YPN_0001	SSF52218	Flavoproteins
YPN_0002	SSF46785	"Winged helix" DNA-binding domain
YPN_0002	SSF54909	Dimeric alpha+beta barrel
YPN_0003	SSF55681	Class II aaRS and biotin synthetases
YPN_0004	SSF53300	vWA-like
YPN_0005	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0007	SSF102546	RbsD-like
YPN_0008	SSF53613	Ribokinase-like
YPN_0010	SSF103473	MFS general substrate transporter
YPN_0011	SSF46785	"Winged helix" DNA-binding domain
YPN_0011	SSF48008	GntR ligand-binding domain-like
YPN_0012	SSF52317	Class I glutamine amidotransferase-like
YPN_0014	SSF51645	Malate synthase G
YPN_0015	SSF51621	Phosphoenolpyruvate/pyruvate domain
YPN_0017	SSF55781	GAF domain-like
YPN_0018	SSF47644	Methionine synthase domain
YPN_0018	SSF51717	Dihydropteroate synthetase-like
YPN_0018	SSF52242	Cobalamin (vitamin B12)-binding domain
YPN_0018	SSF56507	Methionine synthase activation domain-like
YPN_0018	SSF82282	Homocysteine S-methyltransferase
YPN_0019	SSF51126	Pectin lyase-like
YPN_0022	SSF53633	Carbamate kinase-like
YPN_0022	SSF55021	ACT-like
YPN_0023	SSF53697	SIS domain
YPN_0025	SSF161098	MetI-like
YPN_0026	SSF160964	MalF N-terminal region-like
YPN_0026	SSF161098	MetI-like
YPN_0027	SSF53850	Periplasmic binding protein-like II
YPN_0029	SSF50331	MOP-like
YPN_0029	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0030	SSF56935	Porins
YPN_0033	SSF141452	Hcp1-like
YPN_0036	SSF160719	gpW/gp25-like
YPN_0038	SSF53098	Ribonuclease H-like
YPN_0039	SSF46689	Homeodomain-like
YPN_0039	SSF48295	TrpR-like
YPN_0040	SSF51621	Phosphoenolpyruvate/pyruvate domain
YPN_0041	SSF53187	Zn-dependent exopeptidases
YPN_0041	SSF55031	Bacterial exopeptidase dimerisation domain
YPN_0042	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_0042	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPN_0043	SSF53633	Carbamate kinase-like
YPN_0044	SSF48557	L-aspartase-like
YPN_0045	SSF56935	Porins
YPN_0046	SSF54621	Heme-binding protein A (HasA)
YPN_0047	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0047	SSF90123	ABC transporter transmembrane region
YPN_0048	SSF111369	HlyD-like secretion proteins
YPN_0049	SSF74653	TolA/TonB C-terminal domain
YPN_0050	SSF51905	FAD/NAD(P)-binding domain
YPN_0050	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
YPN_0051	SSF52833	Thioredoxin-like
YPN_0052	SSF46785	"Winged helix" DNA-binding domain
YPN_0052	SSF53850	Periplasmic binding protein-like II
YPN_0053	SSF51905	FAD/NAD(P)-binding domain
YPN_0053	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
YPN_0054	SSF46689	Homeodomain-like
YPN_0056	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_0057	SSF56935	Porins
YPN_0058	SSF53681	Aspartate/glutamate racemase
YPN_0059	SSF53822	Periplasmic binding protein-like I
YPN_0060	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0063	SSF46785	"Winged helix" DNA-binding domain
YPN_0063	SSF53850	Periplasmic binding protein-like II
YPN_0065	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0065	SSF54211	Ribosomal protein S5 domain 2-like
YPN_0066	SSF52467	DHS-like NAD/FAD-binding domain
YPN_0066	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
YPN_0067	SSF55021	ACT-like
YPN_0068	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
YPN_0069	SSF143975	IlvD/EDD N-terminal domain-like
YPN_0069	SSF52016	LeuD/IlvD-like
YPN_0070	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
YPN_0070	SSF55021	ACT-like
YPN_0076	SSF46785	"Winged helix" DNA-binding domain
YPN_0076	SSF53850	Periplasmic binding protein-like II
YPN_0077	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPN_0077	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_0079	SSF69369	Cloacin translocation domain
YPN_0081	SSF47345	Colicin E immunity proteins
YPN_0083	SSF49354	PapD-like
YPN_0083	SSF49584	Periplasmic chaperone C-domain
YPN_0084	SSF49401	Bacterial adhesins
YPN_0085	SSF141729	FimD N-terminal domain-like
YPN_0086	SSF49354	PapD-like
YPN_0086	SSF49584	Periplasmic chaperone C-domain
YPN_0087	SSF49401	Bacterial adhesins
YPN_0089	SSF50969	YVTN repeat-like/Quinoprotein amine dehydrogenase
YPN_0090	SSF54534	FKBP-like
YPN_0091	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0092	SSF109604	HD-domain/PDEase-like
YPN_0092	SSF53067	Actin-like ATPase domain
YPN_0093	SSF53067	Actin-like ATPase domain
YPN_0094	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0095	SSF52833	Thioredoxin-like
YPN_0096	SSF50249	Nucleic acid-binding proteins
YPN_0096	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0096	SSF68912	Rho N-terminal domain-like
YPN_0098	SSF160355	Bacterial polysaccharide co-polymerase-like
YPN_0099	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPN_0100	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPN_0100	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_0100	SSF52413	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
YPN_0101	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_0102	SSF53448	Nucleotide-diphospho-sugar transferases
YPN_0103	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPN_0104	SSF53383	PLP-dependent transferases
YPN_0110	SSF143422	Transposase IS200-like
YPN_0111	SSF48452	TPR-like
YPN_0113	SSF69618	HemD-like
YPN_0114	SSF53850	Periplasmic binding protein-like II
YPN_0114	SSF54782	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
YPN_0117	SSF55387	Frataxin/Nqo15-like
YPN_0119	SSF54506	Diaminopimelate epimerase-like
YPN_0121	SSF47823	lambda integrase-like, N-terminal domain
YPN_0121	SSF56349	DNA breaking-rejoining enzymes
YPN_0122	SSF56784	HAD-like
YPN_0123	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0124	SSF46689	Homeodomain-like
YPN_0126	SSF51621	Phosphoenolpyruvate/pyruvate domain
YPN_0127	SSF143865	CorA soluble domain-like
YPN_0127	SSF144083	Magnesium transport protein CorA, transmembrane region
YPN_0128	SSF103481	Multidrug resistance efflux transporter EmrE
YPN_0129	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
YPN_0130	SSF56931	Outer membrane phospholipase A (OMPLA)
YPN_0131	SSF47819	HRDC-like
YPN_0131	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0134	SSF53474	alpha/beta-Hydrolases
YPN_0135	SSF56784	HAD-like
YPN_0137	SSF51695	PLC-like phosphodiesterases
YPN_0138	SSF51905	FAD/NAD(P)-binding domain
YPN_0139	SSF51905	FAD/NAD(P)-binding domain
YPN_0140	SSF46548	alpha-helical ferredoxin
YPN_0143	SSF64307	SirA-like
YPN_0144	SSF55008	HMA, heavy metal-associated domain
YPN_0144	SSF56784	HAD-like
YPN_0144	SSF81653	Calcium ATPase, transduction domain A
YPN_0144	SSF81665	Calcium ATPase, transmembrane domain M
YPN_0149	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_0150	SSF47364	Domain of the SRP/SRP receptor G-proteins
YPN_0150	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0151	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0153	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
YPN_0153	SSF88946	Sigma2 domain of RNA polymerase sigma factors
YPN_0154	SSF143422	Transposase IS200-like
YPN_0155	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPN_0156	SSF53822	Periplasmic binding protein-like I
YPN_0159	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0160	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0165	SSF49354	PapD-like
YPN_0168	SSF53850	Periplasmic binding protein-like II
YPN_0169	SSF161098	MetI-like
YPN_0170	SSF161098	MetI-like
YPN_0171	SSF50331	MOP-like
YPN_0171	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0172	SSF51695	PLC-like phosphodiesterases
YPN_0174	SSF103481	Multidrug resistance efflux transporter EmrE
YPN_0175	SSF46785	"Winged helix" DNA-binding domain
YPN_0175	SSF53850	Periplasmic binding protein-like II
YPN_0176	SSF51726	UROD/MetE-like
YPN_0177	SSF53474	alpha/beta-Hydrolases
YPN_0178	SSF53167	Purine and uridine phosphorylases
YPN_0179	SSF52799	(Phosphotyrosine protein) phosphatases II
YPN_0183	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_0184	SSF55718	SCP-like
YPN_0185	SSF56112	Protein kinase-like (PK-like)
YPN_0189	SSF51556	Metallo-dependent hydrolases
YPN_0190	SSF46689	Homeodomain-like
YPN_0190	SSF53098	Ribonuclease H-like
YPN_0191	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0192	SSF51556	Metallo-dependent hydrolases
YPN_0193	SSF51569	Aldolase
YPN_0194	SSF82679	N-utilization substance G protein NusG, N-terminal domain
YPN_0195	SSF143968	UbiD C-terminal domain-like
YPN_0195	SSF50475	FMN-binding split barrel
YPN_0196	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
YPN_0196	SSF63380	Riboflavin synthase domain-like
YPN_0197	SSF53901	Thiolase-like
YPN_0198	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPN_0198	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_0198	SSF52096	ClpP/crotonase
YPN_0199	SSF55920	Creatinase/aminopeptidase
YPN_0200	SSF54211	Ribosomal protein S5 domain 2-like
YPN_0201	SSF143422	Transposase IS200-like
YPN_0202	SSF54211	Ribosomal protein S5 domain 2-like
YPN_0202	SSF54980	EF-G C-terminal domain-like
YPN_0204	SSF52218	Flavoproteins
YPN_0205	SSF56176	FAD-binding/transporter-associated domain-like
YPN_0205	SSF56194	Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
YPN_0206	SSF46785	"Winged helix" DNA-binding domain
YPN_0206	SSF50037	C-terminal domain of transcriptional repressors
YPN_0206	SSF55681	Class II aaRS and biotin synthetases
YPN_0207	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0208	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPN_0209	SSF46689	Homeodomain-like
YPN_0209	SSF53098	Ribonuclease H-like
YPN_0210	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0211	SSF50447	Translation proteins
YPN_0211	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
YPN_0211	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0212	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
YPN_0214	SSF50104	Translation proteins SH3-like domain
YPN_0214	SSF82679	N-utilization substance G protein NusG, N-terminal domain
YPN_0215	SSF46906	Ribosomal protein L11, C-terminal domain
YPN_0215	SSF54747	Ribosomal L11/L12e N-terminal domain
YPN_0216	SSF56808	Ribosomal protein L1
YPN_0217	SSF160369	Ribosomal protein L10-like
YPN_0218	SSF48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain
YPN_0218	SSF54736	ClpS-like
YPN_0219	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
YPN_0220	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
YPN_0221	SSF143422	Transposase IS200-like
YPN_0222	SSF102114	Radical SAM enzymes
YPN_0223	SSF110399	ThiG-like
YPN_0224	SSF54285	MoaD/ThiS
YPN_0225	SSF69572	Activating enzymes of the ubiquitin-like proteins
YPN_0226	SSF51391	Thiamin phosphate synthase
YPN_0229	SSF55811	Nudix
YPN_0231	SSF51726	UROD/MetE-like
YPN_0234	SSF47729	IHF-like DNA-binding proteins
YPN_0236	SSF51246	Rudiment single hybrid motif
YPN_0236	SSF52440	PreATP-grasp domain
YPN_0236	SSF56059	Glutathione synthetase ATP-binding domain-like
YPN_0237	SSF52335	Methylglyoxal synthase-like
YPN_0237	SSF53927	Cytidine deaminase-like
YPN_0239	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0240	SSF53448	Nucleotide-diphospho-sugar transferases
YPN_0242	SSF56112	Protein kinase-like (PK-like)
YPN_0243	SSF52833	Thioredoxin-like
YPN_0244	SSF47807	5' to 3' exonuclease, C-terminal subdomain
YPN_0244	SSF53098	Ribonuclease H-like
YPN_0244	SSF56672	DNA/RNA polymerases
YPN_0244	SSF88723	PIN domain-like
YPN_0245	SSF143422	Transposase IS200-like
YPN_0246	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0248	SSF102114	Radical SAM enzymes
YPN_0249	SSF46689	Homeodomain-like
YPN_0249	SSF52172	CheY-like
YPN_0249	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0250	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPN_0250	SSF55785	PYP-like sensor domain (PAS domain)
YPN_0250	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_0251	SSF54368	Glutamine synthetase, N-terminal domain
YPN_0251	SSF55931	Glutamine synthetase/guanido kinase
YPN_0252	SSF50447	Translation proteins
YPN_0252	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0252	SSF54980	EF-G C-terminal domain-like
YPN_0253	SSF56784	HAD-like
YPN_0255	SSF69500	DTD-like
YPN_0256	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0257	SSF46689	Homeodomain-like
YPN_0257	SSF53098	Ribonuclease H-like
YPN_0258	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0262	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_0263	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_0271	SSF46689	Homeodomain-like
YPN_0272	SSF52794	PTS system IIB component-like
YPN_0273	SSF52794	PTS system IIB component-like
YPN_0275	SSF47831	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
YPN_0275	SSF51621	Phosphoenolpyruvate/pyruvate domain
YPN_0275	SSF52009	Phosphohistidine domain
YPN_0275	SSF55594	HPr-like
YPN_0275	SSF55804	Phoshotransferase/anion transport protein
YPN_0277	SSF54909	Dimeric alpha+beta barrel
YPN_0278	SSF51569	Aldolase
YPN_0279	SSF53822	Periplasmic binding protein-like I
YPN_0282	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0285	SSF100950	NagB/RpiA/CoA transferase-like
YPN_0286	SSF53067	Actin-like ATPase domain
YPN_0287	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPN_0290	SSF111369	HlyD-like secretion proteins
YPN_0291	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
YPN_0291	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
YPN_0291	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
YPN_0294	SSF51126	Pectin lyase-like
YPN_0295	SSF55073	Nucleotide cyclase
YPN_0298	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_0299	SSF102220	DNA polymerase III psi subunit
YPN_0300	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPN_0301	SSF50447	Translation proteins
YPN_0301	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0301	SSF54980	EF-G C-terminal domain-like
YPN_0304	SSF52151	FabD/lysophospholipase-like
YPN_0305	SSF51556	Metallo-dependent hydrolases
YPN_0307	SSF51569	Aldolase
YPN_0308	SSF47648	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
YPN_0308	SSF52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
YPN_0309	SSF52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
YPN_0309	SSF54680	Pyrimidine nucleoside phosphorylase C-terminal domain
YPN_0310	SSF143856	DeoB insert domain-like
YPN_0310	SSF53649	Alkaline phosphatase-like
YPN_0311	SSF53167	Purine and uridine phosphorylases
YPN_0313	SSF56784	HAD-like
YPN_0314	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0314	SSF54211	Ribosomal protein S5 domain 2-like
YPN_0315	SSF47413	lambda repressor-like DNA-binding domains
YPN_0315	SSF52374	Nucleotidylyl transferase
YPN_0315	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0316	SSF140931	Fic-like
YPN_0317	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0318	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0319	SSF103088	OmpA-like
YPN_0320	SSF55073	Nucleotide cyclase
YPN_0322	SSF56784	HAD-like
YPN_0322	SSF81653	Calcium ATPase, transduction domain A
YPN_0322	SSF81660	Metal cation-transporting ATPase, ATP-binding domain N
YPN_0322	SSF81665	Calcium ATPase, transmembrane domain M
YPN_0323	SSF48435	Bacterial muramidases
YPN_0323	SSF53955	Lysozyme-like
YPN_0324	SSF48295	TrpR-like
YPN_0325	SSF52972	ITPase-like
YPN_0326	SSF53254	Phosphoglycerate mutase-like
YPN_0327	SSF46689	Homeodomain-like
YPN_0327	SSF55136	Probable bacterial effector-binding domain
YPN_0329	SSF46894	C-terminal effector domain of the bipartite response regulators
YPN_0329	SSF52172	CheY-like
YPN_0331	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_0331	SSF53633	Carbamate kinase-like
YPN_0331	SSF55021	ACT-like
YPN_0331	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPN_0332	SSF54211	Ribosomal protein S5 domain 2-like
YPN_0332	SSF55060	GHMP Kinase, C-terminal domain
YPN_0333	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
YPN_0335	SSF51569	Aldolase
YPN_0337	SSF53218	Molybdenum cofactor biosynthesis proteins
YPN_0338	SSF103473	MFS general substrate transporter
YPN_0339	SSF49695	gamma-Crystallin-like
YPN_0339	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPN_0341	SSF100920	Heat shock protein 70kD (HSP70), peptide-binding domain
YPN_0341	SSF100934	Heat shock protein 70kD (HSP70), C-terminal subdomain
YPN_0341	SSF53067	Actin-like ATPase domain
YPN_0342	SSF46565	Chaperone J-domain
YPN_0342	SSF49493	HSP40/DnaJ peptide-binding domain
YPN_0342	SSF57938	DnaJ/Hsp40 cysteine-rich domain
YPN_0344	SSF46785	"Winged helix" DNA-binding domain
YPN_0344	SSF53850	Periplasmic binding protein-like II
YPN_0345	SSF46992	Ribosomal protein S20
YPN_0346	SSF52374	Nucleotidylyl transferase
YPN_0346	SSF82114	Riboflavin kinase-like
YPN_0347	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
YPN_0347	SSF50677	ValRS/IleRS/LeuRS editing domain
YPN_0347	SSF52374	Nucleotidylyl transferase
YPN_0349	SSF54534	FKBP-like
YPN_0352	SSF143422	Transposase IS200-like
YPN_0353	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_0353	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPN_0354	SSF52021	Carbamoyl phosphate synthetase, small subunit N-terminal domain
YPN_0354	SSF52317	Class I glutamine amidotransferase-like
YPN_0355	SSF48108	Carbamoyl phosphate synthetase, large subunit connection domain
YPN_0355	SSF52335	Methylglyoxal synthase-like
YPN_0355	SSF52440	PreATP-grasp domain
YPN_0355	SSF56059	Glutathione synthetase ATP-binding domain-like
YPN_0359	SSF53597	Dihydrofolate reductase-like
YPN_0360	SSF143422	Transposase IS200-like
YPN_0364	SSF56300	Metallo-dependent phosphatases
YPN_0365	SSF110069	ApaG-like
YPN_0366	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_0367	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
YPN_0368	SSF109998	Triger factor/SurA peptide-binding domain-like
YPN_0368	SSF54534	FKBP-like
YPN_0370	SSF46565	Chaperone J-domain
YPN_0371	SSF55120	Pseudouridine synthase
YPN_0377	SSF141452	Hcp1-like
YPN_0381	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0381	SSF81923	Double Clp-N motif
YPN_0382	SSF69255	gp5 N-terminal domain-like
YPN_0382	SSF69279	Phage tail proteins
YPN_0382	SSF69349	Phage fibre proteins
YPN_0383	SSF141571	Pentapeptide repeat-like
YPN_0384	SSF141571	Pentapeptide repeat-like
YPN_0389	SSF103088	OmpA-like
YPN_0390	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0392	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0393	SSF53098	Ribonuclease H-like
YPN_0393	SSF56672	DNA/RNA polymerases
YPN_0395	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0396	SSF161098	MetI-like
YPN_0397	SSF53850	Periplasmic binding protein-like II
YPN_0398	SSF46785	"Winged helix" DNA-binding domain
YPN_0398	SSF53850	Periplasmic binding protein-like II
YPN_0399	SSF103473	MFS general substrate transporter
YPN_0400	SSF52016	LeuD/IlvD-like
YPN_0401	SSF53732	Aconitase iron-sulfur domain
YPN_0402	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
YPN_0403	SSF110921	2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
YPN_0403	SSF51569	Aldolase
YPN_0404	SSF143422	Transposase IS200-like
YPN_0405	SSF46785	"Winged helix" DNA-binding domain
YPN_0405	SSF53850	Periplasmic binding protein-like II
YPN_0406	SSF56801	Acetyl-CoA synthetase-like
YPN_0407	SSF52467	DHS-like NAD/FAD-binding domain
YPN_0407	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
YPN_0408	SSF55021	ACT-like
YPN_0409	SSF143422	Transposase IS200-like
YPN_0410	SSF47413	lambda repressor-like DNA-binding domains
YPN_0410	SSF53822	Periplasmic binding protein-like I
YPN_0412	SSF89447	AbrB/MazE/MraZ-like
YPN_0413	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_0413	SSF81799	Putative methyltransferase TM0872, insert domain
YPN_0415	SSF56519	Penicillin binding protein dimerisation domain
YPN_0415	SSF56601	beta-lactamase/transpeptidase-like
YPN_0416	SSF53244	MurD-like peptide ligases, peptide-binding domain
YPN_0416	SSF53623	MurD-like peptide ligases, catalytic domain
YPN_0416	SSF63418	MurE/MurF N-terminal domain
YPN_0417	SSF53244	MurD-like peptide ligases, peptide-binding domain
YPN_0417	SSF53623	MurD-like peptide ligases, catalytic domain
YPN_0417	SSF63418	MurE/MurF N-terminal domain
YPN_0419	SSF51984	MurCD N-terminal domain
YPN_0419	SSF53244	MurD-like peptide ligases, peptide-binding domain
YPN_0419	SSF53623	MurD-like peptide ligases, catalytic domain
YPN_0421	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPN_0422	SSF51984	MurCD N-terminal domain
YPN_0422	SSF53244	MurD-like peptide ligases, peptide-binding domain
YPN_0422	SSF53623	MurD-like peptide ligases, catalytic domain
YPN_0423	SSF52440	PreATP-grasp domain
YPN_0423	SSF56059	Glutathione synthetase ATP-binding domain-like
YPN_0425	SSF53067	Actin-like ATPase domain
YPN_0426	SSF52490	Tubulin nucleotide-binding domain-like
YPN_0426	SSF55307	Tubulin C-terminal domain-like
YPN_0427	SSF54211	Ribosomal protein S5 domain 2-like
YPN_0430	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0430	SSF81767	Pre-protein crosslinking domain of SecA
YPN_0430	SSF81886	Helical scaffold and wing domains of SecA
YPN_0431	SSF55811	Nudix
YPN_0433	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0434	SSF46689	Homeodomain-like
YPN_0434	SSF53098	Ribonuclease H-like
YPN_0445	SSF46785	"Winged helix" DNA-binding domain
YPN_0445	SSF48008	GntR ligand-binding domain-like
YPN_0446	SSF103473	MFS general substrate transporter
YPN_0447	SSF51556	Metallo-dependent hydrolases
YPN_0448	SSF51556	Metallo-dependent hydrolases
YPN_0449	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPN_0449	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_0452	SSF143422	Transposase IS200-like
YPN_0453	SSF118215	Proton glutamate symport protein
YPN_0454	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_0454	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPN_0456	SSF103515	Autotransporter
YPN_0456	SSF51126	Pectin lyase-like
YPN_0457	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_0458	SSF51395	FMN-linked oxidoreductases
YPN_0458	SSF51905	FAD/NAD(P)-binding domain
YPN_0458	SSF51971	Nucleotide-binding domain
YPN_0460	SSF56112	Protein kinase-like (PK-like)
YPN_0461	SSF81606	PP2C-like
YPN_0462	SSF53300	vWA-like
YPN_0463	SSF53300	vWA-like
YPN_0465	SSF53300	vWA-like
YPN_0467	SSF51126	Pectin lyase-like
YPN_0469	SSF103515	Autotransporter
YPN_0472	SSF50331	MOP-like
YPN_0472	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0473	SSF48208	Six-hairpin glycosidases
YPN_0474	SSF47413	lambda repressor-like DNA-binding domains
YPN_0474	SSF53822	Periplasmic binding protein-like I
YPN_0475	SSF53850	Periplasmic binding protein-like II
YPN_0476	SSF161098	MetI-like
YPN_0477	SSF161098	MetI-like
YPN_0479	SSF51445	(Trans)glycosidases
YPN_0479	SSF52279	Beta-D-glucan exohydrolase, C-terminal domain
YPN_0480	SSF56954	Outer membrane efflux proteins (OEP)
YPN_0482	SSF111369	HlyD-like secretion proteins
YPN_0485	SSF53383	PLP-dependent transferases
YPN_0487	SSF55961	Bet v1-like
YPN_0490	SSF55298	YjgF-like
YPN_0491	SSF55298	YjgF-like
YPN_0492	SSF54909	Dimeric alpha+beta barrel
YPN_0493	SSF52833	Thioredoxin-like
YPN_0494	SSF46785	"Winged helix" DNA-binding domain
YPN_0494	SSF53850	Periplasmic binding protein-like II
