamily YPN_1013 IPR040686 Phosphoribosylaminoimidazole carboxylase, C-terminal domain YPN_1013 IPR011054 Rudiment single hybrid motif YPN_1013 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit YPN_1013 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YPN_1014 IPR000031 PurE domain YPN_1014 IPR024694 PurE, prokaryotic type YPN_1014 IPR035893 PurE domain superfamily YPN_1014 IPR033747 Class I PurE YPN_1015 IPR029052 Metallo-dependent phosphatase-like YPN_1015 IPR010138 UDP-2,3-diacylglucosamine hydrolase YPN_1015 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPN_1016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain YPN_1016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase YPN_1016 IPR029000 Cyclophilin-like domain superfamily YPN_1016 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site YPN_1017 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase YPN_1017 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR YPN_1017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_1017 IPR032678 tRNA synthetases class I, catalytic domain YPN_1017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YPN_1017 IPR015803 Cysteine-tRNA ligase YPN_1018 IPR002686 Transposase IS200-like YPN_1018 IPR036515 Transposase IS200-like superfamily YPN_1019 IPR036986 RNA-binding S4 domain superfamily YPN_1019 IPR002942 RNA-binding S4 domain YPN_1020 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YPN_1020 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site YPN_1020 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YPN_1020 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase YPN_1020 IPR036291 NAD(P)-binding domain superfamily YPN_1023 IPR013762 Integrase-like, catalytic domain superfamily YPN_1023 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPN_1023 IPR002104 Integrase, catalytic domain YPN_1023 IPR010998 Integrase/recombinase, N-terminal YPN_1024 IPR000462 CDP-alcohol phosphatidyltransferase YPN_1025 IPR000374 Phosphatidate cytidylyltransferase YPN_1026 IPR002123 Phospholipid/glycerol acyltransferase YPN_1026 IPR016676 Phospholipid/glycerol acyltransferase, predicted YPN_1027 IPR029058 Alpha/Beta hydrolase fold YPN_1027 IPR022742 Serine aminopeptidase, S33 YPN_1027 IPR022744 Methyltransferase domain, putative YPN_1027 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_1028 IPR020422 Dual specificity protein phosphatase domain YPN_1028 IPR000387 Tyrosine specific protein phosphatases domain YPN_1028 IPR003595 Protein-tyrosine phosphatase, catalytic YPN_1028 IPR016130 Protein-tyrosine phosphatase, active site YPN_1028 IPR029021 Protein-tyrosine phosphatase-like YPN_1028 IPR000340 Dual specificity phosphatase, catalytic domain YPN_1031 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_1031 IPR003593 AAA+ ATPase domain YPN_1031 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1031 IPR001270 ClpA/B family YPN_1031 IPR002611 IstB-like ATP-binding protein YPN_1032 IPR012337 Ribonuclease H-like superfamily YPN_1032 IPR017894 HTH domain, IS21 transposase-type YPN_1032 IPR001584 Integrase, catalytic core YPN_1032 IPR036397 Ribonuclease H superfamily YPN_1032 IPR006120 Resolvase, HTH domain YPN_1033 IPR036390 Winged helix DNA-binding domain superfamily YPN_1033 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1033 IPR000847 Transcription regulator HTH, LysR YPN_1033 IPR005119 LysR, substrate-binding YPN_1034 IPR020471 Aldo/keto reductase YPN_1034 IPR023210 NADP-dependent oxidoreductase domain YPN_1034 IPR036812 NADP-dependent oxidoreductase domain superfamily YPN_1035 IPR020471 Aldo/keto reductase YPN_1035 IPR018170 Aldo/keto reductase, conserved site YPN_1035 IPR036812 NADP-dependent oxidoreductase domain superfamily YPN_1035 IPR023210 NADP-dependent oxidoreductase domain YPN_1042 IPR001207 Transposase, mutator type YPN_1043 IPR039994 JmjC domain-containing YPN_1043 IPR003347 JmjC domain YPN_1045 IPR036709 Autotransporter beta-domain superfamily YPN_1045 IPR005546 Autotransporter beta-domain YPN_1045 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPN_1045 IPR011050 Pectin lyase fold/virulence factor YPN_1045 IPR024973 ESPR domain YPN_1045 IPR006315 Outer membrane autotransporter barrel YPN_1045 IPR030930 Adhesin of bacterial autotransporter system YPN_1045 IPR004899 Pertactin, central region YPN_1045 IPR003991 Pertactin virulence factor family YPN_1048 IPR008514 Type VI secretion system effector, Hcp YPN_1048 IPR036624 Hcp1-like superfamily YPN_1054 IPR038722 Ner, winged helix-turn-helix DNA-binding domain YPN_1054 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPN_1055 IPR023346 Lysozyme-like domain superfamily YPN_1055 IPR011815 Penicillin-binding protein 1C YPN_1055 IPR009647 Penicillin-binding, C-terminal YPN_1055 IPR001264 Glycosyl transferase, family 51 YPN_1055 IPR036950 Penicillin binding protein transglycosylase domain YPN_1055 IPR012338 Beta-lactamase/transpeptidase-like YPN_1055 IPR001460 Penicillin-binding protein, transpeptidase YPN_1056 IPR036515 Transposase IS200-like superfamily YPN_1056 IPR002686 Transposase IS200-like YPN_1057 IPR002890 Macroglobulin domain YPN_1057 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid YPN_1057 IPR041462 Bacterial Alpha-2-macroglobulin, MG6 domain YPN_1057 IPR041246 Bacterial alpha-2-macroglobulin MG10 domain YPN_1057 IPR001599 Alpha-2-macroglobulin YPN_1057 IPR041203 Bacterial Alpha-2-macroglobulin, MG5 domain YPN_1057 IPR021868 Alpha-2-macroglobulin MG3 domain YPN_1057 IPR011625 Alpha-2-macroglobulin, bait region domain YPN_1061 IPR016162 Aldehyde dehydrogenase, N-terminal YPN_1061 IPR016160 Aldehyde dehydrogenase, cysteine active site YPN_1061 IPR016161 Aldehyde/histidinol dehydrogenase YPN_1061 IPR015590 Aldehyde dehydrogenase domain YPN_1061 IPR010061 Methylmalonate-semialdehyde dehydrogenase YPN_1061 IPR016163 Aldehyde dehydrogenase, C-terminal YPN_1062 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPN_1062 IPR012000 Thiamine pyrophosphate enzyme, central domain YPN_1062 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPN_1062 IPR000399 TPP-binding enzyme, conserved site YPN_1062 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPN_1062 IPR029061 Thiamin diphosphate-binding fold YPN_1062 IPR030817 3,5/4-Trihydroxycyclohexa-1,2-dione hydrolase YPN_1062 IPR023757 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase, Firmicutes YPN_1063 IPR004104 Oxidoreductase, C-terminal YPN_1063 IPR000683 Oxidoreductase, N-terminal YPN_1063 IPR036291 NAD(P)-binding domain superfamily YPN_1063 IPR030827 Inositol 2-dehydrogenase YPN_1064 IPR004104 Oxidoreductase, C-terminal YPN_1064 IPR036291 NAD(P)-binding domain superfamily YPN_1064 IPR000683 Oxidoreductase, N-terminal YPN_1064 IPR030827 Inositol 2-dehydrogenase YPN_1065 IPR028082 Periplasmic binding protein-like I YPN_1065 IPR025997 Periplasmic binding protein YPN_1066 IPR015861 ABC transporter, ribose import, RbsA YPN_1066 IPR017871 ABC transporter, conserved site YPN_1066 IPR003439 ABC transporter-like YPN_1066 IPR003593 AAA+ ATPase domain YPN_1066 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1067 IPR001851 ABC transporter, permease YPN_1068 IPR004104 Oxidoreductase, C-terminal YPN_1068 IPR030827 Inositol 2-dehydrogenase YPN_1068 IPR036291 NAD(P)-binding domain superfamily YPN_1068 IPR000683 Oxidoreductase, N-terminal YPN_1069 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPN_1069 IPR022841 5-dehydro-2-deoxygluconokinase, Firmicutes YPN_1069 IPR023314 5-Dehydro-2-deoxygluconokinase-like superfamily YPN_1069 IPR011611 Carbohydrate kinase PfkB YPN_1069 IPR030830 5-Dehydro-2-deoxygluconokinase YPN_1069 IPR029056 Ribokinase-like YPN_1070 IPR030823 IolE/MocC family YPN_1070 IPR036237 Xylose isomerase-like superfamily YPN_1070 IPR013022 Xylose isomerase-like, TIM barrel domain YPN_1071 IPR011051 RmlC-like cupin domain superfamily YPN_1071 IPR024203 5-deoxy-glucuronate isomerase, IolB YPN_1071 IPR023770 5-deoxy-glucuronate isomerase, Bacilli YPN_1071 IPR014710 RmlC-like jelly roll fold YPN_1071 IPR021120 KduI/IolB isomerase YPN_1073 IPR003439 ABC transporter-like YPN_1073 IPR017871 ABC transporter, conserved site YPN_1073 IPR011527 ABC transporter type 1, transmembrane domain YPN_1073 IPR039421 Type I protein exporter YPN_1073 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1073 IPR003593 AAA+ ATPase domain YPN_1073 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPN_1078 IPR016032 Signal transduction response regulator, C-terminal effector YPN_1078 IPR000792 Transcription regulator LuxR, C-terminal YPN_1079 IPR012340 Nucleic acid-binding, OB-fold YPN_1079 IPR019844 Cold-shock (CSD) domain YPN_1079 IPR002059 Cold-shock protein, DNA-binding YPN_1079 IPR011129 Cold shock domain YPN_1079 IPR012156 Cold shock, CspA YPN_1081 IPR003691 Putative fluoride ion transporter CrcB YPN_1082 IPR006312 Sec-independent protein translocase protein TatA/E YPN_1082 IPR024905 Sec-independent protein translocase protein TatE YPN_1082 IPR003369 Sec-independent protein translocase protein TatA/B/E YPN_1083 IPR013785 Aldolase-type TIM barrel YPN_1083 IPR031691 Lipoyl synthase, N-terminal YPN_1083 IPR007197 Radical SAM YPN_1083 IPR003698 Lipoyl synthase YPN_1083 IPR006638 Elp3/MiaB/NifB YPN_1084 IPR000544 Octanoyltransferase YPN_1084 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain YPN_1084 IPR020605 Octanoyltransferase, conserved site YPN_1085 IPR027471 YbeD-like domain superfamily YPN_1085 IPR007454 Uncharacterised protein family UPF0250 YPN_1086 IPR015956 Penicillin-binding protein, C-terminal domain superfamily YPN_1086 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal YPN_1086 IPR012338 Beta-lactamase/transpeptidase-like YPN_1086 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A YPN_1086 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily YPN_1086 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal YPN_1087 IPR036908 RlpA-like domain superfamily YPN_1087 IPR034718 Endolytic peptidoglycan transglycosylase RlpA YPN_1087 IPR036680 Sporulation-like domain superfamily YPN_1087 IPR007730 Sporulation-like domain YPN_1087 IPR012997 Rare lipoprotein A YPN_1087 IPR009009 RlpA-like protein, double-psi beta-barrel domain YPN_1088 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA YPN_1088 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site YPN_1088 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB YPN_1089 IPR001460 Penicillin-binding protein, transpeptidase YPN_1089 IPR017790 Penicillin-binding protein 2 YPN_1089 IPR005311 Penicillin-binding protein, dimerisation domain YPN_1089 IPR012338 Beta-lactamase/transpeptidase-like YPN_1089 IPR036138 Penicillin-binding protein, dimerisation domain superfamily YPN_1090 IPR029028 Alpha/beta knot methyltransferases YPN_1090 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPN_1090 IPR003742 RNA methyltransferase RlmH YPN_1091 IPR004394 Protein Iojap/ribosomal silencing factor RsfS YPN_1092 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase YPN_1092 IPR004821 Cytidyltransferase-like domain YPN_1092 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_1093 IPR032780 DNA polymerase III subunit delta, C-terminal YPN_1093 IPR005790 DNA polymerase III, delta subunit YPN_1093 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1093 IPR010372 DNA polymerase III delta, N-terminal YPN_1093 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YPN_1094 IPR007485 LPS-assembly lipoprotein LptE YPN_1095 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YPN_1095 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPN_1095 IPR002300 Aminoacyl-tRNA synthetase, class Ia YPN_1095 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain YPN_1095 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_1095 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding YPN_1095 IPR002302 Leucine-tRNA ligase YPN_1095 IPR025709 Leucyl-tRNA synthetase, editing domain YPN_1096 IPR009912 Zinc-ribbon containing domain YPN_1097 IPR003439 ABC transporter-like YPN_1097 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1097 IPR017871 ABC transporter, conserved site YPN_1097 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type YPN_1097 IPR003593 AAA+ ATPase domain YPN_1098 IPR030205 Glutamate/aspartate transport system permease protein GltK/AatM YPN_1098 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPN_1098 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_1098 IPR035906 MetI-like superfamily YPN_1099 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPN_1099 IPR030202 Glutamate/aspartate transport system permease protein GltJ/AatQ YPN_1099 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_1099 IPR035906 MetI-like superfamily YPN_1100 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPN_1101 IPR036526 Carbon-nitrogen hydrolase superfamily YPN_1101 IPR003010 Carbon-nitrogen hydrolase YPN_1101 IPR004563 Apolipoprotein N-acyltransferase YPN_1102 IPR036318 FAD-binding, type PCMH-like superfamily YPN_1102 IPR000644 CBS domain YPN_1102 IPR016169 FAD-binding, type PCMH, subdomain 2 YPN_1102 IPR005170 Transporter-associated domain YPN_1104 IPR023091 Metalloprotease catalytic domain superfamily, predicted YPN_1104 IPR020549 Endoribonuclease YbeY, conserved site YPN_1104 IPR002036 Endoribonuclease YbeY YPN_1105 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1105 IPR003714 PhoH-like protein YPN_1106 IPR007197 Radical SAM YPN_1106 IPR013848 Methylthiotransferase, N-terminal YPN_1106 IPR005839 Methylthiotransferase YPN_1106 IPR002792 TRAM domain YPN_1106 IPR023404 Radical SAM, alpha/beta horseshoe YPN_1106 IPR020612 Methylthiotransferase, conserved site YPN_1106 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB YPN_1106 IPR038135 Methylthiotransferase, N-terminal domain superfamily YPN_1106 IPR006638 Elp3/MiaB/NifB YPN_1107 IPR002938 FAD-binding domain YPN_1107 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 YPN_1107 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_1107 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site YPN_1109 IPR017932 Glutamine amidotransferase type 2 domain YPN_1109 IPR029055 Nucleophile aminohydrolases, N-terminal YPN_1109 IPR001962 Asparagine synthase YPN_1109 IPR006426 Asparagine synthase, glutamine-hydrolyzing YPN_1109 IPR033738 Asparagine synthase, N-terminal domain YPN_1109 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_1110 IPR023214 HAD superfamily YPN_1110 IPR036412 HAD-like superfamily YPN_1110 IPR006357 HAD-superfamily hydrolase, subfamily IIA YPN_1111 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1111 IPR000835 MarR-type HTH domain YPN_1111 IPR036390 Winged helix DNA-binding domain superfamily YPN_1111 IPR000600 ROK family YPN_1112 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPN_1112 IPR003764 N-acetylglucosamine-6-phosphate deacetylase YPN_1112 IPR032466 Metal-dependent hydrolase YPN_1112 IPR006680 Amidohydrolase-related YPN_1113 IPR018321 Glucosamine-6-phosphate isomerase, conserved site YPN_1113 IPR037171 NagB/RpiA transferase-like YPN_1113 IPR004547 Glucosamine-6-phosphate isomerase YPN_1113 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase YPN_1114 IPR013013 Phosphotransferase system, EIIC component, type 1 YPN_1114 IPR003352 Phosphotransferase system, EIIC YPN_1114 IPR036878 Glucose permease domain IIB YPN_1114 IPR011055 Duplicated hybrid motif YPN_1114 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component YPN_1114 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site YPN_1114 IPR001996 Phosphotransferase system, IIB component, type 1 YPN_1114 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 YPN_1115 IPR036515 Transposase IS200-like superfamily YPN_1115 IPR002686 Transposase IS200-like YPN_1116 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal YPN_1116 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPN_1116 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily YPN_1116 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_1116 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain YPN_1116 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain YPN_1116 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily YPN_1116 IPR004514 Glutamine-tRNA synthetase YPN_1116 IPR000924 Glutamyl/glutaminyl-tRNA synthetase YPN_1116 IPR022861 Glutamine-tRNA ligase, bacterial YPN_1117 IPR005318 Outer membrane porin, bacterial YPN_1117 IPR023614 Porin domain superfamily YPN_1118 IPR025705 Beta-hexosaminidase YPN_1118 IPR017853 Glycoside hydrolase superfamily YPN_1118 IPR014756 Immunoglobulin E-set YPN_1118 IPR015883 Glycoside hydrolase family 20, catalytic domain YPN_1118 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal YPN_1118 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily YPN_1118 IPR029018 Beta-hexosaminidase-like, domain 2 YPN_1118 IPR013783 Immunoglobulin-like fold YPN_1118 IPR012291 CBM2, carbohydrate-binding domain superfamily YPN_1118 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain YPN_1118 IPR004867 Chitobiase C-terminal domain YPN_1119 IPR012291 CBM2, carbohydrate-binding domain superfamily YPN_1119 IPR004867 Chitobiase C-terminal domain YPN_1119 IPR025705 Beta-hexosaminidase YPN_1119 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily YPN_1119 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain YPN_1119 IPR015883 Glycoside hydrolase family 20, catalytic domain YPN_1119 IPR029018 Beta-hexosaminidase-like, domain 2 YPN_1119 IPR017853 Glycoside hydrolase superfamily YPN_1119 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal YPN_1119 IPR013783 Immunoglobulin-like fold YPN_1119 IPR014756 Immunoglobulin E-set YPN_1120 IPR036390 Winged helix DNA-binding domain superfamily YPN_1120 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1120 IPR002481 Ferric-uptake regulator YPN_1121 IPR008254 Flavodoxin/nitric oxide synthase YPN_1121 IPR010086 Flavodoxin, long chain YPN_1121 IPR029039 Flavoprotein-like superfamily YPN_1121 IPR001226 Flavodoxin, conserved site YPN_1122 IPR002145 Ribbon-helix-helix protein, CopG YPN_1122 IPR010985 Ribbon-helix-helix YPN_1123 IPR000073 Alpha/beta hydrolase fold-1 YPN_1123 IPR029058 Alpha/Beta hydrolase fold YPN_1124 IPR025166 Integrase, DNA-binding domain YPN_1124 IPR002104 Integrase, catalytic domain YPN_1124 IPR013762 Integrase-like, catalytic domain superfamily YPN_1124 IPR010998 Integrase/recombinase, N-terminal YPN_1124 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPN_1124 IPR038488 Integrase, DNA-binding domain superfamily YPN_1125 IPR009057 Homeobox-like domain superfamily YPN_1125 IPR002514 Transposase IS3/IS911family YPN_1126 IPR010998 Integrase/recombinase, N-terminal YPN_1126 IPR025166 Integrase, DNA-binding domain YPN_1126 IPR038488 Integrase, DNA-binding domain superfamily YPN_1126 IPR002104 Integrase, catalytic domain YPN_1126 IPR013762 Integrase-like, catalytic domain superfamily YPN_1126 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPN_1127 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1127 IPR003593 AAA+ ATPase domain YPN_1127 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_1127 IPR002611 IstB-like ATP-binding protein YPN_1127 IPR001270 ClpA/B family YPN_1128 IPR002611 IstB-like ATP-binding protein YPN_1128 IPR003593 AAA+ ATPase domain YPN_1128 IPR001270 ClpA/B family YPN_1128 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_1128 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1129 IPR001584 Integrase, catalytic core YPN_1129 IPR012337 Ribonuclease H-like superfamily YPN_1129 IPR006120 Resolvase, HTH domain YPN_1129 IPR017894 HTH domain, IS21 transposase-type YPN_1129 IPR036397 Ribonuclease H superfamily YPN_1131 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain YPN_1132 IPR035906 MetI-like superfamily YPN_1132 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_1133 IPR003593 AAA+ ATPase domain YPN_1133 IPR003439 ABC transporter-like YPN_1133 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1133 IPR000644 CBS domain YPN_1133 IPR017871 ABC transporter, conserved site YPN_1133 IPR005892 Glycine betaine transport ATP-binding subunit YPN_1134 IPR000358 Ribonucleotide reductase small subunit family YPN_1134 IPR030475 Ribonucleotide reductase small subunit, acitve site YPN_1134 IPR026494 Ribonucleoside reductase subunit beta, NrdF YPN_1134 IPR012348 Ribonucleotide reductase-like YPN_1134 IPR009078 Ferritin-like superfamily YPN_1134 IPR033909 Ribonucleotide reductase small subunit YPN_1135 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE YPN_1135 IPR039718 Ribonucleoside-diphosphate reductase large subunit YPN_1135 IPR013554 Ribonucleotide reductase N-terminal YPN_1135 IPR000788 Ribonucleotide reductase large subunit, C-terminal YPN_1135 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal YPN_1135 IPR013346 Ribonucleotide reductase, class I , alpha subunit YPN_1135 IPR013509 Ribonucleotide reductase large subunit, N-terminal YPN_1136 IPR020852 Ribonucleotide reductase, class Ib, NrdI, bacterial YPN_1136 IPR004465 Ribonucleotide reductase Class Ib, NrdI YPN_1136 IPR029039 Flavoprotein-like superfamily YPN_1138 IPR023497 Acid shock protein YPN_1138 IPR009435 Acid shock YPN_1139 IPR018994 Protein of unknown function DUF2002 YPN_1140 IPR009587 Protein of unknown function DUF1198 YPN_1142 IPR012340 Nucleic acid-binding, OB-fold YPN_1142 IPR011129 Cold shock domain YPN_1142 IPR019844 Cold-shock (CSD) domain YPN_1142 IPR002059 Cold-shock protein, DNA-binding YPN_1142 IPR012156 Cold shock, CspA YPN_1143 IPR011980 Nickel ABC transporter, substrate-binding protein NikA YPN_1143 IPR039424 Solute-binding protein family 5 YPN_1143 IPR030678 Peptide/nickel binding protein, MppA-type YPN_1143 IPR000914 Solute-binding protein family 5 domain YPN_1143 IPR023765 Solute-binding protein family 5, conserved site YPN_1144 IPR035906 MetI-like superfamily YPN_1144 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_1145 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_1145 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPN_1145 IPR035906 MetI-like superfamily YPN_1146 IPR003593 AAA+ ATPase domain YPN_1146 IPR003439 ABC transporter-like YPN_1146 IPR015863 ABC transporter, hemin import, HmuV YPN_1146 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1146 IPR017871 ABC transporter, conserved site YPN_1147 IPR017871 ABC transporter, conserved site YPN_1147 IPR015858 ABC transporter, nickel import, NikE YPN_1147 IPR014137 Nickel import ATP-binding protein NikE YPN_1147 IPR003439 ABC transporter-like YPN_1147 IPR003593 AAA+ ATPase domain YPN_1147 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1149 IPR002026 Urease, gamma/gamma-beta subunit YPN_1149 IPR036463 Urease, gamma subunit superfamily YPN_1149 IPR012010 Urease, gamma subunit YPN_1150 IPR036461 Urease, beta subunit superfamily YPN_1150 IPR002019 Urease, beta subunit YPN_1151 IPR029754 Urease nickel binding site YPN_1151 IPR017951 Urease alpha subunit, C-terminal YPN_1151 IPR017950 Urease active site YPN_1151 IPR011612 Urease alpha-subunit, N-terminal domain YPN_1151 IPR005848 Urease, alpha subunit YPN_1151 IPR006680 Amidohydrolase-related YPN_1151 IPR032466 Metal-dependent hydrolase YPN_1151 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPN_1152 IPR012406 Urease accessory protein UreE YPN_1152 IPR007864 Urease accessory protein UreE, C-terminal domain YPN_1152 IPR004029 UreE urease accessory, N-terminal YPN_1152 IPR036118 UreE urease accessory, N-terminal domain superfamily YPN_1153 IPR038277 UreF domain superfamily YPN_1153 IPR002639 Urease accessory protein UreF YPN_1154 IPR004400 Urease accessory protein UreG YPN_1154 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1154 IPR003495 CobW/HypB/UreG, nucleotide-binding domain YPN_1155 IPR002669 Urease accessory protein UreD YPN_1156 IPR002669 Urease accessory protein UreD YPN_1157 IPR004937 Urea transporter YPN_1157 IPR029020 Ammonium/urea transporter YPN_1158 IPR011541 Nickel/cobalt transporter, high-affinity YPN_1158 IPR004688 Transition metal uptake transporter nickel/cobalt YPN_1159 IPR038303 HNS-dependent expression A/B superfamily YPN_1159 IPR028623 HNS-dependent expression B YPN_1159 IPR010486 HNS-dependent expression A/B YPN_1160 IPR036291 NAD(P)-binding domain superfamily YPN_1160 IPR013099 Potassium channel domain YPN_1160 IPR003148 Regulator of K+ conductance, N-terminal YPN_1161 IPR003691 Putative fluoride ion transporter CrcB YPN_1162 IPR003691 Putative fluoride ion transporter CrcB YPN_1164 IPR036095 PTS system IIB component-like superfamily YPN_1164 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPN_1164 IPR013012 Phosphotransferase system, EIIB component, type 3 YPN_1165 IPR003352 Phosphotransferase system, EIIC YPN_1165 IPR004796 Phosphotransferase system, cellobiose-type IIC component YPN_1165 IPR004501 Phosphotransferase system, EIIC component, type 3 YPN_1166 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit YPN_1166 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily YPN_1167 IPR009057 Homeobox-like domain superfamily YPN_1167 IPR013096 Cupin 2, conserved barrel YPN_1167 IPR014710 RmlC-like jelly roll fold YPN_1167 IPR018060 DNA binding HTH domain, AraC-type YPN_1167 IPR018062 HTH domain AraC-type, conserved site YPN_1167 IPR011051 RmlC-like cupin domain superfamily YPN_1167 IPR020449 Transcription regulator HTH, AraC- type YPN_1168 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPN_1168 IPR022948 Chitooligosaccharide deacetylase ChbG-like, bacteria YPN_1168 IPR006879 Carbohydrate deacetylase YdjC-like YPN_1170 IPR013321 Arc-type ribbon-helix-helix YPN_1170 IPR033761 Negative modulator of initiation of replication SeqA, N-terminal YPN_1170 IPR005621 Negative modulator of initiation of replication SeqA YPN_1170 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain YPN_1170 IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily YPN_1170 IPR010985 Ribbon-helix-helix YPN_1171 IPR005852 Phosphoglucomutase, alpha-D-glucose specific YPN_1171 IPR016066 Alpha-D-phosphohexomutase, conserved site YPN_1171 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily YPN_1171 IPR005843 Alpha-D-phosphohexomutase, C-terminal YPN_1171 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YPN_1171 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YPN_1171 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YPN_1171 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YPN_1175 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1175 IPR039420 Transcriptional regulatory protein WalR-like YPN_1175 IPR011006 CheY-like superfamily YPN_1175 IPR001789 Signal transduction response regulator, receiver domain YPN_1175 IPR001867 OmpR/PhoB-type DNA-binding domain YPN_1176 IPR003018 GAF domain YPN_1176 IPR029016 GAF-like domain superfamily YPN_1176 IPR003594 Histidine kinase/HSP90-like ATPase YPN_1176 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPN_1176 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_1176 IPR005467 Histidine kinase domain YPN_1176 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPN_1176 IPR038318 KdpD, transmembrane domain superfamily YPN_1176 IPR025201 Sensor protein KdpD, transmembrane domain YPN_1176 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPN_1176 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal YPN_1177 IPR003820 Potassium-transporting ATPase C chain YPN_1178 IPR006391 P-type ATPase, B chain, subfamily IA YPN_1178 IPR023299 P-type ATPase, cytoplasmic domain N YPN_1178 IPR018303 P-type ATPase, phosphorylation site YPN_1178 IPR023298 P-type ATPase, transmembrane domain superfamily YPN_1178 IPR008250 P-type ATPase, A domain superfamily YPN_1178 IPR001757 P-type ATPase YPN_1178 IPR036412 HAD-like superfamily YPN_1179 IPR004623 Potassium-transporting ATPase A chain YPN_1181 IPR019663 Uncharacterised protein YbfA YPN_1182 IPR013560 Domain of unknown function DUF1722 YPN_1183 IPR002081 Cryptochrome/DNA photolyase class 1 YPN_1183 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_1183 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily YPN_1183 IPR006050 DNA photolyase, N-terminal YPN_1183 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal YPN_1183 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily YPN_1183 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain YPN_1184 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPN_1184 IPR024225 Cyclic-AMP phosphodiesterase class-II, conserved site YPN_1184 IPR000396 Cyclic-AMP phosphodiesterase, class-II YPN_1185 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily YPN_1185 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 YPN_1186 IPR003833 Carboxyltransferase domain, subdomain C and D YPN_1186 IPR010016 KipI family YPN_1186 IPR029000 Cyclophilin-like domain superfamily YPN_1187 IPR003778 Carboxyltransferase domain, subdomain A and B YPN_1187 IPR029000 Cyclophilin-like domain superfamily YPN_1188 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPN_1188 IPR005501 LamB/YcsF/PxpA-like YPN_1191 IPR000816 Peptidase C15, pyroglutamyl peptidase I YPN_1191 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like YPN_1191 IPR033693 Pyroglutamyl peptidase I, Glu active site YPN_1191 IPR033694 Pyroglutamyl peptidase I, Cys active site YPN_1191 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily YPN_1191 IPR029762 Pyroglutamyl peptidase I, bacterial-type YPN_1192 IPR005122 Uracil-DNA glycosylase-like YPN_1192 IPR018085 Uracil-DNA glycosylase, active site YPN_1192 IPR002043 Uracil-DNA glycosylase family 1 YPN_1192 IPR036895 Uracil-DNA glycosylase-like domain superfamily YPN_1193 IPR011140 Autonomous glycyl radical cofactor GrcA YPN_1193 IPR019777 Formate C-acetyltransferase glycine radical, conserved site YPN_1193 IPR001150 Glycine radical domain YPN_1194 IPR029058 Alpha/Beta hydrolase fold YPN_1195 IPR020683 Ankyrin repeat-containing domain YPN_1195 IPR036770 Ankyrin repeat-containing domain superfamily YPN_1195 IPR002110 Ankyrin repeat YPN_1196 IPR028621 ATP-dependent RNA helicase SrmB YPN_1196 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPN_1196 IPR001650 Helicase, C-terminal YPN_1196 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPN_1196 IPR011545 DEAD/DEAH box helicase domain YPN_1196 IPR014014 RNA helicase, DEAD-box type, Q motif YPN_1196 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1197 IPR022882 tRNA1(Val) (adenine(37)-N6)-methyltransferase YPN_1197 IPR007848 Methyltransferase small domain YPN_1197 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_1197 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPN_1198 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily YPN_1198 IPR005288 L-aspartate oxidase YPN_1198 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_1198 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain YPN_1198 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily YPN_1198 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal YPN_1199 IPR013324 RNA polymerase sigma factor, region 3/4-like YPN_1199 IPR014286 RNA polymerase sigma-70 RpoE type YPN_1199 IPR039425 RNA polymerase sigma-70 like YPN_1199 IPR007627 RNA polymerase sigma-70 region 2 YPN_1199 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1199 IPR014284 RNA polymerase sigma-70 like domain YPN_1199 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site YPN_1199 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 YPN_1199 IPR013325 RNA polymerase sigma factor, region 2 YPN_1200 IPR026279 Sigma-E factor negative regulatory protein RseA YPN_1200 IPR005573 Anti sigma-E protein RseA, C-terminal YPN_1200 IPR005572 Anti sigma-E protein RseA, N-terminal YPN_1200 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily YPN_1201 IPR033436 MucB/RseB, C-terminal YPN_1201 IPR038484 MucB/RseB, C-terminal domain superfamily YPN_1201 IPR033434 MucB/RseB, N-terminal YPN_1201 IPR005588 MucB/RseB YPN_1202 IPR026268 Protein RseC YPN_1202 IPR007359 Positive regulator of sigma(E), RseC/MucC YPN_1204 IPR035654 Elongation factor 4, domain IV YPN_1204 IPR000795 Transcription factor, GTP-binding domain YPN_1204 IPR005225 Small GTP-binding protein domain YPN_1204 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1204 IPR013842 GTP-binding protein LepA, C-terminal YPN_1204 IPR038363 LepA, C-terminal domain superfamily YPN_1204 IPR031157 Tr-type G domain, conserved site YPN_1204 IPR004161 Translation elongation factor EFTu-like, domain 2 YPN_1204 IPR000640 Elongation factor EFG, domain V-like YPN_1204 IPR035647 EF-G domain III/V-like YPN_1204 IPR006297 Elongation factor 4 YPN_1205 IPR019758 Peptidase S26A, signal peptidase I, conserved site YPN_1205 IPR019756 Peptidase S26A, signal peptidase I, serine active site YPN_1205 IPR019757 Peptidase S26A, signal peptidase I, lysine active site YPN_1205 IPR019533 Peptidase S26 YPN_1205 IPR036286 LexA/Signal peptidase-like superfamily YPN_1205 IPR000223 Peptidase S26A, signal peptidase I YPN_1206 IPR014720 Double-stranded RNA-binding domain YPN_1206 IPR036389 Ribonuclease III, endonuclease domain superfamily YPN_1206 IPR000999 Ribonuclease III domain YPN_1206 IPR011907 Ribonuclease III YPN_1207 IPR005225 Small GTP-binding protein domain YPN_1207 IPR005662 GTP-binding protein Era YPN_1207 IPR015946 K homology domain-like, alpha/beta YPN_1207 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1207 IPR030388 Era-type guanine nucleotide-binding (G) domain YPN_1207 IPR006073 GTP binding domain YPN_1207 IPR004044 K Homology domain, type 2 YPN_1207 IPR009019 K homology domain superfamily, prokaryotic type YPN_1208 IPR003717 Recombination protein O, RecO YPN_1208 IPR022572 DNA replication/recombination mediator RecO, N-terminal YPN_1208 IPR012340 Nucleic acid-binding, OB-fold YPN_1208 IPR037278 ARFGAP/RecO-like zinc finger YPN_1209 IPR013785 Aldolase-type TIM barrel YPN_1209 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ YPN_1209 IPR036130 Pyridoxine 5'-phosphate synthase YPN_1210 IPR004568 Phosphopantetheine-protein transferase domain YPN_1210 IPR002582 Holo-[acyl carrier protein] synthase YPN_1210 IPR037143 4'-phosphopantetheinyl transferase domain superfamily YPN_1210 IPR008278 4'-phosphopantetheinyl transferase domain YPN_1211 IPR002686 Transposase IS200-like YPN_1211 IPR036515 Transposase IS200-like superfamily YPN_1212 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPN_1212 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPN_1213 IPR009057 Homeobox-like domain superfamily YPN_1213 IPR000281 Helix-turn-helix protein RpiR YPN_1213 IPR001347 Sugar isomerase (SIS) YPN_1213 IPR035472 RpiR-like, SIS domain YPN_1213 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1214 IPR040190 N-acetylmuramic acid 6-phosphate etherase/glucokinase regulatory protein YPN_1214 IPR009060 UBA-like superfamily YPN_1214 IPR001347 Sugar isomerase (SIS) YPN_1214 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ YPN_1214 IPR005486 Glucokinase regulatory protein, conserved site YPN_1215 IPR023214 HAD superfamily YPN_1215 IPR036412 HAD-like superfamily YPN_1215 IPR006435 HAD-superfamily hydrolase, subfamily IF, YfhB YPN_1216 IPR016193 Cytidine deaminase-like YPN_1216 IPR002125 Cytidine and deoxycytidylate deaminase domain YPN_1216 IPR028883 tRNA-specific adenosine deaminase YPN_1216 IPR016192 APOBEC/CMP deaminase, zinc-binding YPN_1217 IPR023346 Lysozyme-like domain superfamily YPN_1217 IPR023703 Membrane-bound lytic murein transglycosylase F YPN_1217 IPR000189 Prokaryotic transglycosylase, active site YPN_1217 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPN_1217 IPR008258 Transglycosylase SLT domain 1 YPN_1218 IPR010073 Phosphoribosylformylglycinamidine synthase PurL YPN_1218 IPR041609 Phosphoribosylformylglycinamidine synthase, linker domain YPN_1218 IPR036676 PurM-like, C-terminal domain superfamily YPN_1218 IPR017926 Glutamine amidotransferase YPN_1218 IPR036921 PurM-like, N-terminal domain superfamily YPN_1218 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily YPN_1218 IPR010918 PurM-like, C-terminal domain YPN_1218 IPR040707 Phosphoribosylformylglycinamidine synthase, N-terminal YPN_1218 IPR029062 Class I glutamine amidotransferase-like YPN_1222 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPN_1222 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPN_1222 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPN_1222 IPR005467 Histidine kinase domain YPN_1222 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_1222 IPR003594 Histidine kinase/HSP90-like ATPase YPN_1223 IPR025262 Quorum-sensing regulator protein G YPN_1224 IPR003593 AAA+ ATPase domain YPN_1224 IPR011006 CheY-like superfamily YPN_1224 IPR002078 RNA polymerase sigma factor 54 interaction domain YPN_1224 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPN_1224 IPR025944 Sigma-54 interaction domain, conserved site YPN_1224 IPR009057 Homeobox-like domain superfamily YPN_1224 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPN_1224 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1224 IPR001789 Signal transduction response regulator, receiver domain YPN_1225 IPR003694 NAD(+) synthetase YPN_1225 IPR014445 Glutamine-dependent NAD(+) synthetase YPN_1225 IPR003010 Carbon-nitrogen hydrolase YPN_1225 IPR022310 NAD/GMP synthase YPN_1225 IPR036526 Carbon-nitrogen hydrolase superfamily YPN_1225 IPR000132 Nitrilase/cyanide hydratase, conserved site YPN_1225 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_1226 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPN_1226 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPN_1226 IPR017918 Nitrogen regulatory protein PII, conserved site YPN_1226 IPR002332 Nitrogen regulatory protein P-II, urydylation site YPN_1226 IPR002187 Nitrogen regulatory protein PII YPN_1227 IPR041444 YhfZ, helix-turn-helix domain YPN_1227 IPR032791 Uncharacterised protein YhfZ, C-terminal domain YPN_1228 IPR002611 IstB-like ATP-binding protein YPN_1228 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1228 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_1228 IPR001270 ClpA/B family YPN_1228 IPR003593 AAA+ ATPase domain YPN_1229 IPR006120 Resolvase, HTH domain YPN_1229 IPR012337 Ribonuclease H-like superfamily YPN_1229 IPR036397 Ribonuclease H superfamily YPN_1229 IPR017894 HTH domain, IS21 transposase-type YPN_1229 IPR001584 Integrase, catalytic core YPN_1230 IPR041444 YhfZ, helix-turn-helix domain YPN_1230 IPR032791 Uncharacterised protein YhfZ, C-terminal domain YPN_1231 IPR009050 Globin-like superfamily YPN_1231 IPR017927 FAD-binding domain, ferredoxin reductase-type YPN_1231 IPR023950 Flavohemoprotein YPN_1231 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase YPN_1231 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPN_1231 IPR000971 Globin YPN_1231 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPN_1231 IPR017938 Riboflavin synthase-like beta-barrel YPN_1231 IPR012292 Globin/Protoglobin YPN_1231 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPN_1232 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_1232 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site YPN_1232 IPR039429 Serine hydroxymethyltransferase-like domain YPN_1232 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_1232 IPR015424 Pyridoxal phosphate-dependent transferase YPN_1232 IPR001085 Serine hydroxymethyltransferase YPN_1233 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPN_1233 IPR027385 Outer membrane protein beta-barrel domain YPN_1233 IPR000758 Virulence-related outer membrane protein YPN_1234 IPR026032 Probable 3-phenylpropionic acid transporter YPN_1234 IPR036259 MFS transporter superfamily YPN_1234 IPR024989 Major facilitator superfamily associated domain YPN_1235 IPR036634 PRD domain superfamily YPN_1235 IPR011608 PRD domain YPN_1236 IPR016537 Uncharacterised conserved protein UCP008159, YPN_1236 IPR010412 Protein of unknown function DUF1007 YPN_1237 IPR011541 Nickel/cobalt transporter, high-affinity YPN_1238 IPR020583 Inositol monophosphatase, metal-binding site YPN_1238 IPR033942 Inositol monophosphatase YPN_1238 IPR020550 Inositol monophosphatase, conserved site YPN_1238 IPR022337 Inositol monophosphatase, SuhB YPN_1238 IPR000760 Inositol monophosphatase-like YPN_1239 IPR029028 Alpha/beta knot methyltransferases YPN_1239 IPR004384 RNA methyltransferase TrmJ/LasT YPN_1239 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPN_1239 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPN_1240 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1240 IPR010242 Transcription factor HTH, IscR YPN_1240 IPR030489 Transcription regulator Rrf2-type, conserved site YPN_1240 IPR000944 Transcription regulator Rrf2-type YPN_1240 IPR036390 Winged helix DNA-binding domain superfamily YPN_1241 IPR000192 Aminotransferase class V domain YPN_1241 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPN_1241 IPR010240 Cysteine desulfurase IscS YPN_1241 IPR016454 Cysteine desulfurase YPN_1241 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_1241 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_1241 IPR015424 Pyridoxal phosphate-dependent transferase YPN_1242 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal YPN_1242 IPR011339 ISC system FeS cluster assembly, IscU scaffold YPN_1243 IPR011302 Iron-binding protein IscA, proteobacteria YPN_1243 IPR035903 HesB-like domain superfamily YPN_1243 IPR000361 FeS cluster biogenesis YPN_1243 IPR016092 FeS cluster insertion protein YPN_1243 IPR017870 FeS cluster insertion, C-terminal, conserved site YPN_1244 IPR036386 HscB, C-terminal domain superfamily YPN_1244 IPR004640 Co-chaperone Hsc20 YPN_1244 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain YPN_1244 IPR036869 Chaperone J-domain superfamily YPN_1244 IPR001623 DnaJ domain YPN_1245 IPR010236 ISC system FeS cluster assembly, HscA chaperone YPN_1245 IPR013126 Heat shock protein 70 family YPN_1245 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily YPN_1245 IPR042039 HscA chaperone, nucleotide-binding domain YPN_1245 IPR018181 Heat shock protein 70, conserved site YPN_1245 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily YPN_1246 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria YPN_1246 IPR036010 2Fe-2S ferredoxin-like superfamily YPN_1246 IPR012675 Beta-grasp domain superfamily YPN_1246 IPR018298 Adrenodoxin, iron-sulphur binding site YPN_1246 IPR001055 Adrenodoxin YPN_1246 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPN_1247 IPR036762 IscX-like superfamily YPN_1247 IPR007479 ISC system FeS cluster assembly, IscX YPN_1248 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B YPN_1248 IPR008330 Peptidase M17, peptidase B YPN_1248 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal YPN_1248 IPR001346 Interferon regulatory factor DNA-binding domain YPN_1249 IPR027945 SseB protein, C-terminal YPN_1249 IPR009839 SseB protein N-terminal domain YPN_1251 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPN_1251 IPR006315 Outer membrane autotransporter barrel YPN_1251 IPR036709 Autotransporter beta-domain superfamily YPN_1251 IPR003991 Pertactin virulence factor family YPN_1251 IPR030930 Adhesin of bacterial autotransporter system YPN_1251 IPR005546 Autotransporter beta-domain YPN_1251 IPR004899 Pertactin, central region YPN_1251 IPR011050 Pectin lyase fold/virulence factor YPN_1252 IPR005546 Autotransporter beta-domain YPN_1252 IPR030930 Adhesin of bacterial autotransporter system YPN_1252 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPN_1252 IPR006315 Outer membrane autotransporter barrel YPN_1252 IPR003991 Pertactin virulence factor family YPN_1252 IPR004899 Pertactin, central region YPN_1252 IPR011050 Pectin lyase fold/virulence factor YPN_1252 IPR036709 Autotransporter beta-domain superfamily YPN_1255 IPR036850 Nucleoside diphosphate kinase-like domain superfamily YPN_1255 IPR001564 Nucleoside diphosphate kinase YPN_1255 IPR023005 Nucleoside diphosphate kinase, active site YPN_1255 IPR034907 Nucleoside diphosphate kinase-like domain YPN_1256 IPR013785 Aldolase-type TIM barrel YPN_1256 IPR040072 Methyltransferase (Class A) YPN_1256 IPR027492 Dual-specificity RNA methyltransferase RlmN YPN_1256 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr YPN_1256 IPR007197 Radical SAM YPN_1258 IPR001387 Cro/C1-type helix-turn-helix domain YPN_1258 IPR025194 Domain of unknown function DUF4115 YPN_1258 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPN_1258 IPR023690 Cytoskeleton protein RodZ YPN_1259 IPR011005 Dihydropteroate synthase-like YPN_1259 IPR036849 Enolase-like, C-terminal domain superfamily YPN_1259 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial YPN_1259 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type YPN_1260 IPR004154 Anticodon-binding YPN_1260 IPR006195 Aminoacyl-tRNA synthetase, class II YPN_1260 IPR036621 Anticodon-binding domain superfamily YPN_1260 IPR015807 Histidine-tRNA ligase YPN_1260 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain YPN_1260 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit YPN_1260 IPR033656 Histidyl-anticodon-binding YPN_1261 IPR026039 Uncharacterised protein family UPF0070 YPN_1261 IPR018704 Tetratricopeptide repeat-like domain YPN_1261 IPR011990 Tetratricopeptide-like helical domain superfamily YPN_1262 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily YPN_1262 IPR015943 WD40/YVTN repeat-like-containing domain superfamily YPN_1262 IPR002372 Pyrrolo-quinoline quinone repeat YPN_1262 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat YPN_1262 IPR017687 Outer membrane protein assembly factor BamB YPN_1263 IPR016484 GTP-binding protein EngA YPN_1263 IPR031166 EngA-type guanine nucleotide-binding (G) domain YPN_1263 IPR006073 GTP binding domain YPN_1263 IPR015946 K homology domain-like, alpha/beta YPN_1263 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1263 IPR005225 Small GTP-binding protein domain YPN_1263 IPR032859 GTPase Der, C-terminal KH-domain-like YPN_1265 IPR029037 YfgJ-like YPN_1265 IPR010807 Protein of unknown function DUF1407 YPN_1266 IPR003753 Exonuclease VII, large subunit YPN_1266 IPR025824 OB-fold nucleic acid binding domain YPN_1266 IPR020579 Exonuclease VII, large subunit, C-terminal YPN_1267 IPR000644 CBS domain YPN_1267 IPR013785 Aldolase-type TIM barrel YPN_1267 IPR001093 IMP dehydrogenase/GMP reductase YPN_1267 IPR015875 IMP dehydrogenase / GMP reductase, conserved site YPN_1267 IPR005990 Inosine-5'-monophosphate dehydrogenase YPN_1268 IPR001674 GMP synthase, C-terminal YPN_1268 IPR017926 Glutamine amidotransferase YPN_1268 IPR004739 GMP synthase, glutamine amidotransferase YPN_1268 IPR022955 GMP synthase YPN_1268 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_1268 IPR029062 Class I glutamine amidotransferase-like YPN_1268 IPR022310 NAD/GMP synthase YPN_1268 IPR025777 GMP synthetase ATP pyrophosphatase domain YPN_1269 IPR036515 Transposase IS200-like superfamily YPN_1269 IPR002686 Transposase IS200-like YPN_1270 IPR036624 Hcp1-like superfamily YPN_1270 IPR008514 Type VI secretion system effector, Hcp YPN_1275 IPR001207 Transposase, mutator type YPN_1278 IPR029056 Ribokinase-like YPN_1278 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase YPN_1278 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase YPN_1281 IPR014453 Inhibitor of vertebrate lysozyme YPN_1281 IPR036501 Inhibitor of vertebrate lysozyme superfamily YPN_1282 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal YPN_1282 IPR005218 Diacylglycerol/lipid kinase YPN_1282 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily YPN_1282 IPR001206 Diacylglycerol kinase, catalytic domain YPN_1282 IPR022433 Lipid kinase YegS YPN_1284 IPR010879 Domain of unknown function DUF1508 YPN_1284 IPR036913 YegP-like superfamily YPN_1285 IPR011006 CheY-like superfamily YPN_1285 IPR016032 Signal transduction response regulator, C-terminal effector YPN_1285 IPR001789 Signal transduction response regulator, receiver domain YPN_1285 IPR001867 OmpR/PhoB-type DNA-binding domain YPN_1285 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1285 IPR039420 Transcriptional regulatory protein WalR-like YPN_1286 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPN_1286 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPN_1286 IPR003594 Histidine kinase/HSP90-like ATPase YPN_1286 IPR005467 Histidine kinase domain YPN_1286 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_1286 IPR003660 HAMP domain YPN_1286 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPN_1287 IPR003594 Histidine kinase/HSP90-like ATPase YPN_1287 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPN_1287 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPN_1287 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPN_1287 IPR005467 Histidine kinase domain YPN_1287 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_1287 IPR003660 HAMP domain YPN_1288 IPR011701 Major facilitator superfamily YPN_1288 IPR036259 MFS transporter superfamily YPN_1288 IPR023721 Multidrug resistance protein MdtD YPN_1288 IPR020846 Major facilitator superfamily domain YPN_1288 IPR004638 Drug resistance transporter EmrB-like YPN_1289 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPN_1289 IPR023931 Multidrug resistance protein MdtC YPN_1289 IPR001036 Acriflavin resistance protein YPN_1290 IPR022831 Multidrug resistance protein MdtB YPN_1290 IPR001036 Acriflavin resistance protein YPN_1290 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPN_1291 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YPN_1291 IPR022824 Multidrug resistance protein MdtA YPN_1291 IPR006143 RND efflux pump, membrane fusion protein YPN_1292 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit YPN_1292 IPR013611 Transport-associated OB, type 2 YPN_1292 IPR003593 AAA+ ATPase domain YPN_1292 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA YPN_1292 IPR003439 ABC transporter-like YPN_1292 IPR017871 ABC transporter, conserved site YPN_1292 IPR008995 Molybdate/tungstate binding, C-terminal YPN_1292 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1293 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1293 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_1293 IPR015424 Pyridoxal phosphate-dependent transferase YPN_1293 IPR004839 Aminotransferase, class I/classII YPN_1293 IPR036390 Winged helix DNA-binding domain superfamily YPN_1293 IPR000524 Transcription regulator HTH, GntR YPN_1294 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_1294 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_1294 IPR004632 4-aminobutyrate aminotransferase, bacterial YPN_1294 IPR015424 Pyridoxal phosphate-dependent transferase YPN_1294 IPR005814 Aminotransferase class-III YPN_1296 IPR035906 MetI-like superfamily YPN_1296 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_1297 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_1297 IPR035906 MetI-like superfamily YPN_1298 IPR013126 Heat shock protein 70 family YPN_1298 IPR042054 YegD-like YPN_1298 IPR018181 Heat shock protein 70, conserved site YPN_1299 IPR006667 SLC41 divalent cation transporters, integral membrane domain YPN_1299 IPR006668 Magnesium transporter, MgtE intracellular domain YPN_1299 IPR000644 CBS domain YPN_1299 IPR006669 Magnesium transporter MgtE YPN_1299 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily YPN_1299 IPR038048 Magnesium transporter MgtE, transmembrane domain YPN_1299 IPR038076 MgtE, N-terminal domain superfamily YPN_1300 IPR022371 Exopolyphosphatase YPN_1300 IPR003695 Ppx/GppA phosphatase YPN_1300 IPR030673 Pyrophosphatase, GppA/Ppx-type YPN_1301 IPR036832 Polyphosphate kinase N-terminal domain superfamily YPN_1301 IPR025198 Polyphosphate kinase N-terminal domain YPN_1301 IPR025200 Polyphosphate kinase C-terminal domain 2 YPN_1301 IPR036830 Polyphosphate kinase middle domain superfamily YPN_1301 IPR024953 Polyphosphate kinase middle domain YPN_1301 IPR001736 Phospholipase D/Transphosphatidylase YPN_1301 IPR003414 Polyphosphate kinase YPN_1301 IPR041108 Polyphosphate kinase, C-terminal domain 1 YPN_1303 IPR035906 MetI-like superfamily YPN_1303 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_1303 IPR011864 Phosphate ABC transporter, permease protein PstC YPN_1304 IPR035906 MetI-like superfamily YPN_1304 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_1304 IPR005672 Phosphate transport system permease protein PstA YPN_1305 IPR003593 AAA+ ATPase domain YPN_1305 IPR015850 ABC transporter, phosphate import, PstB YPN_1305 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1305 IPR017871 ABC transporter, conserved site YPN_1305 IPR005670 Phosphate transport system permease protein 1 YPN_1305 IPR003439 ABC transporter-like YPN_1308 IPR000182 GNAT domain YPN_1308 IPR016181 Acyl-CoA N-acyltransferase YPN_1309 IPR004607 Phosphoribosylglycinamide formyltransferase YPN_1309 IPR036477 Formyl transferase, N-terminal domain superfamily YPN_1309 IPR002376 Formyl transferase, N-terminal YPN_1309 IPR001555 Phosphoribosylglycinamide formyltransferase, active site YPN_1310 IPR016188 PurM-like, N-terminal domain YPN_1310 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase YPN_1310 IPR036676 PurM-like, C-terminal domain superfamily YPN_1310 IPR036921 PurM-like, N-terminal domain superfamily YPN_1310 IPR010918 PurM-like, C-terminal domain YPN_1311 IPR005765 Uracil phosphoribosyl transferase YPN_1311 IPR034332 Uracil phosphoribosyltransferase, bacterial-type YPN_1311 IPR029057 Phosphoribosyltransferase-like YPN_1311 IPR000836 Phosphoribosyltransferase domain YPN_1312 IPR036515 Transposase IS200-like superfamily YPN_1312 IPR002686 Transposase IS200-like YPN_1313 IPR022864 DnaA regulatory inactivator Hda, Enterobacteriaceae YPN_1313 IPR017788 DnaA regulatory inactivator Hda YPN_1313 IPR020591 Chromosomal replication control, initiator DnaA-like YPN_1313 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1313 IPR013317 Chromosomal replication initiator protein DnaA YPN_1314 IPR006659 Arsenate reductase YPN_1314 IPR006660 Arsenate reductase-like YPN_1314 IPR036249 Thioredoxin-like superfamily YPN_1315 IPR011990 Tetratricopeptide-like helical domain superfamily YPN_1315 IPR001915 Peptidase M48 YPN_1315 IPR011716 Tetratricopeptide TPR-3 YPN_1315 IPR030873 Beta-barrel assembly-enhancing protease YPN_1316 IPR002549 Transmembrane protein TqsA-like YPN_1321 IPR013766 Thioredoxin domain YPN_1321 IPR036249 Thioredoxin-like superfamily YPN_1321 IPR024706 Peroxiredoxin, AhpC-type YPN_1321 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant YPN_1322 IPR002912 ACT domain YPN_1322 IPR016867 Glycine cleavage system transcriptional repressor YPN_1323 IPR013785 Aldolase-type TIM barrel YPN_1323 IPR002220 DapA-like YPN_1323 IPR020624 Schiff base-forming aldolase, conserved site YPN_1323 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA YPN_1323 IPR020625 Schiff base-forming aldolase, active site YPN_1324 IPR042268 Outer membrane protein assembly factor BamC, C-terminal YPN_1324 IPR014524 Outer membrane protein assembly factor BamC YPN_1324 IPR010653 NlpB/DapX lipoprotein YPN_1325 IPR002686 Transposase IS200-like YPN_1325 IPR036515 Transposase IS200-like superfamily YPN_1326 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase YPN_1326 IPR033934 Bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide synthase YPN_1326 IPR028923 SAICAR synthetase/ADE2, N-terminal YPN_1326 IPR018236 SAICAR synthetase, conserved site YPN_1327 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative YPN_1328 IPR007382 Uncharacterised protein family UPF0756, transmembrame YPN_1329 IPR013562 tRNA(Met) cytidine acetyltransferase TmcA, N-terminal YPN_1329 IPR032672 TmcA/NAT10/Kre33 YPN_1329 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1329 IPR007807 Helicase domain YPN_1329 IPR000182 GNAT domain YPN_1329 IPR016181 Acyl-CoA N-acyltransferase YPN_1329 IPR033442 tRNA(Met) cytidine acetyltransferase TmcA, tRNA-binding domain YPN_1329 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA YPN_1329 IPR038321 TmcA, C-terminal domain superfamily YPN_1330 IPR020910 Uncharacterised protein family UPF0370 YPN_1331 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily YPN_1331 IPR003709 Peptidase M15B YPN_1332 IPR036264 Bacterial exopeptidase dimerisation domain YPN_1332 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YPN_1332 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria YPN_1332 IPR002933 Peptidase M20 YPN_1332 IPR011650 Peptidase M20, dimerisation domain YPN_1333 IPR036249 Thioredoxin-like superfamily YPN_1333 IPR006660 Arsenate reductase-like YPN_1333 IPR006504 Transcriptional regulator Spx/MgsR YPN_1336 IPR035906 MetI-like superfamily YPN_1336 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_1337 IPR003439 ABC transporter-like YPN_1337 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA YPN_1337 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1337 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit YPN_1337 IPR003593 AAA+ ATPase domain YPN_1337 IPR013611 Transport-associated OB, type 2 YPN_1337 IPR017871 ABC transporter, conserved site YPN_1337 IPR008995 Molybdate/tungstate binding, C-terminal YPN_1338 IPR024607 Sulfatase, conserved site YPN_1338 IPR000917 Sulfatase, N-terminal YPN_1338 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPN_1339 IPR007197 Radical SAM YPN_1339 IPR023885 4Fe4S-binding SPASM domain YPN_1339 IPR013785 Aldolase-type TIM barrel YPN_1339 IPR034491 Anaerobic Ser-type sulfatase-maturating enzyme YPN_1340 IPR007404 LexA-binding, inner membrane-associated putative hydrolase YPN_1342 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPN_1342 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 YPN_1342 IPR001036 Acriflavin resistance protein YPN_1344 IPR011006 CheY-like superfamily YPN_1344 IPR000792 Transcription regulator LuxR, C-terminal YPN_1344 IPR016032 Signal transduction response regulator, C-terminal effector YPN_1344 IPR001789 Signal transduction response regulator, receiver domain YPN_1345 IPR004496 Ferredoxin-type protein NapF YPN_1345 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPN_1345 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPN_1346 IPR005623 Chaperone NapD, nitrate reductase assembly YPN_1347 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YPN_1347 IPR006311 Twin-arginine translocation pathway, signal sequence YPN_1347 IPR009010 Aspartate decarboxylase-like domain superfamily YPN_1347 IPR010051 Periplasmic nitrate reductase, large subunit YPN_1347 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPN_1347 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPN_1347 IPR006656 Molybdopterin oxidoreductase YPN_1347 IPR006657 Molybdopterin dinucleotide-binding domain YPN_1347 IPR041957 Nitrate reductase NapA-like, molybdopterin-binding domain YPN_1348 IPR011031 Multihaem cytochrome YPN_1348 IPR005591 Nitrate reductase cytochrome c-type subunit NapB YPN_1348 IPR036280 Multiheme cytochrome superfamily YPN_1349 IPR036280 Multiheme cytochrome superfamily YPN_1349 IPR024717 Denitrification system component NapC/NirT/NrfH YPN_1349 IPR005126 NapC/NirT cytochrome c, N-terminal YPN_1349 IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT YPN_1349 IPR011031 Multihaem cytochrome YPN_1349 IPR038266 NapC/NirT cytochrome c superfamily YPN_1350 IPR004385 Nucleoside diphosphate pyrophosphatase YPN_1350 IPR000086 NUDIX hydrolase domain YPN_1350 IPR015797 NUDIX hydrolase-like domain superfamily YPN_1351 IPR015884 Malic enzyme, conserved site YPN_1351 IPR012301 Malic enzyme, N-terminal domain YPN_1351 IPR037062 Malic enzyme, N-terminal domain superfamily YPN_1351 IPR012302 Malic enzyme, NAD-binding YPN_1351 IPR012188 NAD(P)-dependent malic enzyme YPN_1351 IPR036291 NAD(P)-binding domain superfamily YPN_1351 IPR042113 Phosphate acetyltransferase, domain 1 YPN_1351 IPR042112 Phosphate acetyltransferase, domain 2 YPN_1351 IPR002505 Phosphate acetyl/butaryl transferase YPN_1352 IPR003791 Protein of unknown function UPF0178 YPN_1353 IPR018375 Coproporphyrinogen III oxidase, conserved site YPN_1353 IPR001260 Coproporphyrinogen III oxidase, aerobic YPN_1353 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily YPN_1354 IPR016181 Acyl-CoA N-acyltransferase YPN_1354 IPR023072 Acetyltransferase, YpeA YPN_1354 IPR000182 GNAT domain YPN_1357 IPR024973 ESPR domain YPN_1357 IPR004899 Pertactin, central region YPN_1357 IPR036709 Autotransporter beta-domain superfamily YPN_1357 IPR005546 Autotransporter beta-domain YPN_1357 IPR030930 Adhesin of bacterial autotransporter system YPN_1357 IPR011050 Pectin lyase fold/virulence factor YPN_1357 IPR003991 Pertactin virulence factor family YPN_1357 IPR006315 Outer membrane autotransporter barrel YPN_1357 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPN_1358 IPR016052 Bacteriophage 933W, L0136 YPN_1358 IPR005220 Bacterial OB-fold YPN_1358 IPR036700 Bacterial OB-fold superfamily YPN_1359 IPR010938 Protein of unknown function DUF1131 YPN_1359 IPR038714 YfeY-like superfamily YPN_1360 IPR011008 Dimeric alpha-beta barrel YPN_1360 IPR006314 Dyp-type peroxidase YPN_1361 IPR020625 Schiff base-forming aldolase, active site YPN_1361 IPR005264 N-acetylneuraminate lyase YPN_1361 IPR013785 Aldolase-type TIM barrel YPN_1361 IPR002220 DapA-like YPN_1362 IPR011060 Ribulose-phosphate binding barrel YPN_1362 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase YPN_1362 IPR013785 Aldolase-type TIM barrel YPN_1363 IPR032675 Leucine-rich repeat domain superfamily YPN_1363 IPR032674 LRR-containing bacterial E3 ligase, N-terminal YPN_1363 IPR001611 Leucine-rich repeat YPN_1364 IPR000600 ROK family YPN_1364 IPR023945 N-acetylmannosamine kinase, bacterial YPN_1365 IPR004375 YhcH/YjgK/YiaL family YPN_1365 IPR037012 YhcH/YjgK/YiaL superfamily YPN_1366 IPR035472 RpiR-like, SIS domain YPN_1366 IPR001347 Sugar isomerase (SIS) YPN_1366 IPR009057 Homeobox-like domain superfamily YPN_1366 IPR000281 Helix-turn-helix protein RpiR YPN_1366 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1367 IPR004742 Sialic acid transporter YPN_1367 IPR036259 MFS transporter superfamily YPN_1367 IPR011701 Major facilitator superfamily YPN_1367 IPR020846 Major facilitator superfamily domain YPN_1368 IPR000957 Sulphate/thiosulphate-binding, conserved site YPN_1368 IPR005669 Thiosulphate/Sulfate-binding protein YPN_1368 IPR034408 Sulphate/thiosulphate-binding site YPN_1369 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_1369 IPR005667 Sulphate ABC transporter permease protein 2 YPN_1369 IPR011865 Sulphate ABC transporter, permease protein CysT YPN_1369 IPR035906 MetI-like superfamily YPN_1370 IPR011866 Sulphate ABC transporter, permease protein CysW YPN_1370 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_1370 IPR035906 MetI-like superfamily YPN_1370 IPR005667 Sulphate ABC transporter permease protein 2 YPN_1371 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1371 IPR008995 Molybdate/tungstate binding, C-terminal YPN_1371 IPR017871 ABC transporter, conserved site YPN_1371 IPR005666 Sulphate transport system permease protein 1 YPN_1371 IPR003439 ABC transporter-like YPN_1371 IPR003593 AAA+ ATPase domain YPN_1371 IPR014769 ABC transporter, sulphate/thiosulphate import, ATP-binding protein CysA, C-terminal YPN_1372 IPR005856 Cysteine synthase YPN_1372 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPN_1372 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site YPN_1372 IPR001926 Pyridoxal-phosphate dependent enzyme YPN_1372 IPR005858 Cysteine synthase CysM YPN_1374 IPR039420 Transcriptional regulatory protein WalR-like YPN_1374 IPR001789 Signal transduction response regulator, receiver domain YPN_1374 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1374 IPR011006 CheY-like superfamily YPN_1374 IPR016032 Signal transduction response regulator, C-terminal effector YPN_1374 IPR001867 OmpR/PhoB-type DNA-binding domain YPN_1375 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPN_1375 IPR005467 Histidine kinase domain YPN_1375 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_1375 