locus-tag class description YPDSF_0001 IPR003593 AAA+ ATPase domain YPDSF_0001 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0001 IPR038454 DnaA, N-terminal domain superfamily YPDSF_0001 IPR024633 DnaA N-terminal domain YPDSF_0001 IPR013159 Chromosomal replication initiator, DnaA C-terminal YPDSF_0001 IPR010921 Trp repressor/replication initiator YPDSF_0001 IPR018312 Chromosomal replication control, initiator DnaA, conserved site YPDSF_0001 IPR020591 Chromosomal replication control, initiator DnaA-like YPDSF_0001 IPR001957 Chromosomal replication control, initiator DnaA YPDSF_0001 IPR013317 Chromosomal replication initiator protein DnaA YPDSF_0002 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal YPDSF_0002 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal YPDSF_0002 IPR022637 DNA polymerase III, beta sliding clamp, central YPDSF_0002 IPR001001 DNA polymerase III, beta sliding clamp YPDSF_0003 IPR001238 DNA-binding, RecF YPDSF_0003 IPR018078 DNA-binding, RecF, conserved site YPDSF_0003 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0003 IPR003395 RecF/RecN/SMC, N-terminal YPDSF_0003 IPR042174 DNA-binding RecF, domain 2 YPDSF_0004 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_0004 IPR001241 DNA topoisomerase, type IIA YPDSF_0004 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPDSF_0004 IPR020568 Ribosomal protein S5 domain 2-type fold YPDSF_0004 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 YPDSF_0004 IPR003594 Histidine kinase/HSP90-like ATPase YPDSF_0004 IPR041423 DNA gyrase subunit B insert domain YPDSF_0004 IPR011557 DNA gyrase, subunit B YPDSF_0004 IPR002288 DNA gyrase B subunit, C-terminal YPDSF_0004 IPR013760 DNA topoisomerase, type IIA-like domain superfamily YPDSF_0004 IPR018522 DNA topoisomerase, type IIA, conserved site YPDSF_0004 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal YPDSF_0004 IPR034160 DNA gyrase subunit B, TOPRIM domain YPDSF_0004 IPR006171 TOPRIM domain YPDSF_0005 IPR000150 Cof family YPDSF_0005 IPR036412 HAD-like superfamily YPDSF_0005 IPR006379 HAD-superfamily hydrolase, subfamily IIB YPDSF_0005 IPR023214 HAD superfamily YPDSF_0006 IPR001584 Integrase, catalytic core YPDSF_0006 IPR038965 Transposase InsF-like YPDSF_0006 IPR025948 HTH-like domain YPDSF_0006 IPR036397 Ribonuclease H superfamily YPDSF_0006 IPR012337 Ribonuclease H-like superfamily YPDSF_0007 IPR003462 Ornithine cyclodeaminase/mu-crystallin YPDSF_0007 IPR023401 Ornithine cyclodeaminase, N-terminal YPDSF_0007 IPR036291 NAD(P)-binding domain superfamily YPDSF_0007 IPR014334 Ectoine utilization protein EutC YPDSF_0008 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPDSF_0008 IPR005789 Threonine dehydratase, catabolic YPDSF_0008 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site YPDSF_0008 IPR001926 Pyridoxal-phosphate dependent enzyme YPDSF_0008 IPR002912 ACT domain YPDSF_0009 IPR011659 WD40-like Beta Propeller YPDSF_0009 IPR011042 Six-bladed beta-propeller, TolB-like YPDSF_0009 IPR022223 Protein of unknown function DUF3748 YPDSF_0010 IPR011042 Six-bladed beta-propeller, TolB-like YPDSF_0010 IPR022223 Protein of unknown function DUF3748 YPDSF_0010 IPR011659 WD40-like Beta Propeller YPDSF_0011 IPR010780 Protein of unknown function DUF1375 YPDSF_0012 IPR037913 Small heat shock protein IbpA/IbpB, ACD domain YPDSF_0012 IPR008978 HSP20-like chaperone YPDSF_0012 IPR023728 Small heat shock protein IbpA YPDSF_0012 IPR002068 Alpha crystallin/Hsp20 domain YPDSF_0013 IPR037913 Small heat shock protein IbpA/IbpB, ACD domain YPDSF_0013 IPR008978 HSP20-like chaperone YPDSF_0013 IPR022848 Small heat shock protein IbpB YPDSF_0013 IPR002068 Alpha crystallin/Hsp20 domain YPDSF_0014 IPR006512 YidE/YbjL duplication YPDSF_0014 IPR023018 Transport protein YidE, putative YPDSF_0014 IPR006037 Regulator of K+ conductance, C-terminal YPDSF_0014 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily YPDSF_0015 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_0015 IPR004839 Aminotransferase, class I/classII YPDSF_0015 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_0016 IPR017853 Glycoside hydrolase superfamily YPDSF_0016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPDSF_0016 IPR014635 Alpha-amylase, MalS type YPDSF_0017 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPDSF_0017 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPDSF_0017 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPDSF_0017 IPR023756 Glyoxylate/hydroxypyruvate reductase B YPDSF_0017 IPR036291 NAD(P)-binding domain superfamily YPDSF_0017 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPDSF_0019 IPR039567 Glycine zipper domain YPDSF_0019 IPR006665 OmpA-like domain YPDSF_0019 IPR006690 Outer membrane protein, OmpA-like, conserved site YPDSF_0019 IPR036737 OmpA-like domain superfamily YPDSF_0019 IPR006664 Outer membrane protein, bacterial YPDSF_0021 IPR011257 DNA glycosylase YPDSF_0021 IPR004597 DNA-3-methyladenine glycosylase I YPDSF_0021 IPR005019 Methyladenine glycosylase YPDSF_0022 IPR002310 Glycine-tRNA ligase, alpha subunit YPDSF_0022 IPR006194 Glycine-tRNA synthetase, heterodimeric YPDSF_0023 IPR006194 Glycine-tRNA synthetase, heterodimeric YPDSF_0023 IPR015944 Glycine-tRNA ligase, beta subunit YPDSF_0023 IPR008909 DALR anticodon binding YPDSF_0024 IPR021413 Protein of unknown function DUF3053 YPDSF_0025 IPR013014 Phosphotransferase system, EIIC component, type 2 YPDSF_0025 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC YPDSF_0025 IPR036095 PTS system IIB component-like superfamily YPDSF_0025 IPR013011 Phosphotransferase system, EIIB component, type 2 YPDSF_0025 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPDSF_0025 IPR029503 Phosphotransferase system EIIB component, mannitol-specific YPDSF_0025 IPR003352 Phosphotransferase system, EIIC YPDSF_0025 IPR016152 Phosphotransferase/anion transporter YPDSF_0025 IPR002178 PTS EIIA type-2 domain YPDSF_0026 IPR036291 NAD(P)-binding domain superfamily YPDSF_0026 IPR013131 Mannitol dehydrogenase, N-terminal YPDSF_0026 IPR023027 Mannitol dehydrogenase, conserved site YPDSF_0026 IPR000669 Mannitol dehydrogenase YPDSF_0026 IPR023028 Mannitol-1-phosphate 5-dehydrogenase YPDSF_0026 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPDSF_0026 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPDSF_0026 IPR013118 Mannitol dehydrogenase, C-terminal YPDSF_0027 IPR007761 Mannitol repressor MtlR-like YPDSF_0027 IPR038026 MtlR-like superfamily YPDSF_0028 IPR021230 Protein of unknown function DUF2810 YPDSF_0031 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YPDSF_0031 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPDSF_0031 IPR003660 HAMP domain YPDSF_0031 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPDSF_0031 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding YPDSF_0031 IPR004090 Chemotaxis methyl-accepting receptor YPDSF_0032 IPR019831 Manganese/iron superoxide dismutase, N-terminal YPDSF_0032 IPR001189 Manganese/iron superoxide dismutase YPDSF_0032 IPR019832 Manganese/iron superoxide dismutase, C-terminal YPDSF_0032 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily YPDSF_0032 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily YPDSF_0032 IPR019833 Manganese/iron superoxide dismutase, binding site YPDSF_0033 IPR016193 Cytidine deaminase-like YPDSF_0033 IPR003786 Sulfur carrier protein FdhD YPDSF_0034 IPR006656 Molybdopterin oxidoreductase YPDSF_0034 IPR006657 Molybdopterin dinucleotide-binding domain YPDSF_0034 IPR006443 Formate dehydrogenase-N, alpha subunit YPDSF_0034 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPDSF_0034 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPDSF_0034 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPDSF_0034 IPR009010 Aspartate decarboxylase-like domain superfamily YPDSF_0034 IPR006311 Twin-arginine translocation pathway, signal sequence YPDSF_0035 IPR006311 Twin-arginine translocation pathway, signal sequence YPDSF_0035 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPDSF_0035 IPR009010 Aspartate decarboxylase-like domain superfamily YPDSF_0035 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPDSF_0035 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPDSF_0035 IPR006656 Molybdopterin oxidoreductase YPDSF_0035 IPR006657 Molybdopterin dinucleotide-binding domain YPDSF_0035 IPR006443 Formate dehydrogenase-N, alpha subunit YPDSF_0036 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPDSF_0036 IPR015246 Formate dehydrogenase, transmembrane YPDSF_0036 IPR014603 Formate dehydrogenase iron-sulphur subunit YPDSF_0036 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPDSF_0036 IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria YPDSF_0036 IPR038384 Formate dehydrogenase, C-terminal domain superfamily YPDSF_0037 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase YPDSF_0037 IPR016174 Di-haem cytochrome, transmembrane YPDSF_0037 IPR006471 Formate dehydrogenase, gamma subunit YPDSF_0038 IPR006452 Formate dehydrogenase accessory protein YPDSF_0038 IPR024064 FdhE-like superfamily YPDSF_0039 IPR004534 L-seryl-tRNA(Sec) selenium transferase YPDSF_0039 IPR018319 L-seryl-tRNA selenium transferase-like YPDSF_0039 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_0039 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_0039 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain YPDSF_0040 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_0040 IPR015191 Translation elongation factor SelB, winged helix, type 3 YPDSF_0040 IPR031157 Tr-type G domain, conserved site YPDSF_0040 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0040 IPR000795 Transcription factor, GTP-binding domain YPDSF_0040 IPR009000 Translation protein, beta-barrel domain superfamily YPDSF_0040 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPDSF_0040 IPR004535 Translation elongation factor, selenocysteine-specific YPDSF_0040 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0040 IPR004161 Translation elongation factor EFTu-like, domain 2 YPDSF_0040 IPR015190 Translation elongation factor SelB, winged helix, type 2 YPDSF_0043 IPR001207 Transposase, mutator type YPDSF_0046 IPR011701 Major facilitator superfamily YPDSF_0046 IPR020846 Major facilitator superfamily domain YPDSF_0046 IPR036259 MFS transporter superfamily YPDSF_0047 IPR038965 Transposase InsF-like YPDSF_0047 IPR025948 HTH-like domain YPDSF_0047 IPR036397 Ribonuclease H superfamily YPDSF_0047 IPR001584 Integrase, catalytic core YPDSF_0047 IPR012337 Ribonuclease H-like superfamily YPDSF_0048 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_0048 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPDSF_0048 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0048 IPR014036 DeoR C-terminal sensor domain YPDSF_0048 IPR037171 NagB/RpiA transferase-like YPDSF_0048 IPR001034 DeoR-type HTH domain YPDSF_0049 IPR022732 Peptidase S54, GlpG peptidase, N-terminal YPDSF_0049 IPR035952 Rhomboid-like superfamily YPDSF_0049 IPR038236 GlpG peptidase, N-terminal domain superfamily YPDSF_0049 IPR023662 Rhomboid protease GlpG YPDSF_0049 IPR022764 Peptidase S54, rhomboid domain YPDSF_0050 IPR001763 Rhodanese-like domain YPDSF_0050 IPR023695 Thiosulfate sulfurtransferase, bacterial YPDSF_0050 IPR036873 Rhodanese-like domain superfamily YPDSF_0051 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0051 IPR000792 Transcription regulator LuxR, C-terminal YPDSF_0051 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0051 IPR011990 Tetratricopeptide-like helical domain superfamily YPDSF_0051 IPR041617 MalT-like TPR region YPDSF_0051 IPR023768 Transcriptional regulator HTH-type, MalT YPDSF_0051 IPR016032 Signal transduction response regulator, C-terminal effector YPDSF_0052 IPR011833 Glycogen/starch/alpha-glucan phosphorylase YPDSF_0052 IPR000811 Glycosyl transferase, family 35 YPDSF_0052 IPR035090 Phosphorylase pyridoxal-phosphate attachment site YPDSF_0053 IPR017853 Glycoside hydrolase superfamily YPDSF_0053 IPR003385 Glycoside hydrolase, family 77 YPDSF_0054 IPR017726 Fe/S biogenesis protein NfuA YPDSF_0054 IPR000361 FeS cluster biogenesis YPDSF_0054 IPR034904 Fe-S cluster assembly domain superfamily YPDSF_0054 IPR035903 HesB-like domain superfamily YPDSF_0054 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal YPDSF_0055 IPR029057 Phosphoribosyltransferase-like YPDSF_0055 IPR000836 Phosphoribosyltransferase domain YPDSF_0055 IPR005222 Competence protein ComF YPDSF_0056 IPR029058 Alpha/Beta hydrolase fold YPDSF_0056 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase YPDSF_0056 IPR000073 Alpha/beta hydrolase fold-1 YPDSF_0057 IPR025543 Dodecin-like YPDSF_0057 IPR010854 Domain of unknown function DUF1471 YPDSF_0057 IPR036275 YdgH-like superfamily YPDSF_0058 IPR015102 Transcriptional regulator HTH-type, FeoC YPDSF_0058 IPR023732 Probable [Fe-S]-dependent transcriptional repressor YPDSF_0058 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_0058 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0059 IPR003373 Ferrous iron transport protein B YPDSF_0059 IPR011640 Ferrous iron transport protein B, C-terminal YPDSF_0059 IPR030389 FeoB-type guanine nucleotide-binding (G) domain YPDSF_0059 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain YPDSF_0059 IPR041069 FeoB, cytosolic helical domain YPDSF_0059 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0059 IPR005225 Small GTP-binding protein domain YPDSF_0060 IPR008988 Transcriptional repressor, C-terminal YPDSF_0060 IPR038157 Ferrous iron transporter, core domain YPDSF_0060 IPR007167 Ferrous iron transporter FeoA domain YPDSF_0061 IPR010994 RuvA domain 2-like YPDSF_0061 IPR022967 RNA-binding domain, S1 YPDSF_0061 IPR003029 S1 domain YPDSF_0061 IPR023323 Tex-like domain superfamily YPDSF_0061 IPR018974 Tex-like protein, N-terminal YPDSF_0061 IPR032639 Tex protein, YqgF-like domain YPDSF_0061 IPR006641 YqgF/RNase H-like domain YPDSF_0061 IPR037027 YqgF/RNase H-like domain superfamily YPDSF_0061 IPR012340 Nucleic acid-binding, OB-fold YPDSF_0061 IPR023319 Tex-like protein, HTH domain superfamily YPDSF_0061 IPR041692 HHH domain 9 YPDSF_0061 IPR012337 Ribonuclease H-like superfamily YPDSF_0062 IPR006358 Transcription elongation factor GreB YPDSF_0062 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily YPDSF_0062 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal YPDSF_0062 IPR023459 Transcription elongation factor GreA/GreB family YPDSF_0062 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal YPDSF_0062 IPR028624 Transcription elongation factor GreA/GreB YPDSF_0062 IPR018151 Transcription elongation factor, GreA/GreB, conserved site YPDSF_0062 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily YPDSF_0063 IPR011006 CheY-like superfamily YPDSF_0063 IPR001867 OmpR/PhoB-type DNA-binding domain YPDSF_0063 IPR039420 Transcriptional regulatory protein WalR-like YPDSF_0063 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0063 IPR016032 Signal transduction response regulator, C-terminal effector YPDSF_0063 IPR001789 Signal transduction response regulator, receiver domain YPDSF_0064 IPR003660 HAMP domain YPDSF_0064 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPDSF_0064 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPDSF_0064 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPDSF_0064 IPR005467 Histidine kinase domain YPDSF_0064 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_0064 IPR003594 Histidine kinase/HSP90-like ATPase YPDSF_0065 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising YPDSF_0065 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal YPDSF_0065 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal YPDSF_0065 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site YPDSF_0066 IPR000397 Heat shock protein Hsp33 YPDSF_0066 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily YPDSF_0066 IPR016153 Heat shock protein Hsp33, N-terminal YPDSF_0066 IPR016154 Heat shock protein Hsp33, C-terminal YPDSF_0067 IPR025708 Heat shock protein 15 YPDSF_0067 IPR036986 RNA-binding S4 domain superfamily YPDSF_0067 IPR002942 RNA-binding S4 domain YPDSF_0068 IPR036412 HAD-like superfamily YPDSF_0068 IPR006439 HAD hydrolase, subfamily IA YPDSF_0068 IPR041492 Haloacid dehalogenase-like hydrolase YPDSF_0068 IPR023214 HAD superfamily YPDSF_0069 IPR010771 Intracellular growth attenuator IgaA YPDSF_0070 IPR020084 NUDIX hydrolase, conserved site YPDSF_0070 IPR000086 NUDIX hydrolase domain YPDSF_0070 IPR015797 NUDIX hydrolase-like domain superfamily YPDSF_0071 IPR012338 Beta-lactamase/transpeptidase-like YPDSF_0071 IPR001460 Penicillin-binding protein, transpeptidase YPDSF_0071 IPR031376 Penicillin-binding protein, OB-like domain YPDSF_0071 IPR036950 Penicillin binding protein transglycosylase domain YPDSF_0071 IPR023346 Lysozyme-like domain superfamily YPDSF_0071 IPR001264 Glycosyl transferase, family 51 YPDSF_0077 IPR001775 GspD/PilQ family YPDSF_0077 IPR011662 Secretin/TonB, short N-terminal domain YPDSF_0077 IPR004845 Type II secretion system GspD, conserved site YPDSF_0077 IPR005644 NolW-like YPDSF_0077 IPR038591 NolW-like superfamily YPDSF_0077 IPR013355 Type IV pilus secretin PilQ YPDSF_0077 IPR004846 Type II/III secretion system YPDSF_0078 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0078 IPR000623 Shikimate kinase/Threonine synthase-like 1 YPDSF_0078 IPR031322 Shikimate kinase/gluconokinase YPDSF_0078 IPR023000 Shikimate kinase, conserved site YPDSF_0079 IPR030963 3-dehydroquinate synthase family YPDSF_0079 IPR030960 3-dehydroquinate synthase domain YPDSF_0079 IPR016037 3-dehydroquinate synthase AroB YPDSF_0080 IPR007730 Sporulation-like domain YPDSF_0080 IPR036680 Sporulation-like domain superfamily YPDSF_0081 IPR012327 D12 class N6 adenine-specific DNA methyltransferase YPDSF_0081 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPDSF_0081 IPR023095 Adenine-specific methyltransferase, domain 2 YPDSF_0081 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_0081 IPR012263 Adenine modification methylase, M.EcoRV-type YPDSF_0082 IPR013785 Aldolase-type TIM barrel YPDSF_0082 IPR026019 Ribulose-phosphate 3-epimerase YPDSF_0082 IPR000056 Ribulose-phosphate 3-epimerase-like YPDSF_0082 IPR011060 Ribulose-phosphate binding barrel YPDSF_0083 IPR041492 Haloacid dehalogenase-like hydrolase YPDSF_0083 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic YPDSF_0083 IPR006439 HAD hydrolase, subfamily IA YPDSF_0083 IPR023214 HAD superfamily YPDSF_0083 IPR036412 HAD-like superfamily YPDSF_0083 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPDSF_0083 IPR037512 Phosphoglycolate phosphatase, prokaryotic YPDSF_0084 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPDSF_0084 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_0084 IPR002305 Aminoacyl-tRNA synthetase, class Ic YPDSF_0084 IPR002306 Tryptophan-tRNA ligase YPDSF_0084 IPR024109 Tryptophan-tRNA ligase, bacterial-type YPDSF_0085 IPR019478 Sirohaem synthase, dimerisation domain YPDSF_0085 IPR037115 Sirohaem synthase, dimerisation domain superfamily YPDSF_0085 IPR036291 NAD(P)-binding domain superfamily YPDSF_0085 IPR000878 Tetrapyrrole methylase YPDSF_0085 IPR006366 Uroporphyrin-III C-methyltransferase YPDSF_0085 IPR014776 Tetrapyrrole methylase, subdomain 2 YPDSF_0085 IPR006367 Sirohaem synthase, N-terminal YPDSF_0085 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site YPDSF_0085 IPR035996 Tetrapyrrole methylase superfamily YPDSF_0085 IPR014777 Tetrapyrrole methylase, subdomain 1 YPDSF_0085 IPR028281 Siroheme synthase, central domain YPDSF_0085 IPR012409 Sirohaem synthase YPDSF_0086 IPR024002 Formate/nitrite transporter, conserved site YPDSF_0086 IPR000292 Formate/nitrite transporter YPDSF_0086 IPR023271 Aquaporin-like YPDSF_0087 IPR017881 Nitrite reductase (NADH) small subunit YPDSF_0087 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily YPDSF_0087 IPR012748 Rieske-like [2Fe-2S] domain, NirD-type YPDSF_0088 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily YPDSF_0088 IPR041575 NADH-rubredoxin oxidoreductase, C-terminal YPDSF_0088 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site YPDSF_0088 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain YPDSF_0088 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_0088 IPR017121 Nitrite reductase [NAD(P)H], large subunit YPDSF_0088 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB YPDSF_0088 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain YPDSF_0088 IPR023753 FAD/NAD(P)-binding domain YPDSF_0088 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily YPDSF_0088 IPR007419 BFD-like [2Fe-2S]-binding domain YPDSF_0089 IPR013108 Amidohydrolase 3 YPDSF_0089 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPDSF_0089 IPR032466 Metal-dependent hydrolase YPDSF_0090 IPR023528 Major facilitator superfamily transporter, TsgA YPDSF_0090 IPR036259 MFS transporter superfamily YPDSF_0090 IPR011701 Major facilitator superfamily YPDSF_0090 IPR020846 Major facilitator superfamily domain YPDSF_0092 IPR028082 Periplasmic binding protein-like I YPDSF_0092 IPR000843 LacI-type HTH domain YPDSF_0092 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPDSF_0095 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site YPDSF_0095 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain YPDSF_0095 IPR029000 Cyclophilin-like domain superfamily YPDSF_0096 IPR033186 Helicase HerA-like C-terminal YPDSF_0096 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0097 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain YPDSF_0097 IPR029062 Class I glutamine amidotransferase-like YPDSF_0097 IPR017926 Glutamine amidotransferase YPDSF_0098 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_0098 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_0098 IPR005814 Aminotransferase class-III YPDSF_0098 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_0098 IPR004636 Acetylornithine/Succinylornithine transaminase family YPDSF_0098 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria YPDSF_0099 IPR010020 Integral membrane protein, YccS/YhfK YPDSF_0099 IPR032692 Integral membrane protein YccS, N-terminal YPDSF_0100 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0100 IPR018335 Transcription regulator HTH, Crp-type, conserved site YPDSF_0100 IPR014710 RmlC-like jelly roll fold YPDSF_0100 IPR012318 Crp-type HTH domain YPDSF_0100 IPR000595 Cyclic nucleotide-binding domain YPDSF_0100 IPR018488 Cyclic nucleotide-binding, conserved site YPDSF_0100 IPR018490 Cyclic nucleotide-binding-like YPDSF_0100 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_0101 IPR015946 K homology domain-like, alpha/beta YPDSF_0101 IPR003718 OsmC/Ohr family YPDSF_0101 IPR036102 OsmC/Ohr superfamily YPDSF_0103 IPR006083 Phosphoribulokinase/uridine kinase YPDSF_0103 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0103 IPR006082 Phosphoribulokinase YPDSF_0104 IPR036685 YehU-like superfamily YPDSF_0104 IPR010648 Uncharacterised protein family UPF0270 YPDSF_0105 IPR000952 AB hydrolase 4, conserved site YPDSF_0105 IPR029058 Alpha/Beta hydrolase fold YPDSF_0105 IPR000073 Alpha/beta hydrolase fold-1 YPDSF_0105 IPR012020 AB hydrolase 4 family YPDSF_0106 IPR001123 Amino acid exporter protein, LeuE-type YPDSF_0107 IPR010068 Taurine ABC transporter, substrate-binding protein TauA YPDSF_0107 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain YPDSF_0107 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPDSF_0108 IPR017871 ABC transporter, conserved site YPDSF_0108 IPR015859 ABC transporter, taurine import, TauD YPDSF_0108 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0108 IPR003439 ABC transporter-like YPDSF_0108 IPR003593 AAA+ ATPase domain YPDSF_0109 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_0109 IPR035906 MetI-like superfamily YPDSF_0110 IPR042098 Taurine dioxygenase TauD-like superfamily YPDSF_0110 IPR003819 TauD/TfdA-like domain YPDSF_0113 IPR001173 Glycosyltransferase 2-like YPDSF_0113 IPR029044 Nucleotide-diphospho-sugar transferases YPDSF_0114 IPR003439 ABC transporter-like YPDSF_0114 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0114 IPR003593 AAA+ ATPase domain YPDSF_0114 IPR032781 ABC-transporter extension domain YPDSF_0114 IPR017871 ABC transporter, conserved site YPDSF_0115 IPR023947 Glutathione-regulated potassium-efflux system ancillary protein KefG YPDSF_0115 IPR029039 Flavoprotein-like superfamily YPDSF_0115 IPR003680 Flavodoxin-like fold YPDSF_0116 IPR038770 Sodium/solute symporter superfamily YPDSF_0116 IPR036291 NAD(P)-binding domain superfamily YPDSF_0116 IPR006153 Cation/H+ exchanger YPDSF_0116 IPR004771 K+/H+ exchanger YPDSF_0116 IPR020884 Glutathione-regulated potassium-efflux system protein KefB YPDSF_0116 IPR003148 Regulator of K+ conductance, N-terminal YPDSF_0117 IPR012658 Conserved hypothetical protein CHP02443 YPDSF_0118 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YPDSF_0119 IPR007236 SlyX YPDSF_0120 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal YPDSF_0120 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily YPDSF_0120 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YPDSF_0121 IPR013559 YheO-like YPDSF_0121 IPR039445 Transcriptional regulator DauR-like, HTH domain YPDSF_0121 IPR039446 Transcriptional regulator DauR-like YPDSF_0122 IPR003787 Sulphur relay, DsrE/F-like protein YPDSF_0122 IPR027396 DsrEFH-like YPDSF_0122 IPR017463 Sulphur relay, TusD/DsrE YPDSF_0123 IPR003787 Sulphur relay, DsrE/F-like protein YPDSF_0123 IPR037450 Sulphur relay, TusC YPDSF_0123 IPR017462 Sulphur relay, TusC/DsrF YPDSF_0123 IPR027396 DsrEFH-like YPDSF_0124 IPR023526 Sulphur relay, TusB YPDSF_0124 IPR007215 Sulphur relay, TusB/DsrH YPDSF_0124 IPR027396 DsrEFH-like YPDSF_0125 IPR012340 Nucleic acid-binding, OB-fold YPDSF_0125 IPR006032 Ribosomal protein S12/S23 YPDSF_0125 IPR005679 Ribosomal protein S12, bacterial-type YPDSF_0126 IPR036823 Ribosomal protein S7 domain superfamily YPDSF_0126 IPR005717 Ribosomal protein S7, bacterial/organellar-type YPDSF_0126 IPR000235 Ribosomal protein S5/S7 YPDSF_0126 IPR023798 Ribosomal protein S7 domain YPDSF_0126 IPR020606 Ribosomal protein S7, conserved site YPDSF_0127 IPR004540 Translation elongation factor EFG/EF2 YPDSF_0127 IPR000640 Elongation factor EFG, domain V-like YPDSF_0127 IPR005517 Translation elongation factor EFG/EF2, domain IV YPDSF_0127 IPR031157 Tr-type G domain, conserved site YPDSF_0127 IPR004161 Translation elongation factor EFTu-like, domain 2 YPDSF_0127 IPR035649 EFG, domain V YPDSF_0127 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPDSF_0127 IPR005225 Small GTP-binding protein domain YPDSF_0127 IPR000795 Transcription factor, GTP-binding domain YPDSF_0127 IPR009000 Translation protein, beta-barrel domain superfamily YPDSF_0127 IPR035647 EF-G domain III/V-like YPDSF_0127 IPR020568 Ribosomal protein S5 domain 2-type fold YPDSF_0127 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0127 IPR009022 Elongation factor G, domain III YPDSF_0127 IPR041095 Elongation Factor G, domain II YPDSF_0128 IPR031157 Tr-type G domain, conserved site YPDSF_0128 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain YPDSF_0128 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0128 IPR005225 Small GTP-binding protein domain YPDSF_0128 IPR000795 Transcription factor, GTP-binding domain YPDSF_0128 IPR009000 Translation protein, beta-barrel domain superfamily YPDSF_0128 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPDSF_0128 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle YPDSF_0128 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal YPDSF_0128 IPR033720 Elongation factor Tu, domain 2 YPDSF_0128 IPR004161 Translation elongation factor EFTu-like, domain 2 YPDSF_0129 IPR036515 Transposase IS200-like superfamily YPDSF_0129 IPR002686 Transposase IS200-like YPDSF_0130 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily YPDSF_0130 IPR007419 BFD-like [2Fe-2S]-binding domain YPDSF_0131 IPR002024 Bacterioferritin YPDSF_0131 IPR012347 Ferritin-like YPDSF_0131 IPR009040 Ferritin-like diiron domain YPDSF_0131 IPR009078 Ferritin-like superfamily YPDSF_0131 IPR008331 Ferritin/DPS protein domain YPDSF_0132 IPR036838 Ribosomal protein S10 domain superfamily YPDSF_0132 IPR027486 Ribosomal protein S10 domain YPDSF_0132 IPR018268 Ribosomal protein S10, conserved site YPDSF_0132 IPR001848 Ribosomal protein S10 YPDSF_0133 IPR009000 Translation protein, beta-barrel domain superfamily YPDSF_0133 IPR000597 Ribosomal protein L3 YPDSF_0133 IPR019927 Ribosomal protein L3, bacterial/organelle-type YPDSF_0133 IPR019926 Ribosomal protein L3, conserved site YPDSF_0134 IPR013005 50S ribosomal protein uL4 YPDSF_0134 IPR023574 Ribosomal protein L4 domain superfamily YPDSF_0134 IPR002136 Ribosomal protein L4/L1e YPDSF_0135 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily YPDSF_0135 IPR012678 Ribosomal protein L23/L15e core domain superfamily YPDSF_0135 IPR013025 Ribosomal protein L25/L23 YPDSF_0135 IPR001014 Ribosomal protein L23/L25, conserved site YPDSF_0136 IPR012340 Nucleic acid-binding, OB-fold YPDSF_0136 IPR014722 Ribosomal protein L2, domain 2 YPDSF_0136 IPR002171 Ribosomal protein L2 YPDSF_0136 IPR008991 Translation protein SH3-like domain superfamily YPDSF_0136 IPR022669 Ribosomal protein L2, C-terminal YPDSF_0136 IPR022671 Ribosomal protein L2, conserved site YPDSF_0136 IPR014726 Ribosomal protein L2, domain 3 YPDSF_0136 IPR022666 Ribosomal Proteins L2, RNA binding domain YPDSF_0136 IPR005880 Ribosomal protein L2, bacterial/organellar-type YPDSF_0137 IPR023575 Ribosomal protein S19, superfamily YPDSF_0137 IPR002222 Ribosomal protein S19/S15 YPDSF_0137 IPR020934 Ribosomal protein S19 conserved site YPDSF_0137 IPR005732 Ribosomal protein S19, bacterial-type YPDSF_0138 IPR018260 Ribosomal protein L22/L17, conserved site YPDSF_0138 IPR001063 Ribosomal protein L22/L17 YPDSF_0138 IPR036394 Ribosomal protein L22/L17 superfamily YPDSF_0138 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type YPDSF_0139 IPR009019 K homology domain superfamily, prokaryotic type YPDSF_0139 IPR005704 Ribosomal protein S3, bacterial-type YPDSF_0139 IPR036419 Ribosomal protein S3, C-terminal domain superfamily YPDSF_0139 IPR001351 Ribosomal protein S3, C-terminal YPDSF_0139 IPR018280 Ribosomal protein S3, conserved site YPDSF_0139 IPR004044 K Homology domain, type 2 YPDSF_0139 IPR004087 K Homology domain YPDSF_0139 IPR015946 K homology domain-like, alpha/beta YPDSF_0140 IPR020798 Ribosomal protein L16, conserved site YPDSF_0140 IPR000114 Ribosomal protein L16 YPDSF_0140 IPR036920 Ribosomal protein L10e/L16 superfamily YPDSF_0140 IPR016180 Ribosomal protein L10e/L16 YPDSF_0141 IPR018254 Ribosomal protein L29, conserved site YPDSF_0141 IPR036049 Ribosomal protein L29/L35 superfamily YPDSF_0141 IPR001854 Ribosomal protein L29/L35 YPDSF_0142 IPR000266 Ribosomal protein S17/S11 YPDSF_0142 IPR019984 30S ribosomal protein S17 YPDSF_0142 IPR012340 Nucleic acid-binding, OB-fold YPDSF_0142 IPR019979 Ribosomal protein S17, conserved site YPDSF_0143 IPR036853 Ribosomal protein L14 superfamily YPDSF_0143 IPR000218 Ribosomal protein L14P YPDSF_0143 IPR005745 Ribosomal protein L14P, bacterial-type YPDSF_0143 IPR019972 Ribosomal protein L14P, conserved site YPDSF_0144 IPR014722 Ribosomal protein L2, domain 2 YPDSF_0144 IPR005824 KOW YPDSF_0144 IPR003256 Ribosomal protein L24 YPDSF_0144 IPR008991 Translation protein SH3-like domain superfamily YPDSF_0144 IPR041988 Ribosomal Protein L26/L24, KOW domain YPDSF_0144 IPR005825 Ribosomal protein L24/L26, conserved site YPDSF_0145 IPR022803 Ribosomal protein L5 domain superfamily YPDSF_0145 IPR020930 Ribosomal protein L5, bacterial-type YPDSF_0145 IPR002132 Ribosomal protein L5 YPDSF_0145 IPR031310 Ribosomal protein L5, N-terminal YPDSF_0145 IPR031309 Ribosomal protein L5, C-terminal YPDSF_0146 IPR001209 Ribosomal protein S14 YPDSF_0146 IPR018271 Ribosomal protein S14, conserved site YPDSF_0146 IPR023036 Ribosomal protein S14, bacterial/plastid YPDSF_0147 IPR035987 Ribosomal protein S8 superfamily YPDSF_0147 IPR000630 Ribosomal protein S8 YPDSF_0148 IPR019906 Ribosomal protein L6, bacterial-type YPDSF_0148 IPR020040 Ribosomal protein L6, alpha-beta domain YPDSF_0148 IPR002358 Ribosomal protein L6, conserved site YPDSF_0148 IPR000702 Ribosomal protein L6 YPDSF_0148 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily YPDSF_0149 IPR005484 Ribosomal protein L18 YPDSF_0149 IPR004389 Ribosomal protein L18, bacterial-type YPDSF_0150 IPR005712 Ribosomal protein S5, bacterial-type YPDSF_0150 IPR013810 Ribosomal protein S5, N-terminal YPDSF_0150 IPR000851 Ribosomal protein S5 YPDSF_0150 IPR018192 Ribosomal protein S5, N-terminal, conserved site YPDSF_0150 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPDSF_0150 IPR020568 Ribosomal protein S5 domain 2-type fold YPDSF_0150 IPR005324 Ribosomal protein S5, C-terminal YPDSF_0151 IPR001196 Ribosomal protein L15, conserved site YPDSF_0151 IPR036227 Ribosomal L18e/L15P superfamily YPDSF_0151 IPR021131 Ribosomal protein L18e/L15P YPDSF_0151 IPR005749 Ribosomal protein L15, bacterial-type YPDSF_0151 IPR030878 Ribosomal protein L15 YPDSF_0152 IPR026593 Protein translocase subunit SecY YPDSF_0152 IPR002208 SecY/SEC61-alpha family YPDSF_0152 IPR030659 SecY conserved site YPDSF_0152 IPR023201 SecY domain superfamily YPDSF_0153 IPR018269 Ribosomal protein S13, conserved site YPDSF_0153 IPR019980 Ribosomal protein S13, bacterial-type YPDSF_0153 IPR010979 Ribosomal protein S13-like, H2TH YPDSF_0153 IPR001892 Ribosomal protein S13 YPDSF_0153 IPR027437 30s ribosomal protein S13, C-terminal YPDSF_0154 IPR036967 Ribosomal protein S11 superfamily YPDSF_0154 IPR018102 Ribosomal S11, conserved site YPDSF_0154 IPR019981 Ribosomal protein S11, bacterial-type YPDSF_0154 IPR001971 Ribosomal protein S11 YPDSF_0155 IPR036986 RNA-binding S4 domain superfamily YPDSF_0155 IPR002942 RNA-binding S4 domain YPDSF_0155 IPR018079 Ribosomal protein S4, conserved site YPDSF_0155 IPR005709 Ribosomal protein S4, bacterial-type YPDSF_0155 IPR001912 Ribosomal protein S4/S9, N-terminal YPDSF_0155 IPR022801 Ribosomal protein S4/S9 YPDSF_0156 IPR036603 RNA polymerase, RBP11-like subunit YPDSF_0156 IPR011262 DNA-directed RNA polymerase, insert domain YPDSF_0156 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type YPDSF_0156 IPR011773 DNA-directed RNA polymerase, alpha subunit YPDSF_0156 IPR036643 DNA-directed RNA polymerase, insert domain superfamily YPDSF_0156 IPR011260 RNA polymerase, alpha subunit, C-terminal YPDSF_0157 IPR000456 Ribosomal protein L17 YPDSF_0157 IPR036373 Ribosomal protein L17 superfamily YPDSF_0158 IPR009061 Putative DNA-binding domain superfamily YPDSF_0158 IPR000551 MerR-type HTH domain YPDSF_0158 IPR011788 Zn(II)-responsive transcriptional regulator YPDSF_0159 IPR005589 Alternative ribosome-rescue factor A YPDSF_0160 IPR001185 Large-conductance mechanosensitive channel YPDSF_0160 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L YPDSF_0160 IPR019823 Large-conductance mechanosensitive channel, conserved site YPDSF_0160 IPR036019 Gated mechanosensitive channel YPDSF_0161 IPR006036 Potassium uptake protein TrkA YPDSF_0161 IPR036291 NAD(P)-binding domain superfamily YPDSF_0161 IPR006037 Regulator of K+ conductance, C-terminal YPDSF_0161 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily YPDSF_0161 IPR003148 Regulator of K+ conductance, N-terminal YPDSF_0162 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site YPDSF_0162 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_0162 IPR004573 rRNA small subunit methyltransferase B YPDSF_0162 IPR023541 rRNA small subunit methyltransferase B, enterobacteriaceae YPDSF_0162 IPR006027 NusB/RsmB/TIM44 YPDSF_0162 IPR035926 NusB-like superfamily YPDSF_0162 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type YPDSF_0162 IPR023267 RNA (C5-cytosine) methyltransferase YPDSF_0163 IPR005793 Formyl transferase, C-terminal YPDSF_0163 IPR037022 Formyl transferase, C-terminal domain superfamily YPDSF_0163 IPR002376 Formyl transferase, N-terminal YPDSF_0163 IPR036477 Formyl transferase, N-terminal domain superfamily YPDSF_0163 IPR011034 Formyl transferase-like, C-terminal domain superfamily YPDSF_0163 IPR001555 Phosphoribosylglycinamide formyltransferase, active site YPDSF_0163 IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain YPDSF_0163 IPR005794 Methionyl-tRNA formyltransferase YPDSF_0164 IPR023635 Peptide deformylase YPDSF_0164 IPR036821 Peptide deformylase superfamily YPDSF_0165 IPR041614 DprA, winged helix domain YPDSF_0165 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0165 IPR003488 DNA recombination-mediator protein A YPDSF_0166 IPR007456 Smg YPDSF_0167 IPR000380 DNA topoisomerase, type IA YPDSF_0167 IPR013498 DNA topoisomerase, type IA, zn finger YPDSF_0168 IPR006070 YrdC-like domain YPDSF_0168 IPR023535 Threonylcarbamoyl-AMP synthase YPDSF_0168 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily YPDSF_0169 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal YPDSF_0169 IPR036291 NAD(P)-binding domain superfamily YPDSF_0169 IPR041121 SDH, C-terminal YPDSF_0169 IPR011342 Shikimate dehydrogenase YPDSF_0169 IPR022893 Shikimate dehydrogenase family YPDSF_0169 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YPDSF_0170 IPR011004 Trimeric LpxA-like superfamily YPDSF_0170 IPR001451 Hexapeptide repeat YPDSF_0171 IPR029062 Class I glutamine amidotransferase-like YPDSF_0171 IPR033752 MetA family YPDSF_0171 IPR005697 Homoserine O-succinyltransferase MetA YPDSF_0173 IPR019830 Malate synthase, conserved site YPDSF_0173 IPR001465 Malate synthase YPDSF_0173 IPR006252 Malate synthase A YPDSF_0173 IPR011076 Malate synthase-like superfamily YPDSF_0174 IPR040442 Pyruvate kinase-like domain superfamily YPDSF_0174 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site YPDSF_0174 IPR006254 Isocitrate lyase YPDSF_0174 IPR039556 ICL/PEPM domain YPDSF_0174 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPDSF_0175 IPR010452 Isocitrate dehydrogenase kinasephosphatase YPDSF_0176 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_0176 IPR029016 GAF-like domain superfamily YPDSF_0176 IPR005471 Transcription regulator IclR, N-terminal YPDSF_0176 IPR014757 Transcription regulator IclR, C-terminal YPDSF_0176 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0177 IPR011822 Cobalamin-dependent methionine synthase YPDSF_0177 IPR033706 Methionine synthase, B12-binding domain YPDSF_0177 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain YPDSF_0177 IPR006158 Cobalamin (vitamin B12)-binding domain YPDSF_0177 IPR000489 Pterin-binding domain YPDSF_0177 IPR004223 Vitamin B12-dependent methionine synthase, activation domain YPDSF_0177 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily YPDSF_0177 IPR036589 Homocysteine-binding domain superfamily YPDSF_0177 IPR003726 Homocysteine-binding domain YPDSF_0177 IPR011005 Dihydropteroate synthase-like YPDSF_0177 IPR036724 Cobalamin-binding domain superfamily YPDSF_0177 IPR036594 Methionine synthase domain YPDSF_0180 IPR027282 Two partner secretion pathway transporter YPDSF_0180 IPR005565 Haemolysin activator HlyB, C-terminal YPDSF_0180 IPR035251 ShlB, POTRA domain YPDSF_0180 IPR034746 POTRA domain YPDSF_0180 IPR013686 Polypeptide-transport-associated, ShlB-type YPDSF_0181 IPR018042 Aspartate kinase, conserved site YPDSF_0181 IPR001341 Aspartate kinase YPDSF_0181 IPR001048 Aspartate/glutamate/uridylate kinase YPDSF_0181 IPR041745 Lysine-sensitive aspartokinase 3, N-terminal catalytic domain YPDSF_0181 IPR002912 ACT domain YPDSF_0181 IPR005260 Aspartate kinase, monofunctional class YPDSF_0181 IPR036393 Acetylglutamate kinase-like superfamily YPDSF_0182 IPR018189 Phosphoglucose isomerase, conserved site YPDSF_0182 IPR023096 Phosphoglucose isomerase, C-terminal YPDSF_0182 IPR035476 Phosphoglucose isomerase, SIS domain 1 YPDSF_0182 IPR001672 Phosphoglucose isomerase (PGI) YPDSF_0182 IPR035482 Phosphoglucose isomerase, SIS domain 2 YPDSF_0183 IPR009315 Phosphate-starvation-induced PsiE YPDSF_0183 IPR020948 Phosphate-starvation-induced PsiE-like YPDSF_0184 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_0184 IPR035906 MetI-like superfamily YPDSF_0185 IPR030156 Maltose/maltodextrin transport system permease protein MalF-like YPDSF_0185 IPR035277 MalF, N-terminal YPDSF_0185 IPR029345 Maltose transport system permease protein MalF, P2 domain YPDSF_0185 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_0185 IPR035906 MetI-like superfamily YPDSF_0186 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein YPDSF_0186 IPR006061 Solute-binding family 1, conserved site YPDSF_0186 IPR006059 Bacterial extracellular solute-binding protein YPDSF_0188 IPR008995 Molybdate/tungstate binding, C-terminal YPDSF_0188 IPR015855 ABC transporter, maltose/maltodextrin import, MalK YPDSF_0188 IPR003593 AAA+ ATPase domain YPDSF_0188 IPR003439 ABC transporter-like YPDSF_0188 IPR017871 ABC transporter, conserved site YPDSF_0188 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0188 IPR040582 MalK, OB fold domain YPDSF_0189 IPR036998 Porin, LamB-type superfamily YPDSF_0189 IPR003192 Porin, LamB-type YPDSF_0189 IPR023738 Maltoporin YPDSF_0190 IPR010794 Maltose operon periplasmic YPDSF_0192 IPR036624 Hcp1-like superfamily YPDSF_0192 IPR008514 Type VI secretion system effector, Hcp YPDSF_0197 IPR036397 Ribonuclease H superfamily YPDSF_0197 IPR038965 Transposase InsF-like YPDSF_0197 IPR012337 Ribonuclease H-like superfamily YPDSF_0197 IPR001584 Integrase, catalytic core YPDSF_0197 IPR025948 HTH-like domain YPDSF_0205 IPR018368 ClpA/B, conserved site 1 YPDSF_0205 IPR019489 Clp ATPase, C-terminal YPDSF_0205 IPR017729 Type VI secretion system, ATPase ClpV1 YPDSF_0205 IPR003959 ATPase, AAA-type, core YPDSF_0205 IPR004176 Clp, N-terminal YPDSF_0205 IPR003593 AAA+ ATPase domain YPDSF_0205 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0205 IPR036628 Clp, N-terminal domain superfamily YPDSF_0205 IPR001270 ClpA/B family YPDSF_0205 IPR041546 ClpA/ClpB, AAA lid domain YPDSF_0212 IPR006531 Gp5 N-terminal YPDSF_0212 IPR037026 Vgr protein, OB-fold domain superfamily YPDSF_0212 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPDSF_0212 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPDSF_0215 IPR025479 Domain of unknown function DUF4329 YPDSF_0215 IPR006530 YD repeat YPDSF_0215 IPR001826 RHS protein YPDSF_0215 IPR031325 RHS repeat YPDSF_0215 IPR022385 Rhs repeat-associated core YPDSF_0220 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPDSF_0220 IPR037026 Vgr protein, OB-fold domain superfamily YPDSF_0220 IPR006531 Gp5 N-terminal YPDSF_0220 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPDSF_0222 IPR031325 RHS repeat YPDSF_0222 IPR001826 RHS protein YPDSF_0222 IPR006530 YD repeat YPDSF_0222 IPR022385 Rhs repeat-associated core YPDSF_0225 IPR004104 Oxidoreductase, C-terminal YPDSF_0225 IPR036291 NAD(P)-binding domain superfamily YPDSF_0225 IPR000683 Oxidoreductase, N-terminal YPDSF_0226 IPR011051 RmlC-like cupin domain superfamily YPDSF_0226 IPR014710 RmlC-like jelly roll fold YPDSF_0226 IPR009057 Homeobox-like domain superfamily YPDSF_0226 IPR018060 DNA binding HTH domain, AraC-type YPDSF_0226 IPR003313 AraC-type arabinose-binding/dimerisation domain YPDSF_0227 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU YPDSF_0227 IPR023064 D-ribose pyranase YPDSF_0227 IPR023750 RbsD-like superfamily YPDSF_0228 IPR029056 Ribokinase-like YPDSF_0228 IPR002139 Ribokinase/fructokinase YPDSF_0228 IPR011611 Carbohydrate kinase PfkB YPDSF_0228 IPR011877 Ribokinase YPDSF_0228 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPDSF_0230 IPR029039 Flavoprotein-like superfamily YPDSF_0230 IPR005025 NADPH-dependent FMN reductase-like YPDSF_0230 IPR020048 NADPH-dependent FMN reductase, SsuE YPDSF_0231 IPR015168 SsuA/THI5-like YPDSF_0231 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPDSF_0231 IPR010067 Aliphatic sulfonates-binding protein YPDSF_0232 IPR036661 Luciferase-like domain superfamily YPDSF_0232 IPR011251 Luciferase-like domain YPDSF_0232 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent YPDSF_0233 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_0233 IPR035906 MetI-like superfamily YPDSF_0234 IPR017875 Aliphatic sulfonates import ATP-binding protein SsuB YPDSF_0234 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0234 IPR017871 ABC transporter, conserved site YPDSF_0234 IPR003439 ABC transporter-like YPDSF_0234 IPR003593 AAA+ ATPase domain YPDSF_0235 IPR007337 RelB antitoxin/Antitoxin DinJ YPDSF_0235 IPR026262 Antitoxin DinJ YPDSF_0235 IPR013321 Arc-type ribbon-helix-helix YPDSF_0236 IPR006043 Xanthine/uracil/vitamin C permease YPDSF_0237 IPR006153 Cation/H+ exchanger YPDSF_0237 IPR018422 Cation/H+ exchanger, CPA1 family YPDSF_0237 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria YPDSF_0237 IPR038770 Sodium/solute symporter superfamily YPDSF_0239 IPR030857 Lipid A biosynthesis palmitoleoyltransferase, LpxP YPDSF_0239 IPR004960 Bacterial lipid A biosynthesis acyltransferase YPDSF_0239 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase YPDSF_0241 IPR003593 AAA+ ATPase domain YPDSF_0241 IPR003439 ABC transporter-like YPDSF_0241 IPR017871 ABC transporter, conserved site YPDSF_0241 IPR015861 ABC transporter, ribose import, RbsA YPDSF_0241 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0242 IPR001851 ABC transporter, permease YPDSF_0244 IPR000577 Carbohydrate kinase, FGGY YPDSF_0244 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPDSF_0244 IPR005929 Ribulokinase YPDSF_0244 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPDSF_0245 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type YPDSF_0245 IPR000644 CBS domain YPDSF_0245 IPR001347 Sugar isomerase (SIS) YPDSF_0245 IPR035474 KpsF-like, SIS domain YPDSF_0246 IPR010987 Glutathione S-transferase, C-terminal-like YPDSF_0246 IPR040079 Glutathione Transferase family YPDSF_0246 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YPDSF_0246 IPR004045 Glutathione S-transferase, N-terminal YPDSF_0246 IPR036249 Thioredoxin-like superfamily YPDSF_0249 IPR002686 Transposase IS200-like YPDSF_0249 IPR036515 Transposase IS200-like superfamily YPDSF_0250 IPR019844 Cold-shock (CSD) domain YPDSF_0250 IPR012340 Nucleic acid-binding, OB-fold YPDSF_0250 IPR002059 Cold-shock protein, DNA-binding YPDSF_0250 IPR011129 Cold shock domain YPDSF_0250 IPR012156 Cold shock, CspA YPDSF_0251 IPR012340 Nucleic acid-binding, OB-fold YPDSF_0251 IPR019844 Cold-shock (CSD) domain YPDSF_0251 IPR011129 Cold shock domain YPDSF_0251 IPR002059 Cold-shock protein, DNA-binding YPDSF_0251 IPR012156 Cold shock, CspA YPDSF_0253 IPR008816 Glycine zipper 2TM domain YPDSF_0254 IPR001279 Metallo-beta-lactamase YPDSF_0254 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPDSF_0255 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding YPDSF_0255 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPDSF_0255 IPR015815 3-hydroxyisobutyrate dehydrogenase-related YPDSF_0255 IPR036291 NAD(P)-binding domain superfamily YPDSF_0255 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain YPDSF_0255 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPDSF_0255 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site YPDSF_0256 IPR003779 Carboxymuconolactone decarboxylase-like YPDSF_0256 IPR012788 4-carboxymuconolactone decarboxylase YPDSF_0256 IPR029032 AhpD-like YPDSF_0257 IPR011701 Major facilitator superfamily YPDSF_0257 IPR020846 Major facilitator superfamily domain YPDSF_0257 IPR036259 MFS transporter superfamily YPDSF_0257 IPR004736 MFS transporter, metabolite:H symporter YPDSF_0257 IPR005829 Sugar transporter, conserved site YPDSF_0260 IPR002197 DNA binding HTH domain, Fis-type YPDSF_0260 IPR009057 Homeobox-like domain superfamily YPDSF_0260 IPR005412 DNA-binding protein Fis YPDSF_0261 IPR032887 tRNA-dihydrouridine synthase B YPDSF_0261 IPR013785 Aldolase-type TIM barrel YPDSF_0261 IPR018517 tRNA-dihydrouridine synthase, conserved site YPDSF_0261 IPR001269 tRNA-dihydrouridine synthase YPDSF_0261 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 YPDSF_0261 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal YPDSF_0261 IPR035587 DUS-like, FMN-binding domain YPDSF_0262 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_0262 IPR004498 Ribosomal protein L11 methyltransferase YPDSF_0263 IPR018212 Sodium/solute symporter, conserved site YPDSF_0263 IPR038377 Sodium/glucose symporter superfamily YPDSF_0263 IPR001734 Sodium/solute symporter YPDSF_0263 IPR011849 Sodium/pantothenate symporter YPDSF_0264 IPR010398 Protein of unknown function DUF997 YPDSF_0265 IPR016185 Pre-ATP-grasp domain superfamily YPDSF_0265 IPR011054 Rudiment single hybrid motif YPDSF_0265 IPR013815 ATP-grasp fold, subdomain 1 YPDSF_0265 IPR011761 ATP-grasp fold YPDSF_0265 IPR005481 Biotin carboxylase-like, N-terminal domain YPDSF_0265 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase YPDSF_0265 IPR005482 Biotin carboxylase, C-terminal YPDSF_0265 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain YPDSF_0265 IPR011764 Biotin carboxylation domain YPDSF_0266 IPR011053 Single hybrid motif YPDSF_0266 IPR001882 Biotin-binding site YPDSF_0266 IPR001249 Acetyl-CoA biotin carboxyl carrier YPDSF_0266 IPR000089 Biotin/lipoyl attachment YPDSF_0267 IPR001874 Dehydroquinase, class II YPDSF_0267 IPR036441 Dehydroquinase, class II superfamily YPDSF_0267 IPR018509 Dehydroquinase, class II, conserved site YPDSF_0268 IPR013130 Ferric reductase transmembrane component-like domain YPDSF_0268 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ YPDSF_0269 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily YPDSF_0269 IPR000572 Oxidoreductase, molybdopterin-binding domain YPDSF_0269 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP YPDSF_0270 IPR036291 NAD(P)-binding domain superfamily YPDSF_0270 IPR011032 GroES-like superfamily YPDSF_0270 IPR014188 Acrylyl-CoA reductase AcuI YPDSF_0270 IPR013149 Alcohol dehydrogenase, C-terminal YPDSF_0270 IPR013154 Alcohol dehydrogenase, N-terminal YPDSF_0270 IPR020843 Polyketide synthase, enoylreductase domain YPDSF_0271 IPR029787 Nucleotide cyclase YPDSF_0271 IPR001633 EAL domain YPDSF_0271 IPR035919 EAL domain superfamily YPDSF_0271 IPR033423 Gammaproteobacterial periplasmic sensor domain GAPES4 YPDSF_0271 IPR000160 GGDEF domain YPDSF_0272 IPR004753 Cell shape determining protein MreB YPDSF_0273 IPR042177 Cell/Rod