locus-tag class description YPN_0001 PF00258 Flavodoxin YPN_0002 PF01037 Lrp/AsnC ligand binding domain YPN_0003 PF03590 Aspartate-ammonia ligase YPN_0004 PF05762 VWA domain containing CoxE-like protein YPN_0005 PF07728 AAA domain (dynein-related subfamily) YPN_0005 PF17868 AAA lid domain YPN_0005 PF12592 Protein of unknown function (DUF3763) YPN_0006 PF02705 K+ potassium transporter YPN_0007 PF05025 RbsD / FucU transport protein family YPN_0008 PF00294 pfkB family carbohydrate kinase YPN_0010 PF07690 Major Facilitator Superfamily YPN_0011 PF00392 Bacterial regulatory proteins, gntR family YPN_0011 PF07729 FCD domain YPN_0012 PF04204 Homoserine O-succinyltransferase YPN_0014 PF01274 Malate synthase YPN_0015 PF00463 Isocitrate lyase family YPN_0016 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) YPN_0017 PF01614 Bacterial transcriptional regulator YPN_0017 PF09339 IclR helix-turn-helix domain YPN_0018 PF02574 Homocysteine S-methyltransferase YPN_0018 PF02310 B12 binding domain YPN_0018 PF02607 B12 binding domain YPN_0018 PF02965 Vitamin B12 dependent methionine synthase, activation domain YPN_0018 PF00809 Pterin binding enzyme YPN_0019 PF13332 Hemagglutinin repeat YPN_0019 PF05860 haemagglutination activity domain YPN_0020 PF08479 POTRA domain, ShlB-type YPN_0020 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPN_0020 PF17287 POTRA domain YPN_0021 PF08479 POTRA domain, ShlB-type YPN_0021 PF17287 POTRA domain YPN_0021 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPN_0022 PF01842 ACT domain YPN_0022 PF00696 Amino acid kinase family YPN_0023 PF00342 Phosphoglucose isomerase YPN_0024 PF06146 Phosphate-starvation-inducible E YPN_0025 PF00528 Binding-protein-dependent transport system inner membrane component YPN_0026 PF14785 Maltose transport system permease protein MalF P2 domain YPN_0026 PF00528 Binding-protein-dependent transport system inner membrane component YPN_0027 PF01547 Bacterial extracellular solute-binding protein YPN_0029 PF17912 MalK OB fold domain YPN_0029 PF00005 ABC transporter YPN_0030 PF02264 LamB porin YPN_0031 PF07148 Maltose operon periplasmic protein precursor (MalM) YPN_0033 PF05638 Type VI secretion system effector, Hcp YPN_0038 PF13333 Integrase core domain YPN_0038 PF13276 HTH-like domain YPN_0038 PF00665 Integrase core domain YPN_0040 PF00311 Phosphoenolpyruvate carboxylase YPN_0041 PF01546 Peptidase family M20/M25/M40 YPN_0041 PF07687 Peptidase dimerisation domain YPN_0042 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPN_0042 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPN_0043 PF00696 Amino acid kinase family YPN_0044 PF14698 Argininosuccinate lyase C-terminal YPN_0044 PF00206 Lyase YPN_0045 PF00593 TonB dependent receptor YPN_0045 PF07715 TonB-dependent Receptor Plug Domain YPN_0047 PF00005 ABC transporter YPN_0047 PF00664 ABC transporter transmembrane region YPN_0048 PF00529 HlyD membrane-fusion protein of T1SS YPN_0049 PF03544 Gram-negative bacterial TonB protein C-terminal YPN_0050 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPN_0050 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPN_0051 PF08534 Redoxin YPN_0051 PF00462 Glutaredoxin YPN_0052 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_0052 PF03466 LysR substrate binding domain YPN_0053 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPN_0053 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPN_0054 PF00440 Bacterial regulatory proteins, tetR family YPN_0055 PF07226 Protein of unknown function (DUF1422) YPN_0056 PF05958 tRNA (Uracil-5-)-methyltransferase YPN_0057 PF07715 TonB-dependent Receptor Plug Domain YPN_0057 PF00593 TonB dependent receptor YPN_0058 PF01177 Asp/Glu/Hydantoin racemase YPN_0059 PF13407 Periplasmic binding protein domain YPN_0060 PF00005 ABC transporter YPN_0061 PF02653 Branched-chain amino acid transport system / permease component YPN_0062 PF02653 Branched-chain amino acid transport system / permease component YPN_0063 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_0063 PF03466 LysR substrate binding domain YPN_0064 PF04219 Protein of unknown function, DUF YPN_0065 PF01078 Magnesium chelatase, subunit ChlI YPN_0065 PF13335 Magnesium chelatase, subunit ChlI C-terminal YPN_0066 PF00205 Thiamine pyrophosphate enzyme, central domain YPN_0066 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPN_0066 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPN_0068 PF01063 Amino-transferase class IV YPN_0069 PF00920 Dehydratase family YPN_0070 PF00291 Pyridoxal-phosphate dependent enzyme YPN_0070 PF00585 C-terminal regulatory domain of Threonine dehydratase YPN_0076 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_0076 PF03466 LysR substrate binding domain YPN_0077 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain YPN_0077 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain YPN_0081 PF01320 Colicin immunity protein / pyocin immunity protein YPN_0083 PF02753 Pili assembly chaperone PapD, C-terminal domain YPN_0083 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPN_0085 PF13953 PapC C-terminal domain YPN_0085 PF00577 Outer membrane usher protein YPN_0085 PF13954 PapC N-terminal domain YPN_0086 PF02753 Pili assembly chaperone PapD, C-terminal domain YPN_0086 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPN_0088 PF00872 Transposase, Mutator family YPN_0091 PF00580 UvrD/REP helicase N-terminal domain YPN_0091 PF13361 UvrD-like helicase C-terminal domain YPN_0092 PF02541 Ppx/GppA phosphatase family YPN_0093 PF02541 Ppx/GppA phosphatase family YPN_0094 PF00271 Helicase conserved C-terminal domain YPN_0094 PF00270 DEAD/DEAH box helicase YPN_0095 PF00085 Thioredoxin YPN_0096 PF07497 Rho termination factor, RNA-binding domain YPN_0096 PF07498 Rho termination factor, N-terminal domain YPN_0096 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPN_0097 PF00953 Glycosyl transferase family 4 YPN_0098 PF02706 Chain length determinant protein YPN_0099 PF02350 UDP-N-acetylglucosamine 2-epimerase YPN_0100 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPN_0100 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPN_0100 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPN_0101 PF16363 GDP-mannose 4,6 dehydratase YPN_0102 PF00483 Nucleotidyl transferase YPN_0104 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPN_0105 PF01943 Polysaccharide biosynthesis protein YPN_0106 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 YPN_0107 PF06899 WzyE protein, O-antigen assembly polymerase YPN_0108 PF03808 Glycosyl transferase WecB/TagA/CpsF family YPN_0109 PF00324 Amino acid permease YPN_0111 PF07719 Tetratricopeptide repeat YPN_0111 PF07219 HemY protein N-terminus YPN_0112 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase YPN_0113 PF02602 Uroporphyrinogen-III synthase HemD YPN_0114 PF03900 Porphobilinogen deaminase, C-terminal domain YPN_0114 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain YPN_0116 PF12633 Adenylate cyclase NT domain YPN_0116 PF01295 Adenylate cyclase, class-I YPN_0117 PF01491 Frataxin-like domain YPN_0118 PF13627 Prokaryotic lipoprotein-attachment site YPN_0119 PF01678 Diaminopimelate epimerase YPN_0120 PF04340 Protein of unknown function, DUF484 YPN_0121 PF02899 Phage integrase, N-terminal SAM-like domain YPN_0121 PF00589 Phage integrase family YPN_0122 PF13419 Haloacid dehalogenase-like hydrolase YPN_0123 PF13361 UvrD-like helicase C-terminal domain YPN_0123 PF00580 UvrD/REP helicase N-terminal domain YPN_0126 PF09370 Phosphoenolpyruvate hydrolase-like YPN_0127 PF01544 CorA-like Mg2+ transporter protein YPN_0128 PF00892 EamA-like transporter family YPN_0129 PF03061 Thioesterase superfamily YPN_0130 PF02253 Phospholipase A1 YPN_0131 PF00270 DEAD/DEAH box helicase YPN_0131 PF00271 Helicase conserved C-terminal domain YPN_0131 PF00570 HRDC domain YPN_0131 PF16124 RecQ zinc-binding YPN_0131 PF09382 RQC domain YPN_0132 PF01810 LysE type translocator YPN_0133 PF01810 LysE type translocator YPN_0134 PF12146 Serine aminopeptidase, S33 YPN_0137 PF03009 Glycerophosphoryl diester phosphodiesterase family YPN_0138 PF04324 BFD-like [2Fe-2S] binding domain YPN_0138 PF01266 FAD dependent oxidoreductase YPN_0139 PF00890 FAD binding domain YPN_0140 PF13183 4Fe-4S dicluster domain YPN_0140 PF02754 Cysteine-rich domain YPN_0141 PF08786 DcrB YPN_0142 PF02592 Putative vitamin uptake transporter YPN_0143 PF01206 Sulfurtransferase TusA YPN_0144 PF00403 Heavy-metal-associated domain YPN_0145 PF07947 YhhN family YPN_0148 PF06611 Protein of unknown function (DUF1145) YPN_0150 PF00448 SRP54-type protein, GTPase domain YPN_0150 PF02881 SRP54-type protein, helical bundle domain YPN_0150 PF00448 SRP54-type protein, GTPase domain YPN_0150 PF02881 SRP54-type protein, helical bundle domain YPN_0151 PF00005 ABC transporter YPN_0152 PF02687 FtsX-like permease family YPN_0152 PF18075 FtsX extracellular domain YPN_0153 PF00140 Sigma-70 factor, region 1.2 YPN_0153 PF04542 Sigma-70 region 2 YPN_0153 PF04545 Sigma-70, region 4 YPN_0154 PF01797 Transposase IS200 like YPN_0155 PF12568 Acetyltransferase (GNAT) domain, PanZ YPN_0156 PF13458 Periplasmic binding protein YPN_0157 PF02653 Branched-chain amino acid transport system / permease component YPN_0158 PF02653 Branched-chain amino acid transport system / permease component YPN_0158 PF11862 Domain of unknown function (DUF3382) YPN_0159 PF00005 ABC transporter YPN_0159 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPN_0160 PF00005 ABC transporter YPN_0168 PF13416 Bacterial extracellular solute-binding protein YPN_0169 PF00528 Binding-protein-dependent transport system inner membrane component YPN_0170 PF00528 Binding-protein-dependent transport system inner membrane component YPN_0171 PF17912 MalK OB fold domain YPN_0171 PF00005 ABC transporter YPN_0172 PF03009 Glycerophosphoryl diester phosphodiesterase family YPN_0173 PF03547 Membrane transport protein YPN_0174 PF00892 EamA-like transporter family YPN_0175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_0175 PF03466 LysR substrate binding domain YPN_0176 PF08267 Cobalamin-independent synthase, N-terminal domain YPN_0176 PF01717 Cobalamin-independent synthase, Catalytic domain YPN_0177 PF01738 Dienelactone hydrolase family YPN_0178 PF01048 Phosphorylase superfamily YPN_0180 PF02554 Carbon starvation protein CstA YPN_0180 PF13722 5TM C-terminal transporter carbon starvation CstA YPN_0181 PF09335 SNARE associated Golgi protein YPN_0182 PF02646 RmuC family YPN_0183 PF01209 ubiE/COQ5 methyltransferase family YPN_0184 PF02036 SCP-2 sterol transfer family YPN_0185 PF03109 ABC1 family YPN_0186 PF02416 mttA/Hcf106 family YPN_0188 PF00902 Sec-independent protein translocase protein (TatC) YPN_0189 PF01026 TatD related DNase YPN_0190 PF02796 Helix-turn-helix domain of resolvase YPN_0190 PF00665 Integrase core domain YPN_0191 PF01695 IstB-like ATP binding protein YPN_0192 PF01026 TatD related DNase YPN_0193 PF00490 Delta-aminolevulinic acid dehydratase YPN_0194 PF02357 Transcription termination factor nusG YPN_0195 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YPN_0196 PF00175 Oxidoreductase NAD-binding domain YPN_0196 PF00970 Oxidoreductase FAD-binding domain YPN_0197 PF02803 Thiolase, C-terminal domain YPN_0197 PF00108 Thiolase, N-terminal domain YPN_0198 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPN_0198 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPN_0198 PF00378 Enoyl-CoA hydratase/isomerase YPN_0199 PF00557 Metallopeptidase family M24 YPN_0200 PF09186 Domain of unknown function (DUF1949) YPN_0200 PF01205 Uncharacterized protein family UPF0029 YPN_0202 PF01205 Uncharacterized protein family UPF0029 YPN_0202 PF09186 Domain of unknown function (DUF1949) YPN_0203 PF02386 Cation transport protein YPN_0204 PF12724 Flavodoxin domain YPN_0205 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain YPN_0205 PF01565 FAD binding domain YPN_0206 PF08279 HTH domain YPN_0206 PF03099 Biotin/lipoate A/B protein ligase family YPN_0206 PF02237 Biotin protein ligase C terminal domain YPN_0207 PF00485 Phosphoribulokinase / Uridine kinase family YPN_0208 PF13673 Acetyltransferase (GNAT) domain YPN_0209 PF02796 Helix-turn-helix domain of resolvase YPN_0209 PF00665 Integrase core domain YPN_0210 PF01695 IstB-like ATP binding protein YPN_0211 PF00009 Elongation factor Tu GTP binding domain YPN_0211 PF03144 Elongation factor Tu domain 2 YPN_0211 PF03143 Elongation factor Tu C-terminal domain YPN_0212 PF03144 Elongation factor Tu domain 2 YPN_0212 PF03143 Elongation factor Tu C-terminal domain YPN_0212 PF00009 Elongation factor Tu GTP binding domain YPN_0213 PF00584 SecE/Sec61-gamma subunits of protein translocation complex YPN_0214 PF00467 KOW motif YPN_0214 PF02357 Transcription termination factor nusG YPN_0215 PF03946 Ribosomal protein L11, N-terminal domain YPN_0215 PF00298 Ribosomal protein L11, RNA binding domain YPN_0216 PF00687 Ribosomal protein L1p/L10e family YPN_0217 PF00466 Ribosomal protein L10 YPN_0218 PF00542 Ribosomal protein L7/L12 C-terminal domain YPN_0218 PF16320 Ribosomal protein L7/L12 dimerisation domain YPN_0219 PF04565 RNA polymerase Rpb2, domain 3 YPN_0219 PF00562 RNA polymerase Rpb2, domain 6 YPN_0219 PF10385 RNA polymerase beta subunit external 1 domain YPN_0219 PF04563 RNA polymerase beta subunit YPN_0219 PF04561 RNA polymerase Rpb2, domain 2 YPN_0219 PF04560 RNA polymerase Rpb2, domain 7 YPN_0220 PF04997 RNA polymerase Rpb1, domain 1 YPN_0220 PF00623 RNA polymerase Rpb1, domain 2 YPN_0220 PF04983 RNA polymerase Rpb1, domain 3 YPN_0220 PF04998 RNA polymerase Rpb1, domain 5 YPN_0220 PF05000 RNA polymerase Rpb1, domain 4 YPN_0221 PF01797 Transposase IS200 like YPN_0222 PF06968 Biotin and Thiamin Synthesis associated domain YPN_0222 PF04055 Radical SAM superfamily YPN_0223 PF05690 Thiazole biosynthesis protein ThiG YPN_0225 PF00899 ThiF family YPN_0226 PF02581 Thiamine monophosphate synthase YPN_0227 PF01964 Radical SAM ThiC family YPN_0227 PF13667 ThiC-associated domain YPN_0228 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ YPN_0229 PF00293 NUDIX domain YPN_0229 PF09297 NADH pyrophosphatase zinc ribbon domain YPN_0231 PF01208 Uroporphyrinogen decarboxylase (URO-D) YPN_0232 PF04493 Endonuclease V YPN_0233 PF04222 Protein of unknown function (DUF416) YPN_0234 PF00216 Bacterial DNA-binding protein YPN_0235 PF07356 Protein of unknown function (DUF1481) YPN_0236 PF02843 Phosphoribosylglycinamide synthetase, C domain YPN_0236 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YPN_0236 PF02844 Phosphoribosylglycinamide synthetase, N domain YPN_0237 PF01808 AICARFT/IMPCHase bienzyme YPN_0237 PF02142 MGS-like domain YPN_0238 PF00872 Transposase, Mutator family YPN_0239 PF03205 Molybdopterin guanine dinucleotide synthesis protein B YPN_0240 PF12804 MobA-like NTP transferase domain YPN_0241 PF06288 Protein of unknown function (DUF1040) YPN_0242 PF01636 Phosphotransferase enzyme family YPN_0243 PF01323 DSBA-like thioredoxin domain YPN_0244 PF00476 DNA polymerase family A YPN_0244 PF01367 5'-3' exonuclease, C-terminal SAM fold YPN_0244 PF01612 3'-5' exonuclease YPN_0244 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPN_0245 PF01797 Transposase IS200 like YPN_0246 PF01926 50S ribosome-binding GTPase YPN_0247 PF04220 Der GTPase activator (YihI) YPN_0248 PF06969 HemN C-terminal domain YPN_0248 PF04055 Radical SAM superfamily YPN_0249 PF00158 Sigma-54 interaction domain YPN_0249 PF00072 Response regulator receiver domain YPN_0249 PF02954 Bacterial regulatory protein, Fis family YPN_0250 PF00989 PAS fold YPN_0250 PF00512 His Kinase A (phospho-acceptor) domain YPN_0250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_0251 PF03951 Glutamine synthetase, beta-Grasp domain YPN_0251 PF00120 Glutamine synthetase, catalytic domain YPN_0253 PF13419 Haloacid dehalogenase-like hydrolase YPN_0254 PF03631 Virulence factor BrkB YPN_0255 PF02580 D-Tyr-tRNA(Tyr) deacylase YPN_0256 PF01695 IstB-like ATP binding protein YPN_0257 PF02796 Helix-turn-helix domain of resolvase YPN_0257 PF00665 Integrase core domain YPN_0258 PF07728 AAA domain (dynein-related subfamily) YPN_0258 PF12102 Domain of unknown function (DUF3578) YPN_0262 PF01555 DNA methylase YPN_0266 PF00665 Integrase core domain YPN_0269 PF05987 Bacterial protein of unknown function (DUF898) YPN_0271 PF12833 Helix-turn-helix domain YPN_0272 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPN_0273 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPN_0275 PF00381 PTS HPr component phosphorylation site YPN_0275 PF02896 PEP-utilising enzyme, TIM barrel domain YPN_0275 PF00391 PEP-utilising enzyme, mobile domain YPN_0275 PF05524 PEP-utilising enzyme, N-terminal YPN_0275 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPN_0276 PF10696 Protein of unknown function (DUF2501) YPN_0277 PF03992 Antibiotic biosynthesis monooxygenase YPN_0278 PF01791 DeoC/LacD family aldolase YPN_0279 PF13407 Periplasmic binding protein domain YPN_0280 PF02653 Branched-chain amino acid transport system / permease component YPN_0281 PF02653 Branched-chain amino acid transport system / permease component YPN_0282 PF00005 ABC transporter YPN_0284 PF04198 Putative sugar-binding domain YPN_0284 PF00325 Bacterial regulatory proteins, crp family YPN_0285 PF04198 Putative sugar-binding domain YPN_0285 PF00325 Bacterial regulatory proteins, crp family YPN_0286 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPN_0286 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPN_0287 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPN_0290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPN_0291 PF00873 AcrB/AcrD/AcrF family YPN_0294 PF01095 Pectinesterase YPN_0295 PF00990 Diguanylate cyclase, GGDEF domain YPN_0297 PF07256 Protein of unknown function (DUF1435) YPN_0298 PF08468 Methyltransferase small domain N-terminal YPN_0298 PF05175 Methyltransferase small domain YPN_0299 PF03603 DNA polymerase III psi subunit YPN_0300 PF00583 Acetyltransferase (GNAT) family YPN_0301 PF03144 Elongation factor Tu domain 2 YPN_0301 PF16658 Class II release factor RF3, C-terminal domain YPN_0301 PF00009 Elongation factor Tu GTP binding domain YPN_0302 PF04972 BON domain YPN_0303 PF07043 Protein of unknown function (DUF1328) YPN_0304 PF01734 Patatin-like phospholipase YPN_0305 PF01026 TatD related DNase YPN_0306 PF01773 Na+ dependent nucleoside transporter N-terminus YPN_0306 PF07670 Nucleoside recognition YPN_0306 PF07662 Na+ dependent nucleoside transporter C-terminus YPN_0307 PF01791 DeoC/LacD family aldolase YPN_0308 PF02885 Glycosyl transferase family, helical bundle domain YPN_0308 PF00591 Glycosyl transferase family, a/b domain YPN_0308 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain YPN_0309 PF02885 Glycosyl transferase family, helical bundle domain YPN_0309 PF00591 Glycosyl transferase family, a/b domain YPN_0309 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain YPN_0310 PF01676 Metalloenzyme superfamily YPN_0311 PF01048 Phosphorylase superfamily YPN_0312 PF10144 Bacterial virulence factor haemolysin YPN_0313 PF18429 Domain of unknown function (DUF5609) YPN_0314 PF18073 Rubredoxin metal binding domain YPN_0315 PF01381 Helix-turn-helix YPN_0315 PF13521 AAA domain YPN_0317 PF00005 ABC transporter YPN_0317 PF12848 ABC transporter YPN_0318 PF00005 ABC transporter YPN_0318 PF12848 ABC transporter YPN_0319 PF00691 OmpA family YPN_0320 PF17152 Periplasmic sensor domain YPN_0320 PF00990 Diguanylate cyclase, GGDEF domain YPN_0322 PF00689 Cation transporting ATPase, C-terminus YPN_0322 PF00690 Cation transporter/ATPase, N-terminus YPN_0323 PF14718 Soluble lytic murein transglycosylase L domain YPN_0323 PF01464 Transglycosylase SLT domain YPN_0324 PF01371 Trp repressor protein YPN_0325 PF01931 Protein of unknown function DUF84 YPN_0326 PF00300 Histidine phosphatase superfamily (branch 1) YPN_0327 PF06445 GyrI-like small molecule binding domain YPN_0327 PF12833 Helix-turn-helix domain YPN_0328 PF05981 CreA protein YPN_0329 PF00072 Response regulator receiver domain YPN_0329 PF00486 Transcriptional regulatory protein, C terminal YPN_0331 PF00696 Amino acid kinase family YPN_0331 PF13840 ACT domain YPN_0331 PF00742 Homoserine dehydrogenase YPN_0331 PF03447 Homoserine dehydrogenase, NAD binding domain YPN_0331 PF01842 ACT domain YPN_0332 PF08544 GHMP kinases C terminal YPN_0332 PF00288 GHMP kinases N terminal domain YPN_0333 PF00291 Pyridoxal-phosphate dependent enzyme YPN_0333 PF14821 Threonine synthase N terminus YPN_0334 PF03883 Peroxide stress protein YaaA YPN_0335 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPN_0337 PF00994 Probable molybdopterin binding domain YPN_0338 PF07690 Major Facilitator Superfamily YPN_0340 PF01184 GPR1/FUN34/yaaH family YPN_0341 PF00012 Hsp70 protein YPN_0342 PF00226 DnaJ domain YPN_0342 PF00684 DnaJ central domain YPN_0342 PF01556 DnaJ C terminal domain YPN_0343 PF06965 Na+/H+ antiporter 1 YPN_0344 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_0344 PF03466 LysR substrate binding domain YPN_0345 PF01649 Ribosomal protein S20 YPN_0346 PF01687 Riboflavin kinase YPN_0346 PF06574 FAD synthetase YPN_0347 PF00133 tRNA synthetases class I (I, L, M and V) YPN_0347 PF08264 Anticodon-binding domain of tRNA YPN_0347 PF06827 Zinc finger found in FPG and IleRS YPN_0348 PF01252 Signal peptidase (SPase) II YPN_0349 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPN_0350 PF02401 LytB protein YPN_0352 PF01797 Transposase IS200 like YPN_0353 PF01113 Dihydrodipicolinate reductase, N-terminus YPN_0353 PF05173 Dihydrodipicolinate reductase, C-terminus YPN_0354 PF00117 Glutamine amidotransferase class-I YPN_0354 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain YPN_0355 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YPN_0355 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPN_0355 PF02142 MGS-like domain YPN_0356 PF01810 LysE type translocator YPN_0357 PF06738 Putative threonine/serine exporter YPN_0358 PF12821 Threonine/Serine exporter, ThrE YPN_0359 PF00186 Dihydrofolate reductase YPN_0360 PF01797 Transposase IS200 like YPN_0364 PF00149 Calcineurin-like phosphoesterase YPN_0365 PF04379 ApaG domain YPN_0366 PF00398 Ribosomal RNA adenine dimethylase YPN_0367 PF04166 Pyridoxal phosphate biosynthetic protein PdxA YPN_0368 PF09312 SurA N-terminal domain YPN_0368 PF00639 PPIC-type PPIASE domain YPN_0369 PF03968 OstA-like protein YPN_0369 PF04453 LPS transport system D YPN_0370 PF05099 Tellurite resistance protein TerB YPN_0370 PF00226 DnaJ domain YPN_0371 PF00849 RNA pseudouridylate synthase YPN_0381 PF00004 ATPase family associated with various cellular activities (AAA) YPN_0381 PF07724 AAA domain (Cdc48 subfamily) YPN_0381 PF10431 C-terminal, D2-small domain, of ClpB protein YPN_0381 PF17871 AAA lid domain YPN_0382 PF04717 Type VI secretion system, phage-baseplate injector YPN_0389 PF05736 OprF membrane domain YPN_0389 PF00691 OmpA family YPN_0392 PF18337 RapA N-terminal Tudor like domain YPN_0392 PF00176 SNF2 family N-terminal domain YPN_0392 PF18339 RapA N-terminal Tudor like domain 1 YPN_0392 PF00271 Helicase conserved C-terminal domain YPN_0392 PF12137 RNA polymerase recycling family C-terminal YPN_0393 PF03104 DNA polymerase family B, exonuclease domain YPN_0393 PF00136 DNA polymerase family B YPN_0394 PF09335 SNARE associated Golgi protein YPN_0395 PF00005 ABC transporter YPN_0396 PF00528 Binding-protein-dependent transport system inner membrane component YPN_0398 PF12793 Sugar transport-related sRNA regulator N-term YPN_0398 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPN_0399 PF07690 Major Facilitator Superfamily YPN_0400 PF00694 Aconitase C-terminal domain YPN_0401 PF00330 Aconitase family (aconitate hydratase) YPN_0402 PF00180 Isocitrate/isopropylmalate dehydrogenase YPN_0403 PF00682 HMGL-like YPN_0403 PF08502 LeuA allosteric (dimerisation) domain YPN_0404 PF01797 Transposase IS200 like YPN_0405 PF03466 LysR substrate binding domain YPN_0405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_0406 PF00501 AMP-binding enzyme YPN_0407 PF00205 Thiamine pyrophosphate enzyme, central domain YPN_0407 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPN_0407 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPN_0408 PF10369 Small subunit of acetolactate synthase YPN_0409 PF01797 Transposase IS200 like YPN_0410 PF00356 Bacterial regulatory proteins, lacI family YPN_0410 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPN_0411 PF06610 L-alanine exporter YPN_0412 PF02381 MraZ protein, putative antitoxin-like YPN_0413 PF01795 MraW methylase family YPN_0414 PF04999 Cell division protein FtsL YPN_0415 PF00905 Penicillin binding protein transpeptidase domain YPN_0415 PF03717 Penicillin-binding Protein dimerisation domain YPN_0416 PF02875 Mur ligase family, glutamate ligase domain YPN_0416 PF08245 Mur ligase middle domain YPN_0416 PF01225 Mur ligase family, catalytic domain YPN_0417 PF01225 Mur ligase family, catalytic domain YPN_0417 PF02875 Mur ligase family, glutamate ligase domain YPN_0417 PF08245 Mur ligase middle domain YPN_0418 PF00953 Glycosyl transferase family 4 YPN_0418 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 YPN_0419 PF02875 Mur ligase family, glutamate ligase domain YPN_0419 PF08245 Mur ligase middle domain YPN_0420 PF01098 Cell cycle protein YPN_0421 PF04101 Glycosyltransferase family 28 C-terminal domain YPN_0421 PF03033 Glycosyltransferase family 28 N-terminal domain YPN_0422 PF01225 Mur ligase family, catalytic domain YPN_0422 PF02875 Mur ligase family, glutamate ligase domain YPN_0422 PF08245 Mur ligase middle domain YPN_0423 PF07478 D-ala D-ala ligase C-terminus YPN_0423 PF01820 D-ala D-ala ligase N-terminus YPN_0424 PF08478 POTRA domain, FtsQ-type YPN_0424 PF03799 Cell division protein FtsQ YPN_0425 PF02491 SHS2 domain inserted in FTSA YPN_0426 PF12327 FtsZ family, C-terminal domain YPN_0426 PF00091 Tubulin/FtsZ family, GTPase domain YPN_0427 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase YPN_0429 PF06558 Secretion monitor precursor protein (SecM) YPN_0430 PF07516 SecA Wing and Scaffold domain YPN_0430 PF02810 SEC-C motif YPN_0430 PF01043 SecA preprotein cross-linking domain YPN_0430 PF07517 SecA DEAD-like domain YPN_0431 PF00293 NUDIX domain YPN_0433 PF01695 IstB-like ATP binding protein YPN_0434 PF00665 Integrase core domain YPN_0434 PF02796 Helix-turn-helix domain of resolvase YPN_0435 PF13409 Glutathione S-transferase, N-terminal domain YPN_0436 PF07681 DoxX YPN_0438 PF07332 Putative Actinobacterial Holin-X, holin superfamily III YPN_0439 PF05957 Bacterial protein of unknown function (DUF883) YPN_0442 PF13721 SecD export protein N-terminal TM region YPN_0443 PF09335 SNARE associated Golgi protein YPN_0445 PF07729 FCD domain YPN_0445 PF00392 Bacterial regulatory proteins, gntR family YPN_0446 PF07690 Major Facilitator Superfamily YPN_0447 PF02614 Glucuronate isomerase YPN_0448 PF02614 Glucuronate isomerase YPN_0449 PF08125 Mannitol dehydrogenase C-terminal domain YPN_0449 PF01232 Mannitol dehydrogenase Rossmann domain YPN_0450 PF08666 SAF domain YPN_0450 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus YPN_0451 PF10688 Bacterial inner membrane protein YPN_0452 PF01797 Transposase IS200 like YPN_0453 PF00375 Sodium:dicarboxylate symporter family YPN_0454 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPN_0455 PF01863 Protein of unknown function DUF45 YPN_0456 PF03797 Autotransporter beta-domain YPN_0457 PF05175 Methyltransferase small domain YPN_0458 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPN_0458 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPN_0459 PF03729 Short repeat of unknown function (DUF308) YPN_0462 PF00092 von Willebrand factor type A domain YPN_0464 PF02342 TerD domain YPN_0465 PF00092 von Willebrand factor type A domain YPN_0466 PF08479 POTRA domain, ShlB-type YPN_0466 PF17287 POTRA domain YPN_0466 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPN_0467 PF13332 Hemagglutinin repeat YPN_0467 PF13018 Extended Signal Peptide of Type V secretion system YPN_0467 PF04829 Pre-toxin domain with VENN motif YPN_0467 PF05860 haemagglutination activity domain YPN_0468 PF05860 haemagglutination activity domain YPN_0468 PF13018 Extended Signal Peptide of Type V secretion system YPN_0468 PF04829 Pre-toxin domain with VENN motif YPN_0468 PF13332 Hemagglutinin repeat YPN_0472 PF00005 ABC transporter YPN_0472 PF03459 TOBE domain YPN_0472 PF17912 MalK OB fold domain YPN_0473 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain YPN_0474 PF00356 Bacterial regulatory proteins, lacI family YPN_0475 PF13416 Bacterial extracellular solute-binding protein YPN_0476 PF00528 Binding-protein-dependent transport system inner membrane component YPN_0477 PF00528 Binding-protein-dependent transport system inner membrane component YPN_0479 PF14310 Fibronectin type III-like domain YPN_0479 PF00933 Glycosyl hydrolase family 3 N terminal