locus-tag class description CH59_1 PF00083 Sugar (and other) transporter CH59_10 PF00924 Mechanosensitive ion channel CH59_100 PF01695 IstB-like ATP binding protein CH59_1003 PF03551 Transcriptional regulator PadR-like family CH59_1004 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family CH59_1006 PF13407 Periplasmic binding protein domain CH59_1007 PF02653 Branched-chain amino acid transport system / permease component CH59_1008 PF00005 ABC transporter CH59_1009 PF17912 MalK OB fold domain CH59_1009 PF00005 ABC transporter CH59_101 PF02796 Helix-turn-helix domain of resolvase CH59_101 PF00665 Integrase core domain CH59_1010 PF13416 Bacterial extracellular solute-binding protein CH59_1011 PF00528 Binding-protein-dependent transport system inner membrane component CH59_1012 PF00528 Binding-protein-dependent transport system inner membrane component CH59_1013 PF07745 Glycosyl hydrolase family 53 CH59_1014 PF02449 Beta-galactosidase CH59_1014 PF08533 Beta-galactosidase C-terminal domain CH59_1014 PF08532 Beta-galactosidase trimerisation domain CH59_1015 PF00367 phosphotransferase system, EIIB CH59_1015 PF02378 Phosphotransferase system, EIIC CH59_1016 PF02264 LamB porin CH59_1017 PF00356 Bacterial regulatory proteins, lacI family CH59_1018 PF01055 Glycosyl hydrolases family 31 CH59_1018 PF17137 Domain of unknown function (DUF5110) CH59_1018 PF13802 Galactose mutarotase-like CH59_1018 PF16338 Domain of unknown function (DUF4968) CH59_1019 PF07690 Major Facilitator Superfamily CH59_1020 PF00356 Bacterial regulatory proteins, lacI family CH59_1023 PF01116 Fructose-bisphosphate aldolase class-II CH59_1025 PF00884 Sulfatase CH59_1026 PF04055 Radical SAM superfamily CH59_1026 PF13186 Iron-sulfur cluster-binding domain CH59_1029 PF01979 Amidohydrolase family CH59_103 PF01797 Transposase IS200 like CH59_1030 PF03610 PTS system fructose IIA component CH59_1031 PF03613 PTS system mannose/fructose/sorbose family IID component CH59_1032 PF03609 PTS system sorbose-specific iic component CH59_1033 PF03830 PTS system sorbose subfamily IIB component CH59_1034 PF01380 SIS domain CH59_1035 PF08013 Tagatose 6 phosphate kinase CH59_1036 PF00455 DeoR C terminal sensor domain CH59_1036 PF08220 DeoR-like helix-turn-helix domain CH59_1037 PF00884 Sulfatase CH59_1038 PF01797 Transposase IS200 like CH59_1039 PF09093 Lyase, catalytic CH59_1039 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain CH59_1039 PF09092 Lyase, N terminal CH59_1039 PF02278 Polysaccharide lyase family 8, super-sandwich domain CH59_104 PF00356 Bacterial regulatory proteins, lacI family CH59_104 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH59_1043 PF00484 Carbonic anhydrase CH59_1046 PF03958 Bacterial type II/III secretion system short domain CH59_1046 PF00263 Bacterial type II and III secretion system protein CH59_1049 PF00482 Type II secretion system (T2SS), protein F CH59_105 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH59_1050 PF07963 Prokaryotic N-terminal methylation motif CH59_1050 PF08334 Type II secretion system (T2SS), protein G CH59_1057 PF06750 Bacterial Peptidase A24 N-terminal domain CH59_1057 PF01478 Type IV leader peptidase family CH59_1062 PF00672 HAMP domain CH59_1062 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH59_1062 PF02203 Tar ligand binding domain homologue CH59_1064 PF03466 LysR substrate binding domain CH59_1064 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_1065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_1065 PF03466 LysR substrate binding domain CH59_1066 PF07690 Major Facilitator Superfamily CH59_1067 PF00356 Bacterial regulatory proteins, lacI family CH59_1068 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CH59_1068 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH59_1069 PF01568 Molydopterin dinucleotide binding domain CH59_1069 PF00384 Molybdopterin oxidoreductase CH59_107 PF00872 Transposase, Mutator family CH59_1070 PF00501 AMP-binding enzyme CH59_1070 PF01553 Acyltransferase CH59_1070 PF13193 AMP-binding enzyme C-terminal domain CH59_1071 PF07690 Major Facilitator Superfamily CH59_1074 PF00248 Aldo/keto reductase family CH59_1075 PF02976 DNA mismatch repair enzyme MutH CH59_1076 PF00293 NUDIX domain CH59_1077 PF05524 PEP-utilising enzyme, N-terminal CH59_1077 PF00391 PEP-utilising enzyme, mobile domain CH59_1077 PF01590 GAF domain CH59_1077 PF02896 PEP-utilising enzyme, TIM barrel domain CH59_1078 PF01790 Prolipoprotein diacylglyceryl transferase CH59_1079 PF00303 Thymidylate synthase CH59_108 PF07883 Cupin domain CH59_1084 PF01695 IstB-like ATP binding protein CH59_1085 PF00501 AMP-binding enzyme CH59_1085 PF00550 Phosphopantetheine attachment site CH59_1085 PF00668 Condensation domain CH59_1085 PF08242 Methyltransferase domain CH59_1086 PF13193 AMP-binding enzyme C-terminal domain CH59_1086 PF00668 Condensation domain CH59_1086 PF00501 AMP-binding enzyme CH59_1087 PF00668 Condensation domain CH59_1087 PF08242 Methyltransferase domain CH59_1087 PF00501 AMP-binding enzyme CH59_1087 PF00550 Phosphopantetheine attachment site CH59_109 PF04962 KduI/IolB family CH59_1090 PF00975 Thioesterase domain CH59_1092 PF00664 ABC transporter transmembrane region CH59_1092 PF04954 Siderophore-interacting protein CH59_1092 PF08021 Siderophore-interacting FAD-binding domain CH59_1092 PF00005 ABC transporter CH59_1093 PF00005 ABC transporter CH59_1093 PF00664 ABC transporter transmembrane region CH59_1097 PF02447 GntP family permease CH59_1099 PF12951 Passenger-associated-transport-repeat CH59_1100 PF12951 Passenger-associated-transport-repeat CH59_1101 PF04717 Type VI secretion system, phage-baseplate injector CH59_1103 PF03527 RHS protein CH59_1103 PF05593 RHS Repeat CH59_1106 PF00939 Sodium:sulfate symporter transmembrane region CH59_1107 PF00356 Bacterial regulatory proteins, lacI family CH59_1108 PF13333 Integrase core domain CH59_1108 PF13276 HTH-like domain CH59_1108 PF00665 Integrase core domain CH59_111 PF06917 Periplasmic pectate lyase CH59_1111 PF05433 Glycine zipper 2TM domain CH59_1115 PF00691 OmpA family CH59_1115 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH59_1116 PF01618 MotA/TolQ/ExbB proton channel family CH59_1117 PF04542 Sigma-70 region 2 CH59_1117 PF04545 Sigma-70, region 4 CH59_112 PF00528 Binding-protein-dependent transport system inner membrane component CH59_1122 PF07196 Flagellin hook IN motif CH59_1122 PF07195 Flagellar hook-associated protein 2 C-terminus CH59_1122 PF02465 Flagellar hook-associated protein 2 N-terminus CH59_1123 PF00700 Bacterial flagellin C-terminal helical region CH59_1123 PF00669 Bacterial flagellin N-terminal helical region CH59_1124 PF00669 Bacterial flagellin N-terminal helical region CH59_1124 PF00700 Bacterial flagellin C-terminal helical region CH59_1125 PF00700 Bacterial flagellin C-terminal helical region CH59_1125 PF00669 Bacterial flagellin N-terminal helical region CH59_1126 PF00486 Transcriptional regulatory protein, C terminal CH59_1126 PF18500 CadC C-terminal domain 1 CH59_113 PF00528 Binding-protein-dependent transport system inner membrane component CH59_1130 PF00460 Flagella basal body rod protein CH59_1130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH59_1132 PF02119 Flagellar P-ring protein CH59_1133 PF02107 Flagellar L-ring protein CH59_1134 PF00460 Flagella basal body rod protein CH59_1134 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH59_1135 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH59_1135 PF00460 Flagella basal body rod protein CH59_1136 PF01797 Transposase IS200 like CH59_1138 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH59_1138 PF00460 Flagella basal body rod protein CH59_1138 PF07559 Flagellar basal body protein FlaE CH59_1139 PF03963 Flagellar hook capping protein - N-terminal region CH59_1139 PF13860 FlgD Ig-like domain CH59_1139 PF13861 FlgD Tudor-like domain CH59_114 PF03459 TOBE domain CH59_114 PF00005 ABC transporter CH59_114 PF17912 MalK OB fold domain CH59_1140 PF00460 Flagella basal body rod protein CH59_1140 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH59_1141 PF00460 Flagella basal body rod protein CH59_1142 PF13144 Chaperone for flagella basal body P-ring formation CH59_1146 PF18269 T3SS EscN ATPase C-terminal domain CH59_1146 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH59_1149 PF08345 Flagellar M-ring protein C-terminal CH59_1149 PF01514 Secretory protein of YscJ/FliF family CH59_115 PF01547 Bacterial extracellular solute-binding protein CH59_1150 PF02049 Flagellar hook-basal body complex protein FliE CH59_1151 PF00158 Sigma-54 interaction domain CH59_1151 PF00072 Response regulator receiver domain CH59_1151 PF02954 Bacterial regulatory protein, Fis family CH59_1153 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH59_1154 PF00813 FliP family CH59_1155 PF01313 Bacterial export proteins, family 3 CH59_1156 PF01311 Bacterial export proteins, family 1 CH59_1157 PF01312 FlhB HrpN YscU SpaS Family CH59_1158 PF00771 FHIPEP family CH59_1159 PF00771 FHIPEP family CH59_116 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH59_1162 PF01497 Periplasmic binding protein CH59_1163 PF00419 Fimbrial protein CH59_1163 PF09222 Fimbrial adhesin F17-AG, lectin domain CH59_1164 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH59_1164 PF02753 Pili assembly chaperone PapD, C-terminal domain CH59_1165 PF13953 PapC C-terminal domain CH59_1165 PF00577 Outer membrane usher protein CH59_1165 PF13954 PapC N-terminal domain CH59_1166 PF01797 Transposase IS200 like CH59_1167 PF01797 Transposase IS200 like CH59_117 PF04307 LexA-binding, inner membrane-associated putative hydrolase CH59_1170 PF04972 BON domain CH59_1170 PF00263 Bacterial type II and III secretion system protein CH59_1170 PF13629 Pilus formation protein N terminal region CH59_1171 PF04972 BON domain CH59_1171 PF00263 Bacterial type II and III secretion system protein CH59_1171 PF13629 Pilus formation protein N terminal region CH59_1174 PF00437 Type II/IV secretion system protein CH59_1181 PF02472 Biopolymer transport protein ExbD/TolR CH59_1183 PF01618 MotA/TolQ/ExbB proton channel family CH59_1184 PF01053 Cys/Met metabolism PLP-dependent enzyme CH59_1185 PF09335 SNARE associated Golgi protein CH59_1186 PF06719 AraC-type transcriptional regulator N-terminus CH59_1186 PF12833 Helix-turn-helix domain CH59_1187 PF00465 Iron-containing alcohol dehydrogenase CH59_1188 PF00248 Aldo/keto reductase family CH59_1189 PF08497 Radical SAM N-terminal CH59_1189 PF11842 Domain of unknown function (DUF3362) CH59_1189 PF04055 Radical SAM superfamily CH59_119 PF01510 N-acetylmuramoyl-L-alanine amidase CH59_1190 PF11842 Domain of unknown function (DUF3362) CH59_1190 PF04055 Radical SAM superfamily CH59_1190 PF08497 Radical SAM N-terminal CH59_1191 PF07731 Multicopper oxidase CH59_1191 PF07732 Multicopper oxidase CH59_1192 PF01553 Acyltransferase CH59_1193 PF03989 DNA gyrase C-terminal domain, beta-propeller CH59_1193 PF00521 DNA gyrase/topoisomerase IV, subunit A CH59_1194 PF02525 Flavodoxin-like fold CH59_1195 PF03466 LysR substrate binding domain CH59_1195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_1196 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_1196 PF00204 DNA gyrase B CH59_1196 PF01751 Toprim domain CH59_1196 PF00986 DNA gyrase B subunit, carboxyl terminus CH59_1197 PF05728 Uncharacterised protein family (UPF0227) CH59_1198 PF00149 Calcineurin-like phosphoesterase CH59_1199 PF06853 Protein of unknown function (DUF1249) CH59_120 PF09339 IclR helix-turn-helix domain CH59_120 PF01614 Bacterial transcriptional regulator CH59_1200 PF00293 NUDIX domain CH59_1201 PF02321 Outer membrane efflux protein CH59_1203 PF06693 Protein of unknown function (DUF1190) CH59_1204 PF03738 Glutathionylspermidine synthase preATP-grasp CH59_1205 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH59_1206 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CH59_1208 PF04380 Membrane fusogenic activity CH59_1209 PF13520 Amino acid permease CH59_121 PF14583 Oligogalacturonate lyase CH59_1210 PF00294 pfkB family carbohydrate kinase CH59_1210 PF01467 Cytidylyltransferase-like CH59_1211 PF03710 Glutamate-ammonia ligase adenylyltransferase CH59_1211 PF08335 GlnD PII-uridylyltransferase CH59_1212 PF01928 CYTH domain CH59_1213 PF08239 Bacterial SH3 domain CH59_1214 PF01743 Poly A polymerase head domain CH59_1214 PF12627 Probable RNA and SrmB- binding site of polymerase A CH59_1214 PF01966 HD domain CH59_1215 PF02673 Bacitracin resistance protein BacA CH59_1216 PF02152 Dihydroneopterin aldolase CH59_1217 PF02660 Glycerol-3-phosphate acyltransferase CH59_1218 PF00814 Glycoprotease family CH59_1219 PF01165 Ribosomal protein S21 CH59_122 PF07690 Major Facilitator Superfamily CH59_1220 PF01807 CHC2 zinc finger CH59_1220 PF08275 DNA primase catalytic core, N-terminal domain CH59_1220 PF10410 DnaB-helicase binding domain of primase CH59_1220 PF08278 DNA primase DnaG DnaB-binding CH59_1221 PF04545 Sigma-70, region 4 CH59_1221 PF00140 Sigma-70 factor, region 1.2 CH59_1221 PF03979 Sigma-70 factor, region 1.1 CH59_1221 PF04542 Sigma-70 region 2 CH59_1221 PF04539 Sigma-70 region 3 CH59_1221 PF04546 Sigma-70, non-essential region CH59_1223 PF01695 IstB-like ATP binding protein CH59_1224 PF02796 Helix-turn-helix domain of resolvase CH59_1224 PF00665 Integrase core domain CH59_123 PF02753 Pili assembly chaperone PapD, C-terminal domain CH59_123 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH59_1234 PF03466 LysR substrate binding domain CH59_1234 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_1238 PF01042 Endoribonuclease L-PSP CH59_1243 PF01797 Transposase IS200 like CH59_1246 PF00529 HlyD membrane-fusion protein of T1SS CH59_1246 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH59_1247 PF04632 Fusaric acid resistance protein family CH59_1249 PF01915 Glycosyl hydrolase family 3 C-terminal domain CH59_1249 PF00933 Glycosyl hydrolase family 3 N terminal domain CH59_1249 PF14310 Fibronectin type III-like domain CH59_125 PF00577 Outer membrane usher protein CH59_125 PF13954 PapC N-terminal domain CH59_125 PF13953 PapC C-terminal domain CH59_1251 PF00528 Binding-protein-dependent transport system inner membrane component CH59_1252 PF00528 Binding-protein-dependent transport system inner membrane component CH59_1253 PF13416 Bacterial extracellular solute-binding protein CH59_1254 PF00356 Bacterial regulatory proteins, lacI family CH59_1255 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CH59_1256 PF03459 TOBE domain CH59_1256 PF00005 ABC transporter CH59_1256 PF17912 MalK OB fold domain CH59_126 PF02753 Pili assembly chaperone PapD, C-terminal domain CH59_126 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH59_1260 PF13018 Extended Signal Peptide of Type V secretion system CH59_1260 PF05860 haemagglutination activity domain CH59_1260 PF04829 Pre-toxin domain with VENN motif CH59_1260 PF13332 Hemagglutinin repeat CH59_1262 PF13018 Extended Signal Peptide of Type V secretion system CH59_1262 PF13332 Hemagglutinin repeat CH59_1262 PF04829 Pre-toxin domain with VENN motif CH59_1262 PF05860 haemagglutination activity domain CH59_1266 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH59_1266 PF08479 POTRA domain, ShlB-type CH59_1266 PF17287 POTRA domain CH59_1267 PF00092 von Willebrand factor type A domain CH59_1268 PF02342 TerD domain CH59_127 PF00419 Fimbrial protein CH59_1270 PF00092 von Willebrand factor type A domain CH59_1273 PF03729 Short repeat of unknown function (DUF308) CH59_1274 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH59_1274 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH59_1275 PF05175 Methyltransferase small domain CH59_1276 PF03797 Autotransporter beta-domain CH59_1277 PF01863 Protein of unknown function DUF45 CH59_1278 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH59_1279 PF00375 Sodium:dicarboxylate symporter family CH59_128 PF01435 Peptidase family M48 CH59_1281 PF01797 Transposase IS200 like CH59_1282 PF10688 Bacterial inner membrane protein CH59_1283 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CH59_1283 PF08666 SAF domain CH59_1284 PF08125 Mannitol dehydrogenase C-terminal domain CH59_1284 PF01232 Mannitol dehydrogenase Rossmann domain CH59_1285 PF02614 Glucuronate isomerase CH59_1286 PF07690 Major Facilitator Superfamily CH59_1287 PF00392 Bacterial regulatory proteins, gntR family CH59_1287 PF07729 FCD domain CH59_1289 PF09335 SNARE associated Golgi protein CH59_1290 PF13721 SecD export protein N-terminal TM region CH59_1292 PF05957 Bacterial protein of unknown function (DUF883) CH59_1293 PF07332 Putative Actinobacterial Holin-X, holin superfamily III CH59_1295 PF07681 DoxX CH59_1296 PF13409 Glutathione S-transferase, N-terminal domain CH59_1297 PF00665 Integrase core domain CH59_1297 PF02796 Helix-turn-helix domain of resolvase CH59_1298 PF01695 IstB-like ATP binding protein CH59_1299 PF00293 NUDIX domain CH59_130 PF11818 C-terminal domain of tail specific protease (DUF3340) CH59_130 PF00595 PDZ domain CH59_130 PF17804 Tail specific protease N-terminal domain CH59_130 PF03572 Peptidase family S41 CH59_1300 PF07516 SecA Wing and Scaffold domain CH59_1300 PF07517 SecA DEAD-like domain CH59_1300 PF01043 SecA preprotein cross-linking domain CH59_1300 PF02810 SEC-C motif CH59_1301 PF06558 Secretion monitor precursor protein (SecM) CH59_1303 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CH59_1304 PF00091 Tubulin/FtsZ family, GTPase domain CH59_1304 PF12327 FtsZ family, C-terminal domain CH59_1305 PF02491 SHS2 domain inserted in FTSA CH59_1306 PF08478 POTRA domain, FtsQ-type CH59_1306 PF03799 Cell division protein FtsQ CH59_1307 PF07478 D-ala D-ala ligase C-terminus CH59_1307 PF01820 D-ala D-ala ligase N-terminus CH59_1308 PF02875 Mur ligase family, glutamate ligase domain CH59_1308 PF08245 Mur ligase middle domain CH59_1308 PF01225 Mur ligase family, catalytic domain CH59_1309 PF03033 Glycosyltransferase family 28 N-terminal domain CH59_1309 PF04101 Glycosyltransferase family 28 C-terminal domain CH59_131 PF04352 ProQ/FINO family CH59_131 PF17516 ProQ C-terminal domain CH59_1310 PF01098 Cell cycle protein CH59_1311 PF08245 Mur ligase middle domain CH59_1311 PF02875 Mur ligase family, glutamate ligase domain CH59_1312 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CH59_1312 PF00953 Glycosyl transferase family 4 CH59_1313 PF08245 Mur ligase middle domain CH59_1313 PF01225 Mur ligase family, catalytic domain CH59_1313 PF02875 Mur ligase family, glutamate ligase domain CH59_1314 PF02875 Mur ligase family, glutamate ligase domain CH59_1314 PF01225 Mur ligase family, catalytic domain CH59_1314 PF08245 Mur ligase middle domain CH59_1315 PF00905 Penicillin binding protein transpeptidase domain CH59_1315 PF03717 Penicillin-binding Protein dimerisation domain CH59_1316 PF04999 Cell division protein FtsL CH59_1317 PF01795 MraW methylase family CH59_1318 PF02381 MraZ protein, putative antitoxin-like CH59_1319 PF06610 L-alanine exporter CH59_132 PF13185 GAF domain CH59_1320 PF00356 Bacterial regulatory proteins, lacI family CH59_1320 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH59_1321 PF01797 Transposase IS200 like CH59_1322 PF10369 Small subunit of acetolactate synthase CH59_1323 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH59_1323 PF00205 Thiamine pyrophosphate enzyme, central domain CH59_1323 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH59_1324 PF00501 AMP-binding enzyme CH59_1325 PF03466 LysR substrate binding domain CH59_1325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_1327 PF01797 Transposase IS200 like CH59_1328 PF08502 LeuA allosteric (dimerisation) domain CH59_1328 PF00682 HMGL-like CH59_1329 PF00180 Isocitrate/isopropylmalate dehydrogenase CH59_133 PF04403 Paraquat-inducible protein A CH59_1330 PF00330 Aconitase family (aconitate hydratase) CH59_1331 PF00694 Aconitase C-terminal domain CH59_1332 PF07690 Major Facilitator Superfamily CH59_1333 PF00665 Integrase core domain CH59_1333 PF02796 Helix-turn-helix domain of resolvase CH59_1334 PF01695 IstB-like ATP binding protein CH59_1335 PF07690 Major Facilitator Superfamily CH59_1336 PF12793 Sugar transport-related sRNA regulator N-term CH59_1336 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH59_1339 PF00528 Binding-protein-dependent transport system inner membrane component CH59_134 PF02470 MlaD protein CH59_1340 PF00005 ABC transporter CH59_1341 PF09335 SNARE associated Golgi protein CH59_1342 PF00136 DNA polymerase family B CH59_1342 PF03104 DNA polymerase family B, exonuclease domain CH59_1343 PF18339 RapA N-terminal Tudor like domain 1 CH59_1343 PF00176 SNF2 family N-terminal domain CH59_1343 PF12137 RNA polymerase recycling family C-terminal CH59_1343 PF00271 Helicase conserved C-terminal domain CH59_1343 PF18337 RapA N-terminal Tudor like domain CH59_1346 PF05736 OprF membrane domain CH59_1346 PF00691 OmpA family CH59_1354 PF04717 Type VI secretion system, phage-baseplate injector CH59_1355 PF10431 C-terminal, D2-small domain, of ClpB protein CH59_1355 PF00004 ATPase family associated with various cellular activities (AAA) CH59_1355 PF17871 AAA lid domain CH59_1355 PF07724 AAA domain (Cdc48 subfamily) CH59_1364 PF00849 RNA pseudouridylate synthase CH59_1365 PF05099 Tellurite resistance protein TerB CH59_1365 PF00226 DnaJ domain CH59_1366 PF04453 LPS transport system D CH59_1366 PF03968 OstA-like protein CH59_1367 PF09312 SurA N-terminal domain CH59_1367 PF00639 PPIC-type PPIASE domain CH59_1368 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CH59_1369 PF00398 Ribosomal RNA adenine dimethylase CH59_1370 PF04379 ApaG domain CH59_1371 PF00149 Calcineurin-like phosphoesterase CH59_1373 PF01797 Transposase IS200 like CH59_1374 PF00186 Dihydrofolate reductase CH59_1375 PF12821 Threonine/Serine exporter, ThrE CH59_1376 PF06738 Putative threonine/serine exporter CH59_1377 PF01810 LysE type translocator CH59_1378 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH59_1378 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH59_1378 PF02142 MGS-like domain CH59_1379 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CH59_1379 PF00117 Glutamine amidotransferase class-I CH59_138 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH59_138 PF02753 Pili assembly chaperone PapD, C-terminal domain CH59_1380 PF05173 Dihydrodipicolinate reductase, C-terminus CH59_1380 PF01113 Dihydrodipicolinate reductase, N-terminus CH59_1381 PF01797 Transposase IS200 like CH59_1382 PF02401 LytB protein CH59_1383 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH59_1384 PF01252 Signal peptidase (SPase) II CH59_1385 PF00133 tRNA synthetases class I (I, L, M and V) CH59_1385 PF08264 Anticodon-binding domain of tRNA CH59_1385 PF06827 Zinc finger found in FPG and IleRS CH59_1386 PF06574 FAD synthetase CH59_1386 PF01687 Riboflavin kinase CH59_1387 PF01649 Ribosomal protein S20 CH59_1388 PF03466 LysR substrate binding domain CH59_1388 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_1389 PF06965 Na+/H+ antiporter 1 CH59_1390 PF00684 DnaJ central domain CH59_1390 PF01556 DnaJ C terminal domain CH59_1390 PF00226 DnaJ domain CH59_1391 PF00012 Hsp70 protein CH59_1392 PF01184 GPR1/FUN34/yaaH family CH59_1394 PF07690 Major Facilitator Superfamily CH59_1395 PF00994 Probable molybdopterin binding domain CH59_1396 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH59_1397 PF03883 Peroxide stress protein YaaA CH59_1399 PF00291 Pyridoxal-phosphate dependent enzyme CH59_1399 PF14821 Threonine synthase N terminus CH59_14 PF04041 beta-1,4-mannooligosaccharide phosphorylase CH59_1400 PF08544 GHMP kinases C terminal CH59_1400 PF00288 GHMP kinases N terminal domain CH59_1401 PF00696 Amino acid kinase family CH59_1401 PF13840 ACT domain CH59_1401 PF01842 ACT domain CH59_1401 PF03447 Homoserine dehydrogenase, NAD binding domain CH59_1401 PF00742 Homoserine dehydrogenase CH59_1403 PF00072 Response regulator receiver domain CH59_1403 PF00486 Transcriptional regulatory protein, C terminal CH59_1404 PF05981 CreA protein CH59_1406 PF00300 Histidine phosphatase superfamily (branch 1) CH59_1407 PF06445 GyrI-like small molecule binding domain CH59_1407 PF12833 Helix-turn-helix domain CH59_1408 PF01371 Trp repressor protein CH59_1409 PF01931 Protein of unknown function DUF84 CH59_141 PF07351 Protein of unknown function (DUF1480) CH59_1410 PF14718 Soluble lytic murein transglycosylase L domain CH59_1410 PF01464 Transglycosylase SLT domain CH59_1411 PF00689 Cation transporting ATPase, C-terminus CH59_1411 PF00690 Cation transporter/ATPase, N-terminus CH59_1413 PF00990 Diguanylate cyclase, GGDEF domain CH59_1413 PF17152 Periplasmic sensor domain CH59_1414 PF00691 OmpA family CH59_1415 PF12848 ABC transporter CH59_1415 PF00005 ABC transporter CH59_1416 PF00005 ABC transporter CH59_1416 PF12848 ABC transporter CH59_1418 PF01381 Helix-turn-helix CH59_1418 PF13521 AAA domain CH59_1419 PF18073 Rubredoxin metal binding domain CH59_1420 PF18429 Domain of unknown function (DUF5609) CH59_1421 PF10144 Bacterial virulence factor haemolysin CH59_1422 PF01048 Phosphorylase superfamily CH59_1423 PF01676 Metalloenzyme superfamily CH59_1424 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CH59_1424 PF00591 Glycosyl transferase family, a/b domain CH59_1424 PF02885 Glycosyl transferase family, helical bundle domain CH59_1425 PF00591 Glycosyl transferase family, a/b domain CH59_1425 PF02885 Glycosyl transferase family, helical bundle domain CH59_1425 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CH59_1426 PF01791 DeoC/LacD family aldolase CH59_1427 PF07670 Nucleoside recognition CH59_1427 PF07662 Na+ dependent nucleoside transporter C-terminus CH59_1427 PF01773 Na+ dependent nucleoside transporter N-terminus CH59_1428 PF01026 TatD related DNase CH59_1429 PF01734 Patatin-like phospholipase CH59_143 PF00665 Integrase core domain CH59_143 PF02796 Helix-turn-helix domain of resolvase CH59_1430 PF07043 Protein of unknown function (DUF1328) CH59_1431 PF04972 BON domain CH59_1432 PF00009 Elongation factor Tu GTP binding domain CH59_1432 PF03144 Elongation factor Tu domain 2 CH59_1432 PF16658 Class II release factor RF3, C-terminal domain CH59_1433 PF00583 Acetyltransferase (GNAT) family CH59_1434 PF03603 DNA polymerase III psi subunit CH59_1435 PF08468 Methyltransferase small domain N-terminal CH59_1435 PF05175 Methyltransferase small domain CH59_1437 PF07256 Protein of unknown function (DUF1435) CH59_1438 PF00990 Diguanylate cyclase, GGDEF domain CH59_1439 PF01095 Pectinesterase CH59_1441 PF00873 AcrB/AcrD/AcrF family CH59_1442 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH59_1445 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH59_1446 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH59_1446 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH59_1447 PF04198 Putative sugar-binding domain CH59_1447 PF00325 Bacterial regulatory proteins, crp family CH59_1448 PF00325 Bacterial regulatory proteins, crp family CH59_1448 PF04198 Putative sugar-binding domain CH59_1449 PF00005 ABC transporter CH59_145 PF01695 IstB-like ATP binding protein CH59_1450 PF02653 Branched-chain amino acid transport system / permease component CH59_1451 PF02653 Branched-chain amino acid transport system / permease component CH59_1452 PF13407 Periplasmic binding protein domain CH59_1453 PF01791 DeoC/LacD family aldolase CH59_1454 PF03992 Antibiotic biosynthesis monooxygenase CH59_1455 PF10696 Protein of unknown function (DUF2501) CH59_1456 PF05524 PEP-utilising enzyme, N-terminal CH59_1456 PF02896 PEP-utilising enzyme, TIM barrel domain CH59_1456 PF00381 PTS HPr component phosphorylation site CH59_1456 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH59_1456 PF00391 PEP-utilising enzyme, mobile domain CH59_1458 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH59_1459 PF12833 Helix-turn-helix domain CH59_1460 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH59_1462 PF05987 Bacterial protein of unknown function (DUF898) CH59_1466 PF00665 Integrase core domain CH59_1471 PF01555 DNA methylase CH59_1472 PF01527 Transposase CH59_1474 PF07728 AAA domain (dynein-related subfamily) CH59_1474 PF12102 Domain of unknown function (DUF3578) CH59_1475 PF00665 Integrase core domain CH59_1475 PF02796 Helix-turn-helix domain of resolvase CH59_1476 PF01695 IstB-like ATP binding protein CH59_1478 PF07338 Protein of unknown function (DUF1471) CH59_1479 PF02770 Acyl-CoA dehydrogenase, middle domain CH59_1479 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH59_1479 PF18158 Adaptive response protein AidB N-terminal domain CH59_1480 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH59_1480 PF00588 SpoU rRNA Methylase family CH59_1481 PF08206 Ribonuclease B OB domain CH59_1481 PF00773 RNB domain CH59_1481 PF08461 Ribonuclease R winged-helix domain CH59_1481 PF17876 Cold shock domain CH59_1481 PF00575 S1 RNA binding domain CH59_1482 PF02082 Transcriptional regulator CH59_1483 PF00709 Adenylosuccinate synthetase CH59_1484 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CH59_1485 PF01145 SPFH domain / Band 7 family CH59_1486 PF12221 Bacterial membrane protein N terminal CH59_1486 PF01145 SPFH domain / Band 7 family CH59_1487 PF13167 GTP-binding GTPase N-terminal CH59_1487 PF01926 50S ribosome-binding GTPase CH59_1487 PF16360 GTP-binding GTPase Middle Region CH59_1488 PF17209 Hfq protein CH59_1490 PF08676 MutL C terminal dimerisation domain CH59_1490 PF01119 DNA mismatch repair protein, C-terminal domain CH59_1491 PF01520 N-acetylmuramoyl-L-alanine amidase CH59_1492 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CH59_1493 PF01256 Carbohydrate kinase CH59_1493 PF03853 YjeF-related protein N-terminus CH59_1494 PF08331 Domain of unknown function (DUF1730) CH59_1497 PF00929 Exonuclease CH59_1498 PF03193 RsgA GTPase CH59_1499 PF02666 Phosphatidylserine decarboxylase CH59_15 PF00528 Binding-protein-dependent transport system inner membrane component CH59_1500 PF00924 Mechanosensitive ion channel CH59_1500 PF12795 Mechanosensitive ion channel porin domain CH59_1500 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH59_1501 PF00152 tRNA synthetases class II (D, K and N) CH59_1502 PF00890 FAD binding domain CH59_1502 PF02910 Fumarate reductase flavoprotein C-term CH59_1503 PF13183 4Fe-4S dicluster domain CH59_1503 PF13085 2Fe-2S iron-sulfur cluster