CH59_100 SM00382 ATPases associated with a variety of cellular activities CH59_1008 SM00382 ATPases associated with a variety of cellular activities CH59_1009 SM00382 ATPases associated with a variety of cellular activities CH59_1017 SM00354 helix_turn _helix lactose operon repressor CH59_1020 SM00354 helix_turn _helix lactose operon repressor CH59_103 SM01321 CH59_103 CH59_1036 SM00420 helix_turn_helix, Deoxyribose operon repressor CH59_1036 SM01134 CH59_1036 CH59_1038 SM01321 CH59_1038 CH59_104 SM00354 helix_turn _helix lactose operon repressor CH59_1040 SM00869 Autotransporter beta-domain CH59_1043 SM00947 Carbonic anhydrase CH59_1047 SM00382 ATPases associated with a variety of cellular activities CH59_1059 SM00862 Transcriptional regulatory protein, C terminal CH59_1062 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH59_1062 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH59_1062 SM00319 Homologues of the ligand binding domain of Tar CH59_1063 SM00849 Metallo-beta-lactamase superfamily CH59_1067 SM00354 helix_turn _helix lactose operon repressor CH59_1070 SM00563 Phosphate acyltransferases CH59_1075 SM00927 DNA mismatch repair enzyme MutH CH59_1077 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH59_1084 SM00382 ATPases associated with a variety of cellular activities CH59_1092 SM00382 ATPases associated with a variety of cellular activities CH59_1093 SM00382 ATPases associated with a variety of cellular activities CH59_1099 SM00869 Autotransporter beta-domain CH59_1100 SM00869 Autotransporter beta-domain CH59_1107 SM00354 helix_turn _helix lactose operon repressor CH59_1126 SM00862 Transcriptional regulatory protein, C terminal CH59_1136 SM01321 CH59_1136 CH59_114 SM00382 ATPases associated with a variety of cellular activities CH59_1142 SM00858 CH59_1142 CH59_1146 SM00382 ATPases associated with a variety of cellular activities CH59_1151 SM00382 ATPases associated with a variety of cellular activities CH59_1166 SM01321 CH59_1166 CH59_1167 SM01321 CH59_1167 CH59_1186 SM00342 helix_turn_helix, arabinose operon control protein CH59_119 SM00644 CH59_119 CH59_1192 SM00563 Phosphate acyltransferases CH59_1193 SM00434 DNA Topoisomerase IV CH59_1196 SM00387 Histidine kinase-like ATPases CH59_1196 SM00433 TopoisomeraseII CH59_120 SM00346 helix_turn_helix isocitrate lyase regulation CH59_1212 SM01118 CH59_1212 CH59_1213 SM00287 Bacterial SH3 domain homologues CH59_1214 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH59_1216 SM00905 Dihydroneopterin aldolase CH59_1217 SM01207 CH59_1217 CH59_1220 SM00400 zinc finger CH59_1220 SM00493 CH59_1220 CH59_1220 SM00766 DNA primase DnaG DnaB-binding CH59_1223 SM00382 ATPases associated with a variety of cellular activities CH59_1243 SM01321 CH59_1243 CH59_1249 SM01217 CH59_1249 CH59_1254 SM00354 helix_turn _helix lactose operon repressor CH59_1256 SM00382 ATPases associated with a variety of cellular activities CH59_1259 SM00869 Autotransporter beta-domain CH59_1267 SM00327 von Willebrand factor (vWF) type A domain CH59_1269 SM00327 von Willebrand factor (vWF) type A domain CH59_1270 SM00327 von Willebrand factor (vWF) type A domain CH59_1272 SM00220 Serine/Threonine protein kinases, catalytic domain CH59_1276 SM00869 Autotransporter beta-domain CH59_1283 SM00858 CH59_1283 CH59_1287 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH59_1287 SM00895 CH59_1287 CH59_1298 SM00382 ATPases associated with a variety of cellular activities CH59_130 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH59_130 SM00245 tail specific protease CH59_1300 SM00957 SecA DEAD-like domain CH59_1300 SM00958 SecA preprotein cross-linking domain CH59_1304 SM00864 Tubulin/FtsZ family, GTPase domain CH59_1304 SM00865 Tubulin/FtsZ family, C-terminal domain CH59_1305 SM00842 Cell division protein FtsA CH59_131 SM00945 ProQ/FINO family CH59_1320 SM00354 helix_turn _helix lactose operon repressor CH59_1321 SM01321 CH59_1321 CH59_1327 SM01321 CH59_1327 CH59_1328 SM00917 LeuA allosteric (dimerisation) domain CH59_1329 SM01329 CH59_1329 CH59_1334 SM00382 ATPases associated with a variety of cellular activities CH59_1340 SM00382 ATPases associated with a variety of cellular activities CH59_1342 SM00486 DNA polymerase type-B family CH59_1343 SM00487 DEAD-like helicases superfamily CH59_1343 SM00490 helicase superfamily c-terminal domain CH59_135 SM00972 Spore Coat Protein U domain CH59_1355 SM00382 ATPases associated with a variety of cellular activities CH59_1355 SM01086 C-terminal, D2-small domain, of ClpB protein CH59_136 SM00972 Spore Coat Protein U domain CH59_1365 SM00271 DnaJ molecular chaperone homology domain CH59_1369 SM00650 Ribosomal RNA adenine dimethylases CH59_137 SM00972 Spore Coat Protein U domain CH59_1373 SM01321 CH59_1373 CH59_1378 SM00851 MGS-like domain CH59_1378 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH59_1379 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CH59_1381 SM01321 CH59_1381 CH59_1386 SM00904 Riboflavin kinase CH59_1390 SM00271 DnaJ molecular chaperone homology domain CH59_1395 SM00852 Probable molybdopterin binding domain CH59_140 SM00972 Spore Coat Protein U domain CH59_1403 SM00448 cheY-homologous receiver domain CH59_1403 SM00862 Transcriptional regulatory protein, C terminal CH59_1406 SM00855 Phosphoglycerate mutase family CH59_1407 SM00342 helix_turn_helix, arabinose operon control protein CH59_1407 SM00871 Bacterial transcription activator, effector binding domain CH59_1411 SM00831 Cation transporter/ATPase, N-terminus CH59_1413 SM00267 diguanylate cyclase CH59_1416 SM00382 ATPases associated with a variety of cellular activities CH59_1418 SM00530 Helix-turn-helix XRE-family like proteins CH59_1419 SM00382 ATPases associated with a variety of cellular activities CH59_142 SM01022 CH59_142 CH59_1424 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CH59_1426 SM01133 CH59_1426 CH59_1431 SM00749 bacterial OsmY and nodulation domain CH59_1438 SM00267 diguanylate cyclase CH59_1449 SM00382 ATPases associated with a variety of cellular activities CH59_145 SM00382 ATPases associated with a variety of cellular activities CH59_1453 SM01133 CH59_1453 CH59_1459 SM00342 helix_turn_helix, arabinose operon control protein CH59_1474 SM00382 ATPases associated with a variety of cellular activities CH59_1476 SM00382 ATPases associated with a variety of cellular activities CH59_1480 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH59_1481 SM00316 Ribosomal protein S1-like RNA-binding domain CH59_1481 SM00357 Cold shock protein domain CH59_1481 SM00955 CH59_1481 CH59_1483 SM00788 Adenylosuccinate synthetase CH59_1485 SM00244 prohibitin homologues CH59_1486 SM00244 prohibitin homologues CH59_1490 SM00853 MutL C terminal dimerisation domain CH59_1490 SM01340 CH59_1490 CH59_1491 SM00257 Lysin motif CH59_1491 SM00646 CH59_1491 CH59_1497 SM00479 CH59_1497 CH59_1506 SM01321 CH59_1506 CH59_1508 SM00841 Elongation factor P, C-terminal CH59_1508 