shape-determining protein MreC, domain 1 YPDSF_0273 IPR042175 Cell/Rod shape-determining protein MreC, domain 2 YPDSF_0273 IPR007221 Rod shape-determining protein MreC YPDSF_0274 IPR026034 Cell shape-determining protein MreD, proteobacterial type YPDSF_0274 IPR007227 Cell shape-determining protein MreD YPDSF_0275 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein YPDSF_0275 IPR029001 Inosine triphosphate pyrophosphatase-like YPDSF_0276 IPR004659 Ribonuclease E/G YPDSF_0276 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G YPDSF_0276 IPR022967 RNA-binding domain, S1 YPDSF_0276 IPR012340 Nucleic acid-binding, OB-fold YPDSF_0276 IPR003029 S1 domain YPDSF_0277 IPR025263 Domain of unknown function DUF3971 YPDSF_0277 IPR011836 Conserved hypothetical protein CHP02099 YPDSF_0277 IPR032712 AsmA-like, C-terminal YPDSF_0278 IPR003010 Carbon-nitrogen hydrolase YPDSF_0278 IPR001110 Uncharacterised protein family UPF0012, conserved site YPDSF_0278 IPR036526 Carbon-nitrogen hydrolase superfamily YPDSF_0279 IPR002510 Metalloprotease TldD/PmbA YPDSF_0279 IPR036059 Metalloprotease TldD/PmbA superfamily YPDSF_0279 IPR035068 Metalloprotease TldD/PmbA, N-terminal YPDSF_0279 IPR025502 TldD YPDSF_0280 IPR022385 Rhs repeat-associated core YPDSF_0280 IPR041508 Toxin complex C-like repeat YPDSF_0280 IPR025968 YwqJ-like deaminase YPDSF_0281 IPR041508 Toxin complex C-like repeat YPDSF_0281 IPR011324 Cytotoxic necrotizing factor-like, catalytic YPDSF_0281 IPR037040 Cytotoxic necrotizing factor, Rho-activating domain superfamily YPDSF_0281 IPR008430 Cytotoxic necrotizing factor, Rho-activating domain YPDSF_0281 IPR022385 Rhs repeat-associated core YPDSF_0285 IPR022045 Insecticide toxin TcdB middle/N-terminal YPDSF_0285 IPR003284 Salmonella virulence plasmid 65kDa B protein YPDSF_0285 IPR022044 Insecticide toxin TcdB middle/C-terminal YPDSF_0286 IPR041079 Neuraminidase-like domain YPDSF_0286 IPR040840 Tc toxin complex TcA, C-terminal TcB-binding domain YPDSF_0289 IPR005119 LysR, substrate-binding YPDSF_0289 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0289 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_0289 IPR000847 Transcription regulator HTH, LysR YPDSF_0290 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_0290 IPR005119 LysR, substrate-binding YPDSF_0290 IPR000847 Transcription regulator HTH, LysR YPDSF_0290 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0291 IPR012451 Protein of unknown function DUF1656 YPDSF_0292 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YPDSF_0292 IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA YPDSF_0292 IPR006143 RND efflux pump, membrane fusion protein YPDSF_0293 IPR023706 Para-hydroxybenzoic acid efflux pump, subunit AaeB YPDSF_0293 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein YPDSF_0294 IPR016161 Aldehyde/histidinol dehydrogenase YPDSF_0294 IPR016160 Aldehyde dehydrogenase, cysteine active site YPDSF_0294 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPDSF_0294 IPR016162 Aldehyde dehydrogenase, N-terminal YPDSF_0294 IPR010102 Succinate semialdehyde dehydrogenase YPDSF_0294 IPR015590 Aldehyde dehydrogenase domain YPDSF_0294 IPR016163 Aldehyde dehydrogenase, C-terminal YPDSF_0295 IPR016160 Aldehyde dehydrogenase, cysteine active site YPDSF_0295 IPR015590 Aldehyde dehydrogenase domain YPDSF_0295 IPR016162 Aldehyde dehydrogenase, N-terminal YPDSF_0295 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPDSF_0295 IPR010102 Succinate semialdehyde dehydrogenase YPDSF_0295 IPR016161 Aldehyde/histidinol dehydrogenase YPDSF_0295 IPR016163 Aldehyde dehydrogenase, C-terminal YPDSF_0297 IPR000468 Barstar (barnase inhibitor) YPDSF_0297 IPR035905 Barstar-like superfamily YPDSF_0298 IPR023153 PSPTO4464-like domain superfamily YPDSF_0298 IPR006839 Ribosome-associated, YjgA YPDSF_0299 IPR002510 Metalloprotease TldD/PmbA YPDSF_0299 IPR035068 Metalloprotease TldD/PmbA, N-terminal YPDSF_0299 IPR036059 Metalloprotease TldD/PmbA superfamily YPDSF_0301 IPR010980 Cytochrome c/b562 YPDSF_0301 IPR009155 Cytochrome b562 YPDSF_0302 IPR023459 Transcription elongation factor GreA/GreB family YPDSF_0302 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal YPDSF_0302 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain YPDSF_0302 IPR028625 Regulator of nucleoside diphosphate kinase YPDSF_0302 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily YPDSF_0303 IPR012769 Trehalose-6-phosphate hydrolase YPDSF_0303 IPR017853 Glycoside hydrolase superfamily YPDSF_0303 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPDSF_0303 IPR013780 Glycosyl hydrolase, all-beta YPDSF_0303 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) YPDSF_0304 IPR003352 Phosphotransferase system, EIIC YPDSF_0304 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site YPDSF_0304 IPR036878 Glucose permease domain IIB YPDSF_0304 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component YPDSF_0304 IPR011296 Phosphotransferase system, trehalose-specific IIBC component YPDSF_0304 IPR001996 Phosphotransferase system, IIB component, type 1 YPDSF_0304 IPR013013 Phosphotransferase system, EIIC component, type 1 YPDSF_0305 IPR012771 Trehalose operon repressor YPDSF_0305 IPR028082 Periplasmic binding protein-like I YPDSF_0305 IPR000843 LacI-type HTH domain YPDSF_0305 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPDSF_0307 IPR006056 RidA family YPDSF_0307 IPR006175 YjgF/YER057c/UK114 family YPDSF_0307 IPR035959 RutC-like superfamily YPDSF_0307 IPR019897 RidA, conserved site YPDSF_0308 IPR036792 Aspartate carbamoyltransferase regulatory subunit, C-terminal domain superfamily YPDSF_0308 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal YPDSF_0308 IPR002801 Aspartate transcarbamylase regulatory subunit YPDSF_0308 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal YPDSF_0308 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily YPDSF_0309 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding YPDSF_0309 IPR002082 Aspartate carbamoyltransferase YPDSF_0309 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily YPDSF_0309 IPR006130 Aspartate/ornithine carbamoyltransferase YPDSF_0309 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain YPDSF_0310 IPR000032 Phosphocarrier protein HPr-like YPDSF_0310 IPR002114 Phosphotransferase system, HPr serine phosphorylation site YPDSF_0310 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YPDSF_0310 IPR035895 HPr-like superfamily YPDSF_0311 IPR005337 RapZ-like family YPDSF_0311 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0312 IPR016152 Phosphotransferase/anion transporter YPDSF_0312 IPR002178 PTS EIIA type-2 domain YPDSF_0312 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN YPDSF_0313 IPR036567 Ribosome hibernation promotion factor-like YPDSF_0313 IPR003489 Ribosome hibernation promoting factor/RaiA YPDSF_0314 IPR036567 Ribosome hibernation promotion factor-like YPDSF_0314 IPR003489 Ribosome hibernation promoting factor/RaiA YPDSF_0315 IPR007046 RNA polymerase sigma factor 54, core-binding domain YPDSF_0315 IPR000394 RNA polymerase sigma factor 54 YPDSF_0315 IPR007634 RNA polymerase sigma factor 54, DNA-binding YPDSF_0315 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily YPDSF_0316 IPR003439 ABC transporter-like YPDSF_0316 IPR017871 ABC transporter, conserved site YPDSF_0316 IPR003593 AAA+ ATPase domain YPDSF_0316 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal YPDSF_0316 IPR030921 LPS export ABC transporter, ATP-binding protein LptB YPDSF_0316 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0317 IPR005653 Organic solvent tolerance-like, N-terminal YPDSF_0317 IPR014340 Lipopolysaccharide export system protein LptA YPDSF_0318 IPR010664 Lipopolysaccharide assembly, LptC-related YPDSF_0318 IPR026265 Lipopolysaccharide export system protein LptC YPDSF_0319 IPR036412 HAD-like superfamily YPDSF_0319 IPR023214 HAD superfamily YPDSF_0319 IPR010023 KdsC family YPDSF_0320 IPR035474 KpsF-like, SIS domain YPDSF_0320 IPR001347 Sugar isomerase (SIS) YPDSF_0320 IPR000644 CBS domain YPDSF_0320 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type YPDSF_0321 IPR004837 Sodium/calcium exchanger membrane region YPDSF_0321 IPR004481 Sodium/potassium/calcium exchanger YPDSF_0322 IPR003593 AAA+ ATPase domain YPDSF_0322 IPR003439 ABC transporter-like YPDSF_0322 IPR017871 ABC transporter, conserved site YPDSF_0322 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0322 IPR030296 Probable ABC transporter ATP-binding protein MlaF/Mkl YPDSF_0323 IPR030802 ABC transporter permease MalE YPDSF_0323 IPR003453 ABC transport permease subunit MlaE, Proteobacteria YPDSF_0324 IPR003399 Mce/MlaD YPDSF_0324 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD YPDSF_0325 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC YPDSF_0325 IPR042245 Tgt2/MlaC superfamily YPDSF_0326 IPR036513 STAS domain superfamily YPDSF_0326 IPR002645 STAS domain YPDSF_0327 IPR002634 BolA protein YPDSF_0327 IPR036065 BolA-like superfamily YPDSF_0328 IPR001986 Enolpyruvate transferase domain YPDSF_0328 IPR036968 Enolpyruvate transferase domain superfamily YPDSF_0328 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YPDSF_0328 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta YPDSF_0329 IPR036034 PDZ superfamily YPDSF_0329 IPR001940 Peptidase S1C YPDSF_0329 IPR001478 PDZ domain YPDSF_0329 IPR011783 Peptidase S1C, DegS YPDSF_0329 IPR009003 Peptidase S1, PA clan YPDSF_0330 IPR002686 Transposase IS200-like YPDSF_0330 IPR036515 Transposase IS200-like superfamily YPDSF_0331 IPR036034 PDZ superfamily YPDSF_0331 IPR011782 Peptidase S1C, Do YPDSF_0331 IPR009003 Peptidase S1, PA clan YPDSF_0331 IPR001478 PDZ domain YPDSF_0331 IPR001940 Peptidase S1C YPDSF_0332 IPR009386 Protein of unknown function DUF1043 YPDSF_0333 IPR005654 ATPase, AFG1-like YPDSF_0333 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0333 IPR030870 Cell division protein ZapE YPDSF_0334 IPR005822 Ribosomal protein L13 YPDSF_0334 IPR036899 Ribosomal protein L13 superfamily YPDSF_0334 IPR023563 Ribosomal protein L13, conserved site YPDSF_0334 IPR005823 Ribosomal protein L13, bacterial-type YPDSF_0335 IPR020568 Ribosomal protein S5 domain 2-type fold YPDSF_0335 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPDSF_0335 IPR000754 Ribosomal protein S9 YPDSF_0335 IPR023035 Ribosomal protein S9, bacterial/plastid YPDSF_0335 IPR020574 Ribosomal protein S9, conserved site YPDSF_0336 IPR010987 Glutathione S-transferase, C-terminal-like YPDSF_0336 IPR040079 Glutathione Transferase family YPDSF_0336 IPR004045 Glutathione S-transferase, N-terminal YPDSF_0336 IPR004046 Glutathione S-transferase, C-terminal YPDSF_0336 IPR034341 Stringent starvation protein A, N-terminal YPDSF_0336 IPR036249 Thioredoxin-like superfamily YPDSF_0336 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YPDSF_0337 IPR036760 SspB-like superfamily YPDSF_0337 IPR007481 Stringent starvation protein B YPDSF_0339 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 YPDSF_0339 IPR009051 Alpha-helical ferredoxin YPDSF_0339 IPR023753 FAD/NAD(P)-binding domain YPDSF_0339 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_0339 IPR028261 Dihydroprymidine dehydrogenase domain II YPDSF_0339 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPDSF_0340 IPR029055 Nucleophile aminohydrolases, N-terminal YPDSF_0340 IPR002932 Glutamate synthase domain YPDSF_0340 IPR017932 Glutamine amidotransferase type 2 domain YPDSF_0340 IPR002489 Glutamate synthase, alpha subunit, C-terminal YPDSF_0340 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily YPDSF_0340 IPR013785 Aldolase-type TIM barrel YPDSF_0340 IPR006982 Glutamate synthase, central-N YPDSF_0341 IPR006638 Elp3/MiaB/NifB YPDSF_0341 IPR032432 Radical SAM, C-terminal extension YPDSF_0341 IPR007197 Radical SAM YPDSF_0341 IPR023404 Radical SAM, alpha/beta horseshoe YPDSF_0341 IPR005911 Protein YhcC-like YPDSF_0341 IPR039661 ELP3/YhcC YPDSF_0342 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_0342 IPR005467 Histidine kinase domain YPDSF_0342 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPDSF_0342 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPDSF_0342 IPR040642 Histidine kinase receptor ArcB, transmembrane domain YPDSF_0342 IPR013767 PAS fold YPDSF_0342 IPR000014 PAS domain YPDSF_0342 IPR000700 PAS-associated, C-terminal YPDSF_0342 IPR035965 PAS domain superfamily YPDSF_0342 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPDSF_0342 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPDSF_0342 IPR003594 Histidine kinase/HSP90-like ATPase YPDSF_0342 IPR001789 Signal transduction response regulator, receiver domain YPDSF_0342 IPR036641 HPT domain superfamily YPDSF_0342 IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB YPDSF_0342 IPR011006 CheY-like superfamily YPDSF_0342 IPR027460 Aerobic respiration control sensor protein ArcB, transmembrane domain superfamily YPDSF_0345 IPR011812 Biosynthetic peptidoglycan transglycosylase YPDSF_0345 IPR023346 Lysozyme-like domain superfamily YPDSF_0345 IPR036950 Penicillin binding protein transglycosylase domain YPDSF_0345 IPR001264 Glycosyl transferase, family 51 YPDSF_0346 IPR007055 BON domain YPDSF_0346 IPR014004 Transport-associated and nodulation domain, bacteria YPDSF_0347 IPR023070 DnaA initiator-associating protein YPDSF_0347 IPR001347 Sugar isomerase (SIS) YPDSF_0347 IPR035461 GmhA/DiaA YPDSF_0348 IPR011335 Restriction endonuclease type II-like YPDSF_0348 IPR011856 tRNA endonuclease-like domain superfamily YPDSF_0348 IPR003509 Uncharacterised protein family UPF0102 YPDSF_0349 IPR028082 Periplasmic binding protein-like I YPDSF_0349 IPR011990 Tetratricopeptide-like helical domain superfamily YPDSF_0349 IPR007443 Penicillin-binding protein activator LpoA YPDSF_0350 IPR035996 Tetrapyrrole methylase superfamily YPDSF_0350 IPR000878 Tetrapyrrole methylase YPDSF_0350 IPR014776 Tetrapyrrole methylase, subdomain 2 YPDSF_0350 IPR018063 SAM-dependent methyltransferase RsmI, conserved site YPDSF_0350 IPR014777 Tetrapyrrole methylase, subdomain 1 YPDSF_0350 IPR008189 rRNA small subunit methyltransferase I YPDSF_0351 IPR014710 RmlC-like jelly roll fold YPDSF_0351 IPR012093 Pirin YPDSF_0351 IPR011051 RmlC-like cupin domain superfamily YPDSF_0351 IPR003829 Pirin, N-terminal domain YPDSF_0351 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain YPDSF_0352 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_0352 IPR005119 LysR, substrate-binding YPDSF_0352 IPR000847 Transcription regulator HTH, LysR YPDSF_0352 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0353 IPR016639 Glutathione S-transferase Omega/GSH YPDSF_0353 IPR036249 Thioredoxin-like superfamily YPDSF_0353 IPR040079 Glutathione Transferase family YPDSF_0353 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YPDSF_0353 IPR004045 Glutathione S-transferase, N-terminal YPDSF_0353 IPR010987 Glutathione S-transferase, C-terminal-like YPDSF_0354 IPR032808 DoxX family YPDSF_0356 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III YPDSF_0357 IPR010279 Inner membrane protein YqjD/ElaB YPDSF_0360 IPR026574 Modulator protein MzrA YPDSF_0360 IPR027398 SecD export protein N-terminal TM domain YPDSF_0361 IPR032818 DedA family YPDSF_0361 IPR032816 SNARE associated Golgi protein YPDSF_0363 IPR011711 GntR, C-terminal YPDSF_0363 IPR008920 Transcription regulator FadR/GntR, C-terminal YPDSF_0363 IPR000524 Transcription regulator HTH, GntR YPDSF_0363 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0363 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_0366 IPR032466 Metal-dependent hydrolase YPDSF_0366 IPR003766 Uronate isomerase YPDSF_0367 IPR023668 Altronate oxidoreductase YPDSF_0367 IPR013131 Mannitol dehydrogenase, N-terminal YPDSF_0367 IPR036291 NAD(P)-binding domain superfamily YPDSF_0367 IPR013118 Mannitol dehydrogenase, C-terminal YPDSF_0367 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPDSF_0367 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPDSF_0368 IPR007392 D-galactarate/Altronate dehydratase, C-terminal YPDSF_0368 IPR013974 SAF domain YPDSF_0369 IPR026267 Inner membrane protein YgjV YPDSF_0369 IPR019629 Uncharacterised protein family HI1736/YgjV YPDSF_0370 IPR002686 Transposase IS200-like YPDSF_0370 IPR036515 Transposase IS200-like superfamily YPDSF_0371 IPR001991 Sodium:dicarboxylate symporter YPDSF_0371 IPR036458 Sodium:dicarboxylate symporter superfamily YPDSF_0371 IPR023025 Serine/threonine transporter SstT YPDSF_0372 IPR000683 Oxidoreductase, N-terminal YPDSF_0372 IPR036291 NAD(P)-binding domain superfamily YPDSF_0373 IPR002725 Protein of unknown function DUF45 YPDSF_0374 IPR005546 Autotransporter beta-domain YPDSF_0374 IPR036709 Autotransporter beta-domain superfamily YPDSF_0374 IPR006315 Outer membrane autotransporter barrel YPDSF_0374 IPR011050 Pectin lyase fold/virulence factor YPDSF_0375 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD YPDSF_0375 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPDSF_0375 IPR007848 Methyltransferase small domain YPDSF_0375 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_0376 IPR023753 FAD/NAD(P)-binding domain YPDSF_0376 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_0376 IPR013785 Aldolase-type TIM barrel YPDSF_0376 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal YPDSF_0377 IPR005325 Protein of unknown function DUF308, membrane YPDSF_0383 IPR003325 TerD domain YPDSF_0384 IPR036465 von Willebrand factor A-like domain superfamily YPDSF_0384 IPR002035 von Willebrand factor, type A YPDSF_0384 IPR011392 Tellurite resistance, TerY YPDSF_0385 IPR005565 Haemolysin activator HlyB, C-terminal YPDSF_0385 IPR034746 POTRA domain YPDSF_0385 IPR035251 ShlB, POTRA domain YPDSF_0385 IPR027282 Two partner secretion pathway transporter YPDSF_0385 IPR013686 Polypeptide-transport-associated, ShlB-type YPDSF_0386 IPR006914 VENN motif-containing domain YPDSF_0386 IPR011050 Pectin lyase fold/virulence factor YPDSF_0386 IPR012334 Pectin lyase fold YPDSF_0386 IPR025157 Hemagglutinin repeat YPDSF_0386 IPR008638 Filamentous haemagglutinin, N-terminal YPDSF_0386 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPDSF_0386 IPR024973 ESPR domain YPDSF_0387 IPR011050 Pectin lyase fold/virulence factor YPDSF_0387 IPR006914 VENN motif-containing domain YPDSF_0387 IPR012334 Pectin lyase fold YPDSF_0387 IPR025157 Hemagglutinin repeat YPDSF_0387 IPR008638 Filamentous haemagglutinin, N-terminal YPDSF_0387 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPDSF_0387 IPR024973 ESPR domain YPDSF_0388 IPR011050 Pectin lyase fold/virulence factor YPDSF_0388 IPR008638 Filamentous haemagglutinin, N-terminal YPDSF_0388 IPR025157 Hemagglutinin repeat YPDSF_0388 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPDSF_0388 IPR006914 VENN motif-containing domain YPDSF_0388 IPR024973 ESPR domain YPDSF_0388 IPR012334 Pectin lyase fold YPDSF_0389 IPR024973 ESPR domain YPDSF_0389 IPR011050 Pectin lyase fold/virulence factor YPDSF_0389 IPR006914 VENN motif-containing domain YPDSF_0389 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPDSF_0389 IPR008638 Filamentous haemagglutinin, N-terminal YPDSF_0389 IPR025157 Hemagglutinin repeat YPDSF_0389 IPR012334 Pectin lyase fold YPDSF_0390 IPR025157 Hemagglutinin repeat YPDSF_0390 IPR006914 VENN motif-containing domain YPDSF_0390 IPR011050 Pectin lyase fold/virulence factor YPDSF_0390 IPR012334 Pectin lyase fold YPDSF_0390 IPR024973 ESPR domain YPDSF_0390 IPR008638 Filamentous haemagglutinin, N-terminal YPDSF_0390 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPDSF_0394 IPR003593 AAA+ ATPase domain YPDSF_0394 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0394 IPR005116 Transport-associated OB, type 1 YPDSF_0394 IPR003439 ABC transporter-like YPDSF_0394 IPR017871 ABC transporter, conserved site YPDSF_0394 IPR008995 Molybdate/tungstate binding, C-terminal YPDSF_0394 IPR040582 MalK, OB fold domain YPDSF_0395 IPR012341 Six-hairpin glycosidase-like superfamily YPDSF_0395 IPR033432 Glycosyl hydrolase 36, catalytic domain YPDSF_0395 IPR008928 Six-hairpin glycosidase superfamily YPDSF_0396 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPDSF_0396 IPR028082 Periplasmic binding protein-like I YPDSF_0396 IPR000843 LacI-type HTH domain YPDSF_0397 IPR006059 Bacterial extracellular solute-binding protein YPDSF_0398 IPR035906 MetI-like superfamily YPDSF_0398 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_0399 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_0399 IPR035906 MetI-like superfamily YPDSF_0401 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily YPDSF_0401 IPR001764 Glycoside hydrolase, family 3, N-terminal YPDSF_0401 IPR026891 Fibronectin type III-like domain YPDSF_0401 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily YPDSF_0401 IPR002772 Glycoside hydrolase family 3 C-terminal domain YPDSF_0401 IPR019800 Glycoside hydrolase, family 3, active site YPDSF_0401 IPR013783 Immunoglobulin-like fold YPDSF_0401 IPR017853 Glycoside hydrolase superfamily YPDSF_0403 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein YPDSF_0404 IPR030196 Multidrug resistance protein MdtN YPDSF_0404 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPDSF_0404 IPR005694 Efflux pump membrane protein YPDSF_0412 IPR006175 YjgF/YER057c/UK114 family YPDSF_0412 IPR019897 RidA, conserved site YPDSF_0412 IPR035959 RutC-like superfamily YPDSF_0412 IPR006056 RidA family YPDSF_0416 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_0416 IPR005119 LysR, substrate-binding YPDSF_0416 IPR000847 Transcription regulator HTH, LysR YPDSF_0416 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0417 IPR003593 AAA+ ATPase domain YPDSF_0417 IPR001270 ClpA/B family YPDSF_0417 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_0417 IPR002611 IstB-like ATP-binding protein YPDSF_0417 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0418 IPR006120 Resolvase, HTH domain YPDSF_0418 IPR001584 Integrase, catalytic core YPDSF_0418 IPR012337 Ribonuclease H-like superfamily YPDSF_0418 IPR017894 HTH domain, IS21 transposase-type YPDSF_0418 IPR036397 Ribonuclease H superfamily YPDSF_0427 IPR007631 RNA polymerase sigma factor 70, non-essential domain YPDSF_0427 IPR012760 RNA polymerase sigma factor RpoD, C-terminal YPDSF_0427 IPR000943 RNA polymerase sigma-70 YPDSF_0427 IPR009042 RNA polymerase sigma-70 region 1.2 YPDSF_0427 IPR007127 RNA polymerase sigma factor 70, region 1.1 YPDSF_0427 IPR028630 RNA polymerase sigma factor RpoD YPDSF_0427 IPR014284 RNA polymerase sigma-70 like domain YPDSF_0427 IPR013325 RNA polymerase sigma factor, region 2 YPDSF_0427 IPR013324 RNA polymerase sigma factor, region 3/4-like YPDSF_0427 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0427 IPR042189 Sigma-70 factor, region 1.1 superfamily YPDSF_0427 IPR007630 RNA polymerase sigma-70 region 4 YPDSF_0427 IPR007624 RNA polymerase sigma-70 region 3 YPDSF_0427 IPR007627 RNA polymerase sigma-70 region 2 YPDSF_0428 IPR030846 DNA primase DnaG, bacteria YPDSF_0428 IPR002694 Zinc finger, CHC2-type YPDSF_0428 IPR006171 TOPRIM domain YPDSF_0428 IPR034151 Bacterial DnaG primase, TOPRIM domain YPDSF_0428 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily YPDSF_0428 IPR013264 DNA primase, catalytic core, N-terminal YPDSF_0428 IPR006295 DNA primase, DnaG YPDSF_0428 IPR036977 DNA Primase, CHC2-type zinc finger YPDSF_0428 IPR013173 DNA primase DnaG, DnaB-binding domain YPDSF_0428 IPR019475 DNA primase, DnaB-helicase binding domain YPDSF_0428 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal YPDSF_0429 IPR001911 Ribosomal protein S21 YPDSF_0429 IPR018278 Ribosomal protein S21, conserved site YPDSF_0429 IPR038380 Ribosomal protein S21 superfamily YPDSF_0430 IPR000905 Gcp-like domain YPDSF_0430 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD YPDSF_0430 IPR017860 Peptidase M22, conserved site YPDSF_0430 IPR017861 Kae1/TsaD family YPDSF_0431 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY YPDSF_0432 IPR006157 Dihydroneopterin aldolase/epimerase domain YPDSF_0432 IPR006156 Dihydroneopterin aldolase YPDSF_0433 IPR003824 Undecaprenyl-diphosphatase UppP YPDSF_0434 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain YPDSF_0434 IPR012006 tRNA nucleotidyltransferase, proteobacteria YPDSF_0434 IPR003607 HD/PDEase domain YPDSF_0434 IPR006674 HD domain YPDSF_0434 IPR002646 Poly A polymerase, head domain YPDSF_0435 IPR003646 SH3-like domain, bacterial-type YPDSF_0435 IPR016476 SH3 domain protein YPDSF_0436 IPR033469 CYTH-like domain superfamily YPDSF_0436 IPR023577 CYTH domain YPDSF_0436 IPR039013 Inorganic triphosphatase YgiF YPDSF_0436 IPR007899 CHAD domain YPDSF_0437 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase YPDSF_0437 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain YPDSF_0437 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme YPDSF_0438 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_0438 IPR004821 Cytidyltransferase-like domain YPDSF_0438 IPR011914 RfaE bifunctional protein, domain II YPDSF_0438 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPDSF_0438 IPR023030 Bifunctional protein HldE YPDSF_0438 IPR011611 Carbohydrate kinase PfkB YPDSF_0438 IPR011913 RfaE bifunctional protein, domain I YPDSF_0438 IPR029056 Ribokinase-like YPDSF_0439 IPR002293 Amino acid/polyamine transporter I YPDSF_0440 IPR007475 Ubiquinone biosynthesis accessory factor UbiK YPDSF_0441 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily YPDSF_0441 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB YPDSF_0442 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type YPDSF_0442 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B YPDSF_0443 IPR016185 Pre-ATP-grasp domain superfamily YPDSF_0443 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain YPDSF_0444 IPR009576 Biofilm formation YgiB YPDSF_0445 IPR010130 Type I secretion outer membrane protein, TolC YPDSF_0445 IPR003423 Outer membrane efflux protein YPDSF_0446 IPR015797 NUDIX hydrolase-like domain superfamily YPDSF_0446 IPR020084 NUDIX hydrolase, conserved site YPDSF_0446 IPR004385 Nucleoside diphosphate pyrophosphatase YPDSF_0446 IPR000086 NUDIX hydrolase domain YPDSF_0447 IPR009659 Protein of unknown function DUF1249 YPDSF_0448 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA YPDSF_0448 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPDSF_0448 IPR029052 Metallo-dependent phosphatase-like YPDSF_0449 IPR029058 Alpha/Beta hydrolase fold YPDSF_0449 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA YPDSF_0450 IPR001241 DNA topoisomerase, type IIA YPDSF_0450 IPR002288 DNA gyrase B subunit, C-terminal YPDSF_0450 IPR013760 DNA topoisomerase, type IIA-like domain superfamily YPDSF_0450 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 YPDSF_0450 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal YPDSF_0450 IPR020568 Ribosomal protein S5 domain 2-type fold YPDSF_0450 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_0450 IPR018522 DNA topoisomerase, type IIA, conserved site YPDSF_0450 IPR003594 Histidine kinase/HSP90-like ATPase YPDSF_0450 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative YPDSF_0450 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPDSF_0450 IPR006171 TOPRIM domain YPDSF_0451 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_0451 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0451 IPR000847 Transcription regulator HTH, LysR YPDSF_0451 IPR005119 LysR, substrate-binding YPDSF_0452 IPR029039 Flavoprotein-like superfamily YPDSF_0452 IPR003680 Flavodoxin-like fold YPDSF_0454 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat YPDSF_0454 IPR013760 DNA topoisomerase, type IIA-like domain superfamily YPDSF_0454 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal YPDSF_0454 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta YPDSF_0454 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily YPDSF_0454 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative YPDSF_0454 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal YPDSF_0455 IPR002123 Phospholipid/glycerol acyltransferase YPDSF_0455 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase YPDSF_0457 IPR011706 Multicopper oxidase, type 2 YPDSF_0457 IPR008972 Cupredoxin YPDSF_0457 IPR011707 Multicopper oxidase, type 3 YPDSF_0457 IPR026589 Cell division protein FtsP YPDSF_0457 IPR006311 Twin-arginine translocation pathway, signal sequence YPDSF_0458 IPR013704 Uncharacterised protein family UPF0313, N-terminal YPDSF_0458 IPR022946 Uncharacterised protein family UPF0313 YPDSF_0458 IPR023404 Radical SAM, alpha/beta horseshoe YPDSF_0458 IPR024560 Uncharacterised protein family UPF0313, C-terminal YPDSF_0458 IPR020612 Methylthiotransferase, conserved site YPDSF_0458 IPR006638 Elp3/MiaB/NifB YPDSF_0458 IPR007197 Radical SAM YPDSF_0459 IPR024560 Uncharacterised protein family UPF0313, C-terminal YPDSF_0459 IPR022946 Uncharacterised protein family UPF0313 YPDSF_0459 IPR023404 Radical SAM, alpha/beta horseshoe YPDSF_0459 IPR007197 Radical SAM YPDSF_0459 IPR020612 Methylthiotransferase, conserved site YPDSF_0459 IPR013704 Uncharacterised protein family UPF0313, N-terminal YPDSF_0459 IPR006638 Elp3/MiaB/NifB YPDSF_0460 IPR020471 Aldo/keto reductase YPDSF_0460 IPR036812 NADP-dependent oxidoreductase domain superfamily YPDSF_0460 IPR023210 NADP-dependent oxidoreductase domain YPDSF_0460 IPR018170 Aldo/keto reductase, conserved site YPDSF_0462 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YPDSF_0462 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA YPDSF_0463 IPR009057 Homeobox-like domain superfamily YPDSF_0463 IPR009594 Transcription regulator HTH, AraC, N-terminal YPDSF_0463 IPR018060 DNA binding HTH domain, AraC-type YPDSF_0464 IPR032816 SNARE associated Golgi protein YPDSF_0464 IPR032818 DedA family YPDSF_0465 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_0465 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YPDSF_0465 IPR006233 Cystathionine beta-lyase, bacterial YPDSF_0465 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_0465 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_0466 IPR014164 TonB-system energizer ExbB type-1 YPDSF_0466 IPR002898 MotA/TolQ/ExbB proton channel YPDSF_0467 IPR014170 TonB system transport protein ExbD type-1 YPDSF_0467 IPR003400 Biopolymer transport protein ExbD/TolR YPDSF_0474 IPR022399 Helicase/secretion neighbourhood ATPase YPDSF_0474 IPR001482 Type II/IV secretion system protein YPDSF_0474 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0476 IPR007055 BON domain YPDSF_0476 IPR001775 GspD/PilQ family YPDSF_0476 IPR032789 Pilus formation protein, N-terminal YPDSF_0476 IPR004846 Type II/III secretion system YPDSF_0476 IPR014004 Transport-associated and nodulation domain, bacteria YPDSF_0477 IPR014004 Transport-associated and nodulation domain, bacteria YPDSF_0477 IPR004846 Type II/III secretion system YPDSF_0477 IPR032789 Pilus formation protein, N-terminal YPDSF_0477 IPR001775 GspD/PilQ family YPDSF_0477 IPR007055 BON domain YPDSF_0481 IPR018030 Fimbrial membrane usher, conserved site YPDSF_0481 IPR037224 PapC, N-terminal domain superfamily YPDSF_0481 IPR000015 Outer membrane usher protein YPDSF_0481 IPR025885 PapC, N-terminal domain YPDSF_0481 IPR025949 PapC-like, C-terminal domain YPDSF_0481 IPR042186 Outer membrane usher protein FimD, plug domain YPDSF_0482 IPR013783 Immunoglobulin-like fold YPDSF_0482 IPR016147 Pili assembly chaperone, N-terminal YPDSF_0482 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPDSF_0482 IPR001829 Pili assembly chaperone, bacterial YPDSF_0482 IPR008962 PapD-like superfamily YPDSF_0482 IPR018046 Pili assembly chaperone, conserved site YPDSF_0482 IPR016148 Pili assembly chaperone, C-terminal YPDSF_0485 IPR002491 ABC transporter periplasmic binding domain YPDSF_0489 IPR001712 Type III secretion system FHIPEP YPDSF_0489 IPR006301 Flagellar biosynthesis protein FlhA YPDSF_0489 IPR042194 FHIPEP, domain 1 YPDSF_0489 IPR042196 FHIPEP, domain 4 YPDSF_0489 IPR042193 FHIPEP, domain 3 YPDSF_0489 IPR025505 FHIPEP conserved site YPDSF_0490 IPR006136 Flagellar biosynthetic protein FlhB YPDSF_0490 IPR006135 Type III secretion system substrate exporter YPDSF_0490 IPR029025 Type III secretion system substrate exporter, C-terminal YPDSF_0491 IPR006303 Flagellar biosynthesis protein FliR YPDSF_0491 IPR002010 Type III secretion system inner membrane R protein YPDSF_0492 IPR006305 Flagellar biosynthesis protein FliQ YPDSF_0492 IPR002191 Bacterial export protein family 3 YPDSF_0493 IPR005837 Flagellar transport protein FliP YPDSF_0493 IPR005838 Type III secretion system inner membrane P protein YPDSF_0494 IPR036429 SpoA-like superfamily YPDSF_0494 IPR001543 Surface presentation of antigen (SpoA) YPDSF_0494 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb YPDSF_0494 IPR012826 Flagellar motor switch FliN YPDSF_0496 IPR011006 CheY-like superfamily YPDSF_0496 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPDSF_0496 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPDSF_0496 IPR002078 RNA polymerase sigma factor 54 interaction domain YPDSF_0496 IPR001789 Signal transduction response regulator, receiver domain YPDSF_0496 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0496 IPR003593 AAA+ ATPase domain YPDSF_0496 IPR002197 DNA binding HTH domain, Fis-type YPDSF_0496 IPR025944 Sigma-54 interaction domain, conserved site YPDSF_0496 IPR009057 Homeobox-like domain superfamily YPDSF_0497 IPR001624 Flagellar hook-basal body complex protein FliE YPDSF_0498 IPR006182 Secretory protein YscJ/FliF YPDSF_0498 IPR013556 Flagellar M-ring C-terminal YPDSF_0498 IPR000067 Flagellar M-ring protein FliF YPDSF_0501 IPR003593 AAA+ ATPase domain YPDSF_0501 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPDSF_0501 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPDSF_0501 IPR020005 Flagellar export ATPase FliI, clade 1 YPDSF_0501 IPR005714 ATPase, type III secretion system, FliI/YscN YPDSF_0501 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0501 IPR032463 ATPase, type III secretion system, FliI YPDSF_0501 IPR040627 T3SS EscN ATPase, C-terminal YPDSF_0505 IPR013974 SAF domain YPDSF_0505 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal YPDSF_0505 IPR039246 Flagellar protein FlgA YPDSF_0506 IPR019776 Flagellar basal body rod protein, conserved site YPDSF_0506 IPR001444 Flagellar basal body rod protein, N-terminal YPDSF_0506 IPR006300 Flagellar basal-body rod protein FlgB YPDSF_0507 IPR019776 Flagellar basal body rod protein, conserved site YPDSF_0507 IPR001444 Flagellar basal body rod protein, N-terminal YPDSF_0507 IPR006299 Flagellar basal-body rod protein FlgC YPDSF_0507 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPDSF_0508 IPR025963 FlgD Tudor-like domain YPDSF_0508 IPR025965 FlgD Ig-like domain YPDSF_0508 IPR005648 Flagellar hook capping protein YPDSF_0509 IPR019776 Flagellar basal body rod protein, conserved site YPDSF_0509 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPDSF_0509 IPR001444 Flagellar basal body rod protein, N-terminal YPDSF_0509 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPDSF_0509 IPR011491 Flagellar hook protein FlgE YPDSF_0509 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPDSF_0509 IPR037058 Flagellar hook protein FlgE superfamily YPDSF_0510 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPDSF_0510 IPR019776 Flagellar basal body rod protein, conserved site YPDSF_0510 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPDSF_0510 IPR001444 Flagellar basal body rod protein, N-terminal YPDSF_0510 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPDSF_0511 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPDSF_0511 IPR012834 Flagellar basal-body rod FlgG YPDSF_0511 IPR019776 Flagellar basal body rod protein, conserved site YPDSF_0511 IPR001444 Flagellar basal body rod protein, N-terminal YPDSF_0511 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPDSF_0511 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPDSF_0512 IPR000527 Flagellar L-ring protein YPDSF_0513 IPR001782 Flagellar P-ring protein YPDSF_0515 IPR001444 Flagellar basal body rod protein, N-terminal YPDSF_0515 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPDSF_0515 IPR002371 Flagellar hook-associated protein 1 YPDSF_0519 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0519 IPR039420 Transcriptional regulatory protein WalR-like YPDSF_0519 IPR016032 Signal transduction response regulator, C-terminal effector YPDSF_0519 IPR011990 Tetratricopeptide-like helical domain superfamily YPDSF_0519 IPR040970 CadC C-terminal domain 1 YPDSF_0519 IPR001867 OmpR/PhoB-type DNA-binding domain YPDSF_0520 IPR001492 Flagellin YPDSF_0520 IPR042187 Flagellin, C-terminal domain, subdomain 2 YPDSF_0520 IPR001029 Flagellin, D0/D1 domain YPDSF_0521 IPR001492 Flagellin YPDSF_0521 IPR042187 Flagellin, C-terminal domain, subdomain 2 YPDSF_0521 IPR001029 Flagellin, D0/D1 domain YPDSF_0522 IPR012337 Ribonuclease H-like superfamily YPDSF_0522 IPR036397 Ribonuclease H superfamily YPDSF_0522 IPR001584 Integrase, catalytic core YPDSF_0522 IPR025948 HTH-like domain YPDSF_0522 IPR038965 Transposase InsF-like YPDSF_0523 IPR018043 Sodium:galactoside symporter, conserved site YPDSF_0523 IPR039672 Lactose permease-like YPDSF_0523 IPR020846 Major facilitator superfamily domain YPDSF_0523 IPR036259 MFS transporter superfamily YPDSF_0523 IPR001927 Sodium:galactoside symporter YPDSF_0524 IPR010105 TonB-dependent siderophore receptor YPDSF_0524 IPR010917 TonB-dependent receptor, conserved site YPDSF_0524 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPDSF_0524 IPR000531 TonB-dependent receptor-like, beta-barrel YPDSF_0524 IPR037066 TonB-dependent receptor, plug domain superfamily YPDSF_0524 IPR012910 TonB-dependent receptor, plug domain YPDSF_0524 IPR039426 Vitamin B12 transporter BtuB-like YPDSF_0524 IPR010916 TonB box, conserved site YPDSF_0525 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_0525 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase YPDSF_0526 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPDSF_0526 IPR022770 Ferric iron reductase FhuF domain YPDSF_0526 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like YPDSF_0527 IPR016181 Acyl-CoA N-acyltransferase YPDSF_0527 IPR019432 Siderophore biosynthesis protein, conserved domain YPDSF_0528 IPR022770 Ferric iron reductase FhuF domain YPDSF_0528 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPDSF_0528 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like YPDSF_0529 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPDSF_0529 IPR022770 Ferric iron reductase FhuF domain YPDSF_0529 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like YPDSF_0533 IPR000792 Transcription regulator LuxR, C-terminal YPDSF_0533 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0533 IPR016032 Signal transduction response regulator, C-terminal effector YPDSF_0533 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain YPDSF_0533 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily YPDSF_0534 IPR016181 Acyl-CoA N-acyltransferase YPDSF_0534 IPR018311 Autoinducer synthesis, conserved site YPDSF_0534 IPR001690 Autoinducer synthase YPDSF_0535 IPR003675 CAAX prenyl protease 2 YPDSF_0537 IPR024431 Insertion element IS1 protein InsA, helix-turn-helix domain YPDSF_0537 IPR003220 InsA N-terminal domain YPDSF_0542 IPR006690 Outer membrane protein, OmpA-like, conserved site YPDSF_0542 IPR028974 TSP type-3 repeat YPDSF_0542 IPR008722 Outer membrane porin F, N-terminal YPDSF_0542 IPR006664 Outer membrane protein, bacterial YPDSF_0542 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPDSF_0542 IPR006665 OmpA-like domain YPDSF_0542 IPR036737 OmpA-like domain superfamily YPDSF_0545 IPR019489 Clp ATPase, C-terminal YPDSF_0545 IPR004176 Clp, N-terminal YPDSF_0545 IPR017729 Type VI secretion system, ATPase ClpV1 YPDSF_0545 IPR003959 ATPase, AAA-type, core YPDSF_0545 IPR036628 Clp, N-terminal domain superfamily YPDSF_0545 IPR003593 AAA+ ATPase domain YPDSF_0545 IPR001270 ClpA/B family YPDSF_0545 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0545 IPR041546 ClpA/ClpB, AAA lid domain YPDSF_0545 IPR018368 ClpA/B, conserved site 1 YPDSF_0549 IPR024431 Insertion element IS1 protein InsA, helix-turn-helix domain YPDSF_0549 IPR009057 Homeobox-like domain superfamily YPDSF_0549 IPR003220 InsA N-terminal domain YPDSF_0550 IPR005063 Transposase, IS1 YPDSF_0554 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal YPDSF_0554 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily YPDSF_0554 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_0554 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_0554 IPR027464 Ornithine decarboxylase, N-terminal YPDSF_0554 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_0554 IPR000310 Orn/Lys/Arg decarboxylase, major domain YPDSF_0554 IPR011006 CheY-like superfamily YPDSF_0554 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal YPDSF_0554 IPR011193 Ornithine/lysine/arginine decarboxylase YPDSF_0555 IPR025997 Periplasmic binding protein YPDSF_0555 IPR028082 Periplasmic binding protein-like I YPDSF_0556 IPR017871 ABC transporter, conserved site YPDSF_0556 IPR003593 AAA+ ATPase domain YPDSF_0556 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0556 IPR015861 ABC transporter, ribose import, RbsA YPDSF_0556 IPR003439 ABC transporter-like YPDSF_0557 IPR001851 ABC transporter, permease YPDSF_0558 IPR012910 TonB-dependent receptor, plug domain YPDSF_0558 IPR037066 TonB-dependent receptor, plug domain superfamily YPDSF_0558 IPR039423 TonB-dependent receptor-like YPDSF_0560 IPR023346 Lysozyme-like domain superfamily YPDSF_0560 IPR023664 Murein transglycosylase-C YPDSF_0560 IPR024570 Murein transglycosylase-C, N-terminal YPDSF_0560 IPR000189 Prokaryotic transglycosylase, active site YPDSF_0560 IPR008258 Transglycosylase SLT domain 1 YPDSF_0561 IPR036766 Fe(II) trafficking protein YggX superfamily YPDSF_0561 IPR007457 Fe(II) trafficking protein YggX YPDSF_0562 IPR004035 Endonuclease III, iron-sulphur binding site YPDSF_0562 IPR029119 MutY, C-terminal YPDSF_0562 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal YPDSF_0562 IPR000445 Helix-hairpin-helix motif YPDSF_0562 IPR003265 HhH-GPD domain YPDSF_0562 IPR015797 NUDIX hydrolase-like domain superfamily YPDSF_0562 IPR005760 A/G-specific adenine glycosylase MutY YPDSF_0562 IPR011257 DNA glycosylase YPDSF_0562 IPR004036 Endonuclease III-like, conserved site-2 YPDSF_0562 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif YPDSF_0563 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_0563 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type YPDSF_0564 IPR007416 Protein of unknown function DUF469 YPDSF_0565 IPR012338 Beta-lactamase/transpeptidase-like YPDSF_0565 IPR015868 Glutaminase YPDSF_0566 IPR021307 Protein of unknown function DUF2884 YPDSF_0567 IPR021307 Protein of unknown function DUF2884 YPDSF_0568 IPR022742 Serine aminopeptidase, S33 YPDSF_0568 IPR020972 Dermonecrotic/RTX toxin, membrane localization domain YPDSF_0568 IPR038383 CGT/MARTX, cysteine protease (CPD) domain superfamily YPDSF_0568 IPR020974 CGT/MARTX, cysteine protease (CPD) domain YPDSF_0568 IPR029058 Alpha/Beta hydrolase fold YPDSF_0568 IPR011049 Serralysin-like metalloprotease, C-terminal YPDSF_0568 IPR032074 Actin cross-linking domain YPDSF_0568 IPR011509 RtxA toxin YPDSF_0569 IPR023404 Radical SAM, alpha/beta horseshoe YPDSF_0569 IPR004559 Heme chaperone HemW-like YPDSF_0569 IPR010723 HemN, C-terminal YPDSF_0569 IPR034505 Anaerobic coproporphyrinogen-III oxidase YPDSF_0569 IPR006638 Elp3/MiaB/NifB YPDSF_0569 IPR007197 Radical SAM YPDSF_0570 IPR020922 dITP/XTP pyrophosphatase YPDSF_0570 IPR002637 Ham1-like protein YPDSF_0570 IPR029001 Inosine triphosphate pyrophosphatase-like YPDSF_0571 IPR005228 Conserved hypothetical protein CHP00251 YPDSF_0571 IPR003746 Protein of unknown function DUF167 YPDSF_0571 IPR036591 YggU-like superfamily YPDSF_0572 IPR003425 CCB3/YggT YPDSF_0573 IPR000304 Pyrroline-5-carboxylate reductase YPDSF_0573 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal YPDSF_0573 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain YPDSF_0573 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPDSF_0573 IPR036291 NAD(P)-binding domain superfamily YPDSF_0574 IPR029066 PLP-binding barrel YPDSF_0574 IPR011078 Pyridoxal phosphate homeostasis protein YPDSF_0574 IPR001608 Alanine racemase, N-terminal YPDSF_0575 IPR001482 Type II/IV secretion system protein YPDSF_0575 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0575 IPR003593 AAA+ ATPase domain YPDSF_0575 IPR006321 Pilus retraction protein PilT YPDSF_0576 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type YPDSF_0576 IPR017754 Agmatine deiminase YPDSF_0577 IPR036526 Carbon-nitrogen hydrolase superfamily YPDSF_0577 IPR003010 Carbon-nitrogen hydrolase YPDSF_0577 IPR023719 Aliphatic amidase YPDSF_0578 IPR012337 Ribonuclease H-like superfamily YPDSF_0578 IPR005227 Putative pre-16S rRNA nuclease YPDSF_0578 IPR006641 YqgF/RNase H-like domain YPDSF_0578 IPR037027 YqgF/RNase H-like domain superfamily YPDSF_0579 IPR003774 Protein of unknown function UPF0301 YPDSF_0580 IPR006284 Glutathione synthetase, prokaryotic YPDSF_0580 IPR013815 ATP-grasp fold, subdomain 1 YPDSF_0580 IPR016185 Pre-ATP-grasp domain superfamily YPDSF_0580 IPR004215 Prokaryotic glutathione synthetase, N-terminal YPDSF_0580 IPR011761 ATP-grasp fold YPDSF_0580 IPR004218 Prokaryotic glutathione synthetase, ATP-binding YPDSF_0581 IPR029028 Alpha/beta knot methyltransferases YPDSF_0581 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPDSF_0581 IPR015947 PUA-like superfamily YPDSF_0581 IPR006700 Ribosomal RNA small subunit methyltransferase E YPDSF_0583 IPR007346 Endonuclease I YPDSF_0584 IPR035240 SprT-like, zinc ribbon domain YPDSF_0584 IPR023483 Uncharacterised protein family SprT YPDSF_0584 IPR006640 SprT-like YPDSF_0585 IPR002133 S-adenosylmethionine synthetase YPDSF_0585 IPR022628 S-adenosylmethionine synthetase, N-terminal YPDSF_0585 IPR022631 S-adenosylmethionine synthetase, conserved site YPDSF_0585 IPR022630 S-adenosylmethionine synthetase, C-terminal YPDSF_0585 IPR022629 S-adenosylmethionine synthetase, central domain YPDSF_0585 IPR022636 S-adenosylmethionine synthetase superfamily YPDSF_0586 IPR002985 Arginine decarboxylase YPDSF_0586 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site YPDSF_0586 IPR041128 Arginine decarboxylase, C-terminal helical YPDSF_0586 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal YPDSF_0586 IPR029066 PLP-binding barrel YPDSF_0586 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal YPDSF_0586 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site YPDSF_0586 IPR040634 Arginine decarboxylase, helical bundle domain YPDSF_0586 IPR000183 Ornithine/DAP/Arg decarboxylase YPDSF_0587 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily YPDSF_0587 IPR017941 Rieske [2Fe-2S] iron-sulphur domain YPDSF_0588 IPR001915 Peptidase M48 YPDSF_0589 IPR005474 Transketolase, N-terminal YPDSF_0589 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II YPDSF_0589 IPR029061 Thiamin diphosphate-binding fold YPDSF_0589 IPR005478 Transketolase, bacterial-like YPDSF_0589 IPR020826 Transketolase binding site YPDSF_0589 IPR033248 Transketolase, C-terminal domain YPDSF_0589 IPR033247 Transketolase family YPDSF_0589 IPR005475 Transketolase-like, pyrimidine-binding domain YPDSF_0591 IPR006422 D-erythrose-4-phosphate dehydrogenase YPDSF_0591 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family YPDSF_0591 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site YPDSF_0591 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YPDSF_0591 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain YPDSF_0591 IPR036291 NAD(P)-binding domain superfamily YPDSF_0592 IPR001576 Phosphoglycerate kinase YPDSF_0592 IPR015911 Phosphoglycerate kinase, conserved site YPDSF_0592 IPR015824 Phosphoglycerate kinase, N-terminal YPDSF_0592 IPR036043 Phosphoglycerate kinase superfamily YPDSF_0593 IPR013785 Aldolase-type TIM barrel YPDSF_0593 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype YPDSF_0593 IPR000771 Fructose-bisphosphate aldolase, class-II YPDSF_0594 IPR023408 Mechanosensitive ion channel MscS domain superfamily YPDSF_0594 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 YPDSF_0594 IPR006686 Mechanosensitive ion channel MscS, conserved site YPDSF_0594 IPR011066 Mechanosensitive ion channel MscS, C-terminal YPDSF_0594 IPR006685 Mechanosensitive ion channel MscS YPDSF_0594 IPR008910 Conserved TM helix YPDSF_0594 IPR010920 LSM domain superfamily YPDSF_0595 IPR004777 L-lysine exporter/arginine exporter YPDSF_0595 IPR001123 Amino acid exporter protein, LeuE-type YPDSF_0595 IPR023445 Arginine exporter protein ArgO, enterobacteria YPDSF_0596 IPR007497 Protein of unknown function DUF541 YPDSF_0597 IPR000847 Transcription regulator HTH, LysR YPDSF_0597 IPR005119 LysR, substrate-binding YPDSF_0597 IPR023490 HTH-type transcriptional regulator ArgP, Gammaproteobacteria YPDSF_0597 IPR017685 HTH-type transcriptional regulator ArgP YPDSF_0597 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_0597 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0598 IPR004788 Ribose 5-phosphate isomerase, type A YPDSF_0598 IPR037171 NagB/RpiA transferase-like YPDSF_0598 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup YPDSF_0599 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPDSF_0599 IPR002912 ACT domain YPDSF_0599 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPDSF_0599 IPR036291 NAD(P)-binding domain superfamily YPDSF_0599 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPDSF_0599 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPDSF_0600 IPR036515 Transposase IS200-like superfamily YPDSF_0600 IPR002686 Transposase IS200-like YPDSF_0601 IPR037171 NagB/RpiA transferase-like YPDSF_0601 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily YPDSF_0601 IPR002698 5-formyltetrahydrofolate cyclo-ligase YPDSF_0602 IPR007838 Cell division protein ZapA-like YPDSF_0602 IPR023771 Cell division protein ZapA, eubacteria YPDSF_0602 IPR036192 Cell division protein ZapA-like superfamily YPDSF_0603 IPR036255 YgfB-like superfamily YPDSF_0603 IPR011978 Uncharacterised protein family UPF0149 YPDSF_0604 IPR007865 Aminopeptidase P, N-terminal YPDSF_0604 IPR000994 Peptidase M24 YPDSF_0604 IPR036005 Creatinase/aminopeptidase-like