YPN_0002 SM00344 helix_turn_helix ASNC type YPN_0004 SM00327 von Willebrand factor (vWF) type A domain YPN_0005 SM00382 ATPases associated with a variety of cellular activities YPN_0011 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPN_0011 SM00895 YPN_0011 YPN_0018 SM01018 B12 binding domain YPN_0019 SM00912 haemagglutination activity domain YPN_0029 SM00382 ATPases associated with a variety of cellular activities YPN_0042 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPN_0047 SM00382 ATPases associated with a variety of cellular activities YPN_0060 SM00382 ATPases associated with a variety of cellular activities YPN_0065 SM00382 ATPases associated with a variety of cellular activities YPN_0094 SM00487 DEAD-like helicases superfamily YPN_0094 SM00490 helicase superfamily c-terminal domain YPN_0096 SM00357 Cold shock protein domain YPN_0096 SM00382 ATPases associated with a variety of cellular activities YPN_0096 SM00959 Rho termination factor, N-terminal domain YPN_0100 SM00984 UDP binding domain YPN_0110 SM01321 YPN_0110 YPN_0117 SM01219 YPN_0117 YPN_0131 SM00341 Helicase and RNase D C-terminal YPN_0131 SM00487 DEAD-like helicases superfamily YPN_0131 SM00490 helicase superfamily c-terminal domain YPN_0131 SM00956 YPN_0131 YPN_0150 SM00382 ATPases associated with a variety of cellular activities YPN_0150 SM00962 SRP54-type protein, GTPase domain YPN_0150 SM00963 SRP54-type protein, helical bundle domain YPN_0151 SM00382 ATPases associated with a variety of cellular activities YPN_0154 SM01321 YPN_0154 YPN_0159 SM00382 ATPases associated with a variety of cellular activities YPN_0160 SM00382 ATPases associated with a variety of cellular activities YPN_0171 SM00382 ATPases associated with a variety of cellular activities YPN_0191 SM00382 ATPases associated with a variety of cellular activities YPN_0193 SM01004 Delta-aminolevulinic acid dehydratase YPN_0194 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. YPN_0194 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YPN_0201 SM01321 YPN_0201 YPN_0210 SM00382 ATPases associated with a variety of cellular activities YPN_0214 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. YPN_0214 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YPN_0215 SM00649 Ribosomal protein L11/L12 YPN_0220 SM00663 RNA polymerase I subunit A N-terminus YPN_0221 SM01321 YPN_0221 YPN_0222 SM00876 Biotin and Thiamin Synthesis associated domain YPN_0234 SM00411 bacterial (prokaryotic) histone like domain YPN_0236 SM01209 YPN_0236 YPN_0236 SM01210 YPN_0236 YPN_0237 SM00798 AICARFT/IMPCHase bienzyme YPN_0237 SM00851 MGS-like domain YPN_0244 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YPN_0244 SM00474 3'-5' exonuclease YPN_0244 SM00475 5'-3' exonuclease YPN_0244 SM00482 DNA polymerase A domain YPN_0245 SM01321 YPN_0245 YPN_0248 SM00729 Elongator protein 3, MiaB family, Radical SAM YPN_0249 SM00382 ATPases associated with a variety of cellular activities YPN_0249 SM00448 cheY-homologous receiver domain YPN_0250 SM00091 PAS domain YPN_0250 SM00387 Histidine kinase-like ATPases YPN_0250 SM00388 His Kinase A (phosphoacceptor) domain YPN_0251 SM01230 YPN_0251 YPN_0256 SM00382 ATPases associated with a variety of cellular activities YPN_0258 SM00382 ATPases associated with a variety of cellular activities YPN_0271 SM00342 helix_turn_helix, arabinose operon control protein YPN_0278 SM01133 YPN_0278 YPN_0282 SM00382 ATPases associated with a variety of cellular activities YPN_0295 SM00267 diguanylate cyclase YPN_0302 SM00749 bacterial OsmY and nodulation domain YPN_0307 SM01133 YPN_0307 YPN_0309 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain YPN_0314 SM00382 ATPases associated with a variety of cellular activities YPN_0315 SM00530 Helix-turn-helix XRE-family like proteins YPN_0317 SM00382 ATPases associated with a variety of cellular activities YPN_0320 SM00267 diguanylate cyclase YPN_0322 SM00831 Cation transporter/ATPase, N-terminus YPN_0326 SM00855 Phosphoglycerate mutase family YPN_0327 SM00342 helix_turn_helix, arabinose operon control protein YPN_0327 SM00871 Bacterial transcription activator, effector binding domain YPN_0329 SM00448 cheY-homologous receiver domain YPN_0329 SM00862 Transcriptional regulatory protein, C terminal YPN_0337 SM00852 Probable molybdopterin binding domain YPN_0342 SM00271 DnaJ molecular chaperone homology domain YPN_0346 SM00904 Riboflavin kinase YPN_0352 SM01321 YPN_0352 YPN_0354 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain YPN_0355 SM00851 MGS-like domain YPN_0355 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YPN_0360 SM01321 YPN_0360 YPN_0366 SM00650 Ribosomal RNA adenine dimethylases YPN_0370 SM00271 DnaJ molecular chaperone homology domain YPN_0381 SM00382 ATPases associated with a variety of cellular activities YPN_0381 SM01086 C-terminal, D2-small domain, of ClpB protein YPN_0392 SM00487 DEAD-like helicases superfamily YPN_0392 SM00490 helicase superfamily c-terminal domain YPN_0393 SM00486 DNA polymerase type-B family YPN_0395 SM00382 ATPases associated with a variety of cellular activities YPN_0402 SM01329 YPN_0402 YPN_0403 SM00917 LeuA allosteric (dimerisation) domain YPN_0404 SM01321 YPN_0404 YPN_0409 SM01321 YPN_0409 YPN_0410 SM00354 helix_turn _helix lactose operon repressor YPN_0425 SM00842 Cell division protein FtsA YPN_0426 SM00864 Tubulin/FtsZ family, GTPase domain YPN_0426 SM00865 Tubulin/FtsZ family, C-terminal domain YPN_0430 SM00957 SecA DEAD-like domain YPN_0430 SM00958 SecA preprotein cross-linking domain YPN_0433 SM00382 ATPases associated with a variety of cellular activities YPN_0445 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPN_0445 SM00895 YPN_0445 YPN_0450 SM00858 YPN_0450 YPN_0452 SM01321 YPN_0452 YPN_0456 SM00869 Autotransporter beta-domain YPN_0460 SM00220 Serine/Threonine protein kinases, catalytic domain YPN_0462 SM00327 von Willebrand factor (vWF) type A domain YPN_0463 SM00327 von Willebrand factor (vWF) type A domain YPN_0465 SM00327 von Willebrand factor (vWF) type A domain YPN_0467 SM00912 haemagglutination activity domain YPN_0469 SM00869 Autotransporter beta-domain YPN_0472 SM00382 ATPases associated with a variety of cellular activities YPN_0474 SM00354 helix_turn _helix lactose operon repressor YPN_0479 SM01217 YPN_0479 YPN_0504 SM00400 zinc finger YPN_0504 SM00493 YPN_0504 YPN_0504 SM00766 DNA primase DnaG DnaB-binding YPN_0507 SM01207 YPN_0507 YPN_0508 SM00905 Dihydroneopterin aldolase YPN_0510 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPN_0511 SM00287 Bacterial SH3 domain homologues YPN_0512 SM01118 YPN_0512 YPN_0526 SM00387 Histidine kinase-like ATPases YPN_0526 SM00433 