SM01185 CH59_1508 CH59_151 SM01005 Alanine racemase, C-terminal domain CH59_1511 SM00382 ATPases associated with a variety of cellular activities CH59_1515 SM00883 Chaperonin 10 Kd subunit CH59_1521 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH59_1526 SM01276 CH59_1526 CH59_1531 SM00342 helix_turn_helix, arabinose operon control protein CH59_1532 SM00342 helix_turn_helix, arabinose operon control protein CH59_1537 SM01007 Class II Aldolase and Adducin N-terminal domain CH59_1544 SM01005 Alanine racemase, C-terminal domain CH59_1545 SM00382 ATPases associated with a variety of cellular activities CH59_1546 SM00829 Enoylreductase CH59_1552 SM00563 Phosphate acyltransferases CH59_1555 SM00869 Autotransporter beta-domain CH59_1556 SM00060 Fibronectin type 3 domain CH59_156 SM00644 CH59_156 CH59_1575 SM00729 Elongator protein 3, MiaB family, Radical SAM CH59_158 SM00448 cheY-homologous receiver domain CH59_1582 SM00382 ATPases associated with a variety of cellular activities CH59_159 SM00448 cheY-homologous receiver domain CH59_1595 SM00382 ATPases associated with a variety of cellular activities CH59_160 SM00138 Methyltransferase, chemotaxis proteins CH59_1603 SM00342 helix_turn_helix, arabinose operon control protein CH59_1607 SM00387 Histidine kinase-like ATPases CH59_1607 SM00388 His Kinase A (phosphoacceptor) domain CH59_1607 SM00448 cheY-homologous receiver domain CH59_1608 SM00421 helix_turn_helix, Lux Regulon CH59_1608 SM00448 cheY-homologous receiver domain CH59_1615 SM00382 ATPases associated with a variety of cellular activities CH59_1624 SM00382 ATPases associated with a variety of cellular activities CH59_163 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH59_163 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH59_163 SM00319 Homologues of the ligand binding domain of Tar CH59_1633 SM00912 haemagglutination activity domain CH59_1634 SM01018 B12 binding domain CH59_1635 SM00346 helix_turn_helix isocitrate lyase regulation CH59_1652 SM00798 AICARFT/IMPCHase bienzyme CH59_1652 SM00851 MGS-like domain CH59_1653 SM01209 CH59_1653 CH59_1653 SM01210 CH59_1653 CH59_1655 SM00411 bacterial (prokaryotic) histone like domain CH59_166 SM00869 Autotransporter beta-domain CH59_1667 SM00876 Biotin and Thiamin Synthesis associated domain CH59_1668 SM01321 CH59_1668 CH59_1669 SM00663 RNA polymerase I subunit A N-terminus CH59_1675 SM00649 Ribosomal protein L11/L12 CH59_1676 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH59_1676 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH59_1683 SM00382 ATPases associated with a variety of cellular activities CH59_1697 SM01321 CH59_1697 CH59_1704 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH59_1704 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH59_1705 SM01004 Delta-aminolevulinic acid dehydratase CH59_1707 SM00382 ATPases associated with a variety of cellular activities CH59_171 SM00260 Two component signalling adaptor domain CH59_172 SM00073 Histidine Phosphotransfer domain CH59_172 SM00260 Two component signalling adaptor domain CH59_172 SM00387 Histidine kinase-like ATPases CH59_172 SM01231 CH59_172 CH59_1728 SM00382 ATPases associated with a variety of cellular activities CH59_1739 SM00382 ATPases associated with a variety of cellular activities CH59_1740 SM00382 ATPases associated with a variety of cellular activities CH59_1745 SM01321 CH59_1745 CH59_1748 SM00382 ATPases associated with a variety of cellular activities CH59_1749 SM00382 ATPases associated with a variety of cellular activities CH59_1749 SM00962 SRP54-type protein, GTPase domain CH59_1749 SM00963 SRP54-type protein, helical bundle domain CH59_1768 SM00341 Helicase and RNase D C-terminal CH59_1768 SM00487 DEAD-like helicases superfamily CH59_1768 SM00490 helicase superfamily c-terminal domain CH59_1768 SM00956 CH59_1768 CH59_177 SM00831 Cation transporter/ATPase, N-terminus CH59_1782 SM01219 CH59_1782 CH59_1788 SM01321 CH59_1788 CH59_1789 SM00382 ATPases associated with a variety of cellular activities CH59_179 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH59_179 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH59_179 SM00319 Homologues of the ligand binding domain of Tar CH59_18 SM00354 helix_turn _helix lactose operon repressor CH59_1806 SM00984 UDP binding domain CH59_1810 SM00357 Cold shock protein domain CH59_1810 SM00382 ATPases associated with a variety of cellular activities CH59_1810 SM00959 Rho termination factor, N-terminal domain CH59_1812 SM00487 DEAD-like helicases superfamily CH59_1812 SM00490 helicase superfamily c-terminal domain CH59_182 SM00357 Cold shock protein domain CH59_1826 SM00507 HNH nucleases CH59_183 SM01038 Beta galactosidase small chain CH59_184 SM00829 Enoylreductase CH59_1843 SM00382 ATPases associated with a variety of cellular activities CH59_1848 SM00382 ATPases associated with a variety of cellular activities CH59_186 SM00344 helix_turn_helix ASNC type CH59_1867 SM00382 ATPases associated with a variety of cellular activities CH59_1873 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH59_1877 SM00382 ATPases associated with a variety of cellular activities CH59_1888 SM00642 Alpha-amylase domain CH59_1889 SM00642 Alpha-amylase domain CH59_1891 SM00257 Lysin motif CH59_1891 SM00634 Bacterial Ig-like domain (group 1) CH59_1896 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH59_1903 SM00354 helix_turn _helix lactose operon repressor CH59_1906 SM00448 cheY-homologous receiver domain CH59_1906 SM00862 Transcriptional regulatory protein, C terminal CH59_1912 SM00382 ATPases associated with a variety of cellular activities CH59_1913 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH59_1913 SM00387 Histidine kinase-like ATPases CH59_1913 SM00388 His Kinase A (phosphoacceptor) domain CH59_1913 SM00448 cheY-homologous receiver domain CH59_1916 SM01321 CH59_1916 CH59_1920 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH59_1921 SM00235 Zinc-dependent metalloprotease CH59_193 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH59_193 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH59_1932 SM00869 Autotransporter beta-domain CH59_1936 SM00052 Putative diguanylate phosphodiesterase CH59_1945 SM00052 Putative diguanylate phosphodiesterase CH59_1945 SM00267 diguanylate cyclase CH59_1947 SM00382 ATPases associated with a variety of cellular activities CH59_1948 SM00382 ATPases associated with a variety of cellular activities CH59_195 SM00354 helix_turn _helix lactose operon repressor CH59_1954 SM00912 haemagglutination activity domain CH59_1958 SM00387 Histidine kinase-like ATPases CH59_196 SM01329 CH59_196 CH59_1964 SM00421 helix_turn_helix, Lux Regulon CH59_1964 SM00448 cheY-homologous receiver domain CH59_1978 SM00382 ATPases associated with a variety of cellular activities CH59_1980 SM00530 Helix-turn-helix XRE-family like proteins CH59_1987 SM00342 helix_turn_helix, arabinose operon control protein CH59_1989 