IPR003594 Histidine kinase/HSP90-like ATPase YPN_1375 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPN_1375 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPN_1375 IPR003660 HAMP domain YPN_1377 IPR027619 Putative C-S lyase YPN_1377 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_1377 IPR004839 Aminotransferase, class I/classII YPN_1377 IPR015424 Pyridoxal phosphate-dependent transferase YPN_1377 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_1379 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPN_1379 IPR036005 Creatinase/aminopeptidase-like YPN_1379 IPR000994 Peptidase M24 YPN_1379 IPR007865 Aminopeptidase P, N-terminal YPN_1379 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site YPN_1380 IPR001734 Sodium/solute symporter YPN_1380 IPR038377 Sodium/glucose symporter superfamily YPN_1381 IPR023536 Coenzyme A disulphide reductase, staphyolococci YPN_1381 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily YPN_1381 IPR023753 FAD/NAD(P)-binding domain YPN_1381 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_1381 IPR017758 Coenzyme A disulphide reductase YPN_1381 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPN_1382 IPR017871 ABC transporter, conserved site YPN_1382 IPR003439 ABC transporter-like YPN_1382 IPR003838 ABC transporter permease protein domain YPN_1382 IPR003593 AAA+ ATPase domain YPN_1382 IPR025857 MacB-like periplasmic core domain YPN_1382 IPR017911 ABC transporter, macrolide export, ATP-binding domain YPN_1382 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1383 IPR030190 Macrolide export protein MacA YPN_1383 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPN_1383 IPR006143 RND efflux pump, membrane fusion protein YPN_1384 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1384 IPR039420 Transcriptional regulatory protein WalR-like YPN_1384 IPR001867 OmpR/PhoB-type DNA-binding domain YPN_1384 IPR011006 CheY-like superfamily YPN_1384 IPR001789 Signal transduction response regulator, receiver domain YPN_1385 IPR005467 Histidine kinase domain YPN_1385 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_1385 IPR003660 HAMP domain YPN_1385 IPR038515 CpxA, periplasmic domain superfamily YPN_1385 IPR032404 Two-component sensor protein CpxA, periplasmic domain YPN_1385 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPN_1385 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPN_1385 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPN_1385 IPR003594 Histidine kinase/HSP90-like ATPase YPN_1387 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 YPN_1387 IPR011055 Duplicated hybrid motif YPN_1388 IPR008279 PEP-utilising enzyme, mobile domain YPN_1388 IPR018274 PEP-utilising enzyme, active site YPN_1388 IPR000121 PEP-utilising enzyme, C-terminal YPN_1388 IPR023151 PEP-utilising enzyme, conserved site YPN_1388 IPR024692 Phosphotransferase system, enzyme I YPN_1388 IPR006318 Phosphotransferase system, enzyme I-like YPN_1388 IPR008731 Phosphotransferase system, enzyme I N-terminal YPN_1388 IPR036618 PtsI, HPr-binding domain superfamily YPN_1388 IPR040442 Pyruvate kinase-like domain superfamily YPN_1388 IPR036637 Phosphohistidine domain superfamily YPN_1388 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPN_1389 IPR000032 Phosphocarrier protein HPr-like YPN_1389 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YPN_1389 IPR035895 HPr-like superfamily YPN_1389 IPR002114 Phosphotransferase system, HPr serine phosphorylation site YPN_1390 IPR005859 Cysteine synthase CysK YPN_1390 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site YPN_1390 IPR001926 Pyridoxal-phosphate dependent enzyme YPN_1390 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPN_1390 IPR005856 Cysteine synthase YPN_1391 IPR022985 Sulfate transporter CysZ YPN_1392 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily YPN_1392 IPR007449 ZipA, C-terminal FtsZ-binding domain YPN_1392 IPR011919 Cell division protein ZipA YPN_1393 IPR033136 NAD-dependent DNA ligase, conserved site YPN_1393 IPR013839 NAD-dependent DNA ligase, adenylation YPN_1393 IPR013840 NAD-dependent DNA ligase, N-terminal YPN_1393 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 YPN_1393 IPR012340 Nucleic acid-binding, OB-fold YPN_1393 IPR041663 DisA/LigA, helix-hairpin-helix motif YPN_1393 IPR004150 NAD-dependent DNA ligase, OB-fold YPN_1393 IPR036420 BRCT domain superfamily YPN_1393 IPR001357 BRCT domain YPN_1393 IPR010994 RuvA domain 2-like YPN_1393 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type YPN_1393 IPR018239 NAD-dependent DNA ligase, active site YPN_1393 IPR001679 NAD-dependent DNA ligase YPN_1394 IPR024530 Putative quorum-sensing-regulated virulence factor YPN_1397 IPR036515 Transposase IS200-like superfamily YPN_1397 IPR002686 Transposase IS200-like YPN_1398 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding YPN_1398 IPR000924 Glutamyl/glutaminyl-tRNA synthetase YPN_1398 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain YPN_1398 IPR033910 Glutamyl-tRNA synthetase YPN_1398 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_1398 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial YPN_1398 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPN_1398 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 YPN_1399 IPR002668 Concentrative nucleoside transporter N-terminal domain YPN_1399 IPR011657 Concentrative nucleoside transporter C-terminal domain YPN_1399 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial YPN_1399 IPR008276 Concentrative nucleoside transporter YPN_1399 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain YPN_1400 IPR001046 NRAMP family YPN_1402 IPR036812 NADP-dependent oxidoreductase domain superfamily YPN_1402 IPR023210 NADP-dependent oxidoreductase domain YPN_1403 IPR005119 LysR, substrate-binding YPN_1403 IPR036390 Winged helix DNA-binding domain superfamily YPN_1403 IPR000847 Transcription regulator HTH, LysR YPN_1403 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1405 IPR003836 Glucokinase YPN_1406 IPR027443 Isopenicillin N synthase-like YPN_1406 IPR010856 Protein of unknown function DUF1479 YPN_1407 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_1407 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_1407 IPR015424 Pyridoxal phosphate-dependent transferase YPN_1407 IPR004839 Aminotransferase, class I/classII YPN_1408 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase YPN_1408 IPR016174 Di-haem cytochrome, transmembrane YPN_1410 IPR005534 Curli production assembly/transport component CsgG YPN_1412 IPR008517 Protein of unknown function DUF799 YPN_1414 IPR026269 Tat proofreading chaperone DmsD-type YPN_1414 IPR036411 TorD-like superfamily YPN_1414 IPR028611 Tat proofreading chaperone DmsD YPN_1414 IPR020945 DMSO/Nitrate reductase chaperone YPN_1415 IPR007059 DMSO reductase anchor subunit (DmsC) YPN_1416 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPN_1416 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPN_1416 IPR014297 Dimethylsulphoxide reductase, chain B YPN_1417 IPR006657 Molybdopterin dinucleotide-binding domain YPN_1417 IPR009010 Aspartate decarboxylase-like domain superfamily YPN_1417 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE YPN_1417 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPN_1417 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPN_1417 IPR006656 Molybdopterin oxidoreductase YPN_1417 IPR006311 Twin-arginine translocation pathway, signal sequence YPN_1419 IPR008514 Type VI secretion system effector, Hcp YPN_1419 IPR036624 Hcp1-like superfamily YPN_1421 IPR030287 Fe(3+) ions import ATP-binding protein FbpC YPN_1421 IPR017871 ABC transporter, conserved site YPN_1421 IPR015853 ABC transporter, ferric cation import, FbpC YPN_1421 IPR008995 Molybdate/tungstate binding, C-terminal YPN_1421 IPR003439 ABC transporter-like YPN_1421 IPR003593 AAA+ ATPase domain YPN_1421 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1422 IPR035906 MetI-like superfamily YPN_1422 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_1423 IPR006061 Solute-binding family 1, conserved site YPN_1423 IPR026045 Ferric binding protein YPN_1424 IPR011757 Lytic transglycosylase MltB YPN_1424 IPR023346 Lysozyme-like domain superfamily YPN_1424 IPR031304 Transglycosylase SLT domain 2 YPN_1434 IPR003593 AAA+ ATPase domain YPN_1434 IPR003959 ATPase, AAA-type, core YPN_1434 IPR017729 Type VI secretion system, ATPase ClpV1 YPN_1434 IPR041546 ClpA/ClpB, AAA lid domain YPN_1434 IPR028299 ClpA/B, conserved site 2 YPN_1434 IPR018368 ClpA/B, conserved site 1 YPN_1434 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1434 IPR001270 ClpA/B family YPN_1434 IPR019489 Clp ATPase, C-terminal YPN_1434 IPR004176 Clp, N-terminal YPN_1434 IPR036628 Clp, N-terminal domain superfamily YPN_1435 IPR036937 Fimbrial-type adhesion domain superfamily YPN_1435 IPR008966 Adhesion domain superfamily YPN_1435 IPR039458 FimA-like YPN_1436 IPR001829 Pili assembly chaperone, bacterial YPN_1436 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPN_1436 IPR018046 Pili assembly chaperone, conserved site YPN_1436 IPR016147 Pili assembly chaperone, N-terminal YPN_1436 IPR013783 Immunoglobulin-like fold YPN_1436 IPR016148 Pili assembly chaperone, C-terminal YPN_1436 IPR008962 PapD-like superfamily YPN_1437 IPR025885 PapC, N-terminal domain YPN_1437 IPR018030 Fimbrial membrane usher, conserved site YPN_1437 IPR037224 PapC, N-terminal domain superfamily YPN_1437 IPR000015 Outer membrane usher protein YPN_1437 IPR042186 Outer membrane usher protein FimD, plug domain YPN_1437 IPR025949 PapC-like, C-terminal domain YPN_1438 IPR001207 Transposase, mutator type YPN_1439 IPR001207 Transposase, mutator type YPN_1440 IPR000015 Outer membrane usher protein YPN_1440 IPR042186 Outer membrane usher protein FimD, plug domain YPN_1440 IPR025949 PapC-like, C-terminal domain YPN_1440 IPR018030 Fimbrial membrane usher, conserved site YPN_1440 IPR037224 PapC, N-terminal domain superfamily YPN_1440 IPR025885 PapC, N-terminal domain YPN_1448 IPR012337 Ribonuclease H-like superfamily YPN_1448 IPR006120 Resolvase, HTH domain YPN_1448 IPR017894 HTH domain, IS21 transposase-type YPN_1448 IPR036397 Ribonuclease H superfamily YPN_1448 IPR001584 Integrase, catalytic core YPN_1449 IPR001270 ClpA/B family YPN_1449 IPR003593 AAA+ ATPase domain YPN_1449 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_1449 IPR002611 IstB-like ATP-binding protein YPN_1449 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1450 IPR023614 Porin domain superfamily YPN_1450 IPR033900 Porin domain, Gram-negative type YPN_1450 IPR001702 Porin, Gram-negative type YPN_1450 IPR001897 Porin, gammaproteobacterial YPN_1452 IPR005920 Imidazolonepropionase YPN_1452 IPR006680 Amidohydrolase-related YPN_1452 IPR032466 Metal-dependent hydrolase YPN_1452 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPN_1453 IPR011663 UbiC transcription regulator-associated YPN_1453 IPR036390 Winged helix DNA-binding domain superfamily YPN_1453 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1453 IPR000524 Transcription regulator HTH, GntR YPN_1453 IPR010248 Histidine utilization repressor YPN_1453 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YPN_1454 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPN_1454 IPR006680 Amidohydrolase-related YPN_1454 IPR032466 Metal-dependent hydrolase YPN_1454 IPR023512 Deaminase MtaD/DadD YPN_1455 IPR011051 RmlC-like cupin domain superfamily YPN_1455 IPR023482 Uncharacterised protein family Ves YPN_1455 IPR014710 RmlC-like jelly roll fold YPN_1455 IPR010282 Uncharacterised protein family HutD/Ves YPN_1457 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal YPN_1457 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPN_1457 IPR016039 Thiolase-like YPN_1457 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 YPN_1458 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPN_1458 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal YPN_1458 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 YPN_1458 IPR016039 Thiolase-like YPN_1459 IPR001509 NAD-dependent epimerase/dehydratase YPN_1459 IPR036291 NAD(P)-binding domain superfamily YPN_1468 IPR001207 Transposase, mutator type YPN_1472 IPR013217 Methyltransferase type 12 YPN_1472 IPR016584 Methyltransferase VrtF-like YPN_1472 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_1473 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPN_1473 IPR002347 Short-chain dehydrogenase/reductase SDR YPN_1473 IPR036291 NAD(P)-binding domain superfamily YPN_1480 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_1480 IPR003594 Histidine kinase/HSP90-like ATPase YPN_1480 IPR005467 Histidine kinase domain YPN_1480 IPR006290 Heavy metal sensor kinase YPN_1480 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPN_1480 IPR003660 HAMP domain YPN_1480 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPN_1480 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPN_1481 IPR001867 OmpR/PhoB-type DNA-binding domain YPN_1481 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1481 IPR039420 Transcriptional regulatory protein WalR-like YPN_1481 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response YPN_1481 IPR011006 CheY-like superfamily YPN_1481 IPR001789 Signal transduction response regulator, receiver domain YPN_1482 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain YPN_1482 IPR029058 Alpha/Beta hydrolase fold YPN_1491 IPR006073 GTP binding domain YPN_1491 IPR031167 OBG-type guanine nucleotide-binding (G) domain YPN_1491 IPR012675 Beta-grasp domain superfamily YPN_1491 IPR012676 TGS-like YPN_1491 IPR023192 TGS-like domain superfamily YPN_1491 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 YPN_1491 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1491 IPR041706 YchF, N-terminal YPN_1491 IPR013029 YchF, C-terminal domain YPN_1491 IPR004095 TGS YPN_1492 IPR036416 Peptidyl-tRNA hydrolase superfamily YPN_1492 IPR018171 Peptidyl-tRNA hydrolase, conserved site YPN_1492 IPR001328 Peptidyl-tRNA hydrolase YPN_1493 IPR019698 Protein of unknown function DUF2583 YPN_1494 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain YPN_1494 IPR000836 Phosphoribosyltransferase domain YPN_1494 IPR029057 Phosphoribosyltransferase-like YPN_1494 IPR005946 Ribose-phosphate pyrophosphokinase YPN_1494 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type YPN_1494 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site YPN_1496 IPR036554 GHMP kinase, C-terminal domain superfamily YPN_1496 IPR006204 GHMP kinase N-terminal domain YPN_1496 IPR013750 GHMP kinase, C-terminal domain YPN_1496 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YPN_1496 IPR020568 Ribosomal protein S5 domain 2-type fold YPN_1496 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPN_1497 IPR004565 Outer membrane lipoprotein LolB YPN_1497 IPR029046 Lipoprotein localisation LolA/LolB/LppX YPN_1498 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase YPN_1498 IPR036291 NAD(P)-binding domain superfamily YPN_1498 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YPN_1498 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal YPN_1498 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily YPN_1498 IPR018214 Glutamyl-tRNA reductase, conserved site YPN_1498 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain YPN_1498 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily YPN_1499 IPR004373 Peptide chain release factor 1 YPN_1499 IPR000352 Peptide chain release factor class I YPN_1499 IPR005139 Peptide chain release factor YPN_1500 IPR040758 Release factor glutamine methyltransferase, N-terminal domain YPN_1500 IPR025714 Methyltransferase domain YPN_1500 IPR004556 Methyltransferase HemK-like YPN_1500 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPN_1500 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific YPN_1500 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_1501 IPR007360 Invasion gene expression up-regulator, SirB YPN_1502 IPR032698 Protein SirB1, N-terminal YPN_1503 IPR013785 Aldolase-type TIM barrel YPN_1503 IPR006269 3-deoxy-8-phosphooctulonate synthase YPN_1503 IPR006218 DAHP synthetase I/KDSA YPN_1504 IPR011547 SLC26A/SulP transporter domain YPN_1504 IPR001902 SLC26A/SulP transporter YPN_1504 IPR002645 STAS domain YPN_1504 IPR036513 STAS domain superfamily YPN_1504 IPR018045 Sulphate anion transporter, conserved site YPN_1505 IPR030395 Glycerophosphodiester phosphodiesterase domain YPN_1505 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily YPN_1507 IPR035906 MetI-like superfamily YPN_1507 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_1508 IPR035906 MetI-like superfamily YPN_1508 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_1509 IPR003593 AAA+ ATPase domain YPN_1509 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA YPN_1509 IPR003439 ABC transporter-like YPN_1509 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit YPN_1509 IPR013611 Transport-associated OB, type 2 YPN_1509 IPR017871 ABC transporter, conserved site YPN_1509 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1509 IPR008995 Molybdate/tungstate binding, C-terminal YPN_1511 IPR013611 Transport-associated OB, type 2 YPN_1511 IPR003439 ABC transporter-like YPN_1511 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA YPN_1511 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1511 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit YPN_1511 IPR003593 AAA+ ATPase domain YPN_1511 IPR017871 ABC transporter, conserved site YPN_1511 IPR008995 Molybdate/tungstate binding, C-terminal YPN_1512 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily YPN_1512 IPR030395 Glycerophosphodiester phosphodiesterase domain YPN_1513 IPR000600 ROK family YPN_1513 IPR036390 Winged helix DNA-binding domain superfamily YPN_1513 IPR022687 DTXR-type HTH domain YPN_1513 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1514 IPR023710 Probable phosphatase YcdX YPN_1514 IPR003141 Polymerase/histidinol phosphatase, N-terminal YPN_1514 IPR016195 Polymerase/histidinol phosphatase-like YPN_1514 IPR004013 PHP domain YPN_1515 IPR026269 Tat proofreading chaperone DmsD-type YPN_1515 IPR036411 TorD-like superfamily YPN_1515 IPR020945 DMSO/Nitrate reductase chaperone YPN_1516 IPR010835 Protein of unknown function DUF1439 YPN_1517 IPR011701 Major facilitator superfamily YPN_1517 IPR020846 Major facilitator superfamily domain YPN_1517 IPR036259 MFS transporter superfamily YPN_1517 IPR022855 Multidrug resistance protein MdtH YPN_1518 IPR000182 GNAT domain YPN_1518 IPR016181 Acyl-CoA N-acyltransferase YPN_1519 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1519 IPR007432 Protein of unknown function DUF480 YPN_1519 IPR036390 Winged helix DNA-binding domain superfamily YPN_1520 IPR004268 Peptidoglycan biosynthesis protein MurJ YPN_1521 IPR013686 Polypeptide-transport-associated, ShlB-type YPN_1521 IPR035251 ShlB, POTRA domain YPN_1521 IPR034746 POTRA domain YPN_1521 IPR027282 Two partner secretion pathway transporter YPN_1521 IPR005565 Haemolysin activator HlyB, C-terminal YPN_1522 IPR012334 Pectin lyase fold YPN_1522 IPR025157 Hemagglutinin repeat YPN_1522 IPR008638 Filamentous haemagglutinin, N-terminal YPN_1522 IPR011050 Pectin lyase fold/virulence factor YPN_1523 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YPN_1523 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_1523 IPR008909 DALR anticodon binding YPN_1523 IPR035684 Arginyl-tRNA synthetase, catalytic core domain YPN_1523 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily YPN_1523 IPR005148 Arginyl tRNA synthetase N-terminal domain YPN_1523 IPR001278 Arginine-tRNA ligase YPN_1523 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPN_1524 IPR010393 Protein of unknown function DUF991 YPN_1524 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YPN_1525 IPR036822 Copper homeostasis (CutC) domain superfamily YPN_1525 IPR023648 Copper homeostasis CutC domain YPN_1525 IPR005627 Copper homeostasis protein CutC YPN_1526 IPR010017 tRNA U34 carboxymethyltransferase YPN_1526 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_1526 IPR027555 tRNA (mo5U34)-methyltransferase-like YPN_1527 IPR005271 Carboxy-S-adenosyl-L-methionine synthase YPN_1527 IPR041698 Methyltransferase domain 25 YPN_1527 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_1528 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily YPN_1528 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein YPN_1529 IPR036520 UPF0759 superfamily YPN_1529 IPR002763 Protein of unknown function DUF72 YPN_1530 IPR004115 GAD-like domain superfamily YPN_1530 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YPN_1530 IPR012340 Nucleic acid-binding, OB-fold YPN_1530 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YPN_1530 IPR006195 Aminoacyl-tRNA synthetase, class II YPN_1530 IPR004524 Aspartate-tRNA ligase, type 1 YPN_1530 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb YPN_1530 IPR029351 GAD domain YPN_1531 IPR015797 NUDIX hydrolase-like domain superfamily YPN_1531 IPR020084 NUDIX hydrolase, conserved site YPN_1531 IPR003564 Dihydroneopterin triphosphate diphosphatase YPN_1531 IPR000086 NUDIX hydrolase domain YPN_1532 IPR029072 YebC-like YPN_1532 IPR026564 Transcriptional regulator TACO1-like, domain 3 YPN_1532 IPR002876 Transcriptional regulator TACO1-like YPN_1532 IPR017856 Integrase-like, N-terminal YPN_1533 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site YPN_1533 IPR036397 Ribonuclease H superfamily YPN_1533 IPR012337 Ribonuclease H-like superfamily YPN_1533 IPR002176 Crossover junction endodeoxyribonuclease RuvC YPN_1534 IPR000085 Bacterial DNA recombination protein RuvA YPN_1534 IPR036267 RuvA, C-terminal domain superfamily YPN_1534 IPR011114 Holliday junction DNA helicase RuvA, C-terminal YPN_1534 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 YPN_1534 IPR012340 Nucleic acid-binding, OB-fold YPN_1534 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial YPN_1534 IPR010994 RuvA domain 2-like YPN_1535 IPR008823 RuvB C-terminal winged helix domain YPN_1535 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1535 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1535 IPR004605 DNA helicase, Holliday junction RuvB-type YPN_1535 IPR041445 RuvB, AAA lid domain YPN_1535 IPR003593 AAA+ ATPase domain YPN_1535 IPR008824 RuvB-like P-loop domain YPN_1535 IPR036390 Winged helix DNA-binding domain superfamily YPN_1536 IPR037294 ABC transporter, BtuC-like YPN_1536 IPR001626 ABC transporter, TroCD-like YPN_1537 IPR017882 Zinc import ATP-binding protein ZnuC YPN_1537 IPR003439 ABC transporter-like YPN_1537 IPR003593 AAA+ ATPase domain YPN_1537 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1538 IPR035520 High-affinity zinc uptake system protein ZnuA YPN_1538 IPR006127 Periplasmic solute binding protein, ZnuA-like YPN_1539 IPR013731 Opacity-associated protein A, N-terminal YPN_1539 IPR011055 Duplicated hybrid motif YPN_1539 IPR018392 LysM domain YPN_1539 IPR016047 Peptidase M23 YPN_1540 IPR004960 Bacterial lipid A biosynthesis acyltransferase YPN_1540 IPR011921 Lipid A biosynthesis myristoyltransferase YPN_1541 IPR015795 Pyruvate kinase, C-terminal YPN_1541 IPR040442 Pyruvate kinase-like domain superfamily YPN_1541 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPN_1541 IPR011037 Pyruvate kinase-like, insert domain superfamily YPN_1541 IPR018209 Pyruvate kinase, active site YPN_1541 IPR036918 Pyruvate kinase, C-terminal domain superfamily YPN_1541 IPR001697 Pyruvate kinase YPN_1541 IPR015806 Pyruvate kinase, insert domain superfamily YPN_1541 IPR015793 Pyruvate kinase, barrel YPN_1542 IPR035472 RpiR-like, SIS domain YPN_1542 IPR009057 Homeobox-like domain superfamily YPN_1542 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1542 IPR000281 Helix-turn-helix protein RpiR YPN_1542 IPR001347 Sugar isomerase (SIS) YPN_1543 IPR001282 Glucose-6-phosphate dehydrogenase YPN_1543 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding YPN_1543 IPR036291 NAD(P)-binding domain superfamily YPN_1543 IPR019796 Glucose-6-phosphate dehydrogenase, active site YPN_1543 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal YPN_1544 IPR013785 Aldolase-type TIM barrel YPN_1544 IPR031337 KDPG/KHG aldolase, active site 1 YPN_1544 IPR031338 KDPG/KHG aldolase, active site 2 YPN_1544 IPR000887 KDPG/KHG aldolase YPN_1545 IPR000390 Small multidrug resistance protein family YPN_1545 IPR023740 Spermidine export protein MdtJ YPN_1546 IPR023737 Spermidine export protein MdtI YPN_1546 IPR000390 Small multidrug resistance protein family YPN_1547 IPR006175 YjgF/YER057c/UK114 family YPN_1547 IPR035959 RutC-like superfamily YPN_1547 IPR035709 RutC family, YoaB-like YPN_1547 IPR019897 RidA, conserved site YPN_1548 IPR006935 Helicase/UvrB, N-terminal YPN_1548 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPN_1548 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1548 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type YPN_1548 IPR006555 ATP-dependent helicase, C-terminal YPN_1549 IPR000905 Gcp-like domain YPN_1549 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB YPN_1550 IPR004658 Outer membrane lipoprotein Slp YPN_1551 IPR025110 AMP-binding enzyme, C-terminal domain YPN_1551 IPR000873 AMP-dependent synthetase/ligase YPN_1551 IPR042099 AMP-dependent synthetase-like superfamily YPN_1551 IPR020845 AMP-binding, conserved site YPN_1552 IPR036397 Ribonuclease H superfamily YPN_1552 IPR006292 Ribonuclease D YPN_1552 IPR002562 3'-5' exonuclease domain YPN_1552 IPR010997 HRDC-like superfamily YPN_1552 IPR012337 Ribonuclease H-like superfamily YPN_1552 IPR002121 HRDC domain YPN_1553 IPR005527 Cell division topological specificity factor MinE YPN_1553 IPR036707 Cell division topological specificity factor MinE superfamily YPN_1554 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1554 IPR010223 ATP binding protein MinD, bacterial-type YPN_1554 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain YPN_1554 IPR025501 ATP binding protein MinD YPN_1555 IPR007874 Septum formation inhibitor MinC, N-terminal YPN_1555 IPR013033 Septum formation inhibitor MinC YPN_1555 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal YPN_1555 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily YPN_1555 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily YPN_1555 IPR005526 Septum formation inhibitor MinC, C-terminal YPN_1556 IPR038068 YcgL-like superfamily YPN_1556 IPR027354 YcgL domain YPN_1557 IPR011757 Lytic transglycosylase MltB YPN_1557 IPR023346 Lysozyme-like domain superfamily YPN_1557 IPR031304 Transglycosylase SLT domain 2 YPN_1558 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily YPN_1558 IPR011234 Fumarylacetoacetase-like, C-terminal YPN_1559 IPR008228 Uncharacterised conserved protein UCP006173 YPN_1559 IPR005358 Putative zinc- or iron-chelating domain containing protein YPN_1560 IPR013762 Integrase-like, catalytic domain superfamily YPN_1560 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPN_1560 IPR022000 Min27-like integrase, DNA-binding domain YPN_1560 IPR002104 Integrase, catalytic domain YPN_1560 IPR010998 Integrase/recombinase, N-terminal YPN_1561 IPR006120 Resolvase, HTH domain YPN_1561 IPR036397 Ribonuclease H superfamily YPN_1561 IPR012337 Ribonuclease H-like superfamily YPN_1561 IPR001584 Integrase, catalytic core YPN_1561 IPR017894 HTH domain, IS21 transposase-type YPN_1562 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1562 IPR003593 AAA+ ATPase domain YPN_1562 IPR001270 ClpA/B family YPN_1562 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_1562 IPR002611 IstB-like ATP-binding protein YPN_1564 IPR008711 Recombinase NinB YPN_1564 IPR036619 NinB superfamily YPN_1566 IPR010534 Bacteriophage 933W, GpQ YPN_1576 IPR001207 Transposase, mutator type YPN_1592 IPR002686 Transposase IS200-like YPN_1592 IPR036515 Transposase IS200-like superfamily YPN_1603 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly YPN_1605 IPR001207 Transposase, mutator type YPN_1607 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_1607 IPR010240 Cysteine desulfurase IscS YPN_1607 IPR016454 Cysteine desulfurase YPN_1607 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_1607 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPN_1607 IPR000192 Aminotransferase class V domain YPN_1607 IPR015424 Pyridoxal phosphate-dependent transferase YPN_1610 IPR022920 Disulphide bond formation protein DsbB YPN_1610 IPR023380 DsbB-like superfamily YPN_1610 IPR003752 Disulphide bond formation protein DsbB/BdbC YPN_1611 IPR004671 Na+/H+ antiporter NhaB YPN_1612 IPR000524 Transcription regulator HTH, GntR YPN_1612 IPR028374 FadR, C-terminal domain YPN_1612 IPR008920 Transcription regulator FadR/GntR, C-terminal YPN_1612 IPR014178 Fatty acid response transcription factor FadR YPN_1612 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1612 IPR036390 Winged helix DNA-binding domain superfamily YPN_1613 IPR007390 Sporulation stage V, protein R YPN_1614 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_1614 IPR006076 FAD dependent oxidoreductase YPN_1614 IPR023080 D-amino acid dehydrogenase DadA YPN_1615 IPR023697 Multidrug resistance protein MdtL YPN_1615 IPR036259 MFS transporter superfamily YPN_1615 IPR020846 Major facilitator superfamily domain YPN_1615 IPR011701 Major facilitator superfamily YPN_1616 IPR012093 Pirin YPN_1616 IPR008778 Pirin, C-terminal domain YPN_1616 IPR003829 Pirin, N-terminal domain YPN_1616 IPR014710 RmlC-like jelly roll fold YPN_1616 IPR011051 RmlC-like cupin domain superfamily YPN_1617 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1617 IPR005119 LysR, substrate-binding YPN_1617 IPR000847 Transcription regulator HTH, LysR YPN_1617 IPR036390 Winged helix DNA-binding domain superfamily YPN_1619 IPR006698 Uncharacterised protein family UPF0229 YPN_1620 IPR016230 Serine-protein kinase, PrkA YPN_1620 IPR010650 PrkA C-terminal domain YPN_1620 IPR013153 PrkA AAA domain YPN_1620 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1621 IPR010583 MltA-interacting MipA YPN_1622 IPR014718 Glycoside hydrolase-type carbohydrate-binding YPN_1622 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase YPN_1622 IPR025532 Glucose-6-phosphate 1-epimerase YPN_1622 IPR011013 Galactose mutarotase-like domain superfamily YPN_1623 IPR036291 NAD(P)-binding domain superfamily YPN_1623 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family YPN_1623 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YPN_1623 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I YPN_1623 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain YPN_1623 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site YPN_1624 IPR002579 Peptide methionine sulphoxide reductase MrsB YPN_1624 IPR028427 Peptide methionine sulfoxide reductase YPN_1624 IPR011057 Mss4-like superfamily YPN_1625 IPR009749 Protein of unknown function DUF1315 YPN_1626 IPR000868 Isochorismatase-like YPN_1626 IPR036380 Isochorismatase-like superfamily YPN_1627 IPR006033 Type I L-asparaginase family YPN_1627 IPR027474 L-asparaginase, N-terminal YPN_1627 IPR041725 Type I (cytosolic) L-asparaginase YPN_1627 IPR027473 L-asparaginase, C-terminal YPN_1627 IPR027475 Asparaginase/glutaminase, active site 2 YPN_1627 IPR020827 Asparaginase/glutaminase, active site 1 YPN_1627 IPR006034 Asparaginase/glutaminase-like YPN_1627 IPR036152 Asparaginase/glutaminase-like superfamily YPN_1627 IPR040919 Asparaginase/glutaminase, C-terminal YPN_1627 IPR037152 L-asparaginase, N-terminal domain superfamily YPN_1628 IPR033854 Signal peptide peptidase A YPN_1628 IPR004635 Peptidase S49, SppA YPN_1628 IPR002142 Peptidase S49 YPN_1628 IPR029045 ClpP/crotonase-like domain superfamily YPN_1628 IPR004634 Peptidase S49, protease IV YPN_1629 IPR026021 Putative NAD(P)H nitroreductase YdjA-like YPN_1629 IPR029479 Nitroreductase YPN_1629 IPR000415 Nitroreductase-like YPN_1630 IPR004536 Selenophosphate synthetase YPN_1630 IPR010918 PurM-like, C-terminal domain YPN_1630 IPR016188 PurM-like, N-terminal domain YPN_1630 IPR036921 PurM-like, N-terminal domain superfamily YPN_1630 IPR023061 Selenophosphate synthetase, class I YPN_1630 IPR036676 PurM-like, C-terminal domain superfamily YPN_1631 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 YPN_1631 IPR013497 DNA topoisomerase, type IA, central YPN_1631 IPR006171 TOPRIM domain YPN_1631 IPR005738 DNA topoisomerase III YPN_1631 IPR003602 DNA topoisomerase, type IA, DNA-binding domain YPN_1631 IPR023405 DNA topoisomerase, type IA, core domain YPN_1631 IPR000380 DNA topoisomerase, type IA YPN_1631 IPR003601 DNA topoisomerase, type IA, domain 2 YPN_1631 IPR023406 DNA topoisomerase, type IA, active site YPN_1631 IPR034144 DNA topoisomerase 3-like, TOPRIM domain YPN_1631 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 YPN_1631 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 YPN_1632 IPR009971 Protein of unknown function DUF1496 YPN_1633 IPR020476 NUDIX hydrolase YPN_1633 IPR015797 NUDIX hydrolase-like domain superfamily YPN_1633 IPR020084 NUDIX hydrolase, conserved site YPN_1633 IPR000086 NUDIX hydrolase domain YPN_1634 IPR020847 AP endonuclease 1, binding site YPN_1634 IPR037493 Exodeoxyribonuclease III-like YPN_1634 IPR005135 Endonuclease/exonuclease/phosphatase YPN_1634 IPR020848 AP endonuclease 1, conserved site YPN_1634 IPR004808 AP endonuclease 1 YPN_1634 IPR036691 Endonuclease/exonuclease/phosphatase superfamily YPN_1635 IPR000847 Transcription regulator HTH, LysR YPN_1635 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1635 IPR005119 LysR, substrate-binding YPN_1635 IPR036390 Winged helix DNA-binding domain superfamily YPN_1637 IPR001207 Transposase, mutator type YPN_1638 IPR002912 ACT domain YPN_1638 IPR041729 Formyltetrahydrofolate deformylase, C-terminal hydrolase domain YPN_1638 IPR002376 Formyl transferase, N-terminal YPN_1638 IPR036477 Formyl transferase, N-terminal domain superfamily YPN_1638 IPR004810 Formyltetrahydrofolate deformylase YPN_1639 IPR023006 Uncharacterised protein family UPF0225 YPN_1639 IPR004027 SEC-C motif YPN_1639 IPR032710 NTF2-like domain superfamily YPN_1640 IPR028616 Regulator of RpoS YPN_1640 IPR001789 Signal transduction response regulator, receiver domain YPN_1640 IPR039420 Transcriptional regulatory protein WalR-like YPN_1640 IPR011006 CheY-like superfamily YPN_1640 IPR036457 PPM-type phosphatase domain superfamily YPN_1641 IPR036291 NAD(P)-binding domain superfamily YPN_1641 IPR017476 UDP-glucose/GDP-mannose dehydrogenase YPN_1641 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal YPN_1641 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal YPN_1641 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily YPN_1641 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type YPN_1641 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPN_1641 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation YPN_1642 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily YPN_1642 IPR001801 Histone-like protein H-NS YPN_1642 IPR027444 Histone-like protein H-NS, C-terminal domain YPN_1642 IPR027454 Histone-like protein H-NS, N-terminal YPN_1643 IPR001267 Thymidine kinase YPN_1643 IPR020633 Thymidine kinase, conserved site YPN_1643 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1644 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_1644 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1644 IPR001270 ClpA/B family YPN_1644 IPR003593 AAA+ ATPase domain YPN_1644 IPR002611 IstB-like ATP-binding protein YPN_1645 IPR036397 Ribonuclease H superfamily YPN_1645 IPR006120 Resolvase, HTH domain YPN_1645 IPR001584 Integrase, catalytic core YPN_1645 IPR017894 HTH domain, IS21 transposase-type YPN_1645 IPR012337 Ribonuclease H-like superfamily YPN_1646 IPR016163 Aldehyde dehydrogenase, C-terminal YPN_1646 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase YPN_1646 IPR015590 Aldehyde dehydrogenase domain YPN_1646 IPR016162 Aldehyde dehydrogenase, N-terminal YPN_1646 IPR039697 Iron-type alcohol dehydrogenase-like YPN_1646 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YPN_1646 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA YPN_1646 IPR016161 Aldehyde/histidinol dehydrogenase YPN_1646 IPR034789 Bifunctional aldehyde-alcohol dehydrogenase, C-terminal domain YPN_1647 IPR002771 Multiple antibiotic resistance (MarC)-related YPN_1648 IPR030678 Peptide/nickel binding protein, MppA-type YPN_1648 IPR039424 Solute-binding protein family 5 YPN_1648 IPR023765 Solute-binding protein family 5, conserved site YPN_1648 IPR000914 Solute-binding protein family 5 domain YPN_1649 IPR035906 MetI-like superfamily YPN_1649 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_1650 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPN_1650 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_1650 IPR035906 MetI-like superfamily YPN_1651 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1651 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPN_1651 IPR017871 ABC transporter, conserved site YPN_1651 IPR003439 ABC transporter-like YPN_1651 IPR003593 AAA+ ATPase domain YPN_1652 IPR003439 ABC transporter-like YPN_1652 IPR017871 ABC transporter, conserved site YPN_1652 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPN_1652 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1652 IPR003593 AAA+ ATPase domain YPN_1654 IPR036763 Putative dsDNA mimic superfamily YPN_1654 IPR007376 dsDNA mimic, putative YPN_1655 IPR025202 Phospholipase D-like domain YPN_1655 IPR030840 Cardiolipin synthase A YPN_1655 IPR027379 Cardiolipin synthase N-terminal YPN_1655 IPR001736 Phospholipase D/Transphosphatidylase YPN_1655 IPR022924 Cardiolipin synthase YPN_1656 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPN_1656 IPR027385 Outer membrane protein beta-barrel domain YPN_1656 IPR000758 Virulence-related outer membrane protein YPN_1660 IPR011008 Dimeric alpha-beta barrel YPN_1660 IPR005545 YCII-related YPN_1661 IPR037682 TonB, C-terminal YPN_1661 IPR003538 Gram-negative bacterial TonB protein YPN_1661 IPR006260 TonB/TolA, C-terminal YPN_1662 IPR001207 Transposase, mutator type YPN_1663 IPR006683 Thioesterase domain YPN_1663 IPR029069 HotDog domain superfamily YPN_1663 IPR033120 Hotdog acyl-CoA thioesterase (ACOT)-type domain YPN_1663 IPR040170 Cytosolic acyl coenzyme A thioester hydrolase YPN_1664 IPR006008 Intracellular septation protein A YPN_1667 IPR009627 Uncharacterised protein family UPF0259 YPN_1669 IPR005618 Outer membrane protein, OmpW YPN_1669 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPN_1672 IPR013785 Aldolase-type TIM barrel YPN_1672 IPR011060 Ribulose-phosphate binding barrel YPN_1672 IPR018204 Tryptophan synthase, alpha chain, active site YPN_1672 IPR002028 Tryptophan synthase, alpha chain YPN_1673 IPR006653 Tryptophan synthase, beta chain, conserved site YPN_1673 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPN_1673 IPR023026 Tryptophan synthase beta chain/beta chain-like YPN_1673 IPR006654 Tryptophan synthase, beta chain YPN_1673 IPR001926 Pyridoxal-phosphate dependent enzyme YPN_1674 IPR011060 Ribulose-phosphate binding barrel YPN_1674 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) YPN_1674 IPR001468 Indole-3-glycerol phosphate synthase, conserved site YPN_1674 IPR013798 Indole-3-glycerol phosphate synthase YPN_1674 IPR013785 Aldolase-type TIM barrel YPN_1675 IPR005940 Anthranilate phosphoribosyl transferase YPN_1675 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily YPN_1675 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily YPN_1675 IPR017459 Glycosyl transferase family 3, N-terminal domain YPN_1675 IPR000312 Glycosyl transferase, family 3 YPN_1676 IPR017926 Glutamine amidotransferase YPN_1676 IPR029062 Class I glutamine amidotransferase-like YPN_1676 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain YPN_1677 IPR015890 Chorismate-utilising enzyme, C-terminal YPN_1677 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial YPN_1677 IPR006805 Anthranilate synthase component I, N-terminal YPN_1677 IPR019999 Anthranilate synthase component I-like YPN_1677 IPR005801 ADC synthase YPN_1678 IPR016195 Polymerase/histidinol phosphatase-like YPN_1678 IPR004013 PHP domain YPN_1678 IPR003141 Polymerase/histidinol phosphatase, N-terminal YPN_1679 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily YPN_1679 IPR006070 YrdC-like domain YPN_1680 IPR002942 RNA-binding S4 domain YPN_1680 IPR036986 RNA-binding S4 domain superfamily YPN_1680 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPN_1680 IPR006145 Pseudouridine synthase, RsuA/RluA YPN_1680 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F YPN_1680 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site YPN_1681 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1681 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR YPN_1682 IPR002347 Short-chain dehydrogenase/reductase SDR YPN_1682 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPN_1682 IPR036291 NAD(P)-binding domain superfamily YPN_1683 IPR029045 ClpP/crotonase-like domain superfamily YPN_1683 IPR002142 Peptidase S49 YPN_1683 IPR013703 Peptidase S49, N-terminal proteobacteria YPN_1684 IPR019633 Protein of unknown function DUF2498 YPN_1684 IPR038191 YciN superfamily YPN_1686 IPR023406 DNA topoisomerase, type IA, active site YPN_1686 IPR013497 DNA topoisomerase, type IA, central YPN_1686 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 YPN_1686 IPR006171 TOPRIM domain YPN_1686 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type YPN_1686 IPR034149 DNA topoisomerase 1, TOPRIM domain YPN_1686 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 YPN_1686 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 YPN_1686 IPR000380 DNA topoisomerase, type IA YPN_1686 IPR023405 DNA topoisomerase, type IA, core domain YPN_1686 IPR013498 DNA topoisomerase, type IA, zn finger YPN_1686 IPR003602 DNA topoisomerase, type IA, DNA-binding domain YPN_1686 IPR028612 DNA topoisomerase I, type IA YPN_1686 IPR005733 DNA topoisomerase I, bacterial-type YPN_1686 IPR003601 DNA topoisomerase, type IA, domain 2 YPN_1687 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1687 IPR036390 Winged helix DNA-binding domain superfamily YPN_1687 IPR000847 Transcription regulator HTH, LysR YPN_1687 IPR005119 LysR, substrate-binding YPN_1689 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain YPN_1689 IPR036008 Aconitase, iron-sulfur domain YPN_1689 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 YPN_1689 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain YPN_1689 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel YPN_1689 IPR006249 Aconitase/Iron-responsive element-binding protein 2 YPN_1689 IPR018136 Aconitase family, 4Fe-4S cluster binding site YPN_1690 IPR036144 RibA-like superfamily YPN_1690 IPR000926 GTP cyclohydrolase II, RibA YPN_1690 IPR032677 GTP cyclohydrolase II YPN_1692 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily YPN_1692 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YPN_1693 IPR010445 Lipopolysaccharide assembly protein A domain YPN_1693 IPR032906 Lipopolysaccharide assembly protein A YPN_1694 IPR011990 Tetratricopeptide-like helical domain superfamily YPN_1694 IPR019734 Tetratricopeptide repeat YPN_1694 IPR013026 Tetratricopeptide repeat-containing domain YPN_1694 IPR041166 LapB, rubredoxin metal binding domain YPN_1694 IPR030865 Lipopolysaccharide assembly protein B YPN_1696 IPR011060 Ribulose-phosphate binding barrel YPN_1696 IPR014732 Orotidine 5'-phosphate decarboxylase YPN_1696 IPR018089 Orotidine 5'-phosphate decarboxylase, active site YPN_1696 IPR001754 Orotidine 5'-phosphate decarboxylase domain YPN_1696 IPR013785 Aldolase-type TIM barrel YPN_1697 IPR036877 SUI1 domain superfamily YPN_1697 IPR001950 SUI1 domain YPN_1697 IPR005872 Archaeal/bacterial translation initiation factor SUI1 YPN_1698 IPR008816 Glycine zipper 2TM domain YPN_1699 IPR033748 L-ribulose-5-phosphate 4-epimerase AraD YPN_1699 IPR004661 L-ribulose-5-phosphate 4-epimerase YPN_1699 IPR001303 Class II aldolase/adducin N-terminal YPN_1699 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPN_1701 IPR001585 Transaldolase/Fructose-6-phosphate aldolase YPN_1701 IPR023001 Fructose-6-phosphate aldolase YPN_1701 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase YPN_1701 IPR018225 Transaldolase, active site YPN_1701 IPR033919 Transaldolase/Fructose-6-phosphate aldolase, archaeal/bacterial YPN_1701 IPR013785 Aldolase-type TIM barrel YPN_1702 IPR007423 Selenoprotein, putative YPN_1703 IPR025299 CstA, C-terminal domain YPN_1703 IPR003706 CstA, N-terminal domain YPN_1704 IPR011129 Cold shock domain YPN_1704 IPR040476 RNase II/RNase R, cold shock domain YPN_1704 IPR004476 Ribonuclease II/ribonuclease R YPN_1704 IPR022966 Ribonuclease II/R, conserved site YPN_1704 IPR001900 Ribonuclease II/R YPN_1704 IPR011804 Ribonuclease II YPN_1704 IPR003029 S1 domain YPN_1704 IPR013223 Ribonuclease B, N-terminal OB domain YPN_1704 IPR012340 Nucleic acid-binding, OB-fold YPN_1705 IPR020846 Major facilitator superfamily domain YPN_1705 IPR036259 MFS transporter superfamily YPN_1705 IPR011701 Major facilitator superfamily YPN_1706 IPR036291 NAD(P)-binding domain superfamily YPN_1706 IPR001509 NAD-dependent epimerase/dehydratase YPN_1707 IPR000445 Helix-hairpin-helix motif YPN_1707 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal YPN_1707 IPR004035 Endonuclease III, iron-sulphur binding site YPN_1707 IPR003265 HhH-GPD domain YPN_1707 IPR005759 Endonuclease III YPN_1707 IPR011257 DNA glycosylase YPN_1707 IPR004036 Endonuclease III-like, conserved site-2 YPN_1707 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif YPN_1708 IPR010968 Ion-translocating oxidoreductase complex subunit E YPN_1708 IPR003667 NqrDE/RnfAE YPN_1709 IPR007329 FMN-binding YPN_1709 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG YPN_1710 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D YPN_1710 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD YPN_1711 IPR020449 Transcription regulator HTH, AraC- type YPN_1711 IPR011256 Regulatory factor, effector binding domain superfamily YPN_1711 IPR018062 HTH domain AraC-type, conserved site YPN_1711 IPR018060 DNA binding HTH domain, AraC-type YPN_1711 IPR009057 Homeobox-like domain superfamily YPN_1711 IPR029442 GyrI-like small molecule binding domain YPN_1711 IPR010499 Bacterial transcription activator, effector binding YPN_1712 IPR019554 Soluble ligand binding domain YPN_1712 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC YPN_1712 IPR026902 RnfC Barrel sandwich hybrid domain YPN_1712 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily YPN_1712 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPN_1712 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain YPN_1712 IPR009051 Alpha-helical ferredoxin YPN_1712 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPN_1713 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPN_1713 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPN_1713 IPR011005 Dihydropteroate synthase-like YPN_1713 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB YPN_1713 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria YPN_1713 IPR007202 4Fe-4S domain YPN_1714 IPR003667 NqrDE/RnfAE YPN_1714 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA YPN_1715 IPR019690 Protein of unknown function DUF2569 YPN_1717 IPR003593 AAA+ ATPase domain YPN_1717 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPN_1717 IPR003439 ABC transporter-like YPN_1717 IPR017871 ABC transporter, conserved site YPN_1717 IPR010132 ATPase, type I secretion system, HlyB YPN_1717 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1717 IPR005074 Peptidase C39, bacteriocin processing YPN_1717 IPR039395 Peptidase C39-like A YPN_1717 IPR011527 ABC transporter type 1, transmembrane domain YPN_1717 IPR039421 Type I protein exporter YPN_1718 IPR017871 ABC transporter, conserved site YPN_1718 IPR003593 AAA+ ATPase domain YPN_1718 IPR003439 ABC transporter-like YPN_1718 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPN_1718 IPR010132 ATPase, type I secretion system, HlyB YPN_1718 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1718 IPR011527 ABC transporter type 1, transmembrane domain YPN_1718 IPR005074 Peptidase C39, bacteriocin processing YPN_1718 IPR039395 Peptidase C39-like A YPN_1718 IPR039421 Type I protein exporter YPN_1719 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YPN_1719 IPR006144 Secretion protein HlyD, conserved site YPN_1719 IPR010129 Type I secretion membrane fusion protein, HlyD family YPN_1720 IPR010129 Type I secretion membrane fusion protein, HlyD family YPN_1720 IPR006144 Secretion protein HlyD, conserved site YPN_1721 IPR003593 AAA+ ATPase domain YPN_1721 IPR011527 ABC transporter type 1, transmembrane domain YPN_1721 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPN_1721 IPR003439 ABC transporter-like YPN_1721 IPR005074 Peptidase C39, bacteriocin processing YPN_1721 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1721 IPR039421 Type I protein exporter YPN_1721 IPR017871 ABC transporter, conserved site YPN_1721 IPR039395 Peptidase C39-like A YPN_1721 IPR010132 ATPase, type I secretion system, HlyB YPN_1722 IPR003762 L-arabinose isomerase YPN_1722 IPR009015 L-fucose isomerase, N-terminal/central domain superfamily YPN_1722 IPR004216 L-fucose/L-arabinose isomerase, C-terminal YPN_1722 IPR038583 L-arabinose isomerase, N-terminal domain superfamily YPN_1722 IPR024664 L-arabinose isomerase, C-terminal YPN_1723 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPN_1723 IPR005929 Ribulokinase YPN_1724 IPR026266 L-arabinose-binding periplasmic protein YPN_1724 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPN_1724 IPR028082 Periplasmic binding protein-like I YPN_1725 IPR017871 ABC transporter, conserved site YPN_1725 IPR003439 ABC transporter-like YPN_1725 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1725 IPR017917 ABC transporter, arabinose import, ATP-binding protein, AraG YPN_1725 IPR003593 AAA+ ATPase domain YPN_1726 IPR001851 ABC transporter, permease YPN_1727 IPR020449 Transcription regulator HTH, AraC- type YPN_1727 IPR037923 Transcription regulator HTH-like YPN_1727 IPR018060 DNA binding HTH domain, AraC-type YPN_1727 IPR009057 Homeobox-like domain superfamily YPN_1727 IPR018062 HTH domain AraC-type, conserved site YPN_1727 IPR003313 AraC-type arabinose-binding/dimerisation domain YPN_1728 IPR020449 Transcription regulator HTH, AraC- type YPN_1728 IPR003313 AraC-type arabinose-binding/dimerisation domain YPN_1728 IPR009057 Homeobox-like domain superfamily YPN_1728 IPR018060 DNA binding HTH domain, AraC-type YPN_1728 IPR037923 Transcription regulator HTH-like YPN_1728 IPR018062 HTH domain AraC-type, conserved site YPN_1729 IPR004104 Oxidoreductase, C-terminal YPN_1729 IPR036291 NAD(P)-binding domain superfamily YPN_1729 IPR000683 Oxidoreductase, N-terminal YPN_1730 IPR038770 Sodium/solute symporter superfamily YPN_1730 IPR016833 Putative sodium bile acid cotransporter YPN_1733 IPR001207 Transposase, mutator type YPN_1734 IPR010352 Protein of unknown function DUF945 YPN_1735 IPR014710 RmlC-like jelly roll fold YPN_1735 IPR001250 Mannose-6-phosphate isomerase, type I YPN_1735 IPR016305 Mannose-6-phosphate isomerase YPN_1735 IPR018050 Phosphomannose isomerase, type I, conserved site YPN_1735 IPR011051 RmlC-like cupin domain superfamily YPN_1736 IPR005677 Fumarate hydratase, class II YPN_1736 IPR018951 Fumarase C, C-terminal YPN_1736 IPR022761 Fumarate lyase, N-terminal YPN_1736 IPR020557 Fumarate lyase, conserved site YPN_1736 IPR000362 Fumarate lyase family YPN_1736 IPR024083 Fumarase/histidase, N-terminal YPN_1736 IPR008948 L-Aspartase-like YPN_1737 IPR008865 DNA replication terminus site-binding protein YPN_1737 IPR036381 Replication terminator Tus, domain 1 YPN_1737 IPR036384 Replication terminator Tus superfamily YPN_1738 IPR020846 Major facilitator superfamily domain YPN_1738 IPR005829 Sugar transporter, conserved site YPN_1738 IPR036259 MFS transporter superfamily YPN_1738 IPR011701 Major facilitator superfamily YPN_1739 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1739 IPR000847 Transcription regulator HTH, LysR YPN_1739 IPR005119 LysR, substrate-binding YPN_1739 IPR036390 Winged helix DNA-binding domain superfamily YPN_1740 IPR000600 ROK family YPN_1740 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1740 IPR036390 Winged helix DNA-binding domain superfamily YPN_1741 IPR004472 Dethiobiotin synthase BioD YPN_1741 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1742 IPR001807 Chloride channel, voltage gated YPN_1742 IPR023790 Chloride channel, voltage-gated, ClcB YPN_1742 IPR014743 Chloride channel, core YPN_1743 IPR000843 LacI-type HTH domain YPN_1743 IPR028082 Periplasmic binding protein-like I YPN_1743 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPN_1745 IPR025997 Periplasmic binding protein YPN_1745 IPR028082 Periplasmic binding protein-like I YPN_1746 IPR010067 Aliphatic sulfonates-binding protein YPN_1746 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPN_1746 IPR015168 SsuA/THI5-like YPN_1747 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_1747 IPR035906 MetI-like superfamily YPN_1748 IPR003439 ABC transporter-like YPN_1748 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1748 IPR003593 AAA+ ATPase domain YPN_1749 IPR037109 AMP nucleoside phosphorylase, N-terminal domain superfamily YPN_1749 IPR035994 Nucleoside phosphorylase superfamily YPN_1749 IPR011271 AMP nucleosidase YPN_1749 IPR018953 AMP nucleoside phosphorylase, N-terminal YPN_1749 IPR000845 Nucleoside phosphorylase domain YPN_1755 IPR000399 TPP-binding enzyme, conserved site YPN_1755 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPN_1755 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPN_1755 IPR029061 Thiamin diphosphate-binding fold YPN_1755 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPN_1755 IPR039368 Acetolactate synthase large subunit, TPP binding domain YPN_1755 IPR012846 Acetolactate synthase, large subunit, biosynthetic YPN_1755 IPR012000 Thiamine pyrophosphate enzyme, central domain YPN_1756 IPR039557 AHAS, ACT domain YPN_1756 IPR002912 ACT domain YPN_1756 IPR004789 Acetolactate synthase, small subunit YPN_1757 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPN_1757 IPR023214 HAD superfamily YPN_1757 IPR036412 HAD-like superfamily YPN_1757 IPR006439 HAD hydrolase, subfamily IA YPN_1757 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB YPN_1757 IPR041492 Haloacid dehalogenase-like hydrolase YPN_1759 IPR018299 Alkaline phosphatase, active site YPN_1759 IPR001952 Alkaline phosphatase YPN_1759 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPN_1760 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1760 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily YPN_1760 IPR023546 Methylated-DNA--protein-cysteine methyltransferase YPN_1760 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain YPN_1760 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain YPN_1760 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YPN_1760 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site YPN_1761 IPR018490 Cyclic nucleotide-binding-like YPN_1761 IPR000595 Cyclic nucleotide-binding domain YPN_1761 IPR012318 Crp-type HTH domain YPN_1761 IPR014710 RmlC-like jelly roll fold YPN_1761 IPR018335 Transcription regulator HTH, Crp-type, conserved site YPN_1761 IPR036390 Winged helix DNA-binding domain superfamily YPN_1761 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1762 IPR006016 UspA YPN_1763 IPR034300 NADP transhydrogenase beta-like domain YPN_1763 IPR012136 NADP transhydrogenase, beta subunit YPN_1763 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPN_1764 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 YPN_1764 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal YPN_1764 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain YPN_1764 IPR036291 NAD(P)-binding domain superfamily YPN_1764 IPR026255 NAD(P) transhydrogenase, alpha subunit YPN_1764 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal YPN_1764 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 YPN_1765 IPR025543 Dodecin-like YPN_1765 IPR025539 YdgH protein YPN_1765 IPR010854 Domain of unknown function DUF1471 YPN_1765 IPR036275 YdgH-like superfamily YPN_1766 IPR002293 Amino acid/polyamine transporter I YPN_1766 IPR004754 Amino acid antiporter YPN_1768 IPR039420 Transcriptional regulatory protein WalR-like YPN_1768 IPR001789 Signal transduction response regulator, receiver domain YPN_1768 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1768 IPR016032 Signal transduction response regulator, C-terminal effector YPN_1768 IPR001867 OmpR/PhoB-type DNA-binding domain YPN_1768 IPR011006 CheY-like superfamily YPN_1769 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPN_1769 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPN_1769 IPR005467 Histidine kinase domain YPN_1769 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPN_1769 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_1769 IPR003660 HAMP domain YPN_1769 IPR003594 Histidine kinase/HSP90-like ATPase YPN_1771 IPR001207 Transposase, mutator type YPN_1772 IPR001333 Peptidase M32, carboxypeptidase Taq YPN_1774 IPR022385 Rhs repeat-associated core YPN_1774 IPR041508 Toxin complex C-like repeat YPN_1774 IPR025968 YwqJ-like deaminase YPN_1777 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase YPN_1777 IPR016174 Di-haem cytochrome, transmembrane YPN_1779 IPR009003 Peptidase S1, PA clan YPN_1779 IPR008256 Peptidase S1B YPN_1779 IPR018114 Serine proteases, trypsin family, histidine active site YPN_1779 IPR033116 Serine proteases, trypsin family, serine active site YPN_1779 IPR001254 Serine proteases, trypsin domain YPN_1781 IPR011709 Domain of unknown function DUF1605 YPN_1781 IPR007502 Helicase-associated domain YPN_1781 IPR011545 DEAD/DEAH box helicase domain YPN_1781 IPR003593 AAA+ ATPase domain YPN_1781 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPN_1781 IPR001650 Helicase, C-terminal YPN_1781 IPR024590 RNA helicase HrpA, C-terminal YPN_1781 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1781 IPR010222 RNA helicase HrpA YPN_1782 IPR023048 NADH-azoreductase, FMN-dependent YPN_1782 IPR003680 Flavodoxin-like fold YPN_1782 IPR029039 Flavoprotein-like superfamily YPN_1783 IPR012318 Crp-type HTH domain YPN_1783 IPR037171 NagB/RpiA transferase-like YPN_1783 IPR007324 Sugar-binding domain, putative YPN_1783 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1784 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPN_1784 IPR036291 NAD(P)-binding domain superfamily YPN_1784 IPR013131 Mannitol dehydrogenase, N-terminal YPN_1784 IPR013118 Mannitol dehydrogenase, C-terminal YPN_1784 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPN_1784 IPR000669 Mannitol dehydrogenase YPN_1785 IPR008309 Uncharacterised conserved protein UCP025560 YPN_1786 IPR025985 YnbE-like lipoprotein YPN_1787 IPR021730 Dicarboxylate transport YPN_1788 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPN_1788 IPR036291 NAD(P)-binding domain superfamily YPN_1788 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPN_1788 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPN_1788 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPN_1789 IPR038670 HslJ-like superfamily YPN_1789 IPR005184 Domain of unknown function DUF306, Meta/HslJ YPN_1790 IPR005590 Protein of unknown function DUF333 YPN_1791 IPR003416 MgtC/SapB/SrpB/YhiD family YPN_1792 IPR000390 Small multidrug resistance protein family YPN_1793 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain YPN_1793 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPN_1793 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPN_1793 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II YPN_1793 IPR037112 Pyruvate-flavodoxin oxidoreductase, EKR domain superfamily YPN_1793 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain YPN_1793 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal YPN_1793 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain YPN_1793 IPR011895 Pyruvate-flavodoxin oxidoreductase YPN_1793 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPN_1793 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II YPN_1793 IPR029061 Thiamin diphosphate-binding fold YPN_1794 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal YPN_1794 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase YPN_1794 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type YPN_1794 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_1795 IPR013094 Alpha/beta hydrolase fold-3 YPN_1795 IPR013830 SGNH hydrolase-type esterase domain YPN_1795 IPR036514 SGNH hydrolase superfamily YPN_1795 IPR029058 Alpha/Beta hydrolase fold YPN_1798 IPR023714 Zinc transport protein ZntB YPN_1798 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB YPN_1799 IPR023765 Solute-binding protein family 5, conserved site YPN_1799 IPR030678 Peptide/nickel binding protein, MppA-type YPN_1799 IPR039424 Solute-binding protein family 5 YPN_1799 IPR000914 Solute-binding protein family 5 domain YPN_1800 IPR000834 Peptidase M14, carboxypeptidase A YPN_1801 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain YPN_1801 IPR034603 Dipeptide epimerase YPN_1801 IPR036849 Enolase-like, C-terminal domain superfamily YPN_1801 IPR029017 Enolase-like, N-terminal YPN_1801 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site YPN_1801 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal YPN_1801 IPR029065 Enolase C-terminal domain-like YPN_1802 IPR002065 Thiol peroxidase Tpx YPN_1802 IPR013766 Thioredoxin domain YPN_1802 IPR013740 Redoxin YPN_1802 IPR036249 Thioredoxin-like superfamily YPN_1802 IPR018219 Thiol peroxidase conserved site YPN_1803 IPR036515 Transposase IS200-like superfamily YPN_1803 IPR002686 Transposase IS200-like YPN_1804 IPR025944 Sigma-54 interaction domain, conserved site YPN_1804 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPN_1804 IPR003593 AAA+ ATPase domain YPN_1804 IPR035965 PAS domain superfamily YPN_1804 IPR000014 PAS domain YPN_1804 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1804 IPR009057 Homeobox-like domain superfamily YPN_1804 IPR002912 ACT domain YPN_1804 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPN_1804 IPR030828 TyrR family, helix-turn-helix domain YPN_1804 IPR002078 RNA polymerase sigma factor 54 interaction domain YPN_1807 IPR021147 Protein of unknown function DUF697 YPN_1807 IPR006507 Uncharacterised protein family UPF0283 YPN_1808 IPR007413 Protein of unknown function DUF463, YcjX-like protein YPN_1810 IPR007168 Phage shock protein, PspC, N-terminal YPN_1810 IPR014320 Phage shock protein, PspC YPN_1811 IPR009554 Phage shock protein B YPN_1812 IPR014319 Phage shock protein, PspA YPN_1812 IPR007157 PspA/IM30 YPN_1813 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1813 IPR002078 RNA polymerase sigma factor 54 interaction domain YPN_1813 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPN_1813 IPR009057 Homeobox-like domain superfamily YPN_1813 IPR014317 Transcription activator PspF YPN_1813 IPR003593 AAA+ ATPase domain YPN_1813 IPR025944 Sigma-54 interaction domain, conserved site YPN_1813 IPR002197 DNA binding HTH domain, Fis-type YPN_1815 IPR023765 Solute-binding protein family 5, conserved site YPN_1815 IPR039424 Solute-binding protein family 5 YPN_1815 IPR030678 Peptide/nickel binding protein, MppA-type YPN_1815 IPR000914 Solute-binding protein family 5 domain YPN_1816 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_1816 IPR035906 MetI-like superfamily YPN_1817 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_1817 IPR035906 MetI-like superfamily YPN_1817 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPN_1818 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPN_1818 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1818 