TopoisomeraseII YPN_0529 SM00434 DNA Topoisomerase IV YPN_0530 SM00563 Phosphate acyltransferases YPN_0536 SM00342 helix_turn_helix, arabinose operon control protein YPN_0554 SM01321 YPN_0554 YPN_0570 SM00382 ATPases associated with a variety of cellular activities YPN_0575 SM00382 ATPases associated with a variety of cellular activities YPN_0579 SM00858 YPN_0579 YPN_0593 SM00862 Transcriptional regulatory protein, C terminal YPN_0597 SM00316 Ribosomal protein S1-like RNA-binding domain YPN_0597 SM00322 K homology RNA-binding domain YPN_0598 SM00028 Tetratricopeptide repeats YPN_0599 SM00487 DEAD-like helicases superfamily YPN_0599 SM00490 helicase superfamily c-terminal domain YPN_0602 SM00530 Helix-turn-helix XRE-family like proteins YPN_0618 SM00382 ATPases associated with a variety of cellular activities YPN_0621 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPN_0622 SM00849 Metallo-beta-lactamase superfamily YPN_0623 SM00072 Guanylate kinase homologues. YPN_0625 SM00382 ATPases associated with a variety of cellular activities YPN_0626 SM00382 ATPases associated with a variety of cellular activities YPN_0632 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPN_0632 SM00866 YPN_0632 YPN_0635 SM00382 ATPases associated with a variety of cellular activities YPN_0636 SM00382 ATPases associated with a variety of cellular activities YPN_0650 SM01321 YPN_0650 YPN_0654 SM00382 ATPases associated with a variety of cellular activities YPN_0656 SM01321 YPN_0656 YPN_0660 SM01240 YPN_0660 YPN_0665 SM00644 YPN_0665 YPN_0668 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPN_0668 SM00895 YPN_0668 YPN_0672 SM01321 YPN_0672 YPN_0681 SM00947 Carbonic anhydrase YPN_0682 SM00382 ATPases associated with a variety of cellular activities YPN_0696 SM00487 DEAD-like helicases superfamily YPN_0696 SM00490 helicase superfamily c-terminal domain YPN_0696 SM00847 Helicase associated domain (HA2) Add an annotation YPN_0698 SM00382 ATPases associated with a variety of cellular activities YPN_0708 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPN_0709 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPN_0710 SM00073 Histidine Phosphotransfer domain YPN_0710 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPN_0710 SM00387 Histidine kinase-like ATPases YPN_0710 SM00388 His Kinase A (phosphoacceptor) domain YPN_0710 SM00448 cheY-homologous receiver domain YPN_0713 SM00954 Region found in RelA / SpoT proteins YPN_0716 SM01192 YPN_0716 YPN_0716 SM01193 YPN_0716 YPN_0737 SM00257 Lysin motif YPN_0739 SM00533 DNA-binding domain of DNA mismatch repair MUTS family YPN_0739 SM00534 ATPase domain of DNA mismatch repair MUTS family YPN_0742 SM00829 Enoylreductase YPN_0745 SM01120 YPN_0745 YPN_0748 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor YPN_0750 SM00062 Bacterial periplasmic substrate-binding proteins YPN_0751 SM01235 YPN_0751 YPN_0763 SM00382 ATPases associated with a variety of cellular activities YPN_0764 SM01321 YPN_0764 YPN_0766 SM00420 helix_turn_helix, Deoxyribose operon repressor YPN_0766 SM01134 YPN_0766 YPN_0767 SM01007 Class II Aldolase and Adducin N-terminal domain YPN_0768 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPN_0777 SM00382 ATPases associated with a variety of cellular activities YPN_0780 SM00861 Transketolase, pyrimidine binding domain YPN_0787 SM00382 ATPases associated with a variety of cellular activities YPN_0789 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain YPN_0797 SM00382 ATPases associated with a variety of cellular activities YPN_0798 SM01321 YPN_0798 YPN_0799 SM01091 Transporter associated domain YPN_0801 SM00382 ATPases associated with a variety of cellular activities YPN_0801 SM00962 SRP54-type protein, GTPase domain YPN_0801 SM00963 SRP54-type protein, helical bundle domain YPN_0807 SM01321 YPN_0807 YPN_0812 SM00448 cheY-homologous receiver domain YPN_0812 SM00850 LytTr DNA-binding domain YPN_0814 SM00830 Chorismate mutase type II YPN_0815 SM00830 Chorismate mutase type II YPN_0816 SM01321 YPN_0816 YPN_0819 SM00363 S4 RNA-binding domain YPN_0821 SM00382 ATPases associated with a variety of cellular activities YPN_0821 SM01086 C-terminal, D2-small domain, of ClpB protein YPN_0823 SM00155 Phospholipase D. Active site motifs. YPN_0824 SM00881 CoA binding domain YPN_0825 SM01144 YPN_0825 YPN_0827 SM00967 RNA 2'-O ribose methyltransferase substrate binding YPN_0830 SM00347 helix_turn_helix multiple antibiotic resistance protein YPN_0839 SM00062 Bacterial periplasmic substrate-binding proteins YPN_0842 SM00382 ATPases associated with a variety of cellular activities YPN_0846 SM00912 haemagglutination activity domain YPN_0847 SM00710 Parallel beta-helix repeats YPN_0857 SM00900 YPN_0857 YPN_0867 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins YPN_0871 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase YPN_0884 SM00448 cheY-homologous receiver domain YPN_0884 SM00862 Transcriptional regulatory protein, C terminal YPN_0885 SM00091 PAS domain YPN_0885 SM00387 Histidine kinase-like ATPases YPN_0885 SM00388 His Kinase A (phosphoacceptor) domain YPN_0889 SM00642 Alpha-amylase domain YPN_0897 SM01323 YPN_0897 YPN_0900 SM01321 YPN_0900 YPN_0901 SM01321 YPN_0901 YPN_0910 SM01321 YPN_0910 YPN_0911 SM00861 Transketolase, pyrimidine binding domain YPN_0915 SM00981 YPN_0915 YPN_0919 SM00382 ATPases associated with a variety of cellular activities YPN_0934 SM00382 ATPases associated with a variety of cellular activities YPN_0934 SM00994 ClpX C4-type zinc finger YPN_0934 SM01086 C-terminal, D2-small domain, of ClpB protein YPN_0935 SM00382 ATPases associated with a variety of cellular activities YPN_0935 SM00464 Found in ATP-dependent protease La (LON) YPN_0936 SM00411 bacterial (prokaryotic) histone like domain YPN_0944 SM00344 helix_turn_helix ASNC type YPN_0945 SM00382 ATPases associated with a variety of cellular activities YPN_0946 SM00382 ATPases associated with a variety of cellular activities YPN_0947 SM00938 Nitrogen regulatory protein P-II YPN_0966 SM00382 ATPases associated with a variety of cellular activities YPN_0968 SM00493 YPN_0968 YPN_0970 SM00387 Histidine kinase-like ATPases YPN_1004 SM00422 helix_turn_helix, mercury resistance YPN_1006 SM00244 prohibitin homologues YPN_1008 SM00822 YPN_1008 YPN_1010 SM00382 ATPases associated with a variety of cellular activities YPN_1012 SM01321 YPN_1012 YPN_1014 SM01001 AIR carboxylase YPN_1017 SM00840 YPN_1017 YPN_1018 SM01321 YPN_1018 YPN_1026 SM00563 Phosphate acyltransferases YPN_1028 SM00195 Dual specificity phosphatase, catalytic domain YPN_1028 SM00404 Protein tyrosine phosphatase, catalytic domain motif YPN_1031 SM00382 ATPases associated