domain YPN_0479 PF01915 Glycosyl hydrolase family 3 C-terminal domain YPN_0481 PF04632 Fusaric acid resistance protein family YPN_0482 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPN_0482 PF00529 HlyD membrane-fusion protein of T1SS YPN_0490 PF01042 Endoribonuclease L-PSP YPN_0494 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_0494 PF03466 LysR substrate binding domain YPN_0503 PF00140 Sigma-70 factor, region 1.2 YPN_0503 PF04542 Sigma-70 region 2 YPN_0503 PF04539 Sigma-70 region 3 YPN_0503 PF04545 Sigma-70, region 4 YPN_0503 PF04546 Sigma-70, non-essential region YPN_0503 PF03979 Sigma-70 factor, region 1.1 YPN_0504 PF01807 CHC2 zinc finger YPN_0504 PF08278 DNA primase DnaG DnaB-binding YPN_0504 PF08275 DNA primase catalytic core, N-terminal domain YPN_0504 PF10410 DnaB-helicase binding domain of primase YPN_0505 PF01165 Ribosomal protein S21 YPN_0506 PF00814 Glycoprotease family YPN_0507 PF02660 Glycerol-3-phosphate acyltransferase YPN_0508 PF02152 Dihydroneopterin aldolase YPN_0509 PF02673 Bacitracin resistance protein BacA YPN_0510 PF01743 Poly A polymerase head domain YPN_0510 PF01966 HD domain YPN_0510 PF12627 Probable RNA and SrmB- binding site of polymerase A YPN_0511 PF08239 Bacterial SH3 domain YPN_0512 PF01928 CYTH domain YPN_0513 PF08335 GlnD PII-uridylyltransferase YPN_0513 PF03710 Glutamate-ammonia ligase adenylyltransferase YPN_0514 PF01467 Cytidylyltransferase-like YPN_0514 PF00294 pfkB family carbohydrate kinase YPN_0515 PF13520 Amino acid permease YPN_0516 PF04380 Membrane fusogenic activity YPN_0517 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase YPN_0518 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPN_0519 PF03738 Glutathionylspermidine synthase preATP-grasp YPN_0520 PF06693 Protein of unknown function (DUF1190) YPN_0521 PF02321 Outer membrane efflux protein YPN_0522 PF00293 NUDIX domain YPN_0523 PF06853 Protein of unknown function (DUF1249) YPN_0524 PF00149 Calcineurin-like phosphoesterase YPN_0525 PF05728 Uncharacterised protein family (UPF0227) YPN_0526 PF01751 Toprim domain YPN_0526 PF00986 DNA gyrase B subunit, carboxyl terminus YPN_0526 PF00204 DNA gyrase B YPN_0526 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_0527 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_0527 PF03466 LysR substrate binding domain YPN_0528 PF02525 Flavodoxin-like fold YPN_0529 PF03989 DNA gyrase C-terminal domain, beta-propeller YPN_0529 PF00521 DNA gyrase/topoisomerase IV, subunit A YPN_0530 PF01553 Acyltransferase YPN_0531 PF07731 Multicopper oxidase YPN_0531 PF07732 Multicopper oxidase YPN_0532 PF11842 Domain of unknown function (DUF3362) YPN_0532 PF04055 Radical SAM superfamily YPN_0532 PF08497 Radical SAM N-terminal YPN_0533 PF08497 Radical SAM N-terminal YPN_0533 PF11842 Domain of unknown function (DUF3362) YPN_0533 PF04055 Radical SAM superfamily YPN_0534 PF00248 Aldo/keto reductase family YPN_0535 PF00465 Iron-containing alcohol dehydrogenase YPN_0536 PF06719 AraC-type transcriptional regulator N-terminus YPN_0536 PF12833 Helix-turn-helix domain YPN_0537 PF09335 SNARE associated Golgi protein YPN_0538 PF01053 Cys/Met metabolism PLP-dependent enzyme YPN_0539 PF01618 MotA/TolQ/ExbB proton channel family YPN_0540 PF02472 Biopolymer transport protein ExbD/TolR YPN_0547 PF00437 Type II/IV secretion system protein YPN_0550 PF04972 BON domain YPN_0550 PF00263 Bacterial type II and III secretion system protein YPN_0550 PF13629 Pilus formation protein N terminal region YPN_0551 PF04972 BON domain YPN_0551 PF00263 Bacterial type II and III secretion system protein YPN_0551 PF13629 Pilus formation protein N terminal region YPN_0555 PF13953 PapC C-terminal domain YPN_0555 PF00577 Outer membrane usher protein YPN_0555 PF13954 PapC N-terminal domain YPN_0556 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPN_0556 PF02753 Pili assembly chaperone PapD, C-terminal domain YPN_0557 PF09222 Fimbrial adhesin F17-AG, lectin domain YPN_0557 PF00419 Fimbrial protein YPN_0558 PF01497 Periplasmic binding protein YPN_0562 PF00771 FHIPEP family YPN_0563 PF00771 FHIPEP family YPN_0564 PF01312 FlhB HrpN YscU SpaS Family YPN_0565 PF01311 Bacterial export proteins, family 1 YPN_0566 PF01313 Bacterial export proteins, family 3 YPN_0567 PF00813 FliP family YPN_0568 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPN_0570 PF00158 Sigma-54 interaction domain YPN_0570 PF00072 Response regulator receiver domain YPN_0570 PF02954 Bacterial regulatory protein, Fis family YPN_0571 PF02049 Flagellar hook-basal body complex protein FliE YPN_0572 PF08345 Flagellar M-ring protein C-terminal YPN_0572 PF01514 Secretory protein of YscJ/FliF family YPN_0575 PF18269 T3SS EscN ATPase C-terminal domain YPN_0575 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPN_0579 PF13144 Chaperone for flagella basal body P-ring formation YPN_0580 PF00460 Flagella basal body rod protein YPN_0581 PF00460 Flagella basal body rod protein YPN_0581 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPN_0582 PF13861 FlgD Tudor-like domain YPN_0582 PF03963 Flagellar hook capping protein - N-terminal region YPN_0582 PF13860 FlgD Ig-like domain YPN_0583 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPN_0583 PF07559 Flagellar basal body protein FlaE YPN_0583 PF00460 Flagella basal body rod protein YPN_0584 PF00460 Flagella basal body rod protein YPN_0584 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPN_0585 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPN_0585 PF00460 Flagella basal body rod protein YPN_0586 PF02107 Flagellar L-ring protein YPN_0587 PF02119 Flagellar P-ring protein YPN_0589 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPN_0589 PF00460 Flagella basal body rod protein YPN_0593 PF00486 Transcriptional regulatory protein, C terminal YPN_0593 PF18500 CadC C-terminal domain 1 YPN_0594 PF00700 Bacterial flagellin C-terminal helical region YPN_0594 PF00669 Bacterial flagellin N-terminal helical region YPN_0596 PF13276 HTH-like domain YPN_0596 PF13333 Integrase core domain YPN_0596 PF00665 Integrase core domain YPN_0597 PF00013 KH domain YPN_0597 PF01138 3' exoribonuclease family, domain 1 YPN_0597 PF00575 S1 RNA binding domain YPN_0597 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain YPN_0597 PF03725 3' exoribonuclease family, domain 2 YPN_0598 PF13181 Tetratricopeptide repeat YPN_0598 PF07719 Tetratricopeptide repeat YPN_0599 PF00271 Helicase conserved C-terminal domain YPN_0599 PF12343 Cold shock protein DEAD box A YPN_0599 PF00270 DEAD/DEAH box helicase YPN_0599 PF03880 DbpA RNA binding domain YPN_0602 PF01381 Helix-turn-helix YPN_0603 PF00296 Luciferase-like monooxygenase YPN_0604 PF00529 HlyD membrane-fusion protein of T1SS YPN_0604 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPN_0605 PF00873 AcrB/AcrD/AcrF family YPN_0606 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPN_0606 PF02321 Outer membrane efflux protein YPN_0611 PF13508 Acetyltransferase (GNAT) domain YPN_0612 PF01541 GIY-YIG catalytic domain YPN_0615 PF13416 Bacterial extracellular solute-binding protein YPN_0617 PF00528 Binding-protein-dependent transport system inner membrane component YPN_0618 PF17912 MalK OB fold domain YPN_0618 PF03459 TOBE domain YPN_0618 PF00005 ABC transporter YPN_0621 PF13460 NAD(P)H-binding YPN_0622 PF12706 Beta-lactamase superfamily domain YPN_0624 PF07969 Amidohydrolase family YPN_0625 PF00005 ABC transporter YPN_0626 PF00005 ABC transporter YPN_0627 PF06007 Phosphonate metabolism protein PhnJ YPN_0628 PF05861 Bacterial phosphonate metabolism protein (PhnI) YPN_0629 PF05845 Bacterial phosphonate metabolism protein (PhnH) YPN_0630 PF05845 Bacterial phosphonate metabolism protein (PhnH) YPN_0631 PF06754 Phosphonate metabolism protein PhnG YPN_0632 PF00392 Bacterial regulatory proteins, gntR family YPN_0632 PF07702 UTRA domain YPN_0634 PF03477 ATP cone domain YPN_0634 PF13597 Anaerobic ribonucleoside-triphosphate reductase YPN_0635 PF00005 ABC transporter YPN_0635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPN_0636 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPN_0636 PF00005 ABC transporter YPN_0637 PF12911 N-terminal TM domain of oligopeptide transport permease C YPN_0637 PF00528 Binding-protein-dependent transport system inner membrane component YPN_0638 PF00528 Binding-protein-dependent transport system inner membrane component YPN_0641 PF04074 YhcH/YjgK/YiaL YPN_0642 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPN_0642 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPN_0643 PF06877 Regulator of ribonuclease activity B YPN_0644 PF00583 Acetyltransferase (GNAT) family YPN_0645 PF08264 Anticodon-binding domain of tRNA YPN_0645 PF00133 tRNA synthetases class I (I, L, M and V) YPN_0645 PF10458 Valyl tRNA synthetase tRNA binding arm YPN_0646 PF04364 DNA polymerase III chi subunit, HolC YPN_0647 PF02789 Cytosol aminopeptidase family, N-terminal domain YPN_0647 PF00883 Cytosol aminopeptidase family, catalytic domain YPN_0648 PF03739 Lipopolysaccharide export system permease LptF/LptG YPN_0649 PF03739 Lipopolysaccharide export system permease LptF/LptG YPN_0651 PF00589 Phage integrase family YPN_0651 PF13356 Arm DNA-binding domain YPN_0653 PF08676 MutL C terminal dimerisation domain YPN_0653 PF01119 DNA mismatch repair protein, C-terminal domain YPN_0654 PF01695 IstB-like ATP binding protein YPN_0655 PF00665 Integrase core domain YPN_0655 PF02796 Helix-turn-helix domain of resolvase YPN_0657 PF03884 DNA gyrase inhibitor YacG YPN_0658 PF07072 Cell division protein YPN_0659 PF01121 Dephospho-CoA kinase YPN_0660 PF00478 IMP dehydrogenase / GMP reductase domain YPN_0661 PF00482 Type II secretion system (T2SS), protein F YPN_0662 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain YPN_0662 PF00437 Type II/IV secretion system protein YPN_0663 PF07963 Prokaryotic N-terminal methylation motif YPN_0664 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain YPN_0664 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain YPN_0665 PF01510 N-acetylmuramoyl-L-alanine amidase YPN_0666 PF17113 Regulatory signalling modulator protein AmpE YPN_0667 PF00324 Amino acid permease YPN_0668 PF07729 FCD domain YPN_0668 PF00392 Bacterial regulatory proteins, gntR family YPN_0669 PF00456 Transketolase, thiamine diphosphate binding domain YPN_0669 PF17831 Pyruvate dehydrogenase E1 component middle domain YPN_0670 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPN_0670 PF02817 e3 binding domain YPN_0670 PF00364 Biotin-requiring enzyme YPN_0671 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPN_0671 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPN_0672 PF01797 Transposase IS200 like YPN_0673 PF11791 Aconitate B N-terminal domain YPN_0673 PF00330 Aconitase family (aconitate hydratase) YPN_0673 PF06434 Aconitate hydratase 2 N-terminus YPN_0674 PF06062 Uncharacterised protein family (UPF0231) YPN_0675 PF00892 EamA-like transporter family YPN_0676 PF02675 S-adenosylmethionine decarboxylase YPN_0677 PF17284 Spermidine synthase tetramerisation domain YPN_0678 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) YPN_0679 PF07731 Multicopper oxidase YPN_0679 PF07732 Multicopper oxidase YPN_0679 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPN_0679 PF00394 Multicopper oxidase YPN_0680 PF00156 Phosphoribosyl transferase domain YPN_0681 PF00484 Carbonic anhydrase YPN_0682 PF00005 ABC transporter YPN_0683 PF01061 ABC-2 type transporter YPN_0685 PF01522 Polysaccharide deacetylase YPN_0686 PF02261 Aspartate decarboxylase YPN_0687 PF02569 Pantoate-beta-alanine ligase YPN_0688 PF02548 Ketopantoate hydroxymethyltransferase YPN_0689 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) YPN_0690 PF01743 Poly A polymerase head domain YPN_0690 PF12627 Probable RNA and SrmB- binding site of polymerase A YPN_0690 PF12626 Polymerase A arginine-rich C-terminus YPN_0691 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPN_0693 PF01258 Prokaryotic dksA/traR C4-type zinc finger YPN_0694 PF17746 SfsA N-terminal OB domain YPN_0694 PF03749 Sugar fermentation stimulation protein RE domain YPN_0695 PF02834 LigT like Phosphoesterase YPN_0696 PF00271 Helicase conserved C-terminal domain YPN_0696 PF00270 DEAD/DEAH box helicase YPN_0696 PF04408 Helicase associated domain (HA2) YPN_0696 PF08482 ATP-dependent helicase C-terminal YPN_0697 PF00905 Penicillin binding protein transpeptidase domain YPN_0697 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal YPN_0697 PF14814 Bifunctional transglycosylase second domain YPN_0697 PF00912 Transglycosylase YPN_0698 PF00005 ABC transporter YPN_0699 PF01497 Periplasmic binding protein YPN_0700 PF01032 FecCD transport family YPN_0701 PF00202 Aminotransferase class-III YPN_0702 PF00654 Voltage gated chloride channel YPN_0703 PF01521 Iron-sulphur cluster biosynthesis YPN_0705 PF03458 UPF0126 domain YPN_0706 PF01497 Periplasmic binding protein YPN_0707 PF01048 Phosphorylase superfamily YPN_0708 PF13286 Phosphohydrolase-associated domain YPN_0708 PF01966 HD domain YPN_0709 PF00595 PDZ domain YPN_0710 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPN_0710 PF00072 Response regulator receiver domain YPN_0710 PF01627 Hpt domain YPN_0710 PF00512 His Kinase A (phospho-acceptor) domain YPN_0710 PF00672 HAMP domain YPN_0710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_0712 PF05958 tRNA (Uracil-5-)-methyltransferase YPN_0712 PF01938 TRAM domain YPN_0713 PF13291 ACT domain YPN_0713 PF02824 TGS domain YPN_0713 PF04607 Region found in RelA / SpoT proteins YPN_0714 PF03819 MazG nucleotide pyrophosphohydrolase domain YPN_0715 PF00117 Glutamine amidotransferase class-I YPN_0715 PF06418 CTP synthase N-terminus YPN_0716 PF00113 Enolase, C-terminal TIM barrel domain YPN_0716 PF03952 Enolase, N-terminal domain YPN_0717 PF00080 Copper/zinc superoxide dismutase (SODC) YPN_0718 PF04055 Radical SAM superfamily YPN_0719 PF01242 6-pyruvoyl tetrahydropterin synthase YPN_0720 PF00175 Oxidoreductase NAD-binding domain YPN_0720 PF00258 Flavodoxin YPN_0720 PF00667 FAD binding domain YPN_0721 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPN_0721 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPN_0722 PF01507 Phosphoadenosine phosphosulfate reductase family YPN_0723 PF01507 Phosphoadenosine phosphosulfate reductase family YPN_0726 PF14824 Sirohaem biosynthesis protein central YPN_0726 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPN_0726 PF10414 Sirohaem synthase dimerisation region YPN_0727 PF01507 Phosphoadenosine phosphosulfate reductase family YPN_0728 PF00009 Elongation factor Tu GTP binding domain YPN_0730 PF12084 Protein of unknown function (DUF3561) YPN_0731 PF04977 Septum formation initiator YPN_0732 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YPN_0733 PF02542 YgbB family YPN_0734 PF01142 tRNA pseudouridine synthase D (TruD) YPN_0735 PF01975 Survival protein SurE YPN_0737 PF01476 LysM domain YPN_0737 PF01551 Peptidase family M23 YPN_0738 PF00140 Sigma-70 factor, region 1.2 YPN_0738 PF04542 Sigma-70 region 2 YPN_0738 PF04545 Sigma-70, region 4 YPN_0738 PF04539 Sigma-70 region 3 YPN_0739 PF01624 MutS domain I YPN_0739 PF05192 MutS domain III YPN_0739 PF05188 MutS domain II YPN_0739 PF05190 MutS family domain IV YPN_0739 PF00488 MutS domain V YPN_0741 PF02502 Ribose/Galactose Isomerase YPN_0742 PF08240 Alcohol dehydrogenase GroES-like domain YPN_0742 PF00107 Zinc-binding dehydrogenase YPN_0744 PF02733 Dak1 domain YPN_0745 PF02734 DAK2 domain YPN_0746 PF13936 Helix-turn-helix domain YPN_0746 PF04198 Putative sugar-binding domain YPN_0747 PF02040 Arsenical pump membrane protein YPN_0748 PF01022 Bacterial regulatory protein, arsR family YPN_0750 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPN_0751 PF00034 Cytochrome c YPN_0751 PF03150 Di-haem cytochrome c peroxidase YPN_0751 PF14376 Haem-binding domain YPN_0753 PF07715 TonB-dependent Receptor Plug Domain YPN_0753 PF00593 TonB dependent receptor YPN_0756 PF00557 Metallopeptidase family M24 YPN_0758 PF05683 Fumarase C-terminus YPN_0758 PF05681 Fumarate hydratase (Fumerase) YPN_0759 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPN_0759 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPN_0760 PF01261 Xylose isomerase-like TIM barrel YPN_0761 PF02653 Branched-chain amino acid transport system / permease component YPN_0762 PF02653 Branched-chain amino acid transport system / permease component YPN_0763 PF00005 ABC transporter YPN_0764 PF01797 Transposase IS200 like YPN_0766 PF00455 DeoR C terminal sensor domain YPN_0766 PF08220 DeoR-like helix-turn-helix domain YPN_0767 PF00596 Class II Aldolase and Adducin N-terminal domain YPN_0768 PF00384 Molybdopterin oxidoreductase YPN_0768 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPN_0768 PF01568 Molydopterin dinucleotide binding domain YPN_0769 PF13247 4Fe-4S dicluster domain YPN_0769 PF12800 4Fe-4S binding domain YPN_0770 PF04976 DMSO reductase anchor subunit (DmsC) YPN_0771 PF02613 Nitrate reductase delta subunit YPN_0772 PF01292 Prokaryotic cytochrome b561 YPN_0773 PF07361 Cytochrome b562 YPN_0774 PF00141 Peroxidase YPN_0777 PF00005 ABC transporter YPN_0778 PF02653 Branched-chain amino acid transport system / permease component YPN_0779 PF00456 Transketolase, thiamine diphosphate binding domain YPN_0780 PF02779 Transketolase, pyrimidine binding domain YPN_0780 PF02780 Transketolase, C-terminal domain YPN_0781 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPN_0781 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPN_0785 PF07690 Major Facilitator Superfamily YPN_0786 PF02464 Competence-damaged protein YPN_0787 PF00154 recA bacterial DNA recombination protein YPN_0788 PF02631 RecX family YPN_0789 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPN_0789 PF01411 tRNA synthetases class II (A) YPN_0789 PF02272 DHHA1 domain YPN_0790 PF02599 Global regulator protein family YPN_0791 PF13419 Haloacid dehalogenase-like hydrolase YPN_0792 PF09335 SNARE associated Golgi protein YPN_0793 PF04262 Glutamate-cysteine ligase YPN_0794 PF02664 S-Ribosylhomocysteinase (LuxS) YPN_0795 PF01367 5'-3' exonuclease, C-terminal SAM fold YPN_0795 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPN_0796 PF00665 Integrase core domain YPN_0796 PF02796 Helix-turn-helix domain of resolvase YPN_0797 PF01695 IstB-like ATP binding protein YPN_0799 PF03471 Transporter associated domain YPN_0799 PF00571 CBS domain YPN_0799 PF01595 Cyclin M transmembrane N-terminal domain YPN_0800 PF01578 Cytochrome C assembly protein YPN_0801 PF02881 SRP54-type protein, helical bundle domain YPN_0801 PF00448 SRP54-type protein, GTPase domain YPN_0801 PF02978 Signal peptide binding domain YPN_0803 PF00886 Ribosomal protein S16 YPN_0804 PF05239 PRC-barrel domain YPN_0804 PF01782 RimM N-terminal domain YPN_0805 PF01746 tRNA (Guanine-1)-methyltransferase YPN_0806 PF01245 Ribosomal protein L19 YPN_0807 PF01797 Transposase IS200 like YPN_0808 PF04338 Protein of unknown function, DUF481 YPN_0809 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPN_0810 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPN_0811 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPN_0812 PF04397 LytTr DNA-binding domain YPN_0812 PF00072 Response regulator receiver domain YPN_0813 PF00793 DAHP synthetase I family YPN_0814 PF01817 Chorismate mutase type II YPN_0814 PF02153 Prephenate dehydrogenase YPN_0815 PF01817 Chorismate mutase type II YPN_0815 PF00800 Prephenate dehydratase YPN_0816 PF01797 Transposase IS200 like YPN_0817 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YPN_0818 PF13525 Outer membrane lipoprotein YPN_0819 PF00849 RNA pseudouridylate synthase YPN_0819 PF01479 S4 domain YPN_0821 PF10431 C-terminal, D2-small domain, of ClpB protein YPN_0821 PF00004 ATPase family associated with various cellular activities (AAA) YPN_0821 PF02861 Clp amino terminal domain, pathogenicity island component YPN_0821 PF17871 AAA lid domain YPN_0821 PF07724 AAA domain (Cdc48 subfamily) YPN_0822 PF10043 Predicted periplasmic lipoprotein (DUF2279) YPN_0823 PF13091 PLD-like domain YPN_0824 PF13607 Succinyl-CoA ligase like flavodoxin domain YPN_0824 PF00583 Acetyltransferase (GNAT) family YPN_0824 PF13380 CoA binding domain YPN_0826 PF00085 Thioredoxin YPN_0827 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPN_0827 PF00588 SpoU rRNA Methylase family YPN_0828 PF07690 Major Facilitator Superfamily YPN_0829 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPN_0829 PF00529 HlyD membrane-fusion protein of T1SS YPN_0830 PF01047 MarR family YPN_0831 PF05437 Branched-chain amino acid transport protein (AzlD) YPN_0832 PF03591 AzlC protein YPN_0833 PF07690 Major Facilitator Superfamily YPN_0835 PF01425 Amidase YPN_0839 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPN_0840 PF00528 Binding-protein-dependent transport system inner membrane component YPN_0842 PF00005 ABC transporter YPN_0843 PF00266 Aminotransferase class-V YPN_0844 PF01546 Peptidase family M20/M25/M40 YPN_0844 PF07687 Peptidase dimerisation domain YPN_0845 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPN_0845 PF08479 POTRA domain, ShlB-type YPN_0846 PF05860 haemagglutination activity domain YPN_0848 PF18254 HMW1 domain 2 YPN_0848 PF18071 HMW1C N-terminal YPN_0850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YPN_0850 PF09317 Domain of unknown function (DUF1974) YPN_0850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPN_0851 PF13580 SIS domain YPN_0852 PF13230 Glutamine amidotransferases class-II YPN_0853 PF03734 L,D-transpeptidase catalytic domain YPN_0855 PF11973 NQRA C-terminal domain YPN_0855 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) YPN_0856 PF03116 NQR2, RnfD, RnfE family YPN_0857 PF04205 FMN-binding domain YPN_0858 PF02508 Rnf-Nqr subunit, membrane protein YPN_0859 PF02508 Rnf-Nqr subunit, membrane protein YPN_0860 PF00111 2Fe-2S iron-sulfur cluster binding domain YPN_0860 PF00175 Oxidoreductase NAD-binding domain YPN_0860 PF00970 Oxidoreductase FAD-binding domain YPN_0861 PF02424 ApbE family YPN_0863 PF03009 Glycerophosphoryl diester phosphodiesterase family YPN_0864 PF11798 IMS family HHH motif YPN_0864 PF11799 impB/mucB/samB family C-terminal domain YPN_0864 PF00817 impB/mucB/samB family YPN_0865 PF07687 Peptidase dimerisation domain YPN_0865 PF01546 Peptidase family M20/M25/M40 YPN_0866 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_0866 PF03466 LysR substrate binding domain YPN_0868 PF00156 Phosphoribosyl transferase domain YPN_0870 PF07417 Sigma factor-binding transcriptional regulator Crl YPN_0871 PF00696 Amino acid kinase family YPN_0871 PF01472 PUA domain YPN_0872 PF00171 Aldehyde dehydrogenase family YPN_0873 PF07317 Flagellar regulator YcgR YPN_0873 PF07238 PilZ domain YPN_0876 PF08241 Methyltransferase domain YPN_0878 PF01202 Shikimate kinase YPN_0879 PF06865 Pyrimidine/purine nucleoside phosphorylase YPN_0880 PF04381 Putative exonuclease, RdgC YPN_0881 PF00480 ROK family YPN_0882 PF13476 AAA domain YPN_0883 PF00149 Calcineurin-like phosphoesterase YPN_0883 PF12320 Type 5 capsule protein repressor C-terminal domain YPN_0884 PF00486 Transcriptional regulatory protein, C terminal YPN_0884 PF00072 Response regulator receiver domain YPN_0885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_0885 PF00512 His Kinase A (phospho-acceptor) domain YPN_0885 PF00989 PAS fold YPN_0885 PF11808 Phosphate regulon sensor protein PhoR YPN_0886 PF12849 PBP superfamily domain YPN_0887 PF05525 Branched-chain amino acid transport protein YPN_0888 PF00324 Amino acid permease YPN_0889 PF02903 Alpha amylase, N-terminal ig-like domain YPN_0889 PF00128 Alpha amylase, catalytic domain YPN_0893 PF10417 C-terminal domain of 1-Cys peroxiredoxin YPN_0893 PF00578 AhpC/TSA family YPN_0894 PF04336 Acyl carrier protein phosphodiesterase YPN_0895 PF02547 Queuosine biosynthesis protein YPN_0896 PF01702 Queuine tRNA-ribosyltransferase YPN_0897 PF02699 Preprotein translocase subunit YPN_0898 PF07549 SecD/SecF GG Motif YPN_0898 PF02355 Protein export membrane protein YPN_0898 PF13721 SecD export protein N-terminal TM region YPN_0899 PF07549 SecD/SecF GG Motif YPN_0899 PF02355 Protein export membrane protein YPN_0901 PF01797 Transposase IS200 like YPN_0904 PF03477 ATP cone domain YPN_0905 PF01872 RibD C-terminal domain YPN_0905 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPN_0906 PF00885 6,7-dimethyl-8-ribityllumazine synthase YPN_0907 PF01029 NusB family YPN_0908 PF00586 AIR synthase related protein, N-terminal domain YPN_0908 PF02769 AIR synthase related protein, C-terminal domain YPN_0909 PF04608 Phosphatidylglycerophosphatase A YPN_0911 PF13292 1-deoxy-D-xylulose-5-phosphate synthase YPN_0911 PF02779 Transketolase, pyrimidine binding domain YPN_0911 PF02780 Transketolase, C-terminal domain YPN_0912 PF00348 Polyprenyl synthetase YPN_0913 PF02609 Exonuclease VII small subunit YPN_0915 PF02926 THUMP domain YPN_0915 PF02568 Thiamine biosynthesis protein (ThiI) YPN_0916 PF01965 DJ-1/PfpI family YPN_0917 PF02558 Ketopantoate reductase PanE/ApbA YPN_0917 PF08546 Ketopantoate reductase PanE/ApbA C terminal YPN_0918 PF04461 Protein of unknown function (DUF520) YPN_0919 PF01695 IstB-like ATP binding protein YPN_0920 PF02796 Helix-turn-helix domain of resolvase YPN_0920 PF00665 Integrase core domain YPN_0921 PF04461 Protein of unknown function (DUF520) YPN_0922 PF07690 Major Facilitator Superfamily YPN_0923 PF01040 UbiA prenyltransferase family YPN_0924 PF03626 Prokaryotic Cytochrome C oxidase subunit IV YPN_0925 PF00510 Cytochrome c oxidase subunit III YPN_0926 PF00115 Cytochrome C and Quinol oxidase polypeptide I YPN_0927 PF06481 COX Aromatic Rich Motif YPN_0927 PF00116 Cytochrome C oxidase subunit II, periplasmic domain YPN_0928 PF03502 Nucleoside-specific channel-forming protein, Tsx YPN_0929 PF07690 Major Facilitator Superfamily YPN_0930 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPN_0930 PF03923 Uncharacterized lipoprotein YPN_0931 PF01722 BolA-like protein YPN_0932 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPN_0932 PF05698 Bacterial trigger factor protein (TF) C-terminus YPN_0932 PF05697 Bacterial trigger factor protein (TF) YPN_0933 PF00574 Clp protease YPN_0934 PF10431 C-terminal, D2-small domain, of ClpB protein YPN_0934 PF06689 ClpX C4-type zinc finger YPN_0934 PF07724 AAA domain (Cdc48 subfamily) YPN_0935 PF05362 Lon protease (S16) C-terminal proteolytic domain YPN_0935 PF00004 ATPase family associated with various cellular activities (AAA) YPN_0935 PF02190 ATP-dependent protease La (LON) substrate-binding domain YPN_0936 PF00216 Bacterial DNA-binding protein YPN_0937 PF13145 PPIC-type PPIASE domain YPN_0940 PF06508 Queuosine biosynthesis protein QueC YPN_0941 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPN_0941 PF12793 Sugar transport-related sRNA regulator N-term YPN_0943 PF00291 Pyridoxal-phosphate dependent enzyme YPN_0944 PF13404 AsnC-type helix-turn-helix domain YPN_0944 PF01037 Lrp/AsnC ligand binding domain YPN_0945 PF00005 ABC transporter YPN_0945 PF00664 ABC transporter transmembrane region YPN_0946 PF00005 ABC transporter YPN_0946 PF00664 ABC transporter transmembrane region YPN_0947 PF00543 Nitrogen regulatory protein P-II YPN_0948 PF00909 Ammonium Transporter Family YPN_0950 PF09619 Type III secretion system lipoprotein chaperone (YscW) YPN_0951 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPN_0952 PF05321 Haemolysin expression modulating protein YPN_0953 PF10757 Biofilm formation regulator YbaJ YPN_0955 PF00444 Ribosomal protein L36 YPN_0956 PF01197 Ribosomal protein L31 YPN_0957 PF00873 AcrB/AcrD/AcrF family YPN_0958 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPN_0958 PF00529 HlyD membrane-fusion protein of T1SS YPN_0959 PF00440 Bacterial regulatory proteins, tetR family YPN_0959 PF08361 MAATS-type transcriptional repressor, C-terminal region YPN_0960 PF02635 DsrE/DsrF-like family YPN_0961 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPN_0961 PF12795 Mechanosensitive ion channel porin domain YPN_0961 PF00924 Mechanosensitive ion channel YPN_0962 PF10689 Protein of unknown function (DUF2496) YPN_0964 PF04304 Protein of unknown function (DUF454) YPN_0965 PF00156 Phosphoribosyl transferase domain YPN_0966 PF12170 DNA polymerase III tau subunit V interacting with alpha YPN_0966 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding YPN_0966 PF12169 DNA polymerase III subunits gamma and tau domain III YPN_0967 PF02575 YbaB/EbfC DNA-binding family YPN_0968 PF02132 RecR protein YPN_0968 PF13662 Toprim domain YPN_0970 PF00183 Hsp90 protein YPN_0970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_0971 PF05191 Adenylate kinase, active site lid YPN_0972 PF00762 Ferrochelatase YPN_0973 PF00970 Oxidoreductase FAD-binding domain YPN_0973 PF00111 2Fe-2S iron-sulfur cluster binding domain YPN_0973 PF00175 Oxidoreductase NAD-binding domain YPN_0974 PF00483 Nucleotidyl transferase