IPR003439 ABC transporter-like YPN_1818 IPR003593 AAA+ ATPase domain YPN_1819 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1819 IPR003593 AAA+ ATPase domain YPN_1819 IPR003439 ABC transporter-like YPN_1819 IPR017871 ABC transporter, conserved site YPN_1820 IPR029032 AhpD-like YPN_1821 IPR000109 Proton-dependent oligopeptide transporter family YPN_1821 IPR023517 Amino acid/peptide transporter family, dipeptide and tripeptide permease A YPN_1821 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site YPN_1821 IPR036259 MFS transporter superfamily YPN_1821 IPR005279 Dipeptide/tripeptide permease YPN_1822 IPR006977 Yip1 domain YPN_1823 IPR020317 Uncharacterised protein family YjbD YPN_1824 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YPN_1824 IPR040079 Glutathione Transferase family YPN_1824 IPR004045 Glutathione S-transferase, N-terminal YPN_1824 IPR004046 Glutathione S-transferase, C-terminal YPN_1824 IPR010987 Glutathione S-transferase, C-terminal-like YPN_1824 IPR036249 Thioredoxin-like superfamily YPN_1825 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase YPN_1825 IPR004625 Pyridoxine kinase YPN_1825 IPR029056 Ribokinase-like YPN_1825 IPR023685 Pyridoxal kinase PdxY YPN_1826 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPN_1826 IPR002305 Aminoacyl-tRNA synthetase, class Ic YPN_1826 IPR002942 RNA-binding S4 domain YPN_1826 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_1826 IPR002307 Tyrosine-tRNA ligase YPN_1826 IPR024088 Tyrosine-tRNA ligase, bacterial-type YPN_1826 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 YPN_1826 IPR036986 RNA-binding S4 domain superfamily YPN_1827 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative YPN_1827 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site YPN_1827 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal YPN_1827 IPR000659 Pyridoxamine 5'-phosphate oxidase YPN_1827 IPR012349 FMN-binding split barrel YPN_1828 IPR036328 C-type lysozyme inhibitor superfamily YPN_1828 IPR018660 C-type lysozyme inhibitor YPN_1829 IPR005338 Anhydro-N-acetylmuramic acid kinase YPN_1830 IPR008816 Glycine zipper 2TM domain YPN_1831 IPR000835 MarR-type HTH domain YPN_1831 IPR023187 Transcriptional regulator MarR-type, conserved site YPN_1831 IPR023071 Transcriptional regulator, SlyA YPN_1831 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1831 IPR036390 Winged helix DNA-binding domain superfamily YPN_1832 IPR012549 Phosphoethanolamine transferase, N-terminal YPN_1832 IPR040423 Phosphoethanolamine transferase YPN_1832 IPR000917 Sulfatase, N-terminal YPN_1832 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPN_1833 IPR001647 DNA-binding HTH domain, TetR-type YPN_1833 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPN_1833 IPR009057 Homeobox-like domain superfamily YPN_1833 IPR011075 Tetracyclin repressor-like, C-terminal domain YPN_1834 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal YPN_1834 IPR013785 Aldolase-type TIM barrel YPN_1835 IPR022385 Rhs repeat-associated core YPN_1835 IPR041508 Toxin complex C-like repeat YPN_1835 IPR025968 YwqJ-like deaminase YPN_1836 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YPN_1836 IPR037523 Vicinal oxygen chelate (VOC) domain YPN_1836 IPR018146 Glyoxalase I, conserved site YPN_1836 IPR004361 Glyoxalase I YPN_1836 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain YPN_1837 IPR036397 Ribonuclease H superfamily YPN_1837 IPR012337 Ribonuclease H-like superfamily YPN_1837 IPR005987 Ribonuclease T YPN_1837 IPR013520 Exonuclease, RNase T/DNA polymerase III YPN_1838 IPR036249 Thioredoxin-like superfamily YPN_1838 IPR002109 Glutaredoxin YPN_1838 IPR004480 Monothiol glutaredoxin-related YPN_1838 IPR014434 Monothiol glutaredoxin YPN_1838 IPR033658 Glutaredoxin, PICOT-like YPN_1839 IPR038765 Papain-like cysteine peptidase superfamily YPN_1839 IPR000064 Endopeptidase, NLPC/P60 domain YPN_1840 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily YPN_1840 IPR019833 Manganese/iron superoxide dismutase, binding site YPN_1840 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily YPN_1840 IPR001189 Manganese/iron superoxide dismutase YPN_1840 IPR019831 Manganese/iron superoxide dismutase, N-terminal YPN_1840 IPR019832 Manganese/iron superoxide dismutase, C-terminal YPN_1841 IPR028082 Periplasmic binding protein-like I YPN_1841 IPR000843 LacI-type HTH domain YPN_1841 IPR023588 Transcription regulator HTH, PurR YPN_1841 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPN_1842 IPR036390 Winged helix DNA-binding domain superfamily YPN_1842 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1842 IPR000847 Transcription regulator HTH, LysR YPN_1842 IPR005119 LysR, substrate-binding YPN_1843 IPR004812 Drug resistance transporter Bcr/CmlA subfamily YPN_1843 IPR011701 Major facilitator superfamily YPN_1843 IPR020846 Major facilitator superfamily domain YPN_1843 IPR036259 MFS transporter superfamily YPN_1844 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_1844 IPR003333 Mycolic acid cyclopropane synthase YPN_1845 IPR001783 Lumazine-binding protein YPN_1845 IPR026017 Lumazine-binding domain YPN_1845 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily YPN_1845 IPR017938 Riboflavin synthase-like beta-barrel YPN_1846 IPR022913 Multidrug resistance protein MdtK YPN_1846 IPR002528 Multi antimicrobial extrusion protein YPN_1847 IPR040442 Pyruvate kinase-like domain superfamily YPN_1847 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPN_1847 IPR001697 Pyruvate kinase YPN_1847 IPR011037 Pyruvate kinase-like, insert domain superfamily YPN_1847 IPR015793 Pyruvate kinase, barrel YPN_1847 IPR036918 Pyruvate kinase, C-terminal domain superfamily YPN_1847 IPR015795 Pyruvate kinase, C-terminal YPN_1847 IPR015806 Pyruvate kinase, insert domain superfamily YPN_1847 IPR018209 Pyruvate kinase, active site YPN_1848 IPR016367 Murein-lipoprotein YPN_1848 IPR006817 Lipoprotein leucine-zipper YPN_1849 IPR029060 PIN-like domain superfamily YPN_1849 IPR008918 Helix-hairpin-helix motif, class 2 YPN_1849 IPR020045 DNA polymerase I-like, H3TH domain YPN_1849 IPR038969 Flap endonuclease YPN_1849 IPR002421 5'-3' exonuclease, N-terminal YPN_1849 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal YPN_1849 IPR036279 5'-3' exonuclease, C-terminal domain superfamily YPN_1850 IPR001584 Integrase, catalytic core YPN_1850 IPR017894 HTH domain, IS21 transposase-type YPN_1850 IPR012337 Ribonuclease H-like superfamily YPN_1850 IPR036397 Ribonuclease H superfamily YPN_1850 IPR006120 Resolvase, HTH domain YPN_1851 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_1851 IPR001270 ClpA/B family YPN_1851 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1851 IPR002611 IstB-like ATP-binding protein YPN_1851 IPR003593 AAA+ ATPase domain YPN_1853 IPR005490 L,D-transpeptidase catalytic domain YPN_1853 IPR041597 L,D-transpeptidase C-terminal domain YPN_1853 IPR038063 L,D-transpeptidase catalytic domain-like YPN_1853 IPR018392 LysM domain YPN_1854 IPR003808 Fe-S metabolism associated domain, SufE-like YPN_1854 IPR023939 Cysteine desulfuration protein SufE YPN_1855 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPN_1855 IPR000192 Aminotransferase class V domain YPN_1855 IPR010970 Cysteine desulfurase, SufS YPN_1855 IPR015424 Pyridoxal phosphate-dependent transferase YPN_1855 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_1855 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_1856 IPR000825 SUF system FeS cluster assembly, SufBD YPN_1856 IPR011542 SUF system FeS cluster assembly, SufD YPN_1856 IPR037284 SUF system FeS cluster assembly, SufBD superfamily YPN_1857 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1857 IPR010230 FeS cluster assembly SUF system, ATPase SufC YPN_1857 IPR017871 ABC transporter, conserved site YPN_1857 IPR003439 ABC transporter-like YPN_1857 IPR003593 AAA+ ATPase domain YPN_1858 IPR010231 SUF system FeS cluster assembly, SufB YPN_1858 IPR000825 SUF system FeS cluster assembly, SufBD YPN_1858 IPR037284 SUF system FeS cluster assembly, SufBD superfamily YPN_1859 IPR011298 FeS assembly scaffold SufA YPN_1859 IPR016092 FeS cluster insertion protein YPN_1859 IPR017870 FeS cluster insertion, C-terminal, conserved site YPN_1859 IPR035903 HesB-like domain superfamily YPN_1859 IPR000361 FeS cluster biogenesis YPN_1860 IPR030863 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, MenI YPN_1860 IPR006683 Thioesterase domain YPN_1860 IPR003736 Phenylacetic acid degradation-related domain YPN_1860 IPR029069 HotDog domain superfamily YPN_1861 IPR016166 FAD-binding domain, PCMH-type YPN_1861 IPR009051 Alpha-helical ferredoxin YPN_1861 IPR004113 FAD-linked oxidase, C-terminal YPN_1861 IPR016164 FAD-linked oxidase-like, C-terminal YPN_1861 IPR006094 FAD linked oxidase, N-terminal YPN_1861 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPN_1861 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPN_1861 IPR036318 FAD-binding, type PCMH-like superfamily YPN_1862 IPR002549 Transmembrane protein TqsA-like YPN_1863 IPR036637 Phosphohistidine domain superfamily YPN_1863 IPR023151 PEP-utilising enzyme, conserved site YPN_1863 IPR000121 PEP-utilising enzyme, C-terminal YPN_1863 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding YPN_1863 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPN_1863 IPR018274 PEP-utilising enzyme, active site YPN_1863 IPR006319 Phosphoenolpyruvate synthase YPN_1863 IPR008279 PEP-utilising enzyme, mobile domain YPN_1863 IPR013815 ATP-grasp fold, subdomain 1 YPN_1863 IPR040442 Pyruvate kinase-like domain superfamily YPN_1864 IPR005177 Bifunctional kinase-pyrophosphorylase YPN_1864 IPR026530 Phosphoenolpyruvate synthase regulatory protein YPN_1864 IPR008917 Transcription factor, Skn-1-like, DNA-binding domain superfamily YPN_1865 IPR013785 Aldolase-type TIM barrel YPN_1865 IPR006218 DAHP synthetase I/KDSA YPN_1865 IPR006219 DHAP synthase, class 1 YPN_1866 IPR003846 Protein adenylyltransferase SelO YPN_1867 IPR003846 Protein adenylyltransferase SelO YPN_1868 IPR019491 Lipoate protein ligase, C-terminal YPN_1868 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain YPN_1868 IPR004562 Lipoyltransferase/lipoate-protein ligase YPN_1868 IPR023741 Lipoate-protein ligase A YPN_1869 IPR038765 Papain-like cysteine peptidase superfamily YPN_1869 IPR000064 Endopeptidase, NLPC/P60 domain YPN_1870 IPR000390 Small multidrug resistance protein family YPN_1870 IPR022832 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF YPN_1871 IPR022883 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase, subunit ArnE YPN_1871 IPR000620 EamA domain YPN_1871 IPR000390 Small multidrug resistance protein family YPN_1872 IPR022839 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase YPN_1872 IPR003342 Glycosyl transferase family 39/83 YPN_1873 IPR023557 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD, probable YPN_1873 IPR002509 NodB homology domain YPN_1873 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPN_1874 IPR001509 NAD-dependent epimerase/dehydratase YPN_1874 IPR036291 NAD(P)-binding domain superfamily YPN_1874 IPR005793 Formyl transferase, C-terminal YPN_1874 IPR021168 Bifunctional polymyxin resistance protein, ArnA YPN_1874 IPR011034 Formyl transferase-like, C-terminal domain superfamily YPN_1874 IPR002376 Formyl transferase, N-terminal YPN_1874 IPR036477 Formyl transferase, N-terminal domain superfamily YPN_1875 IPR029044 Nucleotide-diphospho-sugar transferases YPN_1875 IPR022857 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase YPN_1875 IPR001173 Glycosyltransferase 2-like YPN_1876 IPR022850 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, ArnB YPN_1876 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YPN_1876 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_1876 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_1876 IPR015424 Pyridoxal phosphate-dependent transferase YPN_1877 IPR003439 ABC transporter-like YPN_1877 IPR023693 ABC transporter, vitamin B12, BtuD YPN_1877 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1877 IPR017871 ABC transporter, conserved site YPN_1877 IPR003593 AAA+ ATPase domain YPN_1878 IPR033674 Thioredoxin/glutathione peroxidase BtuE YPN_1878 IPR036249 Thioredoxin-like superfamily YPN_1878 IPR029760 Glutathione peroxidase conserved site YPN_1878 IPR029759 Glutathione peroxidase active site YPN_1878 IPR000889 Glutathione peroxidase YPN_1879 IPR037294 ABC transporter, BtuC-like YPN_1879 IPR023691 ABC transporter, vitamin B12 import, permease protein BtuC YPN_1879 IPR000522 ABC transporter, permease protein, BtuC-like YPN_1881 IPR000119 Histone-like DNA-binding protein YPN_1881 IPR020816 Histone-like DNA-binding protein, conserved site YPN_1881 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily YPN_1881 IPR005684 Integration host factor, alpha subunit YPN_1882 IPR012340 Nucleic acid-binding, OB-fold YPN_1882 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit YPN_1882 IPR005147 tRNA synthetase, B5-domain YPN_1882 IPR002547 tRNA-binding domain YPN_1882 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain YPN_1882 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily YPN_1882 IPR005121 Ferrodoxin-fold anticodon-binding domain YPN_1882 IPR009061 Putative DNA-binding domain superfamily YPN_1882 IPR005146 B3/B4 tRNA-binding domain YPN_1882 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 YPN_1882 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain YPN_1883 IPR002319 Phenylalanyl-tRNA synthetase YPN_1883 IPR006195 Aminoacyl-tRNA synthetase, class II YPN_1883 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial YPN_1883 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal YPN_1883 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit YPN_1883 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm YPN_1885 IPR005813 Ribosomal protein L20 YPN_1885 IPR035566 Ribosomal protein L20, C-terminal YPN_1886 IPR037229 Ribosomal protein L35 superfamily YPN_1886 IPR001706 Ribosomal protein L35, non-mitochondrial YPN_1886 IPR018265 Ribosomal protein L35, conserved site YPN_1886 IPR021137 Ribosomal protein L35 YPN_1887 IPR001288 Translation initiation factor 3 YPN_1887 IPR019813 Translation initiation factor 3, conserved site YPN_1887 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily YPN_1887 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily YPN_1887 IPR019815 Translation initiation factor 3, C-terminal YPN_1887 IPR019814 Translation initiation factor 3, N-terminal YPN_1888 IPR012676 TGS-like YPN_1888 IPR002320 Threonine-tRNA ligase, class IIa YPN_1888 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) YPN_1888 IPR012947 Threonyl/alanyl tRNA synthetase, SAD YPN_1888 IPR012675 Beta-grasp domain superfamily YPN_1888 IPR006195 Aminoacyl-tRNA synthetase, class II YPN_1888 IPR033728 Threonine-tRNA ligase catalytic core domain YPN_1888 IPR036621 Anticodon-binding domain superfamily YPN_1888 IPR004154 Anticodon-binding YPN_1888 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily YPN_1888 IPR004095 TGS YPN_1889 IPR025309 KTSC domain YPN_1891 IPR002771 Multiple antibiotic resistance (MarC)-related YPN_1892 IPR008258 Transglycosylase SLT domain 1 YPN_1892 IPR000189 Prokaryotic transglycosylase, active site YPN_1892 IPR023346 Lysozyme-like domain superfamily YPN_1892 IPR023946 Endo-type membrane-bound lytic murein transglycosylase A YPN_1893 IPR006128 Adhesion lipoprotein YPN_1893 IPR006127 Periplasmic solute binding protein, ZnuA-like YPN_1893 IPR006129 Adhesin B YPN_1894 IPR003593 AAA+ ATPase domain YPN_1894 IPR003439 ABC transporter-like YPN_1894 IPR017871 ABC transporter, conserved site YPN_1894 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1895 IPR001626 ABC transporter, TroCD-like YPN_1895 IPR037294 ABC transporter, BtuC-like YPN_1896 IPR037294 ABC transporter, BtuC-like YPN_1896 IPR001626 ABC transporter, TroCD-like YPN_1899 IPR025229 YniB-like protein YPN_1900 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPN_1900 IPR023214 HAD superfamily YPN_1900 IPR036412 HAD-like superfamily YPN_1900 IPR041492 Haloacid dehalogenase-like hydrolase YPN_1900 IPR006439 HAD hydrolase, subfamily IA YPN_1901 IPR001207 Transposase, mutator type YPN_1902 IPR001207 Transposase, mutator type YPN_1904 IPR013096 Cupin 2, conserved barrel YPN_1904 IPR025499 Pectin degradation protein KdgF YPN_1904 IPR014710 RmlC-like jelly roll fold YPN_1904 IPR011051 RmlC-like cupin domain superfamily YPN_1905 IPR007045 5-keto 4-deoxyuronate isomerase YPN_1905 IPR021120 KduI/IolB isomerase YPN_1905 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal YPN_1905 IPR014710 RmlC-like jelly roll fold YPN_1905 IPR011051 RmlC-like cupin domain superfamily YPN_1906 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase YPN_1906 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPN_1906 IPR002347 Short-chain dehydrogenase/reductase SDR YPN_1906 IPR036291 NAD(P)-binding domain superfamily YPN_1907 IPR010702 Periplasmic pectate lyase YPN_1908 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_1908 IPR035906 MetI-like superfamily YPN_1909 IPR035906 MetI-like superfamily YPN_1909 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_1910 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1910 IPR003593 AAA+ ATPase domain YPN_1910 IPR003439 ABC transporter-like YPN_1910 IPR017871 ABC transporter, conserved site YPN_1910 IPR008995 Molybdate/tungstate binding, C-terminal YPN_1910 IPR040582 MalK, OB fold domain YPN_1910 IPR005116 Transport-associated OB, type 1 YPN_1911 IPR006059 Bacterial extracellular solute-binding protein YPN_1912 IPR009331 Oligogalacturonate-specific porin YPN_1913 IPR007404 LexA-binding, inner membrane-associated putative hydrolase YPN_1913 IPR016956 Inner membrane protein YdjM YPN_1915 IPR036365 PGBD-like superfamily YPN_1915 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily YPN_1915 IPR036366 PGBD superfamily YPN_1915 IPR002502 N-acetylmuramoyl-L-alanine amidase domain YPN_1916 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1916 IPR014757 Transcription regulator IclR, C-terminal YPN_1916 IPR011991 ArsR-like helix-turn-helix domain YPN_1916 IPR005471 Transcription regulator IclR, N-terminal YPN_1916 IPR029016 GAF-like domain superfamily YPN_1916 IPR036390 Winged helix DNA-binding domain superfamily YPN_1917 IPR027946 Oligogalacturonate lyase domain YPN_1917 IPR015943 WD40/YVTN repeat-like-containing domain superfamily YPN_1918 IPR036259 MFS transporter superfamily YPN_1918 IPR020846 Major facilitator superfamily domain YPN_1918 IPR011701 Major facilitator superfamily YPN_1919 IPR016147 Pili assembly chaperone, N-terminal YPN_1919 IPR013783 Immunoglobulin-like fold YPN_1919 IPR018046 Pili assembly chaperone, conserved site YPN_1919 IPR016148 Pili assembly chaperone, C-terminal YPN_1919 IPR001829 Pili assembly chaperone, bacterial YPN_1919 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPN_1919 IPR008962 PapD-like superfamily YPN_1921 IPR037224 PapC, N-terminal domain superfamily YPN_1921 IPR025885 PapC, N-terminal domain YPN_1921 IPR025949 PapC-like, C-terminal domain YPN_1921 IPR042186 Outer membrane usher protein FimD, plug domain YPN_1921 IPR000015 Outer membrane usher protein YPN_1921 IPR018030 Fimbrial membrane usher, conserved site YPN_1922 IPR013783 Immunoglobulin-like fold YPN_1922 IPR018046 Pili assembly chaperone, conserved site YPN_1922 IPR008962 PapD-like superfamily YPN_1922 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPN_1922 IPR001829 Pili assembly chaperone, bacterial YPN_1922 IPR016148 Pili assembly chaperone, C-terminal YPN_1922 IPR016147 Pili assembly chaperone, N-terminal YPN_1923 IPR036937 Fimbrial-type adhesion domain superfamily YPN_1923 IPR008966 Adhesion domain superfamily YPN_1923 IPR000259 Fimbrial-type adhesion domain YPN_1924 IPR022919 Peptidase M48, protease HtpX, putative YPN_1924 IPR001915 Peptidase M48 YPN_1925 IPR029045 ClpP/crotonase-like domain superfamily YPN_1925 IPR005151 Tail specific protease YPN_1925 IPR004447 C-terminal-processing peptidase S41A YPN_1925 IPR020992 Tail specific protease, C-terminal YPN_1925 IPR036034 PDZ superfamily YPN_1925 IPR001478 PDZ domain YPN_1925 IPR040573 Tail specific protease, N-terminal domain YPN_1926 IPR023529 RNA chaperone ProQ YPN_1926 IPR035236 RNA chaperone ProQ, C-terminal YPN_1926 IPR016103 ProQ/FinO domain YPN_1926 IPR036442 ProQ/FinO domain superfamily YPN_1927 IPR003018 GAF domain YPN_1927 IPR029016 GAF-like domain superfamily YPN_1927 IPR000614 Free Met sulfoxide reductase conserved site YPN_1928 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type YPN_1928 IPR007498 Intermembrane transport protein PqiA-like YPN_1928 IPR011031 Multihaem cytochrome YPN_1929 IPR003399 Mce/MlaD YPN_1933 IPR008962 PapD-like superfamily YPN_1933 IPR001829 Pili assembly chaperone, bacterial YPN_1933 IPR016148 Pili assembly chaperone, C-terminal YPN_1933 IPR018046 Pili assembly chaperone, conserved site YPN_1933 IPR013783 Immunoglobulin-like fold YPN_1933 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPN_1933 IPR016147 Pili assembly chaperone, N-terminal YPN_1936 IPR009950 Protein of unknown function DUF1480 YPN_1939 IPR001584 Integrase, catalytic core YPN_1939 IPR006120 Resolvase, HTH domain YPN_1939 IPR036397 Ribonuclease H superfamily YPN_1939 IPR012337 Ribonuclease H-like superfamily YPN_1939 IPR017894 HTH domain, IS21 transposase-type YPN_1940 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_1940 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_1940 IPR001270 ClpA/B family YPN_1940 IPR002611 IstB-like ATP-binding protein YPN_1940 IPR003593 AAA+ ATPase domain YPN_1944 IPR001608 Alanine racemase, N-terminal YPN_1944 IPR000821 Alanine racemase YPN_1944 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal YPN_1944 IPR011079 Alanine racemase, C-terminal YPN_1944 IPR029066 PLP-binding barrel YPN_1944 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site YPN_1946 IPR024973 ESPR domain YPN_1946 IPR008640 Head domain of trimeric autotransporter adhesin YPN_1946 IPR008635 Coiled stalk of trimeric autotransporter adhesin YPN_1946 IPR011049 Serralysin-like metalloprotease, C-terminal YPN_1946 IPR005594 YadA-like, C-terminal YPN_1947 IPR008640 Head domain of trimeric autotransporter adhesin YPN_1947 IPR008635 Coiled stalk of trimeric autotransporter adhesin YPN_1947 IPR024973 ESPR domain YPN_1947 IPR011049 Serralysin-like metalloprotease, C-terminal YPN_1947 IPR005594 YadA-like, C-terminal YPN_1948 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily YPN_1948 IPR036365 PGBD-like superfamily YPN_1948 IPR002502 N-acetylmuramoyl-L-alanine amidase domain YPN_1948 IPR036366 PGBD superfamily YPN_1950 IPR007439 Chemotaxis phosphatase, CheZ YPN_1951 IPR001789 Signal transduction response regulator, receiver domain YPN_1951 IPR011006 CheY-like superfamily YPN_1952 IPR008248 Protein-glutamate methylesterase/protein-glutamine glutaminase, CheB type YPN_1952 IPR001789 Signal transduction response regulator, receiver domain YPN_1952 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase YPN_1952 IPR011006 CheY-like superfamily YPN_1952 IPR035909 Methylesterase CheB, C-terminal YPN_1953 IPR026024 Chemotaxis protein methyltransferase CheR YPN_1953 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_1953 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily YPN_1953 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal YPN_1953 IPR000780 MCP methyltransferase, CheR-type YPN_1953 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal YPN_1954 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding YPN_1954 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPN_1954 IPR004090 Chemotaxis methyl-accepting receptor YPN_1954 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YPN_1954 IPR003660 HAMP domain YPN_1954 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPN_1955 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPN_1955 IPR003660 HAMP domain YPN_1955 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPN_1955 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding YPN_1955 IPR004090 Chemotaxis methyl-accepting receptor YPN_1955 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YPN_1958 IPR006315 Outer membrane autotransporter barrel YPN_1958 IPR005546 Autotransporter beta-domain YPN_1958 IPR036709 Autotransporter beta-domain superfamily YPN_1958 IPR013425 Autotransporter-associated beta strand repeat YPN_1958 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPN_1958 IPR011050 Pectin lyase fold/virulence factor YPN_1959 IPR039446 Transcriptional regulator DauR-like YPN_1959 IPR039445 Transcriptional regulator DauR-like, HTH domain YPN_1959 IPR013559 YheO-like YPN_1961 IPR006175 YjgF/YER057c/UK114 family YPN_1961 IPR035959 RutC-like superfamily YPN_1961 IPR006056 RidA family YPN_1961 IPR019897 RidA, conserved site YPN_1962 IPR020846 Major facilitator superfamily domain YPN_1962 IPR036259 MFS transporter superfamily YPN_1962 IPR011701 Major facilitator superfamily YPN_1963 IPR002545 CheW-like domain YPN_1963 IPR039315 Chemotaxis protein CheW YPN_1963 IPR036061 CheW-like domain superfamily YPN_1964 IPR036641 HPT domain superfamily YPN_1964 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPN_1964 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_1964 IPR002545 CheW-like domain YPN_1964 IPR015162 CheY binding YPN_1964 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPN_1964 IPR036061 CheW-like domain superfamily YPN_1964 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily YPN_1964 IPR004105 Histidine kinase CheA-like, homodimeric domain YPN_1964 IPR005467 Histidine kinase domain YPN_1964 IPR035891 CheY-binding domain of CheA YPN_1964 IPR003594 Histidine kinase/HSP90-like ATPase YPN_1964 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPN_1965 IPR036737 OmpA-like domain superfamily YPN_1965 IPR006665 OmpA-like domain YPN_1965 IPR025713 Motility protein B, N-terminal domain YPN_1966 IPR000540 Flagellar motor protein MotA, conserved site YPN_1966 IPR022522 Flagellar motor stator, MotA YPN_1966 IPR002898 MotA/TolQ/ExbB proton channel YPN_1967 IPR007944 Flagellar transcriptional activator FlhC YPN_1968 IPR023559 Flagellar transcriptional activator FlhD YPN_1968 IPR036194 Flagellar transcriptional activator FlhD superfamily YPN_1969 IPR023298 P-type ATPase, transmembrane domain superfamily YPN_1969 IPR008250 P-type ATPase, A domain superfamily YPN_1969 IPR036412 HAD-like superfamily YPN_1969 IPR023214 HAD superfamily YPN_1969 IPR018303 P-type ATPase, phosphorylation site YPN_1969 IPR001757 P-type ATPase YPN_1969 IPR006415 P-type ATPase, subfamily IIIB YPN_1969 IPR023299 P-type ATPase, cytoplasmic domain N YPN_1969 IPR004014 Cation-transporting P-type ATPase, N-terminal YPN_1969 IPR006068 Cation-transporting P-type ATPase, C-terminal YPN_1970 IPR003416 MgtC/SapB/SrpB/YhiD family YPN_1971 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPN_1971 IPR004090 Chemotaxis methyl-accepting receptor YPN_1971 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YPN_1971 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding YPN_1971 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPN_1971 IPR003660 HAMP domain YPN_1972 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPN_1972 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding YPN_1972 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPN_1972 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YPN_1972 IPR004090 Chemotaxis methyl-accepting receptor YPN_1972 IPR003660 HAMP domain YPN_1973 IPR019717 Dextransucrase DSRB YPN_1974 IPR002059 Cold-shock protein, DNA-binding YPN_1974 IPR019844 Cold-shock (CSD) domain YPN_1974 IPR011129 Cold shock domain YPN_1974 IPR012156 Cold shock, CspA YPN_1974 IPR012340 Nucleic acid-binding, OB-fold YPN_1975 IPR014718 Glycoside hydrolase-type carbohydrate-binding YPN_1975 IPR032312 Beta-galactosidase, domain 4 YPN_1975 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich YPN_1975 IPR006104 Glycosyl hydrolases family 2, sugar binding domain YPN_1975 IPR017853 Glycoside hydrolase superfamily YPN_1975 IPR013783 Immunoglobulin-like fold YPN_1975 IPR023230 Glycoside hydrolase, family 2, conserved site YPN_1975 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily YPN_1975 IPR011013 Galactose mutarotase-like domain superfamily YPN_1975 IPR006103 Glycoside hydrolase family 2, catalytic domain YPN_1975 IPR004199 Beta galactosidase small chain/ domain 5 YPN_1975 IPR023232 Glycoside hydrolase, family 2, active site YPN_1975 IPR008979 Galactose-binding-like domain superfamily YPN_1975 IPR006101 Glycoside hydrolase, family 2 YPN_1975 IPR023933 Glycoside hydrolase, family 2, beta-galactosidase YPN_1976 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YPN_1976 IPR014030 Beta-ketoacyl synthase, N-terminal YPN_1976 IPR036291 NAD(P)-binding domain superfamily YPN_1976 IPR011032 GroES-like superfamily YPN_1976 IPR014031 Beta-ketoacyl synthase, C-terminal YPN_1976 IPR013149 Alcohol dehydrogenase, C-terminal YPN_1976 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPN_1976 IPR036736 ACP-like superfamily YPN_1976 IPR014043 Acyl transferase YPN_1976 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPN_1976 IPR018201 Beta-ketoacyl synthase, active site YPN_1976 IPR020807 Polyketide synthase, dehydratase domain YPN_1976 IPR032821 Ketoacyl-synthetase, C-terminal extension YPN_1976 IPR013154 Alcohol dehydrogenase, N-terminal YPN_1976 IPR020843 Polyketide synthase, enoylreductase domain YPN_1976 IPR013968 Polyketide synthase, ketoreductase domain YPN_1976 IPR020806 Polyketide synthase, phosphopantetheine-binding domain YPN_1976 IPR009081 Phosphopantetheine binding ACP domain YPN_1976 IPR016039 Thiolase-like YPN_1976 IPR042104 Polyketide synthase, dehydratase domain superfamily YPN_1977 IPR019713 Inner membrane protein YlaC YPN_1979 IPR011008 Dimeric alpha-beta barrel YPN_1979 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1979 IPR019885 Transcription regulator HTH, AsnC-type, conserved site YPN_1979 IPR000485 AsnC-type HTH domain YPN_1979 IPR011991 ArsR-like helix-turn-helix domain YPN_1979 IPR019888 Transcription regulator AsnC-type YPN_1979 IPR036390 Winged helix DNA-binding domain superfamily YPN_1979 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YPN_1981 IPR017704 Putative selenium-binding protein YdfZ YPN_1982 IPR029033 Histidine phosphatase superfamily YPN_1982 IPR033379 Histidine acid phosphatase active site YPN_1982 IPR000560 Histidine phosphatase superfamily, clade-2 YPN_1985 IPR036390 Winged helix DNA-binding domain superfamily YPN_1985 IPR002577 Helix-turn-helix, HxlR type YPN_1985 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1986 IPR036291 NAD(P)-binding domain superfamily YPN_1986 IPR008030 NmrA-like domain YPN_1987 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPN_1987 IPR013655 PAS fold-3 YPN_1987 IPR000014 PAS domain YPN_1987 IPR035965 PAS domain superfamily YPN_1987 IPR004090 Chemotaxis methyl-accepting receptor YPN_1987 IPR001610 PAC motif YPN_1987 IPR003660 HAMP domain YPN_1989 IPR000843 LacI-type HTH domain YPN_1989 IPR028082 Periplasmic binding protein-like I YPN_1989 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPN_1989 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPN_1990 IPR024084 Isopropylmalate dehydrogenase-like domain YPN_1990 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site YPN_1990 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic YPN_1991 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site YPN_1991 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F YPN_1991 IPR006145 Pseudouridine synthase, RsuA/RluA YPN_1991 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPN_1991 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain YPN_1992 IPR000086 NUDIX hydrolase domain YPN_1992 IPR015797 NUDIX hydrolase-like domain superfamily YPN_1992 IPR020476 NUDIX hydrolase YPN_1992 IPR020084 NUDIX hydrolase, conserved site YPN_1992 IPR033713 Phosphatase NudJ YPN_1993 IPR004506 tRNA-specific 2-thiouridylase YPN_1993 IPR023382 Adenine nucleotide alpha hydrolase-like domains YPN_1993 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_1994 IPR035932 HflD-like superfamily YPN_1994 IPR007451 High frequency lysogenization protein HflD YPN_1995 IPR004769 Adenylosuccinate lyase YPN_1995 IPR008948 L-Aspartase-like YPN_1995 IPR013539 Adenylosuccinate lyase PurB, C-terminal YPN_1995 IPR024083 Fumarase/histidase, N-terminal YPN_1995 IPR020557 Fumarate lyase, conserved site YPN_1995 IPR000362 Fumarate lyase family YPN_1995 IPR022761 Fumarate lyase, N-terminal YPN_1997 IPR001789 Signal transduction response regulator, receiver domain YPN_1997 IPR039420 Transcriptional regulatory protein WalR-like YPN_1997 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_1997 IPR001867 OmpR/PhoB-type DNA-binding domain YPN_1997 IPR011006 CheY-like superfamily YPN_1998 IPR015014 PhoQ Sensor YPN_1998 IPR038429 PhoQ Sensor superfamily YPN_1998 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPN_1998 IPR003660 HAMP domain YPN_1998 IPR003594 Histidine kinase/HSP90-like ATPase YPN_1998 IPR005467 Histidine kinase domain YPN_1998 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_1998 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPN_1999 IPR039994 JmjC domain-containing YPN_1999 IPR003347 JmjC domain YPN_2000 IPR002933 Peptidase M20 YPN_2000 IPR011650 Peptidase M20, dimerisation domain YPN_2000 IPR010161 Peptidase M20B, tripeptide aminopeptidase YPN_2000 IPR036264 Bacterial exopeptidase dimerisation domain YPN_2000 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YPN_2001 IPR003000 Sirtuin family YPN_2001 IPR026590 Sirtuin family, catalytic core domain YPN_2001 IPR027546 Sirtuin, class III YPN_2001 IPR026591 Sirtuin, catalytic core small domain superfamily YPN_2001 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPN_2002 IPR000600 ROK family YPN_2002 IPR023505 N-acetyl-D-glucosamine kinase YPN_2003 IPR000600 ROK family YPN_2004 IPR025857 MacB-like periplasmic core domain YPN_2004 IPR011926 Lipoprotein-releasing system transmembrane protein LolE, gammaproteobacteria type YPN_2004 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E YPN_2004 IPR003838 ABC transporter permease protein domain YPN_2005 IPR003439 ABC transporter-like YPN_2005 IPR003593 AAA+ ATPase domain YPN_2005 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2005 IPR011924 Lipoprotein releasing system, ATP-binding protein YPN_2005 IPR015854 ABC transporter, lipoprotein release, LolD YPN_2005 IPR017871 ABC transporter, conserved site YPN_2006 IPR003838 ABC transporter permease protein domain YPN_2006 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E YPN_2006 IPR025857 MacB-like periplasmic core domain YPN_2007 IPR037235 TRCF-like, C-terminal domain YPN_2007 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2007 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPN_2007 IPR005118 Transcription-repair-coupling factor, C-terminal domain YPN_2007 IPR001650 Helicase, C-terminal YPN_2007 IPR011545 DEAD/DEAH box helicase domain YPN_2007 IPR003711 CarD-like/TRCF domain YPN_2007 IPR036101 CarD-like/TRCF domain superfamily YPN_2007 IPR004576 Transcription-repair coupling factor YPN_2007 IPR041471 UvrB, interaction domain YPN_2008 IPR008816 Glycine zipper 2TM domain YPN_2009 IPR001207 Transposase, mutator type YPN_2012 IPR023753 FAD/NAD(P)-binding domain YPN_2012 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_2013 IPR029058 Alpha/Beta hydrolase fold YPN_2013 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA YPN_2013 IPR022987 Uncharacterised protein family UPF0227 YPN_2014 IPR019800 Glycoside hydrolase, family 3, active site YPN_2014 IPR022956 Beta-hexosaminidase, bacterial YPN_2014 IPR017853 Glycoside hydrolase superfamily YPN_2014 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily YPN_2014 IPR001764 Glycoside hydrolase, family 3, N-terminal YPN_2015 IPR011009 Protein kinase-like domain superfamily YPN_2015 IPR014093 Thiamine kinase YPN_2015 IPR002575 Aminoglycoside phosphotransferase YPN_2016 IPR012640 Membrane lipoprotein, lipid attachment site YPN_2016 IPR014094 Penicillin-binding protein activator LpoB YPN_2017 IPR010824 Protein of unknown function DUF1425 YPN_2017 IPR038483 YcfL-like superfamily YPN_2018 IPR019808 Histidine triad, conserved site YPN_2018 IPR001310 Histidine triad (HIT) protein YPN_2018 IPR011146 HIT-like domain YPN_2018 IPR036265 HIT-like superfamily YPN_2019 IPR036291 NAD(P)-binding domain superfamily YPN_2019 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal YPN_2021 IPR003352 Phosphotransferase system, EIIC YPN_2021 IPR013013 Phosphotransferase system, EIIC component, type 1 YPN_2021 IPR001996 Phosphotransferase system, IIB component, type 1 YPN_2021 IPR011299 PTS system glucose-specific IIBC component YPN_2021 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component YPN_2021 IPR036878 Glucose permease domain IIB YPN_2021 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site YPN_2022 IPR032466 Metal-dependent hydrolase YPN_2022 IPR015991 Uncharacterised hydrolase TatD-type YPN_2022 IPR001130 TatD family YPN_2022 IPR018228 Deoxyribonuclease, TatD-related, conserved site YPN_2023 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2023 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YPN_2023 IPR015199 DNA polymerase III, delta subunit, C-terminal YPN_2023 IPR004622 DNA polymerase III, delta prime subunit YPN_2024 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2024 IPR039430 Thymidylate kinase-like domain YPN_2024 IPR018094 Thymidylate kinase YPN_2024 IPR018095 Thymidylate kinase, conserved site YPN_2025 IPR003770 Endolytic murein transglycosylase YPN_2026 IPR018300 Aminotransferase, class IV, conserved site YPN_2026 IPR001544 Aminotransferase class IV YPN_2026 IPR017824 Aminodeoxychorismate lyase, class IV YPN_2026 IPR036038 Aminotransferase-like, PLP-dependent enzymes YPN_2028 IPR014030 Beta-ketoacyl synthase, N-terminal YPN_2028 IPR016039 Thiolase-like YPN_2028 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPN_2028 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 YPN_2028 IPR018201 Beta-ketoacyl synthase, active site YPN_2028 IPR014031 Beta-ketoacyl synthase, C-terminal YPN_2028 IPR000794 Beta-ketoacyl synthase YPN_2029 IPR006162 Phosphopantetheine attachment site YPN_2029 IPR036736 ACP-like superfamily YPN_2029 IPR009081 Phosphopantetheine binding ACP domain YPN_2029 IPR003231 Acyl carrier protein (ACP) YPN_2030 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPN_2030 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase YPN_2030 IPR002347 Short-chain dehydrogenase/reductase SDR YPN_2030 IPR036291 NAD(P)-binding domain superfamily YPN_2031 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type YPN_2031 IPR024925 Malonyl CoA-acyl carrier protein transacylase YPN_2031 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPN_2031 IPR001227 Acyl transferase domain superfamily YPN_2031 IPR014043 Acyl transferase YPN_2031 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YPN_2032 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPN_2032 IPR016039 Thiolase-like YPN_2032 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 YPN_2032 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal YPN_2033 IPR003664 Fatty acid synthesis PlsX protein YPN_2033 IPR012281 Phospholipid biosynthesis protein, PlsX-like YPN_2034 IPR011332 Zinc-binding ribosomal protein YPN_2034 IPR002677 Ribosomal protein L32p YPN_2035 IPR039255 Large ribosomal RNA subunit accumulation protein YceD, bacteria YPN_2035 IPR003772 Large ribosomal RNA subunit accumulation protein YceD YPN_2036 IPR029001 Inosine triphosphate pyrophosphatase-like YPN_2036 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein YPN_2037 IPR006145 Pseudouridine synthase, RsuA/RluA YPN_2037 IPR036986 RNA-binding S4 domain superfamily YPN_2037 IPR002942 RNA-binding S4 domain YPN_2037 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPN_2037 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YPN_2037 IPR006225 Pseudouridine synthase, RluC/RluD YPN_2038 IPR003029 S1 domain YPN_2038 IPR004659 Ribonuclease E/G YPN_2038 IPR022967 RNA-binding domain, S1 YPN_2038 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G YPN_2038 IPR021968 Polyribonucleotide phosphorylase C-terminal YPN_2038 IPR012340 Nucleic acid-binding, OB-fold YPN_2038 IPR028878 Ribonuclease E YPN_2039 IPR001207 Transposase, mutator type YPN_2040 IPR025730 Biofilm regulator BssS YPN_2041 IPR010391 DNA damage-inducible protein DinI-like YPN_2041 IPR036687 DinI-like superfamily YPN_2042 IPR006680 Amidohydrolase-related YPN_2042 IPR004721 Dihydroorotase homodimeric type YPN_2042 IPR002195 Dihydroorotase, conserved site YPN_2042 IPR032466 Metal-dependent hydrolase YPN_2043 IPR007138 Antibiotic biosynthesis monooxygenase domain YPN_2043 IPR011008 Dimeric alpha-beta barrel YPN_2044 IPR001207 Transposase, mutator type YPN_2045 IPR006076 FAD dependent oxidoreductase YPN_2045 IPR023493 N-methyl-L-tryptophan oxidase MTOX YPN_2045 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_2046 IPR016032 Signal transduction response regulator, C-terminal effector YPN_2046 IPR000792 Transcription regulator LuxR, C-terminal YPN_2046 IPR001789 Signal transduction response regulator, receiver domain YPN_2047 IPR002549 Transmembrane protein TqsA-like YPN_2052 IPR018311 Autoinducer synthesis, conserved site YPN_2052 IPR001690 Autoinducer synthase YPN_2052 IPR016181 Acyl-CoA N-acyltransferase YPN_2053 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain YPN_2053 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_2053 IPR016032 Signal transduction response regulator, C-terminal effector YPN_2053 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily YPN_2053 IPR000792 Transcription regulator LuxR, C-terminal YPN_2054 IPR000847 Transcription regulator HTH, LysR YPN_2054 IPR036390 Winged helix DNA-binding domain superfamily YPN_2054 IPR005119 LysR, substrate-binding YPN_2054 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_2055 IPR036259 MFS transporter superfamily YPN_2055 IPR005829 Sugar transporter, conserved site YPN_2055 IPR020846 Major facilitator superfamily domain YPN_2055 IPR005828 Major facilitator, sugar transporter-like YPN_2057 IPR020471 Aldo/keto reductase YPN_2057 IPR023210 NADP-dependent oxidoreductase domain YPN_2057 IPR036812 NADP-dependent oxidoreductase domain superfamily YPN_2058 IPR013396 CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST YPN_2059 IPR013399 CRISPR-associated protein Csy3 YPN_2060 IPR013398 CRISPR-associated protein Csy2 YPN_2061 IPR013397 CRISPR-associated protein Csy1 YPN_2062 IPR038257 CRISPR-associated Cas3-type HD domain superfamily YPN_2062 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2062 IPR013395 Helicase Cas3, CRISPR-associated, Yersinia-type YPN_2062 IPR006483 CRISPR-associated Cas3-type HD domain YPN_2063 IPR019857 CRISPR-associated protein Cas1, YPEST subtype YPN_2063 IPR042211 CRISPR-associated endonuclease Cas1, N-terminal domain YPN_2063 IPR002729 CRISPR-associated protein Cas1 YPN_2063 IPR042206 CRISPR-associated endonuclease Cas1, C-terminal domain YPN_2064 IPR006685 Mechanosensitive ion channel MscS YPN_2064 IPR010920 LSM domain superfamily YPN_2064 IPR011066 Mechanosensitive ion channel MscS, C-terminal YPN_2064 IPR030192 Miniconductance mechanosensitive channel YbdG YPN_2068 IPR007184 Mannoside phosphorylase YPN_2068 IPR028583 4-O-beta-D-mannosyl-D-glucose phosphorylase YPN_2068 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily YPN_2069 IPR035906 MetI-like superfamily YPN_2069 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_2070 IPR035906 MetI-like superfamily YPN_2070 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_2072 IPR028082 Periplasmic binding protein-like I YPN_2072 IPR000843 LacI-type HTH domain YPN_2072 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPN_2073 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YPN_2073 IPR005843 Alpha-D-phosphohexomutase, C-terminal YPN_2073 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YPN_2073 IPR005841 Alpha-D-phosphohexomutase superfamily YPN_2073 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YPN_2073 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YPN_2073 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily YPN_2073 IPR016066 Alpha-D-phosphohexomutase, conserved site YPN_2074 IPR015855 ABC transporter, maltose/maltodextrin import, MalK YPN_2074 IPR003439 ABC transporter-like YPN_2074 IPR003593 AAA+ ATPase domain YPN_2074 IPR017871 ABC transporter, conserved site YPN_2074 IPR040582 MalK, OB fold domain YPN_2074 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2074 IPR008995 Molybdate/tungstate binding, C-terminal YPN_2077 IPR011050 Pectin lyase fold/virulence factor YPN_2077 IPR008638 Filamentous haemagglutinin, N-terminal YPN_2077 IPR008619 Filamentous haemagglutinin repeat YPN_2077 IPR006914 VENN motif-containing domain YPN_2077 IPR028190 Novel toxin 21 YPN_2077 IPR012334 Pectin lyase fold YPN_2077 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPN_2077 IPR038181 Novel toxin 21 superfamily YPN_2077 IPR025157 Hemagglutinin repeat YPN_2081 IPR012334 Pectin lyase fold YPN_2081 IPR011050 Pectin lyase fold/virulence factor YPN_2081 IPR008638 Filamentous haemagglutinin, N-terminal YPN_2081 IPR006914 VENN motif-containing domain YPN_2081 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPN_2081 IPR024973 ESPR domain YPN_2081 IPR025157 Hemagglutinin repeat YPN_2084 IPR025157 Hemagglutinin repeat YPN_2084 IPR012334 Pectin lyase fold YPN_2084 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPN_2084 IPR024973 ESPR domain YPN_2084 IPR011050 Pectin lyase fold/virulence factor YPN_2084 IPR006914 VENN motif-containing domain YPN_2084 IPR008638 Filamentous haemagglutinin, N-terminal YPN_2085 IPR027282 Two partner secretion pathway transporter YPN_2085 IPR013686 Polypeptide-transport-associated, ShlB-type YPN_2085 IPR005565 Haemolysin activator HlyB, C-terminal YPN_2085 IPR035251 ShlB, POTRA domain YPN_2085 IPR034746 POTRA domain YPN_2086 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPN_2086 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPN_2086 IPR017927 FAD-binding domain, ferredoxin reductase-type YPN_2086 IPR017938 Riboflavin synthase-like beta-barrel YPN_2086 IPR000951 Phthalate dioxygenase reductase YPN_2086 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPN_2086 IPR036010 2Fe-2S ferredoxin-like superfamily YPN_2086 IPR012675 Beta-grasp domain superfamily YPN_2086 IPR039003 Carnitine monooxygenase reductase subunit YPN_2086 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPN_2086 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPN_2087 IPR039004 Carnitine monooxygenase oxygenase subunit YPN_2087 IPR017941 Rieske [2Fe-2S] iron-sulphur domain YPN_2087 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily YPN_2087 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit YPN_2087 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain YPN_2087 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site YPN_2088 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily YPN_2088 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site YPN_2088 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain YPN_2088 IPR017941 Rieske [2Fe-2S] iron-sulphur domain YPN_2088 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit YPN_2088 IPR039004 Carnitine monooxygenase oxygenase subunit YPN_2089 IPR000060 BCCT transporter family YPN_2089 IPR018093 BCCT transporter, conserved site YPN_2090 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site YPN_2090 IPR011829 Tartrate dehydrogenase YPN_2090 IPR024084 Isopropylmalate dehydrogenase-like domain YPN_2091 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_2091 IPR000847 Transcription regulator HTH, LysR YPN_2091 IPR005119 LysR, substrate-binding YPN_2091 IPR036390 Winged helix DNA-binding domain superfamily YPN_2092 IPR028082 Periplasmic binding protein-like I YPN_2092 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPN_2092 IPR000843 LacI-type HTH domain YPN_2093 IPR001851 ABC transporter, permease YPN_2094 IPR003593 AAA+ ATPase domain YPN_2094 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2094 IPR015861 ABC transporter, ribose import, RbsA YPN_2094 IPR017871 ABC transporter, conserved site YPN_2094 IPR003439 ABC transporter-like YPN_2095 IPR025997 Periplasmic binding protein YPN_2095 IPR028082 Periplasmic binding protein-like I YPN_2096 IPR013154 Alcohol dehydrogenase, N-terminal YPN_2096 IPR011032 GroES-like superfamily YPN_2096 IPR036291 NAD(P)-binding domain superfamily YPN_2096 IPR020843 Polyketide synthase, enoylreductase domain YPN_2096 IPR013149 Alcohol dehydrogenase, C-terminal YPN_2100 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPN_2100 IPR000758 Virulence-related outer membrane protein YPN_2100 IPR027385 Outer membrane protein beta-barrel domain YPN_2102 IPR000620 EamA domain YPN_2104 IPR041698 Methyltransferase domain 25 YPN_2104 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_2104 IPR023506 Trans-aconitate 2-methyltransferase YPN_2104 IPR023149 Trans-aconitate 2-methyltransferase, C-terminal YPN_2105 IPR023188 DNA-binding protein Dps, conserved site YPN_2105 IPR009078 Ferritin-like superfamily YPN_2105 IPR008331 Ferritin/DPS protein domain YPN_2105 IPR012347 Ferritin-like YPN_2105 IPR023067 DNA protection during starvation protein, gammaproteobacteria YPN_2105 IPR002177 DNA-binding protein Dps YPN_2107 IPR018313 Solute-binding protein family 3, conserved site YPN_2107 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPN_2107 IPR001320 Ionotropic glutamate receptor YPN_2108 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPN_2108 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_2108 IPR035906 MetI-like superfamily YPN_2109 IPR017871 ABC transporter, conserved site YPN_2109 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2109 IPR003439 ABC transporter-like YPN_2109 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type YPN_2109 IPR003593 AAA+ ATPase domain YPN_2110 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPN_2110 IPR004090 Chemotaxis methyl-accepting receptor YPN_2110 IPR001610 PAC motif YPN_2110 IPR000014 PAS domain YPN_2110 IPR013655 PAS fold-3 YPN_2110 IPR035965 PAS domain superfamily YPN_2110 IPR000700 PAS-associated, C-terminal YPN_2111 IPR036397 Ribonuclease H superfamily YPN_2111 IPR001584 Integrase, catalytic core YPN_2111 IPR006120 Resolvase, HTH domain YPN_2111 IPR012337 Ribonuclease H-like superfamily YPN_2111 IPR017894 HTH domain, IS21 transposase-type YPN_2112 IPR001270 ClpA/B family YPN_2112 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_2112 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2112 IPR002611 IstB-like ATP-binding protein YPN_2112 IPR003593 AAA+ ATPase domain YPN_2114 IPR016909 Ribosomal RNA large subunit methyltransferase F YPN_2114 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_2114 IPR010286 METTL16/RlmF family YPN_2115 IPR010854 Domain of unknown function DUF1471 YPN_2115 IPR025543 Dodecin-like YPN_2115 IPR036275 YdgH-like superfamily YPN_2117 IPR017459 Glycosyl transferase family 3, N-terminal domain YPN_2117 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily YPN_2117 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily YPN_2118 IPR042099 AMP-dependent synthetase-like superfamily YPN_2118 IPR020845 AMP-binding, conserved site YPN_2118 IPR010192 2-succinylbenzoate--CoA ligase YPN_2118 IPR000873 AMP-dependent synthetase/ligase YPN_2118 IPR025110 AMP-binding enzyme, C-terminal domain YPN_2119 IPR029017 Enolase-like, N-terminal YPN_2119 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal YPN_2119 IPR036849 Enolase-like, C-terminal domain superfamily YPN_2119 IPR010196 o-Succinylbenzoate synthase, MenC type1 YPN_2119 IPR029065 Enolase C-terminal domain-like YPN_2120 IPR029045 ClpP/crotonase-like domain superfamily YPN_2120 IPR001753 Enoyl-CoA hydratase/isomerase YPN_2120 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site YPN_2120 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB YPN_2120 IPR014748 Enoyl-CoA hydratase, C-terminal YPN_2121 IPR000073 Alpha/beta hydrolase fold-1 YPN_2121 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase YPN_2121 IPR029058 Alpha/Beta hydrolase fold YPN_2122 IPR032264 Menaquinone biosynthesis protein MenD, middle domain YPN_2122 IPR029061 Thiamin diphosphate-binding fold YPN_2122 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase YPN_2122 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPN_2122 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPN_2123 IPR015890 Chorismate-utilising enzyme, C-terminal YPN_2123 IPR004561 Isochorismate synthase YPN_2123 IPR034681 Isochorismate synthase MenF YPN_2123 IPR005801 ADC synthase YPN_2125 IPR010279 Inner membrane protein YqjD/ElaB YPN_2128 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site YPN_2128 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase YPN_2128 IPR042096 Dihydroxy-acid dehydratase, C-terminal YPN_2128 IPR004786 6-phosphogluconate dehydratase YPN_2128 IPR037237 IlvD/EDD, N-terminal domain YPN_2129 IPR005624 Haem-degrading YPN_2129 IPR010371 Uncharacterised protein family UPF0303 YPN_2129 IPR038084 GlcG-like domain superfamily YPN_2130 IPR020846 Major facilitator superfamily domain YPN_2130 IPR036259 MFS transporter superfamily YPN_2130 IPR011701 Major facilitator superfamily YPN_2131 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPN_2131 IPR036291 NAD(P)-binding domain superfamily YPN_2131 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPN_2132 IPR028082 Periplasmic binding protein-like I YPN_2132 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPN_2132 IPR000843 LacI-type HTH domain YPN_2134 IPR002347 Short-chain dehydrogenase/reductase SDR YPN_2134 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPN_2134 IPR036291 NAD(P)-binding domain superfamily YPN_2135 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2135 IPR006001 Carbohydrate kinase, thermoresistant glucokinase YPN_2135 IPR031322 Shikimate kinase/gluconokinase YPN_2136 IPR037012 YhcH/YjgK/YiaL superfamily YPN_2136 IPR004375 YhcH/YjgK/YiaL family YPN_2138 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit YPN_2138 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 YPN_2139 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit YPN_2139 IPR003918 NADH:ubiquinone oxidoreductase YPN_2139 IPR010227 NADH-quinone oxidoreductase, chain M/4 YPN_2140 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit YPN_2140 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal YPN_2140 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup YPN_2140 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 YPN_2141 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K YPN_2141 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like YPN_2142 IPR042106 NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ YPN_2142 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 YPN_2143 IPR010226 NADH-quinone oxidoreductase, chain I YPN_2143 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPN_2143 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPN_2144 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H YPN_2144 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site YPN_2145 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site YPN_2145 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPN_2145 IPR006657 Molybdopterin dinucleotide-binding domain YPN_2145 IPR006656 Molybdopterin oxidoreductase YPN_2145 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPN_2145 IPR010228 NADH:ubiquinone oxidoreductase, subunit G YPN_2145 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding YPN_2145 IPR009010 Aspartate decarboxylase-like domain superfamily YPN_2145 IPR036010 2Fe-2S ferredoxin-like superfamily YPN_2146 IPR011537 NADH ubiquinone oxidoreductase, F subunit YPN_2146 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site YPN_2146 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily YPN_2146 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain YPN_2146 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain YPN_2146 IPR019554 Soluble ligand binding domain YPN_2146 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily YPN_2147 IPR036249 Thioredoxin-like superfamily YPN_2147 IPR002023 NADH-quinone oxidoreductase subunit E-like YPN_2147 IPR041921 NADH-quinone oxidoreductase subunit E, N-terminal YPN_2147 IPR042128 NuoE domain YPN_2148 IPR001135 NADH-quinone oxidoreductase, subunit D YPN_2148 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site YPN_2148 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H YPN_2148 IPR029014 [NiFe]-hydrogenase, large subunit YPN_2148 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily YPN_2148 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily YPN_2148 IPR010218 NADH dehydrogenase, subunit C YPN_2148 IPR023062 NADH dehydrogenase, subunit CD YPN_2148 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit YPN_2149 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit YPN_2149 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit YPN_2150 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily YPN_2150 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid YPN_2150 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 YPN_2151 IPR000847 Transcription regulator HTH, LysR YPN_2151 IPR005119 LysR, substrate-binding YPN_2151 IPR036390 Winged helix DNA-binding domain superfamily YPN_2151 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_2152 IPR004839 Aminotransferase, class I/classII YPN_2152 IPR015424 Pyridoxal phosphate-dependent transferase YPN_2152 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_2152 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_2153 IPR022971 5'-deoxynucleotidase YfbR YPN_2153 IPR039356 Metal-dependent nucleoside 5'-monophosphatase YPN_2153 IPR003607 HD/PDEase domain YPN_2154 IPR004680 Citrate transporter-like domain YPN_2154 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily YPN_2154 IPR031312 Sodium/sulphate symporter, conserved site YPN_2154 IPR006037 Regulator of K+ conductance, C-terminal YPN_2155 IPR006439 HAD hydrolase, subfamily IA YPN_2155 IPR036412 HAD-like superfamily YPN_2155 IPR041492 Haloacid dehalogenase-like hydrolase YPN_2155 IPR023214 HAD superfamily YPN_2155 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPN_2156 IPR023145 YfbU, helix-hairpin domain superfamily YPN_2156 IPR023146 YfbU, alpha-helical bundle domain superfamily YPN_2156 IPR005587 Uncharacterised protein family UPF0304, YfbU YPN_2157 IPR007334 Uncharacterised protein family UPF0208 YPN_2158 IPR000890 Aliphatic acid kinase, short-chain YPN_2158 IPR023865 Aliphatic acid kinase, short-chain, conserved site YPN_2158 IPR004372 Acetate/propionate kinase YPN_2159 IPR042112 Phosphate acetyltransferase, domain 2 YPN_2159 IPR016475 Phosphate acetyltransferase, bacteria YPN_2159 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily YPN_2159 IPR004614 Phosphate acetyltransferase YPN_2159 IPR042113 Phosphate acetyltransferase, domain 1 YPN_2159 IPR010766 DRTGG YPN_2159 IPR002505 Phosphate acetyl/butaryl transferase YPN_2159 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2160 IPR028082 Periplasmic binding protein-like I YPN_2160 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPN_2160 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPN_2160 IPR000843 LacI-type HTH domain YPN_2161 IPR002178 PTS EIIA type-2 domain YPN_2161 IPR016152 Phosphotransferase/anion transporter YPN_2163 IPR001207 Transposase, mutator type YPN_2164 IPR001207 Transposase, mutator type YPN_2165 IPR004703 Phosphotransferase system, sugar-specific permease component YPN_2166 IPR024195 NUDIX hydrolase, YfcD, predicted YPN_2166 IPR000086 NUDIX hydrolase domain YPN_2166 IPR015797 NUDIX hydrolase-like domain superfamily YPN_2167 IPR041802 YfcE-like, metallophosphatase domain YPN_2167 IPR000979 Phosphodiesterase MJ0936/Vps29 YPN_2167 IPR024654 Calcineurin-like phosphoesterase domain, lpxH-type YPN_2167 IPR029052 Metallo-dependent phosphatase-like YPN_2167 IPR020935 Phosphodiesterase YfcE, conserved site YPN_2169 IPR013549 Domain of unknown function DUF1731 YPN_2169 IPR001509 NAD-dependent epimerase/dehydratase YPN_2169 IPR010099 Epimerase family protein SDR39U1 YPN_2169 IPR036291 NAD(P)-binding domain superfamily YPN_2170 IPR003593 AAA+ ATPase domain YPN_2170 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type YPN_2170 IPR003439 ABC transporter-like YPN_2170 IPR017871 ABC transporter, conserved site YPN_2170 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2171 IPR035906 MetI-like superfamily YPN_2171 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPN_2171 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_2172 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPN_2172 IPR035906 MetI-like superfamily YPN_2172 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_2172 IPR030199 Histidine transport system permease protein HisQ YPN_2173 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPN_2173 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YPN_2173 IPR018313 Solute-binding protein family 3, conserved site YPN_2174 IPR036551 Flavin prenyltransferase-like YPN_2174 IPR004507 Flavin prenyltransferase UbiX-like YPN_2174 IPR003382 Flavoprotein YPN_2175 IPR000836 Phosphoribosyltransferase domain YPN_2175 IPR029057 Phosphoribosyltransferase-like YPN_2175 IPR005854 Amidophosphoribosyltransferase YPN_2175 IPR029055 Nucleophile aminohydrolases, N-terminal YPN_2175 IPR017932 Glutamine amidotransferase type 2 domain YPN_2175 IPR035584 Amidophosphoribosyltransferase, N-terminal YPN_2176 IPR003825 Colicin V production, CvpA YPN_2177 IPR036680 Sporulation-like domain superfamily YPN_2177 IPR032898 Cell division protein DedD YPN_2177 IPR007730 Sporulation-like domain YPN_2178 IPR001645 Folylpolyglutamate synthetase YPN_2178 IPR018109 Folylpolyglutamate synthetase, conserved site YPN_2178 IPR036565 Mur-like, catalytic domain superfamily YPN_2178 IPR004101 Mur ligase, C-terminal YPN_2178 IPR036615 Mur ligase, C-terminal domain superfamily YPN_2178 IPR013221 Mur ligase, central YPN_2179 IPR041010 Acetyl-coA carboxylase zinc finger domain YPN_2179 IPR029045 ClpP/crotonase-like domain superfamily YPN_2179 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal YPN_2179 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit YPN_2179 IPR034733 Acetyl-CoA carboxylase YPN_2180 IPR032818 DedA family YPN_2180 IPR032816 SNARE associated Golgi protein YPN_2181 IPR001406 Pseudouridine synthase I, TruA YPN_2181 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain YPN_2181 IPR020095 Pseudouridine synthase I, TruA, C-terminal YPN_2181 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPN_2182 IPR036291 NAD(P)-binding domain superfamily YPN_2182 IPR000534 Semialdehyde dehydrogenase, NAD-binding YPN_2182 IPR012280 Semialdehyde dehydrogenase, dimerisation domain YPN_2183 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPN_2183 IPR020921 Erythronate-4-phosphate dehydrogenase YPN_2183 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPN_2183 IPR038251 PdxB, dimerisation domain superfamily YPN_2183 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPN_2183 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain YPN_2183 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPN_2183 IPR036291 NAD(P)-binding domain superfamily YPN_2185 IPR000620 EamA domain YPN_2186 IPR023597 Flagellar regulator Flk YPN_2187 IPR008966 Adhesion domain superfamily YPN_2187 IPR036937 Fimbrial-type adhesion domain superfamily YPN_2187 IPR000259 Fimbrial-type adhesion domain