YPN_0496	SSF140931	Fic-like
YPN_0498	SSF54060	His-Me finger endonucleases
YPN_0499	SSF160631	SMI1/KNR4-like
YPN_0500	SSF160631	SMI1/KNR4-like
YPN_0503	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
YPN_0503	SSF88946	Sigma2 domain of RNA polymerase sigma factors
YPN_0504	SSF117023	DNA primase DnaG, C-terminal domain
YPN_0504	SSF56731	DNA primase core
YPN_0504	SSF57783	Zinc beta-ribbon
YPN_0506	SSF53067	Actin-like ATPase domain
YPN_0508	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
YPN_0510	SSF81301	Nucleotidyltransferase
YPN_0510	SSF81891	Poly A polymerase C-terminal region-like
YPN_0512	SSF55154	CYTH-like phosphatases
YPN_0513	SSF81301	Nucleotidyltransferase
YPN_0513	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
YPN_0514	SSF52374	Nucleotidylyl transferase
YPN_0514	SSF53613	Ribokinase-like
YPN_0517	SSF55821	YrdC/RibB
YPN_0518	SSF53213	LigB-like
YPN_0519	SSF52440	PreATP-grasp domain
YPN_0519	SSF56059	Glutathione synthetase ATP-binding domain-like
YPN_0521	SSF56954	Outer membrane efflux proteins (OEP)
YPN_0522	SSF55811	Nudix
YPN_0524	SSF56300	Metallo-dependent phosphatases
YPN_0525	SSF53474	alpha/beta-Hydrolases
YPN_0526	SSF54211	Ribosomal protein S5 domain 2-like
YPN_0526	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_0526	SSF56719	Type II DNA topoisomerase
YPN_0527	SSF46785	"Winged helix" DNA-binding domain
YPN_0527	SSF53850	Periplasmic binding protein-like II
YPN_0528	SSF52218	Flavoproteins
YPN_0529	SSF101904	GyrA/ParC C-terminal domain-like
YPN_0529	SSF56719	Type II DNA topoisomerase
YPN_0530	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
YPN_0531	SSF49503	Cupredoxins
YPN_0532	SSF102114	Radical SAM enzymes
YPN_0534	SSF51430	NAD(P)-linked oxidoreductase
YPN_0535	SSF56796	Dehydroquinate synthase-like
YPN_0536	SSF46689	Homeodomain-like
YPN_0538	SSF53383	PLP-dependent transferases
YPN_0541	SSF53300	vWA-like
YPN_0544	SSF48452	TPR-like
YPN_0547	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0548	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0554	SSF143422	Transposase IS200-like
YPN_0555	SSF141729	FimD N-terminal domain-like
YPN_0556	SSF49354	PapD-like
YPN_0556	SSF49584	Periplasmic chaperone C-domain
YPN_0557	SSF49401	Bacterial adhesins
YPN_0558	SSF53807	"Helical backbone" metal receptor
YPN_0564	SSF160544	EscU C-terminal domain-like
YPN_0568	SSF101801	Surface presentation of antigens (SPOA)
YPN_0569	SSF101801	Surface presentation of antigens (SPOA)
YPN_0570	SSF46689	Homeodomain-like
YPN_0570	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0573	SSF48029	FliG
YPN_0575	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0577	SSF140566	FlgN-like
YPN_0578	SSF101498	Anti-sigma factor FlgM
YPN_0583	SSF117143	Flagellar hook protein flgE
YPN_0584	SSF117143	Flagellar hook protein flgE
YPN_0585	SSF117143	Flagellar hook protein flgE
YPN_0589	SSF64518	Phase 1 flagellin
YPN_0590	SSF64518	Phase 1 flagellin
YPN_0593	SSF46894	C-terminal effector domain of the bipartite response regulators
YPN_0594	SSF64518	Phase 1 flagellin
YPN_0595	SSF46689	Homeodomain-like
YPN_0595	SSF48295	TrpR-like
YPN_0596	SSF53098	Ribonuclease H-like
YPN_0597	SSF46915	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
YPN_0597	SSF50249	Nucleic acid-binding proteins
YPN_0597	SSF54211	Ribosomal protein S5 domain 2-like
YPN_0597	SSF54791	Eukaryotic type KH-domain (KH-domain type I)
YPN_0597	SSF55666	Ribonuclease PH domain 2-like
YPN_0598	SSF48452	TPR-like
YPN_0599	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0602	SSF47413	lambda repressor-like DNA-binding domains
YPN_0603	SSF51679	Bacterial luciferase-like
YPN_0604	SSF111369	HlyD-like secretion proteins
YPN_0605	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
YPN_0605	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
YPN_0605	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
YPN_0606	SSF56954	Outer membrane efflux proteins (OEP)
YPN_0608	SSF51391	Thiamin phosphate synthase
YPN_0610	SSF55718	SCP-like
YPN_0611	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPN_0612	SSF82771	GIY-YIG endonuclease
YPN_0613	SSF48230	Chondroitin AC/alginate lyase
YPN_0614	SSF48230	Chondroitin AC/alginate lyase
YPN_0615	SSF53850	Periplasmic binding protein-like II
YPN_0616	SSF161098	MetI-like
YPN_0617	SSF161098	MetI-like
YPN_0618	SSF50331	MOP-like
YPN_0618	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0619	SSF48230	Chondroitin AC/alginate lyase
YPN_0620	SSF50475	FMN-binding split barrel
YPN_0621	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_0622	SSF56281	Metallo-hydrolase/oxidoreductase
YPN_0623	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0624	SSF51338	Composite domain of metallo-dependent hydrolases
YPN_0624	SSF51556	Metallo-dependent hydrolases
YPN_0625	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0626	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0629	SSF159709	PhnH-like
YPN_0630	SSF159709	PhnH-like
YPN_0632	SSF46785	"Winged helix" DNA-binding domain
YPN_0632	SSF64288	Chorismate lyase-like
YPN_0633	SSF102114	Radical SAM enzymes
YPN_0634	SSF51998	PFL-like glycyl radical enzymes
YPN_0635	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0636	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0637	SSF161098	MetI-like
YPN_0638	SSF161098	MetI-like
YPN_0639	SSF53850	Periplasmic binding protein-like II
YPN_0640	SSF53850	Periplasmic binding protein-like II
YPN_0641	SSF51197	Clavaminate synthase-like
YPN_0642	SSF53671	Aspartate/ornithine carbamoyltransferase
YPN_0643	SSF89946	Hypothetical protein VC0424
YPN_0644	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPN_0645	SSF46589	tRNA-binding arm
YPN_0645	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
YPN_0645	SSF50677	ValRS/IleRS/LeuRS editing domain
YPN_0645	SSF52374	Nucleotidylyl transferase
YPN_0646	SSF102400	DNA polymerase III chi subunit
YPN_0647	SSF52949	Macro domain-like
YPN_0647	SSF53187	Zn-dependent exopeptidases
YPN_0650	SSF143422	Transposase IS200-like
YPN_0651	SSF56349	DNA breaking-rejoining enzymes
YPN_0653	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_0654	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0655	SSF46689	Homeodomain-like
YPN_0655	SSF53098	Ribonuclease H-like
YPN_0656	SSF143422	Transposase IS200-like
YPN_0657	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
YPN_0658	SSF160950	YacF-like
YPN_0659	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0660	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
YPN_0662	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0663	SSF54523	Pili subunits
YPN_0664	SSF51690	Nicotinate/Quinolinate PRTase C-terminal domain-like
YPN_0664	SSF54675	Nicotinate/Quinolinate PRTase N-terminal domain-like
YPN_0665	SSF55846	N-acetylmuramoyl-L-alanine amidase-like
YPN_0668	SSF46785	"Winged helix" DNA-binding domain
YPN_0668	SSF48008	GntR ligand-binding domain-like
YPN_0669	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
YPN_0669	SSF52922	TK C-terminal domain-like
YPN_0670	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
YPN_0670	SSF51230	Single hybrid motif
YPN_0670	SSF52777	CoA-dependent acyltransferases
YPN_0671	SSF51905	FAD/NAD(P)-binding domain
YPN_0671	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
YPN_0672	SSF143422	Transposase IS200-like
YPN_0673	SSF52016	LeuD/IlvD-like
YPN_0673	SSF53732	Aconitase iron-sulfur domain
YPN_0673	SSF74778	Aconitase B, N-terminal domain
YPN_0675	SSF103481	Multidrug resistance efflux transporter EmrE
YPN_0676	SSF56276	S-adenosylmethionine decarboxylase
YPN_0677	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_0679	SSF49503	Cupredoxins
YPN_0680	SSF53271	PRTase-like
YPN_0681	SSF53056	beta-carbonic anhydrase, cab
YPN_0682	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0685	SSF88713	Glycoside hydrolase/deacetylase
YPN_0686	SSF50692	ADC-like
YPN_0687	SSF52374	Nucleotidylyl transferase
YPN_0688	SSF51621	Phosphoenolpyruvate/pyruvate domain
YPN_0689	SSF55083	6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
YPN_0690	SSF81301	Nucleotidyltransferase
YPN_0690	SSF81891	Poly A polymerase C-terminal region-like
YPN_0691	SSF52374	Nucleotidylyl transferase
YPN_0693	SSF109635	DnaK suppressor protein DksA, alpha-hairpin domain
YPN_0693	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
YPN_0695	SSF55144	LigT-like
YPN_0696	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0697	SSF53955	Lysozyme-like
YPN_0697	SSF56601	beta-lactamase/transpeptidase-like
YPN_0698	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0699	SSF53807	"Helical backbone" metal receptor
YPN_0700	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
YPN_0701	SSF53383	PLP-dependent transferases
YPN_0702	SSF81340	Clc chloride channel
YPN_0703	SSF89360	HesB-like domain
YPN_0706	SSF53807	"Helical backbone" metal receptor
YPN_0707	SSF53167	Purine and uridine phosphorylases
YPN_0708	SSF109604	HD-domain/PDEase-like
YPN_0709	SSF50156	PDZ domain-like
YPN_0709	SSF50494	Trypsin-like serine proteases
YPN_0710	SSF158472	HAMP domain-like
YPN_0710	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
YPN_0710	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPN_0710	SSF52172	CheY-like
YPN_0710	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_0713	SSF109604	HD-domain/PDEase-like
YPN_0713	SSF55021	ACT-like
YPN_0713	SSF81271	TGS-like
YPN_0713	SSF81301	Nucleotidyltransferase
YPN_0714	SSF101386	all-alpha NTP pyrophosphatases
YPN_0715	SSF52317	Class I glutamine amidotransferase-like
YPN_0715	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0716	SSF51604	Enolase C-terminal domain-like
YPN_0716	SSF54826	Enolase N-terminal domain-like
YPN_0717	SSF49329	Cu,Zn superoxide dismutase-like
YPN_0718	SSF102114	Radical SAM enzymes
YPN_0719	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
YPN_0720	SSF52218	Flavoproteins
YPN_0720	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
YPN_0720	SSF63380	Riboflavin synthase domain-like
YPN_0721	SSF55124	Nitrite/Sulfite reductase N-terminal domain-like
YPN_0721	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
YPN_0722	SSF52402	Adenine nucleotide alpha hydrolases-like
YPN_0723	SSF52402	Adenine nucleotide alpha hydrolases-like
YPN_0724	SSF143100	TTHA1013/TTHA0281-like
YPN_0725	SSF54786	YcfA/nrd intein domain
YPN_0726	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_0726	SSF53790	Tetrapyrrole methylase
YPN_0726	SSF75615	Siroheme synthase middle domains-like
YPN_0727	SSF52402	Adenine nucleotide alpha hydrolases-like
YPN_0728	SSF50447	Translation proteins
YPN_0728	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
YPN_0728	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0729	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0732	SSF53448	Nucleotide-diphospho-sugar transferases
YPN_0733	SSF69765	IpsF-like
YPN_0734	SSF55120	Pseudouridine synthase
YPN_0735	SSF64167	SurE-like
YPN_0736	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_0737	SSF51261	Duplicated hybrid motif
YPN_0738	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
YPN_0738	SSF88946	Sigma2 domain of RNA polymerase sigma factors
YPN_0739	SSF48334	DNA repair protein MutS, domain III
YPN_0739	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0739	SSF53150	DNA repair protein MutS, domain II
YPN_0739	SSF55271	DNA repair protein MutS, domain I
YPN_0741	SSF89623	Ribose/Galactose isomerase RpiB/AlsB
YPN_0742	SSF50129	GroES-like
YPN_0742	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_0743	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_0744	SSF82549	DAK1/DegV-like
YPN_0745	SSF101473	DhaL-like
YPN_0746	SSF100950	NagB/RpiA/CoA transferase-like
YPN_0748	SSF46785	"Winged helix" DNA-binding domain
YPN_0750	SSF53850	Periplasmic binding protein-like II
YPN_0751	SSF46626	Cytochrome c
YPN_0753	SSF56935	Porins
YPN_0756	SSF55920	Creatinase/aminopeptidase
YPN_0758	SSF117457	FumA C-terminal domain-like
YPN_0759	SSF53067	Actin-like ATPase domain
YPN_0760	SSF51658	Xylose isomerase-like
YPN_0763	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0764	SSF143422	Transposase IS200-like
YPN_0765	SSF53822	Periplasmic binding protein-like I
YPN_0766	SSF100950	NagB/RpiA/CoA transferase-like
YPN_0766	SSF46785	"Winged helix" DNA-binding domain
YPN_0767	SSF53639	AraD/HMP-PK domain-like
YPN_0768	SSF50692	ADC-like
YPN_0768	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
YPN_0769	SSF54862	4Fe-4S ferredoxins
YPN_0771	SSF89155	TorD-like
YPN_0772	SSF81342	Transmembrane di-heme cytochromes
YPN_0773	SSF47175	Cytochromes
YPN_0774	SSF48113	Heme-dependent peroxidases
YPN_0775	SSF53822	Periplasmic binding protein-like I
YPN_0776	SSF141318	TM0957-like
YPN_0777	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0779	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
YPN_0780	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
YPN_0780	SSF52922	TK C-terminal domain-like
YPN_0781	SSF53067	Actin-like ATPase domain
YPN_0782	SSF53743	FucI/AraA N-terminal and middle domains
YPN_0784	SSF100950	NagB/RpiA/CoA transferase-like
YPN_0784	SSF46785	"Winged helix" DNA-binding domain
YPN_0785	SSF103473	MFS general substrate transporter
YPN_0786	SSF142433	CinA-like
YPN_0787	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0787	SSF54752	RecA protein, C-terminal domain
YPN_0789	SSF101353	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
YPN_0789	SSF50447	Translation proteins
YPN_0789	SSF55186	ThrRS/AlaRS common domain
YPN_0789	SSF55681	Class II aaRS and biotin synthetases
YPN_0790	SSF117130	CsrA-like
YPN_0791	SSF56784	HAD-like
YPN_0793	SSF55931	Glutamine synthetase/guanido kinase
YPN_0794	SSF63411	LuxS/MPP-like metallohydrolase
YPN_0795	SSF143422	Transposase IS200-like
YPN_0796	SSF46689	Homeodomain-like
YPN_0796	SSF53098	Ribonuclease H-like
YPN_0797	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0798	SSF143422	Transposase IS200-like
YPN_0799	SSF54631	CBS-domain pair
YPN_0799	SSF56176	FAD-binding/transporter-associated domain-like
YPN_0801	SSF47446	Signal peptide-binding domain
YPN_0801	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0803	SSF54565	Ribosomal protein S16
YPN_0804	SSF50346	PRC-barrel domain
YPN_0804	SSF50447	Translation proteins
YPN_0805	SSF75217	alpha/beta knot
YPN_0806	SSF50104	Translation proteins SH3-like domain
YPN_0807	SSF143422	Transposase IS200-like
YPN_0812	SSF52172	CheY-like
YPN_0813	SSF51569	Aldolase
YPN_0814	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPN_0814	SSF48600	Chorismate mutase II
YPN_0814	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_0815	SSF48600	Chorismate mutase II
YPN_0815	SSF53850	Periplasmic binding protein-like II
YPN_0815	SSF55021	ACT-like
YPN_0816	SSF143422	Transposase IS200-like
YPN_0817	SSF69754	Ribosome binding protein Y (YfiA homologue)
YPN_0818	SSF48452	TPR-like
YPN_0819	SSF55120	Pseudouridine synthase
YPN_0819	SSF55174	Alpha-L RNA-binding motif
YPN_0820	SSF64438	CNF1/YfiH-like putative cysteine hydrolases
YPN_0821	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0821	SSF81923	Double Clp-N motif
YPN_0823	SSF56024	Phospholipase D/nuclease
YPN_0824	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_0824	SSF52210	Succinyl-CoA synthetase domains
YPN_0824	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPN_0824	SSF56059	Glutathione synthetase ATP-binding domain-like
YPN_0826	SSF52833	Thioredoxin-like
YPN_0827	SSF55315	L30e-like
YPN_0827	SSF75217	alpha/beta knot
YPN_0828	SSF103473	MFS general substrate transporter
YPN_0829	SSF111369	HlyD-like secretion proteins
YPN_0830	SSF46785	"Winged helix" DNA-binding domain
YPN_0833	SSF103473	MFS general substrate transporter
YPN_0834	SSF54427	NTF2-like
YPN_0835	SSF75304	Amidase signature (AS) enzymes
YPN_0838	SSF46689	Homeodomain-like
YPN_0838	SSF53697	SIS domain
YPN_0839	SSF53850	Periplasmic binding protein-like II
YPN_0840	SSF161098	MetI-like
YPN_0841	SSF161098	MetI-like
YPN_0842	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0843	SSF53383	PLP-dependent transferases
YPN_0844	SSF53187	Zn-dependent exopeptidases
YPN_0844	SSF55031	Bacterial exopeptidase dimerisation domain
YPN_0846	SSF51126	Pectin lyase-like
YPN_0850	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
YPN_0850	SSF56645	Acyl-CoA dehydrogenase NM domain-like
YPN_0851	SSF53697	SIS domain
YPN_0852	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
YPN_0853	SSF141523	L,D-transpeptidase catalytic domain-like
YPN_0860	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
YPN_0860	SSF54292	2Fe-2S ferredoxin-like
YPN_0860	SSF63380	Riboflavin synthase domain-like
YPN_0861	SSF143631	ApbE-like
YPN_0863	SSF51695	PLC-like phosphodiesterases
YPN_0864	SSF100879	Lesion bypass DNA polymerase (Y-family), little finger domain
YPN_0864	SSF56672	DNA/RNA polymerases
YPN_0865	SSF53187	Zn-dependent exopeptidases
YPN_0866	SSF46785	"Winged helix" DNA-binding domain
YPN_0866	SSF53850	Periplasmic binding protein-like II
YPN_0867	SSF49299	PKD domain
YPN_0867	SSF81296	E set domains
YPN_0868	SSF53271	PRTase-like
YPN_0869	SSF53474	alpha/beta-Hydrolases
YPN_0871	SSF53633	Carbamate kinase-like
YPN_0871	SSF88697	PUA domain-like
YPN_0872	SSF53720	ALDH-like
YPN_0876	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_0877	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_0878	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0879	SSF51182	RmlC-like cupins
YPN_0881	SSF53067	Actin-like ATPase domain
YPN_0882	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0883	SSF56300	Metallo-dependent phosphatases
YPN_0884	SSF46894	C-terminal effector domain of the bipartite response regulators
YPN_0884	SSF52172	CheY-like
YPN_0885	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPN_0885	SSF55785	PYP-like sensor domain (PAS domain)
YPN_0885	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_0886	SSF53850	Periplasmic binding protein-like II
YPN_0889	SSF51011	Glycosyl hydrolase domain
YPN_0889	SSF51445	(Trans)glycosidases
YPN_0889	SSF81296	E set domains
YPN_0890	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_0891	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
YPN_0892	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
YPN_0893	SSF52833	Thioredoxin-like
YPN_0895	SSF111337	QueA-like
YPN_0896	SSF51713	tRNA-guanine transglycosylase
YPN_0898	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
YPN_0899	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
YPN_0900	SSF143422	Transposase IS200-like
YPN_0901	SSF143422	Transposase IS200-like
YPN_0905	SSF53597	Dihydrofolate reductase-like
YPN_0905	SSF53927	Cytidine deaminase-like
YPN_0906	SSF52121	Lumazine synthase
YPN_0907	SSF48013	NusB-like
YPN_0908	SSF55326	PurM N-terminal domain-like
YPN_0908	SSF56042	PurM C-terminal domain-like
YPN_0909	SSF101307	YutG-like
YPN_0910	SSF143422	Transposase IS200-like
YPN_0911	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
YPN_0911	SSF52922	TK C-terminal domain-like
YPN_0912	SSF48576	Terpenoid synthases
YPN_0913	SSF116842	XseB-like
YPN_0915	SSF143437	THUMP domain-like
YPN_0915	SSF52402	Adenine nucleotide alpha hydrolases-like
YPN_0915	SSF52821	Rhodanese/Cell cycle control phosphatase
YPN_0916	SSF52317	Class I glutamine amidotransferase-like
YPN_0917	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPN_0917	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_0918	SSF89963	YajQ-like
YPN_0919	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0920	SSF46689	Homeodomain-like
YPN_0920	SSF53098	Ribonuclease H-like
YPN_0921	SSF89963	YajQ-like
YPN_0922	SSF103473	MFS general substrate transporter
YPN_0925	SSF81452	Cytochrome c oxidase subunit III-like
YPN_0926	SSF81442	Cytochrome c oxidase subunit I-like
YPN_0927	SSF49503	Cupredoxins
YPN_0927	SSF81464	Cytochrome c oxidase subunit II-like, transmembrane region
YPN_0928	SSF111364	Tsx-like channel
YPN_0929	SSF103473	MFS general substrate transporter
YPN_0931	SSF82657	BolA-like
YPN_0932	SSF102735	Trigger factor ribosome-binding domain
YPN_0932	SSF109998	Triger factor/SurA peptide-binding domain-like
YPN_0932	SSF54534	FKBP-like
YPN_0933	SSF52096	ClpP/crotonase
YPN_0934	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0934	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
YPN_0935	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0935	SSF54211	Ribosomal protein S5 domain 2-like
YPN_0935	SSF88697	PUA domain-like
YPN_0936	SSF47729	IHF-like DNA-binding proteins
YPN_0937	SSF109998	Triger factor/SurA peptide-binding domain-like
YPN_0937	SSF54534	FKBP-like
YPN_0938	SSF47781	RuvA domain 2-like
YPN_0939	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
YPN_0940	SSF52402	Adenine nucleotide alpha hydrolases-like
YPN_0941	SSF53850	Periplasmic binding protein-like II
YPN_0942	SSF56784	HAD-like
YPN_0943	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
YPN_0944	SSF46785	"Winged helix" DNA-binding domain
YPN_0944	SSF54909	Dimeric alpha+beta barrel
YPN_0945	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0945	SSF90123	ABC transporter transmembrane region
YPN_0946	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0946	SSF90123	ABC transporter transmembrane region
YPN_0947	SSF54913	GlnB-like
YPN_0948	SSF111352	Ammonium transporter
YPN_0949	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
YPN_0951	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
YPN_0952	SSF68989	Hemolysin expression modulating protein HHA
YPN_0955	SSF57840	Ribosomal protein L36
YPN_0956	SSF143800	L28p-like
YPN_0957	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
YPN_0957	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
YPN_0957	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
YPN_0958	SSF111369	HlyD-like secretion proteins
YPN_0959	SSF46689	Homeodomain-like
YPN_0959	SSF48498	Tetracyclin repressor-like, C-terminal domain
YPN_0960	SSF75169	DsrEFH-like
YPN_0961	SSF50182	Sm-like ribonucleoproteins
YPN_0961	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
YPN_0961	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
YPN_0965	SSF53271	PRTase-like
YPN_0966	SSF48019	post-AAA+ oligomerization domain-like
YPN_0966	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0967	SSF82607	YbaB-like
YPN_0968	SSF111304	Recombination protein RecR
YPN_0970	SSF110942	HSP90 C-terminal domain
YPN_0970	SSF54211	Ribosomal protein S5 domain 2-like
YPN_0970	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_0971	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_0972	SSF53800	Chelatase
YPN_0973	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
YPN_0973	SSF54292	2Fe-2S ferredoxin-like
YPN_0973	SSF63380	Riboflavin synthase domain-like
YPN_0974	SSF53448	Nucleotide-diphospho-sugar transferases
YPN_0975	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_0976	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_0977	SSF53383	PLP-dependent transferases
YPN_0978	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_0979	SSF51905	FAD/NAD(P)-binding domain