with a variety of cellular activities YPN_1038 SM01217 YPN_1038 YPN_1045 SM00869 Autotransporter beta-domain YPN_1056 SM01321 YPN_1056 YPN_1057 SM01359 YPN_1057 YPN_1057 SM01360 YPN_1057 YPN_1066 SM00382 ATPases associated with a variety of cellular activities YPN_1073 SM00382 ATPases associated with a variety of cellular activities YPN_1078 SM00421 helix_turn_helix, Lux Regulon YPN_1083 SM00729 Elongator protein 3, MiaB family, Radical SAM YPN_1086 SM00936 Penicillin-binding protein 5, C-terminal domain YPN_1097 SM00382 ATPases associated with a variety of cellular activities YPN_1100 SM00062 Bacterial periplasmic substrate-binding proteins YPN_1102 SM00116 Domain in cystathionine beta-synthase and other proteins. YPN_1102 SM01091 Transporter associated domain YPN_1106 SM00729 Elongator protein 3, MiaB family, Radical SAM YPN_1115 SM01321 YPN_1115 YPN_1118 SM01081 Putative carbohydrate binding domain YPN_1133 SM00382 ATPases associated with a variety of cellular activities YPN_1142 SM00357 Cold shock protein domain YPN_1146 SM00382 ATPases associated with a variety of cellular activities YPN_1147 SM00382 ATPases associated with a variety of cellular activities YPN_1152 SM00988 UreE urease accessory protein, N-terminal domain YPN_1167 SM00342 helix_turn_helix, arabinose operon control protein YPN_1175 SM00448 cheY-homologous receiver domain YPN_1175 SM00862 Transcriptional regulatory protein, C terminal YPN_1176 SM00387 Histidine kinase-like ATPases YPN_1176 SM00388 His Kinase A (phosphoacceptor) domain YPN_1186 SM00796 Allophanate hydrolase subunit 1 YPN_1187 SM00797 Allophanate hydrolase subunit 2 YPN_1192 SM00986 Uracil DNA glycosylase superfamily YPN_1192 SM00987 UreE urease accessory protein, C-terminal domain YPN_1195 SM00248 ankyrin repeats YPN_1196 SM00487 DEAD-like helicases superfamily YPN_1196 SM00490 helicase superfamily c-terminal domain YPN_1206 SM00358 Double-stranded RNA binding motif YPN_1206 SM00535 Ribonuclease III family YPN_1211 SM01321 YPN_1211 YPN_1217 SM00062 Bacterial periplasmic substrate-binding proteins YPN_1218 SM01211 YPN_1218 YPN_1221 SM01321 YPN_1221 YPN_1222 SM00387 Histidine kinase-like ATPases YPN_1222 SM00388 His Kinase A (phosphoacceptor) domain YPN_1224 SM00382 ATPases associated with a variety of cellular activities YPN_1224 SM00448 cheY-homologous receiver domain YPN_1226 SM00938 Nitrogen regulatory protein P-II YPN_1228 SM00382 ATPases associated with a variety of cellular activities YPN_1244 SM00271 DnaJ molecular chaperone homology domain YPN_1252 SM00869 Autotransporter beta-domain YPN_1254 SM00247 Beta/gamma crystallins YPN_1255 SM00562 YPN_1255 YPN_1257 SM00028 Tetratricopeptide repeats YPN_1258 SM00530 Helix-turn-helix XRE-family like proteins YPN_1262 SM00564 beta-propeller repeat YPN_1267 SM00116 Domain in cystathionine beta-synthase and other proteins. YPN_1267 SM01240 YPN_1267 YPN_1269 SM01321 YPN_1269 YPN_1282 SM00046 Diacylglycerol kinase catalytic domain (presumed) YPN_1285 SM00448 cheY-homologous receiver domain YPN_1285 SM00862 Transcriptional regulatory protein, C terminal YPN_1286 SM00387 Histidine kinase-like ATPases YPN_1287 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPN_1287 SM00388 His Kinase A (phosphoacceptor) domain YPN_1292 SM00382 ATPases associated with a variety of cellular activities YPN_1293 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPN_1299 SM00924 MgtE intracellular N domain YPN_1305 SM00382 ATPases associated with a variety of cellular activities YPN_1312 SM01321 YPN_1312 YPN_1323 SM01130 YPN_1323 YPN_1325 SM01321 YPN_1325 YPN_1337 SM00382 ATPases associated with a variety of cellular activities YPN_1344 SM00421 helix_turn_helix, Lux Regulon YPN_1344 SM00448 cheY-homologous receiver domain YPN_1347 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPN_1351 SM00919 Malic enzyme, NAD binding domain YPN_1351 SM01274 YPN_1351 YPN_1357 SM00869 Autotransporter beta-domain YPN_1361 SM01130 YPN_1361 YPN_1363 SM00364 Leucine-rich repeats, bacterial type YPN_1363 SM00369 Leucine-rich repeats, typical (most populated) subfamily YPN_1371 SM00382 ATPases associated with a variety of cellular activities YPN_1374 SM00448 cheY-homologous receiver domain YPN_1374 SM00862 Transcriptional regulatory protein, C terminal YPN_1375 SM00387 Histidine kinase-like ATPases YPN_1375 SM00388 His Kinase A (phosphoacceptor) domain YPN_1376 SM00327 von Willebrand factor (vWF) type A domain YPN_1381 SM00450 Rhodanese Homology Domain YPN_1382 SM00382 ATPases associated with a variety of cellular activities YPN_1384 SM00448 cheY-homologous receiver domain YPN_1384 SM00862 Transcriptional regulatory protein, C terminal YPN_1385 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPN_1385 SM00387 Histidine kinase-like ATPases YPN_1385 SM00388 His Kinase A (phosphoacceptor) domain YPN_1386 SM01321 YPN_1386 YPN_1392 SM00771 ZipA, C-terminal domain (FtsZ-binding) YPN_1393 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YPN_1393 SM00292 breast cancer carboxy-terminal domain YPN_1393 SM00532 Ligase N family YPN_1397 SM01321 YPN_1397 YPN_1417 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPN_1421 SM00382 ATPases associated with a variety of cellular activities YPN_1425 SM00421 helix_turn_helix, Lux Regulon YPN_1434 SM00382 ATPases associated with a variety of cellular activities YPN_1434 SM01086 C-terminal, D2-small domain, of ClpB protein YPN_1449 SM00382 ATPases associated with a variety of cellular activities YPN_1453 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPN_1453 SM00866 YPN_1453 YPN_1469 SM00671 Sel1-like repeats. YPN_1470 SM00671 Sel1-like repeats. YPN_1480 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPN_1480 SM00387 Histidine kinase-like ATPases YPN_1480 SM00388 His Kinase A (phosphoacceptor) domain YPN_1481 SM00448 cheY-homologous receiver domain YPN_1481 SM00862 Transcriptional regulatory protein, C terminal YPN_1488 SM00450 Rhodanese Homology Domain YPN_1494 SM01400 YPN_1494 YPN_1499 SM00937 YPN_1499 YPN_1510 SM01321 YPN_1510 YPN_1514 SM00481 DNA polymerase alpha chain like domain YPN_1522 SM00912 haemagglutination activity domain YPN_1523 SM00836 DALR anticodon binding domain YPN_1523 SM01016 Arginyl tRNA synthetase N terminal dom YPN_1534 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YPN_1535 SM00382 ATPases associated with a variety of cellular activities YPN_1537 SM00382 ATPases associated with a variety of cellular activities YPN_1539 SM00257 Lysin motif YPN_1548 SM00487 DEAD-like helicases superfamily YPN_1548 SM00491 YPN_1548 YPN_1552 SM00341 Helicase and RNase D C-terminal YPN_1552 SM00474 3'-5' exonuclease YPN_1562 SM00382 ATPases