YPN_2188 IPR001920 Asp/Glu racemase YPN_2188 IPR004380 Aspartate racemase YPN_2188 IPR033134 Asp/Glu racemase, active site 2 YPN_2188 IPR015942 Asp/Glu/hydantoin racemase YPN_2188 IPR018187 Asp/Glu racemase, active site 1 YPN_2189 IPR016039 Thiolase-like YPN_2189 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPN_2189 IPR014030 Beta-ketoacyl synthase, N-terminal YPN_2189 IPR014031 Beta-ketoacyl synthase, C-terminal YPN_2189 IPR000794 Beta-ketoacyl synthase YPN_2189 IPR018201 Beta-ketoacyl synthase, active site YPN_2190 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal YPN_2190 IPR006076 FAD dependent oxidoreductase YPN_2190 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_2190 IPR008471 MnmC-like methyltransferase YPN_2190 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_2190 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC YPN_2191 IPR014987 Uncharacterised protein family YfcL YPN_2192 IPR007411 Elongation factor P hydroxylase YPN_2193 IPR002781 Transmembrane protein TauE-like YPN_2194 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily YPN_2194 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase YPN_2195 IPR035904 Chorismate synthase AroC superfamily YPN_2195 IPR020541 Chorismate synthase, conserved site YPN_2195 IPR000453 Chorismate synthase YPN_2196 IPR004556 Methyltransferase HemK-like YPN_2196 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPN_2196 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase YPN_2196 IPR007848 Methyltransferase small domain YPN_2196 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_2197 IPR002625 Smr domain YPN_2197 IPR036063 Smr domain superfamily YPN_2197 IPR022990 Uncharacterised protein family UPF0115 YPN_2199 IPR029033 Histidine phosphatase superfamily YPN_2199 IPR013078 Histidine phosphatase superfamily, clade-1 YPN_2199 IPR004449 Phosphohistidine phosphatase SixA YPN_2200 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPN_2200 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal YPN_2200 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding YPN_2200 IPR029045 ClpP/crotonase-like domain superfamily YPN_2200 IPR001753 Enoyl-CoA hydratase/isomerase YPN_2200 IPR012802 Fatty oxidation complex, alpha subunit FadJ YPN_2200 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site YPN_2200 IPR036291 NAD(P)-binding domain superfamily YPN_2201 IPR020615 Thiolase, acyl-enzyme intermediate active site YPN_2201 IPR016039 Thiolase-like YPN_2201 IPR012806 Acetyl-CoA C-acyltransferase FadI YPN_2201 IPR002155 Thiolase YPN_2201 IPR020617 Thiolase, C-terminal YPN_2201 IPR020613 Thiolase, conserved site YPN_2201 IPR020610 Thiolase, active site YPN_2201 IPR020616 Thiolase, N-terminal YPN_2202 IPR035571 UPF0234-like, C-terminal YPN_2202 IPR005272 Conserved hypothetical protein CHP00743 YPN_2203 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) YPN_2203 IPR042117 OMPP1/FadL/TodX superfamily YPN_2204 IPR007428 MlaA lipoprotein YPN_2205 IPR011990 Tetratricopeptide-like helical domain superfamily YPN_2205 IPR013026 Tetratricopeptide repeat-containing domain YPN_2205 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily YPN_2205 IPR005616 CcmH/CycL/Ccl2/NrfF family YPN_2205 IPR019734 Tetratricopeptide repeat YPN_2206 IPR005616 CcmH/CycL/Ccl2/NrfF family YPN_2206 IPR019734 Tetratricopeptide repeat YPN_2206 IPR011990 Tetratricopeptide-like helical domain superfamily YPN_2206 IPR013026 Tetratricopeptide repeat-containing domain YPN_2206 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily YPN_2207 IPR013766 Thioredoxin domain YPN_2207 IPR017937 Thioredoxin, conserved site YPN_2207 IPR036249 Thioredoxin-like superfamily YPN_2207 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE YPN_2207 IPR013740 Redoxin YPN_2208 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal YPN_2208 IPR003567 Cytochrome c-type biogenesis protein YPN_2208 IPR002541 Cytochrome c assembly protein YPN_2208 IPR003568 Cytochrome c-type biogenesis protein CcmF YPN_2209 IPR036127 CcmE-like superfamily YPN_2209 IPR004329 CcmE/CycJ protein YPN_2210 IPR007078 Haem exporter protein D (CcmD) YPN_2211 IPR002541 Cytochrome c assembly protein YPN_2211 IPR003557 Cytochrome c-type biogenesis protein CcmC YPN_2212 IPR003544 Cytochrome c-type biogenesis protein CcmB YPN_2212 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria YPN_2213 IPR017871 ABC transporter, conserved site YPN_2213 IPR005895 ABC transporter, haem export, CcmA YPN_2213 IPR003593 AAA+ ATPase domain YPN_2213 IPR003439 ABC transporter-like YPN_2213 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2215 IPR023353 LemA-like domain superfamily YPN_2215 IPR007156 LemA YPN_2217 IPR013987 PhnA protein, N-terminal YPN_2217 IPR013988 PhnA protein, C-terminal YPN_2217 IPR004624 PhnA protein YPN_2222 IPR037026 Vgr protein, OB-fold domain superfamily YPN_2222 IPR006531 Gp5 N-terminal YPN_2222 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPN_2222 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPN_2225 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2225 IPR002611 IstB-like ATP-binding protein YPN_2225 IPR001270 ClpA/B family YPN_2225 IPR003593 AAA+ ATPase domain YPN_2225 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_2226 IPR017894 HTH domain, IS21 transposase-type YPN_2226 IPR036397 Ribonuclease H superfamily YPN_2226 IPR012337 Ribonuclease H-like superfamily YPN_2226 IPR006120 Resolvase, HTH domain YPN_2226 IPR001584 Integrase, catalytic core YPN_2229 IPR015855 ABC transporter, maltose/maltodextrin import, MalK YPN_2229 IPR017871 ABC transporter, conserved site YPN_2229 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2229 IPR003593 AAA+ ATPase domain YPN_2229 IPR008995 Molybdate/tungstate binding, C-terminal YPN_2229 IPR003439 ABC transporter-like YPN_2229 IPR013611 Transport-associated OB, type 2 YPN_2230 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_2230 IPR035906 MetI-like superfamily YPN_2231 IPR035906 MetI-like superfamily YPN_2231 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_2233 IPR000683 Oxidoreductase, N-terminal YPN_2233 IPR036291 NAD(P)-binding domain superfamily YPN_2233 IPR023794 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase YPN_2233 IPR004104 Oxidoreductase, C-terminal YPN_2240 IPR001207 Transposase, mutator type YPN_2241 IPR001207 Transposase, mutator type YPN_2252 IPR036624 Hcp1-like superfamily YPN_2252 IPR008514 Type VI secretion system effector, Hcp YPN_2257 IPR023762 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, bacterial YPN_2257 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YPN_2257 IPR000462 CDP-alcohol phosphatidyltransferase YPN_2258 IPR010994 RuvA domain 2-like YPN_2258 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 YPN_2258 IPR035901 GIY-YIG endonuclease superfamily YPN_2258 IPR000305 GIY-YIG endonuclease YPN_2258 IPR004791 UvrABC system, subunit C YPN_2258 IPR036876 UVR domain superfamily YPN_2258 IPR001162 UvrC family homology region YPN_2258 IPR001943 UVR domain YPN_2258 IPR038476 UvrC homology region 2 superfamily YPN_2259 IPR011006 CheY-like superfamily YPN_2259 IPR016032 Signal transduction response regulator, C-terminal effector YPN_2259 IPR001789 Signal transduction response regulator, receiver domain YPN_2259 IPR000792 Transcription regulator LuxR, C-terminal YPN_2261 IPR009707 Membrane protein GlpM/YdgC YPN_2263 IPR027385 Outer membrane protein beta-barrel domain YPN_2263 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPN_2263 IPR000758 Virulence-related outer membrane protein YPN_2264 IPR004841 Amino acid permease/ SLC12A domain YPN_2264 IPR004840 Amino acid permease, conserved site YPN_2265 IPR019936 Mutatrotase, YjhT-like YPN_2265 IPR015915 Kelch-type beta propeller YPN_2265 IPR006652 Kelch repeat type 1 YPN_2266 IPR010089 Flavoprotein WrbA-like YPN_2266 IPR029039 Flavoprotein-like superfamily YPN_2266 IPR037513 NAD(P)H dehydrogenase (quinone), prokaryotic YPN_2266 IPR008254 Flavodoxin/nitric oxide synthase YPN_2266 IPR005025 NADPH-dependent FMN reductase-like YPN_2267 IPR006313 Deferrochelatase/peroxidase EfeB YPN_2267 IPR011008 Dimeric alpha-beta barrel YPN_2267 IPR006311 Twin-arginine translocation pathway, signal sequence YPN_2267 IPR006314 Dyp-type peroxidase YPN_2268 IPR038352 Imelysin-like domain superfamily YPN_2268 IPR034981 EfeO/Algp7, imelysin-like domain YPN_2268 IPR018976 Imelysin-like domain YPN_2268 IPR028096 EfeO-type cupredoxin-like domain YPN_2268 IPR008972 Cupredoxin YPN_2269 IPR004923 Iron permease FTR1/Fip1/EfeU YPN_2270 IPR011851 Sodium/proline symporter YPN_2270 IPR018212 Sodium/solute symporter, conserved site YPN_2270 IPR038377 Sodium/glucose symporter superfamily YPN_2270 IPR001734 Sodium/solute symporter YPN_2272 IPR016162 Aldehyde dehydrogenase, N-terminal YPN_2272 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 YPN_2272 IPR016160 Aldehyde dehydrogenase, cysteine active site YPN_2272 IPR024090 Proline dehydrogenase PutA, domain I YPN_2272 IPR025703 Bifunctional protein PutA YPN_2272 IPR024089 Proline dehydrogenase PutA, domain I/II YPN_2272 IPR024082 Proline dehydrogenase PutA, domain II YPN_2272 IPR013321 Arc-type ribbon-helix-helix YPN_2272 IPR015590 Aldehyde dehydrogenase domain YPN_2272 IPR016161 Aldehyde/histidinol dehydrogenase YPN_2272 IPR016163 Aldehyde dehydrogenase, C-terminal YPN_2272 IPR002872 Proline dehydrogenase domain YPN_2272 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPN_2272 IPR041349 Proline utilization A proline dehydrogenase N-terminal domain YPN_2272 IPR010985 Ribbon-helix-helix YPN_2272 IPR029041 FAD-linked oxidoreductase-like YPN_2278 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPN_2278 IPR001926 Pyridoxal-phosphate dependent enzyme YPN_2278 IPR023702 D-cysteine desulphhydrase, bacterial YPN_2278 IPR005966 D-cysteine desulfhydrase YPN_2278 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase YPN_2279 IPR022523 Flagellar regulator, FliZ YPN_2279 IPR004107 Integrase, SAM-like, N-terminal YPN_2280 IPR000943 RNA polymerase sigma-70 YPN_2280 IPR013325 RNA polymerase sigma factor, region 2 YPN_2280 IPR012845 RNA polymerase sigma factor, FliA/WhiG YPN_2280 IPR014284 RNA polymerase sigma-70 like domain YPN_2280 IPR028617 RNA polymerase sigma factor FliA YPN_2280 IPR007630 RNA polymerase sigma-70 region 4 YPN_2280 IPR007624 RNA polymerase sigma-70 region 3 YPN_2280 IPR007627 RNA polymerase sigma-70 region 2 YPN_2280 IPR013324 RNA polymerase sigma factor, region 3/4-like YPN_2281 IPR001029 Flagellin, D0/D1 domain YPN_2281 IPR014981 Flagellin D3 YPN_2281 IPR001492 Flagellin YPN_2282 IPR040026 Flagellar hook-associated protein 2 YPN_2282 IPR003481 Flagellar hook-associated protein 2, N-terminal YPN_2282 IPR010809 Flagellar hook-associated protein 2, C-terminal YPN_2282 IPR010810 Flagellin hook, IN motif YPN_2283 IPR003713 Flagellar protein FliS YPN_2283 IPR036584 Flagellar protein FliS superfamily YPN_2284 IPR008622 Flagellar protein FliT YPN_2285 IPR018060 DNA binding HTH domain, AraC-type YPN_2285 IPR018062 HTH domain AraC-type, conserved site YPN_2285 IPR020449 Transcription regulator HTH, AraC- type YPN_2285 IPR009057 Homeobox-like domain superfamily YPN_2287 IPR003660 HAMP domain YPN_2287 IPR029787 Nucleotide cyclase YPN_2287 IPR029151 Periplasmic sensor-like domain superfamily YPN_2287 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase YPN_2287 IPR033479 Double Cache domain 1 YPN_2288 IPR037522 HD-GYP domain YPN_2288 IPR003607 HD/PDEase domain YPN_2288 IPR006675 HDIG domain YPN_2288 IPR006674 HD domain YPN_2289 IPR003265 HhH-GPD domain YPN_2289 IPR011257 DNA glycosylase YPN_2292 IPR001624 Flagellar hook-basal body complex protein FliE YPN_2293 IPR000067 Flagellar M-ring protein FliF YPN_2293 IPR013556 Flagellar M-ring C-terminal YPN_2293 IPR006182 Secretory protein YscJ/FliF YPN_2294 IPR032779 Flagellar motor switch protein FliG, middle domain YPN_2294 IPR000090 Flagellar motor switch protein FliG YPN_2294 IPR011002 Flagellar motor switch protein FliG, alpha-helical YPN_2294 IPR023087 Flagellar motor switch protein FliG, C-terminal YPN_2294 IPR028263 Flagellar motor switch protein FliG, N-terminal domain YPN_2295 IPR000563 Flagellar assembly protein FliH YPN_2295 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE YPN_2296 IPR020005 Flagellar export ATPase FliI, clade 1 YPN_2296 IPR032463 ATPase, type III secretion system, FliI YPN_2296 IPR005714 ATPase, type III secretion system, FliI/YscN YPN_2296 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPN_2296 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2296 IPR040627 T3SS EscN ATPase, C-terminal YPN_2296 IPR003593 AAA+ ATPase domain YPN_2296 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPN_2297 IPR012823 Flagellar export FliJ YPN_2297 IPR018006 Flagellar FliJ, proteobacteria YPN_2298 IPR038610 FliK-like, C-terminal domain superfamily YPN_2298 IPR021136 Flagellar hook-length control protein-like, C-terminal YPN_2298 IPR001635 Flagellar hook-length control protein FliK YPN_2299 IPR005503 Flagellar basal body-associated protein FliL YPN_2300 IPR036429 SpoA-like superfamily YPN_2300 IPR001543 Surface presentation of antigen (SpoA) YPN_2300 IPR028976 CheC-like superfamily YPN_2300 IPR001689 Flagellar motor switch protein FliM YPN_2301 IPR036429 SpoA-like superfamily YPN_2301 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb YPN_2301 IPR031576 Flagellar motor switch protein FliN, N-terminal YPN_2301 IPR012826 Flagellar motor switch FliN YPN_2301 IPR001543 Surface presentation of antigen (SpoA) YPN_2302 IPR022781 Flagellar biosynthesis protein, FliO YPN_2303 IPR005838 Type III secretion system inner membrane P protein YPN_2303 IPR005837 Flagellar transport protein FliP YPN_2304 IPR006305 Flagellar biosynthesis protein FliQ YPN_2304 IPR002191 Bacterial export protein family 3 YPN_2305 IPR006303 Flagellar biosynthesis protein FliR YPN_2305 IPR002010 Type III secretion system inner membrane R protein YPN_2308 IPR002139 Ribokinase/fructokinase YPN_2308 IPR029056 Ribokinase-like YPN_2308 IPR011611 Carbohydrate kinase PfkB YPN_2308 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPN_2308 IPR030877 Sulfofructose kinase YPN_2309 IPR001851 ABC transporter, permease YPN_2310 IPR017871 ABC transporter, conserved site YPN_2310 IPR015861 ABC transporter, ribose import, RbsA YPN_2310 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2310 IPR003439 ABC transporter-like YPN_2310 IPR003593 AAA+ ATPase domain YPN_2311 IPR030159 Autoinducer 2 ABC transporter, substrate-binding protein LsrB YPN_2311 IPR025997 Periplasmic binding protein YPN_2311 IPR028082 Periplasmic binding protein-like I YPN_2312 IPR001851 ABC transporter, permease YPN_2313 IPR002347 Short-chain dehydrogenase/reductase SDR YPN_2313 IPR036291 NAD(P)-binding domain superfamily YPN_2313 IPR013454 Bifunctional rhamnulose-1-phosphate aldolase/alcohol dehydrogenase YPN_2313 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPN_2313 IPR001303 Class II aldolase/adducin N-terminal YPN_2314 IPR013324 RNA polymerase sigma factor, region 3/4-like YPN_2314 IPR007324 Sugar-binding domain, putative YPN_2314 IPR037171 NagB/RpiA transferase-like YPN_2314 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_2315 IPR013384 Flagellar hook-associated protein 3 YPN_2315 IPR001029 Flagellin, D0/D1 domain YPN_2316 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPN_2316 IPR001444 Flagellar basal body rod protein, N-terminal YPN_2316 IPR002371 Flagellar hook-associated protein 1 YPN_2317 IPR013377 Peptidoglycan hydrolase FlgJ YPN_2317 IPR019301 Flagellar protein FlgJ, N-terminal YPN_2317 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain YPN_2318 IPR001782 Flagellar P-ring protein YPN_2319 IPR000527 Flagellar L-ring protein YPN_2320 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPN_2320 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPN_2320 IPR001444 Flagellar basal body rod protein, N-terminal YPN_2320 IPR012834 Flagellar basal-body rod FlgG YPN_2320 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPN_2320 IPR019776 Flagellar basal body rod protein, conserved site YPN_2321 IPR019776 Flagellar basal body rod protein, conserved site YPN_2321 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPN_2321 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPN_2321 IPR001444 Flagellar basal body rod protein, N-terminal YPN_2321 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPN_2322 IPR037058 Flagellar hook protein FlgE superfamily YPN_2322 IPR019776 Flagellar basal body rod protein, conserved site YPN_2322 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPN_2322 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPN_2322 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPN_2322 IPR001444 Flagellar basal body rod protein, N-terminal YPN_2322 IPR011491 Flagellar hook protein FlgE YPN_2323 IPR025963 FlgD Tudor-like domain YPN_2323 IPR005648 Flagellar hook capping protein YPN_2323 IPR025965 FlgD Ig-like domain YPN_2324 IPR006299 Flagellar basal-body rod protein FlgC YPN_2324 IPR019776 Flagellar basal body rod protein, conserved site YPN_2324 IPR001444 Flagellar basal body rod protein, N-terminal YPN_2324 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPN_2325 IPR001444 Flagellar basal body rod protein, N-terminal YPN_2325 IPR019776 Flagellar basal body rod protein, conserved site YPN_2325 IPR006300 Flagellar basal-body rod protein FlgB YPN_2326 IPR013974 SAF domain YPN_2326 IPR039246 Flagellar protein FlgA YPN_2326 IPR041231 FlgA, N-terminal YPN_2326 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal YPN_2327 IPR007412 Anti-sigma-28 factor, FlgM YPN_2327 IPR031316 Anti-sigma-28 factor FlgM, C-terminal YPN_2327 IPR035890 Anti-sigma-28 factor FlgM superfamily YPN_2328 IPR036679 FlgN-like superfamily YPN_2328 IPR007809 FlgN-like protein YPN_2329 IPR016186 C-type lectin-like/link domain superfamily YPN_2329 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPN_2329 IPR024519 Inverse autotransporter, beta-domain YPN_2329 IPR038177 Inverse autotransporter, beta-domain superfamily YPN_2329 IPR013783 Immunoglobulin-like fold YPN_2329 IPR003535 Intimin/invasin bacterial adhesion mediator protein YPN_2329 IPR013117 Intimin, C-terminal YPN_2329 IPR015217 Invasin, domain 3 YPN_2329 IPR008964 Invasin/intimin cell-adhesion fragments YPN_2329 IPR016187 C-type lectin fold YPN_2331 IPR015217 Invasin, domain 3 YPN_2331 IPR008964 Invasin/intimin cell-adhesion fragments YPN_2331 IPR013117 Intimin, C-terminal YPN_2331 IPR024519 Inverse autotransporter, beta-domain YPN_2331 IPR003535 Intimin/invasin bacterial adhesion mediator protein YPN_2331 IPR013783 Immunoglobulin-like fold YPN_2331 IPR038177 Inverse autotransporter, beta-domain superfamily YPN_2331 IPR016187 C-type lectin fold YPN_2331 IPR016186 C-type lectin-like/link domain superfamily YPN_2331 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPN_2332 IPR009420 Flagellar protein FlhE YPN_2333 IPR006301 Flagellar biosynthesis protein FlhA YPN_2333 IPR025505 FHIPEP conserved site YPN_2333 IPR042194 FHIPEP, domain 1 YPN_2333 IPR001712 Type III secretion system FHIPEP YPN_2333 IPR042196 FHIPEP, domain 4 YPN_2333 IPR042193 FHIPEP, domain 3 YPN_2334 IPR006135 Type III secretion system substrate exporter YPN_2334 IPR006136 Flagellar biosynthetic protein FlhB YPN_2334 IPR029025 Type III secretion system substrate exporter, C-terminal YPN_2337 IPR019648 Protein of unknown function DUF2511 YPN_2339 IPR007348 CopC domain YPN_2339 IPR032694 Copper transport protein C/D YPN_2339 IPR014756 Immunoglobulin E-set YPN_2340 IPR001519 Ferritin YPN_2340 IPR012347 Ferritin-like YPN_2340 IPR009040 Ferritin-like diiron domain YPN_2340 IPR009078 Ferritin-like superfamily YPN_2340 IPR008331 Ferritin/DPS protein domain YPN_2340 IPR041719 Ferritin, prokaryotic-type YPN_2341 IPR009052 DNA polymerase III-theta, bacterial YPN_2341 IPR036745 DNA polymerase III-theta superfamily YPN_2342 IPR005944 Proline iminopeptidase YPN_2342 IPR000073 Alpha/beta hydrolase fold-1 YPN_2342 IPR002410 Peptidase S33 YPN_2342 IPR029058 Alpha/Beta hydrolase fold YPN_2343 IPR002470 Peptidase S9A, prolyl oligopeptidase YPN_2343 IPR029058 Alpha/Beta hydrolase fold YPN_2343 IPR002471 Peptidase S9, serine active site YPN_2343 IPR023302 Peptidase S9A, N-terminal domain YPN_2343 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain YPN_2344 IPR025603 YebF/Colicin-M immunity protein YPN_2344 IPR020236 Uncharacterised protein family YebF YPN_2344 IPR038703 YebF/Cmi superfamily YPN_2346 IPR038627 YebG-like superfamily YPN_2346 IPR009813 Uncharacterised protein family YebG YPN_2347 IPR001650 Helicase, C-terminal YPN_2347 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2347 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain YPN_2347 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPN_2347 IPR011545 DEAD/DEAH box helicase domain YPN_2347 IPR014014 RNA helicase, DEAD-box type, Q motif YPN_2347 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily YPN_2347 IPR028619 ATP-dependent RNA helicase DbpA YPN_2347 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPN_2348 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase YPN_2348 IPR011054 Rudiment single hybrid motif YPN_2348 IPR013815 ATP-grasp fold, subdomain 1 YPN_2348 IPR016185 Pre-ATP-grasp domain superfamily YPN_2348 IPR011761 ATP-grasp fold YPN_2348 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YPN_2349 IPR005371 Uncharacterised protein family UPF0181 YPN_2350 IPR015890 Chorismate-utilising enzyme, C-terminal YPN_2350 IPR006805 Anthranilate synthase component I, N-terminal YPN_2350 IPR019999 Anthranilate synthase component I-like YPN_2350 IPR005801 ADC synthase YPN_2350 IPR005802 Aminodeoxychorismate synthase, component I YPN_2351 IPR000059 NUDIX hydrolase, NudL, conserved site YPN_2351 IPR015797 NUDIX hydrolase-like domain superfamily YPN_2351 IPR000086 NUDIX hydrolase domain YPN_2351 IPR023735 Uncharacterised nudix hydrolase NudL YPN_2352 IPR029009 Allosteric substrate binding domain superfamily YPN_2352 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form YPN_2352 IPR005130 Serine dehydratase-like, alpha subunit YPN_2352 IPR005131 Serine dehydratase beta chain YPN_2353 IPR012349 FMN-binding split barrel YPN_2353 IPR002563 Flavin reductase like domain YPN_2353 IPR011982 4-hydroxyphenylacetate 3-monooxygenase, reductase component YPN_2354 IPR024674 HpaB/PvcC/4-BUDH N-terminal YPN_2354 IPR012688 4-HPA 3-monooxygenase large component, gammaproteobacteria YPN_2354 IPR024719 HpaB/PvcC/4-BUDH C-terminal YPN_2354 IPR004925 HpaB/PvcC/4-BUDH YPN_2354 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily YPN_2354 IPR024677 4-HPA 3-monooxygenase large component/Pyoverdin chromophore biosynthetic protein YPN_2354 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal YPN_2355 IPR036259 MFS transporter superfamily YPN_2355 IPR020846 Major facilitator superfamily domain YPN_2355 IPR011701 Major facilitator superfamily YPN_2356 IPR023701 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase, Enterobacteriales YPN_2356 IPR005000 HpcH/HpaI aldolase/citrate lyase domain YPN_2356 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPN_2356 IPR040442 Pyruvate kinase-like domain superfamily YPN_2356 IPR012689 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase YPN_2357 IPR012690 2-oxo-hepta-4-ene-1,7-dioic acid hydratase YPN_2357 IPR011234 Fumarylacetoacetase-like, C-terminal YPN_2357 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily YPN_2358 IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase YPN_2358 IPR014347 Tautomerase/MIF superfamily YPN_2359 IPR011984 3,4-dihydroxyphenylacetate 2,3-dioxygenase YPN_2359 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B YPN_2360 IPR015590 Aldehyde dehydrogenase domain YPN_2360 IPR016161 Aldehyde/histidinol dehydrogenase YPN_2360 IPR016163 Aldehyde dehydrogenase, C-terminal YPN_2360 IPR011985 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase YPN_2360 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPN_2360 IPR016160 Aldehyde dehydrogenase, cysteine active site YPN_2360 IPR016162 Aldehyde dehydrogenase, N-terminal YPN_2361 IPR011234 Fumarylacetoacetase-like, C-terminal YPN_2361 IPR012684 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit YPN_2361 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily YPN_2361 IPR012686 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit YPN_2362 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily YPN_2362 IPR012684 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit YPN_2362 IPR012686 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit YPN_2362 IPR011234 Fumarylacetoacetase-like, C-terminal YPN_2363 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_2363 IPR023187 Transcriptional regulator MarR-type, conserved site YPN_2363 IPR000835 MarR-type HTH domain YPN_2363 IPR036390 Winged helix DNA-binding domain superfamily YPN_2363 IPR012712 HTH-type transcriptional regulator HpaR/FarR YPN_2364 IPR005170 Transporter-associated domain YPN_2364 IPR016169 FAD-binding, type PCMH, subdomain 2 YPN_2364 IPR005496 Integral membrane protein TerC YPN_2364 IPR036318 FAD-binding, type PCMH-like superfamily YPN_2364 IPR000644 CBS domain YPN_2365 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup YPN_2365 IPR004720 Phosphotransferase system, sorbose subfamily IIB component YPN_2365 IPR013789 Phosphotransferase system, mannose family IIA component YPN_2365 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily YPN_2365 IPR004701 Phosphotransferase system, mannose-type IIA component YPN_2365 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily YPN_2365 IPR033887 PTS system mannose/sorbose specific IIA subunit YPN_2366 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit YPN_2367 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component YPN_2368 IPR009328 Protein of unknown function DUF986 YPN_2369 IPR003810 Putative manganese efflux pump YPN_2369 IPR022929 Putative manganese efflux pump MntP YPN_2370 IPR037066 TonB-dependent receptor, plug domain superfamily YPN_2370 IPR012910 TonB-dependent receptor, plug domain YPN_2370 IPR039423 TonB-dependent receptor-like YPN_2370 IPR030149 TonB-dependent siderophore receptor FcuA/FatA YPN_2370 IPR000531 TonB-dependent receptor-like, beta-barrel YPN_2370 IPR010916 TonB box, conserved site YPN_2370 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPN_2370 IPR010917 TonB-dependent receptor, conserved site YPN_2370 IPR010105 TonB-dependent siderophore receptor YPN_2372 IPR035965 PAS domain superfamily YPN_2372 IPR000700 PAS-associated, C-terminal YPN_2372 IPR000014 PAS domain YPN_2372 IPR001610 PAC motif YPN_2372 IPR007895 MASE1 YPN_2372 IPR000160 GGDEF domain YPN_2372 IPR013655 PAS fold-3 YPN_2372 IPR035919 EAL domain superfamily YPN_2372 IPR001633 EAL domain YPN_2372 IPR013656 PAS fold-4 YPN_2372 IPR029787 Nucleotide cyclase YPN_2374 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted YPN_2374 IPR025714 Methyltransferase domain YPN_2374 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_2376 IPR012156 Cold shock, CspA YPN_2376 IPR012340 Nucleic acid-binding, OB-fold YPN_2376 IPR002059 Cold-shock protein, DNA-binding YPN_2376 IPR011129 Cold shock domain YPN_2376 IPR019844 Cold-shock (CSD) domain YPN_2377 IPR019672 Protein of unknown function DUF2627 YPN_2378 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPN_2378 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP YPN_2379 IPR004841 Amino acid permease/ SLC12A domain YPN_2379 IPR004840 Amino acid permease, conserved site YPN_2382 IPR025594 YebO-like protein YPN_2383 IPR025611 YobH-like protein YPN_2384 IPR020262 Uncharacterised protein family YecJ YPN_2385 IPR018060 DNA binding HTH domain, AraC-type YPN_2385 IPR018062 HTH domain AraC-type, conserved site YPN_2385 IPR009057 Homeobox-like domain superfamily YPN_2385 IPR020449 Transcription regulator HTH, AraC- type YPN_2387 IPR039421 Type I protein exporter YPN_2387 IPR003593 AAA+ ATPase domain YPN_2387 IPR003439 ABC transporter-like YPN_2387 IPR017871 ABC transporter, conserved site YPN_2387 IPR011527 ABC transporter type 1, transmembrane domain YPN_2387 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2387 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPN_2390 IPR010384 MtfA family YPN_2390 IPR042252 MtfA, N-terminal YPN_2390 IPR024079 Metallopeptidase, catalytic domain superfamily YPN_2391 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPN_2391 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPN_2391 IPR000843 LacI-type HTH domain YPN_2391 IPR028082 Periplasmic binding protein-like I YPN_2392 IPR003593 AAA+ ATPase domain YPN_2392 IPR001270 ClpA/B family YPN_2392 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_2392 IPR002611 IstB-like ATP-binding protein YPN_2392 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2393 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_2393 IPR001270 ClpA/B family YPN_2393 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2393 IPR003593 AAA+ ATPase domain YPN_2393 IPR002611 IstB-like ATP-binding protein YPN_2394 IPR006120 Resolvase, HTH domain YPN_2394 IPR036397 Ribonuclease H superfamily YPN_2394 IPR012337 Ribonuclease H-like superfamily YPN_2394 IPR001584 Integrase, catalytic core YPN_2394 IPR017894 HTH domain, IS21 transposase-type YPN_2395 IPR000843 LacI-type HTH domain YPN_2395 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPN_2395 IPR028082 Periplasmic binding protein-like I YPN_2395 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPN_2396 IPR001207 Transposase, mutator type YPN_2397 IPR018457 LacY/RafB permease family, conserved site YPN_2397 IPR036259 MFS transporter superfamily YPN_2397 IPR020846 Major facilitator superfamily domain YPN_2397 IPR000576 LacY/RafB permease family YPN_2398 IPR031705 Glycosyl hydrolase family 36, C-terminal YPN_2398 IPR031704 Glycosyl hydrolase family 36, N-terminal YPN_2398 IPR013785 Aldolase-type TIM barrel YPN_2398 IPR002252 Glycoside hydrolase family 36 YPN_2398 IPR038417 Alpha-galactosidase, N-terminal domain superfamily YPN_2398 IPR017853 Glycoside hydrolase superfamily YPN_2398 IPR000111 Glycoside hydrolase family 27/36, conserved site YPN_2400 IPR008278 4'-phosphopantetheinyl transferase domain YPN_2400 IPR037143 4'-phosphopantetheinyl transferase domain superfamily YPN_2400 IPR003542 Enterobactin synthetase-like, component D YPN_2400 IPR041354 4'-phosphopantetheinyl transferase, N-terminal domain YPN_2401 IPR004682 TRAP transporter solute receptor, DctP family YPN_2401 IPR018389 TRAP transporter solute receptor DctP/TeaA YPN_2401 IPR038404 TRAP transporter solute receptor DctP superfamily YPN_2403 IPR004681 TRAP transporter large membrane protein DctM YPN_2403 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit YPN_2404 IPR016032 Signal transduction response regulator, C-terminal effector YPN_2404 IPR000792 Transcription regulator LuxR, C-terminal YPN_2404 IPR001789 Signal transduction response regulator, receiver domain YPN_2404 IPR011006 CheY-like superfamily YPN_2405 IPR018636 Protein of unknown function DUF2058 YPN_2407 IPR037950 Peptidoglycan deacetylase PgdA-like YPN_2407 IPR002509 NodB homology domain YPN_2407 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPN_2409 IPR002528 Multi antimicrobial extrusion protein YPN_2410 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body YPN_2410 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_2410 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail YPN_2410 IPR001518 Argininosuccinate synthase YPN_2410 IPR023437 Argininosuccinate synthase, type 2 subfamily YPN_2410 IPR018223 Argininosuccinate synthase, conserved site YPN_2411 IPR000262 FMN-dependent dehydrogenase YPN_2411 IPR037396 FMN hydroxy acid dehydrogenase domain YPN_2411 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site YPN_2411 IPR020920 L-lactate dehydrogenase, bacterial YPN_2411 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent YPN_2411 IPR013785 Aldolase-type TIM barrel YPN_2412 IPR029065 Enolase C-terminal domain-like YPN_2412 IPR029017 Enolase-like, N-terminal YPN_2412 IPR036849 Enolase-like, C-terminal domain superfamily YPN_2412 IPR034610 L-fuconate dehydratase YPN_2412 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal YPN_2412 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain YPN_2413 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily YPN_2413 IPR011234 Fumarylacetoacetase-like, C-terminal YPN_2414 IPR002347 Short-chain dehydrogenase/reductase SDR YPN_2414 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPN_2414 IPR036291 NAD(P)-binding domain superfamily YPN_2415 IPR007263 Protein of unknown function DUF393 YPN_2416 IPR011701 Major facilitator superfamily YPN_2416 IPR036259 MFS transporter superfamily YPN_2416 IPR020846 Major facilitator superfamily domain YPN_2418 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPN_2418 IPR018392 LysM domain YPN_2418 IPR038177 Inverse autotransporter, beta-domain superfamily YPN_2418 IPR022409 PKD/Chitinase domain YPN_2418 IPR015217 Invasin, domain 3 YPN_2418 IPR008964 Invasin/intimin cell-adhesion fragments YPN_2418 IPR024519 Inverse autotransporter, beta-domain YPN_2418 IPR003535 Intimin/invasin bacterial adhesion mediator protein YPN_2418 IPR013783 Immunoglobulin-like fold YPN_2419 IPR001207 Transposase, mutator type YPN_2420 IPR007458 Protein of unknown function DUF496 YPN_2422 IPR012337 Ribonuclease H-like superfamily YPN_2422 IPR013520 Exonuclease, RNase T/DNA polymerase III YPN_2422 IPR036397 Ribonuclease H superfamily YPN_2422 IPR034748 Exonuclease I, C-terminal alpha-helical domain YPN_2422 IPR034747 Exonuclease I, SH3-like domain YPN_2422 IPR038649 Exonuclease I, SH3-like domain superfamily YPN_2422 IPR013620 Exodeoxyribonuclease I, C-terminal YPN_2422 IPR023607 Exodeoxyribonuclease I YPN_2423 IPR002293 Amino acid/polyamine transporter I YPN_2424 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA YPN_2424 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YPN_2424 IPR016205 Glycerol dehydrogenase YPN_2425 IPR017871 ABC transporter, conserved site YPN_2425 IPR015861 ABC transporter, ribose import, RbsA YPN_2425 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2425 IPR003593 AAA+ ATPase domain YPN_2425 IPR003439 ABC transporter-like YPN_2426 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2426 IPR003439 ABC transporter-like YPN_2426 IPR003593 AAA+ ATPase domain YPN_2426 IPR015861 ABC transporter, ribose import, RbsA YPN_2426 IPR017871 ABC transporter, conserved site YPN_2427 IPR001851 ABC transporter, permease YPN_2429 IPR036291 NAD(P)-binding domain superfamily YPN_2429 IPR001509 NAD-dependent epimerase/dehydratase YPN_2430 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPN_2430 IPR013115 Histidine biosynthesis HisG, C-terminal YPN_2430 IPR020621 ATP phosphoribosyltransferase HisG, long form YPN_2430 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPN_2430 IPR013820 ATP phosphoribosyltransferase, catalytic domain YPN_2430 IPR001348 ATP phosphoribosyltransferase HisG YPN_2430 IPR018198 ATP phosphoribosyltransferase, conserved site YPN_2431 IPR022695 Histidinol dehydrogenase, monofunctional YPN_2431 IPR001692 Histidinol dehydrogenase, conserved site YPN_2431 IPR016161 Aldehyde/histidinol dehydrogenase YPN_2431 IPR012131 Histidinol dehydrogenase YPN_2432 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site YPN_2432 IPR004839 Aminotransferase, class I/classII YPN_2432 IPR015424 Pyridoxal phosphate-dependent transferase YPN_2432 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_2432 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_2432 IPR005861 Histidinol-phosphate aminotransferase family YPN_2433 IPR020568 Ribosomal protein S5 domain 2-type fold YPN_2433 IPR036412 HAD-like superfamily YPN_2433 IPR000807 Imidazoleglycerol-phosphate dehydratase YPN_2433 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily YPN_2433 IPR006543 Histidinol-phosphate phosphatase YPN_2433 IPR005954 Histidinol-phosphatase YPN_2433 IPR020566 Histidine biosynthesis bifunctional protein HisB YPN_2433 IPR023214 HAD superfamily YPN_2433 IPR006549 HAD-superfamily hydrolase,subfamily IIIA YPN_2433 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site YPN_2435 IPR017926 Glutamine amidotransferase YPN_2435 IPR010139 Imidazole glycerol phosphate synthase, subunit H YPN_2435 IPR029062 Class I glutamine amidotransferase-like YPN_2436 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA YPN_2436 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YPN_2436 IPR011060 Ribulose-phosphate binding barrel YPN_2436 IPR013785 Aldolase-type TIM barrel YPN_2436 IPR006062 Histidine biosynthesis YPN_2437 IPR013785 Aldolase-type TIM barrel YPN_2437 IPR011060 Ribulose-phosphate binding barrel YPN_2437 IPR004651 Histidine biosynthesis, HisF YPN_2437 IPR006062 Histidine biosynthesis YPN_2438 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily YPN_2438 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase YPN_2438 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like YPN_2438 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain YPN_2438 IPR023019 Histidine biosynthesis bifunctional protein HisIE YPN_2439 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPN_2439 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding YPN_2439 IPR006183 6-phosphogluconate dehydrogenase YPN_2439 IPR036291 NAD(P)-binding domain superfamily YPN_2439 IPR006184 6-phosphogluconate-binding site YPN_2439 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating YPN_2439 IPR006114 6-phosphogluconate dehydrogenase, C-terminal YPN_2439 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPN_2440 IPR029044 Nucleotide-diphospho-sugar transferases YPN_2440 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type YPN_2440 IPR005835 Nucleotidyl transferase domain YPN_2441 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type YPN_2441 IPR005835 Nucleotidyl transferase domain YPN_2441 IPR029044 Nucleotide-diphospho-sugar transferases YPN_2442 IPR022770 Ferric iron reductase FhuF domain YPN_2442 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like YPN_2442 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPN_2443 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPN_2443 IPR000531 TonB-dependent receptor-like, beta-barrel YPN_2443 IPR010917 TonB-dependent receptor, conserved site YPN_2443 IPR039423 TonB-dependent receptor-like YPN_2443 IPR010105 TonB-dependent siderophore receptor YPN_2443 IPR012910 TonB-dependent receptor, plug domain YPN_2443 IPR037066 TonB-dependent receptor, plug domain superfamily YPN_2443 IPR011662 Secretin/TonB, short N-terminal domain YPN_2444 IPR002491 ABC transporter periplasmic binding domain YPN_2445 IPR037294 ABC transporter, BtuC-like YPN_2445 IPR000522 ABC transporter, permease protein, BtuC-like YPN_2446 IPR000522 ABC transporter, permease protein, BtuC-like YPN_2446 IPR037294 ABC transporter, BtuC-like YPN_2447 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2447 IPR003593 AAA+ ATPase domain YPN_2447 IPR003439 ABC transporter-like YPN_2447 IPR017871 ABC transporter, conserved site YPN_2448 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like YPN_2448 IPR022770 Ferric iron reductase FhuF domain YPN_2448 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPN_2450 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase YPN_2450 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_2451 IPR002129 Pyridoxal phosphate-dependent decarboxylase YPN_2451 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_2451 IPR015424 Pyridoxal phosphate-dependent transferase YPN_2451 IPR021115 Pyridoxal-phosphate binding site YPN_2452 IPR022770 Ferric iron reductase FhuF domain YPN_2452 IPR008090 Ferric iron reductase YPN_2452 IPR024726 Ferric iron reductase, C-terminal YPN_2453 IPR000644 CBS domain YPN_2453 IPR005170 Transporter-associated domain YPN_2453 IPR005496 Integral membrane protein TerC YPN_2453 IPR016169 FAD-binding, type PCMH, subdomain 2 YPN_2453 IPR036318 FAD-binding, type PCMH-like superfamily YPN_2454 IPR007844 AsmA YPN_2455 IPR029054 dUTPase-like YPN_2455 IPR036157 dUTPase-like superfamily YPN_2455 IPR033704 dUTPase, trimeric YPN_2455 IPR011962 dCTP deaminase YPN_2456 IPR000764 Uridine kinase-like YPN_2456 IPR026008 Uridine kinase YPN_2456 IPR006083 Phosphoribulokinase/uridine kinase YPN_2456 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2457 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 YPN_2457 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2457 IPR000808 Mrp, conserved site YPN_2457 IPR034904 Fe-S cluster assembly domain superfamily YPN_2457 IPR019591 Mrp/NBP35 ATP-binding protein YPN_2458 IPR023458 Methionine-tRNA ligase, type 1 YPN_2458 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal YPN_2458 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPN_2458 IPR015413 Methionyl/Leucyl tRNA synthetase YPN_2458 IPR033911 Methioninyl-tRNA synthetase core domain YPN_2458 IPR014758 Methionyl-tRNA synthetase YPN_2458 IPR012340 Nucleic acid-binding, OB-fold YPN_2458 IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain YPN_2458 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_2458 IPR002547 tRNA-binding domain YPN_2458 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YPN_2458 IPR029038 Methionyl-tRNA synthetase, Zn-domain YPN_2459 IPR036515 Transposase IS200-like superfamily YPN_2459 IPR002686 Transposase IS200-like YPN_2464 IPR036259 MFS transporter superfamily YPN_2464 IPR020846 Major facilitator superfamily domain YPN_2464 IPR011701 Major facilitator superfamily YPN_2465 IPR022957 Uncharacterised protein family UPF0299 YPN_2465 IPR005538 LrgA/CidA family YPN_2466 IPR005261 Conserved hypothetical protein CHP00659 YPN_2466 IPR007300 CidB/LrgB family YPN_2467 IPR016192 APOBEC/CMP deaminase, zinc-binding YPN_2467 IPR016193 Cytidine deaminase-like YPN_2467 IPR002125 Cytidine and deoxycytidylate deaminase domain YPN_2467 IPR020797 Cytidine deaminase, bacteria YPN_2467 IPR006263 Cytidine deaminase, homodimeric YPN_2467 IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain YPN_2468 IPR015884 Malic enzyme, conserved site YPN_2468 IPR023667 NAD-dependent malic enzyme, proteobacteria YPN_2468 IPR012301 Malic enzyme, N-terminal domain YPN_2468 IPR037062 Malic enzyme, N-terminal domain superfamily YPN_2468 IPR012302 Malic enzyme, NAD-binding YPN_2468 IPR036291 NAD(P)-binding domain superfamily YPN_2468 IPR001891 Malic oxidoreductase YPN_2469 IPR003848 Domain of unknown function DUF218 YPN_2469 IPR023604 Uncharacterised protein family SanA YPN_2470 IPR030158 Galactoside transport system permease protein MglC YPN_2470 IPR001851 ABC transporter, permease YPN_2471 IPR003593 AAA+ ATPase domain YPN_2471 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2471 IPR017871 ABC transporter, conserved site YPN_2471 IPR003439 ABC transporter-like YPN_2471 IPR015862 ABC transporter, galactose import, MglA YPN_2472 IPR028082 Periplasmic binding protein-like I YPN_2472 IPR025997 Periplasmic binding protein YPN_2473 IPR007349 Domain of unknown function DUF418 YPN_2474 IPR020602 GTP cyclohydrolase I domain YPN_2474 IPR018234 GTP cyclohydrolase I, conserved site YPN_2474 IPR001474 GTP cyclohydrolase I YPN_2475 IPR036259 MFS transporter superfamily YPN_2475 IPR010645 Uncharacterised MFS-type transporter YbfB YPN_2476 IPR000847 Transcription regulator HTH, LysR YPN_2476 IPR005119 LysR, substrate-binding YPN_2476 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_2476 IPR036390 Winged helix DNA-binding domain superfamily YPN_2477 IPR013154 Alcohol dehydrogenase, N-terminal YPN_2477 IPR036291 NAD(P)-binding domain superfamily YPN_2477 IPR020843 Polyketide synthase, enoylreductase domain YPN_2477 IPR014183 Alcohol dehydrogenase class III YPN_2477 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site YPN_2477 IPR011032 GroES-like superfamily YPN_2477 IPR013149 Alcohol dehydrogenase, C-terminal YPN_2478 IPR000801 Putative esterase YPN_2478 IPR029058 Alpha/Beta hydrolase fold YPN_2478 IPR014186 S-formylglutathione hydrolase YPN_2480 IPR022824 Multidrug resistance protein MdtA YPN_2480 IPR006143 RND efflux pump, membrane fusion protein YPN_2480 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YPN_2481 IPR017871 ABC transporter, conserved site YPN_2481 IPR003439 ABC transporter-like YPN_2481 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2481 IPR003593 AAA+ ATPase domain YPN_2483 IPR036135 MoeA, N-terminal and linker domain superfamily YPN_2483 IPR036688 MoeA, C-terminal, domain IV superfamily YPN_2483 IPR005111 MoeA, C-terminal, domain IV YPN_2483 IPR036425 MoaB/Mog-like domain superfamily YPN_2483 IPR005110 MoeA, N-terminal and linker domain YPN_2483 IPR008284 Molybdenum cofactor biosynthesis, conserved site YPN_2483 IPR001453 MoaB/Mog domain YPN_2483 IPR038987 Molybdopterin biosynthesis protein MoeA-like YPN_2484 IPR000594 THIF-type NAD/FAD binding fold YPN_2484 IPR012730 Molybdopterin synthase sulfurylase MoeB YPN_2484 IPR035985 Ubiquitin-activating enzyme YPN_2485 IPR001207 Transposase, mutator type YPN_2487 IPR003439 ABC transporter-like YPN_2487 IPR003593 AAA+ ATPase domain YPN_2487 IPR032781 ABC-transporter extension domain YPN_2487 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2499 IPR038717 Tc1-like transposase, DDE domain YPN_2499 IPR012337 Ribonuclease H-like superfamily YPN_2499 IPR025959 Winged helix-turn helix domain YPN_2499 IPR009057 Homeobox-like domain superfamily YPN_2500 IPR025959 Winged helix-turn helix domain YPN_2500 IPR009057 Homeobox-like domain superfamily YPN_2500 IPR038717 Tc1-like transposase, DDE domain YPN_2500 IPR012337 Ribonuclease H-like superfamily YPN_2501 IPR009057 Homeobox-like domain superfamily YPN_2501 IPR025959 Winged helix-turn helix domain YPN_2501 IPR012337 Ribonuclease H-like superfamily YPN_2501 IPR038717 Tc1-like transposase, DDE domain YPN_2508 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2508 IPR041546 ClpA/ClpB, AAA lid domain YPN_2508 IPR003959 ATPase, AAA-type, core YPN_2508 IPR004176 Clp, N-terminal YPN_2508 IPR018368 ClpA/B, conserved site 1 YPN_2508 IPR036628 Clp, N-terminal domain superfamily YPN_2508 IPR003593 AAA+ ATPase domain YPN_2508 IPR019489 Clp ATPase, C-terminal YPN_2508 IPR017729 Type VI secretion system, ATPase ClpV1 YPN_2508 IPR001270 ClpA/B family YPN_2510 IPR006664 Outer membrane protein, bacterial YPN_2510 IPR006665 OmpA-like domain YPN_2510 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPN_2510 IPR008722 Outer membrane porin F, N-terminal YPN_2510 IPR036737 OmpA-like domain superfamily YPN_2510 IPR028974 TSP type-3 repeat YPN_2510 IPR006690 Outer membrane protein, OmpA-like, conserved site YPN_2515 IPR001227 Acyl transferase domain superfamily YPN_2515 IPR014043 Acyl transferase YPN_2515 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPN_2515 IPR024925 Malonyl CoA-acyl carrier protein transacylase YPN_2515 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type YPN_2515 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YPN_2516 IPR036736 ACP-like superfamily YPN_2516 IPR009081 Phosphopantetheine binding ACP domain YPN_2518 IPR002347 Short-chain dehydrogenase/reductase SDR YPN_2518 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPN_2518 IPR036291 NAD(P)-binding domain superfamily YPN_2519 IPR001753 Enoyl-CoA hydratase/isomerase YPN_2519 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site YPN_2519 IPR029045 ClpP/crotonase-like domain superfamily YPN_2521 IPR016039 Thiolase-like YPN_2521 IPR013746 Hydroxymethylglutaryl-coenzyme A synthase C-terminal domain YPN_2521 IPR013528 Hydroxymethylglutaryl-coenzyme A synthase, N-terminal YPN_2522 IPR002347 Short-chain dehydrogenase/reductase SDR YPN_2522 IPR036291 NAD(P)-binding domain superfamily YPN_2522 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPN_2522 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase YPN_2523 IPR016039 Thiolase-like YPN_2523 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPN_2523 IPR014030 Beta-ketoacyl synthase, N-terminal YPN_2523 IPR014031 Beta-ketoacyl synthase, C-terminal YPN_2523 IPR018201 Beta-ketoacyl synthase, active site YPN_2523 IPR000794 Beta-ketoacyl synthase YPN_2523 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 YPN_2524 IPR029069 HotDog domain superfamily YPN_2524 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ YPN_2524 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YPN_2526 IPR036291 NAD(P)-binding domain superfamily YPN_2526 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPN_2526 IPR002347 Short-chain dehydrogenase/reductase SDR YPN_2526 IPR011294 3-hydroxybutyrate dehydrogenase YPN_2527 IPR016166 FAD-binding domain, PCMH-type YPN_2527 IPR012951 Berberine/berberine-like YPN_2527 IPR006093 Oxygen oxidoreductase covalent FAD-binding site YPN_2527 IPR016167 FAD-binding, type PCMH, subdomain 1 YPN_2527 IPR016169 FAD-binding, type PCMH, subdomain 2 YPN_2527 IPR016164 FAD-linked oxidase-like, C-terminal YPN_2527 IPR036318 FAD-binding, type PCMH-like superfamily YPN_2527 IPR006094 FAD linked oxidase, N-terminal YPN_2531 IPR032874 DDE domain YPN_2531 IPR001584 Integrase, catalytic core YPN_2531 IPR012337 Ribonuclease H-like superfamily YPN_2531 IPR036397 Ribonuclease H superfamily YPN_2532 IPR042072 DsrC-like protein, C-terminal domain YPN_2532 IPR007453 Sulphur transfer protein DsrC/TusE YPN_2532 IPR025526 DsrC-like domain superfamily YPN_2533 IPR020456 Acylphosphatase YPN_2533 IPR017968 Acylphosphatase, conserved site YPN_2533 IPR028627 Acylphosphatase, bacteria YPN_2533 IPR036046 Acylphosphatase-like domain superfamily YPN_2533 IPR001792 Acylphosphatase-like domain YPN_2534 IPR023542 rRNA large subunit methyltransferase I YPN_2534 IPR019614 S-adenosylmethionine-dependent methyltransferase YPN_2534 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_2534 IPR002478 PUA domain YPN_2534 IPR041532 RlmI, PUA-like domain YPN_2534 IPR015947 PUA-like superfamily YPN_2534 IPR036974 PUA domain superfamily YPN_2535 IPR022866 Heat shock protein HspQ YPN_2535 IPR036623 Hemimethylated DNA-binding domain superfamily YPN_2535 IPR011722 Hemimethylated DNA-binding domain YPN_2536 IPR003781 CoA-binding YPN_2536 IPR036291 NAD(P)-binding domain superfamily YPN_2537 IPR018635 Uncharacterised protein family UPF0319 YPN_2538 IPR004363 Methylglyoxal synthase YPN_2538 IPR018148 Methylglyoxal synthase, active site YPN_2538 IPR036914 Methylglyoxal synthase-like domain superfamily YPN_2538 IPR011607 Methylglyoxal synthase-like domain YPN_2539 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2539 IPR022161 DNA helicase IV, N-terminal domain YPN_2539 IPR034739 UvrD/AddA helicase, N-terminal YPN_2539 IPR000212 DNA helicase, UvrD/REP type YPN_2539 IPR014017 UvrD-like DNA helicase, C-terminal YPN_2539 IPR014016 UvrD-like helicase, ATP-binding domain YPN_2540 IPR005185 Inner membrane component domain YPN_2540 IPR031308 Uncharacterised conserved protein UCP028777 YPN_2541 IPR032692 Integral membrane protein YccS, N-terminal YPN_2541 IPR010020 Integral membrane protein, YccS/YhfK YPN_2541 IPR010019 Integral membrane protein, YccS YPN_2542 IPR026256 Transcriptional regulator, TfoX/Sxy-type YPN_2542 IPR007076 TfoX, N-terminal YPN_2542 IPR007077 TfoX, C-terminal YPN_2543 IPR004596 Cell division suppressor protein, SulA YPN_2543 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2544 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPN_2544 IPR002368 Outer membrane protein, OmpA YPN_2544 IPR006664 Outer membrane protein, bacterial YPN_2544 IPR036737 OmpA-like domain superfamily YPN_2544 IPR006690 Outer membrane protein, OmpA-like, conserved site YPN_2544 IPR006665 OmpA-like domain YPN_2544 IPR000498 Outer membrane protein OmpA-like, transmembrane domain YPN_2545 IPR002686 Transposase IS200-like YPN_2545 IPR036515 Transposase IS200-like superfamily YPN_2546 IPR013321 Arc-type ribbon-helix-helix YPN_2546 IPR038339 MatP, N-terminal domain superfamily YPN_2546 IPR035375 MatP, C-terminal ribbon-helix-helix domain YPN_2546 IPR009390 Macrodomain Ter protein, MatP YPN_2546 IPR035087 MatP, N-terminal YPN_2547 IPR008269 Peptidase S16, Lon proteolytic domain YPN_2547 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPN_2547 IPR020568 Ribosomal protein S5 domain 2-type fold YPN_2547 IPR027065 Lon protease YPN_2547 IPR041699 Lon protease, AAA domain YPN_2548 IPR029069 HotDog domain superfamily YPN_2548 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ YPN_2548 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA YPN_2549 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPN_2549 IPR016039 Thiolase-like YPN_2549 IPR014031 Beta-ketoacyl synthase, C-terminal YPN_2549 IPR018201 Beta-ketoacyl synthase, active site YPN_2549 IPR000794 Beta-ketoacyl synthase YPN_2549 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 YPN_2549 IPR014030 Beta-ketoacyl synthase, N-terminal YPN_2550 IPR001584 Integrase, catalytic core YPN_2550 IPR017894 HTH domain, IS21 transposase-type YPN_2550 IPR036397 Ribonuclease H superfamily YPN_2550 IPR006120 Resolvase, HTH domain YPN_2550 IPR012337 Ribonuclease H-like superfamily YPN_2551 IPR003593 AAA+ ATPase domain YPN_2551 IPR001270 ClpA/B family YPN_2551 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_2551 IPR002611 IstB-like ATP-binding protein YPN_2551 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2552 IPR014030 Beta-ketoacyl synthase, N-terminal YPN_2552 IPR014031 Beta-ketoacyl synthase, C-terminal YPN_2552 IPR018201 Beta-ketoacyl synthase, active site YPN_2552 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPN_2552 IPR000794 Beta-ketoacyl synthase YPN_2552 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 YPN_2552 IPR016039 Thiolase-like YPN_2553 IPR002686 Transposase IS200-like YPN_2553 IPR036515 Transposase IS200-like superfamily YPN_2554 IPR023200 Ribosome modulation factor domain superfamily YPN_2554 IPR007040 Ribosome modulation factor YPN_2555 IPR005586 ABC-type transport auxiliary lipoprotein component YPN_2556 IPR003399 Mce/MlaD YPN_2557 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type YPN_2557 IPR007498 Intermembrane transport protein PqiA-like YPN_2558 IPR003439 ABC transporter-like YPN_2558 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2558 IPR017871 ABC transporter, conserved site YPN_2558 IPR032781 ABC-transporter extension domain YPN_2558 IPR032524 ABC transporter Uup, C-terminal YPN_2558 IPR003593 AAA+ ATPase domain YPN_2558 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily YPN_2559 IPR000241 Putative RNA methylase domain YPN_2559 IPR004114 THUMP domain YPN_2559 IPR019614 S-adenosylmethionine-dependent methyltransferase YPN_2559 IPR017244 Ribosomal RNA large subunit methyltransferase K/L YPN_2559 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPN_2559 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_2560 IPR012675 Beta-grasp domain superfamily YPN_2560 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPN_2560 IPR005302 Molybdenum cofactor sulfurase, C-terminal YPN_2560 IPR036010 2Fe-2S ferredoxin-like superfamily YPN_2560 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPN_2560 IPR011037 Pyruvate kinase-like, insert domain superfamily YPN_2560 IPR005303 MOSC, N-terminal beta barrel YPN_2561 IPR009809 Cell division protein ZapC YPN_2562 IPR013785 Aldolase-type TIM barrel YPN_2562 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 YPN_2562 IPR005719 Dihydroorotate dehydrogenase, class 2 YPN_2562 IPR001295 Dihydroorotate dehydrogenase, conserved site YPN_2562 IPR005720 Dihydroorotate dehydrogenase domain YPN_2563 IPR014782 Peptidase M1, membrane alanine aminopeptidase YPN_2563 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase YPN_2563 IPR027268 Peptidase M4/M1, CTD superfamily YPN_2563 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold YPN_2563 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily YPN_2563 IPR042097 Aminopeptidase N-like , N-terminal YPN_2563 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily YPN_2563 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal YPN_2563 IPR012779 Peptidase M1, alanyl aminopeptidase YPN_2564 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal YPN_2564 IPR040727 Nicotinate phosphoribosyltransferase, N-terminal domain YPN_2564 IPR041525 Nicotinate/nicotinamide phosphoribosyltransferase YPN_2564 IPR007229 Nicotinate phosphoribosyltransferase family YPN_2564 IPR006406 Nicotinate phosphoribosyltransferase YPN_2565 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb YPN_2565 IPR004522 Asparagine-tRNA ligase YPN_2565 IPR012340 Nucleic acid-binding, OB-fold YPN_2565 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YPN_2565 IPR006195 Aminoacyl-tRNA synthetase, class II YPN_2565 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YPN_2566 IPR001897 Porin, gammaproteobacterial YPN_2566 IPR023614 Porin domain superfamily YPN_2566 IPR033900 Porin domain, Gram-negative type YPN_2566 IPR013793 Porin, Gram-negative type, conserved site YPN_2566 IPR001702 Porin, Gram-negative type YPN_2567 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site YPN_2567 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_2567 IPR004839 Aminotransferase, class I/classII YPN_2567 IPR015424 Pyridoxal phosphate-dependent transferase YPN_2567 IPR000796 Aspartate/other aminotransferase YPN_2567 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_2568 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPN_2568 IPR001279 Metallo-beta-lactamase YPN_2569 IPR010275 Protein of unknown function DUF882 YPN_2569 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily YPN_2569 IPR006311 Twin-arginine translocation pathway, signal sequence YPN_2570 IPR005490 L,D-transpeptidase catalytic domain YPN_2570 IPR002477 Peptidoglycan binding-like YPN_2570 IPR036365 PGBD-like superfamily YPN_2570 IPR038063 L,D-transpeptidase catalytic domain-like YPN_2572 IPR007406 MukB, N-terminal domain YPN_2572 IPR032520 MukB, hinge domain YPN_2572 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2572 IPR012090 Chromosome partition protein MukB YPN_2573 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE YPN_2573 IPR042038 MukE, N-terminal domain YPN_2573 IPR042037 MukE, C-terminal domain YPN_2574 IPR033440 Chromosome partition protein MukF, middle domain YPN_2574 IPR005582 Chromosome partition protein MukF YPN_2574 IPR033441 Chromosome partition protein MukF, C-terminal domain YPN_2574 IPR038198 MukF, C-terminal domain superfamily YPN_2574 IPR036141 MukF, middle domain superfamily YPN_2574 IPR033439 Chromosome partition protein MukF, winged-helix domain YPN_2574 IPR010916 TonB box, conserved site YPN_2574 IPR036390 Winged helix DNA-binding domain superfamily YPN_2574 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_2575 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_2575 IPR033664 tRNA 5-carboxymethoxyuridine methyltransferase YPN_2576 IPR002575 Aminoglycoside phosphotransferase YPN_2576 IPR011009 Protein kinase-like domain superfamily YPN_2577 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase YPN_2577 IPR003329 Acylneuraminate cytidylyltransferase YPN_2577 IPR029044 Nucleotide-diphospho-sugar transferases YPN_2578 IPR005651 Trm112-like YPN_2579 IPR012340 Nucleic acid-binding, OB-fold YPN_2579 IPR002059 Cold-shock protein, DNA-binding YPN_2579 IPR019844 Cold-shock (CSD) domain YPN_2579 IPR011129 Cold shock domain YPN_2579 IPR012156 Cold shock, CspA YPN_2580 IPR009770 Domain of unknown function DUF1338 YPN_2581 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2581 IPR003758 Tetraacyldisaccharide 4'-kinase YPN_2582 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPN_2582 IPR003439 ABC transporter-like YPN_2582 IPR017871 ABC transporter, conserved site YPN_2582 IPR039421 Type I protein exporter YPN_2582 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2582 IPR011527 ABC transporter type 1, transmembrane domain YPN_2582 IPR011917 ABC transporter, lipid A export, MsbA YPN_2582 IPR003593 AAA+ ATPase domain YPN_2583 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPN_2583 IPR001279 Metallo-beta-lactamase YPN_2583 IPR004797 Competence protein ComEC/Rec2 YPN_2583 IPR004477 ComEC/Rec2-related protein YPN_2583 IPR035681 ComA-like, MBL domain YPN_2584 IPR000119 Histone-like DNA-binding protein YPN_2584 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily YPN_2584 IPR020816 Histone-like DNA-binding protein, conserved site YPN_2584 IPR005685 Integration host factor, beta subunit YPN_2585 IPR003029 S1 domain YPN_2585 IPR012340 Nucleic acid-binding, OB-fold YPN_2585 IPR000110 Ribosomal protein S1 YPN_2585 IPR022967 RNA-binding domain, S1 YPN_2586 IPR003136 Cytidylate kinase YPN_2586 IPR011994 Cytidylate kinase domain YPN_2586 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2587 IPR001986 Enolpyruvate transferase domain YPN_2587 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site YPN_2587 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta YPN_2587 IPR036968 Enolpyruvate transferase domain superfamily YPN_2587 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase YPN_2588 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_2588 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPN_2588 IPR000192 Aminotransferase class V domain YPN_2588 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_2588 IPR022278 Phosphoserine aminotransferase YPN_2588 IPR015424 Pyridoxal phosphate-dependent transferase YPN_2590 IPR011049 Serralysin-like metalloprotease, C-terminal YPN_2590 IPR024973 ESPR domain YPN_2590 IPR008635 Coiled stalk of trimeric autotransporter adhesin YPN_2590 IPR008640 Head domain of trimeric autotransporter adhesin YPN_2590 IPR008635 Coiled stalk of trimeric autotransporter adhesin YPN_2590 IPR024973 ESPR domain YPN_2590 IPR011049 Serralysin-like metalloprotease, C-terminal YPN_2590 IPR005594 YadA-like, C-terminal YPN_2590 IPR005594 YadA-like, C-terminal YPN_2590 IPR008640 Head domain of trimeric autotransporter adhesin YPN_2591 IPR004550 L-asparaginase, type II YPN_2591 IPR037152 L-asparaginase, N-terminal domain superfamily YPN_2591 IPR036152 Asparaginase/glutaminase-like superfamily YPN_2591 IPR027475 Asparaginase/glutaminase, active site 2 YPN_2591 IPR027474 L-asparaginase, N-terminal YPN_2591 IPR027473 L-asparaginase, C-terminal YPN_2591 IPR006034 Asparaginase/glutaminase-like YPN_2591 IPR020827 Asparaginase/glutaminase, active site 1 YPN_2591 IPR040919 Asparaginase/glutaminase, C-terminal YPN_2592 IPR003776 YcaO-like domain YPN_2592 IPR041080 YcaO cyclodehydratase, C-terminal YPN_2593 IPR000292 Formate/nitrite transporter YPN_2593 IPR024002 Formate/nitrite transporter, conserved site YPN_2593 IPR023271 Aquaporin-like YPN_2593 IPR023999 Formate transporter FocA, putative YPN_2594 IPR004184 Pyruvate formate lyase domain YPN_2594 IPR001150 Glycine radical domain YPN_2594 IPR019777 Formate C-acetyltransferase glycine radical, conserved site YPN_2594 IPR005949 Formate acetyltransferase YPN_2596 IPR007197 Radical SAM YPN_2596 IPR012838 Pyruvate formate-lyase 1 activating enzyme YPN_2596 IPR001989 Radical-activating enzyme, conserved site YPN_2596 IPR034465 Pyruvate formate-lyase activase YPN_2596 IPR013785 Aldolase-type TIM barrel YPN_2596 IPR012839 Organic radical enzyme activase YPN_2596 IPR034457 Organic radical-activating enzymes YPN_2597 IPR011701 Major facilitator superfamily YPN_2597 IPR020846 Major facilitator superfamily domain YPN_2597 IPR036259 MFS transporter superfamily YPN_2597 IPR023745 MSF-type transporter, YcaD YPN_2598 IPR006120 Resolvase, HTH domain YPN_2598 IPR001584 Integrase, catalytic core YPN_2598 IPR017894 HTH domain, IS21 transposase-type YPN_2598 IPR036397 Ribonuclease H superfamily YPN_2598 IPR012337 Ribonuclease H-like superfamily YPN_2599 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2599 IPR002611 