SM00382 ATPases associated with a variety of cellular activities CH59_20 SM00382 ATPases associated with a variety of cellular activities CH59_2014 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH59_2017 SM01321 CH59_2017 CH59_2018 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH59_2018 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH59_2018 SM01358 CH59_2018 CH59_203 SM00448 cheY-homologous receiver domain CH59_203 SM00862 Transcriptional regulatory protein, C terminal CH59_2036 SM00642 Alpha-amylase domain CH59_204 SM00387 Histidine kinase-like ATPases CH59_204 SM00388 His Kinase A (phosphoacceptor) domain CH59_205 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CH59_2051 SM00387 Histidine kinase-like ATPases CH59_2051 SM00433 TopoisomeraseII CH59_2053 SM00480 DNA polymerase III beta subunit CH59_2054 SM00382 ATPases associated with a variety of cellular activities CH59_2054 SM00760 Bacterial dnaA protein helix-turn-helix domain CH59_2058 SM01234 CH59_2058 CH59_2068 SM00062 Bacterial periplasmic substrate-binding proteins CH59_2071 SM00382 ATPases associated with a variety of cellular activities CH59_2078 SM00382 ATPases associated with a variety of cellular activities CH59_2087 SM01228 CH59_2087 CH59_2089 SM00344 helix_turn_helix ASNC type CH59_2091 SM00327 von Willebrand factor (vWF) type A domain CH59_2093 SM00382 ATPases associated with a variety of cellular activities CH59_210 SM00382 ATPases associated with a variety of cellular activities CH59_2101 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH59_2101 SM00895 CH59_2101 CH59_2112 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH59_2112 SM00474 3'-5' exonuclease CH59_2112 SM00475 5'-3' exonuclease CH59_2112 SM00482 DNA polymerase A domain CH59_2113 SM01321 CH59_2113 CH59_2116 SM00729 Elongator protein 3, MiaB family, Radical SAM CH59_2117 SM00382 ATPases associated with a variety of cellular activities CH59_2117 SM00448 cheY-homologous receiver domain CH59_2118 SM00091 PAS domain CH59_2118 SM00387 Histidine kinase-like ATPases CH59_2118 SM00388 His Kinase A (phosphoacceptor) domain CH59_2119 SM01230 CH59_2119 CH59_212 SM00487 DEAD-like helicases superfamily CH59_212 SM00490 helicase superfamily c-terminal domain CH59_212 SM00982 CH59_212 CH59_212 SM01058 CarD-like/TRCF domain CH59_2124 SM00382 ATPases associated with a variety of cellular activities CH59_2130 SM00487 DEAD-like helicases superfamily CH59_2130 SM00490 helicase superfamily c-terminal domain CH59_2132 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH59_2132 SM00954 Region found in RelA / SpoT proteins CH59_2133 SM01409 CH59_2133 CH59_2134 SM00072 Guanylate kinase homologues. CH59_2135 SM00532 Ligase N family CH59_2146 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CH59_2146 SM01232 CH59_2146 CH59_215 SM00382 ATPases associated with a variety of cellular activities CH59_2154 SM00829 Enoylreductase CH59_2159 SM00450 Rhodanese Homology Domain CH59_2163 SM00971 Serine acetyltransferase, N-terminal CH59_2165 SM00342 helix_turn_helix, arabinose operon control protein CH59_2166 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH59_2166 SM00387 Histidine kinase-like ATPases CH59_2166 SM00388 His Kinase A (phosphoacceptor) domain CH59_2167 SM00448 cheY-homologous receiver domain CH59_2167 SM00862 Transcriptional regulatory protein, C terminal CH59_2187 SM01321 CH59_2187 CH59_2188 SM00382 ATPases associated with a variety of cellular activities CH59_2189 SM00382 ATPases associated with a variety of cellular activities CH59_2197 SM00382 ATPases associated with a variety of cellular activities CH59_2197 SM01086 C-terminal, D2-small domain, of ClpB protein CH59_2200 SM00354 helix_turn _helix lactose operon repressor CH59_2202 SM00487 DEAD-like helicases superfamily CH59_2202 SM00490 helicase superfamily c-terminal domain CH59_2212 SM00420 helix_turn_helix, Deoxyribose operon repressor CH59_2212 SM01134 CH59_2212 CH59_2214 SM00450 Rhodanese Homology Domain CH59_2215 SM00421 helix_turn_helix, Lux Regulon CH59_2225 SM00899 CH59_2225 CH59_2226 SM00316 Ribosomal protein S1-like RNA-binding domain CH59_2226 SM00732 Likely ribonuclease with RNase H fold. CH59_2228 SM00448 cheY-homologous receiver domain CH59_2228 SM00862 Transcriptional regulatory protein, C terminal CH59_2229 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH59_2229 SM00387 Histidine kinase-like ATPases CH59_2229 SM00388 His Kinase A (phosphoacceptor) domain CH59_2232 SM00363 S4 RNA-binding domain CH59_2257 SM00382 ATPases associated with a variety of cellular activities CH59_2260 SM00354 helix_turn _helix lactose operon repressor CH59_2267 SM00100 Cyclic nucleotide-monophosphate binding domain CH59_2267 SM00419 helix_turn_helix, cAMP Regulatory protein CH59_227 SM01321 CH59_227 CH59_2274 SM00062 Bacterial periplasmic substrate-binding proteins CH59_2275 SM00382 ATPases associated with a variety of cellular activities CH59_2280 SM00382 ATPases associated with a variety of cellular activities CH59_2294 SM00838 Elongation factor G C-terminus CH59_2294 SM00889 Elongation factor G, domain IV CH59_2296 SM01321 CH59_2296 CH59_2299 SM01403 CH59_2299 CH59_2303 SM01382 CH59_2303 CH59_2303 SM01383 CH59_2303 CH59_2306 SM00322 K homology RNA-binding domain CH59_2310 SM01374 CH59_2310 CH59_2311 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH59_2324 SM00363 S4 RNA-binding domain CH59_2324 SM01390 CH59_2324 CH59_2325 SM00662 RNA polymerases D CH59_2327 SM00422 helix_turn_helix, mercury resistance CH59_234 SM01321 CH59_234 CH59_235 SM00825 Beta-ketoacyl synthase CH59_2352 SM00382 ATPases associated with a variety of cellular activities CH59_2352 SM01086 C-terminal, D2-small domain, of ClpB protein CH59_2363 SM00860 SMI1 / KNR4 family CH59_2366 SM00530 Helix-turn-helix XRE-family like proteins CH59_237 SM00822 CH59_237 CH59_2374 SM00342 helix_turn_helix, arabinose operon control protein CH59_2377 SM01133 CH59_2377 CH59_2379 SM00062 Bacterial periplasmic substrate-binding proteins CH59_238 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH59_2382 SM00382 ATPases associated with a variety of cellular activities CH59_2389 SM00382 ATPases associated with a variety of cellular activities CH59_2397 SM01321 CH59_2397 CH59_2398 SM00357 Cold shock protein domain CH59_2399 SM00357 Cold shock protein domain CH59_2401 SM00849 Metallo-beta-lactamase superfamily CH59_2405 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH59_2405 SM00895 CH59_2405 CH59_2413 SM00878 Biotin carboxylase C-terminal domain CH59_2418 SM00829 Enoylreductase CH59_2419 SM00052 Putative diguanylate phosphodiesterase CH59_2419 SM00267 diguanylate cyclase CH59_2424 SM00316 Ribosomal protein S1-like RNA-binding domain CH59_244 SM01321 CH59_244 CH59_245 SM00363 S4 RNA-binding domain CH59_2452 SM00642 Alpha-amylase domain CH59_2454 SM00354 helix_turn _helix lactose operon repressor CH59_2456 SM00382 ATPases associated with a variety of