associated with a variety of cellular activities YPN_1567 SM01040 BRO family, N-terminal domain YPN_1582 SM00635 Bacterial Ig-like domain 2 YPN_1588 SM00635 Bacterial Ig-like domain 2 YPN_1592 SM01321 YPN_1592 YPN_1594 SM00232 JAB/MPN domain YPN_1597 SM01040 BRO family, N-terminal domain YPN_1600 SM00060 Fibronectin type 3 domain YPN_1612 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPN_1620 SM00763 PrkA AAA domain YPN_1623 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPN_1627 SM00870 YPN_1627 YPN_1631 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain YPN_1631 SM00437 Bacterial DNA topoisomerase I DNA-binding domain YPN_1631 SM00493 YPN_1631 YPN_1640 SM00448 cheY-homologous receiver domain YPN_1641 SM00984 UDP binding domain YPN_1642 SM00528 Domain in histone-like proteins of HNS family YPN_1644 SM00382 ATPases associated with a variety of cellular activities YPN_1651 SM00382 ATPases associated with a variety of cellular activities YPN_1652 SM00382 ATPases associated with a variety of cellular activities YPN_1655 SM00155 Phospholipase D. Active site motifs. YPN_1670 SM00749 bacterial OsmY and nodulation domain YPN_1678 SM00481 DNA polymerase alpha chain like domain YPN_1680 SM00363 S4 RNA-binding domain YPN_1682 SM00822 YPN_1682 YPN_1686 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain YPN_1686 SM00437 Bacterial DNA topoisomerase I DNA-binding domain YPN_1686 SM00493 YPN_1686 YPN_1692 SM00014 Acid phosphatase homologues YPN_1694 SM00028 Tetratricopeptide repeats YPN_1696 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family YPN_1699 SM01007 Class II Aldolase and Adducin N-terminal domain YPN_1704 SM00357 Cold shock protein domain YPN_1704 SM00955 YPN_1704 YPN_1707 SM00478 endonuclease III YPN_1707 SM00525 YPN_1707 YPN_1709 SM00900 YPN_1709 YPN_1711 SM00342 helix_turn_helix, arabinose operon control protein YPN_1721 SM00382 ATPases associated with a variety of cellular activities YPN_1725 SM00382 ATPases associated with a variety of cellular activities YPN_1728 SM00342 helix_turn_helix, arabinose operon control protein YPN_1743 SM00354 helix_turn _helix lactose operon repressor YPN_1748 SM00382 ATPases associated with a variety of cellular activities YPN_1759 SM00098 Alkaline phosphatase homologues YPN_1761 SM00100 Cyclic nucleotide-monophosphate binding domain YPN_1761 SM00419 helix_turn_helix, cAMP Regulatory protein YPN_1764 SM01002 Alanine dehydrogenase/PNT, C-terminal domain YPN_1764 SM01003 Alanine dehydrogenase/PNT, N-terminal domain YPN_1768 SM00448 cheY-homologous receiver domain YPN_1768 SM00862 Transcriptional regulatory protein, C terminal YPN_1769 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPN_1769 SM00387 Histidine kinase-like ATPases YPN_1769 SM00388 His Kinase A (phosphoacceptor) domain YPN_1773 SM01321 YPN_1773 YPN_1779 SM00020 Trypsin-like serine protease YPN_1780 SM00530 Helix-turn-helix XRE-family like proteins YPN_1781 SM00382 ATPases associated with a variety of cellular activities YPN_1781 SM00487 DEAD-like helicases superfamily YPN_1781 SM00490 helicase superfamily c-terminal domain YPN_1781 SM00847 Helicase associated domain (HA2) Add an annotation YPN_1793 SM00890 Domain of unknown function YPN_1796 SM00422 helix_turn_helix, mercury resistance YPN_1801 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YPN_1803 SM01321 YPN_1803 YPN_1804 SM00091 PAS domain YPN_1804 SM00382 ATPases associated with a variety of cellular activities YPN_1806 SM00953 YPN_1806 YPN_1813 SM00382 ATPases associated with a variety of cellular activities YPN_1814 SM01321 YPN_1814 YPN_1818 SM00382 ATPases associated with a variety of cellular activities YPN_1819 SM00382 ATPases associated with a variety of cellular activities YPN_1826 SM00363 S4 RNA-binding domain YPN_1831 SM00347 helix_turn_helix multiple antibiotic resistance protein YPN_1837 SM00479 YPN_1837 YPN_1841 SM00354 helix_turn _helix lactose operon repressor YPN_1849 SM01321 YPN_1849 YPN_1851 SM00382 ATPases associated with a variety of cellular activities YPN_1857 SM00382 ATPases associated with a variety of cellular activities YPN_1877 SM00382 ATPases associated with a variety of cellular activities YPN_1881 SM00411 bacterial (prokaryotic) histone like domain YPN_1882 SM00873 B3/4 domain YPN_1882 SM00874 tRNA synthetase B5 domain YPN_1882 SM00896 Ferredoxin-fold anticodon binding domain YPN_1888 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain YPN_1894 SM00382 ATPases associated with a variety of cellular activities YPN_1910 SM00382 ATPases associated with a variety of cellular activities YPN_1915 SM00644 YPN_1915 YPN_1916 SM00346 helix_turn_helix isocitrate lyase regulation YPN_1925 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPN_1925 SM00245 tail specific protease YPN_1926 SM00945 ProQ/FINO family YPN_1930 SM00972 Spore Coat Protein U domain YPN_1931 SM00972 Spore Coat Protein U domain YPN_1932 SM00972 Spore Coat Protein U domain YPN_1935 SM00972 Spore Coat Protein U domain YPN_1937 SM01022 YPN_1937 YPN_1940 SM00382 ATPases associated with a variety of cellular activities YPN_1944 SM01005 Alanine racemase, C-terminal domain YPN_1948 SM00644 YPN_1948 YPN_1951 SM00448 cheY-homologous receiver domain YPN_1952 SM00448 cheY-homologous receiver domain YPN_1953 SM00138 Methyltransferase, chemotaxis proteins YPN_1954 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPN_1954 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPN_1954 SM00319 Homologues of the ligand binding domain of Tar YPN_1955 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPN_1955 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPN_1955 SM00319 Homologues of the ligand binding domain of Tar YPN_1958 SM00869 Autotransporter beta-domain YPN_1963 SM00260 Two component signalling adaptor domain YPN_1964 SM00073 Histidine Phosphotransfer domain YPN_1964 SM00260 Two component signalling adaptor domain YPN_1964 SM00387 Histidine kinase-like ATPases YPN_1964 SM01231 YPN_1964 YPN_1969 SM00831 Cation transporter/ATPase, N-terminus YPN_1971 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPN_1971 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPN_1971 SM00319 Homologues of the ligand binding domain of Tar YPN_1974 SM00357 Cold shock protein domain YPN_1975 SM01038 Beta galactosidase small chain YPN_1976 SM00829 Enoylreductase YPN_1979 SM00344 helix_turn_helix ASNC type YPN_1987 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YPN_1987 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPN_1989 SM00354 helix_turn _helix lactose operon repressor YPN_1990 SM01329 YPN_1990 YPN_1997 SM00448 cheY-homologous receiver domain YPN_1997 SM00862 Transcriptional