binding domain CH59_1504 PF02300 Fumarate reductase subunit C CH59_1505 PF02313 Fumarate reductase subunit D CH59_1506 PF01797 Transposase IS200 like CH59_1507 PF00893 Small Multidrug Resistance protein CH59_1508 PF01132 Elongation factor P (EF-P) OB domain CH59_1508 PF09285 Elongation factor P, C-terminal CH59_1508 PF08207 Elongation factor P (EF-P) KOW-like domain CH59_1509 PF04055 Radical SAM superfamily CH59_151 PF00842 Alanine racemase, C-terminal domain CH59_151 PF01168 Alanine racemase, N-terminal domain CH59_1510 PF13698 Domain of unknown function (DUF4156) CH59_1511 PF01695 IstB-like ATP binding protein CH59_1513 PF02796 Helix-turn-helix domain of resolvase CH59_1513 PF00665 Integrase core domain CH59_1514 PF00118 TCP-1/cpn60 chaperonin family CH59_1515 PF00166 Chaperonin 10 Kd subunit CH59_1516 PF04186 FxsA cytoplasmic membrane protein CH59_1517 PF00206 Lyase CH59_1517 PF10415 Fumarase C C-terminus CH59_1518 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH59_1519 PF03091 CutA1 divalent ion tolerance protein CH59_1520 PF11412 Disulphide bond corrector protein DsbC CH59_1520 PF02683 Cytochrome C biogenesis protein transmembrane region CH59_1521 PF00384 Molybdopterin oxidoreductase CH59_1521 PF01568 Molydopterin dinucleotide binding domain CH59_1521 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH59_1522 PF12800 4Fe-4S binding domain CH59_1522 PF13247 4Fe-4S dicluster domain CH59_1523 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH59_1523 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH59_1523 PF13247 4Fe-4S dicluster domain CH59_1530 PF06379 L-rhamnose-proton symport protein (RhaT) CH59_1531 PF02311 AraC-like ligand binding domain CH59_1531 PF12833 Helix-turn-helix domain CH59_1532 PF02311 AraC-like ligand binding domain CH59_1532 PF12833 Helix-turn-helix domain CH59_1535 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH59_1535 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH59_1536 PF06134 L-rhamnose isomerase (RhaA) CH59_1537 PF00596 Class II Aldolase and Adducin N-terminal domain CH59_1538 PF00465 Iron-containing alcohol dehydrogenase CH59_1539 PF05336 L-rhamnose mutarotase CH59_154 PF13018 Extended Signal Peptide of Type V secretion system CH59_154 PF03895 YadA-like membrane anchor domain CH59_154 PF05658 Head domain of trimeric autotransporter adhesin CH59_154 PF05662 Coiled stalk of trimeric autotransporter adhesin CH59_1540 PF00436 Single-strand binding protein family CH59_1541 PF17760 UvrA interaction domain CH59_1541 PF00005 ABC transporter CH59_1541 PF17755 UvrA DNA-binding domain CH59_1542 PF04237 YjbR CH59_1543 PF00155 Aminotransferase class I and II CH59_1544 PF00842 Alanine racemase, C-terminal domain CH59_1544 PF01168 Alanine racemase, N-terminal domain CH59_1545 PF03796 DnaB-like helicase C terminal domain CH59_1545 PF00772 DnaB-like helicase N terminal domain CH59_1546 PF08240 Alcohol dehydrogenase GroES-like domain CH59_1546 PF00107 Zinc-binding dehydrogenase CH59_1547 PF09583 Phage shock protein G (Phageshock_PspG) CH59_1548 PF01207 Dihydrouridine synthase (Dus) CH59_1549 PF01475 Ferric uptake regulator family CH59_155 PF03895 YadA-like membrane anchor domain CH59_155 PF13018 Extended Signal Peptide of Type V secretion system CH59_155 PF05658 Head domain of trimeric autotransporter adhesin CH59_155 PF05662 Coiled stalk of trimeric autotransporter adhesin CH59_1550 PF01726 LexA DNA binding domain CH59_1550 PF00717 Peptidase S24-like CH59_1551 PF01219 Prokaryotic diacylglycerol kinase CH59_1552 PF01553 Acyltransferase CH59_1553 PF01040 UbiA prenyltransferase family CH59_1554 PF04345 Chorismate lyase CH59_1555 PF12951 Passenger-associated-transport-repeat CH59_1556 PF01565 FAD binding domain CH59_1556 PF08031 Berberine and berberine like CH59_1559 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH59_156 PF01510 N-acetylmuramoyl-L-alanine amidase CH59_1560 PF13954 PapC N-terminal domain CH59_1560 PF00577 Outer membrane usher protein CH59_1560 PF13953 PapC C-terminal domain CH59_1562 PF02342 TerD domain CH59_1563 PF02342 TerD domain CH59_1564 PF03741 Integral membrane protein TerC family CH59_1565 PF05099 Tellurite resistance protein TerB CH59_1566 PF02342 TerD domain CH59_1567 PF02342 TerD domain CH59_157 PF04344 Chemotaxis phosphatase, CheZ CH59_1571 PF15608 PELOTA RNA binding domain CH59_1571 PF11202 Phosphoribosyl transferase (PRTase) CH59_1575 PF04055 Radical SAM superfamily CH59_1576 PF06228 Haem utilisation ChuX/HutX CH59_1577 PF13460 NAD(P)H-binding CH59_1578 PF07715 TonB-dependent Receptor Plug Domain CH59_1578 PF00593 TonB dependent receptor CH59_1579 PF05171 Haemin-degrading HemS.ChuX domain CH59_158 PF00072 Response regulator receiver domain CH59_1580 PF01497 Periplasmic binding protein CH59_1581 PF01032 FecCD transport family CH59_1582 PF00005 ABC transporter CH59_1583 PF01053 Cys/Met metabolism PLP-dependent enzyme CH59_1584 PF03222 Tryptophan/tyrosine permease family CH59_1585 PF03466 LysR substrate binding domain CH59_1585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_1586 PF01206 Sulfurtransferase TusA CH59_1587 PF04143 Sulphur transport CH59_1588 PF01312 FlhB HrpN YscU SpaS Family CH59_1589 PF01311 Bacterial export proteins, family 1 CH59_159 PF01339 CheB methylesterase CH59_159 PF00072 Response regulator receiver domain CH59_1590 PF01313 Bacterial export proteins, family 3 CH59_1591 PF00813 FliP family CH59_1592 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH59_1595 PF18269 T3SS EscN ATPase C-terminal domain CH59_1595 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH59_1596 PF00771 FHIPEP family CH59_1599 PF01514 Secretory protein of YscJ/FliF family CH59_16 PF00528 Binding-protein-dependent transport system inner membrane component CH59_160 PF03705 CheR methyltransferase, all-alpha domain CH59_160 PF01739 CheR methyltransferase, SAM binding domain CH59_1603 PF12833 Helix-turn-helix domain CH59_1603 PF14525 AraC-binding-like domain CH59_1607 PF01627 Hpt domain CH59_1607 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH59_1607 PF00072 Response regulator receiver domain CH59_1607 PF00512 His Kinase A (phospho-acceptor) domain CH59_1607 PF00672 HAMP domain CH59_1607 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_1608 PF00072 Response regulator receiver domain CH59_1608 PF00196 Bacterial regulatory proteins, luxR family CH59_1609 PF00375 Sodium:dicarboxylate symporter family CH59_1610 PF16177 Acetyl-coenzyme A synthetase N-terminus CH59_1610 PF00501 AMP-binding enzyme CH59_1610 PF13193 AMP-binding enzyme C-terminal domain CH59_1611 PF04341 Protein of unknown function, DUF485 CH59_1612 PF00474 Sodium:solute symporter family CH59_1614 PF00665 Integrase core domain CH59_1614 PF02796 Helix-turn-helix domain of resolvase CH59_1615 PF01695 IstB-like ATP binding protein CH59_1620 PF05638 Type VI secretion system effector, Hcp CH59_1622 PF07148 Maltose operon periplasmic protein precursor (MalM) CH59_1623 PF02264 LamB porin CH59_1624 PF00005 ABC transporter CH59_1624 PF17912 MalK OB fold domain CH59_1626 PF01547 Bacterial extracellular solute-binding protein CH59_1627 PF14785 Maltose transport system permease protein MalF P2 domain CH59_1627 PF00528 Binding-protein-dependent transport system inner membrane component CH59_1628 PF00528 Binding-protein-dependent transport system inner membrane component CH59_1629 PF06146 Phosphate-starvation-inducible E CH59_163 PF02203 Tar ligand binding domain homologue CH59_163 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH59_163 PF00672 HAMP domain CH59_1630 PF00342 Phosphoglucose isomerase CH59_1631 PF01842 ACT domain CH59_1631 PF00696 Amino acid kinase family CH59_1632 PF08479 POTRA domain, ShlB-type CH59_1632 PF17287 POTRA domain CH59_1632 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH59_1633 PF05860 haemagglutination activity domain CH59_1633 PF13332 Hemagglutinin repeat CH59_1634 PF02574 Homocysteine S-methyltransferase CH59_1634 PF02310 B12 binding domain CH59_1634 PF00809 Pterin binding enzyme CH59_1634 PF02965 Vitamin B12 dependent methionine synthase, activation domain CH59_1634 PF02607 B12 binding domain CH59_1635 PF09339 IclR helix-turn-helix domain CH59_1635 PF01614 Bacterial transcriptional regulator CH59_1636 PF09339 IclR helix-turn-helix domain CH59_1636 PF01614 Bacterial transcriptional regulator CH59_1637 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CH59_1638 PF00463 Isocitrate lyase family CH59_1639 PF01274 Malate synthase CH59_1640 PF04204 Homoserine O-succinyltransferase CH59_1652 PF01808 AICARFT/IMPCHase bienzyme CH59_1652 PF02142 MGS-like domain CH59_1653 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CH59_1653 PF02843 Phosphoribosylglycinamide synthetase, C domain CH59_1653 PF02844 Phosphoribosylglycinamide synthetase, N domain CH59_1654 PF07356 Protein of unknown function (DUF1481) CH59_1655 PF00216 Bacterial DNA-binding protein CH59_1656 PF04222 Protein of unknown function (DUF416) CH59_1657 PF04493 Endonuclease V CH59_1658 PF01208 Uroporphyrinogen decarboxylase (URO-D) CH59_166 PF12951 Passenger-associated-transport-repeat CH59_1660 PF09297 NADH pyrophosphatase zinc ribbon domain CH59_1660 PF00293 NUDIX domain CH59_1661 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CH59_1662 PF01964 Radical SAM ThiC family CH59_1662 PF13667 ThiC-associated domain CH59_1663 PF02581 Thiamine monophosphate synthase CH59_1664 PF00899 ThiF family CH59_1666 PF05690 Thiazole biosynthesis protein ThiG CH59_1667 PF04055 Radical SAM superfamily CH59_1667 PF06968 Biotin and Thiamin Synthesis associated domain CH59_1668 PF01797 Transposase IS200 like CH59_1669 PF05000 RNA polymerase Rpb1, domain 4 CH59_1669 PF00623 RNA polymerase Rpb1, domain 2 CH59_1669 PF04997 RNA polymerase Rpb1, domain 1 CH59_1669 PF04983 RNA polymerase Rpb1, domain 3 CH59_1669 PF04998 RNA polymerase Rpb1, domain 5 CH59_167 PF08348 YheO-like PAS domain CH59_167 PF13309 HTH domain CH59_1670 PF04563 RNA polymerase beta subunit CH59_1670 PF04560 RNA polymerase Rpb2, domain 7 CH59_1670 PF00562 RNA polymerase Rpb2, domain 6 CH59_1670 PF04561 RNA polymerase Rpb2, domain 2 CH59_1670 PF04565 RNA polymerase Rpb2, domain 3 CH59_1670 PF10385 RNA polymerase beta subunit external 1 domain CH59_1672 PF16320 Ribosomal protein L7/L12 dimerisation domain CH59_1672 PF00542 Ribosomal protein L7/L12 C-terminal domain CH59_1673 PF00466 Ribosomal protein L10 CH59_1674 PF00687 Ribosomal protein L1p/L10e family CH59_1675 PF03946 Ribosomal protein L11, N-terminal domain CH59_1675 PF00298 Ribosomal protein L11, RNA binding domain CH59_1676 PF00467 KOW motif CH59_1676 PF02357 Transcription termination factor nusG CH59_1677 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CH59_1678 PF03143 Elongation factor Tu C-terminal domain CH59_1678 PF00009 Elongation factor Tu GTP binding domain CH59_1678 PF03144 Elongation factor Tu domain 2 CH59_1683 PF01695 IstB-like ATP binding protein CH59_1684 PF00665 Integrase core domain CH59_1684 PF02796 Helix-turn-helix domain of resolvase CH59_1685 PF13673 Acetyltransferase (GNAT) domain CH59_1686 PF00485 Phosphoribulokinase / Uridine kinase family CH59_1687 PF03099 Biotin/lipoate A/B protein ligase family CH59_1687 PF08279 HTH domain CH59_1687 PF02237 Biotin protein ligase C terminal domain CH59_1688 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CH59_1688 PF01565 FAD binding domain CH59_169 PF01042 Endoribonuclease L-PSP CH59_1694 PF12724 Flavodoxin domain CH59_1695 PF02386 Cation transport protein CH59_1696 PF01205 Uncharacterized protein family UPF0029 CH59_1696 PF09186 Domain of unknown function (DUF1949) CH59_1697 PF01797 Transposase IS200 like CH59_1698 PF01205 Uncharacterized protein family UPF0029 CH59_1698 PF09186 Domain of unknown function (DUF1949) CH59_1699 PF00557 Metallopeptidase family M24 CH59_170 PF07690 Major Facilitator Superfamily CH59_1700 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH59_1700 PF00378 Enoyl-CoA hydratase/isomerase CH59_1700 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH59_1701 PF02803 Thiolase, C-terminal domain CH59_1701 PF00108 Thiolase, N-terminal domain CH59_1702 PF00175 Oxidoreductase NAD-binding domain CH59_1702 PF00970 Oxidoreductase FAD-binding domain CH59_1703 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CH59_1704 PF02357 Transcription termination factor nusG CH59_1705 PF00490 Delta-aminolevulinic acid dehydratase CH59_1706 PF01026 TatD related DNase CH59_1707 PF01695 IstB-like ATP binding protein CH59_1709 PF02796 Helix-turn-helix domain of resolvase CH59_1709 PF00665 Integrase core domain CH59_171 PF01584 CheW-like domain CH59_1710 PF01026 TatD related DNase CH59_1711 PF00902 Sec-independent protein translocase protein (TatC) CH59_1713 PF02416 mttA/Hcf106 family CH59_1714 PF03109 ABC1 family CH59_1715 PF02036 SCP-2 sterol transfer family CH59_1716 PF01209 ubiE/COQ5 methyltransferase family CH59_1717 PF02646 RmuC family CH59_1718 PF09335 SNARE associated Golgi protein CH59_1719 PF02554 Carbon starvation protein CstA CH59_1719 PF13722 5TM C-terminal transporter carbon starvation CstA CH59_172 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_172 PF01627 Hpt domain CH59_172 PF01584 CheW-like domain CH59_172 PF02895 Signal transducing histidine kinase, homodimeric domain CH59_172 PF09078 CheY binding CH59_1721 PF01048 Phosphorylase superfamily CH59_1722 PF01738 Dienelactone hydrolase family CH59_1723 PF01717 Cobalamin-independent synthase, Catalytic domain CH59_1723 PF08267 Cobalamin-independent synthase, N-terminal domain CH59_1724 PF00892 EamA-like transporter family CH59_1725 PF03466 LysR substrate binding domain CH59_1725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_1726 PF03547 Membrane transport protein CH59_1727 PF03009 Glycerophosphoryl diester phosphodiesterase family CH59_1728 PF00005 ABC transporter CH59_1728 PF17912 MalK OB fold domain CH59_1729 PF00528 Binding-protein-dependent transport system inner membrane component CH59_173 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH59_173 PF00691 OmpA family CH59_1730 PF00528 Binding-protein-dependent transport system inner membrane component CH59_1731 PF13416 Bacterial extracellular solute-binding protein CH59_1739 PF00005 ABC transporter CH59_174 PF01618 MotA/TolQ/ExbB proton channel family CH59_1740 PF00005 ABC transporter CH59_1740 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH59_1741 PF11862 Domain of unknown function (DUF3382) CH59_1741 PF02653 Branched-chain amino acid transport system / permease component CH59_1742 PF02653 Branched-chain amino acid transport system / permease component CH59_1743 PF13458 Periplasmic binding protein CH59_1744 PF12568 Acetyltransferase (GNAT) domain, PanZ CH59_1745 PF01797 Transposase IS200 like CH59_1746 PF00140 Sigma-70 factor, region 1.2 CH59_1746 PF04545 Sigma-70, region 4 CH59_1746 PF04542 Sigma-70 region 2 CH59_1747 PF18075 FtsX extracellular domain CH59_1747 PF02687 FtsX-like permease family CH59_1748 PF00005 ABC transporter CH59_1749 PF00448 SRP54-type protein, GTPase domain CH59_1749 PF02881 SRP54-type protein, helical bundle domain CH59_1749 PF00448 SRP54-type protein, GTPase domain CH59_1749 PF02881 SRP54-type protein, helical bundle domain CH59_175 PF05280 Flagellar transcriptional activator (FlhC) CH59_1751 PF06611 Protein of unknown function (DUF1145) CH59_1754 PF07947 YhhN family CH59_1755 PF00403 Heavy-metal-associated domain CH59_1756 PF01206 Sulfurtransferase TusA CH59_1757 PF02592 Putative vitamin uptake transporter CH59_1758 PF08786 DcrB CH59_1759 PF02754 Cysteine-rich domain CH59_1759 PF13183 4Fe-4S dicluster domain CH59_176 PF05247 Flagellar transcriptional activator (FlhD) CH59_1760 PF00890 FAD binding domain CH59_1761 PF01266 FAD dependent oxidoreductase CH59_1761 PF04324 BFD-like [2Fe-2S] binding domain CH59_1762 PF03009 Glycerophosphoryl diester phosphodiesterase family CH59_1765 PF12146 Serine aminopeptidase, S33 CH59_1766 PF01810 LysE type translocator CH59_1767 PF01810 LysE type translocator CH59_1768 PF09382 RQC domain CH59_1768 PF00270 DEAD/DEAH box helicase CH59_1768 PF16124 RecQ zinc-binding CH59_1768 PF00271 Helicase conserved C-terminal domain CH59_1768 PF00570 HRDC domain CH59_1769 PF02253 Phospholipase A1 CH59_177 PF00690 Cation transporter/ATPase, N-terminus CH59_177 PF00689 Cation transporting ATPase, C-terminus CH59_1770 PF03061 Thioesterase superfamily CH59_1771 PF00892 EamA-like transporter family CH59_1772 PF01544 CorA-like Mg2+ transporter protein CH59_1773 PF09370 Phosphoenolpyruvate hydrolase-like CH59_1776 PF13361 UvrD-like helicase C-terminal domain CH59_1776 PF00580 UvrD/REP helicase N-terminal domain CH59_1777 PF13419 Haloacid dehalogenase-like hydrolase CH59_1778 PF00589 Phage integrase family CH59_1778 PF02899 Phage integrase, N-terminal SAM-like domain CH59_1779 PF04340 Protein of unknown function, DUF484 CH59_178 PF02308 MgtC family CH59_1780 PF01678 Diaminopimelate epimerase CH59_1781 PF13627 Prokaryotic lipoprotein-attachment site CH59_1782 PF01491 Frataxin-like domain CH59_1783 PF12633 Adenylate cyclase NT domain CH59_1783 PF01295 Adenylate cyclase, class-I CH59_1784 PF03900 Porphobilinogen deaminase, C-terminal domain CH59_1784 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CH59_1785 PF02602 Uroporphyrinogen-III synthase HemD CH59_1786 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CH59_1787 PF07719 Tetratricopeptide repeat CH59_1787 PF07219 HemY protein N-terminus CH59_1788 PF01797 Transposase IS200 like CH59_1789 PF01695 IstB-like ATP binding protein CH59_179 PF02203 Tar ligand binding domain homologue CH59_179 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH59_179 PF00672 HAMP domain CH59_1791 PF00665 Integrase core domain CH59_1791 PF02796 Helix-turn-helix domain of resolvase CH59_1797 PF00324 Amino acid permease CH59_1798 PF03808 Glycosyl transferase WecB/TagA/CpsF family CH59_1799 PF06899 WzyE protein, O-antigen assembly polymerase CH59_18 PF00356 Bacterial regulatory proteins, lacI family CH59_180 PF02203 Tar ligand binding domain homologue CH59_180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH59_180 PF00672 HAMP domain CH59_1800 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 CH59_1801 PF01943 Polysaccharide biosynthesis protein CH59_1802 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH59_1804 PF00483 Nucleotidyl transferase CH59_1805 PF16363 GDP-mannose 4,6 dehydratase CH59_1806 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH59_1806 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH59_1806 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH59_1807 PF02350 UDP-N-acetylglucosamine 2-epimerase CH59_1808 PF02706 Chain length determinant protein CH59_1809 PF00953 Glycosyl transferase family 4 CH59_181 PF10781 Dextransucrase DSRB CH59_1810 PF07497 Rho termination factor, RNA-binding domain CH59_1810 PF07498 Rho termination factor, N-terminal domain CH59_1810 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH59_1811 PF00085 Thioredoxin CH59_1812 PF00270 DEAD/DEAH box helicase CH59_1812 PF00271 Helicase conserved C-terminal domain CH59_1815 PF00580 UvrD/REP helicase N-terminal domain CH59_1815 PF13361 UvrD-like helicase C-terminal domain CH59_1818 PF00872 Transposase, Mutator family CH59_1819 PF00872 Transposase, Mutator family CH59_182 PF00313 'Cold-shock' DNA-binding domain CH59_1821 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH59_1821 PF02753 Pili assembly chaperone PapD, C-terminal domain CH59_1822 PF00577 Outer membrane usher protein CH59_1822 PF13954 PapC N-terminal domain CH59_1822 PF13953 PapC C-terminal domain CH59_1824 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH59_1824 PF02753 Pili assembly chaperone PapD, C-terminal domain CH59_1825 PF01320 Colicin immunity protein / pyocin immunity protein CH59_183 PF02837 Glycosyl hydrolases family 2, sugar binding domain CH59_183 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CH59_183 PF02929 Beta galactosidase small chain CH59_183 PF16353 Domain of unknown function(DUF4981) CH59_183 PF00703 Glycosyl hydrolases family 2 CH59_1830 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CH59_1830 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CH59_1831 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_1831 PF03466 LysR substrate binding domain CH59_1838 PF00291 Pyridoxal-phosphate dependent enzyme CH59_1838 PF00585 C-terminal regulatory domain of Threonine dehydratase CH59_1839 PF00920 Dehydratase family CH59_184 PF00109 Beta-ketoacyl synthase, N-terminal domain CH59_184 PF16197 Ketoacyl-synthetase C-terminal extension CH59_184 PF02801 Beta-ketoacyl synthase, C-terminal domain CH59_184 PF00698 Acyl transferase domain CH59_184 PF08240 Alcohol dehydrogenase GroES-like domain CH59_184 PF00107 Zinc-binding dehydrogenase CH59_184 PF00550 Phosphopantetheine attachment site CH59_184 PF08659 KR domain CH59_184 PF14765 Polyketide synthase dehydratase CH59_1840 PF01063 Amino-transferase class IV CH59_1842 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH59_1842 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH59_1842 PF00205 Thiamine pyrophosphate enzyme, central domain CH59_1843 PF13335 Magnesium chelatase, subunit ChlI C-terminal CH59_1843 PF01078 Magnesium chelatase, subunit ChlI CH59_1844 PF04219 Protein of unknown function, DUF CH59_1845 PF02653 Branched-chain amino acid transport system / permease component CH59_1846 PF03466 LysR substrate binding domain CH59_1846 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_1847 PF02653 Branched-chain amino acid transport system / permease component CH59_1848 PF00005 ABC transporter CH59_1849 PF13407 Periplasmic binding protein domain CH59_185 PF10777 Inner membrane protein YlaC CH59_1856 PF01177 Asp/Glu/Hydantoin racemase CH59_1857 PF07715 TonB-dependent Receptor Plug Domain CH59_1857 PF00593 TonB dependent receptor CH59_1858 PF05958 tRNA (Uracil-5-)-methyltransferase CH59_1859 PF07226 Protein of unknown function (DUF1422) CH59_186 PF13404 AsnC-type helix-turn-helix domain CH59_186 PF01037 Lrp/AsnC ligand binding domain CH59_1860 PF00440 Bacterial regulatory proteins, tetR family CH59_1861 PF03466 LysR substrate binding domain CH59_1861 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_1862 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH59_1862 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH59_1863 PF00462 Glutaredoxin CH59_1863 PF08534 Redoxin CH59_1864 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH59_1864 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH59_1865 PF03544 Gram-negative bacterial TonB protein C-terminal CH59_1866 PF00529 HlyD membrane-fusion protein of T1SS CH59_1867 PF00664 ABC transporter transmembrane region CH59_1867 PF00005 ABC transporter CH59_1869 PF00593 TonB dependent receptor CH59_1869 PF07715 TonB-dependent Receptor Plug Domain CH59_1871 PF14698 Argininosuccinate lyase C-terminal CH59_1871 PF00206 Lyase CH59_1872 PF00696 Amino acid kinase family CH59_1873 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH59_1873 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH59_1874 PF07687 Peptidase dimerisation domain CH59_1874 PF01546 Peptidase family M20/M25/M40 CH59_1875 PF00311 Phosphoenolpyruvate carboxylase CH59_1877 PF01695 IstB-like ATP binding protein CH59_1879 PF02796 Helix-turn-helix domain of resolvase CH59_1879 PF00665 Integrase core domain CH59_188 PF14001 YdfZ protein CH59_1881 PF13276 HTH-like domain CH59_1881 PF00665 Integrase core domain CH59_1881 PF13333 Integrase core domain CH59_1884 PF01266 FAD dependent oxidoreductase CH59_1884 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CH59_1885 PF00343 Carbohydrate phosphorylase CH59_1886 PF00534 Glycosyl transferases group 1 CH59_1886 PF08323 Starch synthase catalytic domain CH59_1887 PF00483 Nucleotidyl transferase CH59_1888 PF18390 Glycogen debranching enzyme C-terminal domain CH59_1888 PF00128 Alpha amylase, catalytic domain CH59_1888 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH59_1889 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH59_1889 PF00128 Alpha amylase, catalytic domain CH59_1889 PF02806 Alpha amylase, C-terminal all-beta domain CH59_189 PF00328 Histidine phosphatase superfamily (branch 2) CH59_1890 PF06580 Histidine kinase CH59_1890 PF07694 5TMR of 5TMR-LYT CH59_1891 PF11924 Inverse autotransporter, beta-domain CH59_1891 PF07979 Intimin C-type lectin domain CH59_1891 PF09134 Invasin, domain 3 CH59_1891 PF02369 Bacterial Ig-like domain (group 1) CH59_1896 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH59_1896 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH59_1897 PF01914 MarC family integral membrane protein CH59_19 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH59_19 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH59_19 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH59_19 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH59_1901 PF01202 Shikimate kinase CH59_1902 PF02447 GntP family permease CH59_1903 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH59_1903 PF00356 Bacterial regulatory proteins, lacI family CH59_1904 PF17954 Quercetinase C-terminal cupin domain CH59_1904 PF02678 Pirin CH59_1906 PF00486 Transcriptional regulatory protein, C terminal CH59_1906 PF00072 Response regulator receiver domain CH59_1908 PF01116 Fructose-bisphosphate aldolase class-II CH59_191 PF01638 HxlR-like helix-turn-helix CH59_1910 PF13407 Periplasmic binding protein domain CH59_1911 PF02653 Branched-chain amino acid transport system / permease component CH59_1912 PF00005 ABC transporter CH59_1913 PF13188 PAS domain CH59_1913 PF00072 Response regulator receiver domain CH59_1913 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_1913 PF08448 PAS fold CH59_1913 PF00512 His Kinase A (phospho-acceptor) domain CH59_1915 PF01384 Phosphate transporter family CH59_1916 PF01797 Transposase IS200 like CH59_1917 PF01797 Transposase IS200 like CH59_1918 PF10625 Universal stress protein B (UspB) CH59_1919 PF00582 Universal stress protein family CH59_192 PF05368 NmrA-like family CH59_1920 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH59_1920 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CH59_1921 PF00413 Matrixin CH59_1921 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CH59_1921 PF08548 Peptidase M10 serralysin C terminal CH59_1922 PF04445 Putative SAM-dependent methyltransferase CH59_1923 PF01432 Peptidase family M3 CH59_1924 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CH59_1925 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH59_1925 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH59_1926 PF13556 PucR C-terminal helix-turn-helix domain CH59_1926 PF17853 GGDEF-like domain CH59_1926 PF05651 Putative sugar diacid recognition CH59_1927 PF02447 GntP family permease CH59_1928 PF02595 Glycerate kinase family CH59_193 PF08447 PAS fold CH59_193 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH59_1933 PF03631 Virulence factor BrkB CH59_1934 PF05170 AsmA family CH59_1935 PF02611 CDP-diacylglycerol pyrophosphatase CH59_1936 PF00563 EAL domain CH59_1937 PF01361 Tautomerase enzyme CH59_1938 PF00294 pfkB family carbohydrate kinase CH59_1939 PF00675 Insulinase (Peptidase family M16) CH59_1939 PF05193 Peptidase M16 inactive domain CH59_1941 PF00375 Sodium:dicarboxylate symporter family CH59_1943 PF06917 Periplasmic pectate lyase CH59_1944 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH59_1945 PF00672 HAMP domain CH59_1945 PF00563 EAL domain CH59_1945 PF00990 Diguanylate cyclase, GGDEF domain CH59_1945 PF17154 Gammaproteobacterial periplasmic sensor domain CH59_1946 PF01270 Glycosyl hydrolases family 8 CH59_1947 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH59_1947 PF00005 ABC transporter CH59_1948 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH59_1948 PF00005 ABC transporter CH59_1949 PF12911 N-terminal TM domain of oligopeptide transport permease C CH59_1949 PF00528 Binding-protein-dependent transport system inner membrane component CH59_195 PF00356 Bacterial regulatory proteins, lacI family CH59_195 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH59_1950 PF00528 Binding-protein-dependent transport system inner membrane component CH59_1951 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH59_1953 PF17287 POTRA domain CH59_1953 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH59_1953 PF08479 POTRA domain, ShlB-type CH59_1954 PF05594 Haemagluttinin repeat CH59_1954 PF13332 Hemagglutinin repeat CH59_1954 PF05860 haemagglutination activity domain CH59_1954 PF04829 Pre-toxin domain with VENN motif CH59_1957 PF07690 Major Facilitator Superfamily CH59_1958 PF07730 Histidine kinase CH59_1958 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_1958 PF05231 MASE1 CH59_1959 PF01695 IstB-like ATP binding protein CH59_196 PF00180 Isocitrate/isopropylmalate dehydrogenase CH59_1960 PF01695 IstB-like ATP binding protein CH59_1961 PF02796 Helix-turn-helix domain of resolvase CH59_1961 PF00665 Integrase core domain CH59_1963 PF05231 MASE1 CH59_1963 PF07730 Histidine kinase CH59_1963 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_1964 PF00072 Response regulator receiver domain CH59_1964 PF00196 Bacterial regulatory proteins, luxR family CH59_1965 PF08019 Phosphoethanolamine transferase EptA/EptB CH59_1965 PF00884 Sulfatase CH59_1966 PF12146 Serine aminopeptidase, S33 CH59_1967 PF00324 Amino acid permease CH59_1968 PF00221 Aromatic amino acid lyase CH59_1969 PF17392 Urocanase C-terminal domain CH59_1969 PF17391 Urocanase N-terminal domain CH59_1969 PF01175 Urocanase Rossmann-like domain CH59_197 PF00849 RNA pseudouridylate synthase CH59_1970 PF00291 Pyridoxal-phosphate dependent enzyme CH59_1971 PF00156 Phosphoribosyl transferase domain CH59_1974 PF01497 Periplasmic binding protein CH59_1975 PF01032 FecCD transport family CH59_1976 PF01032 FecCD transport family CH59_1978 PF00005 ABC transporter CH59_198 PF00293 NUDIX domain CH59_1981 PF13737 Transposase DDE domain CH59_1982 PF13737 Transposase DDE domain CH59_1983 PF04606 Ogr/Delta-like zinc finger CH59_1985 PF13356 Arm DNA-binding domain CH59_1985 PF14659 Phage integrase, N-terminal SAM-like domain CH59_1985 PF00589 Phage integrase family CH59_1987 PF12833 Helix-turn-helix domain CH59_1988 PF02653 Branched-chain amino acid transport system / permease component CH59_1989 PF00005 