locus-tag class description CH63_1 PF02075 Crossover junction endodeoxyribonuclease RuvC CH63_10 PF01418 Helix-turn-helix domain, rpiR family CH63_10 PF01380 SIS domain CH63_100 PF01641 SelR domain CH63_1001 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CH63_1003 PF00929 Exonuclease CH63_1004 PF00075 RNase H CH63_1005 PF08241 Methyltransferase domain CH63_1006 PF16123 Hydroxyacylglutathione hydrolase C-terminus CH63_1006 PF00753 Metallo-beta-lactamase superfamily CH63_1007 PF01476 LysM domain CH63_1007 PF01464 Transglycosylase SLT domain CH63_1008 PF03372 Endonuclease/Exonuclease/phosphatase family CH63_101 PF07023 Protein of unknown function (DUF1315) CH63_1010 PF00248 Aldo/keto reductase family CH63_1017 PF09383 NIL domain CH63_1017 PF00005 ABC transporter CH63_1018 PF00528 Binding-protein-dependent transport system inner membrane component CH63_1019 PF03180 NLPA lipoprotein CH63_102 PF00857 Isochorismatase family CH63_1020 PF16358 RcsF lipoprotein CH63_1021 PF18389 TrmO C-terminal domain CH63_1021 PF01980 tRNA-methyltransferase O CH63_1022 PF03129 Anticodon binding domain CH63_1022 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH63_1022 PF04073 Aminoacyl-tRNA editing domain CH63_1023 PF17185 NlpE C-terminal OB domain CH63_1023 PF04170 NlpE N-terminal domain CH63_1024 PF00472 RF-1 domain CH63_1025 PF07152 YaeQ protein CH63_1026 PF06786 Uncharacterised protein family (UPF0253) CH63_1027 PF07073 Modulator of Rho-dependent transcription termination (ROF) CH63_1028 PF00034 Cytochrome c CH63_1029 PF11734 TilS substrate C-terminal domain CH63_1029 PF09179 TilS substrate binding domain CH63_1029 PF01171 PP-loop family CH63_103 PF00710 Asparaginase, N-terminal CH63_103 PF17763 Glutaminase/Asparaginase C-terminal domain CH63_1030 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH63_1031 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CH63_1032 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH63_1032 PF02811 PHP domain CH63_1032 PF14579 Helix-hairpin-helix motif CH63_1032 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH63_1032 PF01336 OB-fold nucleic acid binding domain CH63_1033 PF01351 Ribonuclease HII CH63_1034 PF02684 Lipid-A-disaccharide synthetase CH63_1035 PF00132 Bacterial transferase hexapeptide (six repeats) CH63_1035 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CH63_1036 PF07977 FabA-like domain CH63_1037 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CH63_1037 PF00132 Bacterial transferase hexapeptide (six repeats) CH63_1038 PF03938 Outer membrane protein (OmpH-like) CH63_1039 PF01103 Surface antigen CH63_1039 PF07244 Surface antigen variable number repeat CH63_104 PF01343 Peptidase family S49 CH63_1040 PF02163 Peptidase family M50 CH63_1040 PF17820 PDZ domain CH63_1042 PF01255 Putative undecaprenyl diphosphate synthase CH63_1043 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CH63_1043 PF13288 DXP reductoisomerase C-terminal domain CH63_1043 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CH63_1044 PF01765 Ribosome recycling factor CH63_1045 PF00696 Amino acid kinase family CH63_1046 PF00889 Elongation factor TS CH63_1047 PF00318 Ribosomal protein S2 CH63_1048 PF00557 Metallopeptidase family M24 CH63_1049 PF08335 GlnD PII-uridylyltransferase CH63_1049 PF01966 HD domain CH63_1049 PF01909 Nucleotidyltransferase domain CH63_1049 PF01842 ACT domain CH63_105 PF00881 Nitroreductase family CH63_1050 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CH63_1050 PF14602 Hexapeptide repeat of succinyl-transferase CH63_1050 PF00132 Bacterial transferase hexapeptide (six repeats) CH63_1051 PF01797 Transposase IS200 like CH63_1052 PF11944 Protein of unknown function (DUF3461) CH63_1053 PF00258 Flavodoxin CH63_1054 PF00849 RNA pseudouridylate synthase CH63_1055 PF04287 tRNA pseudouridine synthase C CH63_1056 PF01797 Transposase IS200 like CH63_1057 PF07348 Syd protein (SUKH-2) CH63_1058 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CH63_1058 PF14489 QueF-like protein CH63_1059 PF03641 Possible lysine decarboxylase CH63_1059 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CH63_1059 PF11892 Domain of unknown function (DUF3412) CH63_106 PF02769 AIR synthase related protein, C-terminal domain CH63_106 PF00586 AIR synthase related protein, N-terminal domain CH63_1060 PF01367 5'-3' exonuclease, C-terminal SAM fold CH63_1060 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH63_1061 PF18125 RlmM ferredoxin-like domain CH63_1061 PF01728 FtsJ-like methyltransferase CH63_1062 PF04241 Protein of unknown function (DUF423) CH63_1063 PF03466 LysR substrate binding domain CH63_1063 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_1065 PF00266 Aminotransferase class-V CH63_1066 PF02657 Fe-S metabolism associated domain CH63_1067 PF00899 ThiF family CH63_1068 PF06725 3D domain CH63_1068 PF03562 MltA specific insert domain CH63_107 PF01131 DNA topoisomerase CH63_107 PF01751 Toprim domain CH63_1071 PF11741 AMIN domain CH63_1071 PF01520 N-acetylmuramoyl-L-alanine amidase CH63_1072 PF00696 Amino acid kinase family CH63_1072 PF00583 Acetyltransferase (GNAT) family CH63_1073 PF13538 UvrD-like helicase C-terminal domain CH63_1074 PF13361 UvrD-like helicase C-terminal domain CH63_1074 PF12705 PD-(D/E)XK nuclease superfamily CH63_1074 PF00580 UvrD/REP helicase N-terminal domain CH63_1075 PF00675 Insulinase (Peptidase family M16) CH63_1075 PF16187 Middle or third domain of peptidase_M16 CH63_1075 PF05193 Peptidase M16 inactive domain CH63_1076 PF17946 RecC C-terminal domain CH63_108 PF07383 Protein of unknown function (DUF1496) CH63_1082 PF00303 Thymidylate synthase CH63_1083 PF01790 Prolipoprotein diacylglyceryl transferase CH63_1084 PF01590 GAF domain CH63_1084 PF00391 PEP-utilising enzyme, mobile domain CH63_1084 PF05524 PEP-utilising enzyme, N-terminal CH63_1084 PF02896 PEP-utilising enzyme, TIM barrel domain CH63_1085 PF01590 GAF domain CH63_1085 PF00391 PEP-utilising enzyme, mobile domain CH63_1085 PF05524 PEP-utilising enzyme, N-terminal CH63_1085 PF02896 PEP-utilising enzyme, TIM barrel domain CH63_1086 PF00293 NUDIX domain CH63_1087 PF02976 DNA mismatch repair enzyme MutH CH63_1088 PF00248 Aldo/keto reductase family CH63_109 PF00293 NUDIX domain CH63_1091 PF07690 Major Facilitator Superfamily CH63_1092 PF01553 Acyltransferase CH63_1092 PF00501 AMP-binding enzyme CH63_1092 PF13193 AMP-binding enzyme C-terminal domain CH63_1093 PF01553 Acyltransferase CH63_1093 PF13193 AMP-binding enzyme C-terminal domain CH63_1093 PF00501 AMP-binding enzyme CH63_1094 PF01568 Molydopterin dinucleotide binding domain CH63_1094 PF00384 Molybdopterin oxidoreductase CH63_1095 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CH63_1095 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH63_1096 PF00356 Bacterial regulatory proteins, lacI family CH63_1097 PF07690 Major Facilitator Superfamily CH63_1098 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_1098 PF03466 LysR substrate binding domain CH63_1099 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_1099 PF03466 LysR substrate binding domain CH63_11 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CH63_11 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CH63_110 PF03372 Endonuclease/Exonuclease/phosphatase family CH63_1107 PF01478 Type IV leader peptidase family CH63_1107 PF06750 Bacterial Peptidase A24 N-terminal domain CH63_111 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_111 PF03466 LysR substrate binding domain CH63_1114 PF07963 Prokaryotic N-terminal methylation motif CH63_1114 PF08334 Type II secretion system (T2SS), protein G CH63_1115 PF00482 Type II secretion system (T2SS), protein F CH63_1118 PF03958 Bacterial type II/III secretion system short domain CH63_1118 PF00263 Bacterial type II and III secretion system protein CH63_1121 PF00484 Carbonic anhydrase CH63_1125 PF09093 Lyase, catalytic CH63_1125 PF09092 Lyase, N terminal CH63_1125 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain CH63_1125 PF02278 Polysaccharide lyase family 8, super-sandwich domain CH63_1126 PF01695 IstB-like ATP binding protein CH63_1127 PF02796 Helix-turn-helix domain of resolvase CH63_1127 PF00665 Integrase core domain CH63_1129 PF00884 Sulfatase CH63_1130 PF00455 DeoR C terminal sensor domain CH63_1130 PF08220 DeoR-like helix-turn-helix domain CH63_1131 PF08013 Tagatose 6 phosphate kinase CH63_1132 PF01380 SIS domain CH63_1133 PF03830 PTS system sorbose subfamily IIB component CH63_1134 PF03609 PTS system sorbose-specific iic component CH63_1135 PF03613 PTS system mannose/fructose/sorbose family IID component CH63_1136 PF03610 PTS system fructose IIA component CH63_1137 PF01979 Amidohydrolase family CH63_114 PF00551 Formyl transferase CH63_114 PF01842 ACT domain CH63_1141 PF13186 Iron-sulfur cluster-binding domain CH63_1141 PF04055 Radical SAM superfamily CH63_1142 PF00884 Sulfatase CH63_1144 PF01116 Fructose-bisphosphate aldolase class-II CH63_1147 PF00356 Bacterial regulatory proteins, lacI family CH63_1148 PF07690 Major Facilitator Superfamily CH63_1149 PF01055 Glycosyl hydrolases family 31 CH63_1149 PF16338 Domain of unknown function (DUF4968) CH63_1149 PF17137 Domain of unknown function (DUF5110) CH63_1149 PF13802 Galactose mutarotase-like CH63_115 PF00872 Transposase, Mutator family CH63_1150 PF00356 Bacterial regulatory proteins, lacI family CH63_1151 PF02264 LamB porin CH63_1152 PF02378 Phosphotransferase system, EIIC CH63_1152 PF00367 phosphotransferase system, EIIB CH63_1153 PF08532 Beta-galactosidase trimerisation domain CH63_1153 PF08533 Beta-galactosidase C-terminal domain CH63_1153 PF02449 Beta-galactosidase CH63_1154 PF07745 Glycosyl hydrolase family 53 CH63_1155 PF00528 Binding-protein-dependent transport system inner membrane component CH63_1156 PF00528 Binding-protein-dependent transport system inner membrane component CH63_1157 PF13416 Bacterial extracellular solute-binding protein CH63_1158 PF17912 MalK OB fold domain CH63_1158 PF00005 ABC transporter CH63_1159 PF00005 ABC transporter CH63_116 PF02810 SEC-C motif CH63_1160 PF02653 Branched-chain amino acid transport system / permease component CH63_1161 PF13407 Periplasmic binding protein domain CH63_1163 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family CH63_1164 PF03551 Transcriptional regulator PadR-like family CH63_117 PF00072 Response regulator receiver domain CH63_118 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH63_118 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH63_118 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH63_1181 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA CH63_1182 PF15723 Motility quorum-sensing regulator, toxin of MqsA CH63_1186 PF13356 Arm DNA-binding domain CH63_1186 PF14659 Phage integrase, N-terminal SAM-like domain CH63_1186 PF00589 Phage integrase family CH63_1188 PF00152 tRNA synthetases class II (D, K and N) CH63_1188 PF01336 OB-fold nucleic acid binding domain CH63_1189 PF03462 PCRF domain CH63_1189 PF00472 RF-1 domain CH63_119 PF00816 H-NS histone family CH63_1190 PF17768 RecJ OB domain CH63_1190 PF02272 DHHA1 domain CH63_1190 PF01368 DHH family CH63_1191 PF13098 Thioredoxin-like domain CH63_1191 PF10411 Disulfide bond isomerase protein N-terminus CH63_1192 PF02899 Phage integrase, N-terminal SAM-like domain CH63_1192 PF00589 Phage integrase family CH63_1193 PF00258 Flavodoxin CH63_1194 PF06123 Inner membrane protein CreD CH63_1195 PF00672 HAMP domain CH63_1195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH63_1195 PF00512 His Kinase A (phospho-acceptor) domain CH63_1196 PF00072 Response regulator receiver domain CH63_1196 PF00486 Transcriptional regulatory protein, C terminal CH63_1197 PF03937 Flavinator of succinate dehydrogenase CH63_1198 PF01571 Aminomethyltransferase folate-binding domain CH63_120 PF00265 Thymidine kinase CH63_1200 PF03006 Haemolysin-III related CH63_1202 PF05662 Coiled stalk of trimeric autotransporter adhesin CH63_1202 PF13018 Extended Signal Peptide of Type V secretion system CH63_1202 PF03895 YadA-like membrane anchor domain CH63_1202 PF05658 Head domain of trimeric autotransporter adhesin CH63_1205 PF02347 Glycine cleavage system P-protein CH63_1206 PF01597 Glycine cleavage H-protein CH63_1207 PF08669 Glycine cleavage T-protein C-terminal barrel domain CH63_1207 PF01571 Aminomethyltransferase folate-binding domain CH63_1208 PF01494 FAD binding domain CH63_1209 PF01494 FAD binding domain CH63_121 PF01695 IstB-like ATP binding protein CH63_1210 PF00557 Metallopeptidase family M24 CH63_1210 PF05195 Aminopeptidase P, N-terminal domain CH63_1211 PF03695 Uncharacterised protein family (UPF0149) CH63_1212 PF05164 Cell division protein ZapA CH63_1213 PF01812 5-formyltetrahydrofolate cyclo-ligase family CH63_1214 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH63_1214 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH63_1214 PF01842 ACT domain CH63_1215 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH63_1216 PF03466 LysR substrate binding domain CH63_1216 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_1217 PF04402 Protein of unknown function (DUF541) CH63_1218 PF01810 LysE type translocator CH63_1219 PF05552 Conserved TM helix CH63_1219 PF00924 Mechanosensitive ion channel CH63_122 PF00665 Integrase core domain CH63_122 PF02796 Helix-turn-helix domain of resolvase CH63_1220 PF01116 Fructose-bisphosphate aldolase class-II CH63_1221 PF00162 Phosphoglycerate kinase CH63_1222 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH63_1222 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH63_1224 PF00456 Transketolase, thiamine diphosphate binding domain CH63_1224 PF02779 Transketolase, pyrimidine binding domain CH63_1224 PF02780 Transketolase, C-terminal domain CH63_1225 PF01435 Peptidase family M48 CH63_1226 PF00355 Rieske [2Fe-2S] domain CH63_1227 PF17944 Arginine decarboxylase C-terminal helical extension CH63_1227 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH63_1227 PF17810 Arginine decarboxylase helical bundle domain CH63_1229 PF02772 S-adenosylmethionine synthetase, central domain CH63_1229 PF02773 S-adenosylmethionine synthetase, C-terminal domain CH63_1229 PF00438 S-adenosylmethionine synthetase, N-terminal domain CH63_1230 PF17283 SprT-like zinc ribbon domain CH63_1230 PF10263 SprT-like family CH63_1231 PF04231 Endonuclease I CH63_1232 PF04452 RNA methyltransferase CH63_1233 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CH63_1233 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CH63_1234 PF02622 Uncharacterized ACR, COG1678 CH63_1235 PF03652 Holliday junction resolvase CH63_1236 PF00795 Carbon-nitrogen hydrolase CH63_1237 PF04371 Porphyromonas-type peptidyl-arginine deiminase CH63_1238 PF00437 Type II/IV secretion system protein CH63_1239 PF01168 Alanine racemase, N-terminal domain CH63_124 PF07351 Protein of unknown function (DUF1480) CH63_1240 PF14748 Pyrroline-5-carboxylate reductase dimerisation CH63_1240 PF03807 NADP oxidoreductase coenzyme F420-dependent CH63_1241 PF02325 YGGT family CH63_1242 PF02594 Uncharacterised ACR, YggU family COG1872 CH63_1243 PF01725 Ham1 family CH63_1244 PF06969 HemN C-terminal domain CH63_1244 PF04055 Radical SAM superfamily CH63_1245 PF12146 Serine aminopeptidase, S33 CH63_1245 PF16671 Actin cross-linking domain CH63_1245 PF11647 Membrane Localization Domain CH63_1245 PF11713 Peptidase C80 family CH63_1245 PF07634 RtxA repeat CH63_1246 PF11101 Protein of unknown function (DUF2884) CH63_1247 PF11101 Protein of unknown function (DUF2884) CH63_1248 PF04960 Glutaminase CH63_1249 PF04320 Protein with unknown function (DUF469) CH63_1250 PF02390 Putative methyltransferase CH63_1251 PF10576 Iron-sulfur binding domain of endonuclease III CH63_1251 PF00730 HhH-GPD superfamily base excision DNA repair protein CH63_1251 PF00633 Helix-hairpin-helix motif CH63_1251 PF14815 NUDIX domain CH63_1252 PF04362 Bacterial Fe(2+) trafficking CH63_1253 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CH63_1253 PF01464 Transglycosylase SLT domain CH63_1255 PF07715 TonB-dependent Receptor Plug Domain CH63_1256 PF02653 Branched-chain amino acid transport system / permease component CH63_1257 PF00005 ABC transporter CH63_1258 PF13407 Periplasmic binding protein domain CH63_1259 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH63_1259 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH63_1259 PF01276 Orn/Lys/Arg decarboxylase, major domain CH63_1261 PF02899 Phage integrase, N-terminal SAM-like domain CH63_1261 PF00589 Phage integrase family CH63_1263 PF03400 IS1 transposase CH63_1264 PF12759 InsA C-terminal domain CH63_1264 PF03811 InsA N-terminal domain CH63_1268 PF12759 InsA C-terminal domain CH63_1268 PF03811 InsA N-terminal domain CH63_127 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH63_127 PF02753 Pili assembly chaperone PapD, C-terminal domain CH63_1271 PF07724 AAA domain (Cdc48 subfamily) CH63_1271 PF10431 C-terminal, D2-small domain, of ClpB protein CH63_1271 PF00004 ATPase family associated with various cellular activities (AAA) CH63_1271 PF17871 AAA lid domain CH63_1273 PF00691 OmpA family CH63_1273 PF05736 OprF membrane domain CH63_1281 PF03811 InsA N-terminal domain CH63_1281 PF12759 InsA C-terminal domain CH63_1283 PF02517 CPBP intramembrane metalloprotease CH63_1285 PF03472 Autoinducer binding domain CH63_1285 PF00196 Bacterial regulatory proteins, luxR family CH63_1286 PF00765 Autoinducer synthase CH63_1290 PF04183 IucA / IucC family CH63_1290 PF06276 Ferric iron reductase FhuF-like transporter CH63_1291 PF06276 Ferric iron reductase FhuF-like transporter CH63_1291 PF04183 IucA / IucC family CH63_1293 PF06276 Ferric iron reductase FhuF-like transporter CH63_1293 PF04183 IucA / IucC family CH63_1294 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CH63_1295 PF00593 TonB dependent receptor CH63_1295 PF07715 TonB-dependent Receptor Plug Domain CH63_1299 PF13276 HTH-like domain CH63_1299 PF00665 Integrase core domain CH63_1299 PF13333 Integrase core domain CH63_13 PF01081 KDPG and KHG aldolase CH63_1300 PF00356 Bacterial regulatory proteins, lacI family CH63_1301 PF00939 Sodium:sulfate symporter transmembrane region CH63_1304 PF03527 RHS protein CH63_1304 PF05593 RHS Repeat CH63_1306 PF04717 Type VI secretion system, phage-baseplate injector CH63_1307 PF12951 Passenger-associated-transport-repeat CH63_1308 PF12951 Passenger-associated-transport-repeat CH63_1311 PF02447 GntP family permease CH63_1315 PF00005 ABC transporter CH63_1315 PF00664 ABC transporter transmembrane region CH63_1316 PF08021 Siderophore-interacting FAD-binding domain CH63_1316 PF00005 ABC transporter CH63_1316 PF00664 ABC transporter transmembrane region CH63_1316 PF04954 Siderophore-interacting protein CH63_1318 PF00975 Thioesterase domain CH63_1322 PF08242 Methyltransferase domain CH63_1322 PF00501 AMP-binding enzyme CH63_1322 PF00550 Phosphopantetheine attachment site CH63_1322 PF00668 Condensation domain CH63_1323 PF00501 AMP-binding enzyme CH63_1323 PF00668 Condensation domain CH63_1323 PF08242 Methyltransferase domain CH63_1323 PF00550 Phosphopantetheine attachment site CH63_1326 PF00668 Condensation domain CH63_1326 PF08242 Methyltransferase domain CH63_1326 PF00550 Phosphopantetheine attachment site CH63_1326 PF00501 AMP-binding enzyme CH63_1327 PF01695 IstB-like ATP binding protein CH63_1328 PF02796 Helix-turn-helix domain of resolvase CH63_1328 PF00665 Integrase core domain CH63_133 PF04403 Paraquat-inducible protein A CH63_1330 PF00474 Sodium:solute symporter family CH63_1331 PF04341 Protein of unknown function, DUF485 CH63_1332 PF16177 Acetyl-coenzyme A synthetase N-terminus CH63_1332 PF00501 AMP-binding enzyme CH63_1332 PF13193 AMP-binding enzyme C-terminal domain CH63_1333 PF00375 Sodium:dicarboxylate symporter family CH63_1334 PF00196 Bacterial regulatory proteins, luxR family CH63_1334 PF00072 Response regulator receiver domain CH63_1335 PF01627 Hpt domain CH63_1335 PF00672 HAMP domain CH63_1335 PF00512 His Kinase A (phospho-acceptor) domain CH63_1335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH63_1335 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH63_1335 PF00072 Response regulator receiver domain CH63_1339 PF12833 Helix-turn-helix domain CH63_1339 PF14525 AraC-binding-like domain CH63_134 PF13185 GAF domain CH63_1343 PF01514 Secretory protein of YscJ/FliF family CH63_1346 PF00771 FHIPEP family CH63_1347 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH63_1347 PF18269 T3SS EscN ATPase C-terminal domain CH63_135 PF17516 ProQ C-terminal domain CH63_135 PF04352 ProQ/FINO family CH63_1350 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH63_1351 PF00813 FliP family CH63_1352 PF01313 Bacterial export proteins, family 3 CH63_1353 PF01311 Bacterial export proteins, family 1 CH63_1354 PF01312 FlhB HrpN YscU SpaS Family CH63_1355 PF04143 Sulphur transport CH63_1356 PF01206 Sulfurtransferase TusA CH63_1357 PF03466 LysR substrate binding domain CH63_1357 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_1358 PF03222 Tryptophan/tyrosine permease family CH63_1359 PF01053 Cys/Met metabolism PLP-dependent enzyme CH63_136 PF17804 Tail specific protease N-terminal domain CH63_136 PF11818 C-terminal domain of tail specific protease (DUF3340) CH63_136 PF03572 Peptidase family S41 CH63_136 PF00595 PDZ domain CH63_1360 PF00005 ABC transporter CH63_1361 PF01032 FecCD transport family CH63_1362 PF01497 Periplasmic binding protein CH63_1363 PF05171 Haemin-degrading HemS.ChuX domain CH63_1364 PF00593 TonB dependent receptor CH63_1364 PF07715 TonB-dependent Receptor Plug Domain CH63_1365 PF13460 NAD(P)H-binding CH63_1366 PF06228 Haem utilisation ChuX/HutX CH63_1367 PF04055 Radical SAM superfamily CH63_1371 PF11202 Phosphoribosyl transferase (PRTase) CH63_1371 PF15608 PELOTA RNA binding domain CH63_1375 PF02342 TerD domain CH63_1376 PF02342 TerD domain CH63_1377 PF05099 Tellurite resistance protein TerB CH63_1378 PF03741 Integral membrane protein TerC family CH63_1379 PF02342 TerD domain CH63_138 PF01435 Peptidase family M48 CH63_1380 PF02342 TerD domain CH63_1382 PF00577 Outer membrane usher protein CH63_1382 PF13954 PapC N-terminal domain CH63_1382 PF13953 PapC C-terminal domain CH63_1383 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH63_1386 PF08031 Berberine and berberine like CH63_1386 PF01565 FAD binding domain CH63_1387 PF12951 Passenger-associated-transport-repeat CH63_1388 PF04345 Chorismate lyase CH63_1389 PF01040 UbiA prenyltransferase family CH63_139 PF00419 Fimbrial protein CH63_1390 PF01553 Acyltransferase CH63_1391 PF01219 Prokaryotic diacylglycerol kinase CH63_1392 PF01726 LexA DNA binding domain CH63_1392 PF00717 Peptidase S24-like CH63_1393 PF01475 Ferric uptake regulator family CH63_1394 PF01207 Dihydrouridine synthase (Dus) CH63_1395 PF09583 Phage shock protein G (Phageshock_PspG) CH63_1396 PF00107 Zinc-binding dehydrogenase CH63_1396 PF08240 Alcohol dehydrogenase GroES-like domain CH63_1397 PF00772 DnaB-like helicase N terminal domain CH63_1397 PF03796 DnaB-like helicase C terminal domain CH63_1398 PF00842 Alanine racemase, C-terminal domain CH63_1398 PF01168 Alanine racemase, N-terminal domain CH63_1399 PF00155 Aminotransferase class I and II CH63_14 PF00893 Small Multidrug Resistance protein CH63_140 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH63_140 PF02753 Pili assembly chaperone PapD, C-terminal domain CH63_1400 PF04237 YjbR CH63_1401 PF17760 UvrA interaction domain CH63_1401 PF00005 ABC transporter CH63_1401 PF17755 UvrA DNA-binding domain CH63_1402 PF00436 Single-strand binding protein family CH63_1403 PF05336 L-rhamnose mutarotase CH63_1404 PF00465 Iron-containing alcohol dehydrogenase CH63_1405 PF00596 Class II Aldolase and Adducin N-terminal domain CH63_1406 PF06134 L-rhamnose isomerase (RhaA) CH63_1407 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH63_1407 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH63_141 PF13954 PapC N-terminal domain CH63_141 PF13953 PapC C-terminal domain CH63_141 PF00577 Outer membrane usher protein CH63_1410 PF02311 AraC-like ligand binding domain CH63_1410 PF12833 Helix-turn-helix domain CH63_1411 PF02311 AraC-like ligand binding domain CH63_1411 PF12833 Helix-turn-helix domain CH63_1412 PF06379 L-rhamnose-proton symport protein (RhaT) CH63_1418 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH63_1418 PF13247 4Fe-4S dicluster domain CH63_1418 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH63_1419 PF13247 4Fe-4S dicluster domain CH63_1419 PF12800 4Fe-4S binding domain CH63_1420 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH63_1420 PF00384 Molybdopterin oxidoreductase CH63_1420 PF01568 Molydopterin dinucleotide binding domain CH63_1421 PF01568 Molydopterin dinucleotide binding domain CH63_1421 PF00384 Molybdopterin oxidoreductase CH63_1421 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH63_1422 PF02683 Cytochrome C biogenesis protein transmembrane region CH63_1422 PF11412 Disulphide bond corrector protein DsbC CH63_1423 PF03091 CutA1 divalent ion tolerance protein CH63_1424 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH63_1425 PF00206 Lyase CH63_1425 PF10415 Fumarase C C-terminus CH63_1426 PF04186 FxsA cytoplasmic membrane protein CH63_1427 PF00166 Chaperonin 10 Kd subunit CH63_1428 PF00118 TCP-1/cpn60 chaperonin family CH63_1429 PF13698 Domain of unknown function (DUF4156) CH63_143 PF02753 Pili assembly chaperone PapD, C-terminal domain CH63_143 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH63_1430 PF04055 Radical SAM superfamily CH63_1431 PF01132 Elongation factor P (EF-P) OB domain CH63_1431 PF08207 Elongation factor P (EF-P) KOW-like domain CH63_1431 PF09285 Elongation factor P, C-terminal CH63_1432 PF00893 Small Multidrug Resistance protein CH63_1433 PF02313 Fumarate reductase subunit D CH63_1434 PF02300 Fumarate reductase subunit C CH63_1435 PF13085 2Fe-2S iron-sulfur cluster binding domain CH63_1435 PF13183 4Fe-4S dicluster domain CH63_1436 PF02910 Fumarate reductase flavoprotein C-term CH63_1436 PF00890 FAD binding domain CH63_1437 PF00152 tRNA synthetases class II (D, K and N) CH63_1438 PF00924 Mechanosensitive ion channel CH63_1438 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH63_1438 PF12795 Mechanosensitive ion channel porin domain CH63_1439 PF02666 Phosphatidylserine decarboxylase CH63_144 PF07690 Major Facilitator Superfamily CH63_1440 PF03193 RsgA GTPase CH63_1441 PF00929 Exonuclease CH63_1445 PF08331 Domain of unknown function (DUF1730) CH63_1446 PF01256 Carbohydrate kinase CH63_1446 PF03853 YjeF-related protein N-terminus CH63_1447 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CH63_1448 PF01520 N-acetylmuramoyl-L-alanine amidase CH63_1449 PF08676 MutL C terminal dimerisation domain CH63_1449 PF01119 DNA mismatch repair protein, C-terminal domain CH63_145 PF14583 Oligogalacturonate lyase CH63_1451 PF17209 Hfq protein CH63_1452 PF16360 GTP-binding GTPase Middle Region CH63_1452 PF13167 GTP-binding GTPase N-terminal CH63_1452 PF01926 50S ribosome-binding GTPase CH63_1453 PF01145 SPFH domain / Band 7 family CH63_1453 PF12221 Bacterial membrane protein N terminal CH63_1454 PF01145 SPFH domain / Band 7 family CH63_1455 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CH63_1456 PF00709 Adenylosuccinate synthetase CH63_1457 PF02082 Transcriptional regulator CH63_1458 PF00773 RNB domain CH63_1458 PF08206 Ribonuclease B OB domain CH63_1458 PF00575 S1 RNA binding domain CH63_1458 PF08461 Ribonuclease R winged-helix domain CH63_1458 PF17876 Cold shock domain CH63_1459 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH63_1459 PF00588 SpoU rRNA Methylase family CH63_146 PF09339 IclR helix-turn-helix domain CH63_146 PF01614 Bacterial transcriptional regulator CH63_1460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH63_1460 PF02770 Acyl-CoA dehydrogenase, middle domain CH63_1460 PF18158 Adaptive response protein AidB N-terminal domain CH63_1461 PF07338 Protein of unknown function (DUF1471) CH63_1462 PF01695 IstB-like ATP binding protein CH63_1464 PF00665 Integrase core domain CH63_1464 PF02796 Helix-turn-helix domain of resolvase CH63_1465 PF00326 Prolyl oligopeptidase family CH63_1467 PF01250 Ribosomal protein S6 CH63_1468 PF01084 Ribosomal protein S18 CH63_1469 PF01281 Ribosomal protein L9, N-terminal domain CH63_1469 PF03948 Ribosomal protein L9, C-terminal domain CH63_147 PF01510 N-acetylmuramoyl-L-alanine amidase CH63_1470 PF01797 Transposase IS200 like CH63_1472 PF08525 Opacity-associated protein A N-terminal motif CH63_1472 PF04225 Opacity-associated protein A LysM-like domain CH63_1473 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH63_1473 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH63_1474 PF04405 Domain of Unknown function (DUF542) CH63_1474 PF01814 Hemerythrin HHE cation binding domain CH63_1475 PF00149 Calcineurin-like phosphoesterase CH63_1475 PF02872 5'-nucleotidase, C-terminal domain CH63_1476 PF00459 Inositol monophosphatase family CH63_1477 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CH63_1478 PF06526 Protein of unknown function (DUF1107) CH63_1479 PF03471 Transporter associated domain CH63_1479 PF00571 CBS domain CH63_1479 PF01595 Cyclin M transmembrane N-terminal domain CH63_1480 