regulatory protein, C terminal YPN_1998 SM00387 Histidine kinase-like ATPases YPN_1998 SM00388 His Kinase A (phosphoacceptor) domain YPN_1999 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. YPN_2005 SM00382 ATPases associated with a variety of cellular activities YPN_2007 SM00487 DEAD-like helicases superfamily YPN_2007 SM00490 helicase superfamily c-terminal domain YPN_2007 SM00982 YPN_2007 YPN_2007 SM01058 CarD-like/TRCF domain YPN_2020 SM01321 YPN_2020 YPN_2027 SM01321 YPN_2027 YPN_2028 SM00825 Beta-ketoacyl synthase YPN_2030 SM00822 YPN_2030 YPN_2031 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YPN_2037 SM00363 S4 RNA-binding domain YPN_2038 SM00316 Ribosomal protein S1-like RNA-binding domain YPN_2046 SM00421 helix_turn_helix, Lux Regulon YPN_2048 SM00450 Rhodanese Homology Domain YPN_2053 SM00421 helix_turn_helix, Lux Regulon YPN_2072 SM00354 helix_turn _helix lactose operon repressor YPN_2074 SM00382 ATPases associated with a variety of cellular activities YPN_2084 SM00912 haemagglutination activity domain YPN_2090 SM01329 YPN_2090 YPN_2092 SM00354 helix_turn _helix lactose operon repressor YPN_2094 SM00382 ATPases associated with a variety of cellular activities YPN_2096 SM00829 Enoylreductase YPN_2107 SM00062 Bacterial periplasmic substrate-binding proteins YPN_2107 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPN_2109 SM00382 ATPases associated with a variety of cellular activities YPN_2110 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YPN_2110 SM00091 PAS domain YPN_2110 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPN_2112 SM00382 ATPases associated with a variety of cellular activities YPN_2119 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YPN_2132 SM00354 helix_turn _helix lactose operon repressor YPN_2145 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPN_2145 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YPN_2146 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YPN_2153 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPN_2160 SM00354 helix_turn _helix lactose operon repressor YPN_2168 SM00052 Putative diguanylate phosphodiesterase YPN_2170 SM00382 ATPases associated with a variety of cellular activities YPN_2173 SM00062 Bacterial periplasmic substrate-binding proteins YPN_2182 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPN_2184 SM00342 helix_turn_helix, arabinose operon control protein YPN_2189 SM00825 Beta-ketoacyl synthase YPN_2197 SM00463 Small MutS-related domain YPN_2199 SM00855 Phosphoglycerate mutase family YPN_2213 SM00382 ATPases associated with a variety of cellular activities YPN_2225 SM00382 ATPases associated with a variety of cellular activities YPN_2229 SM00382 ATPases associated with a variety of cellular activities YPN_2235 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPN_2235 SM00866 YPN_2235 YPN_2258 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YPN_2258 SM00465 GIY-YIG type nucleases (URI domain) YPN_2259 SM00421 helix_turn_helix, Lux Regulon YPN_2259 SM00448 cheY-homologous receiver domain YPN_2275 SM00382 ATPases associated with a variety of cellular activities YPN_2277 SM00062 Bacterial periplasmic substrate-binding proteins YPN_2277 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPN_2285 SM00342 helix_turn_helix, arabinose operon control protein YPN_2289 SM00478 endonuclease III YPN_2296 SM00382 ATPases associated with a variety of cellular activities YPN_2310 SM00382 ATPases associated with a variety of cellular activities YPN_2313 SM01007 Class II Aldolase and Adducin N-terminal domain YPN_2317 SM00047 Lysozyme subfamily 2 YPN_2326 SM00858 YPN_2326 YPN_2329 SM00634 Bacterial Ig-like domain (group 1) YPN_2330 SM01321 YPN_2330 YPN_2345 SM01022 YPN_2345 YPN_2347 SM00487 DEAD-like helicases superfamily YPN_2347 SM00490 helicase superfamily c-terminal domain YPN_2353 SM00903 Flavin reductase like domain YPN_2363 SM00347 helix_turn_helix multiple antibiotic resistance protein YPN_2364 SM01091 Transporter associated domain YPN_2371 SM00091 PAS domain YPN_2372 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YPN_2372 SM00091 PAS domain YPN_2372 SM00267 diguanylate cyclase YPN_2376 SM00357 Cold shock protein domain YPN_2385 SM00342 helix_turn_helix, arabinose operon control protein YPN_2387 SM00382 ATPases associated with a variety of cellular activities YPN_2388 SM00090 RIO-like kinase YPN_2395 SM00354 helix_turn _helix lactose operon repressor YPN_2404 SM00421 helix_turn_helix, Lux Regulon YPN_2404 SM00448 cheY-homologous receiver domain YPN_2412 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YPN_2418 SM00634 Bacterial Ig-like domain (group 1) YPN_2425 SM00382 ATPases associated with a variety of cellular activities YPN_2426 SM00382 ATPases associated with a variety of cellular activities YPN_2439 SM01350 YPN_2439 YPN_2447 SM00382 ATPases associated with a variety of cellular activities YPN_2449 SM01006 Siderophore biosynthesis protein domain YPN_2453 SM01091 Transporter associated domain YPN_2459 SM01321 YPN_2459 YPN_2463 SM01321 YPN_2463 YPN_2468 SM00919 Malic enzyme, NAD binding domain YPN_2468 SM01274 YPN_2468 YPN_2471 SM00382 ATPases associated with a variety of cellular activities YPN_2477 SM00829 Enoylreductase YPN_2481 SM00382 ATPases associated with a variety of cellular activities YPN_2483 SM00852 Probable molybdopterin binding domain YPN_2487 SM00382 ATPases associated with a variety of cellular activities YPN_2508 SM00382 ATPases associated with a variety of cellular activities YPN_2508 SM01086 C-terminal, D2-small domain, of ClpB protein YPN_2515 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YPN_2523 SM00825 Beta-ketoacyl synthase YPN_2534 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase YPN_2535 SM00992 Hemimethylated DNA-binding protein YccV like YPN_2536 SM00881 CoA binding domain YPN_2538 SM00851 MGS-like domain YPN_2545 SM01321 YPN_2545 YPN_2551 SM00382 ATPases associated with a variety of cellular activities YPN_2552 SM00825 Beta-ketoacyl synthase YPN_2553 SM01321 YPN_2553 YPN_2558 SM00382 ATPases associated with a variety of cellular activities YPN_2559 SM00981 YPN_2559 YPN_2568 SM00849 Metallo-beta-lactamase superfamily YPN_2571 SM01321 YPN_2571 YPN_2579 SM00357 Cold shock protein domain YPN_2580 SM01150 YPN_2580 YPN_2582 SM00382 ATPases associated with a variety of cellular activities YPN_2583 SM00849 Metallo-beta-lactamase superfamily YPN_2584 SM00411 bacterial (prokaryotic) histone like domain YPN_2585 SM00316 Ribosomal protein S1-like RNA-binding domain YPN_2591 SM00870 YPN_2591 YPN_2599 SM00382 ATPases associated with a variety of cellular activities YPN_2602 SM00382 