cellular activities CH59_246 SM00316 Ribosomal protein S1-like RNA-binding domain CH59_2466 SM00382 ATPases associated with a variety of cellular activities CH59_247 SM00634 Bacterial Ig-like domain (group 1) CH59_2470 SM00116 Domain in cystathionine beta-synthase and other proteins. CH59_2472 SM00382 ATPases associated with a variety of cellular activities CH59_2479 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH59_2481 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH59_2491 SM00729 Elongator protein 3, MiaB family, Radical SAM CH59_2492 SM00073 Histidine Phosphotransfer domain CH59_2492 SM00091 PAS domain CH59_2492 SM00387 Histidine kinase-like ATPases CH59_2492 SM00388 His Kinase A (phosphoacceptor) domain CH59_2492 SM00448 cheY-homologous receiver domain CH59_2495 SM00749 bacterial OsmY and nodulation domain CH59_2503 SM00382 ATPases associated with a variety of cellular activities CH59_2519 SM00116 Domain in cystathionine beta-synthase and other proteins. CH59_2519 SM01091 Transporter associated domain CH59_253 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH59_2537 SM00387 Histidine kinase-like ATPases CH59_2537 SM00388 His Kinase A (phosphoacceptor) domain CH59_2538 SM00448 cheY-homologous receiver domain CH59_2538 SM00862 Transcriptional regulatory protein, C terminal CH59_2541 SM01103 CH59_2541 CH59_2543 SM00382 ATPases associated with a variety of cellular activities CH59_2550 SM00316 Ribosomal protein S1-like RNA-binding domain CH59_2550 SM00322 K homology RNA-binding domain CH59_2554 SM01387 CH59_2554 CH59_2557 SM00316 Ribosomal protein S1-like RNA-binding domain CH59_2557 SM00322 K homology RNA-binding domain CH59_2558 SM00028 Tetratricopeptide repeats CH59_2559 SM00487 DEAD-like helicases superfamily CH59_2559 SM00490 helicase superfamily c-terminal domain CH59_2561 SM00530 Helix-turn-helix XRE-family like proteins CH59_2577 SM00382 ATPases associated with a variety of cellular activities CH59_2580 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH59_2581 SM00849 Metallo-beta-lactamase superfamily CH59_2582 SM00072 Guanylate kinase homologues. CH59_2584 SM00382 ATPases associated with a variety of cellular activities CH59_2585 SM00382 ATPases associated with a variety of cellular activities CH59_2590 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH59_2590 SM00866 CH59_2590 CH59_2594 SM00382 ATPases associated with a variety of cellular activities CH59_2595 SM00382 ATPases associated with a variety of cellular activities CH59_2613 SM00382 ATPases associated with a variety of cellular activities CH59_2616 SM01321 CH59_2616 CH59_2620 SM01240 CH59_2620 CH59_2625 SM00644 CH59_2625 CH59_2628 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH59_2628 SM00895 CH59_2628 CH59_263 SM00421 helix_turn_helix, Lux Regulon CH59_263 SM00448 cheY-homologous receiver domain CH59_2632 SM01321 CH59_2632 CH59_2641 SM00947 Carbonic anhydrase CH59_2642 SM00382 ATPases associated with a variety of cellular activities CH59_2654 SM00487 DEAD-like helicases superfamily CH59_2654 SM00490 helicase superfamily c-terminal domain CH59_2654 SM00847 Helicase associated domain (HA2) Add an annotation CH59_2656 SM00382 ATPases associated with a variety of cellular activities CH59_2665 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH59_2666 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH59_2667 SM00073 Histidine Phosphotransfer domain CH59_2667 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH59_2667 SM00387 Histidine kinase-like ATPases CH59_2667 SM00388 His Kinase A (phosphoacceptor) domain CH59_2667 SM00448 cheY-homologous receiver domain CH59_2668 SM00954 Region found in RelA / SpoT proteins CH59_2671 SM01192 CH59_2671 CH59_2671 SM01193 CH59_2671 CH59_2693 SM00257 Lysin motif CH59_2695 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CH59_2695 SM00534 ATPase domain of DNA mismatch repair MUTS family CH59_2697 SM00829 Enoylreductase CH59_2700 SM01120 CH59_2700 CH59_2703 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH59_2706 SM00062 Bacterial periplasmic substrate-binding proteins CH59_2707 SM01235 CH59_2707 CH59_2719 SM00382 ATPases associated with a variety of cellular activities CH59_2720 SM01321 CH59_2720 CH59_2722 SM00420 helix_turn_helix, Deoxyribose operon repressor CH59_2722 SM01134 CH59_2722 CH59_2723 SM01007 Class II Aldolase and Adducin N-terminal domain CH59_2724 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH59_2733 SM00382 ATPases associated with a variety of cellular activities CH59_2736 SM00861 Transketolase, pyrimidine binding domain CH59_2742 SM00382 ATPases associated with a variety of cellular activities CH59_2744 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH59_2754 SM01321 CH59_2754 CH59_2755 SM01321 CH59_2755 CH59_2756 SM01091 Transporter associated domain CH59_2758 SM00382 ATPases associated with a variety of cellular activities CH59_2758 SM00962 SRP54-type protein, GTPase domain CH59_2758 SM00963 SRP54-type protein, helical bundle domain CH59_2763 SM01321 CH59_2763 CH59_2768 SM00448 cheY-homologous receiver domain CH59_2768 SM00850 LytTr DNA-binding domain CH59_2770 SM00830 Chorismate mutase type II CH59_2776 SM00830 Chorismate mutase type II CH59_2777 SM01321 CH59_2777 CH59_2780 SM00363 S4 RNA-binding domain CH59_2782 SM00382 ATPases associated with a variety of cellular activities CH59_2782 SM01086 C-terminal, D2-small domain, of ClpB protein CH59_2790 SM00155 Phospholipase D. Active site motifs. CH59_2791 SM00881 CoA binding domain CH59_2792 SM01144 CH59_2792 CH59_2794 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH59_2797 SM00347 helix_turn_helix multiple antibiotic resistance protein CH59_28 SM00912 haemagglutination activity domain CH59_2805 SM00062 Bacterial periplasmic substrate-binding proteins CH59_2808 SM00382 ATPases associated with a variety of cellular activities CH59_2823 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH59_2828 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CH59_2838 SM00900 CH59_2838 CH59_284 SM00382 ATPases associated with a variety of cellular activities CH59_2847 SM00710 Parallel beta-helix repeats CH59_2847 SM00912 haemagglutination activity domain CH59_285 SM00382 ATPases associated with a variety of cellular activities CH59_2852 SM00382 ATPases associated with a variety of cellular activities CH59_2855 SM00448 cheY-homologous receiver domain CH59_2855 SM00862 Transcriptional regulatory protein, C terminal CH59_2856 SM00091 PAS domain CH59_2856 SM00387 Histidine kinase-like ATPases CH59_2856 SM00388 His Kinase A (phosphoacceptor) domain CH59_2860 SM01321 CH59_2860 CH59_2861 SM00642 Alpha-amylase domain CH59_2865 SM01321 CH59_2865 CH59_2870 SM01323 CH59_2870 CH59_2873 SM01321 CH59_2873 CH59_2882 SM01321 CH59_2882 CH59_2883 SM00861 Transketolase, pyrimidine binding domain CH59_2886 SM00981 CH59_2886 CH59_2903 SM00382 ATPases associated with a variety of cellular activities CH59_2903 