PF01625 Peptide methionine sulfoxide reductase CH63_1481 PF01103 Surface antigen CH63_1481 PF17243 POTRA domain TamA domain 1 CH63_1481 PF07244 Surface antigen variable number repeat CH63_1484 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CH63_1485 PF00719 Inorganic pyrophosphatase CH63_1486 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CH63_1487 PF08245 Mur ligase middle domain CH63_1487 PF01225 Mur ligase family, catalytic domain CH63_1487 PF02875 Mur ligase family, glutamate ligase domain CH63_1489 PF02863 Arginine repressor, C-terminal domain CH63_1489 PF01316 Arginine repressor, DNA binding domain CH63_149 PF04307 LexA-binding, inner membrane-associated putative hydrolase CH63_1490 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CH63_1490 PF00056 lactate/malate dehydrogenase, NAD binding domain CH63_1491 PF13693 Winged helix-turn-helix DNA-binding CH63_1493 PF00348 Polyprenyl synthetase CH63_1494 PF00829 Ribosomal prokaryotic L21 protein CH63_1495 PF01016 Ribosomal L27 protein CH63_1496 PF00892 EamA-like transporter family CH63_1497 PF01926 50S ribosome-binding GTPase CH63_1497 PF01018 GTP1/OBG CH63_1498 PF00512 His Kinase A (phospho-acceptor) domain CH63_1498 PF00672 HAMP domain CH63_1498 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH63_1499 PF00072 Response regulator receiver domain CH63_1499 PF00486 Transcriptional regulatory protein, C terminal CH63_15 PF00893 Small Multidrug Resistance protein CH63_150 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH63_1500 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CH63_1501 PF01272 Transcription elongation factor, GreA/GreB, C-term CH63_1501 PF03449 Transcription elongation factor, N-terminal CH63_1502 PF01985 CRS1 / YhbY (CRM) domain CH63_1503 PF01728 FtsJ-like methyltransferase CH63_1504 PF06480 FtsH Extracellular CH63_1504 PF01434 Peptidase family M41 CH63_1504 PF00004 ATPase family associated with various cellular activities (AAA) CH63_1504 PF17862 AAA+ lid domain CH63_1505 PF00809 Pterin binding enzyme CH63_1506 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH63_1506 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH63_1506 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH63_1506 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH63_1507 PF03840 Preprotein translocase SecG subunit CH63_151 PF01547 Bacterial extracellular solute-binding protein CH63_1510 PF02576 RimP N-terminal domain CH63_1510 PF17384 RimP C-terminal SH3 domain CH63_1511 PF00575 S1 RNA binding domain CH63_1511 PF13184 NusA-like KH domain CH63_1511 PF08529 NusA N-terminal domain CH63_1512 PF00009 Elongation factor Tu GTP binding domain CH63_1512 PF08364 Bacterial translation initiation factor IF-2 associated region CH63_1512 PF11987 Translation-initiation factor 2 CH63_1512 PF03144 Elongation factor Tu domain 2 CH63_1512 PF04760 Translation initiation factor IF-2, N-terminal region CH63_1513 PF02033 Ribosome-binding factor A CH63_1514 PF09157 Pseudouridine synthase II TruB, C-terminal CH63_1514 PF16198 tRNA pseudouridylate synthase B C-terminal domain CH63_1514 PF01509 TruB family pseudouridylate synthase (N terminal domain) CH63_1515 PF00312 Ribosomal protein S15 CH63_1517 PF13276 HTH-like domain CH63_1517 PF13333 Integrase core domain CH63_1517 PF00665 Integrase core domain CH63_1518 PF13188 PAS domain CH63_1518 PF03707 Bacterial signalling protein N terminal repeat CH63_1518 PF00990 Diguanylate cyclase, GGDEF domain CH63_1518 PF00563 EAL domain CH63_152 PF03459 TOBE domain CH63_152 PF17912 MalK OB fold domain CH63_152 PF00005 ABC transporter CH63_1520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH63_1520 PF00529 HlyD membrane-fusion protein of T1SS CH63_1521 PF00873 AcrB/AcrD/AcrF family CH63_1522 PF07906 ShET2 enterotoxin, N-terminal region CH63_1524 PF03797 Autotransporter beta-domain CH63_1525 PF12468 Type III secretion system leucine rich repeat protein CH63_1525 PF14496 C-terminal novel E3 ligase, LRR-interacting CH63_1526 PF14496 C-terminal novel E3 ligase, LRR-interacting CH63_1526 PF12468 Type III secretion system leucine rich repeat protein CH63_1526 PF14496 C-terminal novel E3 ligase, LRR-interacting CH63_1526 PF12468 Type III secretion system leucine rich repeat protein CH63_1527 PF14496 C-terminal novel E3 ligase, LRR-interacting CH63_1527 PF12468 Type III secretion system leucine rich repeat protein CH63_1528 PF03806 AbgT putative transporter family CH63_1529 PF01546 Peptidase family M20/M25/M40 CH63_1529 PF07687 Peptidase dimerisation domain CH63_153 PF00528 Binding-protein-dependent transport system inner membrane component CH63_1530 PF00593 TonB dependent receptor CH63_1530 PF07715 TonB-dependent Receptor Plug Domain CH63_1531 PF00668 Condensation domain CH63_1531 PF16197 Ketoacyl-synthetase C-terminal extension CH63_1531 PF00109 Beta-ketoacyl synthase, N-terminal domain CH63_1531 PF00501 AMP-binding enzyme CH63_1531 PF13193 AMP-binding enzyme C-terminal domain CH63_1531 PF02801 Beta-ketoacyl synthase, C-terminal domain CH63_1531 PF00550 Phosphopantetheine attachment site CH63_1531 PF00202 Aminotransferase class-III CH63_1532 PF00665 Integrase core domain CH63_1532 PF02796 Helix-turn-helix domain of resolvase CH63_1533 PF01695 IstB-like ATP binding protein CH63_1534 PF01367 5'-3' exonuclease, C-terminal SAM fold CH63_1534 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH63_1535 PF13683 Integrase core domain CH63_1535 PF13276 HTH-like domain CH63_1536 PF01527 Transposase CH63_154 PF00528 Binding-protein-dependent transport system inner membrane component CH63_1543 PF02142 MGS-like domain CH63_1543 PF01808 AICARFT/IMPCHase bienzyme CH63_1544 PF02843 Phosphoribosylglycinamide synthetase, C domain CH63_1544 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CH63_1544 PF02844 Phosphoribosylglycinamide synthetase, N domain CH63_1545 PF07356 Protein of unknown function (DUF1481) CH63_1546 PF00216 Bacterial DNA-binding protein CH63_1547 PF04222 Protein of unknown function (DUF416) CH63_1548 PF04493 Endonuclease V CH63_1549 PF01208 Uroporphyrinogen decarboxylase (URO-D) CH63_155 PF06917 Periplasmic pectate lyase CH63_1551 PF00293 NUDIX domain CH63_1551 PF09297 NADH pyrophosphatase zinc ribbon domain CH63_1552 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CH63_1553 PF01964 Radical SAM ThiC family CH63_1553 PF13667 ThiC-associated domain CH63_1554 PF02581 Thiamine monophosphate synthase CH63_1555 PF00899 ThiF family CH63_1557 PF05690 Thiazole biosynthesis protein ThiG CH63_1558 PF04055 Radical SAM superfamily CH63_1558 PF06968 Biotin and Thiamin Synthesis associated domain CH63_1559 PF01797 Transposase IS200 like CH63_1560 PF04997 RNA polymerase Rpb1, domain 1 CH63_1560 PF04998 RNA polymerase Rpb1, domain 5 CH63_1560 PF00623 RNA polymerase Rpb1, domain 2 CH63_1560 PF04983 RNA polymerase Rpb1, domain 3 CH63_1560 PF05000 RNA polymerase Rpb1, domain 4 CH63_1561 PF04560 RNA polymerase Rpb2, domain 7 CH63_1561 PF04561 RNA polymerase Rpb2, domain 2 CH63_1561 PF04563 RNA polymerase beta subunit CH63_1561 PF04565 RNA polymerase Rpb2, domain 3 CH63_1561 PF10385 RNA polymerase beta subunit external 1 domain CH63_1561 PF00562 RNA polymerase Rpb2, domain 6 CH63_1563 PF00542 Ribosomal protein L7/L12 C-terminal domain CH63_1563 PF16320 Ribosomal protein L7/L12 dimerisation domain CH63_1564 PF00466 Ribosomal protein L10 CH63_1565 PF00687 Ribosomal protein L1p/L10e family CH63_1566 PF00298 Ribosomal protein L11, RNA binding domain CH63_1566 PF03946 Ribosomal protein L11, N-terminal domain CH63_1567 PF00467 KOW motif CH63_1567 PF02357 Transcription termination factor nusG CH63_1568 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CH63_1569 PF00009 Elongation factor Tu GTP binding domain CH63_1569 PF03143 Elongation factor Tu C-terminal domain CH63_1569 PF03144 Elongation factor Tu domain 2 CH63_157 PF04962 KduI/IolB family CH63_1574 PF01695 IstB-like ATP binding protein CH63_1575 PF00665 Integrase core domain CH63_1575 PF02796 Helix-turn-helix domain of resolvase CH63_1576 PF13673 Acetyltransferase (GNAT) domain CH63_1577 PF00485 Phosphoribulokinase / Uridine kinase family CH63_1578 PF03099 Biotin/lipoate A/B protein ligase family CH63_1578 PF08279 HTH domain CH63_1578 PF02237 Biotin protein ligase C terminal domain CH63_1579 PF01565 FAD binding domain CH63_1579 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CH63_158 PF07883 Cupin domain CH63_1585 PF12724 Flavodoxin domain CH63_1586 PF02386 Cation transport protein CH63_1587 PF01205 Uncharacterized protein family UPF0029 CH63_1587 PF09186 Domain of unknown function (DUF1949) CH63_1589 PF09186 Domain of unknown function (DUF1949) CH63_1589 PF01205 Uncharacterized protein family UPF0029 CH63_159 PF00872 Transposase, Mutator family CH63_1590 PF00557 Metallopeptidase family M24 CH63_1591 PF00378 Enoyl-CoA hydratase/isomerase CH63_1591 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH63_1591 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH63_1592 PF00108 Thiolase, N-terminal domain CH63_1592 PF02803 Thiolase, C-terminal domain CH63_1593 PF00970 Oxidoreductase FAD-binding domain CH63_1593 PF00175 Oxidoreductase NAD-binding domain CH63_1594 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CH63_1595 PF02357 Transcription termination factor nusG CH63_1596 PF00490 Delta-aminolevulinic acid dehydratase CH63_1597 PF01026 TatD related DNase CH63_1598 PF01695 IstB-like ATP binding protein CH63_1599 PF00665 Integrase core domain CH63_1599 PF02796 Helix-turn-helix domain of resolvase CH63_16 PF01042 Endoribonuclease L-PSP CH63_160 PF13419 Haloacid dehalogenase-like hydrolase CH63_1600 PF01026 TatD related DNase CH63_1601 PF00902 Sec-independent protein translocase protein (TatC) CH63_1603 PF02416 mttA/Hcf106 family CH63_1604 PF03109 ABC1 family CH63_1605 PF02036 SCP-2 sterol transfer family CH63_1606 PF01209 ubiE/COQ5 methyltransferase family CH63_1607 PF02646 RmuC family CH63_1608 PF09335 SNARE associated Golgi protein CH63_1609 PF02554 Carbon starvation protein CstA CH63_1609 PF13722 5TM C-terminal transporter carbon starvation CstA CH63_161 PF14002 YniB-like protein CH63_1611 PF01048 Phosphorylase superfamily CH63_1612 PF01738 Dienelactone hydrolase family CH63_1613 PF08267 Cobalamin-independent synthase, N-terminal domain CH63_1613 PF01717 Cobalamin-independent synthase, Catalytic domain CH63_1614 PF00892 EamA-like transporter family CH63_1615 PF03466 LysR substrate binding domain CH63_1615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_1616 PF03547 Membrane transport protein CH63_1617 PF03009 Glycerophosphoryl diester phosphodiesterase family CH63_1618 PF17912 MalK OB fold domain CH63_1618 PF00005 ABC transporter CH63_1619 PF00528 Binding-protein-dependent transport system inner membrane component CH63_1620 PF00528 Binding-protein-dependent transport system inner membrane component CH63_1621 PF13416 Bacterial extracellular solute-binding protein CH63_1629 PF00005 ABC transporter CH63_163 PF00950 ABC 3 transport family CH63_1630 PF00005 ABC transporter CH63_1630 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH63_1631 PF02653 Branched-chain amino acid transport system / permease component CH63_1631 PF11862 Domain of unknown function (DUF3382) CH63_1632 PF02653 Branched-chain amino acid transport system / permease component CH63_1633 PF13458 Periplasmic binding protein CH63_1634 PF12568 Acetyltransferase (GNAT) domain, PanZ CH63_1635 PF01797 Transposase IS200 like CH63_1636 PF04545 Sigma-70, region 4 CH63_1636 PF04542 Sigma-70 region 2 CH63_1636 PF00140 Sigma-70 factor, region 1.2 CH63_1637 PF18075 FtsX extracellular domain CH63_1637 PF02687 FtsX-like permease family CH63_1638 PF00005 ABC transporter CH63_1639 PF02881 SRP54-type protein, helical bundle domain CH63_1639 PF00448 SRP54-type protein, GTPase domain CH63_1639 PF00448 SRP54-type protein, GTPase domain CH63_1639 PF02881 SRP54-type protein, helical bundle domain CH63_164 PF00950 ABC 3 transport family CH63_1641 PF06611 Protein of unknown function (DUF1145) CH63_1644 PF07947 YhhN family CH63_1645 PF00403 Heavy-metal-associated domain CH63_1646 PF00403 Heavy-metal-associated domain CH63_1647 PF01206 Sulfurtransferase TusA CH63_1648 PF02592 Putative vitamin uptake transporter CH63_1649 PF08786 DcrB CH63_165 PF00005 ABC transporter CH63_1650 PF02754 Cysteine-rich domain CH63_1650 PF13183 4Fe-4S dicluster domain CH63_1651 PF00890 FAD binding domain CH63_1652 PF01266 FAD dependent oxidoreductase CH63_1652 PF04324 BFD-like [2Fe-2S] binding domain CH63_1653 PF03009 Glycerophosphoryl diester phosphodiesterase family CH63_1656 PF12146 Serine aminopeptidase, S33 CH63_1657 PF01810 LysE type translocator CH63_1658 PF01810 LysE type translocator CH63_1659 PF09382 RQC domain CH63_1659 PF16124 RecQ zinc-binding CH63_1659 PF00570 HRDC domain CH63_1659 PF00271 Helicase conserved C-terminal domain CH63_1659 PF00270 DEAD/DEAH box helicase CH63_166 PF01297 Zinc-uptake complex component A periplasmic CH63_1660 PF02253 Phospholipase A1 CH63_1661 PF03061 Thioesterase superfamily CH63_1662 PF00892 EamA-like transporter family CH63_1663 PF01544 CorA-like Mg2+ transporter protein CH63_1664 PF09370 Phosphoenolpyruvate hydrolase-like CH63_1667 PF13361 UvrD-like helicase C-terminal domain CH63_1667 PF00580 UvrD/REP helicase N-terminal domain CH63_1668 PF13419 Haloacid dehalogenase-like hydrolase CH63_1669 PF00589 Phage integrase family CH63_1669 PF02899 Phage integrase, N-terminal SAM-like domain CH63_167 PF01464 Transglycosylase SLT domain CH63_1670 PF04340 Protein of unknown function, DUF484 CH63_1671 PF01678 Diaminopimelate epimerase CH63_1672 PF13627 Prokaryotic lipoprotein-attachment site CH63_1673 PF01491 Frataxin-like domain CH63_1674 PF01295 Adenylate cyclase, class-I CH63_1674 PF12633 Adenylate cyclase NT domain CH63_1675 PF03900 Porphobilinogen deaminase, C-terminal domain CH63_1675 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CH63_1676 PF02602 Uroporphyrinogen-III synthase HemD CH63_1677 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CH63_1678 PF07719 Tetratricopeptide repeat CH63_1678 PF07219 HemY protein N-terminus CH63_168 PF01914 MarC family integral membrane protein CH63_1685 PF00324 Amino acid permease CH63_1686 PF03808 Glycosyl transferase WecB/TagA/CpsF family CH63_1687 PF06899 WzyE protein, O-antigen assembly polymerase CH63_1688 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 CH63_1689 PF01943 Polysaccharide biosynthesis protein CH63_1690 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH63_1692 PF00483 Nucleotidyl transferase CH63_1693 PF16363 GDP-mannose 4,6 dehydratase CH63_1694 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH63_1694 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH63_1694 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH63_1695 PF02350 UDP-N-acetylglucosamine 2-epimerase CH63_1696 PF02706 Chain length determinant protein CH63_1697 PF00953 Glycosyl transferase family 4 CH63_1698 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH63_1698 PF07498 Rho termination factor, N-terminal domain CH63_1698 PF07497 Rho termination factor, RNA-binding domain CH63_1699 PF00085 Thioredoxin CH63_17 PF13307 Helicase C-terminal domain CH63_17 PF04851 Type III restriction enzyme, res subunit CH63_170 PF13619 KTSC domain CH63_1700 PF00270 DEAD/DEAH box helicase CH63_1700 PF00271 Helicase conserved C-terminal domain CH63_1703 PF00580 UvrD/REP helicase N-terminal domain CH63_1703 PF13361 UvrD-like helicase C-terminal domain CH63_1706 PF00872 Transposase, Mutator family CH63_1708 PF02753 Pili assembly chaperone PapD, C-terminal domain CH63_1708 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH63_1709 PF00577 Outer membrane usher protein CH63_1709 PF13953 PapC C-terminal domain CH63_1709 PF13954 PapC N-terminal domain CH63_171 PF03129 Anticodon binding domain CH63_171 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH63_171 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH63_171 PF02824 TGS domain CH63_1711 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH63_1711 PF02753 Pili assembly chaperone PapD, C-terminal domain CH63_1712 PF01320 Colicin immunity protein / pyocin immunity protein CH63_1717 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CH63_1717 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CH63_1718 PF03466 LysR substrate binding domain CH63_1718 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_172 PF00707 Translation initiation factor IF-3, C-terminal domain CH63_172 PF05198 Translation initiation factor IF-3, N-terminal domain CH63_1724 PF00585 C-terminal regulatory domain of Threonine dehydratase CH63_1724 PF00291 Pyridoxal-phosphate dependent enzyme CH63_1727 PF01063 Amino-transferase class IV CH63_1729 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH63_1729 PF00205 Thiamine pyrophosphate enzyme, central domain CH63_1729 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH63_173 PF01632 Ribosomal protein L35 CH63_1730 PF01078 Magnesium chelatase, subunit ChlI CH63_1730 PF13335 Magnesium chelatase, subunit ChlI C-terminal CH63_1731 PF04219 Protein of unknown function, DUF CH63_1732 PF02653 Branched-chain amino acid transport system / permease component CH63_1733 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_1733 PF03466 LysR substrate binding domain CH63_1734 PF02653 Branched-chain amino acid transport system / permease component CH63_1735 PF00005 ABC transporter CH63_1736 PF13407 Periplasmic binding protein domain CH63_174 PF00453 Ribosomal protein L20 CH63_1743 PF01177 Asp/Glu/Hydantoin racemase CH63_1744 PF00593 TonB dependent receptor CH63_1744 PF07715 TonB-dependent Receptor Plug Domain CH63_1745 PF05958 tRNA (Uracil-5-)-methyltransferase CH63_1746 PF07226 Protein of unknown function (DUF1422) CH63_1747 PF00440 Bacterial regulatory proteins, tetR family CH63_1748 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_1748 PF03466 LysR substrate binding domain CH63_1749 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH63_1749 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH63_175 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CH63_175 PF01409 tRNA synthetases class II core domain (F) CH63_1750 PF00462 Glutaredoxin CH63_1750 PF08534 Redoxin CH63_1751 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH63_1751 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH63_1752 PF03544 Gram-negative bacterial TonB protein C-terminal CH63_1753 PF00529 HlyD membrane-fusion protein of T1SS CH63_1754 PF00005 ABC transporter CH63_1754 PF00664 ABC transporter transmembrane region CH63_1759 PF14698 Argininosuccinate lyase C-terminal CH63_1759 PF00206 Lyase CH63_176 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CH63_176 PF01588 Putative tRNA binding domain CH63_176 PF03483 B3/4 domain CH63_176 PF03147 Ferredoxin-fold anticodon binding domain CH63_176 PF03484 tRNA synthetase B5 domain CH63_1760 PF00696 Amino acid kinase family CH63_1761 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH63_1761 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH63_1762 PF01546 Peptidase family M20/M25/M40 CH63_1762 PF07687 Peptidase dimerisation domain CH63_1763 PF00311 Phosphoenolpyruvate carboxylase CH63_1765 PF13276 HTH-like domain CH63_1765 PF13333 Integrase core domain CH63_1765 PF00665 Integrase core domain CH63_1766 PF02219 Methylenetetrahydrofolate reductase CH63_1767 PF03447 Homoserine dehydrogenase, NAD binding domain CH63_1767 PF00742 Homoserine dehydrogenase CH63_1767 PF00696 Amino acid kinase family CH63_1768 PF01053 Cys/Met metabolism PLP-dependent enzyme CH63_1769 PF01053 Cys/Met metabolism PLP-dependent enzyme CH63_177 PF00216 Bacterial DNA-binding protein CH63_1770 PF01340 Met Apo-repressor, MetJ CH63_1771 PF05360 yiaA/B two helix domain CH63_1772 PF01197 Ribosomal protein L31 CH63_1773 PF18074 Primosomal protein N C-terminal domain CH63_1773 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CH63_1773 PF17764 3′ DNA-binding domain (3′BD) CH63_1773 PF00270 DEAD/DEAH box helicase CH63_1773 PF00271 Helicase conserved C-terminal domain CH63_1775 PF00356 Bacterial regulatory proteins, lacI family CH63_1776 PF05036 Sporulation related domain CH63_1777 PF00227 Proteasome subunit CH63_1778 PF00004 ATPase family associated with various cellular activities (AAA) CH63_1778 PF07724 AAA domain (Cdc48 subfamily) CH63_1778 PF10431 C-terminal, D2-small domain, of ClpB protein CH63_1779 PF01040 UbiA prenyltransferase family CH63_1780 PF03737 Aldolase/RraA CH63_1783 PF00529 HlyD membrane-fusion protein of T1SS CH63_1783 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH63_1784 PF00005 ABC transporter CH63_1784 PF00664 ABC transporter transmembrane region CH63_1784 PF03412 Peptidase C39 family CH63_1786 PF06005 Cell division protein ZapB CH63_1789 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH63_1789 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH63_179 PF01032 FecCD transport family CH63_1790 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CH63_1791 PF00970 Oxidoreductase FAD-binding domain CH63_1791 PF00175 Oxidoreductase NAD-binding domain CH63_1792 PF05656 Protein of unknown function (DUF805) CH63_1793 PF07305 Protein of unknown function (DUF1454) CH63_1794 PF00121 Triosephosphate isomerase CH63_1795 PF03466 LysR substrate binding domain CH63_1795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_1796 PF02585 GlcNAc-PI de-N-acetylase CH63_1797 PF03737 Aldolase/RraA CH63_1798 PF00939 Sodium:sulfate symporter transmembrane region CH63_18 PF00814 Glycoprotease family CH63_180 PF00255 Glutathione peroxidase CH63_1802 PF00365 Phosphofructokinase CH63_1803 PF01545 Cation efflux family CH63_1803 PF16916 Dimerisation domain of Zinc Transporter CH63_1804 PF04754 Putative transposase, YhgA-like CH63_1805 PF07813 LTXXQ motif family protein CH63_1806 PF00486 Transcriptional regulatory protein, C terminal CH63_1806 PF00072 Response regulator receiver domain CH63_1807 PF16527 Two-component sensor protein CpxA, periplasmic domain CH63_1807 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH63_1807 PF00512 His Kinase A (phospho-acceptor) domain CH63_1807 PF00672 HAMP domain CH63_1808 PF12833 Helix-turn-helix domain CH63_1808 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH63_1808 PF02805 Metal binding domain of Ada CH63_1808 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH63_1809 PF00588 SpoU rRNA Methylase family CH63_181 PF00005 ABC transporter CH63_1810 PF00132 Bacterial transferase hexapeptide (six repeats) CH63_1810 PF06426 Serine acetyltransferase, N-terminal CH63_1811 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CH63_1811 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CH63_1812 PF02556 Preprotein translocase subunit SecB CH63_1813 PF00462 Glutaredoxin CH63_1814 PF00581 Rhodanese-like domain CH63_1815 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CH63_1815 PF01676 Metalloenzyme superfamily CH63_1816 PF01551 Peptidase family M23 CH63_1817 PF04748 Divergent polysaccharide deacetylase CH63_1818 PF04748 Divergent polysaccharide deacetylase CH63_1819 PF00107 Zinc-binding dehydrogenase CH63_1819 PF08240 Alcohol dehydrogenase GroES-like domain CH63_182 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH63_1820 PF00155 Aminotransferase class I and II CH63_1821 PF01370 NAD dependent epimerase/dehydratase family CH63_1822 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH63_1823 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH63_1824 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CH63_1825 PF00535 Glycosyl transferase family 2 CH63_1826 PF01467 Cytidylyltransferase-like CH63_1827 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CH63_1827 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CH63_1827 PF06827 Zinc finger found in FPG and IleRS CH63_1828 PF00471 Ribosomal protein L33 CH63_1829 PF00830 Ribosomal L28 family CH63_183 PF00535 Glycosyl transferase family 2 CH63_1830 PF04002 RadC-like JAB domain CH63_1831 PF04127 DNA / pantothenate metabolism flavoprotein CH63_1831 PF02441 Flavoprotein CH63_1832 PF00692 dUTPase CH63_1833 PF00440 Bacterial regulatory proteins, tetR family CH63_1834 PF00156 Phosphoribosyl transferase domain CH63_1835 PF01138 3' exoribonuclease family, domain 1 CH63_1835 PF03725 3' exoribonuclease family, domain 2 CH63_1836 PF03755 YicC-like family, N-terminal region CH63_1836 PF08340 Domain of unknown function (DUF1732) CH63_1837 PF03458 UPF0126 domain CH63_1838 PF01653 NAD-dependent DNA ligase adenylation domain CH63_1838 PF03120 NAD-dependent DNA ligase OB-fold domain CH63_1839 PF00625 Guanylate kinase CH63_184 PF00551 Formyl transferase CH63_184 PF01370 NAD dependent epimerase/dehydratase family CH63_184 PF02911 Formyl transferase, C-terminal domain CH63_1840 PF01192 RNA polymerase Rpb6 CH63_1841 PF13291 ACT domain CH63_1841 PF04607 Region found in RelA / SpoT proteins CH63_1841 PF02824 TGS domain CH63_1842 PF12105 SpoU, rRNA methylase, C-terminal CH63_1842 PF00588 SpoU rRNA Methylase family CH63_1843 PF00270 DEAD/DEAH box helicase CH63_1843 PF17191 RecG wedge domain CH63_1843 PF00271 Helicase conserved C-terminal domain CH63_1844 PF03616 Sodium/glutamate symporter CH63_1845 PF00860 Permease family CH63_1846 PF05170 AsmA family CH63_1847 PF00583 Acetyltransferase (GNAT) family CH63_1847 PF09500 Putative thioesterase (yiiD_Cterm) CH63_1848 PF00665 Integrase core domain CH63_1848 PF02796 Helix-turn-helix domain of resolvase CH63_1849 PF01695 IstB-like ATP binding protein CH63_185 PF01522 Polysaccharide deacetylase CH63_1850 PF01695 IstB-like ATP binding protein CH63_1851 PF00132 Bacterial transferase hexapeptide (six repeats) CH63_1852 PF01488 Shikimate / quinate 5-dehydrogenase CH63_1852 PF08501 Shikimate dehydrogenase substrate binding domain CH63_1852 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CH63_1853 PF01300 Telomere recombination CH63_1854 PF01396 Topoisomerase DNA binding C4 zinc finger CH63_1855 PF04361 Protein of unknown function (DUF494) CH63_1856 PF17782 DprA winged helix domain CH63_1856 PF02481 DNA recombination-mediator protein A CH63_1857 PF01327 Polypeptide deformylase CH63_1858 PF02911 Formyl transferase, C-terminal domain CH63_1858 PF00551 Formyl transferase CH63_1859 PF01189 16S rRNA methyltransferase RsmB/F CH63_1859 PF01029 NusB family CH63_186 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CH63_1860 PF02080 TrkA-C domain CH63_1860 PF02254 TrkA-N domain CH63_1861 PF01741 Large-conductance mechanosensitive channel, MscL CH63_1862 PF03889 Alternative ribosome-rescue factor A CH63_1863 PF13411 MerR HTH family regulatory protein CH63_1864 PF01196 Ribosomal protein L17 CH63_1865 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CH63_1865 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CH63_1865 PF01000 RNA polymerase Rpb3/RpoA insert domain CH63_1866 PF00163 Ribosomal protein S4/S9 N-terminal domain CH63_1866 PF01479 S4 domain CH63_1867 PF00411 Ribosomal protein S11 CH63_1868 PF00416 Ribosomal protein S13/S18 CH63_1869 PF00444 Ribosomal protein L36 CH63_187 PF00892 EamA-like transporter family CH63_1870 PF00344 SecY translocase CH63_1871 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CH63_1872 PF00327 Ribosomal protein L30p/L7e CH63_1873 PF00333 Ribosomal protein S5, N-terminal domain CH63_1873 PF03719 Ribosomal protein S5, C-terminal domain CH63_1874 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CH63_1875 PF00347 Ribosomal protein L6 CH63_1876 PF00410 Ribosomal protein S8 CH63_1877 PF00253 Ribosomal protein S14p/S29e CH63_1878 PF00673 ribosomal L5P family C-terminus CH63_1878 PF00281 Ribosomal protein L5 CH63_1879 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CH63_1879 PF00467 KOW motif CH63_1880 PF00238 Ribosomal protein L14p/L23e CH63_1881 PF00366 Ribosomal protein S17 CH63_1882 PF00831 Ribosomal L29 protein CH63_1883 PF00252 Ribosomal protein L16p/L10e CH63_1884 PF00189 Ribosomal protein S3, C-terminal domain CH63_1884 PF07650 KH domain CH63_1885 PF00237 Ribosomal protein L22p/L17e CH63_1886 PF00203 Ribosomal protein S19 CH63_1887 PF00181 Ribosomal Proteins L2, RNA binding domain CH63_1887 PF03947 Ribosomal Proteins L2, C-terminal domain CH63_1888 PF00276 Ribosomal protein L23 CH63_1889 PF00573 Ribosomal protein L4/L1 family CH63_189 PF00877 NlpC/P60 family CH63_1890 PF00297 Ribosomal protein L3 CH63_1891 PF00338 Ribosomal protein S10p/S20e CH63_1892 PF00210 Ferritin-like domain CH63_1893 PF04324 BFD-like [2Fe-2S] binding domain CH63_1894 PF01797 Transposase IS200 like CH63_1895 PF03143 Elongation factor Tu C-terminal domain CH63_1895 PF03144 Elongation factor Tu domain 2 CH63_1895 PF00009 Elongation factor Tu GTP binding domain CH63_1896 PF00679 Elongation factor G C-terminus CH63_1896 PF03144 Elongation factor Tu domain 2 CH63_1896 PF14492 Elongation Factor G, domain II CH63_1896 PF03764 Elongation factor G, domain IV CH63_1896 PF00009 Elongation factor Tu GTP binding domain CH63_1897 PF00177 Ribosomal protein S7p/S5e CH63_1898 PF00164 Ribosomal protein S12/S23 CH63_1899 PF04077 DsrH like protein CH63_19 PF03843 Outer membrane lipoprotein Slp family CH63_190 PF10437 Bacterial lipoate protein ligase C-terminus CH63_190 PF03099 Biotin/lipoate A/B protein ligase