ATPases associated with a variety of cellular activities YPN_2604 SM00843 YPN_2604 YPN_2605 SM00344 helix_turn_helix ASNC type YPN_2607 SM00382 ATPases associated with a variety of cellular activities YPN_2608 SM00382 ATPases associated with a variety of cellular activities YPN_2610 SM00316 Ribosomal protein S1-like RNA-binding domain YPN_2611 SM01321 YPN_2611 YPN_2612 SM00382 ATPases associated with a variety of cellular activities YPN_2612 SM01086 C-terminal, D2-small domain, of ClpB protein YPN_2614 SM00357 Cold shock protein domain YPN_2615 SM00382 ATPases associated with a variety of cellular activities YPN_2630 SM00830 Chorismate mutase type II YPN_2631 SM00382 ATPases associated with a variety of cellular activities YPN_2632 SM00062 Bacterial periplasmic substrate-binding proteins YPN_2632 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPN_2639 SM00382 ATPases associated with a variety of cellular activities YPN_2642 SM00244 prohibitin homologues YPN_2643 SM00062 Bacterial periplasmic substrate-binding proteins YPN_2643 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPN_2648 SM00382 ATPases associated with a variety of cellular activities YPN_2655 SM00014 Acid phosphatase homologues YPN_2656 SM01133 YPN_2656 YPN_2657 SM00420 helix_turn_helix, Deoxyribose operon repressor YPN_2657 SM01134 YPN_2657 YPN_2659 SM00936 Penicillin-binding protein 5, C-terminal domain YPN_2661 SM00382 ATPases associated with a variety of cellular activities YPN_2661 SM00930 YPN_2661 YPN_2667 SM00382 ATPases associated with a variety of cellular activities YPN_2673 SM00518 AP endonuclease family 2 YPN_2678 SM00862 Transcriptional regulatory protein, C terminal YPN_2684 SM00382 ATPases associated with a variety of cellular activities YPN_2694 SM00841 Elongation factor P, C-terminal YPN_2694 SM01185 YPN_2694 YPN_2697 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPN_2697 SM00895 YPN_2697 YPN_2699 SM00833 Cobalamin synthesis protein cobW C-terminal domain YPN_2700 SM00014 Acid phosphatase homologues YPN_2702 SM00052 Putative diguanylate phosphodiesterase YPN_2706 SM00382 ATPases associated with a variety of cellular activities YPN_2710 SM00363 S4 RNA-binding domain YPN_2711 SM00487 DEAD-like helicases superfamily YPN_2711 SM00490 helicase superfamily c-terminal domain YPN_2713 SM01321 YPN_2713 YPN_2741 SM00420 helix_turn_helix, Deoxyribose operon repressor YPN_2741 SM01134 YPN_2741 YPN_2742 SM01007 Class II Aldolase and Adducin N-terminal domain YPN_2745 SM00530 Helix-turn-helix XRE-family like proteins YPN_2749 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPN_2749 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPN_2754 SM01321 YPN_2754 YPN_2759 SM00421 helix_turn_helix, Lux Regulon YPN_2759 SM00448 cheY-homologous receiver domain YPN_2760 SM00387 Histidine kinase-like ATPases YPN_2760 SM00388 His Kinase A (phosphoacceptor) domain YPN_2760 SM00448 cheY-homologous receiver domain YPN_2761 SM00434 DNA Topoisomerase IV YPN_2767 SM00852 Probable molybdopterin binding domain YPN_2770 SM01060 YPN_2770 YPN_2771 SM00487 DEAD-like helicases superfamily YPN_2771 SM00488 YPN_2771 YPN_2771 SM00491 YPN_2771 YPN_2778 SM00382 ATPases associated with a variety of cellular activities YPN_2782 SM00450 Rhodanese Homology Domain YPN_2785 SM00382 ATPases associated with a variety of cellular activities YPN_2794 SM00382 ATPases associated with a variety of cellular activities YPN_2798 SM00507 HNH nucleases YPN_2799 SM01118 YPN_2799 YPN_2805 SM01321 YPN_2805 YPN_2806 SM00490 helicase superfamily c-terminal domain YPN_2814 SM00487 DEAD-like helicases superfamily YPN_2814 SM00490 helicase superfamily c-terminal domain YPN_2817 SM00382 ATPases associated with a variety of cellular activities YPN_2824 SM00382 ATPases associated with a variety of cellular activities YPN_2824 SM00448 cheY-homologous receiver domain YPN_2825 SM00091 PAS domain YPN_2825 SM00387 Histidine kinase-like ATPases YPN_2825 SM00388 His Kinase A (phosphoacceptor) domain YPN_2828 SM01321 YPN_2828 YPN_2837 SM01321 YPN_2837 YPN_2842 SM00729 Elongator protein 3, MiaB family, Radical SAM YPN_2845 SM00487 DEAD-like helicases superfamily YPN_2845 SM00490 helicase superfamily c-terminal domain YPN_2846 SM00382 ATPases associated with a variety of cellular activities YPN_2850 SM00729 Elongator protein 3, MiaB family, Radical SAM YPN_2850 SM00876 Biotin and Thiamin Synthesis associated domain YPN_2854 SM00382 ATPases associated with a variety of cellular activities YPN_2859 SM00382 ATPases associated with a variety of cellular activities YPN_2867 SM00855 Phosphoglycerate mutase family YPN_2882 SM00881 CoA binding domain YPN_2885 SM00861 Transketolase, pyrimidine binding domain YPN_2898 SM01321 YPN_2898 YPN_2907 SM00778 Zinc-binding domain of primase-helicase YPN_2913 SM00382 ATPases associated with a variety of cellular activities YPN_2916 SM00479 YPN_2916 YPN_2919 SM00849 Metallo-beta-lactamase superfamily YPN_2920 SM00257 Lysin motif YPN_2926 SM00382 ATPases associated with a variety of cellular activities YPN_2926 SM00930 YPN_2926 YPN_2934 SM01322 YPN_2934 YPN_2938 SM00977 TilS substrate C-terminal domain YPN_2941 SM00481 DNA polymerase alpha chain like domain YPN_2947 SM00935 Outer membrane protein (OmpH-like) YPN_2949 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPN_2959 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPN_2961 SM01321 YPN_2961 YPN_2966 SM01321 YPN_2966 YPN_2970 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YPN_2970 SM00475 5'-3' exonuclease YPN_2977 SM00925 MltA specific insert domain YPN_2978 SM00646 YPN_2978 YPN_2990 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. YPN_2992 SM00927 DNA mismatch repair enzyme MutH YPN_2999 SM00354 helix_turn _helix lactose operon repressor YPN_3004 SM00849 Metallo-beta-lactamase superfamily YPN_3006 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPN_3006 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPN_3006 SM00319 Homologues of the ligand binding domain of Tar YPN_3008 SM00862 Transcriptional regulatory protein, C terminal YPN_3019 SM00382 ATPases associated with a variety of cellular activities YPN_3023 SM00947 Carbonic anhydrase YPN_3026 SM00869 Autotransporter beta-domain YPN_3029 SM00382 ATPases associated with a variety of cellular activities YPN_3031 SM01321 YPN_3031 YPN_3033 SM00420 helix_turn_helix, Deoxyribose operon repressor YPN_3033 SM01134 YPN_3033 YPN_3048 SM00354 helix_turn _helix lactose operon repressor YPN_3051 SM00354 helix_turn _helix lactose operon repressor YPN_3059 SM00382 ATPases associated with a variety of cellular activities YPN_3060 SM00382 ATPases associated with a variety of cellular