YPN_0975 PF16363 GDP-mannose 4,6 dehydratase YPN_0976 PF16363 GDP-mannose 4,6 dehydratase YPN_0977 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPN_0978 PF01370 NAD dependent epimerase/dehydratase family YPN_0984 PF00534 Glycosyl transferases group 1 YPN_0984 PF13439 Glycosyltransferase Family 4 YPN_0985 PF16363 GDP-mannose 4,6 dehydratase YPN_0986 PF16363 GDP-mannose 4,6 dehydratase YPN_0987 PF01370 NAD dependent epimerase/dehydratase family YPN_0988 PF00483 Nucleotidyl transferase YPN_0988 PF01050 Mannose-6-phosphate isomerase YPN_0989 PF00535 Glycosyl transferase family 2 YPN_0990 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPN_0990 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPN_0990 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPN_0990 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPN_0991 PF00872 Transposase, Mutator family YPN_0992 PF00872 Transposase, Mutator family YPN_0993 PF02706 Chain length determinant protein YPN_0994 PF00294 pfkB family carbohydrate kinase YPN_0995 PF00999 Sodium/hydrogen exchanger family YPN_0995 PF02254 TrkA-N domain YPN_0996 PF07690 Major Facilitator Superfamily YPN_0997 PF00149 Calcineurin-like phosphoesterase YPN_0997 PF02872 5'-nucleotidase, C-terminal domain YPN_0998 PF02872 5'-nucleotidase, C-terminal domain YPN_0998 PF00149 Calcineurin-like phosphoesterase YPN_0999 PF02872 5'-nucleotidase, C-terminal domain YPN_0999 PF00149 Calcineurin-like phosphoesterase YPN_1001 PF04073 Aminoacyl-tRNA editing domain YPN_1002 PF01963 TraB family YPN_1003 PF00403 Heavy-metal-associated domain YPN_1004 PF13411 MerR HTH family regulatory protein YPN_1005 PF01957 NfeD-like C-terminal, partner-binding YPN_1006 PF16200 C-terminal region of band_7 YPN_1006 PF01145 SPFH domain / Band 7 family YPN_1007 PF00085 Thioredoxin YPN_1008 PF00106 short chain dehydrogenase YPN_1009 PF13472 GDSL-like Lipase/Acylhydrolase family YPN_1010 PF00005 ABC transporter YPN_1012 PF01797 Transposase IS200 like YPN_1013 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain YPN_1013 PF02222 ATP-grasp domain YPN_1014 PF00731 AIR carboxylase YPN_1015 PF00149 Calcineurin-like phosphoesterase YPN_1016 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPN_1017 PF09190 DALR domain YPN_1017 PF01406 tRNA synthetases class I (C) catalytic domain YPN_1018 PF01797 Transposase IS200 like YPN_1020 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YPN_1020 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YPN_1023 PF00589 Phage integrase family YPN_1024 PF01066 CDP-alcohol phosphatidyltransferase YPN_1026 PF01553 Acyltransferase YPN_1027 PF12147 Putative methyltransferase YPN_1027 PF12146 Serine aminopeptidase, S33 YPN_1028 PF00782 Dual specificity phosphatase, catalytic domain YPN_1031 PF01695 IstB-like ATP binding protein YPN_1032 PF02796 Helix-turn-helix domain of resolvase YPN_1032 PF00665 Integrase core domain YPN_1033 PF03466 LysR substrate binding domain YPN_1033 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_1034 PF00248 Aldo/keto reductase family YPN_1035 PF00248 Aldo/keto reductase family YPN_1042 PF00872 Transposase, Mutator family YPN_1043 PF08007 Cupin superfamily protein YPN_1045 PF03797 Autotransporter beta-domain YPN_1045 PF03212 Pertactin YPN_1045 PF13018 Extended Signal Peptide of Type V secretion system YPN_1045 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPN_1048 PF05638 Type VI secretion system effector, Hcp YPN_1054 PF13693 Winged helix-turn-helix DNA-binding YPN_1055 PF00905 Penicillin binding protein transpeptidase domain YPN_1055 PF00912 Transglycosylase YPN_1055 PF06832 Penicillin-Binding Protein C-terminus Family YPN_1056 PF01797 Transposase IS200 like YPN_1057 PF01835 MG2 domain YPN_1057 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain YPN_1057 PF11974 Bacterial alpha-2-macroglobulin MG3 domain YPN_1057 PF17962 Bacterial macroglobulin domain 6 YPN_1057 PF07703 Alpha-2-macroglobulin bait region domain YPN_1057 PF00207 Alpha-2-macroglobulin family YPN_1057 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain YPN_1061 PF00171 Aldehyde dehydrogenase family YPN_1062 PF00205 Thiamine pyrophosphate enzyme, central domain YPN_1062 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPN_1062 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPN_1063 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPN_1063 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPN_1064 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPN_1064 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPN_1065 PF13407 Periplasmic binding protein domain YPN_1066 PF00005 ABC transporter YPN_1067 PF02653 Branched-chain amino acid transport system / permease component YPN_1068 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPN_1068 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPN_1069 PF00294 pfkB family carbohydrate kinase YPN_1070 PF01261 Xylose isomerase-like TIM barrel YPN_1071 PF04962 KduI/IolB family YPN_1073 PF00664 ABC transporter transmembrane region YPN_1073 PF00005 ABC transporter YPN_1078 PF00196 Bacterial regulatory proteins, luxR family YPN_1079 PF00313 'Cold-shock' DNA-binding domain YPN_1081 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPN_1082 PF02416 mttA/Hcf106 family YPN_1083 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family YPN_1083 PF04055 Radical SAM superfamily YPN_1084 PF03099 Biotin/lipoate A/B protein ligase family YPN_1085 PF04359 Protein of unknown function (DUF493) YPN_1086 PF07943 Penicillin-binding protein 5, C-terminal domain YPN_1086 PF00768 D-alanyl-D-alanine carboxypeptidase YPN_1087 PF03330 Lytic transglycolase YPN_1087 PF05036 Sporulation related domain YPN_1088 PF01098 Cell cycle protein YPN_1089 PF03717 Penicillin-binding Protein dimerisation domain YPN_1089 PF00905 Penicillin binding protein transpeptidase domain YPN_1090 PF02590 Predicted SPOUT methyltransferase YPN_1092 PF01467 Cytidylyltransferase-like YPN_1093 PF06144 DNA polymerase III, delta subunit YPN_1093 PF14840 Processivity clamp loader gamma complex DNA pol III C-term YPN_1094 PF04390 Lipopolysaccharide-assembly YPN_1095 PF08264 Anticodon-binding domain of tRNA YPN_1095 PF13603 Leucyl-tRNA synthetase, Domain 2 YPN_1095 PF00133 tRNA synthetases class I (I, L, M and V) YPN_1096 PF07295 Zinc-ribbon containing domain YPN_1097 PF00005 ABC transporter YPN_1098 PF00528 Binding-protein-dependent transport system inner membrane component YPN_1099 PF00528 Binding-protein-dependent transport system inner membrane component YPN_1100 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPN_1101 PF00795 Carbon-nitrogen hydrolase YPN_1102 PF00571 CBS domain YPN_1102 PF03471 Transporter associated domain YPN_1104 PF02130 Uncharacterized protein family UPF0054 YPN_1105 PF02562 PhoH-like protein YPN_1106 PF04055 Radical SAM superfamily YPN_1106 PF00919 Uncharacterized protein family UPF0004 YPN_1106 PF01938 TRAM domain YPN_1107 PF01494 FAD binding domain YPN_1109 PF00733 Asparagine synthase YPN_1109 PF13537 Glutamine amidotransferase domain YPN_1110 PF13344 Haloacid dehalogenase-like hydrolase YPN_1111 PF00480 ROK family YPN_1111 PF01047 MarR family YPN_1112 PF01979 Amidohydrolase family YPN_1113 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase YPN_1114 PF02378 Phosphotransferase system, EIIC YPN_1114 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPN_1114 PF00367 phosphotransferase system, EIIB YPN_1115 PF01797 Transposase IS200 like YPN_1116 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPN_1116 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain YPN_1117 PF03573 outer membrane porin, OprD family YPN_1118 PF00728 Glycosyl hydrolase family 20, catalytic domain YPN_1118 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain YPN_1118 PF03173 Putative carbohydrate binding domain YPN_1118 PF02838 Glycosyl hydrolase family 20, domain 2 YPN_1119 PF03173 Putative carbohydrate binding domain YPN_1119 PF02838 Glycosyl hydrolase family 20, domain 2 YPN_1119 PF00728 Glycosyl hydrolase family 20, catalytic domain YPN_1119 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain YPN_1120 PF01475 Ferric uptake regulator family YPN_1121 PF00258 Flavodoxin YPN_1122 PF01402 Ribbon-helix-helix protein, copG family YPN_1123 PF12697 Alpha/beta hydrolase family YPN_1124 PF00589 Phage integrase family YPN_1124 PF13356 Arm DNA-binding domain YPN_1125 PF01527 Transposase YPN_1126 PF00589 Phage integrase family YPN_1126 PF13356 Arm DNA-binding domain YPN_1127 PF01695 IstB-like ATP binding protein YPN_1128 PF01695 IstB-like ATP binding protein YPN_1129 PF00665 Integrase core domain YPN_1129 PF02796 Helix-turn-helix domain of resolvase YPN_1131 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPN_1132 PF00528 Binding-protein-dependent transport system inner membrane component YPN_1133 PF00571 CBS domain YPN_1133 PF00005 ABC transporter YPN_1134 PF00268 Ribonucleotide reductase, small chain YPN_1135 PF08343 Ribonucleotide reductase N-terminal YPN_1135 PF00317 Ribonucleotide reductase, all-alpha domain YPN_1135 PF02867 Ribonucleotide reductase, barrel domain YPN_1136 PF07972 NrdI Flavodoxin like YPN_1138 PF06392 Acid shock protein repeat YPN_1139 PF09400 Protein of unknown function (DUF2002) YPN_1140 PF06711 Protein of unknown function (DUF1198) YPN_1142 PF00313 'Cold-shock' DNA-binding domain YPN_1143 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPN_1144 PF00528 Binding-protein-dependent transport system inner membrane component YPN_1145 PF12911 N-terminal TM domain of oligopeptide transport permease C YPN_1145 PF00528 Binding-protein-dependent transport system inner membrane component YPN_1146 PF00005 ABC transporter YPN_1147 PF00005 ABC transporter YPN_1149 PF00547 Urease, gamma subunit YPN_1150 PF00699 Urease beta subunit YPN_1151 PF01979 Amidohydrolase family YPN_1151 PF00449 Urease alpha-subunit, N-terminal domain YPN_1152 PF05194 UreE urease accessory protein, C-terminal domain YPN_1152 PF02814 UreE urease accessory protein, N-terminal domain YPN_1153 PF01730 UreF YPN_1154 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPN_1155 PF01774 UreD urease accessory protein YPN_1156 PF01774 UreD urease accessory protein YPN_1157 PF03253 Urea transporter YPN_1158 PF03824 High-affinity nickel-transport protein YPN_1159 PF06411 HdeA/HdeB family YPN_1160 PF02254 TrkA-N domain YPN_1160 PF07885 Ion channel YPN_1161 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPN_1162 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPN_1164 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPN_1165 PF02378 Phosphotransferase system, EIIC YPN_1166 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit YPN_1167 PF12833 Helix-turn-helix domain YPN_1167 PF07883 Cupin domain YPN_1168 PF04794 YdjC-like protein YPN_1170 PF17206 SeqA protein N-terminal domain YPN_1170 PF03925 SeqA protein C-terminal domain YPN_1171 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPN_1171 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPN_1171 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPN_1171 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPN_1175 PF00072 Response regulator receiver domain YPN_1175 PF00486 Transcriptional regulatory protein, C terminal YPN_1176 PF00512 His Kinase A (phospho-acceptor) domain YPN_1176 PF02702 Osmosensitive K+ channel His kinase sensor domain YPN_1176 PF13492 GAF domain YPN_1176 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_1176 PF13493 Domain of unknown function (DUF4118) YPN_1177 PF02669 K+-transporting ATPase, c chain YPN_1179 PF03814 Potassium-transporting ATPase A subunit YPN_1181 PF10725 Protein of unknown function (DUF2517) YPN_1182 PF08349 Protein of unknown function (DUF1722) YPN_1183 PF00875 DNA photolyase YPN_1183 PF03441 FAD binding domain of DNA photolyase YPN_1184 PF02112 cAMP phosphodiesterases class-II YPN_1185 PF01784 NIF3 (NGG1p interacting factor 3) YPN_1186 PF02682 Carboxyltransferase domain, subdomain C and D YPN_1187 PF02626 Carboxyltransferase domain, subdomain A and B YPN_1188 PF03746 LamB/YcsF family YPN_1191 PF01470 Pyroglutamyl peptidase YPN_1192 PF03167 Uracil DNA glycosylase superfamily YPN_1193 PF01228 Glycine radical YPN_1195 PF12796 Ankyrin repeats (3 copies) YPN_1196 PF00271 Helicase conserved C-terminal domain YPN_1196 PF00270 DEAD/DEAH box helicase YPN_1197 PF05175 Methyltransferase small domain YPN_1198 PF00890 FAD binding domain YPN_1198 PF02910 Fumarate reductase flavoprotein C-term YPN_1199 PF04542 Sigma-70 region 2 YPN_1199 PF08281 Sigma-70, region 4 YPN_1200 PF03872 Anti sigma-E protein RseA, N-terminal domain YPN_1200 PF03873 Anti sigma-E protein RseA, C-terminal domain YPN_1201 PF17188 MucB/RseB C-terminal domain YPN_1201 PF03888 MucB/RseB N-terminal domain YPN_1204 PF06421 GTP-binding protein LepA C-terminus YPN_1204 PF00009 Elongation factor Tu GTP binding domain YPN_1204 PF00679 Elongation factor G C-terminus YPN_1204 PF03144 Elongation factor Tu domain 2 YPN_1205 PF10502 Signal peptidase, peptidase S26 YPN_1206 PF14622 Ribonuclease-III-like YPN_1206 PF00035 Double-stranded RNA binding motif YPN_1207 PF07650 KH domain YPN_1207 PF01926 50S ribosome-binding GTPase YPN_1208 PF02565 Recombination protein O C terminal YPN_1208 PF11967 Recombination protein O N terminal YPN_1209 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ YPN_1210 PF01648 4'-phosphopantetheinyl transferase superfamily YPN_1211 PF01797 Transposase IS200 like YPN_1212 PF12838 4Fe-4S dicluster domain YPN_1213 PF01418 Helix-turn-helix domain, rpiR family YPN_1213 PF01380 SIS domain YPN_1214 PF01380 SIS domain YPN_1216 PF14437 MafB19-like deaminase YPN_1217 PF01464 Transglycosylase SLT domain YPN_1217 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPN_1218 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal YPN_1218 PF02769 AIR synthase related protein, C-terminal domain YPN_1218 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain YPN_1222 PF00512 His Kinase A (phospho-acceptor) domain YPN_1222 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_1223 PF13942 YfhG lipoprotein YPN_1224 PF00072 Response regulator receiver domain YPN_1224 PF00158 Sigma-54 interaction domain YPN_1225 PF02540 NAD synthase YPN_1225 PF00795 Carbon-nitrogen hydrolase YPN_1226 PF00543 Nitrogen regulatory protein P-II YPN_1227 PF14502 Helix-turn-helix domain YPN_1227 PF14503 YhfZ C-terminal domain YPN_1228 PF01695 IstB-like ATP binding protein YPN_1229 PF02796 Helix-turn-helix domain of resolvase YPN_1229 PF00665 Integrase core domain YPN_1230 PF14502 Helix-turn-helix domain YPN_1230 PF14503 YhfZ C-terminal domain YPN_1231 PF00175 Oxidoreductase NAD-binding domain YPN_1231 PF00970 Oxidoreductase FAD-binding domain YPN_1231 PF00042 Globin YPN_1232 PF00464 Serine hydroxymethyltransferase YPN_1233 PF13505 Outer membrane protein beta-barrel domain YPN_1234 PF12832 MFS_1 like family YPN_1235 PF00874 PRD domain YPN_1236 PF06226 Protein of unknown function (DUF1007) YPN_1237 PF03824 High-affinity nickel-transport protein YPN_1238 PF00459 Inositol monophosphatase family YPN_1239 PF00588 SpoU rRNA Methylase family YPN_1240 PF02082 Transcriptional regulator YPN_1241 PF00266 Aminotransferase class-V YPN_1242 PF01592 NifU-like N terminal domain YPN_1243 PF01521 Iron-sulphur cluster biosynthesis YPN_1244 PF00226 DnaJ domain YPN_1244 PF07743 HSCB C-terminal oligomerisation domain YPN_1245 PF00012 Hsp70 protein YPN_1246 PF00111 2Fe-2S iron-sulfur cluster binding domain YPN_1247 PF04384 Iron-sulphur cluster assembly YPN_1248 PF12404 Peptidase YPN_1248 PF00883 Cytosol aminopeptidase family, catalytic domain YPN_1249 PF14581 SseB protein C-terminal domain YPN_1249 PF07179 SseB protein N-terminal domain YPN_1251 PF03212 Pertactin YPN_1251 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPN_1251 PF03797 Autotransporter beta-domain YPN_1252 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPN_1252 PF03797 Autotransporter beta-domain YPN_1252 PF03212 Pertactin YPN_1255 PF00334 Nucleoside diphosphate kinase YPN_1256 PF04055 Radical SAM superfamily YPN_1258 PF13464 Domain of unknown function (DUF4115) YPN_1259 PF04551 GcpE protein YPN_1260 PF03129 Anticodon binding domain YPN_1260 PF13393 Histidyl-tRNA synthetase YPN_1261 PF09976 Tetratricopeptide repeat-like domain YPN_1262 PF13360 PQQ-like domain YPN_1263 PF01926 50S ribosome-binding GTPase YPN_1263 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YPN_1265 PF07191 zinc-ribbons YPN_1266 PF02601 Exonuclease VII, large subunit YPN_1266 PF13742 OB-fold nucleic acid binding domain YPN_1267 PF00478 IMP dehydrogenase / GMP reductase domain YPN_1267 PF00571 CBS domain YPN_1268 PF02540 NAD synthase YPN_1268 PF00958 GMP synthase C terminal domain YPN_1268 PF00117 Glutamine amidotransferase class-I YPN_1269 PF01797 Transposase IS200 like YPN_1270 PF05638 Type VI secretion system effector, Hcp YPN_1275 PF00872 Transposase, Mutator family YPN_1278 PF08543 Phosphomethylpyrimidine kinase YPN_1282 PF00781 Diacylglycerol kinase catalytic domain YPN_1284 PF07411 Domain of unknown function (DUF1508) YPN_1285 PF00486 Transcriptional regulatory protein, C terminal YPN_1285 PF00072 Response regulator receiver domain YPN_1286 PF00672 HAMP domain YPN_1286 PF00512 His Kinase A (phospho-acceptor) domain YPN_1286 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_1287 PF00672 HAMP domain YPN_1287 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_1287 PF00512 His Kinase A (phospho-acceptor) domain YPN_1288 PF07690 Major Facilitator Superfamily YPN_1289 PF00873 AcrB/AcrD/AcrF family YPN_1290 PF00873 AcrB/AcrD/AcrF family YPN_1291 PF13533 Biotin-lipoyl like YPN_1292 PF00005 ABC transporter YPN_1292 PF08402 TOBE domain YPN_1293 PF00155 Aminotransferase class I and II YPN_1293 PF00392 Bacterial regulatory proteins, gntR family YPN_1294 PF00202 Aminotransferase class-III YPN_1296 PF00528 Binding-protein-dependent transport system inner membrane component YPN_1297 PF00528 Binding-protein-dependent transport system inner membrane component YPN_1298 PF00012 Hsp70 protein YPN_1299 PF00571 CBS domain YPN_1299 PF01769 Divalent cation transporter YPN_1299 PF03448 MgtE intracellular N domain YPN_1300 PF02541 Ppx/GppA phosphatase family YPN_1301 PF13089 Polyphosphate kinase N-terminal domain YPN_1301 PF17941 Polyphosphate kinase C-terminal domain 1 YPN_1301 PF13090 Polyphosphate kinase C-terminal domain 2 YPN_1301 PF02503 Polyphosphate kinase middle domain YPN_1303 PF00528 Binding-protein-dependent transport system inner membrane component YPN_1304 PF00528 Binding-protein-dependent transport system inner membrane component YPN_1305 PF00005 ABC transporter YPN_1308 PF13302 Acetyltransferase (GNAT) domain YPN_1309 PF00551 Formyl transferase YPN_1310 PF02769 AIR synthase related protein, C-terminal domain YPN_1310 PF00586 AIR synthase related protein, N-terminal domain YPN_1312 PF01797 Transposase IS200 like YPN_1313 PF00308 Bacterial dnaA protein YPN_1314 PF03960 ArsC family YPN_1315 PF01435 Peptidase family M48 YPN_1315 PF07720 Tetratricopeptide repeat YPN_1316 PF01594 AI-2E family transporter YPN_1321 PF00578 AhpC/TSA family YPN_1322 PF01842 ACT domain YPN_1323 PF00701 Dihydrodipicolinate synthetase family YPN_1324 PF06804 NlpB/DapX lipoprotein YPN_1325 PF01797 Transposase IS200 like YPN_1326 PF01259 SAICAR synthetase YPN_1327 PF04228 Putative neutral zinc metallopeptidase YPN_1328 PF04284 Protein of unknown function (DUF441) YPN_1329 PF13718 GNAT acetyltransferase 2 YPN_1329 PF08351 Domain of unknown function (DUF1726) YPN_1329 PF05127 Helicase YPN_1329 PF17176 tRNA-binding domain YPN_1330 PF13980 Uncharacterised protein family (UPF0370) YPN_1331 PF02557 D-alanyl-D-alanine carboxypeptidase YPN_1332 PF07687 Peptidase dimerisation domain YPN_1332 PF01546 Peptidase family M20/M25/M40 YPN_1333 PF03960 ArsC family YPN_1336 PF00528 Binding-protein-dependent transport system inner membrane component YPN_1337 PF08402 TOBE domain YPN_1337 PF00005 ABC transporter YPN_1338 PF00884 Sulfatase YPN_1339 PF13186 Iron-sulfur cluster-binding domain YPN_1339 PF04055 Radical SAM superfamily YPN_1340 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPN_1342 PF00873 AcrB/AcrD/AcrF family YPN_1344 PF00196 Bacterial regulatory proteins, luxR family YPN_1344 PF00072 Response regulator receiver domain YPN_1345 PF12800 4Fe-4S binding domain YPN_1345 PF13187 4Fe-4S dicluster domain YPN_1345 PF00037 4Fe-4S binding domain YPN_1346 PF03927 NapD protein YPN_1347 PF00384 Molybdopterin oxidoreductase YPN_1347 PF01568 Molydopterin dinucleotide binding domain YPN_1347 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPN_1347 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPN_1348 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) YPN_1349 PF03264 NapC/NirT cytochrome c family, N-terminal region YPN_1350 PF00293 NUDIX domain YPN_1351 PF01515 Phosphate acetyl/butaryl transferase YPN_1351 PF03949 Malic enzyme, NAD binding domain YPN_1351 PF00390 Malic enzyme, N-terminal domain YPN_1352 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 YPN_1353 PF01218 Coproporphyrinogen III oxidase YPN_1354 PF00583 Acetyltransferase (GNAT) family YPN_1357 PF13018 Extended Signal Peptide of Type V secretion system YPN_1357 PF03212 Pertactin YPN_1357 PF03797 Autotransporter beta-domain YPN_1357 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPN_1358 PF04076 Bacterial OB fold (BOF) protein YPN_1359 PF06572 Protein of unknown function (DUF1131) YPN_1360 PF04261 Dyp-type peroxidase family YPN_1361 PF00701 Dihydrodipicolinate synthetase family YPN_1362 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase YPN_1363 PF12468 Type III secretion system leucine rich repeat protein YPN_1364 PF00480 ROK family YPN_1365 PF04074 YhcH/YjgK/YiaL YPN_1366 PF01380 SIS domain YPN_1366 PF01418 Helix-turn-helix domain, rpiR family YPN_1367 PF07690 Major Facilitator Superfamily YPN_1369 PF00528 Binding-protein-dependent transport system inner membrane component YPN_1370 PF00528 Binding-protein-dependent transport system inner membrane component YPN_1371 PF00005 ABC transporter YPN_1372 PF00291 Pyridoxal-phosphate dependent enzyme YPN_1374 PF00072 Response regulator receiver domain YPN_1374 PF00486 Transcriptional regulatory protein, C terminal YPN_1375 PF00672 HAMP domain YPN_1375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_1375 PF00512 His Kinase A (phospho-acceptor) domain YPN_1377 PF00155 Aminotransferase class I and II YPN_1379 PF00557 Metallopeptidase family M24 YPN_1379 PF05195 Aminopeptidase P, N-terminal domain YPN_1380 PF00474 Sodium:solute symporter family YPN_1381 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPN_1381 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPN_1382 PF12704 MacB-like periplasmic core domain YPN_1382 PF02687 FtsX-like permease family YPN_1382 PF00005 ABC transporter YPN_1383 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPN_1384 PF00072 Response regulator receiver domain YPN_1384 PF00486 Transcriptional regulatory protein, C terminal YPN_1385 PF16527 Two-component sensor protein CpxA, periplasmic domain YPN_1385 PF00512 His Kinase A (phospho-acceptor) domain YPN_1385 PF00672 HAMP domain YPN_1385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_1387 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPN_1388 PF05524 PEP-utilising enzyme, N-terminal YPN_1388 PF02896 PEP-utilising enzyme, TIM barrel domain YPN_1388 PF00391 PEP-utilising enzyme, mobile domain YPN_1389 PF00381 PTS HPr component phosphorylation site YPN_1390 PF00291 Pyridoxal-phosphate dependent enzyme YPN_1392 PF04354 ZipA, C-terminal FtsZ-binding domain YPN_1393 PF03120 NAD-dependent DNA ligase OB-fold domain YPN_1393 PF03119 NAD-dependent DNA ligase C4 zinc finger domain YPN_1393 PF12826 Helix-hairpin-helix motif YPN_1393 PF01653 NAD-dependent DNA ligase adenylation domain YPN_1393 PF00533 BRCA1 C Terminus (BRCT) domain YPN_1394 PF12843 Putative quorum-sensing-regulated virulence factor YPN_1397 PF01797 Transposase IS200 like YPN_1398 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPN_1399 PF07670 Nucleoside recognition YPN_1399 PF07662 Na+ dependent nucleoside transporter C-terminus YPN_1399 PF01773 Na+ dependent nucleoside transporter N-terminus YPN_1400 PF01566 Natural resistance-associated macrophage protein YPN_1402 PF00248 Aldo/keto reductase family YPN_1403 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_1403 PF03466 LysR substrate binding domain YPN_1405 PF02685 Glucokinase YPN_1406 PF07350 Protein of unknown function (DUF1479) YPN_1407 PF00155 Aminotransferase class I and II YPN_1408 PF01292 Prokaryotic cytochrome b561 YPN_1410 PF03783 Curli production assembly/transport component CsgG YPN_1412 PF05643 Putative bacterial lipoprotein (DUF799) YPN_1414 PF02613 Nitrate reductase delta subunit YPN_1415 PF04976 DMSO reductase anchor subunit (DmsC) YPN_1416 PF12800 4Fe-4S binding domain YPN_1416 PF13247 4Fe-4S dicluster domain YPN_1417 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPN_1417 PF00384 Molybdopterin oxidoreductase YPN_1417 PF01568 Molydopterin dinucleotide binding domain YPN_1419 PF05638 Type VI secretion system effector, Hcp YPN_1421 PF00005 ABC transporter YPN_1422 PF00528 Binding-protein-dependent transport system inner membrane component YPN_1424 PF13406 Transglycosylase SLT domain YPN_1434 PF00004 ATPase family associated with various cellular activities (AAA) YPN_1434 PF10431 C-terminal, D2-small domain, of ClpB protein YPN_1434 PF17871 AAA lid domain YPN_1434 PF07724 AAA domain (Cdc48 subfamily) YPN_1435 PF16970 Type-1 fimbrial protein, A YPN_1436 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPN_1436 PF02753 Pili assembly chaperone PapD, C-terminal domain YPN_1437 PF13954 PapC N-terminal domain YPN_1437 PF00577 Outer membrane usher protein YPN_1437 PF13953 PapC C-terminal domain YPN_1438 PF00872 Transposase, Mutator family YPN_1439 PF00872 Transposase, Mutator family YPN_1440 PF13953 PapC C-terminal domain YPN_1440 PF00577 Outer membrane usher protein YPN_1440 PF13954 PapC N-terminal domain YPN_1448 PF00665 Integrase core domain YPN_1448 PF02796 Helix-turn-helix domain of resolvase YPN_1449 PF01695 IstB-like ATP binding protein YPN_1450 PF00267 Gram-negative porin YPN_1452 PF01979 Amidohydrolase family YPN_1453 PF07702 UTRA domain YPN_1453 PF00392 Bacterial regulatory proteins, gntR family YPN_1454 PF01979 Amidohydrolase family YPN_1455 PF05962 HutD YPN_1457 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPN_1457 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPN_1458 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPN_1458 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPN_1459 PF01370 NAD dependent epimerase/dehydratase family YPN_1468 PF00872 Transposase, Mutator family YPN_1472 PF08242 Methyltransferase domain YPN_1480 PF00512 His Kinase A (phospho-acceptor) domain YPN_1480 PF00672 HAMP domain YPN_1480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_1481 PF00486 Transcriptional regulatory protein, C terminal YPN_1481 PF00072 Response regulator receiver domain YPN_1482 PF02129 X-Pro dipeptidyl-peptidase (S15 family) YPN_1491 PF01926 50S ribosome-binding GTPase YPN_1491 PF06071 Protein of unknown function (DUF933) YPN_1492 PF01195 Peptidyl-tRNA hydrolase YPN_1493 PF10762 Protein of unknown function (DUF2583) YPN_1494 PF14572 Phosphoribosyl synthetase-associated domain YPN_1494 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase YPN_1496 PF00288 GHMP kinases N terminal domain YPN_1496 PF08544 GHMP kinases C terminal YPN_1497 PF03550 Outer membrane lipoprotein LolB YPN_1498 PF01488 Shikimate / quinate 5-dehydrogenase YPN_1498 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain YPN_1498 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain YPN_1499 PF03462 PCRF domain YPN_1499 PF00472 RF-1 domain YPN_1500 PF13847 Methyltransferase domain YPN_1500 PF17827 PrmC N-terminal domain YPN_1501 PF04247 Invasion gene expression up-regulator, SirB YPN_1502 PF13369 Transglutaminase-like superfamily YPN_1503 PF00793 DAHP synthetase I family YPN_1504 PF01740 STAS domain YPN_1504 PF00916 Sulfate permease family YPN_1505 PF03009 Glycerophosphoryl diester phosphodiesterase family YPN_1507 PF00528 Binding-protein-dependent transport system inner membrane component YPN_1508 PF00528 Binding-protein-dependent transport system inner membrane component YPN_1509 PF00005 ABC transporter YPN_1509 PF08402 TOBE domain YPN_1511 PF08402 TOBE domain YPN_1511 PF00005 ABC transporter YPN_1512 PF03009 Glycerophosphoryl diester phosphodiesterase family YPN_1513 PF01325 Iron dependent repressor, N-terminal DNA binding domain YPN_1513 PF00480 ROK family YPN_1514 PF02811 PHP domain YPN_1515 PF02613 Nitrate reductase delta subunit YPN_1516 PF07273 Protein of unknown function (DUF1439) YPN_1517 PF07690 Major Facilitator Superfamily YPN_1518 PF13302 