SM00994 ClpX C4-type zinc finger CH59_2903 SM01086 C-terminal, D2-small domain, of ClpB protein CH59_2904 SM00382 ATPases associated with a variety of cellular activities CH59_2904 SM00464 Found in ATP-dependent protease La (LON) CH59_2905 SM00411 bacterial (prokaryotic) histone like domain CH59_2907 SM01321 CH59_2907 CH59_2915 SM00344 helix_turn_helix ASNC type CH59_2916 SM00382 ATPases associated with a variety of cellular activities CH59_2917 SM00382 ATPases associated with a variety of cellular activities CH59_2918 SM00938 Nitrogen regulatory protein P-II CH59_2941 SM00382 ATPases associated with a variety of cellular activities CH59_2943 SM00382 ATPases associated with a variety of cellular activities CH59_2945 SM00493 CH59_2945 CH59_2946 SM00387 Histidine kinase-like ATPases CH59_297 SM01350 CH59_297 CH59_2981 SM00422 helix_turn_helix, mercury resistance CH59_2983 SM00244 prohibitin homologues CH59_2985 SM00822 CH59_2985 CH59_2987 SM00382 ATPases associated with a variety of cellular activities CH59_2990 SM01001 AIR carboxylase CH59_2993 SM00840 CH59_2993 CH59_2995 SM01321 CH59_2995 CH59_3005 SM01130 CH59_3005 CH59_3007 SM01321 CH59_3007 CH59_3019 SM00382 ATPases associated with a variety of cellular activities CH59_3022 SM00382 ATPases associated with a variety of cellular activities CH59_3029 SM00421 helix_turn_helix, Lux Regulon CH59_3029 SM00448 cheY-homologous receiver domain CH59_3032 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH59_3036 SM00919 Malic enzyme, NAD binding domain CH59_3036 SM01274 CH59_3036 CH59_3042 SM00869 Autotransporter beta-domain CH59_3046 SM01130 CH59_3046 CH59_3048 SM00364 Leucine-rich repeats, bacterial type CH59_305 SM00382 ATPases associated with a variety of cellular activities CH59_3056 SM00382 ATPases associated with a variety of cellular activities CH59_3059 SM00448 cheY-homologous receiver domain CH59_3059 SM00862 Transcriptional regulatory protein, C terminal CH59_3060 SM00387 Histidine kinase-like ATPases CH59_3060 SM00388 His Kinase A (phosphoacceptor) domain CH59_3061 SM00327 von Willebrand factor (vWF) type A domain CH59_3067 SM00450 Rhodanese Homology Domain CH59_3068 SM00382 ATPases associated with a variety of cellular activities CH59_307 SM01006 Siderophore biosynthesis protein domain CH59_3070 SM00448 cheY-homologous receiver domain CH59_3070 SM00862 Transcriptional regulatory protein, C terminal CH59_3071 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH59_3071 SM00387 Histidine kinase-like ATPases CH59_3071 SM00388 His Kinase A (phosphoacceptor) domain CH59_3073 SM01321 CH59_3073 CH59_3079 SM00771 ZipA, C-terminal domain (FtsZ-binding) CH59_3080 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH59_3080 SM00292 breast cancer carboxy-terminal domain CH59_3080 SM00532 Ligase N family CH59_3087 SM01321 CH59_3087 CH59_311 SM01091 Transporter associated domain CH59_3111 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH59_3115 SM00382 ATPases associated with a variety of cellular activities CH59_3119 SM00421 helix_turn_helix, Lux Regulon CH59_3128 SM00382 ATPases associated with a variety of cellular activities CH59_3128 SM01086 C-terminal, D2-small domain, of ClpB protein CH59_3142 SM00382 ATPases associated with a variety of cellular activities CH59_3145 SM01321 CH59_3145 CH59_3151 SM00062 Bacterial periplasmic substrate-binding proteins CH59_3152 SM01211 CH59_3152 CH59_3156 SM01321 CH59_3156 CH59_3158 SM00387 Histidine kinase-like ATPases CH59_3158 SM00388 His Kinase A (phosphoacceptor) domain CH59_3160 SM00382 ATPases associated with a variety of cellular activities CH59_3160 SM00448 cheY-homologous receiver domain CH59_3162 SM00938 Nitrogen regulatory protein P-II CH59_317 SM01321 CH59_317 CH59_3172 SM01321 CH59_3172 CH59_3179 SM00271 DnaJ molecular chaperone homology domain CH59_3187 SM00869 Autotransporter beta-domain CH59_3188 SM00247 Beta/gamma crystallins CH59_3189 SM00562 CH59_3189 CH59_319 SM00382 ATPases associated with a variety of cellular activities CH59_3191 SM00028 Tetratricopeptide repeats CH59_3192 SM00530 Helix-turn-helix XRE-family like proteins CH59_3196 SM00564 beta-propeller repeat CH59_3201 SM00116 Domain in cystathionine beta-synthase and other proteins. CH59_3201 SM01240 CH59_3201 CH59_3203 SM01321 CH59_3203 CH59_3217 SM00046 Diacylglycerol kinase catalytic domain (presumed) CH59_3220 SM00448 cheY-homologous receiver domain CH59_3220 SM00862 Transcriptional regulatory protein, C terminal CH59_3221 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH59_3221 SM00388 His Kinase A (phosphoacceptor) domain CH59_3226 SM00382 ATPases associated with a variety of cellular activities CH59_3227 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH59_3233 SM00924 MgtE intracellular N domain CH59_3238 SM00382 ATPases associated with a variety of cellular activities CH59_3256 SM00563 Phosphate acyltransferases CH59_3258 SM00195 Dual specificity phosphatase, catalytic domain CH59_3258 SM00404 Protein tyrosine phosphatase, catalytic domain motif CH59_3261 SM00382 ATPases associated with a variety of cellular activities CH59_3265 SM00382 ATPases associated with a variety of cellular activities CH59_327 SM00919 Malic enzyme, NAD binding domain CH59_327 SM01274 CH59_327 CH59_3270 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH59_3270 SM00866 CH59_3270 CH59_33 SM01329 CH59_33 CH59_330 SM00382 ATPases associated with a variety of cellular activities CH59_3300 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH59_3300 SM00465 GIY-YIG type nucleases (URI domain) CH59_3301 SM00421 helix_turn_helix, Lux Regulon CH59_3301 SM00448 cheY-homologous receiver domain CH59_3318 SM00382 ATPases associated with a variety of cellular activities CH59_3320 SM00062 Bacterial periplasmic substrate-binding proteins CH59_3320 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH59_3328 SM00342 helix_turn_helix, arabinose operon control protein CH59_3331 SM00478 endonuclease III CH59_3338 SM00382 ATPases associated with a variety of cellular activities CH59_3352 SM00382 ATPases associated with a variety of cellular activities CH59_3355 SM01007 Class II Aldolase and Adducin N-terminal domain CH59_3359 SM00047 Lysozyme subfamily 2 CH59_336 SM00829 Enoylreductase CH59_3368 SM00858 CH59_3368 CH59_3371 SM00634 Bacterial Ig-like domain (group 1) CH59_3372 SM01321 CH59_3372 CH59_3378 SM00382 ATPases associated with a variety of cellular activities CH59_3389 SM01022 CH59_3389 CH59_3391 SM00487 DEAD-like helicases superfamily CH59_3391 SM00490 helicase superfamily c-terminal domain CH59_3397 SM00903 Flavin reductase like domain CH59_3407 SM00347 helix_turn_helix multiple antibiotic resistance protein CH59_3408 SM01091 Transporter associated domain CH59_341 SM00382 ATPases associated with a variety of cellular activities CH59_3415 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH59_3415 SM00091 PAS domain CH59_3415 SM00267 diguanylate cyclase