IstB-like ATP-binding protein YPN_2599 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_2599 IPR001270 ClpA/B family YPN_2599 IPR003593 AAA+ ATPase domain YPN_2600 IPR011701 Major facilitator superfamily YPN_2600 IPR023745 MSF-type transporter, YcaD YPN_2600 IPR036259 MFS transporter superfamily YPN_2600 IPR020846 Major facilitator superfamily domain YPN_2601 IPR015866 Serine-tRNA synthetase, type1, N-terminal YPN_2601 IPR033729 Serine-tRNA ligase catalytic core domain YPN_2601 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily YPN_2601 IPR002317 Serine-tRNA ligase, type1 YPN_2601 IPR006195 Aminoacyl-tRNA synthetase, class II YPN_2601 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) YPN_2601 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm YPN_2602 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2602 IPR003593 AAA+ ATPase domain YPN_2602 IPR003959 ATPase, AAA-type, core YPN_2602 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YPN_2602 IPR032423 AAA C-terminal domain YPN_2602 IPR021886 MgsA AAA+ ATPase C-terminal YPN_2603 IPR004564 Outer membrane lipoprotein carrier protein LolA-like YPN_2603 IPR029046 Lipoprotein localisation LolA/LolB/LppX YPN_2603 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria YPN_2604 IPR041027 FtsK alpha domain YPN_2604 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_2604 IPR025199 DNA translocase FtsK, 4TM region YPN_2604 IPR002543 FtsK domain YPN_2604 IPR018541 FtsK gamma domain YPN_2604 IPR036390 Winged helix DNA-binding domain superfamily YPN_2604 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2605 IPR036390 Winged helix DNA-binding domain superfamily YPN_2605 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_2605 IPR019885 Transcription regulator HTH, AsnC-type, conserved site YPN_2605 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YPN_2605 IPR019888 Transcription regulator AsnC-type YPN_2605 IPR011008 Dimeric alpha-beta barrel YPN_2605 IPR000485 AsnC-type HTH domain YPN_2605 IPR011991 ArsR-like helix-turn-helix domain YPN_2606 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site YPN_2606 IPR005982 Thioredoxin reductase YPN_2606 IPR023753 FAD/NAD(P)-binding domain YPN_2606 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_2607 IPR011527 ABC transporter type 1, transmembrane domain YPN_2607 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPN_2607 IPR003439 ABC transporter-like YPN_2607 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2607 IPR039421 Type I protein exporter YPN_2607 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD YPN_2607 IPR003593 AAA+ ATPase domain YPN_2607 IPR017871 ABC transporter, conserved site YPN_2608 IPR011527 ABC transporter type 1, transmembrane domain YPN_2608 IPR003439 ABC transporter-like YPN_2608 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2608 IPR017871 ABC transporter, conserved site YPN_2608 IPR003593 AAA+ ATPase domain YPN_2608 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC YPN_2608 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPN_2609 IPR042203 Leucyl/phenylalanyl-tRNA-protein transferase, C-terminal YPN_2609 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase YPN_2609 IPR016181 Acyl-CoA N-acyltransferase YPN_2610 IPR006196 RNA-binding domain, S1, IF1 type YPN_2610 IPR012340 Nucleic acid-binding, OB-fold YPN_2610 IPR022967 RNA-binding domain, S1 YPN_2610 IPR004368 Translation initiation factor IF-1 YPN_2612 IPR003959 ATPase, AAA-type, core YPN_2612 IPR019489 Clp ATPase, C-terminal YPN_2612 IPR001270 ClpA/B family YPN_2612 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2612 IPR003593 AAA+ ATPase domain YPN_2612 IPR028299 ClpA/B, conserved site 2 YPN_2612 IPR018368 ClpA/B, conserved site 1 YPN_2612 IPR041546 ClpA/ClpB, AAA lid domain YPN_2612 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA YPN_2612 IPR036628 Clp, N-terminal domain superfamily YPN_2612 IPR004176 Clp, N-terminal YPN_2613 IPR003769 Adaptor protein ClpS, core YPN_2613 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like YPN_2613 IPR022935 ATP-dependent Clp protease adaptor protein ClpS YPN_2614 IPR012156 Cold shock, CspA YPN_2614 IPR011129 Cold shock domain YPN_2614 IPR019844 Cold-shock (CSD) domain YPN_2614 IPR012751 CspD, cold shock YPN_2614 IPR002059 Cold-shock protein, DNA-binding YPN_2614 IPR012340 Nucleic acid-binding, OB-fold YPN_2615 IPR003439 ABC transporter-like YPN_2615 IPR003838 ABC transporter permease protein domain YPN_2615 IPR017911 ABC transporter, macrolide export, ATP-binding domain YPN_2615 IPR025857 MacB-like periplasmic core domain YPN_2615 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2615 IPR017871 ABC transporter, conserved site YPN_2615 IPR003593 AAA+ ATPase domain YPN_2616 IPR006143 RND efflux pump, membrane fusion protein YPN_2616 IPR030190 Macrolide export protein MacA YPN_2616 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPN_2618 IPR007488 Protein of unknown function DUF535 YPN_2619 IPR022602 Protein of unknown function DUF2813 YPN_2619 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2619 IPR006171 TOPRIM domain YPN_2619 IPR034139 OLD protein-like, TOPRIM domain YPN_2620 IPR005642 Lysine exporter LysO YPN_2621 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase YPN_2621 IPR016100 Prismane, alpha-bundle YPN_2621 IPR016099 Prismane-like, alpha/beta-sandwich YPN_2621 IPR011254 Prismane-like superfamily YPN_2621 IPR010048 Hydroxylamine reductase YPN_2622 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPN_2622 IPR012675 Beta-grasp domain superfamily YPN_2622 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPN_2622 IPR036010 2Fe-2S ferredoxin-like superfamily YPN_2622 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPN_2622 IPR000951 Phthalate dioxygenase reductase YPN_2622 IPR017927 FAD-binding domain, ferredoxin reductase-type YPN_2622 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPN_2622 IPR017938 Riboflavin synthase-like beta-barrel YPN_2623 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPN_2623 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPN_2623 IPR000399 TPP-binding enzyme, conserved site YPN_2623 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPN_2623 IPR029061 Thiamin diphosphate-binding fold YPN_2623 IPR012000 Thiamine pyrophosphate enzyme, central domain YPN_2625 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_2625 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase YPN_2625 IPR015424 Pyridoxal phosphate-dependent transferase YPN_2625 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_2625 IPR023603 Threonine aldolase YPN_2626 IPR036291 NAD(P)-binding domain superfamily YPN_2626 IPR016040 NAD(P)-binding domain YPN_2626 IPR021295 Protein of unknown function DUF2867 YPN_2627 IPR036291 NAD(P)-binding domain superfamily YPN_2627 IPR001509 NAD-dependent epimerase/dehydratase YPN_2628 IPR024289 Domain of unknown function DUF3828 YPN_2630 IPR008240 Chorismate mutase, periplasmic YPN_2630 IPR002701 Chorismate mutase II, prokaryotic-type YPN_2630 IPR036263 Chorismate mutase type II superfamily YPN_2631 IPR017871 ABC transporter, conserved site YPN_2631 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2631 IPR003593 AAA+ ATPase domain YPN_2631 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type YPN_2631 IPR003439 ABC transporter-like YPN_2632 IPR001320 Ionotropic glutamate receptor YPN_2632 IPR018313 Solute-binding protein family 3, conserved site YPN_2632 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPN_2632 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YPN_2633 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPN_2633 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_2633 IPR035906 MetI-like superfamily YPN_2634 IPR035906 MetI-like superfamily YPN_2634 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPN_2634 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_2635 IPR035906 MetI-like superfamily YPN_2635 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_2635 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPN_2636 IPR000620 EamA domain YPN_2637 IPR016935 Opine metallophore dehydrogenase YPN_2637 IPR036291 NAD(P)-binding domain superfamily YPN_2638 IPR004298 Nicotianamine synthase YPN_2638 IPR036291 NAD(P)-binding domain superfamily YPN_2639 IPR003439 ABC transporter-like YPN_2639 IPR017871 ABC transporter, conserved site YPN_2639 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2639 IPR003593 AAA+ ATPase domain YPN_2640 IPR000522 ABC transporter, permease protein, BtuC-like YPN_2640 IPR037294 ABC transporter, BtuC-like YPN_2643 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPN_2643 IPR018313 Solute-binding protein family 3, conserved site YPN_2643 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YPN_2643 IPR001320 Ionotropic glutamate receptor YPN_2644 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC YPN_2644 IPR030391 RNA methyltransferase TrmA, conserved site YPN_2644 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_2644 IPR010280 (Uracil-5)-methyltransferase family YPN_2644 IPR030390 RNA methyltransferase TrmA, active site YPN_2645 IPR019703 Protein of unknown function DUF2593 YPN_2646 IPR035906 MetI-like superfamily YPN_2646 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_2647 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_2647 IPR035906 MetI-like superfamily YPN_2648 IPR008995 Molybdate/tungstate binding, C-terminal YPN_2648 IPR003593 AAA+ ATPase domain YPN_2648 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit YPN_2648 IPR003439 ABC transporter-like YPN_2648 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2648 IPR017871 ABC transporter, conserved site YPN_2648 IPR013611 Transport-associated OB, type 2 YPN_2649 IPR006059 Bacterial extracellular solute-binding protein YPN_2649 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein YPN_2650 IPR019660 Putative sensory transduction regulator YbjN YPN_2651 IPR010815 Protein of unknown function DUF1418 YPN_2652 IPR011767 Glutaredoxin active site YPN_2652 IPR011902 Glutaredoxin, GrxA YPN_2652 IPR014025 Glutaredoxin subgroup YPN_2652 IPR002109 Glutaredoxin YPN_2652 IPR036249 Thioredoxin-like superfamily YPN_2653 IPR023017 Transport protein YbjL, putative YPN_2653 IPR006037 Regulator of K+ conductance, C-terminal YPN_2653 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily YPN_2653 IPR006512 YidE/YbjL duplication YPN_2655 IPR033879 Undecaprenyl-diphosphatase YPN_2655 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YPN_2655 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily YPN_2656 IPR002915 DeoC/FbaB/ lacD aldolase YPN_2656 IPR028581 Deoxyribose-phosphate aldolase type I YPN_2656 IPR011343 Deoxyribose-phosphate aldolase YPN_2656 IPR013785 Aldolase-type TIM barrel YPN_2657 IPR014036 DeoR C-terminal sensor domain YPN_2657 IPR001034 DeoR-type HTH domain YPN_2657 IPR037171 NagB/RpiA transferase-like YPN_2657 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPN_2658 IPR004694 Hydroxy amino acid transporter YPN_2659 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal YPN_2659 IPR012338 Beta-lactamase/transpeptidase-like YPN_2659 IPR015956 Penicillin-binding protein, C-terminal domain superfamily YPN_2659 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A YPN_2659 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal YPN_2659 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily YPN_2660 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_2660 IPR035906 MetI-like superfamily YPN_2661 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2661 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain YPN_2661 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal YPN_2661 IPR017871 ABC transporter, conserved site YPN_2661 IPR003439 ABC transporter-like YPN_2661 IPR026253 Methionine import ATP-binding protein MetN YPN_2661 IPR003593 AAA+ ATPase domain YPN_2661 IPR018449 NIL domain YPN_2662 IPR004872 Lipoprotein NlpA family YPN_2664 IPR023214 HAD superfamily YPN_2664 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like YPN_2664 IPR036412 HAD-like superfamily YPN_2665 IPR036249 Thioredoxin-like superfamily YPN_2665 IPR004046 Glutathione S-transferase, C-terminal YPN_2665 IPR004045 Glutathione S-transferase, N-terminal YPN_2665 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YPN_2665 IPR010987 Glutathione S-transferase, C-terminal-like YPN_2666 IPR039426 Vitamin B12 transporter BtuB-like YPN_2666 IPR012910 TonB-dependent receptor, plug domain YPN_2666 IPR010917 TonB-dependent receptor, conserved site YPN_2666 IPR037066 TonB-dependent receptor, plug domain superfamily YPN_2666 IPR000531 TonB-dependent receptor-like, beta-barrel YPN_2666 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPN_2666 IPR010916 TonB box, conserved site YPN_2667 IPR003593 AAA+ ATPase domain YPN_2667 IPR003439 ABC transporter-like YPN_2667 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2667 IPR015863 ABC transporter, hemin import, HmuV YPN_2668 IPR000522 ABC transporter, permease protein, BtuC-like YPN_2668 IPR037294 ABC transporter, BtuC-like YPN_2670 IPR004840 Amino acid permease, conserved site YPN_2670 IPR004841 Amino acid permease/ SLC12A domain YPN_2671 IPR005119 LysR, substrate-binding YPN_2671 IPR000847 Transcription regulator HTH, LysR YPN_2671 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_2671 IPR036390 Winged helix DNA-binding domain superfamily YPN_2672 IPR018383 Uncharacterised protein family UPF0324, prokaryote YPN_2672 IPR004630 Uncharacterised protein family UPF0324, bacteria YPN_2673 IPR018246 AP endonuclease 2, zinc binding site YPN_2673 IPR013022 Xylose isomerase-like, TIM barrel domain YPN_2673 IPR001719 AP endonuclease 2 YPN_2673 IPR036237 Xylose isomerase-like superfamily YPN_2674 IPR018030 Fimbrial membrane usher, conserved site YPN_2674 IPR000015 Outer membrane usher protein YPN_2674 IPR042186 Outer membrane usher protein FimD, plug domain YPN_2674 IPR037224 PapC, N-terminal domain superfamily YPN_2674 IPR025949 PapC-like, C-terminal domain YPN_2674 IPR025885 PapC, N-terminal domain YPN_2675 IPR008962 PapD-like superfamily YPN_2675 IPR016148 Pili assembly chaperone, C-terminal YPN_2675 IPR018046 Pili assembly chaperone, conserved site YPN_2675 IPR016147 Pili assembly chaperone, N-terminal YPN_2675 IPR013783 Immunoglobulin-like fold YPN_2675 IPR001829 Pili assembly chaperone, bacterial YPN_2675 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPN_2677 IPR035182 Protein of unknown function PsaF YPN_2678 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_2678 IPR001867 OmpR/PhoB-type DNA-binding domain YPN_2678 IPR016032 Signal transduction response regulator, C-terminal effector YPN_2679 IPR003352 Phosphotransferase system, EIIC YPN_2679 IPR013011 Phosphotransferase system, EIIB component, type 2 YPN_2679 IPR036095 PTS system IIB component-like superfamily YPN_2679 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPN_2679 IPR013014 Phosphotransferase system, EIIC component, type 2 YPN_2679 IPR003353 Phosphotransferase system, fructose-specific IIB subunit YPN_2679 IPR006327 Phosphotransferase system, fructose IIC component YPN_2680 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPN_2680 IPR017583 Tagatose/fructose phosphokinase YPN_2680 IPR029056 Ribokinase-like YPN_2680 IPR011611 Carbohydrate kinase PfkB YPN_2680 IPR022463 Fructose 1-phosphate kinase YPN_2681 IPR000032 Phosphocarrier protein HPr-like YPN_2681 IPR002178 PTS EIIA type-2 domain YPN_2681 IPR002114 Phosphotransferase system, HPr serine phosphorylation site YPN_2681 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YPN_2681 IPR016152 Phosphotransferase/anion transporter YPN_2681 IPR035895 HPr-like superfamily YPN_2682 IPR015797 NUDIX hydrolase-like domain superfamily YPN_2682 IPR020084 NUDIX hydrolase, conserved site YPN_2682 IPR020476 NUDIX hydrolase YPN_2682 IPR000086 NUDIX hydrolase domain YPN_2683 IPR001851 ABC transporter, permease YPN_2684 IPR003593 AAA+ ATPase domain YPN_2684 IPR015861 ABC transporter, ribose import, RbsA YPN_2684 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2684 IPR003439 ABC transporter-like YPN_2684 IPR017871 ABC transporter, conserved site YPN_2686 IPR037171 NagB/RpiA transferase-like YPN_2686 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup YPN_2686 IPR004788 Ribose 5-phosphate isomerase, type A YPN_2687 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPN_2687 IPR000577 Carbohydrate kinase, FGGY YPN_2687 IPR006000 Xylulokinase YPN_2687 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPN_2687 IPR018483 Carbohydrate kinase, FGGY, conserved site YPN_2688 IPR015590 Aldehyde dehydrogenase domain YPN_2688 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPN_2688 IPR016160 Aldehyde dehydrogenase, cysteine active site YPN_2688 IPR016161 Aldehyde/histidinol dehydrogenase YPN_2688 IPR010102 Succinate semialdehyde dehydrogenase YPN_2688 IPR016163 Aldehyde dehydrogenase, C-terminal YPN_2688 IPR016162 Aldehyde dehydrogenase, N-terminal YPN_2690 IPR036291 NAD(P)-binding domain superfamily YPN_2690 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPN_2690 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPN_2690 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPN_2690 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPN_2690 IPR002912 ACT domain YPN_2690 IPR029009 Allosteric substrate binding domain superfamily YPN_2690 IPR006236 D-3-phosphoglycerate dehydrogenase YPN_2691 IPR036291 NAD(P)-binding domain superfamily YPN_2691 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPN_2691 IPR002347 Short-chain dehydrogenase/reductase SDR YPN_2692 IPR005358 Putative zinc- or iron-chelating domain containing protein YPN_2693 IPR018227 Amino acid/polyamine transporter 2 YPN_2693 IPR013059 Tryptophan/tyrosine transporter YPN_2694 IPR012340 Nucleic acid-binding, OB-fold YPN_2694 IPR014722 Ribosomal protein L2, domain 2 YPN_2694 IPR008991 Translation protein SH3-like domain superfamily YPN_2694 IPR013852 Translation elongation factor P/YeiP, conserved site YPN_2694 IPR015365 Elongation factor P, C-terminal YPN_2694 IPR001059 Translation elongation factor P/YeiP, central YPN_2694 IPR020599 Translation elongation factor P/YeiP YPN_2694 IPR013185 Translation elongation factor, KOW-like YPN_2694 IPR011897 Translation elongation factor P-like, YeiP YPN_2695 IPR036237 Xylose isomerase-like superfamily YPN_2695 IPR004628 Mannonate dehydratase YPN_2696 IPR023027 Mannitol dehydrogenase, conserved site YPN_2696 IPR013131 Mannitol dehydrogenase, N-terminal YPN_2696 IPR000669 Mannitol dehydrogenase YPN_2696 IPR013118 Mannitol dehydrogenase, C-terminal YPN_2696 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPN_2696 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPN_2696 IPR036291 NAD(P)-binding domain superfamily YPN_2697 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_2697 IPR000524 Transcription regulator HTH, GntR YPN_2697 IPR008920 Transcription regulator FadR/GntR, C-terminal YPN_2697 IPR011711 GntR, C-terminal YPN_2697 IPR036390 Winged helix DNA-binding domain superfamily YPN_2699 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2699 IPR003495 CobW/HypB/UreG, nucleotide-binding domain YPN_2699 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal YPN_2700 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YPN_2700 IPR032908 Lipid A 1-diphosphate synthase YPN_2700 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily YPN_2701 IPR000064 Endopeptidase, NLPC/P60 domain YPN_2701 IPR038765 Papain-like cysteine peptidase superfamily YPN_2702 IPR035919 EAL domain superfamily YPN_2702 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain YPN_2702 IPR001633 EAL domain YPN_2703 IPR039424 Solute-binding protein family 5 YPN_2703 IPR030678 Peptide/nickel binding protein, MppA-type YPN_2703 IPR000914 Solute-binding protein family 5 domain YPN_2704 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_2704 IPR035906 MetI-like superfamily YPN_2705 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPN_2705 IPR035906 MetI-like superfamily YPN_2705 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_2706 IPR003593 AAA+ ATPase domain YPN_2706 IPR003439 ABC transporter-like YPN_2706 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2706 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPN_2706 IPR017871 ABC transporter, conserved site YPN_2707 IPR020489 Uncharacterised protein family YejG YPN_2709 IPR004812 Drug resistance transporter Bcr/CmlA subfamily YPN_2709 IPR011701 Major facilitator superfamily YPN_2709 IPR020846 Major facilitator superfamily domain YPN_2709 IPR004734 Multidrug resistance protein YPN_2709 IPR036259 MFS transporter superfamily YPN_2710 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain YPN_2710 IPR006145 Pseudouridine synthase, RsuA/RluA YPN_2710 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F YPN_2710 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site YPN_2710 IPR002942 RNA-binding S4 domain YPN_2710 IPR036986 RNA-binding S4 domain superfamily YPN_2710 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPN_2711 IPR011332 Zinc-binding ribosomal protein YPN_2711 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2711 IPR001650 Helicase, C-terminal YPN_2711 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPN_2711 IPR006935 Helicase/UvrB, N-terminal YPN_2712 IPR020055 Ribosomal protein L25, short-form YPN_2712 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily YPN_2712 IPR029751 Ribosomal protein L25 YPN_2712 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal YPN_2713 IPR002686 Transposase IS200-like YPN_2713 IPR036515 Transposase IS200-like superfamily YPN_2714 IPR007358 Nucleoid-associated protein NdpA YPN_2715 IPR009857 Uncharacterised protein family UPF0352 YPN_2715 IPR023202 YejL-like superfamily YPN_2716 IPR000917 Sulfatase, N-terminal YPN_2716 IPR012159 Inner membrane protein YejM YPN_2716 IPR024588 Inner membrane protein YejM, N-terminal YPN_2716 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPN_2718 IPR008514 Type VI secretion system effector, Hcp YPN_2718 IPR003615 HNH nuclease YPN_2718 IPR036624 Hcp1-like superfamily YPN_2722 IPR001360 Glycoside hydrolase family 1 YPN_2722 IPR018120 Glycoside hydrolase family 1, active site YPN_2722 IPR017853 Glycoside hydrolase superfamily YPN_2722 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site YPN_2723 IPR000281 Helix-turn-helix protein RpiR YPN_2723 IPR035472 RpiR-like, SIS domain YPN_2723 IPR001347 Sugar isomerase (SIS) YPN_2723 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_2723 IPR009057 Homeobox-like domain superfamily YPN_2724 IPR011083 Phage tail collar domain YPN_2724 IPR037053 Phage tail collar domain superfamily YPN_2727 IPR006949 Baseplate protein J-like YPN_2736 IPR035089 Tail sheath protein, subtilisin-like domain YPN_2736 IPR020287 Tail sheath protein, C-terminal domain YPN_2736 IPR007067 Tail sheath protein YPN_2740 IPR026040 Hydroxypyruvate isomerase-like YPN_2740 IPR013022 Xylose isomerase-like, TIM barrel domain YPN_2740 IPR036237 Xylose isomerase-like superfamily YPN_2741 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPN_2741 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_2741 IPR036390 Winged helix DNA-binding domain superfamily YPN_2741 IPR037171 NagB/RpiA transferase-like YPN_2741 IPR001034 DeoR-type HTH domain YPN_2741 IPR014036 DeoR C-terminal sensor domain YPN_2742 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPN_2742 IPR001303 Class II aldolase/adducin N-terminal YPN_2743 IPR010737 Four-carbon acid sugar kinase, N-terminal domain YPN_2743 IPR031475 Nucleotide-binding C-terminal domain YPN_2743 IPR042213 Nucleotide-binding, C-terminal domain superfamily YPN_2743 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily YPN_2744 IPR010534 Bacteriophage 933W, GpQ YPN_2745 IPR039418 LexA-like YPN_2745 IPR015927 Peptidase S24/S26A/S26B/S26C YPN_2745 IPR036286 LexA/Signal peptidase-like superfamily YPN_2745 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPN_2745 IPR001387 Cro/C1-type helix-turn-helix domain YPN_2747 IPR036687 DinI-like superfamily YPN_2747 IPR010391 DNA damage-inducible protein DinI-like YPN_2748 IPR020079 Peptidase A26, omptin, conserved site YPN_2748 IPR020080 Outer membrane adhesin/peptidase omptin YPN_2748 IPR000036 Peptidase A26, omptin YPN_2749 IPR000727 Target SNARE coiled-coil homology domain YPN_2749 IPR033479 Double Cache domain 1 YPN_2749 IPR003660 HAMP domain YPN_2749 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPN_2749 IPR029151 Periplasmic sensor-like domain superfamily YPN_2749 IPR004090 Chemotaxis methyl-accepting receptor YPN_2750 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPN_2750 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D YPN_2750 IPR001279 Metallo-beta-lactamase YPN_2751 IPR036259 MFS transporter superfamily YPN_2751 IPR018043 Sodium:galactoside symporter, conserved site YPN_2751 IPR039672 Lactose permease-like YPN_2751 IPR001927 Sodium:galactoside symporter YPN_2753 IPR012338 Beta-lactamase/transpeptidase-like YPN_2753 IPR001466 Beta-lactamase-related YPN_2755 IPR001702 Porin, Gram-negative type YPN_2755 IPR013793 Porin, Gram-negative type, conserved site YPN_2755 IPR023614 Porin domain superfamily YPN_2755 IPR001897 Porin, gammaproteobacterial YPN_2756 IPR036259 MFS transporter superfamily YPN_2756 IPR020846 Major facilitator superfamily domain YPN_2756 IPR011701 Major facilitator superfamily YPN_2757 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPN_2757 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_2757 IPR005467 Histidine kinase domain YPN_2757 IPR038616 Phosphotransferase RcsD, RcsD-ABL domain superfamily YPN_2757 IPR032306 Phosphotransferase RcsD, RcsD-ABL domain YPN_2757 IPR003594 Histidine kinase/HSP90-like ATPase YPN_2757 IPR036641 HPT domain superfamily YPN_2757 IPR030861 Phosphotransferase RcsD YPN_2758 IPR030861 Phosphotransferase RcsD YPN_2758 IPR036641 HPT domain superfamily YPN_2758 IPR005467 Histidine kinase domain YPN_2758 IPR032306 Phosphotransferase RcsD, RcsD-ABL domain YPN_2758 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_2758 IPR003594 Histidine kinase/HSP90-like ATPase YPN_2758 IPR038616 Phosphotransferase RcsD, RcsD-ABL domain superfamily YPN_2758 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPN_2759 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_2759 IPR000792 Transcription regulator LuxR, C-terminal YPN_2759 IPR011006 CheY-like superfamily YPN_2759 IPR016032 Signal transduction response regulator, C-terminal effector YPN_2759 IPR030864 Transcriptional regulatory protein RcsB YPN_2759 IPR001789 Signal transduction response regulator, receiver domain YPN_2760 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPN_2760 IPR038388 RcsC, C-terminal domain superfamily YPN_2760 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_2760 IPR030856 Sensor histidine kinase RcsC YPN_2760 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPN_2760 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPN_2760 IPR005467 Histidine kinase domain YPN_2760 IPR019017 Signal transduction histidine kinase RcsC, alpha-beta loop, C-terminal YPN_2760 IPR003594 Histidine kinase/HSP90-like ATPase YPN_2760 IPR011006 CheY-like superfamily YPN_2760 IPR001789 Signal transduction response regulator, receiver domain YPN_2761 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily YPN_2761 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta YPN_2761 IPR005743 DNA gyrase, subunit A YPN_2761 IPR013760 DNA topoisomerase, type IIA-like domain superfamily YPN_2761 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal YPN_2761 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat YPN_2761 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal YPN_2762 IPR010233 Ubiquinone biosynthesis O-methyltransferase YPN_2762 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_2763 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal YPN_2763 IPR039718 Ribonucleoside-diphosphate reductase large subunit YPN_2763 IPR005144 ATP-cone domain YPN_2763 IPR013509 Ribonucleotide reductase large subunit, N-terminal YPN_2763 IPR000788 Ribonucleotide reductase large subunit, C-terminal YPN_2763 IPR013346 Ribonucleotide reductase, class I , alpha subunit YPN_2764 IPR012348 Ribonucleotide reductase-like YPN_2764 IPR033909 Ribonucleotide reductase small subunit YPN_2764 IPR000358 Ribonucleotide reductase small subunit family YPN_2764 IPR030475 Ribonucleotide reductase small subunit, acitve site YPN_2764 IPR009078 Ferritin-like superfamily YPN_2765 IPR036010 2Fe-2S ferredoxin-like superfamily YPN_2765 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPN_2765 IPR012675 Beta-grasp domain superfamily YPN_2765 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPN_2766 IPR023084 Proteinase inhibitor I11, ecotin, gammaproteobacteria YPN_2766 IPR005658 Proteinase inhibitor I11, ecotin YPN_2766 IPR036198 Ecotin superfamily YPN_2767 IPR036425 MoaB/Mog-like domain superfamily YPN_2767 IPR001453 MoaB/Mog domain YPN_2767 IPR036653 CinA-like, C-terminal YPN_2767 IPR008135 Competence-induced protein CinA YPN_2768 IPR018227 Amino acid/polyamine transporter 2 YPN_2768 IPR013061 Tryptophan/tryrosine permease, conserved site YPN_2768 IPR013059 Tryptophan/tyrosine transporter YPN_2769 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPN_2769 IPR023614 Porin domain superfamily YPN_2769 IPR009998 YfaZ YPN_2770 IPR010582 Catalase immune-responsive domain YPN_2770 IPR037060 Catalase core domain superfamily YPN_2770 IPR018028 Catalase, mono-functional, haem-containing YPN_2770 IPR040333 Catalase, clade 3 YPN_2770 IPR024708 Catalase active site YPN_2770 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 YPN_2770 IPR011614 Catalase core domain YPN_2770 IPR002226 Catalase haem-binding site YPN_2770 IPR020835 Catalase superfamily YPN_2771 IPR006555 ATP-dependent helicase, C-terminal YPN_2771 IPR010614 DEAD2 YPN_2771 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2771 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type YPN_2771 IPR006554 Helicase-like, DEXD box c2 type YPN_2771 IPR039000 ATP-dependent DNA helicase DinG YPN_2771 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPN_2771 IPR001650 Helicase, C-terminal YPN_2772 IPR013793 Porin, Gram-negative type, conserved site YPN_2772 IPR001702 Porin, Gram-negative type YPN_2772 IPR001897 Porin, gammaproteobacterial YPN_2772 IPR023614 Porin domain superfamily YPN_2772 IPR033900 Porin domain, Gram-negative type YPN_2773 IPR004779 Carboxylate/Amino Acid/Amine Transporter YPN_2773 IPR000620 EamA domain YPN_2775 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal YPN_2775 IPR000310 Orn/Lys/Arg decarboxylase, major domain YPN_2775 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_2775 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily YPN_2775 IPR015424 Pyridoxal phosphate-dependent transferase YPN_2775 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_2775 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal YPN_2775 IPR011193 Ornithine/lysine/arginine decarboxylase YPN_2776 IPR002293 Amino acid/polyamine transporter I YPN_2777 IPR035906 MetI-like superfamily YPN_2777 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_2778 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2778 IPR017871 ABC transporter, conserved site YPN_2778 IPR003439 ABC transporter-like YPN_2778 IPR003593 AAA+ ATPase domain YPN_2779 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_2779 IPR035906 MetI-like superfamily YPN_2780 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain YPN_2781 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain YPN_2782 IPR001763 Rhodanese-like domain YPN_2782 IPR036873 Rhodanese-like domain superfamily YPN_2782 IPR001307 Thiosulphate sulfurtransferase, conserved site YPN_2785 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2785 IPR017871 ABC transporter, conserved site YPN_2785 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein YPN_2785 IPR003439 ABC transporter-like YPN_2785 IPR003593 AAA+ ATPase domain YPN_2786 IPR005876 Cobalt transport protein ATP-binding subunit YPN_2786 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2786 IPR017871 ABC transporter, conserved site YPN_2786 IPR003439 ABC transporter-like YPN_2786 IPR003593 AAA+ ATPase domain YPN_2787 IPR001851 ABC transporter, permease YPN_2788 IPR001851 ABC transporter, permease YPN_2789 IPR003593 AAA+ ATPase domain YPN_2789 IPR009057 Homeobox-like domain superfamily YPN_2789 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2789 IPR002197 DNA binding HTH domain, Fis-type YPN_2789 IPR028082 Periplasmic binding protein-like I YPN_2789 IPR002078 RNA polymerase sigma factor 54 interaction domain YPN_2789 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPN_2789 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPN_2789 IPR025944 Sigma-54 interaction domain, conserved site YPN_2789 IPR000014 PAS domain YPN_2790 IPR009921 Domain of unknown function DUF1456 YPN_2791 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_2791 IPR035906 MetI-like superfamily YPN_2791 IPR005769 ABC transporter, permease PhnE/PtxC YPN_2792 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_2792 IPR035906 MetI-like superfamily YPN_2792 IPR005769 ABC transporter, permease PhnE/PtxC YPN_2793 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein YPN_2794 IPR003439 ABC transporter-like YPN_2794 IPR012693 ABC transporter, phosphonate import, PhnC YPN_2794 IPR017871 ABC transporter, conserved site YPN_2794 IPR003593 AAA+ ATPase domain YPN_2794 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2795 IPR007341 Transglycosylase-associated protein YPN_2798 IPR003615 HNH nuclease YPN_2798 IPR002711 HNH endonuclease YPN_2799 IPR023577 CYTH domain YPN_2799 IPR033469 CYTH-like domain superfamily YPN_2799 IPR008173 Adenylyl cyclase CyaB YPN_2800 IPR006094 FAD linked oxidase, N-terminal YPN_2800 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal YPN_2800 IPR016164 FAD-linked oxidase-like, C-terminal YPN_2800 IPR016169 FAD-binding, type PCMH, subdomain 2 YPN_2800 IPR016167 FAD-binding, type PCMH, subdomain 1 YPN_2800 IPR036318 FAD-binding, type PCMH-like superfamily YPN_2800 IPR016166 FAD-binding domain, PCMH-type YPN_2800 IPR012256 D-lactate dehydrogenase YPN_2800 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 YPN_2800 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 YPN_2801 IPR012338 Beta-lactamase/transpeptidase-like YPN_2801 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A YPN_2801 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal YPN_2803 IPR018517 tRNA-dihydrouridine synthase, conserved site YPN_2803 IPR032886 tRNA-dihydrouridine(16) synthase YPN_2803 IPR035587 DUS-like, FMN-binding domain YPN_2803 IPR042270 tRNA-dihydrouridine(16) synthase, C-terminal YPN_2803 IPR001269 tRNA-dihydrouridine synthase YPN_2803 IPR013785 Aldolase-type TIM barrel YPN_2806 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2806 IPR001650 Helicase, C-terminal YPN_2806 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPN_2806 IPR014014 RNA helicase, DEAD-box type, Q motif YPN_2806 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPN_2806 IPR011545 DEAD/DEAH box helicase domain YPN_2806 IPR028622 ATP-dependent RNA helicase RhlE YPN_2807 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal YPN_2807 IPR003346 Transposase, IS116/IS110/IS902 YPN_2808 IPR001207 Transposase, mutator type YPN_2812 IPR009057 Homeobox-like domain superfamily YPN_2812 IPR012337 Ribonuclease H-like superfamily YPN_2812 IPR038717 Tc1-like transposase, DDE domain YPN_2812 IPR025959 Winged helix-turn helix domain YPN_2813 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal YPN_2813 IPR003346 Transposase, IS116/IS110/IS902 YPN_2814 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPN_2814 IPR028622 ATP-dependent RNA helicase RhlE YPN_2814 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2814 IPR001650 Helicase, C-terminal YPN_2814 IPR011545 DEAD/DEAH box helicase domain YPN_2814 IPR014014 RNA helicase, DEAD-box type, Q motif YPN_2814 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPN_2815 IPR001647 DNA-binding HTH domain, TetR-type YPN_2815 IPR009057 Homeobox-like domain superfamily YPN_2815 IPR015292 Transcription regulator YbiH, C-terminal YPN_2815 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YPN_2815 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPN_2816 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPN_2816 IPR022936 Uncharacterised protein family UPF0194, membrane protein YbhG YPN_2817 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2817 IPR017871 ABC transporter, conserved site YPN_2817 IPR003439 ABC transporter-like YPN_2817 IPR003593 AAA+ ATPase domain YPN_2818 IPR000412 ABC-2 transporter YPN_2819 IPR000412 ABC-2 transporter YPN_2822 IPR000847 Transcription regulator HTH, LysR YPN_2822 IPR005119 LysR, substrate-binding YPN_2822 IPR036390 Winged helix DNA-binding domain superfamily YPN_2822 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_2823 IPR013785 Aldolase-type TIM barrel YPN_2823 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal YPN_2824 IPR025944 Sigma-54 interaction domain, conserved site YPN_2824 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPN_2824 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPN_2824 IPR002078 RNA polymerase sigma factor 54 interaction domain YPN_2824 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2824 IPR002197 DNA binding HTH domain, Fis-type YPN_2824 IPR009057 Homeobox-like domain superfamily YPN_2824 IPR001789 Signal transduction response regulator, receiver domain YPN_2824 IPR011006 CheY-like superfamily YPN_2824 IPR003593 AAA+ ATPase domain YPN_2825 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPN_2825 IPR003594 Histidine kinase/HSP90-like ATPase YPN_2825 IPR029151 Periplasmic sensor-like domain superfamily YPN_2825 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPN_2825 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_2825 IPR005467 Histidine kinase domain YPN_2825 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPN_2826 IPR025961 Heavy-metal resistance protein YPN_2827 IPR020846 Major facilitator superfamily domain YPN_2827 IPR036259 MFS transporter superfamily YPN_2827 IPR004740 Nucleoside:H+ symporter YPN_2829 IPR020846 Major facilitator superfamily domain YPN_2829 IPR036259 MFS transporter superfamily YPN_2829 IPR004740 Nucleoside:H+ symporter YPN_2830 IPR010943 Xanthosine phosphorylase YPN_2830 IPR018099 Purine phosphorylase, family 2, conserved site YPN_2830 IPR011268 Purine nucleoside phosphorylase YPN_2830 IPR035994 Nucleoside phosphorylase superfamily YPN_2830 IPR000845 Nucleoside phosphorylase domain YPN_2832 IPR005119 LysR, substrate-binding YPN_2832 IPR000847 Transcription regulator HTH, LysR YPN_2832 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_2832 IPR036390 Winged helix DNA-binding domain superfamily YPN_2832 IPR037409 HTH-type transcriptional regulator XapR, PBP2 domain YPN_2833 IPR000060 BCCT transporter family YPN_2833 IPR018093 BCCT transporter, conserved site YPN_2834 IPR009057 Homeobox-like domain superfamily YPN_2834 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YPN_2834 IPR039538 BetI-type transcriptional repressor, C-terminal YPN_2834 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPN_2834 IPR017757 Transcriptional repressor BetI YPN_2834 IPR001647 DNA-binding HTH domain, TetR-type YPN_2835 IPR016161 Aldehyde/histidinol dehydrogenase YPN_2835 IPR016163 Aldehyde dehydrogenase, C-terminal YPN_2835 IPR015590 Aldehyde dehydrogenase domain YPN_2835 IPR016162 Aldehyde dehydrogenase, N-terminal YPN_2835 IPR016160 Aldehyde dehydrogenase, cysteine active site YPN_2835 IPR011264 Betaine aldehyde dehydrogenase YPN_2835 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPN_2836 IPR011533 Oxygen-dependent choline dehydrogenase YPN_2836 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_2836 IPR027424 Glucose Oxidase, domain 2 YPN_2836 IPR012132 Glucose-methanol-choline oxidoreductase YPN_2836 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal YPN_2836 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal YPN_2837 IPR002686 Transposase IS200-like YPN_2837 IPR036515 Transposase IS200-like superfamily YPN_2838 IPR006214 Bax inhibitor 1-related YPN_2839 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily YPN_2839 IPR003448 Molybdopterin biosynthesis MoaE YPN_2840 IPR012675 Beta-grasp domain superfamily YPN_2840 IPR003749 Sulfur carrier ThiS/MoaD-like YPN_2840 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp YPN_2841 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily YPN_2841 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain YPN_2841 IPR023045 Molybdenum cofactor biosynthesis C YPN_2842 IPR007197 Radical SAM YPN_2842 IPR010505 Molybdenum cofactor synthesis C-terminal YPN_2842 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site YPN_2842 IPR006638 Elp3/MiaB/NifB YPN_2842 IPR013785 Aldolase-type TIM barrel YPN_2842 IPR013483 Molybdenum cofactor biosynthesis protein A YPN_2843 IPR010119 Gluconeogenesis factor YPN_2843 IPR038136 Gluconeogenesis factor superfamily YPN_2843 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 YPN_2844 IPR018668 DNA-binding protein VF530-like YPN_2844 IPR036361 SAP domain superfamily YPN_2845 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2845 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPN_2845 IPR006935 Helicase/UvrB, N-terminal YPN_2845 IPR024759 UvrB, YAD/RRR-motif-containing domain YPN_2845 IPR041471 UvrB, interaction domain YPN_2845 IPR001943 UVR domain YPN_2845 IPR036876 UVR domain superfamily YPN_2845 IPR001650 Helicase, C-terminal YPN_2845 IPR004807 UvrABC system, subunit B YPN_2847 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2847 IPR004472 Dethiobiotin synthase BioD YPN_2848 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_2848 IPR013216 Methyltransferase type 11 YPN_2848 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC YPN_2849 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_2849 IPR015424 Pyridoxal phosphate-dependent transferase YPN_2849 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type YPN_2849 IPR004839 Aminotransferase, class I/classII YPN_2849 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site YPN_2849 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_2849 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria YPN_2850 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB YPN_2850 IPR024177 Biotin synthase YPN_2850 IPR006638 Elp3/MiaB/NifB YPN_2850 IPR013785 Aldolase-type TIM barrel YPN_2850 IPR007197 Radical SAM YPN_2850 IPR010722 Biotin and thiamin synthesis-associated domain YPN_2851 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_2851 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_2851 IPR015424 Pyridoxal phosphate-dependent transferase YPN_2851 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA YPN_2851 IPR005814 Aminotransferase class-III YPN_2852 IPR015943 WD40/YVTN repeat-like-containing domain superfamily YPN_2852 IPR011045 Nitrous oxide reductase, N-terminal YPN_2852 IPR019405 Lactonase, 7-bladed beta propeller YPN_2852 IPR022528 6-phosphogluconolactonase, YbhE-type YPN_2853 IPR006379 HAD-superfamily hydrolase, subfamily IIB YPN_2853 IPR023214 HAD superfamily YPN_2853 IPR000150 Cof family YPN_2853 IPR036412 HAD-like superfamily YPN_2854 IPR015852 ABC transporter, molybdenum import, ModC YPN_2854 IPR003593 AAA+ ATPase domain YPN_2854 IPR003439 ABC transporter-like YPN_2854 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2854 IPR005116 Transport-associated OB, type 1 YPN_2854 IPR017871 ABC transporter, conserved site YPN_2854 IPR011868 Molybdate ABC transporter, ATP-binding protein YPN_2854 IPR008995 Molybdate/tungstate binding, C-terminal YPN_2854 IPR004606 Molybdenum-pterin binding YPN_2855 IPR035906 MetI-like superfamily YPN_2855 IPR011867 Molybdate ABC transporter, permease protein YPN_2855 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_2856 IPR005950 Molybdate ABC transporter, substrate-binding protein YPN_2857 IPR019702 Multidrug efflux pump accessory protein AcrZ YPN_2858 IPR036390 Winged helix DNA-binding domain superfamily YPN_2858 IPR008995 Molybdate/tungstate binding, C-terminal YPN_2858 IPR004606 Molybdenum-pterin binding YPN_2858 IPR005116 Transport-associated OB, type 1 YPN_2858 IPR000847 Transcription regulator HTH, LysR YPN_2858 IPR003725 Molybdenum-binding protein ModE, N-terminal YPN_2858 IPR016462 Molybdate-dependent transcriptional regulator ModE YPN_2858 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_2859 IPR003439 ABC transporter-like YPN_2859 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2859 IPR003593 AAA+ ATPase domain YPN_2861 IPR016040 NAD(P)-binding domain YPN_2861 IPR036291 NAD(P)-binding domain superfamily YPN_2861 IPR005886 UDP-glucose 4-epimerase YPN_2862 IPR001937 Galactose-1-phosphate uridyl transferase, class I YPN_2862 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site YPN_2862 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal YPN_2862 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal YPN_2862 IPR036265 HIT-like superfamily YPN_2863 IPR020568 Ribosomal protein S5 domain 2-type fold YPN_2863 IPR006203 GHMP kinase, ATP-binding, conserved site YPN_2863 IPR006204 GHMP kinase N-terminal domain YPN_2863 IPR036554 GHMP kinase, C-terminal domain superfamily YPN_2863 IPR006206 Mevalonate/galactokinase YPN_2863 IPR019539 Galactokinase galactose-binding domain YPN_2863 IPR013750 GHMP kinase, C-terminal domain YPN_2863 IPR000705 Galactokinase YPN_2863 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPN_2863 IPR022963 Galactokinase, bacterial YPN_2863 IPR019741 Galactokinase, conserved site YPN_2865 IPR014718 Glycoside hydrolase-type carbohydrate-binding YPN_2865 IPR013458 Aldose 1-epimerase, bacterial YPN_2865 IPR015443 Aldose 1-epimerase YPN_2865 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase YPN_2865 IPR018052 Aldose 1-epimerase, conserved site YPN_2865 IPR011013 Galactose mutarotase-like domain superfamily YPN_2867 IPR013078 Histidine phosphatase superfamily, clade-1 YPN_2867 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site YPN_2867 IPR005952 Phosphoglycerate mutase 1 YPN_2867 IPR029033 Histidine phosphatase superfamily YPN_2868 IPR006218 DAHP synthetase I/KDSA YPN_2868 IPR013785 Aldolase-type TIM barrel YPN_2868 IPR006219 DHAP synthase, class 1 YPN_2869 IPR002524 Cation efflux protein YPN_2869 IPR036837 Cation efflux protein, cytoplasmic domain superfamily YPN_2869 IPR027469 Cation efflux transmembrane domain superfamily YPN_2869 IPR023500 Zinc transporter ZitB YPN_2870 IPR006419 Nicotinamide mononucleotide transporter PnuC YPN_2871 IPR036094 Quinolinate synthetase A superfamily YPN_2871 IPR003473 Quinolinate synthetase A YPN_2871 IPR023513 Quinolinate synthase A, type 1 YPN_2872 IPR032519 YbgF, trimerisation domain YPN_2872 IPR019734 Tetratricopeptide repeat YPN_2872 IPR034706 Cell division coordinator CpoB YPN_2872 IPR014162 Cell division coordinator CpoB, C-terminal YPN_2872 IPR013026 Tetratricopeptide repeat-containing domain YPN_2872 IPR011990 Tetratricopeptide-like helical domain superfamily YPN_2873 IPR039001 Peptidoglycan-associated lipoprotein YPN_2873 IPR036737 OmpA-like domain superfamily YPN_2873 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal YPN_2873 IPR006690 Outer membrane protein, OmpA-like, conserved site YPN_2873 IPR006665 OmpA-like domain YPN_2873 IPR006664 Outer membrane protein, bacterial YPN_2874 IPR007195 TolB, N-terminal YPN_2874 IPR014167 Tol-Pal system protein TolB YPN_2874 IPR036752 TolB, N-terminal domain superfamily YPN_2874 IPR011042 Six-bladed beta-propeller, TolB-like YPN_2874 IPR011659 WD40-like Beta Propeller YPN_2875 IPR014161 Tol-Pal system, TolA YPN_2875 IPR014161 Tol-Pal system, TolA YPN_2876 IPR014168 Tol-Pal system protein TolR YPN_2876 IPR003400 Biopolymer transport protein ExbD/TolR YPN_2877 IPR002898 MotA/TolQ/ExbB proton channel YPN_2877 IPR014163 Tol-Pal system, TolQ YPN_2878 IPR006683 Thioesterase domain YPN_2878 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase YPN_2878 IPR029069 HotDog domain superfamily YPN_2878 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family YPN_2878 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site YPN_2879 IPR011846 Cyd operon protein YbgE YPN_2880 IPR003317 Cytochrome ubiquinol oxidase subunit 2 YPN_2881 IPR002585 Cytochrome ubiquinol oxidase subunit 1 YPN_2882 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site YPN_2882 IPR005810 Succinyl-CoA ligase, alpha subunit YPN_2882 IPR016102 Succinyl-CoA synthetase-like YPN_2882 IPR003781 CoA-binding YPN_2882 IPR005811 ATP-citrate lyase/succinyl-CoA ligase YPN_2882 IPR036291 NAD(P)-binding domain superfamily YPN_2882 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site YPN_2883 IPR013815 ATP-grasp fold, subdomain 1 YPN_2883 IPR011761 ATP-grasp fold YPN_2883 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type YPN_2883 IPR005809 Succinate--CoA synthetase, beta subunit YPN_2883 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site YPN_2883 IPR005811 ATP-citrate lyase/succinyl-CoA ligase YPN_2883 IPR016102 Succinyl-CoA synthetase-like YPN_2884 IPR006255 Dihydrolipoamide succinyltransferase YPN_2884 IPR011053 Single hybrid motif YPN_2884 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site YPN_2884 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain YPN_2884 IPR000089 Biotin/lipoyl attachment YPN_2884 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YPN_2884 IPR036625 E3-binding domain superfamily YPN_2884 IPR004167 Peripheral subunit-binding domain YPN_2885 IPR005475 Transketolase-like, pyrimidine-binding domain YPN_2885 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal YPN_2885 IPR001017 Dehydrogenase, E1 component YPN_2885 IPR042179 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily YPN_2885 IPR011603 2-oxoglutarate dehydrogenase E1 component YPN_2885 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain YPN_2885 IPR029061 Thiamin diphosphate-binding fold YPN_2886 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPN_2886 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPN_2886 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPN_2886 IPR012675 Beta-grasp domain superfamily YPN_2886 IPR009051 Alpha-helical ferredoxin YPN_2886 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein YPN_2886 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal YPN_2886 IPR036010 2Fe-2S ferredoxin-like superfamily YPN_2887 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily YPN_2887 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_2887 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain YPN_2887 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit YPN_2887 IPR011281 Succinate dehydrogenase, flavoprotein subunit YPN_2887 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily YPN_2887 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal YPN_2887 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site YPN_2888 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit YPN_2888 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor YPN_2888 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit YPN_2889 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site YPN_2889 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit YPN_2889 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit YPN_2889 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit YPN_2890 IPR010953 Citrate synthase, type I YPN_2890 IPR036969 Citrate synthase superfamily YPN_2890 IPR024176 Citrate synthase, bacterial-type YPN_2890 IPR019810 Citrate synthase active site YPN_2890 IPR002020 Citrate synthase YPN_2890 IPR016143 Citrate synthase-like, small alpha subdomain YPN_2890 IPR016142 Citrate synthase-like, large alpha subdomain YPN_2891 IPR013805 GrpE nucleotide exchange factor, coiled-coil YPN_2891 IPR000740 GrpE nucleotide exchange factor YPN_2891 IPR009012 GrpE nucleotide exchange factor, head YPN_2892 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal YPN_2892 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily YPN_2892 IPR002504 NAD kinase YPN_2892 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal YPN_2893 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2893 IPR003395 RecF/RecN/SMC, N-terminal YPN_2893 IPR004604 DNA recombination/repair protein RecN YPN_2894 IPR026592 Outer membrane protein assembly factor BamE YPN_2894 IPR037873 BamE-like YPN_2894 IPR007450 Lipoprotein SmpA/OmlA YPN_2895 IPR005346 RnfH protein YPN_2895 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp YPN_2895 IPR037021 RnfH superfamily YPN_2896 IPR005031 Coenzyme Q-binding protein COQ10, START domain YPN_2896 IPR023393 START-like domain superfamily YPN_2897 IPR020081 SsrA-binding protein, conserved site YPN_2897 IPR023620 Small protein B YPN_2897 IPR000037 SsrA-binding protein YPN_2899 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPN_2899 IPR002104 Integrase, catalytic domain YPN_2899 IPR013762 Integrase-like, catalytic domain superfamily YPN_2899 IPR025166 Integrase, DNA-binding domain YPN_2899 IPR010998 Integrase/recombinase, N-terminal YPN_2899 IPR038488 Integrase, DNA-binding domain superfamily YPN_2908 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2908 IPR038724 Regulatory protein RepA YPN_2910 IPR009241 Toxin HigB-like YPN_2910 IPR014056 Addiction module killer protein, predicted YPN_2912 IPR017894 HTH domain, IS21 transposase-type YPN_2912 IPR001584 Integrase, catalytic core YPN_2912 IPR006120 Resolvase, HTH domain YPN_2912 IPR012337 Ribonuclease H-like superfamily YPN_2912 IPR036397 Ribonuclease H superfamily YPN_2913 IPR002611 IstB-like ATP-binding protein YPN_2913 IPR003593 AAA+ ATPase domain YPN_2913 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_2913 IPR001270 ClpA/B family YPN_2913 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2915 IPR012681 Nucleobase cation symporter-1, NCS1 YPN_2915 IPR001248 Purine-cytosine permease YPN_2915 IPR038271 Purine-cytosine permease superfamily YPN_2916 IPR006309 DNA polymerase 3, epsilon subunit YPN_2916 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain YPN_2916 IPR012337 Ribonuclease H-like superfamily YPN_2916 IPR036397 Ribonuclease H superfamily YPN_2916 IPR013520 Exonuclease, RNase T/DNA polymerase III YPN_2917 IPR012337 Ribonuclease H-like superfamily YPN_2917 IPR036397 Ribonuclease H superfamily YPN_2917 IPR022892 Ribonuclease HI YPN_2917 IPR002156 Ribonuclease H domain YPN_2918 IPR026669 Arsenite methyltransferase-like YPN_2918 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_2918 IPR013216 Methyltransferase type 11 YPN_2919 IPR035680 Hydroxyacylglutathione hydrolase, MBL domain YPN_2919 IPR017782 Hydroxyacylglutathione hydrolase YPN_2919 IPR001279 Metallo-beta-lactamase YPN_2919 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPN_2919 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain YPN_2920 IPR036779 LysM domain superfamily YPN_2920 IPR023346 Lysozyme-like domain superfamily YPN_2920 IPR018392 LysM domain YPN_2920 IPR000189 Prokaryotic transglycosylase, active site YPN_2920 IPR008258 Transglycosylase SLT domain 1 YPN_2921 IPR036691 Endonuclease/exonuclease/phosphatase superfamily YPN_2921 IPR005135 Endonuclease/exonuclease/phosphatase YPN_2921 IPR022958 Uncharacterised protein family UPF0294 YPN_2923 IPR018170 Aldo/keto reductase, conserved site YPN_2923 IPR020471 Aldo/keto reductase YPN_2923 IPR023210 NADP-dependent oxidoreductase domain YPN_2923 IPR036812 NADP-dependent oxidoreductase domain superfamily YPN_2925 IPR036412 HAD-like superfamily YPN_2925 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase YPN_2925 IPR006543 Histidinol-phosphate phosphatase YPN_2925 IPR006549 HAD-superfamily hydrolase,subfamily IIIA YPN_2925 IPR023214 HAD superfamily YPN_2926 IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria YPN_2926 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2926 IPR018449 NIL domain YPN_2926 IPR003593 AAA+ ATPase domain YPN_2926 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain YPN_2926 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal YPN_2926 IPR017871 ABC transporter, conserved site YPN_2926 IPR003439 ABC transporter-like YPN_2926 IPR026253 Methionine import ATP-binding protein MetN YPN_2927 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_2927 IPR035906 MetI-like superfamily YPN_2928 IPR004872 Lipoprotein NlpA family YPN_2929 IPR030852 Outer membrane lipoprotein RcsF YPN_2930 IPR041369 TrmO, C-terminal YPN_2930 IPR036414 YaeB, N-terminal domain superfamily YPN_2930 IPR023368 Uncharacterised protein family UPF0066, conserved site YPN_2930 IPR036413 YaeB-like superfamily YPN_2930 IPR040372 YaeB-like YPN_2930 IPR023370 TrmO-like, N-terminal domain YPN_2931 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 YPN_2931 IPR006195 Aminoacyl-tRNA synthetase, class II YPN_2931 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain YPN_2931 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily YPN_2931 IPR004154 Anticodon-binding YPN_2931 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) YPN_2931 IPR033730 Prokaryote proline-tRNA ligase core domain YPN_2931 IPR036621 Anticodon-binding domain superfamily YPN_2931 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type YPN_2931 IPR002316 Proline-tRNA ligase, class IIa YPN_2932 IPR007298 Copper resistance lipoprotein NlpE YPN_2932 IPR038139 NlpE, C-terminal domain superfamily YPN_2932 IPR033450 NlpE, C-terminal OB domain YPN_2933 IPR000352 Peptide chain release factor class I YPN_2934 IPR038590 YaeQ superfamily YPN_2934 IPR009822 YaeQ YPN_2934 IPR011335 Restriction endonuclease type II-like YPN_2935 IPR009624 Uncharacterised protein family UPF0253 YPN_2936 IPR038626 Rof-like superfamily YPN_2936 IPR009778 Modulator of Rho-dependent transcription termination YPN_2936 IPR023534 Rof/RNase P-like YPN_2937 IPR008168 Cytochrome c, class IC YPN_2937 IPR036909 Cytochrome c-like domain superfamily YPN_2937 IPR009056 Cytochrome c-like domain YPN_2938 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal YPN_2938 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_2938 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal YPN_2938 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain YPN_2938 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal YPN_2938 IPR012094 tRNA(Ile)-lysidine synthase YPN_2939 IPR037478 YwkD-like domain YPN_2939 IPR037523 Vicinal oxygen chelate (VOC) domain YPN_2939 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain YPN_2939 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YPN_2940 IPR001095 Acetyl-CoA carboxylase, alpha subunit YPN_2940 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal YPN_2940 IPR029045 ClpP/crotonase-like domain superfamily YPN_2941 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain YPN_2941 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YPN_2941 IPR029460 DNA polymerase, helix-hairpin-helix motif YPN_2941 IPR003141 Polymerase/histidinol phosphatase, N-terminal YPN_2941 IPR004805 DNA polymerase III, alpha subunit YPN_2941 IPR016195 Polymerase/histidinol phosphatase-like YPN_2941 IPR040982 DNA polymerase III alpha subunit finger domain YPN_2941 IPR041931 Bacterial DNA polymerase III alpha subunit, thumb domain YPN_2941 IPR004013 PHP domain YPN_2942 IPR001352 Ribonuclease HII/HIII YPN_2942 IPR022898 Ribonuclease HII YPN_2942 IPR012337 Ribonuclease H-like superfamily YPN_2942 IPR024567 Ribonuclease HII/HIII domain YPN_2942 IPR036397 Ribonuclease H superfamily YPN_2943 IPR003835 Glycosyl transferase, family 19 YPN_2944 IPR011004 Trimeric LpxA-like superfamily YPN_2944 IPR001451 Hexapeptide repeat YPN_2944 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily YPN_2944 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal YPN_2944 IPR018357 Hexapeptide transferase, conserved site YPN_2944 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase YPN_2945 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YPN_2945 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ YPN_2945 IPR029069 HotDog domain superfamily YPN_2946 IPR011004 Trimeric LpxA-like superfamily YPN_2946 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD YPN_2946 IPR018357 Hexapeptide transferase, conserved site YPN_2946 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region YPN_2946 IPR001451 Hexapeptide repeat YPN_2947 IPR005632 Chaperone protein Skp YPN_2947 IPR024930 Skp domain superfamily YPN_2948 IPR010827 POTRA domain, BamA/TamA-like YPN_2948 IPR034746 POTRA domain YPN_2948 IPR023707 Outer membrane protein assembly factor BamA YPN_2948 IPR039910 Surface antigen D15-like YPN_2948 IPR000184 Bacterial surface antigen (D15) YPN_2949 IPR001478 PDZ domain YPN_2949 IPR041489 PDZ domain 6 YPN_2949 IPR036034 PDZ superfamily YPN_2949 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase YPN_2949 IPR008915 Peptidase M50 YPN_2950 IPR000374 Phosphatidate cytidylyltransferase YPN_2951 IPR036424 Decaprenyl diphosphate synthase-like superfamily YPN_2951 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site YPN_2951 IPR001441 Decaprenyl diphosphate synthase-like YPN_2952 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal YPN_2952 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal YPN_2952 IPR036291 NAD(P)-binding domain superfamily YPN_2952 IPR036169 DXP reductoisomerase, C-terminal domain superfamily YPN_2952 IPR026877 DXP reductoisomerase C-terminal domain YPN_2952 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase YPN_2953 IPR036191 RRF superfamily YPN_2953 IPR023584 Ribosome recycling factor domain YPN_2953 IPR002661 Ribosome recycling factor YPN_2954 IPR015963 Uridylate kinase, bacteria YPN_2954 IPR011817 Uridylate kinase YPN_2954 IPR001048 Aspartate/glutamate/uridylate kinase YPN_2954 IPR036393 Acetylglutamate kinase-like superfamily YPN_2956 IPR001816 Translation elongation factor EFTs/EF1B YPN_2956 IPR009060 UBA-like superfamily YPN_2956 IPR036402 Elongation factor Ts, dimerisation domain superfamily YPN_2956 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation YPN_2956 IPR018101 Translation elongation factor Ts, conserved site YPN_2957 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid YPN_2957 IPR018130 Ribosomal protein S2, conserved site YPN_2957 IPR001865 Ribosomal protein S2 YPN_2957 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily YPN_2958 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 YPN_2958 IPR036005 Creatinase/aminopeptidase-like YPN_2958 IPR000994 Peptidase M24 YPN_2958 IPR001714 Peptidase M24, methionine aminopeptidase YPN_2959 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme YPN_2959 IPR002912 ACT domain YPN_2959 IPR003607 HD/PDEase domain YPN_2959 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase YPN_2959 IPR002934 Polymerase, nucleotidyl transferase domain YPN_2959 IPR006674 HD domain YPN_2960 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily YPN_2960 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 YPN_2960 IPR001451 Hexapeptide repeat YPN_2960 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family YPN_2960 IPR018357 Hexapeptide transferase, conserved site YPN_2960 IPR011004 Trimeric LpxA-like superfamily YPN_2962 IPR020911 Uncharacterised protein family UPF0325 YPN_2963 IPR001094 Flavodoxin-like YPN_2963 IPR008254 Flavodoxin/nitric oxide synthase YPN_2963 IPR029039 Flavoprotein-like superfamily YPN_2964 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPN_2964 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YPN_2964 IPR006145 Pseudouridine synthase, RsuA/RluA YPN_2965 IPR036814 YqcC-like