YPDSF_0604 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPDSF_0604 IPR001714 Peptidase M24, methionine aminopeptidase YPDSF_0604 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site YPDSF_0605 IPR002938 FAD-binding domain YPDSF_0605 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 YPDSF_0605 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_0605 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site YPDSF_0605 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase YPDSF_0606 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_0606 IPR002938 FAD-binding domain YPDSF_0606 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 YPDSF_0606 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site YPDSF_0607 IPR022903 Glycine cleavage system T protein, bacteria YPDSF_0607 IPR006222 Aminomethyltransferase, folate-binding domain YPDSF_0607 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 YPDSF_0607 IPR028896 Aminomethyltransferase-like YPDSF_0607 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal YPDSF_0607 IPR006223 Glycine cleavage system T protein YPDSF_0607 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain YPDSF_0608 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site YPDSF_0608 IPR033753 Glycine cleavage system H-protein/Simiate YPDSF_0608 IPR002930 Glycine cleavage system H-protein YPDSF_0608 IPR011053 Single hybrid motif YPDSF_0608 IPR000089 Biotin/lipoyl attachment YPDSF_0608 IPR017453 Glycine cleavage system H-protein, subgroup YPDSF_0609 IPR020581 Glycine cleavage system P protein YPDSF_0609 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_0609 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_0609 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_0609 IPR003437 Glycine dehydrogenase (decarboxylating) YPDSF_0615 IPR005744 Hly-III YPDSF_0615 IPR004254 AdipoR/Haemolysin-III-related YPDSF_0617 IPR006222 Aminomethyltransferase, folate-binding domain YPDSF_0617 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal YPDSF_0617 IPR023758 tRNA-modifying protein YgfZ YPDSF_0617 IPR017703 YgfZ/GcvT conserved site YPDSF_0618 IPR005631 Flavinator of succinate dehydrogenase YPDSF_0618 IPR036714 Flavinator of succinate dehydrogenase superfamily YPDSF_0619 IPR009883 Inner membrane protein YgfX YPDSF_0620 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0620 IPR039420 Transcriptional regulatory protein WalR-like YPDSF_0620 IPR001789 Signal transduction response regulator, receiver domain YPDSF_0620 IPR016032 Signal transduction response regulator, C-terminal effector YPDSF_0620 IPR001867 OmpR/PhoB-type DNA-binding domain YPDSF_0620 IPR011006 CheY-like superfamily YPDSF_0621 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_0621 IPR003660 HAMP domain YPDSF_0621 IPR003594 Histidine kinase/HSP90-like ATPase YPDSF_0621 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPDSF_0621 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPDSF_0621 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPDSF_0621 IPR005467 Histidine kinase domain YPDSF_0621 IPR029151 Periplasmic sensor-like domain superfamily YPDSF_0622 IPR010364 Uncharacterised protein family, inner membrane CreD YPDSF_0623 IPR008254 Flavodoxin/nitric oxide synthase YPDSF_0623 IPR010086 Flavodoxin, long chain YPDSF_0623 IPR029039 Flavoprotein-like superfamily YPDSF_0623 IPR001226 Flavodoxin, conserved site YPDSF_0624 IPR010998 Integrase/recombinase, N-terminal YPDSF_0624 IPR023009 Tyrosine recombinase XerC/XerD YPDSF_0624 IPR004107 Integrase, SAM-like, N-terminal YPDSF_0624 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPDSF_0624 IPR002104 Integrase, catalytic domain YPDSF_0624 IPR013762 Integrase-like, catalytic domain superfamily YPDSF_0624 IPR011932 Tyrosine recombinase XerD YPDSF_0625 IPR013766 Thioredoxin domain YPDSF_0625 IPR017937 Thioredoxin, conserved site YPDSF_0625 IPR036249 Thioredoxin-like superfamily YPDSF_0625 IPR012336 Thioredoxin-like fold YPDSF_0625 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily YPDSF_0625 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal YPDSF_0625 IPR033954 Disulphide bond isomerase, DsbC/G YPDSF_0626 IPR041122 RecJ, OB domain YPDSF_0626 IPR004610 Bacterial RecJ exonuclease YPDSF_0626 IPR003156 DHHA1 domain YPDSF_0626 IPR001667 DDH domain YPDSF_0626 IPR038763 DHH phosphoesterase superfamily YPDSF_0627 IPR005139 Peptide chain release factor YPDSF_0627 IPR000352 Peptide chain release factor class I YPDSF_0627 IPR004374 Peptide chain release factor 2 YPDSF_0628 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YPDSF_0628 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YPDSF_0628 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal YPDSF_0628 IPR002313 Lysine-tRNA ligase, class II YPDSF_0628 IPR006195 Aminoacyl-tRNA synthetase, class II YPDSF_0628 IPR012340 Nucleic acid-binding, OB-fold YPDSF_0628 IPR034762 Bacterial/eukaryotic lysine-tRNA ligase, class II YPDSF_0629 IPR038488 Integrase, DNA-binding domain superfamily YPDSF_0629 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPDSF_0629 IPR013762 Integrase-like, catalytic domain superfamily YPDSF_0629 IPR002104 Integrase, catalytic domain YPDSF_0629 IPR004107 Integrase, SAM-like, N-terminal YPDSF_0629 IPR010998 Integrase/recombinase, N-terminal YPDSF_0629 IPR025166 Integrase, DNA-binding domain YPDSF_0633 IPR038493 Toxin MqsR superfamily YPDSF_0633 IPR031451 mRNA interferase toxin MqsR YPDSF_0634 IPR001387 Cro/C1-type helix-turn-helix domain YPDSF_0634 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPDSF_0634 IPR032758 Antitoxin MqsA/HigA-2 YPDSF_0634 IPR022452 Antitoxin MqsA YPDSF_0634 IPR022453 Zinc finger, MqsA-type YPDSF_0649 IPR005149 Transcription regulator PadR, N-terminal YPDSF_0649 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_0649 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0650 IPR024453 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family YPDSF_0650 IPR038765 Papain-like cysteine peptidase superfamily YPDSF_0652 IPR025997 Periplasmic binding protein YPDSF_0652 IPR028082 Periplasmic binding protein-like I YPDSF_0653 IPR001851 ABC transporter, permease YPDSF_0654 IPR003439 ABC transporter-like YPDSF_0654 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0654 IPR003593 AAA+ ATPase domain YPDSF_0654 IPR017871 ABC transporter, conserved site YPDSF_0654 IPR015861 ABC transporter, ribose import, RbsA YPDSF_0655 IPR008995 Molybdate/tungstate binding, C-terminal YPDSF_0655 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0655 IPR017871 ABC transporter, conserved site YPDSF_0655 IPR003593 AAA+ ATPase domain YPDSF_0655 IPR040582 MalK, OB fold domain YPDSF_0655 IPR003439 ABC transporter-like YPDSF_0656 IPR006059 Bacterial extracellular solute-binding protein YPDSF_0656 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein YPDSF_0658 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_0658 IPR035906 MetI-like superfamily YPDSF_0659 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_0659 IPR035906 MetI-like superfamily YPDSF_0660 IPR011683 Glycosyl hydrolase family 53 YPDSF_0660 IPR017853 Glycoside hydrolase superfamily YPDSF_0664 IPR023738 Maltoporin YPDSF_0664 IPR003192 Porin, LamB-type YPDSF_0664 IPR036998 Porin, LamB-type superfamily YPDSF_0665 IPR000843 LacI-type HTH domain YPDSF_0665 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPDSF_0665 IPR028082 Periplasmic binding protein-like I YPDSF_0666 IPR030459 Glycosyl hydrolases family 31, conserved site YPDSF_0666 IPR013780 Glycosyl hydrolase, all-beta YPDSF_0666 IPR032513 Alpha-glucosidase, domain of unknown function DUF4968 YPDSF_0666 IPR033403 Domain of unknown function DUF5110 YPDSF_0666 IPR011013 Galactose mutarotase-like domain superfamily YPDSF_0666 IPR017853 Glycoside hydrolase superfamily YPDSF_0666 IPR030458 Glycosyl hydrolases family 31, active site YPDSF_0666 IPR025887 Glycoside hydrolase family 31, N-terminal domain YPDSF_0666 IPR000322 Glycoside hydrolase family 31 YPDSF_0667 IPR020846 Major facilitator superfamily domain YPDSF_0667 IPR011701 Major facilitator superfamily YPDSF_0667 IPR036259 MFS transporter superfamily YPDSF_0668 IPR028082 Periplasmic binding protein-like I YPDSF_0668 IPR023588 Transcription regulator HTH, PurR YPDSF_0668 IPR000843 LacI-type HTH domain YPDSF_0668 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPDSF_0670 IPR023955 D-tagatose-bisphosphate aldolase, class II, subunit GatY YPDSF_0670 IPR013785 Aldolase-type TIM barrel YPDSF_0670 IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY YPDSF_0670 IPR000771 Fructose-bisphosphate aldolase, class-II YPDSF_0672 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPDSF_0672 IPR024607 Sulfatase, conserved site YPDSF_0672 IPR000917 Sulfatase, N-terminal YPDSF_0673 IPR023885 4Fe4S-binding SPASM domain YPDSF_0673 IPR013785 Aldolase-type TIM barrel YPDSF_0673 IPR034491 Anaerobic Ser-type sulfatase-maturating enzyme YPDSF_0673 IPR007197 Radical SAM YPDSF_0675 IPR002347 Short-chain dehydrogenase/reductase SDR YPDSF_0675 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPDSF_0675 IPR036291 NAD(P)-binding domain superfamily YPDSF_0675 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase YPDSF_0676 IPR006680 Amidohydrolase-related YPDSF_0676 IPR032466 Metal-dependent hydrolase YPDSF_0676 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPDSF_0676 IPR003764 N-acetylglucosamine-6-phosphate deacetylase YPDSF_0677 IPR004701 Phosphotransferase system, mannose-type IIA component YPDSF_0677 IPR033887 PTS system mannose/sorbose specific IIA subunit YPDSF_0677 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily YPDSF_0678 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component YPDSF_0679 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit YPDSF_0680 IPR004720 Phosphotransferase system, sorbose subfamily IIB component YPDSF_0680 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily YPDSF_0680 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup YPDSF_0681 IPR035464 AgaS, SIS domain YPDSF_0681 IPR014180 Sugar isomerase, AgaS YPDSF_0681 IPR035466 GlmS/AgaS, SIS domain 1 YPDSF_0681 IPR001347 Sugar isomerase (SIS) YPDSF_0682 IPR023435 D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit KbaZ YPDSF_0682 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ-like YPDSF_0682 IPR013785 Aldolase-type TIM barrel YPDSF_0683 IPR037171 NagB/RpiA transferase-like YPDSF_0683 IPR001034 DeoR-type HTH domain YPDSF_0683 IPR014036 DeoR C-terminal sensor domain YPDSF_0683 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_0683 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0683 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPDSF_0684 IPR000917 Sulfatase, N-terminal YPDSF_0684 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPDSF_0685 IPR002686 Transposase IS200-like YPDSF_0685 IPR036515 Transposase IS200-like superfamily YPDSF_0686 IPR017894 HTH domain, IS21 transposase-type YPDSF_0686 IPR036397 Ribonuclease H superfamily YPDSF_0686 IPR012337 Ribonuclease H-like superfamily YPDSF_0686 IPR006120 Resolvase, HTH domain YPDSF_0686 IPR001584 Integrase, catalytic core YPDSF_0687 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0687 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_0687 IPR002611 IstB-like ATP-binding protein YPDSF_0687 IPR001270 ClpA/B family YPDSF_0687 IPR003593 AAA+ ATPase domain YPDSF_0688 IPR039174 Chondroitin sulfate ABC lyase YPDSF_0688 IPR024200 Chondroitin sulfate ABC endolyase YPDSF_0688 IPR008929 Chondroitin AC/alginate lyase YPDSF_0688 IPR014718 Glycoside hydrolase-type carbohydrate-binding YPDSF_0688 IPR011071 Polysaccharide lyase family 8-like, C-terminal YPDSF_0688 IPR004103 Polysaccharide lyase family 8, C-terminal YPDSF_0688 IPR003159 Polysaccharide lyase family 8, central domain YPDSF_0688 IPR015177 Lyase, catalytic YPDSF_0688 IPR015176 Lyase, N-terminal YPDSF_0688 IPR011013 Galactose mutarotase-like domain superfamily YPDSF_0688 IPR008979 Galactose-binding-like domain superfamily YPDSF_0692 IPR036874 Carbonic anhydrase superfamily YPDSF_0692 IPR001765 Carbonic anhydrase YPDSF_0692 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site YPDSF_0694 IPR013356 Type II secretion system GspD YPDSF_0694 IPR005644 NolW-like YPDSF_0694 IPR004846 Type II/III secretion system YPDSF_0694 IPR038591 NolW-like superfamily YPDSF_0694 IPR001775 GspD/PilQ family YPDSF_0694 IPR004845 Type II secretion system GspD, conserved site YPDSF_0696 IPR018076 Type II secretion system F domain YPDSF_0696 IPR001992 Type II secretion system conserved site YPDSF_0696 IPR011850 General secretion pathway protein F YPDSF_0696 IPR003004 GspF/PilC family YPDSF_0696 IPR042094 Type II secretion system F domain superfamily YPDSF_0697 IPR013545 Type II secretion system protein G YPDSF_0697 IPR000983 Bacterial general secretion pathway protein G-type pilin YPDSF_0697 IPR012902 Prokaryotic N-terminal methylation site YPDSF_0697 IPR010054 General secretion pathway protein G YPDSF_0703 IPR000045 Prepilin type IV endopeptidase, peptidase domain YPDSF_0703 IPR010627 Peptidase A24A, N-terminal YPDSF_0703 IPR014032 Peptidase A24A, prepilin type IV, bacterial YPDSF_0705 IPR001207 Transposase, mutator type YPDSF_0706 IPR006439 HAD hydrolase, subfamily IA YPDSF_0706 IPR041492 Haloacid dehalogenase-like hydrolase YPDSF_0706 IPR023214 HAD superfamily YPDSF_0706 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPDSF_0706 IPR036412 HAD-like superfamily YPDSF_0707 IPR025229 YniB-like protein YPDSF_0710 IPR001626 ABC transporter, TroCD-like YPDSF_0710 IPR037294 ABC transporter, BtuC-like YPDSF_0711 IPR037294 ABC transporter, BtuC-like YPDSF_0711 IPR001626 ABC transporter, TroCD-like YPDSF_0712 IPR003593 AAA+ ATPase domain YPDSF_0712 IPR017871 ABC transporter, conserved site YPDSF_0712 IPR003439 ABC transporter-like YPDSF_0712 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0713 IPR006128 Adhesion lipoprotein YPDSF_0713 IPR006129 Adhesin B YPDSF_0713 IPR006127 Periplasmic solute binding protein, ZnuA-like YPDSF_0714 IPR008258 Transglycosylase SLT domain 1 YPDSF_0714 IPR023946 Endo-type membrane-bound lytic murein transglycosylase A YPDSF_0714 IPR023346 Lysozyme-like domain superfamily YPDSF_0714 IPR000189 Prokaryotic transglycosylase, active site YPDSF_0715 IPR002771 Multiple antibiotic resistance (MarC)-related YPDSF_0716 IPR025309 KTSC domain YPDSF_0717 IPR002320 Threonine-tRNA ligase, class IIa YPDSF_0717 IPR012947 Threonyl/alanyl tRNA synthetase, SAD YPDSF_0717 IPR033728 Threonine-tRNA ligase catalytic core domain YPDSF_0717 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) YPDSF_0717 IPR006195 Aminoacyl-tRNA synthetase, class II YPDSF_0717 IPR004154 Anticodon-binding YPDSF_0717 IPR036621 Anticodon-binding domain superfamily YPDSF_0717 IPR012675 Beta-grasp domain superfamily YPDSF_0717 IPR004095 TGS YPDSF_0717 IPR012676 TGS-like YPDSF_0717 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily YPDSF_0718 IPR019813 Translation initiation factor 3, conserved site YPDSF_0718 IPR019814 Translation initiation factor 3, N-terminal YPDSF_0718 IPR019815 Translation initiation factor 3, C-terminal YPDSF_0718 IPR001288 Translation initiation factor 3 YPDSF_0718 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily YPDSF_0718 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily YPDSF_0719 IPR037229 Ribosomal protein L35 superfamily YPDSF_0719 IPR001706 Ribosomal protein L35, non-mitochondrial YPDSF_0719 IPR018265 Ribosomal protein L35, conserved site YPDSF_0719 IPR021137 Ribosomal protein L35 YPDSF_0720 IPR005813 Ribosomal protein L20 YPDSF_0720 IPR035566 Ribosomal protein L20, C-terminal YPDSF_0721 IPR002319 Phenylalanyl-tRNA synthetase YPDSF_0721 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial YPDSF_0721 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal YPDSF_0721 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit YPDSF_0721 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm YPDSF_0721 IPR006195 Aminoacyl-tRNA synthetase, class II YPDSF_0722 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 YPDSF_0722 IPR009061 Putative DNA-binding domain superfamily YPDSF_0722 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit YPDSF_0722 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily YPDSF_0722 IPR005121 Ferrodoxin-fold anticodon-binding domain YPDSF_0722 IPR012340 Nucleic acid-binding, OB-fold YPDSF_0722 IPR002547 tRNA-binding domain YPDSF_0722 IPR005146 B3/B4 tRNA-binding domain YPDSF_0722 IPR005147 tRNA synthetase, B5-domain YPDSF_0722 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain YPDSF_0722 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain YPDSF_0723 IPR005684 Integration host factor, alpha subunit YPDSF_0723 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily YPDSF_0723 IPR020816 Histone-like DNA-binding protein, conserved site YPDSF_0723 IPR000119 Histone-like DNA-binding protein YPDSF_0725 IPR023691 ABC transporter, vitamin B12 import, permease protein BtuC YPDSF_0725 IPR037294 ABC transporter, BtuC-like YPDSF_0725 IPR000522 ABC transporter, permease protein, BtuC-like YPDSF_0726 IPR033674 Thioredoxin/glutathione peroxidase BtuE YPDSF_0726 IPR000889 Glutathione peroxidase YPDSF_0726 IPR029759 Glutathione peroxidase active site YPDSF_0726 IPR029760 Glutathione peroxidase conserved site YPDSF_0726 IPR036249 Thioredoxin-like superfamily YPDSF_0727 IPR003439 ABC transporter-like YPDSF_0727 IPR017871 ABC transporter, conserved site YPDSF_0727 IPR003593 AAA+ ATPase domain YPDSF_0727 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0727 IPR023693 ABC transporter, vitamin B12, BtuD YPDSF_0728 IPR022850 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, ArnB YPDSF_0728 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YPDSF_0728 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_0728 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_0728 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_0729 IPR022857 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase YPDSF_0729 IPR001173 Glycosyltransferase 2-like YPDSF_0729 IPR029044 Nucleotide-diphospho-sugar transferases YPDSF_0730 IPR021168 Bifunctional polymyxin resistance protein, ArnA YPDSF_0730 IPR001509 NAD-dependent epimerase/dehydratase YPDSF_0730 IPR005793 Formyl transferase, C-terminal YPDSF_0730 IPR002376 Formyl transferase, N-terminal YPDSF_0730 IPR036477 Formyl transferase, N-terminal domain superfamily YPDSF_0730 IPR011034 Formyl transferase-like, C-terminal domain superfamily YPDSF_0730 IPR036291 NAD(P)-binding domain superfamily YPDSF_0731 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPDSF_0731 IPR023557 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD, probable YPDSF_0731 IPR002509 NodB homology domain YPDSF_0732 IPR022839 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase YPDSF_0732 IPR003342 Glycosyl transferase family 39/83 YPDSF_0733 IPR000620 EamA domain YPDSF_0733 IPR000390 Small multidrug resistance protein family YPDSF_0733 IPR022883 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase, subunit ArnE YPDSF_0734 IPR000390 Small multidrug resistance protein family YPDSF_0734 IPR022832 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF YPDSF_0735 IPR038765 Papain-like cysteine peptidase superfamily YPDSF_0735 IPR000064 Endopeptidase, NLPC/P60 domain YPDSF_0736 IPR004562 Lipoyltransferase/lipoate-protein ligase YPDSF_0736 IPR019491 Lipoate protein ligase, C-terminal YPDSF_0736 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain YPDSF_0736 IPR023741 Lipoate-protein ligase A YPDSF_0737 IPR003846 Protein adenylyltransferase SelO YPDSF_0738 IPR006219 DHAP synthase, class 1 YPDSF_0738 IPR006218 DAHP synthetase I/KDSA YPDSF_0738 IPR013785 Aldolase-type TIM barrel YPDSF_0739 IPR026530 Phosphoenolpyruvate synthase regulatory protein YPDSF_0739 IPR005177 Bifunctional kinase-pyrophosphorylase YPDSF_0739 IPR008917 Transcription factor, Skn-1-like, DNA-binding domain superfamily YPDSF_0740 IPR040442 Pyruvate kinase-like domain superfamily YPDSF_0740 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPDSF_0740 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding YPDSF_0740 IPR036637 Phosphohistidine domain superfamily YPDSF_0740 IPR023151 PEP-utilising enzyme, conserved site YPDSF_0740 IPR018274 PEP-utilising enzyme, active site YPDSF_0740 IPR006319 Phosphoenolpyruvate synthase YPDSF_0740 IPR000121 PEP-utilising enzyme, C-terminal YPDSF_0740 IPR013815 ATP-grasp fold, subdomain 1 YPDSF_0740 IPR008279 PEP-utilising enzyme, mobile domain YPDSF_0741 IPR002549 Transmembrane protein TqsA-like YPDSF_0742 IPR009051 Alpha-helical ferredoxin YPDSF_0742 IPR006094 FAD linked oxidase, N-terminal YPDSF_0742 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPDSF_0742 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPDSF_0742 IPR016166 FAD-binding domain, PCMH-type YPDSF_0742 IPR036318 FAD-binding, type PCMH-like superfamily YPDSF_0742 IPR016164 FAD-linked oxidase-like, C-terminal YPDSF_0742 IPR004113 FAD-linked oxidase, C-terminal YPDSF_0743 IPR006683 Thioesterase domain YPDSF_0743 IPR030863 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, MenI YPDSF_0743 IPR003736 Phenylacetic acid degradation-related domain YPDSF_0743 IPR029069 HotDog domain superfamily YPDSF_0744 IPR017870 FeS cluster insertion, C-terminal, conserved site YPDSF_0744 IPR035903 HesB-like domain superfamily YPDSF_0744 IPR016092 FeS cluster insertion protein YPDSF_0744 IPR011298 FeS assembly scaffold SufA YPDSF_0744 IPR000361 FeS cluster biogenesis YPDSF_0745 IPR037284 SUF system FeS cluster assembly, SufBD superfamily YPDSF_0745 IPR000825 SUF system FeS cluster assembly, SufBD YPDSF_0745 IPR010231 SUF system FeS cluster assembly, SufB YPDSF_0746 IPR010230 FeS cluster assembly SUF system, ATPase SufC YPDSF_0746 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0746 IPR017871 ABC transporter, conserved site YPDSF_0746 IPR003439 ABC transporter-like YPDSF_0746 IPR003593 AAA+ ATPase domain YPDSF_0747 IPR037284 SUF system FeS cluster assembly, SufBD superfamily YPDSF_0747 IPR011542 SUF system FeS cluster assembly, SufD YPDSF_0747 IPR000825 SUF system FeS cluster assembly, SufBD YPDSF_0748 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPDSF_0748 IPR010970 Cysteine desulfurase, SufS YPDSF_0748 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_0748 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_0748 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_0748 IPR000192 Aminotransferase class V domain YPDSF_0749 IPR023939 Cysteine desulfuration protein SufE YPDSF_0749 IPR003808 Fe-S metabolism associated domain, SufE-like YPDSF_0750 IPR005490 L,D-transpeptidase catalytic domain YPDSF_0750 IPR038063 L,D-transpeptidase catalytic domain-like YPDSF_0750 IPR018392 LysM domain YPDSF_0750 IPR041597 L,D-transpeptidase C-terminal domain YPDSF_0751 IPR001270 ClpA/B family YPDSF_0751 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_0751 IPR003593 AAA+ ATPase domain YPDSF_0751 IPR002611 IstB-like ATP-binding protein YPDSF_0751 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0752 IPR036397 Ribonuclease H superfamily YPDSF_0752 IPR012337 Ribonuclease H-like superfamily YPDSF_0752 IPR006120 Resolvase, HTH domain YPDSF_0752 IPR017894 HTH domain, IS21 transposase-type YPDSF_0752 IPR001584 Integrase, catalytic core YPDSF_0754 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPDSF_0754 IPR001697 Pyruvate kinase YPDSF_0754 IPR040442 Pyruvate kinase-like domain superfamily YPDSF_0754 IPR036918 Pyruvate kinase, C-terminal domain superfamily YPDSF_0754 IPR018209 Pyruvate kinase, active site YPDSF_0754 IPR015793 Pyruvate kinase, barrel YPDSF_0754 IPR015795 Pyruvate kinase, C-terminal YPDSF_0754 IPR015806 Pyruvate kinase, insert domain superfamily YPDSF_0754 IPR011037 Pyruvate kinase-like, insert domain superfamily YPDSF_0755 IPR022913 Multidrug resistance protein MdtK YPDSF_0755 IPR002528 Multi antimicrobial extrusion protein YPDSF_0756 IPR001783 Lumazine-binding protein YPDSF_0756 IPR017938 Riboflavin synthase-like beta-barrel YPDSF_0756 IPR026017 Lumazine-binding domain YPDSF_0756 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily YPDSF_0757 IPR003333 Mycolic acid cyclopropane synthase YPDSF_0757 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_0758 IPR020846 Major facilitator superfamily domain YPDSF_0758 IPR036259 MFS transporter superfamily YPDSF_0758 IPR011701 Major facilitator superfamily YPDSF_0758 IPR004812 Drug resistance transporter Bcr/CmlA subfamily YPDSF_0759 IPR000847 Transcription regulator HTH, LysR YPDSF_0759 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_0759 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0759 IPR005119 LysR, substrate-binding YPDSF_0760 IPR023588 Transcription regulator HTH, PurR YPDSF_0760 IPR000843 LacI-type HTH domain YPDSF_0760 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPDSF_0760 IPR028082 Periplasmic binding protein-like I YPDSF_0761 IPR001189 Manganese/iron superoxide dismutase YPDSF_0761 IPR019833 Manganese/iron superoxide dismutase, binding site YPDSF_0761 IPR019832 Manganese/iron superoxide dismutase, C-terminal YPDSF_0761 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily YPDSF_0761 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily YPDSF_0761 IPR019831 Manganese/iron superoxide dismutase, N-terminal YPDSF_0762 IPR000064 Endopeptidase, NLPC/P60 domain YPDSF_0762 IPR038765 Papain-like cysteine peptidase superfamily YPDSF_0763 IPR036249 Thioredoxin-like superfamily YPDSF_0763 IPR004480 Monothiol glutaredoxin-related YPDSF_0763 IPR014434 Monothiol glutaredoxin YPDSF_0763 IPR033658 Glutaredoxin, PICOT-like YPDSF_0763 IPR002109 Glutaredoxin YPDSF_0764 IPR005987 Ribonuclease T YPDSF_0764 IPR036397 Ribonuclease H superfamily YPDSF_0764 IPR013520 Exonuclease, RNase T/DNA polymerase III YPDSF_0764 IPR012337 Ribonuclease H-like superfamily YPDSF_0765 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain YPDSF_0765 IPR004361 Glyoxalase I YPDSF_0765 IPR018146 Glyoxalase I, conserved site YPDSF_0765 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YPDSF_0765 IPR037523 Vicinal oxygen chelate (VOC) domain YPDSF_0766 IPR022385 Rhs repeat-associated core YPDSF_0766 IPR025968 YwqJ-like deaminase YPDSF_0766 IPR041508 Toxin complex C-like repeat YPDSF_0767 IPR013785 Aldolase-type TIM barrel YPDSF_0767 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal YPDSF_0768 IPR011075 Tetracyclin repressor-like, C-terminal domain YPDSF_0768 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPDSF_0768 IPR001647 DNA-binding HTH domain, TetR-type YPDSF_0768 IPR009057 Homeobox-like domain superfamily YPDSF_0769 IPR012549 Phosphoethanolamine transferase, N-terminal YPDSF_0769 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPDSF_0769 IPR040423 Phosphoethanolamine transferase YPDSF_0769 IPR000917 Sulfatase, N-terminal YPDSF_0770 IPR010710 Protein of unknown function DUF1289 YPDSF_0771 IPR020471 Aldo/keto reductase YPDSF_0771 IPR023210 NADP-dependent oxidoreductase domain YPDSF_0771 IPR036812 NADP-dependent oxidoreductase domain superfamily YPDSF_0772 IPR023187 Transcriptional regulator MarR-type, conserved site YPDSF_0772 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0772 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_0772 IPR000835 MarR-type HTH domain YPDSF_0772 IPR023071 Transcriptional regulator, SlyA YPDSF_0773 IPR008816 Glycine zipper 2TM domain YPDSF_0774 IPR005338 Anhydro-N-acetylmuramic acid kinase YPDSF_0775 IPR036328 C-type lysozyme inhibitor superfamily YPDSF_0775 IPR018660 C-type lysozyme inhibitor YPDSF_0776 IPR012349 FMN-binding split barrel YPDSF_0776 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal YPDSF_0776 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site YPDSF_0776 IPR000659 Pyridoxamine 5'-phosphate oxidase YPDSF_0776 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative YPDSF_0777 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 YPDSF_0777 IPR024088 Tyrosine-tRNA ligase, bacterial-type YPDSF_0777 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPDSF_0777 IPR002305 Aminoacyl-tRNA synthetase, class Ic YPDSF_0777 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_0777 IPR002307 Tyrosine-tRNA ligase YPDSF_0777 IPR036986 RNA-binding S4 domain superfamily YPDSF_0777 IPR002942 RNA-binding S4 domain YPDSF_0778 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase YPDSF_0778 IPR004625 Pyridoxine kinase YPDSF_0778 IPR023685 Pyridoxal kinase PdxY YPDSF_0778 IPR029056 Ribokinase-like YPDSF_0779 IPR040079 Glutathione Transferase family YPDSF_0779 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YPDSF_0779 IPR004045 Glutathione S-transferase, N-terminal YPDSF_0779 IPR004046 Glutathione S-transferase, C-terminal YPDSF_0779 IPR036249 Thioredoxin-like superfamily YPDSF_0779 IPR010987 Glutathione S-transferase, C-terminal-like YPDSF_0780 IPR020317 Uncharacterised protein family YjbD YPDSF_0781 IPR006977 Yip1 domain YPDSF_0782 IPR005279 Dipeptide/tripeptide permease YPDSF_0782 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site YPDSF_0782 IPR000109 Proton-dependent oligopeptide transporter family YPDSF_0782 IPR036259 MFS transporter superfamily YPDSF_0782 IPR023517 Amino acid/peptide transporter family, dipeptide and tripeptide permease A YPDSF_0783 IPR029032 AhpD-like YPDSF_0784 IPR003439 ABC transporter-like YPDSF_0784 IPR017871 ABC transporter, conserved site YPDSF_0784 IPR003593 AAA+ ATPase domain YPDSF_0784 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0785 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0785 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPDSF_0785 IPR003439 ABC transporter-like YPDSF_0785 IPR003593 AAA+ ATPase domain YPDSF_0786 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_0786 IPR035906 MetI-like superfamily YPDSF_0786 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPDSF_0787 IPR035906 MetI-like superfamily YPDSF_0787 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_0788 IPR000914 Solute-binding protein family 5 domain YPDSF_0788 IPR030678 Peptide/nickel binding protein, MppA-type YPDSF_0788 IPR039424 Solute-binding protein family 5 YPDSF_0788 IPR023765 Solute-binding protein family 5, conserved site YPDSF_0790 IPR002078 RNA polymerase sigma factor 54 interaction domain YPDSF_0790 IPR002197 DNA binding HTH domain, Fis-type YPDSF_0790 IPR009057 Homeobox-like domain superfamily YPDSF_0790 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPDSF_0790 IPR025944 Sigma-54 interaction domain, conserved site YPDSF_0790 IPR014317 Transcription activator PspF YPDSF_0790 IPR003593 AAA+ ATPase domain YPDSF_0790 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0791 IPR014319 Phage shock protein, PspA YPDSF_0791 IPR007157 PspA/IM30 YPDSF_0792 IPR009554 Phage shock protein B YPDSF_0793 IPR007168 Phage shock protein, PspC, N-terminal YPDSF_0793 IPR014320 Phage shock protein, PspC YPDSF_0795 IPR007413 Protein of unknown function DUF463, YcjX-like protein YPDSF_0796 IPR006507 Uncharacterised protein family UPF0283 YPDSF_0796 IPR021147 Protein of unknown function DUF697 YPDSF_0799 IPR000014 PAS domain YPDSF_0799 IPR002078 RNA polymerase sigma factor 54 interaction domain YPDSF_0799 IPR030828 TyrR family, helix-turn-helix domain YPDSF_0799 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPDSF_0799 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPDSF_0799 IPR009057 Homeobox-like domain superfamily YPDSF_0799 IPR002912 ACT domain YPDSF_0799 IPR025944 Sigma-54 interaction domain, conserved site YPDSF_0799 IPR035965 PAS domain superfamily YPDSF_0799 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0799 IPR003593 AAA+ ATPase domain YPDSF_0801 IPR002611 IstB-like ATP-binding protein YPDSF_0801 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_0801 IPR001270 ClpA/B family YPDSF_0801 IPR003593 AAA+ ATPase domain YPDSF_0801 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0802 IPR006120 Resolvase, HTH domain YPDSF_0802 IPR036397 Ribonuclease H superfamily YPDSF_0802 IPR012337 Ribonuclease H-like superfamily YPDSF_0802 IPR017894 HTH domain, IS21 transposase-type YPDSF_0802 IPR001584 Integrase, catalytic core YPDSF_0803 IPR013766 Thioredoxin domain YPDSF_0803 IPR002065 Thiol peroxidase Tpx YPDSF_0803 IPR013740 Redoxin YPDSF_0803 IPR036249 Thioredoxin-like superfamily YPDSF_0803 IPR018219 Thiol peroxidase conserved site YPDSF_0804 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site YPDSF_0804 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal YPDSF_0804 IPR029065 Enolase C-terminal domain-like YPDSF_0804 IPR029017 Enolase-like, N-terminal YPDSF_0804 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain YPDSF_0804 IPR034603 Dipeptide epimerase YPDSF_0804 IPR036849 Enolase-like, C-terminal domain superfamily YPDSF_0805 IPR000834 Peptidase M14, carboxypeptidase A YPDSF_0806 IPR023765 Solute-binding protein family 5, conserved site YPDSF_0806 IPR000914 Solute-binding protein family 5 domain YPDSF_0806 IPR039424 Solute-binding protein family 5 YPDSF_0806 IPR030678 Peptide/nickel binding protein, MppA-type YPDSF_0807 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB YPDSF_0807 IPR023714 Zinc transport protein ZntB YPDSF_0810 IPR036514 SGNH hydrolase superfamily YPDSF_0810 IPR013830 SGNH hydrolase-type esterase domain YPDSF_0810 IPR029058 Alpha/Beta hydrolase fold YPDSF_0810 IPR013094 Alpha/beta hydrolase fold-3 YPDSF_0811 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase YPDSF_0811 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type YPDSF_0811 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_0811 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal YPDSF_0812 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II YPDSF_0812 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPDSF_0812 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPDSF_0812 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPDSF_0812 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II YPDSF_0812 IPR037112 Pyruvate-flavodoxin oxidoreductase, EKR domain superfamily YPDSF_0812 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain YPDSF_0812 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal YPDSF_0812 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain YPDSF_0812 IPR011895 Pyruvate-flavodoxin oxidoreductase YPDSF_0812 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain YPDSF_0812 IPR029061 Thiamin diphosphate-binding fold YPDSF_0813 IPR000390 Small multidrug resistance protein family YPDSF_0814 IPR003416 MgtC/SapB/SrpB/YhiD family YPDSF_0815 IPR005590 Protein of unknown function DUF333 YPDSF_0816 IPR038670 HslJ-like superfamily YPDSF_0816 IPR005184 Domain of unknown function DUF306, Meta/HslJ YPDSF_0817 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPDSF_0817 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPDSF_0817 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPDSF_0817 IPR036291 NAD(P)-binding domain superfamily YPDSF_0817 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPDSF_0818 IPR021730 Dicarboxylate transport YPDSF_0819 IPR025985 YnbE-like lipoprotein YPDSF_0820 IPR008309 Uncharacterised conserved protein UCP025560 YPDSF_0821 IPR013118 Mannitol dehydrogenase, C-terminal YPDSF_0821 IPR036291 NAD(P)-binding domain superfamily YPDSF_0821 IPR013131 Mannitol dehydrogenase, N-terminal YPDSF_0821 IPR000669 Mannitol dehydrogenase YPDSF_0821 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPDSF_0821 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPDSF_0822 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0822 IPR007324 Sugar-binding domain, putative YPDSF_0822 IPR037171 NagB/RpiA transferase-like YPDSF_0822 IPR012318 Crp-type HTH domain YPDSF_0823 IPR003680 Flavodoxin-like fold YPDSF_0823 IPR029039 Flavoprotein-like superfamily YPDSF_0823 IPR023048 NADH-azoreductase, FMN-dependent YPDSF_0824 IPR011709 Domain of unknown function DUF1605 YPDSF_0824 IPR010222 RNA helicase HrpA YPDSF_0824 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0824 IPR024590 RNA helicase HrpA, C-terminal YPDSF_0824 IPR007502 Helicase-associated domain YPDSF_0824 IPR001650 Helicase, C-terminal YPDSF_0824 IPR003593 AAA+ ATPase domain YPDSF_0824 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPDSF_0824 IPR011545 DEAD/DEAH box helicase domain YPDSF_0826 IPR018114 Serine proteases, trypsin family, histidine active site YPDSF_0826 IPR009003 Peptidase S1, PA clan YPDSF_0826 IPR033116 Serine proteases, trypsin family, serine active site YPDSF_0826 IPR001254 Serine proteases, trypsin domain YPDSF_0826 IPR008256 Peptidase S1B YPDSF_0828 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase YPDSF_0828 IPR016174 Di-haem cytochrome, transmembrane YPDSF_0829 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily YPDSF_0829 IPR007372 Lipid/polyisoprenoid-binding, YceI-like YPDSF_0829 IPR023480 Uncharacterised protein family UPF0312/YceI YPDSF_0832 IPR025968 YwqJ-like deaminase YPDSF_0832 IPR041508 Toxin complex C-like repeat YPDSF_0832 IPR022385 Rhs repeat-associated core YPDSF_0834 IPR001333 Peptidase M32, carboxypeptidase Taq YPDSF_0835 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPDSF_0835 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPDSF_0835 IPR005467 Histidine kinase domain YPDSF_0835 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_0835 IPR003594 Histidine kinase/HSP90-like ATPase YPDSF_0835 IPR003660 HAMP domain YPDSF_0835 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPDSF_0836 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0836 IPR039420 Transcriptional regulatory protein WalR-like YPDSF_0836 IPR001867 OmpR/PhoB-type DNA-binding domain YPDSF_0836 IPR001789 Signal transduction response regulator, receiver domain YPDSF_0836 IPR011006 CheY-like superfamily YPDSF_0836 IPR016032 Signal transduction response regulator, C-terminal effector YPDSF_0838 IPR002293 Amino acid/polyamine transporter I YPDSF_0838 IPR004754 Amino acid antiporter YPDSF_0839 IPR036275 YdgH-like superfamily YPDSF_0839 IPR025539 YdgH protein YPDSF_0839 IPR010854 Domain of unknown function DUF1471 YPDSF_0839 IPR025543 Dodecin-like YPDSF_0840 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal YPDSF_0840 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 YPDSF_0840 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 YPDSF_0840 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain YPDSF_0840 IPR036291 NAD(P)-binding domain superfamily YPDSF_0840 IPR026255 NAD(P) transhydrogenase, alpha subunit YPDSF_0840 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal YPDSF_0841 IPR012136 NADP transhydrogenase, beta subunit YPDSF_0841 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPDSF_0841 IPR034300 NADP transhydrogenase beta-like domain YPDSF_0842 IPR006016 UspA YPDSF_0843 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_0843 IPR014710 RmlC-like jelly roll fold YPDSF_0843 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0843 IPR000595 Cyclic nucleotide-binding domain YPDSF_0843 IPR018490 Cyclic nucleotide-binding-like YPDSF_0843 IPR012318 Crp-type HTH domain YPDSF_0843 IPR018335 Transcription regulator HTH, Crp-type, conserved site YPDSF_0844 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain YPDSF_0844 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YPDSF_0844 IPR023546 Methylated-DNA--protein-cysteine methyltransferase YPDSF_0844 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily YPDSF_0844 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0844 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain YPDSF_0844 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site YPDSF_0845 IPR018299 Alkaline phosphatase, active site YPDSF_0845 IPR001952 Alkaline phosphatase YPDSF_0845 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPDSF_0847 IPR036412 HAD-like superfamily YPDSF_0847 IPR006439 HAD hydrolase, subfamily IA YPDSF_0847 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPDSF_0847 IPR023214 HAD superfamily YPDSF_0847 IPR041492 Haloacid dehalogenase-like hydrolase YPDSF_0847 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB YPDSF_0848 IPR002912 ACT domain YPDSF_0848 IPR004789 Acetolactate synthase, small subunit YPDSF_0848 IPR039557 AHAS, ACT domain YPDSF_0849 IPR029061 Thiamin diphosphate-binding fold YPDSF_0849 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPDSF_0849 IPR039368 Acetolactate synthase large subunit, TPP binding domain YPDSF_0849 IPR012846 Acetolactate synthase, large subunit, biosynthetic YPDSF_0849 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPDSF_0849 IPR000399 TPP-binding enzyme, conserved site YPDSF_0849 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPDSF_0849 IPR012000 Thiamine pyrophosphate enzyme, central domain YPDSF_0855 IPR035994 Nucleoside phosphorylase superfamily YPDSF_0855 IPR000845 Nucleoside phosphorylase domain YPDSF_0855 IPR018953 AMP nucleoside phosphorylase, N-terminal YPDSF_0855 IPR011271 AMP nucleosidase YPDSF_0855 IPR037109 AMP nucleoside phosphorylase, N-terminal domain superfamily YPDSF_0856 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0856 IPR003593 AAA+ ATPase domain YPDSF_0856 IPR003439 ABC transporter-like YPDSF_0857 IPR035906 MetI-like superfamily YPDSF_0857 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_0858 IPR010067 Aliphatic sulfonates-binding protein YPDSF_0858 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPDSF_0858 IPR015168 SsuA/THI5-like YPDSF_0861 IPR000843 LacI-type HTH domain YPDSF_0861 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPDSF_0861 IPR028082 Periplasmic binding protein-like I YPDSF_0862 IPR010595 Protein of unknown function DUF1161 YPDSF_0863 IPR014743 Chloride channel, core YPDSF_0863 IPR023790 Chloride channel, voltage-gated, ClcB YPDSF_0863 IPR001807 Chloride channel, voltage gated YPDSF_0864 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0864 IPR004472 Dethiobiotin synthase BioD YPDSF_0865 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_0865 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0865 IPR000600 ROK family YPDSF_0866 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_0866 IPR005119 LysR, substrate-binding YPDSF_0866 IPR000847 Transcription regulator HTH, LysR YPDSF_0866 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0867 IPR011701 Major facilitator superfamily YPDSF_0867 IPR020846 Major facilitator superfamily domain YPDSF_0867 IPR036259 MFS transporter superfamily YPDSF_0867 IPR005829 Sugar transporter, conserved site YPDSF_0868 IPR008865 DNA replication terminus site-binding protein YPDSF_0868 IPR036381 Replication terminator Tus, domain 1 YPDSF_0868 IPR036384 Replication terminator Tus superfamily YPDSF_0869 IPR008948 L-Aspartase-like YPDSF_0869 IPR005677 Fumarate hydratase, class II YPDSF_0869 IPR024083 Fumarase/histidase, N-terminal YPDSF_0869 IPR018951 Fumarase C, C-terminal YPDSF_0869 IPR000362 Fumarate lyase family YPDSF_0869 IPR022761 Fumarate lyase, N-terminal YPDSF_0869 IPR020557 Fumarate lyase, conserved site YPDSF_0870 IPR014710 RmlC-like jelly roll fold YPDSF_0870 IPR018050 Phosphomannose isomerase, type I, conserved site YPDSF_0870 IPR011051 RmlC-like cupin domain superfamily YPDSF_0870 IPR001250 Mannose-6-phosphate isomerase, type I YPDSF_0870 IPR016305 Mannose-6-phosphate isomerase YPDSF_0871 IPR010352 Protein of unknown function DUF945 YPDSF_0873 IPR016833 Putative sodium bile acid cotransporter YPDSF_0873 IPR038770 Sodium/solute symporter superfamily YPDSF_0874 IPR004104 Oxidoreductase, C-terminal YPDSF_0874 IPR000683 Oxidoreductase, N-terminal YPDSF_0874 IPR036291 NAD(P)-binding domain superfamily YPDSF_0875 IPR037923 Transcription regulator HTH-like YPDSF_0875 IPR018060 DNA binding HTH domain, AraC-type YPDSF_0875 IPR020449 Transcription regulator HTH, AraC- type YPDSF_0875 IPR009057 Homeobox-like domain superfamily YPDSF_0875 IPR018062 HTH domain AraC-type, conserved site YPDSF_0875 IPR003313 AraC-type arabinose-binding/dimerisation domain YPDSF_0878 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0878 IPR017871 ABC transporter, conserved site YPDSF_0878 IPR017917 ABC transporter, arabinose import, ATP-binding protein, AraG YPDSF_0878 IPR003593 AAA+ ATPase domain YPDSF_0878 IPR003439 ABC transporter-like YPDSF_0879 IPR026266 L-arabinose-binding periplasmic protein YPDSF_0879 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPDSF_0879 IPR028082 Periplasmic binding protein-like I YPDSF_0880 IPR005929 Ribulokinase YPDSF_0880 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPDSF_0881 IPR009015 L-fucose isomerase, N-terminal/central domain superfamily YPDSF_0881 IPR003762 L-arabinose isomerase YPDSF_0881 IPR004216 L-fucose/L-arabinose isomerase, C-terminal YPDSF_0881 IPR038583 L-arabinose isomerase, N-terminal domain superfamily YPDSF_0881 IPR024664 L-arabinose isomerase, C-terminal YPDSF_0882 IPR039421 Type I protein exporter YPDSF_0882 IPR039395 Peptidase C39-like A YPDSF_0882 IPR005074 Peptidase C39, bacteriocin processing YPDSF_0882 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0882 IPR017871 ABC transporter, conserved site YPDSF_0882 IPR010132 ATPase, type I secretion system, HlyB YPDSF_0882 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPDSF_0882 IPR011527 ABC transporter type 1, transmembrane domain YPDSF_0882 IPR003439 ABC transporter-like YPDSF_0882 IPR003593 AAA+ ATPase domain YPDSF_0883 IPR006144 Secretion protein HlyD, conserved site YPDSF_0883 IPR010129 Type I secretion membrane fusion protein, HlyD family YPDSF_0884 IPR006144 Secretion protein HlyD, conserved site YPDSF_0884 IPR010129 Type I secretion membrane fusion protein, HlyD family YPDSF_0884 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YPDSF_0885 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0885 IPR010132 ATPase, type I secretion system, HlyB YPDSF_0885 IPR017871 ABC transporter, conserved site YPDSF_0885 IPR005074 Peptidase C39, bacteriocin processing YPDSF_0885 IPR003439 ABC transporter-like YPDSF_0885 IPR039395 Peptidase C39-like A YPDSF_0885 IPR003593 AAA+ ATPase domain YPDSF_0885 IPR039421 Type I protein exporter YPDSF_0885 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPDSF_0885 IPR011527 ABC transporter type 1, transmembrane domain YPDSF_0886 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0886 IPR039395 Peptidase C39-like A YPDSF_0886 IPR039421 Type I protein exporter YPDSF_0886 IPR003593 AAA+ ATPase domain YPDSF_0886 IPR017871 ABC transporter, conserved site YPDSF_0886 IPR011527 ABC transporter type 1, transmembrane domain YPDSF_0886 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPDSF_0886 IPR003439 ABC transporter-like YPDSF_0886 IPR010132 ATPase, type I secretion system, HlyB YPDSF_0886 IPR005074 Peptidase C39, bacteriocin processing YPDSF_0888 IPR019690 Protein of unknown function DUF2569 YPDSF_0889 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA YPDSF_0889 IPR003667 NqrDE/RnfAE YPDSF_0890 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPDSF_0890 IPR007202 4Fe-4S domain YPDSF_0890 IPR011005 Dihydropteroate synthase-like YPDSF_0890 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB YPDSF_0890 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria YPDSF_0890 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPDSF_0891 IPR019554 Soluble ligand binding domain YPDSF_0891 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPDSF_0891 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPDSF_0891 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily YPDSF_0891 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain YPDSF_0891 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC YPDSF_0891 IPR009051 Alpha-helical ferredoxin YPDSF_0891 IPR026902 RnfC Barrel sandwich hybrid domain YPDSF_0892 IPR009057 Homeobox-like domain superfamily YPDSF_0892 IPR018062 HTH domain AraC-type, conserved site YPDSF_0892 IPR018060 DNA binding HTH domain, AraC-type YPDSF_0892 IPR029442 GyrI-like small molecule binding domain YPDSF_0892 IPR010499 Bacterial transcription activator, effector binding YPDSF_0892 IPR020449 Transcription regulator HTH, AraC- type YPDSF_0892 IPR011256 Regulatory factor, effector binding domain superfamily YPDSF_0893 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D YPDSF_0893 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD YPDSF_0894 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG YPDSF_0894 IPR007329 FMN-binding YPDSF_0895 IPR010968 Ion-translocating oxidoreductase complex subunit E YPDSF_0895 IPR003667 NqrDE/RnfAE YPDSF_0896 IPR005759 Endonuclease III YPDSF_0896 IPR000445 Helix-hairpin-helix motif YPDSF_0896 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal YPDSF_0896 IPR004035 Endonuclease III, iron-sulphur binding site YPDSF_0896 IPR011257 DNA glycosylase YPDSF_0896 IPR003265 HhH-GPD domain YPDSF_0896 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif YPDSF_0896 IPR004036 Endonuclease III-like, conserved site-2 YPDSF_0897 IPR036291 NAD(P)-binding domain superfamily YPDSF_0897 IPR001509 NAD-dependent epimerase/dehydratase YPDSF_0898 IPR036259 MFS transporter superfamily YPDSF_0898 IPR011701 Major facilitator superfamily YPDSF_0898 IPR020846 Major facilitator superfamily domain YPDSF_0899 IPR022966 Ribonuclease II/R, conserved site YPDSF_0899 IPR004476 Ribonuclease II/ribonuclease R YPDSF_0899 IPR003029 S1 domain YPDSF_0899 IPR040476 RNase II/RNase R, cold shock domain YPDSF_0899 IPR011804 Ribonuclease II YPDSF_0899 IPR013223 Ribonuclease B, N-terminal OB domain YPDSF_0899 IPR012340 Nucleic acid-binding, OB-fold YPDSF_0899 IPR001900 Ribonuclease II/R YPDSF_0899 IPR011129 Cold shock domain YPDSF_0900 IPR025299 CstA, C-terminal domain YPDSF_0900 IPR003706 CstA, N-terminal domain YPDSF_0901 IPR007423 Selenoprotein, putative YPDSF_0902 IPR018225 Transaldolase, active site YPDSF_0902 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase YPDSF_0902 IPR001585 Transaldolase/Fructose-6-phosphate aldolase YPDSF_0902 IPR023001 Fructose-6-phosphate aldolase YPDSF_0902 IPR013785 Aldolase-type TIM barrel YPDSF_0902 IPR033919 Transaldolase/Fructose-6-phosphate aldolase, archaeal/bacterial YPDSF_0904 IPR001303 Class II aldolase/adducin N-terminal YPDSF_0904 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPDSF_0904 IPR004661 L-ribulose-5-phosphate 