family CH63_1900 PF02635 DsrE/DsrF-like family CH63_1901 PF02635 DsrE/DsrF-like family CH63_1902 PF13309 HTH domain CH63_1902 PF08348 YheO-like PAS domain CH63_1903 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH63_1903 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH63_1904 PF04102 SlyX CH63_1905 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH63_1906 PF09526 Probable metal-binding protein (DUF2387) CH63_1907 PF02254 TrkA-N domain CH63_1907 PF00999 Sodium/hydrogen exchanger family CH63_1908 PF02525 Flavodoxin-like fold CH63_1909 PF00005 ABC transporter CH63_1909 PF12848 ABC transporter CH63_191 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CH63_1910 PF00005 ABC transporter CH63_1910 PF12848 ABC transporter CH63_1911 PF00535 Glycosyl transferase family 2 CH63_1913 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CH63_1914 PF00528 Binding-protein-dependent transport system inner membrane component CH63_1915 PF00005 ABC transporter CH63_1916 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH63_1917 PF01810 LysE type translocator CH63_1918 PF00561 alpha/beta hydrolase fold CH63_1919 PF06794 Uncharacterised protein family (UPF0270) CH63_192 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CH63_1920 PF00485 Phosphoribulokinase / Uridine kinase family CH63_1922 PF02566 OsmC-like protein CH63_1923 PF00027 Cyclic nucleotide-binding domain CH63_1923 PF13545 Crp-like helix-turn-helix domain CH63_1924 PF12805 FUSC-like inner membrane protein yccS CH63_1925 PF00202 Aminotransferase class-III CH63_1926 PF00117 Glutamine amidotransferase class-I CH63_1927 PF05872 Bacterial protein of unknown function (DUF853) CH63_1928 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH63_1929 PF02056 Family 4 glycosyl hydrolase CH63_1929 PF11975 Family 4 glycosyl hydrolase C-terminal domain CH63_193 PF00793 DAHP synthetase I family CH63_1930 PF00356 Bacterial regulatory proteins, lacI family CH63_1932 PF07690 Major Facilitator Superfamily CH63_1933 PF07969 Amidohydrolase family CH63_1934 PF18267 Rubredoxin NAD+ reductase C-terminal domain CH63_1934 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH63_1934 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH63_1934 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH63_1934 PF04324 BFD-like [2Fe-2S] binding domain CH63_1935 PF13806 Rieske-like [2Fe-2S] domain CH63_1936 PF01226 Formate/nitrite transporter CH63_1937 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH63_1937 PF10414 Sirohaem synthase dimerisation region CH63_1937 PF14824 Sirohaem biosynthesis protein central CH63_1938 PF00579 tRNA synthetases class I (W and Y) CH63_1939 PF13419 Haloacid dehalogenase-like hydrolase CH63_194 PF03618 Kinase/pyrophosphorylase CH63_1940 PF00834 Ribulose-phosphate 3 epimerase family CH63_1941 PF02086 D12 class N6 adenine-specific DNA methyltransferase CH63_1942 PF05036 Sporulation related domain CH63_1943 PF01761 3-dehydroquinate synthase CH63_1944 PF01202 Shikimate kinase CH63_1945 PF00263 Bacterial type II and III secretion system protein CH63_1945 PF03958 Bacterial type II/III secretion system short domain CH63_195 PF00391 PEP-utilising enzyme, mobile domain CH63_195 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CH63_195 PF02896 PEP-utilising enzyme, TIM barrel domain CH63_1950 PF00912 Transglycosylase CH63_1950 PF17092 Penicillin-binding protein OB-like domain CH63_1950 PF00905 Penicillin binding protein transpeptidase domain CH63_1951 PF00293 NUDIX domain CH63_1953 PF07095 Intracellular growth attenuator protein IgaA CH63_1954 PF13419 Haloacid dehalogenase-like hydrolase CH63_1955 PF01479 S4 domain CH63_1956 PF01430 Hsp33 protein CH63_1957 PF01293 Phosphoenolpyruvate carboxykinase CH63_1958 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH63_1958 PF00672 HAMP domain CH63_1958 PF00512 His Kinase A (phospho-acceptor) domain CH63_1959 PF00072 Response regulator receiver domain CH63_1959 PF00486 Transcriptional regulatory protein, C terminal CH63_196 PF01594 AI-2E family transporter CH63_1960 PF01272 Transcription elongation factor, GreA/GreB, C-term CH63_1960 PF03449 Transcription elongation factor, N-terminal CH63_1961 PF09371 Tex-like protein N-terminal domain CH63_1961 PF00575 S1 RNA binding domain CH63_1961 PF17674 HHH domain CH63_1961 PF16921 Tex protein YqgF-like domain CH63_1962 PF04023 FeoA domain CH63_1963 PF07670 Nucleoside recognition CH63_1963 PF07664 Ferrous iron transport protein B C terminus CH63_1963 PF02421 Ferrous iron transport protein B CH63_1963 PF17910 FeoB cytosolic helical domain CH63_1964 PF09012 FeoC like transcriptional regulator CH63_1965 PF07338 Protein of unknown function (DUF1471) CH63_1966 PF00561 alpha/beta hydrolase fold CH63_1967 PF00156 Phosphoribosyl transferase domain CH63_1968 PF01521 Iron-sulphur cluster biosynthesis CH63_1968 PF01106 NifU-like domain CH63_1969 PF02446 4-alpha-glucanotransferase CH63_197 PF02913 FAD linked oxidases, C-terminal domain CH63_197 PF01565 FAD binding domain CH63_197 PF13183 4Fe-4S dicluster domain CH63_1970 PF00343 Carbohydrate phosphorylase CH63_1971 PF00343 Carbohydrate phosphorylase CH63_1972 PF00196 Bacterial regulatory proteins, luxR family CH63_1972 PF17874 MalT-like TPR region CH63_1973 PF00581 Rhodanese-like domain CH63_1974 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CH63_1974 PF01694 Rhomboid family CH63_1975 PF00455 DeoR C terminal sensor domain CH63_1975 PF08220 DeoR-like helix-turn-helix domain CH63_1978 PF13333 Integrase core domain CH63_1978 PF00665 Integrase core domain CH63_1978 PF13276 HTH-like domain CH63_1979 PF01695 IstB-like ATP binding protein CH63_198 PF03061 Thioesterase superfamily CH63_1980 PF02796 Helix-turn-helix domain of resolvase CH63_1980 PF00665 Integrase core domain CH63_1985 PF05638 Type VI secretion system effector, Hcp CH63_1987 PF07148 Maltose operon periplasmic protein precursor (MalM) CH63_1988 PF02264 LamB porin CH63_1989 PF00005 ABC transporter CH63_1989 PF17912 MalK OB fold domain CH63_199 PF01521 Iron-sulphur cluster biosynthesis CH63_1991 PF01547 Bacterial extracellular solute-binding protein CH63_1992 PF14785 Maltose transport system permease protein MalF P2 domain CH63_1992 PF00528 Binding-protein-dependent transport system inner membrane component CH63_1993 PF00528 Binding-protein-dependent transport system inner membrane component CH63_1994 PF06146 Phosphate-starvation-inducible E CH63_1995 PF00342 Phosphoglucose isomerase CH63_1996 PF01842 ACT domain CH63_1996 PF00696 Amino acid kinase family CH63_1997 PF08479 POTRA domain, ShlB-type CH63_1997 PF17287 POTRA domain CH63_1997 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH63_1998 PF17287 POTRA domain CH63_1998 PF08479 POTRA domain, ShlB-type CH63_1998 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH63_1999 PF05860 haemagglutination activity domain CH63_1999 PF13332 Hemagglutinin repeat CH63_2 PF07499 RuvA, C-terminal domain CH63_2 PF01330 RuvA N terminal domain CH63_20 PF13193 AMP-binding enzyme C-terminal domain CH63_20 PF00501 AMP-binding enzyme CH63_200 PF01458 Uncharacterized protein family (UPF0051) CH63_2000 PF02607 B12 binding domain CH63_2000 PF02965 Vitamin B12 dependent methionine synthase, activation domain CH63_2000 PF00809 Pterin binding enzyme CH63_2000 PF02574 Homocysteine S-methyltransferase CH63_2000 PF02310 B12 binding domain CH63_2001 PF01614 Bacterial transcriptional regulator CH63_2001 PF09339 IclR helix-turn-helix domain CH63_2002 PF09339 IclR helix-turn-helix domain CH63_2002 PF01614 Bacterial transcriptional regulator CH63_2003 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CH63_2004 PF00463 Isocitrate lyase family CH63_2005 PF01274 Malate synthase CH63_2006 PF04204 Homoserine O-succinyltransferase CH63_201 PF00005 ABC transporter CH63_2015 PF07729 FCD domain CH63_2015 PF00392 Bacterial regulatory proteins, gntR family CH63_2017 PF07690 Major Facilitator Superfamily CH63_2018 PF00294 pfkB family carbohydrate kinase CH63_2019 PF05025 RbsD / FucU transport protein family CH63_202 PF01458 Uncharacterized protein family (UPF0051) CH63_2020 PF02705 K+ potassium transporter CH63_2021 PF12592 Protein of unknown function (DUF3763) CH63_2021 PF17868 AAA lid domain CH63_2021 PF07728 AAA domain (dynein-related subfamily) CH63_2022 PF05762 VWA domain containing CoxE-like protein CH63_2023 PF03590 Aspartate-ammonia ligase CH63_2024 PF01037 Lrp/AsnC ligand binding domain CH63_2025 PF00258 Flavodoxin CH63_2026 PF13932 GidA associated domain CH63_2026 PF01134 Glucose inhibited division protein A CH63_2027 PF02527 rRNA small subunit methyltransferase G CH63_2028 PF03899 ATP synthase I chain CH63_2029 PF00119 ATP synthase A chain CH63_203 PF00266 Aminotransferase class-V CH63_2030 PF00137 ATP synthase subunit C CH63_2031 PF00430 ATP synthase B/B' CF(0) CH63_2032 PF00213 ATP synthase delta (OSCP) subunit CH63_2033 PF00306 ATP synthase alpha/beta chain, C terminal domain CH63_2033 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH63_2033 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH63_2034 PF00231 ATP synthase CH63_2035 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH63_2035 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH63_2036 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CH63_2036 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CH63_2037 PF12804 MobA-like NTP transferase domain CH63_2037 PF00132 Bacterial transferase hexapeptide (six repeats) CH63_2038 PF01380 SIS domain CH63_2039 PF12849 PBP superfamily domain CH63_204 PF02657 Fe-S metabolism associated domain CH63_2040 PF00528 Binding-protein-dependent transport system inner membrane component CH63_2041 PF00528 Binding-protein-dependent transport system inner membrane component CH63_2042 PF00005 ABC transporter CH63_2043 PF01895 PhoU domain CH63_2045 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH63_2046 PF00528 Binding-protein-dependent transport system inner membrane component CH63_2047 PF00528 Binding-protein-dependent transport system inner membrane component CH63_2048 PF13419 Haloacid dehalogenase-like hydrolase CH63_2049 PF00860 Permease family CH63_205 PF17969 L,D-transpeptidase C-terminal domain CH63_205 PF03734 L,D-transpeptidase catalytic domain CH63_205 PF01476 LysM domain CH63_2052 PF12241 Trans-2-enoyl-CoA reductase catalytic region CH63_2052 PF07055 Enoyl reductase FAD binding domain CH63_2052 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CH63_2053 PF10396 GTP-binding protein TrmE N-terminus CH63_2053 PF12631 MnmE helical domain CH63_2053 PF01926 50S ribosome-binding GTPase CH63_2054 PF14849 YidC periplasmic domain CH63_2054 PF02096 60Kd inner membrane protein CH63_2055 PF01809 Putative membrane protein insertion efficiency factor CH63_2056 PF00825 Ribonuclease P CH63_2057 PF00468 Ribosomal protein L34 CH63_2059 PF08299 Bacterial dnaA protein helix-turn-helix CH63_2059 PF11638 DnaA N-terminal domain CH63_2059 PF00308 Bacterial dnaA protein CH63_206 PF01695 IstB-like ATP binding protein CH63_2060 PF02767 DNA polymerase III beta subunit, central domain CH63_2060 PF00712 DNA polymerase III beta subunit, N-terminal domain CH63_2060 PF02768 DNA polymerase III beta subunit, C-terminal domain CH63_2061 PF02463 RecF/RecN/SMC N terminal domain CH63_2062 PF00986 DNA gyrase B subunit, carboxyl terminus CH63_2062 PF01751 Toprim domain CH63_2062 PF00204 DNA gyrase B CH63_2062 PF18053 DNA gyrase B subunit insert domain CH63_2062 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH63_2064 PF13276 HTH-like domain CH63_2064 PF13333 Integrase core domain CH63_2064 PF00665 Integrase core domain CH63_2067 PF02423 Ornithine cyclodeaminase/mu-crystallin family CH63_2068 PF13291 ACT domain CH63_2068 PF00291 Pyridoxal-phosphate dependent enzyme CH63_2069 PF07676 WD40-like Beta Propeller Repeat CH63_2069 PF12566 Protein of unknown function (DUF3748) CH63_207 PF00665 Integrase core domain CH63_207 PF02796 Helix-turn-helix domain of resolvase CH63_2070 PF12566 Protein of unknown function (DUF3748) CH63_2070 PF07676 WD40-like Beta Propeller Repeat CH63_2071 PF07119 Protein of unknown function (DUF1375) CH63_2072 PF00011 Hsp20/alpha crystallin family CH63_2073 PF00011 Hsp20/alpha crystallin family CH63_2074 PF06826 Predicted Permease Membrane Region CH63_2074 PF02080 TrkA-C domain CH63_2075 PF00155 Aminotransferase class I and II CH63_2077 PF00128 Alpha amylase, catalytic domain CH63_2078 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH63_2078 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH63_2080 PF13488 Glycine zipper CH63_2080 PF00691 OmpA family CH63_2082 PF03352 Methyladenine glycosylase CH63_2084 PF02091 Glycyl-tRNA synthetase alpha subunit CH63_2085 PF05746 DALR anticodon binding domain CH63_2085 PF02092 Glycyl-tRNA synthetase beta subunit CH63_2086 PF11254 Protein of unknown function (DUF3053) CH63_2087 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH63_2087 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH63_2087 PF02378 Phosphotransferase system, EIIC CH63_2088 PF01232 Mannitol dehydrogenase Rossmann domain CH63_2088 PF08125 Mannitol dehydrogenase C-terminal domain CH63_2089 PF05068 Mannitol repressor CH63_209 PF04728 Lipoprotein leucine-zipper CH63_2091 PF10928 Protein of unknown function (DUF2810) CH63_2095 PF00672 HAMP domain CH63_2095 PF02203 Tar ligand binding domain homologue CH63_2095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH63_2096 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH63_2096 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH63_2097 PF02634 FdhD/NarQ family CH63_2098 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH63_2098 PF01568 Molydopterin dinucleotide binding domain CH63_2098 PF00384 Molybdopterin oxidoreductase CH63_2099 PF00384 Molybdopterin oxidoreductase CH63_2099 PF01568 Molydopterin dinucleotide binding domain CH63_2099 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH63_21 PF00570 HRDC domain CH63_21 PF01612 3'-5' exonuclease CH63_210 PF00224 Pyruvate kinase, barrel domain CH63_210 PF02887 Pyruvate kinase, alpha/beta domain CH63_2100 PF09163 Formate dehydrogenase N, transmembrane CH63_2100 PF13247 4Fe-4S dicluster domain CH63_2101 PF01292 Prokaryotic cytochrome b561 CH63_2102 PF04216 Protein involved in formate dehydrogenase formation CH63_2103 PF03841 L-seryl-tRNA selenium transferase CH63_2103 PF12390 Selenocysteine synthase N terminal CH63_2106 PF01526 Tn3 transposase DDE domain CH63_2106 PF13700 Domain of unknown function (DUF4158) CH63_2111 PF07690 Major Facilitator Superfamily CH63_2112 PF00665 Integrase core domain CH63_2112 PF13276 HTH-like domain CH63_2112 PF13333 Integrase core domain CH63_2114 PF01757 Acyltransferase family CH63_2115 PF00419 Fimbrial protein CH63_2116 PF13954 PapC N-terminal domain CH63_2116 PF13953 PapC C-terminal domain CH63_2116 PF00577 Outer membrane usher protein CH63_2117 PF00577 Outer membrane usher protein CH63_2117 PF13954 PapC N-terminal domain CH63_2117 PF13953 PapC C-terminal domain CH63_2118 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH63_2118 PF02753 Pili assembly chaperone PapD, C-terminal domain CH63_2120 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH63_2120 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH63_2122 PF13407 Periplasmic binding protein domain CH63_2123 PF00005 ABC transporter CH63_2124 PF02653 Branched-chain amino acid transport system / permease component CH63_2125 PF12833 Helix-turn-helix domain CH63_2127 PF13356 Arm DNA-binding domain CH63_2127 PF14659 Phage integrase, N-terminal SAM-like domain CH63_2127 PF00589 Phage integrase family CH63_2129 PF04606 Ogr/Delta-like zinc finger CH63_213 PF01554 MatE CH63_2130 PF13737 Transposase DDE domain CH63_2131 PF13737 Transposase DDE domain CH63_2134 PF00005 ABC transporter CH63_2136 PF01032 FecCD transport family CH63_2137 PF01032 FecCD transport family CH63_2138 PF01497 Periplasmic binding protein CH63_214 PF00677 Lumazine binding domain CH63_2141 PF00156 Phosphoribosyl transferase domain CH63_2142 PF00291 Pyridoxal-phosphate dependent enzyme CH63_2143 PF17391 Urocanase N-terminal domain CH63_2143 PF17392 Urocanase C-terminal domain CH63_2143 PF01175 Urocanase Rossmann-like domain CH63_2144 PF00221 Aromatic amino acid lyase CH63_2145 PF00324 Amino acid permease CH63_2146 PF12146 Serine aminopeptidase, S33 CH63_2147 PF00884 Sulfatase CH63_2147 PF08019 Phosphoethanolamine transferase EptA/EptB CH63_2148 PF00072 Response regulator receiver domain CH63_2148 PF00196 Bacterial regulatory proteins, luxR family CH63_2149 PF05231 MASE1 CH63_2149 PF07730 Histidine kinase CH63_2149 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH63_2150 PF07690 Major Facilitator Superfamily CH63_2153 PF05594 Haemagluttinin repeat CH63_2153 PF13332 Hemagglutinin repeat CH63_2153 PF05860 haemagglutination activity domain CH63_2153 PF04829 Pre-toxin domain with VENN motif CH63_2154 PF08479 POTRA domain, ShlB-type CH63_2154 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH63_2154 PF17287 POTRA domain CH63_2156 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH63_2157 PF00528 Binding-protein-dependent transport system inner membrane component CH63_2158 PF12911 N-terminal TM domain of oligopeptide transport permease C CH63_2158 PF00528 Binding-protein-dependent transport system inner membrane component CH63_2159 PF00005 ABC transporter CH63_2159 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH63_216 PF07690 Major Facilitator Superfamily CH63_2160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH63_2160 PF00005 ABC transporter CH63_2161 PF01270 Glycosyl hydrolases family 8 CH63_2162 PF17154 Gammaproteobacterial periplasmic sensor domain CH63_2162 PF00563 EAL domain CH63_2162 PF00990 Diguanylate cyclase, GGDEF domain CH63_2162 PF00672 HAMP domain CH63_2163 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH63_2164 PF06917 Periplasmic pectate lyase CH63_2166 PF00375 Sodium:dicarboxylate symporter family CH63_2167 PF05193 Peptidase M16 inactive domain CH63_2167 PF00675 Insulinase (Peptidase family M16) CH63_2168 PF00294 pfkB family carbohydrate kinase CH63_2169 PF01361 Tautomerase enzyme CH63_217 PF00356 Bacterial regulatory proteins, lacI family CH63_2170 PF00563 EAL domain CH63_2172 PF02611 CDP-diacylglycerol pyrophosphatase CH63_2174 PF03631 Virulence factor BrkB CH63_2179 PF02595 Glycerate kinase family CH63_218 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_218 PF03466 LysR substrate binding domain CH63_2180 PF02447 GntP family permease CH63_2181 PF17853 GGDEF-like domain CH63_2181 PF13556 PucR C-terminal helix-turn-helix domain CH63_2181 PF05651 Putative sugar diacid recognition CH63_2182 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH63_2182 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH63_2183 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CH63_2184 PF01432 Peptidase family M3 CH63_2185 PF04445 Putative SAM-dependent methyltransferase CH63_2186 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CH63_2186 PF08548 Peptidase M10 serralysin C terminal CH63_2186 PF00413 Matrixin CH63_2187 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CH63_2187 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH63_2188 PF00582 Universal stress protein family CH63_2189 PF10625 Universal stress protein B (UspB) CH63_2191 PF01384 Phosphate transporter family CH63_2193 PF13188 PAS domain CH63_2193 PF00512 His Kinase A (phospho-acceptor) domain CH63_2193 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH63_2193 PF08448 PAS fold CH63_2193 PF00072 Response regulator receiver domain CH63_2194 PF00005 ABC transporter CH63_2195 PF02653 Branched-chain amino acid transport system / permease component CH63_2196 PF13407 Periplasmic binding protein domain CH63_2198 PF01116 Fructose-bisphosphate aldolase class-II CH63_22 PF03776 Septum formation topological specificity factor MinE CH63_220 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH63_220 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH63_2200 PF00072 Response regulator receiver domain CH63_2200 PF00486 Transcriptional regulatory protein, C terminal CH63_2202 PF02678 Pirin CH63_2202 PF17954 Quercetinase C-terminal cupin domain CH63_2203 PF00356 Bacterial regulatory proteins, lacI family CH63_2203 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH63_2204 PF02447 GntP family permease CH63_2205 PF01202 Shikimate kinase CH63_2209 PF01914 MarC family integral membrane protein CH63_221 PF00877 NlpC/P60 family CH63_2210 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH63_2210 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH63_2215 PF02369 Bacterial Ig-like domain (group 1) CH63_2215 PF09134 Invasin, domain 3 CH63_2215 PF11924 Inverse autotransporter, beta-domain CH63_2215 PF07979 Intimin C-type lectin domain CH63_2216 PF02369 Bacterial Ig-like domain (group 1) CH63_2216 PF11924 Inverse autotransporter, beta-domain CH63_2216 PF09134 Invasin, domain 3 CH63_2217 PF06580 Histidine kinase CH63_2217 PF07694 5TMR of 5TMR-LYT CH63_2218 PF00128 Alpha amylase, catalytic domain CH63_2218 PF02806 Alpha amylase, C-terminal all-beta domain CH63_2218 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH63_2219 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH63_2219 PF18390 Glycogen debranching enzyme C-terminal domain CH63_2219 PF00128 Alpha amylase, catalytic domain CH63_2220 PF00483 Nucleotidyl transferase CH63_2221 PF00534 Glycosyl transferases group 1 CH63_2221 PF08323 Starch synthase catalytic domain CH63_2222 PF00343 Carbohydrate phosphorylase CH63_2223 PF01266 FAD dependent oxidoreductase CH63_2223 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CH63_2226 PF00665 Integrase core domain CH63_2226 PF13333 Integrase core domain CH63_2226 PF13276 HTH-like domain CH63_223 PF00462 Glutaredoxin CH63_2234 PF17871 AAA lid domain CH63_2234 PF10431 C-terminal, D2-small domain, of ClpB protein CH63_2234 PF07724 AAA domain (Cdc48 subfamily) CH63_2234 PF00004 ATPase family associated with various cellular activities (AAA) CH63_224 PF00929 Exonuclease CH63_2241 PF04717 Type VI secretion system, phage-baseplate injector CH63_2243 PF03527 RHS protein CH63_2243 PF05593 RHS Repeat CH63_2246 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH63_2246 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH63_2247 PF02311 AraC-like ligand binding domain CH63_2247 PF12833 Helix-turn-helix domain CH63_2248 PF05025 RbsD / FucU transport protein family CH63_2249 PF00294 pfkB family carbohydrate kinase CH63_225 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH63_2251 PF03358 NADPH-dependent FMN reductase CH63_2252 PF09084 NMT1/THI5 like CH63_2253 PF00296 Luciferase-like monooxygenase CH63_2254 PF00528 Binding-protein-dependent transport system inner membrane component CH63_2255 PF00005 ABC transporter CH63_2256 PF04221 RelB antitoxin CH63_2257 PF00860 Permease family CH63_2258 PF00999 Sodium/hydrogen exchanger family CH63_226 PF18807 Tripartite Tc toxins repeat CH63_226 PF14431 YwqJ-like deaminase CH63_2260 PF03279 Bacterial lipid A biosynthesis acyltransferase CH63_2262 PF00005 ABC transporter CH63_2263 PF02653 Branched-chain amino acid transport system / permease component CH63_2265 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH63_2265 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH63_2266 PF01380 SIS domain CH63_2266 PF00571 CBS domain CH63_2267 PF02798 Glutathione S-transferase, N-terminal domain CH63_227 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH63_2271 PF00313 'Cold-shock' DNA-binding domain CH63_2272 PF00313 'Cold-shock' DNA-binding domain CH63_2273 PF05433 Glycine zipper 2TM domain CH63_2274 PF00753 Metallo-beta-lactamase superfamily CH63_2275 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CH63_2275 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH63_2276 PF02627 Carboxymuconolactone decarboxylase family CH63_2277 PF07690 Major Facilitator Superfamily CH63_228 PF00440 Bacterial regulatory proteins, tetR family CH63_228 PF16925 Tetracyclin repressor-like, C-terminal domain CH63_2280 PF02954 Bacterial regulatory protein, Fis family CH63_2281 PF01207 Dihydrouridine synthase (Dus) CH63_2283 PF00474 Sodium:solute symporter family CH63_2284 PF06196 Protein of unknown function (DUF997) CH63_2286 PF02785 Biotin carboxylase C-terminal domain CH63_2286 PF00289 Biotin carboxylase, N-terminal domain CH63_2286 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH63_2287 PF00364 Biotin-requiring enzyme CH63_2288 PF01220 Dehydroquinase class II CH63_2289 PF01794 Ferric reductase like transmembrane component CH63_229 PF08019 Phosphoethanolamine transferase EptA/EptB CH63_229 PF00884 Sulfatase CH63_2290 PF00174 Oxidoreductase molybdopterin binding domain CH63_2291 PF00107 Zinc-binding dehydrogenase CH63_2291 PF08240 Alcohol dehydrogenase GroES-like domain CH63_2292 PF00990 Diguanylate cyclase, GGDEF domain CH63_2292 PF00563 EAL domain CH63_2292 PF17157 Gammaproteobacterial periplasmic sensor domain CH63_2294 PF04085 rod shape-determining protein MreC CH63_2295 PF04093 rod shape-determining protein MreD CH63_2296 PF02545 Maf-like protein CH63_2297 PF00575 S1 RNA binding domain CH63_2297 PF10150 Ribonuclease E/G family CH63_2298 PF13116 Protein of unknown function CH63_2298 PF13502 AsmA-like C-terminal region CH63_2299 PF00795 Carbon-nitrogen hydrolase CH63_23 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CH63_230 PF01047 MarR family CH63_2300 PF01523 Putative modulator of DNA gyrase CH63_2301 PF18807 Tripartite Tc toxins repeat CH63_2301 PF14431 YwqJ-like deaminase CH63_2302 PF18807 Tripartite Tc toxins repeat CH63_2302 PF05785 Rho-activating domain of cytotoxic necrotizing factor CH63_2306 PF12255 Insecticide toxin TcdB middle/C-terminal region CH63_2306 PF03534 Salmonella virulence plasmid 65kDa B protein CH63_2306 PF12256 Insecticide toxin TcdB middle/N-terminal region CH63_2307 PF18413 Neuraminidase-like domain CH63_2307 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain CH63_231 PF05433 Glycine zipper 2TM domain CH63_2310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_2310 PF03466 LysR substrate binding domain CH63_2311 PF07869 Protein of unknown function (DUF1656) CH63_2312 PF13533 Biotin-lipoyl like CH63_2313 PF04632 Fusaric acid resistance protein family CH63_2314 PF00171 Aldehyde dehydrogenase family CH63_2315 PF00171 Aldehyde dehydrogenase family CH63_2317 PF01337 Barstar (barnase inhibitor) CH63_2318 PF04751 Protein of unknown function (DUF615) CH63_2319 PF01523 Putative modulator of DNA gyrase CH63_232 PF03702 Anhydro-N-acetylmuramic acid kinase CH63_2321 PF07361 Cytochrome b562 CH63_2322 PF01272 Transcription elongation factor, GreA/GreB, C-term CH63_2322 PF14760 Rnk N-terminus CH63_2323 PF00128 Alpha amylase, catalytic domain CH63_2323 PF11941 Domain of unknown function (DUF3459) CH63_2324 PF00367 phosphotransferase system, EIIB CH63_2324 PF02378 Phosphotransferase system, EIIC CH63_2325 PF00356 Bacterial regulatory proteins, lacI family CH63_2327 PF01042 Endoribonuclease L-PSP CH63_2328 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CH63_2328 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CH63_2329 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH63_2329 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH63_233 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CH63_2330 PF00381 PTS HPr component phosphorylation site CH63_2331 PF03668 P-loop ATPase protein family CH63_2332 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH63_2333 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH63_2334 PF04552 Sigma-54, DNA binding domain CH63_2334 PF04963 Sigma-54 factor, core binding domain CH63_2334 PF00309 Sigma-54 factor, Activator interacting domain (AID) CH63_2335 PF00005 ABC transporter CH63_2335 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH63_2336 PF03968 OstA-like protein CH63_2337 PF06835 Lipopolysaccharide-assembly, LptC-related CH63_2339 PF01380 SIS domain CH63_2339 PF00571 CBS domain CH63_234 PF01243 Pyridoxamine 5'-phosphate oxidase CH63_234 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CH63_2340 PF01699 Sodium/calcium exchanger protein CH63_2341 PF00005 ABC transporter CH63_2342 PF02405 Permease MlaE CH63_2343 PF02470 MlaD protein CH63_2344 PF05494 MlaC protein CH63_2345 PF13466 STAS domain CH63_2346 PF01722 BolA-like protein CH63_2347 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH63_2348 PF13180 PDZ domain CH63_2349 PF01797 Transposase IS200 like CH63_235 PF01479 S4 domain CH63_235 PF00579 tRNA synthetases class I (W and Y) CH63_2350 PF13180 PDZ domain CH63_2350 PF00595 PDZ domain CH63_2351 PF06295 Protein of unknown function (DUF1043) CH63_2353 PF03969 AFG1-like ATPase CH63_2354 PF00572 Ribosomal protein L13 CH63_2355 PF00380 Ribosomal protein S9/S16 CH63_2356 PF00043 Glutathione S-transferase, C-terminal domain CH63_2356 PF02798 Glutathione S-transferase, N-terminal domain CH63_2357 PF04386 Stringent starvation protein B CH63_2359 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH63_2359 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH63_236 PF08543 Phosphomethylpyrimidine kinase CH63_2360 PF00310 Glutamine amidotransferases class-II CH63_2360 PF04898 