activities YPN_3079 SM00778 Zinc-binding domain of primase-helicase YPN_3079 SM00885 D5 N terminal like YPN_3080 SM00530 Helix-turn-helix XRE-family like proteins YPN_3082 SM00530 Helix-turn-helix XRE-family like proteins YPN_3088 SM00937 YPN_3088 YPN_3094 SM00387 Histidine kinase-like ATPases YPN_3094 SM00388 His Kinase A (phosphoacceptor) domain YPN_3095 SM00448 cheY-homologous receiver domain YPN_3095 SM00862 Transcriptional regulatory protein, C terminal YPN_3109 SM01011 Aminopeptidase P, N-terminal domain YPN_3121 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPN_3122 SM01321 YPN_3122 YPN_3123 SM00861 Transketolase, pyrimidine binding domain YPN_3128 SM00731 SprT homologues. YPN_3134 SM00732 Likely ribonuclease with RNase H fold. YPN_3137 SM00382 ATPases associated with a variety of cellular activities YPN_3141 SM01152 YPN_3141 YPN_3143 SM00729 Elongator protein 3, MiaB family, Radical SAM YPN_3150 SM00478 endonuclease III YPN_3150 SM00525 YPN_3150 YPN_3156 SM00382 ATPases associated with a variety of cellular activities YPN_3170 SM00382 ATPases associated with a variety of cellular activities YPN_3170 SM01086 C-terminal, D2-small domain, of ClpB protein YPN_3183 SM00421 helix_turn_helix, Lux Regulon YPN_3189 SM01006 Siderophore biosynthesis protein domain YPN_3197 SM00354 helix_turn _helix lactose operon repressor YPN_3204 SM00869 Autotransporter beta-domain YPN_3205 SM00869 Autotransporter beta-domain YPN_3210 SM00382 ATPases associated with a variety of cellular activities YPN_3211 SM00382 ATPases associated with a variety of cellular activities YPN_3219 SM00382 ATPases associated with a variety of cellular activities YPN_3221 SM00823 Phosphopantetheine attachment site YPN_3221 SM00825 Beta-ketoacyl synthase YPN_3225 SM00364 Leucine-rich repeats, bacterial type YPN_3225 SM00369 Leucine-rich repeats, typical (most populated) subfamily YPN_3226 SM00364 Leucine-rich repeats, bacterial type YPN_3227 SM00364 Leucine-rich repeats, bacterial type YPN_3228 SM00869 Autotransporter beta-domain YPN_3234 SM00052 Putative diguanylate phosphodiesterase YPN_3234 SM00091 PAS domain YPN_3234 SM00267 diguanylate cyclase YPN_3237 SM01387 YPN_3237 YPN_3241 SM00316 Ribosomal protein S1-like RNA-binding domain YPN_3241 SM00322 K homology RNA-binding domain YPN_3246 SM00382 ATPases associated with a variety of cellular activities YPN_3248 SM01103 YPN_3248 YPN_3251 SM00448 cheY-homologous receiver domain YPN_3251 SM00862 Transcriptional regulatory protein, C terminal YPN_3252 SM00387 Histidine kinase-like ATPases YPN_3252 SM00388 His Kinase A (phosphoacceptor) domain YPN_3270 SM00116 Domain in cystathionine beta-synthase and other proteins. YPN_3270 SM01091 Transporter associated domain YPN_3279 SM01321 YPN_3279 YPN_3286 SM00382 ATPases associated with a variety of cellular activities YPN_3290 SM00967 RNA 2'-O ribose methyltransferase substrate binding YPN_3291 SM00316 Ribosomal protein S1-like RNA-binding domain YPN_3291 SM00357 Cold shock protein domain YPN_3291 SM00955 YPN_3291 YPN_3293 SM00788 Adenylosuccinate synthetase YPN_3295 SM00244 prohibitin homologues YPN_3296 SM00244 prohibitin homologues YPN_3300 SM00853 MutL C terminal dimerisation domain YPN_3300 SM01340 YPN_3300 YPN_3301 SM00257 Lysin motif YPN_3301 SM00646 YPN_3301 YPN_3305 SM00479 YPN_3305 YPN_3316 SM00841 Elongation factor P, C-terminal YPN_3316 SM01185 YPN_3316 YPN_3320 SM00883 Chaperonin 10 Kd subunit YPN_3326 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPN_3330 SM01276 YPN_3330 YPN_3337 SM00342 helix_turn_helix, arabinose operon control protein YPN_3338 SM00342 helix_turn_helix, arabinose operon control protein YPN_3342 SM01007 Class II Aldolase and Adducin N-terminal domain YPN_3349 SM01005 Alanine racemase, C-terminal domain YPN_3350 SM00382 ATPases associated with a variety of cellular activities YPN_3351 SM00829 Enoylreductase YPN_3357 SM00563 Phosphate acyltransferases YPN_3360 SM00869 Autotransporter beta-domain YPN_3361 SM00060 Fibronectin type 3 domain YPN_3380 SM00729 Elongator protein 3, MiaB family, Radical SAM YPN_3388 SM00382 ATPases associated with a variety of cellular activities YPN_3401 SM00382 ATPases associated with a variety of cellular activities YPN_3409 SM00342 helix_turn_helix, arabinose operon control protein YPN_3413 SM00387 Histidine kinase-like ATPases YPN_3413 SM00388 His Kinase A (phosphoacceptor) domain YPN_3413 SM00448 cheY-homologous receiver domain YPN_3414 SM00421 helix_turn_helix, Lux Regulon YPN_3414 SM00448 cheY-homologous receiver domain YPN_3421 SM00382 ATPases associated with a variety of cellular activities YPN_3426 SM00382 ATPases associated with a variety of cellular activities YPN_3434 SM00749 bacterial OsmY and nodulation domain YPN_3437 SM00073 Histidine Phosphotransfer domain YPN_3437 SM00091 PAS domain YPN_3437 SM00387 Histidine kinase-like ATPases YPN_3437 SM00388 His Kinase A (phosphoacceptor) domain YPN_3437 SM00448 cheY-homologous receiver domain YPN_3438 SM00729 Elongator protein 3, MiaB family, Radical SAM YPN_3448 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPN_3449 SM01321 YPN_3449 YPN_3450 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPN_3457 SM00382 ATPases associated with a variety of cellular activities YPN_3459 SM00116 Domain in cystathionine beta-synthase and other proteins. YPN_3463 SM00382 ATPases associated with a variety of cellular activities YPN_3474 SM00354 helix_turn _helix lactose operon repressor YPN_3476 SM00642 Alpha-amylase domain YPN_3502 SM00316 Ribosomal protein S1-like RNA-binding domain YPN_3507 SM00052 Putative diguanylate phosphodiesterase YPN_3507 SM00267 diguanylate cyclase YPN_3508 SM00829 Enoylreductase YPN_3513 SM00878 Biotin carboxylase C-terminal domain YPN_3520 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPN_3520 SM00895 YPN_3520 YPN_3524 SM00849 Metallo-beta-lactamase superfamily YPN_3526 SM00357 Cold shock protein domain YPN_3527 SM00357 Cold shock protein domain YPN_3528 SM01321 YPN_3528 YPN_3536 SM00382 ATPases associated with a variety of cellular activities YPN_3543 SM00382 ATPases associated with a variety of cellular activities YPN_3546 SM00062 Bacterial periplasmic substrate-binding proteins YPN_3548 SM01133 YPN_3548 YPN_3551 SM00342 helix_turn_helix, arabinose operon control protein YPN_3559 SM00530 Helix-turn-helix XRE-family like proteins YPN_3562 SM00860 SMI1 / KNR4 family YPN_3573 SM00382 ATPases associated with a variety of cellular activities YPN_3573 SM01086 C-terminal, D2-small domain, of ClpB protein YPN_3589 SM00642 Alpha-amylase domain YPN_3590 SM00642 Alpha-amylase domain YPN_3592 SM00257 Lysin motif YPN_3592 SM00634 Bacterial Ig-like domain (group 1) YPN_3597 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPN_3604 SM00354 helix_turn _helix lactose operon repressor YPN_3607 SM00448 cheY-homologous receiver domain YPN_3607 SM00862 Transcriptional regulatory protein, C terminal YPN_3613 SM00382 ATPases associated with a variety of cellular activities YPN_3614 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPN_3614 SM00387 Histidine kinase-like ATPases YPN_3614 SM00388 His Kinase A (phosphoacceptor) domain YPN_3614 SM00448 cheY-homologous receiver domain YPN_3617 SM01321 YPN_3617 YPN_3620 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YPN_3621 SM00235 Zinc-dependent metalloprotease YPN_3634 SM00869 Autotransporter beta-domain YPN_3638 SM00052 Putative diguanylate phosphodiesterase YPN_3646 SM00052 Putative diguanylate phosphodiesterase YPN_3646 SM00267 diguanylate cyclase YPN_3648 SM00382 ATPases associated with a variety of cellular activities YPN_3649 SM00382 ATPases associated with a variety of cellular activities YPN_3654 SM00912 haemagglutination activity domain YPN_3656 SM00387 Histidine kinase-like ATPases YPN_3657 SM00382 ATPases associated with a variety of cellular activities YPN_3660 SM00421 helix_turn_helix, Lux Regulon YPN_3660 SM00448 cheY-homologous receiver domain YPN_3673 SM00382 ATPases associated with a variety of cellular activities YPN_3676 SM00530 Helix-turn-helix XRE-family like proteins YPN_3681 SM00342 helix_turn_helix, arabinose operon control protein YPN_3683 SM00382 ATPases associated with a variety of cellular activities YPN_3706 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPN_3709 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPN_3709 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPN_3709 SM01358 YPN_3709 YPN_3724 SM00642 Alpha-amylase domain YPN_3744 SM00487 DEAD-like helicases superfamily YPN_3744 SM00490 helicase superfamily c-terminal domain YPN_3745 SM00354 helix_turn _helix lactose operon repressor YPN_3748 SM00382 ATPases associated with a variety of cellular activities YPN_3748 SM01086 C-terminal, D2-small domain, of ClpB protein YPN_3754 SM00382 ATPases associated with a variety of cellular activities YPN_3755 SM01321 YPN_3755 YPN_3777 SM00448 cheY-homologous receiver domain YPN_3777 SM00862 Transcriptional regulatory protein, C terminal YPN_3778 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPN_3778 SM00387 Histidine kinase-like ATPases YPN_3778 SM00388 His Kinase A (phosphoacceptor) domain YPN_3779 SM00342 helix_turn_helix, arabinose operon control protein YPN_3781 SM00971 Serine acetyltransferase, N-terminal YPN_3785 SM00450 Rhodanese Homology Domain YPN_3790 SM00829 Enoylreductase YPN_3798 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain YPN_3798 SM01232 YPN_3798 YPN_3809 SM00532 Ligase N family YPN_3810 SM00072 Guanylate kinase homologues. YPN_3811 SM01409 YPN_3811 YPN_3812 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPN_3812 SM00954 Region found in RelA / SpoT proteins YPN_3814 SM00487 DEAD-like helicases superfamily YPN_3814 SM00490 helicase superfamily c-terminal domain YPN_3820 SM00382 ATPases associated with a variety of cellular activities YPN_3833 SM00422 helix_turn_helix, mercury resistance YPN_3835 SM00662 RNA polymerases D YPN_3836 SM00363 S4 RNA-binding domain YPN_3836 SM01390 YPN_3836 YPN_3848 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YPN_3849 SM01374 YPN_3849 YPN_3853 SM00322 K homology RNA-binding domain YPN_3856 SM01382 YPN_3856 YPN_3856 SM01383 YPN_3856 YPN_3860 SM01403 YPN_3860 YPN_3863 SM01321 YPN_3863 YPN_3865 SM00838 Elongation factor G C-terminus YPN_3865 SM00889 Elongation factor G, domain IV YPN_3879 SM00382 ATPases associated with a variety of cellular activities YPN_3884 SM00382 ATPases associated with a variety of cellular activities YPN_3885 SM00062 Bacterial periplasmic substrate-binding proteins YPN_3892 SM00100 Cyclic nucleotide-monophosphate binding domain YPN_3892 SM00419 helix_turn_helix, cAMP Regulatory protein YPN_3899 SM00354 helix_turn _helix lactose operon repressor YPN_3925 SM00363 S4 RNA-binding domain YPN_3928 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPN_3928 SM00387 Histidine kinase-like ATPases YPN_3928 SM00388 His Kinase A (phosphoacceptor) domain YPN_3929 SM00448 cheY-homologous receiver domain YPN_3929 SM00862 Transcriptional regulatory protein, C terminal YPN_3931 SM00316 Ribosomal protein S1-like RNA-binding domain YPN_3931 SM00732 Likely ribonuclease with RNase H fold. YPN_3932 SM00899 YPN_3932 YPN_3943 SM00382 ATPases associated with a variety of cellular activities YPN_3945 SM00421 helix_turn_helix, Lux Regulon YPN_3946 SM00450 Rhodanese Homology Domain YPN_3948 SM00420 helix_turn_helix, Deoxyribose operon repressor YPN_3948 SM01134 YPN_3948 YPN_3952 SM00387 Histidine kinase-like ATPases YPN_3952 SM00433 TopoisomeraseII YPN_3954 SM00480 DNA polymerase III beta subunit YPN_3955 SM00382 ATPases associated with a variety of cellular activities YPN_3955 SM00760 Bacterial dnaA protein helix-turn-helix domain YPN_3958 SM01234 YPN_3958 YPN_3968 SM00062 Bacterial periplasmic substrate-binding proteins YPN_3971 SM00382 ATPases associated with a variety of cellular activities YPN_3978 SM00382 ATPases associated with a variety of cellular activities YPN_3987 SM01228 YPN_3987 YPN_MT0002 SM00382 ATPases associated with a variety of cellular activities YPN_MT0008 SM00232 JAB/MPN domain YPN_MT0014 SM00635 Bacterial Ig-like domain 2 YPN_MT0020 SM00635 Bacterial Ig-like domain 2 YPN_MT0030 SM00382 ATPases associated with a variety of cellular activities YPN_MT0031 SM00470 ParB-like nuclease domain YPN_MT0032 SM00470 ParB-like nuclease domain YPN_MT0033 SM00487 DEAD-like helicases superfamily YPN_MT0033 SM00490 helicase superfamily c-terminal domain YPN_MT0040 SM01321 YPN_MT0040 YPN_MT0044 SM00062 Bacterial periplasmic substrate-binding proteins YPN_MT0051 SM00244 prohibitin homologues YPN_MT0054 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YPN_MT0054 SM00475 5'-3' exonuclease YPN_MT0059 SM00481 DNA polymerase alpha chain like domain YPN_MT0070 SM00382 ATPases associated with a variety of cellular activities YPN_MT0079 SM00155 Phospholipase D. Active site motifs. YPN_MT0083 SM00857 Resolvase, N terminal domain YPN_MT0086 SM00470 ParB-like nuclease domain YPN_MT0087 SM00382 ATPases associated with a variety of cellular activities YPN_MT0094 SM00470 ParB-like nuclease domain YPN_MT0096 SM00635 Bacterial Ig-like domain 2 YPN_MT0101 SM00342 helix_turn_helix, arabinose operon control protein YPN_PCP0002 SM00382 ATPases associated with a variety of cellular activities YPN_PCP0006 SM00530 Helix-turn-helix XRE-family like proteins