4-epimerase YPDSF_0904 IPR033748 L-ribulose-5-phosphate 4-epimerase AraD YPDSF_0906 IPR001950 SUI1 domain YPDSF_0906 IPR005872 Archaeal/bacterial translation initiation factor SUI1 YPDSF_0906 IPR036877 SUI1 domain superfamily YPDSF_0907 IPR011060 Ribulose-phosphate binding barrel YPDSF_0907 IPR014732 Orotidine 5'-phosphate decarboxylase YPDSF_0907 IPR018089 Orotidine 5'-phosphate decarboxylase, active site YPDSF_0907 IPR001754 Orotidine 5'-phosphate decarboxylase domain YPDSF_0907 IPR013785 Aldolase-type TIM barrel YPDSF_0909 IPR019734 Tetratricopeptide repeat YPDSF_0909 IPR030865 Lipopolysaccharide assembly protein B YPDSF_0909 IPR013026 Tetratricopeptide repeat-containing domain YPDSF_0909 IPR041166 LapB, rubredoxin metal binding domain YPDSF_0909 IPR011990 Tetratricopeptide-like helical domain superfamily YPDSF_0910 IPR032906 Lipopolysaccharide assembly protein A YPDSF_0910 IPR010445 Lipopolysaccharide assembly protein A domain YPDSF_0911 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YPDSF_0911 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily YPDSF_0912 IPR000926 GTP cyclohydrolase II, RibA YPDSF_0912 IPR032677 GTP cyclohydrolase II YPDSF_0912 IPR036144 RibA-like superfamily YPDSF_0913 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain YPDSF_0913 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 YPDSF_0913 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel YPDSF_0913 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain YPDSF_0913 IPR006249 Aconitase/Iron-responsive element-binding protein 2 YPDSF_0913 IPR018136 Aconitase family, 4Fe-4S cluster binding site YPDSF_0913 IPR036008 Aconitase, iron-sulfur domain YPDSF_0915 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_0915 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0915 IPR005119 LysR, substrate-binding YPDSF_0915 IPR000847 Transcription regulator HTH, LysR YPDSF_0916 IPR002686 Transposase IS200-like YPDSF_0916 IPR036515 Transposase IS200-like superfamily YPDSF_0917 IPR000380 DNA topoisomerase, type IA YPDSF_0917 IPR003601 DNA topoisomerase, type IA, domain 2 YPDSF_0917 IPR023406 DNA topoisomerase, type IA, active site YPDSF_0917 IPR013497 DNA topoisomerase, type IA, central YPDSF_0917 IPR028612 DNA topoisomerase I, type IA YPDSF_0917 IPR034149 DNA topoisomerase 1, TOPRIM domain YPDSF_0917 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type YPDSF_0917 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 YPDSF_0917 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 YPDSF_0917 IPR023405 DNA topoisomerase, type IA, core domain YPDSF_0917 IPR006171 TOPRIM domain YPDSF_0917 IPR003602 DNA topoisomerase, type IA, DNA-binding domain YPDSF_0917 IPR013498 DNA topoisomerase, type IA, zn finger YPDSF_0917 IPR005733 DNA topoisomerase I, bacterial-type YPDSF_0917 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 YPDSF_0918 IPR038191 YciN superfamily YPDSF_0918 IPR019633 Protein of unknown function DUF2498 YPDSF_0919 IPR029045 ClpP/crotonase-like domain superfamily YPDSF_0919 IPR002142 Peptidase S49 YPDSF_0919 IPR013703 Peptidase S49, N-terminal proteobacteria YPDSF_0920 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPDSF_0920 IPR036291 NAD(P)-binding domain superfamily YPDSF_0920 IPR002347 Short-chain dehydrogenase/reductase SDR YPDSF_0921 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0921 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR YPDSF_0922 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F YPDSF_0922 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPDSF_0922 IPR006145 Pseudouridine synthase, RsuA/RluA YPDSF_0922 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site YPDSF_0922 IPR002942 RNA-binding S4 domain YPDSF_0922 IPR036986 RNA-binding S4 domain superfamily YPDSF_0923 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily YPDSF_0923 IPR006070 YrdC-like domain YPDSF_0924 IPR004013 PHP domain YPDSF_0924 IPR016195 Polymerase/histidinol phosphatase-like YPDSF_0924 IPR003141 Polymerase/histidinol phosphatase, N-terminal YPDSF_0925 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial YPDSF_0925 IPR006805 Anthranilate synthase component I, N-terminal YPDSF_0925 IPR019999 Anthranilate synthase component I-like YPDSF_0925 IPR015890 Chorismate-utilising enzyme, C-terminal YPDSF_0925 IPR005801 ADC synthase YPDSF_0926 IPR029062 Class I glutamine amidotransferase-like YPDSF_0926 IPR017926 Glutamine amidotransferase YPDSF_0926 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain YPDSF_0927 IPR000312 Glycosyl transferase, family 3 YPDSF_0927 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily YPDSF_0927 IPR005940 Anthranilate phosphoribosyl transferase YPDSF_0927 IPR017459 Glycosyl transferase family 3, N-terminal domain YPDSF_0927 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily YPDSF_0928 IPR001468 Indole-3-glycerol phosphate synthase, conserved site YPDSF_0928 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) YPDSF_0928 IPR011060 Ribulose-phosphate binding barrel YPDSF_0928 IPR013785 Aldolase-type TIM barrel YPDSF_0928 IPR013798 Indole-3-glycerol phosphate synthase YPDSF_0929 IPR001926 Pyridoxal-phosphate dependent enzyme YPDSF_0929 IPR006653 Tryptophan synthase, beta chain, conserved site YPDSF_0929 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPDSF_0929 IPR023026 Tryptophan synthase beta chain/beta chain-like YPDSF_0929 IPR006654 Tryptophan synthase, beta chain YPDSF_0930 IPR018204 Tryptophan synthase, alpha chain, active site YPDSF_0930 IPR002028 Tryptophan synthase, alpha chain YPDSF_0930 IPR013785 Aldolase-type TIM barrel YPDSF_0930 IPR011060 Ribulose-phosphate binding barrel YPDSF_0933 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPDSF_0933 IPR005618 Outer membrane protein, OmpW YPDSF_0935 IPR009627 Uncharacterised protein family UPF0259 YPDSF_0938 IPR006008 Intracellular septation protein A YPDSF_0939 IPR033120 Hotdog acyl-CoA thioesterase (ACOT)-type domain YPDSF_0939 IPR029069 HotDog domain superfamily YPDSF_0939 IPR006683 Thioesterase domain YPDSF_0939 IPR040170 Cytosolic acyl coenzyme A thioester hydrolase YPDSF_0940 IPR001207 Transposase, mutator type YPDSF_0941 IPR003538 Gram-negative bacterial TonB protein YPDSF_0941 IPR006260 TonB/TolA, C-terminal YPDSF_0941 IPR037682 TonB, C-terminal YPDSF_0942 IPR011008 Dimeric alpha-beta barrel YPDSF_0942 IPR005545 YCII-related YPDSF_0946 IPR027385 Outer membrane protein beta-barrel domain YPDSF_0946 IPR000758 Virulence-related outer membrane protein YPDSF_0946 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPDSF_0947 IPR022924 Cardiolipin synthase YPDSF_0947 IPR030840 Cardiolipin synthase A YPDSF_0947 IPR001736 Phospholipase D/Transphosphatidylase YPDSF_0947 IPR025202 Phospholipase D-like domain YPDSF_0947 IPR027379 Cardiolipin synthase N-terminal YPDSF_0948 IPR036763 Putative dsDNA mimic superfamily YPDSF_0948 IPR007376 dsDNA mimic, putative YPDSF_0950 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0950 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPDSF_0950 IPR017871 ABC transporter, conserved site YPDSF_0950 IPR003439 ABC transporter-like YPDSF_0950 IPR003593 AAA+ ATPase domain YPDSF_0951 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPDSF_0951 IPR017871 ABC transporter, conserved site YPDSF_0951 IPR003593 AAA+ ATPase domain YPDSF_0951 IPR003439 ABC transporter-like YPDSF_0951 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0952 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPDSF_0952 IPR035906 MetI-like superfamily YPDSF_0952 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_0953 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_0953 IPR035906 MetI-like superfamily YPDSF_0954 IPR000914 Solute-binding protein family 5 domain YPDSF_0954 IPR023765 Solute-binding protein family 5, conserved site YPDSF_0954 IPR039424 Solute-binding protein family 5 YPDSF_0954 IPR030678 Peptide/nickel binding protein, MppA-type YPDSF_0955 IPR002771 Multiple antibiotic resistance (MarC)-related YPDSF_0956 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YPDSF_0956 IPR039697 Iron-type alcohol dehydrogenase-like YPDSF_0956 IPR015590 Aldehyde dehydrogenase domain YPDSF_0956 IPR016162 Aldehyde dehydrogenase, N-terminal YPDSF_0956 IPR016163 Aldehyde dehydrogenase, C-terminal YPDSF_0956 IPR016161 Aldehyde/histidinol dehydrogenase YPDSF_0956 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA YPDSF_0956 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase YPDSF_0956 IPR034789 Bifunctional aldehyde-alcohol dehydrogenase, C-terminal domain YPDSF_0957 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0957 IPR001267 Thymidine kinase YPDSF_0957 IPR020633 Thymidine kinase, conserved site YPDSF_0958 IPR027444 Histone-like protein H-NS, C-terminal domain YPDSF_0958 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily YPDSF_0958 IPR001801 Histone-like protein H-NS YPDSF_0958 IPR027454 Histone-like protein H-NS, N-terminal YPDSF_0959 IPR001207 Transposase, mutator type YPDSF_0960 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation YPDSF_0960 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily YPDSF_0960 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type YPDSF_0960 IPR017476 UDP-glucose/GDP-mannose dehydrogenase YPDSF_0960 IPR036291 NAD(P)-binding domain superfamily YPDSF_0960 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal YPDSF_0960 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal YPDSF_0960 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPDSF_0961 IPR036457 PPM-type phosphatase domain superfamily YPDSF_0961 IPR028616 Regulator of RpoS YPDSF_0961 IPR001789 Signal transduction response regulator, receiver domain YPDSF_0961 IPR011006 CheY-like superfamily YPDSF_0961 IPR039420 Transcriptional regulatory protein WalR-like YPDSF_0962 IPR023006 Uncharacterised protein family UPF0225 YPDSF_0962 IPR004027 SEC-C motif YPDSF_0962 IPR032710 NTF2-like domain superfamily YPDSF_0963 IPR004810 Formyltetrahydrofolate deformylase YPDSF_0963 IPR036477 Formyl transferase, N-terminal domain superfamily YPDSF_0963 IPR002912 ACT domain YPDSF_0963 IPR002376 Formyl transferase, N-terminal YPDSF_0963 IPR041729 Formyltetrahydrofolate deformylase, C-terminal hydrolase domain YPDSF_0964 IPR001207 Transposase, mutator type YPDSF_0965 IPR000847 Transcription regulator HTH, LysR YPDSF_0965 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0965 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_0965 IPR005119 LysR, substrate-binding YPDSF_0966 IPR037493 Exodeoxyribonuclease III-like YPDSF_0966 IPR020848 AP endonuclease 1, conserved site YPDSF_0966 IPR005135 Endonuclease/exonuclease/phosphatase YPDSF_0966 IPR036691 Endonuclease/exonuclease/phosphatase superfamily YPDSF_0966 IPR004808 AP endonuclease 1 YPDSF_0966 IPR020847 AP endonuclease 1, binding site YPDSF_0967 IPR000086 NUDIX hydrolase domain YPDSF_0967 IPR020084 NUDIX hydrolase, conserved site YPDSF_0967 IPR015797 NUDIX hydrolase-like domain superfamily YPDSF_0967 IPR020476 NUDIX hydrolase YPDSF_0968 IPR009971 Protein of unknown function DUF1496 YPDSF_0969 IPR003602 DNA topoisomerase, type IA, DNA-binding domain YPDSF_0969 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 YPDSF_0969 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 YPDSF_0969 IPR013497 DNA topoisomerase, type IA, central YPDSF_0969 IPR005738 DNA topoisomerase III YPDSF_0969 IPR023406 DNA topoisomerase, type IA, active site YPDSF_0969 IPR003601 DNA topoisomerase, type IA, domain 2 YPDSF_0969 IPR000380 DNA topoisomerase, type IA YPDSF_0969 IPR006171 TOPRIM domain YPDSF_0969 IPR034144 DNA topoisomerase 3-like, TOPRIM domain YPDSF_0969 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 YPDSF_0969 IPR023405 DNA topoisomerase, type IA, core domain YPDSF_0970 IPR010918 PurM-like, C-terminal domain YPDSF_0970 IPR036676 PurM-like, C-terminal domain superfamily YPDSF_0970 IPR016188 PurM-like, N-terminal domain YPDSF_0970 IPR036921 PurM-like, N-terminal domain superfamily YPDSF_0970 IPR023061 Selenophosphate synthetase, class I YPDSF_0970 IPR004536 Selenophosphate synthetase YPDSF_0971 IPR029479 Nitroreductase YPDSF_0971 IPR026021 Putative NAD(P)H nitroreductase YdjA-like YPDSF_0971 IPR000415 Nitroreductase-like YPDSF_0972 IPR004635 Peptidase S49, SppA YPDSF_0972 IPR029045 ClpP/crotonase-like domain superfamily YPDSF_0972 IPR004634 Peptidase S49, protease IV YPDSF_0972 IPR033854 Signal peptide peptidase A YPDSF_0972 IPR002142 Peptidase S49 YPDSF_0973 IPR036152 Asparaginase/glutaminase-like superfamily YPDSF_0973 IPR006034 Asparaginase/glutaminase-like YPDSF_0973 IPR020827 Asparaginase/glutaminase, active site 1 YPDSF_0973 IPR027475 Asparaginase/glutaminase, active site 2 YPDSF_0973 IPR040919 Asparaginase/glutaminase, C-terminal YPDSF_0973 IPR037152 L-asparaginase, N-terminal domain superfamily YPDSF_0973 IPR027473 L-asparaginase, C-terminal YPDSF_0973 IPR041725 Type I (cytosolic) L-asparaginase YPDSF_0973 IPR006033 Type I L-asparaginase family YPDSF_0973 IPR027474 L-asparaginase, N-terminal YPDSF_0974 IPR000868 Isochorismatase-like YPDSF_0974 IPR036380 Isochorismatase-like superfamily YPDSF_0975 IPR009749 Protein of unknown function DUF1315 YPDSF_0976 IPR011057 Mss4-like superfamily YPDSF_0976 IPR028427 Peptide methionine sulfoxide reductase YPDSF_0976 IPR002579 Peptide methionine sulphoxide reductase MrsB YPDSF_0977 IPR036291 NAD(P)-binding domain superfamily YPDSF_0977 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain YPDSF_0977 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YPDSF_0977 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site YPDSF_0977 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I YPDSF_0977 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family YPDSF_0978 IPR014718 Glycoside hydrolase-type carbohydrate-binding YPDSF_0978 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase YPDSF_0978 IPR025532 Glucose-6-phosphate 1-epimerase YPDSF_0978 IPR011013 Galactose mutarotase-like domain superfamily YPDSF_0979 IPR010583 MltA-interacting MipA YPDSF_0980 IPR013153 PrkA AAA domain YPDSF_0980 IPR010650 PrkA C-terminal domain YPDSF_0980 IPR016230 Serine-protein kinase, PrkA YPDSF_0980 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_0981 IPR006698 Uncharacterised protein family UPF0229 YPDSF_0983 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_0983 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0983 IPR000847 Transcription regulator HTH, LysR YPDSF_0983 IPR005119 LysR, substrate-binding YPDSF_0984 IPR011051 RmlC-like cupin domain superfamily YPDSF_0984 IPR014710 RmlC-like jelly roll fold YPDSF_0984 IPR003829 Pirin, N-terminal domain YPDSF_0984 IPR008778 Pirin, C-terminal domain YPDSF_0984 IPR012093 Pirin YPDSF_0985 IPR023697 Multidrug resistance protein MdtL YPDSF_0985 IPR036259 MFS transporter superfamily YPDSF_0985 IPR020846 Major facilitator superfamily domain YPDSF_0985 IPR011701 Major facilitator superfamily YPDSF_0986 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_0986 IPR006076 FAD dependent oxidoreductase YPDSF_0986 IPR023080 D-amino acid dehydrogenase DadA YPDSF_0987 IPR007390 Sporulation stage V, protein R YPDSF_0988 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_0988 IPR000524 Transcription regulator HTH, GntR YPDSF_0988 IPR008920 Transcription regulator FadR/GntR, C-terminal YPDSF_0988 IPR028374 FadR, C-terminal domain YPDSF_0988 IPR014178 Fatty acid response transcription factor FadR YPDSF_0988 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_0989 IPR004671 Na+/H+ antiporter NhaB YPDSF_0990 IPR023380 DsbB-like superfamily YPDSF_0990 IPR022920 Disulphide bond formation protein DsbB YPDSF_0990 IPR003752 Disulphide bond formation protein DsbB/BdbC YPDSF_0993 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_0993 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_0993 IPR016454 Cysteine desulfurase YPDSF_0993 IPR010240 Cysteine desulfurase IscS YPDSF_0993 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPDSF_0993 IPR000192 Aminotransferase class V domain YPDSF_0993 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_0997 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly YPDSF_1008 IPR002686 Transposase IS200-like YPDSF_1008 IPR036515 Transposase IS200-like superfamily YPDSF_1032 IPR010534 Bacteriophage 933W, GpQ YPDSF_1034 IPR036619 NinB superfamily YPDSF_1034 IPR008711 Recombinase NinB YPDSF_1036 IPR001270 ClpA/B family YPDSF_1036 IPR003593 AAA+ ATPase domain YPDSF_1036 IPR002611 IstB-like ATP-binding protein YPDSF_1036 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1036 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_1037 IPR006120 Resolvase, HTH domain YPDSF_1037 IPR017894 HTH domain, IS21 transposase-type YPDSF_1037 IPR036397 Ribonuclease H superfamily YPDSF_1037 IPR012337 Ribonuclease H-like superfamily YPDSF_1037 IPR001584 Integrase, catalytic core YPDSF_1038 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPDSF_1038 IPR002104 Integrase, catalytic domain YPDSF_1038 IPR010998 Integrase/recombinase, N-terminal YPDSF_1038 IPR022000 Min27-like integrase, DNA-binding domain YPDSF_1038 IPR013762 Integrase-like, catalytic domain superfamily YPDSF_1039 IPR008228 Uncharacterised conserved protein UCP006173 YPDSF_1039 IPR005358 Putative zinc- or iron-chelating domain containing protein YPDSF_1040 IPR011234 Fumarylacetoacetase-like, C-terminal YPDSF_1040 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily YPDSF_1041 IPR031304 Transglycosylase SLT domain 2 YPDSF_1041 IPR011757 Lytic transglycosylase MltB YPDSF_1041 IPR023346 Lysozyme-like domain superfamily YPDSF_1042 IPR027354 YcgL domain YPDSF_1042 IPR038068 YcgL-like superfamily YPDSF_1043 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal YPDSF_1043 IPR013033 Septum formation inhibitor MinC YPDSF_1043 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily YPDSF_1043 IPR005526 Septum formation inhibitor MinC, C-terminal YPDSF_1043 IPR007874 Septum formation inhibitor MinC, N-terminal YPDSF_1043 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily YPDSF_1044 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1044 IPR025501 ATP binding protein MinD YPDSF_1044 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain YPDSF_1044 IPR010223 ATP binding protein MinD, bacterial-type YPDSF_1045 IPR036707 Cell division topological specificity factor MinE superfamily YPDSF_1045 IPR005527 Cell division topological specificity factor MinE YPDSF_1046 IPR002562 3'-5' exonuclease domain YPDSF_1046 IPR006292 Ribonuclease D YPDSF_1046 IPR002121 HRDC domain YPDSF_1046 IPR012337 Ribonuclease H-like superfamily YPDSF_1046 IPR036397 Ribonuclease H superfamily YPDSF_1046 IPR010997 HRDC-like superfamily YPDSF_1047 IPR020845 AMP-binding, conserved site YPDSF_1047 IPR000873 AMP-dependent synthetase/ligase YPDSF_1047 IPR042099 AMP-dependent synthetase-like superfamily YPDSF_1047 IPR025110 AMP-binding enzyme, C-terminal domain YPDSF_1050 IPR000905 Gcp-like domain YPDSF_1050 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB YPDSF_1051 IPR006555 ATP-dependent helicase, C-terminal YPDSF_1051 IPR006935 Helicase/UvrB, N-terminal YPDSF_1051 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1051 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type YPDSF_1051 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPDSF_1052 IPR006175 YjgF/YER057c/UK114 family YPDSF_1052 IPR035709 RutC family, YoaB-like YPDSF_1052 IPR035959 RutC-like superfamily YPDSF_1052 IPR019897 RidA, conserved site YPDSF_1053 IPR023737 Spermidine export protein MdtI YPDSF_1053 IPR000390 Small multidrug resistance protein family YPDSF_1054 IPR023740 Spermidine export protein MdtJ YPDSF_1054 IPR000390 Small multidrug resistance protein family YPDSF_1055 IPR000887 KDPG/KHG aldolase YPDSF_1055 IPR013785 Aldolase-type TIM barrel YPDSF_1055 IPR031337 KDPG/KHG aldolase, active site 1 YPDSF_1055 IPR031338 KDPG/KHG aldolase, active site 2 YPDSF_1056 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal YPDSF_1056 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding YPDSF_1056 IPR036291 NAD(P)-binding domain superfamily YPDSF_1056 IPR001282 Glucose-6-phosphate dehydrogenase YPDSF_1056 IPR019796 Glucose-6-phosphate dehydrogenase, active site YPDSF_1057 IPR009057 Homeobox-like domain superfamily YPDSF_1057 IPR000281 Helix-turn-helix protein RpiR YPDSF_1057 IPR035472 RpiR-like, SIS domain YPDSF_1057 IPR001347 Sugar isomerase (SIS) YPDSF_1057 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_1058 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPDSF_1058 IPR001697 Pyruvate kinase YPDSF_1058 IPR040442 Pyruvate kinase-like domain superfamily YPDSF_1058 IPR011037 Pyruvate kinase-like, insert domain superfamily YPDSF_1058 IPR015793 Pyruvate kinase, barrel YPDSF_1058 IPR036918 Pyruvate kinase, C-terminal domain superfamily YPDSF_1058 IPR015806 Pyruvate kinase, insert domain superfamily YPDSF_1058 IPR015795 Pyruvate kinase, C-terminal YPDSF_1058 IPR018209 Pyruvate kinase, active site YPDSF_1059 IPR004960 Bacterial lipid A biosynthesis acyltransferase YPDSF_1059 IPR011921 Lipid A biosynthesis myristoyltransferase YPDSF_1060 IPR018392 LysM domain YPDSF_1060 IPR011055 Duplicated hybrid motif YPDSF_1060 IPR013731 Opacity-associated protein A, N-terminal YPDSF_1060 IPR016047 Peptidase M23 YPDSF_1061 IPR006127 Periplasmic solute binding protein, ZnuA-like YPDSF_1061 IPR035520 High-affinity zinc uptake system protein ZnuA YPDSF_1062 IPR003439 ABC transporter-like YPDSF_1062 IPR003593 AAA+ ATPase domain YPDSF_1062 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1062 IPR017882 Zinc import ATP-binding protein ZnuC YPDSF_1063 IPR037294 ABC transporter, BtuC-like YPDSF_1063 IPR001626 ABC transporter, TroCD-like YPDSF_1064 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_1064 IPR041445 RuvB, AAA lid domain YPDSF_1064 IPR003593 AAA+ ATPase domain YPDSF_1064 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_1064 IPR004605 DNA helicase, Holliday junction RuvB-type YPDSF_1064 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1064 IPR008824 RuvB-like P-loop domain YPDSF_1064 IPR008823 RuvB C-terminal winged helix domain YPDSF_1065 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 YPDSF_1065 IPR036267 RuvA, C-terminal domain superfamily YPDSF_1065 IPR012340 Nucleic acid-binding, OB-fold YPDSF_1065 IPR000085 Bacterial DNA recombination protein RuvA YPDSF_1065 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial YPDSF_1065 IPR010994 RuvA domain 2-like YPDSF_1065 IPR011114 Holliday junction DNA helicase RuvA, C-terminal YPDSF_1066 IPR002176 Crossover junction endodeoxyribonuclease RuvC YPDSF_1066 IPR012337 Ribonuclease H-like superfamily YPDSF_1066 IPR036397 Ribonuclease H superfamily YPDSF_1066 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site YPDSF_1067 IPR029072 YebC-like YPDSF_1067 IPR026564 Transcriptional regulator TACO1-like, domain 3 YPDSF_1067 IPR002876 Transcriptional regulator TACO1-like YPDSF_1067 IPR017856 Integrase-like, N-terminal YPDSF_1068 IPR003564 Dihydroneopterin triphosphate diphosphatase YPDSF_1068 IPR015797 NUDIX hydrolase-like domain superfamily YPDSF_1068 IPR020084 NUDIX hydrolase, conserved site YPDSF_1068 IPR000086 NUDIX hydrolase domain YPDSF_1069 IPR012340 Nucleic acid-binding, OB-fold YPDSF_1069 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YPDSF_1069 IPR029351 GAD domain YPDSF_1069 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YPDSF_1069 IPR006195 Aminoacyl-tRNA synthetase, class II YPDSF_1069 IPR004524 Aspartate-tRNA ligase, type 1 YPDSF_1069 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb YPDSF_1069 IPR004115 GAD-like domain superfamily YPDSF_1070 IPR002763 Protein of unknown function DUF72 YPDSF_1070 IPR036520 UPF0759 superfamily YPDSF_1071 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein YPDSF_1071 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily YPDSF_1072 IPR005271 Carboxy-S-adenosyl-L-methionine synthase YPDSF_1072 IPR041698 Methyltransferase domain 25 YPDSF_1072 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_1073 IPR010017 tRNA U34 carboxymethyltransferase YPDSF_1073 IPR027555 tRNA (mo5U34)-methyltransferase-like YPDSF_1073 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_1074 IPR023648 Copper homeostasis CutC domain YPDSF_1074 IPR005627 Copper homeostasis protein CutC YPDSF_1074 IPR036822 Copper homeostasis (CutC) domain superfamily YPDSF_1075 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YPDSF_1075 IPR010393 Protein of unknown function DUF991 YPDSF_1077 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YPDSF_1077 IPR001278 Arginine-tRNA ligase YPDSF_1077 IPR005148 Arginyl tRNA synthetase N-terminal domain YPDSF_1077 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily YPDSF_1077 IPR035684 Arginyl-tRNA synthetase, catalytic core domain YPDSF_1077 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPDSF_1077 IPR008909 DALR anticodon binding YPDSF_1077 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_1078 IPR008638 Filamentous haemagglutinin, N-terminal YPDSF_1078 IPR025157 Hemagglutinin repeat YPDSF_1078 IPR012334 Pectin lyase fold YPDSF_1078 IPR011050 Pectin lyase fold/virulence factor YPDSF_1079 IPR035251 ShlB, POTRA domain YPDSF_1079 IPR005565 Haemolysin activator HlyB, C-terminal YPDSF_1079 IPR034746 POTRA domain YPDSF_1079 IPR027282 Two partner secretion pathway transporter YPDSF_1079 IPR013686 Polypeptide-transport-associated, ShlB-type YPDSF_1080 IPR004268 Peptidoglycan biosynthesis protein MurJ YPDSF_1081 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_1081 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_1081 IPR007432 Protein of unknown function DUF480 YPDSF_1082 IPR016181 Acyl-CoA N-acyltransferase YPDSF_1082 IPR000182 GNAT domain YPDSF_1083 IPR036259 MFS transporter superfamily YPDSF_1083 IPR011701 Major facilitator superfamily YPDSF_1083 IPR020846 Major facilitator superfamily domain YPDSF_1083 IPR022855 Multidrug resistance protein MdtH YPDSF_1084 IPR010835 Protein of unknown function DUF1439 YPDSF_1085 IPR026269 Tat proofreading chaperone DmsD-type YPDSF_1085 IPR020945 DMSO/Nitrate reductase chaperone YPDSF_1085 IPR036411 TorD-like superfamily YPDSF_1086 IPR023710 Probable phosphatase YcdX YPDSF_1086 IPR016195 Polymerase/histidinol phosphatase-like YPDSF_1086 IPR003141 Polymerase/histidinol phosphatase, N-terminal YPDSF_1086 IPR004013 PHP domain YPDSF_1087 IPR022687 DTXR-type HTH domain YPDSF_1087 IPR000600 ROK family YPDSF_1087 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_1087 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_1088 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily YPDSF_1088 IPR030395 Glycerophosphodiester phosphodiesterase domain YPDSF_1089 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA YPDSF_1089 IPR003593 AAA+ ATPase domain YPDSF_1089 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1089 IPR017871 ABC transporter, conserved site YPDSF_1089 IPR003439 ABC transporter-like YPDSF_1089 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit YPDSF_1089 IPR008995 Molybdate/tungstate binding, C-terminal YPDSF_1089 IPR013611 Transport-associated OB, type 2 YPDSF_1091 IPR013611 Transport-associated OB, type 2 YPDSF_1091 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit YPDSF_1091 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1091 IPR008995 Molybdate/tungstate binding, C-terminal YPDSF_1091 IPR017871 ABC transporter, conserved site YPDSF_1091 IPR003439 ABC transporter-like YPDSF_1091 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA YPDSF_1091 IPR003593 AAA+ ATPase domain YPDSF_1092 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_1092 IPR035906 MetI-like superfamily YPDSF_1093 IPR035906 MetI-like superfamily YPDSF_1093 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_1095 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily YPDSF_1095 IPR030395 Glycerophosphodiester phosphodiesterase domain YPDSF_1096 IPR018045 Sulphate anion transporter, conserved site YPDSF_1096 IPR002645 STAS domain YPDSF_1096 IPR036513 STAS domain superfamily YPDSF_1096 IPR011547 SLC26A/SulP transporter domain YPDSF_1096 IPR001902 SLC26A/SulP transporter YPDSF_1097 IPR006269 3-deoxy-8-phosphooctulonate synthase YPDSF_1097 IPR013785 Aldolase-type TIM barrel YPDSF_1097 IPR006218 DAHP synthetase I/KDSA YPDSF_1098 IPR032698 Protein SirB1, N-terminal YPDSF_1099 IPR007360 Invasion gene expression up-regulator, SirB YPDSF_1100 IPR025714 Methyltransferase domain YPDSF_1100 IPR040758 Release factor glutamine methyltransferase, N-terminal domain YPDSF_1100 IPR004556 Methyltransferase HemK-like YPDSF_1100 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPDSF_1100 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific YPDSF_1100 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_1101 IPR004373 Peptide chain release factor 1 YPDSF_1101 IPR000352 Peptide chain release factor class I YPDSF_1101 IPR005139 Peptide chain release factor YPDSF_1102 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily YPDSF_1102 IPR036291 NAD(P)-binding domain superfamily YPDSF_1102 IPR018214 Glutamyl-tRNA reductase, conserved site YPDSF_1102 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YPDSF_1102 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal YPDSF_1102 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain YPDSF_1102 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase YPDSF_1102 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily YPDSF_1103 IPR004565 Outer membrane lipoprotein LolB YPDSF_1103 IPR029046 Lipoprotein localisation LolA/LolB/LppX YPDSF_1104 IPR006204 GHMP kinase N-terminal domain YPDSF_1104 IPR013750 GHMP kinase, C-terminal domain YPDSF_1104 IPR036554 GHMP kinase, C-terminal domain superfamily YPDSF_1104 IPR020568 Ribosomal protein S5 domain 2-type fold YPDSF_1104 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YPDSF_1104 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPDSF_1106 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain YPDSF_1106 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site YPDSF_1106 IPR000836 Phosphoribosyltransferase domain YPDSF_1106 IPR029057 Phosphoribosyltransferase-like YPDSF_1106 IPR005946 Ribose-phosphate pyrophosphokinase YPDSF_1106 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type YPDSF_1107 IPR019698 Protein of unknown function DUF2583 YPDSF_1108 IPR001328 Peptidyl-tRNA hydrolase YPDSF_1108 IPR018171 Peptidyl-tRNA hydrolase, conserved site YPDSF_1108 IPR036416 Peptidyl-tRNA hydrolase superfamily YPDSF_1109 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 YPDSF_1109 IPR041706 YchF, N-terminal YPDSF_1109 IPR006073 GTP binding domain YPDSF_1109 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1109 IPR004095 TGS YPDSF_1109 IPR012676 TGS-like YPDSF_1109 IPR012675 Beta-grasp domain superfamily YPDSF_1109 IPR031167 OBG-type guanine nucleotide-binding (G) domain YPDSF_1109 IPR023192 TGS-like domain superfamily YPDSF_1109 IPR013029 YchF, C-terminal domain YPDSF_1118 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain YPDSF_1118 IPR029058 Alpha/Beta hydrolase fold YPDSF_1119 IPR011006 CheY-like superfamily YPDSF_1119 IPR001867 OmpR/PhoB-type DNA-binding domain YPDSF_1119 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response YPDSF_1119 IPR016032 Signal transduction response regulator, C-terminal effector YPDSF_1119 IPR001789 Signal transduction response regulator, receiver domain YPDSF_1119 IPR039420 Transcriptional regulatory protein WalR-like YPDSF_1119 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_1120 IPR006120 Resolvase, HTH domain YPDSF_1120 IPR012337 Ribonuclease H-like superfamily YPDSF_1120 IPR036397 Ribonuclease H superfamily YPDSF_1120 IPR001584 Integrase, catalytic core YPDSF_1120 IPR017894 HTH domain, IS21 transposase-type YPDSF_1121 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1121 IPR002611 IstB-like ATP-binding protein YPDSF_1121 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_1121 IPR003593 AAA+ ATPase domain YPDSF_1121 IPR001270 ClpA/B family YPDSF_1122 IPR011006 CheY-like superfamily YPDSF_1122 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response YPDSF_1122 IPR001789 Signal transduction response regulator, receiver domain YPDSF_1122 IPR001867 OmpR/PhoB-type DNA-binding domain YPDSF_1122 IPR039420 Transcriptional regulatory protein WalR-like YPDSF_1122 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_1123 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_1123 IPR003594 Histidine kinase/HSP90-like ATPase YPDSF_1123 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPDSF_1123 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPDSF_1123 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPDSF_1123 IPR003660 HAMP domain YPDSF_1123 IPR006290 Heavy metal sensor kinase YPDSF_1123 IPR005467 Histidine kinase domain YPDSF_1130 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPDSF_1130 IPR002347 Short-chain dehydrogenase/reductase SDR YPDSF_1130 IPR036291 NAD(P)-binding domain superfamily YPDSF_1131 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_1131 IPR016584 Methyltransferase VrtF-like YPDSF_1131 IPR013217 Methyltransferase type 12 YPDSF_1135 IPR001207 Transposase, mutator type YPDSF_1144 IPR001509 NAD-dependent epimerase/dehydratase YPDSF_1144 IPR036291 NAD(P)-binding domain superfamily YPDSF_1145 IPR016039 Thiolase-like YPDSF_1145 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 YPDSF_1145 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal YPDSF_1145 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPDSF_1146 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal YPDSF_1146 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPDSF_1146 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 YPDSF_1146 IPR016039 Thiolase-like YPDSF_1148 IPR011051 RmlC-like cupin domain superfamily YPDSF_1148 IPR010282 Uncharacterised protein family HutD/Ves YPDSF_1148 IPR023482 Uncharacterised protein family Ves YPDSF_1148 IPR014710 RmlC-like jelly roll fold YPDSF_1149 IPR023512 Deaminase MtaD/DadD YPDSF_1149 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPDSF_1149 IPR032466 Metal-dependent hydrolase YPDSF_1149 IPR006680 Amidohydrolase-related YPDSF_1150 IPR011663 UbiC transcription regulator-associated YPDSF_1150 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_1150 IPR000524 Transcription regulator HTH, GntR YPDSF_1150 IPR010248 Histidine utilization repressor YPDSF_1150 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YPDSF_1150 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_1151 IPR006680 Amidohydrolase-related YPDSF_1151 IPR005920 Imidazolonepropionase YPDSF_1151 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPDSF_1151 IPR032466 Metal-dependent hydrolase YPDSF_1152 IPR001584 Integrase, catalytic core YPDSF_1152 IPR017894 HTH domain, IS21 transposase-type YPDSF_1152 IPR006120 Resolvase, HTH domain YPDSF_1152 IPR012337 Ribonuclease H-like superfamily YPDSF_1152 IPR036397 Ribonuclease H superfamily YPDSF_1153 IPR002611 IstB-like ATP-binding protein YPDSF_1153 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_1153 IPR001270 ClpA/B family YPDSF_1153 IPR003593 AAA+ ATPase domain YPDSF_1153 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1155 IPR001207 Transposase, mutator type YPDSF_1156 IPR023614 Porin domain superfamily YPDSF_1156 IPR001897 Porin, gammaproteobacterial YPDSF_1156 IPR001702 Porin, Gram-negative type YPDSF_1156 IPR013793 Porin, Gram-negative type, conserved site YPDSF_1156 IPR033900 Porin domain, Gram-negative type YPDSF_1157 IPR016681 Succinylglutamate desuccinylase YPDSF_1157 IPR007036 Succinylglutamate desuccinylase/aspartoacylase YPDSF_1158 IPR037031 Succinylarginine dihydrolase superfamily YPDSF_1158 IPR007079 Succinylarginine dihydrolase YPDSF_1159 IPR016163 Aldehyde dehydrogenase, C-terminal YPDSF_1159 IPR016160 Aldehyde dehydrogenase, cysteine active site YPDSF_1159 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPDSF_1159 IPR016161 Aldehyde/histidinol dehydrogenase YPDSF_1159 IPR015590 Aldehyde dehydrogenase domain YPDSF_1159 IPR017649 Succinylglutamate-semialdehyde dehydrogenase YPDSF_1159 IPR016162 Aldehyde dehydrogenase, N-terminal YPDSF_1160 IPR017650 Arginine N-succinyltransferase YPDSF_1160 IPR007041 Arginine N-succinyltransferase AstA/AruG YPDSF_1160 IPR016181 Acyl-CoA N-acyltransferase YPDSF_1161 IPR026330 Succinylornithine transaminase YPDSF_1161 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_1161 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria YPDSF_1161 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_1161 IPR004636 Acetylornithine/Succinylornithine transaminase family YPDSF_1161 IPR005814 Aminotransferase class-III YPDSF_1161 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_1162 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_1162 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_1162 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_1162 IPR000524 Transcription regulator HTH, GntR YPDSF_1162 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_1162 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_1162 IPR004839 Aminotransferase, class I/classII YPDSF_1163 IPR042295 NarX-like, N-terminal domain superfamily YPDSF_1163 IPR029095 NarX-like, N-terminal YPDSF_1163 IPR003660 HAMP domain YPDSF_1163 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain YPDSF_1163 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_1163 IPR005467 Histidine kinase domain YPDSF_1163 IPR003594 Histidine kinase/HSP90-like ATPase YPDSF_1163 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing YPDSF_1164 IPR004713 Calcium/proton exchanger YPDSF_1164 IPR004837 Sodium/calcium exchanger membrane region YPDSF_1165 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1165 IPR003714 PhoH-like protein YPDSF_1168 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD YPDSF_1169 IPR001173 Glycosyltransferase 2-like YPDSF_1169 IPR029044 Nucleotide-diphospho-sugar transferases YPDSF_1169 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA YPDSF_1170 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPDSF_1170 IPR002509 NodB homology domain YPDSF_1170 IPR023854 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB YPDSF_1170 IPR032772 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal YPDSF_1171 IPR011990 Tetratricopeptide-like helical domain superfamily YPDSF_1171 IPR019734 Tetratricopeptide repeat YPDSF_1171 IPR023870 Poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA YPDSF_1171 IPR013026 Tetratricopeptide repeat-containing domain YPDSF_1172 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPDSF_1172 IPR000994 Peptidase M24 YPDSF_1172 IPR036005 Creatinase/aminopeptidase-like YPDSF_1173 IPR004537 Tellurite resistance methyltransferase, TehB YPDSF_1173 IPR015985 Tellurite resistance methyltransferase TehB-like domain YPDSF_1173 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_1173 IPR014710 RmlC-like jelly roll fold YPDSF_1173 IPR015392 Domain of unknown function DUF1971 YPDSF_1173 IPR014431 Tellurite resistance methyltransferase, TehB type-2 YPDSF_1175 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant YPDSF_1175 IPR023555 Thiol-disulphide oxidoreductase ResA YPDSF_1175 IPR036249 Thioredoxin-like superfamily YPDSF_1175 IPR013766 Thioredoxin domain YPDSF_1176 IPR017871 ABC transporter, conserved site YPDSF_1176 IPR003439 ABC transporter-like YPDSF_1176 IPR003593 AAA+ ATPase domain YPDSF_1176 IPR025857 MacB-like periplasmic core domain YPDSF_1176 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1176 IPR017911 ABC transporter, macrolide export, ATP-binding domain YPDSF_1176 IPR003838 ABC transporter permease protein domain YPDSF_1178 IPR017911 ABC transporter, macrolide export, ATP-binding domain YPDSF_1178 IPR025857 MacB-like periplasmic core domain YPDSF_1178 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1178 IPR003593 AAA+ ATPase domain YPDSF_1178 IPR003838 ABC transporter permease protein domain YPDSF_1178 IPR003439 ABC transporter-like YPDSF_1178 IPR017871 ABC transporter, conserved site YPDSF_1180 IPR038482 Periplasmic metal-binding protein tp34-type superfamily YPDSF_1180 IPR018470 Periplasmic metal-binding protein Tp34-type YPDSF_1184 IPR015868 Glutaminase YPDSF_1184 IPR012338 Beta-lactamase/transpeptidase-like YPDSF_1186 IPR037171 NagB/RpiA transferase-like YPDSF_1186 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPDSF_1186 IPR001034 DeoR-type HTH domain YPDSF_1186 IPR014036 DeoR C-terminal sensor domain YPDSF_1186 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_1186 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_1187 IPR004841 Amino acid permease/ SLC12A domain YPDSF_1187 IPR004840 Amino acid permease, conserved site YPDSF_1188 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_1188 IPR004839 Aminotransferase, class I/classII YPDSF_1188 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_1188 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_1189 IPR003667 NqrDE/RnfAE YPDSF_1189 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E YPDSF_1191 IPR006680 Amidohydrolase-related YPDSF_1191 IPR032466 Metal-dependent hydrolase YPDSF_1195 IPR000847 Transcription regulator HTH, LysR YPDSF_1195 IPR037410 HTH-type transcriptional regulator BudR, PBP2 domain YPDSF_1195 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_1195 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_1195 IPR005119 LysR, substrate-binding YPDSF_1196 IPR011206 Citrate lyase beta subunit-like YPDSF_1196 IPR040442 Pyruvate kinase-like domain superfamily YPDSF_1196 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPDSF_1196 IPR005000 HpcH/HpaI aldolase/citrate lyase domain YPDSF_1197 IPR029069 HotDog domain superfamily YPDSF_1197 IPR002539 MaoC-like dehydratase domain YPDSF_1197 IPR016790 Thiol ester hydratase, Rv0216, predicted YPDSF_1198 IPR037171 NagB/RpiA transferase-like YPDSF_1198 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain YPDSF_1198 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily YPDSF_1198 IPR003702 Acetyl-CoA hydrolase/transferase YPDSF_1199 IPR000792 Transcription regulator LuxR, C-terminal YPDSF_1199 IPR016032 Signal transduction response regulator, C-terminal effector YPDSF_1199 IPR011006 CheY-like superfamily YPDSF_1199 IPR001789 Signal transduction response regulator, receiver domain YPDSF_1200 IPR000700 PAS-associated, C-terminal YPDSF_1200 IPR013767 PAS fold YPDSF_1200 IPR005467 Histidine kinase domain YPDSF_1200 IPR011006 CheY-like superfamily YPDSF_1200 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPDSF_1200 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPDSF_1200 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPDSF_1200 IPR003594 Histidine kinase/HSP90-like ATPase YPDSF_1200 IPR035965 PAS domain superfamily YPDSF_1200 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPDSF_1200 IPR001789 Signal transduction response regulator, receiver domain YPDSF_1200 IPR036641 HPT domain superfamily YPDSF_1200 IPR000014 PAS domain YPDSF_1200 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_1200 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPDSF_1202 IPR013783 Immunoglobulin-like fold YPDSF_1202 IPR008962 PapD-like superfamily YPDSF_1202 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPDSF_1202 IPR001829 Pili assembly chaperone, bacterial YPDSF_1202 IPR016148 Pili assembly chaperone, C-terminal YPDSF_1202 IPR018046 Pili assembly chaperone, conserved site YPDSF_1202 IPR016147 Pili assembly chaperone, N-terminal YPDSF_1203 IPR037224 PapC, N-terminal domain superfamily YPDSF_1203 IPR025949 PapC-like, C-terminal domain YPDSF_1203 IPR042186 Outer membrane usher protein FimD, plug domain YPDSF_1203 IPR025885 PapC, N-terminal domain YPDSF_1203 IPR018030 Fimbrial membrane usher, conserved site YPDSF_1203 IPR000015 Outer membrane usher protein YPDSF_1205 IPR016147 Pili assembly chaperone, N-terminal YPDSF_1205 IPR016148 Pili assembly chaperone, C-terminal YPDSF_1205 IPR001829 Pili assembly chaperone, bacterial YPDSF_1205 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPDSF_1205 IPR008962 PapD-like superfamily YPDSF_1205 IPR013783 Immunoglobulin-like fold YPDSF_1205 IPR018046 Pili assembly chaperone, conserved site YPDSF_1206 IPR001207 Transposase, mutator type YPDSF_1208 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPDSF_1208 IPR010998 Integrase/recombinase, N-terminal YPDSF_1208 IPR025166 Integrase, DNA-binding domain YPDSF_1208 IPR002104 Integrase, catalytic domain YPDSF_1208 IPR013762 Integrase-like, catalytic domain superfamily YPDSF_1208 IPR038488 Integrase, DNA-binding domain superfamily YPDSF_1209 IPR019999 Anthranilate synthase component I-like YPDSF_1209 IPR005801 ADC synthase YPDSF_1209 IPR015890 Chorismate-utilising enzyme, C-terminal YPDSF_1209 IPR019996 Salicylate synthase YPDSF_1210 IPR011701 Major facilitator superfamily YPDSF_1210 IPR036259 MFS transporter superfamily YPDSF_1210 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 YPDSF_1211 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPDSF_1211 IPR003439 ABC transporter-like YPDSF_1211 IPR017871 ABC transporter, conserved site YPDSF_1211 IPR011527 ABC transporter type 1, transmembrane domain YPDSF_1211 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1211 IPR039421 Type I protein exporter YPDSF_1211 IPR003593 AAA+ ATPase domain YPDSF_1211 IPR011917 ABC transporter, lipid A export, MsbA YPDSF_1212 IPR003593 AAA+ ATPase domain YPDSF_1212 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPDSF_1212 IPR011527 ABC transporter type 1, transmembrane domain YPDSF_1212 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPDSF_1212 IPR003439 ABC transporter-like YPDSF_1212 IPR017871 ABC transporter, conserved site YPDSF_1212 IPR007037 Siderophore-interacting protein, C-terminal domain YPDSF_1212 IPR017938 Riboflavin synthase-like beta-barrel YPDSF_1212 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1212 IPR013113 FAD-binding 9, siderophore-interacting YPDSF_1212 IPR017927 FAD-binding domain, ferredoxin reductase-type YPDSF_1214 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_1214 IPR020845 AMP-binding, conserved site YPDSF_1214 IPR010071 Amino acid adenylation domain YPDSF_1214 IPR036736 ACP-like superfamily YPDSF_1214 IPR000873 AMP-dependent synthetase/ligase YPDSF_1214 IPR042099 AMP-dependent synthetase-like superfamily YPDSF_1214 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YPDSF_1214 IPR001242 Condensation domain YPDSF_1214 IPR020806 Polyketide synthase, phosphopantetheine-binding domain YPDSF_1214 IPR009081 Phosphopantetheine binding ACP domain YPDSF_1214 IPR013217 Methyltransferase type 12 YPDSF_1214 IPR006162 Phosphopantetheine attachment site YPDSF_1215 IPR014031 Beta-ketoacyl synthase, C-terminal YPDSF_1215 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPDSF_1215 IPR020806 Polyketide synthase, phosphopantetheine-binding domain YPDSF_1215 IPR001227 Acyl transferase domain superfamily YPDSF_1215 IPR036736 ACP-like superfamily YPDSF_1215 IPR009081 Phosphopantetheine binding ACP domain YPDSF_1215 IPR014043 Acyl transferase YPDSF_1215 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPDSF_1215 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YPDSF_1215 IPR001242 Condensation domain YPDSF_1215 IPR014030 Beta-ketoacyl synthase, N-terminal YPDSF_1215 IPR032821 Ketoacyl-synthetase, C-terminal extension YPDSF_1215 IPR018201 Beta-ketoacyl synthase, active site YPDSF_1215 IPR016039 Thiolase-like YPDSF_1215 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YPDSF_1217 IPR029058 Alpha/Beta hydrolase fold YPDSF_1217 IPR001031 Thioesterase YPDSF_1217 IPR020802 Polyketide synthase, thioesterase domain YPDSF_1217 IPR012223 Thioesterase type II, NRPS/PKS/S-FAS YPDSF_1218 IPR011963 2,3-dihydroxybenzoate-AMP ligase YPDSF_1218 IPR020845 AMP-binding, conserved site YPDSF_1218 IPR000873 AMP-dependent synthetase/ligase YPDSF_1218 IPR025110 AMP-binding enzyme, C-terminal domain YPDSF_1219 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPDSF_1219 IPR010105 TonB-dependent siderophore receptor YPDSF_1219 IPR039426 Vitamin B12 transporter BtuB-like YPDSF_1219 IPR000531 TonB-dependent receptor-like, beta-barrel YPDSF_1219 IPR012910 TonB-dependent receptor, plug domain YPDSF_1226 IPR002611 IstB-like ATP-binding protein YPDSF_1226 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_1226 IPR001270 ClpA/B family YPDSF_1226 IPR003593 AAA+ ATPase domain YPDSF_1226 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1227 IPR012337 Ribonuclease H-like superfamily YPDSF_1227 IPR017894 HTH domain, IS21 transposase-type YPDSF_1227 IPR001584 Integrase, catalytic core YPDSF_1227 IPR006120 Resolvase, HTH domain YPDSF_1227 IPR036397 Ribonuclease H superfamily YPDSF_1231 IPR015855 ABC transporter, maltose/maltodextrin import, MalK YPDSF_1231 IPR013611 Transport-associated OB, type 2 YPDSF_1231 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1231 IPR008995 Molybdate/tungstate binding, C-terminal YPDSF_1231 IPR017871 ABC transporter, conserved site YPDSF_1231 IPR003439 ABC transporter-like YPDSF_1231 IPR003593 AAA+ ATPase domain YPDSF_1232 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_1232 IPR035906 MetI-like superfamily YPDSF_1233 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_1233 IPR035906 MetI-like superfamily YPDSF_1234 IPR006061 Solute-binding family 1, conserved site YPDSF_1234 IPR006059 Bacterial extracellular solute-binding protein YPDSF_1235 IPR004104 Oxidoreductase, C-terminal YPDSF_1235 IPR023794 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase YPDSF_1235 IPR000683 Oxidoreductase, N-terminal YPDSF_1235 IPR036291 NAD(P)-binding domain superfamily YPDSF_1242 IPR001207 Transposase, mutator type YPDSF_1243 IPR001207 Transposase, mutator type YPDSF_1255 IPR008514 Type VI secretion system effector, Hcp YPDSF_1255 IPR036624 Hcp1-like superfamily YPDSF_1259 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YPDSF_1259 IPR000462 CDP-alcohol phosphatidyltransferase YPDSF_1259 IPR023762 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, bacterial YPDSF_1260 IPR000305 GIY-YIG endonuclease YPDSF_1260 IPR035901 GIY-YIG endonuclease superfamily YPDSF_1260 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 