Glutamate synthase central domain CH63_2360 PF01645 Conserved region in glutamate synthase CH63_2360 PF01493 GXGXG motif CH63_2361 PF04055 Radical SAM superfamily CH63_2361 PF16199 Radical_SAM C-terminal domain CH63_2362 PF00072 Response regulator receiver domain CH63_2362 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH63_2362 PF00989 PAS fold CH63_2362 PF00512 His Kinase A (phospho-acceptor) domain CH63_2362 PF01627 Hpt domain CH63_2362 PF18415 Histidine kinase receptor ArcB trans-membrane domain CH63_2364 PF00912 Transglycosylase CH63_2365 PF04972 BON domain CH63_2366 PF13580 SIS domain CH63_2367 PF02021 Uncharacterised protein family UPF0102 CH63_2368 PF04348 LppC putative lipoprotein CH63_2369 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH63_237 PF02798 Glutathione S-transferase, N-terminal domain CH63_237 PF00043 Glutathione S-transferase, C-terminal domain CH63_2370 PF17954 Quercetinase C-terminal cupin domain CH63_2370 PF02678 Pirin CH63_2371 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_2371 PF03466 LysR substrate binding domain CH63_2372 PF13409 Glutathione S-transferase, N-terminal domain CH63_2373 PF01695 IstB-like ATP binding protein CH63_2374 PF01695 IstB-like ATP binding protein CH63_2375 PF02796 Helix-turn-helix domain of resolvase CH63_2375 PF00665 Integrase core domain CH63_238 PF11656 YjbD family (DUF3811) CH63_2381 PF00872 Transposase, Mutator family CH63_2382 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CH63_2383 PF12804 MobA-like NTP transferase domain CH63_2384 PF06288 Protein of unknown function (DUF1040) CH63_2385 PF01636 Phosphotransferase enzyme family CH63_2386 PF01323 DSBA-like thioredoxin domain CH63_2387 PF00476 DNA polymerase family A CH63_2387 PF01367 5'-3' exonuclease, C-terminal SAM fold CH63_2387 PF01612 3'-5' exonuclease CH63_2387 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH63_2389 PF01797 Transposase IS200 like CH63_239 PF04893 Yip1 domain CH63_2390 PF01926 50S ribosome-binding GTPase CH63_2391 PF04220 Der GTPase activator (YihI) CH63_2392 PF04055 Radical SAM superfamily CH63_2392 PF06969 HemN C-terminal domain CH63_2393 PF02954 Bacterial regulatory protein, Fis family CH63_2393 PF00158 Sigma-54 interaction domain CH63_2393 PF00072 Response regulator receiver domain CH63_2394 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH63_2394 PF00512 His Kinase A (phospho-acceptor) domain CH63_2394 PF00989 PAS fold CH63_2395 PF03951 Glutamine synthetase, beta-Grasp domain CH63_2395 PF00120 Glutamine synthetase, catalytic domain CH63_2397 PF13419 Haloacid dehalogenase-like hydrolase CH63_2398 PF03631 Virulence factor BrkB CH63_2399 PF02580 D-Tyr-tRNA(Tyr) deacylase CH63_24 PF03775 Septum formation inhibitor MinC, C-terminal domain CH63_24 PF05209 Septum formation inhibitor MinC, N-terminal domain CH63_240 PF00854 POT family CH63_2400 PF01695 IstB-like ATP binding protein CH63_2401 PF02796 Helix-turn-helix domain of resolvase CH63_2401 PF00665 Integrase core domain CH63_2402 PF12102 Domain of unknown function (DUF3578) CH63_2402 PF07728 AAA domain (dynein-related subfamily) CH63_2404 PF01527 Transposase CH63_2405 PF01555 DNA methylase CH63_2410 PF00665 Integrase core domain CH63_2414 PF05987 Bacterial protein of unknown function (DUF898) CH63_2416 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH63_2417 PF12833 Helix-turn-helix domain CH63_2418 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH63_2420 PF02896 PEP-utilising enzyme, TIM barrel domain CH63_2420 PF00381 PTS HPr component phosphorylation site CH63_2420 PF00391 PEP-utilising enzyme, mobile domain CH63_2420 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH63_2420 PF05524 PEP-utilising enzyme, N-terminal CH63_2421 PF10696 Protein of unknown function (DUF2501) CH63_2422 PF03992 Antibiotic biosynthesis monooxygenase CH63_2423 PF01791 DeoC/LacD family aldolase CH63_2424 PF13407 Periplasmic binding protein domain CH63_2427 PF02653 Branched-chain amino acid transport system / permease component CH63_2428 PF00005 ABC transporter CH63_2429 PF04198 Putative sugar-binding domain CH63_2429 PF00325 Bacterial regulatory proteins, crp family CH63_243 PF00005 ABC transporter CH63_2430 PF00325 Bacterial regulatory proteins, crp family CH63_2430 PF04198 Putative sugar-binding domain CH63_2431 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH63_2431 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH63_2432 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH63_2435 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH63_2436 PF00873 AcrB/AcrD/AcrF family CH63_2438 PF01095 Pectinesterase CH63_2439 PF00990 Diguanylate cyclase, GGDEF domain CH63_244 PF00005 ABC transporter CH63_244 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH63_2440 PF07256 Protein of unknown function (DUF1435) CH63_2442 PF05175 Methyltransferase small domain CH63_2442 PF08468 Methyltransferase small domain N-terminal CH63_2443 PF03603 DNA polymerase III psi subunit CH63_2444 PF00583 Acetyltransferase (GNAT) family CH63_2445 PF16658 Class II release factor RF3, C-terminal domain CH63_2445 PF03144 Elongation factor Tu domain 2 CH63_2445 PF00009 Elongation factor Tu GTP binding domain CH63_2446 PF04972 BON domain CH63_2447 PF07043 Protein of unknown function (DUF1328) CH63_2448 PF01734 Patatin-like phospholipase CH63_2449 PF01026 TatD related DNase CH63_245 PF12911 N-terminal TM domain of oligopeptide transport permease C CH63_245 PF00528 Binding-protein-dependent transport system inner membrane component CH63_2450 PF01026 TatD related DNase CH63_2451 PF07670 Nucleoside recognition CH63_2451 PF01773 Na+ dependent nucleoside transporter N-terminus CH63_2451 PF07662 Na+ dependent nucleoside transporter C-terminus CH63_2452 PF01791 DeoC/LacD family aldolase CH63_2453 PF02885 Glycosyl transferase family, helical bundle domain CH63_2453 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CH63_2453 PF00591 Glycosyl transferase family, a/b domain CH63_2454 PF00591 Glycosyl transferase family, a/b domain CH63_2454 PF02885 Glycosyl transferase family, helical bundle domain CH63_2454 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CH63_2455 PF01676 Metalloenzyme superfamily CH63_2456 PF01048 Phosphorylase superfamily CH63_2457 PF10144 Bacterial virulence factor haemolysin CH63_2458 PF18429 Domain of unknown function (DUF5609) CH63_2459 PF18073 Rubredoxin metal binding domain CH63_246 PF00528 Binding-protein-dependent transport system inner membrane component CH63_2460 PF13521 AAA domain CH63_2460 PF01381 Helix-turn-helix CH63_2462 PF00005 ABC transporter CH63_2462 PF12848 ABC transporter CH63_2463 PF12848 ABC transporter CH63_2463 PF00005 ABC transporter CH63_2464 PF00691 OmpA family CH63_2465 PF00990 Diguanylate cyclase, GGDEF domain CH63_2465 PF17152 Periplasmic sensor domain CH63_2467 PF00689 Cation transporting ATPase, C-terminus CH63_2467 PF00690 Cation transporter/ATPase, N-terminus CH63_2468 PF14718 Soluble lytic murein transglycosylase L domain CH63_2468 PF01464 Transglycosylase SLT domain CH63_2469 PF01931 Protein of unknown function DUF84 CH63_247 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH63_2470 PF01371 Trp repressor protein CH63_2471 PF12833 Helix-turn-helix domain CH63_2471 PF06445 GyrI-like small molecule binding domain CH63_2472 PF00300 Histidine phosphatase superfamily (branch 1) CH63_2474 PF05981 CreA protein CH63_2475 PF00072 Response regulator receiver domain CH63_2475 PF00486 Transcriptional regulatory protein, C terminal CH63_2479 PF00288 GHMP kinases N terminal domain CH63_2479 PF08544 GHMP kinases C terminal CH63_2480 PF00291 Pyridoxal-phosphate dependent enzyme CH63_2480 PF14821 Threonine synthase N terminus CH63_2482 PF03883 Peroxide stress protein YaaA CH63_2483 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH63_2484 PF00994 Probable molybdopterin binding domain CH63_2485 PF07690 Major Facilitator Superfamily CH63_2487 PF01184 GPR1/FUN34/yaaH family CH63_2488 PF00012 Hsp70 protein CH63_2489 PF01556 DnaJ C terminal domain CH63_2489 PF00226 DnaJ domain CH63_2489 PF00684 DnaJ central domain CH63_249 PF00158 Sigma-54 interaction domain CH63_249 PF02954 Bacterial regulatory protein, Fis family CH63_2490 PF06965 Na+/H+ antiporter 1 CH63_2491 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_2491 PF03466 LysR substrate binding domain CH63_2492 PF01649 Ribosomal protein S20 CH63_2493 PF06574 FAD synthetase CH63_2493 PF01687 Riboflavin kinase CH63_2494 PF00133 tRNA synthetases class I (I, L, M and V) CH63_2494 PF06827 Zinc finger found in FPG and IleRS CH63_2494 PF08264 Anticodon-binding domain of tRNA CH63_2495 PF01252 Signal peptidase (SPase) II CH63_2496 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH63_2497 PF02401 LytB protein CH63_2498 PF01797 Transposase IS200 like CH63_2499 PF05173 Dihydrodipicolinate reductase, C-terminus CH63_2499 PF01113 Dihydrodipicolinate reductase, N-terminus CH63_25 PF05166 YcgL domain CH63_250 PF04012 PspA/IM30 family CH63_2500 PF00117 Glutamine amidotransferase class-I CH63_2500 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CH63_2501 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH63_2501 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH63_2501 PF02142 MGS-like domain CH63_2502 PF01810 LysE type translocator CH63_2503 PF06738 Putative threonine/serine exporter CH63_2504 PF12821 Threonine/Serine exporter, ThrE CH63_2505 PF00186 Dihydrofolate reductase CH63_2506 PF01797 Transposase IS200 like CH63_2507 PF10688 Bacterial inner membrane protein CH63_2508 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CH63_2508 PF08666 SAF domain CH63_2509 PF01232 Mannitol dehydrogenase Rossmann domain CH63_2509 PF08125 Mannitol dehydrogenase C-terminal domain CH63_251 PF06667 Phage shock protein B CH63_2510 PF02614 Glucuronate isomerase CH63_2511 PF07690 Major Facilitator Superfamily CH63_2512 PF07729 FCD domain CH63_2512 PF00392 Bacterial regulatory proteins, gntR family CH63_2514 PF09335 SNARE associated Golgi protein CH63_2515 PF13721 SecD export protein N-terminal TM region CH63_2517 PF05957 Bacterial protein of unknown function (DUF883) CH63_2518 PF07332 Putative Actinobacterial Holin-X, holin superfamily III CH63_252 PF04024 PspC domain CH63_2520 PF07681 DoxX CH63_2521 PF13409 Glutathione S-transferase, N-terminal domain CH63_2522 PF00665 Integrase core domain CH63_2522 PF02796 Helix-turn-helix domain of resolvase CH63_2523 PF01695 IstB-like ATP binding protein CH63_2524 PF00293 NUDIX domain CH63_2525 PF02810 SEC-C motif CH63_2525 PF07517 SecA DEAD-like domain CH63_2525 PF07516 SecA Wing and Scaffold domain CH63_2525 PF01043 SecA preprotein cross-linking domain CH63_2526 PF06558 Secretion monitor precursor protein (SecM) CH63_2528 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CH63_2529 PF12327 FtsZ family, C-terminal domain CH63_2529 PF00091 Tubulin/FtsZ family, GTPase domain CH63_2530 PF02491 SHS2 domain inserted in FTSA CH63_2531 PF03799 Cell division protein FtsQ CH63_2531 PF08478 POTRA domain, FtsQ-type CH63_2532 PF01820 D-ala D-ala ligase N-terminus CH63_2532 PF07478 D-ala D-ala ligase C-terminus CH63_2533 PF02875 Mur ligase family, glutamate ligase domain CH63_2533 PF08245 Mur ligase middle domain CH63_2533 PF01225 Mur ligase family, catalytic domain CH63_2534 PF03033 Glycosyltransferase family 28 N-terminal domain CH63_2534 PF04101 Glycosyltransferase family 28 C-terminal domain CH63_2535 PF01098 Cell cycle protein CH63_2536 PF02875 Mur ligase family, glutamate ligase domain CH63_2536 PF08245 Mur ligase middle domain CH63_2537 PF00953 Glycosyl transferase family 4 CH63_2537 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CH63_2538 PF02875 Mur ligase family, glutamate ligase domain CH63_2538 PF08245 Mur ligase middle domain CH63_2538 PF01225 Mur ligase family, catalytic domain CH63_2539 PF08245 Mur ligase middle domain CH63_2539 PF01225 Mur ligase family, catalytic domain CH63_2539 PF02875 Mur ligase family, glutamate ligase domain CH63_254 PF04317 YcjX-like family, DUF463 CH63_2540 PF03717 Penicillin-binding Protein dimerisation domain CH63_2540 PF00905 Penicillin binding protein transpeptidase domain CH63_2541 PF04999 Cell division protein FtsL CH63_2542 PF01795 MraW methylase family CH63_2543 PF02381 MraZ protein, putative antitoxin-like CH63_2544 PF06610 L-alanine exporter CH63_2545 PF00356 Bacterial regulatory proteins, lacI family CH63_2545 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH63_2546 PF01797 Transposase IS200 like CH63_2547 PF10369 Small subunit of acetolactate synthase CH63_2548 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH63_2548 PF00205 Thiamine pyrophosphate enzyme, central domain CH63_2548 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH63_2549 PF00501 AMP-binding enzyme CH63_255 PF05128 Domain of unknown function (DUF697) CH63_2550 PF03466 LysR substrate binding domain CH63_2550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_2552 PF01797 Transposase IS200 like CH63_2553 PF08502 LeuA allosteric (dimerisation) domain CH63_2553 PF00682 HMGL-like CH63_2554 PF00180 Isocitrate/isopropylmalate dehydrogenase CH63_2555 PF00330 Aconitase family (aconitate hydratase) CH63_2556 PF00694 Aconitase C-terminal domain CH63_2557 PF07690 Major Facilitator Superfamily CH63_2558 PF12793 Sugar transport-related sRNA regulator N-term CH63_2558 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH63_2561 PF00528 Binding-protein-dependent transport system inner membrane component CH63_2562 PF00005 ABC transporter CH63_2563 PF09335 SNARE associated Golgi protein CH63_2564 PF03104 DNA polymerase family B, exonuclease domain CH63_2564 PF00136 DNA polymerase family B CH63_2565 PF00176 SNF2 family N-terminal domain CH63_2565 PF00271 Helicase conserved C-terminal domain CH63_2565 PF18337 RapA N-terminal Tudor like domain CH63_2565 PF12137 RNA polymerase recycling family C-terminal CH63_2565 PF18339 RapA N-terminal Tudor like domain 1 CH63_2576 PF04717 Type VI secretion system, phage-baseplate injector CH63_2577 PF17871 AAA lid domain CH63_2577 PF07724 AAA domain (Cdc48 subfamily) CH63_2577 PF00004 ATPase family associated with various cellular activities (AAA) CH63_2577 PF10431 C-terminal, D2-small domain, of ClpB protein CH63_258 PF00158 Sigma-54 interaction domain CH63_258 PF18024 Helix-turn-helix domain CH63_2586 PF00849 RNA pseudouridylate synthase CH63_2587 PF00226 DnaJ domain CH63_2587 PF05099 Tellurite resistance protein TerB CH63_2588 PF03968 OstA-like protein CH63_2588 PF04453 LPS transport system D CH63_2589 PF00639 PPIC-type PPIASE domain CH63_2589 PF09312 SurA N-terminal domain CH63_259 PF01797 Transposase IS200 like CH63_2590 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CH63_2591 PF00398 Ribosomal RNA adenine dimethylase CH63_2592 PF04379 ApaG domain CH63_2593 PF00149 Calcineurin-like phosphoesterase CH63_2595 PF01797 Transposase IS200 like CH63_2597 PF00375 Sodium:dicarboxylate symporter family CH63_2598 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH63_2599 PF01863 Protein of unknown function DUF45 CH63_260 PF08534 Redoxin CH63_2600 PF03797 Autotransporter beta-domain CH63_2601 PF05175 Methyltransferase small domain CH63_2602 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH63_2602 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH63_2603 PF03729 Short repeat of unknown function (DUF308) CH63_2606 PF00092 von Willebrand factor type A domain CH63_2608 PF02342 TerD domain CH63_2609 PF00092 von Willebrand factor type A domain CH63_261 PF13378 Enolase C-terminal domain-like CH63_261 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH63_2610 PF08479 POTRA domain, ShlB-type CH63_2610 PF17287 POTRA domain CH63_2610 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH63_2611 PF05860 haemagglutination activity domain CH63_2611 PF13018 Extended Signal Peptide of Type V secretion system CH63_2611 PF13332 Hemagglutinin repeat CH63_2611 PF04829 Pre-toxin domain with VENN motif CH63_2612 PF13018 Extended Signal Peptide of Type V secretion system CH63_2612 PF05860 haemagglutination activity domain CH63_2612 PF04829 Pre-toxin domain with VENN motif CH63_2612 PF13332 Hemagglutinin repeat CH63_2614 PF13332 Hemagglutinin repeat CH63_2614 PF13018 Extended Signal Peptide of Type V secretion system CH63_2614 PF04829 Pre-toxin domain with VENN motif CH63_2614 PF05860 haemagglutination activity domain CH63_2616 PF13018 Extended Signal Peptide of Type V secretion system CH63_2616 PF04829 Pre-toxin domain with VENN motif CH63_2616 PF05860 haemagglutination activity domain CH63_2616 PF13332 Hemagglutinin repeat CH63_262 PF00246 Zinc carboxypeptidase CH63_2620 PF17912 MalK OB fold domain CH63_2620 PF03459 TOBE domain CH63_2620 PF00005 ABC transporter CH63_2621 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CH63_2622 PF00356 Bacterial regulatory proteins, lacI family CH63_2623 PF13416 Bacterial extracellular solute-binding protein CH63_2624 PF00528 Binding-protein-dependent transport system inner membrane component CH63_2625 PF00528 Binding-protein-dependent transport system inner membrane component CH63_2627 PF14310 Fibronectin type III-like domain CH63_2627 PF00933 Glycosyl hydrolase family 3 N terminal domain CH63_2627 PF01915 Glycosyl hydrolase family 3 C-terminal domain CH63_2629 PF04632 Fusaric acid resistance protein family CH63_263 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH63_2630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH63_2630 PF00529 HlyD membrane-fusion protein of T1SS CH63_2638 PF01042 Endoribonuclease L-PSP CH63_264 PF01544 CorA-like Mg2+ transporter protein CH63_2642 PF03466 LysR substrate binding domain CH63_2642 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_2653 PF04542 Sigma-70 region 2 CH63_2653 PF03979 Sigma-70 factor, region 1.1 CH63_2653 PF04546 Sigma-70, non-essential region CH63_2653 PF04539 Sigma-70 region 3 CH63_2653 PF04545 Sigma-70, region 4 CH63_2653 PF00140 Sigma-70 factor, region 1.2 CH63_2654 PF08278 DNA primase DnaG DnaB-binding CH63_2654 PF01807 CHC2 zinc finger CH63_2654 PF08275 DNA primase catalytic core, N-terminal domain CH63_2654 PF10410 DnaB-helicase binding domain of primase CH63_2655 PF01165 Ribosomal protein S21 CH63_2656 PF00814 Glycoprotease family CH63_2657 PF02660 Glycerol-3-phosphate acyltransferase CH63_2658 PF02152 Dihydroneopterin aldolase CH63_2659 PF02673 Bacitracin resistance protein BacA CH63_266 PF07859 alpha/beta hydrolase fold CH63_266 PF13472 GDSL-like Lipase/Acylhydrolase family CH63_2660 PF01966 HD domain CH63_2660 PF12627 Probable RNA and SrmB- binding site of polymerase A CH63_2660 PF01743 Poly A polymerase head domain CH63_2661 PF08239 Bacterial SH3 domain CH63_2662 PF01928 CYTH domain CH63_2663 PF08335 GlnD PII-uridylyltransferase CH63_2663 PF03710 Glutamate-ammonia ligase adenylyltransferase CH63_2664 PF00294 pfkB family carbohydrate kinase CH63_2664 PF01467 Cytidylyltransferase-like CH63_2665 PF13520 Amino acid permease CH63_2666 PF04380 Membrane fusogenic activity CH63_2668 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CH63_2669 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH63_2670 PF03738 Glutathionylspermidine synthase preATP-grasp CH63_2671 PF06693 Protein of unknown function (DUF1190) CH63_2673 PF02321 Outer membrane efflux protein CH63_2674 PF00293 NUDIX domain CH63_2675 PF06853 Protein of unknown function (DUF1249) CH63_2676 PF00149 Calcineurin-like phosphoesterase CH63_2677 PF05728 Uncharacterised protein family (UPF0227) CH63_2678 PF00986 DNA gyrase B subunit, carboxyl terminus CH63_2678 PF01751 Toprim domain CH63_2678 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH63_2678 PF00204 DNA gyrase B CH63_2679 PF03466 LysR substrate binding domain CH63_2679 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_268 PF01171 PP-loop family CH63_2680 PF02525 Flavodoxin-like fold CH63_2681 PF00521 DNA gyrase/topoisomerase IV, subunit A CH63_2681 PF03989 DNA gyrase C-terminal domain, beta-propeller CH63_2682 PF01553 Acyltransferase CH63_2683 PF07732 Multicopper oxidase CH63_2683 PF07731 Multicopper oxidase CH63_2684 PF04055 Radical SAM superfamily CH63_2684 PF08497 Radical SAM N-terminal CH63_2684 PF11842 Domain of unknown function (DUF3362) CH63_2685 PF11842 Domain of unknown function (DUF3362) CH63_2685 PF04055 Radical SAM superfamily CH63_2685 PF08497 Radical SAM N-terminal CH63_2686 PF00248 Aldo/keto reductase family CH63_2687 PF00465 Iron-containing alcohol dehydrogenase CH63_2688 PF06719 AraC-type transcriptional regulator N-terminus CH63_2688 PF12833 Helix-turn-helix domain CH63_2689 PF09335 SNARE associated Golgi protein CH63_269 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH63_269 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CH63_269 PF10371 Domain of unknown function CH63_269 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CH63_269 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CH63_2690 PF01053 Cys/Met metabolism PLP-dependent enzyme CH63_2691 PF01618 MotA/TolQ/ExbB proton channel family CH63_2693 PF02472 Biopolymer transport protein ExbD/TolR CH63_27 PF13406 Transglycosylase SLT domain CH63_270 PF00893 Small Multidrug Resistance protein CH63_2700 PF00437 Type II/IV secretion system protein CH63_2703 PF04972 BON domain CH63_2703 PF13629 Pilus formation protein N terminal region CH63_2703 PF00263 Bacterial type II and III secretion system protein CH63_2704 PF04972 BON domain CH63_2704 PF00263 Bacterial type II and III secretion system protein CH63_2704 PF13629 Pilus formation protein N terminal region CH63_2708 PF13954 PapC N-terminal domain CH63_2708 PF13953 PapC C-terminal domain CH63_2708 PF00577 Outer membrane usher protein CH63_2709 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH63_2709 PF02753 Pili assembly chaperone PapD, C-terminal domain CH63_271 PF02308 MgtC family CH63_2710 PF00419 Fimbrial protein CH63_2710 PF09222 Fimbrial adhesin F17-AG, lectin domain CH63_2711 PF01497 Periplasmic binding protein CH63_2714 PF00771 FHIPEP family CH63_2715 PF01312 FlhB HrpN YscU SpaS Family CH63_2716 PF01311 Bacterial export proteins, family 1 CH63_2717 PF01313 Bacterial export proteins, family 3 CH63_2718 PF00813 FliP family CH63_2719 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH63_272 PF03891 Domain of unknown function (DUF333) CH63_2721 PF02954 Bacterial regulatory protein, Fis family CH63_2721 PF00072 Response regulator receiver domain CH63_2721 PF00158 Sigma-54 interaction domain CH63_2722 PF02049 Flagellar hook-basal body complex protein FliE CH63_2723 PF08345 Flagellar M-ring protein C-terminal CH63_2723 PF01514 Secretory protein of YscJ/FliF family CH63_2726 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH63_2726 PF18269 T3SS EscN ATPase C-terminal domain CH63_273 PF03724 META domain CH63_2730 PF13144 Chaperone for flagella basal body P-ring formation CH63_2731 PF00460 Flagella basal body rod protein CH63_2732 PF00460 Flagella basal body rod protein CH63_2732 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH63_2733 PF13860 FlgD Ig-like domain CH63_2733 PF03963 Flagellar hook capping protein - N-terminal region CH63_2733 PF13861 FlgD Tudor-like domain CH63_2734 PF00460 Flagella basal body rod protein CH63_2734 PF07559 Flagellar basal body protein FlaE CH63_2734 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH63_2735 PF00460 Flagella basal body rod protein CH63_2735 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH63_2736 PF00460 Flagella basal body rod protein CH63_2736 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH63_2737 PF02107 Flagellar L-ring protein CH63_2738 PF02119 Flagellar P-ring protein CH63_274 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH63_274 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH63_2740 PF00460 Flagella basal body rod protein CH63_2740 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH63_2744 PF18500 CadC C-terminal domain 1 CH63_2744 PF00486 Transcriptional regulatory protein, C terminal CH63_2745 PF00669 Bacterial flagellin N-terminal helical region CH63_2745 PF00700 Bacterial flagellin C-terminal helical region CH63_2747 PF00665 Integrase core domain CH63_2747 PF13333 Integrase core domain CH63_2747 PF13276 HTH-like domain CH63_2748 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CH63_2748 PF00575 S1 RNA binding domain CH63_2748 PF00013 KH domain CH63_2748 PF01138 3' exoribonuclease family, domain 1 CH63_2748 PF03725 3' exoribonuclease family, domain 2 CH63_2749 PF07719 Tetratricopeptide repeat CH63_2749 PF13181 Tetratricopeptide repeat CH63_275 PF11739 Dicarboxylate transport CH63_2750 PF00271 Helicase conserved C-terminal domain CH63_2750 PF12343 Cold shock protein DEAD box A CH63_2750 PF00270 DEAD/DEAH box helicase CH63_2750 PF03880 DbpA RNA binding domain CH63_2752 PF01381 Helix-turn-helix CH63_2753 PF00296 Luciferase-like monooxygenase CH63_2757 PF00873 AcrB/AcrD/AcrF family CH63_2758 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH63_2758 PF02321 Outer membrane efflux protein CH63_276 PF13617 YnbE-like lipoprotein CH63_2762 PF13508 Acetyltransferase (GNAT) domain CH63_2763 PF01541 GIY-YIG catalytic domain CH63_2766 PF13416 Bacterial extracellular solute-binding protein CH63_2768 PF00528 Binding-protein-dependent transport system inner membrane component CH63_2769 PF17912 MalK OB fold domain CH63_2769 PF03459 TOBE domain CH63_2769 PF00005 ABC transporter CH63_277 PF07027 Protein of unknown function (DUF1318) CH63_2772 PF13460 NAD(P)H-binding CH63_2773 PF12706 Beta-lactamase superfamily domain CH63_2775 PF07969 Amidohydrolase family CH63_2776 PF00005 ABC transporter CH63_2777 PF00005 ABC transporter CH63_2778 PF06007 Phosphonate metabolism protein PhnJ CH63_2779 PF05861 Bacterial phosphonate metabolism protein (PhnI) CH63_278 PF08125 Mannitol dehydrogenase C-terminal domain CH63_278 PF01232 Mannitol dehydrogenase Rossmann domain CH63_2780 PF05845 Bacterial phosphonate metabolism protein (PhnH) CH63_2781 PF05845 Bacterial phosphonate metabolism protein (PhnH) CH63_2782 PF06754 Phosphonate metabolism protein PhnG CH63_2783 PF00392 Bacterial regulatory proteins, gntR family CH63_2783 PF07702 UTRA domain CH63_2786 PF13597 Anaerobic ribonucleoside-triphosphate reductase CH63_2786 PF03477 ATP cone domain CH63_2787 PF00005 ABC transporter CH63_2787 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH63_2788 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH63_2788 PF00005 ABC transporter CH63_2789 PF12911 N-terminal TM domain of oligopeptide transport permease C CH63_2789 PF00528 Binding-protein-dependent transport system inner membrane component CH63_279 PF00325 Bacterial regulatory proteins, crp family CH63_279 PF04198 Putative sugar-binding domain CH63_2790 PF00528 Binding-protein-dependent transport system inner membrane component CH63_2792 PF04074 YhcH/YjgK/YiaL CH63_2793 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH63_2793 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH63_2794 PF06877 Regulator of ribonuclease activity B CH63_2795 PF00583 Acetyltransferase (GNAT) family CH63_2796 PF08264 Anticodon-binding domain of tRNA CH63_2796 PF00133 tRNA synthetases class I (I, L, M and V) CH63_2796 PF10458 Valyl tRNA synthetase tRNA binding arm CH63_2797 PF04364 DNA polymerase III chi subunit, HolC CH63_2798 PF02789 Cytosol aminopeptidase family, N-terminal domain CH63_2798 PF00883 Cytosol aminopeptidase family, catalytic domain CH63_2799 PF03739 Lipopolysaccharide export system permease LptF/LptG CH63_28 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH63_280 PF02525 Flavodoxin-like fold CH63_2800 PF03739 Lipopolysaccharide export system permease LptF/LptG CH63_2802 PF00589 Phage integrase family CH63_2802 PF13356 Arm DNA-binding domain CH63_2804 PF08676 MutL C terminal dimerisation domain CH63_2804 PF01119 DNA mismatch repair protein, C-terminal domain CH63_2805 PF01695 IstB-like ATP binding protein CH63_2806 PF02796 Helix-turn-helix domain of resolvase CH63_2806 PF00665 Integrase core domain CH63_2808 PF03884 DNA gyrase inhibitor YacG CH63_2809 PF07072 Cell division protein CH63_281 PF00271 Helicase conserved C-terminal domain CH63_281 PF00270 DEAD/DEAH box helicase CH63_281 PF11898 Domain of unknown function (DUF3418) CH63_281 PF04408 Helicase associated domain (HA2) CH63_281 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CH63_2810 PF01121 Dephospho-CoA kinase CH63_2811 PF00478 IMP dehydrogenase / GMP reductase domain CH63_2812 PF00482 Type II secretion system (T2SS), protein F CH63_2813 PF00437 Type II/IV secretion system protein CH63_2813 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CH63_2814 PF07963 Prokaryotic N-terminal methylation motif CH63_2815 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CH63_2815 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CH63_2816 PF01510 N-acetylmuramoyl-L-alanine amidase CH63_2817 PF17113 Regulatory signalling modulator protein AmpE CH63_2818 PF17113 Regulatory signalling modulator protein AmpE CH63_2819 PF00324 Amino acid permease CH63_2820 PF00392 Bacterial regulatory proteins, gntR family CH63_2820 PF07729 FCD domain CH63_2821 PF00456 Transketolase, thiamine diphosphate binding domain CH63_2821 PF17831 Pyruvate dehydrogenase E1 component