YPN_0981	SSF53448	Nucleotide-diphospho-sugar transferases
YPN_0982	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPN_0984	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPN_0985	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_0986	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_0987	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_0988	SSF51182	RmlC-like cupins
YPN_0988	SSF53448	Nucleotide-diphospho-sugar transferases
YPN_0989	SSF53448	Nucleotide-diphospho-sugar transferases
YPN_0990	SSF53738	Phosphoglucomutase, first 3 domains
YPN_0990	SSF55957	Phosphoglucomutase, C-terminal domain
YPN_0993	SSF160355	Bacterial polysaccharide co-polymerase-like
YPN_0994	SSF53613	Ribokinase-like
YPN_0995	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_0996	SSF103473	MFS general substrate transporter
YPN_0997	SSF56300	Metallo-dependent phosphatases
YPN_0998	SSF56300	Metallo-dependent phosphatases
YPN_0999	SSF55816	5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
YPN_1001	SSF55826	YbaK/ProRS associated domain
YPN_1003	SSF55008	HMA, heavy metal-associated domain
YPN_1003	SSF56784	HAD-like
YPN_1003	SSF81653	Calcium ATPase, transduction domain A
YPN_1003	SSF81665	Calcium ATPase, transmembrane domain M
YPN_1004	SSF46955	Putative DNA-binding domain
YPN_1005	SSF141322	NfeD domain-like
YPN_1006	SSF117892	Band 7/SPFH domain
YPN_1007	SSF48452	TPR-like
YPN_1007	SSF52833	Thioredoxin-like
YPN_1008	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_1009	SSF52266	SGNH hydrolase
YPN_1010	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1012	SSF143422	Transposase IS200-like
YPN_1013	SSF51246	Rudiment single hybrid motif
YPN_1013	SSF52440	PreATP-grasp domain
YPN_1013	SSF56059	Glutathione synthetase ATP-binding domain-like
YPN_1014	SSF52255	N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
YPN_1015	SSF56300	Metallo-dependent phosphatases
YPN_1016	SSF50891	Cyclophilin-like
YPN_1017	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
YPN_1017	SSF52374	Nucleotidylyl transferase
YPN_1018	SSF143422	Transposase IS200-like
YPN_1019	SSF55174	Alpha-L RNA-binding motif
YPN_1020	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_1020	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
YPN_1023	SSF56349	DNA breaking-rejoining enzymes
YPN_1026	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
YPN_1027	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_1027	SSF53474	alpha/beta-Hydrolases
YPN_1028	SSF52799	(Phosphotyrosine protein) phosphatases II
YPN_1031	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1032	SSF46689	Homeodomain-like
YPN_1032	SSF53098	Ribonuclease H-like
YPN_1033	SSF46785	"Winged helix" DNA-binding domain
YPN_1033	SSF53850	Periplasmic binding protein-like II
YPN_1034	SSF51430	NAD(P)-linked oxidoreductase
YPN_1035	SSF51430	NAD(P)-linked oxidoreductase
YPN_1038	SSF51445	(Trans)glycosidases
YPN_1038	SSF52279	Beta-D-glucan exohydrolase, C-terminal domain
YPN_1045	SSF103515	Autotransporter
YPN_1045	SSF51126	Pectin lyase-like
YPN_1048	SSF141452	Hcp1-like
YPN_1054	SSF47413	lambda repressor-like DNA-binding domains
YPN_1055	SSF53955	Lysozyme-like
YPN_1055	SSF56601	beta-lactamase/transpeptidase-like
YPN_1056	SSF143422	Transposase IS200-like
YPN_1057	SSF48239	Terpenoid cyclases/Protein prenyltransferases
YPN_1060	SSF46689	Homeodomain-like
YPN_1060	SSF53697	SIS domain
YPN_1061	SSF53720	ALDH-like
YPN_1062	SSF52467	DHS-like NAD/FAD-binding domain
YPN_1062	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
YPN_1063	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_1064	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPN_1065	SSF53822	Periplasmic binding protein-like I
YPN_1066	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1068	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_1068	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPN_1069	SSF53613	Ribokinase-like
YPN_1070	SSF51658	Xylose isomerase-like
YPN_1071	SSF51182	RmlC-like cupins
YPN_1073	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1073	SSF90123	ABC transporter transmembrane region
YPN_1074	SSF54909	Dimeric alpha+beta barrel
YPN_1075	SSF46575	DNA polymerase III theta subunit-like
YPN_1078	SSF46894	C-terminal effector domain of the bipartite response regulators
YPN_1079	SSF50249	Nucleic acid-binding proteins
YPN_1083	SSF102114	Radical SAM enzymes
YPN_1084	SSF55681	Class II aaRS and biotin synthetases
YPN_1085	SSF117991	YbeD/HP0495-like
YPN_1086	SSF56601	beta-lactamase/transpeptidase-like
YPN_1086	SSF69189	Penicillin-binding protein associated domain
YPN_1087	SSF110997	Sporulation related repeat
YPN_1087	SSF50685	Barwin-like endoglucanases
YPN_1089	SSF56519	Penicillin binding protein dimerisation domain
YPN_1089	SSF56601	beta-lactamase/transpeptidase-like
YPN_1090	SSF75217	alpha/beta knot
YPN_1091	SSF81301	Nucleotidyltransferase
YPN_1092	SSF52374	Nucleotidylyl transferase
YPN_1093	SSF48019	post-AAA+ oligomerization domain-like
YPN_1093	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1095	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
YPN_1095	SSF50677	ValRS/IleRS/LeuRS editing domain
YPN_1095	SSF52374	Nucleotidylyl transferase
YPN_1097	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1098	SSF161098	MetI-like
YPN_1099	SSF161098	MetI-like
YPN_1100	SSF53850	Periplasmic binding protein-like II
YPN_1101	SSF56317	Carbon-nitrogen hydrolase
YPN_1102	SSF54631	CBS-domain pair
YPN_1102	SSF56176	FAD-binding/transporter-associated domain-like
YPN_1104	SSF55486	Metalloproteases ("zincins"), catalytic domain
YPN_1105	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1106	SSF102114	Radical SAM enzymes
YPN_1107	SSF51905	FAD/NAD(P)-binding domain
YPN_1109	SSF52402	Adenine nucleotide alpha hydrolases-like
YPN_1109	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
YPN_1110	SSF56784	HAD-like
YPN_1111	SSF46785	"Winged helix" DNA-binding domain
YPN_1111	SSF53067	Actin-like ATPase domain
YPN_1112	SSF51338	Composite domain of metallo-dependent hydrolases
YPN_1112	SSF51556	Metallo-dependent hydrolases
YPN_1113	SSF100950	NagB/RpiA/CoA transferase-like
YPN_1114	SSF51261	Duplicated hybrid motif
YPN_1114	SSF55604	Glucose permease domain IIB
YPN_1115	SSF143422	Transposase IS200-like
YPN_1116	SSF50715	Ribosomal protein L25-like
YPN_1116	SSF52374	Nucleotidylyl transferase
YPN_1118	SSF49384	Carbohydrate-binding domain
YPN_1119	SSF51445	(Trans)glycosidases
YPN_1119	SSF55545	beta-N-acetylhexosaminidase-like domain
YPN_1119	SSF81296	E set domains
YPN_1120	SSF46785	"Winged helix" DNA-binding domain
YPN_1121	SSF52218	Flavoproteins
YPN_1123	SSF53474	alpha/beta-Hydrolases
YPN_1125	SSF46689	Homeodomain-like
YPN_1127	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1128	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1129	SSF46689	Homeodomain-like
YPN_1129	SSF53098	Ribonuclease H-like
YPN_1130	SSF88713	Glycoside hydrolase/deacetylase
YPN_1131	SSF53850	Periplasmic binding protein-like II
YPN_1132	SSF161098	MetI-like
YPN_1133	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1133	SSF54631	CBS-domain pair
YPN_1134	SSF47240	Ferritin-like
YPN_1135	SSF48168	R1 subunit of ribonucleotide reductase, N-terminal domain
YPN_1135	SSF51998	PFL-like glycyl radical enzymes
YPN_1136	SSF52218	Flavoproteins
YPN_1137	SSF52833	Thioredoxin-like
YPN_1139	SSF159894	YgaC/TfoX-N like
YPN_1142	SSF50249	Nucleic acid-binding proteins
YPN_1143	SSF53850	Periplasmic binding protein-like II
YPN_1144	SSF161098	MetI-like
YPN_1145	SSF161098	MetI-like
YPN_1146	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1147	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1149	SSF54111	Urease, gamma-subunit
YPN_1150	SSF51278	Urease, beta-subunit
YPN_1151	SSF51338	Composite domain of metallo-dependent hydrolases
YPN_1151	SSF51556	Metallo-dependent hydrolases
YPN_1152	SSF69287	Urease metallochaperone UreE, N-terminal domain
YPN_1154	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1159	SSF47752	Protein HNS-dependent expression A; HdeA
YPN_1160	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_1160	SSF81324	Voltage-gated potassium channels
YPN_1164	SSF52794	PTS system IIB component-like
YPN_1166	SSF46973	Enzyme IIa from lactose specific PTS, IIa-lac
YPN_1167	SSF46689	Homeodomain-like
YPN_1167	SSF51182	RmlC-like cupins
YPN_1168	SSF88713	Glycoside hydrolase/deacetylase
YPN_1170	SSF47598	Ribbon-helix-helix
YPN_1170	SSF82808	Replication modulator SeqA, C-terminal DNA-binding domain
YPN_1171	SSF53738	Phosphoglucomutase, first 3 domains
YPN_1171	SSF55957	Phosphoglucomutase, C-terminal domain
YPN_1174	SSF103481	Multidrug resistance efflux transporter EmrE
YPN_1175	SSF52172	CheY-like
YPN_1176	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPN_1176	SSF52402	Adenine nucleotide alpha hydrolases-like
YPN_1176	SSF55781	GAF domain-like
YPN_1176	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_1178	SSF56784	HAD-like
YPN_1178	SSF81653	Calcium ATPase, transduction domain A
YPN_1178	SSF81660	Metal cation-transporting ATPase, ATP-binding domain N
YPN_1178	SSF81665	Calcium ATPase, transmembrane domain M
YPN_1183	SSF48173	Cryptochrome/photolyase FAD-binding domain
YPN_1183	SSF52425	Cryptochrome/photolyase, N-terminal domain
YPN_1184	SSF56281	Metallo-hydrolase/oxidoreductase
YPN_1185	SSF102705	NIF3 (NGG1p interacting factor 3)-like
YPN_1186	SSF160467	PH0987 N-terminal domain-like
YPN_1186	SSF50891	Cyclophilin-like
YPN_1187	SSF50891	Cyclophilin-like
YPN_1188	SSF88713	Glycoside hydrolase/deacetylase
YPN_1191	SSF53182	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
YPN_1192	SSF52141	Uracil-DNA glycosylase-like
YPN_1193	SSF51998	PFL-like glycyl radical enzymes
YPN_1194	SSF53474	alpha/beta-Hydrolases
YPN_1195	SSF48403	Ankyrin repeat
YPN_1196	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1197	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_1198	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
YPN_1198	SSF51905	FAD/NAD(P)-binding domain
YPN_1198	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
YPN_1199	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
YPN_1199	SSF88946	Sigma2 domain of RNA polymerase sigma factors
YPN_1200	SSF89069	N-terminal, cytoplasmic domain of anti-sigmaE factor RseA
YPN_1204	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1204	SSF54980	EF-G C-terminal domain-like
YPN_1205	SSF51306	LexA/Signal peptidase
YPN_1206	SSF54768	dsRNA-binding domain-like
YPN_1206	SSF69065	RNase III domain-like
YPN_1207	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1207	SSF54814	Prokaryotic type KH domain (KH-domain type II)
YPN_1208	SSF50249	Nucleic acid-binding proteins
YPN_1208	SSF57863	ArfGap/RecO-like zinc finger
YPN_1209	SSF63892	Pyridoxine 5'-phosphate synthase
YPN_1210	SSF56214	4'-phosphopantetheinyl transferase
YPN_1211	SSF143422	Transposase IS200-like
YPN_1212	SSF54862	4Fe-4S ferredoxins
YPN_1213	SSF46689	Homeodomain-like
YPN_1213	SSF53697	SIS domain
YPN_1214	SSF46934	UBA-like
YPN_1214	SSF53697	SIS domain
YPN_1215	SSF56784	HAD-like
YPN_1216	SSF53927	Cytidine deaminase-like
YPN_1217	SSF53850	Periplasmic binding protein-like II
YPN_1217	SSF53955	Lysozyme-like
YPN_1218	SSF109736	FGAM synthase PurL, linker domain
YPN_1218	SSF52317	Class I glutamine amidotransferase-like
YPN_1218	SSF55326	PurM N-terminal domain-like
YPN_1218	SSF56042	PurM C-terminal domain-like
YPN_1218	SSF82697	PurS-like
YPN_1221	SSF143422	Transposase IS200-like
YPN_1222	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPN_1222	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_1224	SSF46689	Homeodomain-like
YPN_1224	SSF52172	CheY-like
YPN_1224	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1225	SSF52402	Adenine nucleotide alpha hydrolases-like
YPN_1225	SSF56317	Carbon-nitrogen hydrolase
YPN_1226	SSF54913	GlnB-like
YPN_1227	SSF53850	Periplasmic binding protein-like II
YPN_1228	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1229	SSF46689	Homeodomain-like
YPN_1229	SSF53098	Ribonuclease H-like
YPN_1230	SSF46785	"Winged helix" DNA-binding domain
YPN_1230	SSF53850	Periplasmic binding protein-like II
YPN_1231	SSF46458	Globin-like
YPN_1231	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
YPN_1231	SSF63380	Riboflavin synthase domain-like
YPN_1232	SSF53383	PLP-dependent transferases
YPN_1233	SSF56925	OMPA-like
YPN_1234	SSF103473	MFS general substrate transporter
YPN_1235	SSF63520	PTS-regulatory domain, PRD
YPN_1238	SSF56655	Carbohydrate phosphatase
YPN_1239	SSF75217	alpha/beta knot
YPN_1240	SSF46785	"Winged helix" DNA-binding domain
YPN_1241	SSF53383	PLP-dependent transferases
YPN_1242	SSF82649	SufE/NifU
YPN_1243	SSF89360	HesB-like domain
YPN_1244	SSF46565	Chaperone J-domain
YPN_1244	SSF47144	HSC20 (HSCB), C-terminal oligomerisation domain
YPN_1245	SSF100920	Heat shock protein 70kD (HSP70), peptide-binding domain
YPN_1245	SSF100934	Heat shock protein 70kD (HSP70), C-terminal subdomain
YPN_1245	SSF53067	Actin-like ATPase domain
YPN_1246	SSF54292	2Fe-2S ferredoxin-like
YPN_1247	SSF140319	IscX-like
YPN_1248	SSF53187	Zn-dependent exopeptidases
YPN_1250	SSF103515	Autotransporter
YPN_1251	SSF103515	Autotransporter
YPN_1251	SSF51126	Pectin lyase-like
YPN_1252	SSF103515	Autotransporter
YPN_1252	SSF51126	Pectin lyase-like
YPN_1254	SSF49695	gamma-Crystallin-like
YPN_1255	SSF54919	Nucleoside diphosphate kinase, NDK
YPN_1256	SSF102114	Radical SAM enzymes
YPN_1257	SSF48452	TPR-like
YPN_1258	SSF47413	lambda repressor-like DNA-binding domains
YPN_1259	SSF51604	Enolase C-terminal domain-like
YPN_1259	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
YPN_1260	SSF52954	Class II aaRS ABD-related
YPN_1260	SSF55681	Class II aaRS and biotin synthetases
YPN_1261	SSF48452	TPR-like
YPN_1262	SSF50998	Quinoprotein alcohol dehydrogenase-like
YPN_1263	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1265	SSF161187	YfgJ-like
YPN_1267	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
YPN_1267	SSF54631	CBS-domain pair
YPN_1268	SSF52317	Class I glutamine amidotransferase-like
YPN_1268	SSF52402	Adenine nucleotide alpha hydrolases-like
YPN_1268	SSF54810	GMP synthetase C-terminal dimerisation domain
YPN_1269	SSF143422	Transposase IS200-like
YPN_1270	SSF141452	Hcp1-like
YPN_1278	SSF53613	Ribokinase-like
YPN_1281	SSF89872	Inhibitor of vertebrate lysozyme, Ivy
YPN_1282	SSF111331	NAD kinase/diacylglycerol kinase-like
YPN_1284	SSF160113	YegP-like
YPN_1285	SSF52172	CheY-like
YPN_1286	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_1287	SSF158472	HAMP domain-like
YPN_1287	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPN_1287	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_1288	SSF103473	MFS general substrate transporter
YPN_1289	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
YPN_1289	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
YPN_1289	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
YPN_1290	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
YPN_1290	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
YPN_1290	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
YPN_1291	SSF111369	HlyD-like secretion proteins
YPN_1292	SSF50331	MOP-like
YPN_1292	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1293	SSF46785	"Winged helix" DNA-binding domain
YPN_1293	SSF53383	PLP-dependent transferases
YPN_1294	SSF53383	PLP-dependent transferases
YPN_1295	SSF53850	Periplasmic binding protein-like II
YPN_1296	SSF161098	MetI-like
YPN_1297	SSF161098	MetI-like
YPN_1298	SSF53067	Actin-like ATPase domain
YPN_1299	SSF158791	MgtE N-terminal domain-like
YPN_1299	SSF161093	MgtE membrane domain-like
YPN_1299	SSF54631	CBS-domain pair
YPN_1300	SSF109604	HD-domain/PDEase-like
YPN_1300	SSF53067	Actin-like ATPase domain
YPN_1301	SSF140356	PPK N-terminal domain-like
YPN_1301	SSF143724	PHP14-like
YPN_1301	SSF56024	Phospholipase D/nuclease
YPN_1302	SSF161098	MetI-like
YPN_1302	SSF82171	DPP6 N-terminal domain-like
YPN_1303	SSF161098	MetI-like
YPN_1304	SSF161098	MetI-like
YPN_1305	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1308	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPN_1309	SSF53328	Formyltransferase
YPN_1310	SSF55326	PurM N-terminal domain-like
YPN_1310	SSF56042	PurM C-terminal domain-like
YPN_1311	SSF53271	PRTase-like
YPN_1312	SSF143422	Transposase IS200-like
YPN_1313	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1314	SSF52833	Thioredoxin-like
YPN_1315	SSF48452	TPR-like
YPN_1321	SSF52833	Thioredoxin-like
YPN_1322	SSF55021	ACT-like
YPN_1323	SSF51569	Aldolase
YPN_1325	SSF143422	Transposase IS200-like
YPN_1326	SSF56104	SAICAR synthase-like
YPN_1329	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1329	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPN_1331	SSF55166	Hedgehog/DD-peptidase
YPN_1332	SSF53187	Zn-dependent exopeptidases
YPN_1332	SSF55031	Bacterial exopeptidase dimerisation domain
YPN_1333	SSF52833	Thioredoxin-like
YPN_1334	SSF48452	TPR-like
YPN_1335	SSF53850	Periplasmic binding protein-like II
YPN_1336	SSF161098	MetI-like
YPN_1337	SSF50331	MOP-like
YPN_1337	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1338	SSF53649	Alkaline phosphatase-like
YPN_1339	SSF102114	Radical SAM enzymes
YPN_1342	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
YPN_1342	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
YPN_1342	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
YPN_1344	SSF46894	C-terminal effector domain of the bipartite response regulators
YPN_1344	SSF52172	CheY-like
YPN_1345	SSF54862	4Fe-4S ferredoxins
YPN_1347	SSF50692	ADC-like
YPN_1347	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
YPN_1348	SSF48695	Multiheme cytochromes
YPN_1349	SSF48695	Multiheme cytochromes
YPN_1350	SSF55811	Nudix
YPN_1351	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_1351	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
YPN_1351	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
YPN_1353	SSF102886	Coproporphyrinogen III oxidase
YPN_1354	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPN_1357	SSF103515	Autotransporter
YPN_1357	SSF51126	Pectin lyase-like
YPN_1358	SSF101756	Hypothetical protein YgiW
YPN_1360	SSF54909	Dimeric alpha+beta barrel
YPN_1361	SSF51569	Aldolase
YPN_1362	SSF51366	Ribulose-phoshate binding barrel
YPN_1363	SSF52058	L domain-like
YPN_1364	SSF53067	Actin-like ATPase domain
YPN_1365	SSF51197	Clavaminate synthase-like
YPN_1366	SSF46689	Homeodomain-like
YPN_1366	SSF53697	SIS domain
YPN_1367	SSF103473	MFS general substrate transporter
YPN_1368	SSF53850	Periplasmic binding protein-like II
YPN_1369	SSF161098	MetI-like
YPN_1370	SSF161098	MetI-like
YPN_1371	SSF50331	MOP-like
YPN_1371	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1372	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
YPN_1373	SSF52058	L domain-like
YPN_1374	SSF46894	C-terminal effector domain of the bipartite response regulators
YPN_1374	SSF52172	CheY-like
YPN_1375	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPN_1375	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_1376	SSF53300	vWA-like
YPN_1377	SSF53383	PLP-dependent transferases
YPN_1378	SSF53092	Creatinase/prolidase N-terminal domain
YPN_1379	SSF53092	Creatinase/prolidase N-terminal domain
YPN_1379	SSF55920	Creatinase/aminopeptidase
YPN_1381	SSF51905	FAD/NAD(P)-binding domain
YPN_1381	SSF52821	Rhodanese/Cell cycle control phosphatase
YPN_1381	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
YPN_1382	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1383	SSF111369	HlyD-like secretion proteins
YPN_1384	SSF46894	C-terminal effector domain of the bipartite response regulators
YPN_1384	SSF52172	CheY-like
YPN_1385	SSF158472	HAMP domain-like
YPN_1385	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPN_1385	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_1386	SSF143422	Transposase IS200-like
YPN_1387	SSF51261	Duplicated hybrid motif
YPN_1388	SSF47831	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
YPN_1388	SSF51621	Phosphoenolpyruvate/pyruvate domain
YPN_1388	SSF52009	Phosphohistidine domain
YPN_1389	SSF55594	HPr-like
YPN_1390	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
YPN_1392	SSF64383	Cell-division protein ZipA, C-terminal domain
YPN_1393	SSF47781	RuvA domain 2-like
YPN_1393	SSF50249	Nucleic acid-binding proteins
YPN_1393	SSF52113	BRCT domain
YPN_1393	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
YPN_1397	SSF143422	Transposase IS200-like
YPN_1398	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
YPN_1398	SSF52374	Nucleotidylyl transferase
YPN_1402	SSF51430	NAD(P)-linked oxidoreductase
YPN_1403	SSF46785	"Winged helix" DNA-binding domain
YPN_1403	SSF53850	Periplasmic binding protein-like II
YPN_1405	SSF53067	Actin-like ATPase domain
YPN_1406	SSF51197	Clavaminate synthase-like
YPN_1407	SSF53383	PLP-dependent transferases
YPN_1408	SSF81342	Transmembrane di-heme cytochromes
YPN_1410	SSF52964	TolB, N-terminal domain
YPN_1413	SSF54862	4Fe-4S ferredoxins
YPN_1414	SSF89155	TorD-like
YPN_1416	SSF54862	4Fe-4S ferredoxins
YPN_1417	SSF50692	ADC-like
YPN_1417	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
YPN_1419	SSF141452	Hcp1-like
YPN_1421	SSF50331	MOP-like
YPN_1421	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1422	SSF161098	MetI-like
YPN_1423	SSF53850	Periplasmic binding protein-like II
YPN_1424	SSF53955	Lysozyme-like
YPN_1425	SSF46894	C-terminal effector domain of the bipartite response regulators
YPN_1426	SSF55724	Mog1p/PsbP-like
YPN_1427	SSF103088	OmpA-like
YPN_1429	SSF53448	Nucleotide-diphospho-sugar transferases
YPN_1430	SSF49401	Bacterial adhesins
YPN_1434	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1434	SSF81923	Double Clp-N motif
YPN_1435	SSF49401	Bacterial adhesins
YPN_1436	SSF49354	PapD-like
YPN_1436	SSF49584	Periplasmic chaperone C-domain
YPN_1437	SSF141729	FimD N-terminal domain-like
YPN_1441	SSF49401	Bacterial adhesins
YPN_1444	SSF141452	Hcp1-like
YPN_1448	SSF46689	Homeodomain-like
YPN_1448	SSF53098	Ribonuclease H-like
YPN_1449	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1450	SSF56935	Porins
YPN_1451	SSF53187	Zn-dependent exopeptidases
YPN_1452	SSF51338	Composite domain of metallo-dependent hydrolases
YPN_1452	SSF51556	Metallo-dependent hydrolases
YPN_1453	SSF46785	"Winged helix" DNA-binding domain
YPN_1453	SSF64288	Chorismate lyase-like
YPN_1454	SSF51338	Composite domain of metallo-dependent hydrolases
YPN_1454	SSF51556	Metallo-dependent hydrolases
YPN_1455	SSF51182	RmlC-like cupins
YPN_1456	SSF56322	ADC synthase
YPN_1457	SSF53901	Thiolase-like
YPN_1458	SSF53901	Thiolase-like
YPN_1459	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_1460	SSF56281	Metallo-hydrolase/oxidoreductase
YPN_1462	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_1463	SSF53448	Nucleotide-diphospho-sugar transferases
YPN_1465	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPN_1469	SSF81901	HCP-like
YPN_1469	SSF82185	Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