YPDSF_1260 IPR001943 UVR domain YPDSF_1260 IPR010994 RuvA domain 2-like YPDSF_1260 IPR036876 UVR domain superfamily YPDSF_1260 IPR004791 UvrABC system, subunit C YPDSF_1260 IPR001162 UvrC family homology region YPDSF_1260 IPR038476 UvrC homology region 2 superfamily YPDSF_1261 IPR016032 Signal transduction response regulator, C-terminal effector YPDSF_1261 IPR001789 Signal transduction response regulator, receiver domain YPDSF_1261 IPR000792 Transcription regulator LuxR, C-terminal YPDSF_1261 IPR011006 CheY-like superfamily YPDSF_1263 IPR009707 Membrane protein GlpM/YdgC YPDSF_1265 IPR027385 Outer membrane protein beta-barrel domain YPDSF_1265 IPR000758 Virulence-related outer membrane protein YPDSF_1265 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPDSF_1266 IPR004841 Amino acid permease/ SLC12A domain YPDSF_1266 IPR004840 Amino acid permease, conserved site YPDSF_1267 IPR019936 Mutatrotase, YjhT-like YPDSF_1267 IPR006652 Kelch repeat type 1 YPDSF_1267 IPR015915 Kelch-type beta propeller YPDSF_1268 IPR029039 Flavoprotein-like superfamily YPDSF_1268 IPR037513 NAD(P)H dehydrogenase (quinone), prokaryotic YPDSF_1268 IPR005025 NADPH-dependent FMN reductase-like YPDSF_1268 IPR010089 Flavoprotein WrbA-like YPDSF_1268 IPR008254 Flavodoxin/nitric oxide synthase YPDSF_1269 IPR006313 Deferrochelatase/peroxidase EfeB YPDSF_1269 IPR006314 Dyp-type peroxidase YPDSF_1269 IPR006311 Twin-arginine translocation pathway, signal sequence YPDSF_1269 IPR011008 Dimeric alpha-beta barrel YPDSF_1270 IPR038352 Imelysin-like domain superfamily YPDSF_1270 IPR034981 EfeO/Algp7, imelysin-like domain YPDSF_1270 IPR018976 Imelysin-like domain YPDSF_1270 IPR028096 EfeO-type cupredoxin-like domain YPDSF_1270 IPR008972 Cupredoxin YPDSF_1271 IPR004923 Iron permease FTR1/Fip1/EfeU YPDSF_1272 IPR011851 Sodium/proline symporter YPDSF_1272 IPR001734 Sodium/solute symporter YPDSF_1272 IPR018212 Sodium/solute symporter, conserved site YPDSF_1272 IPR038377 Sodium/glucose symporter superfamily YPDSF_1274 IPR016161 Aldehyde/histidinol dehydrogenase YPDSF_1274 IPR016163 Aldehyde dehydrogenase, C-terminal YPDSF_1274 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPDSF_1274 IPR016162 Aldehyde dehydrogenase, N-terminal YPDSF_1274 IPR016160 Aldehyde dehydrogenase, cysteine active site YPDSF_1274 IPR013321 Arc-type ribbon-helix-helix YPDSF_1274 IPR010985 Ribbon-helix-helix YPDSF_1274 IPR025703 Bifunctional protein PutA YPDSF_1274 IPR002872 Proline dehydrogenase domain YPDSF_1274 IPR024082 Proline dehydrogenase PutA, domain II YPDSF_1274 IPR024089 Proline dehydrogenase PutA, domain I/II YPDSF_1274 IPR024090 Proline dehydrogenase PutA, domain I YPDSF_1274 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 YPDSF_1274 IPR015590 Aldehyde dehydrogenase domain YPDSF_1274 IPR029041 FAD-linked oxidoreductase-like YPDSF_1274 IPR041349 Proline utilization A proline dehydrogenase N-terminal domain YPDSF_1281 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase YPDSF_1281 IPR001926 Pyridoxal-phosphate dependent enzyme YPDSF_1281 IPR023702 D-cysteine desulphhydrase, bacterial YPDSF_1281 IPR005966 D-cysteine desulfhydrase YPDSF_1281 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPDSF_1282 IPR004107 Integrase, SAM-like, N-terminal YPDSF_1282 IPR022523 Flagellar regulator, FliZ YPDSF_1283 IPR000943 RNA polymerase sigma-70 YPDSF_1283 IPR007624 RNA polymerase sigma-70 region 3 YPDSF_1283 IPR028617 RNA polymerase sigma factor FliA YPDSF_1283 IPR013324 RNA polymerase sigma factor, region 3/4-like YPDSF_1283 IPR012845 RNA polymerase sigma factor, FliA/WhiG YPDSF_1283 IPR007630 RNA polymerase sigma-70 region 4 YPDSF_1283 IPR007627 RNA polymerase sigma-70 region 2 YPDSF_1283 IPR013325 RNA polymerase sigma factor, region 2 YPDSF_1283 IPR014284 RNA polymerase sigma-70 like domain YPDSF_1284 IPR014981 Flagellin D3 YPDSF_1284 IPR001029 Flagellin, D0/D1 domain YPDSF_1284 IPR001492 Flagellin YPDSF_1285 IPR040026 Flagellar hook-associated protein 2 YPDSF_1285 IPR003481 Flagellar hook-associated protein 2, N-terminal YPDSF_1285 IPR010809 Flagellar hook-associated protein 2, C-terminal YPDSF_1285 IPR010810 Flagellin hook, IN motif YPDSF_1286 IPR036584 Flagellar protein FliS superfamily YPDSF_1286 IPR003713 Flagellar protein FliS YPDSF_1287 IPR008622 Flagellar protein FliT YPDSF_1288 IPR018060 DNA binding HTH domain, AraC-type YPDSF_1288 IPR020449 Transcription regulator HTH, AraC- type YPDSF_1288 IPR018062 HTH domain AraC-type, conserved site YPDSF_1288 IPR009057 Homeobox-like domain superfamily YPDSF_1289 IPR006675 HDIG domain YPDSF_1289 IPR037522 HD-GYP domain YPDSF_1289 IPR003607 HD/PDEase domain YPDSF_1289 IPR006674 HD domain YPDSF_1290 IPR011257 DNA glycosylase YPDSF_1290 IPR003265 HhH-GPD domain YPDSF_1293 IPR001624 Flagellar hook-basal body complex protein FliE YPDSF_1294 IPR013556 Flagellar M-ring C-terminal YPDSF_1294 IPR000067 Flagellar M-ring protein FliF YPDSF_1294 IPR006182 Secretory protein YscJ/FliF YPDSF_1295 IPR011002 Flagellar motor switch protein FliG, alpha-helical YPDSF_1295 IPR032779 Flagellar motor switch protein FliG, middle domain YPDSF_1295 IPR028263 Flagellar motor switch protein FliG, N-terminal domain YPDSF_1295 IPR000090 Flagellar motor switch protein FliG YPDSF_1295 IPR023087 Flagellar motor switch protein FliG, C-terminal YPDSF_1296 IPR000563 Flagellar assembly protein FliH YPDSF_1296 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE YPDSF_1297 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPDSF_1297 IPR032463 ATPase, type III secretion system, FliI YPDSF_1297 IPR005714 ATPase, type III secretion system, FliI/YscN YPDSF_1297 IPR020005 Flagellar export ATPase FliI, clade 1 YPDSF_1297 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1297 IPR040627 T3SS EscN ATPase, C-terminal YPDSF_1297 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPDSF_1297 IPR003593 AAA+ ATPase domain YPDSF_1298 IPR018006 Flagellar FliJ, proteobacteria YPDSF_1298 IPR012823 Flagellar export FliJ YPDSF_1299 IPR001635 Flagellar hook-length control protein FliK YPDSF_1299 IPR021136 Flagellar hook-length control protein-like, C-terminal YPDSF_1299 IPR038610 FliK-like, C-terminal domain superfamily YPDSF_1300 IPR005503 Flagellar basal body-associated protein FliL YPDSF_1301 IPR001543 Surface presentation of antigen (SpoA) YPDSF_1301 IPR001689 Flagellar motor switch protein FliM YPDSF_1301 IPR028976 CheC-like superfamily YPDSF_1301 IPR036429 SpoA-like superfamily YPDSF_1302 IPR036429 SpoA-like superfamily YPDSF_1302 IPR001543 Surface presentation of antigen (SpoA) YPDSF_1302 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb YPDSF_1302 IPR031576 Flagellar motor switch protein FliN, N-terminal YPDSF_1302 IPR012826 Flagellar motor switch FliN YPDSF_1303 IPR022781 Flagellar biosynthesis protein, FliO YPDSF_1304 IPR005837 Flagellar transport protein FliP YPDSF_1304 IPR005838 Type III secretion system inner membrane P protein YPDSF_1305 IPR002191 Bacterial export protein family 3 YPDSF_1305 IPR006305 Flagellar biosynthesis protein FliQ YPDSF_1306 IPR006303 Flagellar biosynthesis protein FliR YPDSF_1306 IPR002010 Type III secretion system inner membrane R protein YPDSF_1308 IPR002139 Ribokinase/fructokinase YPDSF_1308 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPDSF_1308 IPR011611 Carbohydrate kinase PfkB YPDSF_1308 IPR029056 Ribokinase-like YPDSF_1308 IPR030877 Sulfofructose kinase YPDSF_1309 IPR001851 ABC transporter, permease YPDSF_1310 IPR003439 ABC transporter-like YPDSF_1310 IPR003593 AAA+ ATPase domain YPDSF_1310 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1310 IPR017871 ABC transporter, conserved site YPDSF_1310 IPR015861 ABC transporter, ribose import, RbsA YPDSF_1311 IPR028082 Periplasmic binding protein-like I YPDSF_1311 IPR030159 Autoinducer 2 ABC transporter, substrate-binding protein LsrB YPDSF_1311 IPR025997 Periplasmic binding protein YPDSF_1312 IPR001851 ABC transporter, permease YPDSF_1313 IPR036291 NAD(P)-binding domain superfamily YPDSF_1313 IPR013454 Bifunctional rhamnulose-1-phosphate aldolase/alcohol dehydrogenase YPDSF_1313 IPR001303 Class II aldolase/adducin N-terminal YPDSF_1313 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPDSF_1313 IPR002347 Short-chain dehydrogenase/reductase SDR YPDSF_1314 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_1314 IPR037171 NagB/RpiA transferase-like YPDSF_1314 IPR013324 RNA polymerase sigma factor, region 3/4-like YPDSF_1314 IPR007324 Sugar-binding domain, putative YPDSF_1315 IPR013384 Flagellar hook-associated protein 3 YPDSF_1315 IPR001029 Flagellin, D0/D1 domain YPDSF_1316 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPDSF_1316 IPR001444 Flagellar basal body rod protein, N-terminal YPDSF_1316 IPR002371 Flagellar hook-associated protein 1 YPDSF_1317 IPR019301 Flagellar protein FlgJ, N-terminal YPDSF_1317 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain YPDSF_1317 IPR013377 Peptidoglycan hydrolase FlgJ YPDSF_1318 IPR001782 Flagellar P-ring protein YPDSF_1319 IPR000527 Flagellar L-ring protein YPDSF_1320 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPDSF_1320 IPR012834 Flagellar basal-body rod FlgG YPDSF_1320 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPDSF_1320 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPDSF_1320 IPR019776 Flagellar basal body rod protein, conserved site YPDSF_1320 IPR001444 Flagellar basal body rod protein, N-terminal YPDSF_1321 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPDSF_1321 IPR001444 Flagellar basal body rod protein, N-terminal YPDSF_1321 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPDSF_1321 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPDSF_1321 IPR019776 Flagellar basal body rod protein, conserved site YPDSF_1322 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPDSF_1322 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPDSF_1322 IPR019776 Flagellar basal body rod protein, conserved site YPDSF_1322 IPR011491 Flagellar hook protein FlgE YPDSF_1322 IPR001444 Flagellar basal body rod protein, N-terminal YPDSF_1322 IPR037058 Flagellar hook protein FlgE superfamily YPDSF_1322 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPDSF_1323 IPR025963 FlgD Tudor-like domain YPDSF_1323 IPR005648 Flagellar hook capping protein YPDSF_1323 IPR025965 FlgD Ig-like domain YPDSF_1324 IPR001444 Flagellar basal body rod protein, N-terminal YPDSF_1324 IPR006299 Flagellar basal-body rod protein FlgC YPDSF_1324 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPDSF_1324 IPR019776 Flagellar basal body rod protein, conserved site YPDSF_1325 IPR019776 Flagellar basal body rod protein, conserved site YPDSF_1325 IPR001444 Flagellar basal body rod protein, N-terminal YPDSF_1325 IPR006300 Flagellar basal-body rod protein FlgB YPDSF_1326 IPR039246 Flagellar protein FlgA YPDSF_1326 IPR041231 FlgA, N-terminal YPDSF_1326 IPR013974 SAF domain YPDSF_1326 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal YPDSF_1327 IPR007412 Anti-sigma-28 factor, FlgM YPDSF_1327 IPR031316 Anti-sigma-28 factor FlgM, C-terminal YPDSF_1327 IPR035890 Anti-sigma-28 factor FlgM superfamily YPDSF_1328 IPR036679 FlgN-like superfamily YPDSF_1328 IPR007809 FlgN-like protein YPDSF_1329 IPR015217 Invasin, domain 3 YPDSF_1329 IPR008964 Invasin/intimin cell-adhesion fragments YPDSF_1329 IPR013117 Intimin, C-terminal YPDSF_1329 IPR003535 Intimin/invasin bacterial adhesion mediator protein YPDSF_1329 IPR016187 C-type lectin fold YPDSF_1329 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPDSF_1329 IPR013783 Immunoglobulin-like fold YPDSF_1329 IPR038177 Inverse autotransporter, beta-domain superfamily YPDSF_1329 IPR016186 C-type lectin-like/link domain superfamily YPDSF_1329 IPR024519 Inverse autotransporter, beta-domain YPDSF_1331 IPR015217 Invasin, domain 3 YPDSF_1331 IPR024519 Inverse autotransporter, beta-domain YPDSF_1331 IPR013117 Intimin, C-terminal YPDSF_1331 IPR003535 Intimin/invasin bacterial adhesion mediator protein YPDSF_1331 IPR038177 Inverse autotransporter, beta-domain superfamily YPDSF_1331 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPDSF_1331 IPR016187 C-type lectin fold YPDSF_1331 IPR013783 Immunoglobulin-like fold YPDSF_1331 IPR016186 C-type lectin-like/link domain superfamily YPDSF_1331 IPR008964 Invasin/intimin cell-adhesion fragments YPDSF_1332 IPR009420 Flagellar protein FlhE YPDSF_1333 IPR006301 Flagellar biosynthesis protein FlhA YPDSF_1333 IPR025505 FHIPEP conserved site YPDSF_1333 IPR001712 Type III secretion system FHIPEP YPDSF_1333 IPR042193 FHIPEP, domain 3 YPDSF_1333 IPR042194 FHIPEP, domain 1 YPDSF_1333 IPR042196 FHIPEP, domain 4 YPDSF_1334 IPR006136 Flagellar biosynthetic protein FlhB YPDSF_1334 IPR006135 Type III secretion system substrate exporter YPDSF_1334 IPR029025 Type III secretion system substrate exporter, C-terminal YPDSF_1337 IPR019648 Protein of unknown function DUF2511 YPDSF_1339 IPR014756 Immunoglobulin E-set YPDSF_1339 IPR032694 Copper transport protein C/D YPDSF_1339 IPR007348 CopC domain YPDSF_1340 IPR012347 Ferritin-like YPDSF_1340 IPR009078 Ferritin-like superfamily YPDSF_1340 IPR009040 Ferritin-like diiron domain YPDSF_1340 IPR008331 Ferritin/DPS protein domain YPDSF_1340 IPR001519 Ferritin YPDSF_1340 IPR041719 Ferritin, prokaryotic-type YPDSF_1341 IPR009052 DNA polymerase III-theta, bacterial YPDSF_1341 IPR036745 DNA polymerase III-theta superfamily YPDSF_1342 IPR029058 Alpha/Beta hydrolase fold YPDSF_1342 IPR000073 Alpha/beta hydrolase fold-1 YPDSF_1342 IPR002410 Peptidase S33 YPDSF_1342 IPR005944 Proline iminopeptidase YPDSF_1343 IPR029058 Alpha/Beta hydrolase fold YPDSF_1343 IPR002471 Peptidase S9, serine active site YPDSF_1343 IPR023302 Peptidase S9A, N-terminal domain YPDSF_1343 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain YPDSF_1343 IPR002470 Peptidase S9A, prolyl oligopeptidase YPDSF_1344 IPR025603 YebF/Colicin-M immunity protein YPDSF_1344 IPR020236 Uncharacterised protein family YebF YPDSF_1344 IPR038703 YebF/Cmi superfamily YPDSF_1346 IPR009813 Uncharacterised protein family YebG YPDSF_1346 IPR038627 YebG-like superfamily YPDSF_1347 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1347 IPR014014 RNA helicase, DEAD-box type, Q motif YPDSF_1347 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPDSF_1347 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily YPDSF_1347 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain YPDSF_1347 IPR011545 DEAD/DEAH box helicase domain YPDSF_1347 IPR001650 Helicase, C-terminal YPDSF_1347 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPDSF_1347 IPR028619 ATP-dependent RNA helicase DbpA YPDSF_1348 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase YPDSF_1348 IPR011761 ATP-grasp fold YPDSF_1348 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YPDSF_1348 IPR013815 ATP-grasp fold, subdomain 1 YPDSF_1348 IPR016185 Pre-ATP-grasp domain superfamily YPDSF_1348 IPR011054 Rudiment single hybrid motif YPDSF_1349 IPR005371 Uncharacterised protein family UPF0181 YPDSF_1350 IPR005802 Aminodeoxychorismate synthase, component I YPDSF_1350 IPR005801 ADC synthase YPDSF_1350 IPR019999 Anthranilate synthase component I-like YPDSF_1350 IPR006805 Anthranilate synthase component I, N-terminal YPDSF_1350 IPR015890 Chorismate-utilising enzyme, C-terminal YPDSF_1351 IPR000059 NUDIX hydrolase, NudL, conserved site YPDSF_1351 IPR015797 NUDIX hydrolase-like domain superfamily YPDSF_1351 IPR000086 NUDIX hydrolase domain YPDSF_1351 IPR023735 Uncharacterised nudix hydrolase NudL YPDSF_1352 IPR005131 Serine dehydratase beta chain YPDSF_1352 IPR005130 Serine dehydratase-like, alpha subunit YPDSF_1352 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form YPDSF_1352 IPR029009 Allosteric substrate binding domain superfamily YPDSF_1353 IPR002563 Flavin reductase like domain YPDSF_1353 IPR012349 FMN-binding split barrel YPDSF_1353 IPR011982 4-hydroxyphenylacetate 3-monooxygenase, reductase component YPDSF_1354 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal YPDSF_1354 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily YPDSF_1354 IPR024677 4-HPA 3-monooxygenase large component/Pyoverdin chromophore biosynthetic protein YPDSF_1354 IPR004925 HpaB/PvcC/4-BUDH YPDSF_1354 IPR024719 HpaB/PvcC/4-BUDH C-terminal YPDSF_1354 IPR024674 HpaB/PvcC/4-BUDH N-terminal YPDSF_1354 IPR012688 4-HPA 3-monooxygenase large component, gammaproteobacteria YPDSF_1355 IPR036259 MFS transporter superfamily YPDSF_1355 IPR020846 Major facilitator superfamily domain YPDSF_1355 IPR011701 Major facilitator superfamily YPDSF_1356 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPDSF_1356 IPR005000 HpcH/HpaI aldolase/citrate lyase domain YPDSF_1356 IPR040442 Pyruvate kinase-like domain superfamily YPDSF_1356 IPR023701 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase, Enterobacteriales YPDSF_1356 IPR012689 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase YPDSF_1357 IPR011234 Fumarylacetoacetase-like, C-terminal YPDSF_1357 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily YPDSF_1357 IPR012690 2-oxo-hepta-4-ene-1,7-dioic acid hydratase YPDSF_1358 IPR014347 Tautomerase/MIF superfamily YPDSF_1358 IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase YPDSF_1359 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B YPDSF_1359 IPR011984 3,4-dihydroxyphenylacetate 2,3-dioxygenase YPDSF_1360 IPR016160 Aldehyde dehydrogenase, cysteine active site YPDSF_1360 IPR016161 Aldehyde/histidinol dehydrogenase YPDSF_1360 IPR016163 Aldehyde dehydrogenase, C-terminal YPDSF_1360 IPR011985 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase YPDSF_1360 IPR015590 Aldehyde dehydrogenase domain YPDSF_1360 IPR016162 Aldehyde dehydrogenase, N-terminal YPDSF_1360 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPDSF_1361 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily YPDSF_1361 IPR012686 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit YPDSF_1361 IPR011234 Fumarylacetoacetase-like, C-terminal YPDSF_1361 IPR012684 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit YPDSF_1362 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily YPDSF_1362 IPR011234 Fumarylacetoacetase-like, C-terminal YPDSF_1362 IPR012686 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit YPDSF_1362 IPR012684 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit YPDSF_1363 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_1363 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_1363 IPR023187 Transcriptional regulator MarR-type, conserved site YPDSF_1363 IPR000835 MarR-type HTH domain YPDSF_1363 IPR012712 HTH-type transcriptional regulator HpaR/FarR YPDSF_1366 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup YPDSF_1366 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily YPDSF_1366 IPR004720 Phosphotransferase system, sorbose subfamily IIB component YPDSF_1366 IPR033887 PTS system mannose/sorbose specific IIA subunit YPDSF_1366 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily YPDSF_1366 IPR004701 Phosphotransferase system, mannose-type IIA component YPDSF_1366 IPR013789 Phosphotransferase system, mannose family IIA component YPDSF_1367 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit YPDSF_1368 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component YPDSF_1369 IPR009328 Protein of unknown function DUF986 YPDSF_1370 IPR022929 Putative manganese efflux pump MntP YPDSF_1370 IPR003810 Putative manganese efflux pump YPDSF_1371 IPR000531 TonB-dependent receptor-like, beta-barrel YPDSF_1371 IPR039423 TonB-dependent receptor-like YPDSF_1371 IPR030149 TonB-dependent siderophore receptor FcuA/FatA YPDSF_1371 IPR012910 TonB-dependent receptor, plug domain YPDSF_1371 IPR010105 TonB-dependent siderophore receptor YPDSF_1371 IPR037066 TonB-dependent receptor, plug domain superfamily YPDSF_1371 IPR010917 TonB-dependent receptor, conserved site YPDSF_1371 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPDSF_1371 IPR010916 TonB box, conserved site YPDSF_1373 IPR000014 PAS domain YPDSF_1373 IPR001633 EAL domain YPDSF_1373 IPR035919 EAL domain superfamily YPDSF_1373 IPR000160 GGDEF domain YPDSF_1373 IPR007895 MASE1 YPDSF_1373 IPR029787 Nucleotide cyclase YPDSF_1373 IPR013655 PAS fold-3 YPDSF_1373 IPR000700 PAS-associated, C-terminal YPDSF_1373 IPR035965 PAS domain superfamily YPDSF_1373 IPR013656 PAS fold-4 YPDSF_1373 IPR001610 PAC motif YPDSF_1375 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_1375 IPR025714 Methyltransferase domain YPDSF_1375 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted YPDSF_1377 IPR012340 Nucleic acid-binding, OB-fold YPDSF_1377 IPR012156 Cold shock, CspA YPDSF_1377 IPR011129 Cold shock domain YPDSF_1377 IPR019844 Cold-shock (CSD) domain YPDSF_1377 IPR002059 Cold-shock protein, DNA-binding YPDSF_1378 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPDSF_1378 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP YPDSF_1379 IPR004840 Amino acid permease, conserved site YPDSF_1379 IPR004841 Amino acid permease/ SLC12A domain YPDSF_1382 IPR025594 YebO-like protein YPDSF_1383 IPR025611 YobH-like protein YPDSF_1384 IPR020262 Uncharacterised protein family YecJ YPDSF_1385 IPR020449 Transcription regulator HTH, AraC- type YPDSF_1385 IPR018060 DNA binding HTH domain, AraC-type YPDSF_1385 IPR018062 HTH domain AraC-type, conserved site YPDSF_1385 IPR009057 Homeobox-like domain superfamily YPDSF_1387 IPR039421 Type I protein exporter YPDSF_1387 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1387 IPR017871 ABC transporter, conserved site YPDSF_1387 IPR003439 ABC transporter-like YPDSF_1387 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPDSF_1387 IPR003593 AAA+ ATPase domain YPDSF_1387 IPR011527 ABC transporter type 1, transmembrane domain YPDSF_1388 IPR036515 Transposase IS200-like superfamily YPDSF_1388 IPR002686 Transposase IS200-like YPDSF_1391 IPR042252 MtfA, N-terminal YPDSF_1391 IPR010384 MtfA family YPDSF_1391 IPR024079 Metallopeptidase, catalytic domain superfamily YPDSF_1392 IPR028082 Periplasmic binding protein-like I YPDSF_1392 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPDSF_1392 IPR000843 LacI-type HTH domain YPDSF_1392 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPDSF_1393 IPR036259 MFS transporter superfamily YPDSF_1393 IPR020846 Major facilitator superfamily domain YPDSF_1393 IPR018457 LacY/RafB permease family, conserved site YPDSF_1393 IPR000576 LacY/RafB permease family YPDSF_1394 IPR017853 Glycoside hydrolase superfamily YPDSF_1394 IPR031704 Glycosyl hydrolase family 36, N-terminal YPDSF_1394 IPR002252 Glycoside hydrolase family 36 YPDSF_1394 IPR000111 Glycoside hydrolase family 27/36, conserved site YPDSF_1394 IPR038417 Alpha-galactosidase, N-terminal domain superfamily YPDSF_1394 IPR013785 Aldolase-type TIM barrel YPDSF_1394 IPR031705 Glycosyl hydrolase family 36, C-terminal YPDSF_1396 IPR037143 4'-phosphopantetheinyl transferase domain superfamily YPDSF_1396 IPR041354 4'-phosphopantetheinyl transferase, N-terminal domain YPDSF_1396 IPR008278 4'-phosphopantetheinyl transferase domain YPDSF_1396 IPR003542 Enterobactin synthetase-like, component D YPDSF_1397 IPR038404 TRAP transporter solute receptor DctP superfamily YPDSF_1397 IPR018389 TRAP transporter solute receptor DctP/TeaA YPDSF_1397 IPR004682 TRAP transporter solute receptor, DctP family YPDSF_1399 IPR004681 TRAP transporter large membrane protein DctM YPDSF_1399 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit YPDSF_1400 IPR001789 Signal transduction response regulator, receiver domain YPDSF_1400 IPR011006 CheY-like superfamily YPDSF_1400 IPR016032 Signal transduction response regulator, C-terminal effector YPDSF_1400 IPR000792 Transcription regulator LuxR, C-terminal YPDSF_1401 IPR018636 Protein of unknown function DUF2058 YPDSF_1403 IPR037950 Peptidoglycan deacetylase PgdA-like YPDSF_1403 IPR002509 NodB homology domain YPDSF_1403 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPDSF_1405 IPR002528 Multi antimicrobial extrusion protein YPDSF_1406 IPR001518 Argininosuccinate synthase YPDSF_1406 IPR023437 Argininosuccinate synthase, type 2 subfamily YPDSF_1406 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail YPDSF_1406 IPR018223 Argininosuccinate synthase, conserved site YPDSF_1406 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body YPDSF_1406 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_1407 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent YPDSF_1407 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site YPDSF_1407 IPR000262 FMN-dependent dehydrogenase YPDSF_1407 IPR037396 FMN hydroxy acid dehydrogenase domain YPDSF_1407 IPR013785 Aldolase-type TIM barrel YPDSF_1407 IPR020920 L-lactate dehydrogenase, bacterial YPDSF_1408 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal YPDSF_1408 IPR029017 Enolase-like, N-terminal YPDSF_1408 IPR036849 Enolase-like, C-terminal domain superfamily YPDSF_1408 IPR029065 Enolase C-terminal domain-like YPDSF_1408 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain YPDSF_1408 IPR034610 L-fuconate dehydratase YPDSF_1409 IPR011234 Fumarylacetoacetase-like, C-terminal YPDSF_1409 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily YPDSF_1410 IPR036291 NAD(P)-binding domain superfamily YPDSF_1410 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPDSF_1410 IPR002347 Short-chain dehydrogenase/reductase SDR YPDSF_1411 IPR007263 Protein of unknown function DUF393 YPDSF_1412 IPR020846 Major facilitator superfamily domain YPDSF_1412 IPR011701 Major facilitator superfamily YPDSF_1412 IPR036259 MFS transporter superfamily YPDSF_1414 IPR038177 Inverse autotransporter, beta-domain superfamily YPDSF_1414 IPR003535 Intimin/invasin bacterial adhesion mediator protein YPDSF_1414 IPR008964 Invasin/intimin cell-adhesion fragments YPDSF_1414 IPR015217 Invasin, domain 3 YPDSF_1414 IPR022409 PKD/Chitinase domain YPDSF_1414 IPR018392 LysM domain YPDSF_1414 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPDSF_1414 IPR013783 Immunoglobulin-like fold YPDSF_1414 IPR024519 Inverse autotransporter, beta-domain YPDSF_1415 IPR001207 Transposase, mutator type YPDSF_1416 IPR007458 Protein of unknown function DUF496 YPDSF_1418 IPR036397 Ribonuclease H superfamily YPDSF_1418 IPR012337 Ribonuclease H-like superfamily YPDSF_1418 IPR013520 Exonuclease, RNase T/DNA polymerase III YPDSF_1418 IPR013620 Exodeoxyribonuclease I, C-terminal YPDSF_1418 IPR034747 Exonuclease I, SH3-like domain YPDSF_1418 IPR034748 Exonuclease I, C-terminal alpha-helical domain YPDSF_1418 IPR023607 Exodeoxyribonuclease I YPDSF_1418 IPR038649 Exonuclease I, SH3-like domain superfamily YPDSF_1419 IPR002293 Amino acid/polyamine transporter I YPDSF_1420 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA YPDSF_1420 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YPDSF_1420 IPR016205 Glycerol dehydrogenase YPDSF_1423 IPR017871 ABC transporter, conserved site YPDSF_1423 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1423 IPR015861 ABC transporter, ribose import, RbsA YPDSF_1423 IPR003439 ABC transporter-like YPDSF_1423 IPR003593 AAA+ ATPase domain YPDSF_1424 IPR001851 ABC transporter, permease YPDSF_1426 IPR036291 NAD(P)-binding domain superfamily YPDSF_1426 IPR001509 NAD-dependent epimerase/dehydratase YPDSF_1427 IPR001348 ATP phosphoribosyltransferase HisG YPDSF_1427 IPR018198 ATP phosphoribosyltransferase, conserved site YPDSF_1427 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPDSF_1427 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPDSF_1427 IPR020621 ATP phosphoribosyltransferase HisG, long form YPDSF_1427 IPR013820 ATP phosphoribosyltransferase, catalytic domain YPDSF_1427 IPR013115 Histidine biosynthesis HisG, C-terminal YPDSF_1428 IPR012131 Histidinol dehydrogenase YPDSF_1428 IPR022695 Histidinol dehydrogenase, monofunctional YPDSF_1428 IPR001692 Histidinol dehydrogenase, conserved site YPDSF_1428 IPR016161 Aldehyde/histidinol dehydrogenase YPDSF_1429 IPR004839 Aminotransferase, class I/classII YPDSF_1429 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site YPDSF_1429 IPR005861 Histidinol-phosphate aminotransferase family YPDSF_1429 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_1429 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_1429 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_1430 IPR020566 Histidine biosynthesis bifunctional protein HisB YPDSF_1430 IPR005954 Histidinol-phosphatase YPDSF_1430 IPR006543 Histidinol-phosphate phosphatase YPDSF_1430 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily YPDSF_1430 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site YPDSF_1430 IPR000807 Imidazoleglycerol-phosphate dehydratase YPDSF_1430 IPR023214 HAD superfamily YPDSF_1430 IPR006549 HAD-superfamily hydrolase,subfamily IIIA YPDSF_1430 IPR020568 Ribosomal protein S5 domain 2-type fold YPDSF_1430 IPR036412 HAD-like superfamily YPDSF_1431 IPR029062 Class I glutamine amidotransferase-like YPDSF_1431 IPR017926 Glutamine amidotransferase YPDSF_1431 IPR010139 Imidazole glycerol phosphate synthase, subunit H YPDSF_1432 IPR011060 Ribulose-phosphate binding barrel YPDSF_1432 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YPDSF_1432 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA YPDSF_1432 IPR006062 Histidine biosynthesis YPDSF_1432 IPR013785 Aldolase-type TIM barrel YPDSF_1433 IPR006062 Histidine biosynthesis YPDSF_1433 IPR013785 Aldolase-type TIM barrel YPDSF_1433 IPR011060 Ribulose-phosphate binding barrel YPDSF_1433 IPR004651 Histidine biosynthesis, HisF YPDSF_1434 IPR023019 Histidine biosynthesis bifunctional protein HisIE YPDSF_1434 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase YPDSF_1434 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like YPDSF_1434 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain YPDSF_1434 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily YPDSF_1435 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating YPDSF_1435 IPR006114 6-phosphogluconate dehydrogenase, C-terminal YPDSF_1435 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPDSF_1435 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPDSF_1435 IPR006184 6-phosphogluconate-binding site YPDSF_1435 IPR006183 6-phosphogluconate dehydrogenase YPDSF_1435 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding YPDSF_1435 IPR036291 NAD(P)-binding domain superfamily YPDSF_1436 IPR005835 Nucleotidyl transferase domain YPDSF_1436 IPR029044 Nucleotide-diphospho-sugar transferases YPDSF_1436 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type YPDSF_1437 IPR029044 Nucleotide-diphospho-sugar transferases YPDSF_1437 IPR005835 Nucleotidyl transferase domain YPDSF_1437 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type YPDSF_1438 IPR022770 Ferric iron reductase FhuF domain YPDSF_1438 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPDSF_1438 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like YPDSF_1439 IPR011662 Secretin/TonB, short N-terminal domain YPDSF_1439 IPR037066 TonB-dependent receptor, plug domain superfamily YPDSF_1439 IPR012910 TonB-dependent receptor, plug domain YPDSF_1439 IPR000531 TonB-dependent receptor-like, beta-barrel YPDSF_1439 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPDSF_1439 IPR039423 TonB-dependent receptor-like YPDSF_1439 IPR010105 TonB-dependent siderophore receptor YPDSF_1439 IPR010917 TonB-dependent receptor, conserved site YPDSF_1440 IPR002491 ABC transporter periplasmic binding domain YPDSF_1441 IPR037294 ABC transporter, BtuC-like YPDSF_1441 IPR000522 ABC transporter, permease protein, BtuC-like YPDSF_1442 IPR000522 ABC transporter, permease protein, BtuC-like YPDSF_1442 IPR037294 ABC transporter, BtuC-like YPDSF_1443 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1443 IPR017871 ABC transporter, conserved site YPDSF_1443 IPR003439 ABC transporter-like YPDSF_1443 IPR003593 AAA+ ATPase domain YPDSF_1444 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like YPDSF_1444 IPR022770 Ferric iron reductase FhuF domain YPDSF_1444 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPDSF_1446 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_1446 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase YPDSF_1447 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_1447 IPR021115 Pyridoxal-phosphate binding site YPDSF_1447 IPR002129 Pyridoxal phosphate-dependent decarboxylase YPDSF_1447 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_1448 IPR022770 Ferric iron reductase FhuF domain YPDSF_1448 IPR008090 Ferric iron reductase YPDSF_1448 IPR024726 Ferric iron reductase, C-terminal YPDSF_1449 IPR036318 FAD-binding, type PCMH-like superfamily YPDSF_1449 IPR005496 Integral membrane protein TerC YPDSF_1449 IPR005170 Transporter-associated domain YPDSF_1449 IPR000644 CBS domain YPDSF_1449 IPR016169 FAD-binding, type PCMH, subdomain 2 YPDSF_1450 IPR007844 AsmA YPDSF_1451 IPR029054 dUTPase-like YPDSF_1451 IPR011962 dCTP deaminase YPDSF_1451 IPR036157 dUTPase-like superfamily YPDSF_1451 IPR033704 dUTPase, trimeric YPDSF_1452 IPR026008 Uridine kinase YPDSF_1452 IPR006083 Phosphoribulokinase/uridine kinase YPDSF_1452 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1452 IPR000764 Uridine kinase-like YPDSF_1453 IPR034904 Fe-S cluster assembly domain superfamily YPDSF_1453 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 YPDSF_1453 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1453 IPR000808 Mrp, conserved site YPDSF_1453 IPR019591 Mrp/NBP35 ATP-binding protein YPDSF_1454 IPR002547 tRNA-binding domain YPDSF_1454 IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain YPDSF_1454 IPR014758 Methionyl-tRNA synthetase YPDSF_1454 IPR015413 Methionyl/Leucyl tRNA synthetase YPDSF_1454 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_1454 IPR029038 Methionyl-tRNA synthetase, Zn-domain YPDSF_1454 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPDSF_1454 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YPDSF_1454 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal YPDSF_1454 IPR023458 Methionine-tRNA ligase, type 1 YPDSF_1454 IPR033911 Methioninyl-tRNA synthetase core domain YPDSF_1454 IPR012340 Nucleic acid-binding, OB-fold YPDSF_1455 IPR002686 Transposase IS200-like YPDSF_1455 IPR036515 Transposase IS200-like superfamily YPDSF_1459 IPR020846 Major facilitator superfamily domain YPDSF_1459 IPR036259 MFS transporter superfamily YPDSF_1459 IPR011701 Major facilitator superfamily YPDSF_1460 IPR005538 LrgA/CidA family YPDSF_1460 IPR022957 Uncharacterised protein family UPF0299 YPDSF_1461 IPR005261 Conserved hypothetical protein CHP00659 YPDSF_1461 IPR007300 CidB/LrgB family YPDSF_1462 IPR016193 Cytidine deaminase-like YPDSF_1462 IPR016192 APOBEC/CMP deaminase, zinc-binding YPDSF_1462 IPR006263 Cytidine deaminase, homodimeric YPDSF_1462 IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain YPDSF_1462 IPR020797 Cytidine deaminase, bacteria YPDSF_1462 IPR002125 Cytidine and deoxycytidylate deaminase domain YPDSF_1463 IPR023667 NAD-dependent malic enzyme, proteobacteria YPDSF_1463 IPR036291 NAD(P)-binding domain superfamily YPDSF_1463 IPR012301 Malic enzyme, N-terminal domain YPDSF_1463 IPR012302 Malic enzyme, NAD-binding YPDSF_1463 IPR001891 Malic oxidoreductase YPDSF_1463 IPR037062 Malic enzyme, N-terminal domain superfamily YPDSF_1463 IPR015884 Malic enzyme, conserved site YPDSF_1464 IPR023604 Uncharacterised protein family SanA YPDSF_1464 IPR003848 Domain of unknown function DUF218 YPDSF_1465 IPR001851 ABC transporter, permease YPDSF_1465 IPR030158 Galactoside transport system permease protein MglC YPDSF_1466 IPR001584 Integrase, catalytic core YPDSF_1466 IPR017894 HTH domain, IS21 transposase-type YPDSF_1466 IPR012337 Ribonuclease H-like superfamily YPDSF_1466 IPR036397 Ribonuclease H superfamily YPDSF_1466 IPR006120 Resolvase, HTH domain YPDSF_1467 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1467 IPR003593 AAA+ ATPase domain YPDSF_1467 IPR001270 ClpA/B family YPDSF_1467 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_1467 IPR002611 IstB-like ATP-binding protein YPDSF_1468 IPR001851 ABC transporter, permease YPDSF_1468 IPR030158 Galactoside transport system permease protein MglC YPDSF_1469 IPR003439 ABC transporter-like YPDSF_1469 IPR015862 ABC transporter, galactose import, MglA YPDSF_1469 IPR017871 ABC transporter, conserved site YPDSF_1469 IPR003593 AAA+ ATPase domain YPDSF_1469 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1470 IPR028082 Periplasmic binding protein-like I YPDSF_1470 IPR025997 Periplasmic binding protein YPDSF_1471 IPR007349 Domain of unknown function DUF418 YPDSF_1472 IPR001474 GTP cyclohydrolase I YPDSF_1472 IPR020602 GTP cyclohydrolase I domain YPDSF_1472 IPR018234 GTP cyclohydrolase I, conserved site YPDSF_1473 IPR010645 Uncharacterised MFS-type transporter YbfB YPDSF_1473 IPR036259 MFS transporter superfamily YPDSF_1474 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_1474 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_1474 IPR005119 LysR, substrate-binding YPDSF_1474 IPR000847 Transcription regulator HTH, LysR YPDSF_1475 IPR013154 Alcohol dehydrogenase, N-terminal YPDSF_1475 IPR036291 NAD(P)-binding domain superfamily YPDSF_1475 IPR020843 Polyketide synthase, enoylreductase domain YPDSF_1475 IPR014183 Alcohol dehydrogenase class III YPDSF_1475 IPR013149 Alcohol dehydrogenase, C-terminal YPDSF_1475 IPR011032 GroES-like superfamily YPDSF_1475 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site YPDSF_1476 IPR000801 Putative esterase YPDSF_1476 IPR029058 Alpha/Beta hydrolase fold YPDSF_1476 IPR014186 S-formylglutathione hydrolase YPDSF_1478 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YPDSF_1478 IPR022824 Multidrug resistance protein MdtA YPDSF_1478 IPR006143 RND efflux pump, membrane fusion protein YPDSF_1479 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1479 IPR017871 ABC transporter, conserved site YPDSF_1479 IPR003593 AAA+ ATPase domain YPDSF_1479 IPR003439 ABC transporter-like YPDSF_1481 IPR036135 MoeA, N-terminal and linker domain superfamily YPDSF_1481 IPR005110 MoeA, N-terminal and linker domain YPDSF_1481 IPR036688 MoeA, C-terminal, domain IV superfamily YPDSF_1481 IPR005111 MoeA, C-terminal, domain IV YPDSF_1481 IPR038987 Molybdopterin biosynthesis protein MoeA-like YPDSF_1481 IPR008284 Molybdenum cofactor biosynthesis, conserved site YPDSF_1481 IPR001453 MoaB/Mog domain YPDSF_1481 IPR036425 MoaB/Mog-like domain superfamily YPDSF_1482 IPR012730 Molybdopterin synthase sulfurylase MoeB YPDSF_1482 IPR000594 THIF-type NAD/FAD binding fold YPDSF_1482 IPR035985 Ubiquitin-activating enzyme YPDSF_1484 IPR003439 ABC transporter-like YPDSF_1484 IPR032781 ABC-transporter extension domain YPDSF_1484 IPR003593 AAA+ ATPase domain YPDSF_1484 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1496 IPR012337 Ribonuclease H-like superfamily YPDSF_1496 IPR025959 Winged helix-turn helix domain YPDSF_1496 IPR038717 Tc1-like transposase, DDE domain YPDSF_1496 IPR009057 Homeobox-like domain superfamily YPDSF_1497 IPR038717 Tc1-like transposase, DDE domain YPDSF_1497 IPR012337 Ribonuclease H-like superfamily YPDSF_1497 IPR025959 Winged helix-turn helix domain YPDSF_1497 IPR009057 Homeobox-like domain superfamily YPDSF_1498 IPR038717 Tc1-like transposase, DDE domain YPDSF_1498 IPR012337 Ribonuclease H-like superfamily YPDSF_1498 IPR009057 Homeobox-like domain superfamily YPDSF_1498 IPR025959 Winged helix-turn helix domain YPDSF_1504 IPR036628 Clp, N-terminal domain superfamily YPDSF_1504 IPR018368 ClpA/B, conserved site 1 YPDSF_1504 IPR019489 Clp ATPase, C-terminal YPDSF_1504 IPR017729 Type VI secretion system, ATPase ClpV1 YPDSF_1504 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1504 IPR003959 ATPase, AAA-type, core YPDSF_1504 IPR003593 AAA+ ATPase domain YPDSF_1504 IPR001270 ClpA/B family YPDSF_1504 IPR004176 Clp, N-terminal YPDSF_1504 IPR041546 ClpA/ClpB, AAA lid domain YPDSF_1507 IPR028974 TSP type-3 repeat YPDSF_1507 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPDSF_1507 IPR036737 OmpA-like domain superfamily YPDSF_1507 IPR006690 Outer membrane protein, OmpA-like, conserved site YPDSF_1507 IPR008722 Outer membrane porin F, N-terminal YPDSF_1507 IPR006665 OmpA-like domain YPDSF_1507 IPR006664 Outer membrane protein, bacterial YPDSF_1512 IPR001227 Acyl transferase domain superfamily YPDSF_1512 IPR014043 Acyl transferase YPDSF_1512 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPDSF_1512 IPR024925 Malonyl CoA-acyl carrier protein transacylase YPDSF_1512 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type YPDSF_1512 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YPDSF_1514 IPR036291 NAD(P)-binding domain superfamily YPDSF_1514 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPDSF_1514 IPR002347 Short-chain dehydrogenase/reductase SDR YPDSF_1515 IPR029045 ClpP/crotonase-like domain superfamily YPDSF_1515 IPR001753 Enoyl-CoA hydratase/isomerase YPDSF_1515 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site YPDSF_1517 IPR016039 Thiolase-like YPDSF_1517 IPR013746 Hydroxymethylglutaryl-coenzyme A synthase C-terminal domain YPDSF_1517 IPR013528 Hydroxymethylglutaryl-coenzyme A synthase, N-terminal YPDSF_1518 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPDSF_1518 IPR002347 Short-chain dehydrogenase/reductase SDR YPDSF_1518 IPR036291 NAD(P)-binding domain superfamily YPDSF_1518 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase YPDSF_1519 IPR014030 Beta-ketoacyl synthase, N-terminal YPDSF_1519 IPR016039 Thiolase-like YPDSF_1519 IPR018201 Beta-ketoacyl synthase, active site YPDSF_1519 IPR000794 Beta-ketoacyl synthase YPDSF_1519 IPR014031 Beta-ketoacyl synthase, C-terminal YPDSF_1519 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 YPDSF_1519 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPDSF_1520 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ YPDSF_1520 IPR029069 HotDog domain superfamily YPDSF_1520 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YPDSF_1522 IPR002347 Short-chain dehydrogenase/reductase SDR YPDSF_1522 IPR036291 NAD(P)-binding domain superfamily YPDSF_1522 IPR011294 3-hydroxybutyrate dehydrogenase YPDSF_1522 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPDSF_1523 IPR016167 FAD-binding, type PCMH, subdomain 1 YPDSF_1523 IPR036318 FAD-binding, type PCMH-like superfamily YPDSF_1523 IPR012951 Berberine/berberine-like YPDSF_1523 IPR016164 FAD-linked oxidase-like, C-terminal YPDSF_1523 IPR006093 Oxygen oxidoreductase covalent FAD-binding site YPDSF_1523 IPR006094 FAD linked oxidase, N-terminal YPDSF_1523 IPR016166 FAD-binding domain, PCMH-type YPDSF_1523 IPR016169 FAD-binding, type PCMH, subdomain 2 YPDSF_1526 IPR036397 Ribonuclease H superfamily YPDSF_1526 IPR012337 Ribonuclease H-like superfamily YPDSF_1526 IPR032874 DDE domain YPDSF_1526 IPR001584 Integrase, catalytic core YPDSF_1527 IPR007453 Sulphur transfer protein DsrC/TusE YPDSF_1527 IPR025526 DsrC-like domain superfamily YPDSF_1527 IPR042072 DsrC-like protein, C-terminal domain YPDSF_1528 IPR017968 Acylphosphatase, conserved site YPDSF_1528 IPR036046 Acylphosphatase-like domain superfamily YPDSF_1528 IPR001792 Acylphosphatase-like domain YPDSF_1528 IPR028627 Acylphosphatase, bacteria YPDSF_1528 IPR020456 Acylphosphatase YPDSF_1529 IPR015947 PUA-like superfamily YPDSF_1529 IPR041532 RlmI, PUA-like domain YPDSF_1529 IPR023542 rRNA large subunit methyltransferase I YPDSF_1529 IPR019614 S-adenosylmethionine-dependent methyltransferase YPDSF_1529 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_1529 IPR036974 PUA domain superfamily YPDSF_1529 IPR002478 PUA domain YPDSF_1530 IPR011722 Hemimethylated DNA-binding domain YPDSF_1530 IPR036623 Hemimethylated DNA-binding domain superfamily YPDSF_1530 IPR022866 Heat shock protein HspQ YPDSF_1531 IPR036291 NAD(P)-binding domain superfamily YPDSF_1531 IPR003781 CoA-binding YPDSF_1532 IPR018635 Uncharacterised protein family UPF0319 YPDSF_1533 IPR018148 Methylglyoxal synthase, active site YPDSF_1533 IPR011607 Methylglyoxal synthase-like domain YPDSF_1533 IPR036914 Methylglyoxal synthase-like domain superfamily YPDSF_1533 IPR004363 Methylglyoxal synthase YPDSF_1534 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1534 IPR022161 DNA helicase IV, N-terminal domain YPDSF_1534 IPR000212 DNA helicase, UvrD/REP type YPDSF_1534 IPR014017 UvrD-like DNA helicase, C-terminal YPDSF_1534 IPR034739 UvrD/AddA helicase, N-terminal YPDSF_1534 IPR014016 UvrD-like helicase, ATP-binding domain YPDSF_1535 IPR031308 Uncharacterised conserved protein UCP028777 YPDSF_1535 IPR005185 Inner membrane component domain YPDSF_1536 IPR010019 Integral membrane protein, YccS YPDSF_1536 IPR010020 Integral membrane protein, YccS/YhfK YPDSF_1536 IPR032692 Integral membrane protein YccS, N-terminal YPDSF_1537 IPR026256 Transcriptional regulator, TfoX/Sxy-type YPDSF_1537 IPR007076 TfoX, N-terminal YPDSF_1537 IPR007077 TfoX, C-terminal YPDSF_1538 IPR004596 Cell division suppressor protein, SulA YPDSF_1538 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1539 IPR006664 Outer membrane protein, bacterial YPDSF_1539 IPR036737 OmpA-like domain superfamily YPDSF_1539 IPR006665 OmpA-like domain YPDSF_1539 IPR002368 Outer membrane protein, OmpA YPDSF_1539 IPR000498 Outer membrane protein OmpA-like, transmembrane domain YPDSF_1539 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPDSF_1539 IPR006690 Outer membrane protein, OmpA-like, conserved site YPDSF_1540 IPR002686 Transposase IS200-like YPDSF_1540 IPR036515 Transposase IS200-like superfamily YPDSF_1541 IPR035087 MatP, N-terminal YPDSF_1541 IPR013321 Arc-type ribbon-helix-helix YPDSF_1541 IPR009390 Macrodomain Ter protein, MatP YPDSF_1541 IPR035375 MatP, C-terminal ribbon-helix-helix domain YPDSF_1541 IPR038339 MatP, N-terminal domain superfamily YPDSF_1542 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPDSF_1542 IPR008269 Peptidase S16, Lon proteolytic domain YPDSF_1542 IPR027065 Lon protease YPDSF_1542 IPR020568 Ribosomal protein S5 domain 2-type fold YPDSF_1542 IPR041699 Lon protease, AAA domain YPDSF_1543 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ YPDSF_1543 IPR029069 HotDog domain superfamily YPDSF_1543 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA YPDSF_1544 IPR016039 Thiolase-like YPDSF_1544 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPDSF_1544 IPR014030 Beta-ketoacyl synthase, N-terminal YPDSF_1544 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 YPDSF_1544 IPR000794 Beta-ketoacyl synthase YPDSF_1544 IPR018201 Beta-ketoacyl synthase, active site YPDSF_1544 IPR014031 Beta-ketoacyl synthase, C-terminal YPDSF_1545 IPR006120 Resolvase, HTH domain YPDSF_1545 IPR012337 Ribonuclease H-like superfamily YPDSF_1545 IPR036397 Ribonuclease H superfamily YPDSF_1545 IPR017894 HTH domain, IS21 transposase-type YPDSF_1545 IPR001584 Integrase, catalytic core YPDSF_1546 IPR003593 AAA+ ATPase domain YPDSF_1546 IPR001270 ClpA/B family YPDSF_1546 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_1546 IPR002611 IstB-like ATP-binding protein YPDSF_1546 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1547 IPR016039 Thiolase-like YPDSF_1547 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPDSF_1547 IPR014030 Beta-ketoacyl synthase, N-terminal YPDSF_1547 IPR014031 Beta-ketoacyl synthase, C-terminal YPDSF_1547 IPR018201 Beta-ketoacyl synthase, active site YPDSF_1547 IPR000794 Beta-ketoacyl synthase YPDSF_1547 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 YPDSF_1548 IPR036515 Transposase IS200-like superfamily YPDSF_1548 IPR002686 Transposase IS200-like YPDSF_1549 IPR002582 Holo-[acyl carrier protein] synthase YPDSF_1549 IPR008278 4'-phosphopantetheinyl transferase domain YPDSF_1549 IPR004568 Phosphopantetheine-protein transferase domain YPDSF_1549 IPR037143 4'-phosphopantetheinyl transferase domain superfamily YPDSF_1550 IPR013785 Aldolase-type TIM barrel YPDSF_1550 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ YPDSF_1550 IPR036130 Pyridoxine 5'-phosphate synthase YPDSF_1551 IPR037278 ARFGAP/RecO-like zinc finger YPDSF_1551 IPR022572 DNA replication/recombination mediator RecO, N-terminal YPDSF_1551 IPR012340 Nucleic acid-binding, OB-fold YPDSF_1551 IPR003717 Recombination protein O, RecO YPDSF_1552 IPR004044 K Homology domain, type 2 YPDSF_1552 IPR009019 K homology domain superfamily, prokaryotic type YPDSF_1552 IPR005225 Small GTP-binding protein domain YPDSF_1552 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1552 IPR006073 GTP binding domain YPDSF_1552 IPR015946 K homology domain-like, alpha/beta YPDSF_1552 IPR030388 Era-type guanine nucleotide-binding (G) domain YPDSF_1552 IPR005662 GTP-binding protein Era YPDSF_1553 IPR011907 Ribonuclease III YPDSF_1553 IPR000999 Ribonuclease III domain YPDSF_1553 IPR036389 Ribonuclease III, endonuclease domain superfamily YPDSF_1553 IPR014720 Double-stranded RNA-binding domain YPDSF_1554 IPR019533 Peptidase S26 YPDSF_1554 IPR036286 LexA/Signal peptidase-like superfamily YPDSF_1554 IPR000223 Peptidase S26A, signal peptidase I YPDSF_1554 IPR019756 Peptidase S26A, signal peptidase I, serine active site YPDSF_1554 IPR019758 Peptidase S26A, signal peptidase I, conserved site YPDSF_1554 IPR019757 Peptidase S26A, signal peptidase I, lysine active site YPDSF_1555 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1555 IPR035654 Elongation factor 4, domain IV YPDSF_1555 IPR031157 Tr-type G domain, conserved site YPDSF_1555 IPR038363 LepA, C-terminal domain superfamily YPDSF_1555 IPR004161 Translation elongation factor EFTu-like, domain 2 YPDSF_1555 IPR000640 Elongation factor EFG, domain V-like YPDSF_1555 IPR035647 EF-G domain III/V-like YPDSF_1555 IPR006297 Elongation factor 4 YPDSF_1555 IPR013842 GTP-binding protein LepA, C-terminal YPDSF_1555 IPR000795 Transcription factor, GTP-binding domain YPDSF_1555 IPR005225 Small GTP-binding protein domain YPDSF_1557 IPR007359 Positive regulator of sigma(E), RseC/MucC YPDSF_1557 IPR026268 Protein RseC YPDSF_1558 IPR038484 MucB/RseB, C-terminal domain superfamily YPDSF_1558 IPR005588 MucB/RseB YPDSF_1558 IPR033434 MucB/RseB, N-terminal YPDSF_1558 IPR033436 MucB/RseB, C-terminal YPDSF_1559 IPR026279 Sigma-E factor negative regulatory protein RseA YPDSF_1559 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily YPDSF_1559 IPR005573 Anti sigma-E protein RseA, C-terminal YPDSF_1559 