middle domain CH63_2822 PF02817 e3 binding domain CH63_2822 PF00364 Biotin-requiring enzyme CH63_2822 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH63_2823 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH63_2823 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH63_2824 PF01797 Transposase IS200 like CH63_2825 PF06434 Aconitate hydratase 2 N-terminus CH63_2825 PF11791 Aconitate B N-terminal domain CH63_2825 PF00330 Aconitase family (aconitate hydratase) CH63_2826 PF06062 Uncharacterised protein family (UPF0231) CH63_2827 PF00892 EamA-like transporter family CH63_2828 PF02675 S-adenosylmethionine decarboxylase CH63_2829 PF17284 Spermidine synthase tetramerisation domain CH63_2830 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) CH63_2831 PF00394 Multicopper oxidase CH63_2831 PF07731 Multicopper oxidase CH63_2831 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH63_2831 PF07732 Multicopper oxidase CH63_2832 PF00156 Phosphoribosyl transferase domain CH63_2833 PF00484 Carbonic anhydrase CH63_2834 PF00005 ABC transporter CH63_2835 PF01061 ABC-2 type transporter CH63_2837 PF01522 Polysaccharide deacetylase CH63_2838 PF02261 Aspartate decarboxylase CH63_2839 PF02569 Pantoate-beta-alanine ligase CH63_284 PF00089 Trypsin CH63_2840 PF02548 Ketopantoate hydroxymethyltransferase CH63_2841 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CH63_2842 PF12627 Probable RNA and SrmB- binding site of polymerase A CH63_2842 PF12626 Polymerase A arginine-rich C-terminus CH63_2842 PF01743 Poly A polymerase head domain CH63_2843 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH63_2844 PF01258 Prokaryotic dksA/traR C4-type zinc finger CH63_2845 PF17746 SfsA N-terminal OB domain CH63_2845 PF03749 Sugar fermentation stimulation protein RE domain CH63_2846 PF02834 LigT like Phosphoesterase CH63_2847 PF00270 DEAD/DEAH box helicase CH63_2847 PF04408 Helicase associated domain (HA2) CH63_2847 PF00271 Helicase conserved C-terminal domain CH63_2847 PF08482 ATP-dependent helicase C-terminal CH63_2848 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal CH63_2848 PF14814 Bifunctional transglycosylase second domain CH63_2848 PF00912 Transglycosylase CH63_2848 PF00905 Penicillin binding protein transpeptidase domain CH63_2849 PF00005 ABC transporter CH63_2850 PF01497 Periplasmic binding protein CH63_2851 PF01032 FecCD transport family CH63_2852 PF00202 Aminotransferase class-III CH63_2853 PF00654 Voltage gated chloride channel CH63_2854 PF01521 Iron-sulphur cluster biosynthesis CH63_2855 PF03458 UPF0126 domain CH63_2856 PF01497 Periplasmic binding protein CH63_2857 PF01048 Phosphorylase superfamily CH63_2858 PF01966 HD domain CH63_2858 PF13286 Phosphohydrolase-associated domain CH63_2859 PF00595 PDZ domain CH63_286 PF01292 Prokaryotic cytochrome b561 CH63_2860 PF00072 Response regulator receiver domain CH63_2860 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH63_2860 PF00672 HAMP domain CH63_2860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH63_2860 PF00512 His Kinase A (phospho-acceptor) domain CH63_2860 PF01627 Hpt domain CH63_2861 PF02824 TGS domain CH63_2861 PF13291 ACT domain CH63_2861 PF04607 Region found in RelA / SpoT proteins CH63_2862 PF03819 MazG nucleotide pyrophosphohydrolase domain CH63_2863 PF00117 Glutamine amidotransferase class-I CH63_2863 PF06418 CTP synthase N-terminus CH63_2864 PF03952 Enolase, N-terminal domain CH63_2864 PF00113 Enolase, C-terminal TIM barrel domain CH63_2865 PF00080 Copper/zinc superoxide dismutase (SODC) CH63_2866 PF04055 Radical SAM superfamily CH63_2867 PF01242 6-pyruvoyl tetrahydropterin synthase CH63_2868 PF00667 FAD binding domain CH63_2868 PF00258 Flavodoxin CH63_2868 PF00175 Oxidoreductase NAD-binding domain CH63_2869 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH63_2869 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH63_2870 PF01507 Phosphoadenosine phosphosulfate reductase family CH63_2871 PF01507 Phosphoadenosine phosphosulfate reductase family CH63_2875 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH63_2875 PF10414 Sirohaem synthase dimerisation region CH63_2875 PF14824 Sirohaem biosynthesis protein central CH63_2876 PF01507 Phosphoadenosine phosphosulfate reductase family CH63_2877 PF00009 Elongation factor Tu GTP binding domain CH63_2879 PF12084 Protein of unknown function (DUF3561) CH63_288 PF14431 YwqJ-like deaminase CH63_288 PF18807 Tripartite Tc toxins repeat CH63_2880 PF04977 Septum formation initiator CH63_2881 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CH63_2882 PF02542 YgbB family CH63_2883 PF01142 tRNA pseudouridine synthase D (TruD) CH63_2884 PF01975 Survival protein SurE CH63_2886 PF01476 LysM domain CH63_2886 PF01551 Peptidase family M23 CH63_2887 PF00140 Sigma-70 factor, region 1.2 CH63_2887 PF04542 Sigma-70 region 2 CH63_2887 PF04539 Sigma-70 region 3 CH63_2887 PF04545 Sigma-70, region 4 CH63_2888 PF00488 MutS domain V CH63_2888 PF05190 MutS family domain IV CH63_2888 PF05192 MutS domain III CH63_2888 PF05188 MutS domain II CH63_2888 PF01624 MutS domain I CH63_2889 PF02502 Ribose/Galactose Isomerase CH63_2890 PF00107 Zinc-binding dehydrogenase CH63_2890 PF08240 Alcohol dehydrogenase GroES-like domain CH63_2892 PF02733 Dak1 domain CH63_2893 PF02734 DAK2 domain CH63_2894 PF04198 Putative sugar-binding domain CH63_2894 PF13936 Helix-turn-helix domain CH63_2895 PF02040 Arsenical pump membrane protein CH63_2896 PF01022 Bacterial regulatory protein, arsR family CH63_2899 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH63_29 PF03692 Putative zinc- or iron-chelating domain CH63_290 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CH63_2900 PF14376 Haem-binding domain CH63_2900 PF00034 Cytochrome c CH63_2900 PF03150 Di-haem cytochrome c peroxidase CH63_2902 PF07715 TonB-dependent Receptor Plug Domain CH63_2902 PF00593 TonB dependent receptor CH63_2904 PF00557 Metallopeptidase family M24 CH63_2906 PF05681 Fumarate hydratase (Fumerase) CH63_2906 PF05683 Fumarase C-terminus CH63_2907 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH63_2907 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH63_2908 PF01261 Xylose isomerase-like TIM barrel CH63_2909 PF02653 Branched-chain amino acid transport system / permease component CH63_291 PF00512 His Kinase A (phospho-acceptor) domain CH63_291 PF00672 HAMP domain CH63_291 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH63_2910 PF02653 Branched-chain amino acid transport system / permease component CH63_2911 PF00005 ABC transporter CH63_2912 PF01797 Transposase IS200 like CH63_2914 PF00455 DeoR C terminal sensor domain CH63_2914 PF08220 DeoR-like helix-turn-helix domain CH63_2915 PF00596 Class II Aldolase and Adducin N-terminal domain CH63_2916 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH63_2916 PF00384 Molybdopterin oxidoreductase CH63_2916 PF01568 Molydopterin dinucleotide binding domain CH63_2917 PF13247 4Fe-4S dicluster domain CH63_2917 PF12800 4Fe-4S binding domain CH63_2918 PF04976 DMSO reductase anchor subunit (DmsC) CH63_2919 PF02613 Nitrate reductase delta subunit CH63_292 PF00486 Transcriptional regulatory protein, C terminal CH63_292 PF00072 Response regulator receiver domain CH63_2920 PF01292 Prokaryotic cytochrome b561 CH63_2921 PF07361 Cytochrome b562 CH63_2922 PF00141 Peroxidase CH63_2925 PF00005 ABC transporter CH63_2926 PF02653 Branched-chain amino acid transport system / permease component CH63_2927 PF00456 Transketolase, thiamine diphosphate binding domain CH63_2928 PF02780 Transketolase, C-terminal domain CH63_2928 PF02779 Transketolase, pyrimidine binding domain CH63_2929 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH63_2929 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH63_2932 PF07690 Major Facilitator Superfamily CH63_2933 PF02464 Competence-damaged protein CH63_2934 PF00154 recA bacterial DNA recombination protein CH63_2935 PF02631 RecX family CH63_2936 PF02272 DHHA1 domain CH63_2936 PF01411 tRNA synthetases class II (A) CH63_2936 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH63_2937 PF02599 Global regulator protein family CH63_294 PF13520 Amino acid permease CH63_2942 PF13419 Haloacid dehalogenase-like hydrolase CH63_2943 PF09335 SNARE associated Golgi protein CH63_2944 PF04262 Glutamate-cysteine ligase CH63_2945 PF02664 S-Ribosylhomocysteinase (LuxS) CH63_2947 PF00571 CBS domain CH63_2947 PF03471 Transporter associated domain CH63_2947 PF01595 Cyclin M transmembrane N-terminal domain CH63_2948 PF01578 Cytochrome C assembly protein CH63_2949 PF02978 Signal peptide binding domain CH63_2949 PF02881 SRP54-type protein, helical bundle domain CH63_2949 PF00448 SRP54-type protein, GTPase domain CH63_295 PF07338 Protein of unknown function (DUF1471) CH63_2950 PF00886 Ribosomal protein S16 CH63_2951 PF01782 RimM N-terminal domain CH63_2951 PF05239 PRC-barrel domain CH63_2952 PF01746 tRNA (Guanine-1)-methyltransferase CH63_2953 PF01245 Ribosomal protein L19 CH63_2954 PF01797 Transposase IS200 like CH63_2955 PF04338 Protein of unknown function, DUF481 CH63_2956 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH63_2957 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH63_2958 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH63_2959 PF04397 LytTr DNA-binding domain CH63_2959 PF00072 Response regulator receiver domain CH63_296 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CH63_296 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CH63_296 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CH63_2960 PF00793 DAHP synthetase I family CH63_2961 PF01817 Chorismate mutase type II CH63_2961 PF02153 Prephenate dehydrogenase CH63_2962 PF00800 Prephenate dehydratase CH63_2962 PF01817 Chorismate mutase type II CH63_2963 PF01695 IstB-like ATP binding protein CH63_2964 PF02796 Helix-turn-helix domain of resolvase CH63_2964 PF00665 Integrase core domain CH63_2965 PF00665 Integrase core domain CH63_2965 PF02796 Helix-turn-helix domain of resolvase CH63_2966 PF01817 Chorismate mutase type II CH63_2966 PF00800 Prephenate dehydratase CH63_2967 PF01797 Transposase IS200 like CH63_2968 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH63_2969 PF13525 Outer membrane lipoprotein CH63_297 PF02233 NAD(P) transhydrogenase beta subunit CH63_2970 PF01479 S4 domain CH63_2970 PF00849 RNA pseudouridylate synthase CH63_2972 PF07724 AAA domain (Cdc48 subfamily) CH63_2972 PF17871 AAA lid domain CH63_2972 PF00004 ATPase family associated with various cellular activities (AAA) CH63_2972 PF10431 C-terminal, D2-small domain, of ClpB protein CH63_2972 PF02861 Clp amino terminal domain, pathogenicity island component CH63_2979 PF10043 Predicted periplasmic lipoprotein (DUF2279) CH63_298 PF00582 Universal stress protein family CH63_2980 PF13091 PLD-like domain CH63_2981 PF13607 Succinyl-CoA ligase like flavodoxin domain CH63_2981 PF00583 Acetyltransferase (GNAT) family CH63_2981 PF13380 CoA binding domain CH63_2983 PF00085 Thioredoxin CH63_2984 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH63_2984 PF00588 SpoU rRNA Methylase family CH63_2985 PF07690 Major Facilitator Superfamily CH63_2986 PF00529 HlyD membrane-fusion protein of T1SS CH63_2986 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH63_2987 PF01047 MarR family CH63_2988 PF05437 Branched-chain amino acid transport protein (AzlD) CH63_2989 PF03591 AzlC protein CH63_299 PF13545 Crp-like helix-turn-helix domain CH63_299 PF00027 Cyclic nucleotide-binding domain CH63_2990 PF07690 Major Facilitator Superfamily CH63_2992 PF01425 Amidase CH63_2995 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH63_2996 PF00528 Binding-protein-dependent transport system inner membrane component CH63_2998 PF00005 ABC transporter CH63_2999 PF00266 Aminotransferase class-V CH63_3 PF05496 Holliday junction DNA helicase RuvB P-loop domain CH63_3 PF17864 RuvB AAA lid domain CH63_3 PF05491 RuvB C-terminal winged helix domain CH63_30 PF12167 Arm DNA-binding domain CH63_30 PF00589 Phage integrase family CH63_300 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH63_300 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH63_3000 PF07687 Peptidase dimerisation domain CH63_3000 PF01546 Peptidase family M20/M25/M40 CH63_3003 PF05860 haemagglutination activity domain CH63_3005 PF18071 HMW1C N-terminal CH63_3005 PF18254 HMW1 domain 2 CH63_3007 PF09317 Domain of unknown function (DUF1974) CH63_3007 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH63_3007 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH63_3008 PF13580 SIS domain CH63_3009 PF03734 L,D-transpeptidase catalytic domain CH63_301 PF00245 Alkaline phosphatase CH63_3010 PF13230 Glutamine amidotransferases class-II CH63_3011 PF11973 NQRA C-terminal domain CH63_3011 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CH63_3012 PF03116 NQR2, RnfD, RnfE family CH63_3013 PF04205 FMN-binding domain CH63_3014 PF02508 Rnf-Nqr subunit, membrane protein CH63_3015 PF02508 Rnf-Nqr subunit, membrane protein CH63_3016 PF00970 Oxidoreductase FAD-binding domain CH63_3016 PF00175 Oxidoreductase NAD-binding domain CH63_3016 PF00111 2Fe-2S iron-sulfur cluster binding domain CH63_3017 PF02424 ApbE family CH63_3019 PF03009 Glycerophosphoryl diester phosphodiesterase family CH63_3020 PF11798 IMS family HHH motif CH63_3020 PF00817 impB/mucB/samB family CH63_3020 PF11799 impB/mucB/samB family C-terminal domain CH63_3021 PF07687 Peptidase dimerisation domain CH63_3021 PF01546 Peptidase family M20/M25/M40 CH63_3023 PF01797 Transposase IS200 like CH63_3026 PF00156 Phosphoribosyl transferase domain CH63_3028 PF07417 Sigma factor-binding transcriptional regulator Crl CH63_3029 PF00696 Amino acid kinase family CH63_3029 PF01472 PUA domain CH63_303 PF13419 Haloacid dehalogenase-like hydrolase CH63_3030 PF00171 Aldehyde dehydrogenase family CH63_3031 PF01797 Transposase IS200 like CH63_3032 PF07238 PilZ domain CH63_3032 PF07317 Flagellar regulator YcgR CH63_3034 PF08241 Methyltransferase domain CH63_3036 PF01202 Shikimate kinase CH63_3037 PF06865 Pyrimidine/purine nucleoside phosphorylase CH63_3038 PF04381 Putative exonuclease, RdgC CH63_3039 PF00665 Integrase core domain CH63_3039 PF02796 Helix-turn-helix domain of resolvase CH63_304 PF01842 ACT domain CH63_3040 PF01695 IstB-like ATP binding protein CH63_3041 PF01695 IstB-like ATP binding protein CH63_3042 PF00480 ROK family CH63_3043 PF13476 AAA domain CH63_3044 PF00149 Calcineurin-like phosphoesterase CH63_3044 PF12320 Type 5 capsule protein repressor C-terminal domain CH63_3045 PF00072 Response regulator receiver domain CH63_3045 PF00486 Transcriptional regulatory protein, C terminal CH63_3046 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH63_3046 PF00989 PAS fold CH63_3046 PF11808 Phosphate regulon sensor protein PhoR CH63_3046 PF00512 His Kinase A (phospho-acceptor) domain CH63_3047 PF12849 PBP superfamily domain CH63_3048 PF05525 Branched-chain amino acid transport protein CH63_3049 PF00324 Amino acid permease CH63_3050 PF02903 Alpha amylase, N-terminal ig-like domain CH63_3050 PF00128 Alpha amylase, catalytic domain CH63_3054 PF00578 AhpC/TSA family CH63_3054 PF10417 C-terminal domain of 1-Cys peroxiredoxin CH63_3055 PF04336 Acyl carrier protein phosphodiesterase CH63_3056 PF02547 Queuosine biosynthesis protein CH63_3057 PF01702 Queuine tRNA-ribosyltransferase CH63_3058 PF02699 Preprotein translocase subunit CH63_3059 PF13721 SecD export protein N-terminal TM region CH63_3059 PF07549 SecD/SecF GG Motif CH63_3059 PF02355 Protein export membrane protein CH63_3060 PF07549 SecD/SecF GG Motif CH63_3060 PF02355 Protein export membrane protein CH63_3064 PF03477 ATP cone domain CH63_3065 PF01872 RibD C-terminal domain CH63_3065 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH63_3066 PF00885 6,7-dimethyl-8-ribityllumazine synthase CH63_3067 PF01029 NusB family CH63_3068 PF02769 AIR synthase related protein, C-terminal domain CH63_3068 PF00586 AIR synthase related protein, N-terminal domain CH63_3069 PF04608 Phosphatidylglycerophosphatase A CH63_3071 PF02780 Transketolase, C-terminal domain CH63_3071 PF02779 Transketolase, pyrimidine binding domain CH63_3071 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CH63_3072 PF00348 Polyprenyl synthetase CH63_3073 PF02609 Exonuclease VII small subunit CH63_3074 PF02926 THUMP domain CH63_3074 PF02568 Thiamine biosynthesis protein (ThiI) CH63_3075 PF01965 DJ-1/PfpI family CH63_3076 PF02558 Ketopantoate reductase PanE/ApbA CH63_3076 PF08546 Ketopantoate reductase PanE/ApbA C terminal CH63_3077 PF04461 Protein of unknown function (DUF520) CH63_3078 PF07690 Major Facilitator Superfamily CH63_3079 PF01040 UbiA prenyltransferase family CH63_3080 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CH63_3081 PF00510 Cytochrome c oxidase subunit III CH63_3082 PF00115 Cytochrome C and Quinol oxidase polypeptide I CH63_3083 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CH63_3083 PF06481 COX Aromatic Rich Motif CH63_3086 PF07690 Major Facilitator Superfamily CH63_3087 PF03923 Uncharacterized lipoprotein CH63_3087 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH63_3088 PF01722 BolA-like protein CH63_3090 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH63_3090 PF05698 Bacterial trigger factor protein (TF) C-terminus CH63_3090 PF05697 Bacterial trigger factor protein (TF) CH63_3091 PF00574 Clp protease CH63_3092 PF10431 C-terminal, D2-small domain, of ClpB protein CH63_3092 PF07724 AAA domain (Cdc48 subfamily) CH63_3092 PF06689 ClpX C4-type zinc finger CH63_3093 PF05362 Lon protease (S16) C-terminal proteolytic domain CH63_3093 PF02190 ATP-dependent protease La (LON) substrate-binding domain CH63_3093 PF00004 ATPase family associated with various cellular activities (AAA) CH63_3094 PF00216 Bacterial DNA-binding protein CH63_3095 PF13145 PPIC-type PPIASE domain CH63_3098 PF06508 Queuosine biosynthesis protein QueC CH63_3099 PF12793 Sugar transport-related sRNA regulator N-term CH63_3099 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH63_31 PF00665 Integrase core domain CH63_31 PF02796 Helix-turn-helix domain of resolvase CH63_3101 PF00291 Pyridoxal-phosphate dependent enzyme CH63_3102 PF13404 AsnC-type helix-turn-helix domain CH63_3102 PF01037 Lrp/AsnC ligand binding domain CH63_3103 PF00005 ABC transporter CH63_3103 PF00664 ABC transporter transmembrane region CH63_3104 PF00664 ABC transporter transmembrane region CH63_3104 PF00005 ABC transporter CH63_3105 PF00543 Nitrogen regulatory protein P-II CH63_3106 PF00909 Ammonium Transporter Family CH63_3108 PF09619 Type III secretion system lipoprotein chaperone (YscW) CH63_3109 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH63_3110 PF05321 Haemolysin expression modulating protein CH63_3111 PF10757 Biofilm formation regulator YbaJ CH63_3113 PF00444 Ribosomal protein L36 CH63_3114 PF01197 Ribosomal protein L31 CH63_3115 PF00873 AcrB/AcrD/AcrF family CH63_3116 PF00529 HlyD membrane-fusion protein of T1SS CH63_3116 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH63_3117 PF08361 MAATS-type transcriptional repressor, C-terminal region CH63_3117 PF00440 Bacterial regulatory proteins, tetR family CH63_3118 PF02635 DsrE/DsrF-like family CH63_3119 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH63_3119 PF00924 Mechanosensitive ion channel CH63_3119 PF12795 Mechanosensitive ion channel porin domain CH63_312 PF01048 Phosphorylase superfamily CH63_312 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CH63_3121 PF04304 Protein of unknown function (DUF454) CH63_3122 PF00156 Phosphoribosyl transferase domain CH63_3123 PF12169 DNA polymerase III subunits gamma and tau domain III CH63_3123 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CH63_3123 PF12170 DNA polymerase III tau subunit V interacting with alpha CH63_3124 PF02575 YbaB/EbfC DNA-binding family CH63_3125 PF02132 RecR protein CH63_3125 PF13662 Toprim domain CH63_3126 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH63_3126 PF00183 Hsp90 protein CH63_3127 PF05191 Adenylate kinase, active site lid CH63_3128 PF00762 Ferrochelatase CH63_3129 PF00175 Oxidoreductase NAD-binding domain CH63_3129 PF00111 2Fe-2S iron-sulfur cluster binding domain CH63_3129 PF00970 Oxidoreductase FAD-binding domain CH63_313 PF00005 ABC transporter CH63_3130 PF00111 2Fe-2S iron-sulfur cluster binding domain CH63_3130 PF00970 Oxidoreductase FAD-binding domain CH63_3130 PF00175 Oxidoreductase NAD-binding domain CH63_3131 PF00483 Nucleotidyl transferase CH63_3132 PF16363 GDP-mannose 4,6 dehydratase CH63_3133 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH63_3134 PF01370 NAD dependent epimerase/dehydratase family CH63_314 PF00528 Binding-protein-dependent transport system inner membrane component CH63_3142 PF13439 Glycosyltransferase Family 4 CH63_3142 PF00534 Glycosyl transferases group 1 CH63_3143 PF16363 GDP-mannose 4,6 dehydratase CH63_3144 PF16363 GDP-mannose 4,6 dehydratase CH63_3145 PF01370 NAD dependent epimerase/dehydratase family CH63_3146 PF00483 Nucleotidyl transferase CH63_3146 PF01050 Mannose-6-phosphate isomerase CH63_3147 PF00535 Glycosyl transferase family 2 CH63_3148 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH63_3148 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH63_3148 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH63_3148 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH63_3149 PF02706 Chain length determinant protein CH63_315 PF09084 NMT1/THI5 like CH63_3150 PF00294 pfkB family carbohydrate kinase CH63_3151 PF02254 TrkA-N domain CH63_3151 PF00999 Sodium/hydrogen exchanger family CH63_3152 PF07690 Major Facilitator Superfamily CH63_3153 PF02872 5'-nucleotidase, C-terminal domain CH63_3153 PF00149 Calcineurin-like phosphoesterase CH63_3156 PF00149 Calcineurin-like phosphoesterase CH63_3156 PF02872 5'-nucleotidase, C-terminal domain CH63_3159 PF04073 Aminoacyl-tRNA editing domain CH63_316 PF13407 Periplasmic binding protein domain CH63_3160 PF01963 TraB family CH63_3161 PF00403 Heavy-metal-associated domain CH63_3162 PF13411 MerR HTH family regulatory protein CH63_3163 PF01957 NfeD-like C-terminal, partner-binding CH63_3164 PF01145 SPFH domain / Band 7 family CH63_3164 PF16200 C-terminal region of band_7 CH63_3165 PF00085 Thioredoxin CH63_3166 PF00106 short chain dehydrogenase CH63_3167 PF13472 GDSL-like Lipase/Acylhydrolase family CH63_3168 PF00005 ABC transporter CH63_3170 PF02222 ATP-grasp domain CH63_3170 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CH63_3171 PF00731 AIR carboxylase CH63_3172 PF00149 Calcineurin-like phosphoesterase CH63_3173 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH63_3174 PF01406 tRNA synthetases class I (C) catalytic domain CH63_3174 PF09190 DALR domain CH63_3176 PF01797 Transposase IS200 like CH63_3178 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CH63_3178 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CH63_318 PF00356 Bacterial regulatory proteins, lacI family CH63_3185 PF01066 CDP-alcohol phosphatidyltransferase CH63_3187 PF01553 Acyltransferase CH63_3188 PF12146 Serine aminopeptidase, S33 CH63_3188 PF12147 Putative methyltransferase CH63_3189 PF00782 Dual specificity phosphatase, catalytic domain CH63_319 PF00654 Voltage gated chloride channel CH63_3192 PF01695 IstB-like ATP binding protein CH63_3194 PF00665 Integrase core domain CH63_3194 PF02796 Helix-turn-helix domain of resolvase CH63_3195 PF03466 LysR substrate binding domain CH63_3195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_3196 PF00248 Aldo/keto reductase family CH63_3197 PF00248 Aldo/keto reductase family CH63_32 PF01695 IstB-like ATP binding protein CH63_3202 PF00872 Transposase, Mutator family CH63_3203 PF08007 Cupin superfamily protein CH63_3205 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH63_3205 PF03212 Pertactin CH63_3205 PF13018 Extended Signal Peptide of Type V secretion system CH63_3205 PF03797 Autotransporter beta-domain CH63_3208 PF05638 Type VI secretion system effector, Hcp CH63_3214 PF13693 Winged helix-turn-helix DNA-binding CH63_3215 PF00912 Transglycosylase CH63_3215 PF06832 Penicillin-Binding Protein C-terminus Family CH63_3215 PF00905 Penicillin binding protein transpeptidase domain CH63_3217 PF01797 Transposase IS200 like CH63_3218 PF07703 Alpha-2-macroglobulin bait region domain CH63_3218 PF01835 MG2 domain CH63_3218 PF17962 Bacterial macroglobulin domain 6 CH63_3218 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CH63_3218 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CH63_3218 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CH63_3218 PF00207 Alpha-2-macroglobulin family CH63_322 PF00480 ROK family CH63_3223 PF00171 Aldehyde dehydrogenase family CH63_3224 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH63_3224 PF00205 Thiamine pyrophosphate enzyme, central domain CH63_3224 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH63_3225 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH63_3225 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH63_3226 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH63_3226 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH63_3227 PF13407 Periplasmic binding protein domain CH63_3228 PF00005 ABC transporter CH63_3229 PF02653 Branched-chain amino acid transport system / permease component CH63_323 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_323 PF03466 LysR substrate binding domain CH63_3230 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH63_3230 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH63_3231 PF00294 pfkB family carbohydrate kinase CH63_3232 PF01261 Xylose isomerase-like TIM barrel CH63_3233 PF04962 KduI/IolB family CH63_3235 PF00005 ABC transporter CH63_3235 PF00664 ABC transporter transmembrane region CH63_324 PF07690 Major Facilitator Superfamily CH63_3240 PF00196 Bacterial regulatory proteins, luxR family CH63_3241 PF00313 'Cold-shock' DNA-binding domain CH63_3242 PF00313 'Cold-shock' DNA-binding domain CH63_3243 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH63_3244 PF02416 mttA/Hcf106 family CH63_3245 PF04055 Radical SAM superfamily CH63_3245 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CH63_3246 PF03099 Biotin/lipoate A/B protein ligase family CH63_3247 PF04359 Protein of unknown function (DUF493) CH63_3248 PF00768 D-alanyl-D-alanine carboxypeptidase CH63_3248 PF07943 Penicillin-binding protein 5, C-terminal domain CH63_3249 PF03330 Lytic transglycolase CH63_3249 PF05036 Sporulation related domain CH63_325 PF05472 DNA replication terminus site-binding protein (Ter protein) CH63_3250 PF01098 Cell cycle protein CH63_3251 PF00905 Penicillin binding protein transpeptidase domain CH63_3251 PF03717 Penicillin-binding Protein dimerisation domain CH63_3252 PF02590 Predicted SPOUT methyltransferase CH63_3254 PF01467 Cytidylyltransferase-like CH63_3255 PF06144 DNA polymerase III, delta subunit CH63_3255 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CH63_3256 PF04390 Lipopolysaccharide-assembly CH63_3257 PF00133 tRNA synthetases class I (I, L, M and V) CH63_3257 PF13603 Leucyl-tRNA synthetase, Domain 2 CH63_3257 PF08264 Anticodon-binding domain of tRNA CH63_3258 PF07295 Zinc-ribbon containing domain CH63_3259 PF00005 ABC transporter CH63_326 PF00206 Lyase CH63_326 PF10415 Fumarase C C-terminus CH63_3260 PF00528 Binding-protein-dependent transport system inner membrane component CH63_3261 PF00528 Binding-protein-dependent transport system inner membrane component CH63_3262 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH63_3263 PF00795 Carbon-nitrogen hydrolase CH63_3264 PF00571 CBS domain CH63_3264 PF03471 Transporter associated domain CH63_3265 PF02130 Uncharacterized protein family UPF0054 CH63_3266 PF02562 PhoH-like protein CH63_3267 PF01938 TRAM domain CH63_3267 PF00919 Uncharacterized protein family UPF0004 CH63_3267 PF04055 Radical SAM superfamily CH63_3268 PF01494 FAD binding domain CH63_327 PF01238 Phosphomannose isomerase type I CH63_3275 PF13537 Glutamine amidotransferase domain CH63_3275 PF00733 Asparagine synthase CH63_3276 PF13344 Haloacid dehalogenase-like hydrolase CH63_3277 PF00480 ROK family CH63_3277 PF01047 MarR family CH63_3278 PF01979 Amidohydrolase family CH63_3279 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CH63_328 PF06097 Bacterial protein of unknown function (DUF945) CH63_3280 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH63_3280 PF00367 phosphotransferase system, EIIB CH63_3280 PF02378 Phosphotransferase system, EIIC CH63_3281 PF01797 Transposase IS200 like CH63_3283 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CH63_3283 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH63_3284 PF03573 outer membrane porin, OprD family CH63_3285 PF02838 Glycosyl hydrolase family 20, domain 2 CH63_3285 PF00728 Glycosyl hydrolase family 20, catalytic domain CH63_3285 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CH63_3285 PF03173 Putative carbohydrate binding domain CH63_3286 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CH63_3286 PF02838 Glycosyl hydrolase family 20, domain 2 CH63_3286 PF00728 Glycosyl hydrolase family 20, catalytic domain CH63_3286 PF03173 Putative carbohydrate binding domain CH63_3287 PF01475 Ferric uptake regulator family CH63_3288 PF00258 