Acetyltransferase (GNAT) domain YPN_1519 PF04337 Protein of unknown function, DUF480 YPN_1520 PF03023 Lipid II flippase MurJ YPN_1521 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPN_1521 PF17287 POTRA domain YPN_1521 PF08479 POTRA domain, ShlB-type YPN_1522 PF13332 Hemagglutinin repeat YPN_1522 PF05860 haemagglutination activity domain YPN_1523 PF03485 Arginyl tRNA synthetase N terminal domain YPN_1523 PF00750 tRNA synthetases class I (R) YPN_1523 PF05746 DALR anticodon binding domain YPN_1524 PF06185 YecM protein YPN_1525 PF03932 CutC family YPN_1526 PF08003 Protein of unknown function (DUF1698) YPN_1527 PF13649 Methyltransferase domain YPN_1528 PF01124 MAPEG family YPN_1529 PF01904 Protein of unknown function DUF72 YPN_1530 PF01336 OB-fold nucleic acid binding domain YPN_1530 PF00152 tRNA synthetases class II (D, K and N) YPN_1530 PF02938 GAD domain YPN_1531 PF00293 NUDIX domain YPN_1532 PF01709 Transcriptional regulator YPN_1533 PF02075 Crossover junction endodeoxyribonuclease RuvC YPN_1534 PF07499 RuvA, C-terminal domain YPN_1534 PF01330 RuvA N terminal domain YPN_1535 PF05491 RuvB C-terminal winged helix domain YPN_1535 PF05496 Holliday junction DNA helicase RuvB P-loop domain YPN_1535 PF17864 RuvB AAA lid domain YPN_1536 PF00950 ABC 3 transport family YPN_1537 PF00005 ABC transporter YPN_1538 PF01297 Zinc-uptake complex component A periplasmic YPN_1539 PF08525 Opacity-associated protein A N-terminal motif YPN_1539 PF01551 Peptidase family M23 YPN_1539 PF01476 LysM domain YPN_1540 PF03279 Bacterial lipid A biosynthesis acyltransferase YPN_1541 PF02887 Pyruvate kinase, alpha/beta domain YPN_1541 PF00224 Pyruvate kinase, barrel domain YPN_1542 PF01380 SIS domain YPN_1542 PF01418 Helix-turn-helix domain, rpiR family YPN_1543 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain YPN_1543 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain YPN_1544 PF01081 KDPG and KHG aldolase YPN_1545 PF00893 Small Multidrug Resistance protein YPN_1546 PF00893 Small Multidrug Resistance protein YPN_1547 PF01042 Endoribonuclease L-PSP YPN_1548 PF13307 Helicase C-terminal domain YPN_1548 PF04851 Type III restriction enzyme, res subunit YPN_1549 PF00814 Glycoprotease family YPN_1550 PF03843 Outer membrane lipoprotein Slp family YPN_1551 PF00501 AMP-binding enzyme YPN_1551 PF13193 AMP-binding enzyme C-terminal domain YPN_1552 PF00570 HRDC domain YPN_1552 PF01612 3'-5' exonuclease YPN_1553 PF03776 Septum formation topological specificity factor MinE YPN_1554 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain YPN_1555 PF03775 Septum formation inhibitor MinC, C-terminal domain YPN_1555 PF05209 Septum formation inhibitor MinC, N-terminal domain YPN_1556 PF05166 YcgL domain YPN_1557 PF13406 Transglycosylase SLT domain YPN_1558 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPN_1559 PF03692 Putative zinc- or iron-chelating domain YPN_1560 PF12167 Arm DNA-binding domain YPN_1560 PF00589 Phage integrase family YPN_1561 PF00665 Integrase core domain YPN_1561 PF02796 Helix-turn-helix domain of resolvase YPN_1562 PF01695 IstB-like ATP binding protein YPN_1564 PF05772 NinB protein YPN_1566 PF06530 Phage antitermination protein Q YPN_1576 PF00872 Transposase, Mutator family YPN_1592 PF01797 Transposase IS200 like YPN_1603 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YPN_1605 PF00872 Transposase, Mutator family YPN_1607 PF00266 Aminotransferase class-V YPN_1610 PF02600 Disulfide bond formation protein DsbB YPN_1611 PF06450 Bacterial Na+/H+ antiporter B (NhaB) YPN_1612 PF00392 Bacterial regulatory proteins, gntR family YPN_1612 PF07840 FadR C-terminal domain YPN_1613 PF04293 SpoVR like protein YPN_1614 PF01266 FAD dependent oxidoreductase YPN_1615 PF07690 Major Facilitator Superfamily YPN_1616 PF05726 Pirin C-terminal cupin domain YPN_1616 PF02678 Pirin YPN_1617 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_1617 PF03466 LysR substrate binding domain YPN_1619 PF04285 Protein of unknown function (DUF444) YPN_1620 PF06798 PrkA serine protein kinase C-terminal domain YPN_1620 PF08298 PrkA AAA domain YPN_1621 PF06629 MltA-interacting protein MipA YPN_1622 PF01263 Aldose 1-epimerase YPN_1623 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPN_1623 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPN_1624 PF01641 SelR domain YPN_1625 PF07023 Protein of unknown function (DUF1315) YPN_1626 PF00857 Isochorismatase family YPN_1627 PF00710 Asparaginase, N-terminal YPN_1627 PF17763 Glutaminase/Asparaginase C-terminal domain YPN_1628 PF01343 Peptidase family S49 YPN_1629 PF00881 Nitroreductase family YPN_1630 PF02769 AIR synthase related protein, C-terminal domain YPN_1630 PF00586 AIR synthase related protein, N-terminal domain YPN_1631 PF01131 DNA topoisomerase YPN_1631 PF01751 Toprim domain YPN_1632 PF07383 Protein of unknown function (DUF1496) YPN_1633 PF00293 NUDIX domain YPN_1634 PF03372 Endonuclease/Exonuclease/phosphatase family YPN_1635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_1635 PF03466 LysR substrate binding domain YPN_1637 PF00872 Transposase, Mutator family YPN_1638 PF01842 ACT domain YPN_1638 PF00551 Formyl transferase YPN_1639 PF02810 SEC-C motif YPN_1640 PF00072 Response regulator receiver domain YPN_1641 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPN_1641 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPN_1641 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPN_1642 PF00816 H-NS histone family YPN_1643 PF00265 Thymidine kinase YPN_1644 PF01695 IstB-like ATP binding protein YPN_1645 PF00665 Integrase core domain YPN_1645 PF02796 Helix-turn-helix domain of resolvase YPN_1646 PF00465 Iron-containing alcohol dehydrogenase YPN_1646 PF00171 Aldehyde dehydrogenase family YPN_1647 PF01914 MarC family integral membrane protein YPN_1648 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPN_1649 PF00528 Binding-protein-dependent transport system inner membrane component YPN_1650 PF00528 Binding-protein-dependent transport system inner membrane component YPN_1650 PF12911 N-terminal TM domain of oligopeptide transport permease C YPN_1651 PF00005 ABC transporter YPN_1651 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPN_1652 PF00005 ABC transporter YPN_1652 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPN_1654 PF04269 Protein of unknown function, DUF440 YPN_1655 PF13091 PLD-like domain YPN_1655 PF13396 Phospholipase_D-nuclease N-terminal YPN_1656 PF13505 Outer membrane protein beta-barrel domain YPN_1660 PF03795 YCII-related domain YPN_1661 PF03544 Gram-negative bacterial TonB protein C-terminal YPN_1662 PF00872 Transposase, Mutator family YPN_1663 PF03061 Thioesterase superfamily YPN_1664 PF04279 Intracellular septation protein A YPN_1669 PF03922 OmpW family YPN_1672 PF00290 Tryptophan synthase alpha chain YPN_1673 PF00291 Pyridoxal-phosphate dependent enzyme YPN_1674 PF00218 Indole-3-glycerol phosphate synthase YPN_1674 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase YPN_1675 PF02885 Glycosyl transferase family, helical bundle domain YPN_1675 PF00591 Glycosyl transferase family, a/b domain YPN_1676 PF00117 Glutamine amidotransferase class-I YPN_1677 PF00425 chorismate binding enzyme YPN_1677 PF04715 Anthranilate synthase component I, N terminal region YPN_1678 PF02811 PHP domain YPN_1679 PF01300 Telomere recombination YPN_1680 PF00849 RNA pseudouridylate synthase YPN_1680 PF01479 S4 domain YPN_1681 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YPN_1682 PF00106 short chain dehydrogenase YPN_1683 PF08496 Peptidase family S49 N-terminal YPN_1683 PF01343 Peptidase family S49 YPN_1684 PF10692 Protein of unknown function (DUF2498) YPN_1686 PF08272 Topoisomerase I zinc-ribbon-like YPN_1686 PF01396 Topoisomerase DNA binding C4 zinc finger YPN_1686 PF01751 Toprim domain YPN_1686 PF01131 DNA topoisomerase YPN_1687 PF03466 LysR substrate binding domain YPN_1687 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_1689 PF00694 Aconitase C-terminal domain YPN_1689 PF00330 Aconitase family (aconitate hydratase) YPN_1690 PF00925 GTP cyclohydrolase II YPN_1692 PF01569 PAP2 superfamily YPN_1693 PF06305 Lipopolysaccharide assembly protein A domain YPN_1694 PF18073 Rubredoxin metal binding domain YPN_1696 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family YPN_1697 PF01253 Translation initiation factor SUI1 YPN_1698 PF05433 Glycine zipper 2TM domain YPN_1699 PF00596 Class II Aldolase and Adducin N-terminal domain YPN_1701 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPN_1702 PF04328 Selenoprotein, putative YPN_1703 PF02554 Carbon starvation protein CstA YPN_1703 PF13722 5TM C-terminal transporter carbon starvation CstA YPN_1704 PF08206 Ribonuclease B OB domain YPN_1704 PF00575 S1 RNA binding domain YPN_1704 PF17876 Cold shock domain YPN_1704 PF00773 RNB domain YPN_1705 PF07690 Major Facilitator Superfamily YPN_1706 PF01370 NAD dependent epimerase/dehydratase family YPN_1707 PF10576 Iron-sulfur binding domain of endonuclease III YPN_1707 PF00633 Helix-hairpin-helix motif YPN_1707 PF00730 HhH-GPD superfamily base excision DNA repair protein YPN_1708 PF02508 Rnf-Nqr subunit, membrane protein YPN_1709 PF04205 FMN-binding domain YPN_1710 PF03116 NQR2, RnfD, RnfE family YPN_1711 PF12833 Helix-turn-helix domain YPN_1711 PF06445 GyrI-like small molecule binding domain YPN_1712 PF13375 RnfC Barrel sandwich hybrid domain YPN_1712 PF10531 SLBB domain YPN_1712 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPN_1712 PF13237 4Fe-4S dicluster domain YPN_1713 PF04060 Putative Fe-S cluster YPN_1714 PF02508 Rnf-Nqr subunit, membrane protein YPN_1715 PF10754 Protein of unknown function (DUF2569) YPN_1717 PF03412 Peptidase C39 family YPN_1717 PF00005 ABC transporter YPN_1717 PF00664 ABC transporter transmembrane region YPN_1718 PF03412 Peptidase C39 family YPN_1718 PF00005 ABC transporter YPN_1718 PF00664 ABC transporter transmembrane region YPN_1719 PF13533 Biotin-lipoyl like YPN_1721 PF03412 Peptidase C39 family YPN_1721 PF00005 ABC transporter YPN_1721 PF00664 ABC transporter transmembrane region YPN_1722 PF02610 L-arabinose isomerase YPN_1722 PF11762 L-arabinose isomerase C-terminal domain YPN_1723 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPN_1724 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPN_1725 PF00005 ABC transporter YPN_1726 PF02653 Branched-chain amino acid transport system / permease component YPN_1727 PF02311 AraC-like ligand binding domain YPN_1727 PF12833 Helix-turn-helix domain YPN_1728 PF02311 AraC-like ligand binding domain YPN_1728 PF12833 Helix-turn-helix domain YPN_1729 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPN_1729 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPN_1730 PF13593 SBF-like CPA transporter family (DUF4137) YPN_1733 PF00872 Transposase, Mutator family YPN_1734 PF06097 Bacterial protein of unknown function (DUF945) YPN_1735 PF01238 Phosphomannose isomerase type I YPN_1736 PF00206 Lyase YPN_1736 PF10415 Fumarase C C-terminus YPN_1737 PF05472 DNA replication terminus site-binding protein (Ter protein) YPN_1738 PF07690 Major Facilitator Superfamily YPN_1739 PF03466 LysR substrate binding domain YPN_1739 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_1740 PF00480 ROK family YPN_1742 PF00654 Voltage gated chloride channel YPN_1743 PF00356 Bacterial regulatory proteins, lacI family YPN_1745 PF13407 Periplasmic binding protein domain YPN_1746 PF09084 NMT1/THI5 like YPN_1747 PF00528 Binding-protein-dependent transport system inner membrane component YPN_1748 PF00005 ABC transporter YPN_1749 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus YPN_1749 PF01048 Phosphorylase superfamily YPN_1755 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPN_1755 PF00205 Thiamine pyrophosphate enzyme, central domain YPN_1755 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPN_1756 PF01842 ACT domain YPN_1757 PF13419 Haloacid dehalogenase-like hydrolase YPN_1759 PF00245 Alkaline phosphatase YPN_1760 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPN_1760 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPN_1761 PF00027 Cyclic nucleotide-binding domain YPN_1761 PF13545 Crp-like helix-turn-helix domain YPN_1762 PF00582 Universal stress protein family YPN_1763 PF02233 NAD(P) transhydrogenase beta subunit YPN_1764 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch YPN_1764 PF05222 Alanine dehydrogenase/PNT, N-terminal domain YPN_1764 PF01262 Alanine dehydrogenase/PNT, C-terminal domain YPN_1765 PF07338 Protein of unknown function (DUF1471) YPN_1766 PF13520 Amino acid permease YPN_1768 PF00486 Transcriptional regulatory protein, C terminal YPN_1768 PF00072 Response regulator receiver domain YPN_1769 PF00512 His Kinase A (phospho-acceptor) domain YPN_1769 PF00672 HAMP domain YPN_1769 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_1771 PF00872 Transposase, Mutator family YPN_1772 PF02074 Carboxypeptidase Taq (M32) metallopeptidase YPN_1774 PF14431 YwqJ-like deaminase YPN_1774 PF18807 Tripartite Tc toxins repeat YPN_1777 PF01292 Prokaryotic cytochrome b561 YPN_1779 PF00089 Trypsin YPN_1781 PF00270 DEAD/DEAH box helicase YPN_1781 PF11898 Domain of unknown function (DUF3418) YPN_1781 PF04408 Helicase associated domain (HA2) YPN_1781 PF00271 Helicase conserved C-terminal domain YPN_1781 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold YPN_1782 PF02525 Flavodoxin-like fold YPN_1783 PF04198 Putative sugar-binding domain YPN_1783 PF00325 Bacterial regulatory proteins, crp family YPN_1784 PF08125 Mannitol dehydrogenase C-terminal domain YPN_1784 PF01232 Mannitol dehydrogenase Rossmann domain YPN_1785 PF07027 Protein of unknown function (DUF1318) YPN_1786 PF13617 YnbE-like lipoprotein YPN_1787 PF11739 Dicarboxylate transport YPN_1788 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPN_1788 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPN_1789 PF03724 META domain YPN_1790 PF03891 Domain of unknown function (DUF333) YPN_1791 PF02308 MgtC family YPN_1792 PF00893 Small Multidrug Resistance protein YPN_1793 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase YPN_1793 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II YPN_1793 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg YPN_1793 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPN_1793 PF10371 Domain of unknown function YPN_1794 PF01171 PP-loop family YPN_1795 PF07859 alpha/beta hydrolase fold YPN_1795 PF13472 GDSL-like Lipase/Acylhydrolase family YPN_1798 PF01544 CorA-like Mg2+ transporter protein YPN_1799 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPN_1800 PF00246 Zinc carboxypeptidase YPN_1801 PF13378 Enolase C-terminal domain-like YPN_1801 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPN_1802 PF08534 Redoxin YPN_1803 PF01797 Transposase IS200 like YPN_1804 PF18024 Helix-turn-helix domain YPN_1804 PF00158 Sigma-54 interaction domain YPN_1807 PF05128 Domain of unknown function (DUF697) YPN_1808 PF04317 YcjX-like family, DUF463 YPN_1810 PF04024 PspC domain YPN_1811 PF06667 Phage shock protein B YPN_1812 PF04012 PspA/IM30 family YPN_1813 PF00158 Sigma-54 interaction domain YPN_1813 PF02954 Bacterial regulatory protein, Fis family YPN_1815 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPN_1816 PF00528 Binding-protein-dependent transport system inner membrane component YPN_1817 PF12911 N-terminal TM domain of oligopeptide transport permease C YPN_1817 PF00528 Binding-protein-dependent transport system inner membrane component YPN_1818 PF00005 ABC transporter YPN_1818 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPN_1819 PF00005 ABC transporter YPN_1821 PF00854 POT family YPN_1822 PF04893 Yip1 domain YPN_1823 PF11656 YjbD family (DUF3811) YPN_1824 PF02798 Glutathione S-transferase, N-terminal domain YPN_1824 PF00043 Glutathione S-transferase, C-terminal domain YPN_1825 PF08543 Phosphomethylpyrimidine kinase YPN_1826 PF00579 tRNA synthetases class I (W and Y) YPN_1826 PF01479 S4 domain YPN_1827 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region YPN_1827 PF01243 Pyridoxamine 5'-phosphate oxidase YPN_1828 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme YPN_1829 PF03702 Anhydro-N-acetylmuramic acid kinase YPN_1830 PF05433 Glycine zipper 2TM domain YPN_1831 PF01047 MarR family YPN_1832 PF08019 Phosphoethanolamine transferase EptA/EptB YPN_1832 PF00884 Sulfatase YPN_1833 PF16925 Tetracyclin repressor-like, C-terminal domain YPN_1833 PF00440 Bacterial regulatory proteins, tetR family YPN_1834 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPN_1835 PF18807 Tripartite Tc toxins repeat YPN_1835 PF14431 YwqJ-like deaminase YPN_1836 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPN_1837 PF00929 Exonuclease YPN_1838 PF00462 Glutaredoxin YPN_1839 PF00877 NlpC/P60 family YPN_1840 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPN_1840 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPN_1841 PF00356 Bacterial regulatory proteins, lacI family YPN_1842 PF03466 LysR substrate binding domain YPN_1842 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_1843 PF07690 Major Facilitator Superfamily YPN_1845 PF00677 Lumazine binding domain YPN_1846 PF01554 MatE YPN_1847 PF00224 Pyruvate kinase, barrel domain YPN_1847 PF02887 Pyruvate kinase, alpha/beta domain YPN_1848 PF04728 Lipoprotein leucine-zipper YPN_1849 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPN_1849 PF01367 5'-3' exonuclease, C-terminal SAM fold YPN_1850 PF02796 Helix-turn-helix domain of resolvase YPN_1850 PF00665 Integrase core domain YPN_1851 PF01695 IstB-like ATP binding protein YPN_1853 PF17969 L,D-transpeptidase C-terminal domain YPN_1853 PF01476 LysM domain YPN_1853 PF03734 L,D-transpeptidase catalytic domain YPN_1854 PF02657 Fe-S metabolism associated domain YPN_1855 PF00266 Aminotransferase class-V YPN_1856 PF01458 Uncharacterized protein family (UPF0051) YPN_1857 PF00005 ABC transporter YPN_1858 PF01458 Uncharacterized protein family (UPF0051) YPN_1859 PF01521 Iron-sulphur cluster biosynthesis YPN_1860 PF03061 Thioesterase superfamily YPN_1861 PF13183 4Fe-4S dicluster domain YPN_1861 PF02913 FAD linked oxidases, C-terminal domain YPN_1861 PF01565 FAD binding domain YPN_1862 PF01594 AI-2E family transporter YPN_1863 PF00391 PEP-utilising enzyme, mobile domain YPN_1863 PF02896 PEP-utilising enzyme, TIM barrel domain YPN_1863 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain YPN_1864 PF03618 Kinase/pyrophosphorylase YPN_1865 PF00793 DAHP synthetase I family YPN_1866 PF02696 Uncharacterized ACR, YdiU/UPF0061 family YPN_1867 PF02696 Uncharacterized ACR, YdiU/UPF0061 family YPN_1868 PF10437 Bacterial lipoate protein ligase C-terminus YPN_1868 PF03099 Biotin/lipoate A/B protein ligase family YPN_1869 PF00877 NlpC/P60 family YPN_1871 PF00892 EamA-like transporter family YPN_1872 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase YPN_1873 PF01522 Polysaccharide deacetylase YPN_1874 PF00551 Formyl transferase YPN_1874 PF01370 NAD dependent epimerase/dehydratase family YPN_1874 PF02911 Formyl transferase, C-terminal domain YPN_1875 PF00535 Glycosyl transferase family 2 YPN_1876 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPN_1877 PF00005 ABC transporter YPN_1878 PF00255 Glutathione peroxidase YPN_1879 PF01032 FecCD transport family YPN_1881 PF00216 Bacterial DNA-binding protein YPN_1882 PF01588 Putative tRNA binding domain YPN_1882 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain YPN_1882 PF03484 tRNA synthetase B5 domain YPN_1882 PF03483 B3/4 domain YPN_1882 PF03147 Ferredoxin-fold anticodon binding domain YPN_1883 PF01409 tRNA synthetases class II core domain (F) YPN_1883 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain YPN_1885 PF00453 Ribosomal protein L20 YPN_1886 PF01632 Ribosomal protein L35 YPN_1887 PF00707 Translation initiation factor IF-3, C-terminal domain YPN_1887 PF05198 Translation initiation factor IF-3, N-terminal domain YPN_1888 PF02824 TGS domain YPN_1888 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPN_1888 PF03129 Anticodon binding domain YPN_1888 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPN_1889 PF13619 KTSC domain YPN_1891 PF01914 MarC family integral membrane protein YPN_1892 PF01464 Transglycosylase SLT domain YPN_1893 PF01297 Zinc-uptake complex component A periplasmic YPN_1894 PF00005 ABC transporter YPN_1895 PF00950 ABC 3 transport family YPN_1896 PF00950 ABC 3 transport family YPN_1899 PF14002 YniB-like protein YPN_1900 PF13419 Haloacid dehalogenase-like hydrolase YPN_1901 PF00872 Transposase, Mutator family YPN_1902 PF00872 Transposase, Mutator family YPN_1904 PF07883 Cupin domain YPN_1905 PF04962 KduI/IolB family YPN_1907 PF06917 Periplasmic pectate lyase YPN_1908 PF00528 Binding-protein-dependent transport system inner membrane component YPN_1909 PF00528 Binding-protein-dependent transport system inner membrane component YPN_1910 PF00005 ABC transporter YPN_1910 PF17912 MalK OB fold domain YPN_1910 PF03459 TOBE domain YPN_1911 PF01547 Bacterial extracellular solute-binding protein YPN_1912 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPN_1913 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPN_1915 PF01510 N-acetylmuramoyl-L-alanine amidase YPN_1916 PF09339 IclR helix-turn-helix domain YPN_1916 PF01614 Bacterial transcriptional regulator YPN_1917 PF14583 Oligogalacturonate lyase YPN_1918 PF07690 Major Facilitator Superfamily YPN_1919 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPN_1919 PF02753 Pili assembly chaperone PapD, C-terminal domain YPN_1921 PF00577 Outer membrane usher protein YPN_1921 PF13953 PapC C-terminal domain YPN_1921 PF13954 PapC N-terminal domain YPN_1922 PF02753 Pili assembly chaperone PapD, C-terminal domain YPN_1922 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPN_1923 PF00419 Fimbrial protein YPN_1924 PF01435 Peptidase family M48 YPN_1925 PF17804 Tail specific protease N-terminal domain YPN_1925 PF03572 Peptidase family S41 YPN_1925 PF00595 PDZ domain YPN_1925 PF11818 C-terminal domain of tail specific protease (DUF3340) YPN_1926 PF17516 ProQ C-terminal domain YPN_1926 PF04352 ProQ/FINO family YPN_1927 PF13185 GAF domain YPN_1928 PF04403 Paraquat-inducible protein A YPN_1929 PF02470 MlaD protein YPN_1933 PF02753 Pili assembly chaperone PapD, C-terminal domain YPN_1933 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPN_1936 PF07351 Protein of unknown function (DUF1480) YPN_1939 PF00665 Integrase core domain YPN_1939 PF02796 Helix-turn-helix domain of resolvase YPN_1940 PF01695 IstB-like ATP binding protein YPN_1944 PF00842 Alanine racemase, C-terminal domain YPN_1944 PF01168 Alanine racemase, N-terminal domain YPN_1946 PF13018 Extended Signal Peptide of Type V secretion system YPN_1946 PF05662 Coiled stalk of trimeric autotransporter adhesin YPN_1946 PF05658 Head domain of trimeric autotransporter adhesin YPN_1946 PF03895 YadA-like membrane anchor domain YPN_1947 PF05658 Head domain of trimeric autotransporter adhesin YPN_1947 PF13018 Extended Signal Peptide of Type V secretion system YPN_1947 PF03895 YadA-like membrane anchor domain YPN_1947 PF05662 Coiled stalk of trimeric autotransporter adhesin YPN_1948 PF01510 N-acetylmuramoyl-L-alanine amidase YPN_1950 PF04344 Chemotaxis phosphatase, CheZ YPN_1951 PF00072 Response regulator receiver domain YPN_1952 PF00072 Response regulator receiver domain YPN_1952 PF01339 CheB methylesterase YPN_1953 PF01739 CheR methyltransferase, SAM binding domain YPN_1953 PF03705 CheR methyltransferase, all-alpha domain YPN_1954 PF00672 HAMP domain YPN_1954 PF02203 Tar ligand binding domain homologue YPN_1954 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPN_1955 PF00672 HAMP domain YPN_1955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPN_1955 PF02203 Tar ligand binding domain homologue YPN_1958 PF12951 Passenger-associated-transport-repeat YPN_1959 PF08348 YheO-like PAS domain YPN_1959 PF13309 HTH domain YPN_1961 PF01042 Endoribonuclease L-PSP YPN_1962 PF07690 Major Facilitator Superfamily YPN_1963 PF01584 CheW-like domain YPN_1964 PF01584 CheW-like domain YPN_1964 PF09078 CheY binding YPN_1964 PF02895 Signal transducing histidine kinase, homodimeric domain YPN_1964 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_1964 PF01627 Hpt domain YPN_1965 PF13677 Membrane MotB of proton-channel complex MotA/MotB YPN_1965 PF00691 OmpA family YPN_1966 PF01618 MotA/TolQ/ExbB proton channel family YPN_1967 PF05280 Flagellar transcriptional activator (FlhC) YPN_1968 PF05247 Flagellar transcriptional activator (FlhD) YPN_1969 PF00690 Cation transporter/ATPase, N-terminus YPN_1969 PF00689 Cation transporting ATPase, C-terminus YPN_1970 PF02308 MgtC family YPN_1971 PF00672 HAMP domain YPN_1971 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPN_1971 PF02203 Tar ligand binding domain homologue YPN_1972 PF02203 Tar ligand binding domain homologue YPN_1972 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPN_1972 PF00672 HAMP domain YPN_1973 PF10781 Dextransucrase DSRB YPN_1974 PF00313 'Cold-shock' DNA-binding domain YPN_1975 PF00703 Glycosyl hydrolases family 2 YPN_1975 PF02836 Glycosyl hydrolases family 2, TIM barrel domain YPN_1975 PF02837 Glycosyl hydrolases family 2, sugar binding domain YPN_1975 PF16353 Domain of unknown function(DUF4981) YPN_1975 PF02929 Beta galactosidase small chain YPN_1976 PF08659 KR domain YPN_1976 PF00698 Acyl transferase domain YPN_1976 PF08240 Alcohol dehydrogenase GroES-like domain YPN_1976 PF02801 Beta-ketoacyl synthase, C-terminal domain YPN_1976 PF00107 Zinc-binding dehydrogenase YPN_1976 PF00109 Beta-ketoacyl synthase, N-terminal domain YPN_1976 PF14765 Polyketide synthase dehydratase YPN_1976 PF00550 Phosphopantetheine attachment site YPN_1976 PF16197 Ketoacyl-synthetase C-terminal extension YPN_1977 PF10777 Inner membrane protein YlaC YPN_1979 PF13404 AsnC-type helix-turn-helix domain YPN_1979 PF01037 Lrp/AsnC ligand binding domain YPN_1981 PF14001 YdfZ protein YPN_1982 PF00328 Histidine phosphatase superfamily (branch 2) YPN_1985 PF01638 HxlR-like helix-turn-helix YPN_1986 PF05368 NmrA-like family YPN_1987 PF08447 PAS fold YPN_1987 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPN_1989 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPN_1989 PF00356 Bacterial regulatory proteins, lacI family YPN_1990 PF00180 Isocitrate/isopropylmalate dehydrogenase YPN_1991 PF00849 RNA pseudouridylate synthase YPN_1992 PF00293 NUDIX domain YPN_1994 PF04356 Protein of unknown function (DUF489) YPN_1995 PF08328 Adenylosuccinate lyase C-terminal YPN_1995 PF00206 Lyase YPN_1997 PF00072 Response regulator receiver domain YPN_1997 PF00486 Transcriptional regulatory protein, C terminal YPN_1998 PF08918 PhoQ Sensor YPN_1998 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_1999 PF08007 Cupin superfamily protein YPN_2000 PF07687 Peptidase dimerisation domain YPN_2000 PF01546 Peptidase family M20/M25/M40 YPN_2001 PF02146 Sir2 family YPN_2002 PF00480 ROK family YPN_2003 PF00480 ROK family YPN_2004 PF02687 FtsX-like permease family YPN_2004 PF12704 MacB-like periplasmic core domain YPN_2005 PF00005 ABC transporter YPN_2006 PF02687 FtsX-like permease family YPN_2006 PF12704 MacB-like periplasmic core domain YPN_2007 PF00271 Helicase conserved C-terminal domain YPN_2007 PF03461 TRCF domain YPN_2007 PF02559 CarD-like/TRCF domain YPN_2007 PF00270 DEAD/DEAH box helicase YPN_2007 PF17757 UvrB interaction domain YPN_2008 PF05433 Glycine zipper 2TM domain YPN_2009 PF00872 Transposase, Mutator family YPN_2012 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPN_2013 PF05728 Uncharacterised protein family (UPF0227) YPN_2014 PF00933 Glycosyl hydrolase family 3 N terminal domain YPN_2015 PF01636 Phosphotransferase enzyme family YPN_2016 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPN_2016 PF13036 Peptidoglycan-synthase activator LpoB YPN_2017 PF07233 Protein of unknown function (DUF1425) YPN_2018 PF01230 HIT domain YPN_2019 PF08501 Shikimate dehydrogenase substrate binding domain YPN_2021 PF02378 Phosphotransferase system, EIIC YPN_2021 PF00367 phosphotransferase system, EIIB YPN_2022 PF01026 TatD related DNase YPN_2023 PF09115 DNA polymerase III, delta subunit, C terminal YPN_2024 PF02223 Thymidylate kinase YPN_2025 PF02618 YceG-like family YPN_2026 PF01063 Amino-transferase class IV YPN_2028 PF02801 Beta-ketoacyl synthase, C-terminal domain YPN_2028 PF00109 Beta-ketoacyl synthase, N-terminal domain YPN_2029 PF00550 Phosphopantetheine attachment site YPN_2031 PF00698 Acyl transferase domain YPN_2032 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPN_2032 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPN_2033 PF02504 Fatty acid synthesis protein YPN_2034 PF01783 Ribosomal L32p protein family YPN_2035 PF02620 Large ribosomal RNA subunit accumulation protein YceD YPN_2036 PF02545 Maf-like protein YPN_2037 PF00849 RNA pseudouridylate synthase YPN_2037 PF01479 