IPR005572 Anti sigma-E protein RseA, N-terminal YPDSF_1560 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_1560 IPR013324 RNA polymerase sigma factor, region 3/4-like YPDSF_1560 IPR013325 RNA polymerase sigma factor, region 2 YPDSF_1560 IPR014286 RNA polymerase sigma-70 RpoE type YPDSF_1560 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 YPDSF_1560 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site YPDSF_1560 IPR039425 RNA polymerase sigma-70 like YPDSF_1560 IPR014284 RNA polymerase sigma-70 like domain YPDSF_1560 IPR007627 RNA polymerase sigma-70 region 2 YPDSF_1561 IPR005288 L-aspartate oxidase YPDSF_1561 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal YPDSF_1561 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily YPDSF_1561 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain YPDSF_1561 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily YPDSF_1561 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_1562 IPR022882 tRNA1(Val) (adenine(37)-N6)-methyltransferase YPDSF_1562 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_1562 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPDSF_1562 IPR007848 Methyltransferase small domain YPDSF_1563 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1563 IPR028621 ATP-dependent RNA helicase SrmB YPDSF_1563 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPDSF_1563 IPR001650 Helicase, C-terminal YPDSF_1563 IPR011545 DEAD/DEAH box helicase domain YPDSF_1563 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPDSF_1563 IPR014014 RNA helicase, DEAD-box type, Q motif YPDSF_1564 IPR002110 Ankyrin repeat YPDSF_1564 IPR020683 Ankyrin repeat-containing domain YPDSF_1564 IPR036770 Ankyrin repeat-containing domain superfamily YPDSF_1565 IPR029058 Alpha/Beta hydrolase fold YPDSF_1566 IPR011140 Autonomous glycyl radical cofactor GrcA YPDSF_1566 IPR019777 Formate C-acetyltransferase glycine radical, conserved site YPDSF_1566 IPR001150 Glycine radical domain YPDSF_1567 IPR018085 Uracil-DNA glycosylase, active site YPDSF_1567 IPR002043 Uracil-DNA glycosylase family 1 YPDSF_1567 IPR036895 Uracil-DNA glycosylase-like domain superfamily YPDSF_1567 IPR005122 Uracil-DNA glycosylase-like YPDSF_1568 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like YPDSF_1568 IPR029762 Pyroglutamyl peptidase I, bacterial-type YPDSF_1568 IPR033693 Pyroglutamyl peptidase I, Glu active site YPDSF_1568 IPR033694 Pyroglutamyl peptidase I, Cys active site YPDSF_1568 IPR000816 Peptidase C15, pyroglutamyl peptidase I YPDSF_1568 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily YPDSF_1571 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPDSF_1571 IPR005501 LamB/YcsF/PxpA-like YPDSF_1572 IPR003778 Carboxyltransferase domain, subdomain A and B YPDSF_1572 IPR029000 Cyclophilin-like domain superfamily YPDSF_1573 IPR010016 KipI family YPDSF_1573 IPR029000 Cyclophilin-like domain superfamily YPDSF_1573 IPR003833 Carboxyltransferase domain, subdomain C and D YPDSF_1574 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily YPDSF_1574 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 YPDSF_1575 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPDSF_1575 IPR000396 Cyclic-AMP phosphodiesterase, class-II YPDSF_1575 IPR024225 Cyclic-AMP phosphodiesterase class-II, conserved site YPDSF_1576 IPR002081 Cryptochrome/DNA photolyase class 1 YPDSF_1576 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal YPDSF_1576 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_1576 IPR006050 DNA photolyase, N-terminal YPDSF_1576 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily YPDSF_1576 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily YPDSF_1576 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain YPDSF_1577 IPR013560 Domain of unknown function DUF1722 YPDSF_1578 IPR019663 Uncharacterised protein YbfA YPDSF_1580 IPR004623 Potassium-transporting ATPase A chain YPDSF_1581 IPR023299 P-type ATPase, cytoplasmic domain N YPDSF_1581 IPR006391 P-type ATPase, B chain, subfamily IA YPDSF_1581 IPR023298 P-type ATPase, transmembrane domain superfamily YPDSF_1581 IPR001757 P-type ATPase YPDSF_1581 IPR036412 HAD-like superfamily YPDSF_1581 IPR008250 P-type ATPase, A domain superfamily YPDSF_1581 IPR018303 P-type ATPase, phosphorylation site YPDSF_1582 IPR003820 Potassium-transporting ATPase C chain YPDSF_1585 IPR011006 CheY-like superfamily YPDSF_1585 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_1585 IPR039420 Transcriptional regulatory protein WalR-like YPDSF_1585 IPR001789 Signal transduction response regulator, receiver domain YPDSF_1585 IPR001867 OmpR/PhoB-type DNA-binding domain YPDSF_1589 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YPDSF_1589 IPR005852 Phosphoglucomutase, alpha-D-glucose specific YPDSF_1589 IPR016066 Alpha-D-phosphohexomutase, conserved site YPDSF_1589 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YPDSF_1589 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YPDSF_1589 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YPDSF_1589 IPR005843 Alpha-D-phosphohexomutase, C-terminal YPDSF_1589 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily YPDSF_1590 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain YPDSF_1590 IPR005621 Negative modulator of initiation of replication SeqA YPDSF_1590 IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily YPDSF_1590 IPR033761 Negative modulator of initiation of replication SeqA, N-terminal YPDSF_1590 IPR010985 Ribbon-helix-helix YPDSF_1590 IPR013321 Arc-type ribbon-helix-helix YPDSF_1592 IPR022948 Chitooligosaccharide deacetylase ChbG-like, bacteria YPDSF_1592 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPDSF_1592 IPR006879 Carbohydrate deacetylase YdjC-like YPDSF_1593 IPR018062 HTH domain AraC-type, conserved site YPDSF_1593 IPR018060 DNA binding HTH domain, AraC-type YPDSF_1593 IPR011051 RmlC-like cupin domain superfamily YPDSF_1593 IPR020449 Transcription regulator HTH, AraC- type YPDSF_1593 IPR013096 Cupin 2, conserved barrel YPDSF_1593 IPR009057 Homeobox-like domain superfamily YPDSF_1593 IPR014710 RmlC-like jelly roll fold YPDSF_1594 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit YPDSF_1594 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily YPDSF_1595 IPR004796 Phosphotransferase system, cellobiose-type IIC component YPDSF_1595 IPR004501 Phosphotransferase system, EIIC component, type 3 YPDSF_1595 IPR003352 Phosphotransferase system, EIIC YPDSF_1596 IPR036095 PTS system IIB component-like superfamily YPDSF_1596 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPDSF_1596 IPR013012 Phosphotransferase system, EIIB component, type 3 YPDSF_1598 IPR003691 Putative fluoride ion transporter CrcB YPDSF_1599 IPR003691 Putative fluoride ion transporter CrcB YPDSF_1600 IPR013099 Potassium channel domain YPDSF_1600 IPR036291 NAD(P)-binding domain superfamily YPDSF_1600 IPR003148 Regulator of K+ conductance, N-terminal YPDSF_1601 IPR010486 HNS-dependent expression A/B YPDSF_1601 IPR038303 HNS-dependent expression A/B superfamily YPDSF_1601 IPR028623 HNS-dependent expression B YPDSF_1602 IPR011541 Nickel/cobalt transporter, high-affinity YPDSF_1602 IPR004688 Transition metal uptake transporter nickel/cobalt YPDSF_1603 IPR004937 Urea transporter YPDSF_1603 IPR029020 Ammonium/urea transporter YPDSF_1604 IPR002669 Urease accessory protein UreD YPDSF_1605 IPR002669 Urease accessory protein UreD YPDSF_1606 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1606 IPR004400 Urease accessory protein UreG YPDSF_1606 IPR003495 CobW/HypB/UreG, nucleotide-binding domain YPDSF_1607 IPR002639 Urease accessory protein UreF YPDSF_1607 IPR038277 UreF domain superfamily YPDSF_1608 IPR007864 Urease accessory protein UreE, C-terminal domain YPDSF_1608 IPR036118 UreE urease accessory, N-terminal domain superfamily YPDSF_1608 IPR012406 Urease accessory protein UreE YPDSF_1608 IPR004029 UreE urease accessory, N-terminal YPDSF_1609 IPR017950 Urease active site YPDSF_1609 IPR011612 Urease alpha-subunit, N-terminal domain YPDSF_1609 IPR032466 Metal-dependent hydrolase YPDSF_1609 IPR005848 Urease, alpha subunit YPDSF_1609 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPDSF_1609 IPR006680 Amidohydrolase-related YPDSF_1609 IPR017951 Urease alpha subunit, C-terminal YPDSF_1609 IPR029754 Urease nickel binding site YPDSF_1610 IPR002019 Urease, beta subunit YPDSF_1610 IPR036461 Urease, beta subunit superfamily YPDSF_1611 IPR002026 Urease, gamma/gamma-beta subunit YPDSF_1611 IPR012010 Urease, gamma subunit YPDSF_1611 IPR036463 Urease, gamma subunit superfamily YPDSF_1612 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1612 IPR014137 Nickel import ATP-binding protein NikE YPDSF_1612 IPR015858 ABC transporter, nickel import, NikE YPDSF_1612 IPR017871 ABC transporter, conserved site YPDSF_1612 IPR003593 AAA+ ATPase domain YPDSF_1612 IPR003439 ABC transporter-like YPDSF_1613 IPR003593 AAA+ ATPase domain YPDSF_1613 IPR017871 ABC transporter, conserved site YPDSF_1613 IPR015863 ABC transporter, hemin import, HmuV YPDSF_1613 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1613 IPR003439 ABC transporter-like YPDSF_1614 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPDSF_1614 IPR035906 MetI-like superfamily YPDSF_1614 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_1615 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_1615 IPR035906 MetI-like superfamily YPDSF_1616 IPR000914 Solute-binding protein family 5 domain YPDSF_1616 IPR023765 Solute-binding protein family 5, conserved site YPDSF_1616 IPR039424 Solute-binding protein family 5 YPDSF_1616 IPR030678 Peptide/nickel binding protein, MppA-type YPDSF_1616 IPR011980 Nickel ABC transporter, substrate-binding protein NikA YPDSF_1617 IPR019844 Cold-shock (CSD) domain YPDSF_1617 IPR012340 Nucleic acid-binding, OB-fold YPDSF_1617 IPR002059 Cold-shock protein, DNA-binding YPDSF_1617 IPR012156 Cold shock, CspA YPDSF_1617 IPR011129 Cold shock domain YPDSF_1619 IPR009587 Protein of unknown function DUF1198 YPDSF_1620 IPR018994 Protein of unknown function DUF2002 YPDSF_1621 IPR009435 Acid shock YPDSF_1621 IPR023497 Acid shock protein YPDSF_1622 IPR029039 Flavoprotein-like superfamily YPDSF_1622 IPR020852 Ribonucleotide reductase, class Ib, NrdI, bacterial YPDSF_1622 IPR004465 Ribonucleotide reductase Class Ib, NrdI YPDSF_1623 IPR013346 Ribonucleotide reductase, class I , alpha subunit YPDSF_1623 IPR039718 Ribonucleoside-diphosphate reductase large subunit YPDSF_1623 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal YPDSF_1623 IPR013554 Ribonucleotide reductase N-terminal YPDSF_1623 IPR013509 Ribonucleotide reductase large subunit, N-terminal YPDSF_1623 IPR000788 Ribonucleotide reductase large subunit, C-terminal YPDSF_1623 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE YPDSF_1624 IPR000358 Ribonucleotide reductase small subunit family YPDSF_1624 IPR030475 Ribonucleotide reductase small subunit, acitve site YPDSF_1624 IPR009078 Ferritin-like superfamily YPDSF_1624 IPR012348 Ribonucleotide reductase-like YPDSF_1624 IPR033909 Ribonucleotide reductase small subunit YPDSF_1624 IPR026494 Ribonucleoside reductase subunit beta, NrdF YPDSF_1625 IPR003593 AAA+ ATPase domain YPDSF_1625 IPR003439 ABC transporter-like YPDSF_1625 IPR017871 ABC transporter, conserved site YPDSF_1625 IPR000644 CBS domain YPDSF_1625 IPR005892 Glycine betaine transport ATP-binding subunit YPDSF_1625 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1626 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_1626 IPR035906 MetI-like superfamily YPDSF_1627 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain YPDSF_1629 IPR012681 Nucleobase cation symporter-1, NCS1 YPDSF_1629 IPR001248 Purine-cytosine permease YPDSF_1629 IPR038271 Purine-cytosine permease superfamily YPDSF_1630 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain YPDSF_1630 IPR006309 DNA polymerase 3, epsilon subunit YPDSF_1630 IPR013520 Exonuclease, RNase T/DNA polymerase III YPDSF_1630 IPR012337 Ribonuclease H-like superfamily YPDSF_1630 IPR036397 Ribonuclease H superfamily YPDSF_1631 IPR002156 Ribonuclease H domain YPDSF_1631 IPR012337 Ribonuclease H-like superfamily YPDSF_1631 IPR022892 Ribonuclease HI YPDSF_1631 IPR036397 Ribonuclease H superfamily YPDSF_1632 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_1632 IPR013216 Methyltransferase type 11 YPDSF_1632 IPR026669 Arsenite methyltransferase-like YPDSF_1633 IPR035680 Hydroxyacylglutathione hydrolase, MBL domain YPDSF_1633 IPR017782 Hydroxyacylglutathione hydrolase YPDSF_1633 IPR001279 Metallo-beta-lactamase YPDSF_1633 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPDSF_1633 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain YPDSF_1634 IPR008258 Transglycosylase SLT domain 1 YPDSF_1634 IPR018392 LysM domain YPDSF_1634 IPR036779 LysM domain superfamily YPDSF_1634 IPR023346 Lysozyme-like domain superfamily YPDSF_1634 IPR000189 Prokaryotic transglycosylase, active site YPDSF_1635 IPR022958 Uncharacterised protein family UPF0294 YPDSF_1635 IPR036691 Endonuclease/exonuclease/phosphatase superfamily YPDSF_1635 IPR005135 Endonuclease/exonuclease/phosphatase YPDSF_1636 IPR036812 NADP-dependent oxidoreductase domain superfamily YPDSF_1636 IPR023210 NADP-dependent oxidoreductase domain YPDSF_1636 IPR018170 Aldo/keto reductase, conserved site YPDSF_1636 IPR020471 Aldo/keto reductase YPDSF_1637 IPR023214 HAD superfamily YPDSF_1637 IPR036412 HAD-like superfamily YPDSF_1637 IPR006543 Histidinol-phosphate phosphatase YPDSF_1637 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase YPDSF_1637 IPR006549 HAD-superfamily hydrolase,subfamily IIIA YPDSF_1638 IPR026253 Methionine import ATP-binding protein MetN YPDSF_1638 IPR003593 AAA+ ATPase domain YPDSF_1638 IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria YPDSF_1638 IPR003439 ABC transporter-like YPDSF_1638 IPR017871 ABC transporter, conserved site YPDSF_1638 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal YPDSF_1638 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain YPDSF_1638 IPR018449 NIL domain YPDSF_1638 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1639 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_1639 IPR035906 MetI-like superfamily YPDSF_1640 IPR004872 Lipoprotein NlpA family YPDSF_1641 IPR030852 Outer membrane lipoprotein RcsF YPDSF_1642 IPR023368 Uncharacterised protein family UPF0066, conserved site YPDSF_1642 IPR041369 TrmO, C-terminal YPDSF_1642 IPR023370 TrmO-like, N-terminal domain YPDSF_1642 IPR040372 YaeB-like YPDSF_1642 IPR036413 YaeB-like superfamily YPDSF_1642 IPR036414 YaeB, N-terminal domain superfamily YPDSF_1643 IPR036621 Anticodon-binding domain superfamily YPDSF_1643 IPR004154 Anticodon-binding YPDSF_1643 IPR006195 Aminoacyl-tRNA synthetase, class II YPDSF_1643 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain YPDSF_1643 IPR033730 Prokaryote proline-tRNA ligase core domain YPDSF_1643 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 YPDSF_1643 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) YPDSF_1643 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type YPDSF_1643 IPR002316 Proline-tRNA ligase, class IIa YPDSF_1643 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily YPDSF_1644 IPR038139 NlpE, C-terminal domain superfamily YPDSF_1644 IPR033450 NlpE, C-terminal OB domain YPDSF_1644 IPR007298 Copper resistance lipoprotein NlpE YPDSF_1645 IPR000352 Peptide chain release factor class I YPDSF_1646 IPR009822 YaeQ YPDSF_1646 IPR038590 YaeQ superfamily YPDSF_1646 IPR011335 Restriction endonuclease type II-like YPDSF_1647 IPR009624 Uncharacterised protein family UPF0253 YPDSF_1648 IPR023534 Rof/RNase P-like YPDSF_1648 IPR038626 Rof-like superfamily YPDSF_1648 IPR009778 Modulator of Rho-dependent transcription termination YPDSF_1649 IPR009056 Cytochrome c-like domain YPDSF_1649 IPR036909 Cytochrome c-like domain superfamily YPDSF_1649 IPR008168 Cytochrome c, class IC YPDSF_1650 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_1650 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal YPDSF_1650 IPR012094 tRNA(Ile)-lysidine synthase YPDSF_1650 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal YPDSF_1650 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain YPDSF_1650 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal YPDSF_1651 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YPDSF_1651 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain YPDSF_1651 IPR037523 Vicinal oxygen chelate (VOC) domain YPDSF_1651 IPR037478 YwkD-like domain YPDSF_1652 IPR029045 ClpP/crotonase-like domain superfamily YPDSF_1652 IPR001095 Acetyl-CoA carboxylase, alpha subunit YPDSF_1652 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal YPDSF_1653 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain YPDSF_1653 IPR016195 Polymerase/histidinol phosphatase-like YPDSF_1653 IPR003141 Polymerase/histidinol phosphatase, N-terminal YPDSF_1653 IPR004805 DNA polymerase III, alpha subunit YPDSF_1653 IPR004013 PHP domain YPDSF_1653 IPR041931 Bacterial DNA polymerase III alpha subunit, thumb domain YPDSF_1653 IPR029460 DNA polymerase, helix-hairpin-helix motif YPDSF_1653 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YPDSF_1653 IPR040982 DNA polymerase III alpha subunit finger domain YPDSF_1654 IPR012337 Ribonuclease H-like superfamily YPDSF_1654 IPR024567 Ribonuclease HII/HIII domain YPDSF_1654 IPR036397 Ribonuclease H superfamily YPDSF_1654 IPR001352 Ribonuclease HII/HIII YPDSF_1654 IPR022898 Ribonuclease HII YPDSF_1655 IPR003835 Glycosyl transferase, family 19 YPDSF_1656 IPR001451 Hexapeptide repeat YPDSF_1656 IPR018357 Hexapeptide transferase, conserved site YPDSF_1656 IPR011004 Trimeric LpxA-like superfamily YPDSF_1656 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily YPDSF_1656 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase YPDSF_1656 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal YPDSF_1657 IPR029069 HotDog domain superfamily YPDSF_1657 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YPDSF_1657 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ YPDSF_1658 IPR001451 Hexapeptide repeat YPDSF_1658 IPR018357 Hexapeptide transferase, conserved site YPDSF_1658 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD YPDSF_1658 IPR011004 Trimeric LpxA-like superfamily YPDSF_1658 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region YPDSF_1659 IPR005632 Chaperone protein Skp YPDSF_1659 IPR024930 Skp domain superfamily YPDSF_1660 IPR039910 Surface antigen D15-like YPDSF_1660 IPR010827 POTRA domain, BamA/TamA-like YPDSF_1660 IPR023707 Outer membrane protein assembly factor BamA YPDSF_1660 IPR034746 POTRA domain YPDSF_1660 IPR000184 Bacterial surface antigen (D15) YPDSF_1661 IPR008915 Peptidase M50 YPDSF_1661 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase YPDSF_1661 IPR036034 PDZ superfamily YPDSF_1661 IPR041489 PDZ domain 6 YPDSF_1661 IPR001478 PDZ domain YPDSF_1662 IPR000374 Phosphatidate cytidylyltransferase YPDSF_1663 IPR036424 Decaprenyl diphosphate synthase-like superfamily YPDSF_1663 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site YPDSF_1663 IPR001441 Decaprenyl diphosphate synthase-like YPDSF_1664 IPR036169 DXP reductoisomerase, C-terminal domain superfamily YPDSF_1664 IPR026877 DXP reductoisomerase C-terminal domain YPDSF_1664 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal YPDSF_1664 IPR036291 NAD(P)-binding domain superfamily YPDSF_1664 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal YPDSF_1664 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase YPDSF_1665 IPR002661 Ribosome recycling factor YPDSF_1665 IPR036191 RRF superfamily YPDSF_1665 IPR023584 Ribosome recycling factor domain YPDSF_1666 IPR001048 Aspartate/glutamate/uridylate kinase YPDSF_1666 IPR011817 Uridylate kinase YPDSF_1666 IPR015963 Uridylate kinase, bacteria YPDSF_1666 IPR036393 Acetylglutamate kinase-like superfamily YPDSF_1668 IPR009060 UBA-like superfamily YPDSF_1668 IPR036402 Elongation factor Ts, dimerisation domain superfamily YPDSF_1668 IPR001816 Translation elongation factor EFTs/EF1B YPDSF_1668 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation YPDSF_1668 IPR018101 Translation elongation factor Ts, conserved site YPDSF_1669 IPR001865 Ribosomal protein S2 YPDSF_1669 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily YPDSF_1669 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid YPDSF_1669 IPR018130 Ribosomal protein S2, conserved site YPDSF_1670 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 YPDSF_1670 IPR036005 Creatinase/aminopeptidase-like YPDSF_1670 IPR000994 Peptidase M24 YPDSF_1670 IPR001714 Peptidase M24, methionine aminopeptidase YPDSF_1671 IPR003607 HD/PDEase domain YPDSF_1671 IPR006674 HD domain YPDSF_1671 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase YPDSF_1671 IPR002934 Polymerase, nucleotidyl transferase domain YPDSF_1671 IPR002912 ACT domain YPDSF_1671 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme YPDSF_1672 IPR001451 Hexapeptide repeat YPDSF_1672 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family YPDSF_1672 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily YPDSF_1672 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 YPDSF_1672 IPR011004 Trimeric LpxA-like superfamily YPDSF_1672 IPR018357 Hexapeptide transferase, conserved site YPDSF_1673 IPR020911 Uncharacterised protein family UPF0325 YPDSF_1674 IPR001094 Flavodoxin-like YPDSF_1674 IPR029039 Flavoprotein-like superfamily YPDSF_1674 IPR008254 Flavodoxin/nitric oxide synthase YPDSF_1675 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YPDSF_1675 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPDSF_1675 IPR006145 Pseudouridine synthase, RsuA/RluA YPDSF_1676 IPR007384 Protein of unknown function UCP006257 YPDSF_1676 IPR036814 YqcC-like superfamily YPDSF_1676 IPR023376 YqcC-like domain YPDSF_1677 IPR036515 Transposase IS200-like superfamily YPDSF_1677 IPR002686 Transposase IS200-like YPDSF_1678 IPR038228 Syd superfamily YPDSF_1678 IPR009948 Syd YPDSF_1679 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF YPDSF_1679 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal YPDSF_1679 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 YPDSF_1680 IPR021826 Domain of unknown function DUF3412 YPDSF_1680 IPR031100 LOG family YPDSF_1680 IPR037153 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH-like superfamily YPDSF_1680 IPR027820 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH, N-terminal YPDSF_1681 IPR038969 Flap endonuclease YPDSF_1681 IPR008918 Helix-hairpin-helix motif, class 2 YPDSF_1681 IPR029060 PIN-like domain superfamily YPDSF_1681 IPR022895 Flap endonuclease Xni YPDSF_1681 IPR002421 5'-3' exonuclease, N-terminal YPDSF_1681 IPR020045 DNA polymerase I-like, H3TH domain YPDSF_1681 IPR036279 5'-3' exonuclease, C-terminal domain superfamily YPDSF_1681 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal YPDSF_1682 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_1682 IPR011224 Ribosomal RNA large subunit methyltransferase M YPDSF_1682 IPR002877 Ribosomal RNA methyltransferase FtsJ domain YPDSF_1682 IPR040739 RlmM ferredoxin-like domain YPDSF_1683 IPR006696 Protein of unknown function DUF423 YPDSF_1684 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_1684 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_1684 IPR000847 Transcription regulator HTH, LysR YPDSF_1684 IPR005119 LysR, substrate-binding YPDSF_1685 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_1685 IPR000192 Aminotransferase class V domain YPDSF_1685 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_1685 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_1685 IPR022471 Cysteine desulphurase, catalytic subunit, CsdA YPDSF_1685 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPDSF_1686 IPR003808 Fe-S metabolism associated domain, SufE-like YPDSF_1686 IPR017763 Cysteine desulfurase, sulphur acceptor subunit CsdE YPDSF_1687 IPR000594 THIF-type NAD/FAD binding fold YPDSF_1687 IPR035985 Ubiquitin-activating enzyme YPDSF_1688 IPR005300 Lytic transglycosylase MltA, domain B YPDSF_1688 IPR034654 MltA, 3D domain YPDSF_1688 IPR026044 Membrane-bound lytic murein transglycosylase A YPDSF_1688 IPR010611 3D domain YPDSF_1688 IPR036908 RlpA-like domain superfamily YPDSF_1689 IPR006311 Twin-arginine translocation pathway, signal sequence YPDSF_1689 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain YPDSF_1689 IPR021731 AMIN domain YPDSF_1690 IPR016181 Acyl-CoA N-acyltransferase YPDSF_1690 IPR033719 N-acetylglutamate synthase, kinase-like domain YPDSF_1690 IPR010167 Amino-acid N-acetyltransferase YPDSF_1690 IPR001048 Aspartate/glutamate/uridylate kinase YPDSF_1690 IPR000182 GNAT domain YPDSF_1690 IPR036393 Acetylglutamate kinase-like superfamily YPDSF_1691 IPR006120 Resolvase, HTH domain YPDSF_1691 IPR012337 Ribonuclease H-like superfamily YPDSF_1691 IPR017894 HTH domain, IS21 transposase-type YPDSF_1691 IPR001584 Integrase, catalytic core YPDSF_1691 IPR036397 Ribonuclease H superfamily YPDSF_1692 IPR002611 IstB-like ATP-binding protein YPDSF_1692 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_1692 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1692 IPR003593 AAA+ ATPase domain YPDSF_1692 IPR001270 ClpA/B family YPDSF_1693 IPR010167 Amino-acid N-acetyltransferase YPDSF_1693 IPR033719 N-acetylglutamate synthase, kinase-like domain YPDSF_1693 IPR001048 Aspartate/glutamate/uridylate kinase YPDSF_1693 IPR016181 Acyl-CoA N-acyltransferase YPDSF_1693 IPR036393 Acetylglutamate kinase-like superfamily YPDSF_1693 IPR000182 GNAT domain YPDSF_1694 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1694 IPR041851 RecBCD enzyme subunit RecD, N-terminal domain YPDSF_1694 IPR027785 UvrD-like helicase C-terminal domain YPDSF_1694 IPR003593 AAA+ ATPase domain YPDSF_1694 IPR006344 RecBCD enzyme subunit RecD YPDSF_1695 IPR011604 Exonuclease, phage-type/RecB, C-terminal YPDSF_1695 IPR034739 UvrD/AddA helicase, N-terminal YPDSF_1695 IPR014016 UvrD-like helicase, ATP-binding domain YPDSF_1695 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1695 IPR011335 Restriction endonuclease type II-like YPDSF_1695 IPR004586 RecBCD enzyme subunit RecB YPDSF_1695 IPR014017 UvrD-like DNA helicase, C-terminal YPDSF_1695 IPR000212 DNA helicase, UvrD/REP type YPDSF_1695 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type YPDSF_1696 IPR007863 Peptidase M16, C-terminal YPDSF_1696 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like YPDSF_1696 IPR011765 Peptidase M16, N-terminal YPDSF_1696 IPR032632 Peptidase M16, middle/third domain YPDSF_1696 IPR001431 Peptidase M16, zinc-binding site YPDSF_1697 IPR006697 RecBCD enzyme subunit RecC YPDSF_1697 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1697 IPR013986 DExx box DNA helicase domain superfamily YPDSF_1697 IPR041500 RecC, C-terminal YPDSF_1697 IPR011335 Restriction endonuclease type II-like YPDSF_1702 IPR000398 Thymidylate synthase YPDSF_1702 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily YPDSF_1702 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain YPDSF_1702 IPR020940 Thymidylate synthase, active site YPDSF_1703 IPR001640 Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase Lgt YPDSF_1704 IPR029016 GAF-like domain superfamily YPDSF_1704 IPR008279 PEP-utilising enzyme, mobile domain YPDSF_1704 IPR040442 Pyruvate kinase-like domain superfamily YPDSF_1704 IPR023151 PEP-utilising enzyme, conserved site YPDSF_1704 IPR036637 Phosphohistidine domain superfamily YPDSF_1704 IPR006318 Phosphotransferase system, enzyme I-like YPDSF_1704 IPR000121 PEP-utilising enzyme, C-terminal YPDSF_1704 IPR008731 Phosphotransferase system, enzyme I N-terminal YPDSF_1704 IPR036618 PtsI, HPr-binding domain superfamily YPDSF_1704 IPR003018 GAF domain YPDSF_1704 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPDSF_1704 IPR018274 PEP-utilising enzyme, active site YPDSF_1705 IPR022927 RNA pyrophosphohydrolase RppH YPDSF_1705 IPR020476 NUDIX hydrolase YPDSF_1705 IPR015797 NUDIX hydrolase-like domain superfamily YPDSF_1705 IPR020084 NUDIX hydrolase, conserved site YPDSF_1705 IPR000086 NUDIX hydrolase domain YPDSF_1706 IPR037057 DNA mismatch repair MutH/Restriction endonuclease, type II superfamily YPDSF_1706 IPR011335 Restriction endonuclease type II-like YPDSF_1706 IPR004230 DNA mismatch repair protein MutH YPDSF_1706 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II YPDSF_1707 IPR036812 NADP-dependent oxidoreductase domain superfamily YPDSF_1707 IPR020471 Aldo/keto reductase YPDSF_1707 IPR023210 NADP-dependent oxidoreductase domain YPDSF_1709 IPR023727 Lysophospholipid transporter LplT YPDSF_1709 IPR011701 Major facilitator superfamily YPDSF_1709 IPR036259 MFS transporter superfamily YPDSF_1710 IPR002123 Phospholipid/glycerol acyltransferase YPDSF_1710 IPR042099 AMP-dependent synthetase-like superfamily YPDSF_1710 IPR000873 AMP-dependent synthetase/ligase YPDSF_1710 IPR020845 AMP-binding, conserved site YPDSF_1710 IPR025110 AMP-binding enzyme, C-terminal domain YPDSF_1710 IPR023775 Bifunctional protein Aas YPDSF_1711 IPR006657 Molybdopterin dinucleotide-binding domain YPDSF_1711 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPDSF_1711 IPR006656 Molybdopterin oxidoreductase YPDSF_1711 IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase YPDSF_1711 IPR009010 Aspartate decarboxylase-like domain superfamily YPDSF_1712 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPDSF_1712 IPR028082 Periplasmic binding protein-like I YPDSF_1712 IPR000843 LacI-type HTH domain YPDSF_1713 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site YPDSF_1713 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal YPDSF_1713 IPR029066 PLP-binding barrel YPDSF_1713 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site YPDSF_1713 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal YPDSF_1713 IPR002986 Diaminopimelate decarboxylase, LysA YPDSF_1713 IPR000183 Ornithine/DAP/Arg decarboxylase YPDSF_1713 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal YPDSF_1714 IPR037414 Transcriptional activator protein LysR, PBP2 domain YPDSF_1714 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_1714 IPR005119 LysR, substrate-binding YPDSF_1714 IPR000847 Transcription regulator HTH, LysR YPDSF_1714 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_1715 IPR036259 MFS transporter superfamily YPDSF_1715 IPR020846 Major facilitator superfamily domain YPDSF_1715 IPR011701 Major facilitator superfamily YPDSF_1716 IPR005119 LysR, substrate-binding YPDSF_1716 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_1716 IPR000847 Transcription regulator HTH, LysR YPDSF_1716 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_1719 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPDSF_1719 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding YPDSF_1719 IPR004090 Chemotaxis methyl-accepting receptor YPDSF_1719 IPR003660 HAMP domain YPDSF_1719 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YPDSF_1719 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPDSF_1721 IPR001207 Transposase, mutator type YPDSF_1722 IPR013096 Cupin 2, conserved barrel YPDSF_1722 IPR025499 Pectin degradation protein KdgF YPDSF_1722 IPR014710 RmlC-like jelly roll fold YPDSF_1722 IPR011051 RmlC-like cupin domain superfamily YPDSF_1723 IPR014710 RmlC-like jelly roll fold YPDSF_1723 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal YPDSF_1723 IPR007045 5-keto 4-deoxyuronate isomerase YPDSF_1723 IPR021120 KduI/IolB isomerase YPDSF_1723 IPR011051 RmlC-like cupin domain superfamily YPDSF_1724 IPR036291 NAD(P)-binding domain superfamily YPDSF_1724 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPDSF_1724 IPR002347 Short-chain dehydrogenase/reductase SDR YPDSF_1724 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase YPDSF_1725 IPR010702 Periplasmic pectate lyase YPDSF_1726 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_1726 IPR035906 MetI-like superfamily YPDSF_1727 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_1727 IPR035906 MetI-like superfamily YPDSF_1728 IPR003593 AAA+ ATPase domain YPDSF_1728 IPR003439 ABC transporter-like YPDSF_1728 IPR017871 ABC transporter, conserved site YPDSF_1728 IPR005116 Transport-associated OB, type 1 YPDSF_1728 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1728 IPR040582 MalK, OB fold domain YPDSF_1728 IPR008995 Molybdate/tungstate binding, C-terminal YPDSF_1729 IPR006059 Bacterial extracellular solute-binding protein YPDSF_1730 IPR009331 Oligogalacturonate-specific porin YPDSF_1731 IPR007404 LexA-binding, inner membrane-associated putative hydrolase YPDSF_1731 IPR016956 Inner membrane protein YdjM YPDSF_1733 IPR036366 PGBD superfamily YPDSF_1733 IPR002502 N-acetylmuramoyl-L-alanine amidase domain YPDSF_1733 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily YPDSF_1733 IPR036365 PGBD-like superfamily YPDSF_1734 IPR011991 ArsR-like helix-turn-helix domain YPDSF_1734 IPR005471 Transcription regulator IclR, N-terminal YPDSF_1734 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_1734 IPR029016 GAF-like domain superfamily YPDSF_1734 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_1734 IPR014757 Transcription regulator IclR, C-terminal YPDSF_1735 IPR015943 WD40/YVTN repeat-like-containing domain superfamily YPDSF_1735 IPR027946 Oligogalacturonate lyase domain YPDSF_1736 IPR011701 Major facilitator superfamily YPDSF_1736 IPR020846 Major facilitator superfamily domain YPDSF_1736 IPR036259 MFS transporter superfamily YPDSF_1737 IPR008962 PapD-like superfamily YPDSF_1737 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPDSF_1737 IPR001829 Pili assembly chaperone, bacterial YPDSF_1737 IPR016148 Pili assembly chaperone, C-terminal YPDSF_1737 IPR013783 Immunoglobulin-like fold YPDSF_1737 IPR016147 Pili assembly chaperone, N-terminal YPDSF_1737 IPR018046 Pili assembly chaperone, conserved site YPDSF_1739 IPR042186 Outer membrane usher protein FimD, plug domain YPDSF_1739 IPR000015 Outer membrane usher protein YPDSF_1739 IPR037224 PapC, N-terminal domain superfamily YPDSF_1739 IPR025885 PapC, N-terminal domain YPDSF_1739 IPR025949 PapC-like, C-terminal domain YPDSF_1739 IPR018030 Fimbrial membrane usher, conserved site YPDSF_1740 IPR016148 Pili assembly chaperone, C-terminal YPDSF_1740 IPR008962 PapD-like superfamily YPDSF_1740 IPR016147 Pili assembly chaperone, N-terminal YPDSF_1740 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPDSF_1740 IPR018046 Pili assembly chaperone, conserved site YPDSF_1740 IPR013783 Immunoglobulin-like fold YPDSF_1740 IPR001829 Pili assembly chaperone, bacterial YPDSF_1741 IPR008966 Adhesion domain superfamily YPDSF_1741 IPR036937 Fimbrial-type adhesion domain superfamily YPDSF_1741 IPR000259 Fimbrial-type adhesion domain YPDSF_1742 IPR001915 Peptidase M48 YPDSF_1742 IPR022919 Peptidase M48, protease HtpX, putative YPDSF_1743 IPR029045 ClpP/crotonase-like domain superfamily YPDSF_1743 IPR004447 C-terminal-processing peptidase S41A YPDSF_1743 IPR005151 Tail specific protease YPDSF_1743 IPR001478 PDZ domain YPDSF_1743 IPR040573 Tail specific protease, N-terminal domain YPDSF_1743 IPR036034 PDZ superfamily YPDSF_1743 IPR020992 Tail specific protease, C-terminal YPDSF_1744 IPR035236 RNA chaperone ProQ, C-terminal YPDSF_1744 IPR036442 ProQ/FinO domain superfamily YPDSF_1744 IPR016103 ProQ/FinO domain YPDSF_1744 IPR023529 RNA chaperone ProQ YPDSF_1745 IPR029016 GAF-like domain superfamily YPDSF_1745 IPR003018 GAF domain YPDSF_1745 IPR000614 Free Met sulfoxide reductase conserved site YPDSF_1746 IPR011031 Multihaem cytochrome YPDSF_1746 IPR007498 Intermembrane transport protein PqiA-like YPDSF_1746 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type YPDSF_1747 IPR003399 Mce/MlaD YPDSF_1751 IPR018046 Pili assembly chaperone, conserved site YPDSF_1751 IPR001829 Pili assembly chaperone, bacterial YPDSF_1751 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPDSF_1751 IPR008962 PapD-like superfamily YPDSF_1751 IPR016147 Pili assembly chaperone, N-terminal YPDSF_1751 IPR013783 Immunoglobulin-like fold YPDSF_1751 IPR016148 Pili assembly chaperone, C-terminal YPDSF_1754 IPR009950 Protein of unknown function DUF1480 YPDSF_1757 IPR036397 Ribonuclease H superfamily YPDSF_1757 IPR012337 Ribonuclease H-like superfamily YPDSF_1757 IPR006120 Resolvase, HTH domain YPDSF_1757 IPR001584 Integrase, catalytic core YPDSF_1757 IPR017894 HTH domain, IS21 transposase-type YPDSF_1758 IPR001270 ClpA/B family YPDSF_1758 IPR003593 AAA+ ATPase domain YPDSF_1758 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1758 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_1758 IPR002611 IstB-like ATP-binding protein YPDSF_1761 IPR029066 PLP-binding barrel YPDSF_1761 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site YPDSF_1761 IPR001608 Alanine racemase, N-terminal YPDSF_1761 IPR011079 Alanine racemase, C-terminal YPDSF_1761 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal YPDSF_1761 IPR000821 Alanine racemase YPDSF_1763 IPR011049 Serralysin-like metalloprotease, C-terminal YPDSF_1763 IPR024973 ESPR domain YPDSF_1763 IPR008640 Head domain of trimeric autotransporter adhesin YPDSF_1763 IPR005594 YadA-like, C-terminal YPDSF_1763 IPR008635 Coiled stalk of trimeric autotransporter adhesin YPDSF_1764 IPR024973 ESPR domain YPDSF_1764 IPR008635 Coiled stalk of trimeric autotransporter adhesin YPDSF_1764 IPR008640 Head domain of trimeric autotransporter adhesin YPDSF_1764 IPR011049 Serralysin-like metalloprotease, C-terminal YPDSF_1764 IPR005594 YadA-like, C-terminal YPDSF_1765 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily YPDSF_1765 IPR002502 N-acetylmuramoyl-L-alanine amidase domain YPDSF_1765 IPR036366 PGBD superfamily YPDSF_1765 IPR036365 PGBD-like superfamily YPDSF_1767 IPR007439 Chemotaxis phosphatase, CheZ YPDSF_1768 IPR011006 CheY-like superfamily YPDSF_1768 IPR001789 Signal transduction response regulator, receiver domain YPDSF_1769 IPR008248 Protein-glutamate methylesterase/protein-glutamine glutaminase, CheB type YPDSF_1769 IPR011006 CheY-like superfamily YPDSF_1769 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase YPDSF_1769 IPR035909 Methylesterase CheB, C-terminal YPDSF_1769 IPR001789 Signal transduction response regulator, receiver domain YPDSF_1770 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily YPDSF_1770 IPR026024 Chemotaxis protein methyltransferase CheR YPDSF_1770 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal YPDSF_1770 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal YPDSF_1770 IPR000780 MCP methyltransferase, CheR-type YPDSF_1770 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_1771 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding YPDSF_1771 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPDSF_1771 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YPDSF_1771 IPR003660 HAMP domain YPDSF_1771 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPDSF_1771 IPR004090 Chemotaxis methyl-accepting receptor YPDSF_1772 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding YPDSF_1772 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YPDSF_1772 IPR004090 Chemotaxis methyl-accepting receptor YPDSF_1772 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPDSF_1772 IPR003660 HAMP domain YPDSF_1772 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPDSF_1775 IPR036709 Autotransporter beta-domain superfamily YPDSF_1775 IPR013425 Autotransporter-associated beta strand repeat YPDSF_1775 IPR006315 Outer membrane autotransporter barrel YPDSF_1775 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPDSF_1775 IPR005546 Autotransporter beta-domain YPDSF_1775 IPR011050 Pectin lyase fold/virulence factor YPDSF_1776 IPR039446 Transcriptional regulator DauR-like YPDSF_1776 IPR013559 YheO-like YPDSF_1776 IPR039445 Transcriptional regulator DauR-like, HTH domain YPDSF_1778 IPR006175 YjgF/YER057c/UK114 family YPDSF_1778 IPR006056 RidA family YPDSF_1778 IPR019897 RidA, conserved site YPDSF_1778 IPR035959 RutC-like superfamily YPDSF_1779 IPR036259 MFS transporter superfamily YPDSF_1779 IPR020846 Major facilitator superfamily domain YPDSF_1779 IPR011701 Major facilitator superfamily YPDSF_1780 IPR002545 CheW-like domain YPDSF_1780 IPR036061 CheW-like domain superfamily YPDSF_1780 IPR039315 Chemotaxis protein CheW YPDSF_1781 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPDSF_1781 IPR005467 Histidine kinase domain YPDSF_1781 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_1781 IPR035891 CheY-binding domain of CheA YPDSF_1781 IPR036641 HPT domain superfamily YPDSF_1781 IPR015162 CheY binding YPDSF_1781 IPR002545 CheW-like domain YPDSF_1781 IPR036061 CheW-like domain superfamily YPDSF_1781 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily YPDSF_1781 IPR003594 Histidine kinase/HSP90-like ATPase YPDSF_1781 IPR004105 Histidine kinase CheA-like, homodimeric domain YPDSF_1781 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPDSF_1781 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPDSF_1782 IPR025713 Motility protein B, N-terminal domain YPDSF_1782 IPR006665 OmpA-like domain YPDSF_1782 IPR036737 OmpA-like domain superfamily YPDSF_1783 IPR002898 MotA/TolQ/ExbB proton channel YPDSF_1783 IPR000540 Flagellar motor protein MotA, conserved site YPDSF_1783 IPR022522 Flagellar motor stator, MotA YPDSF_1784 IPR007944 Flagellar transcriptional activator FlhC YPDSF_1785 IPR036194 Flagellar transcriptional activator FlhD superfamily YPDSF_1785 IPR023559 Flagellar transcriptional activator FlhD YPDSF_1786 IPR001757 P-type ATPase YPDSF_1786 IPR018303 P-type ATPase, phosphorylation site YPDSF_1786 IPR023298 P-type ATPase, transmembrane domain superfamily YPDSF_1786 IPR006068 Cation-transporting P-type ATPase, C-terminal YPDSF_1786 IPR004014 Cation-transporting P-type ATPase, N-terminal YPDSF_1786 IPR023299 P-type ATPase, cytoplasmic domain N YPDSF_1786 IPR008250 P-type ATPase, A domain superfamily YPDSF_1786 IPR006415 P-type ATPase, subfamily IIIB YPDSF_1786 IPR036412 HAD-like superfamily YPDSF_1786 IPR023214 HAD superfamily YPDSF_1787 IPR003416 MgtC/SapB/SrpB/YhiD family YPDSF_1788 IPR004090 Chemotaxis methyl-accepting receptor YPDSF_1788 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPDSF_1788 IPR003660 HAMP domain YPDSF_1788 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPDSF_1788 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding YPDSF_1788 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YPDSF_1789 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YPDSF_1789 IPR004090 Chemotaxis methyl-accepting receptor YPDSF_1789 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPDSF_1789 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPDSF_1789 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding YPDSF_1789 IPR003660 HAMP domain YPDSF_1790 IPR019717 Dextransucrase DSRB YPDSF_1791 IPR002059 Cold-shock protein, DNA-binding YPDSF_1791 IPR019844 Cold-shock (CSD) domain YPDSF_1791 IPR012340 Nucleic acid-binding, OB-fold YPDSF_1791 IPR012156 Cold shock, CspA YPDSF_1791 IPR011129 Cold shock domain YPDSF_1792 IPR004199 Beta galactosidase small chain/ domain 5 YPDSF_1792 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily YPDSF_1792 IPR011013 Galactose mutarotase-like domain superfamily YPDSF_1792 IPR023230 Glycoside hydrolase, family 2, conserved site YPDSF_1792 IPR013783 Immunoglobulin-like fold YPDSF_1792 IPR006104 Glycosyl hydrolases family 2, sugar binding domain YPDSF_1792 IPR008979 Galactose-binding-like domain superfamily YPDSF_1792 IPR017853 Glycoside hydrolase superfamily YPDSF_1792 IPR014718 Glycoside hydrolase-type carbohydrate-binding YPDSF_1792 IPR023232 Glycoside hydrolase, family 2, active site YPDSF_1792 IPR023933 Glycoside hydrolase, family 2, beta-galactosidase YPDSF_1792 IPR006103 Glycoside hydrolase family 2, catalytic domain YPDSF_1792 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich YPDSF_1792 IPR032312 Beta-galactosidase, domain 4 YPDSF_1792 IPR006101 Glycoside hydrolase, family 2 YPDSF_1793 IPR020806 Polyketide synthase, phosphopantetheine-binding domain YPDSF_1793 IPR013968 Polyketide synthase, ketoreductase domain YPDSF_1793 IPR016039 Thiolase-like YPDSF_1793 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPDSF_1793 IPR036736 ACP-like superfamily YPDSF_1793 IPR032821 Ketoacyl-synthetase, C-terminal extension YPDSF_1793 IPR013149 Alcohol dehydrogenase, C-terminal YPDSF_1793 IPR020807 Polyketide synthase, dehydratase domain YPDSF_1793 IPR042104 Polyketide synthase, dehydratase domain superfamily YPDSF_1793 IPR014043 Acyl transferase YPDSF_1793 IPR009081 Phosphopantetheine binding ACP domain YPDSF_1793 IPR013154 Alcohol dehydrogenase, N-terminal YPDSF_1793 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPDSF_1793 IPR018201 Beta-ketoacyl synthase, active site YPDSF_1793 IPR011032 GroES-like superfamily YPDSF_1793 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YPDSF_1793 IPR014031 Beta-ketoacyl synthase, C-terminal YPDSF_1793 IPR014030 Beta-ketoacyl synthase, N-terminal YPDSF_1793 IPR036291 NAD(P)-binding domain superfamily YPDSF_1793 IPR020843 Polyketide synthase, enoylreductase domain YPDSF_1794 IPR019713 Inner membrane protein YlaC YPDSF_1796 IPR011991 ArsR-like helix-turn-helix domain YPDSF_1796 IPR000485 AsnC-type HTH domain YPDSF_1796 IPR011008 Dimeric alpha-beta barrel YPDSF_1796 IPR019888 Transcription regulator AsnC-type YPDSF_1796 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_1796 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YPDSF_1796 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_1796 IPR019885 Transcription regulator HTH, AsnC-type, conserved site YPDSF_1798 IPR017704 Putative selenium-binding protein YdfZ YPDSF_1799 IPR033379 Histidine acid phosphatase active site YPDSF_1799 IPR000560 Histidine phosphatase superfamily, clade-2 YPDSF_1799 IPR029033 Histidine phosphatase superfamily YPDSF_1802 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_1802 IPR002577 Helix-turn-helix, HxlR type YPDSF_1802 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_1803 IPR008030 NmrA-like domain YPDSF_1803 IPR036291 NAD(P)-binding domain superfamily YPDSF_1804 IPR013655 PAS fold-3 YPDSF_1804 IPR004090 Chemotaxis methyl-accepting receptor YPDSF_1804 IPR003660 HAMP domain YPDSF_1804 IPR035965 PAS domain superfamily YPDSF_1804 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPDSF_1804 IPR000014 PAS domain YPDSF_1804 IPR001610 PAC motif YPDSF_1806 IPR028082 Periplasmic binding protein-like I YPDSF_1806 IPR000843 LacI-type HTH domain YPDSF_1806 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPDSF_1806 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPDSF_1807 IPR024084 Isopropylmalate dehydrogenase-like domain YPDSF_1807 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site YPDSF_1807 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic YPDSF_1808 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain YPDSF_1808 IPR006145 Pseudouridine synthase, RsuA/RluA YPDSF_1808 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F YPDSF_1808 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPDSF_1808 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site YPDSF_1809 IPR020476 NUDIX hydrolase YPDSF_1809 IPR020084 NUDIX hydrolase, conserved site YPDSF_1809 IPR033713 Phosphatase NudJ YPDSF_1809 IPR000086 NUDIX hydrolase domain YPDSF_1809 IPR015797 NUDIX hydrolase-like domain superfamily YPDSF_1810 IPR023382 Adenine nucleotide alpha hydrolase-like domains YPDSF_1810 IPR004506 tRNA-specific 2-thiouridylase YPDSF_1810 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_1811 IPR007451 High frequency lysogenization protein HflD YPDSF_1811 IPR035932 HflD-like superfamily YPDSF_1812 IPR024083 Fumarase/histidase, N-terminal YPDSF_1812 IPR022761 Fumarate lyase, N-terminal YPDSF_1812 IPR004769 Adenylosuccinate lyase YPDSF_1812 IPR020557 Fumarate lyase, conserved site YPDSF_1812 IPR000362 Fumarate lyase family YPDSF_1812 IPR008948 L-Aspartase-like YPDSF_1812 IPR013539 Adenylosuccinate lyase PurB, C-terminal YPDSF_1814 IPR039420 Transcriptional regulatory protein WalR-like YPDSF_1814 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_1814 IPR001867 OmpR/PhoB-type DNA-binding domain YPDSF_1814 IPR011006 CheY-like superfamily YPDSF_1814 IPR001789 Signal transduction response regulator, receiver domain YPDSF_1815 IPR038429 PhoQ Sensor superfamily YPDSF_1815 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPDSF_1815 IPR003594 Histidine kinase/HSP90-like ATPase YPDSF_1815 IPR003660 HAMP domain YPDSF_1815 IPR015014 PhoQ Sensor YPDSF_1815 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPDSF_1815 IPR005467 Histidine kinase domain YPDSF_1815 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_1816 IPR039994 JmjC domain-containing YPDSF_1816 IPR003347 JmjC domain YPDSF_1817 IPR010161 Peptidase M20B, tripeptide aminopeptidase YPDSF_1817 IPR011650 Peptidase M20, dimerisation domain YPDSF_1817 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YPDSF_1817 IPR036264 Bacterial exopeptidase dimerisation domain YPDSF_1817 IPR002933 Peptidase M20 YPDSF_1818 IPR003000 Sirtuin family YPDSF_1818 IPR027546 Sirtuin, class III YPDSF_1818 IPR026591 Sirtuin, catalytic core small domain superfamily YPDSF_1818 IPR026590 Sirtuin family, catalytic core domain YPDSF_1818 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPDSF_1819 IPR000600 ROK family YPDSF_1819 IPR023505 N-acetyl-D-glucosamine kinase YPDSF_1820 IPR000600 ROK family YPDSF_1821 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E YPDSF_1821 IPR003838 ABC transporter permease protein domain YPDSF_1821 IPR011926 Lipoprotein-releasing system transmembrane protein LolE, gammaproteobacteria type YPDSF_1821 IPR025857 MacB-like periplasmic core domain YPDSF_1822 IPR017871 ABC transporter, conserved site YPDSF_1822 IPR003439 ABC transporter-like YPDSF_1822 IPR015854 ABC transporter, lipoprotein release, LolD YPDSF_1822 IPR011924 Lipoprotein releasing system, ATP-binding protein YPDSF_1822 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1822 IPR003593 AAA+ ATPase domain YPDSF_1823 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E YPDSF_1823 IPR025857 MacB-like periplasmic core domain YPDSF_1823 IPR003838 ABC transporter permease protein domain YPDSF_1824 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1824 