ABC transporter CH59_1990 PF13407 Periplasmic binding protein domain CH59_1992 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH59_1992 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH59_1994 PF02753 Pili assembly chaperone PapD, C-terminal domain CH59_1994 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH59_1995 PF13953 PapC C-terminal domain CH59_1995 PF13954 PapC N-terminal domain CH59_1995 PF00577 Outer membrane usher protein CH59_1996 PF13953 PapC C-terminal domain CH59_1996 PF13954 PapC N-terminal domain CH59_1996 PF00577 Outer membrane usher protein CH59_1997 PF00419 Fimbrial protein CH59_1998 PF01757 Acyltransferase family CH59_20 PF17912 MalK OB fold domain CH59_20 PF00005 ABC transporter CH59_200 PF04356 Protein of unknown function (DUF489) CH59_2000 PF13276 HTH-like domain CH59_2000 PF00665 Integrase core domain CH59_2000 PF13333 Integrase core domain CH59_2001 PF07690 Major Facilitator Superfamily CH59_2006 PF01526 Tn3 transposase DDE domain CH59_2006 PF13700 Domain of unknown function (DUF4158) CH59_2009 PF12390 Selenocysteine synthase N terminal CH59_2009 PF03841 L-seryl-tRNA selenium transferase CH59_201 PF00206 Lyase CH59_201 PF08328 Adenylosuccinate lyase C-terminal CH59_2010 PF04216 Protein involved in formate dehydrogenase formation CH59_2011 PF01292 Prokaryotic cytochrome b561 CH59_2012 PF09163 Formate dehydrogenase N, transmembrane CH59_2012 PF13247 4Fe-4S dicluster domain CH59_2013 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH59_2013 PF00384 Molybdopterin oxidoreductase CH59_2013 PF01568 Molydopterin dinucleotide binding domain CH59_2014 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH59_2014 PF00384 Molybdopterin oxidoreductase CH59_2014 PF01568 Molydopterin dinucleotide binding domain CH59_2015 PF02634 FdhD/NarQ family CH59_2016 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH59_2016 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH59_2017 PF01797 Transposase IS200 like CH59_2018 PF00672 HAMP domain CH59_2018 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH59_2018 PF02203 Tar ligand binding domain homologue CH59_2022 PF10928 Protein of unknown function (DUF2810) CH59_2024 PF05068 Mannitol repressor CH59_2025 PF08125 Mannitol dehydrogenase C-terminal domain CH59_2025 PF01232 Mannitol dehydrogenase Rossmann domain CH59_2026 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH59_2026 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH59_2026 PF02378 Phosphotransferase system, EIIC CH59_2027 PF11254 Protein of unknown function (DUF3053) CH59_2028 PF02092 Glycyl-tRNA synthetase beta subunit CH59_2028 PF05746 DALR anticodon binding domain CH59_2029 PF02091 Glycyl-tRNA synthetase alpha subunit CH59_203 PF00486 Transcriptional regulatory protein, C terminal CH59_203 PF00072 Response regulator receiver domain CH59_2031 PF03352 Methyladenine glycosylase CH59_2033 PF00691 OmpA family CH59_2033 PF13488 Glycine zipper CH59_2035 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH59_2035 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH59_2036 PF00128 Alpha amylase, catalytic domain CH59_2038 PF00155 Aminotransferase class I and II CH59_2039 PF02080 TrkA-C domain CH59_2039 PF06826 Predicted Permease Membrane Region CH59_204 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_204 PF08918 PhoQ Sensor CH59_2040 PF00011 Hsp20/alpha crystallin family CH59_2041 PF00011 Hsp20/alpha crystallin family CH59_2042 PF07119 Protein of unknown function (DUF1375) CH59_2043 PF07676 WD40-like Beta Propeller Repeat CH59_2043 PF12566 Protein of unknown function (DUF3748) CH59_2044 PF12566 Protein of unknown function (DUF3748) CH59_2044 PF07676 WD40-like Beta Propeller Repeat CH59_2045 PF13291 ACT domain CH59_2045 PF00291 Pyridoxal-phosphate dependent enzyme CH59_2046 PF02423 Ornithine cyclodeaminase/mu-crystallin family CH59_2049 PF13276 HTH-like domain CH59_2049 PF13333 Integrase core domain CH59_2049 PF00665 Integrase core domain CH59_205 PF08007 Cupin superfamily protein CH59_2051 PF00204 DNA gyrase B CH59_2051 PF00986 DNA gyrase B subunit, carboxyl terminus CH59_2051 PF18053 DNA gyrase B subunit insert domain CH59_2051 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_2051 PF01751 Toprim domain CH59_2052 PF02463 RecF/RecN/SMC N terminal domain CH59_2053 PF00712 DNA polymerase III beta subunit, N-terminal domain CH59_2053 PF02768 DNA polymerase III beta subunit, C-terminal domain CH59_2053 PF02767 DNA polymerase III beta subunit, central domain CH59_2054 PF08299 Bacterial dnaA protein helix-turn-helix CH59_2054 PF11638 DnaA N-terminal domain CH59_2054 PF00308 Bacterial dnaA protein CH59_2056 PF00468 Ribosomal protein L34 CH59_2057 PF00825 Ribonuclease P CH59_2058 PF01809 Putative membrane protein insertion efficiency factor CH59_2059 PF14849 YidC periplasmic domain CH59_2059 PF02096 60Kd inner membrane protein CH59_206 PF07687 Peptidase dimerisation domain CH59_206 PF01546 Peptidase family M20/M25/M40 CH59_2060 PF01926 50S ribosome-binding GTPase CH59_2060 PF12631 MnmE helical domain CH59_2060 PF10396 GTP-binding protein TrmE N-terminus CH59_2061 PF12241 Trans-2-enoyl-CoA reductase catalytic region CH59_2061 PF07055 Enoyl reductase FAD binding domain CH59_2061 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CH59_2064 PF00860 Permease family CH59_2065 PF13419 Haloacid dehalogenase-like hydrolase CH59_2066 PF00528 Binding-protein-dependent transport system inner membrane component CH59_2067 PF00528 Binding-protein-dependent transport system inner membrane component CH59_2068 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH59_207 PF02146 Sir2 family CH59_2070 PF01895 PhoU domain CH59_2071 PF00005 ABC transporter CH59_2072 PF00528 Binding-protein-dependent transport system inner membrane component CH59_2073 PF00528 Binding-protein-dependent transport system inner membrane component CH59_2074 PF12849 PBP superfamily domain CH59_2075 PF01380 SIS domain CH59_2076 PF00132 Bacterial transferase hexapeptide (six repeats) CH59_2076 PF12804 MobA-like NTP transferase domain CH59_2077 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CH59_2077 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CH59_2078 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH59_2078 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH59_2079 PF00231 ATP synthase CH59_208 PF00480 ROK family CH59_2080 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH59_2080 PF00306 ATP synthase alpha/beta chain, C terminal domain CH59_2080 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH59_2081 PF00213 ATP synthase delta (OSCP) subunit CH59_2082 PF00430 ATP synthase B/B' CF(0) CH59_2083 PF00137 ATP synthase subunit C CH59_2084 PF00119 ATP synthase A chain CH59_2085 PF03899 ATP synthase I chain CH59_2086 PF02527 rRNA small subunit methyltransferase G CH59_2087 PF01134 Glucose inhibited division protein A CH59_2087 PF13932 GidA associated domain CH59_2088 PF00258 Flavodoxin CH59_2089 PF01037 Lrp/AsnC ligand binding domain CH59_209 PF02687 FtsX-like permease family CH59_209 PF12704 MacB-like periplasmic core domain CH59_2090 PF03590 Aspartate-ammonia ligase CH59_2091 PF05762 VWA domain containing CoxE-like protein CH59_2092 PF07728 AAA domain (dynein-related subfamily) CH59_2092 PF12592 Protein of unknown function (DUF3763) CH59_2092 PF17868 AAA lid domain CH59_2093 PF01695 IstB-like ATP binding protein CH59_2094 PF02796 Helix-turn-helix domain of resolvase CH59_2094 PF00665 Integrase core domain CH59_2095 PF07728 AAA domain (dynein-related subfamily) CH59_2095 PF17868 AAA lid domain CH59_2095 PF12592 Protein of unknown function (DUF3763) CH59_2096 PF02705 K+ potassium transporter CH59_2097 PF05025 RbsD / FucU transport protein family CH59_2098 PF00294 pfkB family carbohydrate kinase CH59_2099 PF07690 Major Facilitator Superfamily CH59_210 PF00005 ABC transporter CH59_2101 PF07729 FCD domain CH59_2101 PF00392 Bacterial regulatory proteins, gntR family CH59_2106 PF00872 Transposase, Mutator family CH59_2107 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CH59_2108 PF12804 MobA-like NTP transferase domain CH59_2109 PF06288 Protein of unknown function (DUF1040) CH59_211 PF02687 FtsX-like permease family CH59_211 PF12704 MacB-like periplasmic core domain CH59_2110 PF01636 Phosphotransferase enzyme family CH59_2111 PF01323 DSBA-like thioredoxin domain CH59_2112 PF00476 DNA polymerase family A CH59_2112 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH59_2112 PF01612 3'-5' exonuclease CH59_2112 PF01367 5'-3' exonuclease, C-terminal SAM fold CH59_2113 PF01797 Transposase IS200 like CH59_2114 PF01926 50S ribosome-binding GTPase CH59_2115 PF04220 Der GTPase activator (YihI) CH59_2116 PF04055 Radical SAM superfamily CH59_2116 PF06969 HemN C-terminal domain CH59_2117 PF02954 Bacterial regulatory protein, Fis family CH59_2117 PF00158 Sigma-54 interaction domain CH59_2117 PF00072 Response regulator receiver domain CH59_2118 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_2118 PF00989 PAS fold CH59_2118 PF00512 His Kinase A (phospho-acceptor) domain CH59_2119 PF03951 Glutamine synthetase, beta-Grasp domain CH59_2119 PF00120 Glutamine synthetase, catalytic domain CH59_212 PF03461 TRCF domain CH59_212 PF17757 UvrB interaction domain CH59_212 PF00270 DEAD/DEAH box helicase CH59_212 PF00271 Helicase conserved C-terminal domain CH59_212 PF02559 CarD-like/TRCF domain CH59_2121 PF13419 Haloacid dehalogenase-like hydrolase CH59_2122 PF03631 Virulence factor BrkB CH59_2123 PF02580 D-Tyr-tRNA(Tyr) deacylase CH59_2124 PF01695 IstB-like ATP binding protein CH59_2125 PF00665 Integrase core domain CH59_2125 PF02796 Helix-turn-helix domain of resolvase CH59_2126 PF00583 Acetyltransferase (GNAT) family CH59_2126 PF09500 Putative thioesterase (yiiD_Cterm) CH59_2127 PF05170 AsmA family CH59_2128 PF00860 Permease family CH59_2129 PF03616 Sodium/glutamate symporter CH59_213 PF05433 Glycine zipper 2TM domain CH59_2130 PF00270 DEAD/DEAH box helicase CH59_2130 PF00271 Helicase conserved C-terminal domain CH59_2130 PF17191 RecG wedge domain CH59_2131 PF12105 SpoU, rRNA methylase, C-terminal CH59_2131 PF00588 SpoU rRNA Methylase family CH59_2132 PF13291 ACT domain CH59_2132 PF04607 Region found in RelA / SpoT proteins CH59_2132 PF02824 TGS domain CH59_2133 PF01192 RNA polymerase Rpb6 CH59_2134 PF00625 Guanylate kinase CH59_2135 PF01653 NAD-dependent DNA ligase adenylation domain CH59_2135 PF03120 NAD-dependent DNA ligase OB-fold domain CH59_2136 PF03458 UPF0126 domain CH59_2137 PF03755 YicC-like family, N-terminal region CH59_2137 PF08340 Domain of unknown function (DUF1732) CH59_2138 PF01138 3' exoribonuclease family, domain 1 CH59_2138 PF03725 3' exoribonuclease family, domain 2 CH59_2139 PF00156 Phosphoribosyl transferase domain CH59_214 PF02796 Helix-turn-helix domain of resolvase CH59_214 PF00665 Integrase core domain CH59_2140 PF00440 Bacterial regulatory proteins, tetR family CH59_2141 PF00692 dUTPase CH59_2142 PF04127 DNA / pantothenate metabolism flavoprotein CH59_2142 PF02441 Flavoprotein CH59_2143 PF04002 RadC-like JAB domain CH59_2144 PF00830 Ribosomal L28 family CH59_2145 PF00471 Ribosomal protein L33 CH59_2146 PF06827 Zinc finger found in FPG and IleRS CH59_2146 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CH59_2146 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CH59_2147 PF01467 Cytidylyltransferase-like CH59_2148 PF00535 Glycosyl transferase family 2 CH59_2149 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CH59_215 PF01695 IstB-like ATP binding protein CH59_2150 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH59_2151 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH59_2152 PF01370 NAD dependent epimerase/dehydratase family CH59_2153 PF00155 Aminotransferase class I and II CH59_2154 PF08240 Alcohol dehydrogenase GroES-like domain CH59_2154 PF00107 Zinc-binding dehydrogenase CH59_2155 PF04748 Divergent polysaccharide deacetylase CH59_2156 PF04748 Divergent polysaccharide deacetylase CH59_2157 PF01551 Peptidase family M23 CH59_2158 PF01676 Metalloenzyme superfamily CH59_2158 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CH59_2159 PF00581 Rhodanese-like domain CH59_216 PF00872 Transposase, Mutator family CH59_2160 PF00462 Glutaredoxin CH59_2161 PF02556 Preprotein translocase subunit SecB CH59_2162 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CH59_2162 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CH59_2163 PF06426 Serine acetyltransferase, N-terminal CH59_2163 PF00132 Bacterial transferase hexapeptide (six repeats) CH59_2164 PF00588 SpoU rRNA Methylase family CH59_2165 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH59_2165 PF02805 Metal binding domain of Ada CH59_2165 PF12833 Helix-turn-helix domain CH59_2165 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH59_2166 PF00672 HAMP domain CH59_2166 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_2166 PF16527 Two-component sensor protein CpxA, periplasmic domain CH59_2166 PF00512 His Kinase A (phospho-acceptor) domain CH59_2167 PF00072 Response regulator receiver domain CH59_2167 PF00486 Transcriptional regulatory protein, C terminal CH59_2168 PF07813 LTXXQ motif family protein CH59_2169 PF04754 Putative transposase, YhgA-like CH59_2170 PF01545 Cation efflux family CH59_2170 PF16916 Dimerisation domain of Zinc Transporter CH59_2171 PF00365 Phosphofructokinase CH59_2175 PF00939 Sodium:sulfate symporter transmembrane region CH59_2176 PF03737 Aldolase/RraA CH59_2177 PF02585 GlcNAc-PI de-N-acetylase CH59_2178 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_2178 PF03466 LysR substrate binding domain CH59_2179 PF00121 Triosephosphate isomerase CH59_2180 PF07305 Protein of unknown function (DUF1454) CH59_2181 PF05656 Protein of unknown function (DUF805) CH59_2182 PF00175 Oxidoreductase NAD-binding domain CH59_2182 PF00970 Oxidoreductase FAD-binding domain CH59_2183 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CH59_2184 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH59_2184 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH59_2185 PF00230 Major intrinsic protein CH59_2186 PF06005 Cell division protein ZapB CH59_2187 PF01797 Transposase IS200 like CH59_2188 PF00664 ABC transporter transmembrane region CH59_2188 PF00005 ABC transporter CH59_2188 PF03412 Peptidase C39 family CH59_2189 PF01695 IstB-like ATP binding protein CH59_219 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH59_2190 PF02796 Helix-turn-helix domain of resolvase CH59_2190 PF00665 Integrase core domain CH59_2191 PF00664 ABC transporter transmembrane region CH59_2191 PF00005 ABC transporter CH59_2191 PF03412 Peptidase C39 family CH59_2192 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH59_2192 PF00529 HlyD membrane-fusion protein of T1SS CH59_2195 PF03737 Aldolase/RraA CH59_2196 PF01040 UbiA prenyltransferase family CH59_2197 PF10431 C-terminal, D2-small domain, of ClpB protein CH59_2197 PF07724 AAA domain (Cdc48 subfamily) CH59_2197 PF00004 ATPase family associated with various cellular activities (AAA) CH59_2198 PF00227 Proteasome subunit CH59_2199 PF05036 Sporulation related domain CH59_22 PF05594 Haemagluttinin repeat CH59_22 PF13332 Hemagglutinin repeat CH59_22 PF04829 Pre-toxin domain with VENN motif CH59_22 PF15526 Novel toxin 21 CH59_22 PF05860 haemagglutination activity domain CH59_220 PF05728 Uncharacterised protein family (UPF0227) CH59_2200 PF00356 Bacterial regulatory proteins, lacI family CH59_2202 PF18074 Primosomal protein N C-terminal domain CH59_2202 PF17764 3′ DNA-binding domain (3′BD) CH59_2202 PF00271 Helicase conserved C-terminal domain CH59_2202 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CH59_2202 PF00270 DEAD/DEAH box helicase CH59_2203 PF01197 Ribosomal protein L31 CH59_2204 PF05360 yiaA/B two helix domain CH59_2205 PF01340 Met Apo-repressor, MetJ CH59_2206 PF01053 Cys/Met metabolism PLP-dependent enzyme CH59_2207 PF01053 Cys/Met metabolism PLP-dependent enzyme CH59_2208 PF03447 Homoserine dehydrogenase, NAD binding domain CH59_2208 PF00742 Homoserine dehydrogenase CH59_2208 PF00696 Amino acid kinase family CH59_2209 PF02219 Methylenetetrahydrofolate reductase CH59_221 PF00933 Glycosyl hydrolase family 3 N terminal domain CH59_2210 PF13276 HTH-like domain CH59_2210 PF13333 Integrase core domain CH59_2210 PF00665 Integrase core domain CH59_2212 PF08220 DeoR-like helix-turn-helix domain CH59_2212 PF00455 DeoR C terminal sensor domain CH59_2213 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CH59_2213 PF01694 Rhomboid family CH59_2214 PF00581 Rhodanese-like domain CH59_2215 PF00196 Bacterial regulatory proteins, luxR family CH59_2215 PF17874 MalT-like TPR region CH59_2216 PF00343 Carbohydrate phosphorylase CH59_2217 PF00343 Carbohydrate phosphorylase CH59_2218 PF02446 4-alpha-glucanotransferase CH59_2219 PF01106 NifU-like domain CH59_2219 PF01521 Iron-sulphur cluster biosynthesis CH59_222 PF01636 Phosphotransferase enzyme family CH59_2220 PF00156 Phosphoribosyl transferase domain CH59_2221 PF00561 alpha/beta hydrolase fold CH59_2222 PF07338 Protein of unknown function (DUF1471) CH59_2223 PF09012 FeoC like transcriptional regulator CH59_2224 PF07670 Nucleoside recognition CH59_2224 PF07664 Ferrous iron transport protein B C terminus CH59_2224 PF17910 FeoB cytosolic helical domain CH59_2224 PF02421 Ferrous iron transport protein B CH59_2225 PF04023 FeoA domain CH59_2226 PF00575 S1 RNA binding domain CH59_2226 PF09371 Tex-like protein N-terminal domain CH59_2226 PF16921 Tex protein YqgF-like domain CH59_2226 PF17674 HHH domain CH59_2227 PF01272 Transcription elongation factor, GreA/GreB, C-term CH59_2227 PF03449 Transcription elongation factor, N-terminal CH59_2228 PF00072 Response regulator receiver domain CH59_2228 PF00486 Transcriptional regulatory protein, C terminal CH59_2229 PF00672 HAMP domain CH59_2229 PF00512 His Kinase A (phospho-acceptor) domain CH59_2229 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_223 PF13036 Peptidoglycan-synthase activator LpoB CH59_223 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH59_2230 PF01293 Phosphoenolpyruvate carboxykinase CH59_2231 PF01430 Hsp33 protein CH59_2232 PF01479 S4 domain CH59_2233 PF13419 Haloacid dehalogenase-like hydrolase CH59_2234 PF07095 Intracellular growth attenuator protein IgaA CH59_2236 PF00293 NUDIX domain CH59_2237 PF00905 Penicillin binding protein transpeptidase domain CH59_2237 PF00912 Transglycosylase CH59_2237 PF17092 Penicillin-binding protein OB-like domain CH59_224 PF07233 Protein of unknown function (DUF1425) CH59_2242 PF03958 Bacterial type II/III secretion system short domain CH59_2242 PF00263 Bacterial type II and III secretion system protein CH59_2243 PF01202 Shikimate kinase CH59_2244 PF01761 3-dehydroquinate synthase CH59_2245 PF05036 Sporulation related domain CH59_2246 PF02086 D12 class N6 adenine-specific DNA methyltransferase CH59_2247 PF00834 Ribulose-phosphate 3 epimerase family CH59_2248 PF13419 Haloacid dehalogenase-like hydrolase CH59_2249 PF00579 tRNA synthetases class I (W and Y) CH59_225 PF01230 HIT domain CH59_2250 PF10414 Sirohaem synthase dimerisation region CH59_2250 PF14824 Sirohaem biosynthesis protein central CH59_2250 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH59_2251 PF01226 Formate/nitrite transporter CH59_2252 PF13806 Rieske-like [2Fe-2S] domain CH59_2253 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH59_2253 PF18267 Rubredoxin NAD+ reductase C-terminal domain CH59_2253 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH59_2253 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH59_2253 PF04324 BFD-like [2Fe-2S] binding domain CH59_2254 PF07969 Amidohydrolase family CH59_2255 PF07690 Major Facilitator Superfamily CH59_2257 PF01695 IstB-like ATP binding protein CH59_2258 PF02796 Helix-turn-helix domain of resolvase CH59_2258 PF00665 Integrase core domain CH59_226 PF08501 Shikimate dehydrogenase substrate binding domain CH59_2260 PF00356 Bacterial regulatory proteins, lacI family CH59_2261 PF11975 Family 4 glycosyl hydrolase C-terminal domain CH59_2261 PF02056 Family 4 glycosyl hydrolase CH59_2262 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH59_2263 PF05872 Bacterial protein of unknown function (DUF853) CH59_2264 PF00117 Glutamine amidotransferase class-I CH59_2265 PF00202 Aminotransferase class-III CH59_2266 PF12805 FUSC-like inner membrane protein yccS CH59_2267 PF00027 Cyclic nucleotide-binding domain CH59_2267 PF13545 Crp-like helix-turn-helix domain CH59_2268 PF02566 OsmC-like protein CH59_227 PF01797 Transposase IS200 like CH59_2270 PF00485 Phosphoribulokinase / Uridine kinase family CH59_2271 PF06794 Uncharacterised protein family (UPF0270) CH59_2272 PF00561 alpha/beta hydrolase fold CH59_2273 PF01810 LysE type translocator CH59_2274 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH59_2275 PF00005 ABC transporter CH59_2276 PF00528 Binding-protein-dependent transport system inner membrane component CH59_2277 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CH59_2279 PF00535 Glycosyl transferase family 2 CH59_228 PF02378 Phosphotransferase system, EIIC CH59_228 PF00367 phosphotransferase system, EIIB CH59_2280 PF12848 ABC transporter CH59_2280 PF00005 ABC transporter CH59_2281 PF12848 ABC transporter CH59_2281 PF00005 ABC transporter CH59_2282 PF02525 Flavodoxin-like fold CH59_2283 PF02254 TrkA-N domain CH59_2283 PF00999 Sodium/hydrogen exchanger family CH59_2284 PF09526 Probable metal-binding protein (DUF2387) CH59_2285 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH59_2286 PF04102 SlyX CH59_2287 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH59_2287 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH59_2288 PF08348 YheO-like PAS domain CH59_2288 PF13309 HTH domain CH59_2289 PF02635 DsrE/DsrF-like family CH59_229 PF01026 TatD related DNase CH59_2290 PF02635 DsrE/DsrF-like family CH59_2291 PF04077 DsrH like protein CH59_2292 PF00164 Ribosomal protein S12/S23 CH59_2293 PF00177 Ribosomal protein S7p/S5e CH59_2294 PF00009 Elongation factor Tu GTP binding domain CH59_2294 PF03144 Elongation factor Tu domain 2 CH59_2294 PF00679 Elongation factor G C-terminus CH59_2294 PF03764 Elongation factor G, domain IV CH59_2294 PF14492 Elongation Factor G, domain II CH59_2295 PF00009 Elongation factor Tu GTP binding domain CH59_2295 PF03143 Elongation factor Tu C-terminal domain CH59_2295 PF03144 Elongation factor Tu domain 2 CH59_2296 PF01797 Transposase IS200 like CH59_2297 PF04324 BFD-like [2Fe-2S] binding domain CH59_2298 PF00210 Ferritin-like domain CH59_2299 PF00338 Ribosomal protein S10p/S20e CH59_230 PF09115 DNA polymerase III, delta subunit, C terminal CH59_2300 PF00297 Ribosomal protein L3 CH59_2301 PF00573 Ribosomal protein L4/L1 family CH59_2302 PF00276 Ribosomal protein L23 CH59_2303 PF03947 Ribosomal Proteins L2, C-terminal domain CH59_2303 PF00181 Ribosomal Proteins L2, RNA binding domain CH59_2304 PF00203 Ribosomal protein S19 CH59_2305 PF00237 Ribosomal protein L22p/L17e CH59_2306 PF07650 KH domain CH59_2306 PF00189 Ribosomal protein S3, C-terminal domain CH59_2307 PF00252 Ribosomal protein L16p/L10e CH59_2308 PF00831 Ribosomal L29 protein CH59_2309 PF00366 Ribosomal protein S17 CH59_231 PF02223 Thymidylate kinase CH59_2310 PF00238 Ribosomal protein L14p/L23e CH59_2311 PF00467 KOW motif CH59_2311 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CH59_2312 PF00673 ribosomal L5P family C-terminus CH59_2312 PF00281 Ribosomal protein L5 CH59_2313 PF00253 Ribosomal protein S14p/S29e CH59_2314 PF00410 Ribosomal protein S8 CH59_2315 PF00347 Ribosomal protein L6 CH59_2316 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CH59_2317 PF00333 Ribosomal protein S5, N-terminal domain CH59_2317 PF03719 Ribosomal protein S5, C-terminal domain CH59_2318 PF00327 Ribosomal protein L30p/L7e CH59_2319 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CH59_232 PF02618 YceG-like family CH59_2320 PF00344 SecY translocase CH59_2321 PF00444 Ribosomal protein L36 CH59_2322 PF00416 Ribosomal protein S13/S18 CH59_2323 PF00411 Ribosomal protein S11 CH59_2324 PF01479 S4 domain CH59_2324 PF00163 Ribosomal protein S4/S9 N-terminal domain CH59_2325 PF01000 RNA polymerase Rpb3/RpoA insert domain CH59_2325 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CH59_2325 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CH59_2326 PF01196 Ribosomal protein L17 CH59_2327 PF13411 MerR HTH family regulatory protein CH59_2328 PF03889 Alternative ribosome-rescue factor A CH59_2329 PF01741 Large-conductance mechanosensitive channel, MscL CH59_233 PF01063 Amino-transferase class IV CH59_2330 PF02080 TrkA-C domain CH59_2330 PF02254 TrkA-N domain CH59_2331 PF01029 NusB family CH59_2331 PF01189 16S rRNA methyltransferase RsmB/F CH59_2332 PF02911 Formyl transferase, C-terminal domain CH59_2332 PF00551 Formyl transferase CH59_2333 PF01327 Polypeptide deformylase CH59_2334 PF02481 DNA recombination-mediator protein A CH59_2334 PF17782 DprA winged helix domain CH59_2335 PF04361 Protein of unknown function (DUF494) CH59_2336 PF01396 Topoisomerase DNA binding C4 zinc finger CH59_2337 PF01300 Telomere recombination CH59_2338 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CH59_2338 PF01488 Shikimate / quinate 5-dehydrogenase CH59_2338 PF08501 Shikimate dehydrogenase substrate binding domain CH59_2339 PF00132 Bacterial transferase hexapeptide (six repeats) CH59_234 PF01797 Transposase IS200 like CH59_2340 PF01695 IstB-like ATP binding protein CH59_2341 PF01695 IstB-like ATP binding protein CH59_2342 PF00665 Integrase core domain CH59_2342 PF02796 Helix-turn-helix domain of resolvase CH59_2343 PF00665 Integrase core domain CH59_2343 PF13333 Integrase core domain CH59_2343 PF13276 HTH-like domain CH59_235 PF00109 Beta-ketoacyl synthase, N-terminal domain CH59_235 PF02801 Beta-ketoacyl synthase, C-terminal domain CH59_2352 PF10431 C-terminal, D2-small domain, of ClpB protein CH59_2352 PF00004 ATPase family associated with various cellular activities (AAA) CH59_2352 PF07724 AAA domain (Cdc48 subfamily) CH59_2352 PF17871 AAA lid domain CH59_2359 PF04717 Type VI secretion system, phage-baseplate injector CH59_236 PF00550 Phosphopantetheine attachment site CH59_2362 PF14220 Domain of unknown function (DUF4329) CH59_2362 PF05593 RHS Repeat CH59_2362 PF03527 RHS protein CH59_2368 PF04717 Type VI secretion system, phage-baseplate injector CH59_2370 PF03527 RHS protein CH59_2370 PF05593 RHS Repeat CH59_2373 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH59_2373 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH59_2374 PF02311 AraC-like ligand binding domain CH59_2374 PF12833 Helix-turn-helix domain CH59_2375 PF05025 RbsD / FucU transport protein family CH59_2376 PF00294 pfkB family carbohydrate kinase CH59_2378 PF03358 NADPH-dependent FMN reductase CH59_2379 PF09084 NMT1/THI5 like CH59_238 PF00698 Acyl transferase domain CH59_2380 PF00296 Luciferase-like monooxygenase CH59_2381 PF00528 Binding-protein-dependent transport system inner membrane component CH59_2382 PF00005 ABC transporter CH59_2383 PF04221 RelB antitoxin CH59_2384 PF00860 Permease family CH59_2385 PF00999 Sodium/hydrogen exchanger family CH59_2387 PF03279 Bacterial lipid A biosynthesis acyltransferase CH59_2389 PF00005 ABC transporter CH59_239 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH59_239 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH59_2390 PF02653 Branched-chain amino acid transport system / permease component CH59_2392 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH59_2392 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH59_2393 PF00571 CBS domain CH59_2393 PF01380 SIS domain CH59_2394 PF02798 Glutathione S-transferase, N-terminal domain CH59_2397 PF01797 Transposase IS200 like CH59_2398 PF00313 'Cold-shock' DNA-binding domain CH59_2399 PF00313 'Cold-shock' DNA-binding domain CH59_240 PF02504 Fatty acid synthesis protein CH59_2400 PF05433 Glycine zipper 2TM domain CH59_2401 PF00753 Metallo-beta-lactamase superfamily CH59_2402 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CH59_2402 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH59_2403 PF02627 Carboxymuconolactone decarboxylase family CH59_2404 PF07690 Major Facilitator Superfamily CH59_2407 PF02954 Bacterial regulatory protein, Fis family CH59_2408 PF01207 Dihydrouridine synthase (Dus) CH59_241 PF01783 Ribosomal L32p protein family CH59_2410 PF00474 Sodium:solute symporter family CH59_2411 PF06196 Protein of unknown function (DUF997) CH59_2413 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH59_2413 PF00289 Biotin carboxylase, N-terminal domain CH59_2413 PF02785 Biotin carboxylase C-terminal domain CH59_2414 PF00364 Biotin-requiring enzyme CH59_2415 PF01220 Dehydroquinase class II CH59_2416 PF01794 Ferric reductase like transmembrane component CH59_2417 PF00174 Oxidoreductase molybdopterin binding domain CH59_2418 PF00107 Zinc-binding dehydrogenase CH59_2418 PF08240 Alcohol dehydrogenase GroES-like domain CH59_2419 PF00990 Diguanylate cyclase, GGDEF domain CH59_2419 PF00563 EAL domain CH59_2419 PF17157 Gammaproteobacterial periplasmic sensor domain CH59_242 PF02620 Large ribosomal RNA subunit accumulation protein YceD CH59_2421 PF04085 rod shape-determining protein MreC CH59_2422 PF04093 rod shape-determining protein MreD CH59_2423 PF02545 Maf-like protein CH59_2424 PF10150 Ribonuclease E/G family CH59_2424 PF00575 S1 RNA binding domain CH59_2425 PF13116 Protein of unknown function CH59_2425 PF13502 AsmA-like C-terminal region CH59_2426 PF00795 Carbon-nitrogen hydrolase CH59_2427 PF01523 Putative modulator of DNA gyrase CH59_2428 PF14431 YwqJ-like deaminase CH59_2428 PF18807 Tripartite Tc toxins repeat CH59_2429 PF18807 Tripartite Tc toxins repeat CH59_2429 PF05785 Rho-activating domain of cytotoxic necrotizing factor CH59_243 PF02545 Maf-like protein CH59_2439 PF03466 LysR substrate binding domain CH59_2439 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_244 PF01797 Transposase IS200 like CH59_2440 PF07869 Protein of unknown function (DUF1656) CH59_2441 PF13533 Biotin-lipoyl like CH59_2442 PF04632 Fusaric acid resistance protein family CH59_2443 PF00171 Aldehyde dehydrogenase family CH59_2444 PF00171 Aldehyde dehydrogenase family CH59_2446 PF01337 Barstar (barnase inhibitor) CH59_2447 PF04751 Protein of unknown function (DUF615) CH59_2448 PF01523 Putative modulator