CH59_3419 SM00357 Cold shock protein domain CH59_3429 SM00342 helix_turn_helix, arabinose operon control protein CH59_343 SM00852 Probable molybdopterin binding domain CH59_3431 SM00382 ATPases associated with a variety of cellular activities CH59_3432 SM00090 RIO-like kinase CH59_3437 SM00382 ATPases associated with a variety of cellular activities CH59_3440 SM00354 helix_turn _helix lactose operon repressor CH59_3443 SM01359 CH59_3443 CH59_3443 SM01360 CH59_3443 CH59_3461 SM00382 ATPases associated with a variety of cellular activities CH59_3466 SM00421 helix_turn_helix, Lux Regulon CH59_3468 SM00357 Cold shock protein domain CH59_347 SM00382 ATPases associated with a variety of cellular activities CH59_3471 SM00729 Elongator protein 3, MiaB family, Radical SAM CH59_3474 SM00936 Penicillin-binding protein 5, C-terminal domain CH59_3485 SM00382 ATPases associated with a variety of cellular activities CH59_3488 SM00062 Bacterial periplasmic substrate-binding proteins CH59_3490 SM00116 Domain in cystathionine beta-synthase and other proteins. CH59_3490 SM01091 Transporter associated domain CH59_3493 SM00729 Elongator protein 3, MiaB family, Radical SAM CH59_35 SM00354 helix_turn _helix lactose operon repressor CH59_3506 SM01321 CH59_3506 CH59_3508 SM01321 CH59_3508 CH59_3511 SM01081 Putative carbohydrate binding domain CH59_3521 SM00382 ATPases associated with a variety of cellular activities CH59_3526 SM00382 ATPases associated with a variety of cellular activities CH59_3538 SM00357 Cold shock protein domain CH59_3542 SM00382 ATPases associated with a variety of cellular activities CH59_3543 SM00382 ATPases associated with a variety of cellular activities CH59_3548 SM00988 UreE urease accessory protein, N-terminal domain CH59_3561 SM00342 helix_turn_helix, arabinose operon control protein CH59_3570 SM00448 cheY-homologous receiver domain CH59_3570 SM00862 Transcriptional regulatory protein, C terminal CH59_3571 SM00387 Histidine kinase-like ATPases CH59_3571 SM00388 His Kinase A (phosphoacceptor) domain CH59_3581 SM00796 Allophanate hydrolase subunit 1 CH59_3582 SM00797 Allophanate hydrolase subunit 2 CH59_3587 SM00986 Uracil DNA glycosylase superfamily CH59_3587 SM00987 UreE urease accessory protein, C-terminal domain CH59_3591 SM00248 ankyrin repeats CH59_3593 SM00487 DEAD-like helicases superfamily CH59_3593 SM00490 helicase superfamily c-terminal domain CH59_3603 SM00358 Double-stranded RNA binding motif CH59_3603 SM00535 Ribonuclease III family CH59_3607 SM00382 ATPases associated with a variety of cellular activities CH59_3621 SM00382 ATPases associated with a variety of cellular activities CH59_3635 SM00855 Phosphoglycerate mutase family CH59_3636 SM00463 Small MutS-related domain CH59_3644 SM00825 Beta-ketoacyl synthase CH59_3649 SM00342 helix_turn_helix, arabinose operon control protein CH59_3651 SM01321 CH59_3651 CH59_3652 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH59_366 SM00382 ATPases associated with a variety of cellular activities CH59_366 SM01086 C-terminal, D2-small domain, of ClpB protein CH59_3661 SM00062 Bacterial periplasmic substrate-binding proteins CH59_3664 SM00382 ATPases associated with a variety of cellular activities CH59_3666 SM00052 Putative diguanylate phosphodiesterase CH59_3679 SM00869 Autotransporter beta-domain CH59_3685 SM01217 CH59_3685 CH59_3692 SM00382 ATPases associated with a variety of cellular activities CH59_37 SM00382 ATPases associated with a variety of cellular activities CH59_3704 SM00822 CH59_3704 CH59_3704 SM00823 Phosphopantetheine attachment site CH59_3704 SM00824 Thioesterase CH59_3704 SM00825 Beta-ketoacyl synthase CH59_3704 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH59_3705 SM00823 Phosphopantetheine attachment site CH59_3706 SM00342 helix_turn_helix, arabinose operon control protein CH59_3707 SM00382 ATPases associated with a variety of cellular activities CH59_3708 SM00382 ATPases associated with a variety of cellular activities CH59_3720 SM00421 helix_turn_helix, Lux Regulon CH59_3720 SM00448 cheY-homologous receiver domain CH59_3734 SM00420 helix_turn_helix, Deoxyribose operon repressor CH59_3734 SM01134 CH59_3734 CH59_3743 SM00382 ATPases associated with a variety of cellular activities CH59_3756 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH59_3756 SM00387 Histidine kinase-like ATPases CH59_376 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH59_3780 SM00382 ATPases associated with a variety of cellular activities CH59_3780 SM00487 DEAD-like helicases superfamily CH59_3780 SM00490 helicase superfamily c-terminal domain CH59_3780 SM00847 Helicase associated domain (HA2) Add an annotation CH59_3782 SM00530 Helix-turn-helix XRE-family like proteins CH59_3783 SM00020 Trypsin-like serine protease CH59_3786 SM00867 YceI-like domain CH59_3789 SM01321 CH59_3789 CH59_3791 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH59_3791 SM00387 Histidine kinase-like ATPases CH59_3791 SM00388 His Kinase A (phosphoacceptor) domain CH59_3792 SM00448 cheY-homologous receiver domain CH59_3792 SM00862 Transcriptional regulatory protein, C terminal CH59_3796 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CH59_3796 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CH59_3799 SM00100 Cyclic nucleotide-monophosphate binding domain CH59_3799 SM00419 helix_turn_helix, cAMP Regulatory protein CH59_3801 SM00098 Alkaline phosphatase homologues CH59_3818 SM00354 helix_turn _helix lactose operon repressor CH59_3829 SM00530 Helix-turn-helix XRE-family like proteins CH59_384 SM00825 Beta-ketoacyl synthase CH59_3843 SM00530 Helix-turn-helix XRE-family like proteins CH59_3859 SM00382 ATPases associated with a variety of cellular activities CH59_3863 SM00342 helix_turn_helix, arabinose operon control protein CH59_3865 SM00382 ATPases associated with a variety of cellular activities CH59_3870 SM00382 ATPases associated with a variety of cellular activities CH59_3878 SM00342 helix_turn_helix, arabinose operon control protein CH59_3880 SM00900 CH59_3880 CH59_3882 SM00478 endonuclease III CH59_3882 SM00525 CH59_3882 CH59_3885 SM00357 Cold shock protein domain CH59_3885 SM00955 CH59_3885 CH59_3890 SM01007 Class II Aldolase and Adducin N-terminal domain CH59_3893 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CH59_3895 SM00028 Tetratricopeptide repeats CH59_3897 SM00014 Acid phosphatase homologues CH59_39 SM00829 Enoylreductase CH59_3902 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH59_3902 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH59_3902 SM00493 CH59_3902 CH59_3906 SM00822 CH59_3906 CH59_3908 SM00363 S4 RNA-binding domain CH59_3910 SM00481 DNA polymerase alpha chain like domain CH59_3917 SM00749 bacterial OsmY and nodulation domain CH59_3931 SM00155 Phospholipase D. Active site motifs. CH59_3934 SM00382 ATPases associated with a variety of cellular activities CH59_3935 SM00382 ATPases associated with a variety of cellular