S4 domain YPN_2038 PF10150 Ribonuclease E/G family YPN_2038 PF12111 Polyribonucleotide phosphorylase C terminal YPN_2038 PF00575 S1 RNA binding domain YPN_2039 PF00872 Transposase, Mutator family YPN_2040 PF13991 BssS protein family YPN_2041 PF06183 DinI-like family YPN_2042 PF01979 Amidohydrolase family YPN_2043 PF03992 Antibiotic biosynthesis monooxygenase YPN_2044 PF00872 Transposase, Mutator family YPN_2045 PF01266 FAD dependent oxidoreductase YPN_2046 PF00196 Bacterial regulatory proteins, luxR family YPN_2047 PF01594 AI-2E family transporter YPN_2052 PF00765 Autoinducer synthase YPN_2053 PF03472 Autoinducer binding domain YPN_2053 PF00196 Bacterial regulatory proteins, luxR family YPN_2054 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_2054 PF03466 LysR substrate binding domain YPN_2055 PF00083 Sugar (and other) transporter YPN_2057 PF00248 Aldo/keto reductase family YPN_2058 PF09618 CRISPR-associated protein (Cas_Csy4) YPN_2059 PF09615 CRISPR-associated protein (Cas_Csy3) YPN_2060 PF09614 CRISPR-associated protein (Cas_Csy2) YPN_2061 PF09611 CRISPR-associated protein (Cas_Csy1) YPN_2063 PF01867 CRISPR associated protein Cas1 YPN_2064 PF00924 Mechanosensitive ion channel YPN_2068 PF04041 beta-1,4-mannooligosaccharide phosphorylase YPN_2069 PF00528 Binding-protein-dependent transport system inner membrane component YPN_2070 PF00528 Binding-protein-dependent transport system inner membrane component YPN_2072 PF00356 Bacterial regulatory proteins, lacI family YPN_2073 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPN_2073 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPN_2073 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPN_2073 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPN_2074 PF00005 ABC transporter YPN_2074 PF17912 MalK OB fold domain YPN_2077 PF04829 Pre-toxin domain with VENN motif YPN_2077 PF05860 haemagglutination activity domain YPN_2077 PF15526 Novel toxin 21 YPN_2077 PF05594 Haemagluttinin repeat YPN_2077 PF13332 Hemagglutinin repeat YPN_2081 PF13018 Extended Signal Peptide of Type V secretion system YPN_2081 PF04829 Pre-toxin domain with VENN motif YPN_2081 PF05860 haemagglutination activity domain YPN_2081 PF13332 Hemagglutinin repeat YPN_2084 PF13018 Extended Signal Peptide of Type V secretion system YPN_2084 PF13332 Hemagglutinin repeat YPN_2084 PF05860 haemagglutination activity domain YPN_2084 PF04829 Pre-toxin domain with VENN motif YPN_2085 PF08479 POTRA domain, ShlB-type YPN_2085 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPN_2085 PF17287 POTRA domain YPN_2086 PF00175 Oxidoreductase NAD-binding domain YPN_2086 PF00970 Oxidoreductase FAD-binding domain YPN_2086 PF00111 2Fe-2S iron-sulfur cluster binding domain YPN_2087 PF00355 Rieske [2Fe-2S] domain YPN_2087 PF00848 Ring hydroxylating alpha subunit (catalytic domain) YPN_2088 PF00848 Ring hydroxylating alpha subunit (catalytic domain) YPN_2088 PF00355 Rieske [2Fe-2S] domain YPN_2089 PF02028 BCCT, betaine/carnitine/choline family transporter YPN_2090 PF00180 Isocitrate/isopropylmalate dehydrogenase YPN_2091 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_2091 PF03466 LysR substrate binding domain YPN_2092 PF00356 Bacterial regulatory proteins, lacI family YPN_2093 PF02653 Branched-chain amino acid transport system / permease component YPN_2094 PF00005 ABC transporter YPN_2095 PF13407 Periplasmic binding protein domain YPN_2096 PF00107 Zinc-binding dehydrogenase YPN_2096 PF08240 Alcohol dehydrogenase GroES-like domain YPN_2100 PF13505 Outer membrane protein beta-barrel domain YPN_2102 PF00892 EamA-like transporter family YPN_2104 PF13649 Methyltransferase domain YPN_2105 PF00210 Ferritin-like domain YPN_2107 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPN_2108 PF00528 Binding-protein-dependent transport system inner membrane component YPN_2109 PF00005 ABC transporter YPN_2110 PF08447 PAS fold YPN_2110 PF13426 PAS domain YPN_2110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPN_2111 PF02796 Helix-turn-helix domain of resolvase YPN_2111 PF00665 Integrase core domain YPN_2112 PF01695 IstB-like ATP binding protein YPN_2114 PF05971 RNA methyltransferase YPN_2115 PF07338 Protein of unknown function (DUF1471) YPN_2117 PF02885 Glycosyl transferase family, helical bundle domain YPN_2118 PF00501 AMP-binding enzyme YPN_2118 PF13193 AMP-binding enzyme C-terminal domain YPN_2119 PF13378 Enolase C-terminal domain-like YPN_2120 PF00378 Enoyl-CoA hydratase/isomerase YPN_2121 PF12697 Alpha/beta hydrolase family YPN_2122 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPN_2122 PF16582 Middle domain of thiamine pyrophosphate YPN_2122 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPN_2123 PF00425 chorismate binding enzyme YPN_2125 PF05957 Bacterial protein of unknown function (DUF883) YPN_2128 PF00920 Dehydratase family YPN_2129 PF03928 Haem-degrading YPN_2130 PF07690 Major Facilitator Superfamily YPN_2131 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPN_2131 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPN_2132 PF00356 Bacterial regulatory proteins, lacI family YPN_2134 PF00106 short chain dehydrogenase YPN_2135 PF01202 Shikimate kinase YPN_2136 PF04074 YhcH/YjgK/YiaL YPN_2138 PF00361 Proton-conducting membrane transporter YPN_2139 PF00361 Proton-conducting membrane transporter YPN_2140 PF00361 Proton-conducting membrane transporter YPN_2140 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YPN_2141 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YPN_2142 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YPN_2143 PF12838 4Fe-4S dicluster domain YPN_2144 PF00146 NADH dehydrogenase YPN_2145 PF00384 Molybdopterin oxidoreductase YPN_2145 PF01568 Molydopterin dinucleotide binding domain YPN_2145 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPN_2145 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YPN_2146 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YPN_2146 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPN_2146 PF10531 SLBB domain YPN_2148 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit YPN_2148 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit YPN_2149 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit YPN_2150 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YPN_2151 PF03466 LysR substrate binding domain YPN_2151 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_2152 PF00155 Aminotransferase class I and II YPN_2154 PF02080 TrkA-C domain YPN_2154 PF03600 Citrate transporter YPN_2155 PF13419 Haloacid dehalogenase-like hydrolase YPN_2156 PF03887 YfbU domain YPN_2157 PF04217 Protein of unknown function, DUF412 YPN_2158 PF00871 Acetokinase family YPN_2159 PF01515 Phosphate acetyl/butaryl transferase YPN_2159 PF07085 DRTGG domain YPN_2160 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPN_2160 PF00356 Bacterial regulatory proteins, lacI family YPN_2161 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPN_2163 PF00872 Transposase, Mutator family YPN_2164 PF00872 Transposase, Mutator family YPN_2165 PF03611 PTS system sugar-specific permease component YPN_2166 PF00293 NUDIX domain YPN_2167 PF12850 Calcineurin-like phosphoesterase superfamily domain YPN_2169 PF08338 Domain of unknown function (DUF1731) YPN_2169 PF01370 NAD dependent epimerase/dehydratase family YPN_2170 PF00005 ABC transporter YPN_2171 PF00528 Binding-protein-dependent transport system inner membrane component YPN_2172 PF00528 Binding-protein-dependent transport system inner membrane component YPN_2173 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPN_2174 PF02441 Flavoprotein YPN_2175 PF00156 Phosphoribosyl transferase domain YPN_2176 PF02674 Colicin V production protein YPN_2177 PF05036 Sporulation related domain YPN_2178 PF02875 Mur ligase family, glutamate ligase domain YPN_2178 PF08245 Mur ligase middle domain YPN_2179 PF01039 Carboxyl transferase domain YPN_2179 PF17848 Acetyl-coA carboxylase zinc finger domain YPN_2180 PF09335 SNARE associated Golgi protein YPN_2181 PF01416 tRNA pseudouridine synthase YPN_2182 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPN_2182 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPN_2183 PF11890 Domain of unknown function (DUF3410) YPN_2183 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPN_2183 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPN_2185 PF00892 EamA-like transporter family YPN_2187 PF00419 Fimbrial protein YPN_2188 PF01177 Asp/Glu/Hydantoin racemase YPN_2189 PF00109 Beta-ketoacyl synthase, N-terminal domain YPN_2189 PF02801 Beta-ketoacyl synthase, C-terminal domain YPN_2190 PF05430 S-adenosyl-L-methionine-dependent methyltransferase YPN_2190 PF01266 FAD dependent oxidoreductase YPN_2191 PF08891 YfcL protein YPN_2192 PF04315 Elongation factor P hydroxylase YPN_2193 PF01925 Sulfite exporter TauE/SafE YPN_2194 PF03411 Penicillin-insensitive murein endopeptidase YPN_2195 PF01264 Chorismate synthase YPN_2196 PF05175 Methyltransferase small domain YPN_2197 PF01713 Smr domain YPN_2199 PF00300 Histidine phosphatase superfamily (branch 1) YPN_2200 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPN_2200 PF00378 Enoyl-CoA hydratase/isomerase YPN_2200 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPN_2201 PF00108 Thiolase, N-terminal domain YPN_2201 PF02803 Thiolase, C-terminal domain YPN_2202 PF04175 Protein of unknown function (DUF406) YPN_2203 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) YPN_2204 PF04333 MlaA lipoprotein YPN_2205 PF03918 Cytochrome C biogenesis protein YPN_2206 PF03918 Cytochrome C biogenesis protein YPN_2207 PF08534 Redoxin YPN_2208 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal YPN_2208 PF01578 Cytochrome C assembly protein YPN_2209 PF03100 CcmE YPN_2210 PF04995 Heme exporter protein D (CcmD) YPN_2211 PF01578 Cytochrome C assembly protein YPN_2212 PF03379 CcmB protein YPN_2213 PF00005 ABC transporter YPN_2215 PF04011 LemA family YPN_2217 PF08274 PhnA Zinc-Ribbon YPN_2217 PF03831 PhnA domain YPN_2222 PF04717 Type VI secretion system, phage-baseplate injector YPN_2225 PF01695 IstB-like ATP binding protein YPN_2226 PF02796 Helix-turn-helix domain of resolvase YPN_2226 PF00665 Integrase core domain YPN_2229 PF08402 TOBE domain YPN_2229 PF00005 ABC transporter YPN_2230 PF00528 Binding-protein-dependent transport system inner membrane component YPN_2231 PF00528 Binding-protein-dependent transport system inner membrane component YPN_2233 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPN_2233 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPN_2240 PF00872 Transposase, Mutator family YPN_2241 PF00872 Transposase, Mutator family YPN_2252 PF05638 Type VI secretion system effector, Hcp YPN_2257 PF01066 CDP-alcohol phosphatidyltransferase YPN_2258 PF08459 UvrC Helix-hairpin-helix N-terminal YPN_2258 PF01541 GIY-YIG catalytic domain YPN_2258 PF02151 UvrB/uvrC motif YPN_2259 PF00196 Bacterial regulatory proteins, luxR family YPN_2259 PF00072 Response regulator receiver domain YPN_2260 PF10769 Protein of unknown function (DUF2594) YPN_2261 PF06942 GlpM protein YPN_2263 PF13505 Outer membrane protein beta-barrel domain YPN_2264 PF00324 Amino acid permease YPN_2265 PF01344 Kelch motif YPN_2266 PF03358 NADPH-dependent FMN reductase YPN_2267 PF04261 Dyp-type peroxidase family YPN_2268 PF13473 Cupredoxin-like domain YPN_2268 PF09375 Imelysin YPN_2269 PF03239 Iron permease FTR1 family YPN_2270 PF00474 Sodium:solute symporter family YPN_2272 PF01619 Proline dehydrogenase YPN_2272 PF00171 Aldehyde dehydrogenase family YPN_2272 PF14850 DNA-binding domain of Proline dehydrogenase YPN_2272 PF18327 Proline utilization A proline dehydrogenase N-terminal domain YPN_2278 PF00291 Pyridoxal-phosphate dependent enzyme YPN_2279 PF02899 Phage integrase, N-terminal SAM-like domain YPN_2280 PF04542 Sigma-70 region 2 YPN_2280 PF04539 Sigma-70 region 3 YPN_2280 PF04545 Sigma-70, region 4 YPN_2281 PF00669 Bacterial flagellin N-terminal helical region YPN_2281 PF08884 Flagellin D3 domain YPN_2281 PF00700 Bacterial flagellin C-terminal helical region YPN_2282 PF07196 Flagellin hook IN motif YPN_2282 PF07195 Flagellar hook-associated protein 2 C-terminus YPN_2282 PF02465 Flagellar hook-associated protein 2 N-terminus YPN_2283 PF02561 Flagellar protein FliS YPN_2284 PF05400 Flagellar protein FliT YPN_2285 PF12833 Helix-turn-helix domain YPN_2287 PF02743 Cache domain YPN_2287 PF00672 HAMP domain YPN_2287 PF00211 Adenylate and Guanylate cyclase catalytic domain YPN_2288 PF01966 HD domain YPN_2289 PF00730 HhH-GPD superfamily base excision DNA repair protein YPN_2292 PF02049 Flagellar hook-basal body complex protein FliE YPN_2293 PF08345 Flagellar M-ring protein C-terminal YPN_2293 PF01514 Secretory protein of YscJ/FliF family YPN_2294 PF14842 FliG N-terminal domain YPN_2294 PF14841 FliG middle domain YPN_2294 PF01706 FliG C-terminal domain YPN_2295 PF02108 Flagellar assembly protein FliH YPN_2296 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPN_2296 PF18269 T3SS EscN ATPase C-terminal domain YPN_2297 PF02050 Flagellar FliJ protein YPN_2298 PF02120 Flagellar hook-length control protein FliK YPN_2299 PF03748 Flagellar basal body-associated protein FliL YPN_2300 PF02154 Flagellar motor switch protein FliM YPN_2300 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPN_2301 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPN_2301 PF16973 Flagellar motor switch protein FliN N-terminal YPN_2302 PF04347 Flagellar biosynthesis protein, FliO YPN_2303 PF00813 FliP family YPN_2304 PF01313 Bacterial export proteins, family 3 YPN_2305 PF01311 Bacterial export proteins, family 1 YPN_2308 PF00294 pfkB family carbohydrate kinase YPN_2309 PF02653 Branched-chain amino acid transport system / permease component YPN_2310 PF00005 ABC transporter YPN_2311 PF13407 Periplasmic binding protein domain YPN_2312 PF02653 Branched-chain amino acid transport system / permease component YPN_2313 PF00596 Class II Aldolase and Adducin N-terminal domain YPN_2314 PF04198 Putative sugar-binding domain YPN_2315 PF00669 Bacterial flagellin N-terminal helical region YPN_2316 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPN_2316 PF00460 Flagella basal body rod protein YPN_2317 PF10135 Rod binding protein YPN_2317 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase YPN_2318 PF02119 Flagellar P-ring protein YPN_2319 PF02107 Flagellar L-ring protein YPN_2320 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPN_2320 PF00460 Flagella basal body rod protein YPN_2321 PF00460 Flagella basal body rod protein YPN_2321 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPN_2322 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPN_2322 PF00460 Flagella basal body rod protein YPN_2322 PF07559 Flagellar basal body protein FlaE YPN_2323 PF03963 Flagellar hook capping protein - N-terminal region YPN_2323 PF13861 FlgD Tudor-like domain YPN_2323 PF13860 FlgD Ig-like domain YPN_2324 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPN_2324 PF00460 Flagella basal body rod protein YPN_2325 PF00460 Flagella basal body rod protein YPN_2326 PF17656 FlgA N-terminal domain YPN_2326 PF13144 Chaperone for flagella basal body P-ring formation YPN_2327 PF04316 Anti-sigma-28 factor, FlgM YPN_2328 PF05130 FlgN protein YPN_2329 PF09134 Invasin, domain 3 YPN_2329 PF07979 Intimin C-type lectin domain YPN_2329 PF11924 Inverse autotransporter, beta-domain YPN_2329 PF02369 Bacterial Ig-like domain (group 1) YPN_2331 PF02369 Bacterial Ig-like domain (group 1) YPN_2331 PF11924 Inverse autotransporter, beta-domain YPN_2331 PF07979 Intimin C-type lectin domain YPN_2331 PF09134 Invasin, domain 3 YPN_2332 PF06366 Flagellar protein FlhE YPN_2333 PF00771 FHIPEP family YPN_2334 PF01312 FlhB HrpN YscU SpaS Family YPN_2337 PF10709 Protein of unknown function (DUF2511) YPN_2339 PF04234 CopC domain YPN_2340 PF00210 Ferritin-like domain YPN_2341 PF06440 DNA polymerase III, theta subunit YPN_2342 PF00561 alpha/beta hydrolase fold YPN_2343 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain YPN_2343 PF00326 Prolyl oligopeptidase family YPN_2344 PF13995 YebF-like protein YPN_2346 PF07130 YebG protein YPN_2347 PF00270 DEAD/DEAH box helicase YPN_2347 PF03880 DbpA RNA binding domain YPN_2347 PF00271 Helicase conserved C-terminal domain YPN_2348 PF02222 ATP-grasp domain YPN_2349 PF03701 Uncharacterised protein family (UPF0181) YPN_2350 PF00425 chorismate binding enzyme YPN_2350 PF04715 Anthranilate synthase component I, N terminal region YPN_2351 PF00293 NUDIX domain YPN_2352 PF03313 Serine dehydratase alpha chain YPN_2352 PF03315 Serine dehydratase beta chain YPN_2353 PF01613 Flavin reductase like domain YPN_2354 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal YPN_2354 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal YPN_2355 PF07690 Major Facilitator Superfamily YPN_2356 PF03328 HpcH/HpaI aldolase/citrate lyase family YPN_2357 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPN_2358 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase YPN_2359 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPN_2360 PF00171 Aldehyde dehydrogenase family YPN_2361 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPN_2362 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPN_2363 PF01047 MarR family YPN_2364 PF03471 Transporter associated domain YPN_2364 PF03741 Integral membrane protein TerC family YPN_2365 PF03830 PTS system sorbose subfamily IIB component YPN_2365 PF03610 PTS system fructose IIA component YPN_2366 PF03609 PTS system sorbose-specific iic component YPN_2367 PF03613 PTS system mannose/fructose/sorbose family IID component YPN_2368 PF06173 Protein of unknown function (DUF986) YPN_2369 PF02659 Putative manganese efflux pump YPN_2370 PF07715 TonB-dependent Receptor Plug Domain YPN_2370 PF00593 TonB dependent receptor YPN_2372 PF00563 EAL domain YPN_2372 PF00990 Diguanylate cyclase, GGDEF domain YPN_2372 PF13426 PAS domain YPN_2372 PF08448 PAS fold YPN_2372 PF08447 PAS fold YPN_2372 PF05231 MASE1 YPN_2374 PF13847 Methyltransferase domain YPN_2376 PF00313 'Cold-shock' DNA-binding domain YPN_2377 PF10736 Protein of unknown function (DUF2627) YPN_2378 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP YPN_2379 PF00324 Amino acid permease YPN_2382 PF13974 YebO-like protein YPN_2383 PF13996 YobH-like protein YPN_2384 PF10964 Protein of unknown function (DUF2766) YPN_2385 PF12833 Helix-turn-helix domain YPN_2387 PF00005 ABC transporter YPN_2387 PF00664 ABC transporter transmembrane region YPN_2390 PF06167 Glucose-regulated metallo-peptidase M90 YPN_2391 PF00356 Bacterial regulatory proteins, lacI family YPN_2391 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPN_2392 PF01695 IstB-like ATP binding protein YPN_2393 PF01695 IstB-like ATP binding protein YPN_2394 PF00665 Integrase core domain YPN_2394 PF02796 Helix-turn-helix domain of resolvase YPN_2395 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPN_2395 PF00356 Bacterial regulatory proteins, lacI family YPN_2396 PF00872 Transposase, Mutator family YPN_2397 PF01306 LacY proton/sugar symporter YPN_2398 PF16875 Glycosyl hydrolase family 36 N-terminal domain YPN_2398 PF16874 Glycosyl hydrolase family 36 C-terminal domain YPN_2400 PF17837 4'-phosphopantetheinyl transferase N-terminal domain YPN_2400 PF01648 4'-phosphopantetheinyl transferase superfamily YPN_2401 PF03480 Bacterial extracellular solute-binding protein, family 7 YPN_2403 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component YPN_2404 PF00196 Bacterial regulatory proteins, luxR family YPN_2404 PF00072 Response regulator receiver domain YPN_2405 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) YPN_2407 PF01522 Polysaccharide deacetylase YPN_2409 PF01554 MatE YPN_2410 PF00764 Arginosuccinate synthase YPN_2411 PF01070 FMN-dependent dehydrogenase YPN_2412 PF13378 Enolase C-terminal domain-like YPN_2412 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPN_2413 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPN_2415 PF04134 Protein of unknown function, DUF393 YPN_2416 PF07690 Major Facilitator Superfamily YPN_2418 PF02369 Bacterial Ig-like domain (group 1) YPN_2418 PF11924 Inverse autotransporter, beta-domain YPN_2418 PF09134 Invasin, domain 3 YPN_2419 PF00872 Transposase, Mutator family YPN_2420 PF04363 Protein of unknown function (DUF496) YPN_2422 PF08411 Exonuclease C-terminal YPN_2422 PF00929 Exonuclease YPN_2423 PF13520 Amino acid permease YPN_2424 PF00465 Iron-containing alcohol dehydrogenase YPN_2425 PF00005 ABC transporter YPN_2426 PF00005 ABC transporter YPN_2427 PF02653 Branched-chain amino acid transport system / permease component YPN_2429 PF01370 NAD dependent epimerase/dehydratase family YPN_2430 PF08029 HisG, C-terminal domain YPN_2430 PF01634 ATP phosphoribosyltransferase YPN_2431 PF00815 Histidinol dehydrogenase YPN_2432 PF00155 Aminotransferase class I and II YPN_2433 PF00475 Imidazoleglycerol-phosphate dehydratase YPN_2435 PF00117 Glutamine amidotransferase class-I YPN_2436 PF00977 Histidine biosynthesis protein YPN_2437 PF00977 Histidine biosynthesis protein YPN_2438 PF01502 Phosphoribosyl-AMP cyclohydrolase YPN_2438 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase YPN_2439 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain YPN_2439 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPN_2440 PF00483 Nucleotidyl transferase YPN_2441 PF00483 Nucleotidyl transferase YPN_2442 PF04183 IucA / IucC family YPN_2442 PF06276 Ferric iron reductase FhuF-like transporter YPN_2443 PF07715 TonB-dependent Receptor Plug Domain YPN_2443 PF07660 Secretin and TonB N terminus short domain YPN_2443 PF00593 TonB dependent receptor YPN_2444 PF01497 Periplasmic binding protein YPN_2445 PF01032 FecCD transport family YPN_2446 PF01032 FecCD transport family YPN_2447 PF00005 ABC transporter YPN_2448 PF06276 Ferric iron reductase FhuF-like transporter YPN_2448 PF04183 IucA / IucC family YPN_2450 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPN_2451 PF00282 Pyridoxal-dependent decarboxylase conserved domain YPN_2452 PF06276 Ferric iron reductase FhuF-like transporter YPN_2452 PF11575 FhuF 2Fe-2S C-terminal domain YPN_2453 PF00571 CBS domain YPN_2453 PF03471 Transporter associated domain YPN_2453 PF03741 Integral membrane protein TerC family YPN_2454 PF05170 AsmA family YPN_2455 PF00692 dUTPase YPN_2456 PF00485 Phosphoribulokinase / Uridine kinase family YPN_2457 PF10609 NUBPL iron-transfer P-loop NTPase YPN_2458 PF09334 tRNA synthetases class I (M) YPN_2458 PF01588 Putative tRNA binding domain YPN_2459 PF01797 Transposase IS200 like YPN_2464 PF07690 Major Facilitator Superfamily YPN_2465 PF03788 LrgA family YPN_2466 PF04172 LrgB-like family YPN_2467 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region YPN_2467 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPN_2468 PF00390 Malic enzyme, N-terminal domain YPN_2468 PF03949 Malic enzyme, NAD binding domain YPN_2469 PF02698 DUF218 domain YPN_2470 PF02653 Branched-chain amino acid transport system / permease component YPN_2471 PF00005 ABC transporter YPN_2472 PF13407 Periplasmic binding protein domain YPN_2473 PF04235 Protein of unknown function (DUF418) YPN_2474 PF01227 GTP cyclohydrolase I YPN_2475 PF06779 Uncharacterised MFS-type transporter YbfB YPN_2476 PF03466 LysR substrate binding domain YPN_2476 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_2477 PF08240 Alcohol dehydrogenase GroES-like domain YPN_2477 PF00107 Zinc-binding dehydrogenase YPN_2478 PF00756 Putative esterase YPN_2480 PF13533 Biotin-lipoyl like YPN_2481 PF00005 ABC transporter YPN_2483 PF00994 Probable molybdopterin binding domain YPN_2483 PF03453 MoeA N-terminal region (domain I and II) YPN_2483 PF03454 MoeA C-terminal region (domain IV) YPN_2484 PF00899 ThiF family YPN_2485 PF00872 Transposase, Mutator family YPN_2487 PF12848 ABC transporter YPN_2487 PF00005 ABC transporter YPN_2499 PF13592 Winged helix-turn helix YPN_2499 PF13358 DDE superfamily endonuclease YPN_2500 PF13592 Winged helix-turn helix YPN_2500 PF13358 DDE superfamily endonuclease YPN_2501 PF13592 Winged helix-turn helix YPN_2501 PF13358 DDE superfamily endonuclease YPN_2508 PF00004 ATPase family associated with various cellular activities (AAA) YPN_2508 PF17871 AAA lid domain YPN_2508 PF10431 C-terminal, D2-small domain, of ClpB protein YPN_2508 PF07724 AAA domain (Cdc48 subfamily) YPN_2510 PF05736 OprF membrane domain YPN_2510 PF00691 OmpA family YPN_2515 PF00698 Acyl transferase domain YPN_2516 PF00550 Phosphopantetheine attachment site YPN_2519 PF00378 Enoyl-CoA hydratase/isomerase YPN_2521 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal YPN_2521 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal YPN_2523 PF00109 Beta-ketoacyl synthase, N-terminal domain YPN_2523 PF02801 Beta-ketoacyl synthase, C-terminal domain YPN_2524 PF07977 FabA-like domain YPN_2527 PF01565 FAD binding domain YPN_2527 PF08031 Berberine and berberine like YPN_2531 PF13610 DDE domain YPN_2532 PF04358 DsrC like protein YPN_2533 PF00708 Acylphosphatase YPN_2534 PF17785 PUA-like domain YPN_2534 PF10672 S-adenosylmethionine-dependent methyltransferase YPN_2535 PF08755 Hemimethylated DNA-binding protein YccV like YPN_2536 PF13380 CoA binding domain YPN_2537 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) YPN_2538 PF02142 MGS-like domain YPN_2539 PF00580 UvrD/REP helicase N-terminal domain YPN_2539 PF13361 UvrD-like helicase C-terminal domain YPN_2539 PF12462 DNA helicase IV / RNA helicase N terminal YPN_2540 PF03733 Inner membrane component domain YPN_2541 PF12805 FUSC-like inner membrane protein yccS YPN_2542 PF04994 TfoX C-terminal domain YPN_2542 PF04993 TfoX N-terminal domain YPN_2543 PF03846 Cell division inhibitor SulA YPN_2544 PF00691 OmpA family YPN_2544 PF01389 OmpA-like transmembrane domain YPN_2545 PF01797 Transposase IS200 like YPN_2546 PF06303 MatP N-terminal domain YPN_2546 PF17414 MatP C-terminal ribbon-helix-helix domain YPN_2547 PF13654 AAA domain YPN_2547 PF05362 Lon protease (S16) C-terminal proteolytic domain YPN_2548 PF07977 FabA-like domain YPN_2549 PF02801 Beta-ketoacyl synthase, C-terminal domain YPN_2549 PF00109 Beta-ketoacyl synthase, N-terminal domain YPN_2550 PF02796 Helix-turn-helix domain of resolvase YPN_2550 PF00665 Integrase core domain YPN_2551 PF01695 IstB-like ATP binding protein YPN_2552 PF02801 Beta-ketoacyl synthase, C-terminal domain YPN_2552 PF00109 Beta-ketoacyl synthase, N-terminal domain YPN_2553 PF01797 Transposase IS200 like YPN_2554 PF04957 Ribosome modulation factor YPN_2555 PF03886 ABC-type transport auxiliary lipoprotein component YPN_2556 PF02470 MlaD protein YPN_2557 PF04403 Paraquat-inducible protein A YPN_2558 PF16326 ABC transporter C-terminal domain YPN_2558 PF12848 ABC transporter YPN_2558 PF00005 ABC transporter YPN_2559 PF01170 Putative RNA methylase family UPF0020 YPN_2559 PF10672 S-adenosylmethionine-dependent methyltransferase YPN_2559 PF02926 THUMP domain YPN_2560 PF03476 MOSC N-terminal beta barrel domain YPN_2560 PF00111 2Fe-2S iron-sulfur cluster binding domain YPN_2560 PF03473 MOSC domain YPN_2561 PF07126 Cell-division protein ZapC YPN_2562 PF01180 Dihydroorotate dehydrogenase YPN_2563 PF11940 Domain of unknown function (DUF3458) Ig-like fold YPN_2563 PF01433 Peptidase family M1 domain YPN_2563 PF17432 Domain of unknown function (DUF3458_C) ARM repeats YPN_2564 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain YPN_2564 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family YPN_2565 PF01336 OB-fold nucleic acid binding domain YPN_2565 PF00152 tRNA synthetases class II (D, K and N) YPN_2566 PF00267 Gram-negative porin YPN_2567 PF00155 Aminotransferase class I and II YPN_2568 PF00753 Metallo-beta-lactamase superfamily YPN_2569 PF05951 Bacterial protein of unknown function (DUF882) YPN_2570 PF03734 L,D-transpeptidase catalytic domain YPN_2570 PF01471 Putative peptidoglycan binding domain YPN_2572 PF04310 MukB N-terminal YPN_2572 PF16330 MukB hinge domain YPN_2573 PF04288 MukE-like family YPN_2574 PF17192 MukF middle domain YPN_2574 PF17193 MukF C-terminal domain YPN_2574 PF03882 MukF winged-helix domain YPN_2576 PF01636 Phosphotransferase enzyme family YPN_2577 PF02348 Cytidylyltransferase YPN_2578 PF03966 Trm112p-like protein YPN_2579 PF00313 'Cold-shock' DNA-binding domain YPN_2580 PF07063 Domain of unknown function (DUF1338) YPN_2581 PF02606 Tetraacyldisaccharide-1-P 4'-kinase YPN_2582 PF00664 ABC transporter transmembrane region YPN_2582 PF00005 ABC transporter YPN_2583 PF00753 Metallo-beta-lactamase superfamily YPN_2583 PF03772 Competence protein YPN_2584 PF00216 Bacterial DNA-binding protein YPN_2585 PF00575 S1 RNA binding domain YPN_2586 PF02224 Cytidylate kinase YPN_2587 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPN_2588 PF00266 Aminotransferase class-V YPN_2590 PF05658 Head domain of trimeric autotransporter adhesin YPN_2590 PF05662 