of DNA gyrase CH59_245 PF01479 S4 domain CH59_245 PF00849 RNA pseudouridylate synthase CH59_2450 PF07361 Cytochrome b562 CH59_2451 PF01272 Transcription elongation factor, GreA/GreB, C-term CH59_2451 PF14760 Rnk N-terminus CH59_2452 PF00128 Alpha amylase, catalytic domain CH59_2452 PF11941 Domain of unknown function (DUF3459) CH59_2453 PF00367 phosphotransferase system, EIIB CH59_2453 PF02378 Phosphotransferase system, EIIC CH59_2454 PF00356 Bacterial regulatory proteins, lacI family CH59_2456 PF01695 IstB-like ATP binding protein CH59_2457 PF02796 Helix-turn-helix domain of resolvase CH59_2457 PF00665 Integrase core domain CH59_2458 PF01042 Endoribonuclease L-PSP CH59_2459 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CH59_2459 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CH59_246 PF12111 Polyribonucleotide phosphorylase C terminal CH59_246 PF10150 Ribonuclease E/G family CH59_246 PF00575 S1 RNA binding domain CH59_2460 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH59_2460 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH59_2461 PF00381 PTS HPr component phosphorylation site CH59_2462 PF03668 P-loop ATPase protein family CH59_2463 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH59_2464 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH59_2465 PF00309 Sigma-54 factor, Activator interacting domain (AID) CH59_2465 PF04552 Sigma-54, DNA binding domain CH59_2465 PF04963 Sigma-54 factor, core binding domain CH59_2466 PF00005 ABC transporter CH59_2466 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH59_2467 PF03968 OstA-like protein CH59_2468 PF06835 Lipopolysaccharide-assembly, LptC-related CH59_247 PF09134 Invasin, domain 3 CH59_247 PF02369 Bacterial Ig-like domain (group 1) CH59_247 PF11924 Inverse autotransporter, beta-domain CH59_2470 PF00571 CBS domain CH59_2470 PF01380 SIS domain CH59_2471 PF01699 Sodium/calcium exchanger protein CH59_2472 PF00005 ABC transporter CH59_2473 PF02405 Permease MlaE CH59_2474 PF02470 MlaD protein CH59_2475 PF05494 MlaC protein CH59_2476 PF13466 STAS domain CH59_2477 PF01722 BolA-like protein CH59_2478 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH59_2479 PF13180 PDZ domain CH59_248 PF00872 Transposase, Mutator family CH59_2480 PF01797 Transposase IS200 like CH59_2481 PF13180 PDZ domain CH59_2481 PF00595 PDZ domain CH59_2482 PF06295 Protein of unknown function (DUF1043) CH59_2483 PF03969 AFG1-like ATPase CH59_2484 PF00572 Ribosomal protein L13 CH59_2485 PF00380 Ribosomal protein S9/S16 CH59_2486 PF02798 Glutathione S-transferase, N-terminal domain CH59_2486 PF00043 Glutathione S-transferase, C-terminal domain CH59_2487 PF04386 Stringent starvation protein B CH59_2489 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH59_2489 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH59_249 PF07690 Major Facilitator Superfamily CH59_2490 PF01493 GXGXG motif CH59_2490 PF01645 Conserved region in glutamate synthase CH59_2490 PF04898 Glutamate synthase central domain CH59_2490 PF00310 Glutamine amidotransferases class-II CH59_2491 PF16199 Radical_SAM C-terminal domain CH59_2491 PF04055 Radical SAM superfamily CH59_2492 PF00072 Response regulator receiver domain CH59_2492 PF18415 Histidine kinase receptor ArcB trans-membrane domain CH59_2492 PF00512 His Kinase A (phospho-acceptor) domain CH59_2492 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_2492 PF01627 Hpt domain CH59_2492 PF00989 PAS fold CH59_2494 PF00912 Transglycosylase CH59_2495 PF04972 BON domain CH59_2496 PF13580 SIS domain CH59_2497 PF02021 Uncharacterised protein family UPF0102 CH59_2498 PF04348 LppC putative lipoprotein CH59_2499 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH59_25 PF13332 Hemagglutinin repeat CH59_25 PF05860 haemagglutination activity domain CH59_25 PF13018 Extended Signal Peptide of Type V secretion system CH59_25 PF04829 Pre-toxin domain with VENN motif CH59_250 PF04134 Protein of unknown function, DUF393 CH59_2500 PF02678 Pirin CH59_2500 PF17954 Quercetinase C-terminal cupin domain CH59_2501 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_2501 PF03466 LysR substrate binding domain CH59_2502 PF13409 Glutathione S-transferase, N-terminal domain CH59_2503 PF01695 IstB-like ATP binding protein CH59_2504 PF00665 Integrase core domain CH59_2504 PF02796 Helix-turn-helix domain of resolvase CH59_2505 PF00326 Prolyl oligopeptidase family CH59_2507 PF01250 Ribosomal protein S6 CH59_2508 PF01084 Ribosomal protein S18 CH59_2509 PF01281 Ribosomal protein L9, N-terminal domain CH59_2509 PF03948 Ribosomal protein L9, C-terminal domain CH59_2510 PF01797 Transposase IS200 like CH59_2512 PF04225 Opacity-associated protein A LysM-like domain CH59_2512 PF08525 Opacity-associated protein A N-terminal motif CH59_2513 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH59_2513 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH59_2514 PF01814 Hemerythrin HHE cation binding domain CH59_2514 PF04405 Domain of Unknown function (DUF542) CH59_2515 PF00149 Calcineurin-like phosphoesterase CH59_2515 PF02872 5'-nucleotidase, C-terminal domain CH59_2516 PF00459 Inositol monophosphatase family CH59_2517 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CH59_2518 PF06526 Protein of unknown function (DUF1107) CH59_2519 PF00571 CBS domain CH59_2519 PF03471 Transporter associated domain CH59_2519 PF01595 Cyclin M transmembrane N-terminal domain CH59_252 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH59_2520 PF01625 Peptide methionine sulfoxide reductase CH59_2521 PF17243 POTRA domain TamA domain 1 CH59_2521 PF07244 Surface antigen variable number repeat CH59_2521 PF01103 Surface antigen CH59_2522 PF04357 TamB, inner membrane protein subunit of TAM complex CH59_2523 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CH59_2524 PF00719 Inorganic pyrophosphatase CH59_2525 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CH59_2526 PF08245 Mur ligase middle domain CH59_2526 PF01225 Mur ligase family, catalytic domain CH59_2526 PF02875 Mur ligase family, glutamate ligase domain CH59_2528 PF01316 Arginine repressor, DNA binding domain CH59_2528 PF02863 Arginine repressor, C-terminal domain CH59_2529 PF00056 lactate/malate dehydrogenase, NAD binding domain CH59_2529 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CH59_253 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH59_253 PF13378 Enolase C-terminal domain-like CH59_2530 PF13693 Winged helix-turn-helix DNA-binding CH59_2532 PF00348 Polyprenyl synthetase CH59_2533 PF00829 Ribosomal prokaryotic L21 protein CH59_2534 PF01016 Ribosomal L27 protein CH59_2535 PF00892 EamA-like transporter family CH59_2536 PF01018 GTP1/OBG CH59_2536 PF01926 50S ribosome-binding GTPase CH59_2537 PF00512 His Kinase A (phospho-acceptor) domain CH59_2537 PF00672 HAMP domain CH59_2537 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_2538 PF00072 Response regulator receiver domain CH59_2538 PF00486 Transcriptional regulatory protein, C terminal CH59_2539 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CH59_2540 PF01272 Transcription elongation factor, GreA/GreB, C-term CH59_2540 PF03449 Transcription elongation factor, N-terminal CH59_2541 PF01985 CRS1 / YhbY (CRM) domain CH59_2542 PF01728 FtsJ-like methyltransferase CH59_2543 PF01434 Peptidase family M41 CH59_2543 PF06480 FtsH Extracellular CH59_2543 PF17862 AAA+ lid domain CH59_2543 PF00004 ATPase family associated with various cellular activities (AAA) CH59_2544 PF00809 Pterin binding enzyme CH59_2545 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH59_2545 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH59_2545 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH59_2545 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH59_2546 PF03840 Preprotein translocase SecG subunit CH59_2549 PF17384 RimP C-terminal SH3 domain CH59_2549 PF02576 RimP N-terminal domain CH59_255 PF01070 FMN-dependent dehydrogenase CH59_2550 PF00575 S1 RNA binding domain CH59_2550 PF08529 NusA N-terminal domain CH59_2550 PF13184 NusA-like KH domain CH59_2551 PF04760 Translation initiation factor IF-2, N-terminal region CH59_2551 PF08364 Bacterial translation initiation factor IF-2 associated region CH59_2551 PF11987 Translation-initiation factor 2 CH59_2551 PF03144 Elongation factor Tu domain 2 CH59_2551 PF00009 Elongation factor Tu GTP binding domain CH59_2552 PF02033 Ribosome-binding factor A CH59_2553 PF16198 tRNA pseudouridylate synthase B C-terminal domain CH59_2553 PF09157 Pseudouridine synthase II TruB, C-terminal CH59_2553 PF01509 TruB family pseudouridylate synthase (N terminal domain) CH59_2554 PF00312 Ribosomal protein S15 CH59_2556 PF00665 Integrase core domain CH59_2556 PF13276 HTH-like domain CH59_2556 PF13333 Integrase core domain CH59_2557 PF00013 KH domain CH59_2557 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CH59_2557 PF01138 3' exoribonuclease family, domain 1 CH59_2557 PF03725 3' exoribonuclease family, domain 2 CH59_2557 PF00575 S1 RNA binding domain CH59_2558 PF07719 Tetratricopeptide repeat CH59_2558 PF13181 Tetratricopeptide repeat CH59_2559 PF00270 DEAD/DEAH box helicase CH59_2559 PF03880 DbpA RNA binding domain CH59_2559 PF00271 Helicase conserved C-terminal domain CH59_2559 PF12343 Cold shock protein DEAD box A CH59_256 PF00764 Arginosuccinate synthase CH59_2561 PF01381 Helix-turn-helix CH59_2562 PF00296 Luciferase-like monooxygenase CH59_2564 PF00529 HlyD membrane-fusion protein of T1SS CH59_2564 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH59_2565 PF00873 AcrB/AcrD/AcrF family CH59_2566 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH59_2566 PF02321 Outer membrane efflux protein CH59_257 PF01554 MatE CH59_2570 PF13508 Acetyltransferase (GNAT) domain CH59_2571 PF01541 GIY-YIG catalytic domain CH59_2574 PF13416 Bacterial extracellular solute-binding protein CH59_2576 PF00528 Binding-protein-dependent transport system inner membrane component CH59_2577 PF00005 ABC transporter CH59_2577 PF03459 TOBE domain CH59_2577 PF17912 MalK OB fold domain CH59_2580 PF13460 NAD(P)H-binding CH59_2581 PF12706 Beta-lactamase superfamily domain CH59_2583 PF07969 Amidohydrolase family CH59_2584 PF00005 ABC transporter CH59_2585 PF00005 ABC transporter CH59_2586 PF06007 Phosphonate metabolism protein PhnJ CH59_2587 PF05861 Bacterial phosphonate metabolism protein (PhnI) CH59_2588 PF05845 Bacterial phosphonate metabolism protein (PhnH) CH59_2589 PF06754 Phosphonate metabolism protein PhnG CH59_259 PF01522 Polysaccharide deacetylase CH59_2590 PF07702 UTRA domain CH59_2590 PF00392 Bacterial regulatory proteins, gntR family CH59_2593 PF03477 ATP cone domain CH59_2593 PF13597 Anaerobic ribonucleoside-triphosphate reductase CH59_2594 PF00005 ABC transporter CH59_2594 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH59_2595 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH59_2595 PF00005 ABC transporter CH59_2596 PF12911 N-terminal TM domain of oligopeptide transport permease C CH59_2596 PF00528 Binding-protein-dependent transport system inner membrane component CH59_2597 PF00528 Binding-protein-dependent transport system inner membrane component CH59_2600 PF04074 YhcH/YjgK/YiaL CH59_2601 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH59_2601 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH59_2602 PF06877 Regulator of ribonuclease activity B CH59_2603 PF00583 Acetyltransferase (GNAT) family CH59_2604 PF08264 Anticodon-binding domain of tRNA CH59_2604 PF10458 Valyl tRNA synthetase tRNA binding arm CH59_2604 PF00133 tRNA synthetases class I (I, L, M and V) CH59_2605 PF04364 DNA polymerase III chi subunit, HolC CH59_2606 PF00883 Cytosol aminopeptidase family, catalytic domain CH59_2606 PF02789 Cytosol aminopeptidase family, N-terminal domain CH59_2607 PF03739 Lipopolysaccharide export system permease LptF/LptG CH59_2608 PF03739 Lipopolysaccharide export system permease LptF/LptG CH59_261 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CH59_2610 PF00589 Phage integrase family CH59_2610 PF13356 Arm DNA-binding domain CH59_2612 PF08676 MutL C terminal dimerisation domain CH59_2612 PF01119 DNA mismatch repair protein, C-terminal domain CH59_2613 PF01695 IstB-like ATP binding protein CH59_2615 PF00665 Integrase core domain CH59_2615 PF02796 Helix-turn-helix domain of resolvase CH59_2616 PF01797 Transposase IS200 like CH59_2617 PF03884 DNA gyrase inhibitor YacG CH59_2618 PF07072 Cell division protein CH59_2619 PF01121 Dephospho-CoA kinase CH59_2620 PF00478 IMP dehydrogenase / GMP reductase domain CH59_2621 PF00482 Type II secretion system (T2SS), protein F CH59_2622 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CH59_2622 PF00437 Type II/IV secretion system protein CH59_2623 PF07963 Prokaryotic N-terminal methylation motif CH59_2624 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CH59_2624 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CH59_2625 PF01510 N-acetylmuramoyl-L-alanine amidase CH59_2626 PF17113 Regulatory signalling modulator protein AmpE CH59_2627 PF00324 Amino acid permease CH59_2628 PF07729 FCD domain CH59_2628 PF00392 Bacterial regulatory proteins, gntR family CH59_2629 PF00456 Transketolase, thiamine diphosphate binding domain CH59_2629 PF17831 Pyruvate dehydrogenase E1 component middle domain CH59_263 PF00072 Response regulator receiver domain CH59_263 PF00196 Bacterial regulatory proteins, luxR family CH59_2630 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH59_2630 PF00364 Biotin-requiring enzyme CH59_2630 PF02817 e3 binding domain CH59_2631 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH59_2631 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH59_2632 PF01797 Transposase IS200 like CH59_2633 PF00330 Aconitase family (aconitate hydratase) CH59_2633 PF06434 Aconitate hydratase 2 N-terminus CH59_2633 PF11791 Aconitate B N-terminal domain CH59_2634 PF06062 Uncharacterised protein family (UPF0231) CH59_2635 PF00892 EamA-like transporter family CH59_2636 PF02675 S-adenosylmethionine decarboxylase CH59_2637 PF17284 Spermidine synthase tetramerisation domain CH59_2638 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) CH59_2639 PF07732 Multicopper oxidase CH59_2639 PF07731 Multicopper oxidase CH59_2639 PF00394 Multicopper oxidase CH59_2639 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH59_264 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH59_2640 PF00156 Phosphoribosyl transferase domain CH59_2641 PF00484 Carbonic anhydrase CH59_2642 PF00005 ABC transporter CH59_2643 PF01061 ABC-2 type transporter CH59_2644 PF01522 Polysaccharide deacetylase CH59_2645 PF02261 Aspartate decarboxylase CH59_2646 PF02569 Pantoate-beta-alanine ligase CH59_2647 PF02548 Ketopantoate hydroxymethyltransferase CH59_2648 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CH59_2649 PF12627 Probable RNA and SrmB- binding site of polymerase A CH59_2649 PF12626 Polymerase A arginine-rich C-terminus CH59_2649 PF01743 Poly A polymerase head domain CH59_2650 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH59_2651 PF01258 Prokaryotic dksA/traR C4-type zinc finger CH59_2652 PF17746 SfsA N-terminal OB domain CH59_2652 PF03749 Sugar fermentation stimulation protein RE domain CH59_2653 PF02834 LigT like Phosphoesterase CH59_2654 PF00270 DEAD/DEAH box helicase CH59_2654 PF04408 Helicase associated domain (HA2) CH59_2654 PF08482 ATP-dependent helicase C-terminal CH59_2654 PF00271 Helicase conserved C-terminal domain CH59_2655 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal CH59_2655 PF00912 Transglycosylase CH59_2655 PF00905 Penicillin binding protein transpeptidase domain CH59_2655 PF14814 Bifunctional transglycosylase second domain CH59_2656 PF00005 ABC transporter CH59_2657 PF01497 Periplasmic binding protein CH59_2658 PF01032 FecCD transport family CH59_2659 PF00202 Aminotransferase class-III CH59_266 PF03480 Bacterial extracellular solute-binding protein, family 7 CH59_2660 PF00654 Voltage gated chloride channel CH59_2661 PF01521 Iron-sulphur cluster biosynthesis CH59_2662 PF03458 UPF0126 domain CH59_2663 PF01497 Periplasmic binding protein CH59_2664 PF01048 Phosphorylase superfamily CH59_2665 PF13286 Phosphohydrolase-associated domain CH59_2665 PF01966 HD domain CH59_2666 PF00595 PDZ domain CH59_2667 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_2667 PF00672 HAMP domain CH59_2667 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH59_2667 PF01627 Hpt domain CH59_2667 PF00512 His Kinase A (phospho-acceptor) domain CH59_2667 PF00072 Response regulator receiver domain CH59_2668 PF02824 TGS domain CH59_2668 PF04607 Region found in RelA / SpoT proteins CH59_2668 PF13291 ACT domain CH59_2669 PF03819 MazG nucleotide pyrophosphohydrolase domain CH59_267 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CH59_267 PF01648 4'-phosphopantetheinyl transferase superfamily CH59_2670 PF00117 Glutamine amidotransferase class-I CH59_2670 PF06418 CTP synthase N-terminus CH59_2671 PF00113 Enolase, C-terminal TIM barrel domain CH59_2671 PF03952 Enolase, N-terminal domain CH59_2672 PF00080 Copper/zinc superoxide dismutase (SODC) CH59_2673 PF04055 Radical SAM superfamily CH59_2674 PF01242 6-pyruvoyl tetrahydropterin synthase CH59_2675 PF00175 Oxidoreductase NAD-binding domain CH59_2675 PF00258 Flavodoxin CH59_2675 PF00667 FAD binding domain CH59_2676 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH59_2676 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH59_2677 PF01507 Phosphoadenosine phosphosulfate reductase family CH59_2678 PF01507 Phosphoadenosine phosphosulfate reductase family CH59_2682 PF14824 Sirohaem biosynthesis protein central CH59_2682 PF10414 Sirohaem synthase dimerisation region CH59_2682 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH59_2683 PF01507 Phosphoadenosine phosphosulfate reductase family CH59_2684 PF00009 Elongation factor Tu GTP binding domain CH59_2686 PF12084 Protein of unknown function (DUF3561) CH59_2687 PF04977 Septum formation initiator CH59_2688 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CH59_2689 PF02542 YgbB family CH59_2690 PF01142 tRNA pseudouridine synthase D (TruD) CH59_2691 PF01975 Survival protein SurE CH59_2693 PF01551 Peptidase family M23 CH59_2693 PF01476 LysM domain CH59_2694 PF04542 Sigma-70 region 2 CH59_2694 PF04545 Sigma-70, region 4 CH59_2694 PF04539 Sigma-70 region 3 CH59_2694 PF00140 Sigma-70 factor, region 1.2 CH59_2695 PF01624 MutS domain I CH59_2695 PF05190 MutS family domain IV CH59_2695 PF05192 MutS domain III CH59_2695 PF05188 MutS domain II CH59_2695 PF00488 MutS domain V CH59_2696 PF02502 Ribose/Galactose Isomerase CH59_2697 PF00107 Zinc-binding dehydrogenase CH59_2697 PF08240 Alcohol dehydrogenase GroES-like domain CH59_2699 PF02733 Dak1 domain CH59_270 PF16874 Glycosyl hydrolase family 36 C-terminal domain CH59_270 PF16875 Glycosyl hydrolase family 36 N-terminal domain CH59_2700 PF02734 DAK2 domain CH59_2701 PF13936 Helix-turn-helix domain CH59_2701 PF04198 Putative sugar-binding domain CH59_2702 PF02040 Arsenical pump membrane protein CH59_2703 PF01022 Bacterial regulatory protein, arsR family CH59_2706 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH59_2707 PF03150 Di-haem cytochrome c peroxidase CH59_2707 PF14376 Haem-binding domain CH59_2707 PF00034 Cytochrome c CH59_2709 PF07715 TonB-dependent Receptor Plug Domain CH59_2709 PF00593 TonB dependent receptor CH59_271 PF01306 LacY proton/sugar symporter CH59_2712 PF00557 Metallopeptidase family M24 CH59_2714 PF05683 Fumarase C-terminus CH59_2714 PF05681 Fumarate hydratase (Fumerase) CH59_2715 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH59_2715 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH59_2716 PF01261 Xylose isomerase-like TIM barrel CH59_2717 PF02653 Branched-chain amino acid transport system / permease component CH59_2718 PF02653 Branched-chain amino acid transport system / permease component CH59_2719 PF00005 ABC transporter CH59_272 PF13991 BssS protein family CH59_2720 PF01797 Transposase IS200 like CH59_2722 PF00455 DeoR C terminal sensor domain CH59_2722 PF08220 DeoR-like helix-turn-helix domain CH59_2723 PF00596 Class II Aldolase and Adducin N-terminal domain CH59_2724 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH59_2724 PF00384 Molybdopterin oxidoreductase CH59_2724 PF01568 Molydopterin dinucleotide binding domain CH59_2725 PF13247 4Fe-4S dicluster domain CH59_2725 PF12800 4Fe-4S binding domain CH59_2726 PF04976 DMSO reductase anchor subunit (DmsC) CH59_2727 PF02613 Nitrate reductase delta subunit CH59_2728 PF01292 Prokaryotic cytochrome b561 CH59_2729 PF07361 Cytochrome b562 CH59_273 PF00872 Transposase, Mutator family CH59_2730 PF00141 Peroxidase CH59_2733 PF00005 ABC transporter CH59_2734 PF02653 Branched-chain amino acid transport system / permease component CH59_2735 PF00456 Transketolase, thiamine diphosphate binding domain CH59_2736 PF02780 Transketolase, C-terminal domain CH59_2736 PF02779 Transketolase, pyrimidine binding domain CH59_2737 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH59_2737 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH59_274 PF06183 DinI-like family CH59_2740 PF07690 Major Facilitator Superfamily CH59_2741 PF02464 Competence-damaged protein CH59_2742 PF00154 recA bacterial DNA recombination protein CH59_2743 PF02631 RecX family CH59_2744 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH59_2744 PF01411 tRNA synthetases class II (A) CH59_2744 PF02272 DHHA1 domain CH59_2745 PF02599 Global regulator protein family CH59_275 PF01979 Amidohydrolase family CH59_2750 PF13419 Haloacid dehalogenase-like hydrolase CH59_2751 PF09335 SNARE associated Golgi protein CH59_2752 PF04262 Glutamate-cysteine ligase CH59_2753 PF02664 S-Ribosylhomocysteinase (LuxS) CH59_2754 PF01797 Transposase IS200 like CH59_2755 PF01797 Transposase IS200 like CH59_2756 PF01595 Cyclin M transmembrane N-terminal domain CH59_2756 PF03471 Transporter associated domain CH59_2756 PF00571 CBS domain CH59_2757 PF01578 Cytochrome C assembly protein CH59_2758 PF00448 SRP54-type protein, GTPase domain CH59_2758 PF02881 SRP54-type protein, helical bundle domain CH59_2758 PF02978 Signal peptide binding domain CH59_2759 PF00886 Ribosomal protein S16 CH59_276 PF03992 Antibiotic biosynthesis monooxygenase CH59_2760 PF05239 PRC-barrel domain CH59_2760 PF01782 RimM N-terminal domain CH59_2761 PF01746 tRNA (Guanine-1)-methyltransferase CH59_2762 PF01245 Ribosomal protein L19 CH59_2763 PF01797 Transposase IS200 like CH59_2764 PF04338 Protein of unknown function, DUF481 CH59_2765 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH59_2766 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH59_2767 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH59_2768 PF00072 Response regulator receiver domain CH59_2768 PF04397 LytTr DNA-binding domain CH59_2769 PF00793 DAHP synthetase I family CH59_277 PF00872 Transposase, Mutator family CH59_2770 PF01817 Chorismate mutase type II CH59_2770 PF02153 Prephenate dehydrogenase CH59_2771 PF01817 Chorismate mutase type II CH59_2771 PF00800 Prephenate dehydratase CH59_2772 PF01695 IstB-like ATP binding protein CH59_2775 PF00665 Integrase core domain CH59_2775 PF02796 Helix-turn-helix domain of resolvase CH59_2776 PF01817 Chorismate mutase type II CH59_2776 PF00800 Prephenate dehydratase CH59_2777 PF01797 Transposase IS200 like CH59_2778 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH59_2779 PF13525 Outer membrane lipoprotein CH59_278 PF04363 Protein of unknown function (DUF496) CH59_2780 PF00849 RNA pseudouridylate synthase CH59_2780 PF01479 S4 domain CH59_2782 PF10431 C-terminal, D2-small domain, of ClpB protein CH59_2782 PF02861 Clp amino terminal domain, pathogenicity island component CH59_2782 PF07724 AAA domain (Cdc48 subfamily) CH59_2782 PF00004 ATPase family associated with various cellular activities (AAA) CH59_2782 PF17871 AAA lid domain CH59_2789 PF10043 Predicted periplasmic lipoprotein (DUF2279) CH59_2790 PF13091 PLD-like domain CH59_2791 PF13380 CoA binding domain CH59_2791 PF00583 Acetyltransferase (GNAT) family CH59_2791 PF13607 Succinyl-CoA ligase like flavodoxin domain CH59_2793 PF00085 Thioredoxin CH59_2794 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH59_2794 PF00588 SpoU rRNA Methylase family CH59_2795 PF07690 Major Facilitator Superfamily CH59_2796 PF00529 HlyD membrane-fusion protein of T1SS CH59_2796 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH59_2797 PF01047 MarR family CH59_2798 PF05437 Branched-chain amino acid transport protein (AzlD) CH59_2799 PF03591 AzlC protein CH59_28 PF05860 haemagglutination activity domain CH59_28 PF13332 Hemagglutinin repeat CH59_28 PF13018 Extended Signal Peptide of Type V secretion system CH59_28 PF04829 Pre-toxin domain with VENN motif CH59_280 PF00929 Exonuclease CH59_280 PF08411 Exonuclease C-terminal CH59_2800 PF07690 Major Facilitator Superfamily CH59_2802 PF01425 Amidase CH59_2805 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH59_2806 PF00528 Binding-protein-dependent transport system inner membrane component CH59_2808 PF00005 ABC transporter CH59_2809 PF00266 Aminotransferase class-V CH59_281 PF13520 Amino acid permease CH59_2810 PF01695 IstB-like ATP binding protein CH59_2813 PF00665 Integrase core domain CH59_2813 PF02796 Helix-turn-helix domain of resolvase CH59_2814 PF00480 ROK family CH59_2815 PF04381 Putative exonuclease, RdgC CH59_2816 PF06865 Pyrimidine/purine nucleoside phosphorylase CH59_2817 PF01202 Shikimate kinase CH59_2819 PF08241 Methyltransferase domain CH59_2821 PF07238 PilZ domain CH59_2821 PF07317 Flagellar regulator YcgR CH59_2822 PF00171 Aldehyde dehydrogenase family CH59_2823 PF00696 Amino acid kinase family CH59_2823 PF01472 PUA domain CH59_2824 PF07417 Sigma factor-binding transcriptional regulator Crl CH59_2826 PF00156 Phosphoribosyl transferase domain CH59_283 PF00465 Iron-containing alcohol dehydrogenase CH59_2830 PF07687 Peptidase dimerisation domain CH59_2830 PF01546 Peptidase family M20/M25/M40 CH59_2831 PF11798 IMS family HHH motif CH59_2831 PF00817 impB/mucB/samB family CH59_2831 PF11799 impB/mucB/samB family C-terminal domain CH59_2832 PF03009 Glycerophosphoryl diester phosphodiesterase family CH59_2834 PF02424 ApbE family CH59_2835 PF00970 Oxidoreductase FAD-binding domain CH59_2835 PF00111 2Fe-2S iron-sulfur cluster binding domain CH59_2835 PF00175 Oxidoreductase NAD-binding domain CH59_2836 PF02508 Rnf-Nqr subunit, membrane protein CH59_2837 PF02508 Rnf-Nqr subunit, membrane protein CH59_2838 PF04205 FMN-binding domain CH59_2839 PF03116 NQR2, RnfD, RnfE family CH59_284 PF00005 ABC transporter CH59_2840 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CH59_2840 PF11973 NQRA C-terminal domain CH59_2841 PF13230 Glutamine amidotransferases class-II CH59_2842 PF03734 L,D-transpeptidase catalytic domain CH59_2843 PF13580 SIS domain CH59_2844 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH59_2844 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH59_2844 PF09317 Domain of unknown function (DUF1974) CH59_2846 PF18071 HMW1C N-terminal CH59_2846 PF18254 HMW1 domain 2 CH59_2847 PF05860 haemagglutination activity domain CH59_2848 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH59_2848 PF08479 POTRA domain, ShlB-type CH59_2849 PF07687 Peptidase dimerisation domain CH59_2849 PF01546 Peptidase family M20/M25/M40 CH59_285 PF00005 ABC transporter CH59_2850 PF00266 Aminotransferase class-V CH59_2851 PF00665 Integrase core domain CH59_2851 PF02796 Helix-turn-helix domain of resolvase CH59_2852 PF01695 IstB-like ATP binding protein CH59_2853 PF13476 AAA domain CH59_2854 PF12320 Type 5 capsule protein repressor C-terminal domain CH59_2854 PF00149 Calcineurin-like phosphoesterase CH59_2855 PF00486 Transcriptional regulatory protein, C terminal CH59_2855 PF00072 Response regulator receiver domain CH59_2856 PF11808 Phosphate regulon sensor protein PhoR CH59_2856 PF00512 His Kinase A (phospho-acceptor) domain CH59_2856 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_2856 PF00989 PAS fold CH59_2857 PF12849 PBP superfamily domain CH59_2858 PF05525 Branched-chain amino acid transport protein CH59_2859 PF00324 Amino acid permease CH59_286 PF02653 Branched-chain amino acid transport system / permease component CH59_2860 PF01797 Transposase IS200 like CH59_2861 PF00128 Alpha amylase, catalytic domain CH59_2861 PF02903 Alpha amylase, N-terminal ig-like domain CH59_2865 PF01797 Transposase IS200 like CH59_2866 PF00578 AhpC/TSA family CH59_2866 PF10417 C-terminal domain of 1-Cys peroxiredoxin CH59_2867 PF04336 Acyl carrier protein phosphodiesterase CH59_2868 PF02547 Queuosine biosynthesis protein CH59_2869 PF01702 Queuine tRNA-ribosyltransferase CH59_2870 PF02699 Preprotein translocase subunit CH59_2871 PF07549 SecD/SecF GG Motif CH59_2871 PF13721 SecD export protein N-terminal TM region CH59_2871 PF02355 Protein export membrane protein CH59_2872 PF07549 SecD/SecF GG Motif CH59_2872 PF02355 Protein export membrane protein CH59_2873 PF01797 Transposase IS200 like CH59_2876 PF03477 ATP cone domain CH59_2877 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH59_2877 PF01872 RibD C-terminal domain CH59_2878 PF00885 6,7-dimethyl-8-ribityllumazine synthase CH59_2879 PF01029 NusB family CH59_288 PF01370 NAD dependent epimerase/dehydratase family CH59_2880 PF00586 AIR synthase related protein, N-terminal domain CH59_2880 PF02769 AIR synthase related protein, C-terminal domain CH59_2881 PF04608 Phosphatidylglycerophosphatase A CH59_2882 PF01797 Transposase IS200 like CH59_2883 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CH59_2883 PF02780 Transketolase, C-terminal domain CH59_2883 PF02779 Transketolase, pyrimidine binding domain CH59_2884 PF00348 Polyprenyl synthetase CH59_2885 PF02609 Exonuclease VII small subunit CH59_2886 PF02568 Thiamine biosynthesis protein (ThiI) CH59_2886 PF02926 THUMP domain CH59_2887 PF01965 DJ-1/PfpI family CH59_2888 PF02558 Ketopantoate reductase PanE/ApbA CH59_2888 PF08546 Ketopantoate reductase PanE/ApbA C terminal CH59_2889 PF04461 Protein of unknown function (DUF520) CH59_289 PF08029 HisG, C-terminal domain CH59_289 PF01634 ATP phosphoribosyltransferase CH59_2890 PF07690 Major Facilitator Superfamily CH59_2891 PF01040 UbiA prenyltransferase family CH59_2892 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CH59_2893 PF00510 Cytochrome c oxidase subunit