superfamily YPN_2965 IPR023376 YqcC-like domain YPN_2965 IPR007384 Protein of unknown function UCP006257 YPN_2966 IPR002686 Transposase IS200-like YPN_2966 IPR036515 Transposase IS200-like superfamily YPN_2967 IPR009948 Syd YPN_2967 IPR038228 Syd superfamily YPN_2968 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 YPN_2968 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal YPN_2968 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF YPN_2969 IPR027820 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH, N-terminal YPN_2969 IPR037153 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH-like superfamily YPN_2969 IPR031100 LOG family YPN_2969 IPR021826 Domain of unknown function DUF3412 YPN_2970 IPR022895 Flap endonuclease Xni YPN_2970 IPR029060 PIN-like domain superfamily YPN_2970 IPR008918 Helix-hairpin-helix motif, class 2 YPN_2970 IPR038969 Flap endonuclease YPN_2970 IPR020045 DNA polymerase I-like, H3TH domain YPN_2970 IPR002421 5'-3' exonuclease, N-terminal YPN_2970 IPR036279 5'-3' exonuclease, C-terminal domain superfamily YPN_2970 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal YPN_2971 IPR002877 Ribosomal RNA methyltransferase FtsJ domain YPN_2971 IPR040739 RlmM ferredoxin-like domain YPN_2971 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_2971 IPR011224 Ribosomal RNA large subunit methyltransferase M YPN_2972 IPR006696 Protein of unknown function DUF423 YPN_2973 IPR000847 Transcription regulator HTH, LysR YPN_2973 IPR005119 LysR, substrate-binding YPN_2973 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_2973 IPR036390 Winged helix DNA-binding domain superfamily YPN_2974 IPR015424 Pyridoxal phosphate-dependent transferase YPN_2974 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_2974 IPR022471 Cysteine desulphurase, catalytic subunit, CsdA YPN_2974 IPR000192 Aminotransferase class V domain YPN_2974 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_2974 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPN_2975 IPR003808 Fe-S metabolism associated domain, SufE-like YPN_2975 IPR017763 Cysteine desulfurase, sulphur acceptor subunit CsdE YPN_2976 IPR000594 THIF-type NAD/FAD binding fold YPN_2976 IPR035985 Ubiquitin-activating enzyme YPN_2977 IPR010611 3D domain YPN_2977 IPR026044 Membrane-bound lytic murein transglycosylase A YPN_2977 IPR034654 MltA, 3D domain YPN_2977 IPR005300 Lytic transglycosylase MltA, domain B YPN_2977 IPR036908 RlpA-like domain superfamily YPN_2978 IPR006311 Twin-arginine translocation pathway, signal sequence YPN_2978 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain YPN_2978 IPR021731 AMIN domain YPN_2979 IPR036393 Acetylglutamate kinase-like superfamily YPN_2979 IPR016181 Acyl-CoA N-acyltransferase YPN_2979 IPR001048 Aspartate/glutamate/uridylate kinase YPN_2979 IPR000182 GNAT domain YPN_2979 IPR033719 N-acetylglutamate synthase, kinase-like domain YPN_2979 IPR010167 Amino-acid N-acetyltransferase YPN_2980 IPR003593 AAA+ ATPase domain YPN_2980 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2980 IPR027785 UvrD-like helicase C-terminal domain YPN_2980 IPR041851 RecBCD enzyme subunit RecD, N-terminal domain YPN_2980 IPR006344 RecBCD enzyme subunit RecD YPN_2981 IPR014016 UvrD-like helicase, ATP-binding domain YPN_2981 IPR014017 UvrD-like DNA helicase, C-terminal YPN_2981 IPR000212 DNA helicase, UvrD/REP type YPN_2981 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type YPN_2981 IPR011604 Exonuclease, phage-type/RecB, C-terminal YPN_2981 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2981 IPR011335 Restriction endonuclease type II-like YPN_2981 IPR004586 RecBCD enzyme subunit RecB YPN_2981 IPR034739 UvrD/AddA helicase, N-terminal YPN_2982 IPR001431 Peptidase M16, zinc-binding site YPN_2982 IPR032632 Peptidase M16, middle/third domain YPN_2982 IPR007863 Peptidase M16, C-terminal YPN_2982 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like YPN_2982 IPR011765 Peptidase M16, N-terminal YPN_2983 IPR041500 RecC, C-terminal YPN_2983 IPR013986 DExx box DNA helicase domain superfamily YPN_2983 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_2983 IPR011335 Restriction endonuclease type II-like YPN_2983 IPR006697 RecBCD enzyme subunit RecC YPN_2988 IPR020940 Thymidylate synthase, active site YPN_2988 IPR000398 Thymidylate synthase YPN_2988 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily YPN_2988 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain YPN_2989 IPR001640 Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase Lgt YPN_2990 IPR006318 Phosphotransferase system, enzyme I-like YPN_2990 IPR029016 GAF-like domain superfamily YPN_2990 IPR008279 PEP-utilising enzyme, mobile domain YPN_2990 IPR018274 PEP-utilising enzyme, active site YPN_2990 IPR000121 PEP-utilising enzyme, C-terminal YPN_2990 IPR036637 Phosphohistidine domain superfamily YPN_2990 IPR003018 GAF domain YPN_2990 IPR023151 PEP-utilising enzyme, conserved site YPN_2990 IPR008731 Phosphotransferase system, enzyme I N-terminal YPN_2990 IPR036618 PtsI, HPr-binding domain superfamily YPN_2990 IPR040442 Pyruvate kinase-like domain superfamily YPN_2990 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPN_2991 IPR022927 RNA pyrophosphohydrolase RppH YPN_2991 IPR000086 NUDIX hydrolase domain YPN_2991 IPR020084 NUDIX hydrolase, conserved site YPN_2991 IPR015797 NUDIX hydrolase-like domain superfamily YPN_2991 IPR020476 NUDIX hydrolase YPN_2992 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II YPN_2992 IPR037057 DNA mismatch repair MutH/Restriction endonuclease, type II superfamily YPN_2992 IPR011335 Restriction endonuclease type II-like YPN_2992 IPR004230 DNA mismatch repair protein MutH YPN_2993 IPR020471 Aldo/keto reductase YPN_2993 IPR023210 NADP-dependent oxidoreductase domain YPN_2993 IPR036812 NADP-dependent oxidoreductase domain superfamily YPN_2995 IPR036259 MFS transporter superfamily YPN_2995 IPR011701 Major facilitator superfamily YPN_2995 IPR023727 Lysophospholipid transporter LplT YPN_2996 IPR042099 AMP-dependent synthetase-like superfamily YPN_2996 IPR000873 AMP-dependent synthetase/ligase YPN_2996 IPR020845 AMP-binding, conserved site YPN_2996 IPR025110 AMP-binding enzyme, C-terminal domain YPN_2996 IPR023775 Bifunctional protein Aas YPN_2996 IPR002123 Phospholipid/glycerol acyltransferase YPN_2997 IPR020845 AMP-binding, conserved site YPN_2997 IPR023775 Bifunctional protein Aas YPN_2997 IPR042099 AMP-dependent synthetase-like superfamily YPN_2997 IPR025110 AMP-binding enzyme, C-terminal domain YPN_2997 IPR002123 Phospholipid/glycerol acyltransferase YPN_2997 IPR000873 AMP-dependent synthetase/ligase YPN_2998 IPR009010 Aspartate decarboxylase-like domain superfamily YPN_2998 IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase YPN_2998 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPN_2998 IPR006657 Molybdopterin dinucleotide-binding domain YPN_2998 IPR006656 Molybdopterin oxidoreductase YPN_2999 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPN_2999 IPR028082 Periplasmic binding protein-like I YPN_2999 IPR000843 LacI-type HTH domain YPN_3000 IPR000183 Ornithine/DAP/Arg decarboxylase YPN_3000 IPR002986 Diaminopimelate decarboxylase, LysA YPN_3000 IPR029066 PLP-binding barrel YPN_3000 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal YPN_3000 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site YPN_3000 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal YPN_3000 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal YPN_3000 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site YPN_3001 IPR037414 Transcriptional activator protein LysR, PBP2 domain YPN_3001 IPR036390 Winged helix DNA-binding domain superfamily YPN_3001 IPR005119 LysR, substrate-binding YPN_3001 IPR000847 Transcription regulator HTH, LysR YPN_3001 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3002 IPR020846 Major facilitator superfamily domain YPN_3002 IPR011701 Major facilitator superfamily YPN_3002 IPR036259 MFS transporter superfamily YPN_3003 IPR036390 Winged helix DNA-binding domain superfamily YPN_3003 IPR005119 LysR, substrate-binding YPN_3003 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3003 IPR000847 Transcription regulator HTH, LysR YPN_3006 IPR003660 HAMP domain YPN_3006 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YPN_3006 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPN_3006 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding YPN_3006 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPN_3006 IPR004090 Chemotaxis methyl-accepting receptor YPN_3010 IPR000045 Prepilin type IV endopeptidase, peptidase domain YPN_3010 IPR010627 Peptidase A24A, N-terminal YPN_3010 IPR014032 Peptidase A24A, prepilin type IV, bacterial YPN_3015 IPR012902 Prokaryotic N-terminal methylation site YPN_3015 IPR003413 Type II secretion system protein I domain YPN_3015 IPR010052 Type II secretion system protein I YPN_3017 IPR012902 Prokaryotic N-terminal methylation site YPN_3017 IPR013545 Type II secretion system protein G YPN_3017 IPR010054 General secretion pathway protein G YPN_3017 IPR000983 Bacterial general secretion pathway protein G-type pilin YPN_3018 IPR003004 GspF/PilC family YPN_3018 IPR011850 General secretion pathway protein F YPN_3018 IPR018076 Type II secretion system F domain YPN_3018 IPR001992 Type II secretion system conserved site YPN_3018 IPR042094 Type II secretion system F domain superfamily YPN_3020 IPR004845 Type II secretion system GspD, conserved site YPN_3020 IPR005644 NolW-like YPN_3020 IPR001775 GspD/PilQ family YPN_3020 IPR038591 NolW-like superfamily YPN_3020 IPR004846 Type II/III secretion system YPN_3020 IPR013356 Type II secretion system GspD YPN_3023 IPR036874 Carbonic anhydrase superfamily YPN_3023 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site YPN_3023 IPR001765 Carbonic anhydrase YPN_3027 IPR014718 Glycoside hydrolase-type carbohydrate-binding YPN_3027 IPR015176 Lyase, N-terminal YPN_3027 IPR011013 Galactose mutarotase-like domain superfamily YPN_3027 IPR003159 Polysaccharide lyase family 8, central domain YPN_3027 IPR008979 Galactose-binding-like domain superfamily YPN_3027 IPR024200 Chondroitin sulfate ABC endolyase YPN_3027 IPR008929 Chondroitin AC/alginate lyase YPN_3027 IPR011071 Polysaccharide lyase family 8-like, C-terminal YPN_3027 IPR039174 Chondroitin sulfate ABC lyase YPN_3027 IPR015177 Lyase, catalytic YPN_3027 IPR004103 Polysaccharide lyase family 8, C-terminal YPN_3029 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3029 IPR003593 AAA+ ATPase domain YPN_3029 IPR001270 ClpA/B family YPN_3029 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_3029 IPR002611 IstB-like ATP-binding protein YPN_3030 IPR001584 Integrase, catalytic core YPN_3030 IPR006120 Resolvase, HTH domain YPN_3030 IPR012337 Ribonuclease H-like superfamily YPN_3030 IPR017894 HTH domain, IS21 transposase-type YPN_3030 IPR036397 Ribonuclease H superfamily YPN_3031 IPR002686 Transposase IS200-like YPN_3031 IPR036515 Transposase IS200-like superfamily YPN_3032 IPR000917 Sulfatase, N-terminal YPN_3032 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPN_3033 IPR001034 DeoR-type HTH domain YPN_3033 IPR014036 DeoR C-terminal sensor domain YPN_3033 IPR037171 NagB/RpiA transferase-like YPN_3033 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3033 IPR036390 Winged helix DNA-binding domain superfamily YPN_3033 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPN_3034 IPR023435 D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit KbaZ YPN_3034 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ-like YPN_3034 IPR013785 Aldolase-type TIM barrel YPN_3035 IPR035466 GlmS/AgaS, SIS domain 1 YPN_3035 IPR014180 Sugar isomerase, AgaS YPN_3035 IPR035464 AgaS, SIS domain YPN_3035 IPR001347 Sugar isomerase (SIS) YPN_3036 IPR004720 Phosphotransferase system, sorbose subfamily IIB component YPN_3036 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup YPN_3036 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily YPN_3037 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit YPN_3038 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component YPN_3039 IPR004701 Phosphotransferase system, mannose-type IIA component YPN_3039 IPR033887 PTS system mannose/sorbose specific IIA subunit YPN_3039 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily YPN_3040 IPR032466 Metal-dependent hydrolase YPN_3040 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPN_3040 IPR003764 N-acetylglucosamine-6-phosphate deacetylase YPN_3040 IPR006680 Amidohydrolase-related YPN_3041 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPN_3041 IPR036291 NAD(P)-binding domain superfamily YPN_3041 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase YPN_3041 IPR002347 Short-chain dehydrogenase/reductase SDR YPN_3043 IPR023885 4Fe4S-binding SPASM domain YPN_3043 IPR013785 Aldolase-type TIM barrel YPN_3043 IPR007197 Radical SAM YPN_3043 IPR034491 Anaerobic Ser-type sulfatase-maturating enzyme YPN_3044 IPR024607 Sulfatase, conserved site YPN_3044 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPN_3044 IPR000917 Sulfatase, N-terminal YPN_3046 IPR000771 Fructose-bisphosphate aldolase, class-II YPN_3046 IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY YPN_3046 IPR023955 D-tagatose-bisphosphate aldolase, class II, subunit GatY YPN_3046 IPR013785 Aldolase-type TIM barrel YPN_3048 IPR023588 Transcription regulator HTH, PurR YPN_3048 IPR000843 LacI-type HTH domain YPN_3048 IPR028082 Periplasmic binding protein-like I YPN_3048 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPN_3049 IPR011701 Major facilitator superfamily YPN_3049 IPR036259 MFS transporter superfamily YPN_3049 IPR020846 Major facilitator superfamily domain YPN_3050 IPR013780 Glycosyl hydrolase, all-beta YPN_3050 IPR000322 Glycoside hydrolase family 31 YPN_3050 IPR030458 Glycosyl hydrolases family 31, active site YPN_3050 IPR017853 Glycoside hydrolase superfamily YPN_3050 IPR030459 Glycosyl hydrolases family 31, conserved site YPN_3050 IPR011013 Galactose mutarotase-like domain superfamily YPN_3050 IPR033403 Domain of unknown function DUF5110 YPN_3050 IPR025887 Glycoside hydrolase family 31, N-terminal domain YPN_3050 IPR032513 Alpha-glucosidase, domain of unknown function DUF4968 YPN_3051 IPR000843 LacI-type HTH domain YPN_3051 IPR028082 Periplasmic binding protein-like I YPN_3051 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPN_3052 IPR023738 Maltoporin YPN_3052 IPR003192 Porin, LamB-type YPN_3052 IPR036998 Porin, LamB-type superfamily YPN_3053 IPR013013 Phosphotransferase system, EIIC component, type 1 YPN_3053 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site YPN_3053 IPR011299 PTS system glucose-specific IIBC component YPN_3053 IPR036878 Glucose permease domain IIB YPN_3053 IPR003352 Phosphotransferase system, EIIC YPN_3053 IPR001996 Phosphotransferase system, IIB component, type 1 YPN_3054 IPR013529 Glycoside hydrolase, family 42, N-terminal YPN_3054 IPR003476 Glycoside hydrolase, family 42 YPN_3054 IPR017853 Glycoside hydrolase superfamily YPN_3054 IPR013738 Beta-galactosidase trimerisation YPN_3054 IPR013780 Glycosyl hydrolase, all-beta YPN_3054 IPR029062 Class I glutamine amidotransferase-like YPN_3054 IPR013739 Beta-galactosidase C-terminal YPN_3055 IPR017853 Glycoside hydrolase superfamily YPN_3055 IPR011683 Glycosyl hydrolase family 53 YPN_3056 IPR035906 MetI-like superfamily YPN_3056 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_3057 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_3057 IPR035906 MetI-like superfamily YPN_3058 IPR006059 Bacterial extracellular solute-binding protein YPN_3058 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein YPN_3059 IPR003593 AAA+ ATPase domain YPN_3059 IPR008995 Molybdate/tungstate binding, C-terminal YPN_3059 IPR003439 ABC transporter-like YPN_3059 IPR017871 ABC transporter, conserved site YPN_3059 IPR040582 MalK, OB fold domain YPN_3059 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3060 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3060 IPR015861 ABC transporter, ribose import, RbsA YPN_3060 IPR017871 ABC transporter, conserved site YPN_3060 IPR003439 ABC transporter-like YPN_3060 IPR003593 AAA+ ATPase domain YPN_3061 IPR001851 ABC transporter, permease YPN_3062 IPR028082 Periplasmic binding protein-like I YPN_3062 IPR025997 Periplasmic binding protein YPN_3064 IPR024453 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family YPN_3064 IPR038765 Papain-like cysteine peptidase superfamily YPN_3065 IPR005149 Transcription regulator PadR, N-terminal YPN_3065 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3065 IPR036390 Winged helix DNA-binding domain superfamily YPN_3080 IPR001387 Cro/C1-type helix-turn-helix domain YPN_3080 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPN_3080 IPR022452 Antitoxin MqsA YPN_3080 IPR032758 Antitoxin MqsA/HigA-2 YPN_3080 IPR022453 Zinc finger, MqsA-type YPN_3081 IPR031451 mRNA interferase toxin MqsR YPN_3081 IPR038493 Toxin MqsR superfamily YPN_3086 IPR010998 Integrase/recombinase, N-terminal YPN_3086 IPR013762 Integrase-like, catalytic domain superfamily YPN_3086 IPR025166 Integrase, DNA-binding domain YPN_3086 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPN_3086 IPR002104 Integrase, catalytic domain YPN_3086 IPR038488 Integrase, DNA-binding domain superfamily YPN_3086 IPR004107 Integrase, SAM-like, N-terminal YPN_3087 IPR034762 Bacterial/eukaryotic lysine-tRNA ligase, class II YPN_3087 IPR002313 Lysine-tRNA ligase, class II YPN_3087 IPR006195 Aminoacyl-tRNA synthetase, class II YPN_3087 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YPN_3087 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal YPN_3087 IPR012340 Nucleic acid-binding, OB-fold YPN_3087 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YPN_3088 IPR004374 Peptide chain release factor 2 YPN_3088 IPR000352 Peptide chain release factor class I YPN_3088 IPR005139 Peptide chain release factor YPN_3089 IPR038763 DHH phosphoesterase superfamily YPN_3089 IPR003156 DHHA1 domain YPN_3089 IPR041122 RecJ, OB domain YPN_3089 IPR004610 Bacterial RecJ exonuclease YPN_3089 IPR001667 DDH domain YPN_3090 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily YPN_3090 IPR012336 Thioredoxin-like fold YPN_3090 IPR017937 Thioredoxin, conserved site YPN_3090 IPR036249 Thioredoxin-like superfamily YPN_3090 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal YPN_3090 IPR013766 Thioredoxin domain YPN_3090 IPR033954 Disulphide bond isomerase, DsbC/G YPN_3091 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPN_3091 IPR013762 Integrase-like, catalytic domain superfamily YPN_3091 IPR002104 Integrase, catalytic domain YPN_3091 IPR010998 Integrase/recombinase, N-terminal YPN_3091 IPR004107 Integrase, SAM-like, N-terminal YPN_3091 IPR023009 Tyrosine recombinase XerC/XerD YPN_3091 IPR011932 Tyrosine recombinase XerD YPN_3092 IPR008254 Flavodoxin/nitric oxide synthase YPN_3092 IPR029039 Flavoprotein-like superfamily YPN_3092 IPR001226 Flavodoxin, conserved site YPN_3092 IPR010086 Flavodoxin, long chain YPN_3093 IPR010364 Uncharacterised protein family, inner membrane CreD YPN_3094 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPN_3094 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPN_3094 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPN_3094 IPR029151 Periplasmic sensor-like domain superfamily YPN_3094 IPR005467 Histidine kinase domain YPN_3094 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_3094 IPR003660 HAMP domain YPN_3094 IPR003594 Histidine kinase/HSP90-like ATPase YPN_3095 IPR011006 CheY-like superfamily YPN_3095 IPR001867 OmpR/PhoB-type DNA-binding domain YPN_3095 IPR016032 Signal transduction response regulator, C-terminal effector YPN_3095 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3095 IPR039420 Transcriptional regulatory protein WalR-like YPN_3095 IPR001789 Signal transduction response regulator, receiver domain YPN_3096 IPR009883 Inner membrane protein YgfX YPN_3097 IPR005631 Flavinator of succinate dehydrogenase YPN_3097 IPR036714 Flavinator of succinate dehydrogenase superfamily YPN_3098 IPR006222 Aminomethyltransferase, folate-binding domain YPN_3098 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal YPN_3098 IPR023758 tRNA-modifying protein YgfZ YPN_3098 IPR017703 YgfZ/GcvT conserved site YPN_3100 IPR004254 AdipoR/Haemolysin-III-related YPN_3100 IPR005744 Hly-III YPN_3102 IPR008640 Head domain of trimeric autotransporter adhesin YPN_3102 IPR008635 Coiled stalk of trimeric autotransporter adhesin YPN_3102 IPR024973 ESPR domain YPN_3102 IPR011049 Serralysin-like metalloprotease, C-terminal YPN_3102 IPR005594 YadA-like, C-terminal YPN_3104 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_3104 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_3104 IPR003437 Glycine dehydrogenase (decarboxylating) YPN_3104 IPR015424 Pyridoxal phosphate-dependent transferase YPN_3104 IPR020581 Glycine cleavage system P protein YPN_3105 IPR000089 Biotin/lipoyl attachment YPN_3105 IPR011053 Single hybrid motif YPN_3105 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site YPN_3105 IPR017453 Glycine cleavage system H-protein, subgroup YPN_3105 IPR033753 Glycine cleavage system H-protein/Simiate YPN_3105 IPR002930 Glycine cleavage system H-protein YPN_3106 IPR006223 Glycine cleavage system T protein YPN_3106 IPR022903 Glycine cleavage system T protein, bacteria YPN_3106 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain YPN_3106 IPR006222 Aminomethyltransferase, folate-binding domain YPN_3106 IPR028896 Aminomethyltransferase-like YPN_3106 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 YPN_3106 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal YPN_3107 IPR002938 FAD-binding domain YPN_3107 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_3107 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 YPN_3107 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site YPN_3108 IPR002938 FAD-binding domain YPN_3108 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_3108 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site YPN_3108 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase YPN_3108 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 YPN_3109 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site YPN_3109 IPR001714 Peptidase M24, methionine aminopeptidase YPN_3109 IPR000994 Peptidase M24 YPN_3109 IPR036005 Creatinase/aminopeptidase-like YPN_3109 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPN_3109 IPR007865 Aminopeptidase P, N-terminal YPN_3110 IPR036255 YgfB-like superfamily YPN_3110 IPR011978 Uncharacterised protein family UPF0149 YPN_3111 IPR007838 Cell division protein ZapA-like YPN_3111 IPR036192 Cell division protein ZapA-like superfamily YPN_3111 IPR023771 Cell division protein ZapA, eubacteria YPN_3112 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily YPN_3112 IPR037171 NagB/RpiA transferase-like YPN_3112 IPR002698 5-formyltetrahydrofolate cyclo-ligase YPN_3113 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPN_3113 IPR036291 NAD(P)-binding domain superfamily YPN_3113 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPN_3113 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPN_3113 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPN_3113 IPR002912 ACT domain YPN_3114 IPR037171 NagB/RpiA transferase-like YPN_3114 IPR004788 Ribose 5-phosphate isomerase, type A YPN_3114 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup YPN_3115 IPR023490 HTH-type transcriptional regulator ArgP, Gammaproteobacteria YPN_3115 IPR017685 HTH-type transcriptional regulator ArgP YPN_3115 IPR005119 LysR, substrate-binding YPN_3115 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3115 IPR000847 Transcription regulator HTH, LysR YPN_3115 IPR036390 Winged helix DNA-binding domain superfamily YPN_3116 IPR007497 Protein of unknown function DUF541 YPN_3117 IPR004777 L-lysine exporter/arginine exporter YPN_3117 IPR001123 Amino acid exporter protein, LeuE-type YPN_3117 IPR023445 Arginine exporter protein ArgO, enterobacteria YPN_3118 IPR010920 LSM domain superfamily YPN_3118 IPR006685 Mechanosensitive ion channel MscS YPN_3118 IPR008910 Conserved TM helix YPN_3118 IPR023408 Mechanosensitive ion channel MscS domain superfamily YPN_3118 IPR011066 Mechanosensitive ion channel MscS, C-terminal YPN_3118 IPR006686 Mechanosensitive ion channel MscS, conserved site YPN_3118 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 YPN_3119 IPR013785 Aldolase-type TIM barrel YPN_3119 IPR000771 Fructose-bisphosphate aldolase, class-II YPN_3119 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype YPN_3120 IPR015911 Phosphoglycerate kinase, conserved site YPN_3120 IPR001576 Phosphoglycerate kinase YPN_3120 IPR036043 Phosphoglycerate kinase superfamily YPN_3120 IPR015824 Phosphoglycerate kinase, N-terminal YPN_3121 IPR036291 NAD(P)-binding domain superfamily YPN_3121 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain YPN_3121 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YPN_3121 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site YPN_3121 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family YPN_3121 IPR006422 D-erythrose-4-phosphate dehydrogenase YPN_3123 IPR033247 Transketolase family YPN_3123 IPR033248 Transketolase, C-terminal domain YPN_3123 IPR020826 Transketolase binding site YPN_3123 IPR005478 Transketolase, bacterial-like YPN_3123 IPR005475 Transketolase-like, pyrimidine-binding domain YPN_3123 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II YPN_3123 IPR029061 Thiamin diphosphate-binding fold YPN_3123 IPR005474 Transketolase, N-terminal YPN_3124 IPR001915 Peptidase M48 YPN_3126 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site YPN_3126 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site YPN_3126 IPR029066 PLP-binding barrel YPN_3126 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal YPN_3126 IPR002985 Arginine decarboxylase YPN_3126 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal YPN_3126 IPR040634 Arginine decarboxylase, helical bundle domain YPN_3126 IPR041128 Arginine decarboxylase, C-terminal helical YPN_3126 IPR000183 Ornithine/DAP/Arg decarboxylase YPN_3127 IPR022630 S-adenosylmethionine synthetase, C-terminal YPN_3127 IPR022629 S-adenosylmethionine synthetase, central domain YPN_3127 IPR022628 S-adenosylmethionine synthetase, N-terminal YPN_3127 IPR002133 S-adenosylmethionine synthetase YPN_3127 IPR022636 S-adenosylmethionine synthetase superfamily YPN_3127 IPR022631 S-adenosylmethionine synthetase, conserved site YPN_3128 IPR023483 Uncharacterised protein family SprT YPN_3128 IPR035240 SprT-like, zinc ribbon domain YPN_3128 IPR006640 SprT-like YPN_3129 IPR007346 Endonuclease I YPN_3131 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPN_3131 IPR006700 Ribosomal RNA small subunit methyltransferase E YPN_3131 IPR015947 PUA-like superfamily YPN_3131 IPR029028 Alpha/beta knot methyltransferases YPN_3132 IPR011761 ATP-grasp fold YPN_3132 IPR006284 Glutathione synthetase, prokaryotic YPN_3132 IPR004218 Prokaryotic glutathione synthetase, ATP-binding YPN_3132 IPR004215 Prokaryotic glutathione synthetase, N-terminal YPN_3132 IPR016185 Pre-ATP-grasp domain superfamily YPN_3132 IPR013815 ATP-grasp fold, subdomain 1 YPN_3133 IPR003774 Protein of unknown function UPF0301 YPN_3134 IPR012337 Ribonuclease H-like superfamily YPN_3134 IPR037027 YqgF/RNase H-like domain superfamily YPN_3134 IPR006641 YqgF/RNase H-like domain YPN_3134 IPR005227 Putative pre-16S rRNA nuclease YPN_3135 IPR023719 Aliphatic amidase YPN_3135 IPR036526 Carbon-nitrogen hydrolase superfamily YPN_3135 IPR003010 Carbon-nitrogen hydrolase YPN_3136 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type YPN_3136 IPR017754 Agmatine deiminase YPN_3137 IPR003593 AAA+ ATPase domain YPN_3137 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3137 IPR001482 Type II/IV secretion system protein YPN_3137 IPR006321 Pilus retraction protein PilT YPN_3138 IPR001608 Alanine racemase, N-terminal YPN_3138 IPR011078 Pyridoxal phosphate homeostasis protein YPN_3138 IPR029066 PLP-binding barrel YPN_3139 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPN_3139 IPR000304 Pyrroline-5-carboxylate reductase YPN_3139 IPR036291 NAD(P)-binding domain superfamily YPN_3139 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal YPN_3139 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain YPN_3140 IPR003425 CCB3/YggT YPN_3141 IPR005228 Conserved hypothetical protein CHP00251 YPN_3141 IPR036591 YggU-like superfamily YPN_3141 IPR003746 Protein of unknown function DUF167 YPN_3142 IPR020922 dITP/XTP pyrophosphatase YPN_3142 IPR029001 Inosine triphosphate pyrophosphatase-like YPN_3142 IPR002637 Ham1-like protein YPN_3143 IPR006638 Elp3/MiaB/NifB YPN_3143 IPR010723 HemN, C-terminal YPN_3143 IPR004559 Heme chaperone HemW-like YPN_3143 IPR007197 Radical SAM YPN_3143 IPR034505 Anaerobic coproporphyrinogen-III oxidase YPN_3143 IPR023404 Radical SAM, alpha/beta horseshoe YPN_3144 IPR020972 Dermonecrotic/RTX toxin, membrane localization domain YPN_3144 IPR020974 CGT/MARTX, cysteine protease (CPD) domain YPN_3144 IPR038383 CGT/MARTX, cysteine protease (CPD) domain superfamily YPN_3144 IPR032074 Actin cross-linking domain YPN_3144 IPR022742 Serine aminopeptidase, S33 YPN_3144 IPR011509 RtxA toxin YPN_3144 IPR011049 Serralysin-like metalloprotease, C-terminal YPN_3144 IPR029058 Alpha/Beta hydrolase fold YPN_3145 IPR021307 Protein of unknown function DUF2884 YPN_3146 IPR021307 Protein of unknown function DUF2884 YPN_3147 IPR015868 Glutaminase YPN_3147 IPR012338 Beta-lactamase/transpeptidase-like YPN_3148 IPR007416 Protein of unknown function DUF469 YPN_3149 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type YPN_3149 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_3150 IPR005760 A/G-specific adenine glycosylase MutY YPN_3150 IPR004035 Endonuclease III, iron-sulphur binding site YPN_3150 IPR004036 Endonuclease III-like, conserved site-2 YPN_3150 IPR029119 MutY, C-terminal YPN_3150 IPR015797 NUDIX hydrolase-like domain superfamily YPN_3150 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal YPN_3150 IPR000445 Helix-hairpin-helix motif YPN_3150 IPR003265 HhH-GPD domain YPN_3150 IPR011257 DNA glycosylase YPN_3150 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif YPN_3151 IPR007457 Fe(II) trafficking protein YggX YPN_3151 IPR036766 Fe(II) trafficking protein YggX superfamily YPN_3152 IPR008258 Transglycosylase SLT domain 1 YPN_3152 IPR024570 Murein transglycosylase-C, N-terminal YPN_3152 IPR000189 Prokaryotic transglycosylase, active site YPN_3152 IPR023664 Murein transglycosylase-C YPN_3152 IPR023346 Lysozyme-like domain superfamily YPN_3154 IPR012910 TonB-dependent receptor, plug domain YPN_3154 IPR037066 TonB-dependent receptor, plug domain superfamily YPN_3154 IPR039423 TonB-dependent receptor-like YPN_3155 IPR001851 ABC transporter, permease YPN_3156 IPR017871 ABC transporter, conserved site YPN_3156 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3156 IPR015861 ABC transporter, ribose import, RbsA YPN_3156 IPR003439 ABC transporter-like YPN_3156 IPR003593 AAA+ ATPase domain YPN_3157 IPR025997 Periplasmic binding protein YPN_3157 IPR028082 Periplasmic binding protein-like I YPN_3158 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_3158 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_3158 IPR015424 Pyridoxal phosphate-dependent transferase YPN_3158 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily YPN_3158 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal YPN_3158 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal YPN_3158 IPR027464 Ornithine decarboxylase, N-terminal YPN_3158 IPR000310 Orn/Lys/Arg decarboxylase, major domain YPN_3158 IPR011193 Ornithine/lysine/arginine decarboxylase YPN_3158 IPR011006 CheY-like superfamily YPN_3160 IPR002104 Integrase, catalytic domain YPN_3160 IPR004107 Integrase, SAM-like, N-terminal YPN_3160 IPR013762 Integrase-like, catalytic domain superfamily YPN_3160 IPR010998 Integrase/recombinase, N-terminal YPN_3160 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPN_3162 IPR005063 Transposase, IS1 YPN_3163 IPR024431 Insertion element IS1 protein InsA, helix-turn-helix domain YPN_3163 IPR003220 InsA N-terminal domain YPN_3163 IPR009057 Homeobox-like domain superfamily YPN_3167 IPR003220 InsA N-terminal domain YPN_3167 IPR009057 Homeobox-like domain superfamily YPN_3167 IPR024431 Insertion element IS1 protein InsA, helix-turn-helix domain YPN_3170 IPR003959 ATPase, AAA-type, core YPN_3170 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3170 IPR041546 ClpA/ClpB, AAA lid domain YPN_3170 IPR018368 ClpA/B, conserved site 1 YPN_3170 IPR001270 ClpA/B family YPN_3170 IPR004176 Clp, N-terminal YPN_3170 IPR036628 Clp, N-terminal domain superfamily YPN_3170 IPR019489 Clp ATPase, C-terminal YPN_3170 IPR017729 Type VI secretion system, ATPase ClpV1 YPN_3170 IPR003593 AAA+ ATPase domain YPN_3178 IPR003220 InsA N-terminal domain YPN_3178 IPR024431 Insertion element IS1 protein InsA, helix-turn-helix domain YPN_3181 IPR003675 CAAX prenyl protease 2 YPN_3182 IPR018311 Autoinducer synthesis, conserved site YPN_3182 IPR016181 Acyl-CoA N-acyltransferase YPN_3182 IPR001690 Autoinducer synthase YPN_3183 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily YPN_3183 IPR000792 Transcription regulator LuxR, C-terminal YPN_3183 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3183 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain YPN_3183 IPR016032 Signal transduction response regulator, C-terminal effector YPN_3187 IPR022770 Ferric iron reductase FhuF domain YPN_3187 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPN_3187 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like YPN_3188 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like YPN_3188 IPR022770 Ferric iron reductase FhuF domain YPN_3188 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPN_3189 IPR019432 Siderophore biosynthesis protein, conserved domain YPN_3189 IPR016181 Acyl-CoA N-acyltransferase YPN_3190 IPR022770 Ferric iron reductase FhuF domain YPN_3190 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPN_3190 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like YPN_3191 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_3191 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase YPN_3192 IPR039426 Vitamin B12 transporter BtuB-like YPN_3192 IPR037066 TonB-dependent receptor, plug domain superfamily YPN_3192 IPR000531 TonB-dependent receptor-like, beta-barrel YPN_3192 IPR010916 TonB box, conserved site YPN_3192 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPN_3192 IPR010917 TonB-dependent receptor, conserved site YPN_3192 IPR010105 TonB-dependent siderophore receptor YPN_3192 IPR012910 TonB-dependent receptor, plug domain YPN_3193 IPR036259 MFS transporter superfamily YPN_3193 IPR020846 Major facilitator superfamily domain YPN_3193 IPR039672 Lactose permease-like YPN_3193 IPR018043 Sodium:galactoside symporter, conserved site YPN_3193 IPR001927 Sodium:galactoside symporter YPN_3195 IPR001584 Integrase, catalytic core YPN_3195 IPR025948 HTH-like domain YPN_3195 IPR038965 Transposase InsF-like YPN_3195 IPR036397 Ribonuclease H superfamily YPN_3195 IPR012337 Ribonuclease H-like superfamily YPN_3197 IPR000843 LacI-type HTH domain YPN_3197 IPR028082 Periplasmic binding protein-like I YPN_3197 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPN_3198 IPR031312 Sodium/sulphate symporter, conserved site YPN_3198 IPR001898 Solute carrier family 13 YPN_3201 IPR022385 Rhs repeat-associated core YPN_3201 IPR031325 RHS repeat YPN_3201 IPR006530 YD repeat YPN_3201 IPR001826 RHS protein YPN_3203 IPR037026 Vgr protein, OB-fold domain superfamily YPN_3203 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPN_3203 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPN_3203 IPR006531 Gp5 N-terminal YPN_3204 IPR013425 Autotransporter-associated beta strand repeat YPN_3204 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPN_3204 IPR005546 Autotransporter beta-domain YPN_3204 IPR036709 Autotransporter beta-domain superfamily YPN_3204 IPR006315 Outer membrane autotransporter barrel YPN_3204 IPR011050 Pectin lyase fold/virulence factor YPN_3205 IPR011050 Pectin lyase fold/virulence factor YPN_3205 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPN_3205 IPR006315 Outer membrane autotransporter barrel YPN_3205 IPR013425 Autotransporter-associated beta strand repeat YPN_3205 IPR036709 Autotransporter beta-domain superfamily YPN_3205 IPR005546 Autotransporter beta-domain YPN_3207 IPR003474 Gluconate transporter YPN_3210 IPR017871 ABC transporter, conserved site YPN_3210 IPR011917 ABC transporter, lipid A export, MsbA YPN_3210 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3210 IPR039421 Type I protein exporter YPN_3210 IPR003439 ABC transporter-like YPN_3210 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPN_3210 IPR011527 ABC transporter type 1, transmembrane domain YPN_3210 IPR003593 AAA+ ATPase domain YPN_3211 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPN_3211 IPR003439 ABC transporter-like YPN_3211 IPR007037 Siderophore-interacting protein, C-terminal domain YPN_3211 IPR017938 Riboflavin synthase-like beta-barrel YPN_3211 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3211 IPR017927 FAD-binding domain, ferredoxin reductase-type YPN_3211 IPR013113 FAD-binding 9, siderophore-interacting YPN_3211 IPR017871 ABC transporter, conserved site YPN_3211 IPR003593 AAA+ ATPase domain YPN_3211 IPR011527 ABC transporter type 1, transmembrane domain YPN_3211 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPN_3213 IPR020802 Polyketide synthase, thioesterase domain YPN_3213 IPR012223 Thioesterase type II, NRPS/PKS/S-FAS YPN_3213 IPR001031 Thioesterase YPN_3213 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPN_3213 IPR029058 Alpha/Beta hydrolase fold YPN_3216 IPR009081 Phosphopantetheine binding ACP domain YPN_3216 IPR020806 Polyketide synthase, phosphopantetheine-binding domain YPN_3216 IPR013217 Methyltransferase type 12 YPN_3216 IPR001242 Condensation domain YPN_3216 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_3216 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YPN_3216 IPR042099 AMP-dependent synthetase-like superfamily YPN_3216 IPR000873 AMP-dependent synthetase/ligase YPN_3216 IPR020845 AMP-binding, conserved site YPN_3216 IPR010071 Amino acid adenylation domain YPN_3216 IPR036736 ACP-like superfamily YPN_3216 IPR006162 Phosphopantetheine attachment site YPN_3217 IPR009081 Phosphopantetheine binding ACP domain YPN_3217 IPR001242 Condensation domain YPN_3217 IPR000873 AMP-dependent synthetase/ligase YPN_3217 IPR042099 AMP-dependent synthetase-like superfamily YPN_3217 IPR010071 Amino acid adenylation domain YPN_3217 IPR020845 AMP-binding, conserved site YPN_3217 IPR025110 AMP-binding enzyme, C-terminal domain YPN_3217 IPR036736 ACP-like superfamily YPN_3217 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YPN_3218 IPR006162 Phosphopantetheine attachment site YPN_3218 IPR009081 Phosphopantetheine binding ACP domain YPN_3218 IPR020806 Polyketide synthase, phosphopantetheine-binding domain YPN_3218 IPR013217 Methyltransferase type 12 YPN_3218 IPR001242 Condensation domain YPN_3218 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_3218 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YPN_3218 IPR010071 Amino acid adenylation domain YPN_3218 IPR036736 ACP-like superfamily YPN_3218 IPR020845 AMP-binding, conserved site YPN_3218 IPR000873 AMP-dependent synthetase/ligase YPN_3218 IPR042099 AMP-dependent synthetase-like superfamily YPN_3219 IPR003593 AAA+ ATPase domain YPN_3219 IPR001270 ClpA/B family YPN_3219 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_3219 IPR002611 IstB-like ATP-binding protein YPN_3219 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3220 IPR012337 Ribonuclease H-like superfamily YPN_3220 IPR036397 Ribonuclease H superfamily YPN_3220 IPR006120 Resolvase, HTH domain YPN_3220 IPR001584 Integrase, catalytic core YPN_3220 IPR017894 HTH domain, IS21 transposase-type YPN_3221 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_3221 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_3221 IPR015424 Pyridoxal phosphate-dependent transferase YPN_3221 IPR006162 Phosphopantetheine attachment site YPN_3221 IPR009081 Phosphopantetheine binding ACP domain YPN_3221 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPN_3221 IPR032821 Ketoacyl-synthetase, C-terminal extension YPN_3221 IPR014030 Beta-ketoacyl synthase, N-terminal YPN_3221 IPR014031 Beta-ketoacyl synthase, C-terminal YPN_3221 IPR018201 Beta-ketoacyl synthase, active site YPN_3221 IPR001242 Condensation domain YPN_3221 IPR020806 Polyketide synthase, phosphopantetheine-binding domain YPN_3221 IPR042099 AMP-dependent synthetase-like superfamily YPN_3221 IPR000873 AMP-dependent synthetase/ligase YPN_3221 IPR020845 AMP-binding, conserved site YPN_3221 IPR025110 AMP-binding enzyme, C-terminal domain YPN_3221 IPR016039 Thiolase-like YPN_3221 IPR036736 ACP-like superfamily YPN_3221 IPR010071 Amino acid adenylation domain YPN_3221 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YPN_3221 IPR005814 Aminotransferase class-III YPN_3222 IPR010105 TonB-dependent siderophore receptor YPN_3222 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPN_3222 IPR000531 TonB-dependent receptor-like, beta-barrel YPN_3222 IPR012910 TonB-dependent receptor, plug domain YPN_3222 IPR039426 Vitamin B12 transporter BtuB-like YPN_3223 IPR036264 Bacterial exopeptidase dimerisation domain YPN_3223 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YPN_3223 IPR002933 Peptidase M20 YPN_3223 IPR010161 Peptidase M20B, tripeptide aminopeptidase YPN_3223 IPR011650 Peptidase M20, dimerisation domain YPN_3224 IPR004697 p-Aminobenzoyl-glutamate transport protein AbgT YPN_3224 IPR011540 AbgT, Proteobacteria YPN_3225 IPR029487 Novel E3 ligase domain YPN_3225 IPR032674 LRR-containing bacterial E3 ligase, N-terminal YPN_3225 IPR032675 Leucine-rich repeat domain superfamily YPN_3226 IPR032675 Leucine-rich repeat domain superfamily YPN_3226 IPR029487 Novel E3 ligase domain YPN_3226 IPR032674 LRR-containing bacterial E3 ligase, N-terminal YPN_3226 IPR029487 Novel E3 ligase domain YPN_3226 IPR032675 Leucine-rich repeat domain superfamily YPN_3226 IPR032674 LRR-containing bacterial E3 ligase, N-terminal YPN_3227 IPR032675 Leucine-rich repeat domain superfamily YPN_3227 IPR029487 Novel E3 ligase domain YPN_3227 IPR032674 LRR-containing bacterial E3 ligase, N-terminal YPN_3228 IPR036709 Autotransporter beta-domain superfamily YPN_3228 IPR006315 Outer membrane autotransporter barrel YPN_3228 IPR011050 Pectin lyase fold/virulence factor YPN_3228 IPR005546 Autotransporter beta-domain YPN_3230 IPR002110 Ankyrin repeat YPN_3230 IPR036770 Ankyrin repeat-containing domain superfamily YPN_3230 IPR012927 ShET2 enterotoxin, N-terminal YPN_3231 IPR001036 Acriflavin resistance protein YPN_3231 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 YPN_3231 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPN_3232 IPR006143 RND efflux pump, membrane fusion protein YPN_3232 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPN_3234 IPR001633 EAL domain YPN_3234 IPR035919 EAL domain superfamily YPN_3234 IPR000160 GGDEF domain YPN_3234 IPR005330 MHYT domain YPN_3234 IPR029787 Nucleotide cyclase YPN_3234 IPR035965 PAS domain superfamily YPN_3234 IPR000014 PAS domain YPN_3235 IPR038965 Transposase InsF-like YPN_3235 IPR025948 HTH-like domain YPN_3235 IPR012337 Ribonuclease H-like superfamily YPN_3235 IPR001584 Integrase, catalytic core YPN_3235 IPR036397 Ribonuclease H superfamily YPN_3237 IPR000589 Ribosomal protein S15 YPN_3237 IPR005290 Ribosomal protein S15, bacterial-type YPN_3237 IPR009068 S15/NS1, RNA-binding YPN_3238 IPR015947 PUA-like superfamily YPN_3238 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal YPN_3238 IPR032819 tRNA pseudouridylate synthase B, C-terminal YPN_3238 IPR036974 PUA domain superfamily YPN_3238 IPR014780 tRNA pseudouridine synthase II, TruB YPN_3238 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPN_3238 IPR002501 Pseudouridine synthase II, N-terminal YPN_3239 IPR015946 K homology domain-like, alpha/beta YPN_3239 IPR000238 Ribosome-binding factor A YPN_3239 IPR023799 Ribosome-binding factor A domain superfamily YPN_3239 IPR020053 Ribosome-binding factor A, conserved site YPN_3240 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3240 IPR000795 Transcription factor, GTP-binding domain YPN_3240 IPR000178 Translation initiation factor aIF-2, bacterial-like YPN_3240 IPR009000 Translation protein, beta-barrel domain superfamily YPN_3240 IPR009061 Putative DNA-binding domain superfamily YPN_3240 IPR004161 Translation elongation factor EFTu-like, domain 2 YPN_3240 IPR036925 Translation initiation factor IF-2, domain 3 superfamily YPN_3240 IPR023115 Translation initiation factor IF- 2, domain 3 YPN_3240 IPR013575 Initiation factor 2 associated domain, bacterial YPN_3240 IPR015760 Translation initiation factor IF- 2 YPN_3240 IPR006847 Translation initiation factor IF-2, N-terminal YPN_3240 IPR005225 Small GTP-binding protein domain YPN_3241 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical YPN_3241 IPR015946 K homology domain-like, alpha/beta YPN_3241 IPR025249 KH domain, NusA-like YPN_3241 IPR012340 Nucleic acid-binding, OB-fold YPN_3241 IPR030842 Transcription termination/antitermination protein NusA, bacterial YPN_3241 IPR036555 NusA, N-terminal domain superfamily YPN_3241 IPR022967 RNA-binding domain, S1 YPN_3241 IPR003029 S1 domain YPN_3241 IPR013735 Transcription factor NusA, N-terminal YPN_3241 IPR010214 Transcription termination factor NusA, C-terminal duplication YPN_3241 IPR010213 Transcription termination factor NusA YPN_3241 IPR009019 K homology domain superfamily, prokaryotic type YPN_3242 IPR028989 Ribosome maturation factor RimP, N-terminal YPN_3242 IPR028998 Ribosome maturation factor RimP, C-terminal YPN_3242 IPR035956 RimP, N-terminal domain superfamily YPN_3242 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily YPN_3242 IPR003728 Ribosome maturation factor RimP YPN_3243 IPR004692 Preprotein translocase SecG subunit YPN_3244 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YPN_3244 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily YPN_3244 IPR016066 Alpha-D-phosphohexomutase, conserved site YPN_3244 IPR005841 Alpha-D-phosphohexomutase superfamily YPN_3244 IPR006352 Phosphoglucosamine mutase, bacterial type YPN_3244 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YPN_3244 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YPN_3244 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YPN_3244 IPR005843 Alpha-D-phosphohexomutase, C-terminal YPN_3245 IPR011005 Dihydropteroate synthase-like YPN_3245 IPR006390 Dihydropteroate synthase YPN_3245 IPR000489 Pterin-binding domain YPN_3246 IPR000642 Peptidase M41 YPN_3246 IPR041569 AAA ATPase, AAA+ lid domain YPN_3246 IPR003960 ATPase, AAA-type, conserved site YPN_3246 IPR005936 Peptidase, FtsH YPN_3246 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3246 IPR011546 Peptidase M41, FtsH extracellular YPN_3246 IPR037219 Peptidase M41-like YPN_3246 IPR003593 AAA+ ATPase domain YPN_3246 IPR003959 ATPase, AAA-type, core YPN_3247 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_3247 IPR002877 Ribosomal RNA methyltransferase FtsJ domain YPN_3247 IPR015507 Ribosomal RNA large subunit methyltransferase E YPN_3247 IPR004512 Ribosomal RNA methyltransferase E, gammaproteobacteria YPN_3248 IPR001890 RNA-binding, CRM domain YPN_3248 IPR035920 YhbY-like superfamily YPN_3248 IPR017924 RNA-binding protein YhbY YPN_3249 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal YPN_3249 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily YPN_3249 IPR018151 Transcription elongation factor, GreA/GreB, conserved site YPN_3249 IPR023459 Transcription elongation factor GreA/GreB family YPN_3249 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal YPN_3249 IPR028624 Transcription elongation factor GreA/GreB YPN_3249 IPR006359 Transcription elongation factor GreA YPN_3249 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily YPN_3250 IPR012338 Beta-lactamase/transpeptidase-like YPN_3250 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C YPN_3251 IPR039420 Transcriptional regulatory protein WalR-like YPN_3251 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3251 IPR001789 Signal transduction response regulator, receiver domain YPN_3251 IPR011006 CheY-like superfamily YPN_3251 IPR001867 OmpR/PhoB-type DNA-binding domain YPN_3252 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_3252 IPR003660 HAMP domain YPN_3252 IPR005467 Histidine kinase domain YPN_3252 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPN_3252 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPN_3252 IPR003594 Histidine kinase/HSP90-like ATPase YPN_3252 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPN_3253 IPR006073 GTP binding domain YPN_3253 IPR035101 GTP-binding protein, Obg-type YPN_3253 IPR006074 GTP1/OBG, conserved site YPN_3253 IPR014100 GTP-binding protein Obg/CgtA YPN_3253 IPR006169 GTP1/OBG domain YPN_3253 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3253 IPR036726 GTP1/OBG domain superfamily YPN_3253 IPR031167 OBG-type guanine nucleotide-binding (G) domain YPN_3254 IPR000620 EamA domain YPN_3255 IPR018261 Ribosomal protein L27, conserved site YPN_3255 IPR001684 Ribosomal protein L27 YPN_3256 IPR036164 L21-like superfamily YPN_3256 IPR028909 Ribosomal protein L21-like YPN_3256 IPR001787 Ribosomal protein L21 YPN_3256 IPR018258 Ribosomal protein L21, conserved site YPN_3257 IPR000092 Polyprenyl synthetase YPN_3257 IPR008949 Isoprenoid synthase domain superfamily YPN_3257 IPR033749 Polyprenyl synthetase, conserved site YPN_3259 IPR038722 Ner, winged helix-turn-helix DNA-binding domain YPN_3259 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPN_3260 IPR036291 NAD(P)-binding domain superfamily YPN_3260 IPR023958 Malate dehydrogenase, type 1, bacterial YPN_3260 IPR010097 Malate dehydrogenase, type 1 YPN_3260 IPR001252 Malate dehydrogenase, active site YPN_3260 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal YPN_3260 IPR001236 Lactate/malate dehydrogenase, N-terminal YPN_3260 IPR022383 Lactate/malate dehydrogenase, C-terminal YPN_3260 IPR001557 L-lactate/malate dehydrogenase YPN_3261 IPR036390 Winged helix DNA-binding domain superfamily YPN_3261 IPR001669 Arginine repressor YPN_3261 IPR020900 Arginine repressor, DNA-binding domain YPN_3261 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3261 IPR036251 Arginine repressor, C-terminal domain superfamily YPN_3261 IPR020899 Arginine repressor, C-terminal YPN_3263 IPR036615 Mur ligase, C-terminal domain superfamily YPN_3263 IPR005757 Murein peptide ligase YPN_3263 IPR036565 Mur-like, catalytic domain superfamily YPN_3263 IPR004101 Mur ligase, C-terminal YPN_3263 IPR000713 Mur ligase, N-terminal catalytic domain YPN_3263 IPR013221 Mur ligase, central YPN_3264 IPR000146 Fructose-1,6-bisphosphatase class 1 YPN_3264 IPR020548 Fructose-1,6-bisphosphatase, active site YPN_3264 IPR028343 Fructose-1,6-bisphosphatase YPN_3264 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal YPN_3265 IPR036649 Inorganic pyrophosphatase superfamily YPN_3265 IPR008162 Inorganic pyrophosphatase YPN_3266 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily YPN_3266 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like YPN_3266 IPR013024 Gamma-glutamyl cyclotransferase-like YPN_3266 IPR039126 Gamma-glutamylaminecyclotransferase YPN_3267 IPR007452 Translocation and assembly module TamB YPN_3268 IPR000184 Bacterial surface antigen (D15) YPN_3268 IPR035243 TamA, POTRA domain 1 YPN_3268 IPR034746 POTRA domain YPN_3268 IPR039910 Surface antigen D15-like YPN_3268 IPR010827 POTRA domain, BamA/TamA-like YPN_3269 IPR002569 Peptide methionine sulphoxide reductase MsrA YPN_3269 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily YPN_3270 IPR000644 CBS domain YPN_3270 IPR036318 FAD-binding, type PCMH-like superfamily YPN_3270 IPR016169 FAD-binding, type PCMH, subdomain 2 YPN_3270 IPR005170 Transporter-associated domain YPN_3270 IPR002550 CNNM, transmembrane domain YPN_3271 IPR009491 Protein of unknown function DUF1107 YPN_3272 IPR006513 Conserved hypothetical protein CHP01626, YtfJ YPN_3273 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ YPN_3273 IPR000760 Inositol monophosphatase-like YPN_3273 IPR020550 Inositol monophosphatase, conserved site YPN_3273 IPR020583 Inositol monophosphatase, metal-binding site YPN_3274 IPR008334 5'-Nucleotidase, C-terminal YPN_3274 IPR036907 5'-Nucleotidase, C-terminal domain superfamily YPN_3274 IPR029052 Metallo-dependent phosphatase-like YPN_3274 IPR006146 5'-Nucleotidase, conserved site YPN_3274 IPR006294 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase YPN_3274 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPN_3274 IPR041827 CpdB, N-terminal metallophosphatase domain YPN_3274 IPR006179 5'-Nucleotidase/apyrase YPN_3275 IPR023742 Iron-sulfur cluster repair protein YftE YPN_3275 IPR012312 Haemerythrin-like YPN_3275 IPR019903 Repair of iron centres family YPN_3276 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily YPN_3276 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YPN_3276 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal YPN_3277 IPR007340 Opacity-associated protein A YPN_3277 IPR013731 Opacity-associated protein A, N-terminal YPN_3279 IPR036515 Transposase IS200-like superfamily YPN_3279 IPR002686 Transposase IS200-like YPN_3280 IPR036935 Ribosomal protein L9, N-terminal domain superfamily YPN_3280 IPR000244 Ribosomal protein L9 YPN_3280 IPR009027 Ribosomal protein L9/RNase H1, N-terminal YPN_3280 IPR020594 Ribosomal protein L9, bacteria/chloroplast YPN_3280 IPR020069 Ribosomal protein L9, C-terminal YPN_3280 IPR036791 Ribosomal protein L9, C-terminal domain superfamily YPN_3280 IPR020070 Ribosomal protein L9, N-terminal YPN_3281 IPR036870 Ribosomal protein S18 superfamily YPN_3281 IPR018275 Ribosomal protein S18, conserved site YPN_3281 IPR001648 Ribosomal protein S18 YPN_3282 IPR000424 Primosome PriB/single-strand DNA-binding YPN_3282 IPR012340 Nucleic acid-binding, OB-fold YPN_3282 IPR023646 Primosomal replication protein PriB YPN_3283 IPR000529 Ribosomal protein S6 YPN_3283 IPR020815 Ribosomal protein S6, conserved site YPN_3283 IPR020814 Ribosomal protein S6, plastid/chloroplast YPN_3283 IPR035980 Ribosomal protein S6 superfamily YPN_3283 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 YPN_3284 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain YPN_3284 IPR029058 Alpha/Beta hydrolase fold YPN_3285 IPR012337 Ribonuclease H-like superfamily YPN_3285 IPR006120 Resolvase, HTH domain YPN_3285 IPR001584 Integrase, catalytic core YPN_3285 IPR017894 HTH domain, IS21 transposase-type YPN_3285 IPR036397 Ribonuclease H superfamily YPN_3286 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3286 IPR001270 ClpA/B family YPN_3286 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_3286 IPR002611 IstB-like ATP-binding protein YPN_3286 IPR003593 AAA+ ATPase domain YPN_3288 IPR036275 YdgH-like superfamily YPN_3288 IPR010854 Domain of unknown function DUF1471 YPN_3288 IPR025543 Dodecin-like YPN_3289 IPR034184 Putative acyl-CoA dehydrogenase AidB YPN_3289 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily YPN_3289 IPR041504 Adaptive response protein AidB, N-terminal YPN_3289 IPR006089 Acyl-CoA dehydrogenase, conserved site YPN_3289 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain YPN_3289 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal YPN_3289 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal YPN_3290 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPN_3290 IPR013123 RNA 2-O ribose methyltransferase, substrate binding YPN_3290 IPR029064 50S ribosomal protein L30e-like YPN_3290 IPR004441 RNA methyltransferase TrmH family YPN_3290 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB YPN_3290 IPR029028 Alpha/beta knot methyltransferases YPN_3290 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPN_3291 IPR001900 Ribonuclease II/R YPN_3291 IPR003029 S1 domain YPN_3291 IPR022967 RNA-binding domain, S1 YPN_3291 IPR013668 Ribonuclease R winged-helix domain YPN_3291 IPR011805 Ribonuclease R YPN_3291 IPR004476 Ribonuclease II/ribonuclease R YPN_3291 IPR013223 Ribonuclease B, N-terminal OB domain YPN_3291 IPR022966 Ribonuclease II/R, conserved site YPN_3291 IPR012340 Nucleic acid-binding, OB-fold YPN_3291 IPR040476 RNase II/RNase R, cold shock domain YPN_3291 IPR011129 Cold shock domain YPN_3292 IPR000944 Transcription regulator Rrf2-type YPN_3292 IPR023761 Transcriptional repressor HTH, NsrR YPN_3292 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3292 IPR036390 Winged helix DNA-binding domain superfamily YPN_3292 IPR030489 Transcription regulator Rrf2-type, conserved site YPN_3293 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3293 IPR001114 Adenylosuccinate synthetase YPN_3293 IPR042111 Adenylosuccinate synthetase, domain 3 YPN_3293 IPR042110 Adenylosuccinate synthetase, domain 2 YPN_3293 IPR042109 Adenylosuccinate synthetase, domain 1 YPN_3293 IPR033128 Adenylosuccinate synthase, active site YPN_3293 IPR018220 Adenylosuccinate synthase, GTP-binding site YPN_3294 IPR019201 Protein of unknown function DUF2065 YPN_3295 IPR010200 HflC YPN_3295 IPR036013 Band 7/SPFH domain superfamily YPN_3295 IPR001107 Band 7 domain YPN_3296 IPR020980 Menbrane protein HflK, N-terminal YPN_3296 IPR010201 HflK YPN_3296 IPR036013 Band 7/SPFH domain superfamily YPN_3296 IPR001107 Band 7 domain YPN_3296 IPR001972 Stomatin family YPN_3297 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3297 IPR042108 GTPase HflX, N-terminal domain superfamily YPN_3297 IPR025121 GTPase HflX, N-terminal YPN_3297 IPR016496 GTPase HflX YPN_3297 IPR006073 GTP binding domain YPN_3297 IPR032305 GTP-binding protein, middle domain YPN_3297 IPR030394 HflX-type guanine nucleotide-binding (G) domain YPN_3297 IPR035647 EF-G domain III/V-like YPN_3298 IPR005001 RNA-binding protein Hfq YPN_3298 IPR010920 LSM domain superfamily YPN_3299 IPR018022 IPP transferase YPN_3299 IPR039657 Dimethylallyltransferase YPN_3299 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3300 IPR020667 DNA mismatch repair protein, MutL YPN_3300 IPR002099 DNA mismatch repair protein family, N-terminal YPN_3300 IPR013507 DNA mismatch repair protein, S5 domain 2-like YPN_3300 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_3300 IPR042121 MutL, C-terminal domain, regulatory subdomain YPN_3300 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms YPN_3300 IPR014790 MutL, C-terminal, dimerisation YPN_3300 IPR042120 MutL, C-terminal domain, dimerisation subdomain YPN_3300 IPR037198 MutL, C-terminal domain superfamily YPN_3300 IPR014762 DNA mismatch repair, conserved site YPN_3300 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPN_3300 IPR020568 Ribosomal protein S5 domain 2-type fold YPN_3301 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain YPN_3302 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3302 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE YPN_3303 IPR017953 Carbohydrate kinase, predicted, conserved site YPN_3303 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase YPN_3303 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr YPN_3303 IPR029056 Ribokinase-like YPN_3303 IPR036652 YjeF N-terminal domain superfamily YPN_3303 IPR004443 YjeF N-terminal domain YPN_3304 IPR004453 Epoxyqueuosine reductase QueG YPN_3304 IPR009051 Alpha-helical ferredoxin YPN_3304 IPR013542 Domain of unknown function DUF1730 YPN_3304 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPN_3304 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPN_3305 IPR013520 Exonuclease, RNase T/DNA polymerase III YPN_3305 IPR022894 Oligoribonuclease YPN_3305 IPR012337 Ribonuclease H-like superfamily YPN_3305 IPR036397 Ribonuclease H superfamily YPN_3306 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3306 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain YPN_3306 IPR004881 Ribosome biogenesis GTPase RsgA YPN_3306 IPR010914 RsgA GTPase domain YPN_3307 IPR033177 Phosphatidylserine decarboxylase YPN_3307 IPR003817 Phosphatidylserine decarboxylase-related YPN_3307 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 YPN_3308 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 YPN_3308 IPR023408 Mechanosensitive ion channel MscS domain superfamily YPN_3308 IPR010920 LSM domain superfamily YPN_3308 IPR006685 Mechanosensitive ion channel MscS YPN_3308 IPR024393 Mechanosensitive ion channel MscS, porin domain YPN_3308 IPR011066 Mechanosensitive ion channel MscS, C-terminal YPN_3308 IPR025692 Mechanosensitive ion channel inner membrane domain 1 YPN_3308 IPR006686 Mechanosensitive ion channel MscS, conserved site YPN_3309 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal YPN_3309 IPR004525 Elongation factor P--(R)-beta-lysine ligase YPN_3309 IPR006195 Aminoacyl-tRNA synthetase, class II YPN_3309 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YPN_3311 IPR005884 Fumarate reductase, flavoprotein subunit YPN_3311 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_3311 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site YPN_3311 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily YPN_3311 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal YPN_3311 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit YPN_3311 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily YPN_3311 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain YPN_3312 IPR036010 2Fe-2S ferredoxin-like superfamily YPN_3312 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPN_3312 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPN_3312 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPN_3312 IPR012675 Beta-grasp domain superfamily YPN_3312 IPR009051 Alpha-helical ferredoxin YPN_3312 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPN_3312 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal YPN_3312 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein YPN_3313 IPR003510 Fumarate reductase, subunit C YPN_3313 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit YPN_3314 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit YPN_3314 IPR003418 Fumarate reductase, subunit D YPN_3315 IPR000390 Small multidrug resistance protein family YPN_3316 IPR014722 Ribosomal protein L2, domain 2 YPN_3316 IPR012340 Nucleic acid-binding, OB-fold YPN_3316 IPR013185 Translation elongation factor, KOW-like YPN_3316 IPR001059 Translation elongation factor P/YeiP, central YPN_3316 IPR020599 Translation elongation factor P/YeiP YPN_3316 IPR015365 Elongation factor P, C-terminal YPN_3316 IPR011768 Translation elongation factor P YPN_3316 IPR013852 Translation elongation factor P/YeiP, conserved site YPN_3316 IPR008991 Translation protein SH3-like domain superfamily YPN_3317 IPR022462 Lysine-2,3-aminomutase-like YPN_3317 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase YPN_3317 IPR007197 Radical SAM YPN_3317 IPR013785 Aldolase-type TIM barrel YPN_3318 IPR025294 Protein of unknown function DUF4156 YPN_3319 IPR018370 Chaperonin Cpn60, conserved site YPN_3319 IPR001844 Chaperonin Cpn60 YPN_3319 IPR002423 Chaperonin Cpn60/TCP-1 family YPN_3319 IPR027409 GroEL-like apical domain superfamily YPN_3319 IPR027413 GroEL-like equatorial domain superfamily YPN_3319 IPR027410 TCP-1-like chaperonin intermediate domain superfamily YPN_3320 IPR018369 Chaperonin GroES, conserved site YPN_3320 IPR037124 GroES chaperonin superfamily YPN_3320 IPR020818 GroES chaperonin family YPN_3320 IPR011032 GroES-like superfamily YPN_3321 IPR007313 FxsA