Flavodoxin CH63_3289 PF01402 Ribbon-helix-helix protein, copG family CH63_3291 PF12697 Alpha/beta hydrolase family CH63_3293 PF01527 Transposase CH63_3294 PF00589 Phage integrase family CH63_3294 PF13356 Arm DNA-binding domain CH63_3295 PF01695 IstB-like ATP binding protein CH63_3296 PF00665 Integrase core domain CH63_3296 PF02796 Helix-turn-helix domain of resolvase CH63_3298 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH63_3299 PF00528 Binding-protein-dependent transport system inner membrane component CH63_330 PF13593 SBF-like CPA transporter family (DUF4137) CH63_3300 PF00571 CBS domain CH63_3300 PF00005 ABC transporter CH63_3301 PF00268 Ribonucleotide reductase, small chain CH63_3302 PF02867 Ribonucleotide reductase, barrel domain CH63_3302 PF00317 Ribonucleotide reductase, all-alpha domain CH63_3302 PF08343 Ribonucleotide reductase N-terminal CH63_3303 PF07972 NrdI Flavodoxin like CH63_3305 PF06392 Acid shock protein repeat CH63_3306 PF09400 Protein of unknown function (DUF2002) CH63_3307 PF06711 Protein of unknown function (DUF1198) CH63_3309 PF00313 'Cold-shock' DNA-binding domain CH63_331 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH63_331 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH63_3310 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH63_3311 PF00528 Binding-protein-dependent transport system inner membrane component CH63_3312 PF00528 Binding-protein-dependent transport system inner membrane component CH63_3312 PF12911 N-terminal TM domain of oligopeptide transport permease C CH63_3313 PF00005 ABC transporter CH63_3314 PF00005 ABC transporter CH63_3316 PF00547 Urease, gamma subunit CH63_3317 PF00699 Urease beta subunit CH63_3318 PF00449 Urease alpha-subunit, N-terminal domain CH63_3318 PF01979 Amidohydrolase family CH63_3319 PF05194 UreE urease accessory protein, C-terminal domain CH63_3319 PF02814 UreE urease accessory protein, N-terminal domain CH63_332 PF12833 Helix-turn-helix domain CH63_332 PF02311 AraC-like ligand binding domain CH63_3320 PF01730 UreF CH63_3321 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH63_3322 PF01774 UreD urease accessory protein CH63_3323 PF03253 Urea transporter CH63_3324 PF03824 High-affinity nickel-transport protein CH63_3325 PF06411 HdeA/HdeB family CH63_3326 PF02254 TrkA-N domain CH63_3326 PF07885 Ion channel CH63_3327 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH63_3328 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH63_3329 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH63_333 PF02653 Branched-chain amino acid transport system / permease component CH63_3330 PF02378 Phosphotransferase system, EIIC CH63_3331 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH63_3332 PF12833 Helix-turn-helix domain CH63_3332 PF07883 Cupin domain CH63_3333 PF04794 YdjC-like protein CH63_3336 PF03925 SeqA protein C-terminal domain CH63_3336 PF17206 SeqA protein N-terminal domain CH63_3337 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH63_3337 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH63_3337 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH63_3337 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH63_334 PF00005 ABC transporter CH63_3341 PF00072 Response regulator receiver domain CH63_3341 PF00486 Transcriptional regulatory protein, C terminal CH63_3342 PF02702 Osmosensitive K+ channel His kinase sensor domain CH63_3342 PF13493 Domain of unknown function (DUF4118) CH63_3342 PF13492 GAF domain CH63_3342 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH63_3342 PF00512 His Kinase A (phospho-acceptor) domain CH63_3343 PF02669 K+-transporting ATPase, c chain CH63_3345 PF03814 Potassium-transporting ATPase A subunit CH63_3346 PF10725 Protein of unknown function (DUF2517) CH63_3347 PF08349 Protein of unknown function (DUF1722) CH63_3348 PF03441 FAD binding domain of DNA photolyase CH63_3348 PF00875 DNA photolyase CH63_3349 PF02112 cAMP phosphodiesterases class-II CH63_335 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH63_3350 PF01784 NIF3 (NGG1p interacting factor 3) CH63_3352 PF02682 Carboxyltransferase domain, subdomain C and D CH63_3353 PF02626 Carboxyltransferase domain, subdomain A and B CH63_3358 PF01470 Pyroglutamyl peptidase CH63_336 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH63_3361 PF01228 Glycine radical CH63_3364 PF12796 Ankyrin repeats (3 copies) CH63_3366 PF00271 Helicase conserved C-terminal domain CH63_3366 PF00270 DEAD/DEAH box helicase CH63_3367 PF05175 Methyltransferase small domain CH63_3368 PF00890 FAD binding domain CH63_3368 PF02910 Fumarate reductase flavoprotein C-term CH63_3369 PF04542 Sigma-70 region 2 CH63_3369 PF08281 Sigma-70, region 4 CH63_337 PF02610 L-arabinose isomerase CH63_337 PF11762 L-arabinose isomerase C-terminal domain CH63_3370 PF03872 Anti sigma-E protein RseA, N-terminal domain CH63_3370 PF03873 Anti sigma-E protein RseA, C-terminal domain CH63_3371 PF03888 MucB/RseB N-terminal domain CH63_3371 PF17188 MucB/RseB C-terminal domain CH63_3374 PF00009 Elongation factor Tu GTP binding domain CH63_3374 PF00679 Elongation factor G C-terminus CH63_3374 PF03144 Elongation factor Tu domain 2 CH63_3374 PF06421 GTP-binding protein LepA C-terminus CH63_3375 PF10502 Signal peptidase, peptidase S26 CH63_3376 PF14622 Ribonuclease-III-like CH63_3376 PF00035 Double-stranded RNA binding motif CH63_3377 PF07650 KH domain CH63_3377 PF01926 50S ribosome-binding GTPase CH63_3378 PF02565 Recombination protein O C terminal CH63_3378 PF11967 Recombination protein O N terminal CH63_3379 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CH63_3380 PF01648 4'-phosphopantetheinyl transferase superfamily CH63_3381 PF01797 Transposase IS200 like CH63_3382 PF12838 4Fe-4S dicluster domain CH63_3383 PF01418 Helix-turn-helix domain, rpiR family CH63_3383 PF01380 SIS domain CH63_3387 PF14437 MafB19-like deaminase CH63_3388 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH63_3388 PF01464 Transglycosylase SLT domain CH63_3389 PF02769 AIR synthase related protein, C-terminal domain CH63_3389 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CH63_3389 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CH63_339 PF03412 Peptidase C39 family CH63_339 PF00005 ABC transporter CH63_339 PF00664 ABC transporter transmembrane region CH63_3394 PF00512 His Kinase A (phospho-acceptor) domain CH63_3394 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH63_3395 PF13942 YfhG lipoprotein CH63_3396 PF00072 Response regulator receiver domain CH63_3396 PF00158 Sigma-54 interaction domain CH63_3397 PF00795 Carbon-nitrogen hydrolase CH63_3397 PF02540 NAD synthase CH63_3398 PF00543 Nitrogen regulatory protein P-II CH63_3399 PF14503 YhfZ C-terminal domain CH63_3399 PF14502 Helix-turn-helix domain CH63_3400 PF00970 Oxidoreductase FAD-binding domain CH63_3400 PF00175 Oxidoreductase NAD-binding domain CH63_3400 PF00042 Globin CH63_3401 PF00464 Serine hydroxymethyltransferase CH63_3402 PF13505 Outer membrane protein beta-barrel domain CH63_3403 PF00874 PRD domain CH63_3404 PF12832 MFS_1 like family CH63_3405 PF06226 Protein of unknown function (DUF1007) CH63_3406 PF03824 High-affinity nickel-transport protein CH63_3407 PF01797 Transposase IS200 like CH63_3408 PF00459 Inositol monophosphatase family CH63_3409 PF00588 SpoU rRNA Methylase family CH63_341 PF13533 Biotin-lipoyl like CH63_3410 PF02082 Transcriptional regulator CH63_3411 PF00266 Aminotransferase class-V CH63_3412 PF01592 NifU-like N terminal domain CH63_3413 PF01521 Iron-sulphur cluster biosynthesis CH63_3414 PF00226 DnaJ domain CH63_3414 PF07743 HSCB C-terminal oligomerisation domain CH63_3415 PF00012 Hsp70 protein CH63_3416 PF00111 2Fe-2S iron-sulfur cluster binding domain CH63_3417 PF04384 Iron-sulphur cluster assembly CH63_3418 PF00883 Cytosol aminopeptidase family, catalytic domain CH63_3418 PF12404 Peptidase CH63_3419 PF07179 SseB protein N-terminal domain CH63_3419 PF14581 SseB protein C-terminal domain CH63_342 PF03412 Peptidase C39 family CH63_342 PF00664 ABC transporter transmembrane region CH63_342 PF00005 ABC transporter CH63_3421 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH63_3421 PF03212 Pertactin CH63_3421 PF03797 Autotransporter beta-domain CH63_3422 PF03212 Pertactin CH63_3422 PF03797 Autotransporter beta-domain CH63_3422 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH63_3425 PF00334 Nucleoside diphosphate kinase CH63_3426 PF04055 Radical SAM superfamily CH63_3428 PF13464 Domain of unknown function (DUF4115) CH63_3429 PF04551 GcpE protein CH63_343 PF10754 Protein of unknown function (DUF2569) CH63_3430 PF03129 Anticodon binding domain CH63_3430 PF13393 Histidyl-tRNA synthetase CH63_3431 PF09976 Tetratricopeptide repeat-like domain CH63_3432 PF13360 PQQ-like domain CH63_3433 PF01926 50S ribosome-binding GTPase CH63_3433 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CH63_3435 PF07191 zinc-ribbons CH63_3436 PF02601 Exonuclease VII, large subunit CH63_3436 PF13742 OB-fold nucleic acid binding domain CH63_3437 PF00571 CBS domain CH63_3437 PF00478 IMP dehydrogenase / GMP reductase domain CH63_3438 PF00117 Glutamine amidotransferase class-I CH63_3438 PF02540 NAD synthase CH63_3438 PF00958 GMP synthase C terminal domain CH63_3439 PF01797 Transposase IS200 like CH63_344 PF02508 Rnf-Nqr subunit, membrane protein CH63_3440 PF05638 Type VI secretion system effector, Hcp CH63_3446 PF00872 Transposase, Mutator family CH63_3447 PF00270 DEAD/DEAH box helicase CH63_3447 PF00271 Helicase conserved C-terminal domain CH63_345 PF04060 Putative Fe-S cluster CH63_3450 PF01207 Dihydrouridine synthase (Dus) CH63_3452 PF00768 D-alanyl-D-alanine carboxypeptidase CH63_3453 PF01565 FAD binding domain CH63_3453 PF09330 D-lactate dehydrogenase, membrane binding CH63_3454 PF01928 CYTH domain CH63_3457 PF04226 Transglycosylase associated protein CH63_3458 PF00005 ABC transporter CH63_346 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH63_346 PF13237 4Fe-4S dicluster domain CH63_346 PF10531 SLBB domain CH63_346 PF13375 RnfC Barrel sandwich hybrid domain CH63_3460 PF00528 Binding-protein-dependent transport system inner membrane component CH63_3463 PF07308 Protein of unknown function (DUF1456) CH63_3464 PF02954 Bacterial regulatory protein, Fis family CH63_3464 PF13188 PAS domain CH63_3464 PF00158 Sigma-54 interaction domain CH63_3465 PF02653 Branched-chain amino acid transport system / permease component CH63_3466 PF00005 ABC transporter CH63_3467 PF00005 ABC transporter CH63_347 PF12833 Helix-turn-helix domain CH63_347 PF06445 GyrI-like small molecule binding domain CH63_3470 PF00581 Rhodanese-like domain CH63_3473 PF00528 Binding-protein-dependent transport system inner membrane component CH63_3474 PF00005 ABC transporter CH63_3475 PF00528 Binding-protein-dependent transport system inner membrane component CH63_3476 PF13520 Amino acid permease CH63_3477 PF01276 Orn/Lys/Arg decarboxylase, major domain CH63_3477 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH63_3477 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH63_3479 PF00892 EamA-like transporter family CH63_348 PF03116 NQR2, RnfD, RnfE family CH63_3480 PF00267 Gram-negative porin CH63_3481 PF00270 DEAD/DEAH box helicase CH63_3481 PF06733 DEAD_2 CH63_3481 PF13307 Helicase C-terminal domain CH63_3482 PF00199 Catalase CH63_3482 PF06628 Catalase-related immune-responsive CH63_3483 PF07437 YfaZ precursor CH63_3484 PF03222 Tryptophan/tyrosine permease family CH63_3485 PF00994 Probable molybdopterin binding domain CH63_3486 PF03974 Ecotin CH63_3487 PF00111 2Fe-2S iron-sulfur cluster binding domain CH63_3488 PF00268 Ribonucleotide reductase, small chain CH63_3489 PF00317 Ribonucleotide reductase, all-alpha domain CH63_3489 PF02867 Ribonucleotide reductase, barrel domain CH63_3489 PF03477 ATP cone domain CH63_349 PF04205 FMN-binding domain CH63_3491 PF03989 DNA gyrase C-terminal domain, beta-propeller CH63_3491 PF00521 DNA gyrase/topoisomerase IV, subunit A CH63_3492 PF00072 Response regulator receiver domain CH63_3492 PF09456 RcsC Alpha-Beta-Loop (ABL) CH63_3492 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH63_3492 PF00512 His Kinase A (phospho-acceptor) domain CH63_3493 PF00072 Response regulator receiver domain CH63_3493 PF00196 Bacterial regulatory proteins, luxR family CH63_3494 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH63_3494 PF01627 Hpt domain CH63_3494 PF16359 RcsD-ABL domain CH63_3495 PF01627 Hpt domain CH63_3495 PF16359 RcsD-ABL domain CH63_3495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH63_3496 PF07690 Major Facilitator Superfamily CH63_3498 PF00267 Gram-negative porin CH63_35 PF05772 NinB protein CH63_350 PF02508 Rnf-Nqr subunit, membrane protein CH63_3502 PF00144 Beta-lactamase CH63_3504 PF12706 Beta-lactamase superfamily domain CH63_3505 PF00672 HAMP domain CH63_3505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH63_3505 PF02743 Cache domain CH63_3506 PF01278 Omptin family CH63_3507 PF06183 DinI-like family CH63_3508 PF00717 Peptidase S24-like CH63_3508 PF01381 Helix-turn-helix CH63_3509 PF06530 Phage antitermination protein Q CH63_351 PF00633 Helix-hairpin-helix motif CH63_351 PF10576 Iron-sulfur binding domain of endonuclease III CH63_351 PF00730 HhH-GPD superfamily base excision DNA repair protein CH63_3510 PF17042 Nucleotide-binding C-terminal domain CH63_3510 PF07005 Sugar-binding N-terminal domain CH63_3511 PF00596 Class II Aldolase and Adducin N-terminal domain CH63_3512 PF08220 DeoR-like helix-turn-helix domain CH63_3512 PF00455 DeoR C terminal sensor domain CH63_3513 PF01261 Xylose isomerase-like TIM barrel CH63_3517 PF04984 Phage tail sheath protein subtilisin-like domain CH63_3517 PF17482 Phage tail sheath C-terminal domain CH63_352 PF01370 NAD dependent epimerase/dehydratase family CH63_3526 PF04865 Baseplate J-like protein CH63_3529 PF07484 Phage Tail Collar Domain CH63_353 PF07690 Major Facilitator Superfamily CH63_3530 PF01418 Helix-turn-helix domain, rpiR family CH63_3530 PF01380 SIS domain CH63_3532 PF00232 Glycosyl hydrolase family 1 CH63_3536 PF05638 Type VI secretion system effector, Hcp CH63_3539 PF00884 Sulfatase CH63_3539 PF11893 Domain of unknown function (DUF3413) CH63_354 PF17876 Cold shock domain CH63_354 PF08206 Ribonuclease B OB domain CH63_354 PF00773 RNB domain CH63_354 PF00575 S1 RNA binding domain CH63_3540 PF07208 Protein of unknown function (DUF1414) CH63_3541 PF04245 37-kD nucleoid-associated bacterial protein CH63_3542 PF01797 Transposase IS200 like CH63_3543 PF01386 Ribosomal L25p family CH63_3544 PF04851 Type III restriction enzyme, res subunit CH63_3544 PF00271 Helicase conserved C-terminal domain CH63_3545 PF00849 RNA pseudouridylate synthase CH63_3545 PF01479 S4 domain CH63_3546 PF07690 Major Facilitator Superfamily CH63_3547 PF13989 YejG-like protein CH63_3548 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH63_3548 PF00005 ABC transporter CH63_3549 PF00528 Binding-protein-dependent transport system inner membrane component CH63_3549 PF12911 N-terminal TM domain of oligopeptide transport permease C CH63_355 PF13722 5TM C-terminal transporter carbon starvation CstA CH63_355 PF02554 Carbon starvation protein CstA CH63_3550 PF00528 Binding-protein-dependent transport system inner membrane component CH63_3551 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH63_3552 PF00563 EAL domain CH63_3552 PF12792 CSS motif domain associated with EAL CH63_3554 PF00877 NlpC/P60 family CH63_3555 PF01569 PAP2 superfamily CH63_3556 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH63_3556 PF07683 Cobalamin synthesis protein cobW C-terminal domain CH63_3558 PF00392 Bacterial regulatory proteins, gntR family CH63_3558 PF07729 FCD domain CH63_3559 PF08125 Mannitol dehydrogenase C-terminal domain CH63_3559 PF01232 Mannitol dehydrogenase Rossmann domain CH63_356 PF04328 Selenoprotein, putative CH63_3560 PF03786 D-mannonate dehydratase (UxuA) CH63_3561 PF01132 Elongation factor P (EF-P) OB domain CH63_3561 PF08207 Elongation factor P (EF-P) KOW-like domain CH63_3561 PF09285 Elongation factor P, C-terminal CH63_3562 PF03222 Tryptophan/tyrosine permease family CH63_3563 PF03692 Putative zinc- or iron-chelating domain CH63_3565 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH63_3565 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH63_3565 PF01842 ACT domain CH63_3567 PF00171 Aldehyde dehydrogenase family CH63_3568 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH63_3568 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH63_3569 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH63_357 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH63_3571 PF00005 ABC transporter CH63_3572 PF02653 Branched-chain amino acid transport system / permease component CH63_3573 PF00293 NUDIX domain CH63_3574 PF00381 PTS HPr component phosphorylation site CH63_3574 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH63_3575 PF00294 pfkB family carbohydrate kinase CH63_3578 PF00486 Transcriptional regulatory protein, C terminal CH63_3579 PF17550 Family of unknown function CH63_3581 PF02753 Pili assembly chaperone PapD, C-terminal domain CH63_3581 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH63_3582 PF13954 PapC N-terminal domain CH63_3582 PF13953 PapC C-terminal domain CH63_3582 PF00577 Outer membrane usher protein CH63_3583 PF01261 Xylose isomerase-like TIM barrel CH63_3584 PF03601 Conserved hypothetical protein 698 CH63_3585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_3585 PF03466 LysR substrate binding domain CH63_359 PF00596 Class II Aldolase and Adducin N-terminal domain CH63_3590 PF01032 FecCD transport family CH63_3591 PF00005 ABC transporter CH63_3592 PF07715 TonB-dependent Receptor Plug Domain CH63_3592 PF00593 TonB dependent receptor CH63_3593 PF13417 Glutathione S-transferase, N-terminal domain CH63_3593 PF00043 Glutathione S-transferase, C-terminal domain CH63_3597 PF03180 NLPA lipoprotein CH63_3598 PF09383 NIL domain CH63_3598 PF00005 ABC transporter CH63_3599 PF00528 Binding-protein-dependent transport system inner membrane component CH63_360 PF05433 Glycine zipper 2TM domain CH63_3600 PF07943 Penicillin-binding protein 5, C-terminal domain CH63_3600 PF00768 D-alanyl-D-alanine carboxypeptidase CH63_3603 PF08220 DeoR-like helix-turn-helix domain CH63_3603 PF00455 DeoR C terminal sensor domain CH63_3604 PF01791 DeoC/LacD family aldolase CH63_3605 PF01569 PAP2 superfamily CH63_3607 PF06826 Predicted Permease Membrane Region CH63_3607 PF02080 TrkA-C domain CH63_3608 PF00462 Glutaredoxin CH63_3609 PF07214 Protein of unknown function (DUF1418) CH63_361 PF01253 Translation initiation factor SUI1 CH63_3610 PF10722 Putative bacterial sensory transduction regulator CH63_3611 PF13416 Bacterial extracellular solute-binding protein CH63_3612 PF08402 TOBE domain CH63_3612 PF00005 ABC transporter CH63_3613 PF00528 Binding-protein-dependent transport system inner membrane component CH63_3614 PF00528 Binding-protein-dependent transport system inner membrane component CH63_3615 PF10767 Protein of unknown function (DUF2593) CH63_3616 PF05958 tRNA (Uracil-5-)-methyltransferase CH63_3617 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH63_362 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CH63_3622 PF01032 FecCD transport family CH63_3623 PF00005 ABC transporter CH63_3624 PF03059 Nicotianamine synthase protein CH63_3625 PF10100 Staphylopine dehydrogenase CH63_3626 PF00892 EamA-like transporter family CH63_3627 PF00528 Binding-protein-dependent transport system inner membrane component CH63_3628 PF00528 Binding-protein-dependent transport system inner membrane component CH63_3629 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH63_3630 PF00005 ABC transporter CH63_3631 PF01817 Chorismate mutase type II CH63_3632 PF12883 Protein of unknown function (DUF3828) CH63_3633 PF01370 NAD dependent epimerase/dehydratase family CH63_3634 PF11066 Protein of unknown function (DUF2867) CH63_3634 PF13460 NAD(P)H-binding CH63_3635 PF01212 Beta-eliminating lyase CH63_3636 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH63_3636 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH63_3636 PF00205 Thiamine pyrophosphate enzyme, central domain CH63_3637 PF00970 Oxidoreductase FAD-binding domain CH63_3637 PF00175 Oxidoreductase NAD-binding domain CH63_3637 PF00111 2Fe-2S iron-sulfur cluster binding domain CH63_3638 PF03063 Prismane/CO dehydrogenase family CH63_3639 PF03956 Lysine exporter LysO CH63_364 PF18073 Rubredoxin metal binding domain CH63_3640 PF11398 Protein of unknown function (DUF2813) CH63_3641 PF04393 Protein of unknown function (DUF535) CH63_3642 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH63_3643 PF00005 ABC transporter CH63_3643 PF02687 FtsX-like permease family CH63_3643 PF12704 MacB-like periplasmic core domain CH63_3644 PF00313 'Cold-shock' DNA-binding domain CH63_3645 PF02617 ATP-dependent Clp protease adaptor protein ClpS CH63_3646 PF00004 ATPase family associated with various cellular activities (AAA) CH63_3646 PF10431 C-terminal, D2-small domain, of ClpB protein CH63_3646 PF07724 AAA domain (Cdc48 subfamily) CH63_3646 PF17871 AAA lid domain CH63_3646 PF02861 Clp amino terminal domain, pathogenicity island component CH63_3648 PF01176 Translation initiation factor 1A / IF-1 CH63_365 PF06305 Lipopolysaccharide assembly protein A domain CH63_3651 PF00005 ABC transporter CH63_3651 PF00664 ABC transporter transmembrane region CH63_3652 PF00005 ABC transporter CH63_3652 PF00664 ABC transporter transmembrane region CH63_3653 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH63_3654 PF01037 Lrp/AsnC ligand binding domain CH63_3655 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CH63_3655 PF01580 FtsK/SpoIIIE family CH63_3655 PF09397 Ftsk gamma domain CH63_3655 PF17854 FtsK alpha domain CH63_3656 PF03548 Outer membrane lipoprotein carrier protein LolA CH63_3658 PF16193 AAA C-terminal domain CH63_3658 PF00004 ATPase family associated with various cellular activities (AAA) CH63_3658 PF12002 MgsA AAA+ ATPase C terminal CH63_3659 PF02403 Seryl-tRNA synthetase N-terminal domain CH63_3659 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH63_366 PF01569 PAP2 superfamily CH63_3660 PF07690 Major Facilitator Superfamily CH63_3661 PF01695 IstB-like ATP binding protein CH63_3663 PF00665 Integrase core domain CH63_3663 PF02796 Helix-turn-helix domain of resolvase CH63_3664 PF07690 Major Facilitator Superfamily CH63_3665 PF04055 Radical SAM superfamily CH63_3667 PF02901 Pyruvate formate lyase-like CH63_3667 PF01228 Glycine radical CH63_3668 PF01226 Formate/nitrite transporter CH63_3669 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CH63_3669 PF18381 YcaO cyclodehydratase C-terminal domain CH63_367 PF00925 GTP cyclohydrolase II CH63_3670 PF00710 Asparaginase, N-terminal CH63_3670 PF17763 Glutaminase/Asparaginase C-terminal domain CH63_3671 PF05662 Coiled stalk of trimeric autotransporter adhesin CH63_3671 PF05658 Head domain of trimeric autotransporter adhesin CH63_3671 PF03895 YadA-like membrane anchor domain CH63_3671 PF03895 YadA-like membrane anchor domain CH63_3671 PF13018 Extended Signal Peptide of Type V secretion system CH63_3671 PF05662 Coiled stalk of trimeric autotransporter adhesin CH63_3671 PF05658 Head domain of trimeric autotransporter adhesin CH63_3671 PF13018 Extended Signal Peptide of Type V secretion system CH63_3673 PF00266 Aminotransferase class-V CH63_3674 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH63_3675 PF02224 Cytidylate kinase CH63_3676 PF00575 S1 RNA binding domain CH63_3678 PF00216 Bacterial DNA-binding protein CH63_368 PF00694 Aconitase C-terminal domain CH63_368 PF00330 Aconitase family (aconitate hydratase) CH63_3681 PF00005 ABC transporter CH63_3681 PF00664 ABC transporter transmembrane region CH63_3682 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CH63_3683 PF07063 Domain of unknown function (DUF1338) CH63_3684 PF00313 'Cold-shock' DNA-binding domain CH63_3685 PF03966 Trm112p-like protein CH63_3686 PF02348 Cytidylyltransferase CH63_3687 PF01636 Phosphotransferase enzyme family CH63_3689 PF03882 MukF winged-helix domain CH63_3689 PF17193 MukF C-terminal domain CH63_3689 PF17192 MukF middle domain CH63_3690 PF04288 MukE-like family CH63_3691 PF04310 MukB N-terminal CH63_3691 PF16330 MukB hinge domain CH63_3693 PF01471 Putative peptidoglycan binding domain CH63_3693 PF03734 L,D-transpeptidase catalytic domain CH63_3694 PF05951 Bacterial protein of unknown function (DUF882) CH63_3695 PF00753 Metallo-beta-lactamase superfamily CH63_3696 PF00155 Aminotransferase class I and II CH63_3697 PF00267 Gram-negative porin CH63_3698 PF01336 OB-fold nucleic acid binding domain CH63_3698 PF00152 tRNA synthetases class II (D, K and N) CH63_3699 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CH63_3699 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CH63_37 PF06530 Phage antitermination protein Q CH63_370 PF03466 LysR substrate binding domain CH63_370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_3700 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CH63_3700 PF01433 Peptidase family M1 domain CH63_3700 PF11940 Domain of unknown function (DUF3458) Ig-like fold CH63_3701 PF01180 Dihydroorotate dehydrogenase CH63_3702 PF07126 Cell-division protein ZapC CH63_3703 PF03473 MOSC domain CH63_3703 PF03476 MOSC N-terminal beta barrel domain CH63_3703 PF00111 2Fe-2S iron-sulfur cluster binding domain CH63_3704 PF02926 THUMP domain CH63_3704 PF01170 Putative RNA methylase family UPF0020 CH63_3704 PF10672 S-adenosylmethionine-dependent methyltransferase CH63_3705 PF12848 ABC transporter CH63_3705 PF16326 ABC transporter C-terminal domain CH63_3705 PF00005 ABC transporter CH63_3706 PF04403 Paraquat-inducible protein A CH63_3707 PF02470 MlaD protein CH63_3708 PF03886 ABC-type transport auxiliary lipoprotein component CH63_3709 PF01797 Transposase IS200 like CH63_371 PF01751 Toprim domain CH63_371 PF08272 Topoisomerase I zinc-ribbon-like CH63_371 PF01396 Topoisomerase DNA binding C4 zinc finger CH63_371 PF01131 DNA topoisomerase CH63_3710 PF02801 Beta-ketoacyl synthase, C-terminal domain CH63_3710 PF00109 Beta-ketoacyl synthase, N-terminal domain CH63_3711 PF01695 IstB-like ATP binding protein CH63_3712 PF02796 Helix-turn-helix domain of resolvase CH63_3712 PF00665 Integrase core domain CH63_3713 PF00109 Beta-ketoacyl synthase, N-terminal domain CH63_3713 PF02801 Beta-ketoacyl synthase, C-terminal domain CH63_3715 PF07977 FabA-like domain CH63_3716 PF05362 Lon protease (S16) C-terminal proteolytic domain CH63_3716 PF13654 AAA domain CH63_3717 PF06303 MatP N-terminal domain CH63_3717 PF17414 MatP C-terminal ribbon-helix-helix domain CH63_3718 PF01797 Transposase IS200 like CH63_3719 PF00691 OmpA family CH63_3719 PF01389 OmpA-like transmembrane domain CH63_3720 PF03846 Cell division inhibitor SulA CH63_3721 PF04993 TfoX N-terminal domain CH63_3721 PF04994 TfoX C-terminal domain CH63_3722 PF12805 FUSC-like inner membrane protein yccS CH63_3723 PF03733 Inner membrane component domain CH63_3724 PF12462 DNA helicase IV / RNA helicase N terminal CH63_3724 PF00580 UvrD/REP helicase N-terminal domain CH63_3724 PF13361 UvrD-like helicase C-terminal domain CH63_3725 PF02142 MGS-like domain CH63_3726 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CH63_3727 PF13380 CoA binding domain CH63_3728 PF08755 Hemimethylated DNA-binding protein YccV like CH63_3729 PF17785 PUA-like domain CH63_3729 PF10672 S-adenosylmethionine-dependent methyltransferase CH63_373 PF10692 Protein of unknown function (DUF2498) CH63_3730 PF00708 Acylphosphatase CH63_3731 PF04358 DsrC like protein CH63_3733 PF13610 DDE domain CH63_3737 PF08031 Berberine and berberine like CH63_3737 PF01565 FAD binding domain CH63_374 PF01343 Peptidase family S49 CH63_374 PF08496 Peptidase family S49 N-terminal CH63_3740 PF07977 FabA-like domain CH63_3741 PF00109 Beta-ketoacyl synthase, N-terminal domain CH63_3741 PF02801 Beta-ketoacyl synthase, C-terminal domain CH63_3743 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal CH63_3743 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal CH63_3745 PF00378 Enoyl-CoA hydratase/isomerase CH63_3748 PF00550 Phosphopantetheine attachment site CH63_3749 PF00698 Acyl transferase domain CH63_375 PF00106 short chain dehydrogenase CH63_3755 PF00691 OmpA family CH63_3755 PF05736 OprF membrane domain CH63_3757 PF07724 AAA domain (Cdc48 subfamily) CH63_3757 PF10431 C-terminal, D2-small domain, of ClpB protein CH63_3757 PF17871 AAA lid domain CH63_3757 PF00004 ATPase family associated with various cellular activities (AAA) CH63_376 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CH63_377 PF01479 S4 domain CH63_377 PF00849 RNA pseudouridylate synthase CH63_3776 PF00005 ABC transporter CH63_3776 PF12848 ABC transporter CH63_3778 PF00872 Transposase, Mutator family CH63_3779 PF00899 ThiF family CH63_378 PF01300 Telomere recombination CH63_3780 PF03453 MoeA N-terminal region (domain I and II) CH63_3780 PF00994 Probable molybdopterin binding domain CH63_3780 PF03454 MoeA C-terminal region (domain IV) CH63_3782 PF00005 ABC transporter CH63_3783 PF13533 Biotin-lipoyl like CH63_3786 PF00756 Putative esterase CH63_3787 PF00107 Zinc-binding