activities CH59_3943 SM00382 ATPases associated with a variety of cellular activities CH59_3945 SM00528 Domain in histone-like proteins of HNS family CH59_3946 SM00984 UDP binding domain CH59_3947 SM00448 cheY-homologous receiver domain CH59_3958 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH59_3958 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH59_3958 SM00493 CH59_3958 CH59_396 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH59_3962 SM00870 CH59_3962 CH59_3966 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH59_3969 SM00763 PrkA AAA domain CH59_397 SM00992 Hemimethylated DNA-binding protein YccV like CH59_3977 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH59_398 SM00881 CoA binding domain CH59_3989 SM00060 Fibronectin type 3 domain CH59_3995 SM01040 BRO family, N-terminal domain CH59_3999 SM00232 JAB/MPN domain CH59_400 SM00851 MGS-like domain CH59_4001 SM01321 CH59_4001 CH59_4005 SM00635 Bacterial Ig-like domain 2 CH59_4011 SM00635 Bacterial Ig-like domain 2 CH59_4031 SM01040 BRO family, N-terminal domain CH59_4037 SM00382 ATPases associated with a variety of cellular activities CH59_4047 SM00341 Helicase and RNase D C-terminal CH59_4047 SM00474 3'-5' exonuclease CH59_4051 SM00487 DEAD-like helicases superfamily CH59_4051 SM00491 CH59_4051 CH59_4061 SM00257 Lysin motif CH59_4063 SM00382 ATPases associated with a variety of cellular activities CH59_4065 SM00382 ATPases associated with a variety of cellular activities CH59_4066 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH59_4077 SM00836 DALR anticodon binding domain CH59_4077 SM01016 Arginyl tRNA synthetase N terminal dom CH59_4079 SM00912 haemagglutination activity domain CH59_4087 SM00481 DNA polymerase alpha chain like domain CH59_4092 SM01321 CH59_4092 CH59_4101 SM00382 ATPases associated with a variety of cellular activities CH59_4103 SM01321 CH59_4103 CH59_4108 SM00937 CH59_4108 CH59_4112 SM01400 CH59_4112 CH59_4118 SM00450 Rhodanese Homology Domain CH59_4125 SM00448 cheY-homologous receiver domain CH59_4125 SM00862 Transcriptional regulatory protein, C terminal CH59_4126 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH59_4126 SM00387 Histidine kinase-like ATPases CH59_4126 SM00388 His Kinase A (phosphoacceptor) domain CH59_4137 SM00671 Sel1-like repeats. CH59_4139 SM00671 Sel1-like repeats. CH59_4157 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH59_4157 SM00866 CH59_4157 CH59_416 SM00825 Beta-ketoacyl synthase CH59_4160 SM00382 ATPases associated with a variety of cellular activities CH59_4164 SM00890 Domain of unknown function CH59_4168 SM00422 helix_turn_helix, mercury resistance CH59_417 SM01321 CH59_417 CH59_4172 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH59_4174 SM01321 CH59_4174 CH59_4175 SM00091 PAS domain CH59_4175 SM00382 ATPases associated with a variety of cellular activities CH59_4177 SM00953 CH59_4177 CH59_4184 SM00382 ATPases associated with a variety of cellular activities CH59_4189 SM00382 ATPases associated with a variety of cellular activities CH59_4190 SM00382 ATPases associated with a variety of cellular activities CH59_4198 SM00363 S4 RNA-binding domain CH59_4203 SM00347 helix_turn_helix multiple antibiotic resistance protein CH59_421 SM00382 ATPases associated with a variety of cellular activities CH59_4211 SM00479 CH59_4211 CH59_4217 SM00354 helix_turn _helix lactose operon repressor CH59_422 SM00981 CH59_422 CH59_4227 SM01321 CH59_4227 CH59_4237 SM00382 ATPases associated with a variety of cellular activities CH59_4257 SM00382 ATPases associated with a variety of cellular activities CH59_4261 SM00411 bacterial (prokaryotic) histone like domain CH59_4262 SM00873 B3/4 domain CH59_4262 SM00874 tRNA synthetase B5 domain CH59_4262 SM00896 Ferredoxin-fold anticodon binding domain CH59_4267 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH59_4273 SM00382 ATPases associated with a variety of cellular activities CH59_4282 SM00421 helix_turn_helix, Lux Regulon CH59_4284 SM00450 Rhodanese Homology Domain CH59_4287 SM00421 helix_turn_helix, Lux Regulon CH59_4291 SM00232 JAB/MPN domain CH59_4296 SM00635 Bacterial Ig-like domain 2 CH59_4302 SM00635 Bacterial Ig-like domain 2 CH59_431 SM00849 Metallo-beta-lactamase superfamily CH59_4311 SM00382 ATPases associated with a variety of cellular activities CH59_4312 SM00470 ParB-like nuclease domain CH59_4313 SM00470 ParB-like nuclease domain CH59_4314 SM00487 DEAD-like helicases superfamily CH59_4314 SM00490 helicase superfamily c-terminal domain CH59_4323 SM01321 CH59_4323 CH59_4329 SM00062 Bacterial periplasmic substrate-binding proteins CH59_4338 SM00244 prohibitin homologues CH59_4342 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH59_4342 SM00475 5'-3' exonuclease CH59_4353 SM00470 ParB-like nuclease domain CH59_4361 SM00382 ATPases associated with a variety of cellular activities CH59_4362 SM00470 ParB-like nuclease domain CH59_4366 SM00857 Resolvase, N terminal domain CH59_4370 SM00155 Phospholipase D. Active site motifs. CH59_4375 SM00342 helix_turn_helix, arabinose operon control protein CH59_4385 SM00481 DNA polymerase alpha chain like domain CH59_4387 SM00382 ATPases associated with a variety of cellular activities CH59_4398 SM00342 helix_turn_helix, arabinose operon control protein CH59_4415 SM00194 Protein tyrosine phosphatase, catalytic domain CH59_4415 SM00404 Protein tyrosine phosphatase, catalytic domain motif CH59_4418 SM00220 Serine/Threonine protein kinases, catalytic domain CH59_442 SM00357 Cold shock protein domain CH59_443 SM01150 CH59_443 CH59_4439 SM00857 Resolvase, N terminal domain CH59_4448 SM00382 ATPases associated with a variety of cellular activities CH59_445 SM00382 ATPases associated with a variety of cellular activities CH59_4456 SM00470 ParB-like nuclease domain CH59_446 SM00849 Metallo-beta-lactamase superfamily CH59_4466 SM00364 Leucine-rich repeats, bacterial type CH59_447 SM00411 bacterial (prokaryotic) histone like domain CH59_4485 SM00530 Helix-turn-helix XRE-family like proteins CH59_4488 SM00382 ATPases associated with a variety of cellular activities CH59_449 SM00316 Ribosomal protein S1-like RNA-binding domain CH59_455 SM00870 CH59_455 CH59_463 SM00382 ATPases associated with a variety of cellular activities CH59_466 SM00843 CH59_466 CH59_467 SM00344 helix_turn_helix ASNC type CH59_469 SM00382 ATPases associated with a variety of cellular activities CH59_470 SM00382 ATPases associated with a variety of cellular activities CH59_472 SM00316 Ribosomal protein S1-like RNA-binding domain CH59_473 SM01321 CH59_473 CH59_474 SM00382 ATPases associated with a variety of cellular activities CH59_474 SM01086 C-terminal, D2-small domain, of ClpB protein CH59_476 SM00357 Cold shock protein domain CH59_477 SM00382 ATPases associated with a variety of cellular activities CH59_489 SM00830 Chorismate mutase type II CH59_49 SM00062 Bacterial periplasmic substrate-binding proteins CH59_49 