cytoplasmic membrane protein YPN_3322 IPR004708 Aspartate ammonia-lyase YPN_3322 IPR020557 Fumarate lyase, conserved site YPN_3322 IPR008948 L-Aspartase-like YPN_3322 IPR018951 Fumarase C, C-terminal YPN_3322 IPR000362 Fumarate lyase family YPN_3322 IPR022761 Fumarate lyase, N-terminal YPN_3322 IPR024083 Fumarase/histidase, N-terminal YPN_3323 IPR004668 Anaerobic c4-dicarboxylate membrane transporter YPN_3324 IPR023700 Divalent cation tolerance protein CutA, Enterobacteria YPN_3324 IPR004323 Divalent ion tolerance protein, CutA YPN_3324 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPN_3324 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPN_3325 IPR035671 DsbD gamma YPN_3325 IPR003834 Cytochrome C biogenesis protein, transmembrane domain YPN_3325 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain YPN_3325 IPR022910 Thiol:disulphide interchange protein DsbD YPN_3325 IPR013766 Thioredoxin domain YPN_3325 IPR017937 Thioredoxin, conserved site YPN_3325 IPR036249 Thioredoxin-like superfamily YPN_3325 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily YPN_3326 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPN_3326 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPN_3326 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPN_3326 IPR006656 Molybdopterin oxidoreductase YPN_3326 IPR006657 Molybdopterin dinucleotide-binding domain YPN_3326 IPR006478 Formate dehydrogenase, alpha subunit YPN_3326 IPR041924 Formate dehydrogenase H, N-terminal YPN_3326 IPR041925 Formate dehydrogenase H, molybdopterin-binding domain YPN_3326 IPR009010 Aspartate decarboxylase-like domain superfamily YPN_3327 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPN_3327 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPN_3328 IPR023753 FAD/NAD(P)-binding domain YPN_3328 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 YPN_3328 IPR009051 Alpha-helical ferredoxin YPN_3328 IPR028261 Dihydroprymidine dehydrogenase domain II YPN_3328 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPN_3328 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_3328 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPN_3329 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPN_3329 IPR001647 DNA-binding HTH domain, TetR-type YPN_3329 IPR009057 Homeobox-like domain superfamily YPN_3332 IPR008992 Enterotoxin YPN_3333 IPR005063 Transposase, IS1 YPN_3335 IPR004673 L-rhamnose-proton symport, RhaT YPN_3337 IPR018060 DNA binding HTH domain, AraC-type YPN_3337 IPR020449 Transcription regulator HTH, AraC- type YPN_3337 IPR023699 Transcription activator HTH, RhaR YPN_3337 IPR011051 RmlC-like cupin domain superfamily YPN_3337 IPR014710 RmlC-like jelly roll fold YPN_3337 IPR003313 AraC-type arabinose-binding/dimerisation domain YPN_3337 IPR009057 Homeobox-like domain superfamily YPN_3337 IPR018062 HTH domain AraC-type, conserved site YPN_3338 IPR037923 Transcription regulator HTH-like YPN_3338 IPR023609 Transcription regulator HTH, RhaS YPN_3338 IPR020449 Transcription regulator HTH, AraC- type YPN_3338 IPR014710 RmlC-like jelly roll fold YPN_3338 IPR018060 DNA binding HTH domain, AraC-type YPN_3338 IPR003313 AraC-type arabinose-binding/dimerisation domain YPN_3338 IPR009057 Homeobox-like domain superfamily YPN_3340 IPR000577 Carbohydrate kinase, FGGY YPN_3340 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPN_3340 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPN_3340 IPR013449 Rhamnulokinase YPN_3341 IPR036237 Xylose isomerase-like superfamily YPN_3341 IPR009308 Rhamnose isomerase YPN_3342 IPR013447 Rhamnulose-1-phosphate aldolase YPN_3342 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPN_3342 IPR001303 Class II aldolase/adducin N-terminal YPN_3343 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YPN_3343 IPR039697 Iron-type alcohol dehydrogenase-like YPN_3343 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA YPN_3344 IPR008000 Rhamnose/fucose mutarotase YPN_3344 IPR013448 L-rhamnose mutarotase YPN_3344 IPR011008 Dimeric alpha-beta barrel YPN_3345 IPR000424 Primosome PriB/single-strand DNA-binding YPN_3345 IPR011344 Single-stranded DNA-binding protein YPN_3345 IPR012340 Nucleic acid-binding, OB-fold YPN_3346 IPR003439 ABC transporter-like YPN_3346 IPR017871 ABC transporter, conserved site YPN_3346 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3346 IPR004602 UvrABC system subunit A YPN_3346 IPR041552 UvrA DNA-binding domain YPN_3346 IPR041102 UvrA, interaction domain YPN_3347 IPR038056 YjbR-like superfamily YPN_3347 IPR007351 Uncharacterised protein YjbR YPN_3348 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_3348 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_3348 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site YPN_3348 IPR000796 Aspartate/other aminotransferase YPN_3348 IPR004839 Aminotransferase, class I/classII YPN_3348 IPR015424 Pyridoxal phosphate-dependent transferase YPN_3349 IPR011079 Alanine racemase, C-terminal YPN_3349 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site YPN_3349 IPR029066 PLP-binding barrel YPN_3349 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal YPN_3349 IPR000821 Alanine racemase YPN_3349 IPR001608 Alanine racemase, N-terminal YPN_3350 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily YPN_3350 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal YPN_3350 IPR007693 DNA helicase, DnaB-like, N-terminal YPN_3350 IPR007694 DNA helicase, DnaB-like, C-terminal YPN_3350 IPR003593 AAA+ ATPase domain YPN_3350 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3350 IPR007692 DNA helicase, DnaB type YPN_3351 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site YPN_3351 IPR020843 Polyketide synthase, enoylreductase domain YPN_3351 IPR036291 NAD(P)-binding domain superfamily YPN_3351 IPR013149 Alcohol dehydrogenase, C-terminal YPN_3351 IPR013154 Alcohol dehydrogenase, N-terminal YPN_3351 IPR011032 GroES-like superfamily YPN_3352 IPR014318 Phage shock protein, PspG YPN_3353 IPR013785 Aldolase-type TIM barrel YPN_3353 IPR018517 tRNA-dihydrouridine synthase, conserved site YPN_3353 IPR035587 DUS-like, FMN-binding domain YPN_3353 IPR001269 tRNA-dihydrouridine synthase YPN_3353 IPR004653 tRNA-dihydrouridine(20/20a) synthase YPN_3354 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3354 IPR002481 Ferric-uptake regulator YPN_3354 IPR036390 Winged helix DNA-binding domain superfamily YPN_3355 IPR036390 Winged helix DNA-binding domain superfamily YPN_3355 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3355 IPR015927 Peptidase S24/S26A/S26B/S26C YPN_3355 IPR006197 Peptidase S24, LexA-like YPN_3355 IPR006199 LexA repressor, DNA-binding domain YPN_3355 IPR036286 LexA/Signal peptidase-like superfamily YPN_3355 IPR039418 LexA-like YPN_3355 IPR006200 Transcription regulator LexA YPN_3356 IPR036945 Diacylglycerol kinase (DAGK) superfamily YPN_3356 IPR033718 Diacylglycerol kinase, prokaryotic YPN_3356 IPR000829 DAGK family YPN_3357 IPR002123 Phospholipid/glycerol acyltransferase YPN_3357 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB YPN_3357 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase YPN_3357 IPR041728 GPAT/DHAPAT, acyltransferase domain YPN_3358 IPR006370 4-hydroxybenzoate polyprenyltransferase-like YPN_3358 IPR030470 UbiA prenyltransferase conserved site YPN_3358 IPR000537 UbiA prenyltransferase family YPN_3358 IPR039653 Prenyltransferase YPN_3359 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YPN_3359 IPR007440 Chorismate--pyruvate lyase YPN_3360 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPN_3360 IPR011050 Pectin lyase fold/virulence factor YPN_3360 IPR006315 Outer membrane autotransporter barrel YPN_3360 IPR013425 Autotransporter-associated beta strand repeat YPN_3360 IPR036709 Autotransporter beta-domain superfamily YPN_3360 IPR005546 Autotransporter beta-domain YPN_3361 IPR006311 Twin-arginine translocation pathway, signal sequence YPN_3361 IPR006094 FAD linked oxidase, N-terminal YPN_3361 IPR036318 FAD-binding, type PCMH-like superfamily YPN_3361 IPR016166 FAD-binding domain, PCMH-type YPN_3361 IPR012951 Berberine/berberine-like YPN_3364 IPR016147 Pili assembly chaperone, N-terminal YPN_3364 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPN_3364 IPR008962 PapD-like superfamily YPN_3364 IPR013783 Immunoglobulin-like fold YPN_3365 IPR000015 Outer membrane usher protein YPN_3365 IPR042186 Outer membrane usher protein FimD, plug domain YPN_3365 IPR025885 PapC, N-terminal domain YPN_3365 IPR025949 PapC-like, C-terminal domain YPN_3365 IPR037224 PapC, N-terminal domain superfamily YPN_3367 IPR003325 TerD domain YPN_3368 IPR003325 TerD domain YPN_3369 IPR005496 Integral membrane protein TerC YPN_3369 IPR022369 Integral membrane protein TerC, riboswitch-linked YPN_3370 IPR007791 Co-chaperone DjlA, N-terminal YPN_3370 IPR029024 TerB-like YPN_3371 IPR017115 Tellurite resistance, TerA YPN_3371 IPR003325 TerD domain YPN_3372 IPR003325 TerD domain YPN_3376 IPR011215 Phosphoribosyl transferase YPN_3376 IPR028157 PELOTA RNA-binding domain YPN_3378 IPR011233 Tellurite/Phi/PacB toxicity protection, TerW YPN_3380 IPR006638 Elp3/MiaB/NifB YPN_3380 IPR007197 Radical SAM YPN_3380 IPR023404 Radical SAM, alpha/beta horseshoe YPN_3380 IPR034505 Anaerobic coproporphyrinogen-III oxidase YPN_3380 IPR026332 Anaerobilin synthase HutW YPN_3381 IPR010413 Intracellular heme transport protein HutX-like YPN_3382 IPR016040 NAD(P)-binding domain YPN_3382 IPR036291 NAD(P)-binding domain superfamily YPN_3383 IPR019600 Hemin uptake protein HemP YPN_3384 IPR039426 Vitamin B12 transporter BtuB-like YPN_3384 IPR012910 TonB-dependent receptor, plug domain YPN_3384 IPR037066 TonB-dependent receptor, plug domain superfamily YPN_3384 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor YPN_3384 IPR010916 TonB box, conserved site YPN_3384 IPR011276 TonB-dependent haem/haemoglobin receptor YPN_3384 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPN_3384 IPR000531 TonB-dependent receptor-like, beta-barrel YPN_3385 IPR007845 Haemin-degrading HemS/ChuX domain YPN_3386 IPR002491 ABC transporter periplasmic binding domain YPN_3387 IPR000522 ABC transporter, permease protein, BtuC-like YPN_3387 IPR037294 ABC transporter, BtuC-like YPN_3388 IPR003593 AAA+ ATPase domain YPN_3388 IPR003439 ABC transporter-like YPN_3388 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3388 IPR015863 ABC transporter, hemin import, HmuV YPN_3388 IPR017871 ABC transporter, conserved site YPN_3389 IPR015424 Pyridoxal phosphate-dependent transferase YPN_3389 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_3389 IPR006233 Cystathionine beta-lyase, bacterial YPN_3389 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_3389 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YPN_3390 IPR018227 Amino acid/polyamine transporter 2 YPN_3391 IPR036390 Winged helix DNA-binding domain superfamily YPN_3391 IPR000847 Transcription regulator HTH, LysR YPN_3391 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3391 IPR005119 LysR, substrate-binding YPN_3392 IPR001455 TusA-like domain YPN_3392 IPR036868 TusA-like domain superfamily YPN_3393 IPR007272 Sulphur transport domain YPN_3394 IPR006135 Type III secretion system substrate exporter YPN_3394 IPR029025 Type III secretion system substrate exporter, C-terminal YPN_3394 IPR006307 Type III exporter system, secretion apparatus protein BsaZ YPN_3395 IPR006304 Type III secretion protein SpaR/YscT YPN_3395 IPR002010 Type III secretion system inner membrane R protein YPN_3396 IPR006306 Type III secretion protein HrpO YPN_3396 IPR002191 Bacterial export protein family 3 YPN_3397 IPR005838 Type III secretion system inner membrane P protein YPN_3397 IPR005773 Yop virulence translocation protein R YPN_3398 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb YPN_3398 IPR001543 Surface presentation of antigen (SpoA) YPN_3398 IPR036429 SpoA-like superfamily YPN_3398 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO YPN_3401 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3401 IPR013380 ATPase, type III secretion system, H+-transporting YPN_3401 IPR005714 ATPase, type III secretion system, FliI/YscN YPN_3401 IPR003593 AAA+ ATPase domain YPN_3401 IPR040627 T3SS EscN ATPase, C-terminal YPN_3401 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPN_3402 IPR042193 FHIPEP, domain 3 YPN_3402 IPR001712 Type III secretion system FHIPEP YPN_3402 IPR006302 Type III secretion protein HrcV YPN_3402 IPR025505 FHIPEP conserved site YPN_3402 IPR042196 FHIPEP, domain 4 YPN_3403 IPR042196 FHIPEP, domain 4 YPN_3403 IPR042193 FHIPEP, domain 3 YPN_3403 IPR006302 Type III secretion protein HrcV YPN_3403 IPR025505 FHIPEP conserved site YPN_3403 IPR001712 Type III secretion system FHIPEP YPN_3406 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ YPN_3406 IPR006182 Secretory protein YscJ/FliF YPN_3409 IPR009057 Homeobox-like domain superfamily YPN_3409 IPR018060 DNA binding HTH domain, AraC-type YPN_3409 IPR018062 HTH domain AraC-type, conserved site YPN_3409 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like YPN_3413 IPR019247 Histidine kinase BarA, N-terminal YPN_3413 IPR001789 Signal transduction response regulator, receiver domain YPN_3413 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPN_3413 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPN_3413 IPR011006 CheY-like superfamily YPN_3413 IPR005467 Histidine kinase domain YPN_3413 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPN_3413 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPN_3413 IPR003660 HAMP domain YPN_3413 IPR003594 Histidine kinase/HSP90-like ATPase YPN_3413 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_3413 IPR036641 HPT domain superfamily YPN_3414 IPR011006 CheY-like superfamily YPN_3414 IPR000792 Transcription regulator LuxR, C-terminal YPN_3414 IPR001789 Signal transduction response regulator, receiver domain YPN_3414 IPR016032 Signal transduction response regulator, C-terminal effector YPN_3415 IPR018107 Sodium:dicarboxylate symporter, conserved site YPN_3415 IPR001991 Sodium:dicarboxylate symporter YPN_3415 IPR033380 Glutamate-aspartate symport protein GltP/GltT YPN_3415 IPR034703 Proton/glutamate-aspartate symporter GltP YPN_3415 IPR036458 Sodium:dicarboxylate symporter superfamily YPN_3416 IPR025110 AMP-binding enzyme, C-terminal domain YPN_3416 IPR011904 Acetate-CoA ligase YPN_3416 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain YPN_3416 IPR020845 AMP-binding, conserved site YPN_3416 IPR042099 AMP-dependent synthetase-like superfamily YPN_3416 IPR000873 AMP-dependent synthetase/ligase YPN_3417 IPR007436 Protein of unknown function DUF485 YPN_3418 IPR001734 Sodium/solute symporter YPN_3418 IPR038377 Sodium/glucose symporter superfamily YPN_3418 IPR018212 Sodium/solute symporter, conserved site YPN_3418 IPR014083 Cation/acetate symporter ActP YPN_3420 IPR036397 Ribonuclease H superfamily YPN_3420 IPR012337 Ribonuclease H-like superfamily YPN_3420 IPR006120 Resolvase, HTH domain YPN_3420 IPR001584 Integrase, catalytic core YPN_3420 IPR017894 HTH domain, IS21 transposase-type YPN_3421 IPR003593 AAA+ ATPase domain YPN_3421 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3421 IPR002611 IstB-like ATP-binding protein YPN_3421 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_3421 IPR001270 ClpA/B family YPN_3422 IPR036397 Ribonuclease H superfamily YPN_3422 IPR001584 Integrase, catalytic core YPN_3422 IPR025948 HTH-like domain YPN_3422 IPR012337 Ribonuclease H-like superfamily YPN_3423 IPR002514 Transposase IS3/IS911family YPN_3423 IPR009057 Homeobox-like domain superfamily YPN_3425 IPR001584 Integrase, catalytic core YPN_3425 IPR036397 Ribonuclease H superfamily YPN_3425 IPR012337 Ribonuclease H-like superfamily YPN_3425 IPR017894 HTH domain, IS21 transposase-type YPN_3425 IPR006120 Resolvase, HTH domain YPN_3426 IPR003593 AAA+ ATPase domain YPN_3426 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_3426 IPR002611 IstB-like ATP-binding protein YPN_3426 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3426 IPR001270 ClpA/B family YPN_3427 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YPN_3427 IPR040079 Glutathione Transferase family YPN_3427 IPR004045 Glutathione S-transferase, N-terminal YPN_3427 IPR016639 Glutathione S-transferase Omega/GSH YPN_3427 IPR036249 Thioredoxin-like superfamily YPN_3427 IPR010987 Glutathione S-transferase, C-terminal-like YPN_3428 IPR000847 Transcription regulator HTH, LysR YPN_3428 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3428 IPR036390 Winged helix DNA-binding domain superfamily YPN_3428 IPR005119 LysR, substrate-binding YPN_3429 IPR011051 RmlC-like cupin domain superfamily YPN_3429 IPR012093 Pirin YPN_3429 IPR003829 Pirin, N-terminal domain YPN_3429 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain YPN_3429 IPR014710 RmlC-like jelly roll fold YPN_3430 IPR008189 rRNA small subunit methyltransferase I YPN_3430 IPR014776 Tetrapyrrole methylase, subdomain 2 YPN_3430 IPR014777 Tetrapyrrole methylase, subdomain 1 YPN_3430 IPR035996 Tetrapyrrole methylase superfamily YPN_3430 IPR000878 Tetrapyrrole methylase YPN_3430 IPR018063 SAM-dependent methyltransferase RsmI, conserved site YPN_3431 IPR007443 Penicillin-binding protein activator LpoA YPN_3431 IPR011990 Tetratricopeptide-like helical domain superfamily YPN_3431 IPR028082 Periplasmic binding protein-like I YPN_3432 IPR011335 Restriction endonuclease type II-like YPN_3432 IPR011856 tRNA endonuclease-like domain superfamily YPN_3432 IPR003509 Uncharacterised protein family UPF0102 YPN_3433 IPR001347 Sugar isomerase (SIS) YPN_3433 IPR023070 DnaA initiator-associating protein YPN_3433 IPR035461 GmhA/DiaA YPN_3434 IPR007055 BON domain YPN_3434 IPR014004 Transport-associated and nodulation domain, bacteria YPN_3435 IPR001264 Glycosyl transferase, family 51 YPN_3435 IPR023346 Lysozyme-like domain superfamily YPN_3435 IPR011812 Biosynthetic peptidoglycan transglycosylase YPN_3435 IPR036950 Penicillin binding protein transglycosylase domain YPN_3436 IPR026041 Glyoxalase ElbB YPN_3436 IPR029062 Class I glutamine amidotransferase-like YPN_3437 IPR005467 Histidine kinase domain YPN_3437 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_3437 IPR003594 Histidine kinase/HSP90-like ATPase YPN_3437 IPR011006 CheY-like superfamily YPN_3437 IPR027460 Aerobic respiration control sensor protein ArcB, transmembrane domain superfamily YPN_3437 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPN_3437 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPN_3437 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPN_3437 IPR040642 Histidine kinase receptor ArcB, transmembrane domain YPN_3437 IPR036641 HPT domain superfamily YPN_3437 IPR000014 PAS domain YPN_3437 IPR000700 PAS-associated, C-terminal YPN_3437 IPR035965 PAS domain superfamily YPN_3437 IPR013767 PAS fold YPN_3437 IPR001789 Signal transduction response regulator, receiver domain YPN_3437 IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB YPN_3437 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPN_3438 IPR032432 Radical SAM, C-terminal extension YPN_3438 IPR006638 Elp3/MiaB/NifB YPN_3438 IPR039661 ELP3/YhcC YPN_3438 IPR007197 Radical SAM YPN_3438 IPR005911 Protein YhcC-like YPN_3438 IPR023404 Radical SAM, alpha/beta horseshoe YPN_3439 IPR002489 Glutamate synthase, alpha subunit, C-terminal YPN_3439 IPR006982 Glutamate synthase, central-N YPN_3439 IPR002932 Glutamate synthase domain YPN_3439 IPR029055 Nucleophile aminohydrolases, N-terminal YPN_3439 IPR017932 Glutamine amidotransferase type 2 domain YPN_3439 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily YPN_3439 IPR013785 Aldolase-type TIM barrel YPN_3440 IPR009051 Alpha-helical ferredoxin YPN_3440 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 YPN_3440 IPR023753 FAD/NAD(P)-binding domain YPN_3440 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_3440 IPR028261 Dihydroprymidine dehydrogenase domain II YPN_3440 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPN_3442 IPR007481 Stringent starvation protein B YPN_3442 IPR036760 SspB-like superfamily YPN_3443 IPR040079 Glutathione Transferase family YPN_3443 IPR004046 Glutathione S-transferase, C-terminal YPN_3443 IPR034341 Stringent starvation protein A, N-terminal YPN_3443 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YPN_3443 IPR004045 Glutathione S-transferase, N-terminal YPN_3443 IPR010987 Glutathione S-transferase, C-terminal-like YPN_3443 IPR036249 Thioredoxin-like superfamily YPN_3444 IPR020568 Ribosomal protein S5 domain 2-type fold YPN_3444 IPR000754 Ribosomal protein S9 YPN_3444 IPR020574 Ribosomal protein S9, conserved site YPN_3444 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPN_3444 IPR023035 Ribosomal protein S9, bacterial/plastid YPN_3445 IPR005822 Ribosomal protein L13 YPN_3445 IPR036899 Ribosomal protein L13 superfamily YPN_3445 IPR023563 Ribosomal protein L13, conserved site YPN_3445 IPR005823 Ribosomal protein L13, bacterial-type YPN_3446 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3446 IPR030870 Cell division protein ZapE YPN_3446 IPR005654 ATPase, AFG1-like YPN_3447 IPR009386 Protein of unknown function DUF1043 YPN_3448 IPR001478 PDZ domain YPN_3448 IPR001940 Peptidase S1C YPN_3448 IPR036034 PDZ superfamily YPN_3448 IPR011782 Peptidase S1C, Do YPN_3448 IPR009003 Peptidase S1, PA clan YPN_3449 IPR002686 Transposase IS200-like YPN_3449 IPR036515 Transposase IS200-like superfamily YPN_3450 IPR001478 PDZ domain YPN_3450 IPR036034 PDZ superfamily YPN_3450 IPR011783 Peptidase S1C, DegS YPN_3450 IPR009003 Peptidase S1, PA clan YPN_3450 IPR001940 Peptidase S1C YPN_3451 IPR001986 Enolpyruvate transferase domain YPN_3451 IPR036968 Enolpyruvate transferase domain superfamily YPN_3451 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta YPN_3451 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YPN_3452 IPR036065 BolA-like superfamily YPN_3452 IPR002634 BolA protein YPN_3453 IPR036513 STAS domain superfamily YPN_3453 IPR002645 STAS domain YPN_3454 IPR042245 Tgt2/MlaC superfamily YPN_3454 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC YPN_3455 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD YPN_3455 IPR003399 Mce/MlaD YPN_3456 IPR030802 ABC transporter permease MalE YPN_3456 IPR003453 ABC transport permease subunit MlaE, Proteobacteria YPN_3457 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3457 IPR003439 ABC transporter-like YPN_3457 IPR017871 ABC transporter, conserved site YPN_3457 IPR030296 Probable ABC transporter ATP-binding protein MlaF/Mkl YPN_3457 IPR003593 AAA+ ATPase domain YPN_3458 IPR004481 Sodium/potassium/calcium exchanger YPN_3458 IPR004837 Sodium/calcium exchanger membrane region YPN_3459 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type YPN_3459 IPR000644 CBS domain YPN_3459 IPR001347 Sugar isomerase (SIS) YPN_3459 IPR035474 KpsF-like, SIS domain YPN_3460 IPR023214 HAD superfamily YPN_3460 IPR010023 KdsC family YPN_3460 IPR036412 HAD-like superfamily YPN_3461 IPR026265 Lipopolysaccharide export system protein LptC YPN_3461 IPR010664 Lipopolysaccharide assembly, LptC-related YPN_3462 IPR014340 Lipopolysaccharide export system protein LptA YPN_3462 IPR005653 Organic solvent tolerance-like, N-terminal YPN_3463 IPR017871 ABC transporter, conserved site YPN_3463 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3463 IPR030921 LPS export ABC transporter, ATP-binding protein LptB YPN_3463 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal YPN_3463 IPR003439 ABC transporter-like YPN_3463 IPR003593 AAA+ ATPase domain YPN_3464 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily YPN_3464 IPR007634 RNA polymerase sigma factor 54, DNA-binding YPN_3464 IPR000394 RNA polymerase sigma factor 54 YPN_3464 IPR007046 RNA polymerase sigma factor 54, core-binding domain YPN_3465 IPR036567 Ribosome hibernation promotion factor-like YPN_3465 IPR003489 Ribosome hibernation promoting factor/RaiA YPN_3466 IPR036567 Ribosome hibernation promotion factor-like YPN_3466 IPR003489 Ribosome hibernation promoting factor/RaiA YPN_3467 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN YPN_3467 IPR002178 PTS EIIA type-2 domain YPN_3467 IPR016152 Phosphotransferase/anion transporter YPN_3468 IPR005337 RapZ-like family YPN_3468 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3469 IPR000032 Phosphocarrier protein HPr-like YPN_3469 IPR002114 Phosphotransferase system, HPr serine phosphorylation site YPN_3469 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YPN_3469 IPR035895 HPr-like superfamily YPN_3470 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding YPN_3470 IPR006130 Aspartate/ornithine carbamoyltransferase YPN_3470 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily YPN_3470 IPR002082 Aspartate carbamoyltransferase YPN_3470 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain YPN_3471 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal YPN_3471 IPR002801 Aspartate transcarbamylase regulatory subunit YPN_3471 IPR036792 Aspartate carbamoyltransferase regulatory subunit, C-terminal domain superfamily YPN_3471 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily YPN_3471 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal YPN_3472 IPR006056 RidA family YPN_3472 IPR006175 YjgF/YER057c/UK114 family YPN_3472 IPR035959 RutC-like superfamily YPN_3472 IPR019897 RidA, conserved site YPN_3474 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPN_3474 IPR000843 LacI-type HTH domain YPN_3474 IPR028082 Periplasmic binding protein-like I YPN_3474 IPR012771 Trehalose operon repressor YPN_3475 IPR011296 Phosphotransferase system, trehalose-specific IIBC component YPN_3475 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site YPN_3475 IPR013013 Phosphotransferase system, EIIC component, type 1 YPN_3475 IPR003352 Phosphotransferase system, EIIC YPN_3475 IPR036878 Glucose permease domain IIB YPN_3475 IPR001996 Phosphotransferase system, IIB component, type 1 YPN_3475 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component YPN_3476 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPN_3476 IPR013780 Glycosyl hydrolase, all-beta YPN_3476 IPR017853 Glycoside hydrolase superfamily YPN_3476 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) YPN_3476 IPR012769 Trehalose-6-phosphate hydrolase YPN_3477 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal YPN_3477 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain YPN_3477 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily YPN_3477 IPR023459 Transcription elongation factor GreA/GreB family YPN_3477 IPR028625 Regulator of nucleoside diphosphate kinase YPN_3478 IPR009155 Cytochrome b562 YPN_3478 IPR010980 Cytochrome c/b562 YPN_3480 IPR035068 Metalloprotease TldD/PmbA, N-terminal YPN_3480 IPR002510 Metalloprotease TldD/PmbA YPN_3480 IPR036059 Metalloprotease TldD/PmbA superfamily YPN_3481 IPR023153 PSPTO4464-like domain superfamily YPN_3481 IPR006839 Ribosome-associated, YjgA YPN_3482 IPR000468 Barstar (barnase inhibitor) YPN_3482 IPR035905 Barstar-like superfamily YPN_3484 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPN_3484 IPR016161 Aldehyde/histidinol dehydrogenase YPN_3484 IPR016163 Aldehyde dehydrogenase, C-terminal YPN_3484 IPR016160 Aldehyde dehydrogenase, cysteine active site YPN_3484 IPR016162 Aldehyde dehydrogenase, N-terminal YPN_3484 IPR015590 Aldehyde dehydrogenase domain YPN_3484 IPR010102 Succinate semialdehyde dehydrogenase YPN_3485 IPR016161 Aldehyde/histidinol dehydrogenase YPN_3485 IPR015590 Aldehyde dehydrogenase domain YPN_3485 IPR016162 Aldehyde dehydrogenase, N-terminal YPN_3485 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPN_3485 IPR016160 Aldehyde dehydrogenase, cysteine active site YPN_3485 IPR016163 Aldehyde dehydrogenase, C-terminal YPN_3485 IPR010102 Succinate semialdehyde dehydrogenase YPN_3486 IPR023706 Para-hydroxybenzoic acid efflux pump, subunit AaeB YPN_3486 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein YPN_3487 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YPN_3487 IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA YPN_3487 IPR006143 RND efflux pump, membrane fusion protein YPN_3488 IPR012451 Protein of unknown function DUF1656 YPN_3489 IPR005119 LysR, substrate-binding YPN_3489 IPR000847 Transcription regulator HTH, LysR YPN_3489 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3489 IPR036390 Winged helix DNA-binding domain superfamily YPN_3490 IPR036390 Winged helix DNA-binding domain superfamily YPN_3490 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3490 IPR005119 LysR, substrate-binding YPN_3490 IPR000847 Transcription regulator HTH, LysR YPN_3492 IPR041079 Neuraminidase-like domain YPN_3492 IPR040840 Tc toxin complex TcA, C-terminal TcB-binding domain YPN_3493 IPR022045 Insecticide toxin TcdB middle/N-terminal YPN_3493 IPR003284 Salmonella virulence plasmid 65kDa B protein YPN_3493 IPR022044 Insecticide toxin TcdB middle/C-terminal YPN_3497 IPR022385 Rhs repeat-associated core YPN_3497 IPR008430 Cytotoxic necrotizing factor, Rho-activating domain YPN_3497 IPR041508 Toxin complex C-like repeat YPN_3497 IPR011324 Cytotoxic necrotizing factor-like, catalytic YPN_3497 IPR037040 Cytotoxic necrotizing factor, Rho-activating domain superfamily YPN_3498 IPR022385 Rhs repeat-associated core YPN_3498 IPR041508 Toxin complex C-like repeat YPN_3498 IPR025968 YwqJ-like deaminase YPN_3499 IPR025502 TldD YPN_3499 IPR036059 Metalloprotease TldD/PmbA superfamily YPN_3499 IPR035068 Metalloprotease TldD/PmbA, N-terminal YPN_3499 IPR002510 Metalloprotease TldD/PmbA YPN_3500 IPR001110 Uncharacterised protein family UPF0012, conserved site YPN_3500 IPR036526 Carbon-nitrogen hydrolase superfamily YPN_3500 IPR003010 Carbon-nitrogen hydrolase YPN_3501 IPR011836 Conserved hypothetical protein CHP02099 YPN_3501 IPR032712 AsmA-like, C-terminal YPN_3501 IPR025263 Domain of unknown function DUF3971 YPN_3502 IPR012340 Nucleic acid-binding, OB-fold YPN_3502 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G YPN_3502 IPR004659 Ribonuclease E/G YPN_3502 IPR022967 RNA-binding domain, S1 YPN_3502 IPR003029 S1 domain YPN_3503 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein YPN_3503 IPR029001 Inosine triphosphate pyrophosphatase-like YPN_3504 IPR026034 Cell shape-determining protein MreD, proteobacterial type YPN_3504 IPR007227 Cell shape-determining protein MreD YPN_3505 IPR007221 Rod shape-determining protein MreC YPN_3505 IPR042177 Cell/Rod shape-determining protein MreC, domain 1 YPN_3505 IPR042175 Cell/Rod shape-determining protein MreC, domain 2 YPN_3506 IPR004753 Cell shape determining protein MreB YPN_3507 IPR001633 EAL domain YPN_3507 IPR029787 Nucleotide cyclase YPN_3507 IPR033423 Gammaproteobacterial periplasmic sensor domain GAPES4 YPN_3507 IPR000160 GGDEF domain YPN_3507 IPR035919 EAL domain superfamily YPN_3508 IPR013154 Alcohol dehydrogenase, N-terminal YPN_3508 IPR011032 GroES-like superfamily YPN_3508 IPR036291 NAD(P)-binding domain superfamily YPN_3508 IPR014188 Acrylyl-CoA reductase AcuI YPN_3508 IPR020843 Polyketide synthase, enoylreductase domain YPN_3508 IPR013149 Alcohol dehydrogenase, C-terminal YPN_3509 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily YPN_3509 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP YPN_3509 IPR000572 Oxidoreductase, molybdopterin-binding domain YPN_3510 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ YPN_3510 IPR013130 Ferric reductase transmembrane component-like domain YPN_3511 IPR036441 Dehydroquinase, class II superfamily YPN_3511 IPR018509 Dehydroquinase, class II, conserved site YPN_3511 IPR001874 Dehydroquinase, class II YPN_3512 IPR011053 Single hybrid motif YPN_3512 IPR000089 Biotin/lipoyl attachment YPN_3512 IPR001882 Biotin-binding site YPN_3512 IPR001249 Acetyl-CoA biotin carboxyl carrier YPN_3513 IPR016185 Pre-ATP-grasp domain superfamily YPN_3513 IPR005482 Biotin carboxylase, C-terminal YPN_3513 IPR011054 Rudiment single hybrid motif YPN_3513 IPR011764 Biotin carboxylation domain YPN_3513 IPR005481 Biotin carboxylase-like, N-terminal domain YPN_3513 IPR013815 ATP-grasp fold, subdomain 1 YPN_3513 IPR011761 ATP-grasp fold YPN_3513 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase YPN_3513 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain YPN_3514 IPR010398 Protein of unknown function DUF997 YPN_3515 IPR011849 Sodium/pantothenate symporter YPN_3515 IPR001734 Sodium/solute symporter YPN_3515 IPR018212 Sodium/solute symporter, conserved site YPN_3515 IPR038377 Sodium/glucose symporter superfamily YPN_3516 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_3516 IPR004498 Ribosomal protein L11 methyltransferase YPN_3517 IPR013785 Aldolase-type TIM barrel YPN_3517 IPR032887 tRNA-dihydrouridine synthase B YPN_3517 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal YPN_3517 IPR018517 tRNA-dihydrouridine synthase, conserved site YPN_3517 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 YPN_3517 IPR035587 DUS-like, FMN-binding domain YPN_3517 IPR001269 tRNA-dihydrouridine synthase YPN_3518 IPR002197 DNA binding HTH domain, Fis-type YPN_3518 IPR009057 Homeobox-like domain superfamily YPN_3518 IPR005412 DNA-binding protein Fis YPN_3521 IPR011701 Major facilitator superfamily YPN_3521 IPR005829 Sugar transporter, conserved site YPN_3521 IPR020846 Major facilitator superfamily domain YPN_3521 IPR036259 MFS transporter superfamily YPN_3521 IPR004736 MFS transporter, metabolite:H symporter YPN_3522 IPR012788 4-carboxymuconolactone decarboxylase YPN_3522 IPR029032 AhpD-like YPN_3522 IPR003779 Carboxymuconolactone decarboxylase-like YPN_3523 IPR036291 NAD(P)-binding domain superfamily YPN_3523 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site YPN_3523 IPR015815 3-hydroxyisobutyrate dehydrogenase-related YPN_3523 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain YPN_3523 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding YPN_3523 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPN_3523 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPN_3524 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPN_3524 IPR001279 Metallo-beta-lactamase YPN_3525 IPR008816 Glycine zipper 2TM domain YPN_3526 IPR012156 Cold shock, CspA YPN_3526 IPR019844 Cold-shock (CSD) domain YPN_3526 IPR002059 Cold-shock protein, DNA-binding YPN_3526 IPR012340 Nucleic acid-binding, OB-fold YPN_3526 IPR011129 Cold shock domain YPN_3527 IPR012156 Cold shock, CspA YPN_3527 IPR011129 Cold shock domain YPN_3527 IPR012340 Nucleic acid-binding, OB-fold YPN_3527 IPR019844 Cold-shock (CSD) domain YPN_3527 IPR002059 Cold-shock protein, DNA-binding YPN_3528 IPR036515 Transposase IS200-like superfamily YPN_3528 IPR002686 Transposase IS200-like YPN_3531 IPR040079 Glutathione Transferase family YPN_3531 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YPN_3531 IPR036249 Thioredoxin-like superfamily YPN_3531 IPR010987 Glutathione S-transferase, C-terminal-like YPN_3531 IPR004045 Glutathione S-transferase, N-terminal YPN_3532 IPR035474 KpsF-like, SIS domain YPN_3532 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type YPN_3532 IPR001347 Sugar isomerase (SIS) YPN_3532 IPR000644 CBS domain YPN_3533 IPR005929 Ribulokinase YPN_3533 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPN_3533 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPN_3533 IPR000577 Carbohydrate kinase, FGGY YPN_3535 IPR001851 ABC transporter, permease YPN_3536 IPR017871 ABC transporter, conserved site YPN_3536 IPR003439 ABC transporter-like YPN_3536 IPR003593 AAA+ ATPase domain YPN_3536 IPR015861 ABC transporter, ribose import, RbsA YPN_3536 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3538 IPR030857 Lipid A biosynthesis palmitoleoyltransferase, LpxP YPN_3538 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase YPN_3538 IPR004960 Bacterial lipid A biosynthesis acyltransferase YPN_3540 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria YPN_3540 IPR018422 Cation/H+ exchanger, CPA1 family YPN_3540 IPR006153 Cation/H+ exchanger YPN_3540 IPR038770 Sodium/solute symporter superfamily YPN_3541 IPR006043 Xanthine/uracil/vitamin C permease YPN_3542 IPR013321 Arc-type ribbon-helix-helix YPN_3542 IPR026262 Antitoxin DinJ YPN_3542 IPR007337 RelB antitoxin/Antitoxin DinJ YPN_3543 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3543 IPR017875 Aliphatic sulfonates import ATP-binding protein SsuB YPN_3543 IPR003593 AAA+ ATPase domain YPN_3543 IPR003439 ABC transporter-like YPN_3543 IPR017871 ABC transporter, conserved site YPN_3544 IPR035906 MetI-like superfamily YPN_3544 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_3545 IPR036661 Luciferase-like domain superfamily YPN_3545 IPR011251 Luciferase-like domain YPN_3545 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent YPN_3546 IPR015168 SsuA/THI5-like YPN_3546 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPN_3546 IPR010067 Aliphatic sulfonates-binding protein YPN_3547 IPR005025 NADPH-dependent FMN reductase-like YPN_3547 IPR029039 Flavoprotein-like superfamily YPN_3547 IPR020048 NADPH-dependent FMN reductase, SsuE YPN_3549 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPN_3549 IPR011877 Ribokinase YPN_3549 IPR011611 Carbohydrate kinase PfkB YPN_3549 IPR002139 Ribokinase/fructokinase YPN_3549 IPR029056 Ribokinase-like YPN_3550 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU YPN_3550 IPR023750 RbsD-like superfamily YPN_3550 IPR023064 D-ribose pyranase YPN_3551 IPR011051 RmlC-like cupin domain superfamily YPN_3551 IPR014710 RmlC-like jelly roll fold YPN_3551 IPR018060 DNA binding HTH domain, AraC-type YPN_3551 IPR003313 AraC-type arabinose-binding/dimerisation domain YPN_3551 IPR009057 Homeobox-like domain superfamily YPN_3552 IPR004104 Oxidoreductase, C-terminal YPN_3552 IPR036291 NAD(P)-binding domain superfamily YPN_3552 IPR000683 Oxidoreductase, N-terminal YPN_3555 IPR031325 RHS repeat YPN_3555 IPR006530 YD repeat YPN_3555 IPR001826 RHS protein YPN_3555 IPR022385 Rhs repeat-associated core YPN_3557 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPN_3557 IPR006531 Gp5 N-terminal YPN_3557 IPR037026 Vgr protein, OB-fold domain superfamily YPN_3557 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPN_3563 IPR025479 Domain of unknown function DUF4329 YPN_3563 IPR001826 RHS protein YPN_3563 IPR006530 YD repeat YPN_3563 IPR022385 Rhs repeat-associated core YPN_3563 IPR031325 RHS repeat YPN_3566 IPR006531 Gp5 N-terminal YPN_3566 IPR037026 Vgr protein, OB-fold domain superfamily YPN_3566 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPN_3566 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPN_3573 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3573 IPR017729 Type VI secretion system, ATPase ClpV1 YPN_3573 IPR001270 ClpA/B family YPN_3573 IPR004176 Clp, N-terminal YPN_3573 IPR036628 Clp, N-terminal domain superfamily YPN_3573 IPR019489 Clp ATPase, C-terminal YPN_3573 IPR018368 ClpA/B, conserved site 1 YPN_3573 IPR041546 ClpA/ClpB, AAA lid domain YPN_3573 IPR003593 AAA+ ATPase domain YPN_3573 IPR003959 ATPase, AAA-type, core YPN_3581 IPR025948 HTH-like domain YPN_3581 IPR038965 Transposase InsF-like YPN_3581 IPR036397 Ribonuclease H superfamily YPN_3581 IPR012337 Ribonuclease H-like superfamily YPN_3581 IPR001584 Integrase, catalytic core YPN_3585 IPR006076 FAD dependent oxidoreductase YPN_3585 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase YPN_3585 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_3585 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily YPN_3585 IPR031656 Alpha-glycerophosphate oxidase, C-terminal YPN_3586 IPR011833 Glycogen/starch/alpha-glucan phosphorylase YPN_3586 IPR035090 Phosphorylase pyridoxal-phosphate attachment site YPN_3586 IPR000811 Glycosyl transferase, family 35 YPN_3587 IPR011835 Bacterial/plant glycogen synthase YPN_3587 IPR013534 Starch synthase, catalytic domain YPN_3587 IPR001296 Glycosyl transferase, family 1 YPN_3588 IPR011004 Trimeric LpxA-like superfamily YPN_3588 IPR029044 Nucleotide-diphospho-sugar transferases YPN_3588 IPR011831 Glucose-1-phosphate adenylyltransferase YPN_3588 IPR005835 Nucleotidyl transferase domain YPN_3588 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial YPN_3588 IPR005836 ADP-glucose pyrophosphorylase, conserved site YPN_3589 IPR004193 Glycoside hydrolase, family 13, N-terminal YPN_3589 IPR013783 Immunoglobulin-like fold YPN_3589 IPR017853 Glycoside hydrolase superfamily YPN_3589 IPR011837 Glycogen debranching enzyme, GlgX type YPN_3589 IPR014756 Immunoglobulin E-set YPN_3589 IPR022844 Glycogen debranching enzyme, bacterial YPN_3589 IPR013780 Glycosyl hydrolase, all-beta YPN_3589 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPN_3589 IPR040784 Glycogen debranching enzyme, C-terminal domain YPN_3590 IPR013783 Immunoglobulin-like fold YPN_3590 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta YPN_3590 IPR017853 Glycoside hydrolase superfamily YPN_3590 IPR037439 1,4-alpha-glucan-branching enzyme YPN_3590 IPR014756 Immunoglobulin E-set YPN_3590 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPN_3590 IPR004193 Glycoside hydrolase, family 13, N-terminal YPN_3590 IPR013780 Glycosyl hydrolase, all-beta YPN_3590 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB YPN_3591 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_3591 IPR010559 Signal transduction histidine kinase, internal region YPN_3591 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region YPN_3591 IPR003018 GAF domain YPN_3592 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPN_3592 IPR015217 Invasin, domain 3 YPN_3592 IPR016186 C-type lectin-like/link domain superfamily YPN_3592 IPR016187 C-type lectin fold YPN_3592 IPR003535 Intimin/invasin bacterial adhesion mediator protein YPN_3592 IPR013783 Immunoglobulin-like fold YPN_3592 IPR038177 Inverse autotransporter, beta-domain superfamily YPN_3592 IPR008964 Invasin/intimin cell-adhesion fragments YPN_3592 IPR013117 Intimin, C-terminal YPN_3592 IPR024519 Inverse autotransporter, beta-domain YPN_3597 IPR012280 Semialdehyde dehydrogenase, dimerisation domain YPN_3597 IPR012080 Aspartate-semialdehyde dehydrogenase YPN_3597 IPR036291 NAD(P)-binding domain superfamily YPN_3597 IPR000534 Semialdehyde dehydrogenase, NAD-binding YPN_3597 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type YPN_3597 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site YPN_3598 IPR002771 Multiple antibiotic resistance (MarC)-related YPN_3602 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3602 IPR031322 Shikimate kinase/gluconokinase YPN_3602 IPR006001 Carbohydrate kinase, thermoresistant glucokinase YPN_3603 IPR003474 Gluconate transporter YPN_3604 IPR000843 LacI-type HTH domain YPN_3604 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPN_3604 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPN_3604 IPR028082 Periplasmic binding protein-like I YPN_3605 IPR014710 RmlC-like jelly roll fold YPN_3605 IPR011051 RmlC-like cupin domain superfamily YPN_3605 IPR012093 Pirin YPN_3605 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain YPN_3605 IPR003829 Pirin, N-terminal domain YPN_3607 IPR001867 OmpR/PhoB-type DNA-binding domain YPN_3607 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3607 IPR016032 Signal transduction response regulator, C-terminal effector YPN_3607 IPR001789 Signal transduction response regulator, receiver domain YPN_3607 IPR039420 Transcriptional regulatory protein WalR-like YPN_3607 IPR011006 CheY-like superfamily YPN_3609 IPR000771 Fructose-bisphosphate aldolase, class-II YPN_3609 IPR011289 Fructose-1,6-bisphosphate aldolase, class 2 YPN_3609 IPR013785 Aldolase-type TIM barrel YPN_3611 IPR028082 Periplasmic binding protein-like I YPN_3611 IPR025997 Periplasmic binding protein YPN_3612 IPR001851 ABC transporter, permease YPN_3613 IPR003593 AAA+ ATPase domain YPN_3613 IPR003439 ABC transporter-like YPN_3613 IPR015861 ABC transporter, ribose import, RbsA YPN_3613 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3613 IPR017871 ABC transporter, conserved site YPN_3614 IPR005467 Histidine kinase domain YPN_3614 IPR003594 Histidine kinase/HSP90-like ATPase YPN_3614 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPN_3614 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPN_3614 IPR000014 PAS domain YPN_3614 IPR035965 PAS domain superfamily YPN_3614 IPR013656 PAS fold-4 YPN_3614 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_3614 IPR011006 CheY-like superfamily YPN_3614 IPR001789 Signal transduction response regulator, receiver domain YPN_3614 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPN_3615 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_3615 IPR004792 3-Dehydro-bile acid delta(4,6)-reductase-like YPN_3615 IPR023166 HI0933-like insert domain superfamily YPN_3616 IPR001204 Phosphate transporter YPN_3618 IPR019598 Universal stress protein B YPN_3619 IPR006015 Universal stress protein A family YPN_3619 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_3619 IPR006016 UspA YPN_3620 IPR033922 NAD(P) binding domain of glutamate dehydrogenase YPN_3620 IPR036291 NAD(P)-binding domain superfamily YPN_3620 IPR014362 Glutamate dehydrogenase YPN_3620 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain YPN_3620 IPR033524 Leu/Phe/Val dehydrogenases active site YPN_3620 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase YPN_3620 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal YPN_3621 IPR034033 Serralysin-like metallopeptidase domain YPN_3621 IPR006026 Peptidase, metallopeptidase YPN_3621 IPR024079 Metallopeptidase, catalytic domain superfamily YPN_3621 IPR001343 RTX calcium-binding nonapeptide repeat YPN_3621 IPR016294 Peptidase M10B YPN_3621 IPR001818 Peptidase M10, metallopeptidase YPN_3621 IPR011049 Serralysin-like metalloprotease, C-terminal YPN_3621 IPR013858 Peptidase M10 serralysin, C-terminal YPN_3621 IPR018511 Hemolysin-type calcium-binding conserved site YPN_3622 IPR007536 Ribosomal RNA small subunit methyltransferase J YPN_3622 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_3623 IPR001567 Peptidase M3A/M3B catalytic domain YPN_3623 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 YPN_3625 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPN_3625 IPR007473 Ribosomal RNA large subunit methyltransferase J YPN_3625 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_3626 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site YPN_3626 IPR006322 Glutathione reductase, eukaryote/bacterial YPN_3626 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPN_3626 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily YPN_3626 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I YPN_3626 IPR023753 FAD/NAD(P)-binding domain YPN_3626 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_3627 IPR041522 CdaR, GGDEF-like domain YPN_3627 IPR025736 PucR C-terminal helix-turn-helix domain YPN_3627 IPR042070 PucR C-terminal helix-turn-helix domain superfamily YPN_3627 IPR008599 Putative sugar diacid recognition YPN_3629 IPR003474 Gluconate transporter YPN_3630 IPR036129 Glycerate kinase superfamily YPN_3630 IPR018197 Glycerate kinase, restriction-enzyme-like fold YPN_3630 IPR004381 Glycerate kinase YPN_3630 IPR018193 Glycerate kinase, flavodoxin-like fold YPN_3635 IPR017039 Virulence factor BrkB YPN_3635 IPR005274 Inner membrane protein YhjD YPN_3636 IPR038433 CDP-diacylglycerol pyrophosphatase superfamily YPN_3636 IPR036265 HIT-like superfamily YPN_3636 IPR003763 CDP-diacylglycerol pyrophosphatase YPN_3637 IPR007844 AsmA YPN_3638 IPR035919 EAL domain superfamily YPN_3638 IPR001633 EAL domain YPN_3639 IPR004370 4-oxalocrotonate tautomerase YPN_3639 IPR014347 Tautomerase/MIF superfamily YPN_3639 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type YPN_3640 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPN_3640 IPR011611 Carbohydrate kinase PfkB YPN_3640 IPR029056 Ribokinase-like YPN_3641 IPR011765 Peptidase M16, N-terminal YPN_3641 IPR007863 Peptidase M16, C-terminal YPN_3641 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like YPN_3642 IPR018107 Sodium:dicarboxylate symporter, conserved site YPN_3642 IPR036458 Sodium:dicarboxylate symporter superfamily YPN_3642 IPR023954 C4-dicarboxylate transport protein YPN_3642 IPR001991 Sodium:dicarboxylate symporter YPN_3644 IPR010702 Periplasmic pectate lyase YPN_3645 IPR009331 Oligogalacturonate-specific porin YPN_3646 IPR003660 HAMP domain YPN_3646 IPR029787 Nucleotide cyclase YPN_3646 IPR035919 EAL domain superfamily YPN_3646 IPR033419 Gammaproteobacterial periplasmic sensor domain GAPES3 YPN_3646 IPR000160 GGDEF domain YPN_3646 IPR001633 EAL domain YPN_3647 IPR002037 Glycoside hydrolase, family 8 YPN_3647 IPR019834 Glycoside hydrolase, family 8, conserved site YPN_3647 IPR008928 Six-hairpin glycosidase superfamily YPN_3647 IPR012341 Six-hairpin glycosidase-like superfamily YPN_3648 IPR017871 ABC transporter, conserved site YPN_3648 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPN_3648 IPR003439 ABC transporter-like YPN_3648 IPR003593 AAA+ ATPase domain YPN_3648 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3649 IPR003439 ABC transporter-like YPN_3649 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3649 IPR017871 ABC transporter, conserved site YPN_3649 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPN_3649 IPR003593 AAA+ ATPase domain YPN_3650 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_3650 IPR035906 MetI-like superfamily YPN_3650 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPN_3651 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_3651 IPR035906 MetI-like superfamily YPN_3652 IPR023765 Solute-binding protein family 5, conserved site YPN_3652 IPR030678 Peptide/nickel binding protein, MppA-type YPN_3652 IPR039424 Solute-binding protein family 5 YPN_3652 IPR000914 Solute-binding protein family 5 domain YPN_3653 IPR027282 Two partner secretion pathway transporter YPN_3653 IPR013686 Polypeptide-transport-associated, ShlB-type YPN_3653 IPR005565 Haemolysin activator HlyB, C-terminal YPN_3653 IPR035251 ShlB, POTRA domain YPN_3653 IPR034746 POTRA domain YPN_3654 IPR006914 VENN motif-containing domain YPN_3654 IPR008638 Filamentous haemagglutinin, N-terminal YPN_3654 IPR012334 Pectin lyase fold YPN_3654 IPR011050 Pectin lyase fold/virulence factor YPN_3654 IPR006626 Parallel beta-helix repeat YPN_3654 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPN_3654 IPR008619 Filamentous haemagglutinin repeat YPN_3654 IPR025157 Hemagglutinin repeat YPN_3655 IPR020846 Major facilitator superfamily domain YPN_3655 IPR021159 Glycerate/sugar phosphate transporter, conserved site YPN_3655 IPR036259 MFS transporter superfamily YPN_3655 IPR000849 Sugar phosphate transporter YPN_3655 IPR011701 Major facilitator superfamily YPN_3656 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain YPN_3656 IPR007895 MASE1 YPN_3656 IPR005467 Histidine kinase domain YPN_3656 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_3656 IPR003594 Histidine kinase/HSP90-like ATPase YPN_3657 IPR003593 AAA+ ATPase domain YPN_3657 IPR002611 IstB-like ATP-binding protein YPN_3657 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3657 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_3657 IPR001270 ClpA/B family YPN_3658 IPR017894 HTH domain, IS21 transposase-type YPN_3658 IPR036397 Ribonuclease H superfamily YPN_3658 IPR012337 Ribonuclease H-like superfamily YPN_3658 IPR006120 Resolvase, HTH domain YPN_3658 IPR001584 Integrase, catalytic core YPN_3659 IPR007895 MASE1 YPN_3659 IPR005467 Histidine kinase domain YPN_3659 IPR003594 Histidine kinase/HSP90-like ATPase YPN_3659 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain YPN_3659 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_3660 IPR001789 Signal transduction response regulator, receiver domain YPN_3660 IPR011006 CheY-like superfamily YPN_3660 IPR000792 Transcription regulator LuxR, C-terminal YPN_3660 IPR016032 Signal transduction response regulator, C-terminal effector YPN_3661 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPN_3661 IPR012549 Phosphoethanolamine transferase, N-terminal YPN_3661 IPR040423 Phosphoethanolamine transferase YPN_3661 IPR000917 Sulfatase, N-terminal YPN_3662 IPR029058 Alpha/Beta hydrolase fold YPN_3662 IPR022742 Serine aminopeptidase, S33 YPN_3662 IPR012354 Esterase/lipase YPN_3663 IPR004840 Amino acid permease, conserved site YPN_3663 IPR004841 Amino acid permease/ SLC12A domain YPN_3664 IPR024083 Fumarase/histidase, N-terminal YPN_3664 IPR001106 Aromatic amino acid lyase YPN_3664 IPR005921 Histidine ammonia-lyase YPN_3664 IPR008948 L-Aspartase-like YPN_3664 IPR022313 Phenylalanine/histidine ammonia-lyases, active site YPN_3665 IPR038364 Urocanase, central domain superfamily YPN_3665 IPR023637 Urocanase YPN_3665 IPR035400 Urocanase, N-terminal domain YPN_3665 IPR036190 Urocanase superfamily YPN_3665 IPR035085 Urocanase, Rossmann-like domain YPN_3665 IPR023636 Urocanase conserved site YPN_3665 IPR035401 Urocanase, C-terminal domain YPN_3666 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPN_3666 IPR001926 Pyridoxal-phosphate dependent enzyme YPN_3666 IPR005856 Cysteine synthase YPN_3666 IPR005858 Cysteine synthase CysM YPN_3666 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site YPN_3667 IPR029057 Phosphoribosyltransferase-like YPN_3667 IPR000836 Phosphoribosyltransferase domain YPN_3667 IPR005764 Adenine phosphoribosyl transferase YPN_3669 IPR011761 ATP-grasp fold YPN_3670 IPR033870 FatB domain YPN_3670 IPR002491 ABC transporter periplasmic binding domain YPN_3671 IPR037294 ABC transporter, BtuC-like YPN_3671 IPR000522 ABC transporter, permease protein, BtuC-like YPN_3672 IPR037294 ABC transporter, BtuC-like YPN_3672 IPR000522 ABC transporter, permease protein, BtuC-like YPN_3673 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3673 IPR003439 ABC transporter-like YPN_3673 IPR017871 ABC transporter, conserved site YPN_3673 IPR003593 AAA+ ATPase domain YPN_3677 IPR025668 Transposase DDE domain YPN_3678 IPR025668 Transposase DDE domain YPN_3680 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPN_3680 IPR013762 Integrase-like, catalytic domain superfamily YPN_3680 IPR002104 Integrase, catalytic domain YPN_3680 IPR004107 Integrase, SAM-like, N-terminal YPN_3680 IPR038488 Integrase, DNA-binding domain superfamily YPN_3680 IPR025166 Integrase, DNA-binding domain YPN_3680 IPR010998 Integrase/recombinase, N-terminal YPN_3681 IPR020449 Transcription regulator HTH, AraC- type YPN_3681 IPR018060 DNA binding HTH domain, AraC-type YPN_3681 IPR009057 Homeobox-like domain superfamily YPN_3681 IPR018062 HTH domain AraC-type, conserved site YPN_3681 IPR028082 Periplasmic binding protein-like I YPN_3682 IPR001851 ABC transporter, permease YPN_3683 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3683 IPR017871 ABC transporter, conserved site YPN_3683 IPR003439 ABC transporter-like YPN_3683 IPR003593 AAA+ ATPase domain YPN_3683 IPR013455 ABC transporter, D-xylose, ATP-binding protein YPN_3684 IPR013456 D-xylose ABC transporter, substrate-binding protein YPN_3684 IPR028082 Periplasmic binding protein-like I YPN_3684 IPR025997 Periplasmic binding protein YPN_3685 IPR001998 Xylose isomerase YPN_3685 IPR013452 Xylose isomerase, bacterial-type YPN_3685 IPR036237 Xylose isomerase-like superfamily YPN_3686 IPR018483 Carbohydrate kinase, FGGY, conserved site YPN_3686 IPR006000 Xylulokinase YPN_3686 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPN_3686 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPN_3686 IPR000577 Carbohydrate kinase, FGGY YPN_3688 IPR013783 Immunoglobulin-like fold YPN_3688 IPR016147 Pili assembly chaperone, N-terminal YPN_3688 IPR018046 Pili assembly chaperone, conserved site YPN_3688 IPR016148 Pili assembly chaperone, C-terminal YPN_3688 IPR001829 Pili assembly chaperone, bacterial YPN_3688 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPN_3688 IPR008962 PapD-like superfamily YPN_3689 IPR037224 PapC, N-terminal domain superfamily YPN_3689 IPR025885 PapC, N-terminal domain YPN_3689 IPR025949 PapC-like, C-terminal domain YPN_3689 IPR042186 Outer membrane usher protein FimD, plug domain YPN_3689 IPR018030 Fimbrial membrane usher, conserved site YPN_3689 IPR000015 Outer membrane usher protein YPN_3690 IPR025885 PapC, N-terminal domain YPN_3690 IPR025949 PapC-like, C-terminal domain YPN_3690 IPR042186 Outer membrane usher protein FimD, plug domain YPN_3690 IPR018030 Fimbrial membrane usher, conserved site YPN_3690 IPR037224 PapC, N-terminal domain superfamily YPN_3690 IPR000015 Outer membrane usher protein YPN_3691 IPR000259 Fimbrial-type adhesion domain YPN_3691 IPR036937 Fimbrial-type adhesion domain superfamily YPN_3691 IPR008966 Adhesion domain superfamily YPN_3692 IPR002656 Acyltransferase 3 YPN_3692 IPR032905 O-acetyltransferase WecH YPN_3694 IPR025948 HTH-like domain YPN_3694 IPR038965 Transposase InsF-like YPN_3694 IPR001584 Integrase, catalytic core YPN_3694 IPR012337 Ribonuclease H-like superfamily YPN_3694 IPR036397 Ribonuclease H superfamily YPN_3695 IPR011701 Major facilitator superfamily YPN_3695 IPR020846 Major facilitator superfamily domain YPN_3695 IPR036259 MFS transporter superfamily YPN_3699 IPR002513 Tn3 transposase DDE domain YPN_3699 IPR025296 Domain of unknown function DUF4158 YPN_3700 IPR036390 Winged helix DNA-binding domain superfamily YPN_3700 IPR009000 Translation protein, beta-barrel domain superfamily YPN_3700 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3700 IPR031157 Tr-type G domain, conserved site YPN_3700 IPR015191 Translation elongation factor SelB, winged helix, type 3 YPN_3700 IPR015190 Translation elongation factor SelB, winged helix, type 2 YPN_3700 IPR004161 Translation elongation factor EFTu-like, domain 2 YPN_3700 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3700 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPN_3700 IPR000795 Transcription factor, GTP-binding domain YPN_3700 IPR004535 Translation elongation factor, selenocysteine-specific YPN_3701 IPR018319 L-seryl-tRNA selenium transferase-like YPN_3701 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_3701 IPR004534 L-seryl-tRNA(Sec) selenium transferase YPN_3701 IPR015424 Pyridoxal phosphate-dependent transferase YPN_3701 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain YPN_3702 IPR024064 FdhE-like superfamily YPN_3702 IPR006452 Formate dehydrogenase accessory protein YPN_3703 IPR016174 Di-haem cytochrome, transmembrane YPN_3703 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase YPN_3703 IPR006471 Formate dehydrogenase, gamma subunit YPN_3704 IPR015246 Formate dehydrogenase, transmembrane YPN_3704 IPR014603 Formate dehydrogenase iron-sulphur subunit YPN_3704 IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria YPN_3704 IPR038384 Formate dehydrogenase, C-terminal domain superfamily YPN_3704 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPN_3704 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPN_3705 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPN_3705 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPN_3705 IPR006656 Molybdopterin oxidoreductase YPN_3705 IPR006657 Molybdopterin dinucleotide-binding domain YPN_3705 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPN_3705 IPR006443 Formate dehydrogenase-N, alpha subunit YPN_3705 IPR009010 Aspartate decarboxylase-like domain superfamily YPN_3705 IPR006311 Twin-arginine translocation pathway, signal sequence YPN_3706 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPN_3706 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPN_3706 IPR006657 Molybdopterin dinucleotide-binding domain YPN_3706 IPR009010 Aspartate decarboxylase-like domain superfamily YPN_3706 IPR006443 Formate dehydrogenase-N, alpha subunit YPN_3706 IPR006311 Twin-arginine translocation pathway, signal sequence YPN_3706 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPN_3706 IPR006656 Molybdopterin oxidoreductase YPN_3707 IPR016193 Cytidine deaminase-like YPN_3707 IPR003786 Sulfur carrier protein FdhD YPN_3708 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily YPN_3708 IPR019832 Manganese/iron superoxide dismutase, C-terminal YPN_3708 IPR019831 Manganese/iron superoxide dismutase, N-terminal YPN_3708 IPR001189 Manganese/iron superoxide dismutase YPN_3708 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily YPN_3708 IPR019833 Manganese/iron superoxide dismutase, binding site YPN_3709 IPR003660 HAMP domain YPN_3709 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding YPN_3709 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPN_3709 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YPN_3709 IPR004090 Chemotaxis methyl-accepting receptor YPN_3709 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPN_3712 IPR021230 Protein of unknown function DUF2810 YPN_3713 IPR007761 Mannitol repressor MtlR-like YPN_3713 IPR038026 MtlR-like superfamily YPN_3714 IPR000669 Mannitol dehydrogenase YPN_3714 IPR023028 Mannitol-1-phosphate 5-dehydrogenase YPN_3714 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPN_3714 IPR013118 Mannitol dehydrogenase, C-terminal YPN_3714 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPN_3714 IPR023027 Mannitol dehydrogenase, conserved site YPN_3714 IPR036291 NAD(P)-binding domain superfamily YPN_3714 IPR013131 Mannitol dehydrogenase, N-terminal YPN_3715 IPR013014 Phosphotransferase system, EIIC component, type 2 YPN_3715 IPR016152 Phosphotransferase/anion transporter YPN_3715 IPR036095 PTS system IIB component-like superfamily YPN_3715 IPR013011 Phosphotransferase system, EIIB component, type 2 YPN_3715 IPR003352 Phosphotransferase system, EIIC YPN_3715 IPR029503 Phosphotransferase system EIIB component, mannitol-specific YPN_3715 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC YPN_3715 IPR002178 PTS EIIA type-2 domain YPN_3715 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPN_3716 IPR021413 Protein of unknown function DUF3053 YPN_3717 IPR015944 Glycine-tRNA ligase, beta subunit YPN_3717 IPR006194 Glycine-tRNA synthetase, heterodimeric YPN_3717 IPR008909 DALR anticodon binding YPN_3718 IPR006194 Glycine-tRNA synthetase, heterodimeric YPN_3718 IPR002310 Glycine-tRNA ligase, alpha subunit YPN_3719 IPR011257 DNA glycosylase YPN_3719 IPR004597 DNA-3-methyladenine glycosylase I YPN_3719 IPR005019 Methyladenine glycosylase YPN_3721 IPR006665 OmpA-like domain YPN_3721 IPR036737 OmpA-like domain superfamily YPN_3721 IPR006690 Outer membrane protein, OmpA-like, conserved site YPN_3721 IPR006664 Outer membrane protein, bacterial YPN_3721 IPR039567 Glycine zipper domain YPN_3723 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPN_3723 IPR023756 Glyoxylate/hydroxypyruvate reductase B YPN_3723 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPN_3723 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPN_3723 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPN_3723 IPR036291 NAD(P)-binding domain superfamily YPN_3724 IPR014635 Alpha-amylase, MalS type YPN_3724 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPN_3724 IPR017853 Glycoside hydrolase superfamily YPN_3726 IPR015424 Pyridoxal phosphate-dependent transferase YPN_3726 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_3726 IPR004839 Aminotransferase, class I/classII YPN_3727 IPR006512 YidE/YbjL duplication YPN_3727 IPR023018 Transport protein YidE, putative YPN_3727 IPR006037 Regulator of K+ conductance, C-terminal YPN_3727 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily YPN_3728 IPR002068 Alpha crystallin/Hsp20 domain YPN_3728 IPR022848 Small heat shock protein IbpB YPN_3728 IPR008978 HSP20-like chaperone YPN_3728 IPR037913 Small heat shock protein IbpA/IbpB, ACD domain YPN_3729 IPR023728 Small heat shock protein IbpA YPN_3729 IPR008978 HSP20-like chaperone YPN_3729 IPR037913 Small heat shock protein IbpA/IbpB, ACD domain YPN_3729 IPR002068 Alpha crystallin/Hsp20 domain YPN_3730 IPR010780 