dehydrogenase CH63_3787 PF08240 Alcohol dehydrogenase GroES-like domain CH63_3788 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_3788 PF03466 LysR substrate binding domain CH63_3789 PF06779 Uncharacterised MFS-type transporter YbfB CH63_379 PF02811 PHP domain CH63_3790 PF01227 GTP cyclohydrolase I CH63_3791 PF04235 Protein of unknown function (DUF418) CH63_3792 PF13407 Periplasmic binding protein domain CH63_3793 PF00005 ABC transporter CH63_3794 PF02653 Branched-chain amino acid transport system / permease component CH63_3795 PF02698 DUF218 domain CH63_3796 PF00390 Malic enzyme, N-terminal domain CH63_3796 PF03949 Malic enzyme, NAD binding domain CH63_3797 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH63_3797 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CH63_3798 PF04172 LrgB-like family CH63_3799 PF03788 LrgA family CH63_380 PF04715 Anthranilate synthase component I, N terminal region CH63_380 PF00425 chorismate binding enzyme CH63_3800 PF07690 Major Facilitator Superfamily CH63_3805 PF01797 Transposase IS200 like CH63_3806 PF09334 tRNA synthetases class I (M) CH63_3806 PF01588 Putative tRNA binding domain CH63_3807 PF10609 NUBPL iron-transfer P-loop NTPase CH63_3808 PF00485 Phosphoribulokinase / Uridine kinase family CH63_3809 PF00692 dUTPase CH63_381 PF00117 Glutamine amidotransferase class-I CH63_3810 PF05170 AsmA family CH63_3811 PF03471 Transporter associated domain CH63_3811 PF03741 Integral membrane protein TerC family CH63_3811 PF00571 CBS domain CH63_3812 PF11575 FhuF 2Fe-2S C-terminal domain CH63_3812 PF06276 Ferric iron reductase FhuF-like transporter CH63_3813 PF00282 Pyridoxal-dependent decarboxylase conserved domain CH63_3814 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CH63_3816 PF04183 IucA / IucC family CH63_3816 PF06276 Ferric iron reductase FhuF-like transporter CH63_3817 PF00005 ABC transporter CH63_3818 PF01032 FecCD transport family CH63_3819 PF01032 FecCD transport family CH63_382 PF00591 Glycosyl transferase family, a/b domain CH63_382 PF02885 Glycosyl transferase family, helical bundle domain CH63_3820 PF01497 Periplasmic binding protein CH63_3821 PF07660 Secretin and TonB N terminus short domain CH63_3821 PF00593 TonB dependent receptor CH63_3821 PF07715 TonB-dependent Receptor Plug Domain CH63_3822 PF06276 Ferric iron reductase FhuF-like transporter CH63_3822 PF04183 IucA / IucC family CH63_3823 PF00483 Nucleotidyl transferase CH63_3824 PF00483 Nucleotidyl transferase CH63_3825 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CH63_3825 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH63_3826 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CH63_3826 PF01502 Phosphoribosyl-AMP cyclohydrolase CH63_3827 PF00977 Histidine biosynthesis protein CH63_3828 PF00977 Histidine biosynthesis protein CH63_3829 PF00117 Glutamine amidotransferase class-I CH63_383 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CH63_383 PF00218 Indole-3-glycerol phosphate synthase CH63_3830 PF00475 Imidazoleglycerol-phosphate dehydratase CH63_3831 PF00155 Aminotransferase class I and II CH63_3832 PF00815 Histidinol dehydrogenase CH63_3833 PF08029 HisG, C-terminal domain CH63_3833 PF01634 ATP phosphoribosyltransferase CH63_3834 PF01370 NAD dependent epimerase/dehydratase family CH63_3836 PF02653 Branched-chain amino acid transport system / permease component CH63_3837 PF00005 ABC transporter CH63_3838 PF00005 ABC transporter CH63_3839 PF00465 Iron-containing alcohol dehydrogenase CH63_384 PF00291 Pyridoxal-phosphate dependent enzyme CH63_3841 PF13520 Amino acid permease CH63_3842 PF00929 Exonuclease CH63_3842 PF08411 Exonuclease C-terminal CH63_3844 PF04363 Protein of unknown function (DUF496) CH63_3845 PF09134 Invasin, domain 3 CH63_3845 PF11924 Inverse autotransporter, beta-domain CH63_3845 PF02369 Bacterial Ig-like domain (group 1) CH63_3846 PF00872 Transposase, Mutator family CH63_3847 PF07690 Major Facilitator Superfamily CH63_3848 PF04134 Protein of unknown function, DUF393 CH63_385 PF00290 Tryptophan synthase alpha chain CH63_3850 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH63_3851 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH63_3851 PF13378 Enolase C-terminal domain-like CH63_3853 PF01070 FMN-dependent dehydrogenase CH63_3854 PF00764 Arginosuccinate synthase CH63_3855 PF01554 MatE CH63_3857 PF01522 Polysaccharide deacetylase CH63_3859 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CH63_3861 PF00072 Response regulator receiver domain CH63_3861 PF00196 Bacterial regulatory proteins, luxR family CH63_3862 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH63_3864 PF03480 Bacterial extracellular solute-binding protein, family 7 CH63_3865 PF01648 4'-phosphopantetheinyl transferase superfamily CH63_3865 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CH63_3868 PF16875 Glycosyl hydrolase family 36 N-terminal domain CH63_3868 PF16874 Glycosyl hydrolase family 36 C-terminal domain CH63_3869 PF01306 LacY proton/sugar symporter CH63_387 PF03922 OmpW family CH63_3870 PF00872 Transposase, Mutator family CH63_3871 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH63_3871 PF00356 Bacterial regulatory proteins, lacI family CH63_3872 PF02796 Helix-turn-helix domain of resolvase CH63_3872 PF00665 Integrase core domain CH63_3875 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH63_3875 PF00356 Bacterial regulatory proteins, lacI family CH63_3877 PF06167 Glucose-regulated metallo-peptidase M90 CH63_3880 PF00005 ABC transporter CH63_3880 PF00664 ABC transporter transmembrane region CH63_3882 PF12833 Helix-turn-helix domain CH63_3884 PF10964 Protein of unknown function (DUF2766) CH63_3885 PF13996 YobH-like protein CH63_3886 PF13974 YebO-like protein CH63_3889 PF00324 Amino acid permease CH63_3890 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP CH63_3892 PF00313 'Cold-shock' DNA-binding domain CH63_3894 PF13847 Methyltransferase domain CH63_3896 PF13426 PAS domain CH63_3896 PF08448 PAS fold CH63_3896 PF08447 PAS fold CH63_3896 PF05231 MASE1 CH63_3896 PF00990 Diguanylate cyclase, GGDEF domain CH63_3896 PF00563 EAL domain CH63_3898 PF00593 TonB dependent receptor CH63_3898 PF07715 TonB-dependent Receptor Plug Domain CH63_3899 PF02659 Putative manganese efflux pump CH63_3900 PF06173 Protein of unknown function (DUF986) CH63_3901 PF03613 PTS system mannose/fructose/sorbose family IID component CH63_3902 PF03609 PTS system sorbose-specific iic component CH63_3903 PF03830 PTS system sorbose subfamily IIB component CH63_3903 PF03610 PTS system fructose IIA component CH63_3904 PF03741 Integral membrane protein TerC family CH63_3904 PF03471 Transporter associated domain CH63_3905 PF01047 MarR family CH63_3906 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH63_3907 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH63_3908 PF00171 Aldehyde dehydrogenase family CH63_3909 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH63_391 PF04279 Intracellular septation protein A CH63_3910 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase CH63_3911 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH63_3912 PF03328 HpcH/HpaI aldolase/citrate lyase family CH63_3915 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal CH63_3915 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal CH63_3916 PF01613 Flavin reductase like domain CH63_3917 PF03315 Serine dehydratase beta chain CH63_3917 PF03313 Serine dehydratase alpha chain CH63_3918 PF00293 NUDIX domain CH63_3919 PF04715 Anthranilate synthase component I, N terminal region CH63_3919 PF00425 chorismate binding enzyme CH63_392 PF03061 Thioesterase superfamily CH63_3920 PF03701 Uncharacterised protein family (UPF0181) CH63_3921 PF02222 ATP-grasp domain CH63_3922 PF00270 DEAD/DEAH box helicase CH63_3922 PF03880 DbpA RNA binding domain CH63_3922 PF00271 Helicase conserved C-terminal domain CH63_3923 PF07130 YebG protein CH63_3925 PF13995 YebF-like protein CH63_3926 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CH63_3926 PF00326 Prolyl oligopeptidase family CH63_3927 PF00561 alpha/beta hydrolase fold CH63_3928 PF00561 alpha/beta hydrolase fold CH63_3929 PF06440 DNA polymerase III, theta subunit CH63_393 PF00872 Transposase, Mutator family CH63_3930 PF00210 Ferritin-like domain CH63_3931 PF04234 CopC domain CH63_3933 PF10709 Protein of unknown function (DUF2511) CH63_3936 PF01312 FlhB HrpN YscU SpaS Family CH63_3937 PF00771 FHIPEP family CH63_3938 PF06366 Flagellar protein FlhE CH63_3939 PF07979 Intimin C-type lectin domain CH63_3939 PF09134 Invasin, domain 3 CH63_3939 PF02369 Bacterial Ig-like domain (group 1) CH63_3939 PF11924 Inverse autotransporter, beta-domain CH63_394 PF00872 Transposase, Mutator family CH63_3941 PF02369 Bacterial Ig-like domain (group 1) CH63_3941 PF07979 Intimin C-type lectin domain CH63_3941 PF09134 Invasin, domain 3 CH63_3941 PF11924 Inverse autotransporter, beta-domain CH63_3942 PF05130 FlgN protein CH63_3943 PF04316 Anti-sigma-28 factor, FlgM CH63_3944 PF13144 Chaperone for flagella basal body P-ring formation CH63_3944 PF17656 FlgA N-terminal domain CH63_3945 PF00460 Flagella basal body rod protein CH63_3946 PF00460 Flagella basal body rod protein CH63_3946 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH63_3947 PF13861 FlgD Tudor-like domain CH63_3947 PF03963 Flagellar hook capping protein - N-terminal region CH63_3947 PF13860 FlgD Ig-like domain CH63_3948 PF00460 Flagella basal body rod protein CH63_3948 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH63_3948 PF07559 Flagellar basal body protein FlaE CH63_3949 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH63_3949 PF00460 Flagella basal body rod protein CH63_395 PF03544 Gram-negative bacterial TonB protein C-terminal CH63_3950 PF00460 Flagella basal body rod protein CH63_3950 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH63_3951 PF02107 Flagellar L-ring protein CH63_3952 PF02119 Flagellar P-ring protein CH63_3953 PF10135 Rod binding protein CH63_3953 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CH63_3954 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH63_3954 PF00460 Flagella basal body rod protein CH63_3955 PF00669 Bacterial flagellin N-terminal helical region CH63_3956 PF04198 Putative sugar-binding domain CH63_3957 PF00596 Class II Aldolase and Adducin N-terminal domain CH63_3959 PF02653 Branched-chain amino acid transport system / permease component CH63_3960 PF13407 Periplasmic binding protein domain CH63_3961 PF00005 ABC transporter CH63_3962 PF02653 Branched-chain amino acid transport system / permease component CH63_3963 PF02653 Branched-chain amino acid transport system / permease component CH63_3964 PF00294 pfkB family carbohydrate kinase CH63_3967 PF01311 Bacterial export proteins, family 1 CH63_3968 PF01313 Bacterial export proteins, family 3 CH63_3969 PF00813 FliP family CH63_397 PF03795 YCII-related domain CH63_3970 PF04347 Flagellar biosynthesis protein, FliO CH63_3971 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH63_3971 PF16973 Flagellar motor switch protein FliN N-terminal CH63_3972 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH63_3972 PF02154 Flagellar motor switch protein FliM CH63_3973 PF03748 Flagellar basal body-associated protein FliL CH63_3974 PF02120 Flagellar hook-length control protein FliK CH63_3975 PF02050 Flagellar FliJ protein CH63_3976 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH63_3976 PF18269 T3SS EscN ATPase C-terminal domain CH63_3977 PF02108 Flagellar assembly protein FliH CH63_3978 PF01706 FliG C-terminal domain CH63_3978 PF14841 FliG middle domain CH63_3978 PF14842 FliG N-terminal domain CH63_3979 PF01514 Secretory protein of YscJ/FliF family CH63_3979 PF08345 Flagellar M-ring protein C-terminal CH63_3980 PF02049 Flagellar hook-basal body complex protein FliE CH63_3983 PF00730 HhH-GPD superfamily base excision DNA repair protein CH63_3984 PF01966 HD domain CH63_3986 PF02743 Cache domain CH63_3986 PF00211 Adenylate and Guanylate cyclase catalytic domain CH63_3986 PF00672 HAMP domain CH63_3987 PF12833 Helix-turn-helix domain CH63_3988 PF05400 Flagellar protein FliT CH63_3989 PF02561 Flagellar protein FliS CH63_3990 PF02465 Flagellar hook-associated protein 2 N-terminus CH63_3990 PF07196 Flagellin hook IN motif CH63_3990 PF07195 Flagellar hook-associated protein 2 C-terminus CH63_3991 PF00700 Bacterial flagellin C-terminal helical region CH63_3991 PF00669 Bacterial flagellin N-terminal helical region CH63_3991 PF08884 Flagellin D3 domain CH63_3992 PF04542 Sigma-70 region 2 CH63_3992 PF04539 Sigma-70 region 3 CH63_3992 PF04545 Sigma-70, region 4 CH63_3993 PF02899 Phage integrase, N-terminal SAM-like domain CH63_3994 PF00291 Pyridoxal-phosphate dependent enzyme CH63_4 PF00950 ABC 3 transport family CH63_400 PF13505 Outer membrane protein beta-barrel domain CH63_4000 PF01619 Proline dehydrogenase CH63_4000 PF14850 DNA-binding domain of Proline dehydrogenase CH63_4000 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CH63_4000 PF00171 Aldehyde dehydrogenase family CH63_4002 PF00474 Sodium:solute symporter family CH63_4003 PF03239 Iron permease FTR1 family CH63_4004 PF09375 Imelysin CH63_4004 PF13473 Cupredoxin-like domain CH63_4005 PF04261 Dyp-type peroxidase family CH63_4006 PF03358 NADPH-dependent FMN reductase CH63_4007 PF01344 Kelch motif CH63_4008 PF00324 Amino acid permease CH63_401 PF13091 PLD-like domain CH63_401 PF13396 Phospholipase_D-nuclease N-terminal CH63_4010 PF13505 Outer membrane protein beta-barrel domain CH63_4012 PF06942 GlpM protein CH63_4013 PF10769 Protein of unknown function (DUF2594) CH63_4014 PF00196 Bacterial regulatory proteins, luxR family CH63_4014 PF00072 Response regulator receiver domain CH63_4015 PF08459 UvrC Helix-hairpin-helix N-terminal CH63_4015 PF02151 UvrB/uvrC motif CH63_4015 PF01541 GIY-YIG catalytic domain CH63_4016 PF01066 CDP-alcohol phosphatidyltransferase CH63_402 PF04269 Protein of unknown function, DUF440 CH63_4026 PF05638 Type VI secretion system effector, Hcp CH63_4038 PF00872 Transposase, Mutator family CH63_4039 PF00872 Transposase, Mutator family CH63_404 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH63_404 PF00005 ABC transporter CH63_4046 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH63_4046 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH63_4048 PF00528 Binding-protein-dependent transport system inner membrane component CH63_4049 PF00528 Binding-protein-dependent transport system inner membrane component CH63_405 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH63_405 PF00005 ABC transporter CH63_4050 PF00005 ABC transporter CH63_4050 PF08402 TOBE domain CH63_4053 PF02796 Helix-turn-helix domain of resolvase CH63_4053 PF00665 Integrase core domain CH63_4054 PF01695 IstB-like ATP binding protein CH63_4057 PF01979 Amidohydrolase family CH63_4058 PF00392 Bacterial regulatory proteins, gntR family CH63_4058 PF07702 UTRA domain CH63_4059 PF01979 Amidohydrolase family CH63_406 PF00528 Binding-protein-dependent transport system inner membrane component CH63_406 PF12911 N-terminal TM domain of oligopeptide transport permease C CH63_4060 PF05962 HutD CH63_4062 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH63_4062 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH63_4063 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH63_4063 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH63_4064 PF01370 NAD dependent epimerase/dehydratase family CH63_407 PF00528 Binding-protein-dependent transport system inner membrane component CH63_4073 PF00872 Transposase, Mutator family CH63_4078 PF08242 Methyltransferase domain CH63_408 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH63_4087 PF00672 HAMP domain CH63_4087 PF00512 His Kinase A (phospho-acceptor) domain CH63_4087 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH63_4088 PF00486 Transcriptional regulatory protein, C terminal CH63_4088 PF00072 Response regulator receiver domain CH63_4089 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CH63_409 PF01914 MarC family integral membrane protein CH63_4098 PF01926 50S ribosome-binding GTPase CH63_4098 PF06071 Protein of unknown function (DUF933) CH63_4099 PF01195 Peptidyl-tRNA hydrolase CH63_410 PF00465 Iron-containing alcohol dehydrogenase CH63_410 PF00171 Aldehyde dehydrogenase family CH63_4100 PF10762 Protein of unknown function (DUF2583) CH63_4101 PF14572 Phosphoribosyl synthetase-associated domain CH63_4101 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CH63_4102 PF08544 GHMP kinases C terminal CH63_4102 PF00288 GHMP kinases N terminal domain CH63_4103 PF03550 Outer membrane lipoprotein LolB CH63_4104 PF01488 Shikimate / quinate 5-dehydrogenase CH63_4104 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CH63_4104 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CH63_4105 PF03462 PCRF domain CH63_4105 PF00472 RF-1 domain CH63_4106 PF17827 PrmC N-terminal domain CH63_4106 PF13847 Methyltransferase domain CH63_4107 PF04247 Invasion gene expression up-regulator, SirB CH63_4108 PF13369 Transglutaminase-like superfamily CH63_4109 PF00793 DAHP synthetase I family CH63_411 PF02796 Helix-turn-helix domain of resolvase CH63_411 PF00665 Integrase core domain CH63_4110 PF00916 Sulfate permease family CH63_4110 PF01740 STAS domain CH63_4113 PF03009 Glycerophosphoryl diester phosphodiesterase family CH63_4115 PF00528 Binding-protein-dependent transport system inner membrane component CH63_4116 PF00528 Binding-protein-dependent transport system inner membrane component CH63_4117 PF08402 TOBE domain CH63_4117 PF00005 ABC transporter CH63_4118 PF03009 Glycerophosphoryl diester phosphodiesterase family CH63_4119 PF01325 Iron dependent repressor, N-terminal DNA binding domain CH63_4119 PF00480 ROK family CH63_412 PF02796 Helix-turn-helix domain of resolvase CH63_412 PF00665 Integrase core domain CH63_4121 PF02811 PHP domain CH63_4122 PF02613 Nitrate reductase delta subunit CH63_4123 PF07273 Protein of unknown function (DUF1439) CH63_4124 PF07690 Major Facilitator Superfamily CH63_4125 PF13302 Acetyltransferase (GNAT) domain CH63_4128 PF03023 Lipid II flippase MurJ CH63_4129 PF17287 POTRA domain CH63_4129 PF08479 POTRA domain, ShlB-type CH63_4129 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH63_4130 PF13332 Hemagglutinin repeat CH63_4130 PF05860 haemagglutination activity domain CH63_4131 PF03485 Arginyl tRNA synthetase N terminal domain CH63_4131 PF00750 tRNA synthetases class I (R) CH63_4131 PF05746 DALR anticodon binding domain CH63_4132 PF06185 YecM protein CH63_4133 PF03932 CutC family CH63_4134 PF08003 Protein of unknown function (DUF1698) CH63_4135 PF13649 Methyltransferase domain CH63_4136 PF01124 MAPEG family CH63_4137 PF01904 Protein of unknown function DUF72 CH63_4138 PF02938 GAD domain CH63_4138 PF00152 tRNA synthetases class II (D, K and N) CH63_4138 PF01336 OB-fold nucleic acid binding domain CH63_4139 PF00293 NUDIX domain CH63_414 PF01695 IstB-like ATP binding protein CH63_4140 PF01709 Transcriptional regulator CH63_4141 PF18607 ParA helix turn helix domain CH63_4141 PF13614 AAA domain CH63_4144 PF02796 Helix-turn-helix domain of resolvase CH63_4144 PF00239 Resolvase, N terminal domain CH63_4145 PF04754 Putative transposase, YhgA-like CH63_4147 PF13091 PLD-like domain CH63_4149 PF01548 Transposase CH63_4149 PF02371 Transposase IS116/IS110/IS902 family CH63_4150 PF00872 Transposase, Mutator family CH63_4155 PF00665 Integrase core domain CH63_4155 PF02796 Helix-turn-helix domain of resolvase CH63_4156 PF01695 IstB-like ATP binding protein CH63_4157 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CH63_4159 PF03335 Phage tail fibre repeat CH63_4159 PF07484 Phage Tail Collar Domain CH63_4159 PF08400 Prophage tail fibre N-terminal CH63_4159 PF03335 Phage tail fibre repeat CH63_4159 PF07484 Phage Tail Collar Domain CH63_4159 PF08400 Prophage tail fibre N-terminal CH63_4185 PF00664 ABC transporter transmembrane region CH63_4185 PF03412 Peptidase C39 family CH63_4185 PF00005 ABC transporter CH63_4186 PF17762 HTH domain found in ParB protein CH63_4186 PF02195 ParB-like nuclease domain CH63_4187 PF17762 HTH domain found in ParB protein CH63_4187 PF02195 ParB-like nuclease domain CH63_4188 PF17191 RecG wedge domain CH63_4188 PF00271 Helicase conserved C-terminal domain CH63_4188 PF00270 DEAD/DEAH box helicase CH63_420 PF01168 Alanine racemase, N-terminal domain CH63_420 PF00842 Alanine racemase, C-terminal domain CH63_4202 PF01051 Initiator Replication protein CH63_4210 PF00154 recA bacterial DNA recombination protein CH63_4212 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH63_4212 PF01367 5'-3' exonuclease, C-terminal SAM fold CH63_4218 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH63_4218 PF14579 Helix-hairpin-helix motif CH63_4218 PF02811 PHP domain CH63_4218 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH63_4220 PF06213 Cobalamin biosynthesis protein CobT CH63_4220 PF11775 Cobalamin biosynthesis protein CobT VWA domain CH63_4224 PF09255 Caf1 Capsule antigen CH63_4225 PF00577 Outer membrane usher protein CH63_4225 PF13954 PapC N-terminal domain CH63_4225 PF13953 PapC C-terminal domain CH63_4226 PF02753 Pili assembly chaperone PapD, C-terminal domain CH63_4226 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH63_4227 PF06445 GyrI-like small molecule binding domain CH63_4227 PF12833 Helix-turn-helix domain CH63_423 PF05658 Head domain of trimeric autotransporter adhesin CH63_423 PF05662 Coiled stalk of trimeric autotransporter adhesin CH63_423 PF13018 Extended Signal Peptide of Type V secretion system CH63_423 PF03895 YadA-like membrane anchor domain CH63_4233 PF01695 IstB-like ATP binding protein CH63_4234 PF02796 Helix-turn-helix domain of resolvase CH63_4234 PF00665 Integrase core domain CH63_4235 PF02195 ParB-like nuclease domain CH63_4236 PF06006 Bacterial protein of unknown function (DUF905) CH63_4239 PF07128 Protein of unknown function (DUF1380) CH63_424 PF05662 Coiled stalk of trimeric autotransporter adhesin CH63_424 PF05658 Head domain of trimeric autotransporter adhesin CH63_424 PF03895 YadA-like membrane anchor domain CH63_424 PF13018 Extended Signal Peptide of Type V secretion system CH63_4241 PF01555 DNA methylase CH63_4246 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH CH63_4248 PF18090 Centromere-binding protein HTH domain CH63_4248 PF02195 ParB-like nuclease domain CH63_4249 PF13614 AAA domain CH63_425 PF01510 N-acetylmuramoyl-L-alanine amidase CH63_4252 PF13333 Integrase core domain CH63_4252 PF00665 Integrase core domain CH63_4252 PF13276 HTH-like domain CH63_4254 PF05818 Enterobacterial TraT complement resistance protein CH63_4256 PF03543 Yersinia/Haemophilus virulence surface antigen CH63_4257 PF05932 Tir chaperone protein (CesT) family CH63_426 PF04344 Chemotaxis phosphatase, CheZ CH63_4261 PF12468 Type III secretion system leucine rich repeat protein CH63_4263 PF05844 YopD protein CH63_4264 PF04888 Secretion system effector C (SseC) like family CH63_4265 PF07720 Tetratricopeptide repeat CH63_4266 PF04792 V antigen (LcrV) protein CH63_4267 PF07216 LcrG protein CH63_4268 PF09621 Type III secretion system regulator (LcrR) CH63_4269 PF00771 FHIPEP family CH63_427 PF00072 Response regulator receiver domain CH63_4271 PF09474 Type III secretion system YscX (type_III_YscX) CH63_4273 PF09059 TyeA CH63_4274 PF07201 HrpJ-like domain CH63_4275 PF18269 T3SS EscN ATPase C-terminal domain CH63_4275 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH63_4275 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH63_4276 PF07321 Type III secretion protein YscO CH63_4277 PF02120 Flagellar hook-length control protein FliK CH63_4278 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH63_4279 PF00813 FliP family CH63_428 PF01339 CheB methylesterase CH63_428 PF00072 Response regulator receiver domain CH63_4280 PF01313 Bacterial export proteins, family 3 CH63_4281 PF01311 Bacterial export proteins, family 1 CH63_4282 PF01312 FlhB HrpN YscU SpaS Family CH63_4284 PF02311 AraC-like ligand binding domain CH63_4284 PF12833 Helix-turn-helix domain CH63_4285 PF05932 Tir chaperone protein (CesT) family CH63_4288 PF16693 Inner membrane component of T3SS, periplasmic domain CH63_4288 PF16697 Inner membrane component of T3SS, cytoplasmic domain CH63_4289 PF08988 Type III secretion system, cytoplasmic E component of needle CH63_429 PF01739 CheR methyltransferase, SAM binding domain CH63_429 PF03705 CheR methyltransferase, all-alpha domain CH63_4290 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF CH63_4291 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) CH63_4292 PF09025 YopR, type III needle-polymerisation regulator CH63_4293 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI CH63_4294 PF01514 Secretory protein of YscJ/FliF family CH63_4295 PF06578 YOP proteins translocation protein K (YscK) CH63_4296 PF02108 Flagellar assembly protein FliH CH63_4297 PF09013 YopH, N-terminal CH63_4298 PF01527 Transposase CH63_430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH63_430 PF02203 Tar ligand binding domain homologue CH63_430 PF00672 HAMP domain CH63_4300 PF13683 Integrase core domain CH63_4300 PF13276 HTH-like domain CH63_4302 PF09013 YopH, N-terminal CH63_4302 PF00102 Protein-tyrosine phosphatase CH63_4303 PF13683 Integrase core domain CH63_4303 PF13276 HTH-like domain CH63_4305 PF09632 Rac1-binding domain CH63_4305 PF00069 Protein kinase domain CH63_4306 PF09632 Rac1-binding domain CH63_4306 PF00069 Protein kinase domain CH63_431 PF02203 Tar ligand binding domain homologue CH63_431 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH63_431 PF00672 HAMP domain CH63_4311 PF02387 IncFII RepA protein family CH63_4313 PF10723 Replication regulatory protein RepB CH63_4319 PF03895 YadA-like membrane anchor domain CH63_4319 PF05658 Head domain of trimeric autotransporter adhesin CH63_4319 PF05662 Coiled stalk of trimeric autotransporter adhesin CH63_4321 PF03895 YadA-like membrane anchor domain CH63_4321 PF05662 Coiled stalk of trimeric autotransporter adhesin CH63_4321 PF05658 Head domain of trimeric autotransporter adhesin CH63_4322 PF01526 Tn3 transposase DDE domain CH63_4322 PF13700 Domain of unknown function (DUF4158) CH63_4324 PF02796 Helix-turn-helix domain of resolvase CH63_4324 PF00239 Resolvase, N terminal domain CH63_4327 PF01527 Transposase CH63_4328 PF13683 Integrase core domain CH63_4328 PF13276 HTH-like domain CH63_4330 PF01695 IstB-like ATP binding protein CH63_4331 PF00665 Integrase core domain CH63_4333 PF13683 Integrase core domain CH63_4333 PF13276 HTH-like domain CH63_4334 PF05932 Tir chaperone protein (CesT) family CH63_4338 PF01815 Rop protein CH63_4339 PF01695 IstB-like ATP binding protein CH63_434 PF12951 Passenger-associated-transport-repeat CH63_4340 PF02796 Helix-turn-helix domain of resolvase CH63_4340 PF00665 Integrase core domain CH63_4341 PF05973 Phage derived protein Gp49-like (DUF891) CH63_4343 PF01278 Omptin family CH63_435 PF13309 HTH domain CH63_435 PF08348 YheO-like PAS domain CH63_437 PF01042 Endoribonuclease L-PSP CH63_438 PF07690 Major Facilitator Superfamily CH63_439 PF01584 CheW-like domain CH63_440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH63_440 PF01584 CheW-like domain CH63_440 PF01627 Hpt domain CH63_440 PF09078 CheY binding CH63_440 PF02895 Signal transducing histidine kinase, homodimeric domain CH63_441 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH63_441 PF00691 OmpA family CH63_442 PF01618 MotA/TolQ/ExbB proton channel family CH63_443 PF05280 Flagellar transcriptional activator (FlhC) CH63_444 PF05247 Flagellar transcriptional activator (FlhD) CH63_445 PF00690 Cation transporter/ATPase, N-terminus CH63_445 PF00689 Cation transporting ATPase, C-terminus CH63_446 PF00690 Cation transporter/ATPase, N-terminus CH63_446 PF00689 Cation transporting ATPase, C-terminus CH63_447 PF02308 MgtC family CH63_448 PF00672 HAMP domain CH63_448 PF02203 Tar ligand binding domain homologue CH63_448 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH63_449 PF00672 HAMP domain CH63_449 PF02203 Tar ligand binding domain homologue CH63_449 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH63_450 PF10781 Dextransucrase DSRB CH63_451 PF00313 'Cold-shock' DNA-binding domain CH63_452 PF00703 Glycosyl hydrolases family 2 CH63_452 PF02929 Beta galactosidase small chain CH63_452 PF02837 Glycosyl hydrolases family 2, sugar binding domain CH63_452 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CH63_452 PF16353 Domain of unknown function(DUF4981) CH63_453 PF00698 Acyl transferase domain CH63_453 PF08240 Alcohol dehydrogenase GroES-like domain CH63_453 PF00550 Phosphopantetheine attachment site CH63_453 PF00107 Zinc-binding dehydrogenase CH63_453 PF14765 Polyketide synthase dehydratase CH63_453 PF16197 Ketoacyl-synthetase C-terminal extension CH63_453 PF00109 Beta-ketoacyl synthase, N-terminal domain CH63_453 PF02801 Beta-ketoacyl synthase, C-terminal domain CH63_453 PF08659 KR domain CH63_454 PF10777 Inner membrane protein YlaC CH63_455 PF13404 AsnC-type helix-turn-helix domain CH63_455 PF01037 Lrp/AsnC ligand binding domain CH63_457 PF14001 YdfZ protein CH63_458 PF00328 Histidine phosphatase superfamily (branch 2) CH63_459 PF00328 