III CH59_2894 PF00115 Cytochrome C and Quinol oxidase polypeptide I CH59_2895 PF06481 COX Aromatic Rich Motif CH59_2895 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CH59_2896 PF03502 Nucleoside-specific channel-forming protein, Tsx CH59_2897 PF07690 Major Facilitator Superfamily CH59_2898 PF03923 Uncharacterized lipoprotein CH59_2898 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH59_2899 PF01722 BolA-like protein CH59_29 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH59_29 PF17287 POTRA domain CH59_29 PF08479 POTRA domain, ShlB-type CH59_290 PF00815 Histidinol dehydrogenase CH59_2901 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH59_2901 PF05698 Bacterial trigger factor protein (TF) C-terminus CH59_2901 PF05697 Bacterial trigger factor protein (TF) CH59_2902 PF00574 Clp protease CH59_2903 PF06689 ClpX C4-type zinc finger CH59_2903 PF10431 C-terminal, D2-small domain, of ClpB protein CH59_2903 PF07724 AAA domain (Cdc48 subfamily) CH59_2904 PF02190 ATP-dependent protease La (LON) substrate-binding domain CH59_2904 PF05362 Lon protease (S16) C-terminal proteolytic domain CH59_2904 PF00004 ATPase family associated with various cellular activities (AAA) CH59_2905 PF00216 Bacterial DNA-binding protein CH59_2907 PF01797 Transposase IS200 like CH59_2908 PF13145 PPIC-type PPIASE domain CH59_291 PF00155 Aminotransferase class I and II CH59_2911 PF06508 Queuosine biosynthesis protein QueC CH59_2912 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH59_2912 PF12793 Sugar transport-related sRNA regulator N-term CH59_2914 PF00291 Pyridoxal-phosphate dependent enzyme CH59_2915 PF01037 Lrp/AsnC ligand binding domain CH59_2915 PF13404 AsnC-type helix-turn-helix domain CH59_2916 PF00664 ABC transporter transmembrane region CH59_2916 PF00005 ABC transporter CH59_2917 PF00005 ABC transporter CH59_2917 PF00664 ABC transporter transmembrane region CH59_2918 PF00543 Nitrogen regulatory protein P-II CH59_2919 PF01695 IstB-like ATP binding protein CH59_292 PF00475 Imidazoleglycerol-phosphate dehydratase CH59_2922 PF02796 Helix-turn-helix domain of resolvase CH59_2922 PF00665 Integrase core domain CH59_2924 PF00909 Ammonium Transporter Family CH59_2926 PF09619 Type III secretion system lipoprotein chaperone (YscW) CH59_2927 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH59_2928 PF05321 Haemolysin expression modulating protein CH59_2929 PF10757 Biofilm formation regulator YbaJ CH59_293 PF00117 Glutamine amidotransferase class-I CH59_2931 PF00444 Ribosomal protein L36 CH59_2932 PF01197 Ribosomal protein L31 CH59_2933 PF00873 AcrB/AcrD/AcrF family CH59_2934 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH59_2934 PF00529 HlyD membrane-fusion protein of T1SS CH59_2935 PF08361 MAATS-type transcriptional repressor, C-terminal region CH59_2935 PF00440 Bacterial regulatory proteins, tetR family CH59_2936 PF02635 DsrE/DsrF-like family CH59_2937 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH59_2937 PF12795 Mechanosensitive ion channel porin domain CH59_2937 PF00924 Mechanosensitive ion channel CH59_2939 PF04304 Protein of unknown function (DUF454) CH59_294 PF00977 Histidine biosynthesis protein CH59_2940 PF00665 Integrase core domain CH59_2940 PF02796 Helix-turn-helix domain of resolvase CH59_2941 PF01695 IstB-like ATP binding protein CH59_2942 PF00156 Phosphoribosyl transferase domain CH59_2943 PF12169 DNA polymerase III subunits gamma and tau domain III CH59_2943 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CH59_2943 PF12170 DNA polymerase III tau subunit V interacting with alpha CH59_2944 PF02575 YbaB/EbfC DNA-binding family CH59_2945 PF02132 RecR protein CH59_2945 PF13662 Toprim domain CH59_2946 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_2946 PF00183 Hsp90 protein CH59_2947 PF05191 Adenylate kinase, active site lid CH59_2948 PF00762 Ferrochelatase CH59_2949 PF00175 Oxidoreductase NAD-binding domain CH59_2949 PF00111 2Fe-2S iron-sulfur cluster binding domain CH59_2949 PF00970 Oxidoreductase FAD-binding domain CH59_295 PF00977 Histidine biosynthesis protein CH59_2950 PF00483 Nucleotidyl transferase CH59_2951 PF16363 GDP-mannose 4,6 dehydratase CH59_2952 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH59_2953 PF01370 NAD dependent epimerase/dehydratase family CH59_296 PF01502 Phosphoribosyl-AMP cyclohydrolase CH59_296 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CH59_2961 PF00534 Glycosyl transferases group 1 CH59_2961 PF13439 Glycosyltransferase Family 4 CH59_2962 PF16363 GDP-mannose 4,6 dehydratase CH59_2963 PF16363 GDP-mannose 4,6 dehydratase CH59_2966 PF01050 Mannose-6-phosphate isomerase CH59_2966 PF00483 Nucleotidyl transferase CH59_2967 PF00535 Glycosyl transferase family 2 CH59_2968 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH59_2968 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH59_2968 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH59_2968 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH59_2969 PF02706 Chain length determinant protein CH59_297 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CH59_297 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH59_2970 PF00294 pfkB family carbohydrate kinase CH59_2971 PF00999 Sodium/hydrogen exchanger family CH59_2971 PF02254 TrkA-N domain CH59_2972 PF07690 Major Facilitator Superfamily CH59_2973 PF00149 Calcineurin-like phosphoesterase CH59_2973 PF02872 5'-nucleotidase, C-terminal domain CH59_2974 PF02872 5'-nucleotidase, C-terminal domain CH59_2974 PF00149 Calcineurin-like phosphoesterase CH59_2975 PF02872 5'-nucleotidase, C-terminal domain CH59_2975 PF00149 Calcineurin-like phosphoesterase CH59_2978 PF04073 Aminoacyl-tRNA editing domain CH59_2979 PF01963 TraB family CH59_298 PF00483 Nucleotidyl transferase CH59_2980 PF00403 Heavy-metal-associated domain CH59_2981 PF13411 MerR HTH family regulatory protein CH59_2982 PF01957 NfeD-like C-terminal, partner-binding CH59_2983 PF01145 SPFH domain / Band 7 family CH59_2983 PF16200 C-terminal region of band_7 CH59_2984 PF00085 Thioredoxin CH59_2985 PF00106 short chain dehydrogenase CH59_2986 PF13472 GDSL-like Lipase/Acylhydrolase family CH59_2987 PF00005 ABC transporter CH59_2989 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CH59_2989 PF02222 ATP-grasp domain CH59_299 PF00483 Nucleotidyl transferase CH59_2990 PF00731 AIR carboxylase CH59_2991 PF00149 Calcineurin-like phosphoesterase CH59_2992 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH59_2993 PF09190 DALR domain CH59_2993 PF01406 tRNA synthetases class I (C) catalytic domain CH59_2995 PF01797 Transposase IS200 like CH59_2996 PF01797 Transposase IS200 like CH59_2997 PF00308 Bacterial dnaA protein CH59_2998 PF03960 ArsC family CH59_2999 PF01435 Peptidase family M48 CH59_2999 PF07720 Tetratricopeptide repeat CH59_3 PF00248 Aldo/keto reductase family CH59_30 PF00111 2Fe-2S iron-sulfur cluster binding domain CH59_30 PF00970 Oxidoreductase FAD-binding domain CH59_30 PF00175 Oxidoreductase NAD-binding domain CH59_300 PF06276 Ferric iron reductase FhuF-like transporter CH59_300 PF04183 IucA / IucC family CH59_3000 PF01594 AI-2E family transporter CH59_3003 PF00578 AhpC/TSA family CH59_3004 PF01842 ACT domain CH59_3005 PF00701 Dihydrodipicolinate synthetase family CH59_3006 PF06804 NlpB/DapX lipoprotein CH59_3007 PF01797 Transposase IS200 like CH59_3008 PF01259 SAICAR synthetase CH59_3009 PF04228 Putative neutral zinc metallopeptidase CH59_301 PF07715 TonB-dependent Receptor Plug Domain CH59_301 PF07660 Secretin and TonB N terminus short domain CH59_301 PF00593 TonB dependent receptor CH59_3010 PF04284 Protein of unknown function (DUF441) CH59_3011 PF17176 tRNA-binding domain CH59_3011 PF05127 Helicase CH59_3011 PF13718 GNAT acetyltransferase 2 CH59_3011 PF08351 Domain of unknown function (DUF1726) CH59_3012 PF13980 Uncharacterised protein family (UPF0370) CH59_3013 PF02557 D-alanyl-D-alanine carboxypeptidase CH59_3014 PF01546 Peptidase family M20/M25/M40 CH59_3014 PF07687 Peptidase dimerisation domain CH59_3015 PF03960 ArsC family CH59_3017 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH59_3017 PF01367 5'-3' exonuclease, C-terminal SAM fold CH59_3018 PF02796 Helix-turn-helix domain of resolvase CH59_3018 PF00665 Integrase core domain CH59_3019 PF01695 IstB-like ATP binding protein CH59_302 PF01497 Periplasmic binding protein CH59_3021 PF00528 Binding-protein-dependent transport system inner membrane component CH59_3022 PF00005 ABC transporter CH59_3022 PF08402 TOBE domain CH59_3023 PF00884 Sulfatase CH59_3024 PF13186 Iron-sulfur cluster-binding domain CH59_3024 PF04055 Radical SAM superfamily CH59_3025 PF04307 LexA-binding, inner membrane-associated putative hydrolase CH59_3027 PF00873 AcrB/AcrD/AcrF family CH59_3029 PF00196 Bacterial regulatory proteins, luxR family CH59_3029 PF00072 Response regulator receiver domain CH59_303 PF01032 FecCD transport family CH59_3030 PF00037 4Fe-4S binding domain CH59_3030 PF12800 4Fe-4S binding domain CH59_3030 PF13187 4Fe-4S dicluster domain CH59_3031 PF03927 NapD protein CH59_3032 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH59_3032 PF00384 Molybdopterin oxidoreductase CH59_3032 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH59_3032 PF01568 Molydopterin dinucleotide binding domain CH59_3033 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CH59_3034 PF03264 NapC/NirT cytochrome c family, N-terminal region CH59_3035 PF00293 NUDIX domain CH59_3036 PF01515 Phosphate acetyl/butaryl transferase CH59_3036 PF03949 Malic enzyme, NAD binding domain CH59_3036 PF00390 Malic enzyme, N-terminal domain CH59_3037 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CH59_3038 PF01218 Coproporphyrinogen III oxidase CH59_3039 PF00583 Acetyltransferase (GNAT) family CH59_304 PF01032 FecCD transport family CH59_3042 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH59_3042 PF03797 Autotransporter beta-domain CH59_3042 PF13018 Extended Signal Peptide of Type V secretion system CH59_3042 PF03212 Pertactin CH59_3043 PF04076 Bacterial OB fold (BOF) protein CH59_3044 PF06572 Protein of unknown function (DUF1131) CH59_3045 PF04261 Dyp-type peroxidase family CH59_3046 PF00701 Dihydrodipicolinate synthetase family CH59_3047 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CH59_3048 PF12468 Type III secretion system leucine rich repeat protein CH59_3049 PF00480 ROK family CH59_305 PF00005 ABC transporter CH59_3050 PF04074 YhcH/YjgK/YiaL CH59_3051 PF01380 SIS domain CH59_3051 PF01418 Helix-turn-helix domain, rpiR family CH59_3052 PF07690 Major Facilitator Superfamily CH59_3054 PF00528 Binding-protein-dependent transport system inner membrane component CH59_3055 PF00528 Binding-protein-dependent transport system inner membrane component CH59_3056 PF00005 ABC transporter CH59_3057 PF00291 Pyridoxal-phosphate dependent enzyme CH59_3059 PF00486 Transcriptional regulatory protein, C terminal CH59_3059 PF00072 Response regulator receiver domain CH59_306 PF06276 Ferric iron reductase FhuF-like transporter CH59_306 PF04183 IucA / IucC family CH59_3060 PF00512 His Kinase A (phospho-acceptor) domain CH59_3060 PF00672 HAMP domain CH59_3060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_3062 PF00155 Aminotransferase class I and II CH59_3064 PF05195 Aminopeptidase P, N-terminal domain CH59_3064 PF00557 Metallopeptidase family M24 CH59_3066 PF00474 Sodium:solute symporter family CH59_3067 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH59_3067 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH59_3068 PF02687 FtsX-like permease family CH59_3068 PF12704 MacB-like periplasmic core domain CH59_3068 PF00005 ABC transporter CH59_3069 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH59_3070 PF00486 Transcriptional regulatory protein, C terminal CH59_3070 PF00072 Response regulator receiver domain CH59_3071 PF00512 His Kinase A (phospho-acceptor) domain CH59_3071 PF16527 Two-component sensor protein CpxA, periplasmic domain CH59_3071 PF00672 HAMP domain CH59_3071 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_3073 PF01797 Transposase IS200 like CH59_3074 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH59_3075 PF00391 PEP-utilising enzyme, mobile domain CH59_3075 PF02896 PEP-utilising enzyme, TIM barrel domain CH59_3075 PF05524 PEP-utilising enzyme, N-terminal CH59_3076 PF00381 PTS HPr component phosphorylation site CH59_3077 PF00291 Pyridoxal-phosphate dependent enzyme CH59_3079 PF04354 ZipA, C-terminal FtsZ-binding domain CH59_308 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CH59_3080 PF03120 NAD-dependent DNA ligase OB-fold domain CH59_3080 PF00533 BRCA1 C Terminus (BRCT) domain CH59_3080 PF12826 Helix-hairpin-helix motif CH59_3080 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CH59_3080 PF01653 NAD-dependent DNA ligase adenylation domain CH59_3081 PF12843 Putative quorum-sensing-regulated virulence factor CH59_3087 PF01797 Transposase IS200 like CH59_3088 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH59_309 PF00282 Pyridoxal-dependent decarboxylase conserved domain CH59_3093 PF07662 Na+ dependent nucleoside transporter C-terminus CH59_3093 PF01773 Na+ dependent nucleoside transporter N-terminus CH59_3093 PF07670 Nucleoside recognition CH59_3094 PF01566 Natural resistance-associated macrophage protein CH59_3096 PF00248 Aldo/keto reductase family CH59_3097 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_3097 PF03466 LysR substrate binding domain CH59_3099 PF02685 Glucokinase CH59_31 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CH59_31 PF00355 Rieske [2Fe-2S] domain CH59_310 PF06276 Ferric iron reductase FhuF-like transporter CH59_310 PF11575 FhuF 2Fe-2S C-terminal domain CH59_3100 PF07350 Protein of unknown function (DUF1479) CH59_3101 PF00155 Aminotransferase class I and II CH59_3102 PF01292 Prokaryotic cytochrome b561 CH59_3104 PF03783 Curli production assembly/transport component CsgG CH59_3106 PF05643 Putative bacterial lipoprotein (DUF799) CH59_3108 PF02613 Nitrate reductase delta subunit CH59_3109 PF04976 DMSO reductase anchor subunit (DmsC) CH59_311 PF00571 CBS domain CH59_311 PF03471 Transporter associated domain CH59_311 PF03741 Integral membrane protein TerC family CH59_3110 PF12800 4Fe-4S binding domain CH59_3110 PF13247 4Fe-4S dicluster domain CH59_3111 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH59_3111 PF00384 Molybdopterin oxidoreductase CH59_3111 PF01568 Molydopterin dinucleotide binding domain CH59_3113 PF05638 Type VI secretion system effector, Hcp CH59_3115 PF00005 ABC transporter CH59_3116 PF00528 Binding-protein-dependent transport system inner membrane component CH59_3118 PF13406 Transglycosylase SLT domain CH59_312 PF05170 AsmA family CH59_3128 PF00004 ATPase family associated with various cellular activities (AAA) CH59_3128 PF17871 AAA lid domain CH59_3128 PF07724 AAA domain (Cdc48 subfamily) CH59_3128 PF10431 C-terminal, D2-small domain, of ClpB protein CH59_3129 PF16970 Type-1 fimbrial protein, A CH59_313 PF00692 dUTPase CH59_3130 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH59_3130 PF02753 Pili assembly chaperone PapD, C-terminal domain CH59_3131 PF13953 PapC C-terminal domain CH59_3131 PF00577 Outer membrane usher protein CH59_3131 PF13954 PapC N-terminal domain CH59_3132 PF00872 Transposase, Mutator family CH59_3133 PF13953 PapC C-terminal domain CH59_3133 PF13954 PapC N-terminal domain CH59_3133 PF00577 Outer membrane usher protein CH59_314 PF00485 Phosphoribulokinase / Uridine kinase family CH59_3141 PF02796 Helix-turn-helix domain of resolvase CH59_3141 PF00665 Integrase core domain CH59_3142 PF01695 IstB-like ATP binding protein CH59_3143 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CH59_3144 PF01648 4'-phosphopantetheinyl transferase superfamily CH59_3145 PF01797 Transposase IS200 like CH59_3146 PF12838 4Fe-4S dicluster domain CH59_3147 PF01418 Helix-turn-helix domain, rpiR family CH59_3147 PF01380 SIS domain CH59_3148 PF01380 SIS domain CH59_315 PF10609 NUBPL iron-transfer P-loop NTPase CH59_3150 PF14437 MafB19-like deaminase CH59_3151 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH59_3151 PF01464 Transglycosylase SLT domain CH59_3152 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CH59_3152 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CH59_3152 PF02769 AIR synthase related protein, C-terminal domain CH59_3156 PF01797 Transposase IS200 like CH59_3157 PF01797 Transposase IS200 like CH59_3158 PF00512 His Kinase A (phospho-acceptor) domain CH59_3158 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_3159 PF13942 YfhG lipoprotein CH59_316 PF09334 tRNA synthetases class I (M) CH59_316 PF01588 Putative tRNA binding domain CH59_3160 PF00158 Sigma-54 interaction domain CH59_3160 PF00072 Response regulator receiver domain CH59_3161 PF00795 Carbon-nitrogen hydrolase CH59_3161 PF02540 NAD synthase CH59_3162 PF00543 Nitrogen regulatory protein P-II CH59_3165 PF00970 Oxidoreductase FAD-binding domain CH59_3165 PF00042 Globin CH59_3165 PF00175 Oxidoreductase NAD-binding domain CH59_3166 PF00464 Serine hydroxymethyltransferase CH59_3167 PF13505 Outer membrane protein beta-barrel domain CH59_3168 PF00874 PRD domain CH59_3169 PF12832 MFS_1 like family CH59_317 PF01797 Transposase IS200 like CH59_3170 PF06226 Protein of unknown function (DUF1007) CH59_3171 PF03824 High-affinity nickel-transport protein CH59_3172 PF01797 Transposase IS200 like CH59_3173 PF00459 Inositol monophosphatase family CH59_3174 PF00588 SpoU rRNA Methylase family CH59_3175 PF02082 Transcriptional regulator CH59_3176 PF00266 Aminotransferase class-V CH59_3177 PF01592 NifU-like N terminal domain CH59_3178 PF01521 Iron-sulphur cluster biosynthesis CH59_3179 PF00226 DnaJ domain CH59_3179 PF07743 HSCB C-terminal oligomerisation domain CH59_318 PF00665 Integrase core domain CH59_318 PF02796 Helix-turn-helix domain of resolvase CH59_3180 PF00012 Hsp70 protein CH59_3181 PF00111 2Fe-2S iron-sulfur cluster binding domain CH59_3182 PF04384 Iron-sulphur cluster assembly CH59_3183 PF00883 Cytosol aminopeptidase family, catalytic domain CH59_3183 PF12404 Peptidase CH59_3184 PF07179 SseB protein N-terminal domain CH59_3184 PF14581 SseB protein C-terminal domain CH59_3186 PF03797 Autotransporter beta-domain CH59_3186 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH59_3186 PF03212 Pertactin CH59_3187 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH59_3187 PF03797 Autotransporter beta-domain CH59_3187 PF03212 Pertactin CH59_3189 PF00334 Nucleoside diphosphate kinase CH59_319 PF01695 IstB-like ATP binding protein CH59_3190 PF04055 Radical SAM superfamily CH59_3192 PF13464 Domain of unknown function (DUF4115) CH59_3193 PF04551 GcpE protein CH59_3194 PF03129 Anticodon binding domain CH59_3194 PF13393 Histidyl-tRNA synthetase CH59_3195 PF09976 Tetratricopeptide repeat-like domain CH59_3196 PF13360 PQQ-like domain CH59_3197 PF01926 50S ribosome-binding GTPase CH59_3197 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CH59_3199 PF07191 zinc-ribbons CH59_32 PF02028 BCCT, betaine/carnitine/choline family transporter CH59_3200 PF02601 Exonuclease VII, large subunit CH59_3200 PF13742 OB-fold nucleic acid binding domain CH59_3201 PF00571 CBS domain CH59_3201 PF00478 IMP dehydrogenase / GMP reductase domain CH59_3202 PF00117 Glutamine amidotransferase class-I CH59_3202 PF00958 GMP synthase C terminal domain CH59_3202 PF02540 NAD synthase CH59_3203 PF01797 Transposase IS200 like CH59_3204 PF05638 Type VI secretion system effector, Hcp CH59_3210 PF00872 Transposase, Mutator family CH59_3213 PF08543 Phosphomethylpyrimidine kinase CH59_3217 PF00781 Diacylglycerol kinase catalytic domain CH59_3219 PF07411 Domain of unknown function (DUF1508) CH59_3220 PF00486 Transcriptional regulatory protein, C terminal CH59_3220 PF00072 Response regulator receiver domain CH59_3221 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_3221 PF00672 HAMP domain CH59_3221 PF00512 His Kinase A (phospho-acceptor) domain CH59_3222 PF07690 Major Facilitator Superfamily CH59_3223 PF00873 AcrB/AcrD/AcrF family CH59_3224 PF00873 AcrB/AcrD/AcrF family CH59_3225 PF13533 Biotin-lipoyl like CH59_3226 PF00005 ABC transporter CH59_3226 PF08402 TOBE domain CH59_3227 PF00392 Bacterial regulatory proteins, gntR family CH59_3227 PF00155 Aminotransferase class I and II CH59_3228 PF00202 Aminotransferase class-III CH59_323 PF07690 Major Facilitator Superfamily CH59_3230 PF00528 Binding-protein-dependent transport system inner membrane component CH59_3231 PF00528 Binding-protein-dependent transport system inner membrane component CH59_3232 PF00012 Hsp70 protein CH59_3233 PF03448 MgtE intracellular N domain CH59_3233 PF01769 Divalent cation transporter CH59_3233 PF00571 CBS domain CH59_3234 PF02541 Ppx/GppA phosphatase family CH59_3235 PF02503 Polyphosphate kinase middle domain CH59_3235 PF13090 Polyphosphate kinase C-terminal domain 2 CH59_3235 PF17941 Polyphosphate kinase C-terminal domain 1 CH59_3235 PF13089 Polyphosphate kinase N-terminal domain CH59_3236 PF00528 Binding-protein-dependent transport system inner membrane component CH59_3237 PF00528 Binding-protein-dependent transport system inner membrane component CH59_3238 PF00005 ABC transporter CH59_324 PF03788 LrgA family CH59_3241 PF13302 Acetyltransferase (GNAT) domain CH59_3242 PF00551 Formyl transferase CH59_3243 PF02769 AIR synthase related protein, C-terminal domain CH59_3243 PF00586 AIR synthase related protein, N-terminal domain CH59_3245 PF01797 Transposase IS200 like CH59_3247 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CH59_3247 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CH59_325 PF04172 LrgB-like family CH59_3254 PF01066 CDP-alcohol phosphatidyltransferase CH59_3256 PF01553 Acyltransferase CH59_3257 PF12147 Putative methyltransferase CH59_3257 PF12146 Serine aminopeptidase, S33 CH59_3258 PF00782 Dual specificity phosphatase, catalytic domain CH59_326 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CH59_326 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH59_3261 PF01695 IstB-like ATP binding protein CH59_3262 PF00665 Integrase core domain CH59_3262 PF02796 Helix-turn-helix domain of resolvase CH59_3265 PF00005 ABC transporter CH59_3265 PF08402 TOBE domain CH59_3266 PF00528 Binding-protein-dependent transport system inner membrane component CH59_3267 PF00528 Binding-protein-dependent transport system inner membrane component CH59_3269 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH59_3269 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH59_327 PF03949 Malic enzyme, NAD binding domain CH59_327 PF00390 Malic enzyme, N-terminal domain CH59_3276 PF00872 Transposase, Mutator family CH59_3277 PF00872 Transposase, Mutator family CH59_328 PF02698 DUF218 domain CH59_3289 PF05638 Type VI secretion system effector, Hcp CH59_329 PF02653 Branched-chain amino acid transport system / permease component CH59_3299 PF01066 CDP-alcohol phosphatidyltransferase CH59_33 PF00180 Isocitrate/isopropylmalate dehydrogenase CH59_330 PF00005 ABC transporter CH59_3300 PF02151 UvrB/uvrC motif CH59_3300 PF01541 GIY-YIG catalytic domain CH59_3300 PF08459 UvrC Helix-hairpin-helix N-terminal CH59_3301 PF00072 Response regulator receiver domain CH59_3301 PF00196 Bacterial regulatory proteins, luxR family CH59_3302 PF10769 Protein of unknown function (DUF2594) CH59_3303 PF06942 GlpM protein CH59_3305 PF13505 Outer membrane protein beta-barrel domain CH59_3307 PF00324 Amino acid permease CH59_3308 PF01344 Kelch motif CH59_3309 PF03358 NADPH-dependent FMN reductase CH59_331 PF13407 Periplasmic binding protein domain CH59_3310 PF04261 Dyp-type peroxidase family CH59_3311 PF13473 Cupredoxin-like domain CH59_3311 PF09375 Imelysin CH59_3312 PF03239 Iron permease FTR1 family CH59_3313 PF00474 Sodium:solute symporter family CH59_3315 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CH59_3315 PF01619 Proline dehydrogenase CH59_3315 PF14850 DNA-binding domain of Proline dehydrogenase CH59_3315 PF00171 Aldehyde dehydrogenase family CH59_332 PF04235 Protein of unknown function (DUF418) CH59_3321 PF00291 Pyridoxal-phosphate dependent enzyme CH59_3322 PF02899 Phage integrase, N-terminal SAM-like domain CH59_3323 PF04545 Sigma-70, region 4 CH59_3323 PF04539 Sigma-70 region 3 CH59_3323 PF04542 Sigma-70 region 2 CH59_3324 PF00700 Bacterial flagellin C-terminal helical region CH59_3324 PF00669 Bacterial flagellin N-terminal helical region CH59_3324 PF08884 Flagellin D3 domain CH59_3325 PF02465 Flagellar hook-associated protein 2 N-terminus CH59_3325 PF07195 Flagellar hook-associated protein 2 C-terminus CH59_3325 PF07196 Flagellin hook IN motif CH59_3326 PF02561 Flagellar protein FliS CH59_3327 PF05400 Flagellar protein FliT CH59_3328 PF12833 Helix-turn-helix domain CH59_3329 PF02743 Cache domain CH59_3329 PF00211 Adenylate and Guanylate cyclase catalytic domain CH59_3329 PF00672 HAMP domain CH59_333 PF01227 GTP cyclohydrolase I CH59_3330 PF01966 HD domain CH59_3331 PF00730 HhH-GPD superfamily base excision DNA repair protein CH59_3334 PF02049 Flagellar hook-basal body complex protein FliE CH59_3335 PF08345 Flagellar M-ring protein C-terminal CH59_3335 PF01514 Secretory protein of YscJ/FliF family CH59_3336 PF14842 FliG N-terminal domain CH59_3336 PF14841 FliG middle domain CH59_3336 PF01706 FliG C-terminal domain CH59_3337 PF02108 Flagellar assembly protein FliH CH59_3338 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH59_3338 PF18269 T3SS EscN ATPase C-terminal domain CH59_3339 PF02050 Flagellar FliJ protein CH59_334 PF06779 Uncharacterised MFS-type transporter YbfB CH59_3340 PF02120 Flagellar hook-length control protein FliK CH59_3341 PF03748 Flagellar basal body-associated protein FliL CH59_3342 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH59_3342 PF02154 Flagellar motor switch protein FliM CH59_3343 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH59_3343 PF16973 Flagellar motor switch protein FliN N-terminal CH59_3344 PF04347 Flagellar biosynthesis protein, FliO CH59_3345 PF00813 FliP family CH59_3346 PF01313 Bacterial export proteins, family 3 CH59_3347 PF01311 Bacterial export proteins, family 1 CH59_335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_335 PF03466 LysR substrate binding domain CH59_3350 PF00294 pfkB family carbohydrate kinase CH59_3351 PF02653 Branched-chain amino acid transport system / permease component CH59_3352 PF00005 ABC transporter CH59_3353 PF13407 Periplasmic binding protein domain CH59_3354 PF02653 Branched-chain amino acid transport system / permease component CH59_3355 PF00596 Class II Aldolase and Adducin N-terminal domain CH59_3356 PF04198 Putative sugar-binding domain CH59_3357 PF00669 Bacterial flagellin N-terminal helical region CH59_3358 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH59_3358 PF00460 Flagella basal body rod protein CH59_3359 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CH59_3359 PF10135 Rod binding protein CH59_336 PF08240 Alcohol dehydrogenase GroES-like domain CH59_336 PF00107 Zinc-binding dehydrogenase CH59_3360 PF02119 Flagellar P-ring protein CH59_3361 PF02107 Flagellar L-ring protein CH59_3362 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH59_3362 PF00460 Flagella basal body rod protein CH59_3363 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH59_3363 PF00460 Flagella basal body rod protein CH59_3364 PF00460 Flagella basal body rod protein CH59_3364 PF07559 Flagellar basal body protein FlaE CH59_3364 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH59_3365 PF13861 FlgD Tudor-like domain CH59_3365 PF13860 FlgD Ig-like domain CH59_3365 PF03963 Flagellar hook capping protein - N-terminal region CH59_3366 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH59_3366 PF00460 Flagella basal body rod protein CH59_3367 PF00460 Flagella basal body rod protein CH59_3368 PF17656 FlgA N-terminal domain CH59_3368 PF13144 Chaperone for flagella basal body P-ring formation CH59_3369 PF04316 Anti-sigma-28 factor, FlgM CH59_337 PF00756 Putative esterase CH59_3370 PF05130 FlgN protein CH59_3371 PF11924 Inverse autotransporter, beta-domain CH59_3371 PF07979 Intimin C-type lectin domain CH59_3371 PF09134 Invasin, domain 3 CH59_3371 PF02369 Bacterial Ig-like domain (group 1) CH59_3372 PF01797 Transposase IS200 like CH59_3373 PF11924 Inverse autotransporter, beta-domain CH59_3373 PF09134 Invasin, domain 3 CH59_3373 PF02369 Bacterial Ig-like domain (group 1) CH59_3373 PF07979 Intimin C-type lectin domain CH59_3374 PF06366 Flagellar protein FlhE CH59_3375 PF00771 FHIPEP family CH59_3376 PF01312 FlhB HrpN YscU SpaS Family CH59_3377 PF00665 Integrase core domain CH59_3377 PF02796 Helix-turn-helix domain of resolvase CH59_3378 PF01695 IstB-like ATP binding protein CH59_3381 PF10709 Protein of unknown function (DUF2511) CH59_3383 PF04234 CopC domain CH59_3384 PF00210 Ferritin-like domain CH59_3385 PF06440 DNA polymerase III, theta subunit CH59_3386 PF00561 alpha/beta hydrolase fold CH59_3387 PF00326 Prolyl oligopeptidase family CH59_3387 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CH59_3388 PF13995 YebF-like protein CH59_3390 PF07130 YebG protein CH59_3391 PF00270 DEAD/DEAH box helicase CH59_3391 PF03880 DbpA RNA binding domain CH59_3391 PF00271 Helicase conserved C-terminal domain CH59_3392 PF02222 ATP-grasp domain CH59_3393 PF03701 Uncharacterised protein family (UPF0181) CH59_3394 PF00425 chorismate binding enzyme CH59_3394 PF04715 Anthranilate synthase component I, N terminal region CH59_3395 PF00293 NUDIX domain CH59_3396 PF03313 Serine dehydratase alpha chain CH59_3396 PF03315 Serine dehydratase beta chain CH59_3397 PF01613 Flavin reductase like domain CH59_3398 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal CH59_3398 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal CH59_3399 PF07690 Major Facilitator Superfamily CH59_34 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_34 PF03466 LysR substrate binding domain CH59_340 PF13533 Biotin-lipoyl like CH59_3400 PF03328 HpcH/HpaI aldolase/citrate lyase family CH59_3401 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH59_3402 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase CH59_3403 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH59_3404 PF00171 Aldehyde dehydrogenase family CH59_3405 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH59_3406 