Protein of unknown function DUF1375 YPN_3731 IPR011659 WD40-like Beta Propeller YPN_3731 IPR011042 Six-bladed beta-propeller, TolB-like YPN_3731 IPR022223 Protein of unknown function DUF3748 YPN_3732 IPR011659 WD40-like Beta Propeller YPN_3732 IPR022223 Protein of unknown function DUF3748 YPN_3732 IPR011042 Six-bladed beta-propeller, TolB-like YPN_3733 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPN_3733 IPR005789 Threonine dehydratase, catabolic YPN_3733 IPR001926 Pyridoxal-phosphate dependent enzyme YPN_3733 IPR002912 ACT domain YPN_3733 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site YPN_3734 IPR003462 Ornithine cyclodeaminase/mu-crystallin YPN_3734 IPR014334 Ectoine utilization protein EutC YPN_3734 IPR036291 NAD(P)-binding domain superfamily YPN_3734 IPR023401 Ornithine cyclodeaminase, N-terminal YPN_3736 IPR025948 HTH-like domain YPN_3736 IPR038965 Transposase InsF-like YPN_3736 IPR001584 Integrase, catalytic core YPN_3736 IPR012337 Ribonuclease H-like superfamily YPN_3736 IPR036397 Ribonuclease H superfamily YPN_3737 IPR029041 FAD-linked oxidoreductase-like YPN_3737 IPR003171 Methylenetetrahydrofolate reductase YPN_3737 IPR004620 5,10-methylenetetrahydrofolate reductase YPN_3738 IPR018042 Aspartate kinase, conserved site YPN_3738 IPR041743 Bifunctional aspartokinase/homoserine dehydrogenase, N-terminal catalytic domain YPN_3738 IPR001048 Aspartate/glutamate/uridylate kinase YPN_3738 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding YPN_3738 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I YPN_3738 IPR036291 NAD(P)-binding domain superfamily YPN_3738 IPR036393 Acetylglutamate kinase-like superfamily YPN_3738 IPR019811 Homoserine dehydrogenase, conserved site YPN_3738 IPR001341 Aspartate kinase YPN_3738 IPR001342 Homoserine dehydrogenase, catalytic YPN_3739 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_3739 IPR015424 Pyridoxal phosphate-dependent transferase YPN_3739 IPR011821 O-succinylhomoserine (thiol)-lyase YPN_3739 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YPN_3739 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_3740 IPR015424 Pyridoxal phosphate-dependent transferase YPN_3740 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YPN_3740 IPR011821 O-succinylhomoserine (thiol)-lyase YPN_3740 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_3740 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_3741 IPR002084 Methionine repressor MetJ YPN_3741 IPR023453 Methionine repressor MetJ domain superfamily YPN_3741 IPR010985 Ribbon-helix-helix YPN_3742 IPR008024 YiaAB two helix YPN_3742 IPR038972 Inner membrane protein YiaA-like YPN_3743 IPR002150 Ribosomal protein L31 YPN_3743 IPR027491 Ribosomal protein L31 type A YPN_3743 IPR042105 Ribosomal protein L31 superfamily YPN_3743 IPR034704 L28p-like YPN_3744 IPR001650 Helicase, C-terminal YPN_3744 IPR042115 Primosomal protein N', 3' DNA-binding domain superfamily YPN_3744 IPR005259 Primosomal protein N' YPN_3744 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPN_3744 IPR041236 Primosomal protein N, C-terminal domain YPN_3744 IPR040498 PriA DNA helicase, Cys-rich region (CRR) domain YPN_3744 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3744 IPR011545 DEAD/DEAH box helicase domain YPN_3744 IPR041222 Primosomal protein N', 3' DNA-binding domain YPN_3745 IPR000843 LacI-type HTH domain YPN_3745 IPR028082 Periplasmic binding protein-like I YPN_3745 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPN_3746 IPR036680 Sporulation-like domain superfamily YPN_3746 IPR011930 Cell division protein FtsN YPN_3746 IPR007730 Sporulation-like domain YPN_3747 IPR022281 ATP-dependent protease, HslV subunit YPN_3747 IPR001353 Proteasome, subunit alpha/beta YPN_3747 IPR023333 Proteasome B-type subunit YPN_3747 IPR029055 Nucleophile aminohydrolases, N-terminal YPN_3748 IPR004491 Heat shock protein HslU YPN_3748 IPR019489 Clp ATPase, C-terminal YPN_3748 IPR003959 ATPase, AAA-type, core YPN_3748 IPR003593 AAA+ ATPase domain YPN_3748 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3749 IPR026046 UbiA prenyltransferase domain containing protein 1 YPN_3749 IPR000537 UbiA prenyltransferase family YPN_3749 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase YPN_3750 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein YPN_3750 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily YPN_3750 IPR010203 Regulator of ribonuclease activity A YPN_3750 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria YPN_3753 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPN_3753 IPR006144 Secretion protein HlyD, conserved site YPN_3754 IPR039421 Type I protein exporter YPN_3754 IPR005074 Peptidase C39, bacteriocin processing YPN_3754 IPR011527 ABC transporter type 1, transmembrane domain YPN_3754 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPN_3754 IPR003439 ABC transporter-like YPN_3754 IPR017871 ABC transporter, conserved site YPN_3754 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3754 IPR003593 AAA+ ATPase domain YPN_3754 IPR033838 Colicin V processing peptidase YPN_3756 IPR009252 Cell division protein ZapB YPN_3757 IPR023271 Aquaporin-like YPN_3757 IPR000425 Major intrinsic protein YPN_3757 IPR022357 Major intrinsic protein, conserved site YPN_3758 IPR018483 Carbohydrate kinase, FGGY, conserved site YPN_3758 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPN_3758 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPN_3758 IPR005999 Glycerol kinase YPN_3758 IPR000577 Carbohydrate kinase, FGGY YPN_3759 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase YPN_3760 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPN_3760 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPN_3760 IPR033892 Ferredoxin--NADP reductase, bacteria YPN_3760 IPR017927 FAD-binding domain, ferredoxin reductase-type YPN_3760 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPN_3760 IPR017938 Riboflavin synthase-like beta-barrel YPN_3761 IPR008523 Protein of unknown function DUF805 YPN_3762 IPR009918 Protein of unknown function DUF1454 YPN_3763 IPR035990 Triosephosphate isomerase superfamily YPN_3763 IPR000652 Triosephosphate isomerase YPN_3763 IPR020861 Triosephosphate isomerase, active site YPN_3763 IPR013785 Aldolase-type TIM barrel YPN_3763 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic YPN_3764 IPR005119 LysR, substrate-binding YPN_3764 IPR036390 Winged helix DNA-binding domain superfamily YPN_3764 IPR000847 Transcription regulator HTH, LysR YPN_3764 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3765 IPR024078 Putative deacetylase LmbE-like domain superfamily YPN_3765 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related YPN_3766 IPR014165 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase YPN_3766 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein YPN_3766 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily YPN_3767 IPR030676 Citrate carrier CitT-related YPN_3767 IPR001898 Solute carrier family 13 YPN_3769 IPR000957 Sulphate/thiosulphate-binding, conserved site YPN_3769 IPR034408 Sulphate/thiosulphate-binding site YPN_3769 IPR005669 Thiosulphate/Sulfate-binding protein YPN_3770 IPR035966 Phosphofructokinase superfamily YPN_3770 IPR000023 Phosphofructokinase domain YPN_3770 IPR015912 Phosphofructokinase, conserved site YPN_3770 IPR022953 ATP-dependent 6-phosphofructokinase YPN_3770 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic YPN_3770 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type YPN_3771 IPR002524 Cation efflux protein YPN_3771 IPR027470 Cation efflux protein, cytoplasmic domain YPN_3771 IPR027469 Cation efflux transmembrane domain superfamily YPN_3771 IPR036837 Cation efflux protein, cytoplasmic domain superfamily YPN_3771 IPR023783 Cation efflux pump FieF YPN_3773 IPR010106 Recombination-promoting nuclease RpnA YPN_3773 IPR006842 Transposase (putative), YhgA-like YPN_3775 IPR004107 Integrase, SAM-like, N-terminal YPN_3775 IPR010998 Integrase/recombinase, N-terminal YPN_3775 IPR002104 Integrase, catalytic domain YPN_3775 IPR011931 Tyrosine recombinase XerC YPN_3775 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPN_3775 IPR023009 Tyrosine recombinase XerC/XerD YPN_3775 IPR013762 Integrase-like, catalytic domain superfamily YPN_3776 IPR012899 LTXXQ motif family protein YPN_3777 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3777 IPR001789 Signal transduction response regulator, receiver domain YPN_3777 IPR001867 OmpR/PhoB-type DNA-binding domain YPN_3777 IPR011006 CheY-like superfamily YPN_3777 IPR039420 Transcriptional regulatory protein WalR-like YPN_3778 IPR032404 Two-component sensor protein CpxA, periplasmic domain YPN_3778 IPR005467 Histidine kinase domain YPN_3778 IPR038515 CpxA, periplasmic domain superfamily YPN_3778 IPR003660 HAMP domain YPN_3778 IPR003594 Histidine kinase/HSP90-like ATPase YPN_3778 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_3778 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPN_3778 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPN_3778 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPN_3779 IPR018060 DNA binding HTH domain, AraC-type YPN_3779 IPR009057 Homeobox-like domain superfamily YPN_3779 IPR016221 Bifunctional regulatory protein Ada YPN_3779 IPR004026 Ada DNA repair, metal-binding YPN_3779 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain YPN_3779 IPR035451 Ada-like domain superfamily YPN_3779 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site YPN_3779 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YPN_3779 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain YPN_3779 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily YPN_3779 IPR018062 HTH domain AraC-type, conserved site YPN_3779 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3780 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPN_3780 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase YPN_3780 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPN_3780 IPR029028 Alpha/beta knot methyltransferases YPN_3781 IPR005881 Serine O-acetyltransferase YPN_3781 IPR001451 Hexapeptide repeat YPN_3781 IPR010493 Serine acetyltransferase, N-terminal YPN_3781 IPR018357 Hexapeptide transferase, conserved site YPN_3781 IPR042122 Serine acetyltransferase, N-terminal domain superfamily YPN_3781 IPR011004 Trimeric LpxA-like superfamily YPN_3782 IPR036291 NAD(P)-binding domain superfamily YPN_3782 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal YPN_3782 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPN_3782 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPN_3782 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal YPN_3782 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent YPN_3783 IPR003708 Bacterial protein export chaperone SecB YPN_3783 IPR035958 SecB-like superfamily YPN_3784 IPR011767 Glutaredoxin active site YPN_3784 IPR002109 Glutaredoxin YPN_3784 IPR014025 Glutaredoxin subgroup YPN_3784 IPR011900 Glutaredoxin, GrxC YPN_3784 IPR036249 Thioredoxin-like superfamily YPN_3785 IPR001763 Rhodanese-like domain YPN_3785 IPR036873 Rhodanese-like domain superfamily YPN_3786 IPR006124 Metalloenzyme YPN_3786 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily YPN_3786 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent YPN_3786 IPR011258 BPG-independent PGAM, N-terminal YPN_3786 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPN_3787 IPR011055 Duplicated hybrid motif YPN_3787 IPR016047 Peptidase M23 YPN_3788 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPN_3788 IPR006837 Divergent polysaccharide deacetylase YPN_3789 IPR006837 Divergent polysaccharide deacetylase YPN_3789 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPN_3790 IPR011032 GroES-like superfamily YPN_3790 IPR036291 NAD(P)-binding domain superfamily YPN_3790 IPR020843 Polyketide synthase, enoylreductase domain YPN_3790 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site YPN_3790 IPR013154 Alcohol dehydrogenase, N-terminal YPN_3790 IPR013149 Alcohol dehydrogenase, C-terminal YPN_3790 IPR004627 L-threonine 3-dehydrogenase YPN_3791 IPR015424 Pyridoxal phosphate-dependent transferase YPN_3791 IPR004839 Aminotransferase, class I/classII YPN_3791 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site YPN_3791 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase YPN_3791 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_3791 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_3792 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase YPN_3792 IPR001509 NAD-dependent epimerase/dehydratase YPN_3792 IPR036291 NAD(P)-binding domain superfamily YPN_3793 IPR011910 ADP-heptose--LPS heptosyltransferase 2 YPN_3793 IPR002201 Glycosyl transferase, family 9 YPN_3794 IPR011908 Lipopolysaccharide heptosyltransferase I YPN_3794 IPR002201 Glycosyl transferase, family 9 YPN_3795 IPR039901 3-deoxy-D-manno-octulosonic acid transferase YPN_3795 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily YPN_3795 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal YPN_3796 IPR029044 Nucleotide-diphospho-sugar transferases YPN_3796 IPR001173 Glycosyltransferase 2-like YPN_3797 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_3797 IPR001980 Phosphopantetheine adenylyltransferase YPN_3797 IPR004821 Cytidyltransferase-like domain YPN_3798 IPR035937 MutM-like, N-terminal YPN_3798 IPR010663 Zinc finger, FPG/IleRS-type YPN_3798 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain YPN_3798 IPR000214 Zinc finger, DNA glycosylase/AP lyase-type YPN_3798 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site YPN_3798 IPR010979 Ribosomal protein S13-like, H2TH YPN_3798 IPR020629 Formamidopyrimidine-DNA glycosylase YPN_3798 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding YPN_3799 IPR011332 Zinc-binding ribosomal protein YPN_3799 IPR018264 Ribosomal protein L33, conserved site YPN_3799 IPR001705 Ribosomal protein L33 YPN_3799 IPR038584 Ribosomal protein L33 superfamily YPN_3800 IPR026569 Ribosomal protein L28/L24 YPN_3800 IPR034704 L28p-like YPN_3800 IPR037147 Ribosomal protein L28/L24 superfamily YPN_3800 IPR001383 Ribosomal protein L28 YPN_3801 IPR010994 RuvA domain 2-like YPN_3801 IPR037518 MPN domain YPN_3801 IPR025657 RadC-like JAB domain YPN_3801 IPR022820 Uncharacterised protein family UPF0758, YicR subfamily YPN_3801 IPR001405 Uncharacterised protein family UPF0758 YPN_3801 IPR020891 Uncharacterised protein family UPF0758, conserved site YPN_3802 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC YPN_3802 IPR035929 CoaB-like superfamily YPN_3802 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal YPN_3802 IPR036551 Flavin prenyltransferase-like YPN_3802 IPR003382 Flavoprotein YPN_3803 IPR036157 dUTPase-like superfamily YPN_3803 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase YPN_3803 IPR033704 dUTPase, trimeric YPN_3803 IPR029054 dUTPase-like YPN_3804 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YPN_3804 IPR009057 Homeobox-like domain superfamily YPN_3804 IPR023769 Nucleoid occlusion factor SlmA YPN_3804 IPR001647 DNA-binding HTH domain, TetR-type YPN_3804 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPN_3805 IPR029057 Phosphoribosyltransferase-like YPN_3805 IPR000836 Phosphoribosyltransferase domain YPN_3805 IPR004467 Orotate phosphoribosyl transferase domain YPN_3805 IPR023031 Orotate phosphoribosyltransferase YPN_3806 IPR027408 PNPase/RNase PH domain superfamily YPN_3806 IPR018336 Ribonuclease PH, conserved site YPN_3806 IPR020568 Ribosomal protein S5 domain 2-type fold YPN_3806 IPR001247 Exoribonuclease, phosphorolytic domain 1 YPN_3806 IPR015847 Exoribonuclease, phosphorolytic domain 2 YPN_3806 IPR002381 Ribonuclease PH, bacterial-type YPN_3806 IPR036345 Exoribonuclease, PH domain 2 superfamily YPN_3807 IPR013527 YicC-like, N-terminal YPN_3807 IPR005229 Conserved hypothetical protein CHP00255 YPN_3807 IPR013551 Domain of unknown function DUF1732 YPN_3808 IPR005115 Uncharacterised domain UPF0126 YPN_3809 IPR010994 RuvA domain 2-like YPN_3809 IPR012340 Nucleic acid-binding, OB-fold YPN_3809 IPR013840 NAD-dependent DNA ligase, N-terminal YPN_3809 IPR004150 NAD-dependent DNA ligase, OB-fold YPN_3809 IPR020923 DNA ligase B YPN_3809 IPR013839 NAD-dependent DNA ligase, adenylation YPN_3810 IPR008145 Guanylate kinase/L-type calcium channel beta subunit YPN_3810 IPR017665 Guanylate kinase YPN_3810 IPR020590 Guanylate kinase, conserved site YPN_3810 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3810 IPR008144 Guanylate kinase-like domain YPN_3811 IPR036161 RPB6/omega subunit-like superfamily YPN_3811 IPR012293 RNA polymerase subunit, RPB6/omega YPN_3811 IPR006110 RNA polymerase, subunit omega/K/RPB6 YPN_3811 IPR003716 DNA-directed RNA polymerase, omega subunit YPN_3812 IPR004095 TGS YPN_3812 IPR007685 RelA/SpoT YPN_3812 IPR002912 ACT domain YPN_3812 IPR012676 TGS-like YPN_3812 IPR033655 RelA, TGS domain YPN_3812 IPR004811 RelA/SpoT family YPN_3812 IPR012675 Beta-grasp domain superfamily YPN_3812 IPR003607 HD/PDEase domain YPN_3813 IPR033671 tRNA (guanosine(18)-2'-O)-methyltransferase YPN_3813 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPN_3813 IPR022724 RNA methyltransferase, SpoU/TrmH type, C-terminal YPN_3813 IPR029028 Alpha/beta knot methyltransferases YPN_3813 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPN_3814 IPR011545 DEAD/DEAH box helicase domain YPN_3814 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPN_3814 IPR001650 Helicase, C-terminal YPN_3814 IPR012340 Nucleic acid-binding, OB-fold YPN_3814 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3814 IPR004609 ATP-dependent DNA helicase RecG YPN_3814 IPR033454 RecG, wedge domain YPN_3815 IPR004445 Sodium/glutamate symport carrier protein GltS YPN_3816 IPR006042 Xanthine/uracil permease YPN_3816 IPR006043 Xanthine/uracil/vitamin C permease YPN_3817 IPR007844 AsmA YPN_3818 IPR016181 Acyl-CoA N-acyltransferase YPN_3818 IPR029069 HotDog domain superfamily YPN_3818 IPR000182 GNAT domain YPN_3818 IPR012660 Thioesterase, putative YPN_3819 IPR012337 Ribonuclease H-like superfamily YPN_3819 IPR017894 HTH domain, IS21 transposase-type YPN_3819 IPR001584 Integrase, catalytic core YPN_3819 IPR006120 Resolvase, HTH domain YPN_3819 IPR036397 Ribonuclease H superfamily YPN_3820 IPR003593 AAA+ ATPase domain YPN_3820 IPR002611 IstB-like ATP-binding protein YPN_3820 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_3820 IPR001270 ClpA/B family YPN_3820 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3821 IPR001451 Hexapeptide repeat YPN_3821 IPR011004 Trimeric LpxA-like superfamily YPN_3822 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal YPN_3822 IPR036291 NAD(P)-binding domain superfamily YPN_3822 IPR022893 Shikimate dehydrogenase family YPN_3822 IPR041121 SDH, C-terminal YPN_3822 IPR011342 Shikimate dehydrogenase YPN_3822 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YPN_3823 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily YPN_3823 IPR023535 Threonylcarbamoyl-AMP synthase YPN_3823 IPR006070 YrdC-like domain YPN_3824 IPR013498 DNA topoisomerase, type IA, zn finger YPN_3824 IPR000380 DNA topoisomerase, type IA YPN_3825 IPR007456 Smg YPN_3826 IPR041614 DprA, winged helix domain YPN_3826 IPR003488 DNA recombination-mediator protein A YPN_3826 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3827 IPR036821 Peptide deformylase superfamily YPN_3827 IPR023635 Peptide deformylase YPN_3828 IPR005793 Formyl transferase, C-terminal YPN_3828 IPR037022 Formyl transferase, C-terminal domain superfamily YPN_3828 IPR002376 Formyl transferase, N-terminal YPN_3828 IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain YPN_3828 IPR036477 Formyl transferase, N-terminal domain superfamily YPN_3828 IPR011034 Formyl transferase-like, C-terminal domain superfamily YPN_3828 IPR001555 Phosphoribosylglycinamide formyltransferase, active site YPN_3828 IPR005794 Methionyl-tRNA formyltransferase YPN_3829 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type YPN_3829 IPR035926 NusB-like superfamily YPN_3829 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site YPN_3829 IPR023267 RNA (C5-cytosine) methyltransferase YPN_3829 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_3829 IPR006027 NusB/RsmB/TIM44 YPN_3829 IPR023541 rRNA small subunit methyltransferase B, enterobacteriaceae YPN_3829 IPR004573 rRNA small subunit methyltransferase B YPN_3830 IPR003148 Regulator of K+ conductance, N-terminal YPN_3830 IPR006036 Potassium uptake protein TrkA YPN_3830 IPR036291 NAD(P)-binding domain superfamily YPN_3830 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily YPN_3830 IPR006037 Regulator of K+ conductance, C-terminal YPN_3831 IPR036019 Gated mechanosensitive channel YPN_3831 IPR019823 Large-conductance mechanosensitive channel, conserved site YPN_3831 IPR001185 Large-conductance mechanosensitive channel YPN_3831 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L YPN_3832 IPR005589 Alternative ribosome-rescue factor A YPN_3833 IPR000551 MerR-type HTH domain YPN_3833 IPR011788 Zn(II)-responsive transcriptional regulator YPN_3833 IPR009061 Putative DNA-binding domain superfamily YPN_3834 IPR036373 Ribosomal protein L17 superfamily YPN_3834 IPR000456 Ribosomal protein L17 YPN_3835 IPR036643 DNA-directed RNA polymerase, insert domain superfamily YPN_3835 IPR036603 RNA polymerase, RBP11-like subunit YPN_3835 IPR011773 DNA-directed RNA polymerase, alpha subunit YPN_3835 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type YPN_3835 IPR011262 DNA-directed RNA polymerase, insert domain YPN_3835 IPR011260 RNA polymerase, alpha subunit, C-terminal YPN_3836 IPR005709 Ribosomal protein S4, bacterial-type YPN_3836 IPR022801 Ribosomal protein S4/S9 YPN_3836 IPR036986 RNA-binding S4 domain superfamily YPN_3836 IPR002942 RNA-binding S4 domain YPN_3836 IPR018079 Ribosomal protein S4, conserved site YPN_3836 IPR001912 Ribosomal protein S4/S9, N-terminal YPN_3837 IPR019981 Ribosomal protein S11, bacterial-type YPN_3837 IPR036967 Ribosomal protein S11 superfamily YPN_3837 IPR018102 Ribosomal S11, conserved site YPN_3837 IPR001971 Ribosomal protein S11 YPN_3838 IPR010979 Ribosomal protein S13-like, H2TH YPN_3838 IPR019980 Ribosomal protein S13, bacterial-type YPN_3838 IPR018269 Ribosomal protein S13, conserved site YPN_3838 IPR027437 30s ribosomal protein S13, C-terminal YPN_3838 IPR001892 Ribosomal protein S13 YPN_3839 IPR002208 SecY/SEC61-alpha family YPN_3839 IPR030659 SecY conserved site YPN_3839 IPR026593 Protein translocase subunit SecY YPN_3839 IPR023201 SecY domain superfamily YPN_3840 IPR021131 Ribosomal protein L18e/L15P YPN_3840 IPR001196 Ribosomal protein L15, conserved site YPN_3840 IPR005749 Ribosomal protein L15, bacterial-type YPN_3840 IPR030878 Ribosomal protein L15 YPN_3840 IPR036227 Ribosomal L18e/L15P superfamily YPN_3841 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily YPN_3841 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain YPN_3841 IPR018038 Ribosomal protein L30, conserved site YPN_3841 IPR005996 Ribosomal protein L30, bacterial-type YPN_3842 IPR020568 Ribosomal protein S5 domain 2-type fold YPN_3842 IPR005324 Ribosomal protein S5, C-terminal YPN_3842 IPR000851 Ribosomal protein S5 YPN_3842 IPR005712 Ribosomal protein S5, bacterial-type YPN_3842 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPN_3842 IPR013810 Ribosomal protein S5, N-terminal YPN_3842 IPR018192 Ribosomal protein S5, N-terminal, conserved site YPN_3843 IPR005484 Ribosomal protein L18 YPN_3843 IPR004389 Ribosomal protein L18, bacterial-type YPN_3844 IPR020040 Ribosomal protein L6, alpha-beta domain YPN_3844 IPR000702 Ribosomal protein L6 YPN_3844 IPR002358 Ribosomal protein L6, conserved site YPN_3844 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily YPN_3844 IPR019906 Ribosomal protein L6, bacterial-type YPN_3845 IPR035987 Ribosomal protein S8 superfamily YPN_3845 IPR000630 Ribosomal protein S8 YPN_3846 IPR001209 Ribosomal protein S14 YPN_3846 IPR023036 Ribosomal protein S14, bacterial/plastid YPN_3846 IPR018271 Ribosomal protein S14, conserved site YPN_3847 IPR031310 Ribosomal protein L5, N-terminal YPN_3847 IPR031309 Ribosomal protein L5, C-terminal YPN_3847 IPR020930 Ribosomal protein L5, bacterial-type YPN_3847 IPR002132 Ribosomal protein L5 YPN_3847 IPR022803 Ribosomal protein L5 domain superfamily YPN_3848 IPR041988 Ribosomal Protein L26/L24, KOW domain YPN_3848 IPR014722 Ribosomal protein L2, domain 2 YPN_3848 IPR003256 Ribosomal protein L24 YPN_3848 IPR005825 Ribosomal protein L24/L26, conserved site YPN_3848 IPR008991 Translation protein SH3-like domain superfamily YPN_3848 IPR005824 KOW YPN_3849 IPR000218 Ribosomal protein L14P YPN_3849 IPR005745 Ribosomal protein L14P, bacterial-type YPN_3849 IPR019972 Ribosomal protein L14P, conserved site YPN_3849 IPR036853 Ribosomal protein L14 superfamily YPN_3850 IPR019979 Ribosomal protein S17, conserved site YPN_3850 IPR000266 Ribosomal protein S17/S11 YPN_3850 IPR019984 30S ribosomal protein S17 YPN_3850 IPR012340 Nucleic acid-binding, OB-fold YPN_3851 IPR018254 Ribosomal protein L29, conserved site YPN_3851 IPR036049 Ribosomal protein L29/L35 superfamily YPN_3851 IPR001854 Ribosomal protein L29/L35 YPN_3852 IPR020798 Ribosomal protein L16, conserved site YPN_3852 IPR000114 Ribosomal protein L16 YPN_3852 IPR036920 Ribosomal protein L10e/L16 superfamily YPN_3852 IPR016180 Ribosomal protein L10e/L16 YPN_3853 IPR018280 Ribosomal protein S3, conserved site YPN_3853 IPR001351 Ribosomal protein S3, C-terminal YPN_3853 IPR005704 Ribosomal protein S3, bacterial-type YPN_3853 IPR009019 K homology domain superfamily, prokaryotic type YPN_3853 IPR036419 Ribosomal protein S3, C-terminal domain superfamily YPN_3853 IPR004087 K Homology domain YPN_3853 IPR004044 K Homology domain, type 2 YPN_3853 IPR015946 K homology domain-like, alpha/beta YPN_3854 IPR001063 Ribosomal protein L22/L17 YPN_3854 IPR018260 Ribosomal protein L22/L17, conserved site YPN_3854 IPR036394 Ribosomal protein L22/L17 superfamily YPN_3854 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type YPN_3855 IPR002222 Ribosomal protein S19/S15 YPN_3855 IPR020934 Ribosomal protein S19 conserved site YPN_3855 IPR023575 Ribosomal protein S19, superfamily YPN_3855 IPR005732 Ribosomal protein S19, bacterial-type YPN_3856 IPR022671 Ribosomal protein L2, conserved site YPN_3856 IPR014726 Ribosomal protein L2, domain 3 YPN_3856 IPR008991 Translation protein SH3-like domain superfamily YPN_3856 IPR005880 Ribosomal protein L2, bacterial/organellar-type YPN_3856 IPR022669 Ribosomal protein L2, C-terminal YPN_3856 IPR002171 Ribosomal protein L2 YPN_3856 IPR014722 Ribosomal protein L2, domain 2 YPN_3856 IPR022666 Ribosomal Proteins L2, RNA binding domain YPN_3856 IPR012340 Nucleic acid-binding, OB-fold YPN_3857 IPR013025 Ribosomal protein L25/L23 YPN_3857 IPR001014 Ribosomal protein L23/L25, conserved site YPN_3857 IPR012678 Ribosomal protein L23/L15e core domain superfamily YPN_3857 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily YPN_3858 IPR023574 Ribosomal protein L4 domain superfamily YPN_3858 IPR013005 50S ribosomal protein uL4 YPN_3858 IPR002136 Ribosomal protein L4/L1e YPN_3859 IPR009000 Translation protein, beta-barrel domain superfamily YPN_3859 IPR000597 Ribosomal protein L3 YPN_3859 IPR019926 Ribosomal protein L3, conserved site YPN_3859 IPR019927 Ribosomal protein L3, bacterial/organelle-type YPN_3860 IPR018268 Ribosomal protein S10, conserved site YPN_3860 IPR001848 Ribosomal protein S10 YPN_3860 IPR036838 Ribosomal protein S10 domain superfamily YPN_3860 IPR027486 Ribosomal protein S10 domain YPN_3861 IPR009040 Ferritin-like diiron domain YPN_3861 IPR009078 Ferritin-like superfamily YPN_3861 IPR008331 Ferritin/DPS protein domain YPN_3861 IPR002024 Bacterioferritin YPN_3861 IPR012347 Ferritin-like YPN_3862 IPR007419 BFD-like [2Fe-2S]-binding domain YPN_3862 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily YPN_3863 IPR002686 Transposase IS200-like YPN_3863 IPR036515 Transposase IS200-like superfamily YPN_3864 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal YPN_3864 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle YPN_3864 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPN_3864 IPR009000 Translation protein, beta-barrel domain superfamily YPN_3864 IPR000795 Transcription factor, GTP-binding domain YPN_3864 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain YPN_3864 IPR004161 Translation elongation factor EFTu-like, domain 2 YPN_3864 IPR033720 Elongation factor Tu, domain 2 YPN_3864 IPR005225 Small GTP-binding protein domain YPN_3864 IPR031157 Tr-type G domain, conserved site YPN_3864 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3865 IPR020568 Ribosomal protein S5 domain 2-type fold YPN_3865 IPR000640 Elongation factor EFG, domain V-like YPN_3865 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3865 IPR041095 Elongation Factor G, domain II YPN_3865 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPN_3865 IPR009022 Elongation factor G, domain III YPN_3865 IPR005225 Small GTP-binding protein domain YPN_3865 IPR000795 Transcription factor, GTP-binding domain YPN_3865 IPR009000 Translation protein, beta-barrel domain superfamily YPN_3865 IPR004540 Translation elongation factor EFG/EF2 YPN_3865 IPR005517 Translation elongation factor EFG/EF2, domain IV YPN_3865 IPR035647 EF-G domain III/V-like YPN_3865 IPR035649 EFG, domain V YPN_3865 IPR004161 Translation elongation factor EFTu-like, domain 2 YPN_3865 IPR031157 Tr-type G domain, conserved site YPN_3866 IPR023798 Ribosomal protein S7 domain YPN_3866 IPR000235 Ribosomal protein S5/S7 YPN_3866 IPR036823 Ribosomal protein S7 domain superfamily YPN_3866 IPR005717 Ribosomal protein S7, bacterial/organellar-type YPN_3866 IPR020606 Ribosomal protein S7, conserved site YPN_3867 IPR012340 Nucleic acid-binding, OB-fold YPN_3867 IPR005679 Ribosomal protein S12, bacterial-type YPN_3867 IPR006032 Ribosomal protein S12/S23 YPN_3868 IPR027396 DsrEFH-like YPN_3868 IPR007215 Sulphur relay, TusB/DsrH YPN_3868 IPR023526 Sulphur relay, TusB YPN_3869 IPR037450 Sulphur relay, TusC YPN_3869 IPR017462 Sulphur relay, TusC/DsrF YPN_3869 IPR003787 Sulphur relay, DsrE/F-like protein YPN_3869 IPR027396 DsrEFH-like YPN_3870 IPR027396 DsrEFH-like YPN_3870 IPR003787 Sulphur relay, DsrE/F-like protein YPN_3870 IPR017463 Sulphur relay, TusD/DsrE YPN_3871 IPR039446 Transcriptional regulator DauR-like YPN_3871 IPR013559 YheO-like YPN_3871 IPR039445 Transcriptional regulator DauR-like, HTH domain YPN_3872 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily YPN_3872 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal YPN_3872 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YPN_3873 IPR007236 SlyX YPN_3874 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YPN_3875 IPR012658 Conserved hypothetical protein CHP02443 YPN_3876 IPR036291 NAD(P)-binding domain superfamily YPN_3876 IPR006153 Cation/H+ exchanger YPN_3876 IPR003148 Regulator of K+ conductance, N-terminal YPN_3876 IPR038770 Sodium/solute symporter superfamily YPN_3876 IPR020884 Glutathione-regulated potassium-efflux system protein KefB YPN_3876 IPR004771 K+/H+ exchanger YPN_3877 IPR029039 Flavoprotein-like superfamily YPN_3877 IPR003680 Flavodoxin-like fold YPN_3877 IPR023947 Glutathione-regulated potassium-efflux system ancillary protein KefG YPN_3878 IPR003439 ABC transporter-like YPN_3878 IPR032781 ABC-transporter extension domain YPN_3878 IPR003593 AAA+ ATPase domain YPN_3878 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3878 IPR017871 ABC transporter, conserved site YPN_3879 IPR017871 ABC transporter, conserved site YPN_3879 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3879 IPR003439 ABC transporter-like YPN_3879 IPR032781 ABC-transporter extension domain YPN_3879 IPR003593 AAA+ ATPase domain YPN_3880 IPR001173 Glycosyltransferase 2-like YPN_3880 IPR029044 Nucleotide-diphospho-sugar transferases YPN_3882 IPR042098 Taurine dioxygenase TauD-like superfamily YPN_3882 IPR003819 TauD/TfdA-like domain YPN_3883 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_3883 IPR035906 MetI-like superfamily YPN_3884 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3884 IPR015859 ABC transporter, taurine import, TauD YPN_3884 IPR017871 ABC transporter, conserved site YPN_3884 IPR003593 AAA+ ATPase domain YPN_3884 IPR003439 ABC transporter-like YPN_3885 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPN_3885 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain YPN_3885 IPR010068 Taurine ABC transporter, substrate-binding protein TauA YPN_3886 IPR001123 Amino acid exporter protein, LeuE-type YPN_3887 IPR012020 AB hydrolase 4 family YPN_3887 IPR000952 AB hydrolase 4, conserved site YPN_3887 IPR000073 Alpha/beta hydrolase fold-1 YPN_3887 IPR029058 Alpha/Beta hydrolase fold YPN_3888 IPR036685 YehU-like superfamily YPN_3888 IPR010648 Uncharacterised protein family UPF0270 YPN_3889 IPR006083 Phosphoribulokinase/uridine kinase YPN_3889 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3889 IPR006082 Phosphoribulokinase YPN_3891 IPR003718 OsmC/Ohr family YPN_3891 IPR015946 K homology domain-like, alpha/beta YPN_3891 IPR036102 OsmC/Ohr superfamily YPN_3892 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3892 IPR014710 RmlC-like jelly roll fold YPN_3892 IPR036390 Winged helix DNA-binding domain superfamily YPN_3892 IPR018335 Transcription regulator HTH, Crp-type, conserved site YPN_3892 IPR018490 Cyclic nucleotide-binding-like YPN_3892 IPR018488 Cyclic nucleotide-binding, conserved site YPN_3892 IPR000595 Cyclic nucleotide-binding domain YPN_3892 IPR012318 Crp-type HTH domain YPN_3893 IPR010020 Integral membrane protein, YccS/YhfK YPN_3893 IPR032692 Integral membrane protein YccS, N-terminal YPN_3894 IPR005814 Aminotransferase class-III YPN_3894 IPR015424 Pyridoxal phosphate-dependent transferase YPN_3894 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPN_3894 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPN_3894 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria YPN_3894 IPR004636 Acetylornithine/Succinylornithine transaminase family YPN_3895 IPR029062 Class I glutamine amidotransferase-like YPN_3895 IPR017926 Glutamine amidotransferase YPN_3895 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain YPN_3896 IPR033186 Helicase HerA-like C-terminal YPN_3896 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3897 IPR029000 Cyclophilin-like domain superfamily YPN_3897 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain YPN_3897 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site YPN_3898 IPR036291 NAD(P)-binding domain superfamily YPN_3898 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal YPN_3898 IPR022616 Glycosyl hydrolase, family 4, C-terminal YPN_3898 IPR001088 Glycoside hydrolase, family 4 YPN_3898 IPR019802 Glycoside hydrolase, family 4, conserved site YPN_3899 IPR028082 Periplasmic binding protein-like I YPN_3899 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPN_3899 IPR000843 LacI-type HTH domain YPN_3901 IPR023528 Major facilitator superfamily transporter, TsgA YPN_3901 IPR036259 MFS transporter superfamily YPN_3901 IPR011701 Major facilitator superfamily YPN_3901 IPR020846 Major facilitator superfamily domain YPN_3902 IPR013108 Amidohydrolase 3 YPN_3902 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPN_3902 IPR032466 Metal-dependent hydrolase YPN_3903 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily YPN_3903 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_3903 IPR023753 FAD/NAD(P)-binding domain YPN_3903 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily YPN_3903 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB YPN_3903 IPR017121 Nitrite reductase [NAD(P)H], large subunit YPN_3903 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain YPN_3903 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site YPN_3903 IPR007419 BFD-like [2Fe-2S]-binding domain YPN_3903 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain YPN_3903 IPR041575 NADH-rubredoxin oxidoreductase, C-terminal YPN_3904 IPR017881 Nitrite reductase (NADH) small subunit YPN_3904 IPR012748 Rieske-like [2Fe-2S] domain, NirD-type YPN_3904 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily YPN_3906 IPR000292 Formate/nitrite transporter YPN_3906 IPR023271 Aquaporin-like YPN_3906 IPR024002 Formate/nitrite transporter, conserved site YPN_3907 IPR028281 Siroheme synthase, central domain YPN_3907 IPR019478 Sirohaem synthase, dimerisation domain YPN_3907 IPR006367 Sirohaem synthase, N-terminal YPN_3907 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site YPN_3907 IPR037115 Sirohaem synthase, dimerisation domain superfamily YPN_3907 IPR035996 Tetrapyrrole methylase superfamily YPN_3907 IPR014777 Tetrapyrrole methylase, subdomain 1 YPN_3907 IPR000878 Tetrapyrrole methylase YPN_3907 IPR014776 Tetrapyrrole methylase, subdomain 2 YPN_3907 IPR006366 Uroporphyrin-III C-methyltransferase YPN_3907 IPR012409 Sirohaem synthase YPN_3907 IPR036291 NAD(P)-binding domain superfamily YPN_3908 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPN_3908 IPR002306 Tryptophan-tRNA ligase YPN_3908 IPR024109 Tryptophan-tRNA ligase, bacterial-type YPN_3908 IPR002305 Aminoacyl-tRNA synthetase, class Ic YPN_3908 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPN_3909 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic YPN_3909 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPN_3909 IPR023214 HAD superfamily YPN_3909 IPR041492 Haloacid dehalogenase-like hydrolase YPN_3909 IPR036412 HAD-like superfamily YPN_3909 IPR006439 HAD hydrolase, subfamily IA YPN_3909 IPR037512 Phosphoglycolate phosphatase, prokaryotic YPN_3910 IPR000056 Ribulose-phosphate 3-epimerase-like YPN_3910 IPR011060 Ribulose-phosphate binding barrel YPN_3910 IPR026019 Ribulose-phosphate 3-epimerase YPN_3910 IPR013785 Aldolase-type TIM barrel YPN_3911 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_3911 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPN_3911 IPR023095 Adenine-specific methyltransferase, domain 2 YPN_3911 IPR012327 D12 class N6 adenine-specific DNA methyltransferase YPN_3911 IPR012263 Adenine modification methylase, M.EcoRV-type YPN_3912 IPR036680 Sporulation-like domain superfamily YPN_3912 IPR007730 Sporulation-like domain YPN_3913 IPR016037 3-dehydroquinate synthase AroB YPN_3913 IPR030960 3-dehydroquinate synthase domain YPN_3913 IPR030963 3-dehydroquinate synthase family YPN_3914 IPR031322 Shikimate kinase/gluconokinase YPN_3914 IPR000623 Shikimate kinase/Threonine synthase-like 1 YPN_3914 IPR023000 Shikimate kinase, conserved site YPN_3914 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3915 IPR013355 Type IV pilus secretin PilQ YPN_3915 IPR004845 Type II secretion system GspD, conserved site YPN_3915 IPR004846 Type II/III secretion system YPN_3915 IPR011662 Secretin/TonB, short N-terminal domain YPN_3915 IPR001775 GspD/PilQ family YPN_3915 IPR005644 NolW-like YPN_3915 IPR038591 NolW-like superfamily YPN_3921 IPR012338 Beta-lactamase/transpeptidase-like YPN_3921 IPR001264 Glycosyl transferase, family 51 YPN_3921 IPR036950 Penicillin binding protein transglycosylase domain YPN_3921 IPR031376 Penicillin-binding protein, OB-like domain YPN_3921 IPR001460 Penicillin-binding protein, transpeptidase YPN_3921 IPR023346 Lysozyme-like domain superfamily YPN_3922 IPR015797 NUDIX hydrolase-like domain superfamily YPN_3922 IPR020084 NUDIX hydrolase, conserved site YPN_3922 IPR000086 NUDIX hydrolase domain YPN_3923 IPR010771 Intracellular growth attenuator IgaA YPN_3924 IPR036412 HAD-like superfamily YPN_3924 IPR041492 Haloacid dehalogenase-like hydrolase YPN_3924 IPR023214 HAD superfamily YPN_3924 IPR006439 HAD hydrolase, subfamily IA YPN_3925 IPR025708 Heat shock protein 15 YPN_3925 IPR002942 RNA-binding S4 domain YPN_3925 IPR036986 RNA-binding S4 domain superfamily YPN_3926 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily YPN_3926 IPR016153 Heat shock protein Hsp33, N-terminal YPN_3926 IPR016154 Heat shock protein Hsp33, C-terminal YPN_3926 IPR000397 Heat shock protein Hsp33 YPN_3927 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site YPN_3927 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising YPN_3927 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal YPN_3927 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal YPN_3928 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPN_3928 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPN_3928 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPN_3928 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_3928 IPR005467 Histidine kinase domain YPN_3928 IPR003660 HAMP domain YPN_3928 IPR003594 Histidine kinase/HSP90-like ATPase YPN_3929 IPR039420 Transcriptional regulatory protein WalR-like YPN_3929 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3929 IPR001867 OmpR/PhoB-type DNA-binding domain YPN_3929 IPR001789 Signal transduction response regulator, receiver domain YPN_3929 IPR016032 Signal transduction response regulator, C-terminal effector YPN_3929 IPR011006 CheY-like superfamily YPN_3930 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal YPN_3930 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal YPN_3930 IPR006358 Transcription elongation factor GreB YPN_3930 IPR028624 Transcription elongation factor GreA/GreB YPN_3930 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily YPN_3930 IPR018151 Transcription elongation factor, GreA/GreB, conserved site YPN_3930 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily YPN_3930 IPR023459 Transcription elongation factor GreA/GreB family YPN_3931 IPR003029 S1 domain YPN_3931 IPR023323 Tex-like domain superfamily YPN_3931 IPR023319 Tex-like protein, HTH domain superfamily YPN_3931 IPR012340 Nucleic acid-binding, OB-fold YPN_3931 IPR037027 YqgF/RNase H-like domain superfamily YPN_3931 IPR022967 RNA-binding domain, S1 YPN_3931 IPR012337 Ribonuclease H-like superfamily YPN_3931 IPR018974 Tex-like protein, N-terminal YPN_3931 IPR041692 HHH domain 9 YPN_3931 IPR010994 RuvA domain 2-like YPN_3931 IPR006641 YqgF/RNase H-like domain YPN_3931 IPR032639 Tex protein, YqgF-like domain YPN_3932 IPR007167 Ferrous iron transporter FeoA domain YPN_3932 IPR038157 Ferrous iron transporter, core domain YPN_3932 IPR008988 Transcriptional repressor, C-terminal YPN_3933 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain YPN_3933 IPR030389 FeoB-type guanine nucleotide-binding (G) domain YPN_3933 IPR003373 Ferrous iron transport protein B YPN_3933 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3933 IPR041069 FeoB, cytosolic helical domain YPN_3933 IPR005225 Small GTP-binding protein domain YPN_3933 IPR011640 Ferrous iron transport protein B, C-terminal YPN_3934 IPR036390 Winged helix DNA-binding domain superfamily YPN_3934 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3934 IPR015102 Transcriptional regulator HTH-type, FeoC YPN_3934 IPR023732 Probable [Fe-S]-dependent transcriptional repressor YPN_3935 IPR036275 YdgH-like superfamily YPN_3935 IPR010854 Domain of unknown function DUF1471 YPN_3935 IPR025543 Dodecin-like YPN_3936 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase YPN_3936 IPR029058 Alpha/Beta hydrolase fold YPN_3936 IPR000073 Alpha/beta hydrolase fold-1 YPN_3937 IPR005222 Competence protein ComF YPN_3937 IPR000836 Phosphoribosyltransferase domain YPN_3937 IPR029057 Phosphoribosyltransferase-like YPN_3938 IPR035903 HesB-like domain superfamily YPN_3938 IPR000361 FeS cluster biogenesis YPN_3938 IPR034904 Fe-S cluster assembly domain superfamily YPN_3938 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal YPN_3938 IPR017726 Fe/S biogenesis protein NfuA YPN_3939 IPR003385 Glycoside hydrolase, family 77 YPN_3939 IPR017853 Glycoside hydrolase superfamily YPN_3940 IPR011833 Glycogen/starch/alpha-glucan phosphorylase YPN_3940 IPR035090 Phosphorylase pyridoxal-phosphate attachment site YPN_3940 IPR000811 Glycosyl transferase, family 35 YPN_3941 IPR011833 Glycogen/starch/alpha-glucan phosphorylase YPN_3941 IPR035090 Phosphorylase pyridoxal-phosphate attachment site YPN_3941 IPR000811 Glycosyl transferase, family 35 YPN_3942 IPR023768 Transcriptional regulator HTH-type, MalT YPN_3942 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3942 IPR000792 Transcription regulator LuxR, C-terminal YPN_3942 IPR016032 Signal transduction response regulator, C-terminal effector YPN_3942 IPR011990 Tetratricopeptide-like helical domain superfamily YPN_3942 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3942 IPR041617 MalT-like TPR region YPN_3943 IPR003593 AAA+ ATPase domain YPN_3943 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_3943 IPR002611 IstB-like ATP-binding protein YPN_3943 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3943 IPR001270 ClpA/B family YPN_3944 IPR017894 HTH domain, IS21 transposase-type YPN_3944 IPR012337 Ribonuclease H-like superfamily YPN_3944 IPR036397 Ribonuclease H superfamily YPN_3944 IPR001584 Integrase, catalytic core YPN_3944 IPR006120 Resolvase, HTH domain YPN_3945 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3945 IPR041617 MalT-like TPR region YPN_3945 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3945 IPR016032 Signal transduction response regulator, C-terminal effector YPN_3945 IPR011990 Tetratricopeptide-like helical domain superfamily YPN_3945 IPR000792 Transcription regulator LuxR, C-terminal YPN_3945 IPR023768 Transcriptional regulator HTH-type, MalT YPN_3946 IPR036873 Rhodanese-like domain superfamily YPN_3946 IPR001763 Rhodanese-like domain YPN_3946 IPR023695 Thiosulfate sulfurtransferase, bacterial YPN_3947 IPR038236 GlpG peptidase, N-terminal domain superfamily YPN_3947 IPR035952 Rhomboid-like superfamily YPN_3947 IPR022764 Peptidase S54, rhomboid domain YPN_3947 IPR022732 Peptidase S54, GlpG peptidase, N-terminal YPN_3947 IPR023662 Rhomboid protease GlpG YPN_3948 IPR001034 DeoR-type HTH domain YPN_3948 IPR037171 NagB/RpiA transferase-like YPN_3948 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPN_3948 IPR036388 Winged helix-like DNA-binding domain superfamily YPN_3948 IPR036390 Winged helix DNA-binding domain superfamily YPN_3948 IPR014036 DeoR C-terminal sensor domain YPN_3950 IPR025948 HTH-like domain YPN_3950 IPR038965 Transposase InsF-like YPN_3950 IPR001584 Integrase, catalytic core YPN_3950 IPR012337 Ribonuclease H-like superfamily YPN_3950 IPR036397 Ribonuclease H superfamily YPN_3951 IPR000150 Cof family YPN_3951 IPR036412 HAD-like superfamily YPN_3951 IPR006379 HAD-superfamily hydrolase, subfamily IIB YPN_3951 IPR023214 HAD superfamily YPN_3952 IPR018522 DNA topoisomerase, type IIA, conserved site YPN_3952 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 YPN_3952 IPR006171 TOPRIM domain YPN_3952 IPR034160 DNA gyrase subunit B, TOPRIM domain YPN_3952 IPR013760 DNA topoisomerase, type IIA-like domain superfamily YPN_3952 IPR001241 DNA topoisomerase, type IIA YPN_3952 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPN_3952 IPR020568 Ribosomal protein S5 domain 2-type fold YPN_3952 IPR041423 DNA gyrase subunit B insert domain YPN_3952 IPR003594 Histidine kinase/HSP90-like ATPase YPN_3952 IPR011557 DNA gyrase, subunit B YPN_3952 IPR002288 DNA gyrase B subunit, C-terminal YPN_3952 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPN_3952 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal YPN_3953 IPR018078 DNA-binding, RecF, conserved site YPN_3953 IPR001238 DNA-binding, RecF YPN_3953 IPR003395 RecF/RecN/SMC, N-terminal YPN_3953 IPR042174 DNA-binding RecF, domain 2 YPN_3953 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3954 IPR001001 DNA polymerase III, beta sliding clamp YPN_3954 IPR022637 DNA polymerase III, beta sliding clamp, central YPN_3954 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal YPN_3954 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal YPN_3955 IPR003593 AAA+ ATPase domain YPN_3955 IPR001957 Chromosomal replication control, initiator DnaA YPN_3955 IPR020591 Chromosomal replication control, initiator DnaA-like YPN_3955 IPR018312 Chromosomal replication control, initiator DnaA, conserved site YPN_3955 IPR013317 Chromosomal replication initiator protein DnaA YPN_3955 IPR013159 Chromosomal replication initiator, DnaA C-terminal YPN_3955 IPR024633 DnaA N-terminal domain YPN_3955 IPR038454 DnaA, N-terminal domain superfamily YPN_3955 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3955 IPR010921 Trp repressor/replication initiator YPN_3956 IPR020939 Ribosomal protein L34, conserved site YPN_3956 IPR000271 Ribosomal protein L34 YPN_3957 IPR000100 Ribonuclease P YPN_3957 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPN_3957 IPR020539 Ribonuclease P, conserved site YPN_3957 IPR020568 Ribosomal protein S5 domain 2-type fold YPN_3958 IPR002696 Putative membrane protein insertion efficiency factor YPN_3959 IPR038221 YidC, periplasmic domain superfamily YPN_3959 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 YPN_3959 IPR028053 Membrane insertase YidC, N-terminal YPN_3959 IPR028055 Membrane insertase YidC/Oxa1, C-terminal YPN_3959 IPR019998 Membrane insertase YidC YPN_3959 IPR038210 Membrane insertase YidC, periplasmic domain YPN_3960 IPR005225 Small GTP-binding protein domain YPN_3960 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 YPN_3960 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3960 IPR025867 MnmE, helical domain YPN_3960 IPR027368 tRNA modification GTPase MnmE domain 2 YPN_3960 IPR018948 GTP-binding protein TrmE, N-terminal YPN_3960 IPR004520 tRNA modification GTPase MnmE YPN_3960 IPR031168 TrmE-type guanine nucleotide-binding domain YPN_3960 IPR006073 GTP binding domain YPN_3961 IPR010758 Trans-2-enoyl-CoA reductase YPN_3961 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative YPN_3961 IPR024906 Enoyl reductase FAD binding domain YPN_3964 IPR026033 Azaguanine-like transporters YPN_3964 IPR006043 Xanthine/uracil/vitamin C permease YPN_3965 IPR036412 HAD-like superfamily YPN_3965 IPR006439 HAD hydrolase, subfamily IA YPN_3965 IPR023214 HAD superfamily YPN_3965 IPR041492 Haloacid dehalogenase-like hydrolase YPN_3965 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPN_3966 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPN_3966 IPR035906 MetI-like superfamily YPN_3966 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_3967 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_3967 IPR035906 MetI-like superfamily YPN_3967 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPN_3968 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPN_3968 IPR001320 Ionotropic glutamate receptor YPN_3968 IPR018313 Solute-binding protein family 3, conserved site YPN_3968 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YPN_3970 IPR028366 Phosphate transport system protein PhoU YPN_3970 IPR026022 PhoU domain YPN_3970 IPR038078 PhoU-like domain superfamily YPN_3971 IPR003439 ABC transporter-like YPN_3971 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3971 IPR017871 ABC transporter, conserved site YPN_3971 IPR015850 ABC transporter, phosphate import, PstB YPN_3971 IPR003593 AAA+ ATPase domain YPN_3971 IPR005670 Phosphate transport system permease protein 1 YPN_3972 IPR005672 Phosphate transport system permease protein PstA YPN_3972 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_3972 IPR035906 MetI-like superfamily YPN_3973 IPR035906 MetI-like superfamily YPN_3973 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPN_3973 IPR011864 Phosphate ABC transporter, permease protein PstC YPN_3974 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS YPN_3974 IPR024370 PBP domain YPN_3975 IPR035466 GlmS/AgaS, SIS domain 1 YPN_3975 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising YPN_3975 IPR029055 Nucleophile aminohydrolases, N-terminal YPN_3975 IPR001347 Sugar isomerase (SIS) YPN_3975 IPR017932 Glutamine amidotransferase type 2 domain YPN_3975 IPR035490 GlmS/FrlB, SIS domain 2 YPN_3976 IPR025877 MobA-like NTP transferase YPN_3976 IPR029044 Nucleotide-diphospho-sugar transferases YPN_3976 IPR001451 Hexapeptide repeat YPN_3976 IPR038009 GlmU, C-terminal LbH domain YPN_3976 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase YPN_3976 IPR018357 Hexapeptide transferase, conserved site YPN_3976 IPR011004 Trimeric LpxA-like superfamily YPN_3977 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal YPN_3977 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain YPN_3977 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit YPN_3977 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily YPN_3977 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal YPN_3978 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPN_3978 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily YPN_3978 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPN_3978 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain YPN_3978 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3978 IPR005722 ATP synthase, F1 complex, beta subunit YPN_3978 IPR003593 AAA+ ATPase domain YPN_3978 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal YPN_3979 IPR000131 ATP synthase, F1 complex, gamma subunit YPN_3979 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site YPN_3979 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily YPN_3980 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily YPN_3980 IPR000793 ATP synthase, alpha subunit, C-terminal YPN_3980 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain YPN_3980 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPN_3980 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily YPN_3980 IPR033732 ATP synthase, F1 complex, alpha subunit nucleotide-binding domain YPN_3980 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPN_3980 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_3980 IPR005294 ATP synthase, F1 complex, alpha subunit YPN_3980 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily YPN_3981 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily YPN_3981 IPR020781 ATPase, OSCP/delta subunit, conserved site YPN_3981 IPR000711 ATPase, OSCP/delta subunit YPN_3982 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast YPN_3982 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily YPN_3982 IPR005864 ATP synthase, F0 complex, subunit b, bacterial YPN_3983 IPR038662 F1F0 ATP synthase subunit C superfamily YPN_3983 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site YPN_3983 IPR000454 ATP synthase, F0 complex, subunit C YPN_3983 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast YPN_3983 IPR002379 V-ATPase proteolipid subunit C-like domain YPN_3983 IPR035921 F/V-ATP synthase subunit C superfamily YPN_3984 IPR035908 ATP synthase, F0 complex, subunit A superfamily YPN_3984 IPR023011 ATP synthase, F0 complex, subunit A, active site YPN_3984 IPR000568 ATP synthase, F0 complex, subunit A YPN_3985 IPR005598 ATP synthase protein I YPN_3986 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_3986 IPR003682 rRNA small subunit methyltransferase G YPN_3987 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG YPN_3987 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related YPN_3987 IPR036188 FAD/NAD(P)-binding domain superfamily YPN_3987 IPR020595 MnmG-related, conserved site YPN_3987 IPR026904 GidA associated domain 3 YPN_MT0001 IPR036397 Ribonuclease H superfamily YPN_MT0001 IPR001584 Integrase, catalytic core YPN_MT0001 IPR012337 Ribonuclease H-like superfamily YPN_MT0001 IPR017894 HTH domain, IS21 transposase-type YPN_MT0001 IPR006120 Resolvase, HTH domain YPN_MT0002 IPR003593 AAA+ ATPase domain YPN_MT0002 IPR001270 ClpA/B family YPN_MT0002 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_MT0002 IPR002611 IstB-like ATP-binding protein YPN_MT0002 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_MT0003 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly YPN_MT0004 IPR008969 Carboxypeptidase-like, regulatory domain superfamily YPN_MT0004 IPR037053 Phage tail collar domain superfamily YPN_MT0004 IPR037053 Phage tail collar domain superfamily YPN_MT0004 IPR013609 Bacteriophage 933W, L0121, tail fibre, N-terminal YPN_MT0004 IPR011083 Phage tail collar domain YPN_MT0004 IPR005003 Bacteriophage lambda, Stf, side tail fibre-repeat-1 YPN_MT0004 IPR013609 Bacteriophage 933W, L0121, tail fibre, N-terminal YPN_MT0004 IPR008969 Carboxypeptidase-like, regulatory domain superfamily YPN_MT0004 IPR005003 Bacteriophage lambda, Stf, side tail fibre-repeat-1 YPN_MT0004 IPR011083 Phage tail collar domain YPN_MT0011 IPR013491 Caudovirus, tape measure, N-terminal YPN_MT0030 IPR011527 ABC transporter type 1, transmembrane domain YPN_MT0030 IPR003593 AAA+ ATPase domain YPN_MT0030 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_MT0030 IPR005074 Peptidase C39, bacteriocin processing YPN_MT0030 IPR039395 Peptidase C39-like A YPN_MT0030 IPR017871 ABC transporter, conserved site YPN_MT0030 IPR003439 ABC transporter-like YPN_MT0030 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPN_MT0030 IPR010132 ATPase, type I secretion system, HlyB YPN_MT0030 IPR039421 Type I protein exporter YPN_MT0031 IPR036086 ParB/Sulfiredoxin superfamily YPN_MT0031 IPR004437 ParB/RepB/Spo0J partition protein YPN_MT0031 IPR003115 ParB/Sulfiredoxin YPN_MT0031 IPR041468 ParB/Spo0J, HTH domain YPN_MT0032 IPR036086 ParB/Sulfiredoxin superfamily YPN_MT0032 IPR003115 ParB/Sulfiredoxin YPN_MT0032 IPR004437 ParB/RepB/Spo0J partition protein YPN_MT0032 IPR041468 ParB/Spo0J, HTH domain YPN_MT0033 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_MT0033 IPR033454 RecG, wedge domain YPN_MT0033 IPR004609 ATP-dependent DNA helicase RecG YPN_MT0033 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPN_MT0033 IPR011545 DEAD/DEAH box helicase domain YPN_MT0033 IPR001650 Helicase, C-terminal YPN_MT0033 IPR012340 Nucleic acid-binding, OB-fold YPN_MT0046 IPR000525 Initiator Rep protein YPN_MT0052 IPR013765 DNA recombination and repair protein RecA YPN_MT0052 IPR020584 DNA recombination/repair protein RecA, conserved site YPN_MT0052 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_MT0052 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain YPN_MT0052 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface YPN_MT0052 IPR003593 AAA+ ATPase domain YPN_MT0052 IPR023400 DNA recombination and repair protein RecA, C-terminal YPN_MT0054 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal YPN_MT0054 IPR002421 5'-3' exonuclease, N-terminal YPN_MT0054 IPR036279 5'-3' exonuclease, C-terminal domain superfamily YPN_MT0054 IPR029060 PIN-like domain superfamily YPN_MT0054 IPR008918 Helix-hairpin-helix motif, class 2 YPN_MT0054 IPR038969 Flap endonuclease YPN_MT0054 IPR020045 DNA polymerase I-like, H3TH domain YPN_MT0059 IPR040982 DNA polymerase III alpha subunit finger domain YPN_MT0059 IPR029460 DNA polymerase, helix-hairpin-helix motif YPN_MT0059 IPR036895 Uracil-DNA glycosylase-like domain superfamily YPN_MT0059 IPR004805 DNA polymerase III, alpha subunit YPN_MT0059 IPR003141 Polymerase/histidinol phosphatase, N-terminal YPN_MT0059 IPR004013 PHP domain YPN_MT0059 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain YPN_MT0061 IPR002035 von Willebrand factor, type A YPN_MT0061 IPR006538 Cobalt chelatase, CobT subunit YPN_MT0061 IPR025861 Cobalamin biosynthesis protein CobT VWA domain YPN_MT0061 IPR036465 von Willebrand factor A-like domain superfamily YPN_MT0065 IPR025885 PapC, N-terminal domain YPN_MT0065 IPR025949 PapC-like, C-terminal domain YPN_MT0065 IPR042186 Outer membrane usher protein FimD, plug domain YPN_MT0065 IPR018030 Fimbrial membrane usher, conserved site YPN_MT0065 IPR000015 Outer membrane usher protein YPN_MT0065 IPR037224 PapC, N-terminal domain superfamily YPN_MT0066 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPN_MT0066 IPR001829 Pili assembly chaperone, bacterial YPN_MT0066 IPR016148 Pili assembly chaperone, C-terminal YPN_MT0066 IPR008962 PapD-like superfamily YPN_MT0066 IPR013783 Immunoglobulin-like fold YPN_MT0066 IPR016147 Pili assembly chaperone, N-terminal YPN_MT0066 IPR018046 Pili assembly chaperone, conserved site YPN_MT0070 IPR003593 AAA+ ATPase domain YPN_MT0070 IPR001270 ClpA/B family YPN_MT0070 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_MT0070 IPR002611 IstB-like ATP-binding protein YPN_MT0070 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_MT0071 IPR036397 Ribonuclease H superfamily YPN_MT0071 IPR012337 Ribonuclease H-like superfamily YPN_MT0071 IPR006120 Resolvase, HTH domain YPN_MT0071 IPR001584 Integrase, catalytic core YPN_MT0071 IPR017894 HTH domain, IS21 transposase-type YPN_MT0075 IPR001207 Transposase, mutator type YPN_MT0076 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal YPN_MT0076 IPR003346 Transposase, IS116/IS110/IS902 YPN_MT0077 IPR006842 Transposase (putative), YhgA-like YPN_MT0077 IPR010106 Recombination-promoting nuclease RpnA YPN_MT0078 IPR000477 Reverse transcriptase domain YPN_MT0080 IPR025202 Phospholipase D-like domain YPN_MT0080 IPR001736 Phospholipase D/Transphosphatidylase YPN_MT0082 IPR010106 Recombination-promoting nuclease RpnA YPN_MT0082 IPR006842 Transposase (putative), YhgA-like YPN_MT0083 IPR006118 Recombinase, conserved site YPN_MT0083 IPR006119 Resolvase, N-terminal catalytic domain YPN_MT0083 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily YPN_MT0083 IPR006120 Resolvase, HTH domain YPN_MT0085 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_MT0085 IPR025669 AAA domain YPN_MT0085 IPR041250 ParA helix turn helix domain YPN_MT0086 IPR036086 ParB/Sulfiredoxin superfamily YPN_MT0086 IPR014884 ParB protein family, C-terminal YPN_MT0086 IPR004437 ParB/RepB/Spo0J partition protein YPN_MT0086 IPR003115 ParB/Sulfiredoxin YPN_MT0088 IPR002941 DNA methylase N-4/N-6 YPN_MT0088 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPN_MT0088 IPR001091 Restriction/modification DNA-methylase YPN_MT0088 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPN_MT0090 IPR009811 Protein of unknown function DUF1380 YPN_MT0093 IPR038612 YkfF-like domain superfamily YPN_MT0093 IPR009253 Protein of unknown function DUF905 YPN_MT0094 IPR004437 ParB/RepB/Spo0J partition protein YPN_MT0094 IPR036086 ParB/Sulfiredoxin superfamily YPN_MT0094 IPR003115 ParB/Sulfiredoxin YPN_MT0100 IPR038699 F1 capsule antigen superfamily YPN_MT0100 IPR008966 Adhesion domain superfamily YPN_MT0100 IPR015335 F1 capsule antigen YPN_MT0101 IPR009057 Homeobox-like domain superfamily YPN_MT0101 IPR018060 DNA binding HTH domain, AraC-type YPN_MT0101 IPR018062 HTH domain AraC-type, conserved site YPN_MT0101 IPR011256 Regulatory factor, effector binding domain superfamily YPN_MT0101 IPR020449 Transcription regulator HTH, AraC- type YPN_MT0101 IPR029442 GyrI-like small molecule binding domain YPN_MT0103 IPR001126 UmuC domain YPN_MT0103 IPR025188 Domain of unknown function DUF4113 YPN_MT0103 IPR017961 DNA polymerase, Y-family, little finger domain YPN_MT0103 IPR036775 DNA polymerase, Y-family, little finger domain superfamily YPN_PCP0001 IPR017894 HTH domain, IS21 transposase-type YPN_PCP0001 IPR001584 Integrase, catalytic core YPN_PCP0001 IPR036397 Ribonuclease H superfamily YPN_PCP0001 IPR012337 Ribonuclease H-like superfamily YPN_PCP0001 IPR006120 Resolvase, HTH domain YPN_PCP0002 IPR003593 AAA+ ATPase domain YPN_PCP0002 IPR001270 ClpA/B family YPN_PCP0002 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPN_PCP0002 IPR002611 IstB-like ATP-binding protein YPN_PCP0002 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPN_PCP0005 IPR020080 Outer membrane adhesin/peptidase omptin YPN_PCP0005 IPR020079 Peptidase A26, omptin, conserved site YPN_PCP0005 IPR000036 Peptidase A26, omptin YPN_PCP0007 IPR009241 Toxin HigB-like YPN_PCP0008 IPR035962 Rop-like superfamily YPN_PCP0008 IPR000769 Regulatory protein Rop YPN_PCP0009 IPR000769 Regulatory protein Rop YPN_PCP0009 IPR035962 Rop-like superfamily