YPN_1470	SSF81901	HCP-like
YPN_1471	SSF89623	Ribose/Galactose isomerase RpiB/AlsB
YPN_1472	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_1473	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_1474	SSF51182	RmlC-like cupins
YPN_1475	SSF51182	RmlC-like cupins
YPN_1476	SSF48371	ARM repeat
YPN_1477	SSF53474	alpha/beta-Hydrolases
YPN_1478	SSF51182	RmlC-like cupins
YPN_1479	SSF69118	AhpD-like
YPN_1480	SSF158472	HAMP domain-like
YPN_1480	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPN_1480	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_1481	SSF46894	C-terminal effector domain of the bipartite response regulators
YPN_1481	SSF52172	CheY-like
YPN_1482	SSF53474	alpha/beta-Hydrolases
YPN_1483	SSF52218	Flavoproteins
YPN_1484	SSF81342	Transmembrane di-heme cytochromes
YPN_1486	SSF53822	Periplasmic binding protein-like I
YPN_1487	SSF53474	alpha/beta-Hydrolases
YPN_1488	SSF52821	Rhodanese/Cell cycle control phosphatase
YPN_1489	SSF53098	Ribonuclease H-like
YPN_1490	SSF46689	Homeodomain-like
YPN_1491	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1491	SSF81271	TGS-like
YPN_1492	SSF53178	Peptidyl-tRNA hydrolase-like
YPN_1494	SSF53271	PRTase-like
YPN_1496	SSF54211	Ribosomal protein S5 domain 2-like
YPN_1496	SSF55060	GHMP Kinase, C-terminal domain
YPN_1497	SSF89392	Prokaryotic lipoproteins and lipoprotein localization factors
YPN_1498	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_1498	SSF69075	Glutamyl tRNA-reductase dimerization domain
YPN_1498	SSF69742	Glutamyl tRNA-reductase catalytic, N-terminal domain
YPN_1499	SSF75620	Release factor
YPN_1500	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_1502	SSF48452	TPR-like
YPN_1503	SSF51569	Aldolase
YPN_1504	SSF52091	SpoIIaa-like
YPN_1505	SSF51695	PLC-like phosphodiesterases
YPN_1506	SSF53850	Periplasmic binding protein-like II
YPN_1507	SSF161098	MetI-like
YPN_1508	SSF161098	MetI-like
YPN_1509	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1510	SSF143422	Transposase IS200-like
YPN_1511	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1512	SSF51695	PLC-like phosphodiesterases
YPN_1513	SSF46785	"Winged helix" DNA-binding domain
YPN_1513	SSF53067	Actin-like ATPase domain
YPN_1514	SSF89550	PHP domain-like
YPN_1515	SSF89155	TorD-like
YPN_1517	SSF103473	MFS general substrate transporter
YPN_1518	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPN_1519	SSF46785	"Winged helix" DNA-binding domain
YPN_1519	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_1519	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPN_1522	SSF51126	Pectin lyase-like
YPN_1523	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
YPN_1523	SSF52374	Nucleotidylyl transferase
YPN_1523	SSF55190	Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
YPN_1524	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
YPN_1525	SSF110395	CutC-like
YPN_1526	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_1527	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_1528	SSF161084	MAPEG domain-like
YPN_1529	SSF117396	TM1631-like
YPN_1530	SSF50249	Nucleic acid-binding proteins
YPN_1530	SSF55261	GAD domain-like
YPN_1530	SSF55681	Class II aaRS and biotin synthetases
YPN_1531	SSF55811	Nudix
YPN_1532	SSF75625	YebC-like
YPN_1533	SSF53098	Ribonuclease H-like
YPN_1534	SSF46929	DNA helicase RuvA subunit, C-terminal domain
YPN_1534	SSF47781	RuvA domain 2-like
YPN_1534	SSF50249	Nucleic acid-binding proteins
YPN_1535	SSF46785	"Winged helix" DNA-binding domain
YPN_1535	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1536	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
YPN_1537	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1538	SSF53807	"Helical backbone" metal receptor
YPN_1539	SSF51261	Duplicated hybrid motif
YPN_1541	SSF50800	PK beta-barrel domain-like
YPN_1541	SSF51621	Phosphoenolpyruvate/pyruvate domain
YPN_1541	SSF52935	PK C-terminal domain-like
YPN_1542	SSF46689	Homeodomain-like
YPN_1542	SSF53697	SIS domain
YPN_1543	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_1543	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPN_1544	SSF51569	Aldolase
YPN_1545	SSF103481	Multidrug resistance efflux transporter EmrE
YPN_1546	SSF103481	Multidrug resistance efflux transporter EmrE
YPN_1547	SSF55298	YjgF-like
YPN_1548	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1549	SSF53067	Actin-like ATPase domain
YPN_1551	SSF56801	Acetyl-CoA synthetase-like
YPN_1552	SSF47819	HRDC-like
YPN_1552	SSF53098	Ribonuclease H-like
YPN_1553	SSF55229	Cell division protein MinE topological specificity domain
YPN_1554	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1555	SSF63848	Cell-division inhibitor MinC, C-terminal domain
YPN_1556	SSF160191	YcgL-like
YPN_1557	SSF53955	Lysozyme-like
YPN_1558	SSF56529	FAH
YPN_1560	SSF56349	DNA breaking-rejoining enzymes
YPN_1561	SSF46689	Homeodomain-like
YPN_1561	SSF53098	Ribonuclease H-like
YPN_1562	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1563	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_1564	SSF103370	NinB
YPN_1570	SSF53955	Lysozyme-like
YPN_1582	SSF49373	Invasin/intimin cell-adhesion fragments
YPN_1588	SSF49373	Invasin/intimin cell-adhesion fragments
YPN_1592	SSF143422	Transposase IS200-like
YPN_1594	SSF102712	JAB1/MPN domain
YPN_1594	SSF54001	Cysteine proteinases
YPN_1596	SSF47598	Ribbon-helix-helix
YPN_1600	SSF49265	Fibronectin type III
YPN_1606	SSF103473	MFS general substrate transporter
YPN_1607	SSF53383	PLP-dependent transferases
YPN_1610	SSF158442	DsbB-like
YPN_1612	SSF46785	"Winged helix" DNA-binding domain
YPN_1612	SSF48008	GntR ligand-binding domain-like
YPN_1614	SSF51905	FAD/NAD(P)-binding domain
YPN_1614	SSF54373	FAD-linked reductases, C-terminal domain
YPN_1615	SSF103473	MFS general substrate transporter
YPN_1616	SSF51182	RmlC-like cupins
YPN_1617	SSF46785	"Winged helix" DNA-binding domain
YPN_1617	SSF53850	Periplasmic binding protein-like II
YPN_1618	SSF103481	Multidrug resistance efflux transporter EmrE
YPN_1620	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1622	SSF74650	Galactose mutarotase-like
YPN_1623	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_1623	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPN_1624	SSF51316	Mss4-like
YPN_1626	SSF52499	Isochorismatase-like hydrolases
YPN_1627	SSF53774	Glutaminase/Asparaginase
YPN_1628	SSF52096	ClpP/crotonase
YPN_1629	SSF55469	FMN-dependent nitroreductase-like
YPN_1630	SSF55326	PurM N-terminal domain-like
YPN_1630	SSF56042	PurM C-terminal domain-like
YPN_1631	SSF56712	Prokaryotic type I DNA topoisomerase
YPN_1633	SSF55811	Nudix
YPN_1634	SSF56219	DNase I-like
YPN_1635	SSF46785	"Winged helix" DNA-binding domain
YPN_1638	SSF53328	Formyltransferase
YPN_1638	SSF55021	ACT-like
YPN_1639	SSF103642	Sec-C motif
YPN_1639	SSF54427	NTF2-like
YPN_1640	SSF52172	CheY-like
YPN_1641	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPN_1641	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_1641	SSF52413	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
YPN_1642	SSF81273	H-NS histone-like proteins
YPN_1643	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1643	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
YPN_1644	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1645	SSF46689	Homeodomain-like
YPN_1645	SSF53098	Ribonuclease H-like
YPN_1646	SSF53720	ALDH-like
YPN_1646	SSF56796	Dehydroquinate synthase-like
YPN_1648	SSF53850	Periplasmic binding protein-like II
YPN_1649	SSF161098	MetI-like
YPN_1650	SSF161098	MetI-like
YPN_1651	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1652	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1654	SSF102816	Putative dsDNA mimic
YPN_1655	SSF56024	Phospholipase D/nuclease
YPN_1656	SSF56925	OMPA-like
YPN_1660	SSF54909	Dimeric alpha+beta barrel
YPN_1661	SSF74653	TolA/TonB C-terminal domain
YPN_1663	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
YPN_1666	SSF52091	SpoIIaa-like
YPN_1669	SSF56925	OMPA-like
YPN_1672	SSF51366	Ribulose-phoshate binding barrel
YPN_1673	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
YPN_1674	SSF51366	Ribulose-phoshate binding barrel
YPN_1675	SSF47648	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
YPN_1675	SSF52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
YPN_1676	SSF52317	Class I glutamine amidotransferase-like
YPN_1677	SSF56322	ADC synthase
YPN_1678	SSF89550	PHP domain-like
YPN_1679	SSF55821	YrdC/RibB
YPN_1680	SSF55120	Pseudouridine synthase
YPN_1680	SSF55174	Alpha-L RNA-binding motif
YPN_1681	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1682	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_1683	SSF52096	ClpP/crotonase
YPN_1686	SSF56712	Prokaryotic type I DNA topoisomerase
YPN_1686	SSF57783	Zinc beta-ribbon
YPN_1687	SSF46785	"Winged helix" DNA-binding domain
YPN_1687	SSF53850	Periplasmic binding protein-like II
YPN_1689	SSF52016	LeuD/IlvD-like
YPN_1689	SSF53732	Aconitase iron-sulfur domain
YPN_1690	SSF142695	RibA-like
YPN_1692	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
YPN_1694	SSF48452	TPR-like
YPN_1695	SSF47598	Ribbon-helix-helix
YPN_1696	SSF51366	Ribulose-phoshate binding barrel
YPN_1697	SSF55159	eIF1-like
YPN_1699	SSF53639	AraD/HMP-PK domain-like
YPN_1701	SSF51569	Aldolase
YPN_1704	SSF50249	Nucleic acid-binding proteins
YPN_1705	SSF103473	MFS general substrate transporter
YPN_1706	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_1707	SSF48150	DNA-glycosylase
YPN_1711	SSF46689	Homeodomain-like
YPN_1711	SSF55136	Probable bacterial effector-binding domain
YPN_1712	SSF142019	Nqo1 FMN-binding domain-like
YPN_1712	SSF46548	alpha-helical ferredoxin
YPN_1713	SSF54862	4Fe-4S ferredoxins
YPN_1717	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1717	SSF90123	ABC transporter transmembrane region
YPN_1718	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1719	SSF111369	HlyD-like secretion proteins
YPN_1721	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1721	SSF90123	ABC transporter transmembrane region
YPN_1722	SSF50443	FucI/AraA C-terminal domain-like
YPN_1722	SSF53743	FucI/AraA N-terminal and middle domains
YPN_1723	SSF53067	Actin-like ATPase domain
YPN_1724	SSF53822	Periplasmic binding protein-like I
YPN_1725	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1727	SSF46689	Homeodomain-like
YPN_1727	SSF51215	Regulatory protein AraC
YPN_1728	SSF46689	Homeodomain-like
YPN_1729	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_1735	SSF51182	RmlC-like cupins
YPN_1736	SSF48557	L-aspartase-like
YPN_1737	SSF56596	Replication terminator protein (Tus)
YPN_1738	SSF103473	MFS general substrate transporter
YPN_1739	SSF46785	"Winged helix" DNA-binding domain
YPN_1739	SSF53850	Periplasmic binding protein-like II
YPN_1740	SSF46785	"Winged helix" DNA-binding domain
YPN_1740	SSF53067	Actin-like ATPase domain
YPN_1741	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1742	SSF81340	Clc chloride channel
YPN_1743	SSF47413	lambda repressor-like DNA-binding domains
YPN_1743	SSF53822	Periplasmic binding protein-like I
YPN_1745	SSF53822	Periplasmic binding protein-like I
YPN_1746	SSF53850	Periplasmic binding protein-like II
YPN_1747	SSF161098	MetI-like
YPN_1748	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1749	SSF53167	Purine and uridine phosphorylases
YPN_1754	SSF54001	Cysteine proteinases
YPN_1755	SSF52467	DHS-like NAD/FAD-binding domain
YPN_1755	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
YPN_1756	SSF55021	ACT-like
YPN_1757	SSF56784	HAD-like
YPN_1758	SSF158682	TerB-like
YPN_1759	SSF53649	Alkaline phosphatase-like
YPN_1760	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
YPN_1760	SSF53155	Methylated DNA-protein cysteine methyltransferase domain
YPN_1761	SSF46785	"Winged helix" DNA-binding domain
YPN_1761	SSF51206	cAMP-binding domain-like
YPN_1762	SSF52402	Adenine nucleotide alpha hydrolases-like
YPN_1763	SSF52467	DHS-like NAD/FAD-binding domain
YPN_1764	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_1764	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
YPN_1765	SSF159871	YdgH-like
YPN_1768	SSF46894	C-terminal effector domain of the bipartite response regulators
YPN_1768	SSF52172	CheY-like
YPN_1769	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPN_1769	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_1770	SSF55486	Metalloproteases ("zincins"), catalytic domain
YPN_1772	SSF55486	Metalloproteases ("zincins"), catalytic domain
YPN_1773	SSF143422	Transposase IS200-like
YPN_1774	SSF81298	Adenylylcyclase toxin (the edema factor)
YPN_1775	SSF81298	Adenylylcyclase toxin (the edema factor)
YPN_1777	SSF81342	Transmembrane di-heme cytochromes
YPN_1779	SSF50494	Trypsin-like serine proteases
YPN_1780	SSF47413	lambda repressor-like DNA-binding domains
YPN_1781	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1782	SSF52218	Flavoproteins
YPN_1783	SSF100950	NagB/RpiA/CoA transferase-like
YPN_1784	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPN_1784	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_1788	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_1788	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
YPN_1792	SSF103481	Multidrug resistance efflux transporter EmrE
YPN_1793	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
YPN_1793	SSF52922	TK C-terminal domain-like
YPN_1793	SSF53323	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
YPN_1793	SSF54862	4Fe-4S ferredoxins
YPN_1794	SSF52402	Adenine nucleotide alpha hydrolases-like
YPN_1795	SSF53474	alpha/beta-Hydrolases
YPN_1796	SSF46955	Putative DNA-binding domain
YPN_1798	SSF143865	CorA soluble domain-like
YPN_1798	SSF144083	Magnesium transport protein CorA, transmembrane region
YPN_1799	SSF53850	Periplasmic binding protein-like II
YPN_1800	SSF53187	Zn-dependent exopeptidases
YPN_1801	SSF51604	Enolase C-terminal domain-like
YPN_1801	SSF54826	Enolase N-terminal domain-like
YPN_1802	SSF52833	Thioredoxin-like
YPN_1803	SSF143422	Transposase IS200-like
YPN_1804	SSF46689	Homeodomain-like
YPN_1804	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1804	SSF55785	PYP-like sensor domain (PAS domain)
YPN_1813	SSF46689	Homeodomain-like
YPN_1813	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1814	SSF143422	Transposase IS200-like
YPN_1815	SSF53850	Periplasmic binding protein-like II
YPN_1816	SSF161098	MetI-like
YPN_1817	SSF161098	MetI-like
YPN_1818	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1819	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1820	SSF69118	AhpD-like
YPN_1821	SSF103473	MFS general substrate transporter
YPN_1824	SSF47616	GST C-terminal domain-like
YPN_1824	SSF52833	Thioredoxin-like
YPN_1825	SSF53613	Ribokinase-like
YPN_1826	SSF52374	Nucleotidylyl transferase
YPN_1826	SSF55174	Alpha-L RNA-binding motif
YPN_1827	SSF50475	FMN-binding split barrel
YPN_1828	SSF141488	YdhA-like
YPN_1829	SSF53067	Actin-like ATPase domain
YPN_1831	SSF46785	"Winged helix" DNA-binding domain
YPN_1832	SSF53649	Alkaline phosphatase-like
YPN_1833	SSF46689	Homeodomain-like
YPN_1833	SSF48498	Tetracyclin repressor-like, C-terminal domain
YPN_1834	SSF51395	FMN-linked oxidoreductases
YPN_1836	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
YPN_1837	SSF53098	Ribonuclease H-like
YPN_1838	SSF52833	Thioredoxin-like
YPN_1839	SSF54001	Cysteine proteinases
YPN_1840	SSF46609	Fe,Mn superoxide dismutase (SOD), N-terminal domain
YPN_1840	SSF54719	Fe,Mn superoxide dismutase (SOD), C-terminal domain
YPN_1841	SSF47413	lambda repressor-like DNA-binding domains
YPN_1841	SSF53822	Periplasmic binding protein-like I
YPN_1842	SSF46785	"Winged helix" DNA-binding domain
YPN_1842	SSF53850	Periplasmic binding protein-like II
YPN_1843	SSF103473	MFS general substrate transporter
YPN_1844	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_1845	SSF63380	Riboflavin synthase domain-like
YPN_1847	SSF50800	PK beta-barrel domain-like
YPN_1847	SSF51621	Phosphoenolpyruvate/pyruvate domain
YPN_1847	SSF52935	PK C-terminal domain-like
YPN_1848	SSF58042	Outer membrane lipoprotein
YPN_1849	SSF143422	Transposase IS200-like
YPN_1850	SSF46689	Homeodomain-like
YPN_1850	SSF53098	Ribonuclease H-like
YPN_1851	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1853	SSF141523	L,D-transpeptidase catalytic domain-like
YPN_1854	SSF82649	SufE/NifU
YPN_1855	SSF53383	PLP-dependent transferases
YPN_1856	SSF101960	Stabilizer of iron transporter SufD
YPN_1857	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1858	SSF101960	Stabilizer of iron transporter SufD
YPN_1859	SSF89360	HesB-like domain
YPN_1860	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
YPN_1861	SSF46548	alpha-helical ferredoxin
YPN_1861	SSF55103	FAD-linked oxidases, C-terminal domain
YPN_1861	SSF56176	FAD-binding/transporter-associated domain-like
YPN_1863	SSF51621	Phosphoenolpyruvate/pyruvate domain
YPN_1863	SSF52009	Phosphohistidine domain
YPN_1863	SSF56059	Glutathione synthetase ATP-binding domain-like
YPN_1864	SSF47454	A DNA-binding domain in eukaryotic transcription factors
YPN_1865	SSF51569	Aldolase
YPN_1868	SSF55681	Class II aaRS and biotin synthetases
YPN_1868	SSF82649	SufE/NifU
YPN_1869	SSF54001	Cysteine proteinases
YPN_1870	SSF103481	Multidrug resistance efflux transporter EmrE
YPN_1871	SSF103481	Multidrug resistance efflux transporter EmrE
YPN_1873	SSF88713	Glycoside hydrolase/deacetylase
YPN_1874	SSF50486	FMT C-terminal domain-like
YPN_1874	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_1874	SSF53328	Formyltransferase
YPN_1875	SSF53448	Nucleotide-diphospho-sugar transferases
YPN_1876	SSF53383	PLP-dependent transferases
YPN_1877	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1878	SSF52833	Thioredoxin-like
YPN_1879	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
YPN_1881	SSF47729	IHF-like DNA-binding proteins
YPN_1882	SSF46955	Putative DNA-binding domain
YPN_1882	SSF50249	Nucleic acid-binding proteins
YPN_1882	SSF54991	Anticodon-binding domain of PheRS
YPN_1882	SSF55681	Class II aaRS and biotin synthetases
YPN_1882	SSF56037	PheT/TilS domain
YPN_1883	SSF46589	tRNA-binding arm
YPN_1883	SSF55681	Class II aaRS and biotin synthetases
YPN_1885	SSF74731	Ribosomal protein L20
YPN_1886	SSF143034	L35p-like
YPN_1887	SSF55200	Translation initiation factor IF3, C-terminal domain
YPN_1888	SSF52954	Class II aaRS ABD-related
YPN_1888	SSF55186	ThrRS/AlaRS common domain
YPN_1888	SSF55681	Class II aaRS and biotin synthetases
YPN_1888	SSF81271	TGS-like
YPN_1892	SSF53955	Lysozyme-like
YPN_1893	SSF53807	"Helical backbone" metal receptor
YPN_1894	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1895	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
YPN_1896	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
YPN_1898	SSF56112	Protein kinase-like (PK-like)
YPN_1900	SSF56784	HAD-like
YPN_1904	SSF51182	RmlC-like cupins
YPN_1905	SSF51182	RmlC-like cupins
YPN_1906	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_1908	SSF160964	MalF N-terminal region-like
YPN_1908	SSF161098	MetI-like
YPN_1909	SSF161098	MetI-like
YPN_1910	SSF50331	MOP-like
YPN_1910	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1911	SSF53850	Periplasmic binding protein-like II
YPN_1912	SSF56935	Porins
YPN_1914	SSF118215	Proton glutamate symport protein
YPN_1915	SSF47090	PGBD-like
YPN_1915	SSF55846	N-acetylmuramoyl-L-alanine amidase-like
YPN_1916	SSF46785	"Winged helix" DNA-binding domain
YPN_1916	SSF55781	GAF domain-like
YPN_1917	SSF82171	DPP6 N-terminal domain-like
YPN_1918	SSF103473	MFS general substrate transporter
YPN_1919	SSF49354	PapD-like
YPN_1919	SSF49584	Periplasmic chaperone C-domain
YPN_1920	SSF49401	Bacterial adhesins
YPN_1921	SSF141729	FimD N-terminal domain-like
YPN_1922	SSF49354	PapD-like
YPN_1922	SSF49584	Periplasmic chaperone C-domain
YPN_1923	SSF49401	Bacterial adhesins
YPN_1925	SSF50156	PDZ domain-like
YPN_1925	SSF52096	ClpP/crotonase
YPN_1926	SSF48657	FinO-like
YPN_1927	SSF55781	GAF domain-like
YPN_1933	SSF49354	PapD-like
YPN_1937	SSF88697	PUA domain-like
YPN_1939	SSF46689	Homeodomain-like
YPN_1939	SSF53098	Ribonuclease H-like
YPN_1940	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_1942	SSF52151	FabD/lysophospholipase-like
YPN_1944	SSF50621	Alanine racemase C-terminal domain-like
YPN_1944	SSF51419	PLP-binding barrel
YPN_1946	SSF101967	Adhesin YadA, collagen-binding domain
YPN_1946	SSF54523	Pili subunits
YPN_1947	SSF101967	Adhesin YadA, collagen-binding domain
YPN_1948	SSF47090	PGBD-like
YPN_1948	SSF55846	N-acetylmuramoyl-L-alanine amidase-like
YPN_1950	SSF75708	Chemotaxis phosphatase CheZ
YPN_1951	SSF52172	CheY-like
YPN_1952	SSF52172	CheY-like
YPN_1952	SSF52738	Methylesterase CheB, C-terminal domain
YPN_1953	SSF47757	Chemotaxis receptor methyltransferase CheR, N-terminal domain
YPN_1953	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_1954	SSF47170	Aspartate receptor, ligand-binding domain
YPN_1954	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
YPN_1955	SSF47170	Aspartate receptor, ligand-binding domain
YPN_1955	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
YPN_1958	SSF103515	Autotransporter
YPN_1958	SSF51126	Pectin lyase-like
YPN_1960	SSF51658	Xylose isomerase-like
YPN_1961	SSF55298	YjgF-like
YPN_1962	SSF103473	MFS general substrate transporter
YPN_1963	SSF50341	CheW-like
YPN_1964	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
YPN_1964	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPN_1964	SSF50341	CheW-like
YPN_1964	SSF55052	CheY-binding domain of CheA
YPN_1964	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_1965	SSF103088	OmpA-like
YPN_1967	SSF160930	FlhC-like
YPN_1968	SSF63592	Flagellar transcriptional activator FlhD
YPN_1969	SSF56784	HAD-like
YPN_1969	SSF81653	Calcium ATPase, transduction domain A
YPN_1969	SSF81660	Metal cation-transporting ATPase, ATP-binding domain N
YPN_1969	SSF81665	Calcium ATPase, transmembrane domain M
YPN_1971	SSF47170	Aspartate receptor, ligand-binding domain
YPN_1971	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
YPN_1972	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
YPN_1974	SSF50249	Nucleic acid-binding proteins
YPN_1975	SSF49303	beta-Galactosidase/glucuronidase domain
YPN_1975	SSF49785	Galactose-binding domain-like
YPN_1975	SSF51445	(Trans)glycosidases
YPN_1975	SSF74650	Galactose mutarotase-like
YPN_1976	SSF50129	GroES-like
YPN_1976	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_1979	SSF46785	"Winged helix" DNA-binding domain
YPN_1979	SSF54909	Dimeric alpha+beta barrel
YPN_1982	SSF53254	Phosphoglycerate mutase-like
YPN_1985	SSF46785	"Winged helix" DNA-binding domain
YPN_1986	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_1987	SSF55785	PYP-like sensor domain (PAS domain)
YPN_1987	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
YPN_1989	SSF47413	lambda repressor-like DNA-binding domains
YPN_1989	SSF53822	Periplasmic binding protein-like I
YPN_1990	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
YPN_1991	SSF55120	Pseudouridine synthase
YPN_1992	SSF55811	Nudix