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH59_3407 PF01047 MarR family CH59_3408 PF03741 Integral membrane protein TerC family CH59_3408 PF03471 Transporter associated domain CH59_3409 PF03830 PTS system sorbose subfamily IIB component CH59_3409 PF03610 PTS system fructose IIA component CH59_341 PF00005 ABC transporter CH59_3410 PF03609 PTS system sorbose-specific iic component CH59_3411 PF03613 PTS system mannose/fructose/sorbose family IID component CH59_3412 PF06173 Protein of unknown function (DUF986) CH59_3413 PF02659 Putative manganese efflux pump CH59_3414 PF00593 TonB dependent receptor CH59_3414 PF07715 TonB-dependent Receptor Plug Domain CH59_3415 PF13426 PAS domain CH59_3415 PF05231 MASE1 CH59_3415 PF00990 Diguanylate cyclase, GGDEF domain CH59_3415 PF00563 EAL domain CH59_3415 PF08448 PAS fold CH59_3415 PF08447 PAS fold CH59_3417 PF13847 Methyltransferase domain CH59_3419 PF00313 'Cold-shock' DNA-binding domain CH59_3421 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP CH59_3422 PF00324 Amino acid permease CH59_3425 PF13974 YebO-like protein CH59_3426 PF13996 YobH-like protein CH59_3427 PF10964 Protein of unknown function (DUF2766) CH59_3429 PF12833 Helix-turn-helix domain CH59_343 PF00994 Probable molybdopterin binding domain CH59_343 PF03454 MoeA C-terminal region (domain IV) CH59_343 PF03453 MoeA N-terminal region (domain I and II) CH59_3431 PF00664 ABC transporter transmembrane region CH59_3431 PF00005 ABC transporter CH59_3434 PF06167 Glucose-regulated metallo-peptidase M90 CH59_3436 PF00356 Bacterial regulatory proteins, lacI family CH59_3436 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH59_3437 PF01695 IstB-like ATP binding protein CH59_3439 PF00665 Integrase core domain CH59_3439 PF02796 Helix-turn-helix domain of resolvase CH59_344 PF00899 ThiF family CH59_3440 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH59_3440 PF00356 Bacterial regulatory proteins, lacI family CH59_3441 PF00872 Transposase, Mutator family CH59_3442 PF00912 Transglycosylase CH59_3442 PF00905 Penicillin binding protein transpeptidase domain CH59_3442 PF06832 Penicillin-Binding Protein C-terminus Family CH59_3443 PF07703 Alpha-2-macroglobulin bait region domain CH59_3443 PF01835 MG2 domain CH59_3443 PF17962 Bacterial macroglobulin domain 6 CH59_3443 PF00207 Alpha-2-macroglobulin family CH59_3443 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CH59_3443 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CH59_3443 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CH59_3448 PF00171 Aldehyde dehydrogenase family CH59_3449 PF00205 Thiamine pyrophosphate enzyme, central domain CH59_3449 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH59_3449 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH59_345 PF00872 Transposase, Mutator family CH59_3450 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH59_3450 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH59_3451 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH59_3451 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH59_3452 PF13407 Periplasmic binding protein domain CH59_3455 PF02653 Branched-chain amino acid transport system / permease component CH59_3456 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH59_3456 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH59_3457 PF00294 pfkB family carbohydrate kinase CH59_3458 PF01261 Xylose isomerase-like TIM barrel CH59_3459 PF04962 KduI/IolB family CH59_3461 PF00664 ABC transporter transmembrane region CH59_3461 PF00005 ABC transporter CH59_3466 PF00196 Bacterial regulatory proteins, luxR family CH59_3468 PF00313 'Cold-shock' DNA-binding domain CH59_3469 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH59_347 PF00005 ABC transporter CH59_347 PF12848 ABC transporter CH59_3470 PF02416 mttA/Hcf106 family CH59_3471 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CH59_3471 PF04055 Radical SAM superfamily CH59_3472 PF03099 Biotin/lipoate A/B protein ligase family CH59_3473 PF04359 Protein of unknown function (DUF493) CH59_3474 PF07943 Penicillin-binding protein 5, C-terminal domain CH59_3474 PF00768 D-alanyl-D-alanine carboxypeptidase CH59_3475 PF05036 Sporulation related domain CH59_3475 PF03330 Lytic transglycolase CH59_3476 PF01098 Cell cycle protein CH59_3477 PF00905 Penicillin binding protein transpeptidase domain CH59_3477 PF03717 Penicillin-binding Protein dimerisation domain CH59_3478 PF02590 Predicted SPOUT methyltransferase CH59_3480 PF01467 Cytidylyltransferase-like CH59_3481 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CH59_3481 PF06144 DNA polymerase III, delta subunit CH59_3482 PF04390 Lipopolysaccharide-assembly CH59_3483 PF08264 Anticodon-binding domain of tRNA CH59_3483 PF00133 tRNA synthetases class I (I, L, M and V) CH59_3483 PF13603 Leucyl-tRNA synthetase, Domain 2 CH59_3484 PF07295 Zinc-ribbon containing domain CH59_3485 PF00005 ABC transporter CH59_3486 PF00528 Binding-protein-dependent transport system inner membrane component CH59_3487 PF00528 Binding-protein-dependent transport system inner membrane component CH59_3488 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH59_3489 PF00795 Carbon-nitrogen hydrolase CH59_3490 PF03471 Transporter associated domain CH59_3490 PF00571 CBS domain CH59_3491 PF02130 Uncharacterized protein family UPF0054 CH59_3492 PF02562 PhoH-like protein CH59_3493 PF04055 Radical SAM superfamily CH59_3493 PF00919 Uncharacterized protein family UPF0004 CH59_3493 PF01938 TRAM domain CH59_3494 PF01494 FAD binding domain CH59_35 PF00356 Bacterial regulatory proteins, lacI family CH59_3500 PF13537 Glutamine amidotransferase domain CH59_3500 PF00733 Asparagine synthase CH59_3501 PF13344 Haloacid dehalogenase-like hydrolase CH59_3502 PF01047 MarR family CH59_3502 PF00480 ROK family CH59_3503 PF01979 Amidohydrolase family CH59_3504 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CH59_3505 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH59_3505 PF00367 phosphotransferase system, EIIB CH59_3505 PF02378 Phosphotransferase system, EIIC CH59_3506 PF01797 Transposase IS200 like CH59_3508 PF01797 Transposase IS200 like CH59_3509 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CH59_3509 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH59_3510 PF03573 outer membrane porin, OprD family CH59_3511 PF00728 Glycosyl hydrolase family 20, catalytic domain CH59_3511 PF03173 Putative carbohydrate binding domain CH59_3511 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CH59_3511 PF02838 Glycosyl hydrolase family 20, domain 2 CH59_3512 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CH59_3512 PF03173 Putative carbohydrate binding domain CH59_3512 PF02838 Glycosyl hydrolase family 20, domain 2 CH59_3512 PF00728 Glycosyl hydrolase family 20, catalytic domain CH59_3513 PF01475 Ferric uptake regulator family CH59_3514 PF00258 Flavodoxin CH59_3515 PF01402 Ribbon-helix-helix protein, copG family CH59_3517 PF12697 Alpha/beta hydrolase family CH59_3519 PF01527 Transposase CH59_3520 PF13356 Arm DNA-binding domain CH59_3520 PF00589 Phage integrase family CH59_3521 PF01695 IstB-like ATP binding protein CH59_3522 PF00665 Integrase core domain CH59_3522 PF02796 Helix-turn-helix domain of resolvase CH59_3524 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH59_3525 PF00528 Binding-protein-dependent transport system inner membrane component CH59_3526 PF00571 CBS domain CH59_3526 PF00005 ABC transporter CH59_3527 PF00268 Ribonucleotide reductase, small chain CH59_3528 PF08343 Ribonucleotide reductase N-terminal CH59_3528 PF02867 Ribonucleotide reductase, barrel domain CH59_3528 PF00317 Ribonucleotide reductase, all-alpha domain CH59_3529 PF07972 NrdI Flavodoxin like CH59_3531 PF06392 Acid shock protein repeat CH59_3532 PF09400 Protein of unknown function (DUF2002) CH59_3533 PF06711 Protein of unknown function (DUF1198) CH59_3535 PF00872 Transposase, Mutator family CH59_3536 PF00872 Transposase, Mutator family CH59_3538 PF00313 'Cold-shock' DNA-binding domain CH59_3539 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH59_3540 PF00528 Binding-protein-dependent transport system inner membrane component CH59_3541 PF00528 Binding-protein-dependent transport system inner membrane component CH59_3541 PF12911 N-terminal TM domain of oligopeptide transport permease C CH59_3542 PF00005 ABC transporter CH59_3543 PF00005 ABC transporter CH59_3545 PF00547 Urease, gamma subunit CH59_3546 PF00699 Urease beta subunit CH59_3547 PF01979 Amidohydrolase family CH59_3547 PF00449 Urease alpha-subunit, N-terminal domain CH59_3548 PF02814 UreE urease accessory protein, N-terminal domain CH59_3548 PF05194 UreE urease accessory protein, C-terminal domain CH59_3549 PF01730 UreF CH59_3550 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH59_3551 PF01774 UreD urease accessory protein CH59_3552 PF03253 Urea transporter CH59_3553 PF03824 High-affinity nickel-transport protein CH59_3554 PF06411 HdeA/HdeB family CH59_3555 PF07885 Ion channel CH59_3555 PF02254 TrkA-N domain CH59_3556 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH59_3557 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH59_3558 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH59_3559 PF02378 Phosphotransferase system, EIIC CH59_3560 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH59_3561 PF12833 Helix-turn-helix domain CH59_3561 PF07883 Cupin domain CH59_3562 PF04794 YdjC-like protein CH59_3565 PF17206 SeqA protein N-terminal domain CH59_3565 PF03925 SeqA protein C-terminal domain CH59_3566 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH59_3566 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH59_3566 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH59_3566 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH59_3570 PF00486 Transcriptional regulatory protein, C terminal CH59_3570 PF00072 Response regulator receiver domain CH59_3571 PF13493 Domain of unknown function (DUF4118) CH59_3571 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_3571 PF13492 GAF domain CH59_3571 PF02702 Osmosensitive K+ channel His kinase sensor domain CH59_3571 PF00512 His Kinase A (phospho-acceptor) domain CH59_3572 PF02669 K+-transporting ATPase, c chain CH59_3574 PF03814 Potassium-transporting ATPase A subunit CH59_3575 PF10725 Protein of unknown function (DUF2517) CH59_3576 PF08349 Protein of unknown function (DUF1722) CH59_3577 PF00875 DNA photolyase CH59_3577 PF03441 FAD binding domain of DNA photolyase CH59_3578 PF02112 cAMP phosphodiesterases class-II CH59_3579 PF01784 NIF3 (NGG1p interacting factor 3) CH59_3581 PF02682 Carboxyltransferase domain, subdomain C and D CH59_3582 PF02626 Carboxyltransferase domain, subdomain A and B CH59_3583 PF03746 LamB/YcsF family CH59_3586 PF01470 Pyroglutamyl peptidase CH59_3587 PF03167 Uracil DNA glycosylase superfamily CH59_3588 PF01228 Glycine radical CH59_3591 PF12796 Ankyrin repeats (3 copies) CH59_3593 PF00270 DEAD/DEAH box helicase CH59_3593 PF00271 Helicase conserved C-terminal domain CH59_3594 PF05175 Methyltransferase small domain CH59_3595 PF00890 FAD binding domain CH59_3595 PF02910 Fumarate reductase flavoprotein C-term CH59_3596 PF04542 Sigma-70 region 2 CH59_3596 PF08281 Sigma-70, region 4 CH59_3597 PF03873 Anti sigma-E protein RseA, C-terminal domain CH59_3597 PF03872 Anti sigma-E protein RseA, N-terminal domain CH59_3598 PF03888 MucB/RseB N-terminal domain CH59_3598 PF17188 MucB/RseB C-terminal domain CH59_36 PF02653 Branched-chain amino acid transport system / permease component CH59_3601 PF06421 GTP-binding protein LepA C-terminus CH59_3601 PF00679 Elongation factor G C-terminus CH59_3601 PF00009 Elongation factor Tu GTP binding domain CH59_3601 PF03144 Elongation factor Tu domain 2 CH59_3602 PF10502 Signal peptidase, peptidase S26 CH59_3603 PF00035 Double-stranded RNA binding motif CH59_3603 PF14622 Ribonuclease-III-like CH59_3604 PF07650 KH domain CH59_3604 PF01926 50S ribosome-binding GTPase CH59_3605 PF11967 Recombination protein O N terminal CH59_3605 PF02565 Recombination protein O C terminal CH59_3606 PF02796 Helix-turn-helix domain of resolvase CH59_3606 PF00665 Integrase core domain CH59_3607 PF01695 IstB-like ATP binding protein CH59_3610 PF04717 Type VI secretion system, phage-baseplate injector CH59_3616 PF03831 PhnA domain CH59_3616 PF08274 PhnA Zinc-Ribbon CH59_3618 PF04011 LemA family CH59_3621 PF00005 ABC transporter CH59_3622 PF03379 CcmB protein CH59_3623 PF01578 Cytochrome C assembly protein CH59_3624 PF04995 Heme exporter protein D (CcmD) CH59_3625 PF03100 CcmE CH59_3626 PF01578 Cytochrome C assembly protein CH59_3626 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CH59_3627 PF08534 Redoxin CH59_3628 PF03918 Cytochrome C biogenesis protein CH59_3629 PF03918 Cytochrome C biogenesis protein CH59_3630 PF04333 MlaA lipoprotein CH59_3631 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CH59_3632 PF04175 Protein of unknown function (DUF406) CH59_3633 PF02803 Thiolase, C-terminal domain CH59_3633 PF00108 Thiolase, N-terminal domain CH59_3634 PF00378 Enoyl-CoA hydratase/isomerase CH59_3634 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH59_3634 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH59_3635 PF00300 Histidine phosphatase superfamily (branch 1) CH59_3636 PF01713 Smr domain CH59_3637 PF05175 Methyltransferase small domain CH59_3638 PF01264 Chorismate synthase CH59_3639 PF03411 Penicillin-insensitive murein endopeptidase CH59_3640 PF01925 Sulfite exporter TauE/SafE CH59_3641 PF04315 Elongation factor P hydroxylase CH59_3642 PF08891 YfcL protein CH59_3643 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CH59_3643 PF01266 FAD dependent oxidoreductase CH59_3644 PF02801 Beta-ketoacyl synthase, C-terminal domain CH59_3644 PF00109 Beta-ketoacyl synthase, N-terminal domain CH59_3645 PF01177 Asp/Glu/Hydantoin racemase CH59_3646 PF00419 Fimbrial protein CH59_3648 PF00892 EamA-like transporter family CH59_3650 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH59_3650 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH59_3650 PF11890 Domain of unknown function (DUF3410) CH59_3651 PF01797 Transposase IS200 like CH59_3652 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH59_3652 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH59_3653 PF01416 tRNA pseudouridine synthase CH59_3654 PF09335 SNARE associated Golgi protein CH59_3655 PF17848 Acetyl-coA carboxylase zinc finger domain CH59_3655 PF01039 Carboxyl transferase domain CH59_3656 PF02875 Mur ligase family, glutamate ligase domain CH59_3656 PF08245 Mur ligase middle domain CH59_3657 PF05036 Sporulation related domain CH59_3658 PF02674 Colicin V production protein CH59_3659 PF00156 Phosphoribosyl transferase domain CH59_366 PF00004 ATPase family associated with various cellular activities (AAA) CH59_366 PF10431 C-terminal, D2-small domain, of ClpB protein CH59_366 PF17871 AAA lid domain CH59_366 PF07724 AAA domain (Cdc48 subfamily) CH59_3660 PF02441 Flavoprotein CH59_3661 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH59_3662 PF00528 Binding-protein-dependent transport system inner membrane component CH59_3663 PF00528 Binding-protein-dependent transport system inner membrane component CH59_3664 PF00005 ABC transporter CH59_3665 PF08338 Domain of unknown function (DUF1731) CH59_3665 PF01370 NAD dependent epimerase/dehydratase family CH59_3667 PF12850 Calcineurin-like phosphoesterase superfamily domain CH59_3668 PF00293 NUDIX domain CH59_3669 PF03611 PTS system sugar-specific permease component CH59_3670 PF00872 Transposase, Mutator family CH59_3671 PF06832 Penicillin-Binding Protein C-terminus Family CH59_3671 PF00912 Transglycosylase CH59_3671 PF00905 Penicillin binding protein transpeptidase domain CH59_3672 PF13693 Winged helix-turn-helix DNA-binding CH59_3676 PF05638 Type VI secretion system effector, Hcp CH59_3679 PF03212 Pertactin CH59_3679 PF13018 Extended Signal Peptide of Type V secretion system CH59_3679 PF03797 Autotransporter beta-domain CH59_3679 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH59_368 PF05736 OprF membrane domain CH59_368 PF00691 OmpA family CH59_3681 PF08007 Cupin superfamily protein CH59_3682 PF00872 Transposase, Mutator family CH59_3687 PF00248 Aldo/keto reductase family CH59_3688 PF00248 Aldo/keto reductase family CH59_3689 PF03466 LysR substrate binding domain CH59_3689 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_3690 PF00665 Integrase core domain CH59_3690 PF02796 Helix-turn-helix domain of resolvase CH59_3692 PF01695 IstB-like ATP binding protein CH59_37 PF00005 ABC transporter CH59_3700 PF07715 TonB-dependent Receptor Plug Domain CH59_3700 PF00593 TonB dependent receptor CH59_3701 PF13193 AMP-binding enzyme C-terminal domain CH59_3701 PF00501 AMP-binding enzyme CH59_3702 PF00975 Thioesterase domain CH59_3704 PF16197 Ketoacyl-synthetase C-terminal extension CH59_3704 PF00698 Acyl transferase domain CH59_3704 PF00109 Beta-ketoacyl synthase, N-terminal domain CH59_3704 PF00668 Condensation domain CH59_3704 PF02801 Beta-ketoacyl synthase, C-terminal domain CH59_3704 PF00550 Phosphopantetheine attachment site CH59_3705 PF00550 Phosphopantetheine attachment site CH59_3705 PF08242 Methyltransferase domain CH59_3705 PF00501 AMP-binding enzyme CH59_3705 PF00668 Condensation domain CH59_3707 PF08021 Siderophore-interacting FAD-binding domain CH59_3707 PF00005 ABC transporter CH59_3707 PF04954 Siderophore-interacting protein CH59_3707 PF00664 ABC transporter transmembrane region CH59_3708 PF00005 ABC transporter CH59_3708 PF00664 ABC transporter transmembrane region CH59_3709 PF07690 Major Facilitator Superfamily CH59_3710 PF00425 chorismate binding enzyme CH59_3711 PF13356 Arm DNA-binding domain CH59_3711 PF00589 Phage integrase family CH59_3713 PF02753 Pili assembly chaperone PapD, C-terminal domain CH59_3713 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH59_3715 PF13953 PapC C-terminal domain CH59_3715 PF13954 PapC N-terminal domain CH59_3715 PF00577 Outer membrane usher protein CH59_3716 PF02753 Pili assembly chaperone PapD, C-terminal domain CH59_3716 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH59_3720 PF00196 Bacterial regulatory proteins, luxR family CH59_3720 PF00072 Response regulator receiver domain CH59_3722 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CH59_3722 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CH59_3723 PF01575 MaoC like domain CH59_3724 PF03328 HpcH/HpaI aldolase/citrate lyase family CH59_3725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_3725 PF03466 LysR substrate binding domain CH59_3729 PF04909 Amidohydrolase CH59_3731 PF02508 Rnf-Nqr subunit, membrane protein CH59_3732 PF00155 Aminotransferase class I and II CH59_3733 PF00324 Amino acid permease CH59_3734 PF08220 DeoR-like helix-turn-helix domain CH59_3734 PF00455 DeoR C terminal sensor domain CH59_3735 PF04960 Glutaminase CH59_3737 PF03239 Iron permease FTR1 family CH59_3738 PF10634 Fe2+ transport protein CH59_3740 PF00005 ABC transporter CH59_3740 PF02687 FtsX-like permease family CH59_3740 PF12704 MacB-like periplasmic core domain CH59_3743 PF02687 FtsX-like permease family CH59_3743 PF00005 ABC transporter CH59_3743 PF12704 MacB-like periplasmic core domain CH59_3744 PF00578 AhpC/TSA family CH59_3746 PF03848 Tellurite resistance protein TehB CH59_3746 PF09313 Domain of unknown function (DUF1971) CH59_3747 PF00557 Metallopeptidase family M24 CH59_3749 PF14883 Hypothetical glycosyl hydrolase family 13 CH59_3749 PF01522 Polysaccharide deacetylase CH59_3750 PF00535 Glycosyl transferase family 2 CH59_3751 PF13994 PgaD-like protein CH59_3754 PF02562 PhoH-like protein CH59_3755 PF01699 Sodium/calcium exchanger protein CH59_3756 PF00672 HAMP domain CH59_3756 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_3756 PF07730 Histidine kinase CH59_3756 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CH59_3757 PF00392 Bacterial regulatory proteins, gntR family CH59_3757 PF00155 Aminotransferase class I and II CH59_376 PF00698 Acyl transferase domain CH59_3760 PF00202 Aminotransferase class-III CH59_3761 PF04958 Arginine N-succinyltransferase beta subunit CH59_3762 PF00171 Aldehyde dehydrogenase family CH59_3763 PF04996 Succinylarginine dihydrolase CH59_3764 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CH59_3765 PF00267 Gram-negative porin CH59_3766 PF00665 Integrase core domain CH59_3766 PF02796 Helix-turn-helix domain of resolvase CH59_3768 PF01695 IstB-like ATP binding protein CH59_3769 PF01695 IstB-like ATP binding protein CH59_377 PF00550 Phosphopantetheine attachment site CH59_3770 PF02308 MgtC family CH59_3771 PF03891 Domain of unknown function (DUF333) CH59_3772 PF03724 META domain CH59_3773 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH59_3773 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH59_3774 PF11739 Dicarboxylate transport CH59_3775 PF13617 YnbE-like lipoprotein CH59_3776 PF07027 Protein of unknown function (DUF1318) CH59_3777 PF08125 Mannitol dehydrogenase C-terminal domain CH59_3777 PF01232 Mannitol dehydrogenase Rossmann domain CH59_3778 PF00325 Bacterial regulatory proteins, crp family CH59_3778 PF04198 Putative sugar-binding domain CH59_3779 PF02525 Flavodoxin-like fold CH59_3780 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CH59_3780 PF00270 DEAD/DEAH box helicase CH59_3780 PF11898 Domain of unknown function (DUF3418) CH59_3780 PF04408 Helicase associated domain (HA2) CH59_3780 PF00271 Helicase conserved C-terminal domain CH59_3783 PF00089 Trypsin CH59_3785 PF01292 Prokaryotic cytochrome b561 CH59_3786 PF04264 YceI-like domain CH59_3788 PF18807 Tripartite Tc toxins repeat CH59_3788 PF14431 YwqJ-like deaminase CH59_3789 PF01797 Transposase IS200 like CH59_3790 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CH59_3791 PF00672 HAMP domain CH59_3791 PF00512 His Kinase A (phospho-acceptor) domain CH59_3791 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_3792 PF00072 Response regulator receiver domain CH59_3792 PF00486 Transcriptional regulatory protein, C terminal CH59_3794 PF13520 Amino acid permease CH59_3795 PF07338 Protein of unknown function (DUF1471) CH59_3796 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CH59_3796 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CH59_3796 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CH59_3797 PF02233 NAD(P) transhydrogenase beta subunit CH59_3798 PF00582 Universal stress protein family CH59_3799 PF00027 Cyclic nucleotide-binding domain CH59_3799 PF13545 Crp-like helix-turn-helix domain CH59_38 PF13407 Periplasmic binding protein domain CH59_380 PF00378 Enoyl-CoA hydratase/isomerase CH59_3800 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH59_3800 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH59_3801 PF00245 Alkaline phosphatase CH59_3804 PF13419 Haloacid dehalogenase-like hydrolase CH59_3805 PF01842 ACT domain CH59_3806 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH59_3806 PF00205 Thiamine pyrophosphate enzyme, central domain CH59_3806 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH59_3809 PF01797 Transposase IS200 like CH59_3813 PF01048 Phosphorylase superfamily CH59_3813 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CH59_3814 PF00528 Binding-protein-dependent transport system inner membrane component CH59_3815 PF09084 NMT1/THI5 like CH59_3816 PF13407 Periplasmic binding protein domain CH59_3818 PF00356 Bacterial regulatory proteins, lacI family CH59_382 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal CH59_382 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal CH59_3822 PF05707 Zonular occludens toxin (Zot) CH59_3836 PF05707 Zonular occludens toxin (Zot) CH59_384 PF00109 Beta-ketoacyl synthase, N-terminal domain CH59_384 PF02801 Beta-ketoacyl synthase, C-terminal domain CH59_3846 PF00654 Voltage gated chloride channel CH59_3849 PF00480 ROK family CH59_385 PF07977 FabA-like domain CH59_3850 PF03466 LysR substrate binding domain CH59_3850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_3851 PF07690 Major Facilitator Superfamily CH59_3852 PF05472 DNA replication terminus site-binding protein (Ter protein) CH59_3853 PF00206 Lyase CH59_3853 PF10415 Fumarase C C-terminus CH59_3854 PF01238 Phosphomannose isomerase type I CH59_3855 PF06097 Bacterial protein of unknown function (DUF945) CH59_3857 PF13593 SBF-like CPA transporter family (DUF4137) CH59_3858 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH59_3858 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH59_3859 PF01695 IstB-like ATP binding protein CH59_3861 PF00665 Integrase core domain CH59_3861 PF02796 Helix-turn-helix domain of resolvase CH59_3862 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH59_3862 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH59_3863 PF02311 AraC-like ligand binding domain CH59_3863 PF12833 Helix-turn-helix domain CH59_3864 PF02653 Branched-chain amino acid transport system / permease component CH59_3865 PF00005 ABC transporter CH59_3866 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH59_3867 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH59_3868 PF02610 L-arabinose isomerase CH59_3868 PF11762 L-arabinose isomerase C-terminal domain CH59_3870 PF00005 ABC transporter CH59_3870 PF03412 Peptidase C39 family CH59_3870 PF00664 ABC transporter transmembrane region CH59_3872 PF13533 Biotin-lipoyl like CH59_3873 PF00005 ABC transporter CH59_3873 PF00664 ABC transporter transmembrane region CH59_3873 PF03412 Peptidase C39 family CH59_3874 PF10754 Protein of unknown function (DUF2569) CH59_3875 PF02508 Rnf-Nqr subunit, membrane protein CH59_3876 PF04060 Putative Fe-S cluster CH59_3877 PF10531 SLBB domain CH59_3877 PF13375 RnfC Barrel sandwich hybrid domain CH59_3877 PF13237 4Fe-4S dicluster domain CH59_3877 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH59_3878 PF12833 Helix-turn-helix domain CH59_3878 PF06445 GyrI-like small molecule binding domain CH59_3879 PF03116 NQR2, RnfD, RnfE family CH59_388 PF08031 Berberine and berberine like CH59_388 PF01565 FAD binding domain CH59_3880 PF04205 FMN-binding domain CH59_3881 PF02508 Rnf-Nqr subunit, membrane protein CH59_3882 PF10576 Iron-sulfur binding domain of endonuclease III CH59_3882 PF00730 HhH-GPD superfamily base excision DNA repair protein CH59_3882 PF00633 Helix-hairpin-helix motif CH59_3883 PF01370 NAD dependent epimerase/dehydratase family CH59_3884 PF07690 Major Facilitator Superfamily CH59_3885 PF17876 Cold shock domain CH59_3885 PF08206 Ribonuclease B OB domain CH59_3885 PF00773 RNB domain CH59_3885 PF00575 S1 RNA binding domain CH59_3886 PF02554 Carbon starvation protein CstA CH59_3886 PF13722 5TM C-terminal transporter carbon starvation CstA CH59_3887 PF04328 Selenoprotein, putative CH59_3888 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH59_3890 PF00596 Class II Aldolase and Adducin N-terminal domain CH59_3891 PF05433 Glycine zipper 2TM domain CH59_3892 PF01253 Translation initiation factor SUI1 CH59_3893 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CH59_3895 PF18073 Rubredoxin metal binding domain CH59_3896 PF06305 Lipopolysaccharide assembly protein A domain CH59_3897 PF01569 PAP2 superfamily CH59_3898 PF00925 GTP cyclohydrolase II CH59_3899 PF00330 Aconitase family (aconitate hydratase) CH59_3899 PF00694 Aconitase C-terminal domain CH59_39 PF00107 Zinc-binding dehydrogenase CH59_39 PF08240 Alcohol dehydrogenase GroES-like domain CH59_3901 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_3901 PF03466 LysR substrate binding domain CH59_3902 PF01751 Toprim domain CH59_3902 PF08272 Topoisomerase I zinc-ribbon-like CH59_3902 PF01131 DNA topoisomerase CH59_3902 PF01396 Topoisomerase DNA binding C4 zinc finger CH59_3904 PF10692 Protein of unknown function (DUF2498) CH59_3905 PF01343 Peptidase family S49 CH59_3905 PF08496 Peptidase family S49 N-terminal CH59_3906 PF00106 short chain dehydrogenase CH59_3907 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CH59_3908 PF00849 RNA pseudouridylate synthase CH59_3908 PF01479 S4 domain CH59_3909 PF01300 Telomere recombination CH59_3910 PF02811 PHP domain CH59_3911 PF00425 chorismate binding enzyme CH59_3911 PF04715 Anthranilate synthase component I, N terminal region CH59_3912 PF00117 Glutamine amidotransferase class-I CH59_3913 PF02885 Glycosyl transferase family, helical bundle domain CH59_3913 PF00591 Glycosyl transferase family, a/b domain CH59_3914 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CH59_3914 PF00218 Indole-3-glycerol phosphate synthase CH59_3915 PF00291 Pyridoxal-phosphate dependent enzyme CH59_3916 PF00290 Tryptophan synthase alpha chain CH59_3918 PF03922 OmpW family CH59_392 PF13610 DDE domain CH59_3922 PF04279 Intracellular septation protein A CH59_3923 PF03061 Thioesterase superfamily CH59_3924 PF00872 Transposase, Mutator family CH59_3925 PF00872 Transposase, Mutator family CH59_3926 PF03544 Gram-negative bacterial TonB protein C-terminal CH59_3927 PF03795 YCII-related domain CH59_3930 PF13505 Outer membrane protein beta-barrel domain CH59_3931 PF13091 PLD-like domain CH59_3931 PF13396 Phospholipase_D-nuclease N-terminal CH59_3932 PF04269 Protein of unknown function, DUF440 CH59_3934 PF00005 ABC transporter CH59_3934 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH59_3935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH59_3935 PF00005 ABC transporter CH59_3936 PF00528 Binding-protein-dependent transport system inner membrane component CH59_3936 PF12911 N-terminal TM domain of oligopeptide transport permease C CH59_3937 PF00528 Binding-protein-dependent transport system inner membrane component CH59_3938 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH59_3939 PF01914 MarC family integral membrane protein CH59_394 PF04358 DsrC like protein CH59_3940 PF00171 Aldehyde dehydrogenase family CH59_3940 PF00465 Iron-containing alcohol dehydrogenase CH59_3941 PF02796 Helix-turn-helix domain of resolvase CH59_3941 PF00665 Integrase core domain CH59_3943 PF01695 IstB-like ATP binding protein CH59_3944 PF00265 Thymidine kinase CH59_3945 PF00816 H-NS histone family CH59_3946 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH59_3946 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH59_3946 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH59_3947 PF00072 Response regulator receiver domain CH59_3948 PF02810 SEC-C motif CH59_3949 PF00872 Transposase, Mutator