IPR004576 Transcription-repair coupling factor YPDSF_1824 IPR005118 Transcription-repair-coupling factor, C-terminal domain YPDSF_1824 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPDSF_1824 IPR011545 DEAD/DEAH box helicase domain YPDSF_1824 IPR003711 CarD-like/TRCF domain YPDSF_1824 IPR036101 CarD-like/TRCF domain superfamily YPDSF_1824 IPR041471 UvrB, interaction domain YPDSF_1824 IPR037235 TRCF-like, C-terminal domain YPDSF_1824 IPR001650 Helicase, C-terminal YPDSF_1825 IPR008816 Glycine zipper 2TM domain YPDSF_1826 IPR001207 Transposase, mutator type YPDSF_1830 IPR023753 FAD/NAD(P)-binding domain YPDSF_1830 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_1831 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA YPDSF_1831 IPR022987 Uncharacterised protein family UPF0227 YPDSF_1831 IPR029058 Alpha/Beta hydrolase fold YPDSF_1832 IPR022956 Beta-hexosaminidase, bacterial YPDSF_1832 IPR019800 Glycoside hydrolase, family 3, active site YPDSF_1832 IPR001764 Glycoside hydrolase, family 3, N-terminal YPDSF_1832 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily YPDSF_1832 IPR017853 Glycoside hydrolase superfamily YPDSF_1833 IPR011009 Protein kinase-like domain superfamily YPDSF_1833 IPR002575 Aminoglycoside phosphotransferase YPDSF_1833 IPR014093 Thiamine kinase YPDSF_1834 IPR012640 Membrane lipoprotein, lipid attachment site YPDSF_1834 IPR014094 Penicillin-binding protein activator LpoB YPDSF_1835 IPR038483 YcfL-like superfamily YPDSF_1835 IPR010824 Protein of unknown function DUF1425 YPDSF_1836 IPR001310 Histidine triad (HIT) protein YPDSF_1836 IPR019808 Histidine triad, conserved site YPDSF_1836 IPR036265 HIT-like superfamily YPDSF_1836 IPR011146 HIT-like domain YPDSF_1837 IPR036291 NAD(P)-binding domain superfamily YPDSF_1837 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal YPDSF_1839 IPR011299 PTS system glucose-specific IIBC component YPDSF_1839 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component YPDSF_1839 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site YPDSF_1839 IPR013013 Phosphotransferase system, EIIC component, type 1 YPDSF_1839 IPR003352 Phosphotransferase system, EIIC YPDSF_1839 IPR001996 Phosphotransferase system, IIB component, type 1 YPDSF_1839 IPR036878 Glucose permease domain IIB YPDSF_1840 IPR018228 Deoxyribonuclease, TatD-related, conserved site YPDSF_1840 IPR001130 TatD family YPDSF_1840 IPR032466 Metal-dependent hydrolase YPDSF_1840 IPR015991 Uncharacterised hydrolase TatD-type YPDSF_1841 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YPDSF_1841 IPR004622 DNA polymerase III, delta prime subunit YPDSF_1841 IPR015199 DNA polymerase III, delta subunit, C-terminal YPDSF_1841 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1842 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1842 IPR018094 Thymidylate kinase YPDSF_1842 IPR039430 Thymidylate kinase-like domain YPDSF_1842 IPR018095 Thymidylate kinase, conserved site YPDSF_1843 IPR003770 Endolytic murein transglycosylase YPDSF_1844 IPR017824 Aminodeoxychorismate lyase, class IV YPDSF_1844 IPR001544 Aminotransferase class IV YPDSF_1844 IPR036038 Aminotransferase-like, PLP-dependent enzymes YPDSF_1844 IPR018300 Aminotransferase, class IV, conserved site YPDSF_1845 IPR002686 Transposase IS200-like YPDSF_1845 IPR036515 Transposase IS200-like superfamily YPDSF_1846 IPR000794 Beta-ketoacyl synthase YPDSF_1846 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPDSF_1846 IPR018201 Beta-ketoacyl synthase, active site YPDSF_1846 IPR014031 Beta-ketoacyl synthase, C-terminal YPDSF_1846 IPR014030 Beta-ketoacyl synthase, N-terminal YPDSF_1846 IPR016039 Thiolase-like YPDSF_1846 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 YPDSF_1847 IPR009081 Phosphopantetheine binding ACP domain YPDSF_1847 IPR036736 ACP-like superfamily YPDSF_1847 IPR006162 Phosphopantetheine attachment site YPDSF_1847 IPR003231 Acyl carrier protein (ACP) YPDSF_1848 IPR036291 NAD(P)-binding domain superfamily YPDSF_1848 IPR002347 Short-chain dehydrogenase/reductase SDR YPDSF_1848 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase YPDSF_1848 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPDSF_1849 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type YPDSF_1849 IPR024925 Malonyl CoA-acyl carrier protein transacylase YPDSF_1849 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPDSF_1849 IPR014043 Acyl transferase YPDSF_1849 IPR001227 Acyl transferase domain superfamily YPDSF_1849 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YPDSF_1850 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPDSF_1850 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal YPDSF_1850 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 YPDSF_1850 IPR016039 Thiolase-like YPDSF_1851 IPR003664 Fatty acid synthesis PlsX protein YPDSF_1851 IPR012281 Phospholipid biosynthesis protein, PlsX-like YPDSF_1852 IPR011332 Zinc-binding ribosomal protein YPDSF_1852 IPR002677 Ribosomal protein L32p YPDSF_1853 IPR039255 Large ribosomal RNA subunit accumulation protein YceD, bacteria YPDSF_1853 IPR003772 Large ribosomal RNA subunit accumulation protein YceD YPDSF_1854 IPR029001 Inosine triphosphate pyrophosphatase-like YPDSF_1854 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein YPDSF_1855 IPR006225 Pseudouridine synthase, RluC/RluD YPDSF_1855 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPDSF_1855 IPR002942 RNA-binding S4 domain YPDSF_1855 IPR036986 RNA-binding S4 domain superfamily YPDSF_1855 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YPDSF_1855 IPR006145 Pseudouridine synthase, RsuA/RluA YPDSF_1856 IPR028878 Ribonuclease E YPDSF_1856 IPR022967 RNA-binding domain, S1 YPDSF_1856 IPR004659 Ribonuclease E/G YPDSF_1856 IPR012340 Nucleic acid-binding, OB-fold YPDSF_1856 IPR021968 Polyribonucleotide phosphorylase C-terminal YPDSF_1856 IPR003029 S1 domain YPDSF_1856 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G YPDSF_1858 IPR007138 Antibiotic biosynthesis monooxygenase domain YPDSF_1858 IPR011008 Dimeric alpha-beta barrel YPDSF_1859 IPR002195 Dihydroorotase, conserved site YPDSF_1859 IPR032466 Metal-dependent hydrolase YPDSF_1859 IPR004721 Dihydroorotase homodimeric type YPDSF_1859 IPR006680 Amidohydrolase-related YPDSF_1860 IPR010391 DNA damage-inducible protein DinI-like YPDSF_1860 IPR036687 DinI-like superfamily YPDSF_1861 IPR025730 Biofilm regulator BssS YPDSF_1862 IPR001207 Transposase, mutator type YPDSF_1863 IPR023493 N-methyl-L-tryptophan oxidase MTOX YPDSF_1863 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_1863 IPR006076 FAD dependent oxidoreductase YPDSF_1864 IPR016032 Signal transduction response regulator, C-terminal effector YPDSF_1864 IPR001789 Signal transduction response regulator, receiver domain YPDSF_1864 IPR000792 Transcription regulator LuxR, C-terminal YPDSF_1865 IPR002549 Transmembrane protein TqsA-like YPDSF_1871 IPR016181 Acyl-CoA N-acyltransferase YPDSF_1871 IPR018311 Autoinducer synthesis, conserved site YPDSF_1871 IPR001690 Autoinducer synthase YPDSF_1872 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_1872 IPR000792 Transcription regulator LuxR, C-terminal YPDSF_1872 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily YPDSF_1872 IPR016032 Signal transduction response regulator, C-terminal effector YPDSF_1872 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain YPDSF_1873 IPR005119 LysR, substrate-binding YPDSF_1873 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_1873 IPR000847 Transcription regulator HTH, LysR YPDSF_1873 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_1874 IPR005828 Major facilitator, sugar transporter-like YPDSF_1874 IPR020846 Major facilitator superfamily domain YPDSF_1874 IPR005829 Sugar transporter, conserved site YPDSF_1874 IPR036259 MFS transporter superfamily YPDSF_1876 IPR023210 NADP-dependent oxidoreductase domain YPDSF_1876 IPR020471 Aldo/keto reductase YPDSF_1876 IPR036812 NADP-dependent oxidoreductase domain superfamily YPDSF_1877 IPR013396 CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST YPDSF_1878 IPR013399 CRISPR-associated protein Csy3 YPDSF_1879 IPR013398 CRISPR-associated protein Csy2 YPDSF_1880 IPR013397 CRISPR-associated protein Csy1 YPDSF_1881 IPR038257 CRISPR-associated Cas3-type HD domain superfamily YPDSF_1881 IPR013395 Helicase Cas3, CRISPR-associated, Yersinia-type YPDSF_1881 IPR006483 CRISPR-associated Cas3-type HD domain YPDSF_1881 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1882 IPR002729 CRISPR-associated protein Cas1 YPDSF_1882 IPR019857 CRISPR-associated protein Cas1, YPEST subtype YPDSF_1882 IPR042211 CRISPR-associated endonuclease Cas1, N-terminal domain YPDSF_1882 IPR042206 CRISPR-associated endonuclease Cas1, C-terminal domain YPDSF_1883 IPR011066 Mechanosensitive ion channel MscS, C-terminal YPDSF_1883 IPR010920 LSM domain superfamily YPDSF_1883 IPR030192 Miniconductance mechanosensitive channel YbdG YPDSF_1883 IPR006685 Mechanosensitive ion channel MscS YPDSF_1887 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily YPDSF_1887 IPR028583 4-O-beta-D-mannosyl-D-glucose phosphorylase YPDSF_1887 IPR007184 Mannoside phosphorylase YPDSF_1888 IPR035906 MetI-like superfamily YPDSF_1888 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_1889 IPR035906 MetI-like superfamily YPDSF_1889 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_1891 IPR028082 Periplasmic binding protein-like I YPDSF_1891 IPR000843 LacI-type HTH domain YPDSF_1891 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPDSF_1892 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YPDSF_1892 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YPDSF_1892 IPR005843 Alpha-D-phosphohexomutase, C-terminal YPDSF_1892 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily YPDSF_1892 IPR016066 Alpha-D-phosphohexomutase, conserved site YPDSF_1892 IPR005841 Alpha-D-phosphohexomutase superfamily YPDSF_1892 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YPDSF_1892 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YPDSF_1893 IPR017871 ABC transporter, conserved site YPDSF_1893 IPR015855 ABC transporter, maltose/maltodextrin import, MalK YPDSF_1893 IPR040582 MalK, OB fold domain YPDSF_1893 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1893 IPR003593 AAA+ ATPase domain YPDSF_1893 IPR003439 ABC transporter-like YPDSF_1893 IPR008995 Molybdate/tungstate binding, C-terminal YPDSF_1896 IPR008619 Filamentous haemagglutinin repeat YPDSF_1896 IPR008638 Filamentous haemagglutinin, N-terminal YPDSF_1896 IPR025157 Hemagglutinin repeat YPDSF_1896 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPDSF_1896 IPR028190 Novel toxin 21 YPDSF_1896 IPR038181 Novel toxin 21 superfamily YPDSF_1896 IPR012334 Pectin lyase fold YPDSF_1896 IPR011050 Pectin lyase fold/virulence factor YPDSF_1896 IPR006914 VENN motif-containing domain YPDSF_1899 IPR024973 ESPR domain YPDSF_1899 IPR025157 Hemagglutinin repeat YPDSF_1899 IPR008638 Filamentous haemagglutinin, N-terminal YPDSF_1899 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPDSF_1899 IPR006914 VENN motif-containing domain YPDSF_1899 IPR011050 Pectin lyase fold/virulence factor YPDSF_1899 IPR012334 Pectin lyase fold YPDSF_1902 IPR012334 Pectin lyase fold YPDSF_1902 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPDSF_1902 IPR008638 Filamentous haemagglutinin, N-terminal YPDSF_1902 IPR006914 VENN motif-containing domain YPDSF_1902 IPR024973 ESPR domain YPDSF_1902 IPR025157 Hemagglutinin repeat YPDSF_1902 IPR011050 Pectin lyase fold/virulence factor YPDSF_1903 IPR013686 Polypeptide-transport-associated, ShlB-type YPDSF_1903 IPR005565 Haemolysin activator HlyB, C-terminal YPDSF_1903 IPR034746 POTRA domain YPDSF_1903 IPR027282 Two partner secretion pathway transporter YPDSF_1903 IPR035251 ShlB, POTRA domain YPDSF_1904 IPR036010 2Fe-2S ferredoxin-like superfamily YPDSF_1904 IPR017938 Riboflavin synthase-like beta-barrel YPDSF_1904 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPDSF_1904 IPR012675 Beta-grasp domain superfamily YPDSF_1904 IPR000951 Phthalate dioxygenase reductase YPDSF_1904 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPDSF_1904 IPR017927 FAD-binding domain, ferredoxin reductase-type YPDSF_1904 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPDSF_1904 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPDSF_1904 IPR039003 Carnitine monooxygenase reductase subunit YPDSF_1904 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPDSF_1905 IPR039004 Carnitine monooxygenase oxygenase subunit YPDSF_1905 IPR017941 Rieske [2Fe-2S] iron-sulphur domain YPDSF_1905 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily YPDSF_1905 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site YPDSF_1905 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain YPDSF_1905 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit YPDSF_1906 IPR018093 BCCT transporter, conserved site YPDSF_1906 IPR000060 BCCT transporter family YPDSF_1907 IPR024084 Isopropylmalate dehydrogenase-like domain YPDSF_1907 IPR011829 Tartrate dehydrogenase YPDSF_1907 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site YPDSF_1908 IPR005119 LysR, substrate-binding YPDSF_1908 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_1908 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_1908 IPR000847 Transcription regulator HTH, LysR YPDSF_1909 IPR028082 Periplasmic binding protein-like I YPDSF_1909 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPDSF_1909 IPR000843 LacI-type HTH domain YPDSF_1910 IPR001851 ABC transporter, permease YPDSF_1913 IPR025997 Periplasmic binding protein YPDSF_1913 IPR028082 Periplasmic binding protein-like I YPDSF_1914 IPR013149 Alcohol dehydrogenase, C-terminal YPDSF_1914 IPR036291 NAD(P)-binding domain superfamily YPDSF_1914 IPR011032 GroES-like superfamily YPDSF_1914 IPR020843 Polyketide synthase, enoylreductase domain YPDSF_1914 IPR013154 Alcohol dehydrogenase, N-terminal YPDSF_1918 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPDSF_1918 IPR027385 Outer membrane protein beta-barrel domain YPDSF_1918 IPR000758 Virulence-related outer membrane protein YPDSF_1919 IPR000620 EamA domain YPDSF_1921 IPR041698 Methyltransferase domain 25 YPDSF_1921 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_1921 IPR023506 Trans-aconitate 2-methyltransferase YPDSF_1921 IPR023149 Trans-aconitate 2-methyltransferase, C-terminal YPDSF_1922 IPR023067 DNA protection during starvation protein, gammaproteobacteria YPDSF_1922 IPR023188 DNA-binding protein Dps, conserved site YPDSF_1922 IPR009078 Ferritin-like superfamily YPDSF_1922 IPR008331 Ferritin/DPS protein domain YPDSF_1922 IPR002177 DNA-binding protein Dps YPDSF_1922 IPR012347 Ferritin-like YPDSF_1924 IPR018313 Solute-binding protein family 3, conserved site YPDSF_1924 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPDSF_1924 IPR001320 Ionotropic glutamate receptor YPDSF_1925 IPR035906 MetI-like superfamily YPDSF_1925 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_1925 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPDSF_1926 IPR003593 AAA+ ATPase domain YPDSF_1926 IPR017871 ABC transporter, conserved site YPDSF_1926 IPR003439 ABC transporter-like YPDSF_1926 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type YPDSF_1926 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1927 IPR001610 PAC motif YPDSF_1927 IPR000700 PAS-associated, C-terminal YPDSF_1927 IPR035965 PAS domain superfamily YPDSF_1927 IPR013655 PAS fold-3 YPDSF_1927 IPR000014 PAS domain YPDSF_1927 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPDSF_1927 IPR004090 Chemotaxis methyl-accepting receptor YPDSF_1929 IPR016909 Ribosomal RNA large subunit methyltransferase F YPDSF_1929 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_1929 IPR010286 METTL16/RlmF family YPDSF_1930 IPR036275 YdgH-like superfamily YPDSF_1930 IPR010854 Domain of unknown function DUF1471 YPDSF_1930 IPR025543 Dodecin-like YPDSF_1932 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily YPDSF_1932 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily YPDSF_1932 IPR017459 Glycosyl transferase family 3, N-terminal domain YPDSF_1933 IPR010192 2-succinylbenzoate--CoA ligase YPDSF_1933 IPR025110 AMP-binding enzyme, C-terminal domain YPDSF_1933 IPR000873 AMP-dependent synthetase/ligase YPDSF_1933 IPR020845 AMP-binding, conserved site YPDSF_1933 IPR042099 AMP-dependent synthetase-like superfamily YPDSF_1934 IPR029017 Enolase-like, N-terminal YPDSF_1934 IPR029065 Enolase C-terminal domain-like YPDSF_1934 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal YPDSF_1934 IPR010196 o-Succinylbenzoate synthase, MenC type1 YPDSF_1934 IPR036849 Enolase-like, C-terminal domain superfamily YPDSF_1935 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB YPDSF_1935 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site YPDSF_1935 IPR001753 Enoyl-CoA hydratase/isomerase YPDSF_1935 IPR029045 ClpP/crotonase-like domain superfamily YPDSF_1935 IPR014748 Enoyl-CoA hydratase, C-terminal YPDSF_1936 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase YPDSF_1936 IPR000073 Alpha/beta hydrolase fold-1 YPDSF_1936 IPR029058 Alpha/Beta hydrolase fold YPDSF_1937 IPR032264 Menaquinone biosynthesis protein MenD, middle domain YPDSF_1937 IPR029061 Thiamin diphosphate-binding fold YPDSF_1937 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPDSF_1937 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPDSF_1937 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase YPDSF_1938 IPR005801 ADC synthase YPDSF_1938 IPR015890 Chorismate-utilising enzyme, C-terminal YPDSF_1938 IPR004561 Isochorismate synthase YPDSF_1938 IPR034681 Isochorismate synthase MenF YPDSF_1940 IPR010279 Inner membrane protein YqjD/ElaB YPDSF_1943 IPR004786 6-phosphogluconate dehydratase YPDSF_1943 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase YPDSF_1943 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site YPDSF_1943 IPR037237 IlvD/EDD, N-terminal domain YPDSF_1943 IPR042096 Dihydroxy-acid dehydratase, C-terminal YPDSF_1944 IPR038084 GlcG-like domain superfamily YPDSF_1944 IPR005624 Haem-degrading YPDSF_1944 IPR010371 Uncharacterised protein family UPF0303 YPDSF_1945 IPR036259 MFS transporter superfamily YPDSF_1945 IPR011701 Major facilitator superfamily YPDSF_1945 IPR020846 Major facilitator superfamily domain YPDSF_1946 IPR036291 NAD(P)-binding domain superfamily YPDSF_1946 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPDSF_1946 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPDSF_1947 IPR028082 Periplasmic binding protein-like I YPDSF_1947 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPDSF_1947 IPR000843 LacI-type HTH domain YPDSF_1949 IPR036291 NAD(P)-binding domain superfamily YPDSF_1949 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPDSF_1949 IPR002347 Short-chain dehydrogenase/reductase SDR YPDSF_1950 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1950 IPR031322 Shikimate kinase/gluconokinase YPDSF_1950 IPR006001 Carbohydrate kinase, thermoresistant glucokinase YPDSF_1951 IPR004375 YhcH/YjgK/YiaL family YPDSF_1951 IPR037012 YhcH/YjgK/YiaL superfamily YPDSF_1953 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 YPDSF_1953 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit YPDSF_1954 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit YPDSF_1954 IPR010227 NADH-quinone oxidoreductase, chain M/4 YPDSF_1954 IPR003918 NADH:ubiquinone oxidoreductase YPDSF_1955 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal YPDSF_1955 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 YPDSF_1955 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup YPDSF_1955 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit YPDSF_1956 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like YPDSF_1956 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K YPDSF_1957 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 YPDSF_1957 IPR042106 NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ YPDSF_1958 IPR010226 NADH-quinone oxidoreductase, chain I YPDSF_1958 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPDSF_1958 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPDSF_1959 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H YPDSF_1959 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site YPDSF_1960 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPDSF_1960 IPR036010 2Fe-2S ferredoxin-like superfamily YPDSF_1960 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPDSF_1960 IPR009010 Aspartate decarboxylase-like domain superfamily YPDSF_1960 IPR006657 Molybdopterin dinucleotide-binding domain YPDSF_1960 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site YPDSF_1960 IPR010228 NADH:ubiquinone oxidoreductase, subunit G YPDSF_1960 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding YPDSF_1960 IPR006656 Molybdopterin oxidoreductase YPDSF_1961 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily YPDSF_1961 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily YPDSF_1961 IPR011537 NADH ubiquinone oxidoreductase, F subunit YPDSF_1961 IPR019554 Soluble ligand binding domain YPDSF_1961 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain YPDSF_1961 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site YPDSF_1961 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain YPDSF_1962 IPR036249 Thioredoxin-like superfamily YPDSF_1962 IPR041921 NADH-quinone oxidoreductase subunit E, N-terminal YPDSF_1962 IPR042128 NuoE domain YPDSF_1962 IPR002023 NADH-quinone oxidoreductase subunit E-like YPDSF_1963 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H YPDSF_1963 IPR010218 NADH dehydrogenase, subunit C YPDSF_1963 IPR023062 NADH dehydrogenase, subunit CD YPDSF_1963 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily YPDSF_1963 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily YPDSF_1963 IPR029014 [NiFe]-hydrogenase, large subunit YPDSF_1963 IPR001135 NADH-quinone oxidoreductase, subunit D YPDSF_1963 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site YPDSF_1963 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit YPDSF_1964 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit YPDSF_1964 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit YPDSF_1965 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid YPDSF_1965 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily YPDSF_1965 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 YPDSF_1966 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_1966 IPR005119 LysR, substrate-binding YPDSF_1966 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_1966 IPR000847 Transcription regulator HTH, LysR YPDSF_1967 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_1967 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_1967 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_1967 IPR004839 Aminotransferase, class I/classII YPDSF_1968 IPR003607 HD/PDEase domain YPDSF_1968 IPR039356 Metal-dependent nucleoside 5'-monophosphatase YPDSF_1968 IPR022971 5'-deoxynucleotidase YfbR YPDSF_1969 IPR004680 Citrate transporter-like domain YPDSF_1969 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily YPDSF_1969 IPR031312 Sodium/sulphate symporter, conserved site YPDSF_1969 IPR006037 Regulator of K+ conductance, C-terminal YPDSF_1970 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPDSF_1970 IPR023214 HAD superfamily YPDSF_1970 IPR041492 Haloacid dehalogenase-like hydrolase YPDSF_1970 IPR006439 HAD hydrolase, subfamily IA YPDSF_1970 IPR036412 HAD-like superfamily YPDSF_1971 IPR005587 Uncharacterised protein family UPF0304, YfbU YPDSF_1971 IPR023146 YfbU, alpha-helical bundle domain superfamily YPDSF_1971 IPR023145 YfbU, helix-hairpin domain superfamily YPDSF_1972 IPR007334 Uncharacterised protein family UPF0208 YPDSF_1973 IPR000890 Aliphatic acid kinase, short-chain YPDSF_1973 IPR004372 Acetate/propionate kinase YPDSF_1973 IPR023865 Aliphatic acid kinase, short-chain, conserved site YPDSF_1974 IPR010766 DRTGG YPDSF_1974 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily YPDSF_1974 IPR042112 Phosphate acetyltransferase, domain 2 YPDSF_1974 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1974 IPR002505 Phosphate acetyl/butaryl transferase YPDSF_1974 IPR042113 Phosphate acetyltransferase, domain 1 YPDSF_1974 IPR004614 Phosphate acetyltransferase YPDSF_1974 IPR016475 Phosphate acetyltransferase, bacteria YPDSF_1975 IPR000843 LacI-type HTH domain YPDSF_1975 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPDSF_1975 IPR028082 Periplasmic binding protein-like I YPDSF_1975 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPDSF_1976 IPR016152 Phosphotransferase/anion transporter YPDSF_1976 IPR002178 PTS EIIA type-2 domain YPDSF_1978 IPR004703 Phosphotransferase system, sugar-specific permease component YPDSF_1979 IPR000086 NUDIX hydrolase domain YPDSF_1979 IPR024195 NUDIX hydrolase, YfcD, predicted YPDSF_1979 IPR015797 NUDIX hydrolase-like domain superfamily YPDSF_1983 IPR010099 Epimerase family protein SDR39U1 YPDSF_1983 IPR036291 NAD(P)-binding domain superfamily YPDSF_1983 IPR013549 Domain of unknown function DUF1731 YPDSF_1983 IPR001509 NAD-dependent epimerase/dehydratase YPDSF_1984 IPR003439 ABC transporter-like YPDSF_1984 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type YPDSF_1984 IPR017871 ABC transporter, conserved site YPDSF_1984 IPR003593 AAA+ ATPase domain YPDSF_1984 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_1985 IPR035906 MetI-like superfamily YPDSF_1985 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_1985 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPDSF_1986 IPR030199 Histidine transport system permease protein HisQ YPDSF_1986 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPDSF_1986 IPR035906 MetI-like superfamily YPDSF_1986 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_1987 IPR018313 Solute-binding protein family 3, conserved site YPDSF_1987 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPDSF_1987 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YPDSF_1988 IPR004507 Flavin prenyltransferase UbiX-like YPDSF_1988 IPR003382 Flavoprotein YPDSF_1988 IPR036551 Flavin prenyltransferase-like YPDSF_1989 IPR017932 Glutamine amidotransferase type 2 domain YPDSF_1989 IPR029057 Phosphoribosyltransferase-like YPDSF_1989 IPR035584 Amidophosphoribosyltransferase, N-terminal YPDSF_1989 IPR005854 Amidophosphoribosyltransferase YPDSF_1989 IPR000836 Phosphoribosyltransferase domain YPDSF_1989 IPR029055 Nucleophile aminohydrolases, N-terminal YPDSF_1990 IPR003825 Colicin V production, CvpA YPDSF_1991 IPR007730 Sporulation-like domain YPDSF_1991 IPR032898 Cell division protein DedD YPDSF_1991 IPR036680 Sporulation-like domain superfamily YPDSF_1992 IPR036565 Mur-like, catalytic domain superfamily YPDSF_1992 IPR001645 Folylpolyglutamate synthetase YPDSF_1992 IPR036615 Mur ligase, C-terminal domain superfamily YPDSF_1992 IPR013221 Mur ligase, central YPDSF_1992 IPR004101 Mur ligase, C-terminal YPDSF_1992 IPR018109 Folylpolyglutamate synthetase, conserved site YPDSF_1993 IPR029045 ClpP/crotonase-like domain superfamily YPDSF_1993 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit YPDSF_1993 IPR034733 Acetyl-CoA carboxylase YPDSF_1993 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal YPDSF_1993 IPR041010 Acetyl-coA carboxylase zinc finger domain YPDSF_1994 IPR032818 DedA family YPDSF_1994 IPR032816 SNARE associated Golgi protein YPDSF_1995 IPR001406 Pseudouridine synthase I, TruA YPDSF_1995 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain YPDSF_1995 IPR020095 Pseudouridine synthase I, TruA, C-terminal YPDSF_1995 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPDSF_1996 IPR000534 Semialdehyde dehydrogenase, NAD-binding YPDSF_1996 IPR036291 NAD(P)-binding domain superfamily YPDSF_1996 IPR012280 Semialdehyde dehydrogenase, dimerisation domain YPDSF_1997 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPDSF_1997 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPDSF_1997 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPDSF_1997 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain YPDSF_1997 IPR020921 Erythronate-4-phosphate dehydrogenase YPDSF_1997 IPR038251 PdxB, dimerisation domain superfamily YPDSF_1997 IPR036291 NAD(P)-binding domain superfamily YPDSF_1997 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPDSF_1999 IPR000620 EamA domain YPDSF_2000 IPR023597 Flagellar regulator Flk YPDSF_2001 IPR008966 Adhesion domain superfamily YPDSF_2001 IPR036937 Fimbrial-type adhesion domain superfamily YPDSF_2001 IPR000259 Fimbrial-type adhesion domain YPDSF_2002 IPR018187 Asp/Glu racemase, active site 1 YPDSF_2002 IPR001920 Asp/Glu racemase YPDSF_2002 IPR015942 Asp/Glu/hydantoin racemase YPDSF_2002 IPR033134 Asp/Glu racemase, active site 2 YPDSF_2002 IPR004380 Aspartate racemase YPDSF_2003 IPR000794 Beta-ketoacyl synthase YPDSF_2003 IPR016039 Thiolase-like YPDSF_2003 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPDSF_2003 IPR018201 Beta-ketoacyl synthase, active site YPDSF_2003 IPR014031 Beta-ketoacyl synthase, C-terminal YPDSF_2003 IPR014030 Beta-ketoacyl synthase, N-terminal YPDSF_2004 IPR006076 FAD dependent oxidoreductase YPDSF_2004 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal YPDSF_2004 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC YPDSF_2004 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_2004 IPR008471 MnmC-like methyltransferase YPDSF_2004 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_2005 IPR014987 Uncharacterised protein family YfcL YPDSF_2006 IPR007411 Elongation factor P hydroxylase YPDSF_2007 IPR002781 Transmembrane protein TauE-like YPDSF_2008 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily YPDSF_2008 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase YPDSF_2009 IPR000453 Chorismate synthase YPDSF_2009 IPR035904 Chorismate synthase AroC superfamily YPDSF_2009 IPR020541 Chorismate synthase, conserved site YPDSF_2010 IPR004556 Methyltransferase HemK-like YPDSF_2010 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPDSF_2010 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase YPDSF_2010 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_2010 IPR007848 Methyltransferase small domain YPDSF_2011 IPR022990 Uncharacterised protein family UPF0115 YPDSF_2011 IPR036063 Smr domain superfamily YPDSF_2011 IPR002625 Smr domain YPDSF_2012 IPR013078 Histidine phosphatase superfamily, clade-1 YPDSF_2012 IPR004449 Phosphohistidine phosphatase SixA YPDSF_2012 IPR029033 Histidine phosphatase superfamily YPDSF_2013 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal YPDSF_2013 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site YPDSF_2013 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPDSF_2013 IPR029045 ClpP/crotonase-like domain superfamily YPDSF_2013 IPR001753 Enoyl-CoA hydratase/isomerase YPDSF_2013 IPR036291 NAD(P)-binding domain superfamily YPDSF_2013 IPR012802 Fatty oxidation complex, alpha subunit FadJ YPDSF_2013 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding YPDSF_2014 IPR012806 Acetyl-CoA C-acyltransferase FadI YPDSF_2014 IPR002155 Thiolase YPDSF_2014 IPR016039 Thiolase-like YPDSF_2014 IPR020615 Thiolase, acyl-enzyme intermediate active site YPDSF_2014 IPR020610 Thiolase, active site YPDSF_2014 IPR020617 Thiolase, C-terminal YPDSF_2014 IPR020613 Thiolase, conserved site YPDSF_2014 IPR020616 Thiolase, N-terminal YPDSF_2015 IPR035571 UPF0234-like, C-terminal YPDSF_2015 IPR005272 Conserved hypothetical protein CHP00743 YPDSF_2016 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) YPDSF_2016 IPR042117 OMPP1/FadL/TodX superfamily YPDSF_2017 IPR007428 MlaA lipoprotein YPDSF_2018 IPR019734 Tetratricopeptide repeat YPDSF_2018 IPR005616 CcmH/CycL/Ccl2/NrfF family YPDSF_2018 IPR013026 Tetratricopeptide repeat-containing domain YPDSF_2018 IPR011990 Tetratricopeptide-like helical domain superfamily YPDSF_2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily YPDSF_2019 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily YPDSF_2019 IPR013026 Tetratricopeptide repeat-containing domain YPDSF_2019 IPR019734 Tetratricopeptide repeat YPDSF_2019 IPR005616 CcmH/CycL/Ccl2/NrfF family YPDSF_2019 IPR011990 Tetratricopeptide-like helical domain superfamily YPDSF_2020 IPR013766 Thioredoxin domain YPDSF_2020 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE YPDSF_2020 IPR013740 Redoxin YPDSF_2020 IPR017937 Thioredoxin, conserved site YPDSF_2020 IPR036249 Thioredoxin-like superfamily YPDSF_2021 IPR003568 Cytochrome c-type biogenesis protein CcmF YPDSF_2021 IPR003567 Cytochrome c-type biogenesis protein YPDSF_2021 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal YPDSF_2021 IPR002541 Cytochrome c assembly protein YPDSF_2022 IPR036127 CcmE-like superfamily YPDSF_2022 IPR004329 CcmE/CycJ protein YPDSF_2023 IPR007078 Haem exporter protein D (CcmD) YPDSF_2024 IPR003557 Cytochrome c-type biogenesis protein CcmC YPDSF_2024 IPR002541 Cytochrome c assembly protein YPDSF_2025 IPR003544 Cytochrome c-type biogenesis protein CcmB YPDSF_2025 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria YPDSF_2026 IPR003593 AAA+ ATPase domain YPDSF_2026 IPR017871 ABC transporter, conserved site YPDSF_2026 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2026 IPR005895 ABC transporter, haem export, CcmA YPDSF_2026 IPR003439 ABC transporter-like YPDSF_2028 IPR007156 LemA YPDSF_2028 IPR023353 LemA-like domain superfamily YPDSF_2030 IPR013988 PhnA protein, C-terminal YPDSF_2030 IPR004624 PhnA protein YPDSF_2030 IPR013987 PhnA protein, N-terminal YPDSF_2036 IPR006531 Gp5 N-terminal YPDSF_2036 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPDSF_2036 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPDSF_2036 IPR037026 Vgr protein, OB-fold domain superfamily YPDSF_2040 IPR003593 AAA+ ATPase domain YPDSF_2040 IPR001270 ClpA/B family YPDSF_2040 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_2040 IPR002611 IstB-like ATP-binding protein YPDSF_2040 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2041 IPR017894 HTH domain, IS21 transposase-type YPDSF_2041 IPR012337 Ribonuclease H-like superfamily YPDSF_2041 IPR006120 Resolvase, HTH domain YPDSF_2041 IPR036397 Ribonuclease H superfamily YPDSF_2041 IPR001584 Integrase, catalytic core YPDSF_2049 IPR025885 PapC, N-terminal domain YPDSF_2049 IPR025949 PapC-like, C-terminal domain YPDSF_2049 IPR042186 Outer membrane usher protein FimD, plug domain YPDSF_2049 IPR000015 Outer membrane usher protein YPDSF_2049 IPR018030 Fimbrial membrane usher, conserved site YPDSF_2049 IPR037224 PapC, N-terminal domain superfamily YPDSF_2050 IPR001207 Transposase, mutator type YPDSF_2051 IPR025949 PapC-like, C-terminal domain YPDSF_2051 IPR042186 Outer membrane usher protein FimD, plug domain YPDSF_2051 IPR025885 PapC, N-terminal domain YPDSF_2051 IPR000015 Outer membrane usher protein YPDSF_2051 IPR018030 Fimbrial membrane usher, conserved site YPDSF_2051 IPR037224 PapC, N-terminal domain superfamily YPDSF_2052 IPR016147 Pili assembly chaperone, N-terminal YPDSF_2052 IPR013783 Immunoglobulin-like fold YPDSF_2052 IPR008962 PapD-like superfamily YPDSF_2052 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPDSF_2052 IPR001829 Pili assembly chaperone, bacterial YPDSF_2052 IPR016148 Pili assembly chaperone, C-terminal YPDSF_2052 IPR018046 Pili assembly chaperone, conserved site YPDSF_2053 IPR008966 Adhesion domain superfamily YPDSF_2053 IPR036937 Fimbrial-type adhesion domain superfamily YPDSF_2053 IPR039458 FimA-like YPDSF_2054 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2054 IPR003593 AAA+ ATPase domain YPDSF_2054 IPR003959 ATPase, AAA-type, core YPDSF_2054 IPR017729 Type VI secretion system, ATPase ClpV1 YPDSF_2054 IPR019489 Clp ATPase, C-terminal YPDSF_2054 IPR036628 Clp, N-terminal domain superfamily YPDSF_2054 IPR004176 Clp, N-terminal YPDSF_2054 IPR001270 ClpA/B family YPDSF_2054 IPR018368 ClpA/B, conserved site 1 YPDSF_2054 IPR028299 ClpA/B, conserved site 2 YPDSF_2054 IPR041546 ClpA/ClpB, AAA lid domain YPDSF_2065 IPR011757 Lytic transglycosylase MltB YPDSF_2065 IPR031304 Transglycosylase SLT domain 2 YPDSF_2065 IPR023346 Lysozyme-like domain superfamily YPDSF_2066 IPR026045 Ferric binding protein YPDSF_2066 IPR006061 Solute-binding family 1, conserved site YPDSF_2067 IPR035906 MetI-like superfamily YPDSF_2067 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_2068 IPR003593 AAA+ ATPase domain YPDSF_2068 IPR003439 ABC transporter-like YPDSF_2068 IPR017871 ABC transporter, conserved site YPDSF_2068 IPR015853 ABC transporter, ferric cation import, FbpC YPDSF_2068 IPR030287 Fe(3+) ions import ATP-binding protein FbpC YPDSF_2068 IPR008995 Molybdate/tungstate binding, C-terminal YPDSF_2068 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2070 IPR036624 Hcp1-like superfamily YPDSF_2070 IPR008514 Type VI secretion system effector, Hcp YPDSF_2072 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPDSF_2072 IPR006656 Molybdopterin oxidoreductase YPDSF_2072 IPR009010 Aspartate decarboxylase-like domain superfamily YPDSF_2072 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE YPDSF_2072 IPR006311 Twin-arginine translocation pathway, signal sequence YPDSF_2072 IPR006657 Molybdopterin dinucleotide-binding domain YPDSF_2072 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPDSF_2073 IPR014297 Dimethylsulphoxide reductase, chain B YPDSF_2073 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPDSF_2073 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPDSF_2074 IPR007059 DMSO reductase anchor subunit (DmsC) YPDSF_2075 IPR036411 TorD-like superfamily YPDSF_2075 IPR028611 Tat proofreading chaperone DmsD YPDSF_2075 IPR020945 DMSO/Nitrate reductase chaperone YPDSF_2075 IPR026269 Tat proofreading chaperone DmsD-type YPDSF_2077 IPR008517 Protein of unknown function DUF799 YPDSF_2079 IPR005534 Curli production assembly/transport component CsgG YPDSF_2081 IPR016174 Di-haem cytochrome, transmembrane YPDSF_2081 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase YPDSF_2082 IPR004839 Aminotransferase, class I/classII YPDSF_2082 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_2082 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_2082 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_2083 IPR010856 Protein of unknown function DUF1479 YPDSF_2083 IPR027443 Isopenicillin N synthase-like YPDSF_2084 IPR003836 Glucokinase YPDSF_2086 IPR005119 LysR, substrate-binding YPDSF_2086 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_2086 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2086 IPR000847 Transcription regulator HTH, LysR YPDSF_2087 IPR023210 NADP-dependent oxidoreductase domain YPDSF_2087 IPR036812 NADP-dependent oxidoreductase domain superfamily YPDSF_2089 IPR001046 NRAMP family YPDSF_2090 IPR002668 Concentrative nucleoside transporter N-terminal domain YPDSF_2090 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain YPDSF_2090 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial YPDSF_2090 IPR011657 Concentrative nucleoside transporter C-terminal domain YPDSF_2090 IPR008276 Concentrative nucleoside transporter YPDSF_2091 IPR011657 Concentrative nucleoside transporter C-terminal domain YPDSF_2091 IPR008276 Concentrative nucleoside transporter YPDSF_2091 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial YPDSF_2091 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain YPDSF_2091 IPR002668 Concentrative nucleoside transporter N-terminal domain YPDSF_2092 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_2092 IPR033910 Glutamyl-tRNA synthetase YPDSF_2092 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain YPDSF_2092 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial YPDSF_2092 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPDSF_2092 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 YPDSF_2092 IPR000924 Glutamyl/glutaminyl-tRNA synthetase YPDSF_2092 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding YPDSF_2093 IPR036515 Transposase IS200-like superfamily YPDSF_2093 IPR002686 Transposase IS200-like YPDSF_2096 IPR024530 Putative quorum-sensing-regulated virulence factor YPDSF_2097 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type YPDSF_2097 IPR010994 RuvA domain 2-like YPDSF_2097 IPR004150 NAD-dependent DNA ligase, OB-fold YPDSF_2097 IPR012340 Nucleic acid-binding, OB-fold YPDSF_2097 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 YPDSF_2097 IPR013840 NAD-dependent DNA ligase, N-terminal YPDSF_2097 IPR013839 NAD-dependent DNA ligase, adenylation YPDSF_2097 IPR001679 NAD-dependent DNA ligase YPDSF_2097 IPR033136 NAD-dependent DNA ligase, conserved site YPDSF_2097 IPR018239 NAD-dependent DNA ligase, active site YPDSF_2097 IPR041663 DisA/LigA, helix-hairpin-helix motif YPDSF_2097 IPR001357 BRCT domain YPDSF_2097 IPR036420 BRCT domain superfamily YPDSF_2098 IPR007449 ZipA, C-terminal FtsZ-binding domain YPDSF_2098 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily YPDSF_2098 IPR011919 Cell division protein ZipA YPDSF_2099 IPR022985 Sulfate transporter CysZ YPDSF_2100 IPR005856 Cysteine synthase YPDSF_2100 IPR005859 Cysteine synthase CysK YPDSF_2100 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site YPDSF_2100 IPR001926 Pyridoxal-phosphate dependent enzyme YPDSF_2100 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPDSF_2101 IPR002114 Phosphotransferase system, HPr serine phosphorylation site YPDSF_2101 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YPDSF_2101 IPR035895 HPr-like superfamily YPDSF_2101 IPR000032 Phosphocarrier protein HPr-like YPDSF_2102 IPR036618 PtsI, HPr-binding domain superfamily YPDSF_2102 IPR008731 Phosphotransferase system, enzyme I N-terminal YPDSF_2102 IPR006318 Phosphotransferase system, enzyme I-like YPDSF_2102 IPR040442 Pyruvate kinase-like domain superfamily YPDSF_2102 IPR024692 Phosphotransferase system, enzyme I YPDSF_2102 IPR036637 Phosphohistidine domain superfamily YPDSF_2102 IPR023151 PEP-utilising enzyme, conserved site YPDSF_2102 IPR000121 PEP-utilising enzyme, C-terminal YPDSF_2102 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPDSF_2102 IPR018274 PEP-utilising enzyme, active site YPDSF_2102 IPR008279 PEP-utilising enzyme, mobile domain YPDSF_2103 IPR011055 Duplicated hybrid motif YPDSF_2103 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 YPDSF_2105 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPDSF_2105 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPDSF_2105 IPR005467 Histidine kinase domain YPDSF_2105 IPR003660 HAMP domain YPDSF_2105 IPR003594 Histidine kinase/HSP90-like ATPase YPDSF_2105 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPDSF_2105 IPR038515 CpxA, periplasmic domain superfamily YPDSF_2105 IPR032404 Two-component sensor protein CpxA, periplasmic domain YPDSF_2105 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_2106 IPR001789 Signal transduction response regulator, receiver domain YPDSF_2106 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2106 IPR039420 Transcriptional regulatory protein WalR-like YPDSF_2106 IPR001867 OmpR/PhoB-type DNA-binding domain YPDSF_2106 IPR011006 CheY-like superfamily YPDSF_2107 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPDSF_2107 IPR030190 Macrolide export protein MacA YPDSF_2107 IPR006143 RND efflux pump, membrane fusion protein YPDSF_2108 IPR025857 MacB-like periplasmic core domain YPDSF_2108 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2108 IPR017911 ABC transporter, macrolide export, ATP-binding domain YPDSF_2108 IPR003593 AAA+ ATPase domain YPDSF_2108 IPR003838 ABC transporter permease protein domain YPDSF_2108 IPR003439 ABC transporter-like YPDSF_2108 IPR017871 ABC transporter, conserved site YPDSF_2109 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily YPDSF_2109 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPDSF_2109 IPR023536 Coenzyme A disulphide reductase, staphyolococci YPDSF_2109 IPR017758 Coenzyme A disulphide reductase YPDSF_2109 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_2109 IPR023753 FAD/NAD(P)-binding domain YPDSF_2110 IPR038377 Sodium/glucose symporter superfamily YPDSF_2110 IPR001734 Sodium/solute symporter YPDSF_2111 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site YPDSF_2111 IPR007865 Aminopeptidase P, N-terminal YPDSF_2111 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPDSF_2111 IPR036005 Creatinase/aminopeptidase-like YPDSF_2111 IPR000994 Peptidase M24 YPDSF_2113 IPR004839 Aminotransferase, class I/classII YPDSF_2113 IPR027619 Putative C-S lyase YPDSF_2113 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_2113 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_2113 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_2115 IPR003660 HAMP domain YPDSF_2115 IPR003594 Histidine kinase/HSP90-like ATPase YPDSF_2115 IPR005467 Histidine kinase domain YPDSF_2115 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPDSF_2115 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPDSF_2115 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_2115 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPDSF_2116 IPR016032 Signal transduction response regulator, C-terminal effector YPDSF_2116 IPR001867 OmpR/PhoB-type DNA-binding domain YPDSF_2116 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2116 IPR011006 CheY-like superfamily YPDSF_2116 IPR001789 Signal transduction response regulator, receiver domain YPDSF_2116 IPR039420 Transcriptional regulatory protein WalR-like YPDSF_2118 IPR005858 Cysteine synthase CysM YPDSF_2118 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site YPDSF_2118 IPR001926 Pyridoxal-phosphate dependent enzyme YPDSF_2118 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPDSF_2118 IPR005856 Cysteine synthase YPDSF_2119 IPR005666 Sulphate transport system permease protein 1 YPDSF_2119 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2119 IPR008995 Molybdate/tungstate binding, C-terminal YPDSF_2119 IPR017871 ABC transporter, conserved site YPDSF_2119 IPR003439 ABC transporter-like YPDSF_2119 IPR014769 ABC transporter, sulphate/thiosulphate import, ATP-binding protein CysA, C-terminal YPDSF_2119 IPR003593 AAA+ ATPase domain YPDSF_2120 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_2120 IPR011866 Sulphate ABC transporter, permease protein CysW YPDSF_2120 IPR005667 Sulphate ABC transporter permease protein 2 YPDSF_2120 IPR035906 MetI-like superfamily YPDSF_2121 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_2121 IPR011865 Sulphate ABC transporter, permease protein CysT YPDSF_2121 IPR035906 MetI-like superfamily YPDSF_2121 IPR005667 Sulphate ABC transporter permease protein 2 YPDSF_2122 IPR005669 Thiosulphate/Sulfate-binding protein YPDSF_2122 IPR034408 Sulphate/thiosulphate-binding site YPDSF_2122 IPR000957 Sulphate/thiosulphate-binding, conserved site YPDSF_2123 IPR011701 Major facilitator superfamily YPDSF_2123 IPR020846 Major facilitator superfamily domain YPDSF_2123 IPR036259 MFS transporter superfamily YPDSF_2123 IPR004742 Sialic acid transporter YPDSF_2124 IPR001347 Sugar isomerase (SIS) YPDSF_2124 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2124 IPR000281 Helix-turn-helix protein RpiR YPDSF_2124 IPR009057 Homeobox-like domain superfamily YPDSF_2124 IPR035472 RpiR-like, SIS domain YPDSF_2125 IPR037012 YhcH/YjgK/YiaL superfamily YPDSF_2125 IPR004375 YhcH/YjgK/YiaL family YPDSF_2126 IPR023945 N-acetylmannosamine kinase, bacterial YPDSF_2126 IPR000600 ROK family YPDSF_2127 IPR001611 Leucine-rich repeat YPDSF_2127 IPR032675 Leucine-rich repeat domain superfamily YPDSF_2127 IPR032674 LRR-containing bacterial E3 ligase, N-terminal YPDSF_2128 IPR011060 Ribulose-phosphate binding barrel YPDSF_2128 IPR013785 Aldolase-type TIM barrel YPDSF_2128 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase YPDSF_2129 IPR002220 DapA-like YPDSF_2129 IPR020625 Schiff base-forming aldolase, active site YPDSF_2129 IPR013785 Aldolase-type TIM barrel YPDSF_2129 IPR005264 N-acetylneuraminate lyase YPDSF_2130 IPR006314 Dyp-type peroxidase YPDSF_2130 IPR011008 Dimeric alpha-beta barrel YPDSF_2133 IPR005220 Bacterial OB-fold YPDSF_2133 IPR016052 Bacteriophage 933W, L0136 YPDSF_2133 IPR036700 Bacterial OB-fold superfamily YPDSF_2134 IPR005546 Autotransporter beta-domain YPDSF_2134 IPR030930 Adhesin of bacterial autotransporter system YPDSF_2134 IPR036709 Autotransporter beta-domain superfamily YPDSF_2134 IPR024973 ESPR domain YPDSF_2134 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPDSF_2134 IPR011050 Pectin lyase fold/virulence factor YPDSF_2134 IPR006315 Outer membrane autotransporter barrel YPDSF_2134 IPR003991 Pertactin virulence factor family YPDSF_2134 IPR004899 Pertactin, central region YPDSF_2136 IPR023072 Acetyltransferase, YpeA YPDSF_2136 IPR016181 Acyl-CoA N-acyltransferase YPDSF_2136 IPR000182 GNAT domain YPDSF_2137 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily YPDSF_2137 IPR001260 Coproporphyrinogen III oxidase, aerobic YPDSF_2137 IPR018375 Coproporphyrinogen III oxidase, conserved site YPDSF_2138 IPR003791 Protein of unknown function UPF0178 YPDSF_2139 IPR042113 Phosphate acetyltransferase, domain 1 YPDSF_2139 IPR012301 Malic enzyme, N-terminal domain YPDSF_2139 IPR015884 Malic enzyme, conserved site YPDSF_2139 IPR012188 NAD(P)-dependent malic enzyme YPDSF_2139 IPR037062 Malic enzyme, N-terminal domain superfamily YPDSF_2139 IPR036291 NAD(P)-binding domain superfamily YPDSF_2139 IPR002505 Phosphate acetyl/butaryl transferase YPDSF_2139 IPR042112 Phosphate acetyltransferase, domain 2 YPDSF_2139 IPR012302 Malic enzyme, NAD-binding YPDSF_2140 IPR015797 NUDIX hydrolase-like domain superfamily YPDSF_2140 IPR000086 NUDIX hydrolase domain YPDSF_2140 IPR004385 Nucleoside diphosphate pyrophosphatase YPDSF_2141 IPR024717 Denitrification system component NapC/NirT/NrfH YPDSF_2141 IPR038266 NapC/NirT cytochrome c superfamily YPDSF_2141 IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT YPDSF_2141 IPR036280 Multiheme cytochrome superfamily YPDSF_2141 IPR011031 Multihaem cytochrome YPDSF_2141 IPR005126 NapC/NirT cytochrome c, N-terminal YPDSF_2142 IPR011031 Multihaem cytochrome YPDSF_2142 IPR005591 Nitrate reductase cytochrome c-type subunit NapB YPDSF_2142 IPR036280 Multiheme cytochrome superfamily YPDSF_2143 IPR006656 Molybdopterin oxidoreductase YPDSF_2143 IPR006657 