YPN_1993	SSF52402	Adenine nucleotide alpha hydrolases-like
YPN_1994	SSF101322	YcfC-like
YPN_1995	SSF48557	L-aspartase-like
YPN_1996	SSF56925	OMPA-like
YPN_1997	SSF52172	CheY-like
YPN_1998	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPN_1998	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_1999	SSF51197	Clavaminate synthase-like
YPN_2000	SSF53187	Zn-dependent exopeptidases
YPN_2000	SSF55031	Bacterial exopeptidase dimerisation domain
YPN_2001	SSF52467	DHS-like NAD/FAD-binding domain
YPN_2002	SSF53067	Actin-like ATPase domain
YPN_2003	SSF53067	Actin-like ATPase domain
YPN_2005	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2007	SSF141259	CarD-like
YPN_2007	SSF143517	TRCF domain-like
YPN_2007	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2012	SSF51905	FAD/NAD(P)-binding domain
YPN_2013	SSF53474	alpha/beta-Hydrolases
YPN_2014	SSF51445	(Trans)glycosidases
YPN_2015	SSF56112	Protein kinase-like (PK-like)
YPN_2018	SSF54197	HIT-like
YPN_2019	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2019	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
YPN_2020	SSF143422	Transposase IS200-like
YPN_2021	SSF55604	Glucose permease domain IIB
YPN_2022	SSF51556	Metallo-dependent hydrolases
YPN_2023	SSF48019	post-AAA+ oligomerization domain-like
YPN_2023	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2024	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2026	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
YPN_2027	SSF143422	Transposase IS200-like
YPN_2028	SSF53901	Thiolase-like
YPN_2029	SSF47336	ACP-like
YPN_2030	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2031	SSF52151	FabD/lysophospholipase-like
YPN_2031	SSF55048	Probable ACP-binding domain of malonyl-CoA ACP transacylase
YPN_2032	SSF53901	Thiolase-like
YPN_2033	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
YPN_2034	SSF57829	Zn-binding ribosomal proteins
YPN_2036	SSF52972	ITPase-like
YPN_2037	SSF55120	Pseudouridine synthase
YPN_2037	SSF55174	Alpha-L RNA-binding motif
YPN_2038	SSF50249	Nucleic acid-binding proteins
YPN_2041	SSF54857	DNA damage-inducible protein DinI
YPN_2042	SSF51556	Metallo-dependent hydrolases
YPN_2043	SSF54909	Dimeric alpha+beta barrel
YPN_2045	SSF51905	FAD/NAD(P)-binding domain
YPN_2045	SSF54373	FAD-linked reductases, C-terminal domain
YPN_2046	SSF46894	C-terminal effector domain of the bipartite response regulators
YPN_2048	SSF52821	Rhodanese/Cell cycle control phosphatase
YPN_2051	SSF103481	Multidrug resistance efflux transporter EmrE
YPN_2052	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPN_2053	SSF46894	C-terminal effector domain of the bipartite response regulators
YPN_2053	SSF75516	Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
YPN_2054	SSF46785	"Winged helix" DNA-binding domain
YPN_2054	SSF53850	Periplasmic binding protein-like II
YPN_2055	SSF103473	MFS general substrate transporter
YPN_2056	SSF54211	Ribosomal protein S5 domain 2-like
YPN_2057	SSF51430	NAD(P)-linked oxidoreductase
YPN_2062	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2064	SSF50182	Sm-like ribonucleoproteins
YPN_2066	SSF56925	OMPA-like
YPN_2067	SSF75005	Arabinanase/levansucrase/invertase
YPN_2068	SSF75005	Arabinanase/levansucrase/invertase
YPN_2069	SSF161098	MetI-like
YPN_2070	SSF161098	MetI-like
YPN_2071	SSF53850	Periplasmic binding protein-like II
YPN_2072	SSF47413	lambda repressor-like DNA-binding domains
YPN_2072	SSF53822	Periplasmic binding protein-like I
YPN_2073	SSF53738	Phosphoglucomutase, first 3 domains
YPN_2073	SSF55957	Phosphoglucomutase, C-terminal domain
YPN_2074	SSF50331	MOP-like
YPN_2074	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2084	SSF51126	Pectin lyase-like
YPN_2086	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
YPN_2086	SSF54292	2Fe-2S ferredoxin-like
YPN_2086	SSF63380	Riboflavin synthase domain-like
YPN_2087	SSF55961	Bet v1-like
YPN_2088	SSF50022	ISP domain
YPN_2088	SSF55961	Bet v1-like
YPN_2090	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
YPN_2091	SSF46785	"Winged helix" DNA-binding domain
YPN_2091	SSF53850	Periplasmic binding protein-like II
YPN_2092	SSF47413	lambda repressor-like DNA-binding domains
YPN_2092	SSF53822	Periplasmic binding protein-like I
YPN_2094	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2095	SSF53822	Periplasmic binding protein-like I
YPN_2096	SSF50129	GroES-like
YPN_2096	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2099	SSF161111	Cation efflux protein transmembrane domain-like
YPN_2100	SSF56925	OMPA-like
YPN_2102	SSF103481	Multidrug resistance efflux transporter EmrE
YPN_2103	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPN_2104	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_2105	SSF47240	Ferritin-like
YPN_2106	SSF48452	TPR-like
YPN_2107	SSF53850	Periplasmic binding protein-like II
YPN_2108	SSF161098	MetI-like
YPN_2109	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2110	SSF55785	PYP-like sensor domain (PAS domain)
YPN_2110	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
YPN_2111	SSF46689	Homeodomain-like
YPN_2111	SSF53098	Ribonuclease H-like
YPN_2112	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2114	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_2115	SSF159871	YdgH-like
YPN_2117	SSF47648	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
YPN_2117	SSF52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
YPN_2118	SSF56801	Acetyl-CoA synthetase-like
YPN_2119	SSF51604	Enolase C-terminal domain-like
YPN_2119	SSF54826	Enolase N-terminal domain-like
YPN_2120	SSF52096	ClpP/crotonase
YPN_2121	SSF53474	alpha/beta-Hydrolases
YPN_2122	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
YPN_2123	SSF56322	ADC synthase
YPN_2128	SSF143975	IlvD/EDD N-terminal domain-like
YPN_2128	SSF52016	LeuD/IlvD-like
YPN_2129	SSF143744	GlcG-like
YPN_2130	SSF103473	MFS general substrate transporter
YPN_2131	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2131	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
YPN_2132	SSF47413	lambda repressor-like DNA-binding domains
YPN_2132	SSF53822	Periplasmic binding protein-like I
YPN_2133	SSF51445	(Trans)glycosidases
YPN_2134	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2135	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2136	SSF51197	Clavaminate synthase-like
YPN_2143	SSF54862	4Fe-4S ferredoxins
YPN_2145	SSF50692	ADC-like
YPN_2145	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
YPN_2145	SSF54292	2Fe-2S ferredoxin-like
YPN_2145	SSF54862	4Fe-4S ferredoxins
YPN_2146	SSF140490	Nqo1C-terminal domain-like
YPN_2146	SSF142019	Nqo1 FMN-binding domain-like
YPN_2146	SSF142984	Nqo1 middle domain-like
YPN_2147	SSF52833	Thioredoxin-like
YPN_2148	SSF143243	Nqo5-like
YPN_2148	SSF56762	HydB/Nqo4-like
YPN_2149	SSF56770	HydA/Nqo6-like
YPN_2151	SSF46785	"Winged helix" DNA-binding domain
YPN_2151	SSF53850	Periplasmic binding protein-like II
YPN_2152	SSF53383	PLP-dependent transferases
YPN_2153	SSF109604	HD-domain/PDEase-like
YPN_2154	SSF116726	TrkA C-terminal domain-like
YPN_2155	SSF56784	HAD-like
YPN_2156	SSF116960	YfbU-like
YPN_2158	SSF53067	Actin-like ATPase domain
YPN_2159	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2159	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
YPN_2159	SSF75138	HprK N-terminal domain-like
YPN_2160	SSF47413	lambda repressor-like DNA-binding domains
YPN_2160	SSF53822	Periplasmic binding protein-like I
YPN_2161	SSF55804	Phoshotransferase/anion transport protein
YPN_2162	SSF52794	PTS system IIB component-like
YPN_2166	SSF55811	Nudix
YPN_2167	SSF56300	Metallo-dependent phosphatases
YPN_2168	SSF141868	EAL domain-like
YPN_2169	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2170	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2171	SSF161098	MetI-like
YPN_2172	SSF161098	MetI-like
YPN_2173	SSF53850	Periplasmic binding protein-like II
YPN_2174	SSF52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
YPN_2175	SSF53271	PRTase-like
YPN_2175	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
YPN_2177	SSF110997	Sporulation related repeat
YPN_2178	SSF53244	MurD-like peptide ligases, peptide-binding domain
YPN_2178	SSF53623	MurD-like peptide ligases, catalytic domain
YPN_2179	SSF52096	ClpP/crotonase
YPN_2181	SSF55120	Pseudouridine synthase
YPN_2182	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2182	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPN_2183	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2183	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
YPN_2184	SSF46689	Homeodomain-like
YPN_2184	SSF51182	RmlC-like cupins
YPN_2185	SSF103481	Multidrug resistance efflux transporter EmrE
YPN_2187	SSF49401	Bacterial adhesins
YPN_2188	SSF53681	Aspartate/glutamate racemase
YPN_2189	SSF53901	Thiolase-like
YPN_2190	SSF51905	FAD/NAD(P)-binding domain
YPN_2190	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_2194	SSF55166	Hedgehog/DD-peptidase
YPN_2195	SSF103263	Chorismate synthase, AroC
YPN_2196	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_2197	SSF160443	SMR domain-like
YPN_2199	SSF53254	Phosphoglycerate mutase-like
YPN_2200	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPN_2200	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2200	SSF52096	ClpP/crotonase
YPN_2201	SSF53901	Thiolase-like
YPN_2203	SSF56935	Porins
YPN_2205	SSF48452	TPR-like
YPN_2207	SSF52833	Thioredoxin-like
YPN_2209	SSF82093	Heme chaperone CcmE
YPN_2213	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2215	SSF140478	LemA-like
YPN_2217	SSF57783	Zinc beta-ribbon
YPN_2217	SSF82057	Prokaryotic SH3-related domain
YPN_2219	SSF160719	gpW/gp25-like
YPN_2220	SSF144059	ImpE-like
YPN_2222	SSF69255	gp5 N-terminal domain-like
YPN_2222	SSF69279	Phage tail proteins
YPN_2222	SSF69349	Phage fibre proteins
YPN_2223	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2224	SSF103088	OmpA-like
YPN_2225	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2226	SSF46689	Homeodomain-like
YPN_2226	SSF53098	Ribonuclease H-like
YPN_2228	SSF50331	MOP-like
YPN_2229	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2230	SSF161098	MetI-like
YPN_2231	SSF161098	MetI-like
YPN_2232	SSF53850	Periplasmic binding protein-like II
YPN_2233	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2233	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPN_2235	SSF46785	"Winged helix" DNA-binding domain
YPN_2235	SSF64288	Chorismate lyase-like
YPN_2242	SSF52200	Toll/Interleukin receptor TIR domain
YPN_2246	SSF160719	gpW/gp25-like
YPN_2251	SSF53098	Ribonuclease H-like
YPN_2252	SSF141452	Hcp1-like
YPN_2256	SSF56349	DNA breaking-rejoining enzymes
YPN_2258	SSF46600	C-terminal UvrC-binding domain of UvrB
YPN_2258	SSF47781	RuvA domain 2-like
YPN_2258	SSF82771	GIY-YIG endonuclease
YPN_2259	SSF46894	C-terminal effector domain of the bipartite response regulators
YPN_2259	SSF52172	CheY-like
YPN_2263	SSF56925	OMPA-like
YPN_2265	SSF117281	Kelch motif
YPN_2266	SSF52218	Flavoproteins
YPN_2267	SSF54909	Dimeric alpha+beta barrel
YPN_2268	SSF49503	Cupredoxins
YPN_2272	SSF47598	Ribbon-helix-helix
YPN_2272	SSF51730	FAD-linked oxidoreductase
YPN_2272	SSF53720	ALDH-like
YPN_2272	SSF81935	N-terminal domain of bifunctional PutA protein
YPN_2274	SSF46785	"Winged helix" DNA-binding domain
YPN_2275	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2276	SSF161098	MetI-like
YPN_2277	SSF53850	Periplasmic binding protein-like II
YPN_2278	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
YPN_2280	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
YPN_2280	SSF88946	Sigma2 domain of RNA polymerase sigma factors
YPN_2281	SSF64518	Phase 1 flagellin
YPN_2283	SSF101116	Flagellar export chaperone FliS
YPN_2285	SSF46689	Homeodomain-like
YPN_2285	SSF51215	Regulatory protein AraC
YPN_2287	SSF55781	GAF domain-like
YPN_2288	SSF109604	HD-domain/PDEase-like
YPN_2289	SSF48150	DNA-glycosylase
YPN_2294	SSF48029	FliG
YPN_2296	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2300	SSF101801	Surface presentation of antigens (SPOA)
YPN_2300	SSF103039	CheC-like
YPN_2301	SSF101801	Surface presentation of antigens (SPOA)
YPN_2306	SSF54786	YcfA/nrd intein domain
YPN_2307	SSF143100	TTHA1013/TTHA0281-like
YPN_2308	SSF53613	Ribokinase-like
YPN_2310	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2311	SSF53822	Periplasmic binding protein-like I
YPN_2313	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2313	SSF53639	AraD/HMP-PK domain-like
YPN_2314	SSF100950	NagB/RpiA/CoA transferase-like
YPN_2314	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
YPN_2315	SSF64518	Phase 1 flagellin
YPN_2316	SSF64518	Phase 1 flagellin
YPN_2320	SSF117143	Flagellar hook protein flgE
YPN_2321	SSF117143	Flagellar hook protein flgE
YPN_2322	SSF117143	Flagellar hook protein flgE
YPN_2327	SSF101498	Anti-sigma factor FlgM
YPN_2328	SSF140566	FlgN-like
YPN_2329	SSF49373	Invasin/intimin cell-adhesion fragments
YPN_2329	SSF56436	C-type lectin-like
YPN_2330	SSF143422	Transposase IS200-like
YPN_2334	SSF160544	EscU C-terminal domain-like
YPN_2339	SSF81296	E set domains
YPN_2340	SSF47240	Ferritin-like
YPN_2341	SSF46575	DNA polymerase III theta subunit-like
YPN_2342	SSF53474	alpha/beta-Hydrolases
YPN_2343	SSF50993	Peptidase/esterase 'gauge' domain
YPN_2343	SSF53474	alpha/beta-Hydrolases
YPN_2345	SSF88697	PUA domain-like
YPN_2347	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2348	SSF51246	Rudiment single hybrid motif
YPN_2348	SSF52440	PreATP-grasp domain
YPN_2348	SSF56059	Glutathione synthetase ATP-binding domain-like
YPN_2350	SSF56322	ADC synthase
YPN_2351	SSF55811	Nudix
YPN_2352	SSF143548	Serine metabolism enzymes domain
YPN_2353	SSF50475	FMN-binding split barrel
YPN_2354	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
YPN_2354	SSF56645	Acyl-CoA dehydrogenase NM domain-like
YPN_2355	SSF103473	MFS general substrate transporter
YPN_2356	SSF51621	Phosphoenolpyruvate/pyruvate domain
YPN_2357	SSF56529	FAH
YPN_2358	SSF55331	Tautomerase/MIF
YPN_2359	SSF53213	LigB-like
YPN_2360	SSF53720	ALDH-like
YPN_2361	SSF56529	FAH
YPN_2362	SSF56529	FAH
YPN_2363	SSF46785	"Winged helix" DNA-binding domain
YPN_2364	SSF54631	CBS-domain pair
YPN_2364	SSF56176	FAD-binding/transporter-associated domain-like
YPN_2365	SSF52728	PTS IIb component
YPN_2365	SSF53062	PTS system fructose IIA component-like
YPN_2370	SSF56935	Porins
YPN_2371	SSF55785	PYP-like sensor domain (PAS domain)
YPN_2372	SSF55073	Nucleotide cyclase
YPN_2372	SSF55785	PYP-like sensor domain (PAS domain)
YPN_2374	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_2375	SSF64438	CNF1/YfiH-like putative cysteine hydrolases
YPN_2376	SSF50249	Nucleic acid-binding proteins
YPN_2378	SSF56925	OMPA-like
YPN_2385	SSF46689	Homeodomain-like
YPN_2387	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2387	SSF90123	ABC transporter transmembrane region
YPN_2388	SSF56112	Protein kinase-like (PK-like)
YPN_2389	SSF54909	Dimeric alpha+beta barrel
YPN_2390	SSF55486	Metalloproteases ("zincins"), catalytic domain
YPN_2392	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2393	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2394	SSF46689	Homeodomain-like
YPN_2394	SSF53098	Ribonuclease H-like
YPN_2395	SSF47413	lambda repressor-like DNA-binding domains
YPN_2395	SSF53822	Periplasmic binding protein-like I
YPN_2397	SSF103473	MFS general substrate transporter
YPN_2398	SSF51445	(Trans)glycosidases
YPN_2400	SSF56214	4'-phosphopantetheinyl transferase
YPN_2404	SSF46894	C-terminal effector domain of the bipartite response regulators
YPN_2404	SSF52172	CheY-like
YPN_2407	SSF88713	Glycoside hydrolase/deacetylase
YPN_2408	SSF103473	MFS general substrate transporter
YPN_2410	SSF52402	Adenine nucleotide alpha hydrolases-like
YPN_2410	SSF69864	Argininosuccinate synthetase, C-terminal domain
YPN_2411	SSF51395	FMN-linked oxidoreductases
YPN_2412	SSF51604	Enolase C-terminal domain-like
YPN_2412	SSF54826	Enolase N-terminal domain-like
YPN_2413	SSF56529	FAH
YPN_2414	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2416	SSF103473	MFS general substrate transporter
YPN_2418	SSF49373	Invasin/intimin cell-adhesion fragments
YPN_2421	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2422	SSF53098	Ribonuclease H-like
YPN_2424	SSF56796	Dehydroquinate synthase-like
YPN_2425	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2426	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2429	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2430	SSF53850	Periplasmic binding protein-like II
YPN_2430	SSF54913	GlnB-like
YPN_2431	SSF53720	ALDH-like
YPN_2432	SSF53383	PLP-dependent transferases
YPN_2433	SSF54211	Ribosomal protein S5 domain 2-like
YPN_2433	SSF56784	HAD-like
YPN_2435	SSF52317	Class I glutamine amidotransferase-like
YPN_2436	SSF51366	Ribulose-phoshate binding barrel
YPN_2437	SSF51366	Ribulose-phoshate binding barrel
YPN_2438	SSF101386	all-alpha NTP pyrophosphatases
YPN_2438	SSF141734	HisI-like
YPN_2439	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPN_2439	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2440	SSF53448	Nucleotide-diphospho-sugar transferases
YPN_2441	SSF53448	Nucleotide-diphospho-sugar transferases
YPN_2443	SSF56935	Porins
YPN_2444	SSF53807	"Helical backbone" metal receptor
YPN_2445	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
YPN_2446	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
YPN_2447	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2449	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPN_2450	SSF51905	FAD/NAD(P)-binding domain
YPN_2451	SSF53383	PLP-dependent transferases
YPN_2453	SSF54631	CBS-domain pair
YPN_2453	SSF56176	FAD-binding/transporter-associated domain-like
YPN_2455	SSF51283	dUTPase-like
YPN_2456	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2457	SSF117916	Fe-S cluster assembly (FSCA) domain-like
YPN_2457	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2458	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
YPN_2458	SSF50249	Nucleic acid-binding proteins
YPN_2458	SSF52374	Nucleotidylyl transferase
YPN_2458	SSF57770	Methionyl-tRNA synthetase (MetRS), Zn-domain
YPN_2459	SSF143422	Transposase IS200-like
YPN_2461	SSF53822	Periplasmic binding protein-like I
YPN_2462	SSF51004	C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
YPN_2463	SSF143422	Transposase IS200-like
YPN_2464	SSF103473	MFS general substrate transporter
YPN_2467	SSF53927	Cytidine deaminase-like
YPN_2468	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2468	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
YPN_2471	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2472	SSF53822	Periplasmic binding protein-like I
YPN_2474	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
YPN_2475	SSF103473	MFS general substrate transporter
YPN_2476	SSF46785	"Winged helix" DNA-binding domain
YPN_2476	SSF53850	Periplasmic binding protein-like II
YPN_2477	SSF50129	GroES-like
YPN_2477	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2478	SSF53474	alpha/beta-Hydrolases
YPN_2481	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2482	SSF102114	Radical SAM enzymes
YPN_2483	SSF53218	Molybdenum cofactor biosynthesis proteins
YPN_2483	SSF63867	MoeA C-terminal domain-like
YPN_2483	SSF63882	MoeA N-terminal region -like
YPN_2484	SSF69572	Activating enzymes of the ubiquitin-like proteins
YPN_2487	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2490	SSF160719	gpW/gp25-like
YPN_2503	SSF51261	Duplicated hybrid motif
YPN_2503	SSF53955	Lysozyme-like
YPN_2506	SSF51261	Duplicated hybrid motif
YPN_2506	SSF53955	Lysozyme-like
YPN_2507	SSF69255	gp5 N-terminal domain-like
YPN_2507	SSF69279	Phage tail proteins
YPN_2508	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2508	SSF81923	Double Clp-N motif
YPN_2509	SSF141452	Hcp1-like
YPN_2510	SSF103088	OmpA-like
YPN_2515	SSF52151	FabD/lysophospholipase-like
YPN_2515	SSF55048	Probable ACP-binding domain of malonyl-CoA ACP transacylase
YPN_2516	SSF47336	ACP-like
YPN_2518	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2519	SSF52096	ClpP/crotonase
YPN_2520	SSF52096	ClpP/crotonase
YPN_2521	SSF53901	Thiolase-like
YPN_2522	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2523	SSF53901	Thiolase-like
YPN_2524	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
YPN_2526	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2527	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPN_2527	SSF56176	FAD-binding/transporter-associated domain-like
YPN_2531	SSF53098	Ribonuclease H-like
YPN_2532	SSF69721	DsrC, the gamma subunit of dissimilatory sulfite reductase
YPN_2533	SSF54975	Acylphosphatase/BLUF domain-like
YPN_2534	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_2534	SSF88697	PUA domain-like
YPN_2535	SSF141255	YccV-like
YPN_2536	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2538	SSF52335	Methylglyoxal synthase-like
YPN_2539	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2542	SSF159894	YgaC/TfoX-N like
YPN_2543	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2544	SSF103088	OmpA-like
YPN_2544	SSF56925	OMPA-like
YPN_2545	SSF143422	Transposase IS200-like
YPN_2547	SSF54211	Ribosomal protein S5 domain 2-like
YPN_2548	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
YPN_2549	SSF53901	Thiolase-like
YPN_2550	SSF46689	Homeodomain-like
YPN_2550	SSF53098	Ribonuclease H-like
YPN_2551	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2552	SSF53901	Thiolase-like
YPN_2553	SSF143422	Transposase IS200-like
YPN_2555	SSF159594	XCC0632-like
YPN_2558	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2559	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_2560	SSF141673	MOSC N-terminal domain-like
YPN_2560	SSF50800	PK beta-barrel domain-like
YPN_2560	SSF54292	2Fe-2S ferredoxin-like
YPN_2562	SSF51395	FMN-linked oxidoreductases
YPN_2563	SSF55486	Metalloproteases ("zincins"), catalytic domain
YPN_2563	SSF63737	Leukotriene A4 hydrolase N-terminal domain
YPN_2564	SSF51690	Nicotinate/Quinolinate PRTase C-terminal domain-like
YPN_2564	SSF54675	Nicotinate/Quinolinate PRTase N-terminal domain-like
YPN_2565	SSF50249	Nucleic acid-binding proteins
YPN_2565	SSF55681	Class II aaRS and biotin synthetases
YPN_2566	SSF56935	Porins
YPN_2567	SSF53383	PLP-dependent transferases
YPN_2568	SSF56281	Metallo-hydrolase/oxidoreductase
YPN_2569	SSF55166	Hedgehog/DD-peptidase
YPN_2570	SSF141523	L,D-transpeptidase catalytic domain-like
YPN_2570	SSF47090	PGBD-like
YPN_2571	SSF143422	Transposase IS200-like
YPN_2572	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2574	SSF140570	MukF C-terminal domain-like
YPN_2574	SSF46785	"Winged helix" DNA-binding domain
YPN_2575	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_2576	SSF56112	Protein kinase-like (PK-like)
YPN_2577	SSF53448	Nucleotide-diphospho-sugar transferases
YPN_2578	SSF158997	Trm112p-like
YPN_2579	SSF50249	Nucleic acid-binding proteins
YPN_2581	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2582	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2582	SSF90123	ABC transporter transmembrane region