family CH59_395 PF00708 Acylphosphatase CH59_3950 PF00551 Formyl transferase CH59_3950 PF01842 ACT domain CH59_3951 PF00872 Transposase, Mutator family CH59_3954 PF03466 LysR substrate binding domain CH59_3954 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_3955 PF03372 Endonuclease/Exonuclease/phosphatase family CH59_3956 PF00293 NUDIX domain CH59_3957 PF07383 Protein of unknown function (DUF1496) CH59_3958 PF01751 Toprim domain CH59_3958 PF01131 DNA topoisomerase CH59_3959 PF02769 AIR synthase related protein, C-terminal domain CH59_3959 PF00586 AIR synthase related protein, N-terminal domain CH59_396 PF10672 S-adenosylmethionine-dependent methyltransferase CH59_396 PF17785 PUA-like domain CH59_3960 PF00881 Nitroreductase family CH59_3961 PF01343 Peptidase family S49 CH59_3962 PF17763 Glutaminase/Asparaginase C-terminal domain CH59_3962 PF00710 Asparaginase, N-terminal CH59_3963 PF00857 Isochorismatase family CH59_3964 PF07023 Protein of unknown function (DUF1315) CH59_3965 PF01641 SelR domain CH59_3966 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH59_3966 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH59_3967 PF01263 Aldose 1-epimerase CH59_3968 PF06629 MltA-interacting protein MipA CH59_3969 PF06798 PrkA serine protein kinase C-terminal domain CH59_3969 PF08298 PrkA AAA domain CH59_397 PF08755 Hemimethylated DNA-binding protein YccV like CH59_3970 PF04285 Protein of unknown function (DUF444) CH59_3972 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_3972 PF03466 LysR substrate binding domain CH59_3973 PF05726 Pirin C-terminal cupin domain CH59_3973 PF02678 Pirin CH59_3974 PF07690 Major Facilitator Superfamily CH59_3975 PF01266 FAD dependent oxidoreductase CH59_3976 PF04293 SpoVR like protein CH59_3977 PF07840 FadR C-terminal domain CH59_3977 PF00392 Bacterial regulatory proteins, gntR family CH59_3978 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CH59_3979 PF02600 Disulfide bond formation protein DsbB CH59_398 PF13380 CoA binding domain CH59_3982 PF00266 Aminotransferase class-V CH59_3984 PF00872 Transposase, Mutator family CH59_3985 PF00872 Transposase, Mutator family CH59_3986 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CH59_399 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CH59_4 PF09618 CRISPR-associated protein (Cas_Csy4) CH59_400 PF02142 MGS-like domain CH59_4001 PF01797 Transposase IS200 like CH59_401 PF13361 UvrD-like helicase C-terminal domain CH59_401 PF00580 UvrD/REP helicase N-terminal domain CH59_401 PF12462 DNA helicase IV / RNA helicase N terminal CH59_4017 PF00872 Transposase, Mutator family CH59_4018 PF00872 Transposase, Mutator family CH59_402 PF03733 Inner membrane component domain CH59_403 PF12805 FUSC-like inner membrane protein yccS CH59_4032 PF06530 Phage antitermination protein Q CH59_4034 PF05772 NinB protein CH59_4037 PF01695 IstB-like ATP binding protein CH59_4038 PF02796 Helix-turn-helix domain of resolvase CH59_4038 PF00665 Integrase core domain CH59_4039 PF00589 Phage integrase family CH59_4039 PF12167 Arm DNA-binding domain CH59_404 PF04993 TfoX N-terminal domain CH59_404 PF04994 TfoX C-terminal domain CH59_4040 PF03692 Putative zinc- or iron-chelating domain CH59_4041 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH59_4042 PF13406 Transglycosylase SLT domain CH59_4043 PF05166 YcgL domain CH59_4044 PF05209 Septum formation inhibitor MinC, N-terminal domain CH59_4044 PF03775 Septum formation inhibitor MinC, C-terminal domain CH59_4045 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CH59_4046 PF03776 Septum formation topological specificity factor MinE CH59_4047 PF01612 3'-5' exonuclease CH59_4047 PF00570 HRDC domain CH59_4048 PF13193 AMP-binding enzyme C-terminal domain CH59_4048 PF00501 AMP-binding enzyme CH59_4049 PF03843 Outer membrane lipoprotein Slp family CH59_405 PF03846 Cell division inhibitor SulA CH59_4050 PF00814 Glycoprotease family CH59_4051 PF04851 Type III restriction enzyme, res subunit CH59_4051 PF13307 Helicase C-terminal domain CH59_4052 PF01042 Endoribonuclease L-PSP CH59_4053 PF00893 Small Multidrug Resistance protein CH59_4054 PF00893 Small Multidrug Resistance protein CH59_4055 PF01081 KDPG and KHG aldolase CH59_4057 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CH59_4057 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CH59_4058 PF01418 Helix-turn-helix domain, rpiR family CH59_4058 PF01380 SIS domain CH59_4059 PF02887 Pyruvate kinase, alpha/beta domain CH59_4059 PF00224 Pyruvate kinase, barrel domain CH59_406 PF01389 OmpA-like transmembrane domain CH59_406 PF00691 OmpA family CH59_4060 PF03279 Bacterial lipid A biosynthesis acyltransferase CH59_4061 PF08525 Opacity-associated protein A N-terminal motif CH59_4061 PF01476 LysM domain CH59_4061 PF01551 Peptidase family M23 CH59_4062 PF01297 Zinc-uptake complex component A periplasmic CH59_4063 PF00005 ABC transporter CH59_4064 PF00950 ABC 3 transport family CH59_4065 PF05491 RuvB C-terminal winged helix domain CH59_4065 PF05496 Holliday junction DNA helicase RuvB P-loop domain CH59_4065 PF17864 RuvB AAA lid domain CH59_4066 PF01330 RuvA N terminal domain CH59_4066 PF07499 RuvA, C-terminal domain CH59_4067 PF02075 Crossover junction endodeoxyribonuclease RuvC CH59_4068 PF01709 Transcriptional regulator CH59_4069 PF00293 NUDIX domain CH59_407 PF01797 Transposase IS200 like CH59_4070 PF01336 OB-fold nucleic acid binding domain CH59_4070 PF00152 tRNA synthetases class II (D, K and N) CH59_4070 PF02938 GAD domain CH59_4071 PF01904 Protein of unknown function DUF72 CH59_4072 PF01124 MAPEG family CH59_4073 PF13649 Methyltransferase domain CH59_4074 PF08003 Protein of unknown function (DUF1698) CH59_4075 PF03932 CutC family CH59_4076 PF06185 YecM protein CH59_4077 PF05746 DALR anticodon binding domain CH59_4077 PF00750 tRNA synthetases class I (R) CH59_4077 PF03485 Arginyl tRNA synthetase N terminal domain CH59_4078 PF05860 haemagglutination activity domain CH59_4078 PF13332 Hemagglutinin repeat CH59_4079 PF05860 haemagglutination activity domain CH59_4079 PF13332 Hemagglutinin repeat CH59_408 PF17414 MatP C-terminal ribbon-helix-helix domain CH59_408 PF06303 MatP N-terminal domain CH59_4080 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH59_4080 PF17287 POTRA domain CH59_4080 PF08479 POTRA domain, ShlB-type CH59_4081 PF03023 Lipid II flippase MurJ CH59_4082 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH59_4083 PF13302 Acetyltransferase (GNAT) domain CH59_4084 PF07690 Major Facilitator Superfamily CH59_4085 PF07273 Protein of unknown function (DUF1439) CH59_4086 PF02613 Nitrate reductase delta subunit CH59_4087 PF02811 PHP domain CH59_4089 PF01325 Iron dependent repressor, N-terminal DNA binding domain CH59_4089 PF00480 ROK family CH59_409 PF13654 AAA domain CH59_409 PF05362 Lon protease (S16) C-terminal proteolytic domain CH59_4090 PF03009 Glycerophosphoryl diester phosphodiesterase family CH59_4091 PF08402 TOBE domain CH59_4091 PF00005 ABC transporter CH59_4092 PF01797 Transposase IS200 like CH59_4093 PF08402 TOBE domain CH59_4093 PF00005 ABC transporter CH59_4094 PF00528 Binding-protein-dependent transport system inner membrane component CH59_4095 PF00528 Binding-protein-dependent transport system inner membrane component CH59_4097 PF03009 Glycerophosphoryl diester phosphodiesterase family CH59_4099 PF01740 STAS domain CH59_4099 PF00916 Sulfate permease family CH59_410 PF07977 FabA-like domain CH59_4100 PF02796 Helix-turn-helix domain of resolvase CH59_4100 PF00665 Integrase core domain CH59_4101 PF01695 IstB-like ATP binding protein CH59_4102 PF01740 STAS domain CH59_4102 PF00916 Sulfate permease family CH59_4103 PF01797 Transposase IS200 like CH59_4104 PF00793 DAHP synthetase I family CH59_4105 PF13369 Transglutaminase-like superfamily CH59_4106 PF04247 Invasion gene expression up-regulator, SirB CH59_4107 PF13847 Methyltransferase domain CH59_4107 PF17827 PrmC N-terminal domain CH59_4108 PF00472 RF-1 domain CH59_4108 PF03462 PCRF domain CH59_4109 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CH59_4109 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CH59_4109 PF01488 Shikimate / quinate 5-dehydrogenase CH59_4110 PF03550 Outer membrane lipoprotein LolB CH59_4111 PF00288 GHMP kinases N terminal domain CH59_4111 PF08544 GHMP kinases C terminal CH59_4112 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CH59_4112 PF14572 Phosphoribosyl synthetase-associated domain CH59_4113 PF10762 Protein of unknown function (DUF2583) CH59_4114 PF01195 Peptidyl-tRNA hydrolase CH59_4115 PF01926 50S ribosome-binding GTPase CH59_4115 PF06071 Protein of unknown function (DUF933) CH59_412 PF00109 Beta-ketoacyl synthase, N-terminal domain CH59_412 PF02801 Beta-ketoacyl synthase, C-terminal domain CH59_4124 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CH59_4125 PF00072 Response regulator receiver domain CH59_4125 PF00486 Transcriptional regulatory protein, C terminal CH59_4126 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_4126 PF00672 HAMP domain CH59_4126 PF00512 His Kinase A (phospho-acceptor) domain CH59_413 PF00665 Integrase core domain CH59_413 PF02796 Helix-turn-helix domain of resolvase CH59_4135 PF08242 Methyltransferase domain CH59_414 PF01695 IstB-like ATP binding protein CH59_4140 PF00872 Transposase, Mutator family CH59_4141 PF00872 Transposase, Mutator family CH59_415 PF01695 IstB-like ATP binding protein CH59_4151 PF01370 NAD dependent epimerase/dehydratase family CH59_4152 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH59_4152 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH59_4153 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH59_4153 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH59_4155 PF05962 HutD CH59_4156 PF01979 Amidohydrolase family CH59_4157 PF00392 Bacterial regulatory proteins, gntR family CH59_4157 PF07702 UTRA domain CH59_4158 PF01979 Amidohydrolase family CH59_416 PF02801 Beta-ketoacyl synthase, C-terminal domain CH59_416 PF00109 Beta-ketoacyl synthase, N-terminal domain CH59_4160 PF01695 IstB-like ATP binding protein CH59_4161 PF02796 Helix-turn-helix domain of resolvase CH59_4161 PF00665 Integrase core domain CH59_4163 PF00893 Small Multidrug Resistance protein CH59_4164 PF10371 Domain of unknown function CH59_4164 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CH59_4164 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CH59_4164 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CH59_4164 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH59_4165 PF01171 PP-loop family CH59_4167 PF07859 alpha/beta hydrolase fold CH59_4167 PF13472 GDSL-like Lipase/Acylhydrolase family CH59_4169 PF01544 CorA-like Mg2+ transporter protein CH59_417 PF01797 Transposase IS200 like CH59_4170 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH59_4171 PF00246 Zinc carboxypeptidase CH59_4172 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH59_4172 PF13378 Enolase C-terminal domain-like CH59_4173 PF08534 Redoxin CH59_4174 PF01797 Transposase IS200 like CH59_4175 PF00158 Sigma-54 interaction domain CH59_4175 PF18024 Helix-turn-helix domain CH59_4178 PF05128 Domain of unknown function (DUF697) CH59_4179 PF04317 YcjX-like family, DUF463 CH59_418 PF03886 ABC-type transport auxiliary lipoprotein component CH59_4181 PF04024 PspC domain CH59_4182 PF06667 Phage shock protein B CH59_4183 PF04012 PspA/IM30 family CH59_4184 PF00158 Sigma-54 interaction domain CH59_4184 PF02954 Bacterial regulatory protein, Fis family CH59_4185 PF01797 Transposase IS200 like CH59_4186 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH59_4187 PF00528 Binding-protein-dependent transport system inner membrane component CH59_4188 PF12911 N-terminal TM domain of oligopeptide transport permease C CH59_4188 PF00528 Binding-protein-dependent transport system inner membrane component CH59_4189 PF00005 ABC transporter CH59_4189 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH59_419 PF02470 MlaD protein CH59_4190 PF00005 ABC transporter CH59_4193 PF00854 POT family CH59_4194 PF04893 Yip1 domain CH59_4195 PF11656 YjbD family (DUF3811) CH59_4196 PF00043 Glutathione S-transferase, C-terminal domain CH59_4196 PF02798 Glutathione S-transferase, N-terminal domain CH59_4197 PF08543 Phosphomethylpyrimidine kinase CH59_4198 PF01479 S4 domain CH59_4198 PF00579 tRNA synthetases class I (W and Y) CH59_4199 PF01243 Pyridoxamine 5'-phosphate oxidase CH59_4199 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CH59_420 PF04403 Paraquat-inducible protein A CH59_4200 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CH59_4201 PF03702 Anhydro-N-acetylmuramic acid kinase CH59_4202 PF05433 Glycine zipper 2TM domain CH59_4203 PF01047 MarR family CH59_4204 PF00248 Aldo/keto reductase family CH59_4205 PF06945 Protein of unknown function (DUF1289) CH59_4206 PF08019 Phosphoethanolamine transferase EptA/EptB CH59_4206 PF00884 Sulfatase CH59_4207 PF00440 Bacterial regulatory proteins, tetR family CH59_4207 PF16925 Tetracyclin repressor-like, C-terminal domain CH59_4208 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH59_4209 PF18807 Tripartite Tc toxins repeat CH59_4209 PF14431 YwqJ-like deaminase CH59_421 PF12848 ABC transporter CH59_421 PF16326 ABC transporter C-terminal domain CH59_421 PF00005 ABC transporter CH59_4210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH59_4211 PF00929 Exonuclease CH59_4212 PF00462 Glutaredoxin CH59_4214 PF00877 NlpC/P60 family CH59_4215 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH59_4215 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH59_4217 PF00356 Bacterial regulatory proteins, lacI family CH59_4218 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_4218 PF03466 LysR substrate binding domain CH59_4219 PF07690 Major Facilitator Superfamily CH59_422 PF10672 S-adenosylmethionine-dependent methyltransferase CH59_422 PF02926 THUMP domain CH59_422 PF01170 Putative RNA methylase family UPF0020 CH59_4221 PF00677 Lumazine binding domain CH59_4222 PF01554 MatE CH59_4225 PF02887 Pyruvate kinase, alpha/beta domain CH59_4225 PF00224 Pyruvate kinase, barrel domain CH59_4226 PF04728 Lipoprotein leucine-zipper CH59_4227 PF01797 Transposase IS200 like CH59_4228 PF01797 Transposase IS200 like CH59_4229 PF00665 Integrase core domain CH59_4229 PF02796 Helix-turn-helix domain of resolvase CH59_423 PF03476 MOSC N-terminal beta barrel domain CH59_423 PF03473 MOSC domain CH59_423 PF00111 2Fe-2S iron-sulfur cluster binding domain CH59_4232 PF01695 IstB-like ATP binding protein CH59_4233 PF03734 L,D-transpeptidase catalytic domain CH59_4233 PF01476 LysM domain CH59_4233 PF17969 L,D-transpeptidase C-terminal domain CH59_4234 PF02657 Fe-S metabolism associated domain CH59_4235 PF00266 Aminotransferase class-V CH59_4236 PF01458 Uncharacterized protein family (UPF0051) CH59_4237 PF00005 ABC transporter CH59_4238 PF01458 Uncharacterized protein family (UPF0051) CH59_4239 PF01521 Iron-sulphur cluster biosynthesis CH59_424 PF07126 Cell-division protein ZapC CH59_4240 PF03061 Thioesterase superfamily CH59_4241 PF01565 FAD binding domain CH59_4241 PF02913 FAD linked oxidases, C-terminal domain CH59_4241 PF13183 4Fe-4S dicluster domain CH59_4242 PF01594 AI-2E family transporter CH59_4243 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CH59_4243 PF00391 PEP-utilising enzyme, mobile domain CH59_4243 PF02896 PEP-utilising enzyme, TIM barrel domain CH59_4244 PF03618 Kinase/pyrophosphorylase CH59_4245 PF00793 DAHP synthetase I family CH59_4246 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CH59_4247 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CH59_4248 PF03099 Biotin/lipoate A/B protein ligase family CH59_4248 PF10437 Bacterial lipoate protein ligase C-terminus CH59_4249 PF00877 NlpC/P60 family CH59_425 PF01180 Dihydroorotate dehydrogenase CH59_4251 PF00892 EamA-like transporter family CH59_4252 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CH59_4253 PF01522 Polysaccharide deacetylase CH59_4254 PF02911 Formyl transferase, C-terminal domain CH59_4254 PF01370 NAD dependent epimerase/dehydratase family CH59_4254 PF00551 Formyl transferase CH59_4255 PF00535 Glycosyl transferase family 2 CH59_4256 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH59_4257 PF00005 ABC transporter CH59_4258 PF00255 Glutathione peroxidase CH59_4259 PF01032 FecCD transport family CH59_426 PF01433 Peptidase family M1 domain CH59_426 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CH59_426 PF11940 Domain of unknown function (DUF3458) Ig-like fold CH59_4261 PF00216 Bacterial DNA-binding protein CH59_4262 PF03483 B3/4 domain CH59_4262 PF03484 tRNA synthetase B5 domain CH59_4262 PF01588 Putative tRNA binding domain CH59_4262 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CH59_4262 PF03147 Ferredoxin-fold anticodon binding domain CH59_4263 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CH59_4263 PF01409 tRNA synthetases class II core domain (F) CH59_4264 PF00453 Ribosomal protein L20 CH59_4265 PF01632 Ribosomal protein L35 CH59_4266 PF00707 Translation initiation factor IF-3, C-terminal domain CH59_4266 PF05198 Translation initiation factor IF-3, N-terminal domain CH59_4267 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH59_4267 PF02824 TGS domain CH59_4267 PF03129 Anticodon binding domain CH59_4267 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH59_4268 PF13619 KTSC domain CH59_427 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CH59_427 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CH59_4270 PF01914 MarC family integral membrane protein CH59_4271 PF01464 Transglycosylase SLT domain CH59_4272 PF01297 Zinc-uptake complex component A periplasmic CH59_4273 PF00005 ABC transporter CH59_4274 PF00950 ABC 3 transport family CH59_4275 PF00950 ABC 3 transport family CH59_4277 PF14002 YniB-like protein CH59_4278 PF13419 Haloacid dehalogenase-like hydrolase CH59_4279 PF00872 Transposase, Mutator family CH59_428 PF01336 OB-fold nucleic acid binding domain CH59_428 PF00152 tRNA synthetases class II (D, K and N) CH59_4281 PF01266 FAD dependent oxidoreductase CH59_4282 PF00196 Bacterial regulatory proteins, luxR family CH59_4283 PF01594 AI-2E family transporter CH59_4287 PF03472 Autoinducer binding domain CH59_4287 PF00196 Bacterial regulatory proteins, luxR family CH59_4288 PF00765 Autoinducer synthase CH59_4289 PF03466 LysR substrate binding domain CH59_4289 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_429 PF00267 Gram-negative porin CH59_43 PF13505 Outer membrane protein beta-barrel domain CH59_430 PF00155 Aminotransferase class I and II CH59_431 PF00753 Metallo-beta-lactamase superfamily CH59_4311 PF03412 Peptidase C39 family CH59_4311 PF00005 ABC transporter CH59_4311 PF00664 ABC transporter transmembrane region CH59_4312 PF17762 HTH domain found in ParB protein CH59_4312 PF02195 ParB-like nuclease domain CH59_4313 PF02195 ParB-like nuclease domain CH59_4313 PF17762 HTH domain found in ParB protein CH59_4314 PF17191 RecG wedge domain CH59_4314 PF00271 Helicase conserved C-terminal domain CH59_4314 PF00270 DEAD/DEAH box helicase CH59_432 PF05951 Bacterial protein of unknown function (DUF882) CH59_4323 PF01797 Transposase IS200 like CH59_433 PF01471 Putative peptidoglycan binding domain CH59_433 PF03734 L,D-transpeptidase catalytic domain CH59_4332 PF01051 Initiator Replication protein CH59_434 PF01797 Transposase IS200 like CH59_4340 PF00154 recA bacterial DNA recombination protein CH59_4342 PF01367 5'-3' exonuclease, C-terminal SAM fold CH59_4342 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH59_4348 PF02811 PHP domain CH59_4348 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH59_4348 PF14579 Helix-hairpin-helix motif CH59_4348 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH59_4349 PF01695 IstB-like ATP binding protein CH59_435 PF04310 MukB N-terminal CH59_435 PF16330 MukB hinge domain CH59_4352 PF02796 Helix-turn-helix domain of resolvase CH59_4352 PF00665 Integrase core domain CH59_4353 PF02195 ParB-like nuclease domain CH59_4354 PF06006 Bacterial protein of unknown function (DUF905) CH59_4357 PF07128 Protein of unknown function (DUF1380) CH59_4359 PF01555 DNA methylase CH59_436 PF04288 MukE-like family CH59_4362 PF08775 ParB family CH59_4362 PF02195 ParB-like nuclease domain CH59_4363 PF18607 ParA helix turn helix domain CH59_4363 PF13614 AAA domain CH59_4366 PF02796 Helix-turn-helix domain of resolvase CH59_4366 PF00239 Resolvase, N terminal domain CH59_4367 PF04754 Putative transposase, YhgA-like CH59_4369 PF13091 PLD-like domain CH59_437 PF03882 MukF winged-helix domain CH59_437 PF17192 MukF middle domain CH59_437 PF17193 MukF C-terminal domain CH59_4371 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CH59_4372 PF01548 Transposase CH59_4372 PF02371 Transposase IS116/IS110/IS902 family CH59_4373 PF00872 Transposase, Mutator family CH59_4374 PF00872 Transposase, Mutator family CH59_4375 PF12833 Helix-turn-helix domain CH59_4375 PF06445 GyrI-like small molecule binding domain CH59_4377 PF02753 Pili assembly chaperone PapD, C-terminal domain CH59_4377 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH59_4378 PF13953 PapC C-terminal domain CH59_4378 PF13954 PapC N-terminal domain CH59_4378 PF00577 Outer membrane usher protein CH59_4379 PF09255 Caf1 Capsule antigen CH59_4383 PF11775 Cobalamin biosynthesis protein CobT VWA domain CH59_4383 PF06213 Cobalamin biosynthesis protein CobT CH59_4385 PF02811 PHP domain CH59_4385 PF14579 Helix-hairpin-helix motif CH59_4385 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH59_4385 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH59_4386 PF02796 Helix-turn-helix domain of resolvase CH59_4386 PF00665 Integrase core domain CH59_4387 PF01695 IstB-like ATP binding protein CH59_4388 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CH59_439 PF01636 Phosphotransferase enzyme family CH59_4390 PF03335 Phage tail fibre repeat CH59_4390 PF08400 Prophage tail fibre N-terminal CH59_4390 PF07484 Phage Tail Collar Domain CH59_4390 PF08400 Prophage tail fibre N-terminal CH59_4390 PF03335 Phage tail fibre repeat CH59_4390 PF07484 Phage Tail Collar Domain CH59_4393 PF00813 FliP family CH59_4394 PF01313 Bacterial export proteins, family 3 CH59_4395 PF01311 Bacterial export proteins, family 1 CH59_4396 PF01312 FlhB HrpN YscU SpaS Family CH59_4398 PF02311 AraC-like ligand binding domain CH59_4398 PF12833 Helix-turn-helix domain CH59_4399 PF05932 Tir chaperone protein (CesT) family CH59_44 PF00892 EamA-like transporter family CH59_440 PF02348 Cytidylyltransferase CH59_4401 PF16693 Inner membrane component of T3SS, periplasmic domain CH59_4401 PF16697 Inner membrane component of T3SS, cytoplasmic domain CH59_4402 PF08988 Type III secretion system, cytoplasmic E component of needle CH59_4403 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF CH59_4404 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) CH59_4405 PF09025 YopR, type III needle-polymerisation regulator CH59_4406 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI CH59_4407 PF01514 Secretory protein of YscJ/FliF family CH59_4408 PF06578 YOP proteins translocation protein K (YscK) CH59_4409 PF02108 Flagellar assembly protein FliH CH59_441 PF03966 Trm112p-like protein CH59_4410 PF09013 YopH, N-terminal CH59_4411 PF01527 Transposase CH59_4413 PF13683 Integrase core domain CH59_4413 PF13276 HTH-like domain CH59_4415 PF00102 Protein-tyrosine phosphatase CH59_4415 PF09013 YopH, N-terminal CH59_4416 PF13276 HTH-like domain CH59_4416 PF13683 Integrase core domain CH59_4418 PF00069 Protein kinase domain CH59_4418 PF09632 Rac1-binding domain CH59_442 PF00313 'Cold-shock' DNA-binding domain CH59_4426 PF02387 IncFII RepA protein family CH59_4427 PF10723 Replication regulatory protein RepB CH59_443 PF07063 Domain of unknown function (DUF1338) CH59_4434 PF03895 YadA-like membrane anchor domain CH59_4434 PF05662 Coiled stalk of trimeric autotransporter adhesin CH59_4434 PF05658 Head domain of trimeric autotransporter adhesin CH59_4436 PF03895 YadA-like membrane anchor domain CH59_4436 PF05662 Coiled stalk of trimeric autotransporter adhesin CH59_4436 PF05658 Head domain of trimeric autotransporter adhesin CH59_4437 PF01526 Tn3 transposase DDE domain CH59_4437 PF13700 Domain of unknown function (DUF4158) CH59_4439 PF02796 Helix-turn-helix domain of resolvase CH59_4439 PF00239 Resolvase, N terminal domain CH59_444 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CH59_4442 PF01527 Transposase CH59_4443 PF13276 HTH-like domain CH59_4443 PF13683 Integrase core domain CH59_4445 PF01695 IstB-like ATP binding protein CH59_4447 PF00665 Integrase core domain CH59_4447 PF02796 Helix-turn-helix domain of resolvase CH59_4448 PF01695 IstB-like ATP binding protein CH59_445 PF00664 ABC transporter transmembrane region CH59_445 PF00005 ABC transporter CH59_4450 PF13276 HTH-like domain CH59_4450 PF13683 Integrase core domain CH59_4451 PF05932 Tir chaperone protein (CesT) family CH59_4452 PF09020 YopE, N terminal CH59_4452 PF03545 Yersinia virulence determinant (YopE) CH59_4454 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH CH59_4456 PF02195 ParB-like nuclease domain CH59_4456 PF18090 Centromere-binding protein HTH domain CH59_4457 PF13614 AAA domain CH59_4459 PF13276 HTH-like domain CH59_4459 PF13333 Integrase core domain CH59_4459 PF00665 Integrase core domain CH59_446 PF03772 Competence protein CH59_446 PF00753 Metallo-beta-lactamase superfamily CH59_4461 PF05818 Enterobacterial TraT complement resistance protein CH59_4463 PF03543 Yersinia/Haemophilus virulence surface antigen CH59_4464 PF05932 Tir chaperone protein (CesT) family CH59_4466 PF12468 Type III secretion system leucine rich repeat protein CH59_4467 PF05844 YopD protein CH59_4468 PF04888 Secretion system effector C (SseC) like family CH59_4469 PF07720 Tetratricopeptide repeat CH59_447 PF00216 Bacterial DNA-binding protein CH59_4470 PF04792 V antigen (LcrV) protein CH59_4471 PF07216 LcrG protein CH59_4472 PF09621 Type III secretion system regulator (LcrR) CH59_4473 PF00771 FHIPEP family CH59_4475 PF09474 Type III secretion system YscX (type_III_YscX) CH59_4477 PF09059 TyeA CH59_4478 PF07201 HrpJ-like domain CH59_4479 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH59_4479 PF18269 T3SS EscN ATPase C-terminal domain CH59_4479 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH59_4480 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH59_4480 PF18269 T3SS EscN ATPase C-terminal domain CH59_4480 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH59_4481 PF07321 Type III secretion protein YscO CH59_4482 PF02120 Flagellar hook-length control protein FliK CH59_4483 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH59_4484 PF01278 Omptin family CH59_4486 PF05973 Phage derived protein Gp49-like (DUF891) CH59_4487 PF00665 Integrase core domain CH59_4487 PF02796 Helix-turn-helix domain of resolvase CH59_4488 PF01695 IstB-like ATP binding protein CH59_4489 PF01815 Rop protein CH59_449 PF00575 S1 RNA binding domain CH59_450 PF02224 Cytidylate kinase CH59_451 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH59_452 PF00266 Aminotransferase class-V CH59_454 PF03895 YadA-like membrane anchor domain CH59_454 PF13018 Extended Signal Peptide of Type V secretion system CH59_454 PF05662 Coiled stalk of trimeric autotransporter adhesin CH59_454 PF13018 Extended Signal Peptide of Type V secretion system CH59_454 PF03895 YadA-like membrane anchor domain CH59_454 PF05658 Head domain of trimeric autotransporter adhesin CH59_454 PF05662 Coiled stalk of trimeric autotransporter adhesin CH59_454 PF05658 Head domain of trimeric autotransporter adhesin CH59_455 PF00710 Asparaginase, N-terminal CH59_455 PF17763 Glutaminase/Asparaginase C-terminal domain CH59_456 PF18381 YcaO cyclodehydratase C-terminal domain CH59_456 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CH59_457 PF01226 Formate/nitrite transporter CH59_458 PF01228 Glycine radical CH59_458 PF02901 Pyruvate formate lyase-like CH59_46 PF13649 Methyltransferase domain CH59_460 PF04055 Radical SAM superfamily CH59_461 PF07690 Major Facilitator Superfamily CH59_462 PF02403 Seryl-tRNA synthetase N-terminal domain CH59_462 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH59_463 PF12002 MgsA AAA+ ATPase C terminal CH59_463 PF16193 AAA C-terminal domain CH59_463 PF00004 ATPase family associated with various cellular activities (AAA) CH59_465 PF03548 Outer membrane lipoprotein carrier protein LolA CH59_466 PF01580 FtsK/SpoIIIE family CH59_466 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CH59_466 PF17854 FtsK alpha domain CH59_466 PF09397 Ftsk gamma domain CH59_467 PF01037 Lrp/AsnC ligand binding domain CH59_468 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH59_469 PF00664 ABC transporter transmembrane region CH59_469 PF00005 ABC transporter CH59_47 PF00210 Ferritin-like domain CH59_470 PF00005 ABC transporter CH59_470 PF00664 ABC transporter transmembrane region CH59_471 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CH59_472 PF01176 Translation initiation factor 1A / IF-1 CH59_473 PF01797 Transposase IS200 like CH59_474 PF07724 AAA domain (Cdc48 subfamily) CH59_474 PF17871 AAA lid domain CH59_474 PF02861 Clp amino terminal domain, pathogenicity island component CH59_474 PF10431 C-terminal, D2-small domain, of ClpB protein CH59_474 PF00004 ATPase family associated with various cellular activities (AAA) CH59_475 PF02617 ATP-dependent Clp protease adaptor protein ClpS CH59_476 PF00313 'Cold-shock' DNA-binding domain CH59_477 PF00005 ABC transporter CH59_477 PF02687 FtsX-like permease family CH59_477 PF12704 MacB-like periplasmic core domain CH59_478 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH59_479 PF04393 Protein of unknown function (DUF535) CH59_480 PF11398 Protein of unknown function (DUF2813) CH59_481 PF03956 Lysine exporter LysO CH59_482 PF03063 Prismane/CO dehydrogenase family CH59_483 PF00970 Oxidoreductase FAD-binding domain CH59_483 PF00111 2Fe-2S iron-sulfur cluster binding domain CH59_483 PF00175 Oxidoreductase NAD-binding domain CH59_484 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH59_484 PF00205 Thiamine pyrophosphate enzyme, central domain CH59_484 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH59_485 PF01212 Beta-eliminating lyase CH59_486 PF11066 Protein of unknown function (DUF2867) CH59_486 