Histidine phosphatase superfamily (branch 2) CH63_461 PF01638 HxlR-like helix-turn-helix CH63_462 PF05368 NmrA-like family CH63_463 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH63_463 PF08447 PAS fold CH63_465 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH63_465 PF00356 Bacterial regulatory proteins, lacI family CH63_466 PF00180 Isocitrate/isopropylmalate dehydrogenase CH63_467 PF00849 RNA pseudouridylate synthase CH63_468 PF00293 NUDIX domain CH63_470 PF04356 Protein of unknown function (DUF489) CH63_471 PF00206 Lyase CH63_471 PF08328 Adenylosuccinate lyase C-terminal CH63_473 PF00072 Response regulator receiver domain CH63_473 PF00486 Transcriptional regulatory protein, C terminal CH63_474 PF08918 PhoQ Sensor CH63_474 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH63_475 PF08007 Cupin superfamily protein CH63_476 PF07687 Peptidase dimerisation domain CH63_476 PF01546 Peptidase family M20/M25/M40 CH63_477 PF02146 Sir2 family CH63_478 PF00480 ROK family CH63_479 PF02687 FtsX-like permease family CH63_479 PF12704 MacB-like periplasmic core domain CH63_480 PF00005 ABC transporter CH63_481 PF02687 FtsX-like permease family CH63_481 PF12704 MacB-like periplasmic core domain CH63_482 PF02559 CarD-like/TRCF domain CH63_482 PF17757 UvrB interaction domain CH63_482 PF00270 DEAD/DEAH box helicase CH63_482 PF00271 Helicase conserved C-terminal domain CH63_482 PF03461 TRCF domain CH63_483 PF05433 Glycine zipper 2TM domain CH63_484 PF00872 Transposase, Mutator family CH63_487 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH63_49 PF00872 Transposase, Mutator family CH63_490 PF00933 Glycosyl hydrolase family 3 N terminal domain CH63_491 PF01636 Phosphotransferase enzyme family CH63_492 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH63_492 PF13036 Peptidoglycan-synthase activator LpoB CH63_493 PF07233 Protein of unknown function (DUF1425) CH63_494 PF01230 HIT domain CH63_495 PF08501 Shikimate dehydrogenase substrate binding domain CH63_497 PF00367 phosphotransferase system, EIIB CH63_497 PF02378 Phosphotransferase system, EIIC CH63_498 PF01026 TatD related DNase CH63_499 PF09115 DNA polymerase III, delta subunit, C terminal CH63_5 PF00005 ABC transporter CH63_500 PF02223 Thymidylate kinase CH63_501 PF02618 YceG-like family CH63_502 PF01063 Amino-transferase class IV CH63_503 PF01797 Transposase IS200 like CH63_504 PF00109 Beta-ketoacyl synthase, N-terminal domain CH63_504 PF02801 Beta-ketoacyl synthase, C-terminal domain CH63_505 PF00550 Phosphopantetheine attachment site CH63_507 PF00698 Acyl transferase domain CH63_508 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH63_508 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH63_509 PF02504 Fatty acid synthesis protein CH63_510 PF01783 Ribosomal L32p protein family CH63_511 PF02620 Large ribosomal RNA subunit accumulation protein YceD CH63_512 PF02545 Maf-like protein CH63_513 PF00849 RNA pseudouridylate synthase CH63_513 PF01479 S4 domain CH63_514 PF12111 Polyribonucleotide phosphorylase C terminal CH63_514 PF10150 Ribonuclease E/G family CH63_514 PF00575 S1 RNA binding domain CH63_515 PF00872 Transposase, Mutator family CH63_516 PF03992 Antibiotic biosynthesis monooxygenase CH63_517 PF01979 Amidohydrolase family CH63_518 PF06183 DinI-like family CH63_519 PF00872 Transposase, Mutator family CH63_520 PF13991 BssS protein family CH63_521 PF01266 FAD dependent oxidoreductase CH63_522 PF00196 Bacterial regulatory proteins, luxR family CH63_523 PF01594 AI-2E family transporter CH63_527 PF03472 Autoinducer binding domain CH63_527 PF00196 Bacterial regulatory proteins, luxR family CH63_528 PF00765 Autoinducer synthase CH63_529 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_529 PF03466 LysR substrate binding domain CH63_531 PF00083 Sugar (and other) transporter CH63_534 PF00248 Aldo/keto reductase family CH63_535 PF09618 CRISPR-associated protein (Cas_Csy4) CH63_536 PF09615 CRISPR-associated protein (Cas_Csy3) CH63_537 PF09614 CRISPR-associated protein (Cas_Csy2) CH63_538 PF09611 CRISPR-associated protein (Cas_Csy1) CH63_540 PF01867 CRISPR associated protein Cas1 CH63_541 PF00924 Mechanosensitive ion channel CH63_545 PF04041 beta-1,4-mannooligosaccharide phosphorylase CH63_546 PF00528 Binding-protein-dependent transport system inner membrane component CH63_547 PF00528 Binding-protein-dependent transport system inner membrane component CH63_549 PF00356 Bacterial regulatory proteins, lacI family CH63_550 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH63_550 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH63_550 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH63_550 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH63_551 PF17912 MalK OB fold domain CH63_551 PF00005 ABC transporter CH63_553 PF04829 Pre-toxin domain with VENN motif CH63_553 PF15526 Novel toxin 21 CH63_553 PF13332 Hemagglutinin repeat CH63_553 PF05594 Haemagluttinin repeat CH63_553 PF05860 haemagglutination activity domain CH63_556 PF13018 Extended Signal Peptide of Type V secretion system CH63_556 PF05860 haemagglutination activity domain CH63_556 PF13332 Hemagglutinin repeat CH63_556 PF04829 Pre-toxin domain with VENN motif CH63_559 PF13332 Hemagglutinin repeat CH63_559 PF13018 Extended Signal Peptide of Type V secretion system CH63_559 PF04829 Pre-toxin domain with VENN motif CH63_559 PF05860 haemagglutination activity domain CH63_560 PF13332 Hemagglutinin repeat CH63_560 PF05860 haemagglutination activity domain CH63_560 PF04829 Pre-toxin domain with VENN motif CH63_560 PF13018 Extended Signal Peptide of Type V secretion system CH63_561 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH63_561 PF08479 POTRA domain, ShlB-type CH63_561 PF17287 POTRA domain CH63_562 PF00175 Oxidoreductase NAD-binding domain CH63_562 PF00111 2Fe-2S iron-sulfur cluster binding domain CH63_562 PF00970 Oxidoreductase FAD-binding domain CH63_565 PF02028 BCCT, betaine/carnitine/choline family transporter CH63_566 PF00180 Isocitrate/isopropylmalate dehydrogenase CH63_567 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_567 PF03466 LysR substrate binding domain CH63_568 PF00356 Bacterial regulatory proteins, lacI family CH63_569 PF02653 Branched-chain amino acid transport system / permease component CH63_570 PF00005 ABC transporter CH63_571 PF13407 Periplasmic binding protein domain CH63_572 PF08240 Alcohol dehydrogenase GroES-like domain CH63_572 PF00107 Zinc-binding dehydrogenase CH63_576 PF13505 Outer membrane protein beta-barrel domain CH63_577 PF00892 EamA-like transporter family CH63_579 PF13649 Methyltransferase domain CH63_580 PF00210 Ferritin-like domain CH63_582 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH63_583 PF00528 Binding-protein-dependent transport system inner membrane component CH63_584 PF00005 ABC transporter CH63_585 PF13426 PAS domain CH63_585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH63_585 PF08447 PAS fold CH63_586 PF00665 Integrase core domain CH63_586 PF02796 Helix-turn-helix domain of resolvase CH63_588 PF01695 IstB-like ATP binding protein CH63_589 PF05971 RNA methyltransferase CH63_590 PF07338 Protein of unknown function (DUF1471) CH63_591 PF02885 Glycosyl transferase family, helical bundle domain CH63_592 PF13193 AMP-binding enzyme C-terminal domain CH63_592 PF00501 AMP-binding enzyme CH63_593 PF13378 Enolase C-terminal domain-like CH63_594 PF00378 Enoyl-CoA hydratase/isomerase CH63_595 PF12697 Alpha/beta hydrolase family CH63_596 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH63_596 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH63_596 PF16582 Middle domain of thiamine pyrophosphate CH63_597 PF16582 Middle domain of thiamine pyrophosphate CH63_597 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH63_597 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH63_598 PF00425 chorismate binding enzyme CH63_6 PF01297 Zinc-uptake complex component A periplasmic CH63_600 PF05957 Bacterial protein of unknown function (DUF883) CH63_602 PF00920 Dehydratase family CH63_603 PF03928 Haem-degrading CH63_604 PF07690 Major Facilitator Superfamily CH63_605 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH63_605 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH63_606 PF00356 Bacterial regulatory proteins, lacI family CH63_608 PF00106 short chain dehydrogenase CH63_609 PF01202 Shikimate kinase CH63_610 PF04074 YhcH/YjgK/YiaL CH63_612 PF00361 Proton-conducting membrane transporter CH63_613 PF00361 Proton-conducting membrane transporter CH63_614 PF00361 Proton-conducting membrane transporter CH63_614 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH63_615 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CH63_616 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CH63_617 PF12838 4Fe-4S dicluster domain CH63_618 PF00146 NADH dehydrogenase CH63_619 PF01568 Molydopterin dinucleotide binding domain CH63_619 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH63_619 PF00384 Molybdopterin oxidoreductase CH63_619 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH63_620 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH63_620 PF10531 SLBB domain CH63_620 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH63_622 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CH63_622 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CH63_623 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH63_624 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CH63_625 PF03466 LysR substrate binding domain CH63_625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_626 PF00155 Aminotransferase class I and II CH63_628 PF03600 Citrate transporter CH63_628 PF02080 TrkA-C domain CH63_629 PF13419 Haloacid dehalogenase-like hydrolase CH63_630 PF03887 YfbU domain CH63_631 PF04217 Protein of unknown function, DUF412 CH63_632 PF00871 Acetokinase family CH63_633 PF01515 Phosphate acetyl/butaryl transferase CH63_633 PF07085 DRTGG domain CH63_634 PF00356 Bacterial regulatory proteins, lacI family CH63_634 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH63_635 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH63_637 PF00872 Transposase, Mutator family CH63_638 PF03611 PTS system sugar-specific permease component CH63_639 PF00293 NUDIX domain CH63_640 PF12850 Calcineurin-like phosphoesterase superfamily domain CH63_642 PF01370 NAD dependent epimerase/dehydratase family CH63_642 PF08338 Domain of unknown function (DUF1731) CH63_643 PF00005 ABC transporter CH63_644 PF00528 Binding-protein-dependent transport system inner membrane component CH63_645 PF00528 Binding-protein-dependent transport system inner membrane component CH63_646 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH63_647 PF02441 Flavoprotein CH63_648 PF00156 Phosphoribosyl transferase domain CH63_649 PF02674 Colicin V production protein CH63_650 PF05036 Sporulation related domain CH63_651 PF08245 Mur ligase middle domain CH63_651 PF02875 Mur ligase family, glutamate ligase domain CH63_652 PF17848 Acetyl-coA carboxylase zinc finger domain CH63_652 PF01039 Carboxyl transferase domain CH63_653 PF09335 SNARE associated Golgi protein CH63_654 PF01416 tRNA pseudouridine synthase CH63_655 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH63_655 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH63_656 PF11890 Domain of unknown function (DUF3410) CH63_656 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH63_656 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH63_658 PF00892 EamA-like transporter family CH63_660 PF00419 Fimbrial protein CH63_661 PF01177 Asp/Glu/Hydantoin racemase CH63_662 PF00109 Beta-ketoacyl synthase, N-terminal domain CH63_662 PF02801 Beta-ketoacyl synthase, C-terminal domain CH63_663 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CH63_663 PF01266 FAD dependent oxidoreductase CH63_664 PF08891 YfcL protein CH63_665 PF04315 Elongation factor P hydroxylase CH63_666 PF01925 Sulfite exporter TauE/SafE CH63_667 PF03411 Penicillin-insensitive murein endopeptidase CH63_668 PF01264 Chorismate synthase CH63_669 PF05175 Methyltransferase small domain CH63_670 PF01713 Smr domain CH63_671 PF00300 Histidine phosphatase superfamily (branch 1) CH63_672 PF00378 Enoyl-CoA hydratase/isomerase CH63_672 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH63_672 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH63_673 PF00108 Thiolase, N-terminal domain CH63_673 PF02803 Thiolase, C-terminal domain CH63_674 PF04175 Protein of unknown function (DUF406) CH63_675 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CH63_676 PF04333 MlaA lipoprotein CH63_677 PF03918 Cytochrome C biogenesis protein CH63_678 PF03918 Cytochrome C biogenesis protein CH63_679 PF08534 Redoxin CH63_680 PF01578 Cytochrome C assembly protein CH63_680 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CH63_681 PF03100 CcmE CH63_682 PF04995 Heme exporter protein D (CcmD) CH63_683 PF01578 Cytochrome C assembly protein CH63_684 PF03379 CcmB protein CH63_685 PF00005 ABC transporter CH63_688 PF04011 LemA family CH63_690 PF08274 PhnA Zinc-Ribbon CH63_690 PF03831 PhnA domain CH63_696 PF04717 Type VI secretion system, phage-baseplate injector CH63_7 PF01476 LysM domain CH63_7 PF01551 Peptidase family M23 CH63_7 PF08525 Opacity-associated protein A N-terminal motif CH63_700 PF01695 IstB-like ATP binding protein CH63_701 PF02796 Helix-turn-helix domain of resolvase CH63_701 PF00665 Integrase core domain CH63_709 PF13953 PapC C-terminal domain CH63_709 PF13954 PapC N-terminal domain CH63_709 PF00577 Outer membrane usher protein CH63_710 PF00872 Transposase, Mutator family CH63_711 PF13954 PapC N-terminal domain CH63_711 PF13953 PapC C-terminal domain CH63_711 PF00577 Outer membrane usher protein CH63_712 PF02753 Pili assembly chaperone PapD, C-terminal domain CH63_712 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH63_713 PF16970 Type-1 fimbrial protein, A CH63_714 PF10431 C-terminal, D2-small domain, of ClpB protein CH63_714 PF17871 AAA lid domain CH63_714 PF07724 AAA domain (Cdc48 subfamily) CH63_714 PF00004 ATPase family associated with various cellular activities (AAA) CH63_724 PF13406 Transglycosylase SLT domain CH63_726 PF00528 Binding-protein-dependent transport system inner membrane component CH63_727 PF00528 Binding-protein-dependent transport system inner membrane component CH63_728 PF00005 ABC transporter CH63_730 PF05638 Type VI secretion system effector, Hcp CH63_732 PF01568 Molydopterin dinucleotide binding domain CH63_732 PF00384 Molybdopterin oxidoreductase CH63_732 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH63_733 PF13247 4Fe-4S dicluster domain CH63_733 PF12800 4Fe-4S binding domain CH63_734 PF04976 DMSO reductase anchor subunit (DmsC) CH63_735 PF02613 Nitrate reductase delta subunit CH63_737 PF05643 Putative bacterial lipoprotein (DUF799) CH63_739 PF03783 Curli production assembly/transport component CsgG CH63_741 PF01292 Prokaryotic cytochrome b561 CH63_742 PF00155 Aminotransferase class I and II CH63_743 PF07350 Protein of unknown function (DUF1479) CH63_744 PF02685 Glucokinase CH63_746 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_746 PF03466 LysR substrate binding domain CH63_747 PF00248 Aldo/keto reductase family CH63_749 PF01566 Natural resistance-associated macrophage protein CH63_750 PF07670 Nucleoside recognition CH63_750 PF01773 Na+ dependent nucleoside transporter N-terminus CH63_750 PF07662 Na+ dependent nucleoside transporter C-terminus CH63_754 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH63_755 PF01797 Transposase IS200 like CH63_761 PF12843 Putative quorum-sensing-regulated virulence factor CH63_762 PF03120 NAD-dependent DNA ligase OB-fold domain CH63_762 PF00533 BRCA1 C Terminus (BRCT) domain CH63_762 PF01653 NAD-dependent DNA ligase adenylation domain CH63_762 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CH63_762 PF12826 Helix-hairpin-helix motif CH63_763 PF04354 ZipA, C-terminal FtsZ-binding domain CH63_765 PF00291 Pyridoxal-phosphate dependent enzyme CH63_766 PF00381 PTS HPr component phosphorylation site CH63_767 PF05524 PEP-utilising enzyme, N-terminal CH63_767 PF00391 PEP-utilising enzyme, mobile domain CH63_767 PF02896 PEP-utilising enzyme, TIM barrel domain CH63_768 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH63_770 PF00665 Integrase core domain CH63_770 PF02796 Helix-turn-helix domain of resolvase CH63_771 PF01695 IstB-like ATP binding protein CH63_772 PF01695 IstB-like ATP binding protein CH63_774 PF00512 His Kinase A (phospho-acceptor) domain CH63_774 PF00672 HAMP domain CH63_774 PF16527 Two-component sensor protein CpxA, periplasmic domain CH63_774 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH63_775 PF00486 Transcriptional regulatory protein, C terminal CH63_775 PF00072 Response regulator receiver domain CH63_776 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH63_777 PF02687 FtsX-like permease family CH63_777 PF12704 MacB-like periplasmic core domain CH63_777 PF00005 ABC transporter CH63_778 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH63_778 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH63_779 PF00474 Sodium:solute symporter family CH63_781 PF05195 Aminopeptidase P, N-terminal domain CH63_781 PF00557 Metallopeptidase family M24 CH63_783 PF00155 Aminotransferase class I and II CH63_785 PF00512 His Kinase A (phospho-acceptor) domain CH63_785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH63_785 PF00672 HAMP domain CH63_786 PF00072 Response regulator receiver domain CH63_786 PF00486 Transcriptional regulatory protein, C terminal CH63_788 PF00291 Pyridoxal-phosphate dependent enzyme CH63_789 PF00005 ABC transporter CH63_790 PF00528 Binding-protein-dependent transport system inner membrane component CH63_791 PF00528 Binding-protein-dependent transport system inner membrane component CH63_794 PF07690 Major Facilitator Superfamily CH63_795 PF01380 SIS domain CH63_795 PF01418 Helix-turn-helix domain, rpiR family CH63_796 PF04074 YhcH/YjgK/YiaL CH63_797 PF00480 ROK family CH63_798 PF12468 Type III secretion system leucine rich repeat protein CH63_799 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CH63_8 PF03279 Bacterial lipid A biosynthesis acyltransferase CH63_80 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CH63_800 PF00701 Dihydrodipicolinate synthetase family CH63_801 PF04261 Dyp-type peroxidase family CH63_802 PF06572 Protein of unknown function (DUF1131) CH63_803 PF04076 Bacterial OB fold (BOF) protein CH63_804 PF13018 Extended Signal Peptide of Type V secretion system CH63_804 PF03212 Pertactin CH63_804 PF03797 Autotransporter beta-domain CH63_804 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH63_807 PF00583 Acetyltransferase (GNAT) family CH63_808 PF01218 Coproporphyrinogen III oxidase CH63_809 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CH63_81 PF00872 Transposase, Mutator family CH63_810 PF01515 Phosphate acetyl/butaryl transferase CH63_810 PF03949 Malic enzyme, NAD binding domain CH63_810 PF00390 Malic enzyme, N-terminal domain CH63_811 PF00293 NUDIX domain CH63_812 PF03264 NapC/NirT cytochrome c family, N-terminal region CH63_813 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CH63_814 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH63_814 PF00384 Molybdopterin oxidoreductase CH63_814 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH63_814 PF01568 Molydopterin dinucleotide binding domain CH63_815 PF03927 NapD protein CH63_816 PF13187 4Fe-4S dicluster domain CH63_816 PF00037 4Fe-4S binding domain CH63_816 PF12800 4Fe-4S binding domain CH63_817 PF00072 Response regulator receiver domain CH63_817 PF00196 Bacterial regulatory proteins, luxR family CH63_819 PF00873 AcrB/AcrD/AcrF family CH63_820 PF00873 AcrB/AcrD/AcrF family CH63_821 PF00873 AcrB/AcrD/AcrF family CH63_823 PF04307 LexA-binding, inner membrane-associated putative hydrolase CH63_824 PF13186 Iron-sulfur cluster-binding domain CH63_824 PF04055 Radical SAM superfamily CH63_825 PF00884 Sulfatase CH63_826 PF08402 TOBE domain CH63_826 PF00005 ABC transporter CH63_827 PF00528 Binding-protein-dependent transport system inner membrane component CH63_83 PF00266 Aminotransferase class-V CH63_830 PF03960 ArsC family CH63_831 PF01546 Peptidase family M20/M25/M40 CH63_831 PF07687 Peptidase dimerisation domain CH63_832 PF02557 D-alanyl-D-alanine carboxypeptidase CH63_833 PF13980 Uncharacterised protein family (UPF0370) CH63_834 PF05127 Helicase CH63_834 PF17176 tRNA-binding domain CH63_834 PF13718 GNAT acetyltransferase 2 CH63_834 PF08351 Domain of unknown function (DUF1726) CH63_835 PF04284 Protein of unknown function (DUF441) CH63_836 PF04228 Putative neutral zinc metallopeptidase CH63_837 PF01259 SAICAR synthetase CH63_838 PF01797 Transposase IS200 like CH63_839 PF06804 NlpB/DapX lipoprotein CH63_840 PF00701 Dihydrodipicolinate synthetase family CH63_841 PF01842 ACT domain CH63_842 PF00578 AhpC/TSA family CH63_845 PF01594 AI-2E family transporter CH63_846 PF01435 Peptidase family M48 CH63_846 PF07720 Tetratricopeptide repeat CH63_847 PF03960 ArsC family CH63_848 PF00308 Bacterial dnaA protein CH63_849 PF01797 Transposase IS200 like CH63_851 PF02769 AIR synthase related protein, C-terminal domain CH63_851 PF00586 AIR synthase related protein, N-terminal domain CH63_852 PF00551 Formyl transferase CH63_853 PF13302 Acetyltransferase (GNAT) domain CH63_857 PF00005 ABC transporter CH63_858 PF00528 Binding-protein-dependent transport system inner membrane component CH63_86 PF02600 Disulfide bond formation protein DsbB CH63_861 PF02503 Polyphosphate kinase middle domain CH63_861 PF13089 Polyphosphate kinase N-terminal domain CH63_861 PF17941 Polyphosphate kinase C-terminal domain 1 CH63_861 PF13090 Polyphosphate kinase C-terminal domain 2 CH63_862 PF02541 Ppx/GppA phosphatase family CH63_863 PF01769 Divalent cation transporter CH63_863 PF00571 CBS domain CH63_863 PF03448 MgtE intracellular N domain CH63_864 PF00012 Hsp70 protein CH63_865 PF00528 Binding-protein-dependent transport system inner membrane component CH63_866 PF00528 Binding-protein-dependent transport system inner membrane component CH63_868 PF00202 Aminotransferase class-III CH63_869 PF00392 Bacterial regulatory proteins, gntR family CH63_869 PF00155 Aminotransferase class I and II CH63_87 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CH63_870 PF08402 TOBE domain CH63_870 PF00005 ABC transporter CH63_871 PF13533 Biotin-lipoyl like CH63_872 PF00873 AcrB/AcrD/AcrF family CH63_873 PF00873 AcrB/AcrD/AcrF family CH63_874 PF07690 Major Facilitator Superfamily CH63_875 PF00672 HAMP domain CH63_875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH63_875 PF00512 His Kinase A (phospho-acceptor) domain CH63_876 PF00486 Transcriptional regulatory protein, C terminal CH63_876 PF00072 Response regulator receiver domain CH63_877 PF07411 Domain of unknown function (DUF1508) CH63_879 PF00781 Diacylglycerol kinase catalytic domain CH63_88 PF07840 FadR C-terminal domain CH63_88 PF00392 Bacterial regulatory proteins, gntR family CH63_884 PF08543 Phosphomethylpyrimidine kinase CH63_887 PF00872 Transposase, Mutator family CH63_89 PF04293 SpoVR like protein CH63_892 PF13358 DDE superfamily endonuclease CH63_892 PF13592 Winged helix-turn helix CH63_893 PF01548 Transposase CH63_893 PF02371 Transposase IS116/IS110/IS902 family CH63_894 PF00271 Helicase conserved C-terminal domain CH63_894 PF00270 DEAD/DEAH box helicase CH63_895 PF09209 Tetracyclin repressor-like, C-terminal domain CH63_895 PF00440 Bacterial regulatory proteins, tetR family CH63_896 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH63_897 PF00005 ABC transporter CH63_9 PF02887 Pyruvate kinase, alpha/beta domain CH63_9 PF00224 Pyruvate kinase, barrel domain CH63_90 PF01266 FAD dependent oxidoreductase CH63_901 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH63_902 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_902 PF03466 LysR substrate binding domain CH63_903 PF00072 Response regulator receiver domain CH63_903 PF00158 Sigma-54 interaction domain CH63_903 PF02954 Bacterial regulatory protein, Fis family CH63_904 PF00512 His Kinase A (phospho-acceptor) domain CH63_904 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH63_905 PF13801 Heavy-metal resistance CH63_906 PF03825 Nucleoside H+ symporter CH63_908 PF03825 Nucleoside H+ symporter CH63_909 PF01048 Phosphorylase superfamily CH63_91 PF07690 Major Facilitator Superfamily CH63_911 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_911 PF03466 LysR substrate binding domain CH63_912 PF02028 BCCT, betaine/carnitine/choline family transporter CH63_913 PF00440 Bacterial regulatory proteins, tetR family CH63_913 PF13977 BetI-type transcriptional repressor, C-terminal CH63_914 PF00171 Aldehyde dehydrogenase family CH63_915 PF05199 GMC oxidoreductase CH63_915 PF00732 GMC oxidoreductase CH63_916 PF01797 Transposase IS200 like CH63_917 PF01027 Inhibitor of apoptosis-promoting Bax1 CH63_918 PF02391 MoaE protein CH63_919 PF02597 ThiS family CH63_92 PF05726 Pirin C-terminal cupin domain CH63_92 PF02678 Pirin CH63_920 PF01967 MoaC family CH63_921 PF06463 Molybdenum Cofactor Synthesis C CH63_921 PF04055 Radical SAM superfamily CH63_923 PF01933 Uncharacterised protein family UPF0052 CH63_924 PF09905 DNA-binding protein VF530 CH63_925 PF00271 Helicase conserved C-terminal domain CH63_925 PF12344 Ultra-violet resistance protein B CH63_925 PF04851 Type III restriction enzyme, res subunit CH63_925 PF17757 UvrB interaction domain CH63_925 PF02151 UvrB/uvrC motif CH63_928 PF08241 Methyltransferase domain CH63_929 PF00155 Aminotransferase class I and II CH63_93 PF03466 LysR substrate binding domain CH63_93 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_930 PF06968 Biotin and Thiamin Synthesis associated domain CH63_930 PF04055 Radical SAM superfamily CH63_931 PF00202 Aminotransferase class-III CH63_932 PF10282 Lactonase, 7-bladed beta-propeller CH63_934 PF00005 ABC transporter CH63_934 PF03459 TOBE domain CH63_935 PF00528 Binding-protein-dependent transport system inner membrane component CH63_937 PF10766 Multidrug efflux pump-associated protein AcrZ CH63_938 PF03459 TOBE domain CH63_938 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH63_939 PF00005 ABC transporter CH63_942 PF16363 GDP-mannose 4,6 dehydratase CH63_943 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CH63_943 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CH63_944 PF10509 Galactokinase galactose-binding signature CH63_944 PF08544 GHMP kinases C terminal CH63_944 PF00288 GHMP kinases N terminal domain CH63_946 PF01263 Aldose 1-epimerase CH63_948 PF00300 Histidine phosphatase superfamily (branch 1) CH63_949 PF00793 DAHP synthetase I family CH63_95 PF04285 Protein of unknown function (DUF444) CH63_951 PF01545 Cation efflux family CH63_952 PF04973 Nicotinamide mononucleotide transporter CH63_953 PF02445 Quinolinate synthetase A protein CH63_957 PF13174 Tetratricopeptide repeat CH63_957 PF16331 TolA binding protein trimerisation CH63_958 PF00691 OmpA family CH63_959 PF04052 TolB amino-terminal domain CH63_959 PF07676 WD40-like Beta Propeller Repeat CH63_96 PF08298 PrkA AAA domain CH63_96 PF06798 PrkA serine protein kinase C-terminal domain CH63_960 PF06519 TolA C-terminal CH63_960 PF06519 TolA C-terminal CH63_961 PF02472 Biopolymer transport protein ExbD/TolR CH63_962 PF01618 MotA/TolQ/ExbB proton channel family CH63_963 PF03061 Thioesterase superfamily CH63_964 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) CH63_965 PF08173 Membrane bound YbgT-like protein CH63_966 PF02322 Cytochrome bd terminal oxidase subunit II CH63_967 PF01654 Cytochrome bd terminal oxidase subunit I CH63_968 PF00549 CoA-ligase CH63_968 PF02629 CoA binding domain CH63_969 PF00549 CoA-ligase CH63_969 PF08442 ATP-grasp domain CH63_97 PF06629 MltA-interacting protein MipA CH63_970 PF00364 Biotin-requiring enzyme CH63_970 PF02817 e3 binding domain CH63_970 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH63_971 PF16870 2-oxoglutarate dehydrogenase C-terminal CH63_971 PF02779 Transketolase, pyrimidine binding domain CH63_971 PF00676 Dehydrogenase E1 component CH63_971 PF16078 2-oxoglutarate dehydrogenase N-terminus CH63_972 PF13085 2Fe-2S iron-sulfur cluster binding domain CH63_973 PF02910 Fumarate reductase flavoprotein C-term CH63_973 PF00890 FAD binding domain CH63_974 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH63_975 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH63_976 PF00285 Citrate synthase, C-terminal domain CH63_977 PF01025 GrpE CH63_978 PF01513 ATP-NAD kinase CH63_979 PF02463 RecF/RecN/SMC N terminal domain CH63_98 PF01263 Aldose 1-epimerase CH63_980 PF04355 SmpA / OmlA family CH63_981 PF03658 RnfH family Ubiquitin CH63_982 PF03364 Polyketide cyclase / dehydrase and lipid transport CH63_983 PF01668 SmpB protein CH63_985 PF13356 Arm DNA-binding domain CH63_985 PF00589 Phage integrase family CH63_99 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH63_99 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH63_995 PF05973 Phage derived protein Gp49-like (DUF891) CH63_997 PF02796 Helix-turn-helix domain of resolvase CH63_997 PF00665 Integrase core domain CH63_998 PF01695 IstB-like ATP binding protein