YPN_2583	SSF56281	Metallo-hydrolase/oxidoreductase
YPN_2584	SSF47729	IHF-like DNA-binding proteins
YPN_2585	SSF50249	Nucleic acid-binding proteins
YPN_2586	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2587	SSF55205	EPT/RTPC-like
YPN_2588	SSF53383	PLP-dependent transferases
YPN_2589	SSF54523	Pili subunits
YPN_2590	SSF101967	Adhesin YadA, collagen-binding domain
YPN_2590	SSF54523	Pili subunits
YPN_2591	SSF53774	Glutaminase/Asparaginase
YPN_2594	SSF51998	PFL-like glycyl radical enzymes
YPN_2596	SSF102114	Radical SAM enzymes
YPN_2597	SSF103473	MFS general substrate transporter
YPN_2598	SSF46689	Homeodomain-like
YPN_2598	SSF53098	Ribonuclease H-like
YPN_2599	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2600	SSF103473	MFS general substrate transporter
YPN_2601	SSF46589	tRNA-binding arm
YPN_2601	SSF55681	Class II aaRS and biotin synthetases
YPN_2602	SSF48019	post-AAA+ oligomerization domain-like
YPN_2602	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2603	SSF89392	Prokaryotic lipoproteins and lipoprotein localization factors
YPN_2604	SSF46785	"Winged helix" DNA-binding domain
YPN_2604	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2604	SSF81995	beta-sandwich domain of Sec23/24
YPN_2605	SSF46785	"Winged helix" DNA-binding domain
YPN_2605	SSF54909	Dimeric alpha+beta barrel
YPN_2606	SSF51905	FAD/NAD(P)-binding domain
YPN_2607	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2607	SSF90123	ABC transporter transmembrane region
YPN_2608	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2608	SSF90123	ABC transporter transmembrane region
YPN_2609	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPN_2610	SSF50249	Nucleic acid-binding proteins
YPN_2611	SSF143422	Transposase IS200-like
YPN_2612	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2612	SSF81923	Double Clp-N motif
YPN_2613	SSF54736	ClpS-like
YPN_2614	SSF50249	Nucleic acid-binding proteins
YPN_2615	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2616	SSF111369	HlyD-like secretion proteins
YPN_2619	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2621	SSF56821	Prismane protein-like
YPN_2622	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
YPN_2622	SSF54292	2Fe-2S ferredoxin-like
YPN_2622	SSF63380	Riboflavin synthase domain-like
YPN_2623	SSF52467	DHS-like NAD/FAD-binding domain
YPN_2623	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
YPN_2625	SSF53383	PLP-dependent transferases
YPN_2626	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2627	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2630	SSF48600	Chorismate mutase II
YPN_2631	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2632	SSF53850	Periplasmic binding protein-like II
YPN_2633	SSF161098	MetI-like
YPN_2634	SSF161098	MetI-like
YPN_2635	SSF161098	MetI-like
YPN_2636	SSF103481	Multidrug resistance efflux transporter EmrE
YPN_2637	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2638	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2639	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2640	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
YPN_2641	SSF53807	"Helical backbone" metal receptor
YPN_2642	SSF117892	Band 7/SPFH domain
YPN_2643	SSF53850	Periplasmic binding protein-like II
YPN_2644	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_2646	SSF161098	MetI-like
YPN_2647	SSF161098	MetI-like
YPN_2648	SSF50331	MOP-like
YPN_2648	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2649	SSF53850	Periplasmic binding protein-like II
YPN_2652	SSF52833	Thioredoxin-like
YPN_2653	SSF116726	TrkA C-terminal domain-like
YPN_2654	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
YPN_2655	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
YPN_2656	SSF51569	Aldolase
YPN_2657	SSF100950	NagB/RpiA/CoA transferase-like
YPN_2659	SSF56601	beta-lactamase/transpeptidase-like
YPN_2659	SSF69189	Penicillin-binding protein associated domain
YPN_2660	SSF161098	MetI-like
YPN_2661	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2661	SSF55021	ACT-like
YPN_2662	SSF53850	Periplasmic binding protein-like II
YPN_2663	SSF51197	Clavaminate synthase-like
YPN_2664	SSF56784	HAD-like
YPN_2665	SSF47616	GST C-terminal domain-like
YPN_2665	SSF52833	Thioredoxin-like
YPN_2666	SSF56935	Porins
YPN_2667	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2668	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
YPN_2669	SSF53807	"Helical backbone" metal receptor
YPN_2671	SSF46785	"Winged helix" DNA-binding domain
YPN_2671	SSF53850	Periplasmic binding protein-like II
YPN_2673	SSF51658	Xylose isomerase-like
YPN_2674	SSF141729	FimD N-terminal domain-like
YPN_2675	SSF49354	PapD-like
YPN_2675	SSF49584	Periplasmic chaperone C-domain
YPN_2678	SSF46894	C-terminal effector domain of the bipartite response regulators
YPN_2679	SSF52794	PTS system IIB component-like
YPN_2680	SSF53613	Ribokinase-like
YPN_2681	SSF55594	HPr-like
YPN_2681	SSF55804	Phoshotransferase/anion transport protein
YPN_2682	SSF55811	Nudix
YPN_2684	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2685	SSF53822	Periplasmic binding protein-like I
YPN_2686	SSF100950	NagB/RpiA/CoA transferase-like
YPN_2686	SSF75445	D-ribose-5-phosphate isomerase (RpiA), lid domain
YPN_2687	SSF53067	Actin-like ATPase domain
YPN_2688	SSF53720	ALDH-like
YPN_2689	SSF56529	FAH
YPN_2690	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2690	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
YPN_2691	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2694	SSF50104	Translation proteins SH3-like domain
YPN_2694	SSF50249	Nucleic acid-binding proteins
YPN_2695	SSF51658	Xylose isomerase-like
YPN_2696	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPN_2696	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2697	SSF46785	"Winged helix" DNA-binding domain
YPN_2697	SSF48008	GntR ligand-binding domain-like
YPN_2699	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2700	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
YPN_2701	SSF54001	Cysteine proteinases
YPN_2702	SSF141868	EAL domain-like
YPN_2703	SSF53850	Periplasmic binding protein-like II
YPN_2704	SSF161098	MetI-like
YPN_2705	SSF161098	MetI-like
YPN_2706	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2709	SSF103473	MFS general substrate transporter
YPN_2710	SSF55120	Pseudouridine synthase
YPN_2710	SSF55174	Alpha-L RNA-binding motif
YPN_2711	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2711	SSF57829	Zn-binding ribosomal proteins
YPN_2712	SSF50715	Ribosomal protein L25-like
YPN_2713	SSF143422	Transposase IS200-like
YPN_2715	SSF158651	YejL-like
YPN_2716	SSF53649	Alkaline phosphatase-like
YPN_2718	SSF54060	His-Me finger endonucleases
YPN_2722	SSF51445	(Trans)glycosidases
YPN_2723	SSF46689	Homeodomain-like
YPN_2723	SSF53697	SIS domain
YPN_2724	SSF88874	Receptor-binding domain of short tail fibre protein gp12
YPN_2730	SSF69279	Phage tail proteins
YPN_2740	SSF51658	Xylose isomerase-like
YPN_2741	SSF100950	NagB/RpiA/CoA transferase-like
YPN_2741	SSF46785	"Winged helix" DNA-binding domain
YPN_2742	SSF53639	AraD/HMP-PK domain-like
YPN_2743	SSF142764	YgbK-like
YPN_2745	SSF47413	lambda repressor-like DNA-binding domains
YPN_2745	SSF51306	LexA/Signal peptidase
YPN_2747	SSF54857	DNA damage-inducible protein DinI
YPN_2748	SSF69917	OMPT-like
YPN_2749	SSF103190	Sensory domain-like
YPN_2749	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
YPN_2750	SSF56281	Metallo-hydrolase/oxidoreductase
YPN_2751	SSF103473	MFS general substrate transporter
YPN_2753	SSF56601	beta-lactamase/transpeptidase-like
YPN_2754	SSF143422	Transposase IS200-like
YPN_2755	SSF56935	Porins
YPN_2756	SSF103473	MFS general substrate transporter
YPN_2757	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_2758	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
YPN_2759	SSF46894	C-terminal effector domain of the bipartite response regulators
YPN_2759	SSF52172	CheY-like
YPN_2760	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPN_2760	SSF52172	CheY-like
YPN_2760	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_2761	SSF101904	GyrA/ParC C-terminal domain-like
YPN_2761	SSF56719	Type II DNA topoisomerase
YPN_2762	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_2763	SSF48168	R1 subunit of ribonucleotide reductase, N-terminal domain
YPN_2763	SSF51998	PFL-like glycyl radical enzymes
YPN_2764	SSF47240	Ferritin-like
YPN_2765	SSF54292	2Fe-2S ferredoxin-like
YPN_2766	SSF49772	Ecotin, trypsin inhibitor
YPN_2767	SSF53218	Molybdenum cofactor biosynthesis proteins
YPN_2769	SSF56925	OMPA-like
YPN_2770	SSF56634	Heme-dependent catalase-like
YPN_2771	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2772	SSF56935	Porins
YPN_2773	SSF103481	Multidrug resistance efflux transporter EmrE
YPN_2775	SSF53383	PLP-dependent transferases
YPN_2775	SSF55904	Ornithine decarboxylase C-terminal domain
YPN_2777	SSF161098	MetI-like
YPN_2778	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2778	SSF54631	CBS-domain pair
YPN_2779	SSF161098	MetI-like
YPN_2780	SSF53850	Periplasmic binding protein-like II
YPN_2781	SSF53850	Periplasmic binding protein-like II
YPN_2782	SSF52821	Rhodanese/Cell cycle control phosphatase
YPN_2783	SSF53383	PLP-dependent transferases
YPN_2785	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2786	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2788	SSF48371	ARM repeat
YPN_2789	SSF53822	Periplasmic binding protein-like I
YPN_2791	SSF161098	MetI-like
YPN_2792	SSF161098	MetI-like
YPN_2793	SSF53850	Periplasmic binding protein-like II
YPN_2794	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2799	SSF55154	CYTH-like phosphatases
YPN_2800	SSF55103	FAD-linked oxidases, C-terminal domain
YPN_2800	SSF56176	FAD-binding/transporter-associated domain-like
YPN_2801	SSF56601	beta-lactamase/transpeptidase-like
YPN_2803	SSF51395	FMN-linked oxidoreductases
YPN_2805	SSF143422	Transposase IS200-like
YPN_2806	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2814	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2815	SSF46689	Homeodomain-like
YPN_2815	SSF48498	Tetracyclin repressor-like, C-terminal domain
YPN_2816	SSF111369	HlyD-like secretion proteins
YPN_2817	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2820	SSF54909	Dimeric alpha+beta barrel
YPN_2822	SSF46785	"Winged helix" DNA-binding domain
YPN_2822	SSF53850	Periplasmic binding protein-like II
YPN_2823	SSF51395	FMN-linked oxidoreductases
YPN_2824	SSF46689	Homeodomain-like
YPN_2824	SSF52172	CheY-like
YPN_2824	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2825	SSF103190	Sensory domain-like
YPN_2825	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPN_2825	SSF55785	PYP-like sensor domain (PAS domain)
YPN_2825	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_2827	SSF103473	MFS general substrate transporter
YPN_2828	SSF143422	Transposase IS200-like
YPN_2829	SSF103473	MFS general substrate transporter
YPN_2830	SSF53167	Purine and uridine phosphorylases
YPN_2831	SSF103481	Multidrug resistance efflux transporter EmrE
YPN_2832	SSF46785	"Winged helix" DNA-binding domain
YPN_2832	SSF53850	Periplasmic binding protein-like II
YPN_2834	SSF46689	Homeodomain-like
YPN_2834	SSF48498	Tetracyclin repressor-like, C-terminal domain
YPN_2835	SSF53720	ALDH-like
YPN_2836	SSF51905	FAD/NAD(P)-binding domain
YPN_2836	SSF54373	FAD-linked reductases, C-terminal domain
YPN_2837	SSF143422	Transposase IS200-like
YPN_2839	SSF54690	Molybdopterin synthase subunit MoaE
YPN_2840	SSF54285	MoaD/ThiS
YPN_2841	SSF55040	Molybdenum cofactor biosynthesis protein C, MoaC
YPN_2842	SSF102114	Radical SAM enzymes
YPN_2843	SSF142338	CofD-like
YPN_2845	SSF46600	C-terminal UvrC-binding domain of UvrB
YPN_2845	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2846	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2847	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2848	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_2849	SSF53383	PLP-dependent transferases
YPN_2850	SSF102114	Radical SAM enzymes
YPN_2851	SSF53383	PLP-dependent transferases
YPN_2852	SSF50974	Nitrous oxide reductase, N-terminal domain
YPN_2853	SSF56784	HAD-like
YPN_2854	SSF50331	MOP-like
YPN_2854	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2855	SSF161098	MetI-like
YPN_2856	SSF53850	Periplasmic binding protein-like II
YPN_2858	SSF46785	"Winged helix" DNA-binding domain
YPN_2858	SSF50331	MOP-like
YPN_2859	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2861	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2862	SSF54197	HIT-like
YPN_2863	SSF54211	Ribosomal protein S5 domain 2-like
YPN_2863	SSF55060	GHMP Kinase, C-terminal domain
YPN_2865	SSF74650	Galactose mutarotase-like
YPN_2867	SSF53254	Phosphoglycerate mutase-like
YPN_2868	SSF51569	Aldolase
YPN_2869	SSF160240	Cation efflux protein cytoplasmic domain-like
YPN_2869	SSF161111	Cation efflux protein transmembrane domain-like
YPN_2871	SSF142754	NadA-like
YPN_2872	SSF48452	TPR-like
YPN_2873	SSF103088	OmpA-like
YPN_2874	SSF52964	TolB, N-terminal domain
YPN_2874	SSF69304	Tricorn protease N-terminal domain
YPN_2875	SSF74653	TolA/TonB C-terminal domain
YPN_2878	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
YPN_2882	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2882	SSF52210	Succinyl-CoA synthetase domains
YPN_2883	SSF52210	Succinyl-CoA synthetase domains
YPN_2883	SSF56059	Glutathione synthetase ATP-binding domain-like
YPN_2884	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
YPN_2884	SSF51230	Single hybrid motif
YPN_2884	SSF52777	CoA-dependent acyltransferases
YPN_2885	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
YPN_2886	SSF46548	alpha-helical ferredoxin
YPN_2886	SSF54292	2Fe-2S ferredoxin-like
YPN_2887	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
YPN_2887	SSF51905	FAD/NAD(P)-binding domain
YPN_2887	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
YPN_2888	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
YPN_2889	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
YPN_2890	SSF48256	Citrate synthase
YPN_2891	SSF51064	Head domain of nucleotide exchange factor GrpE
YPN_2891	SSF58014	Coiled-coil domain of nucleotide exchange factor GrpE
YPN_2892	SSF111331	NAD kinase/diacylglycerol kinase-like
YPN_2893	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2895	SSF54285	MoaD/ThiS
YPN_2896	SSF55961	Bet v1-like
YPN_2897	SSF74982	Small protein B (SmpB)
YPN_2898	SSF143422	Transposase IS200-like
YPN_2899	SSF56349	DNA breaking-rejoining enzymes
YPN_2904	SSF56349	DNA breaking-rejoining enzymes
YPN_2907	SSF57783	Zinc beta-ribbon
YPN_2908	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2909	SSF47413	lambda repressor-like DNA-binding domains
YPN_2912	SSF46689	Homeodomain-like
YPN_2912	SSF53098	Ribonuclease H-like
YPN_2913	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2914	SSF88713	Glycoside hydrolase/deacetylase
YPN_2916	SSF53098	Ribonuclease H-like
YPN_2917	SSF53098	Ribonuclease H-like
YPN_2918	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_2919	SSF56281	Metallo-hydrolase/oxidoreductase
YPN_2920	SSF53955	Lysozyme-like
YPN_2920	SSF54106	LysM domain
YPN_2921	SSF56219	DNase I-like
YPN_2923	SSF51430	NAD(P)-linked oxidoreductase
YPN_2925	SSF56784	HAD-like
YPN_2926	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2926	SSF55021	ACT-like
YPN_2927	SSF161098	MetI-like
YPN_2928	SSF53850	Periplasmic binding protein-like II
YPN_2930	SSF118196	YaeB-like
YPN_2931	SSF52954	Class II aaRS ABD-related
YPN_2931	SSF55681	Class II aaRS and biotin synthetases
YPN_2931	SSF55826	YbaK/ProRS associated domain
YPN_2933	SSF75620	Release factor
YPN_2934	SSF52980	Restriction endonuclease-like
YPN_2936	SSF101744	Rof/RNase P subunit-like
YPN_2937	SSF46626	Cytochrome c
YPN_2938	SSF52402	Adenine nucleotide alpha hydrolases-like
YPN_2938	SSF56037	PheT/TilS domain
YPN_2938	SSF82829	MesJ substrate recognition domain-like
YPN_2939	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
YPN_2940	SSF52096	ClpP/crotonase
YPN_2941	SSF89550	PHP domain-like
YPN_2942	SSF53098	Ribonuclease H-like
YPN_2943	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPN_2944	SSF51161	Trimeric LpxA-like enzymes
YPN_2945	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
YPN_2946	SSF51161	Trimeric LpxA-like enzymes
YPN_2947	SSF111384	OmpH-like
YPN_2949	SSF50156	PDZ domain-like
YPN_2951	SSF64005	Undecaprenyl diphosphate synthase
YPN_2952	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_2952	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPN_2952	SSF69055	1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
YPN_2953	SSF55194	Ribosome recycling factor, RRF
YPN_2954	SSF53633	Carbamate kinase-like
YPN_2956	SSF46934	UBA-like
YPN_2956	SSF54713	Elongation factor Ts (EF-Ts), dimerisation domain
YPN_2957	SSF52313	Ribosomal protein S2
YPN_2958	SSF55920	Creatinase/aminopeptidase
YPN_2959	SSF109604	HD-domain/PDEase-like
YPN_2959	SSF55021	ACT-like
YPN_2959	SSF81301	Nucleotidyltransferase
YPN_2959	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
YPN_2959	SSF81891	Poly A polymerase C-terminal region-like
YPN_2960	SSF51161	Trimeric LpxA-like enzymes
YPN_2961	SSF143422	Transposase IS200-like
YPN_2963	SSF52218	Flavoproteins
YPN_2964	SSF55120	Pseudouridine synthase
YPN_2965	SSF158452	YqcC-like
YPN_2966	SSF143422	Transposase IS200-like
YPN_2968	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
YPN_2969	SSF102405	MCP/YpsA-like
YPN_2970	SSF47807	5' to 3' exonuclease, C-terminal subdomain
YPN_2970	SSF88723	PIN domain-like
YPN_2971	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_2973	SSF46785	"Winged helix" DNA-binding domain
YPN_2973	SSF53850	Periplasmic binding protein-like II
YPN_2974	SSF53383	PLP-dependent transferases
YPN_2975	SSF82649	SufE/NifU
YPN_2976	SSF69572	Activating enzymes of the ubiquitin-like proteins
YPN_2977	SSF50685	Barwin-like endoglucanases
YPN_2978	SSF53187	Zn-dependent exopeptidases
YPN_2979	SSF53633	Carbamate kinase-like
YPN_2979	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPN_2980	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2981	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2981	SSF52980	Restriction endonuclease-like
YPN_2982	SSF63411	LuxS/MPP-like metallohydrolase
YPN_2983	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_2983	SSF52980	Restriction endonuclease-like
YPN_2987	SSF54523	Pili subunits
YPN_2988	SSF55831	Thymidylate synthase/dCMP hydroxymethylase
YPN_2990	SSF47831	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
YPN_2990	SSF51621	Phosphoenolpyruvate/pyruvate domain
YPN_2990	SSF52009	Phosphohistidine domain
YPN_2990	SSF55781	GAF domain-like
YPN_2991	SSF55811	Nudix
YPN_2992	SSF52980	Restriction endonuclease-like
YPN_2993	SSF51430	NAD(P)-linked oxidoreductase
YPN_2995	SSF103473	MFS general substrate transporter
YPN_2996	SSF56801	Acetyl-CoA synthetase-like
YPN_2996	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
YPN_2997	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
YPN_2998	SSF50692	ADC-like
YPN_2998	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
YPN_2999	SSF47413	lambda repressor-like DNA-binding domains
YPN_2999	SSF53822	Periplasmic binding protein-like I
YPN_3000	SSF50621	Alanine racemase C-terminal domain-like
YPN_3000	SSF51419	PLP-binding barrel
YPN_3001	SSF46785	"Winged helix" DNA-binding domain
YPN_3001	SSF53850	Periplasmic binding protein-like II
YPN_3002	SSF103473	MFS general substrate transporter
YPN_3003	SSF46785	"Winged helix" DNA-binding domain
YPN_3003	SSF53850	Periplasmic binding protein-like II
YPN_3004	SSF56281	Metallo-hydrolase/oxidoreductase
YPN_3005	SSF52833	Thioredoxin-like
YPN_3006	SSF47170	Aspartate receptor, ligand-binding domain
YPN_3006	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
YPN_3008	SSF46894	C-terminal effector domain of the bipartite response regulators
YPN_3012	SSF53067	Actin-like ATPase domain
YPN_3013	SSF158544	GspK insert domain-like
YPN_3014	SSF54523	Pili subunits
YPN_3015	SSF54523	Pili subunits
YPN_3017	SSF54523	Pili subunits
YPN_3019	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3022	SSF46894	C-terminal effector domain of the bipartite response regulators
YPN_3023	SSF53056	beta-carbonic anhydrase, cab
YPN_3026	SSF103515	Autotransporter
YPN_3027	SSF48230	Chondroitin AC/alginate lyase
YPN_3027	SSF49785	Galactose-binding domain-like
YPN_3027	SSF49863	Hyaluronate lyase-like, C-terminal domain
YPN_3027	SSF74650	Galactose mutarotase-like
YPN_3029	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3030	SSF46689	Homeodomain-like
YPN_3030	SSF53098	Ribonuclease H-like
YPN_3031	SSF143422	Transposase IS200-like
YPN_3032	SSF53649	Alkaline phosphatase-like
YPN_3033	SSF100950	NagB/RpiA/CoA transferase-like
YPN_3033	SSF46785	"Winged helix" DNA-binding domain
YPN_3034	SSF51569	Aldolase
YPN_3035	SSF53697	SIS domain
YPN_3036	SSF52728	PTS IIb component
YPN_3039	SSF53062	PTS system fructose IIA component-like
YPN_3040	SSF51338	Composite domain of metallo-dependent hydrolases
YPN_3040	SSF51556	Metallo-dependent hydrolases
YPN_3041	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_3042	SSF48208	Six-hairpin glycosidases
YPN_3043	SSF102114	Radical SAM enzymes
YPN_3044	SSF53649	Alkaline phosphatase-like
YPN_3046	SSF51569	Aldolase
YPN_3047	SSF52317	Class I glutamine amidotransferase-like
YPN_3048	SSF47413	lambda repressor-like DNA-binding domains
YPN_3048	SSF53822	Periplasmic binding protein-like I
YPN_3049	SSF103473	MFS general substrate transporter
YPN_3050	SSF51011	Glycosyl hydrolase domain
YPN_3050	SSF51445	(Trans)glycosidases
YPN_3050	SSF74650	Galactose mutarotase-like
YPN_3051	SSF47413	lambda repressor-like DNA-binding domains
YPN_3051	SSF53822	Periplasmic binding protein-like I
YPN_3052	SSF56935	Porins
YPN_3053	SSF55604	Glucose permease domain IIB
YPN_3054	SSF51445	(Trans)glycosidases
YPN_3054	SSF52317	Class I glutamine amidotransferase-like
YPN_3055	SSF51445	(Trans)glycosidases
YPN_3056	SSF161098	MetI-like
YPN_3057	SSF160964	MalF N-terminal region-like
YPN_3057	SSF161098	MetI-like
YPN_3058	SSF53850	Periplasmic binding protein-like II
YPN_3059	SSF50331	MOP-like
YPN_3059	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3060	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3062	SSF53822	Periplasmic binding protein-like I
YPN_3064	SSF54001	Cysteine proteinases
YPN_3065	SSF46785	"Winged helix" DNA-binding domain
YPN_3072	SSF69369	Cloacin translocation domain
YPN_3073	SSF140931	Fic-like
YPN_3077	SSF46955	Putative DNA-binding domain
YPN_3079	SSF46785	"Winged helix" DNA-binding domain
YPN_3079	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3079	SSF57783	Zinc beta-ribbon
YPN_3080	SSF47413	lambda repressor-like DNA-binding domains
YPN_3082	SSF47413	lambda repressor-like DNA-binding domains
YPN_3083	SSF143011	RelE-like
YPN_3086	SSF56349	DNA breaking-rejoining enzymes
YPN_3087	SSF50249	Nucleic acid-binding proteins