PF13460 NAD(P)H-binding CH59_487 PF01370 NAD dependent epimerase/dehydratase family CH59_488 PF12883 Protein of unknown function (DUF3828) CH59_489 PF01817 Chorismate mutase type II CH59_49 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH59_490 PF00005 ABC transporter CH59_491 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH59_492 PF00528 Binding-protein-dependent transport system inner membrane component CH59_493 PF00528 Binding-protein-dependent transport system inner membrane component CH59_494 PF00892 EamA-like transporter family CH59_495 PF10100 Staphylopine dehydrogenase CH59_496 PF03059 Nicotianamine synthase protein CH59_497 PF00005 ABC transporter CH59_498 PF01032 FecCD transport family CH59_5 PF09615 CRISPR-associated protein (Cas_Csy3) CH59_50 PF00528 Binding-protein-dependent transport system inner membrane component CH59_503 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH59_504 PF01695 IstB-like ATP binding protein CH59_506 PF00665 Integrase core domain CH59_506 PF02796 Helix-turn-helix domain of resolvase CH59_507 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH59_508 PF05958 tRNA (Uracil-5-)-methyltransferase CH59_509 PF10767 Protein of unknown function (DUF2593) CH59_51 PF00005 ABC transporter CH59_510 PF00528 Binding-protein-dependent transport system inner membrane component CH59_511 PF00528 Binding-protein-dependent transport system inner membrane component CH59_512 PF00005 ABC transporter CH59_512 PF08402 TOBE domain CH59_513 PF13416 Bacterial extracellular solute-binding protein CH59_514 PF10722 Putative bacterial sensory transduction regulator CH59_515 PF07214 Protein of unknown function (DUF1418) CH59_516 PF00462 Glutaredoxin CH59_517 PF02080 TrkA-C domain CH59_517 PF06826 Predicted Permease Membrane Region CH59_519 PF01569 PAP2 superfamily CH59_52 PF13426 PAS domain CH59_52 PF08447 PAS fold CH59_52 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH59_520 PF01791 DeoC/LacD family aldolase CH59_521 PF08220 DeoR-like helix-turn-helix domain CH59_521 PF00455 DeoR C terminal sensor domain CH59_523 PF00768 D-alanyl-D-alanine carboxypeptidase CH59_523 PF07943 Penicillin-binding protein 5, C-terminal domain CH59_524 PF00528 Binding-protein-dependent transport system inner membrane component CH59_525 PF00005 ABC transporter CH59_525 PF09383 NIL domain CH59_526 PF03180 NLPA lipoprotein CH59_529 PF13417 Glutathione S-transferase, N-terminal domain CH59_529 PF00043 Glutathione S-transferase, C-terminal domain CH59_53 PF00665 Integrase core domain CH59_53 PF02796 Helix-turn-helix domain of resolvase CH59_530 PF07715 TonB-dependent Receptor Plug Domain CH59_530 PF00593 TonB dependent receptor CH59_531 PF00005 ABC transporter CH59_532 PF01032 FecCD transport family CH59_534 PF00324 Amino acid permease CH59_536 PF03466 LysR substrate binding domain CH59_536 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_537 PF03601 Conserved hypothetical protein 698 CH59_538 PF01261 Xylose isomerase-like TIM barrel CH59_539 PF00577 Outer membrane usher protein CH59_539 PF13954 PapC N-terminal domain CH59_539 PF13953 PapC C-terminal domain CH59_54 PF00665 Integrase core domain CH59_54 PF02796 Helix-turn-helix domain of resolvase CH59_540 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH59_540 PF02753 Pili assembly chaperone PapD, C-terminal domain CH59_542 PF17550 Family of unknown function CH59_543 PF00486 Transcriptional regulatory protein, C terminal CH59_544 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH59_544 PF02378 Phosphotransferase system, EIIC CH59_545 PF00294 pfkB family carbohydrate kinase CH59_546 PF00381 PTS HPr component phosphorylation site CH59_546 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH59_547 PF00293 NUDIX domain CH59_548 PF02653 Branched-chain amino acid transport system / permease component CH59_549 PF00005 ABC transporter CH59_55 PF01695 IstB-like ATP binding protein CH59_551 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH59_552 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH59_552 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH59_553 PF00171 Aldehyde dehydrogenase family CH59_555 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH59_555 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH59_555 PF01842 ACT domain CH59_557 PF03692 Putative zinc- or iron-chelating domain CH59_558 PF03222 Tryptophan/tyrosine permease family CH59_559 PF08207 Elongation factor P (EF-P) KOW-like domain CH59_559 PF09285 Elongation factor P, C-terminal CH59_559 PF01132 Elongation factor P (EF-P) OB domain CH59_56 PF05971 RNA methyltransferase CH59_560 PF03786 D-mannonate dehydratase (UxuA) CH59_561 PF01232 Mannitol dehydrogenase Rossmann domain CH59_561 PF08125 Mannitol dehydrogenase C-terminal domain CH59_562 PF00392 Bacterial regulatory proteins, gntR family CH59_562 PF07729 FCD domain CH59_564 PF07683 Cobalamin synthesis protein cobW C-terminal domain CH59_564 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH59_565 PF01569 PAP2 superfamily CH59_566 PF00877 NlpC/P60 family CH59_568 PF00563 EAL domain CH59_568 PF12792 CSS motif domain associated with EAL CH59_569 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH59_57 PF07338 Protein of unknown function (DUF1471) CH59_570 PF00528 Binding-protein-dependent transport system inner membrane component CH59_571 PF00528 Binding-protein-dependent transport system inner membrane component CH59_571 PF12911 N-terminal TM domain of oligopeptide transport permease C CH59_572 PF00005 ABC transporter CH59_572 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH59_573 PF13989 YejG-like protein CH59_574 PF07690 Major Facilitator Superfamily CH59_575 PF01479 S4 domain CH59_575 PF00849 RNA pseudouridylate synthase CH59_576 PF00271 Helicase conserved C-terminal domain CH59_576 PF04851 Type III restriction enzyme, res subunit CH59_577 PF01386 Ribosomal L25p family CH59_578 PF01797 Transposase IS200 like CH59_579 PF04245 37-kD nucleoid-associated bacterial protein CH59_58 PF02885 Glycosyl transferase family, helical bundle domain CH59_580 PF07208 Protein of unknown function (DUF1414) CH59_581 PF11893 Domain of unknown function (DUF3413) CH59_581 PF00884 Sulfatase CH59_584 PF05638 Type VI secretion system effector, Hcp CH59_588 PF00232 Glycosyl hydrolase family 1 CH59_59 PF00501 AMP-binding enzyme CH59_59 PF13193 AMP-binding enzyme C-terminal domain CH59_590 PF01380 SIS domain CH59_590 PF01418 Helix-turn-helix domain, rpiR family CH59_591 PF07484 Phage Tail Collar Domain CH59_594 PF04865 Baseplate J-like protein CH59_6 PF09614 CRISPR-associated protein (Cas_Csy2) CH59_60 PF13378 Enolase C-terminal domain-like CH59_602 PF04984 Phage tail sheath protein subtilisin-like domain CH59_602 PF17482 Phage tail sheath C-terminal domain CH59_606 PF01261 Xylose isomerase-like TIM barrel CH59_607 PF00455 DeoR C terminal sensor domain CH59_607 PF08220 DeoR-like helix-turn-helix domain CH59_608 PF00596 Class II Aldolase and Adducin N-terminal domain CH59_609 PF07005 Sugar-binding N-terminal domain CH59_609 PF17042 Nucleotide-binding C-terminal domain CH59_61 PF00378 Enoyl-CoA hydratase/isomerase CH59_610 PF06530 Phage antitermination protein Q CH59_611 PF01381 Helix-turn-helix CH59_611 PF00717 Peptidase S24-like CH59_612 PF06183 DinI-like family CH59_613 PF01278 Omptin family CH59_614 PF02743 Cache domain CH59_614 PF00672 HAMP domain CH59_614 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH59_615 PF12706 Beta-lactamase superfamily domain CH59_617 PF00144 Beta-lactamase CH59_62 PF12697 Alpha/beta hydrolase family CH59_620 PF01797 Transposase IS200 like CH59_621 PF00267 Gram-negative porin CH59_623 PF07690 Major Facilitator Superfamily CH59_624 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_624 PF16359 RcsD-ABL domain CH59_624 PF01627 Hpt domain CH59_625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_625 PF01627 Hpt domain CH59_625 PF16359 RcsD-ABL domain CH59_626 PF00072 Response regulator receiver domain CH59_626 PF00196 Bacterial regulatory proteins, luxR family CH59_627 PF09456 RcsC Alpha-Beta-Loop (ABL) CH59_627 PF00512 His Kinase A (phospho-acceptor) domain CH59_627 PF00072 Response regulator receiver domain CH59_627 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_628 PF00521 DNA gyrase/topoisomerase IV, subunit A CH59_628 PF03989 DNA gyrase C-terminal domain, beta-propeller CH59_63 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH59_63 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH59_63 PF16582 Middle domain of thiamine pyrophosphate CH59_630 PF02867 Ribonucleotide reductase, barrel domain CH59_630 PF03477 ATP cone domain CH59_630 PF00317 Ribonucleotide reductase, all-alpha domain CH59_631 PF00268 Ribonucleotide reductase, small chain CH59_632 PF00111 2Fe-2S iron-sulfur cluster binding domain CH59_633 PF03974 Ecotin CH59_634 PF00994 Probable molybdopterin binding domain CH59_635 PF03222 Tryptophan/tyrosine permease family CH59_636 PF07437 YfaZ precursor CH59_637 PF06628 Catalase-related immune-responsive CH59_637 PF00199 Catalase CH59_638 PF06733 DEAD_2 CH59_638 PF13307 Helicase C-terminal domain CH59_639 PF00267 Gram-negative porin CH59_64 PF00425 chorismate binding enzyme CH59_640 PF00892 EamA-like transporter family CH59_642 PF01276 Orn/Lys/Arg decarboxylase, major domain CH59_642 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH59_642 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH59_643 PF13520 Amino acid permease CH59_644 PF00528 Binding-protein-dependent transport system inner membrane component CH59_645 PF00005 ABC transporter CH59_646 PF00528 Binding-protein-dependent transport system inner membrane component CH59_649 PF00581 Rhodanese-like domain CH59_652 PF00005 ABC transporter CH59_653 PF00005 ABC transporter CH59_654 PF02653 Branched-chain amino acid transport system / permease component CH59_655 PF02653 Branched-chain amino acid transport system / permease component CH59_656 PF13188 PAS domain CH59_656 PF02954 Bacterial regulatory protein, Fis family CH59_656 PF00158 Sigma-54 interaction domain CH59_657 PF07308 Protein of unknown function (DUF1456) CH59_658 PF00528 Binding-protein-dependent transport system inner membrane component CH59_659 PF00528 Binding-protein-dependent transport system inner membrane component CH59_66 PF05957 Bacterial protein of unknown function (DUF883) CH59_661 PF00005 ABC transporter CH59_662 PF04226 Transglycosylase associated protein CH59_664 PF01844 HNH endonuclease CH59_665 PF01928 CYTH domain CH59_666 PF09330 D-lactate dehydrogenase, membrane binding CH59_666 PF01565 FAD binding domain CH59_667 PF00768 D-alanyl-D-alanine carboxypeptidase CH59_669 PF01207 Dihydrouridine synthase (Dus) CH59_671 PF01797 Transposase IS200 like CH59_672 PF03825 Nucleoside H+ symporter CH59_673 PF01048 Phosphorylase superfamily CH59_675 PF03466 LysR substrate binding domain CH59_675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_676 PF02028 BCCT, betaine/carnitine/choline family transporter CH59_677 PF00440 Bacterial regulatory proteins, tetR family CH59_677 PF13977 BetI-type transcriptional repressor, C-terminal CH59_678 PF00171 Aldehyde dehydrogenase family CH59_679 PF05199 GMC oxidoreductase CH59_679 PF00732 GMC oxidoreductase CH59_68 PF00920 Dehydratase family CH59_680 PF01797 Transposase IS200 like CH59_681 PF01797 Transposase IS200 like CH59_682 PF01027 Inhibitor of apoptosis-promoting Bax1 CH59_683 PF02391 MoaE protein CH59_684 PF02597 ThiS family CH59_685 PF01967 MoaC family CH59_686 PF06463 Molybdenum Cofactor Synthesis C CH59_686 PF04055 Radical SAM superfamily CH59_688 PF01933 Uncharacterised protein family UPF0052 CH59_689 PF09905 DNA-binding protein VF530 CH59_69 PF03928 Haem-degrading CH59_690 PF00271 Helicase conserved C-terminal domain CH59_690 PF04851 Type III restriction enzyme, res subunit CH59_690 PF02151 UvrB/uvrC motif CH59_690 PF12344 Ultra-violet resistance protein B CH59_690 PF17757 UvrB interaction domain CH59_693 PF08241 Methyltransferase domain CH59_694 PF00155 Aminotransferase class I and II CH59_695 PF06968 Biotin and Thiamin Synthesis associated domain CH59_695 PF04055 Radical SAM superfamily CH59_696 PF00202 Aminotransferase class-III CH59_697 PF10282 Lactonase, 7-bladed beta-propeller CH59_699 PF00005 ABC transporter CH59_699 PF03459 TOBE domain CH59_7 PF09611 CRISPR-associated protein (Cas_Csy1) CH59_70 PF07690 Major Facilitator Superfamily CH59_700 PF00528 Binding-protein-dependent transport system inner membrane component CH59_702 PF10766 Multidrug efflux pump-associated protein AcrZ CH59_703 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_703 PF03459 TOBE domain CH59_704 PF00005 ABC transporter CH59_707 PF16363 GDP-mannose 4,6 dehydratase CH59_708 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CH59_708 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CH59_709 PF08544 GHMP kinases C terminal CH59_709 PF00288 GHMP kinases N terminal domain CH59_709 PF10509 Galactokinase galactose-binding signature CH59_71 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH59_71 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH59_711 PF01263 Aldose 1-epimerase CH59_713 PF00300 Histidine phosphatase superfamily (branch 1) CH59_714 PF02796 Helix-turn-helix domain of resolvase CH59_714 PF00665 Integrase core domain CH59_715 PF01695 IstB-like ATP binding protein CH59_716 PF00793 DAHP synthetase I family CH59_718 PF01545 Cation efflux family CH59_719 PF04973 Nicotinamide mononucleotide transporter CH59_72 PF00356 Bacterial regulatory proteins, lacI family CH59_720 PF02445 Quinolinate synthetase A protein CH59_724 PF16331 TolA binding protein trimerisation CH59_724 PF13174 Tetratricopeptide repeat CH59_725 PF00691 OmpA family CH59_726 PF07676 WD40-like Beta Propeller Repeat CH59_726 PF04052 TolB amino-terminal domain CH59_727 PF06519 TolA C-terminal CH59_727 PF06519 TolA C-terminal CH59_728 PF02472 Biopolymer transport protein ExbD/TolR CH59_729 PF01618 MotA/TolQ/ExbB proton channel family CH59_730 PF03061 Thioesterase superfamily CH59_731 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) CH59_732 PF08173 Membrane bound YbgT-like protein CH59_733 PF02322 Cytochrome bd terminal oxidase subunit II CH59_734 PF01654 Cytochrome bd terminal oxidase subunit I CH59_735 PF02629 CoA binding domain CH59_735 PF00549 CoA-ligase CH59_736 PF00549 CoA-ligase CH59_736 PF08442 ATP-grasp domain CH59_739 PF02779 Transketolase, pyrimidine binding domain CH59_739 PF16078 2-oxoglutarate dehydrogenase N-terminus CH59_739 PF00676 Dehydrogenase E1 component CH59_739 PF16870 2-oxoglutarate dehydrogenase C-terminal CH59_74 PF00106 short chain dehydrogenase CH59_740 PF13085 2Fe-2S iron-sulfur cluster binding domain CH59_741 PF00890 FAD binding domain CH59_741 PF02910 Fumarate reductase flavoprotein C-term CH59_742 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH59_743 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH59_744 PF00285 Citrate synthase, C-terminal domain CH59_745 PF01025 GrpE CH59_746 PF01513 ATP-NAD kinase CH59_747 PF02463 RecF/RecN/SMC N terminal domain CH59_748 PF04355 SmpA / OmlA family CH59_749 PF03658 RnfH family Ubiquitin CH59_75 PF01202 Shikimate kinase CH59_750 PF03364 Polyketide cyclase / dehydrase and lipid transport CH59_751 PF01668 SmpB protein CH59_752 PF01797 Transposase IS200 like CH59_753 PF00589 Phage integrase family CH59_753 PF13356 Arm DNA-binding domain CH59_76 PF04074 YhcH/YjgK/YiaL CH59_763 PF05973 Phage derived protein Gp49-like (DUF891) CH59_765 PF02796 Helix-turn-helix domain of resolvase CH59_765 PF00665 Integrase core domain CH59_766 PF01695 IstB-like ATP binding protein CH59_769 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CH59_771 PF00929 Exonuclease CH59_772 PF00075 RNase H CH59_773 PF08241 Methyltransferase domain CH59_774 PF00753 Metallo-beta-lactamase superfamily CH59_774 PF16123 Hydroxyacylglutathione hydrolase C-terminus CH59_775 PF01476 LysM domain CH59_775 PF01464 Transglycosylase SLT domain CH59_776 PF03372 Endonuclease/Exonuclease/phosphatase family CH59_778 PF00248 Aldo/keto reductase family CH59_78 PF00361 Proton-conducting membrane transporter CH59_785 PF09383 NIL domain CH59_785 PF00005 ABC transporter CH59_786 PF00528 Binding-protein-dependent transport system inner membrane component CH59_787 PF03180 NLPA lipoprotein CH59_788 PF16358 RcsF lipoprotein CH59_789 PF01980 tRNA-methyltransferase O CH59_789 PF18389 TrmO C-terminal domain CH59_79 PF00361 Proton-conducting membrane transporter CH59_790 PF04073 Aminoacyl-tRNA editing domain CH59_790 PF03129 Anticodon binding domain CH59_790 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH59_791 PF17185 NlpE C-terminal OB domain CH59_791 PF04170 NlpE N-terminal domain CH59_792 PF00472 RF-1 domain CH59_793 PF07152 YaeQ protein CH59_794 PF06786 Uncharacterised protein family (UPF0253) CH59_795 PF07073 Modulator of Rho-dependent transcription termination (ROF) CH59_796 PF00034 Cytochrome c CH59_797 PF01171 PP-loop family CH59_797 PF09179 TilS substrate binding domain CH59_797 PF11734 TilS substrate C-terminal domain CH59_798 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH59_799 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CH59_80 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH59_80 PF00361 Proton-conducting membrane transporter CH59_800 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH59_800 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH59_800 PF14579 Helix-hairpin-helix motif CH59_800 PF01336 OB-fold nucleic acid binding domain CH59_800 PF02811 PHP domain CH59_801 PF01351 Ribonuclease HII CH59_802 PF02684 Lipid-A-disaccharide synthetase CH59_803 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CH59_803 PF00132 Bacterial transferase hexapeptide (six repeats) CH59_804 PF07977 FabA-like domain CH59_805 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CH59_805 PF00132 Bacterial transferase hexapeptide (six repeats) CH59_806 PF03938 Outer membrane protein (OmpH-like) CH59_807 PF01103 Surface antigen CH59_807 PF07244 Surface antigen variable number repeat CH59_808 PF17820 PDZ domain CH59_808 PF02163 Peptidase family M50 CH59_81 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CH59_810 PF01255 Putative undecaprenyl diphosphate synthase CH59_811 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CH59_811 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CH59_811 PF13288 DXP reductoisomerase C-terminal domain CH59_812 PF01765 Ribosome recycling factor CH59_813 PF00696 Amino acid kinase family CH59_814 PF00889 Elongation factor TS CH59_815 PF00318 Ribosomal protein S2 CH59_816 PF00557 Metallopeptidase family M24 CH59_817 PF01909 Nucleotidyltransferase domain CH59_817 PF01966 HD domain CH59_817 PF08335 GlnD PII-uridylyltransferase CH59_817 PF01842 ACT domain CH59_818 PF00132 Bacterial transferase hexapeptide (six repeats) CH59_818 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CH59_818 PF14602 Hexapeptide repeat of succinyl-transferase CH59_819 PF11944 Protein of unknown function (DUF3461) CH59_82 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CH59_820 PF00258 Flavodoxin CH59_821 PF00849 RNA pseudouridylate synthase CH59_822 PF04287 tRNA pseudouridine synthase C CH59_823 PF01797 Transposase IS200 like CH59_825 PF01797 Transposase IS200 like CH59_826 PF07348 Syd protein (SUKH-2) CH59_827 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CH59_827 PF14489 QueF-like protein CH59_828 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CH59_828 PF11892 Domain of unknown function (DUF3412) CH59_828 PF03641 Possible lysine decarboxylase CH59_829 PF01367 5'-3' exonuclease, C-terminal SAM fold CH59_829 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH59_83 PF12838 4Fe-4S dicluster domain CH59_830 PF01728 FtsJ-like methyltransferase CH59_830 PF18125 RlmM ferredoxin-like domain CH59_831 PF04241 Protein of unknown function (DUF423) CH59_832 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_832 PF03466 LysR substrate binding domain CH59_834 PF00266 Aminotransferase class-V CH59_835 PF02657 Fe-S metabolism associated domain CH59_836 PF00899 ThiF family CH59_837 PF03562 MltA specific insert domain CH59_837 PF06725 3D domain CH59_84 PF00146 NADH dehydrogenase CH59_840 PF01520 N-acetylmuramoyl-L-alanine amidase CH59_840 PF11741 AMIN domain CH59_841 PF00696 Amino acid kinase family CH59_841 PF00583 Acetyltransferase (GNAT) family CH59_842 PF13538 UvrD-like helicase C-terminal domain CH59_843 PF00580 UvrD/REP helicase N-terminal domain CH59_843 PF13361 UvrD-like helicase C-terminal domain CH59_843 PF12705 PD-(D/E)XK nuclease superfamily CH59_846 PF17946 RecC C-terminal domain CH59_85 PF01568 Molydopterin dinucleotide binding domain CH59_85 PF00384 Molybdopterin oxidoreductase CH59_85 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH59_85 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH59_850 PF01695 IstB-like ATP binding protein CH59_851 PF13193 AMP-binding enzyme C-terminal domain CH59_851 PF16197 Ketoacyl-synthetase C-terminal extension CH59_851 PF00550 Phosphopantetheine attachment site CH59_851 PF02801 Beta-ketoacyl synthase, C-terminal domain CH59_851 PF00202 Aminotransferase class-III CH59_851 PF00501 AMP-binding enzyme CH59_851 PF00109 Beta-ketoacyl synthase, N-terminal domain CH59_851 PF00668 Condensation domain CH59_852 PF00593 TonB dependent receptor CH59_852 PF07715 TonB-dependent Receptor Plug Domain CH59_853 PF07687 Peptidase dimerisation domain CH59_853 PF01546 Peptidase family M20/M25/M40 CH59_854 PF03806 AbgT putative transporter family CH59_855 PF14496 C-terminal novel E3 ligase, LRR-interacting CH59_855 PF12468 Type III secretion system leucine rich repeat protein CH59_856 PF14496 C-terminal novel E3 ligase, LRR-interacting CH59_856 PF12468 Type III secretion system leucine rich repeat protein CH59_856 PF14496 C-terminal novel E3 ligase, LRR-interacting CH59_856 PF12468 Type III secretion system leucine rich repeat protein CH59_857 PF12468 Type III secretion system leucine rich repeat protein CH59_857 PF14496 C-terminal novel E3 ligase, LRR-interacting CH59_86 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH59_86 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH59_86 PF10531 SLBB domain CH59_861 PF07906 ShET2 enterotoxin, N-terminal region CH59_862 PF00873 AcrB/AcrD/AcrF family CH59_863 PF00529 HlyD membrane-fusion protein of T1SS CH59_863 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH59_865 PF00563 EAL domain CH59_865 PF00990 Diguanylate cyclase, GGDEF domain CH59_865 PF03707 Bacterial signalling protein N terminal repeat CH59_865 PF13188 PAS domain CH59_866 PF13276 HTH-like domain CH59_866 PF13333 Integrase core domain CH59_866 PF00665 Integrase core domain CH59_869 PF00593 TonB dependent receptor CH59_869 PF07715 TonB-dependent Receptor Plug Domain CH59_870 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CH59_871 PF06276 Ferric iron reductase FhuF-like transporter CH59_871 PF04183 IucA / IucC family CH59_873 PF06276 Ferric iron reductase FhuF-like transporter CH59_873 PF04183 IucA / IucC family CH59_874 PF04183 IucA / IucC family CH59_874 PF06276 Ferric iron reductase FhuF-like transporter CH59_878 PF00765 Autoinducer synthase CH59_879 PF00196 Bacterial regulatory proteins, luxR family CH59_879 PF03472 Autoinducer binding domain CH59_88 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CH59_88 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CH59_881 PF02517 CPBP intramembrane metalloprotease CH59_883 PF03811 InsA N-terminal domain CH59_883 PF12759 InsA C-terminal domain CH59_89 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH59_890 PF00691 OmpA family CH59_890 PF05736 OprF membrane domain CH59_896 PF12759 InsA C-terminal domain CH59_896 PF03811 InsA N-terminal domain CH59_9 PF01867 CRISPR associated protein Cas1 CH59_90 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CH59_900 PF03811 InsA N-terminal domain CH59_900 PF12759 InsA C-terminal domain CH59_901 PF03400 IS1 transposase CH59_903 PF00589 Phage integrase family CH59_903 PF02899 Phage integrase, N-terminal SAM-like domain CH59_905 PF01276 Orn/Lys/Arg decarboxylase, major domain CH59_905 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH59_905 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH59_906 PF13407 Periplasmic binding protein domain CH59_907 PF00005 ABC transporter CH59_908 PF02653 Branched-chain amino acid transport system / permease component CH59_909 PF07715 TonB-dependent Receptor Plug Domain CH59_91 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_91 PF03466 LysR substrate binding domain CH59_911 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CH59_911 PF01464 Transglycosylase SLT domain CH59_912 PF04362 Bacterial Fe(2+) trafficking CH59_913 PF00633 Helix-hairpin-helix motif CH59_913 PF10576 Iron-sulfur binding domain of endonuclease III CH59_913 PF14815 NUDIX domain CH59_913 PF00730 HhH-GPD superfamily base excision DNA repair protein CH59_914 PF02390 Putative methyltransferase CH59_915 PF04320 Protein with unknown function (DUF469) CH59_916 PF04960 Glutaminase CH59_917 PF11101 Protein of unknown function (DUF2884) CH59_918 PF11101 Protein of unknown function (DUF2884) CH59_919 PF16671 Actin cross-linking domain CH59_919 PF12146 Serine aminopeptidase, S33 CH59_919 PF11647 Membrane Localization Domain CH59_919 PF11713 Peptidase C80 family CH59_919 PF07634 RtxA repeat CH59_92 PF00155 Aminotransferase class I and II CH59_920 PF06969 HemN C-terminal domain CH59_920 PF04055 Radical SAM superfamily CH59_921 PF01725 Ham1 family CH59_922 PF02594 Uncharacterised ACR, YggU family COG1872 CH59_923 PF02325 YGGT family CH59_924 PF14748 Pyrroline-5-carboxylate reductase dimerisation CH59_924 PF03807 NADP oxidoreductase coenzyme F420-dependent CH59_925 PF01168 Alanine racemase, N-terminal domain CH59_926 PF00437 Type II/IV secretion system protein CH59_927 PF04371 Porphyromonas-type peptidyl-arginine deiminase CH59_928 PF00795 Carbon-nitrogen hydrolase CH59_929 PF03652 Holliday junction resolvase CH59_930 PF02622 Uncharacterized ACR, COG1678 CH59_931 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CH59_931 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CH59_932 PF04452 RNA methyltransferase CH59_933 PF04231 Endonuclease I CH59_934 PF17283 SprT-like zinc ribbon domain CH59_934 PF10263 SprT-like family CH59_935 PF02772 S-adenosylmethionine synthetase, central domain CH59_935 PF00438 S-adenosylmethionine synthetase, N-terminal domain CH59_935 PF02773 S-adenosylmethionine synthetase, C-terminal domain CH59_937 PF17944 Arginine decarboxylase C-terminal helical extension CH59_937 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH59_937 PF17810 Arginine decarboxylase helical bundle domain CH59_939 PF01435 Peptidase family M48 CH59_94 PF03600 Citrate transporter CH59_94 PF02080 TrkA-C domain CH59_940 PF02779 Transketolase, pyrimidine binding domain CH59_940 PF02780 Transketolase, C-terminal domain CH59_940 PF00456 Transketolase, thiamine diphosphate binding domain CH59_941 PF01797 Transposase IS200 like CH59_942 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH59_942 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH59_943 PF00162 Phosphoglycerate kinase CH59_944 PF01116 Fructose-bisphosphate aldolase class-II CH59_945 PF00924 Mechanosensitive ion channel CH59_945 PF05552 Conserved TM helix CH59_946 PF01810 LysE type translocator CH59_947 PF04402 Protein of unknown function (DUF541) CH59_948 PF03466 LysR substrate binding domain CH59_948 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH59_949 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH59_95 PF13419 Haloacid dehalogenase-like hydrolase CH59_950 PF01842 ACT domain CH59_950 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH59_950 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH59_951 PF01812 5-formyltetrahydrofolate cyclo-ligase family CH59_952 PF05164 Cell division protein ZapA CH59_953 PF03695 Uncharacterised protein family (UPF0149) CH59_954 PF00557 Metallopeptidase family M24 CH59_954 PF05195 Aminopeptidase P, N-terminal domain CH59_955 PF01494 FAD binding domain CH59_956 PF01494 FAD binding domain CH59_957 PF01571 Aminomethyltransferase folate-binding domain CH59_957 PF08669 Glycine cleavage T-protein C-terminal barrel domain CH59_958 PF01597 Glycine cleavage H-protein CH59_959 PF02347 Glycine cleavage system P-protein CH59_96 PF03887 YfbU domain CH59_962 PF03895 YadA-like membrane anchor domain CH59_962 PF05658 Head domain of trimeric autotransporter adhesin CH59_962 PF13018 Extended Signal Peptide of Type V secretion system CH59_962 PF05662 Coiled stalk of trimeric autotransporter adhesin CH59_964 PF03006 Haemolysin-III related CH59_966 PF01571 Aminomethyltransferase folate-binding domain CH59_967 PF03937 Flavinator of succinate dehydrogenase CH59_968 PF00072 Response regulator receiver domain CH59_968 PF00486 Transcriptional regulatory protein, C terminal CH59_969 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH59_969 PF00512 His Kinase A (phospho-acceptor) domain CH59_969 PF00672 HAMP domain CH59_97 PF04217 Protein of unknown function, DUF412 CH59_970 PF06123 Inner membrane protein CreD CH59_971 PF00258 Flavodoxin CH59_972 PF02899 Phage integrase, N-terminal SAM-like domain CH59_972 PF00589 Phage integrase family CH59_973 PF13098 Thioredoxin-like domain CH59_973 PF10411 Disulfide bond isomerase protein N-terminus CH59_974 PF02272 DHHA1 domain CH59_974 PF17768 RecJ OB domain CH59_974 PF01368 DHH family CH59_975 PF00472 RF-1 domain CH59_975 PF03462 PCRF domain CH59_976 PF00152 tRNA synthetases class II (D, K and N) CH59_976 PF01336 OB-fold nucleic acid binding domain CH59_978 PF13356 Arm DNA-binding domain CH59_978 PF00589 Phage integrase family CH59_978 PF14659 Phage integrase, N-terminal SAM-like domain CH59_979 PF00665 Integrase core domain CH59_979 PF02796 Helix-turn-helix domain of resolvase CH59_98 PF00871 Acetokinase family CH59_980 PF01695 IstB-like ATP binding protein CH59_981 PF00589 Phage integrase family CH59_981 PF14659 Phage integrase, N-terminal SAM-like domain CH59_981 PF13356 Arm DNA-binding domain CH59_985 PF15723 Motility quorum-sensing regulator, toxin of MqsA CH59_986 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA CH59_99 PF01515 Phosphate acetyl/butaryl transferase CH59_99 PF07085 DRTGG domain