Coiled stalk of trimeric autotransporter adhesin YPN_2590 PF13018 Extended Signal Peptide of Type V secretion system YPN_2590 PF13018 Extended Signal Peptide of Type V secretion system YPN_2590 PF03895 YadA-like membrane anchor domain YPN_2590 PF05662 Coiled stalk of trimeric autotransporter adhesin YPN_2590 PF05658 Head domain of trimeric autotransporter adhesin YPN_2590 PF03895 YadA-like membrane anchor domain YPN_2591 PF00710 Asparaginase, N-terminal YPN_2591 PF17763 Glutaminase/Asparaginase C-terminal domain YPN_2592 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding YPN_2592 PF18381 YcaO cyclodehydratase C-terminal domain YPN_2593 PF01226 Formate/nitrite transporter YPN_2594 PF02901 Pyruvate formate lyase-like YPN_2594 PF01228 Glycine radical YPN_2596 PF04055 Radical SAM superfamily YPN_2597 PF07690 Major Facilitator Superfamily YPN_2598 PF00665 Integrase core domain YPN_2598 PF02796 Helix-turn-helix domain of resolvase YPN_2599 PF01695 IstB-like ATP binding protein YPN_2600 PF07690 Major Facilitator Superfamily YPN_2601 PF02403 Seryl-tRNA synthetase N-terminal domain YPN_2601 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPN_2602 PF00004 ATPase family associated with various cellular activities (AAA) YPN_2602 PF12002 MgsA AAA+ ATPase C terminal YPN_2602 PF16193 AAA C-terminal domain YPN_2603 PF03548 Outer membrane lipoprotein carrier protein LolA YPN_2604 PF01580 FtsK/SpoIIIE family YPN_2604 PF13491 4TM region of DNA translocase FtsK/SpoIIIE YPN_2604 PF09397 Ftsk gamma domain YPN_2604 PF17854 FtsK alpha domain YPN_2605 PF01037 Lrp/AsnC ligand binding domain YPN_2606 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPN_2607 PF00005 ABC transporter YPN_2607 PF00664 ABC transporter transmembrane region YPN_2608 PF00005 ABC transporter YPN_2608 PF00664 ABC transporter transmembrane region YPN_2609 PF03588 Leucyl/phenylalanyl-tRNA protein transferase YPN_2610 PF01176 Translation initiation factor 1A / IF-1 YPN_2612 PF10431 C-terminal, D2-small domain, of ClpB protein YPN_2612 PF07724 AAA domain (Cdc48 subfamily) YPN_2612 PF00004 ATPase family associated with various cellular activities (AAA) YPN_2612 PF17871 AAA lid domain YPN_2612 PF02861 Clp amino terminal domain, pathogenicity island component YPN_2613 PF02617 ATP-dependent Clp protease adaptor protein ClpS YPN_2614 PF00313 'Cold-shock' DNA-binding domain YPN_2615 PF02687 FtsX-like permease family YPN_2615 PF00005 ABC transporter YPN_2615 PF12704 MacB-like periplasmic core domain YPN_2616 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPN_2618 PF04393 Protein of unknown function (DUF535) YPN_2619 PF11398 Protein of unknown function (DUF2813) YPN_2620 PF03956 Lysine exporter LysO YPN_2621 PF03063 Prismane/CO dehydrogenase family YPN_2622 PF00111 2Fe-2S iron-sulfur cluster binding domain YPN_2622 PF00970 Oxidoreductase FAD-binding domain YPN_2622 PF00175 Oxidoreductase NAD-binding domain YPN_2623 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPN_2623 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPN_2623 PF00205 Thiamine pyrophosphate enzyme, central domain YPN_2625 PF01212 Beta-eliminating lyase YPN_2626 PF13460 NAD(P)H-binding YPN_2626 PF11066 Protein of unknown function (DUF2867) YPN_2627 PF01370 NAD dependent epimerase/dehydratase family YPN_2628 PF12883 Protein of unknown function (DUF3828) YPN_2630 PF01817 Chorismate mutase type II YPN_2631 PF00005 ABC transporter YPN_2632 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPN_2633 PF00528 Binding-protein-dependent transport system inner membrane component YPN_2634 PF00528 Binding-protein-dependent transport system inner membrane component YPN_2635 PF00528 Binding-protein-dependent transport system inner membrane component YPN_2636 PF00892 EamA-like transporter family YPN_2637 PF10100 Staphylopine dehydrogenase YPN_2638 PF03059 Nicotianamine synthase protein YPN_2639 PF00005 ABC transporter YPN_2640 PF01032 FecCD transport family YPN_2643 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPN_2644 PF05958 tRNA (Uracil-5-)-methyltransferase YPN_2645 PF10767 Protein of unknown function (DUF2593) YPN_2646 PF00528 Binding-protein-dependent transport system inner membrane component YPN_2647 PF00528 Binding-protein-dependent transport system inner membrane component YPN_2648 PF08402 TOBE domain YPN_2648 PF00005 ABC transporter YPN_2649 PF13416 Bacterial extracellular solute-binding protein YPN_2650 PF10722 Putative bacterial sensory transduction regulator YPN_2651 PF07214 Protein of unknown function (DUF1418) YPN_2652 PF00462 Glutaredoxin YPN_2653 PF02080 TrkA-C domain YPN_2653 PF06826 Predicted Permease Membrane Region YPN_2655 PF01569 PAP2 superfamily YPN_2656 PF01791 DeoC/LacD family aldolase YPN_2657 PF08220 DeoR-like helix-turn-helix domain YPN_2657 PF00455 DeoR C terminal sensor domain YPN_2659 PF07943 Penicillin-binding protein 5, C-terminal domain YPN_2659 PF00768 D-alanyl-D-alanine carboxypeptidase YPN_2660 PF00528 Binding-protein-dependent transport system inner membrane component YPN_2661 PF00005 ABC transporter YPN_2661 PF09383 NIL domain YPN_2662 PF03180 NLPA lipoprotein YPN_2665 PF00043 Glutathione S-transferase, C-terminal domain YPN_2665 PF13417 Glutathione S-transferase, N-terminal domain YPN_2666 PF07715 TonB-dependent Receptor Plug Domain YPN_2666 PF00593 TonB dependent receptor YPN_2667 PF00005 ABC transporter YPN_2668 PF01032 FecCD transport family YPN_2670 PF00324 Amino acid permease YPN_2671 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_2671 PF03466 LysR substrate binding domain YPN_2672 PF03601 Conserved hypothetical protein 698 YPN_2673 PF01261 Xylose isomerase-like TIM barrel YPN_2674 PF13954 PapC N-terminal domain YPN_2674 PF00577 Outer membrane usher protein YPN_2674 PF13953 PapC C-terminal domain YPN_2675 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPN_2675 PF02753 Pili assembly chaperone PapD, C-terminal domain YPN_2677 PF17550 Family of unknown function YPN_2678 PF00486 Transcriptional regulatory protein, C terminal YPN_2679 PF02378 Phosphotransferase system, EIIC YPN_2679 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPN_2680 PF00294 pfkB family carbohydrate kinase YPN_2681 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPN_2681 PF00381 PTS HPr component phosphorylation site YPN_2682 PF00293 NUDIX domain YPN_2683 PF02653 Branched-chain amino acid transport system / permease component YPN_2684 PF00005 ABC transporter YPN_2686 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPN_2687 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPN_2687 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPN_2688 PF00171 Aldehyde dehydrogenase family YPN_2690 PF01842 ACT domain YPN_2690 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPN_2690 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPN_2692 PF03692 Putative zinc- or iron-chelating domain YPN_2693 PF03222 Tryptophan/tyrosine permease family YPN_2694 PF01132 Elongation factor P (EF-P) OB domain YPN_2694 PF08207 Elongation factor P (EF-P) KOW-like domain YPN_2694 PF09285 Elongation factor P, C-terminal YPN_2695 PF03786 D-mannonate dehydratase (UxuA) YPN_2696 PF01232 Mannitol dehydrogenase Rossmann domain YPN_2696 PF08125 Mannitol dehydrogenase C-terminal domain YPN_2697 PF00392 Bacterial regulatory proteins, gntR family YPN_2697 PF07729 FCD domain YPN_2699 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPN_2699 PF07683 Cobalamin synthesis protein cobW C-terminal domain YPN_2700 PF01569 PAP2 superfamily YPN_2701 PF00877 NlpC/P60 family YPN_2702 PF00563 EAL domain YPN_2702 PF12792 CSS motif domain associated with EAL YPN_2703 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPN_2704 PF00528 Binding-protein-dependent transport system inner membrane component YPN_2705 PF00528 Binding-protein-dependent transport system inner membrane component YPN_2705 PF12911 N-terminal TM domain of oligopeptide transport permease C YPN_2706 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPN_2706 PF00005 ABC transporter YPN_2707 PF13989 YejG-like protein YPN_2709 PF07690 Major Facilitator Superfamily YPN_2710 PF01479 S4 domain YPN_2710 PF00849 RNA pseudouridylate synthase YPN_2711 PF00271 Helicase conserved C-terminal domain YPN_2711 PF04851 Type III restriction enzyme, res subunit YPN_2712 PF01386 Ribosomal L25p family YPN_2713 PF01797 Transposase IS200 like YPN_2714 PF04245 37-kD nucleoid-associated bacterial protein YPN_2715 PF07208 Protein of unknown function (DUF1414) YPN_2716 PF00884 Sulfatase YPN_2716 PF11893 Domain of unknown function (DUF3413) YPN_2718 PF05638 Type VI secretion system effector, Hcp YPN_2722 PF00232 Glycosyl hydrolase family 1 YPN_2723 PF01380 SIS domain YPN_2723 PF01418 Helix-turn-helix domain, rpiR family YPN_2724 PF07484 Phage Tail Collar Domain YPN_2727 PF04865 Baseplate J-like protein YPN_2736 PF04984 Phage tail sheath protein subtilisin-like domain YPN_2736 PF17482 Phage tail sheath C-terminal domain YPN_2740 PF01261 Xylose isomerase-like TIM barrel YPN_2741 PF00455 DeoR C terminal sensor domain YPN_2741 PF08220 DeoR-like helix-turn-helix domain YPN_2742 PF00596 Class II Aldolase and Adducin N-terminal domain YPN_2743 PF07005 Sugar-binding N-terminal domain YPN_2743 PF17042 Nucleotide-binding C-terminal domain YPN_2744 PF06530 Phage antitermination protein Q YPN_2745 PF00717 Peptidase S24-like YPN_2745 PF01381 Helix-turn-helix YPN_2747 PF06183 DinI-like family YPN_2748 PF01278 Omptin family YPN_2749 PF02743 Cache domain YPN_2749 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPN_2749 PF00672 HAMP domain YPN_2750 PF12706 Beta-lactamase superfamily domain YPN_2753 PF00144 Beta-lactamase YPN_2755 PF00267 Gram-negative porin YPN_2756 PF07690 Major Facilitator Superfamily YPN_2757 PF01627 Hpt domain YPN_2757 PF16359 RcsD-ABL domain YPN_2757 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_2758 PF16359 RcsD-ABL domain YPN_2758 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_2758 PF01627 Hpt domain YPN_2759 PF00196 Bacterial regulatory proteins, luxR family YPN_2759 PF00072 Response regulator receiver domain YPN_2760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_2760 PF00512 His Kinase A (phospho-acceptor) domain YPN_2760 PF09456 RcsC Alpha-Beta-Loop (ABL) YPN_2760 PF00072 Response regulator receiver domain YPN_2761 PF00521 DNA gyrase/topoisomerase IV, subunit A YPN_2761 PF03989 DNA gyrase C-terminal domain, beta-propeller YPN_2763 PF00317 Ribonucleotide reductase, all-alpha domain YPN_2763 PF02867 Ribonucleotide reductase, barrel domain YPN_2763 PF03477 ATP cone domain YPN_2764 PF00268 Ribonucleotide reductase, small chain YPN_2765 PF00111 2Fe-2S iron-sulfur cluster binding domain YPN_2766 PF03974 Ecotin YPN_2767 PF00994 Probable molybdopterin binding domain YPN_2768 PF03222 Tryptophan/tyrosine permease family YPN_2769 PF07437 YfaZ precursor YPN_2770 PF06628 Catalase-related immune-responsive YPN_2770 PF00199 Catalase YPN_2771 PF13307 Helicase C-terminal domain YPN_2771 PF06733 DEAD_2 YPN_2772 PF00267 Gram-negative porin YPN_2773 PF00892 EamA-like transporter family YPN_2775 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPN_2775 PF01276 Orn/Lys/Arg decarboxylase, major domain YPN_2775 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPN_2776 PF13520 Amino acid permease YPN_2777 PF00528 Binding-protein-dependent transport system inner membrane component YPN_2778 PF00005 ABC transporter YPN_2779 PF00528 Binding-protein-dependent transport system inner membrane component YPN_2780 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPN_2781 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPN_2782 PF00581 Rhodanese-like domain YPN_2785 PF00005 ABC transporter YPN_2786 PF00005 ABC transporter YPN_2787 PF02653 Branched-chain amino acid transport system / permease component YPN_2788 PF02653 Branched-chain amino acid transport system / permease component YPN_2789 PF00158 Sigma-54 interaction domain YPN_2789 PF02954 Bacterial regulatory protein, Fis family YPN_2789 PF13188 PAS domain YPN_2790 PF07308 Protein of unknown function (DUF1456) YPN_2791 PF00528 Binding-protein-dependent transport system inner membrane component YPN_2792 PF00528 Binding-protein-dependent transport system inner membrane component YPN_2794 PF00005 ABC transporter YPN_2795 PF04226 Transglycosylase associated protein YPN_2798 PF01844 HNH endonuclease YPN_2799 PF01928 CYTH domain YPN_2800 PF09330 D-lactate dehydrogenase, membrane binding YPN_2800 PF01565 FAD binding domain YPN_2801 PF00768 D-alanyl-D-alanine carboxypeptidase YPN_2803 PF01207 Dihydrouridine synthase (Dus) YPN_2806 PF00270 DEAD/DEAH box helicase YPN_2806 PF00271 Helicase conserved C-terminal domain YPN_2807 PF02371 Transposase IS116/IS110/IS902 family YPN_2807 PF01548 Transposase YPN_2808 PF00872 Transposase, Mutator family YPN_2812 PF13358 DDE superfamily endonuclease YPN_2812 PF13592 Winged helix-turn helix YPN_2813 PF02371 Transposase IS116/IS110/IS902 family YPN_2813 PF01548 Transposase YPN_2814 PF00271 Helicase conserved C-terminal domain YPN_2814 PF00270 DEAD/DEAH box helicase YPN_2815 PF09209 Tetracyclin repressor-like, C-terminal domain YPN_2815 PF00440 Bacterial regulatory proteins, tetR family YPN_2816 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPN_2817 PF00005 ABC transporter YPN_2822 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_2822 PF03466 LysR substrate binding domain YPN_2823 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPN_2824 PF00158 Sigma-54 interaction domain YPN_2824 PF00072 Response regulator receiver domain YPN_2824 PF02954 Bacterial regulatory protein, Fis family YPN_2825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_2825 PF00512 His Kinase A (phospho-acceptor) domain YPN_2826 PF13801 Heavy-metal resistance YPN_2827 PF03825 Nucleoside H+ symporter YPN_2829 PF03825 Nucleoside H+ symporter YPN_2830 PF01048 Phosphorylase superfamily YPN_2832 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_2832 PF03466 LysR substrate binding domain YPN_2833 PF02028 BCCT, betaine/carnitine/choline family transporter YPN_2834 PF00440 Bacterial regulatory proteins, tetR family YPN_2834 PF13977 BetI-type transcriptional repressor, C-terminal YPN_2835 PF00171 Aldehyde dehydrogenase family YPN_2836 PF00732 GMC oxidoreductase YPN_2836 PF05199 GMC oxidoreductase YPN_2837 PF01797 Transposase IS200 like YPN_2838 PF01027 Inhibitor of apoptosis-promoting Bax1 YPN_2839 PF02391 MoaE protein YPN_2840 PF02597 ThiS family YPN_2841 PF01967 MoaC family YPN_2842 PF04055 Radical SAM superfamily YPN_2842 PF06463 Molybdenum Cofactor Synthesis C YPN_2843 PF01933 Uncharacterised protein family UPF0052 YPN_2844 PF09905 DNA-binding protein VF530 YPN_2845 PF04851 Type III restriction enzyme, res subunit YPN_2845 PF00271 Helicase conserved C-terminal domain YPN_2845 PF02151 UvrB/uvrC motif YPN_2845 PF12344 Ultra-violet resistance protein B YPN_2845 PF17757 UvrB interaction domain YPN_2848 PF08241 Methyltransferase domain YPN_2849 PF00155 Aminotransferase class I and II YPN_2850 PF06968 Biotin and Thiamin Synthesis associated domain YPN_2850 PF04055 Radical SAM superfamily YPN_2851 PF00202 Aminotransferase class-III YPN_2852 PF10282 Lactonase, 7-bladed beta-propeller YPN_2854 PF00005 ABC transporter YPN_2854 PF03459 TOBE domain YPN_2855 PF00528 Binding-protein-dependent transport system inner membrane component YPN_2857 PF10766 Multidrug efflux pump-associated protein AcrZ YPN_2858 PF03459 TOBE domain YPN_2858 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_2859 PF00005 ABC transporter YPN_2861 PF16363 GDP-mannose 4,6 dehydratase YPN_2862 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain YPN_2862 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain YPN_2863 PF08544 GHMP kinases C terminal YPN_2863 PF10509 Galactokinase galactose-binding signature YPN_2863 PF00288 GHMP kinases N terminal domain YPN_2865 PF01263 Aldose 1-epimerase YPN_2867 PF00300 Histidine phosphatase superfamily (branch 1) YPN_2868 PF00793 DAHP synthetase I family YPN_2869 PF01545 Cation efflux family YPN_2870 PF04973 Nicotinamide mononucleotide transporter YPN_2871 PF02445 Quinolinate synthetase A protein YPN_2872 PF16331 TolA binding protein trimerisation YPN_2872 PF13174 Tetratricopeptide repeat YPN_2873 PF00691 OmpA family YPN_2874 PF04052 TolB amino-terminal domain YPN_2874 PF07676 WD40-like Beta Propeller Repeat YPN_2875 PF06519 TolA C-terminal YPN_2875 PF06519 TolA C-terminal YPN_2876 PF02472 Biopolymer transport protein ExbD/TolR YPN_2877 PF01618 MotA/TolQ/ExbB proton channel family YPN_2878 PF03061 Thioesterase superfamily YPN_2879 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) YPN_2880 PF02322 Cytochrome bd terminal oxidase subunit II YPN_2881 PF01654 Cytochrome bd terminal oxidase subunit I YPN_2882 PF02629 CoA binding domain YPN_2882 PF00549 CoA-ligase YPN_2883 PF00549 CoA-ligase YPN_2883 PF08442 ATP-grasp domain YPN_2884 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPN_2884 PF02817 e3 binding domain YPN_2884 PF00364 Biotin-requiring enzyme YPN_2885 PF16078 2-oxoglutarate dehydrogenase N-terminus YPN_2885 PF00676 Dehydrogenase E1 component YPN_2885 PF02779 Transketolase, pyrimidine binding domain YPN_2885 PF16870 2-oxoglutarate dehydrogenase C-terminal YPN_2886 PF13085 2Fe-2S iron-sulfur cluster binding domain YPN_2887 PF00890 FAD binding domain YPN_2887 PF02910 Fumarate reductase flavoprotein C-term YPN_2888 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YPN_2889 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YPN_2890 PF00285 Citrate synthase, C-terminal domain YPN_2891 PF01025 GrpE YPN_2892 PF01513 ATP-NAD kinase YPN_2893 PF02463 RecF/RecN/SMC N terminal domain YPN_2894 PF04355 SmpA / OmlA family YPN_2895 PF03658 RnfH family Ubiquitin YPN_2896 PF03364 Polyketide cyclase / dehydrase and lipid transport YPN_2897 PF01668 SmpB protein YPN_2899 PF13356 Arm DNA-binding domain YPN_2899 PF00589 Phage integrase family YPN_2910 PF05973 Phage derived protein Gp49-like (DUF891) YPN_2912 PF02796 Helix-turn-helix domain of resolvase YPN_2912 PF00665 Integrase core domain YPN_2913 PF01695 IstB-like ATP binding protein YPN_2915 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin YPN_2916 PF00929 Exonuclease YPN_2917 PF00075 RNase H YPN_2918 PF08241 Methyltransferase domain YPN_2919 PF00753 Metallo-beta-lactamase superfamily YPN_2919 PF16123 Hydroxyacylglutathione hydrolase C-terminus YPN_2920 PF01476 LysM domain YPN_2920 PF01464 Transglycosylase SLT domain YPN_2921 PF03372 Endonuclease/Exonuclease/phosphatase family YPN_2923 PF00248 Aldo/keto reductase family YPN_2926 PF09383 NIL domain YPN_2926 PF00005 ABC transporter YPN_2927 PF00528 Binding-protein-dependent transport system inner membrane component YPN_2928 PF03180 NLPA lipoprotein YPN_2929 PF16358 RcsF lipoprotein YPN_2930 PF01980 tRNA-methyltransferase O YPN_2930 PF18389 TrmO C-terminal domain YPN_2931 PF04073 Aminoacyl-tRNA editing domain YPN_2931 PF03129 Anticodon binding domain YPN_2931 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPN_2932 PF04170 NlpE N-terminal domain YPN_2932 PF17185 NlpE C-terminal OB domain YPN_2933 PF00472 RF-1 domain YPN_2934 PF07152 YaeQ protein YPN_2935 PF06786 Uncharacterised protein family (UPF0253) YPN_2936 PF07073 Modulator of Rho-dependent transcription termination (ROF) YPN_2937 PF00034 Cytochrome c YPN_2938 PF09179 TilS substrate binding domain YPN_2938 PF01171 PP-loop family YPN_2938 PF11734 TilS substrate C-terminal domain YPN_2939 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPN_2940 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit YPN_2941 PF14579 Helix-hairpin-helix motif YPN_2941 PF01336 OB-fold nucleic acid binding domain YPN_2941 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YPN_2941 PF07733 Bacterial DNA polymerase III alpha NTPase domain YPN_2941 PF02811 PHP domain YPN_2942 PF01351 Ribonuclease HII YPN_2943 PF02684 Lipid-A-disaccharide synthetase YPN_2944 PF00132 Bacterial transferase hexapeptide (six repeats) YPN_2944 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 YPN_2945 PF07977 FabA-like domain YPN_2946 PF00132 Bacterial transferase hexapeptide (six repeats) YPN_2946 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD YPN_2947 PF03938 Outer membrane protein (OmpH-like) YPN_2948 PF01103 Surface antigen YPN_2948 PF07244 Surface antigen variable number repeat YPN_2949 PF02163 Peptidase family M50 YPN_2949 PF17820 PDZ domain YPN_2951 PF01255 Putative undecaprenyl diphosphate synthase YPN_2952 PF13288 DXP reductoisomerase C-terminal domain YPN_2952 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain YPN_2952 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase YPN_2953 PF01765 Ribosome recycling factor YPN_2954 PF00696 Amino acid kinase family YPN_2956 PF00889 Elongation factor TS YPN_2957 PF00318 Ribosomal protein S2 YPN_2958 PF00557 Metallopeptidase family M24 YPN_2959 PF01966 HD domain YPN_2959 PF08335 GlnD PII-uridylyltransferase YPN_2959 PF01842 ACT domain YPN_2959 PF01909 Nucleotidyltransferase domain YPN_2960 PF14602 Hexapeptide repeat of succinyl-transferase YPN_2960 PF00132 Bacterial transferase hexapeptide (six repeats) YPN_2960 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal YPN_2962 PF11944 Protein of unknown function (DUF3461) YPN_2963 PF00258 Flavodoxin YPN_2964 PF00849 RNA pseudouridylate synthase YPN_2965 PF04287 tRNA pseudouridine synthase C YPN_2966 PF01797 Transposase IS200 like YPN_2967 PF07348 Syd protein (SUKH-2) YPN_2968 PF14489 QueF-like protein YPN_2968 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term YPN_2969 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases YPN_2969 PF03641 Possible lysine decarboxylase YPN_2969 PF11892 Domain of unknown function (DUF3412) YPN_2970 PF01367 5'-3' exonuclease, C-terminal SAM fold YPN_2970 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPN_2971 PF18125 RlmM ferredoxin-like domain YPN_2971 PF01728 FtsJ-like methyltransferase YPN_2972 PF04241 Protein of unknown function (DUF423) YPN_2973 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_2973 PF03466 LysR substrate binding domain YPN_2974 PF00266 Aminotransferase class-V YPN_2975 PF02657 Fe-S metabolism associated domain YPN_2976 PF00899 ThiF family YPN_2977 PF06725 3D domain YPN_2977 PF03562 MltA specific insert domain YPN_2978 PF11741 AMIN domain YPN_2978 PF01520 N-acetylmuramoyl-L-alanine amidase YPN_2979 PF00696 Amino acid kinase family YPN_2979 PF00583 Acetyltransferase (GNAT) family YPN_2980 PF13538 UvrD-like helicase C-terminal domain YPN_2981 PF00580 UvrD/REP helicase N-terminal domain YPN_2981 PF12705 PD-(D/E)XK nuclease superfamily YPN_2981 PF13361 UvrD-like helicase C-terminal domain YPN_2982 PF16187 Middle or third domain of peptidase_M16 YPN_2982 PF00675 Insulinase (Peptidase family M16) YPN_2982 PF05193 Peptidase M16 inactive domain YPN_2983 PF17946 RecC C-terminal domain YPN_2988 PF00303 Thymidylate synthase YPN_2989 PF01790 Prolipoprotein diacylglyceryl transferase YPN_2990 PF02896 PEP-utilising enzyme, TIM barrel domain YPN_2990 PF00391 PEP-utilising enzyme, mobile domain YPN_2990 PF05524 PEP-utilising enzyme, N-terminal YPN_2990 PF01590 GAF domain YPN_2991 PF00293 NUDIX domain YPN_2992 PF02976 DNA mismatch repair enzyme MutH YPN_2993 PF00248 Aldo/keto reductase family YPN_2995 PF07690 Major Facilitator Superfamily YPN_2996 PF01553 Acyltransferase YPN_2996 PF13193 AMP-binding enzyme C-terminal domain YPN_2996 PF00501 AMP-binding enzyme YPN_2997 PF00501 AMP-binding enzyme YPN_2997 PF13193 AMP-binding enzyme C-terminal domain YPN_2997 PF01553 Acyltransferase YPN_2998 PF00384 Molybdopterin oxidoreductase YPN_2998 PF01568 Molydopterin dinucleotide binding domain YPN_2999 PF00356 Bacterial regulatory proteins, lacI family YPN_3000 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPN_3000 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain YPN_3001 PF03466 LysR substrate binding domain YPN_3001 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_3002 PF07690 Major Facilitator Superfamily YPN_3003 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_3003 PF03466 LysR substrate binding domain YPN_3006 PF00672 HAMP domain YPN_3006 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPN_3006 PF02203 Tar ligand binding domain homologue YPN_3010 PF01478 Type IV leader peptidase family YPN_3010 PF06750 Bacterial Peptidase A24 N-terminal domain YPN_3015 PF02501 Type II secretion system (T2SS), protein I YPN_3015 PF07963 Prokaryotic N-terminal methylation motif YPN_3017 PF07963 Prokaryotic N-terminal methylation motif YPN_3017 PF08334 Type II secretion system (T2SS), protein G YPN_3018 PF00482 Type II secretion system (T2SS), protein F YPN_3020 PF03958 Bacterial type II/III secretion system short domain YPN_3020 PF00263 Bacterial type II and III secretion system protein YPN_3023 PF00484 Carbonic anhydrase YPN_3027 PF09092 Lyase, N terminal YPN_3027 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain YPN_3027 PF02278 Polysaccharide lyase family 8, super-sandwich domain YPN_3027 PF09093 Lyase, catalytic YPN_3029 PF01695 IstB-like ATP binding protein YPN_3030 PF00665 Integrase core domain YPN_3030 PF02796 Helix-turn-helix domain of resolvase YPN_3031 PF01797 Transposase IS200 like YPN_3032 PF00884 Sulfatase YPN_3033 PF08220 DeoR-like helix-turn-helix domain YPN_3033 PF00455 DeoR C terminal sensor domain YPN_3034 PF08013 Tagatose 6 phosphate kinase YPN_3035 PF01380 SIS domain YPN_3036 PF03830 PTS system sorbose subfamily IIB component YPN_3037 PF03609 PTS system sorbose-specific iic component YPN_3038 PF03613 PTS system mannose/fructose/sorbose family IID component YPN_3039 PF03610 PTS system fructose IIA component YPN_3040 PF01979 Amidohydrolase family YPN_3043 PF13186 Iron-sulfur cluster-binding domain YPN_3043 PF04055 Radical SAM superfamily YPN_3044 PF00884 Sulfatase YPN_3046 PF01116 Fructose-bisphosphate aldolase class-II YPN_3048 PF00356 Bacterial regulatory proteins, lacI family YPN_3049 PF07690 Major Facilitator Superfamily YPN_3050 PF16338 Domain of unknown function (DUF4968) YPN_3050 PF17137 Domain of unknown function (DUF5110) YPN_3050 PF13802 Galactose mutarotase-like YPN_3050 PF01055 Glycosyl hydrolases family 31 YPN_3051 PF00356 Bacterial regulatory proteins, lacI family YPN_3052 PF02264 LamB porin YPN_3053 PF02378 Phosphotransferase system, EIIC YPN_3053 PF00367 phosphotransferase system, EIIB YPN_3054 PF08532 Beta-galactosidase trimerisation domain YPN_3054 PF08533 Beta-galactosidase C-terminal domain YPN_3054 PF02449 Beta-galactosidase YPN_3055 PF07745 Glycosyl hydrolase family 53 YPN_3056 PF00528 Binding-protein-dependent transport system inner membrane component YPN_3057 PF00528 Binding-protein-dependent transport system inner membrane component YPN_3058 PF13416 Bacterial extracellular solute-binding protein YPN_3059 PF17912 MalK OB fold domain YPN_3059 PF00005 ABC transporter YPN_3060 PF00005 ABC transporter YPN_3061 PF02653 Branched-chain amino acid transport system / permease component YPN_3062 PF13407 Periplasmic binding protein domain YPN_3064 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family YPN_3065 PF03551 Transcriptional regulator PadR-like family YPN_3080 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA YPN_3081 PF15723 Motility quorum-sensing regulator, toxin of MqsA YPN_3086 PF13356 Arm DNA-binding domain YPN_3086 PF00589 Phage integrase family YPN_3086 PF14659 Phage integrase, N-terminal SAM-like domain YPN_3087 PF00152 tRNA synthetases class II (D, K and N) YPN_3087 PF01336 OB-fold nucleic acid binding domain YPN_3088 PF03462 PCRF domain YPN_3088 PF00472 RF-1 domain YPN_3089 PF01368 DHH family YPN_3089 PF02272 DHHA1 domain YPN_3089 PF17768 RecJ OB domain YPN_3090 PF13098 Thioredoxin-like domain YPN_3090 PF10411 Disulfide bond isomerase protein N-terminus YPN_3091 PF02899 Phage integrase, N-terminal SAM-like domain YPN_3091 PF00589 Phage integrase family YPN_3092 PF00258 Flavodoxin YPN_3093 PF06123 Inner membrane protein CreD YPN_3094 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_3094 PF00512 His Kinase A (phospho-acceptor) domain YPN_3094 PF00672 HAMP domain YPN_3095 PF00072 Response regulator receiver domain YPN_3095 PF00486 Transcriptional regulatory protein, C terminal YPN_3096 PF07254 Membrane-bound toxin component of toxin-antitoxin system YPN_3097 PF03937 Flavinator of succinate dehydrogenase YPN_3098 PF01571 Aminomethyltransferase folate-binding domain YPN_3100 PF03006 Haemolysin-III related YPN_3102 PF03895 YadA-like membrane anchor domain YPN_3102 PF05658 Head domain of trimeric autotransporter adhesin YPN_3102 PF05662 Coiled stalk of trimeric autotransporter adhesin YPN_3102 PF13018 Extended Signal Peptide of Type V secretion system YPN_3104 PF02347 Glycine cleavage system P-protein YPN_3105 PF01597 Glycine cleavage H-protein YPN_3106 PF01571 Aminomethyltransferase