YPN_3087	SSF55681	Class II aaRS and biotin synthetases
YPN_3088	SSF75620	Release factor
YPN_3089	SSF64182	DHH phosphoesterases
YPN_3090	SSF52833	Thioredoxin-like
YPN_3090	SSF54423	DsbC/DsbG N-terminal domain-like
YPN_3091	SSF47823	lambda integrase-like, N-terminal domain
YPN_3091	SSF56349	DNA breaking-rejoining enzymes
YPN_3092	SSF52218	Flavoproteins
YPN_3094	SSF103190	Sensory domain-like
YPN_3094	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPN_3094	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_3095	SSF46894	C-terminal effector domain of the bipartite response regulators
YPN_3095	SSF52172	CheY-like
YPN_3097	SSF109910	YgfY-like
YPN_3098	SSF101790	Aminomethyltransferase beta-barrel domain
YPN_3098	SSF103025	Folate-binding domain
YPN_3102	SSF101967	Adhesin YadA, collagen-binding domain
YPN_3102	SSF54523	Pili subunits
YPN_3104	SSF53383	PLP-dependent transferases
YPN_3105	SSF51230	Single hybrid motif
YPN_3106	SSF101790	Aminomethyltransferase beta-barrel domain
YPN_3106	SSF103025	Folate-binding domain
YPN_3107	SSF51905	FAD/NAD(P)-binding domain
YPN_3108	SSF51905	FAD/NAD(P)-binding domain
YPN_3109	SSF53092	Creatinase/prolidase N-terminal domain
YPN_3109	SSF55920	Creatinase/aminopeptidase
YPN_3110	SSF101327	YgfB-like
YPN_3111	SSF102829	Cell division protein ZapA-like
YPN_3112	SSF100950	NagB/RpiA/CoA transferase-like
YPN_3113	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_3113	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
YPN_3113	SSF55021	ACT-like
YPN_3114	SSF100950	NagB/RpiA/CoA transferase-like
YPN_3114	SSF75445	D-ribose-5-phosphate isomerase (RpiA), lid domain
YPN_3115	SSF46785	"Winged helix" DNA-binding domain
YPN_3115	SSF53850	Periplasmic binding protein-like II
YPN_3118	SSF50182	Sm-like ribonucleoproteins
YPN_3118	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
YPN_3118	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
YPN_3119	SSF51569	Aldolase
YPN_3120	SSF53748	Phosphoglycerate kinase
YPN_3121	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_3121	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPN_3122	SSF143422	Transposase IS200-like
YPN_3123	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
YPN_3123	SSF52922	TK C-terminal domain-like
YPN_3125	SSF50022	ISP domain
YPN_3126	SSF50621	Alanine racemase C-terminal domain-like
YPN_3126	SSF51419	PLP-binding barrel
YPN_3127	SSF55973	S-adenosylmethionine synthetase
YPN_3129	SSF54060	His-Me finger endonucleases
YPN_3131	SSF75217	alpha/beta knot
YPN_3131	SSF88697	PUA domain-like
YPN_3132	SSF52440	PreATP-grasp domain
YPN_3132	SSF56059	Glutathione synthetase ATP-binding domain-like
YPN_3133	SSF143456	VC0467-like
YPN_3134	SSF53098	Ribonuclease H-like
YPN_3135	SSF56317	Carbon-nitrogen hydrolase
YPN_3136	SSF55909	Pentein
YPN_3137	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3138	SSF51419	PLP-binding barrel
YPN_3139	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPN_3139	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_3141	SSF69786	YggU-like
YPN_3142	SSF52972	ITPase-like
YPN_3143	SSF102114	Radical SAM enzymes
YPN_3144	SSF51120	beta-Roll
YPN_3144	SSF69318	Integrin alpha N-terminal domain
YPN_3147	SSF56601	beta-lactamase/transpeptidase-like
YPN_3149	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_3150	SSF48150	DNA-glycosylase
YPN_3150	SSF55811	Nudix
YPN_3151	SSF111148	YggX-like
YPN_3152	SSF53955	Lysozyme-like
YPN_3153	SSF53807	"Helical backbone" metal receptor
YPN_3154	SSF56935	Porins
YPN_3156	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3157	SSF53822	Periplasmic binding protein-like I
YPN_3158	SSF52172	CheY-like
YPN_3158	SSF53383	PLP-dependent transferases
YPN_3158	SSF55904	Ornithine decarboxylase C-terminal domain
YPN_3160	SSF56349	DNA breaking-rejoining enzymes
YPN_3165	SSF51261	Duplicated hybrid motif
YPN_3165	SSF53955	Lysozyme-like
YPN_3168	SSF53955	Lysozyme-like
YPN_3169	SSF69255	gp5 N-terminal domain-like
YPN_3169	SSF69279	Phage tail proteins
YPN_3170	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3170	SSF81923	Double Clp-N motif
YPN_3171	SSF141452	Hcp1-like
YPN_3172	SSF103088	OmpA-like
YPN_3182	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPN_3183	SSF46894	C-terminal effector domain of the bipartite response regulators
YPN_3183	SSF75516	Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
YPN_3184	SSF53474	alpha/beta-Hydrolases
YPN_3185	SSF49482	Aromatic compound dioxygenase
YPN_3186	SSF103473	MFS general substrate transporter
YPN_3189	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPN_3191	SSF51905	FAD/NAD(P)-binding domain
YPN_3192	SSF56935	Porins
YPN_3193	SSF103473	MFS general substrate transporter
YPN_3194	SSF46689	Homeodomain-like
YPN_3194	SSF48295	TrpR-like
YPN_3195	SSF53098	Ribonuclease H-like
YPN_3196	SSF51445	(Trans)glycosidases
YPN_3197	SSF47413	lambda repressor-like DNA-binding domains
YPN_3197	SSF53822	Periplasmic binding protein-like I
YPN_3202	SSF48452	TPR-like
YPN_3203	SSF69255	gp5 N-terminal domain-like
YPN_3203	SSF69279	Phage tail proteins
YPN_3203	SSF69349	Phage fibre proteins
YPN_3204	SSF103515	Autotransporter
YPN_3204	SSF51126	Pectin lyase-like
YPN_3205	SSF103515	Autotransporter
YPN_3205	SSF51126	Pectin lyase-like
YPN_3210	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3210	SSF90123	ABC transporter transmembrane region
YPN_3211	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3211	SSF90123	ABC transporter transmembrane region
YPN_3212	SSF103473	MFS general substrate transporter
YPN_3213	SSF53474	alpha/beta-Hydrolases
YPN_3214	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_3215	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_3216	SSF47336	ACP-like
YPN_3216	SSF52777	CoA-dependent acyltransferases
YPN_3216	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_3216	SSF53474	alpha/beta-Hydrolases
YPN_3216	SSF56801	Acetyl-CoA synthetase-like
YPN_3217	SSF47336	ACP-like
YPN_3217	SSF56801	Acetyl-CoA synthetase-like
YPN_3218	SSF47336	ACP-like
YPN_3218	SSF52777	CoA-dependent acyltransferases
YPN_3218	SSF56801	Acetyl-CoA synthetase-like
YPN_3219	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3220	SSF46689	Homeodomain-like
YPN_3220	SSF53098	Ribonuclease H-like
YPN_3221	SSF47336	ACP-like
YPN_3221	SSF53901	Thiolase-like
YPN_3221	SSF56801	Acetyl-CoA synthetase-like
YPN_3222	SSF56935	Porins
YPN_3223	SSF53187	Zn-dependent exopeptidases
YPN_3223	SSF55031	Bacterial exopeptidase dimerisation domain
YPN_3225	SSF52058	L domain-like
YPN_3226	SSF52058	L domain-like
YPN_3227	SSF52058	L domain-like
YPN_3228	SSF103515	Autotransporter
YPN_3228	SSF51126	Pectin lyase-like
YPN_3231	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
YPN_3231	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
YPN_3231	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
YPN_3232	SSF111369	HlyD-like secretion proteins
YPN_3234	SSF141868	EAL domain-like
YPN_3234	SSF55073	Nucleotide cyclase
YPN_3234	SSF55785	PYP-like sensor domain (PAS domain)
YPN_3235	SSF53098	Ribonuclease H-like
YPN_3236	SSF46689	Homeodomain-like
YPN_3236	SSF48295	TrpR-like
YPN_3237	SSF47060	S15/NS1 RNA-binding domain
YPN_3238	SSF55120	Pseudouridine synthase
YPN_3238	SSF88697	PUA domain-like
YPN_3239	SSF89919	Ribosome-binding factor A, RbfA
YPN_3240	SSF46955	Putative DNA-binding domain
YPN_3240	SSF50447	Translation proteins
YPN_3240	SSF52156	Initiation factor IF2/eIF5b, domain 3
YPN_3240	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3241	SSF47794	Rad51 N-terminal domain-like
YPN_3241	SSF50249	Nucleic acid-binding proteins
YPN_3241	SSF54814	Prokaryotic type KH domain (KH-domain type II)
YPN_3241	SSF69705	Transcription factor NusA, N-terminal domain
YPN_3242	SSF74942	YhbC-like, C-terminal domain
YPN_3242	SSF75420	YhbC-like, N-terminal domain
YPN_3244	SSF53738	Phosphoglucomutase, first 3 domains
YPN_3244	SSF55957	Phosphoglucomutase, C-terminal domain
YPN_3245	SSF51717	Dihydropteroate synthetase-like
YPN_3246	SSF140990	FtsH protease domain-like
YPN_3246	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3247	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_3248	SSF75471	YhbY-like
YPN_3249	SSF46557	GreA transcript cleavage protein, N-terminal domain
YPN_3249	SSF54534	FKBP-like
YPN_3250	SSF56601	beta-lactamase/transpeptidase-like
YPN_3251	SSF52172	CheY-like
YPN_3252	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPN_3252	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_3253	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3253	SSF82051	Obg GTP-binding protein N-terminal domain
YPN_3254	SSF103481	Multidrug resistance efflux transporter EmrE
YPN_3255	SSF110324	Ribosomal L27 protein-like
YPN_3256	SSF141091	L21p-like
YPN_3257	SSF48576	Terpenoid synthases
YPN_3258	SSF46955	Putative DNA-binding domain
YPN_3259	SSF47413	lambda repressor-like DNA-binding domains
YPN_3260	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_3260	SSF56327	LDH C-terminal domain-like
YPN_3261	SSF46785	"Winged helix" DNA-binding domain
YPN_3261	SSF55252	C-terminal domain of arginine repressor
YPN_3262	SSF159871	YdgH-like
YPN_3263	SSF51984	MurCD N-terminal domain
YPN_3263	SSF53244	MurD-like peptide ligases, peptide-binding domain
YPN_3263	SSF53623	MurD-like peptide ligases, catalytic domain
YPN_3264	SSF56655	Carbohydrate phosphatase
YPN_3265	SSF50324	Inorganic pyrophosphatase
YPN_3266	SSF110857	Gamma-glutamyl cyclotransferase-like
YPN_3269	SSF55068	Peptide methionine sulfoxide reductase
YPN_3270	SSF54631	CBS-domain pair
YPN_3270	SSF56176	FAD-binding/transporter-associated domain-like
YPN_3272	SSF52833	Thioredoxin-like
YPN_3273	SSF56655	Carbohydrate phosphatase
YPN_3274	SSF55816	5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
YPN_3274	SSF56300	Metallo-dependent phosphatases
YPN_3276	SSF54534	FKBP-like
YPN_3279	SSF143422	Transposase IS200-like
YPN_3280	SSF55653	Ribosomal protein L9 C-domain
YPN_3280	SSF55658	L9 N-domain-like
YPN_3281	SSF46911	Ribosomal protein S18
YPN_3282	SSF50249	Nucleic acid-binding proteins
YPN_3283	SSF54995	Ribosomal protein S6
YPN_3284	SSF53474	alpha/beta-Hydrolases
YPN_3285	SSF46689	Homeodomain-like
YPN_3285	SSF53098	Ribonuclease H-like
YPN_3286	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3288	SSF159871	YdgH-like
YPN_3289	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
YPN_3289	SSF56645	Acyl-CoA dehydrogenase NM domain-like
YPN_3290	SSF55315	L30e-like
YPN_3290	SSF75217	alpha/beta knot
YPN_3291	SSF50249	Nucleic acid-binding proteins
YPN_3292	SSF46785	"Winged helix" DNA-binding domain
YPN_3293	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3295	SSF117892	Band 7/SPFH domain
YPN_3296	SSF117892	Band 7/SPFH domain
YPN_3297	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3297	SSF54980	EF-G C-terminal domain-like
YPN_3298	SSF50182	Sm-like ribonucleoproteins
YPN_3299	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3300	SSF118116	DNA mismatch repair protein MutL
YPN_3300	SSF54211	Ribosomal protein S5 domain 2-like
YPN_3300	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_3301	SSF53187	Zn-dependent exopeptidases
YPN_3301	SSF54106	LysM domain
YPN_3302	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3303	SSF53613	Ribokinase-like
YPN_3303	SSF64153	YjeF N-terminal domain-like
YPN_3304	SSF46548	alpha-helical ferredoxin
YPN_3305	SSF53098	Ribonuclease H-like
YPN_3306	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3308	SSF50182	Sm-like ribonucleoproteins
YPN_3308	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
YPN_3308	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
YPN_3309	SSF55681	Class II aaRS and biotin synthetases
YPN_3311	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
YPN_3311	SSF51905	FAD/NAD(P)-binding domain
YPN_3311	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
YPN_3312	SSF46548	alpha-helical ferredoxin
YPN_3312	SSF54292	2Fe-2S ferredoxin-like
YPN_3313	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
YPN_3314	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
YPN_3315	SSF103481	Multidrug resistance efflux transporter EmrE
YPN_3316	SSF50104	Translation proteins SH3-like domain
YPN_3316	SSF50249	Nucleic acid-binding proteins
YPN_3317	SSF102114	Radical SAM enzymes
YPN_3319	SSF48592	GroEL equatorial domain-like
YPN_3319	SSF52029	GroEL apical domain-like
YPN_3319	SSF54849	GroEL-intermediate domain like
YPN_3320	SSF50129	GroES-like
YPN_3322	SSF48557	L-aspartase-like
YPN_3324	SSF54913	GlnB-like
YPN_3325	SSF52833	Thioredoxin-like
YPN_3325	SSF74863	Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)
YPN_3326	SSF50692	ADC-like
YPN_3326	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
YPN_3327	SSF54862	4Fe-4S ferredoxins
YPN_3328	SSF51971	Nucleotide-binding domain
YPN_3328	SSF54862	4Fe-4S ferredoxins
YPN_3329	SSF46689	Homeodomain-like
YPN_3329	SSF48498	Tetracyclin repressor-like, C-terminal domain
YPN_3332	SSF50203	Bacterial enterotoxins
YPN_3337	SSF46689	Homeodomain-like
YPN_3337	SSF51182	RmlC-like cupins
YPN_3338	SSF46689	Homeodomain-like
YPN_3338	SSF51215	Regulatory protein AraC
YPN_3340	SSF53067	Actin-like ATPase domain
YPN_3341	SSF51658	Xylose isomerase-like
YPN_3342	SSF53639	AraD/HMP-PK domain-like
YPN_3343	SSF56796	Dehydroquinate synthase-like
YPN_3344	SSF54909	Dimeric alpha+beta barrel
YPN_3345	SSF50249	Nucleic acid-binding proteins
YPN_3346	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3347	SSF142906	YjbR-like
YPN_3348	SSF53383	PLP-dependent transferases
YPN_3349	SSF50621	Alanine racemase C-terminal domain-like
YPN_3349	SSF51419	PLP-binding barrel
YPN_3350	SSF48024	N-terminal domain of DnaB helicase
YPN_3350	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3351	SSF50129	GroES-like
YPN_3351	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_3353	SSF51395	FMN-linked oxidoreductases
YPN_3354	SSF46785	"Winged helix" DNA-binding domain
YPN_3355	SSF46785	"Winged helix" DNA-binding domain
YPN_3355	SSF51306	LexA/Signal peptidase
YPN_3357	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
YPN_3359	SSF64288	Chorismate lyase-like
YPN_3360	SSF103515	Autotransporter
YPN_3360	SSF51126	Pectin lyase-like
YPN_3361	SSF49265	Fibronectin type III
YPN_3361	SSF51055	Carbohydrate binding domain
YPN_3361	SSF56176	FAD-binding/transporter-associated domain-like
YPN_3363	SSF103473	MFS general substrate transporter
YPN_3364	SSF49354	PapD-like
YPN_3364	SSF49584	Periplasmic chaperone C-domain
YPN_3365	SSF141729	FimD N-terminal domain-like
YPN_3370	SSF158682	TerB-like
YPN_3373	SSF56059	Glutathione synthetase ATP-binding domain-like
YPN_3374	SSF53271	PRTase-like
YPN_3375	SSF56784	HAD-like
YPN_3377	SSF51621	Phosphoenolpyruvate/pyruvate domain
YPN_3378	SSF46785	"Winged helix" DNA-binding domain
YPN_3379	SSF51730	FAD-linked oxidoreductase
YPN_3380	SSF102114	Radical SAM enzymes
YPN_3381	SSF144064	Heme iron utilization protein-like
YPN_3382	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_3384	SSF56935	Porins
YPN_3385	SSF144064	Heme iron utilization protein-like
YPN_3386	SSF53807	"Helical backbone" metal receptor
YPN_3387	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
YPN_3388	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3389	SSF53383	PLP-dependent transferases
YPN_3391	SSF46785	"Winged helix" DNA-binding domain
YPN_3391	SSF53850	Periplasmic binding protein-like II
YPN_3392	SSF64307	SirA-like
YPN_3394	SSF160544	EscU C-terminal domain-like
YPN_3398	SSF101801	Surface presentation of antigens (SPOA)
YPN_3401	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3409	SSF46689	Homeodomain-like
YPN_3413	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
YPN_3413	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPN_3413	SSF52172	CheY-like
YPN_3413	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_3414	SSF46894	C-terminal effector domain of the bipartite response regulators
YPN_3414	SSF52172	CheY-like
YPN_3415	SSF118215	Proton glutamate symport protein
YPN_3416	SSF56801	Acetyl-CoA synthetase-like
YPN_3419	SSF53474	alpha/beta-Hydrolases
YPN_3420	SSF46689	Homeodomain-like
YPN_3420	SSF53098	Ribonuclease H-like
YPN_3421	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3422	SSF53098	Ribonuclease H-like
YPN_3423	SSF46689	Homeodomain-like
YPN_3425	SSF46689	Homeodomain-like
YPN_3425	SSF53098	Ribonuclease H-like
YPN_3426	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3427	SSF47616	GST C-terminal domain-like
YPN_3427	SSF52833	Thioredoxin-like
YPN_3428	SSF46785	"Winged helix" DNA-binding domain
YPN_3428	SSF53850	Periplasmic binding protein-like II
YPN_3429	SSF51182	RmlC-like cupins
YPN_3430	SSF53790	Tetrapyrrole methylase
YPN_3431	SSF53822	Periplasmic binding protein-like I
YPN_3432	SSF52980	Restriction endonuclease-like
YPN_3433	SSF53697	SIS domain
YPN_3435	SSF53955	Lysozyme-like
YPN_3436	SSF52317	Class I glutamine amidotransferase-like
YPN_3437	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
YPN_3437	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPN_3437	SSF52172	CheY-like
YPN_3437	SSF55785	PYP-like sensor domain (PAS domain)
YPN_3437	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_3438	SSF102114	Radical SAM enzymes
YPN_3439	SSF51395	FMN-linked oxidoreductases
YPN_3439	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
YPN_3439	SSF69336	Alpha subunit of glutamate synthase, C-terminal domain
YPN_3440	SSF46548	alpha-helical ferredoxin
YPN_3440	SSF51971	Nucleotide-binding domain
YPN_3442	SSF101738	SspB-like
YPN_3443	SSF47616	GST C-terminal domain-like
YPN_3443	SSF52833	Thioredoxin-like
YPN_3444	SSF54211	Ribosomal protein S5 domain 2-like
YPN_3445	SSF52161	Ribosomal protein L13
YPN_3446	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3448	SSF50156	PDZ domain-like
YPN_3448	SSF50494	Trypsin-like serine proteases
YPN_3449	SSF143422	Transposase IS200-like
YPN_3450	SSF50156	PDZ domain-like
YPN_3450	SSF50494	Trypsin-like serine proteases
YPN_3451	SSF55205	EPT/RTPC-like
YPN_3452	SSF82657	BolA-like
YPN_3453	SSF52091	SpoIIaa-like
YPN_3457	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3459	SSF53697	SIS domain
YPN_3460	SSF56784	HAD-like
YPN_3463	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3465	SSF69754	Ribosome binding protein Y (YfiA homologue)
YPN_3466	SSF69754	Ribosome binding protein Y (YfiA homologue)
YPN_3467	SSF55804	Phoshotransferase/anion transport protein
YPN_3468	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3469	SSF55594	HPr-like
YPN_3470	SSF53671	Aspartate/ornithine carbamoyltransferase
YPN_3471	SSF54893	Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
YPN_3471	SSF57825	Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
YPN_3472	SSF55298	YjgF-like
YPN_3473	SSF69318	Integrin alpha N-terminal domain
YPN_3474	SSF47413	lambda repressor-like DNA-binding domains
YPN_3474	SSF53822	Periplasmic binding protein-like I
YPN_3475	SSF55604	Glucose permease domain IIB
YPN_3476	SSF51011	Glycosyl hydrolase domain
YPN_3476	SSF51445	(Trans)glycosidases
YPN_3477	SSF54534	FKBP-like
YPN_3478	SSF47175	Cytochromes
YPN_3480	SSF111283	Putative modulator of DNA gyrase, PmbA/TldD
YPN_3481	SSF158710	PSPTO4464-like
YPN_3482	SSF52038	Barstar-related
YPN_3483	SSF53933	Microbial ribonucleases
YPN_3484	SSF53720	ALDH-like
YPN_3485	SSF53720	ALDH-like
YPN_3487	SSF111369	HlyD-like secretion proteins
YPN_3489	SSF46785	"Winged helix" DNA-binding domain
YPN_3489	SSF53850	Periplasmic binding protein-like II
YPN_3490	SSF46785	"Winged helix" DNA-binding domain
YPN_3493	SSF69318	Integrin alpha N-terminal domain
YPN_3495	SSF55166	Hedgehog/DD-peptidase
YPN_3497	SSF52799	(Phosphotyrosine protein) phosphatases II
YPN_3498	SSF52799	(Phosphotyrosine protein) phosphatases II
YPN_3499	SSF111283	Putative modulator of DNA gyrase, PmbA/TldD
YPN_3500	SSF56317	Carbon-nitrogen hydrolase
YPN_3502	SSF50249	Nucleic acid-binding proteins
YPN_3503	SSF52972	ITPase-like
YPN_3506	SSF53067	Actin-like ATPase domain
YPN_3507	SSF141868	EAL domain-like
YPN_3507	SSF55073	Nucleotide cyclase
YPN_3508	SSF50129	GroES-like
YPN_3508	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_3509	SSF56524	Oxidoreductase molybdopterin-binding domain
YPN_3511	SSF52304	Type II 3-dehydroquinate dehydratase
YPN_3512	SSF51230	Single hybrid motif
YPN_3513	SSF51246	Rudiment single hybrid motif
YPN_3513	SSF52440	PreATP-grasp domain
YPN_3513	SSF56059	Glutathione synthetase ATP-binding domain-like
YPN_3516	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_3517	SSF51395	FMN-linked oxidoreductases
YPN_3518	SSF46689	Homeodomain-like
YPN_3519	SSF160631	SMI1/KNR4-like
YPN_3520	SSF46785	"Winged helix" DNA-binding domain
YPN_3520	SSF48008	GntR ligand-binding domain-like
YPN_3521	SSF103473	MFS general substrate transporter
YPN_3522	SSF69118	AhpD-like
YPN_3523	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPN_3523	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_3524	SSF56281	Metallo-hydrolase/oxidoreductase
YPN_3526	SSF50249	Nucleic acid-binding proteins
YPN_3527	SSF50249	Nucleic acid-binding proteins
YPN_3528	SSF143422	Transposase IS200-like
YPN_3529	SSF46565	Chaperone J-domain
YPN_3530	SSF63829	Calcium-dependent phosphotriesterase
YPN_3531	SSF47616	GST C-terminal domain-like
YPN_3531	SSF52833	Thioredoxin-like
YPN_3532	SSF53697	SIS domain
YPN_3533	SSF53067	Actin-like ATPase domain
YPN_3536	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3537	SSF53822	Periplasmic binding protein-like I
YPN_3543	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3544	SSF161098	MetI-like
YPN_3545	SSF51679	Bacterial luciferase-like
YPN_3546	SSF53850	Periplasmic binding protein-like II
YPN_3547	SSF52218	Flavoproteins
YPN_3548	SSF51569	Aldolase
YPN_3549	SSF53613	Ribokinase-like
YPN_3550	SSF102546	RbsD-like
YPN_3551	SSF46689	Homeodomain-like
YPN_3551	SSF51215	Regulatory protein AraC
YPN_3552	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_3552	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPN_3553	SSF51658	Xylose isomerase-like
YPN_3556	SSF55724	Mog1p/PsbP-like
YPN_3557	SSF69255	gp5 N-terminal domain-like
YPN_3557	SSF69279	Phage tail proteins
YPN_3557	SSF69349	Phage fibre proteins
YPN_3559	SSF47413	lambda repressor-like DNA-binding domains
YPN_3562	SSF160631	SMI1/KNR4-like
YPN_3565	SSF55724	Mog1p/PsbP-like
YPN_3566	SSF69255	gp5 N-terminal domain-like
YPN_3566	SSF69279	Phage tail proteins
YPN_3566	SSF69349	Phage fibre proteins
YPN_3569	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3572	SSF46689	Homeodomain-like
YPN_3573	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3573	SSF81923	Double Clp-N motif
YPN_3577	SSF49879	SMAD/FHA domain
YPN_3580	SSF46689	Homeodomain-like
YPN_3580	SSF48295	TrpR-like
YPN_3581	SSF53098	Ribonuclease H-like
YPN_3585	SSF51905	FAD/NAD(P)-binding domain
YPN_3585	SSF54373	FAD-linked reductases, C-terminal domain
YPN_3586	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPN_3587	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPN_3588	SSF51161	Trimeric LpxA-like enzymes