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH59_490 SM00382 ATPases associated with a variety of cellular activities CH59_491 SM00062 Bacterial periplasmic substrate-binding proteins CH59_491 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH59_497 SM00382 ATPases associated with a variety of cellular activities CH59_501 SM00244 prohibitin homologues CH59_503 SM00062 Bacterial periplasmic substrate-binding proteins CH59_504 SM00382 ATPases associated with a variety of cellular activities CH59_51 SM00382 ATPases associated with a variety of cellular activities CH59_512 SM00382 ATPases associated with a variety of cellular activities CH59_519 SM00014 Acid phosphatase homologues CH59_52 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH59_52 SM00091 PAS domain CH59_52 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH59_520 SM01133 CH59_520 CH59_521 SM00420 helix_turn_helix, Deoxyribose operon repressor CH59_521 SM01134 CH59_521 CH59_523 SM00936 Penicillin-binding protein 5, C-terminal domain CH59_525 SM00382 ATPases associated with a variety of cellular activities CH59_525 SM00930 CH59_525 CH59_531 SM00382 ATPases associated with a variety of cellular activities CH59_538 SM00518 AP endonuclease family 2 CH59_543 SM00862 Transcriptional regulatory protein, C terminal CH59_549 SM00382 ATPases associated with a variety of cellular activities CH59_55 SM00382 ATPases associated with a variety of cellular activities CH59_559 SM00841 Elongation factor P, C-terminal CH59_559 SM01185 CH59_559 CH59_562 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH59_562 SM00895 CH59_562 CH59_564 SM00833 Cobalamin synthesis protein cobW C-terminal domain CH59_565 SM00014 Acid phosphatase homologues CH59_568 SM00052 Putative diguanylate phosphodiesterase CH59_572 SM00382 ATPases associated with a variety of cellular activities CH59_575 SM00363 S4 RNA-binding domain CH59_576 SM00487 DEAD-like helicases superfamily CH59_576 SM00490 helicase superfamily c-terminal domain CH59_578 SM01321 CH59_578 CH59_60 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH59_607 SM00420 helix_turn_helix, Deoxyribose operon repressor CH59_607 SM01134 CH59_607 CH59_608 SM01007 Class II Aldolase and Adducin N-terminal domain CH59_611 SM00530 Helix-turn-helix XRE-family like proteins CH59_614 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH59_614 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH59_620 SM01321 CH59_620 CH59_626 SM00421 helix_turn_helix, Lux Regulon CH59_626 SM00448 cheY-homologous receiver domain CH59_627 SM00387 Histidine kinase-like ATPases CH59_627 SM00388 His Kinase A (phosphoacceptor) domain CH59_627 SM00448 cheY-homologous receiver domain CH59_628 SM00434 DNA Topoisomerase IV CH59_634 SM00852 Probable molybdopterin binding domain CH59_637 SM01060 CH59_637 CH59_638 SM00487 DEAD-like helicases superfamily CH59_638 SM00488 CH59_638 CH59_638 SM00491 CH59_638 CH59_645 SM00382 ATPases associated with a variety of cellular activities CH59_649 SM00450 Rhodanese Homology Domain CH59_652 SM00382 ATPases associated with a variety of cellular activities CH59_661 SM00382 ATPases associated with a variety of cellular activities CH59_664 SM00507 HNH nucleases CH59_665 SM01118 CH59_665 CH59_671 SM01321 CH59_671 CH59_681 SM01321 CH59_681 CH59_686 SM00729 Elongator protein 3, MiaB family, Radical SAM CH59_690 SM00487 DEAD-like helicases superfamily CH59_690 SM00490 helicase superfamily c-terminal domain CH59_691 SM00382 ATPases associated with a variety of cellular activities CH59_695 SM00729 Elongator protein 3, MiaB family, Radical SAM CH59_695 SM00876 Biotin and Thiamin Synthesis associated domain CH59_699 SM00382 ATPases associated with a variety of cellular activities CH59_704 SM00382 ATPases associated with a variety of cellular activities CH59_713 SM00855 Phosphoglycerate mutase family CH59_715 SM00382 ATPases associated with a variety of cellular activities CH59_72 SM00354 helix_turn _helix lactose operon repressor CH59_735 SM00881 CoA binding domain CH59_739 SM00861 Transketolase, pyrimidine binding domain CH59_752 SM01321 CH59_752 CH59_759 SM00778 Zinc-binding domain of primase-helicase CH59_766 SM00382 ATPases associated with a variety of cellular activities CH59_771 SM00479 CH59_771 CH59_774 SM00849 Metallo-beta-lactamase superfamily CH59_775 SM00257 Lysin motif CH59_785 SM00382 ATPases associated with a variety of cellular activities CH59_785 SM00930 CH59_785 CH59_793 SM01322 CH59_793 CH59_797 SM00977 TilS substrate C-terminal domain CH59_800 SM00481 DNA polymerase alpha chain like domain CH59_806 SM00935 Outer membrane protein (OmpH-like) CH59_808 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH59_817 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH59_823 SM01321 CH59_823 CH59_825 SM01321 CH59_825 CH59_829 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH59_829 SM00475 5'-3' exonuclease CH59_837 SM00925 MltA specific insert domain CH59_840 SM00646 CH59_840 CH59_85 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH59_85 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH59_850 SM00382 ATPases associated with a variety of cellular activities CH59_851 SM00823 Phosphopantetheine attachment site CH59_851 SM00825 Beta-ketoacyl synthase CH59_855 SM00364 Leucine-rich repeats, bacterial type CH59_855 SM00369 Leucine-rich repeats, typical (most populated) subfamily CH59_856 SM00364 Leucine-rich repeats, bacterial type CH59_857 SM00364 Leucine-rich repeats, bacterial type CH59_86 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH59_865 SM00052 Putative diguanylate phosphodiesterase CH59_865 SM00091 PAS domain CH59_865 SM00267 diguanylate cyclase CH59_872 SM01006 Siderophore biosynthesis protein domain CH59_879 SM00421 helix_turn_helix, Lux Regulon CH59_907 SM00382 ATPases associated with a variety of cellular activities CH59_913 SM00478 endonuclease III CH59_913 SM00525 CH59_913 CH59_920 SM00729 Elongator protein 3, MiaB family, Radical SAM CH59_922 SM01152 CH59_922 CH59_926 SM00382 ATPases associated with a variety of cellular activities CH59_929 SM00732 Likely ribonuclease with RNase H fold. CH59_93 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH59_934 SM00731 SprT homologues. CH59_940 SM00861 Transketolase, pyrimidine binding domain CH59_941 SM01321 CH59_941 CH59_942 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH59_954 SM01011 Aminopeptidase P, N-terminal domain CH59_968 SM00448 cheY-homologous receiver domain CH59_968 SM00862 Transcriptional regulatory protein, C terminal CH59_969 SM00387 Histidine kinase-like ATPases CH59_969 SM00388 His Kinase A (phosphoacceptor) domain CH59_975 SM00937 CH59_975 CH59_980 SM00382 ATPases associated with a variety of cellular activities CH59_984 SM00530 Helix-turn-helix XRE-family like proteins CH59_986 SM00530 Helix-turn-helix XRE-family like proteins CH59_987 SM00778 Zinc-binding domain of primase-helicase CH59_987 SM00885 D5 N terminal like