folate-binding domain YPN_3106 PF08669 Glycine cleavage T-protein C-terminal barrel domain YPN_3107 PF01494 FAD binding domain YPN_3108 PF01494 FAD binding domain YPN_3109 PF05195 Aminopeptidase P, N-terminal domain YPN_3109 PF00557 Metallopeptidase family M24 YPN_3110 PF03695 Uncharacterised protein family (UPF0149) YPN_3111 PF05164 Cell division protein ZapA YPN_3112 PF01812 5-formyltetrahydrofolate cyclo-ligase family YPN_3113 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPN_3113 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPN_3113 PF01842 ACT domain YPN_3114 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPN_3115 PF03466 LysR substrate binding domain YPN_3115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_3116 PF04402 Protein of unknown function (DUF541) YPN_3117 PF01810 LysE type translocator YPN_3118 PF05552 Conserved TM helix YPN_3118 PF00924 Mechanosensitive ion channel YPN_3119 PF01116 Fructose-bisphosphate aldolase class-II YPN_3120 PF00162 Phosphoglycerate kinase YPN_3121 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPN_3121 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPN_3123 PF02780 Transketolase, C-terminal domain YPN_3123 PF00456 Transketolase, thiamine diphosphate binding domain YPN_3123 PF02779 Transketolase, pyrimidine binding domain YPN_3124 PF01435 Peptidase family M48 YPN_3126 PF17944 Arginine decarboxylase C-terminal helical extension YPN_3126 PF17810 Arginine decarboxylase helical bundle domain YPN_3126 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPN_3127 PF02772 S-adenosylmethionine synthetase, central domain YPN_3127 PF00438 S-adenosylmethionine synthetase, N-terminal domain YPN_3127 PF02773 S-adenosylmethionine synthetase, C-terminal domain YPN_3128 PF10263 SprT-like family YPN_3128 PF17283 SprT-like zinc ribbon domain YPN_3129 PF04231 Endonuclease I YPN_3131 PF04452 RNA methyltransferase YPN_3132 PF02951 Prokaryotic glutathione synthetase, N-terminal domain YPN_3132 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain YPN_3133 PF02622 Uncharacterized ACR, COG1678 YPN_3134 PF03652 Holliday junction resolvase YPN_3135 PF00795 Carbon-nitrogen hydrolase YPN_3136 PF04371 Porphyromonas-type peptidyl-arginine deiminase YPN_3137 PF00437 Type II/IV secretion system protein YPN_3138 PF01168 Alanine racemase, N-terminal domain YPN_3139 PF03807 NADP oxidoreductase coenzyme F420-dependent YPN_3139 PF14748 Pyrroline-5-carboxylate reductase dimerisation YPN_3140 PF02325 YGGT family YPN_3141 PF02594 Uncharacterised ACR, YggU family COG1872 YPN_3142 PF01725 Ham1 family YPN_3143 PF06969 HemN C-terminal domain YPN_3143 PF04055 Radical SAM superfamily YPN_3144 PF16671 Actin cross-linking domain YPN_3144 PF12146 Serine aminopeptidase, S33 YPN_3144 PF11647 Membrane Localization Domain YPN_3144 PF07634 RtxA repeat YPN_3144 PF11713 Peptidase C80 family YPN_3145 PF11101 Protein of unknown function (DUF2884) YPN_3146 PF11101 Protein of unknown function (DUF2884) YPN_3147 PF04960 Glutaminase YPN_3148 PF04320 Protein with unknown function (DUF469) YPN_3149 PF02390 Putative methyltransferase YPN_3150 PF00633 Helix-hairpin-helix motif YPN_3150 PF10576 Iron-sulfur binding domain of endonuclease III YPN_3150 PF00730 HhH-GPD superfamily base excision DNA repair protein YPN_3150 PF14815 NUDIX domain YPN_3151 PF04362 Bacterial Fe(2+) trafficking YPN_3152 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain YPN_3152 PF01464 Transglycosylase SLT domain YPN_3154 PF07715 TonB-dependent Receptor Plug Domain YPN_3155 PF02653 Branched-chain amino acid transport system / permease component YPN_3156 PF00005 ABC transporter YPN_3157 PF13407 Periplasmic binding protein domain YPN_3158 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPN_3158 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPN_3158 PF01276 Orn/Lys/Arg decarboxylase, major domain YPN_3160 PF00589 Phage integrase family YPN_3160 PF02899 Phage integrase, N-terminal SAM-like domain YPN_3162 PF03400 IS1 transposase YPN_3163 PF03811 InsA N-terminal domain YPN_3163 PF12759 InsA C-terminal domain YPN_3167 PF12759 InsA C-terminal domain YPN_3167 PF03811 InsA N-terminal domain YPN_3170 PF07724 AAA domain (Cdc48 subfamily) YPN_3170 PF00004 ATPase family associated with various cellular activities (AAA) YPN_3170 PF10431 C-terminal, D2-small domain, of ClpB protein YPN_3170 PF17871 AAA lid domain YPN_3178 PF03811 InsA N-terminal domain YPN_3178 PF12759 InsA C-terminal domain YPN_3181 PF02517 CPBP intramembrane metalloprotease YPN_3182 PF00765 Autoinducer synthase YPN_3183 PF03472 Autoinducer binding domain YPN_3183 PF00196 Bacterial regulatory proteins, luxR family YPN_3187 PF04183 IucA / IucC family YPN_3187 PF06276 Ferric iron reductase FhuF-like transporter YPN_3188 PF06276 Ferric iron reductase FhuF-like transporter YPN_3188 PF04183 IucA / IucC family YPN_3190 PF04183 IucA / IucC family YPN_3190 PF06276 Ferric iron reductase FhuF-like transporter YPN_3191 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPN_3192 PF00593 TonB dependent receptor YPN_3192 PF07715 TonB-dependent Receptor Plug Domain YPN_3195 PF13276 HTH-like domain YPN_3195 PF00665 Integrase core domain YPN_3195 PF13333 Integrase core domain YPN_3197 PF00356 Bacterial regulatory proteins, lacI family YPN_3198 PF00939 Sodium:sulfate symporter transmembrane region YPN_3201 PF05593 RHS Repeat YPN_3201 PF03527 RHS protein YPN_3203 PF04717 Type VI secretion system, phage-baseplate injector YPN_3204 PF12951 Passenger-associated-transport-repeat YPN_3205 PF12951 Passenger-associated-transport-repeat YPN_3207 PF02447 GntP family permease YPN_3210 PF00005 ABC transporter YPN_3210 PF00664 ABC transporter transmembrane region YPN_3211 PF08021 Siderophore-interacting FAD-binding domain YPN_3211 PF00005 ABC transporter YPN_3211 PF00664 ABC transporter transmembrane region YPN_3211 PF04954 Siderophore-interacting protein YPN_3213 PF00975 Thioesterase domain YPN_3216 PF00501 AMP-binding enzyme YPN_3216 PF08242 Methyltransferase domain YPN_3216 PF00550 Phosphopantetheine attachment site YPN_3216 PF00668 Condensation domain YPN_3217 PF13193 AMP-binding enzyme C-terminal domain YPN_3217 PF00501 AMP-binding enzyme YPN_3217 PF00668 Condensation domain YPN_3218 PF00550 Phosphopantetheine attachment site YPN_3218 PF08242 Methyltransferase domain YPN_3218 PF00668 Condensation domain YPN_3218 PF00501 AMP-binding enzyme YPN_3219 PF01695 IstB-like ATP binding protein YPN_3220 PF00665 Integrase core domain YPN_3220 PF02796 Helix-turn-helix domain of resolvase YPN_3221 PF00550 Phosphopantetheine attachment site YPN_3221 PF02801 Beta-ketoacyl synthase, C-terminal domain YPN_3221 PF16197 Ketoacyl-synthetase C-terminal extension YPN_3221 PF00109 Beta-ketoacyl synthase, N-terminal domain YPN_3221 PF13193 AMP-binding enzyme C-terminal domain YPN_3221 PF00501 AMP-binding enzyme YPN_3221 PF00202 Aminotransferase class-III YPN_3221 PF00668 Condensation domain YPN_3222 PF00593 TonB dependent receptor YPN_3222 PF07715 TonB-dependent Receptor Plug Domain YPN_3223 PF07687 Peptidase dimerisation domain YPN_3223 PF01546 Peptidase family M20/M25/M40 YPN_3224 PF03806 AbgT putative transporter family YPN_3225 PF12468 Type III secretion system leucine rich repeat protein YPN_3225 PF14496 C-terminal novel E3 ligase, LRR-interacting YPN_3226 PF12468 Type III secretion system leucine rich repeat protein YPN_3226 PF14496 C-terminal novel E3 ligase, LRR-interacting YPN_3226 PF14496 C-terminal novel E3 ligase, LRR-interacting YPN_3226 PF12468 Type III secretion system leucine rich repeat protein YPN_3227 PF14496 C-terminal novel E3 ligase, LRR-interacting YPN_3227 PF12468 Type III secretion system leucine rich repeat protein YPN_3228 PF03797 Autotransporter beta-domain YPN_3230 PF07906 ShET2 enterotoxin, N-terminal region YPN_3231 PF00873 AcrB/AcrD/AcrF family YPN_3232 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPN_3232 PF00529 HlyD membrane-fusion protein of T1SS YPN_3234 PF03707 Bacterial signalling protein N terminal repeat YPN_3234 PF13188 PAS domain YPN_3234 PF00563 EAL domain YPN_3234 PF00990 Diguanylate cyclase, GGDEF domain YPN_3235 PF00665 Integrase core domain YPN_3235 PF13276 HTH-like domain YPN_3235 PF13333 Integrase core domain YPN_3237 PF00312 Ribosomal protein S15 YPN_3238 PF16198 tRNA pseudouridylate synthase B C-terminal domain YPN_3238 PF09157 Pseudouridine synthase II TruB, C-terminal YPN_3238 PF01509 TruB family pseudouridylate synthase (N terminal domain) YPN_3239 PF02033 Ribosome-binding factor A YPN_3240 PF00009 Elongation factor Tu GTP binding domain YPN_3240 PF08364 Bacterial translation initiation factor IF-2 associated region YPN_3240 PF11987 Translation-initiation factor 2 YPN_3240 PF03144 Elongation factor Tu domain 2 YPN_3240 PF04760 Translation initiation factor IF-2, N-terminal region YPN_3241 PF08529 NusA N-terminal domain YPN_3241 PF00575 S1 RNA binding domain YPN_3241 PF13184 NusA-like KH domain YPN_3242 PF17384 RimP C-terminal SH3 domain YPN_3242 PF02576 RimP N-terminal domain YPN_3243 PF03840 Preprotein translocase SecG subunit YPN_3244 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPN_3244 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPN_3244 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPN_3244 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPN_3245 PF00809 Pterin binding enzyme YPN_3246 PF17862 AAA+ lid domain YPN_3246 PF01434 Peptidase family M41 YPN_3246 PF06480 FtsH Extracellular YPN_3246 PF00004 ATPase family associated with various cellular activities (AAA) YPN_3247 PF01728 FtsJ-like methyltransferase YPN_3248 PF01985 CRS1 / YhbY (CRM) domain YPN_3249 PF03449 Transcription elongation factor, N-terminal YPN_3249 PF01272 Transcription elongation factor, GreA/GreB, C-term YPN_3250 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family YPN_3251 PF00486 Transcriptional regulatory protein, C terminal YPN_3251 PF00072 Response regulator receiver domain YPN_3252 PF00672 HAMP domain YPN_3252 PF00512 His Kinase A (phospho-acceptor) domain YPN_3252 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_3253 PF01926 50S ribosome-binding GTPase YPN_3253 PF01018 GTP1/OBG YPN_3254 PF00892 EamA-like transporter family YPN_3255 PF01016 Ribosomal L27 protein YPN_3256 PF00829 Ribosomal prokaryotic L21 protein YPN_3257 PF00348 Polyprenyl synthetase YPN_3259 PF13693 Winged helix-turn-helix DNA-binding YPN_3260 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain YPN_3260 PF00056 lactate/malate dehydrogenase, NAD binding domain YPN_3261 PF02863 Arginine repressor, C-terminal domain YPN_3261 PF01316 Arginine repressor, DNA binding domain YPN_3263 PF01225 Mur ligase family, catalytic domain YPN_3263 PF08245 Mur ligase middle domain YPN_3263 PF02875 Mur ligase family, glutamate ligase domain YPN_3264 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain YPN_3265 PF00719 Inorganic pyrophosphatase YPN_3266 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like YPN_3267 PF04357 TamB, inner membrane protein subunit of TAM complex YPN_3268 PF17243 POTRA domain TamA domain 1 YPN_3268 PF07244 Surface antigen variable number repeat YPN_3268 PF01103 Surface antigen YPN_3269 PF01625 Peptide methionine sulfoxide reductase YPN_3270 PF01595 Cyclin M transmembrane N-terminal domain YPN_3270 PF00571 CBS domain YPN_3270 PF03471 Transporter associated domain YPN_3271 PF06526 Protein of unknown function (DUF1107) YPN_3272 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) YPN_3273 PF00459 Inositol monophosphatase family YPN_3274 PF02872 5'-nucleotidase, C-terminal domain YPN_3274 PF00149 Calcineurin-like phosphoesterase YPN_3275 PF01814 Hemerythrin HHE cation binding domain YPN_3275 PF04405 Domain of Unknown function (DUF542) YPN_3276 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPN_3276 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPN_3277 PF08525 Opacity-associated protein A N-terminal motif YPN_3277 PF04225 Opacity-associated protein A LysM-like domain YPN_3279 PF01797 Transposase IS200 like YPN_3280 PF01281 Ribosomal protein L9, N-terminal domain YPN_3280 PF03948 Ribosomal protein L9, C-terminal domain YPN_3281 PF01084 Ribosomal protein S18 YPN_3282 PF00436 Single-strand binding protein family YPN_3283 PF01250 Ribosomal protein S6 YPN_3284 PF00326 Prolyl oligopeptidase family YPN_3285 PF00665 Integrase core domain YPN_3285 PF02796 Helix-turn-helix domain of resolvase YPN_3286 PF01695 IstB-like ATP binding protein YPN_3288 PF07338 Protein of unknown function (DUF1471) YPN_3289 PF02770 Acyl-CoA dehydrogenase, middle domain YPN_3289 PF18158 Adaptive response protein AidB N-terminal domain YPN_3289 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPN_3290 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPN_3290 PF00588 SpoU rRNA Methylase family YPN_3291 PF00575 S1 RNA binding domain YPN_3291 PF00773 RNB domain YPN_3291 PF17876 Cold shock domain YPN_3291 PF08206 Ribonuclease B OB domain YPN_3291 PF08461 Ribonuclease R winged-helix domain YPN_3292 PF02082 Transcriptional regulator YPN_3293 PF00709 Adenylosuccinate synthetase YPN_3294 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) YPN_3295 PF01145 SPFH domain / Band 7 family YPN_3296 PF01145 SPFH domain / Band 7 family YPN_3296 PF12221 Bacterial membrane protein N terminal YPN_3297 PF01926 50S ribosome-binding GTPase YPN_3297 PF13167 GTP-binding GTPase N-terminal YPN_3297 PF16360 GTP-binding GTPase Middle Region YPN_3298 PF17209 Hfq protein YPN_3300 PF08676 MutL C terminal dimerisation domain YPN_3300 PF01119 DNA mismatch repair protein, C-terminal domain YPN_3301 PF01520 N-acetylmuramoyl-L-alanine amidase YPN_3302 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE YPN_3303 PF01256 Carbohydrate kinase YPN_3303 PF03853 YjeF-related protein N-terminus YPN_3304 PF08331 Domain of unknown function (DUF1730) YPN_3305 PF00929 Exonuclease YPN_3306 PF03193 RsgA GTPase YPN_3307 PF02666 Phosphatidylserine decarboxylase YPN_3308 PF00924 Mechanosensitive ion channel YPN_3308 PF12795 Mechanosensitive ion channel porin domain YPN_3308 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPN_3309 PF00152 tRNA synthetases class II (D, K and N) YPN_3311 PF02910 Fumarate reductase flavoprotein C-term YPN_3311 PF00890 FAD binding domain YPN_3312 PF13183 4Fe-4S dicluster domain YPN_3312 PF13085 2Fe-2S iron-sulfur cluster binding domain YPN_3313 PF02300 Fumarate reductase subunit C YPN_3314 PF02313 Fumarate reductase subunit D YPN_3315 PF00893 Small Multidrug Resistance protein YPN_3316 PF09285 Elongation factor P, C-terminal YPN_3316 PF01132 Elongation factor P (EF-P) OB domain YPN_3316 PF08207 Elongation factor P (EF-P) KOW-like domain YPN_3317 PF04055 Radical SAM superfamily YPN_3318 PF13698 Domain of unknown function (DUF4156) YPN_3319 PF00118 TCP-1/cpn60 chaperonin family YPN_3320 PF00166 Chaperonin 10 Kd subunit YPN_3321 PF04186 FxsA cytoplasmic membrane protein YPN_3322 PF10415 Fumarase C C-terminus YPN_3322 PF00206 Lyase YPN_3323 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPN_3324 PF03091 CutA1 divalent ion tolerance protein YPN_3325 PF11412 Disulphide bond corrector protein DsbC YPN_3325 PF02683 Cytochrome C biogenesis protein transmembrane region YPN_3326 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPN_3326 PF00384 Molybdopterin oxidoreductase YPN_3326 PF01568 Molydopterin dinucleotide binding domain YPN_3327 PF12800 4Fe-4S binding domain YPN_3327 PF13247 4Fe-4S dicluster domain YPN_3328 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPN_3328 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPN_3328 PF13247 4Fe-4S dicluster domain YPN_3333 PF03400 IS1 transposase YPN_3335 PF06379 L-rhamnose-proton symport protein (RhaT) YPN_3337 PF02311 AraC-like ligand binding domain YPN_3337 PF12833 Helix-turn-helix domain YPN_3338 PF12833 Helix-turn-helix domain YPN_3338 PF02311 AraC-like ligand binding domain YPN_3340 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPN_3340 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPN_3341 PF06134 L-rhamnose isomerase (RhaA) YPN_3342 PF00596 Class II Aldolase and Adducin N-terminal domain YPN_3343 PF00465 Iron-containing alcohol dehydrogenase YPN_3344 PF05336 L-rhamnose mutarotase YPN_3345 PF00436 Single-strand binding protein family YPN_3346 PF00005 ABC transporter YPN_3346 PF17755 UvrA DNA-binding domain YPN_3346 PF17760 UvrA interaction domain YPN_3347 PF04237 YjbR YPN_3348 PF00155 Aminotransferase class I and II YPN_3349 PF00842 Alanine racemase, C-terminal domain YPN_3349 PF01168 Alanine racemase, N-terminal domain YPN_3350 PF00772 DnaB-like helicase N terminal domain YPN_3350 PF03796 DnaB-like helicase C terminal domain YPN_3351 PF00107 Zinc-binding dehydrogenase YPN_3351 PF08240 Alcohol dehydrogenase GroES-like domain YPN_3352 PF09583 Phage shock protein G (Phageshock_PspG) YPN_3353 PF01207 Dihydrouridine synthase (Dus) YPN_3354 PF01475 Ferric uptake regulator family YPN_3355 PF00717 Peptidase S24-like YPN_3355 PF01726 LexA DNA binding domain YPN_3356 PF01219 Prokaryotic diacylglycerol kinase YPN_3357 PF01553 Acyltransferase YPN_3358 PF01040 UbiA prenyltransferase family YPN_3359 PF04345 Chorismate lyase YPN_3360 PF12951 Passenger-associated-transport-repeat YPN_3361 PF08031 Berberine and berberine like YPN_3361 PF01565 FAD binding domain YPN_3364 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPN_3365 PF13954 PapC N-terminal domain YPN_3365 PF13953 PapC C-terminal domain YPN_3365 PF00577 Outer membrane usher protein YPN_3367 PF02342 TerD domain YPN_3368 PF02342 TerD domain YPN_3369 PF03741 Integral membrane protein TerC family YPN_3370 PF05099 Tellurite resistance protein TerB YPN_3371 PF02342 TerD domain YPN_3372 PF02342 TerD domain YPN_3376 PF11202 Phosphoribosyl transferase (PRTase) YPN_3376 PF15608 PELOTA RNA binding domain YPN_3380 PF04055 Radical SAM superfamily YPN_3381 PF06228 Haem utilisation ChuX/HutX YPN_3382 PF13460 NAD(P)H-binding YPN_3383 PF10636 Hemin uptake protein hemP YPN_3384 PF07715 TonB-dependent Receptor Plug Domain YPN_3384 PF00593 TonB dependent receptor YPN_3385 PF05171 Haemin-degrading HemS.ChuX domain YPN_3386 PF01497 Periplasmic binding protein YPN_3387 PF01032 FecCD transport family YPN_3388 PF00005 ABC transporter YPN_3389 PF01053 Cys/Met metabolism PLP-dependent enzyme YPN_3390 PF03222 Tryptophan/tyrosine permease family YPN_3391 PF03466 LysR substrate binding domain YPN_3391 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_3392 PF01206 Sulfurtransferase TusA YPN_3393 PF04143 Sulphur transport YPN_3394 PF01312 FlhB HrpN YscU SpaS Family YPN_3395 PF01311 Bacterial export proteins, family 1 YPN_3396 PF01313 Bacterial export proteins, family 3 YPN_3397 PF00813 FliP family YPN_3398 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPN_3401 PF18269 T3SS EscN ATPase C-terminal domain YPN_3401 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPN_3402 PF00771 FHIPEP family YPN_3403 PF00771 FHIPEP family YPN_3406 PF01514 Secretory protein of YscJ/FliF family YPN_3409 PF14525 AraC-binding-like domain YPN_3409 PF12833 Helix-turn-helix domain YPN_3413 PF00672 HAMP domain YPN_3413 PF00512 His Kinase A (phospho-acceptor) domain YPN_3413 PF01627 Hpt domain YPN_3413 PF00072 Response regulator receiver domain YPN_3413 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPN_3413 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_3414 PF00072 Response regulator receiver domain YPN_3414 PF00196 Bacterial regulatory proteins, luxR family YPN_3415 PF00375 Sodium:dicarboxylate symporter family YPN_3416 PF16177 Acetyl-coenzyme A synthetase N-terminus YPN_3416 PF00501 AMP-binding enzyme YPN_3416 PF13193 AMP-binding enzyme C-terminal domain YPN_3417 PF04341 Protein of unknown function, DUF485 YPN_3418 PF00474 Sodium:solute symporter family YPN_3420 PF02796 Helix-turn-helix domain of resolvase YPN_3420 PF00665 Integrase core domain YPN_3421 PF01695 IstB-like ATP binding protein YPN_3422 PF13276 HTH-like domain YPN_3422 PF13683 Integrase core domain YPN_3423 PF01527 Transposase YPN_3425 PF02796 Helix-turn-helix domain of resolvase YPN_3425 PF00665 Integrase core domain YPN_3426 PF01695 IstB-like ATP binding protein YPN_3427 PF13409 Glutathione S-transferase, N-terminal domain YPN_3428 PF03466 LysR substrate binding domain YPN_3428 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_3429 PF17954 Quercetinase C-terminal cupin domain YPN_3429 PF02678 Pirin YPN_3430 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPN_3431 PF04348 LppC putative lipoprotein YPN_3432 PF02021 Uncharacterised protein family UPF0102 YPN_3433 PF13580 SIS domain YPN_3434 PF04972 BON domain YPN_3435 PF00912 Transglycosylase YPN_3437 PF00989 PAS fold YPN_3437 PF00512 His Kinase A (phospho-acceptor) domain YPN_3437 PF18415 Histidine kinase receptor ArcB trans-membrane domain YPN_3437 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_3437 PF00072 Response regulator receiver domain YPN_3437 PF01627 Hpt domain YPN_3438 PF16199 Radical_SAM C-terminal domain YPN_3438 PF04055 Radical SAM superfamily YPN_3439 PF01493 GXGXG motif YPN_3439 PF04898 Glutamate synthase central domain YPN_3439 PF00310 Glutamine amidotransferases class-II YPN_3439 PF01645 Conserved region in glutamate synthase YPN_3440 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPN_3440 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPN_3442 PF04386 Stringent starvation protein B YPN_3443 PF00043 Glutathione S-transferase, C-terminal domain YPN_3443 PF02798 Glutathione S-transferase, N-terminal domain YPN_3444 PF00380 Ribosomal protein S9/S16 YPN_3445 PF00572 Ribosomal protein L13 YPN_3446 PF03969 AFG1-like ATPase YPN_3447 PF06295 Protein of unknown function (DUF1043) YPN_3448 PF13180 PDZ domain YPN_3448 PF00595 PDZ domain YPN_3449 PF01797 Transposase IS200 like YPN_3450 PF13180 PDZ domain YPN_3451 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPN_3452 PF01722 BolA-like protein YPN_3453 PF13466 STAS domain YPN_3454 PF05494 MlaC protein YPN_3455 PF02470 MlaD protein YPN_3456 PF02405 Permease MlaE YPN_3457 PF00005 ABC transporter YPN_3458 PF01699 Sodium/calcium exchanger protein YPN_3459 PF00571 CBS domain YPN_3459 PF01380 SIS domain YPN_3461 PF06835 Lipopolysaccharide-assembly, LptC-related YPN_3462 PF03968 OstA-like protein YPN_3463 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPN_3463 PF00005 ABC transporter YPN_3464 PF00309 Sigma-54 factor, Activator interacting domain (AID) YPN_3464 PF04963 Sigma-54 factor, core binding domain YPN_3464 PF04552 Sigma-54, DNA binding domain YPN_3465 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YPN_3466 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YPN_3467 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPN_3468 PF03668 P-loop ATPase protein family YPN_3469 PF00381 PTS HPr component phosphorylation site YPN_3470 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPN_3470 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPN_3471 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain YPN_3471 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain YPN_3472 PF01042 Endoribonuclease L-PSP YPN_3474 PF00356 Bacterial regulatory proteins, lacI family YPN_3475 PF00367 phosphotransferase system, EIIB YPN_3475 PF02378 Phosphotransferase system, EIIC YPN_3476 PF11941 Domain of unknown function (DUF3459) YPN_3476 PF00128 Alpha amylase, catalytic domain YPN_3477 PF14760 Rnk N-terminus YPN_3477 PF01272 Transcription elongation factor, GreA/GreB, C-term YPN_3478 PF07361 Cytochrome b562 YPN_3480 PF01523 Putative modulator of DNA gyrase YPN_3481 PF04751 Protein of unknown function (DUF615) YPN_3482 PF01337 Barstar (barnase inhibitor) YPN_3484 PF00171 Aldehyde dehydrogenase family YPN_3485 PF00171 Aldehyde dehydrogenase family YPN_3486 PF04632 Fusaric acid resistance protein family YPN_3487 PF13533 Biotin-lipoyl like YPN_3488 PF07869 Protein of unknown function (DUF1656) YPN_3489 PF03466 LysR substrate binding domain YPN_3489 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_3490 PF03466 LysR substrate binding domain YPN_3490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_3492 PF18413 Neuraminidase-like domain YPN_3492 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain YPN_3493 PF12255 Insecticide toxin TcdB middle/C-terminal region YPN_3493 PF12256 Insecticide toxin TcdB middle/N-terminal region YPN_3493 PF03534 Salmonella virulence plasmid 65kDa B protein YPN_3497 PF05785 Rho-activating domain of cytotoxic necrotizing factor YPN_3497 PF18807 Tripartite Tc toxins repeat YPN_3498 PF18807 Tripartite Tc toxins repeat YPN_3498 PF14431 YwqJ-like deaminase YPN_3499 PF01523 Putative modulator of DNA gyrase YPN_3500 PF00795 Carbon-nitrogen hydrolase YPN_3501 PF13502 AsmA-like C-terminal region YPN_3501 PF13116 Protein of unknown function YPN_3502 PF10150 Ribonuclease E/G family YPN_3502 PF00575 S1 RNA binding domain YPN_3503 PF02545 Maf-like protein YPN_3504 PF04093 rod shape-determining protein MreD YPN_3505 PF04085 rod shape-determining protein MreC YPN_3507 PF17157 Gammaproteobacterial periplasmic sensor domain YPN_3507 PF00990 Diguanylate cyclase, GGDEF domain YPN_3507 PF00563 EAL domain YPN_3508 PF08240 Alcohol dehydrogenase GroES-like domain YPN_3508 PF00107 Zinc-binding dehydrogenase YPN_3509 PF00174 Oxidoreductase molybdopterin binding domain YPN_3510 PF01794 Ferric reductase like transmembrane component YPN_3511 PF01220 Dehydroquinase class II YPN_3512 PF00364 Biotin-requiring enzyme YPN_3513 PF02785 Biotin carboxylase C-terminal domain YPN_3513 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPN_3513 PF00289 Biotin carboxylase, N-terminal domain YPN_3514 PF06196 Protein of unknown function (DUF997) YPN_3515 PF00474 Sodium:solute symporter family YPN_3517 PF01207 Dihydrouridine synthase (Dus) YPN_3518 PF02954 Bacterial regulatory protein, Fis family YPN_3521 PF07690 Major Facilitator Superfamily YPN_3522 PF02627 Carboxymuconolactone decarboxylase family YPN_3523 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase YPN_3523 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPN_3524 PF00753 Metallo-beta-lactamase superfamily YPN_3525 PF05433 Glycine zipper 2TM domain YPN_3526 PF00313 'Cold-shock' DNA-binding domain YPN_3527 PF00313 'Cold-shock' DNA-binding domain YPN_3528 PF01797 Transposase IS200 like YPN_3531 PF02798 Glutathione S-transferase, N-terminal domain YPN_3532 PF01380 SIS domain YPN_3532 PF00571 CBS domain YPN_3533 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPN_3533 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPN_3535 PF02653 Branched-chain amino acid transport system / permease component YPN_3536 PF00005 ABC transporter YPN_3538 PF03279 Bacterial lipid A biosynthesis acyltransferase YPN_3540 PF00999 Sodium/hydrogen exchanger family YPN_3541 PF00860 Permease family YPN_3542 PF04221 RelB antitoxin YPN_3543 PF00005 ABC transporter YPN_3544 PF00528 Binding-protein-dependent transport system inner membrane component YPN_3545 PF00296 Luciferase-like monooxygenase YPN_3546 PF09084 NMT1/THI5 like YPN_3547 PF03358 NADPH-dependent FMN reductase YPN_3549 PF00294 pfkB family carbohydrate kinase YPN_3550 PF05025 RbsD / FucU transport protein family YPN_3551 PF12833 Helix-turn-helix domain YPN_3551 PF02311 AraC-like ligand binding domain YPN_3552 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPN_3552 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPN_3555 PF05593 RHS Repeat YPN_3555 PF03527 RHS protein YPN_3557 PF04717 Type VI secretion system, phage-baseplate injector YPN_3563 PF03527 RHS protein YPN_3563 PF14220 Domain of unknown function (DUF4329) YPN_3563 PF05593 RHS Repeat YPN_3566 PF04717 Type VI secretion system, phage-baseplate injector YPN_3573 PF00004 ATPase family associated with various cellular activities (AAA) YPN_3573 PF07724 AAA domain (Cdc48 subfamily) YPN_3573 PF17871 AAA lid domain YPN_3573 PF10431 C-terminal, D2-small domain, of ClpB protein YPN_3581 PF13276 HTH-like domain YPN_3581 PF00665 Integrase core domain YPN_3581 PF13333 Integrase core domain YPN_3585 PF16901 C-terminal domain of alpha-glycerophosphate oxidase YPN_3585 PF01266 FAD dependent oxidoreductase YPN_3586 PF00343 Carbohydrate phosphorylase YPN_3587 PF00534 Glycosyl transferases group 1 YPN_3587 PF08323 Starch synthase catalytic domain YPN_3588 PF00483 Nucleotidyl transferase YPN_3589 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPN_3589 PF00128 Alpha amylase, catalytic domain YPN_3589 PF18390 Glycogen debranching enzyme C-terminal domain YPN_3590 PF00128 Alpha amylase, catalytic domain YPN_3590 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPN_3590 PF02806 Alpha amylase, C-terminal all-beta domain YPN_3591 PF06580 Histidine kinase YPN_3591 PF07694 5TMR of 5TMR-LYT YPN_3592 PF02369 Bacterial Ig-like domain (group 1) YPN_3592 PF11924 Inverse autotransporter, beta-domain YPN_3592 PF07979 Intimin