YPN_3588	SSF53448	Nucleotide-diphospho-sugar transferases
YPN_3589	SSF51011	Glycosyl hydrolase domain
YPN_3589	SSF51445	(Trans)glycosidases
YPN_3589	SSF81296	E set domains
YPN_3590	SSF51011	Glycosyl hydrolase domain
YPN_3590	SSF51445	(Trans)glycosidases
YPN_3590	SSF81296	E set domains
YPN_3591	SSF55781	GAF domain-like
YPN_3591	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_3592	SSF49373	Invasin/intimin cell-adhesion fragments
YPN_3597	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_3597	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPN_3602	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3604	SSF47413	lambda repressor-like DNA-binding domains
YPN_3604	SSF53822	Periplasmic binding protein-like I
YPN_3605	SSF51182	RmlC-like cupins
YPN_3607	SSF46894	C-terminal effector domain of the bipartite response regulators
YPN_3607	SSF52172	CheY-like
YPN_3608	SSF53613	Ribokinase-like
YPN_3609	SSF51569	Aldolase
YPN_3610	SSF51182	RmlC-like cupins
YPN_3611	SSF53822	Periplasmic binding protein-like I
YPN_3613	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3614	SSF158472	HAMP domain-like
YPN_3614	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPN_3614	SSF52172	CheY-like
YPN_3614	SSF55785	PYP-like sensor domain (PAS domain)
YPN_3614	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_3615	SSF160996	HI0933 insert domain-like
YPN_3615	SSF51905	FAD/NAD(P)-binding domain
YPN_3617	SSF143422	Transposase IS200-like
YPN_3619	SSF52402	Adenine nucleotide alpha hydrolases-like
YPN_3620	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_3620	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
YPN_3621	SSF51120	beta-Roll
YPN_3621	SSF55486	Metalloproteases ("zincins"), catalytic domain
YPN_3622	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_3623	SSF55486	Metalloproteases ("zincins"), catalytic domain
YPN_3625	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_3626	SSF51905	FAD/NAD(P)-binding domain
YPN_3626	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
YPN_3630	SSF110738	Glycerate kinase I
YPN_3634	SSF103515	Autotransporter
YPN_3634	SSF51126	Pectin lyase-like
YPN_3636	SSF54197	HIT-like
YPN_3638	SSF141868	EAL domain-like
YPN_3639	SSF55331	Tautomerase/MIF
YPN_3640	SSF53613	Ribokinase-like
YPN_3641	SSF63411	LuxS/MPP-like metallohydrolase
YPN_3642	SSF118215	Proton glutamate symport protein
YPN_3643	SSF49785	Galactose-binding domain-like
YPN_3645	SSF56935	Porins
YPN_3646	SSF141868	EAL domain-like
YPN_3646	SSF55073	Nucleotide cyclase
YPN_3647	SSF48208	Six-hairpin glycosidases
YPN_3648	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3649	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3650	SSF161098	MetI-like
YPN_3651	SSF161098	MetI-like
YPN_3652	SSF53850	Periplasmic binding protein-like II
YPN_3654	SSF51126	Pectin lyase-like
YPN_3655	SSF103473	MFS general substrate transporter
YPN_3656	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_3657	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3658	SSF46689	Homeodomain-like
YPN_3658	SSF53098	Ribonuclease H-like
YPN_3660	SSF46894	C-terminal effector domain of the bipartite response regulators
YPN_3660	SSF52172	CheY-like
YPN_3661	SSF53649	Alkaline phosphatase-like
YPN_3662	SSF53474	alpha/beta-Hydrolases
YPN_3664	SSF48557	L-aspartase-like
YPN_3665	SSF111326	Urocanase
YPN_3666	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
YPN_3667	SSF53271	PRTase-like
YPN_3669	SSF56059	Glutathione synthetase ATP-binding domain-like
YPN_3670	SSF53807	"Helical backbone" metal receptor
YPN_3671	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
YPN_3672	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
YPN_3673	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3676	SSF47413	lambda repressor-like DNA-binding domains
YPN_3680	SSF56349	DNA breaking-rejoining enzymes
YPN_3681	SSF46689	Homeodomain-like
YPN_3681	SSF53822	Periplasmic binding protein-like I
YPN_3683	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3684	SSF53822	Periplasmic binding protein-like I
YPN_3685	SSF51658	Xylose isomerase-like
YPN_3686	SSF53067	Actin-like ATPase domain
YPN_3687	SSF49401	Bacterial adhesins
YPN_3688	SSF49354	PapD-like
YPN_3688	SSF49584	Periplasmic chaperone C-domain
YPN_3690	SSF141729	FimD N-terminal domain-like
YPN_3691	SSF49401	Bacterial adhesins
YPN_3693	SSF46689	Homeodomain-like
YPN_3693	SSF48295	TrpR-like
YPN_3694	SSF53098	Ribonuclease H-like
YPN_3695	SSF103473	MFS general substrate transporter
YPN_3700	SSF46785	"Winged helix" DNA-binding domain
YPN_3700	SSF50447	Translation proteins
YPN_3700	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
YPN_3700	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3701	SSF53383	PLP-dependent transferases
YPN_3702	SSF144020	FdhE-like
YPN_3703	SSF81342	Transmembrane di-heme cytochromes
YPN_3704	SSF54862	4Fe-4S ferredoxins
YPN_3705	SSF50692	ADC-like
YPN_3705	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
YPN_3706	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
YPN_3707	SSF53927	Cytidine deaminase-like
YPN_3708	SSF46609	Fe,Mn superoxide dismutase (SOD), N-terminal domain
YPN_3708	SSF54719	Fe,Mn superoxide dismutase (SOD), C-terminal domain
YPN_3709	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
YPN_3713	SSF158668	MtlR-like
YPN_3714	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPN_3714	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_3715	SSF52794	PTS system IIB component-like
YPN_3715	SSF55804	Phoshotransferase/anion transport protein
YPN_3717	SSF109604	HD-domain/PDEase-like
YPN_3718	SSF55681	Class II aaRS and biotin synthetases
YPN_3719	SSF48150	DNA-glycosylase
YPN_3720	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPN_3721	SSF103088	OmpA-like
YPN_3722	SSF46785	"Winged helix" DNA-binding domain
YPN_3723	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_3723	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
YPN_3724	SSF51445	(Trans)glycosidases
YPN_3726	SSF53383	PLP-dependent transferases
YPN_3727	SSF116726	TrkA C-terminal domain-like
YPN_3728	SSF49764	HSP20-like chaperones
YPN_3729	SSF49764	HSP20-like chaperones
YPN_3731	SSF82171	DPP6 N-terminal domain-like
YPN_3733	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
YPN_3734	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_3735	SSF46689	Homeodomain-like
YPN_3735	SSF48295	TrpR-like
YPN_3736	SSF53098	Ribonuclease H-like
YPN_3737	SSF51730	FAD-linked oxidoreductase
YPN_3738	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_3738	SSF53633	Carbamate kinase-like
YPN_3738	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPN_3739	SSF53383	PLP-dependent transferases
YPN_3740	SSF53383	PLP-dependent transferases
YPN_3741	SSF47598	Ribbon-helix-helix
YPN_3743	SSF143800	L28p-like
YPN_3744	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3745	SSF47413	lambda repressor-like DNA-binding domains
YPN_3745	SSF53822	Periplasmic binding protein-like I
YPN_3746	SSF110997	Sporulation related repeat
YPN_3747	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
YPN_3748	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3750	SSF89562	RraA-like
YPN_3753	SSF51230	Single hybrid motif
YPN_3754	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3754	SSF90123	ABC transporter transmembrane region
YPN_3755	SSF143422	Transposase IS200-like
YPN_3757	SSF81338	Aquaporin-like
YPN_3758	SSF53067	Actin-like ATPase domain
YPN_3759	SSF56655	Carbohydrate phosphatase
YPN_3760	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
YPN_3760	SSF63380	Riboflavin synthase domain-like
YPN_3763	SSF51351	Triosephosphate isomerase (TIM)
YPN_3764	SSF46785	"Winged helix" DNA-binding domain
YPN_3764	SSF53850	Periplasmic binding protein-like II
YPN_3765	SSF102588	LmbE-like
YPN_3766	SSF89562	RraA-like
YPN_3768	SSF53850	Periplasmic binding protein-like II
YPN_3769	SSF53850	Periplasmic binding protein-like II
YPN_3770	SSF53784	Phosphofructokinase
YPN_3771	SSF160240	Cation efflux protein cytoplasmic domain-like
YPN_3771	SSF161111	Cation efflux protein transmembrane domain-like
YPN_3775	SSF56349	DNA breaking-rejoining enzymes
YPN_3777	SSF52172	CheY-like
YPN_3778	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPN_3778	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_3779	SSF46689	Homeodomain-like
YPN_3779	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
YPN_3779	SSF53155	Methylated DNA-protein cysteine methyltransferase domain
YPN_3779	SSF57884	Ada DNA repair protein, N-terminal domain (N-Ada 10)
YPN_3780	SSF75217	alpha/beta knot
YPN_3781	SSF51161	Trimeric LpxA-like enzymes
YPN_3782	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPN_3782	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_3783	SSF54611	SecB-like
YPN_3784	SSF52833	Thioredoxin-like
YPN_3785	SSF52821	Rhodanese/Cell cycle control phosphatase
YPN_3786	SSF53649	Alkaline phosphatase-like
YPN_3786	SSF64158	2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
YPN_3787	SSF51261	Duplicated hybrid motif
YPN_3788	SSF88713	Glycoside hydrolase/deacetylase
YPN_3789	SSF88713	Glycoside hydrolase/deacetylase
YPN_3790	SSF50129	GroES-like
YPN_3790	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_3791	SSF53383	PLP-dependent transferases
YPN_3792	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_3793	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPN_3794	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPN_3795	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPN_3796	SSF53448	Nucleotide-diphospho-sugar transferases
YPN_3797	SSF52374	Nucleotidylyl transferase
YPN_3798	SSF46946	S13-like H2TH domain
YPN_3798	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
YPN_3798	SSF81624	N-terminal domain of MutM-like DNA repair proteins
YPN_3799	SSF57829	Zn-binding ribosomal proteins
YPN_3800	SSF143800	L28p-like
YPN_3801	SSF47781	RuvA domain 2-like
YPN_3802	SSF102645	CoaB-like
YPN_3802	SSF52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
YPN_3803	SSF51283	dUTPase-like
YPN_3804	SSF46689	Homeodomain-like
YPN_3804	SSF48498	Tetracyclin repressor-like, C-terminal domain
YPN_3805	SSF53271	PRTase-like
YPN_3806	SSF54211	Ribosomal protein S5 domain 2-like
YPN_3806	SSF55666	Ribonuclease PH domain 2-like
YPN_3809	SSF47781	RuvA domain 2-like
YPN_3809	SSF50249	Nucleic acid-binding proteins
YPN_3809	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
YPN_3810	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3811	SSF63562	RPB6/omega subunit-like
YPN_3812	SSF109604	HD-domain/PDEase-like
YPN_3812	SSF55021	ACT-like
YPN_3812	SSF81271	TGS-like
YPN_3812	SSF81301	Nucleotidyltransferase
YPN_3813	SSF75217	alpha/beta knot
YPN_3814	SSF50249	Nucleic acid-binding proteins
YPN_3814	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3818	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
YPN_3818	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPN_3819	SSF46689	Homeodomain-like
YPN_3819	SSF53098	Ribonuclease H-like
YPN_3820	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3821	SSF51161	Trimeric LpxA-like enzymes
YPN_3822	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_3822	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
YPN_3823	SSF55821	YrdC/RibB
YPN_3824	SSF57783	Zinc beta-ribbon
YPN_3826	SSF102405	MCP/YpsA-like
YPN_3827	SSF56420	Peptide deformylase
YPN_3828	SSF50486	FMT C-terminal domain-like
YPN_3828	SSF53328	Formyltransferase
YPN_3829	SSF48013	NusB-like
YPN_3829	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_3830	SSF116726	TrkA C-terminal domain-like
YPN_3830	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_3831	SSF81330	Gated mechanosensitive channel
YPN_3833	SSF46955	Putative DNA-binding domain
YPN_3834	SSF64263	Prokaryotic ribosomal protein L17
YPN_3835	SSF47789	C-terminal domain of RNA polymerase alpha subunit
YPN_3835	SSF55257	RBP11-like subunits of RNA polymerase
YPN_3835	SSF56553	Insert subdomain of RNA polymerase alpha subunit
YPN_3836	SSF55174	Alpha-L RNA-binding motif
YPN_3837	SSF53137	Translational machinery components
YPN_3838	SSF46946	S13-like H2TH domain
YPN_3839	SSF103491	Preprotein translocase SecY subunit
YPN_3840	SSF52080	Ribosomal proteins L15p and L18e
YPN_3841	SSF55129	Ribosomal protein L30p/L7e
YPN_3842	SSF54211	Ribosomal protein S5 domain 2-like
YPN_3842	SSF54768	dsRNA-binding domain-like
YPN_3843	SSF53137	Translational machinery components
YPN_3844	SSF56053	Ribosomal protein L6
YPN_3845	SSF56047	Ribosomal protein S8
YPN_3846	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
YPN_3847	SSF55282	RL5-like
YPN_3848	SSF50104	Translation proteins SH3-like domain
YPN_3849	SSF50193	Ribosomal protein L14
YPN_3850	SSF50249	Nucleic acid-binding proteins
YPN_3851	SSF46561	Ribosomal protein L29 (L29p)
YPN_3852	SSF54686	Ribosomal protein L16p/L10e
YPN_3853	SSF54814	Prokaryotic type KH domain (KH-domain type II)
YPN_3853	SSF54821	Ribosomal protein S3 C-terminal domain
YPN_3854	SSF54843	Ribosomal protein L22
YPN_3855	SSF54570	Ribosomal protein S19
YPN_3856	SSF50104	Translation proteins SH3-like domain
YPN_3856	SSF50249	Nucleic acid-binding proteins
YPN_3857	SSF54189	Ribosomal proteins S24e, L23 and L15e
YPN_3858	SSF52166	Ribosomal protein L4
YPN_3859	SSF50447	Translation proteins
YPN_3860	SSF54999	Ribosomal protein S10
YPN_3861	SSF47240	Ferritin-like
YPN_3863	SSF143422	Transposase IS200-like
YPN_3864	SSF50447	Translation proteins
YPN_3864	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
YPN_3864	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3865	SSF50447	Translation proteins
YPN_3865	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3865	SSF54211	Ribosomal protein S5 domain 2-like
YPN_3865	SSF54980	EF-G C-terminal domain-like
YPN_3866	SSF47973	Ribosomal protein S7
YPN_3867	SSF50249	Nucleic acid-binding proteins
YPN_3868	SSF75169	DsrEFH-like
YPN_3869	SSF75169	DsrEFH-like
YPN_3870	SSF75169	DsrEFH-like
YPN_3872	SSF54534	FKBP-like
YPN_3874	SSF54534	FKBP-like
YPN_3876	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_3877	SSF52218	Flavoproteins
YPN_3878	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3879	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3880	SSF53448	Nucleotide-diphospho-sugar transferases
YPN_3881	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPN_3882	SSF51197	Clavaminate synthase-like
YPN_3883	SSF161098	MetI-like
YPN_3884	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3885	SSF53850	Periplasmic binding protein-like II
YPN_3887	SSF53474	alpha/beta-Hydrolases
YPN_3888	SSF118001	YehU-like
YPN_3889	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3891	SSF82784	OsmC-like
YPN_3892	SSF46785	"Winged helix" DNA-binding domain
YPN_3892	SSF51206	cAMP-binding domain-like
YPN_3894	SSF53383	PLP-dependent transferases
YPN_3895	SSF52317	Class I glutamine amidotransferase-like
YPN_3896	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3897	SSF50891	Cyclophilin-like
YPN_3898	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_3898	SSF56327	LDH C-terminal domain-like
YPN_3899	SSF47413	lambda repressor-like DNA-binding domains
YPN_3899	SSF53822	Periplasmic binding protein-like I
YPN_3900	SSF56935	Porins
YPN_3901	SSF103473	MFS general substrate transporter
YPN_3902	SSF51338	Composite domain of metallo-dependent hydrolases
YPN_3902	SSF51556	Metallo-dependent hydrolases
YPN_3903	SSF51905	FAD/NAD(P)-binding domain
YPN_3903	SSF55124	Nitrite/Sulfite reductase N-terminal domain-like
YPN_3903	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
YPN_3904	SSF50022	ISP domain
YPN_3907	SSF51735	NAD(P)-binding Rossmann-fold domains
YPN_3907	SSF53790	Tetrapyrrole methylase
YPN_3907	SSF75615	Siroheme synthase middle domains-like
YPN_3908	SSF52374	Nucleotidylyl transferase
YPN_3909	SSF56784	HAD-like
YPN_3910	SSF51366	Ribulose-phoshate binding barrel
YPN_3911	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_3912	SSF110997	Sporulation related repeat
YPN_3913	SSF56796	Dehydroquinate synthase-like
YPN_3914	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3920	SSF53067	Actin-like ATPase domain
YPN_3921	SSF53955	Lysozyme-like
YPN_3921	SSF56601	beta-lactamase/transpeptidase-like
YPN_3922	SSF55811	Nudix
YPN_3924	SSF56784	HAD-like
YPN_3925	SSF55174	Alpha-L RNA-binding motif
YPN_3926	SSF118352	HSP33 redox switch-like
YPN_3926	SSF64397	Hsp33 domain
YPN_3927	SSF53795	PEP carboxykinase-like
YPN_3927	SSF68923	PEP carboxykinase N-terminal domain
YPN_3928	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPN_3928	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_3929	SSF46894	C-terminal effector domain of the bipartite response regulators
YPN_3929	SSF52172	CheY-like
YPN_3930	SSF46557	GreA transcript cleavage protein, N-terminal domain
YPN_3930	SSF54534	FKBP-like
YPN_3931	SSF158832	Tex N-terminal region-like
YPN_3931	SSF47781	RuvA domain 2-like
YPN_3931	SSF50249	Nucleic acid-binding proteins
YPN_3931	SSF53098	Ribonuclease H-like
YPN_3932	SSF50037	C-terminal domain of transcriptional repressors
YPN_3933	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3934	SSF46785	"Winged helix" DNA-binding domain
YPN_3935	SSF159871	YdgH-like
YPN_3936	SSF53474	alpha/beta-Hydrolases
YPN_3937	SSF53271	PRTase-like
YPN_3938	SSF117916	Fe-S cluster assembly (FSCA) domain-like
YPN_3938	SSF89360	HesB-like domain
YPN_3939	SSF51445	(Trans)glycosidases
YPN_3940	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPN_3941	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPN_3942	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3943	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3944	SSF46689	Homeodomain-like
YPN_3944	SSF53098	Ribonuclease H-like
YPN_3945	SSF46894	C-terminal effector domain of the bipartite response regulators
YPN_3945	SSF48452	TPR-like
YPN_3946	SSF52821	Rhodanese/Cell cycle control phosphatase
YPN_3947	SSF144091	Rhomboid-like
YPN_3948	SSF100950	NagB/RpiA/CoA transferase-like
YPN_3948	SSF46785	"Winged helix" DNA-binding domain
YPN_3949	SSF46689	Homeodomain-like
YPN_3949	SSF48295	TrpR-like
YPN_3950	SSF53098	Ribonuclease H-like
YPN_3951	SSF56784	HAD-like
YPN_3952	SSF54211	Ribosomal protein S5 domain 2-like
YPN_3952	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPN_3952	SSF56719	Type II DNA topoisomerase
YPN_3953	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3954	SSF55979	DNA clamp
YPN_3955	SSF48295	TrpR-like
YPN_3955	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3957	SSF54211	Ribosomal protein S5 domain 2-like
YPN_3960	SSF116878	TrmE connector domain
YPN_3960	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3965	SSF56784	HAD-like
YPN_3966	SSF161098	MetI-like
YPN_3967	SSF161098	MetI-like
YPN_3968	SSF53850	Periplasmic binding protein-like II
YPN_3970	SSF109755	PhoU-like
YPN_3971	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3972	SSF161098	MetI-like
YPN_3973	SSF161098	MetI-like
YPN_3974	SSF53850	Periplasmic binding protein-like II
YPN_3975	SSF53697	SIS domain
YPN_3975	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
YPN_3976	SSF51161	Trimeric LpxA-like enzymes
YPN_3976	SSF53448	Nucleotide-diphospho-sugar transferases
YPN_3977	SSF46604	Epsilon subunit of F1F0-ATP synthase C-terminal domain
YPN_3977	SSF51344	Epsilon subunit of F1F0-ATP synthase N-terminal domain
YPN_3978	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
YPN_3978	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
YPN_3978	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3979	SSF52943	ATP synthase (F1-ATPase), gamma subunit
YPN_3980	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
YPN_3980	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
YPN_3980	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_3981	SSF47928	N-terminal domain of the delta subunit of the F1F0-ATP synthase
YPN_3982	SSF81573	F1F0 ATP synthase subunit B, membrane domain
YPN_3983	SSF81333	F1F0 ATP synthase subunit C
YPN_3984	SSF81336	F1F0 ATP synthase subunit A
YPN_3986	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_3987	SSF51905	FAD/NAD(P)-binding domain
YPN_MT0001	SSF46689	Homeodomain-like
YPN_MT0001	SSF53098	Ribonuclease H-like
YPN_MT0002	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_MT0004	SSF88874	Receptor-binding domain of short tail fibre protein gp12
YPN_MT0006	SSF49265	Fibronectin type III
YPN_MT0008	SSF102712	JAB1/MPN domain
YPN_MT0008	SSF54001	Cysteine proteinases
YPN_MT0011	SSF57997	Tropomyosin
YPN_MT0014	SSF49373	Invasin/intimin cell-adhesion fragments
YPN_MT0020	SSF49373	Invasin/intimin cell-adhesion fragments
YPN_MT0021	SSF56563	Major capsid protein gp5
YPN_MT0025	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_MT0028	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPN_MT0030	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_MT0031	SSF110849	ParB/Sulfiredoxin
YPN_MT0032	SSF110849	ParB/Sulfiredoxin
YPN_MT0033	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_MT0040	SSF143422	Transposase IS200-like
YPN_MT0041	SSF53098	Ribonuclease H-like
YPN_MT0042	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_MT0043	SSF56300	Metallo-dependent phosphatases
YPN_MT0044	SSF53850	Periplasmic binding protein-like II
YPN_MT0052	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_MT0054	SSF47807	5' to 3' exonuclease, C-terminal subdomain
YPN_MT0054	SSF88723	PIN domain-like
YPN_MT0059	SSF52141	Uracil-DNA glycosylase-like
YPN_MT0060	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_MT0061	SSF53300	vWA-like
YPN_MT0063	SSF56349	DNA breaking-rejoining enzymes
YPN_MT0065	SSF141729	FimD N-terminal domain-like
YPN_MT0066	SSF49354	PapD-like
YPN_MT0066	SSF49584	Periplasmic chaperone C-domain
YPN_MT0069	SSF50249	Nucleic acid-binding proteins
YPN_MT0069	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
YPN_MT0070	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_MT0071	SSF46689	Homeodomain-like
YPN_MT0071	SSF53098	Ribonuclease H-like
YPN_MT0078	SSF56672	DNA/RNA polymerases
YPN_MT0079	SSF56024	Phospholipase D/nuclease
YPN_MT0080	SSF56024	Phospholipase D/nuclease
YPN_MT0083	SSF53041	Resolvase-like
YPN_MT0084	SSF143120	YefM-like
YPN_MT0085	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_MT0087	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_MT0088	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPN_MT0093	SSF54786	YcfA/nrd intein domain
YPN_MT0094	SSF109709	KorB DNA-binding domain-like
YPN_MT0094	SSF110849	ParB/Sulfiredoxin
YPN_MT0096	SSF49373	Invasin/intimin cell-adhesion fragments
YPN_MT0100	SSF49401	Bacterial adhesins
YPN_MT0101	SSF46689	Homeodomain-like
YPN_MT0101	SSF55136	Probable bacterial effector-binding domain
YPN_PCP0001	SSF46689	Homeodomain-like
YPN_PCP0001	SSF53098	Ribonuclease H-like
YPN_PCP0002	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPN_PCP0003	SSF53955	Lysozyme-like
YPN_PCP0005	SSF69917	OMPT-like
YPN_PCP0006	SSF47413	lambda repressor-like DNA-binding domains
YPN_PCP0008	SSF47380	ROP protein
YPN_PCP0009	SSF47380	ROP protein