C-type lectin domain YPN_3592 PF09134 Invasin, domain 3 YPN_3597 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPN_3597 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPN_3598 PF01914 MarC family integral membrane protein YPN_3602 PF01202 Shikimate kinase YPN_3603 PF02447 GntP family permease YPN_3604 PF00356 Bacterial regulatory proteins, lacI family YPN_3604 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPN_3605 PF02678 Pirin YPN_3605 PF17954 Quercetinase C-terminal cupin domain YPN_3607 PF00486 Transcriptional regulatory protein, C terminal YPN_3607 PF00072 Response regulator receiver domain YPN_3609 PF01116 Fructose-bisphosphate aldolase class-II YPN_3611 PF13407 Periplasmic binding protein domain YPN_3612 PF02653 Branched-chain amino acid transport system / permease component YPN_3613 PF00005 ABC transporter YPN_3614 PF00072 Response regulator receiver domain YPN_3614 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_3614 PF13188 PAS domain YPN_3614 PF08448 PAS fold YPN_3614 PF00512 His Kinase A (phospho-acceptor) domain YPN_3616 PF01384 Phosphate transporter family YPN_3618 PF10625 Universal stress protein B (UspB) YPN_3619 PF00582 Universal stress protein family YPN_3620 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YPN_3620 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YPN_3621 PF00413 Matrixin YPN_3621 PF08548 Peptidase M10 serralysin C terminal YPN_3621 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) YPN_3622 PF04445 Putative SAM-dependent methyltransferase YPN_3623 PF01432 Peptidase family M3 YPN_3625 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ YPN_3626 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPN_3626 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPN_3627 PF05651 Putative sugar diacid recognition YPN_3627 PF13556 PucR C-terminal helix-turn-helix domain YPN_3627 PF17853 GGDEF-like domain YPN_3629 PF02447 GntP family permease YPN_3630 PF02595 Glycerate kinase family YPN_3635 PF03631 Virulence factor BrkB YPN_3636 PF02611 CDP-diacylglycerol pyrophosphatase YPN_3637 PF05170 AsmA family YPN_3638 PF00563 EAL domain YPN_3639 PF01361 Tautomerase enzyme YPN_3640 PF00294 pfkB family carbohydrate kinase YPN_3641 PF00675 Insulinase (Peptidase family M16) YPN_3641 PF05193 Peptidase M16 inactive domain YPN_3642 PF00375 Sodium:dicarboxylate symporter family YPN_3644 PF06917 Periplasmic pectate lyase YPN_3645 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPN_3646 PF00563 EAL domain YPN_3646 PF00672 HAMP domain YPN_3646 PF00990 Diguanylate cyclase, GGDEF domain YPN_3646 PF17154 Gammaproteobacterial periplasmic sensor domain YPN_3647 PF01270 Glycosyl hydrolases family 8 YPN_3648 PF00005 ABC transporter YPN_3648 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPN_3649 PF00005 ABC transporter YPN_3649 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPN_3650 PF12911 N-terminal TM domain of oligopeptide transport permease C YPN_3650 PF00528 Binding-protein-dependent transport system inner membrane component YPN_3651 PF00528 Binding-protein-dependent transport system inner membrane component YPN_3652 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPN_3653 PF08479 POTRA domain, ShlB-type YPN_3653 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPN_3653 PF17287 POTRA domain YPN_3654 PF05860 haemagglutination activity domain YPN_3654 PF13332 Hemagglutinin repeat YPN_3654 PF05594 Haemagluttinin repeat YPN_3654 PF04829 Pre-toxin domain with VENN motif YPN_3655 PF07690 Major Facilitator Superfamily YPN_3656 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_3656 PF07730 Histidine kinase YPN_3656 PF05231 MASE1 YPN_3657 PF01695 IstB-like ATP binding protein YPN_3658 PF02796 Helix-turn-helix domain of resolvase YPN_3658 PF00665 Integrase core domain YPN_3659 PF07730 Histidine kinase YPN_3659 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_3659 PF05231 MASE1 YPN_3660 PF00072 Response regulator receiver domain YPN_3660 PF00196 Bacterial regulatory proteins, luxR family YPN_3661 PF08019 Phosphoethanolamine transferase EptA/EptB YPN_3661 PF00884 Sulfatase YPN_3662 PF12146 Serine aminopeptidase, S33 YPN_3663 PF00324 Amino acid permease YPN_3664 PF00221 Aromatic amino acid lyase YPN_3665 PF17392 Urocanase C-terminal domain YPN_3665 PF01175 Urocanase Rossmann-like domain YPN_3665 PF17391 Urocanase N-terminal domain YPN_3666 PF00291 Pyridoxal-phosphate dependent enzyme YPN_3667 PF00156 Phosphoribosyl transferase domain YPN_3670 PF01497 Periplasmic binding protein YPN_3671 PF01032 FecCD transport family YPN_3672 PF01032 FecCD transport family YPN_3673 PF00005 ABC transporter YPN_3677 PF13737 Transposase DDE domain YPN_3678 PF13737 Transposase DDE domain YPN_3680 PF13356 Arm DNA-binding domain YPN_3680 PF00589 Phage integrase family YPN_3680 PF14659 Phage integrase, N-terminal SAM-like domain YPN_3681 PF12833 Helix-turn-helix domain YPN_3682 PF02653 Branched-chain amino acid transport system / permease component YPN_3683 PF00005 ABC transporter YPN_3684 PF13407 Periplasmic binding protein domain YPN_3686 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPN_3686 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPN_3688 PF02753 Pili assembly chaperone PapD, C-terminal domain YPN_3688 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPN_3689 PF13953 PapC C-terminal domain YPN_3689 PF13954 PapC N-terminal domain YPN_3689 PF00577 Outer membrane usher protein YPN_3690 PF13953 PapC C-terminal domain YPN_3690 PF13954 PapC N-terminal domain YPN_3690 PF00577 Outer membrane usher protein YPN_3691 PF00419 Fimbrial protein YPN_3692 PF01757 Acyltransferase family YPN_3694 PF13333 Integrase core domain YPN_3694 PF00665 Integrase core domain YPN_3694 PF13276 HTH-like domain YPN_3695 PF07690 Major Facilitator Superfamily YPN_3699 PF13700 Domain of unknown function (DUF4158) YPN_3699 PF01526 Tn3 transposase DDE domain YPN_3700 PF09107 Elongation factor SelB, winged helix YPN_3700 PF09106 Elongation factor SelB, winged helix YPN_3700 PF03144 Elongation factor Tu domain 2 YPN_3700 PF00009 Elongation factor Tu GTP binding domain YPN_3701 PF12390 Selenocysteine synthase N terminal YPN_3701 PF03841 L-seryl-tRNA selenium transferase YPN_3702 PF04216 Protein involved in formate dehydrogenase formation YPN_3703 PF01292 Prokaryotic cytochrome b561 YPN_3704 PF09163 Formate dehydrogenase N, transmembrane YPN_3704 PF13247 4Fe-4S dicluster domain YPN_3705 PF00384 Molybdopterin oxidoreductase YPN_3705 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPN_3705 PF01568 Molydopterin dinucleotide binding domain YPN_3706 PF01568 Molydopterin dinucleotide binding domain YPN_3706 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPN_3706 PF00384 Molybdopterin oxidoreductase YPN_3707 PF02634 FdhD/NarQ family YPN_3708 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPN_3708 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPN_3709 PF02203 Tar ligand binding domain homologue YPN_3709 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPN_3709 PF00672 HAMP domain YPN_3712 PF10928 Protein of unknown function (DUF2810) YPN_3713 PF05068 Mannitol repressor YPN_3714 PF08125 Mannitol dehydrogenase C-terminal domain YPN_3714 PF01232 Mannitol dehydrogenase Rossmann domain YPN_3715 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPN_3715 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPN_3715 PF02378 Phosphotransferase system, EIIC YPN_3716 PF11254 Protein of unknown function (DUF3053) YPN_3717 PF02092 Glycyl-tRNA synthetase beta subunit YPN_3717 PF05746 DALR anticodon binding domain YPN_3718 PF02091 Glycyl-tRNA synthetase alpha subunit YPN_3719 PF03352 Methyladenine glycosylase YPN_3721 PF13488 Glycine zipper YPN_3721 PF00691 OmpA family YPN_3723 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPN_3723 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPN_3724 PF00128 Alpha amylase, catalytic domain YPN_3726 PF00155 Aminotransferase class I and II YPN_3727 PF06826 Predicted Permease Membrane Region YPN_3727 PF02080 TrkA-C domain YPN_3728 PF00011 Hsp20/alpha crystallin family YPN_3729 PF00011 Hsp20/alpha crystallin family YPN_3730 PF07119 Protein of unknown function (DUF1375) YPN_3731 PF07676 WD40-like Beta Propeller Repeat YPN_3731 PF12566 Protein of unknown function (DUF3748) YPN_3732 PF07676 WD40-like Beta Propeller Repeat YPN_3732 PF12566 Protein of unknown function (DUF3748) YPN_3733 PF13291 ACT domain YPN_3733 PF00291 Pyridoxal-phosphate dependent enzyme YPN_3734 PF02423 Ornithine cyclodeaminase/mu-crystallin family YPN_3736 PF13333 Integrase core domain YPN_3736 PF13276 HTH-like domain YPN_3736 PF00665 Integrase core domain YPN_3737 PF02219 Methylenetetrahydrofolate reductase YPN_3738 PF03447 Homoserine dehydrogenase, NAD binding domain YPN_3738 PF00742 Homoserine dehydrogenase YPN_3738 PF00696 Amino acid kinase family YPN_3739 PF01053 Cys/Met metabolism PLP-dependent enzyme YPN_3740 PF01053 Cys/Met metabolism PLP-dependent enzyme YPN_3741 PF01340 Met Apo-repressor, MetJ YPN_3742 PF05360 yiaA/B two helix domain YPN_3743 PF01197 Ribosomal protein L31 YPN_3744 PF17764 3′ DNA-binding domain (3′BD) YPN_3744 PF18074 Primosomal protein N C-terminal domain YPN_3744 PF00271 Helicase conserved C-terminal domain YPN_3744 PF00270 DEAD/DEAH box helicase YPN_3744 PF18319 PriA DNA helicase Cys-rich region (CRR) domain YPN_3745 PF00356 Bacterial regulatory proteins, lacI family YPN_3746 PF05036 Sporulation related domain YPN_3747 PF00227 Proteasome subunit YPN_3748 PF07724 AAA domain (Cdc48 subfamily) YPN_3748 PF00004 ATPase family associated with various cellular activities (AAA) YPN_3748 PF10431 C-terminal, D2-small domain, of ClpB protein YPN_3749 PF01040 UbiA prenyltransferase family YPN_3750 PF03737 Aldolase/RraA YPN_3753 PF00529 HlyD membrane-fusion protein of T1SS YPN_3753 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPN_3754 PF03412 Peptidase C39 family YPN_3754 PF00005 ABC transporter YPN_3754 PF00664 ABC transporter transmembrane region YPN_3756 PF06005 Cell division protein ZapB YPN_3757 PF00230 Major intrinsic protein YPN_3758 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPN_3758 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPN_3759 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded YPN_3760 PF00970 Oxidoreductase FAD-binding domain YPN_3760 PF00175 Oxidoreductase NAD-binding domain YPN_3761 PF05656 Protein of unknown function (DUF805) YPN_3762 PF07305 Protein of unknown function (DUF1454) YPN_3763 PF00121 Triosephosphate isomerase YPN_3764 PF03466 LysR substrate binding domain YPN_3764 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_3765 PF02585 GlcNAc-PI de-N-acetylase YPN_3766 PF03737 Aldolase/RraA YPN_3767 PF00939 Sodium:sulfate symporter transmembrane region YPN_3770 PF00365 Phosphofructokinase YPN_3771 PF16916 Dimerisation domain of Zinc Transporter YPN_3771 PF01545 Cation efflux family YPN_3773 PF04754 Putative transposase, YhgA-like YPN_3775 PF02899 Phage integrase, N-terminal SAM-like domain YPN_3775 PF00589 Phage integrase family YPN_3776 PF07813 LTXXQ motif family protein YPN_3777 PF00072 Response regulator receiver domain YPN_3777 PF00486 Transcriptional regulatory protein, C terminal YPN_3778 PF00512 His Kinase A (phospho-acceptor) domain YPN_3778 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_3778 PF00672 HAMP domain YPN_3778 PF16527 Two-component sensor protein CpxA, periplasmic domain YPN_3779 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPN_3779 PF12833 Helix-turn-helix domain YPN_3779 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPN_3779 PF02805 Metal binding domain of Ada YPN_3780 PF00588 SpoU rRNA Methylase family YPN_3781 PF00132 Bacterial transferase hexapeptide (six repeats) YPN_3781 PF06426 Serine acetyltransferase, N-terminal YPN_3782 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YPN_3782 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus YPN_3783 PF02556 Preprotein translocase subunit SecB YPN_3784 PF00462 Glutaredoxin YPN_3785 PF00581 Rhodanese-like domain YPN_3786 PF01676 Metalloenzyme superfamily YPN_3786 PF06415 BPG-independent PGAM N-terminus (iPGM_N) YPN_3787 PF01551 Peptidase family M23 YPN_3788 PF04748 Divergent polysaccharide deacetylase YPN_3789 PF04748 Divergent polysaccharide deacetylase YPN_3790 PF00107 Zinc-binding dehydrogenase YPN_3790 PF08240 Alcohol dehydrogenase GroES-like domain YPN_3791 PF00155 Aminotransferase class I and II YPN_3792 PF01370 NAD dependent epimerase/dehydratase family YPN_3793 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPN_3794 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPN_3795 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YPN_3796 PF00535 Glycosyl transferase family 2 YPN_3797 PF01467 Cytidylyltransferase-like YPN_3798 PF06827 Zinc finger found in FPG and IleRS YPN_3798 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain YPN_3798 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain YPN_3799 PF00471 Ribosomal protein L33 YPN_3800 PF00830 Ribosomal L28 family YPN_3801 PF04002 RadC-like JAB domain YPN_3802 PF02441 Flavoprotein YPN_3802 PF04127 DNA / pantothenate metabolism flavoprotein YPN_3803 PF00692 dUTPase YPN_3804 PF00440 Bacterial regulatory proteins, tetR family YPN_3805 PF00156 Phosphoribosyl transferase domain YPN_3806 PF01138 3' exoribonuclease family, domain 1 YPN_3806 PF03725 3' exoribonuclease family, domain 2 YPN_3807 PF03755 YicC-like family, N-terminal region YPN_3807 PF08340 Domain of unknown function (DUF1732) YPN_3808 PF03458 UPF0126 domain YPN_3809 PF03120 NAD-dependent DNA ligase OB-fold domain YPN_3809 PF01653 NAD-dependent DNA ligase adenylation domain YPN_3810 PF00625 Guanylate kinase YPN_3811 PF01192 RNA polymerase Rpb6 YPN_3812 PF04607 Region found in RelA / SpoT proteins YPN_3812 PF13291 ACT domain YPN_3812 PF02824 TGS domain YPN_3813 PF00588 SpoU rRNA Methylase family YPN_3813 PF12105 SpoU, rRNA methylase, C-terminal YPN_3814 PF00270 DEAD/DEAH box helicase YPN_3814 PF00271 Helicase conserved C-terminal domain YPN_3814 PF17191 RecG wedge domain YPN_3815 PF03616 Sodium/glutamate symporter YPN_3816 PF00860 Permease family YPN_3817 PF05170 AsmA family YPN_3818 PF09500 Putative thioesterase (yiiD_Cterm) YPN_3818 PF00583 Acetyltransferase (GNAT) family YPN_3819 PF02796 Helix-turn-helix domain of resolvase YPN_3819 PF00665 Integrase core domain YPN_3820 PF01695 IstB-like ATP binding protein YPN_3821 PF00132 Bacterial transferase hexapeptide (six repeats) YPN_3822 PF18317 Shikimate 5'-dehydrogenase C-terminal domain YPN_3822 PF08501 Shikimate dehydrogenase substrate binding domain YPN_3822 PF01488 Shikimate / quinate 5-dehydrogenase YPN_3823 PF01300 Telomere recombination YPN_3824 PF01396 Topoisomerase DNA binding C4 zinc finger YPN_3825 PF04361 Protein of unknown function (DUF494) YPN_3826 PF02481 DNA recombination-mediator protein A YPN_3826 PF17782 DprA winged helix domain YPN_3827 PF01327 Polypeptide deformylase YPN_3828 PF02911 Formyl transferase, C-terminal domain YPN_3828 PF00551 Formyl transferase YPN_3829 PF01189 16S rRNA methyltransferase RsmB/F YPN_3829 PF01029 NusB family YPN_3830 PF02254 TrkA-N domain YPN_3830 PF02080 TrkA-C domain YPN_3831 PF01741 Large-conductance mechanosensitive channel, MscL YPN_3832 PF03889 Alternative ribosome-rescue factor A YPN_3833 PF13411 MerR HTH family regulatory protein YPN_3834 PF01196 Ribosomal protein L17 YPN_3835 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain YPN_3835 PF01000 RNA polymerase Rpb3/RpoA insert domain YPN_3835 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain YPN_3836 PF00163 Ribosomal protein S4/S9 N-terminal domain YPN_3836 PF01479 S4 domain YPN_3837 PF00411 Ribosomal protein S11 YPN_3838 PF00416 Ribosomal protein S13/S18 YPN_3839 PF00344 SecY translocase YPN_3840 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A YPN_3841 PF00327 Ribosomal protein L30p/L7e YPN_3842 PF00333 Ribosomal protein S5, N-terminal domain YPN_3842 PF03719 Ribosomal protein S5, C-terminal domain YPN_3843 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast YPN_3844 PF00347 Ribosomal protein L6 YPN_3845 PF00410 Ribosomal protein S8 YPN_3846 PF00253 Ribosomal protein S14p/S29e YPN_3847 PF00673 ribosomal L5P family C-terminus YPN_3847 PF00281 Ribosomal protein L5 YPN_3848 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 YPN_3848 PF00467 KOW motif YPN_3849 PF00238 Ribosomal protein L14p/L23e YPN_3850 PF00366 Ribosomal protein S17 YPN_3851 PF00831 Ribosomal L29 protein YPN_3852 PF00252 Ribosomal protein L16p/L10e YPN_3853 PF07650 KH domain YPN_3853 PF00189 Ribosomal protein S3, C-terminal domain YPN_3854 PF00237 Ribosomal protein L22p/L17e YPN_3855 PF00203 Ribosomal protein S19 YPN_3856 PF00181 Ribosomal Proteins L2, RNA binding domain YPN_3856 PF03947 Ribosomal Proteins L2, C-terminal domain YPN_3857 PF00276 Ribosomal protein L23 YPN_3858 PF00573 Ribosomal protein L4/L1 family YPN_3859 PF00297 Ribosomal protein L3 YPN_3860 PF00338 Ribosomal protein S10p/S20e YPN_3861 PF00210 Ferritin-like domain YPN_3862 PF04324 BFD-like [2Fe-2S] binding domain YPN_3863 PF01797 Transposase IS200 like YPN_3864 PF00009 Elongation factor Tu GTP binding domain YPN_3864 PF03144 Elongation factor Tu domain 2 YPN_3864 PF03143 Elongation factor Tu C-terminal domain YPN_3865 PF03144 Elongation factor Tu domain 2 YPN_3865 PF00009 Elongation factor Tu GTP binding domain YPN_3865 PF03764 Elongation factor G, domain IV YPN_3865 PF14492 Elongation Factor G, domain II YPN_3865 PF00679 Elongation factor G C-terminus YPN_3866 PF00177 Ribosomal protein S7p/S5e YPN_3867 PF00164 Ribosomal protein S12/S23 YPN_3868 PF04077 DsrH like protein YPN_3869 PF02635 DsrE/DsrF-like family YPN_3870 PF02635 DsrE/DsrF-like family YPN_3871 PF13309 HTH domain YPN_3871 PF08348 YheO-like PAS domain YPN_3872 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPN_3872 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPN_3873 PF04102 SlyX YPN_3874 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPN_3875 PF09526 Probable metal-binding protein (DUF2387) YPN_3876 PF00999 Sodium/hydrogen exchanger family YPN_3876 PF02254 TrkA-N domain YPN_3877 PF02525 Flavodoxin-like fold YPN_3878 PF12848 ABC transporter YPN_3878 PF00005 ABC transporter YPN_3879 PF12848 ABC transporter YPN_3879 PF00005 ABC transporter YPN_3880 PF00535 Glycosyl transferase family 2 YPN_3882 PF02668 Taurine catabolism dioxygenase TauD, TfdA family YPN_3883 PF00528 Binding-protein-dependent transport system inner membrane component YPN_3884 PF00005 ABC transporter YPN_3885 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPN_3886 PF01810 LysE type translocator YPN_3887 PF00561 alpha/beta hydrolase fold YPN_3888 PF06794 Uncharacterised protein family (UPF0270) YPN_3889 PF00485 Phosphoribulokinase / Uridine kinase family YPN_3891 PF02566 OsmC-like protein YPN_3892 PF00027 Cyclic nucleotide-binding domain YPN_3892 PF13545 Crp-like helix-turn-helix domain YPN_3893 PF12805 FUSC-like inner membrane protein yccS YPN_3894 PF00202 Aminotransferase class-III YPN_3895 PF00117 Glutamine amidotransferase class-I YPN_3896 PF05872 Bacterial protein of unknown function (DUF853) YPN_3897 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPN_3898 PF11975 Family 4 glycosyl hydrolase C-terminal domain YPN_3898 PF02056 Family 4 glycosyl hydrolase YPN_3899 PF00356 Bacterial regulatory proteins, lacI family YPN_3901 PF07690 Major Facilitator Superfamily YPN_3902 PF07969 Amidohydrolase family YPN_3903 PF04324 BFD-like [2Fe-2S] binding domain YPN_3903 PF18267 Rubredoxin NAD+ reductase C-terminal domain YPN_3903 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPN_3903 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPN_3903 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPN_3904 PF13806 Rieske-like [2Fe-2S] domain YPN_3906 PF01226 Formate/nitrite transporter YPN_3907 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPN_3907 PF10414 Sirohaem synthase dimerisation region YPN_3907 PF14824 Sirohaem biosynthesis protein central YPN_3908 PF00579 tRNA synthetases class I (W and Y) YPN_3909 PF13419 Haloacid dehalogenase-like hydrolase YPN_3910 PF00834 Ribulose-phosphate 3 epimerase family YPN_3911 PF02086 D12 class N6 adenine-specific DNA methyltransferase YPN_3912 PF05036 Sporulation related domain YPN_3913 PF01761 3-dehydroquinate synthase YPN_3914 PF01202 Shikimate kinase YPN_3915 PF03958 Bacterial type II/III secretion system short domain YPN_3915 PF00263 Bacterial type II and III secretion system protein YPN_3921 PF00905 Penicillin binding protein transpeptidase domain YPN_3921 PF00912 Transglycosylase YPN_3921 PF17092 Penicillin-binding protein OB-like domain YPN_3922 PF00293 NUDIX domain YPN_3923 PF07095 Intracellular growth attenuator protein IgaA YPN_3924 PF13419 Haloacid dehalogenase-like hydrolase YPN_3925 PF01479 S4 domain YPN_3926 PF01430 Hsp33 protein YPN_3927 PF01293 Phosphoenolpyruvate carboxykinase YPN_3928 PF00512 His Kinase A (phospho-acceptor) domain YPN_3928 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_3928 PF00672 HAMP domain YPN_3929 PF00486 Transcriptional regulatory protein, C terminal YPN_3929 PF00072 Response regulator receiver domain YPN_3930 PF01272 Transcription elongation factor, GreA/GreB, C-term YPN_3930 PF03449 Transcription elongation factor, N-terminal YPN_3931 PF17674 HHH domain YPN_3931 PF16921 Tex protein YqgF-like domain YPN_3931 PF00575 S1 RNA binding domain YPN_3931 PF09371 Tex-like protein N-terminal domain YPN_3932 PF04023 FeoA domain YPN_3933 PF07670 Nucleoside recognition YPN_3933 PF17910 FeoB cytosolic helical domain YPN_3933 PF07664 Ferrous iron transport protein B C terminus YPN_3933 PF02421 Ferrous iron transport protein B YPN_3934 PF09012 FeoC like transcriptional regulator YPN_3935 PF07338 Protein of unknown function (DUF1471) YPN_3936 PF00561 alpha/beta hydrolase fold YPN_3937 PF00156 Phosphoribosyl transferase domain YPN_3938 PF01106 NifU-like domain YPN_3938 PF01521 Iron-sulphur cluster biosynthesis YPN_3939 PF02446 4-alpha-glucanotransferase YPN_3940 PF00343 Carbohydrate phosphorylase YPN_3941 PF00343 Carbohydrate phosphorylase YPN_3942 PF00196 Bacterial regulatory proteins, luxR family YPN_3942 PF17874 MalT-like TPR region YPN_3943 PF01695 IstB-like ATP binding protein YPN_3944 PF02796 Helix-turn-helix domain of resolvase YPN_3944 PF00665 Integrase core domain YPN_3945 PF00196 Bacterial regulatory proteins, luxR family YPN_3945 PF17874 MalT-like TPR region YPN_3946 PF00581 Rhodanese-like domain YPN_3947 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease YPN_3947 PF01694 Rhomboid family YPN_3948 PF00455 DeoR C terminal sensor domain YPN_3948 PF08220 DeoR-like helix-turn-helix domain YPN_3950 PF13333 Integrase core domain YPN_3950 PF00665 Integrase core domain YPN_3950 PF13276 HTH-like domain YPN_3952 PF00204 DNA gyrase B YPN_3952 PF18053 DNA gyrase B subunit insert domain YPN_3952 PF00986 DNA gyrase B subunit, carboxyl terminus YPN_3952 PF01751 Toprim domain YPN_3952 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_3953 PF02463 RecF/RecN/SMC N terminal domain YPN_3954 PF02768 DNA polymerase III beta subunit, C-terminal domain YPN_3954 PF02767 DNA polymerase III beta subunit, central domain YPN_3954 PF00712 DNA polymerase III beta subunit, N-terminal domain YPN_3955 PF00308 Bacterial dnaA protein YPN_3955 PF08299 Bacterial dnaA protein helix-turn-helix YPN_3955 PF11638 DnaA N-terminal domain YPN_3956 PF00468 Ribosomal protein L34 YPN_3957 PF00825 Ribonuclease P YPN_3958 PF01809 Putative membrane protein insertion efficiency factor YPN_3959 PF14849 YidC periplasmic domain YPN_3959 PF02096 60Kd inner membrane protein YPN_3960 PF01926 50S ribosome-binding GTPase YPN_3960 PF12631 MnmE helical domain YPN_3960 PF10396 GTP-binding protein TrmE N-terminus YPN_3961 PF12241 Trans-2-enoyl-CoA reductase catalytic region YPN_3961 PF07055 Enoyl reductase FAD binding domain YPN_3961 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase YPN_3964 PF00860 Permease family YPN_3965 PF13419 Haloacid dehalogenase-like hydrolase YPN_3966 PF00528 Binding-protein-dependent transport system inner membrane component YPN_3967 PF00528 Binding-protein-dependent transport system inner membrane component YPN_3968 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPN_3970 PF01895 PhoU domain YPN_3971 PF00005 ABC transporter YPN_3972 PF00528 Binding-protein-dependent transport system inner membrane component YPN_3973 PF00528 Binding-protein-dependent transport system inner membrane component YPN_3974 PF12849 PBP superfamily domain YPN_3975 PF01380 SIS domain YPN_3976 PF12804 MobA-like NTP transferase domain YPN_3976 PF00132 Bacterial transferase hexapeptide (six repeats) YPN_3977 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain YPN_3977 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain YPN_3978 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPN_3978 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPN_3979 PF00231 ATP synthase YPN_3980 PF00306 ATP synthase alpha/beta chain, C terminal domain YPN_3980 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPN_3980 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPN_3981 PF00213 ATP synthase delta (OSCP) subunit YPN_3982 PF00430 ATP synthase B/B' CF(0) YPN_3983 PF00137 ATP synthase subunit C YPN_3984 PF00119 ATP synthase A chain YPN_3985 PF03899 ATP synthase I chain YPN_3986 PF02527 rRNA small subunit methyltransferase G YPN_3987 PF13932 GidA associated domain YPN_3987 PF01134 Glucose inhibited division protein A YPN_MT0001 PF02796 Helix-turn-helix domain of resolvase YPN_MT0001 PF00665 Integrase core domain YPN_MT0002 PF01695 IstB-like ATP binding protein YPN_MT0003 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YPN_MT0004 PF08400 Prophage tail fibre N-terminal YPN_MT0004 PF07484 Phage Tail Collar Domain YPN_MT0004 PF03335 Phage tail fibre repeat YPN_MT0004 PF07484 Phage Tail Collar Domain YPN_MT0004 PF03335 Phage tail fibre repeat YPN_MT0004 PF08400 Prophage tail fibre N-terminal YPN_MT0030 PF03412 Peptidase C39 family YPN_MT0030 PF00005 ABC transporter YPN_MT0030 PF00664 ABC transporter transmembrane region YPN_MT0031 PF02195 ParB-like nuclease domain YPN_MT0031 PF17762 HTH domain found in ParB protein YPN_MT0032 PF17762 HTH domain found in ParB protein YPN_MT0032 PF02195 ParB-like nuclease domain YPN_MT0033 PF00271 Helicase conserved C-terminal domain YPN_MT0033 PF00270 DEAD/DEAH box helicase YPN_MT0033 PF17191 RecG wedge domain YPN_MT0046 PF01051 Initiator Replication protein YPN_MT0052 PF00154 recA bacterial DNA recombination protein YPN_MT0054 PF01367 5'-3' exonuclease, C-terminal SAM fold YPN_MT0054 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPN_MT0059 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YPN_MT0059 PF07733 Bacterial DNA polymerase III alpha NTPase domain YPN_MT0059 PF14579 Helix-hairpin-helix motif YPN_MT0059 PF02811 PHP domain YPN_MT0061 PF06213 Cobalamin biosynthesis protein CobT YPN_MT0061 PF11775 Cobalamin biosynthesis protein CobT VWA domain YPN_MT0065 PF00577 Outer membrane usher protein YPN_MT0065 PF13954 PapC N-terminal domain YPN_MT0065 PF13953 PapC C-terminal domain YPN_MT0066 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPN_MT0066 PF02753 Pili assembly chaperone PapD, C-terminal domain YPN_MT0070 PF01695 IstB-like ATP binding protein YPN_MT0071 PF02796 Helix-turn-helix domain of resolvase YPN_MT0071 PF00665 Integrase core domain YPN_MT0075 PF00872 Transposase, Mutator family YPN_MT0076 PF02371 Transposase IS116/IS110/IS902 family YPN_MT0076 PF01548 Transposase YPN_MT0077 PF04754 Putative transposase, YhgA-like YPN_MT0078 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) YPN_MT0080 PF13091 PLD-like domain YPN_MT0082 PF04754 Putative transposase, YhgA-like YPN_MT0083 PF02796 Helix-turn-helix domain of resolvase YPN_MT0083 PF00239 Resolvase, N terminal domain YPN_MT0085 PF13614 AAA domain YPN_MT0085 PF18607 ParA helix turn helix domain YPN_MT0086 PF08775 ParB family YPN_MT0086 PF02195 ParB-like nuclease domain YPN_MT0088 PF01555 DNA methylase YPN_MT0090 PF07128 Protein of unknown function (DUF1380) YPN_MT0093 PF06006 Bacterial protein of unknown function (DUF905) YPN_MT0094 PF02195 ParB-like nuclease domain YPN_MT0100 PF09255 Caf1 Capsule antigen YPN_MT0101 PF06445 GyrI-like small molecule binding domain YPN_MT0101 PF12833 Helix-turn-helix domain YPN_MT0103 PF11799 impB/mucB/samB family C-terminal domain YPN_MT0103 PF00817 impB/mucB/samB family YPN_MT0103 PF13438 Domain of unknown function (DUF4113) YPN_PCP0001 PF00665 Integrase core domain YPN_PCP0001 PF02796 Helix-turn-helix domain of resolvase YPN_PCP0002 PF01695 IstB-like ATP binding protein YPN_PCP0005 PF01278 Omptin family YPN_PCP0007 PF05973 Phage derived protein Gp49-like (DUF891) YPN_PCP0008 PF01815 Rop protein YPN_PCP0009 PF01815 Rop protein