Molybdopterin dinucleotide-binding domain YPDSF_2143 IPR041957 Nitrate reductase NapA-like, molybdopterin-binding domain YPDSF_2143 IPR009010 Aspartate decarboxylase-like domain superfamily YPDSF_2143 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YPDSF_2143 IPR006311 Twin-arginine translocation pathway, signal sequence YPDSF_2143 IPR010051 Periplasmic nitrate reductase, large subunit YPDSF_2143 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPDSF_2143 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPDSF_2144 IPR005623 Chaperone NapD, nitrate reductase assembly YPDSF_2145 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPDSF_2145 IPR004496 Ferredoxin-type protein NapF YPDSF_2145 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPDSF_2146 IPR016032 Signal transduction response regulator, C-terminal effector YPDSF_2146 IPR011006 CheY-like superfamily YPDSF_2146 IPR000792 Transcription regulator LuxR, C-terminal YPDSF_2146 IPR001789 Signal transduction response regulator, receiver domain YPDSF_2148 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 YPDSF_2148 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPDSF_2148 IPR001036 Acriflavin resistance protein YPDSF_2150 IPR007404 LexA-binding, inner membrane-associated putative hydrolase YPDSF_2151 IPR023885 4Fe4S-binding SPASM domain YPDSF_2151 IPR013785 Aldolase-type TIM barrel YPDSF_2151 IPR034491 Anaerobic Ser-type sulfatase-maturating enzyme YPDSF_2151 IPR007197 Radical SAM YPDSF_2152 IPR024607 Sulfatase, conserved site YPDSF_2152 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPDSF_2152 IPR000917 Sulfatase, N-terminal YPDSF_2153 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit YPDSF_2153 IPR013611 Transport-associated OB, type 2 YPDSF_2153 IPR003439 ABC transporter-like YPDSF_2153 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA YPDSF_2153 IPR003593 AAA+ ATPase domain YPDSF_2153 IPR017871 ABC transporter, conserved site YPDSF_2153 IPR008995 Molybdate/tungstate binding, C-terminal YPDSF_2153 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2154 IPR035906 MetI-like superfamily YPDSF_2154 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_2157 IPR006504 Transcriptional regulator Spx/MgsR YPDSF_2157 IPR006660 Arsenate reductase-like YPDSF_2157 IPR036249 Thioredoxin-like superfamily YPDSF_2158 IPR036264 Bacterial exopeptidase dimerisation domain YPDSF_2158 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria YPDSF_2158 IPR002933 Peptidase M20 YPDSF_2158 IPR011650 Peptidase M20, dimerisation domain YPDSF_2158 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YPDSF_2159 IPR003709 Peptidase M15B YPDSF_2159 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily YPDSF_2160 IPR020910 Uncharacterised protein family UPF0370 YPDSF_2161 IPR013562 tRNA(Met) cytidine acetyltransferase TmcA, N-terminal YPDSF_2161 IPR016181 Acyl-CoA N-acyltransferase YPDSF_2161 IPR000182 GNAT domain YPDSF_2161 IPR007807 Helicase domain YPDSF_2161 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2161 IPR038321 TmcA, C-terminal domain superfamily YPDSF_2161 IPR033442 tRNA(Met) cytidine acetyltransferase TmcA, tRNA-binding domain YPDSF_2161 IPR032672 TmcA/NAT10/Kre33 YPDSF_2161 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA YPDSF_2162 IPR007382 Uncharacterised protein family UPF0756, transmembrame YPDSF_2163 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative YPDSF_2164 IPR028923 SAICAR synthetase/ADE2, N-terminal YPDSF_2164 IPR033934 Bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide synthase YPDSF_2164 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase YPDSF_2164 IPR018236 SAICAR synthetase, conserved site YPDSF_2165 IPR002686 Transposase IS200-like YPDSF_2165 IPR036515 Transposase IS200-like superfamily YPDSF_2166 IPR014524 Outer membrane protein assembly factor BamC YPDSF_2166 IPR042268 Outer membrane protein assembly factor BamC, C-terminal YPDSF_2166 IPR010653 NlpB/DapX lipoprotein YPDSF_2167 IPR013785 Aldolase-type TIM barrel YPDSF_2167 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA YPDSF_2167 IPR002220 DapA-like YPDSF_2167 IPR020625 Schiff base-forming aldolase, active site YPDSF_2167 IPR020624 Schiff base-forming aldolase, conserved site YPDSF_2168 IPR016867 Glycine cleavage system transcriptional repressor YPDSF_2168 IPR002912 ACT domain YPDSF_2169 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant YPDSF_2169 IPR024706 Peroxiredoxin, AhpC-type YPDSF_2169 IPR036249 Thioredoxin-like superfamily YPDSF_2169 IPR013766 Thioredoxin domain YPDSF_2172 IPR002549 Transmembrane protein TqsA-like YPDSF_2173 IPR011716 Tetratricopeptide TPR-3 YPDSF_2173 IPR001915 Peptidase M48 YPDSF_2173 IPR011990 Tetratricopeptide-like helical domain superfamily YPDSF_2173 IPR030873 Beta-barrel assembly-enhancing protease YPDSF_2174 IPR036249 Thioredoxin-like superfamily YPDSF_2174 IPR006659 Arsenate reductase YPDSF_2174 IPR006660 Arsenate reductase-like YPDSF_2175 IPR020591 Chromosomal replication control, initiator DnaA-like YPDSF_2175 IPR013317 Chromosomal replication initiator protein DnaA YPDSF_2175 IPR017788 DnaA regulatory inactivator Hda YPDSF_2175 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2175 IPR022864 DnaA regulatory inactivator Hda, Enterobacteriaceae YPDSF_2176 IPR002686 Transposase IS200-like YPDSF_2176 IPR036515 Transposase IS200-like superfamily YPDSF_2177 IPR034332 Uracil phosphoribosyltransferase, bacterial-type YPDSF_2177 IPR005765 Uracil phosphoribosyl transferase YPDSF_2177 IPR000836 Phosphoribosyltransferase domain YPDSF_2177 IPR029057 Phosphoribosyltransferase-like YPDSF_2178 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase YPDSF_2178 IPR036921 PurM-like, N-terminal domain superfamily YPDSF_2178 IPR016188 PurM-like, N-terminal domain YPDSF_2178 IPR036676 PurM-like, C-terminal domain superfamily YPDSF_2178 IPR010918 PurM-like, C-terminal domain YPDSF_2179 IPR036477 Formyl transferase, N-terminal domain superfamily YPDSF_2179 IPR002376 Formyl transferase, N-terminal YPDSF_2179 IPR004607 Phosphoribosylglycinamide formyltransferase YPDSF_2179 IPR001555 Phosphoribosylglycinamide formyltransferase, active site YPDSF_2180 IPR000182 GNAT domain YPDSF_2180 IPR016181 Acyl-CoA N-acyltransferase YPDSF_2183 IPR017871 ABC transporter, conserved site YPDSF_2183 IPR003593 AAA+ ATPase domain YPDSF_2183 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2183 IPR015850 ABC transporter, phosphate import, PstB YPDSF_2183 IPR005670 Phosphate transport system permease protein 1 YPDSF_2183 IPR003439 ABC transporter-like YPDSF_2184 IPR035906 MetI-like superfamily YPDSF_2184 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_2184 IPR005672 Phosphate transport system permease protein PstA YPDSF_2185 IPR011864 Phosphate ABC transporter, permease protein PstC YPDSF_2185 IPR035906 MetI-like superfamily YPDSF_2185 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_2186 IPR003414 Polyphosphate kinase YPDSF_2186 IPR001736 Phospholipase D/Transphosphatidylase YPDSF_2186 IPR025198 Polyphosphate kinase N-terminal domain YPDSF_2186 IPR025200 Polyphosphate kinase C-terminal domain 2 YPDSF_2186 IPR036832 Polyphosphate kinase N-terminal domain superfamily YPDSF_2186 IPR036830 Polyphosphate kinase middle domain superfamily YPDSF_2186 IPR024953 Polyphosphate kinase middle domain YPDSF_2186 IPR041108 Polyphosphate kinase, C-terminal domain 1 YPDSF_2187 IPR030673 Pyrophosphatase, GppA/Ppx-type YPDSF_2187 IPR003695 Ppx/GppA phosphatase YPDSF_2187 IPR022371 Exopolyphosphatase YPDSF_2189 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily YPDSF_2189 IPR038076 MgtE, N-terminal domain superfamily YPDSF_2189 IPR006668 Magnesium transporter, MgtE intracellular domain YPDSF_2189 IPR006667 SLC41 divalent cation transporters, integral membrane domain YPDSF_2189 IPR000644 CBS domain YPDSF_2189 IPR038048 Magnesium transporter MgtE, transmembrane domain YPDSF_2189 IPR006669 Magnesium transporter MgtE YPDSF_2190 IPR013126 Heat shock protein 70 family YPDSF_2190 IPR042054 YegD-like YPDSF_2190 IPR018181 Heat shock protein 70, conserved site YPDSF_2191 IPR035906 MetI-like superfamily YPDSF_2191 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_2192 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_2192 IPR035906 MetI-like superfamily YPDSF_2194 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_2194 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_2194 IPR004632 4-aminobutyrate aminotransferase, bacterial YPDSF_2194 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_2194 IPR005814 Aminotransferase class-III YPDSF_2195 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_2195 IPR004839 Aminotransferase, class I/classII YPDSF_2195 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2195 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_2195 IPR000524 Transcription regulator HTH, GntR YPDSF_2195 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_2196 IPR003593 AAA+ ATPase domain YPDSF_2196 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA YPDSF_2196 IPR003439 ABC transporter-like YPDSF_2196 IPR017871 ABC transporter, conserved site YPDSF_2196 IPR008995 Molybdate/tungstate binding, C-terminal YPDSF_2196 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2196 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit YPDSF_2196 IPR013611 Transport-associated OB, type 2 YPDSF_2197 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YPDSF_2197 IPR022824 Multidrug resistance protein MdtA YPDSF_2197 IPR006143 RND efflux pump, membrane fusion protein YPDSF_2198 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPDSF_2198 IPR001036 Acriflavin resistance protein YPDSF_2198 IPR022831 Multidrug resistance protein MdtB YPDSF_2201 IPR004638 Drug resistance transporter EmrB-like YPDSF_2201 IPR020846 Major facilitator superfamily domain YPDSF_2201 IPR036259 MFS transporter superfamily YPDSF_2201 IPR023721 Multidrug resistance protein MdtD YPDSF_2201 IPR011701 Major facilitator superfamily YPDSF_2202 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPDSF_2202 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPDSF_2202 IPR005467 Histidine kinase domain YPDSF_2202 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_2202 IPR003594 Histidine kinase/HSP90-like ATPase YPDSF_2202 IPR003660 HAMP domain YPDSF_2202 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPDSF_2203 IPR039420 Transcriptional regulatory protein WalR-like YPDSF_2203 IPR011006 CheY-like superfamily YPDSF_2203 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2203 IPR001867 OmpR/PhoB-type DNA-binding domain YPDSF_2203 IPR016032 Signal transduction response regulator, C-terminal effector YPDSF_2203 IPR001789 Signal transduction response regulator, receiver domain YPDSF_2204 IPR036913 YegP-like superfamily YPDSF_2204 IPR010879 Domain of unknown function DUF1508 YPDSF_2206 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily YPDSF_2206 IPR022433 Lipid kinase YegS YPDSF_2206 IPR001206 Diacylglycerol kinase, catalytic domain YPDSF_2206 IPR005218 Diacylglycerol/lipid kinase YPDSF_2206 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal YPDSF_2207 IPR036501 Inhibitor of vertebrate lysozyme superfamily YPDSF_2207 IPR014453 Inhibitor of vertebrate lysozyme YPDSF_2209 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase YPDSF_2209 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase YPDSF_2209 IPR029056 Ribokinase-like YPDSF_2212 IPR001207 Transposase, mutator type YPDSF_2214 IPR036515 Transposase IS200-like superfamily YPDSF_2214 IPR002686 Transposase IS200-like YPDSF_2215 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_2215 IPR025777 GMP synthetase ATP pyrophosphatase domain YPDSF_2215 IPR001674 GMP synthase, C-terminal YPDSF_2215 IPR004739 GMP synthase, glutamine amidotransferase YPDSF_2215 IPR029062 Class I glutamine amidotransferase-like YPDSF_2215 IPR017926 Glutamine amidotransferase YPDSF_2215 IPR022955 GMP synthase YPDSF_2215 IPR022310 NAD/GMP synthase YPDSF_2216 IPR001093 IMP dehydrogenase/GMP reductase YPDSF_2216 IPR000644 CBS domain YPDSF_2216 IPR005990 Inosine-5'-monophosphate dehydrogenase YPDSF_2216 IPR015875 IMP dehydrogenase / GMP reductase, conserved site YPDSF_2216 IPR013785 Aldolase-type TIM barrel YPDSF_2217 IPR025824 OB-fold nucleic acid binding domain YPDSF_2217 IPR020579 Exonuclease VII, large subunit, C-terminal YPDSF_2217 IPR003753 Exonuclease VII, large subunit YPDSF_2218 IPR010807 Protein of unknown function DUF1407 YPDSF_2218 IPR029037 YfgJ-like YPDSF_2220 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2220 IPR015946 K homology domain-like, alpha/beta YPDSF_2220 IPR005225 Small GTP-binding protein domain YPDSF_2220 IPR006073 GTP binding domain YPDSF_2220 IPR016484 GTP-binding protein EngA YPDSF_2220 IPR031166 EngA-type guanine nucleotide-binding (G) domain YPDSF_2220 IPR032859 GTPase Der, C-terminal KH-domain-like YPDSF_2221 IPR002372 Pyrrolo-quinoline quinone repeat YPDSF_2221 IPR015943 WD40/YVTN repeat-like-containing domain superfamily YPDSF_2221 IPR017687 Outer membrane protein assembly factor BamB YPDSF_2221 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat YPDSF_2221 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily YPDSF_2222 IPR026039 Uncharacterised protein family UPF0070 YPDSF_2222 IPR018704 Tetratricopeptide repeat-like domain YPDSF_2222 IPR011990 Tetratricopeptide-like helical domain superfamily YPDSF_2223 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit YPDSF_2223 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain YPDSF_2223 IPR015807 Histidine-tRNA ligase YPDSF_2223 IPR033656 Histidyl-anticodon-binding YPDSF_2223 IPR004154 Anticodon-binding YPDSF_2223 IPR036621 Anticodon-binding domain superfamily YPDSF_2223 IPR006195 Aminoacyl-tRNA synthetase, class II YPDSF_2224 IPR011005 Dihydropteroate synthase-like YPDSF_2224 IPR036849 Enolase-like, C-terminal domain superfamily YPDSF_2224 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial YPDSF_2224 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type YPDSF_2225 IPR023690 Cytoskeleton protein RodZ YPDSF_2225 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPDSF_2225 IPR025194 Domain of unknown function DUF4115 YPDSF_2225 IPR001387 Cro/C1-type helix-turn-helix domain YPDSF_2227 IPR040072 Methyltransferase (Class A) YPDSF_2227 IPR013785 Aldolase-type TIM barrel YPDSF_2227 IPR007197 Radical SAM YPDSF_2227 IPR027492 Dual-specificity RNA methyltransferase RlmN YPDSF_2227 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr YPDSF_2228 IPR001564 Nucleoside diphosphate kinase YPDSF_2228 IPR023005 Nucleoside diphosphate kinase, active site YPDSF_2228 IPR034907 Nucleoside diphosphate kinase-like domain YPDSF_2228 IPR036850 Nucleoside diphosphate kinase-like domain superfamily YPDSF_2230 IPR003991 Pertactin virulence factor family YPDSF_2230 IPR036709 Autotransporter beta-domain superfamily YPDSF_2230 IPR005546 Autotransporter beta-domain YPDSF_2230 IPR006315 Outer membrane autotransporter barrel YPDSF_2230 IPR004899 Pertactin, central region YPDSF_2230 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPDSF_2230 IPR030930 Adhesin of bacterial autotransporter system YPDSF_2230 IPR011050 Pectin lyase fold/virulence factor YPDSF_2231 IPR004899 Pertactin, central region YPDSF_2231 IPR005546 Autotransporter beta-domain YPDSF_2231 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPDSF_2231 IPR006315 Outer membrane autotransporter barrel YPDSF_2231 IPR036709 Autotransporter beta-domain superfamily YPDSF_2231 IPR030930 Adhesin of bacterial autotransporter system YPDSF_2231 IPR003991 Pertactin virulence factor family YPDSF_2231 IPR011050 Pectin lyase fold/virulence factor YPDSF_2233 IPR027945 SseB protein, C-terminal YPDSF_2233 IPR009839 SseB protein N-terminal domain YPDSF_2234 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal YPDSF_2234 IPR008330 Peptidase M17, peptidase B YPDSF_2234 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B YPDSF_2234 IPR001346 Interferon regulatory factor DNA-binding domain YPDSF_2235 IPR007479 ISC system FeS cluster assembly, IscX YPDSF_2235 IPR036762 IscX-like superfamily YPDSF_2236 IPR018298 Adrenodoxin, iron-sulphur binding site YPDSF_2236 IPR012675 Beta-grasp domain superfamily YPDSF_2236 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria YPDSF_2236 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPDSF_2236 IPR001055 Adrenodoxin YPDSF_2236 IPR036010 2Fe-2S ferredoxin-like superfamily YPDSF_2237 IPR018181 Heat shock protein 70, conserved site YPDSF_2237 IPR042039 HscA chaperone, nucleotide-binding domain YPDSF_2237 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily YPDSF_2237 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily YPDSF_2237 IPR013126 Heat shock protein 70 family YPDSF_2237 IPR010236 ISC system FeS cluster assembly, HscA chaperone YPDSF_2238 IPR036869 Chaperone J-domain superfamily YPDSF_2238 IPR001623 DnaJ domain YPDSF_2238 IPR004640 Co-chaperone Hsc20 YPDSF_2238 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain YPDSF_2238 IPR036386 HscB, C-terminal domain superfamily YPDSF_2239 IPR011302 Iron-binding protein IscA, proteobacteria YPDSF_2239 IPR000361 FeS cluster biogenesis YPDSF_2239 IPR035903 HesB-like domain superfamily YPDSF_2239 IPR017870 FeS cluster insertion, C-terminal, conserved site YPDSF_2239 IPR016092 FeS cluster insertion protein YPDSF_2240 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal YPDSF_2240 IPR011339 ISC system FeS cluster assembly, IscU scaffold YPDSF_2241 IPR000192 Aminotransferase class V domain YPDSF_2241 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_2241 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_2241 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPDSF_2241 IPR010240 Cysteine desulfurase IscS YPDSF_2241 IPR016454 Cysteine desulfurase YPDSF_2241 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_2242 IPR030489 Transcription regulator Rrf2-type, conserved site YPDSF_2242 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2242 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_2242 IPR000944 Transcription regulator Rrf2-type YPDSF_2242 IPR010242 Transcription factor HTH, IscR YPDSF_2243 IPR029028 Alpha/beta knot methyltransferases YPDSF_2243 IPR004384 RNA methyltransferase TrmJ/LasT YPDSF_2243 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPDSF_2243 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPDSF_2244 IPR020583 Inositol monophosphatase, metal-binding site YPDSF_2244 IPR020550 Inositol monophosphatase, conserved site YPDSF_2244 IPR000760 Inositol monophosphatase-like YPDSF_2244 IPR033942 Inositol monophosphatase YPDSF_2244 IPR022337 Inositol monophosphatase, SuhB YPDSF_2245 IPR011541 Nickel/cobalt transporter, high-affinity YPDSF_2246 IPR016537 Uncharacterised conserved protein UCP008159, YPDSF_2246 IPR010412 Protein of unknown function DUF1007 YPDSF_2247 IPR011608 PRD domain YPDSF_2247 IPR036634 PRD domain superfamily YPDSF_2248 IPR026032 Probable 3-phenylpropionic acid transporter YPDSF_2248 IPR024989 Major facilitator superfamily associated domain YPDSF_2248 IPR036259 MFS transporter superfamily YPDSF_2249 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPDSF_2249 IPR000758 Virulence-related outer membrane protein YPDSF_2249 IPR027385 Outer membrane protein beta-barrel domain YPDSF_2251 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_2251 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_2251 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_2251 IPR039429 Serine hydroxymethyltransferase-like domain YPDSF_2251 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site YPDSF_2251 IPR001085 Serine hydroxymethyltransferase YPDSF_2252 IPR023950 Flavohemoprotein YPDSF_2252 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPDSF_2252 IPR000971 Globin YPDSF_2252 IPR009050 Globin-like superfamily YPDSF_2252 IPR012292 Globin/Protoglobin YPDSF_2252 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPDSF_2252 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase YPDSF_2252 IPR017938 Riboflavin synthase-like beta-barrel YPDSF_2252 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPDSF_2252 IPR017927 FAD-binding domain, ferredoxin reductase-type YPDSF_2253 IPR012337 Ribonuclease H-like superfamily YPDSF_2253 IPR036397 Ribonuclease H superfamily YPDSF_2253 IPR006120 Resolvase, HTH domain YPDSF_2253 IPR001584 Integrase, catalytic core YPDSF_2253 IPR017894 HTH domain, IS21 transposase-type YPDSF_2254 IPR002611 IstB-like ATP-binding protein YPDSF_2254 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2254 IPR001270 ClpA/B family YPDSF_2254 IPR003593 AAA+ ATPase domain YPDSF_2254 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_2255 IPR041444 YhfZ, helix-turn-helix domain YPDSF_2255 IPR032791 Uncharacterised protein YhfZ, C-terminal domain YPDSF_2256 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPDSF_2256 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPDSF_2256 IPR017918 Nitrogen regulatory protein PII, conserved site YPDSF_2256 IPR002187 Nitrogen regulatory protein PII YPDSF_2256 IPR002332 Nitrogen regulatory protein P-II, urydylation site YPDSF_2257 IPR036526 Carbon-nitrogen hydrolase superfamily YPDSF_2257 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_2257 IPR022310 NAD/GMP synthase YPDSF_2257 IPR014445 Glutamine-dependent NAD(+) synthetase YPDSF_2257 IPR000132 Nitrilase/cyanide hydratase, conserved site YPDSF_2257 IPR003010 Carbon-nitrogen hydrolase YPDSF_2257 IPR003694 NAD(+) synthetase YPDSF_2258 IPR001789 Signal transduction response regulator, receiver domain YPDSF_2258 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2258 IPR002078 RNA polymerase sigma factor 54 interaction domain YPDSF_2258 IPR025944 Sigma-54 interaction domain, conserved site YPDSF_2258 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPDSF_2258 IPR009057 Homeobox-like domain superfamily YPDSF_2258 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPDSF_2258 IPR011006 CheY-like superfamily YPDSF_2258 IPR003593 AAA+ ATPase domain YPDSF_2259 IPR025262 Quorum-sensing regulator protein G YPDSF_2260 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_2260 IPR005467 Histidine kinase domain YPDSF_2260 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPDSF_2260 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPDSF_2260 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPDSF_2260 IPR003594 Histidine kinase/HSP90-like ATPase YPDSF_2264 IPR010918 PurM-like, C-terminal domain YPDSF_2264 IPR010073 Phosphoribosylformylglycinamidine synthase PurL YPDSF_2264 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily YPDSF_2264 IPR036921 PurM-like, N-terminal domain superfamily YPDSF_2264 IPR017926 Glutamine amidotransferase YPDSF_2264 IPR040707 Phosphoribosylformylglycinamidine synthase, N-terminal YPDSF_2264 IPR041609 Phosphoribosylformylglycinamidine synthase, linker domain YPDSF_2264 IPR036676 PurM-like, C-terminal domain superfamily YPDSF_2264 IPR029062 Class I glutamine amidotransferase-like YPDSF_2265 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPDSF_2265 IPR000189 Prokaryotic transglycosylase, active site YPDSF_2265 IPR008258 Transglycosylase SLT domain 1 YPDSF_2265 IPR023703 Membrane-bound lytic murein transglycosylase F YPDSF_2265 IPR023346 Lysozyme-like domain superfamily YPDSF_2266 IPR002125 Cytidine and deoxycytidylate deaminase domain YPDSF_2266 IPR016193 Cytidine deaminase-like YPDSF_2266 IPR028883 tRNA-specific adenosine deaminase YPDSF_2266 IPR016192 APOBEC/CMP deaminase, zinc-binding YPDSF_2267 IPR036412 HAD-like superfamily YPDSF_2267 IPR006435 HAD-superfamily hydrolase, subfamily IF, YfhB YPDSF_2267 IPR023214 HAD superfamily YPDSF_2268 IPR005486 Glucokinase regulatory protein, conserved site YPDSF_2268 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ YPDSF_2268 IPR040190 N-acetylmuramic acid 6-phosphate etherase/glucokinase regulatory protein YPDSF_2268 IPR001347 Sugar isomerase (SIS) YPDSF_2268 IPR009060 UBA-like superfamily YPDSF_2269 IPR035472 RpiR-like, SIS domain YPDSF_2269 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2269 IPR001347 Sugar isomerase (SIS) YPDSF_2269 IPR000281 Helix-turn-helix protein RpiR YPDSF_2269 IPR009057 Homeobox-like domain superfamily YPDSF_2270 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPDSF_2270 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPDSF_2271 IPR036515 Transposase IS200-like superfamily YPDSF_2271 IPR002686 Transposase IS200-like YPDSF_2272 IPR007040 Ribosome modulation factor YPDSF_2272 IPR023200 Ribosome modulation factor domain superfamily YPDSF_2273 IPR005586 ABC-type transport auxiliary lipoprotein component YPDSF_2274 IPR003399 Mce/MlaD YPDSF_2275 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type YPDSF_2275 IPR007498 Intermembrane transport protein PqiA-like YPDSF_2276 IPR032781 ABC-transporter extension domain YPDSF_2276 IPR003439 ABC transporter-like YPDSF_2276 IPR017871 ABC transporter, conserved site YPDSF_2276 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2276 IPR032524 ABC transporter Uup, C-terminal YPDSF_2276 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily YPDSF_2276 IPR003593 AAA+ ATPase domain YPDSF_2277 IPR004114 THUMP domain YPDSF_2277 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_2277 IPR019614 S-adenosylmethionine-dependent methyltransferase YPDSF_2277 IPR017244 Ribosomal RNA large subunit methyltransferase K/L YPDSF_2277 IPR000241 Putative RNA methylase domain YPDSF_2277 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPDSF_2278 IPR005302 Molybdenum cofactor sulfurase, C-terminal YPDSF_2278 IPR011037 Pyruvate kinase-like, insert domain superfamily YPDSF_2278 IPR005303 MOSC, N-terminal beta barrel YPDSF_2278 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPDSF_2278 IPR036010 2Fe-2S ferredoxin-like superfamily YPDSF_2278 IPR012675 Beta-grasp domain superfamily YPDSF_2278 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPDSF_2279 IPR009809 Cell division protein ZapC YPDSF_2280 IPR005720 Dihydroorotate dehydrogenase domain YPDSF_2280 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 YPDSF_2280 IPR001295 Dihydroorotate dehydrogenase, conserved site YPDSF_2280 IPR013785 Aldolase-type TIM barrel YPDSF_2280 IPR005719 Dihydroorotate dehydrogenase, class 2 YPDSF_2281 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold YPDSF_2281 IPR012779 Peptidase M1, alanyl aminopeptidase YPDSF_2281 IPR027268 Peptidase M4/M1, CTD superfamily YPDSF_2281 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal YPDSF_2281 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily YPDSF_2281 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase YPDSF_2281 IPR014782 Peptidase M1, membrane alanine aminopeptidase YPDSF_2281 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily YPDSF_2281 IPR042097 Aminopeptidase N-like , N-terminal YPDSF_2282 IPR041525 Nicotinate/nicotinamide phosphoribosyltransferase YPDSF_2282 IPR040727 Nicotinate phosphoribosyltransferase, N-terminal domain YPDSF_2282 IPR006406 Nicotinate phosphoribosyltransferase YPDSF_2282 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal YPDSF_2282 IPR007229 Nicotinate phosphoribosyltransferase family YPDSF_2283 IPR012340 Nucleic acid-binding, OB-fold YPDSF_2283 IPR006195 Aminoacyl-tRNA synthetase, class II YPDSF_2283 IPR004522 Asparagine-tRNA ligase YPDSF_2283 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb YPDSF_2283 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YPDSF_2283 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YPDSF_2284 IPR033900 Porin domain, Gram-negative type YPDSF_2284 IPR001702 Porin, Gram-negative type YPDSF_2284 IPR001897 Porin, gammaproteobacterial YPDSF_2284 IPR013793 Porin, Gram-negative type, conserved site YPDSF_2284 IPR023614 Porin domain superfamily YPDSF_2285 IPR000796 Aspartate/other aminotransferase YPDSF_2285 IPR004839 Aminotransferase, class I/classII YPDSF_2285 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_2285 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_2285 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_2285 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site YPDSF_2286 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPDSF_2286 IPR001279 Metallo-beta-lactamase YPDSF_2287 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily YPDSF_2287 IPR010275 Protein of unknown function DUF882 YPDSF_2287 IPR006311 Twin-arginine translocation pathway, signal sequence YPDSF_2288 IPR002477 Peptidoglycan binding-like YPDSF_2288 IPR005490 L,D-transpeptidase catalytic domain YPDSF_2288 IPR036365 PGBD-like superfamily YPDSF_2288 IPR038063 L,D-transpeptidase catalytic domain-like YPDSF_2290 IPR007406 MukB, N-terminal domain YPDSF_2290 IPR012090 Chromosome partition protein MukB YPDSF_2290 IPR032520 MukB, hinge domain YPDSF_2290 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2291 IPR042038 MukE, N-terminal domain YPDSF_2291 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE YPDSF_2291 IPR042037 MukE, C-terminal domain YPDSF_2292 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_2292 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2292 IPR033439 Chromosome partition protein MukF, winged-helix domain YPDSF_2292 IPR036141 MukF, middle domain superfamily YPDSF_2292 IPR033440 Chromosome partition protein MukF, middle domain YPDSF_2292 IPR038198 MukF, C-terminal domain superfamily YPDSF_2292 IPR033441 Chromosome partition protein MukF, C-terminal domain YPDSF_2292 IPR005582 Chromosome partition protein MukF YPDSF_2292 IPR010916 TonB box, conserved site YPDSF_2293 IPR033664 tRNA 5-carboxymethoxyuridine methyltransferase YPDSF_2293 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_2294 IPR002575 Aminoglycoside phosphotransferase YPDSF_2294 IPR011009 Protein kinase-like domain superfamily YPDSF_2295 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase YPDSF_2295 IPR003329 Acylneuraminate cytidylyltransferase YPDSF_2295 IPR029044 Nucleotide-diphospho-sugar transferases YPDSF_2296 IPR005651 Trm112-like YPDSF_2297 IPR012340 Nucleic acid-binding, OB-fold YPDSF_2297 IPR002059 Cold-shock protein, DNA-binding YPDSF_2297 IPR012156 Cold shock, CspA YPDSF_2297 IPR011129 Cold shock domain YPDSF_2297 IPR019844 Cold-shock (CSD) domain YPDSF_2298 IPR009770 Domain of unknown function DUF1338 YPDSF_2299 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2299 IPR003758 Tetraacyldisaccharide 4'-kinase YPDSF_2300 IPR039421 Type I protein exporter YPDSF_2300 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2300 IPR011917 ABC transporter, lipid A export, MsbA YPDSF_2300 IPR017871 ABC transporter, conserved site YPDSF_2300 IPR003439 ABC transporter-like YPDSF_2300 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPDSF_2300 IPR011527 ABC transporter type 1, transmembrane domain YPDSF_2300 IPR003593 AAA+ ATPase domain YPDSF_2301 IPR004477 ComEC/Rec2-related protein YPDSF_2301 IPR004797 Competence protein ComEC/Rec2 YPDSF_2301 IPR001279 Metallo-beta-lactamase YPDSF_2301 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPDSF_2301 IPR035681 ComA-like, MBL domain YPDSF_2302 IPR000119 Histone-like DNA-binding protein YPDSF_2302 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily YPDSF_2302 IPR020816 Histone-like DNA-binding protein, conserved site YPDSF_2302 IPR005685 Integration host factor, beta subunit YPDSF_2303 IPR000110 Ribosomal protein S1 YPDSF_2303 IPR022967 RNA-binding domain, S1 YPDSF_2303 IPR003029 S1 domain YPDSF_2303 IPR012340 Nucleic acid-binding, OB-fold YPDSF_2304 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2304 IPR011994 Cytidylate kinase domain YPDSF_2304 IPR003136 Cytidylate kinase YPDSF_2305 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase YPDSF_2305 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site YPDSF_2305 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta YPDSF_2305 IPR001986 Enolpyruvate transferase domain YPDSF_2305 IPR036968 Enolpyruvate transferase domain superfamily YPDSF_2306 IPR000192 Aminotransferase class V domain YPDSF_2306 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPDSF_2306 IPR022278 Phosphoserine aminotransferase YPDSF_2306 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_2306 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_2306 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_2308 IPR024973 ESPR domain YPDSF_2308 IPR005594 YadA-like, C-terminal YPDSF_2308 IPR008635 Coiled stalk of trimeric autotransporter adhesin YPDSF_2308 IPR008640 Head domain of trimeric autotransporter adhesin YPDSF_2308 IPR005594 YadA-like, C-terminal YPDSF_2308 IPR011049 Serralysin-like metalloprotease, C-terminal YPDSF_2308 IPR011049 Serralysin-like metalloprotease, C-terminal YPDSF_2308 IPR008635 Coiled stalk of trimeric autotransporter adhesin YPDSF_2308 IPR024973 ESPR domain YPDSF_2308 IPR008640 Head domain of trimeric autotransporter adhesin YPDSF_2309 IPR027474 L-asparaginase, N-terminal YPDSF_2309 IPR004550 L-asparaginase, type II YPDSF_2309 IPR020827 Asparaginase/glutaminase, active site 1 YPDSF_2309 IPR036152 Asparaginase/glutaminase-like superfamily YPDSF_2309 IPR040919 Asparaginase/glutaminase, C-terminal YPDSF_2309 IPR006034 Asparaginase/glutaminase-like YPDSF_2309 IPR027475 Asparaginase/glutaminase, active site 2 YPDSF_2309 IPR027473 L-asparaginase, C-terminal YPDSF_2309 IPR037152 L-asparaginase, N-terminal domain superfamily YPDSF_2310 IPR041080 YcaO cyclodehydratase, C-terminal YPDSF_2310 IPR003776 YcaO-like domain YPDSF_2311 IPR023271 Aquaporin-like YPDSF_2311 IPR000292 Formate/nitrite transporter YPDSF_2311 IPR024002 Formate/nitrite transporter, conserved site YPDSF_2311 IPR023999 Formate transporter FocA, putative YPDSF_2312 IPR019777 Formate C-acetyltransferase glycine radical, conserved site YPDSF_2312 IPR005949 Formate acetyltransferase YPDSF_2312 IPR001150 Glycine radical domain YPDSF_2312 IPR004184 Pyruvate formate lyase domain YPDSF_2314 IPR013785 Aldolase-type TIM barrel YPDSF_2314 IPR007197 Radical SAM YPDSF_2314 IPR001989 Radical-activating enzyme, conserved site YPDSF_2314 IPR034457 Organic radical-activating enzymes YPDSF_2314 IPR034465 Pyruvate formate-lyase activase YPDSF_2314 IPR012838 Pyruvate formate-lyase 1 activating enzyme YPDSF_2314 IPR012839 Organic radical enzyme activase YPDSF_2315 IPR023745 MSF-type transporter, YcaD YPDSF_2315 IPR036259 MFS transporter superfamily YPDSF_2315 IPR011701 Major facilitator superfamily YPDSF_2315 IPR020846 Major facilitator superfamily domain YPDSF_2316 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) YPDSF_2316 IPR002317 Serine-tRNA ligase, type1 YPDSF_2316 IPR015866 Serine-tRNA synthetase, type1, N-terminal YPDSF_2316 IPR006195 Aminoacyl-tRNA synthetase, class II YPDSF_2316 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily YPDSF_2316 IPR033729 Serine-tRNA ligase catalytic core domain YPDSF_2316 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm YPDSF_2317 IPR003593 AAA+ ATPase domain YPDSF_2317 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2317 IPR032423 AAA C-terminal domain YPDSF_2317 IPR021886 MgsA AAA+ ATPase C-terminal YPDSF_2317 IPR003959 ATPase, AAA-type, core YPDSF_2317 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YPDSF_2318 IPR029046 Lipoprotein localisation LolA/LolB/LppX YPDSF_2318 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria YPDSF_2318 IPR004564 Outer membrane lipoprotein carrier protein LolA-like YPDSF_2319 IPR025199 DNA translocase FtsK, 4TM region YPDSF_2319 IPR018541 FtsK gamma domain YPDSF_2319 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2319 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2319 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_2319 IPR002543 FtsK domain YPDSF_2319 IPR041027 FtsK alpha domain YPDSF_2320 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YPDSF_2320 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2320 IPR011991 ArsR-like helix-turn-helix domain YPDSF_2320 IPR000485 AsnC-type HTH domain YPDSF_2320 IPR011008 Dimeric alpha-beta barrel YPDSF_2320 IPR019888 Transcription regulator AsnC-type YPDSF_2320 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_2320 IPR019885 Transcription regulator HTH, AsnC-type, conserved site YPDSF_2321 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site YPDSF_2321 IPR005982 Thioredoxin reductase YPDSF_2321 IPR023753 FAD/NAD(P)-binding domain YPDSF_2321 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_2322 IPR011527 ABC transporter type 1, transmembrane domain YPDSF_2322 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPDSF_2322 IPR003439 ABC transporter-like YPDSF_2322 IPR039421 Type I protein exporter YPDSF_2322 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2322 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD YPDSF_2322 IPR017871 ABC transporter, conserved site YPDSF_2322 IPR003593 AAA+ ATPase domain YPDSF_2323 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2323 IPR003593 AAA+ ATPase domain YPDSF_2323 IPR003439 ABC transporter-like YPDSF_2323 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC YPDSF_2323 IPR011527 ABC transporter type 1, transmembrane domain YPDSF_2323 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPDSF_2323 IPR017871 ABC transporter, conserved site YPDSF_2324 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase YPDSF_2324 IPR016181 Acyl-CoA N-acyltransferase YPDSF_2324 IPR042203 Leucyl/phenylalanyl-tRNA-protein transferase, C-terminal YPDSF_2325 IPR006196 RNA-binding domain, S1, IF1 type YPDSF_2325 IPR022967 RNA-binding domain, S1 YPDSF_2325 IPR012340 Nucleic acid-binding, OB-fold YPDSF_2325 IPR004368 Translation initiation factor IF-1 YPDSF_2327 IPR028299 ClpA/B, conserved site 2 YPDSF_2327 IPR001270 ClpA/B family YPDSF_2327 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA YPDSF_2327 IPR004176 Clp, N-terminal YPDSF_2327 IPR036628 Clp, N-terminal domain superfamily YPDSF_2327 IPR019489 Clp ATPase, C-terminal YPDSF_2327 IPR003959 ATPase, AAA-type, core YPDSF_2327 IPR003593 AAA+ ATPase domain YPDSF_2327 IPR041546 ClpA/ClpB, AAA lid domain YPDSF_2327 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2327 IPR018368 ClpA/B, conserved site 1 YPDSF_2328 IPR022935 ATP-dependent Clp protease adaptor protein ClpS YPDSF_2328 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like YPDSF_2328 IPR003769 Adaptor protein ClpS, core YPDSF_2330 IPR012156 Cold shock, CspA YPDSF_2330 IPR012340 Nucleic acid-binding, OB-fold YPDSF_2330 IPR011129 Cold shock domain YPDSF_2330 IPR012751 CspD, cold shock YPDSF_2330 IPR002059 Cold-shock protein, DNA-binding YPDSF_2330 IPR019844 Cold-shock (CSD) domain YPDSF_2331 IPR003838 ABC transporter permease protein domain YPDSF_2331 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2331 IPR003593 AAA+ ATPase domain YPDSF_2331 IPR025857 MacB-like periplasmic core domain YPDSF_2331 IPR003439 ABC transporter-like YPDSF_2331 IPR017871 ABC transporter, conserved site YPDSF_2331 IPR017911 ABC transporter, macrolide export, ATP-binding domain YPDSF_2332 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPDSF_2332 IPR006143 RND efflux pump, membrane fusion protein YPDSF_2332 IPR030190 Macrolide export protein MacA YPDSF_2334 IPR007488 Protein of unknown function DUF535 YPDSF_2335 IPR034139 OLD protein-like, TOPRIM domain YPDSF_2335 IPR006171 TOPRIM domain YPDSF_2335 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2335 IPR022602 Protein of unknown function DUF2813 YPDSF_2336 IPR005642 Lysine exporter LysO YPDSF_2337 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase YPDSF_2337 IPR010048 Hydroxylamine reductase YPDSF_2337 IPR016099 Prismane-like, alpha/beta-sandwich YPDSF_2337 IPR011254 Prismane-like superfamily YPDSF_2337 IPR016100 Prismane, alpha-bundle YPDSF_2338 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPDSF_2338 IPR017927 FAD-binding domain, ferredoxin reductase-type YPDSF_2338 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPDSF_2338 IPR012675 Beta-grasp domain superfamily YPDSF_2338 IPR036010 2Fe-2S ferredoxin-like superfamily YPDSF_2338 IPR000951 Phthalate dioxygenase reductase YPDSF_2338 IPR017938 Riboflavin synthase-like beta-barrel YPDSF_2338 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPDSF_2338 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPDSF_2339 IPR029061 Thiamin diphosphate-binding fold YPDSF_2339 IPR012000 Thiamine pyrophosphate enzyme, central domain YPDSF_2339 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPDSF_2339 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPDSF_2339 IPR000399 TPP-binding enzyme, conserved site YPDSF_2339 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPDSF_2340 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase YPDSF_2340 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_2340 IPR023603 Threonine aldolase YPDSF_2340 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_2340 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_2341 IPR021295 Protein of unknown function DUF2867 YPDSF_2341 IPR036291 NAD(P)-binding domain superfamily YPDSF_2341 IPR016040 NAD(P)-binding domain YPDSF_2342 IPR036291 NAD(P)-binding domain superfamily YPDSF_2342 IPR001509 NAD-dependent epimerase/dehydratase YPDSF_2343 IPR024289 Domain of unknown function DUF3828 YPDSF_2345 IPR002701 Chorismate mutase II, prokaryotic-type YPDSF_2345 IPR008240 Chorismate mutase, periplasmic YPDSF_2345 IPR036263 Chorismate mutase type II superfamily YPDSF_2346 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2346 IPR017871 ABC transporter, conserved site YPDSF_2346 IPR003439 ABC transporter-like YPDSF_2346 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type YPDSF_2346 IPR003593 AAA+ ATPase domain YPDSF_2347 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPDSF_2347 IPR018313 Solute-binding protein family 3, conserved site YPDSF_2347 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YPDSF_2347 IPR001320 Ionotropic glutamate receptor YPDSF_2348 IPR035906 MetI-like superfamily YPDSF_2348 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_2348 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPDSF_2349 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPDSF_2349 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_2349 IPR035906 MetI-like superfamily YPDSF_2351 IPR000620 EamA domain YPDSF_2352 IPR016935 Opine metallophore dehydrogenase YPDSF_2352 IPR036291 NAD(P)-binding domain superfamily YPDSF_2353 IPR004298 Nicotianamine synthase YPDSF_2353 IPR036291 NAD(P)-binding domain superfamily YPDSF_2354 IPR017871 ABC transporter, conserved site YPDSF_2354 IPR003593 AAA+ ATPase domain YPDSF_2354 IPR003439 ABC transporter-like YPDSF_2354 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2355 IPR037294 ABC transporter, BtuC-like YPDSF_2355 IPR000522 ABC transporter, permease protein, BtuC-like YPDSF_2359 IPR001320 Ionotropic glutamate receptor YPDSF_2359 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YPDSF_2359 IPR018313 Solute-binding protein family 3, conserved site YPDSF_2359 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPDSF_2360 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_2360 IPR030390 RNA methyltransferase TrmA, active site YPDSF_2360 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC YPDSF_2360 IPR030391 RNA methyltransferase TrmA, conserved site YPDSF_2360 IPR010280 (Uracil-5)-methyltransferase family YPDSF_2361 IPR019703 Protein of unknown function DUF2593 YPDSF_2362 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_2362 IPR035906 MetI-like superfamily YPDSF_2363 IPR035906 MetI-like superfamily YPDSF_2363 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_2364 IPR013611 Transport-associated OB, type 2 YPDSF_2364 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit YPDSF_2364 IPR003439 ABC transporter-like YPDSF_2364 IPR008995 Molybdate/tungstate binding, C-terminal YPDSF_2364 IPR017871 ABC transporter, conserved site YPDSF_2364 IPR003593 AAA+ ATPase domain YPDSF_2364 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2366 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein YPDSF_2366 IPR006059 Bacterial extracellular solute-binding protein YPDSF_2367 IPR019660 Putative sensory transduction regulator YbjN YPDSF_2368 IPR010815 Protein of unknown function DUF1418 YPDSF_2369 IPR002109 Glutaredoxin YPDSF_2369 IPR011767 Glutaredoxin active site YPDSF_2369 IPR014025 Glutaredoxin subgroup YPDSF_2369 IPR011902 Glutaredoxin, GrxA YPDSF_2369 IPR036249 Thioredoxin-like superfamily YPDSF_2370 IPR006037 Regulator of K+ conductance, C-terminal YPDSF_2370 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily YPDSF_2370 IPR023017 Transport protein YbjL, putative YPDSF_2370 IPR006512 YidE/YbjL duplication YPDSF_2372 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily YPDSF_2372 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YPDSF_2372 IPR033879 Undecaprenyl-diphosphatase YPDSF_2373 IPR028581 Deoxyribose-phosphate aldolase type I YPDSF_2373 IPR002915 DeoC/FbaB/ lacD aldolase YPDSF_2373 IPR013785 Aldolase-type TIM barrel YPDSF_2373 IPR011343 Deoxyribose-phosphate aldolase YPDSF_2374 IPR014036 DeoR C-terminal sensor domain YPDSF_2374 IPR001034 DeoR-type HTH domain YPDSF_2374 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPDSF_2374 IPR037171 NagB/RpiA transferase-like YPDSF_2375 IPR004694 Hydroxy amino acid transporter YPDSF_2376 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A YPDSF_2376 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal YPDSF_2376 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily YPDSF_2376 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal YPDSF_2376 IPR015956 Penicillin-binding protein, C-terminal domain superfamily YPDSF_2376 IPR012338 Beta-lactamase/transpeptidase-like YPDSF_2377 IPR035906 MetI-like superfamily YPDSF_2377 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_2378 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal YPDSF_2378 IPR017871 ABC transporter, conserved site YPDSF_2378 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2378 IPR018449 NIL domain YPDSF_2378 IPR026253 Methionine import ATP-binding protein MetN YPDSF_2378 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain YPDSF_2378 IPR003593 AAA+ ATPase domain YPDSF_2378 IPR003439 ABC transporter-like YPDSF_2379 IPR004872 Lipoprotein NlpA family YPDSF_2381 IPR036412 HAD-like superfamily YPDSF_2381 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like YPDSF_2381 IPR023214 HAD superfamily YPDSF_2382 IPR036249 Thioredoxin-like superfamily YPDSF_2382 IPR004045 Glutathione S-transferase, N-terminal YPDSF_2382 IPR010987 Glutathione S-transferase, C-terminal-like YPDSF_2382 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YPDSF_2382 IPR004046 Glutathione S-transferase, C-terminal YPDSF_2383 IPR039426 Vitamin B12 transporter BtuB-like YPDSF_2383 IPR012910 TonB-dependent receptor, plug domain YPDSF_2383 IPR037066 TonB-dependent receptor, plug domain superfamily YPDSF_2383 IPR000531 TonB-dependent receptor-like, beta-barrel YPDSF_2383 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPDSF_2383 IPR010917 TonB-dependent receptor, conserved site YPDSF_2383 IPR010916 TonB box, conserved site YPDSF_2384 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2384 IPR003593 AAA+ ATPase domain YPDSF_2384 IPR003439 ABC transporter-like YPDSF_2384 IPR015863 ABC transporter, hemin import, HmuV YPDSF_2385 IPR000522 ABC transporter, permease protein, BtuC-like YPDSF_2385 IPR037294 ABC transporter, BtuC-like YPDSF_2388 IPR004841 Amino acid permease/ SLC12A domain YPDSF_2388 IPR004840 Amino acid permease, conserved site YPDSF_2389 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2389 IPR000847 Transcription regulator HTH, LysR YPDSF_2389 IPR005119 LysR, substrate-binding YPDSF_2389 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_2390 IPR004630 Uncharacterised protein family UPF0324, bacteria YPDSF_2390 IPR018383 Uncharacterised protein family UPF0324, prokaryote YPDSF_2391 IPR013022 Xylose isomerase-like, TIM barrel domain YPDSF_2391 IPR036237 Xylose isomerase-like superfamily YPDSF_2391 IPR018246 AP endonuclease 2, zinc binding site YPDSF_2391 IPR001719 AP endonuclease 2 YPDSF_2392 IPR037224 PapC, N-terminal domain superfamily YPDSF_2392 IPR000015 Outer membrane usher protein YPDSF_2392 IPR042186 Outer membrane usher protein FimD, plug domain YPDSF_2392 IPR025949 PapC-like, C-terminal domain YPDSF_2392 IPR018030 Fimbrial membrane usher, conserved site YPDSF_2392 IPR025885 PapC, N-terminal domain YPDSF_2393 IPR001829 Pili assembly chaperone, bacterial YPDSF_2393 IPR018046 Pili assembly chaperone, conserved site YPDSF_2393 IPR013783 Immunoglobulin-like fold YPDSF_2393 IPR008962 PapD-like superfamily YPDSF_2393 IPR016147 Pili assembly chaperone, N-terminal YPDSF_2393 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPDSF_2393 IPR016148 Pili assembly chaperone, C-terminal YPDSF_2395 IPR035182 Protein of unknown function PsaF YPDSF_2396 IPR016032 Signal transduction response regulator, C-terminal effector YPDSF_2396 IPR001867 OmpR/PhoB-type DNA-binding domain YPDSF_2396 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2397 IPR036095 PTS system IIB component-like superfamily YPDSF_2397 IPR013011 Phosphotransferase system, EIIB component, type 2 YPDSF_2397 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPDSF_2397 IPR013014 Phosphotransferase system, EIIC component, type 2 YPDSF_2397 IPR003352 Phosphotransferase system, EIIC YPDSF_2397 IPR003353 Phosphotransferase system, fructose-specific IIB subunit YPDSF_2397 IPR006327 Phosphotransferase system, fructose IIC component YPDSF_2398 IPR017583 Tagatose/fructose phosphokinase YPDSF_2398 IPR022463 Fructose 1-phosphate kinase YPDSF_2398 IPR029056 Ribokinase-like YPDSF_2398 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPDSF_2398 IPR011611 Carbohydrate kinase PfkB YPDSF_2399 IPR016152 Phosphotransferase/anion transporter YPDSF_2399 IPR002178 PTS EIIA type-2 domain YPDSF_2399 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YPDSF_2399 IPR035895 HPr-like superfamily YPDSF_2399 IPR000032 Phosphocarrier protein HPr-like YPDSF_2399 IPR002114 Phosphotransferase system, HPr serine phosphorylation site YPDSF_2400 IPR000086 NUDIX hydrolase domain YPDSF_2400 IPR020476 NUDIX hydrolase YPDSF_2400 IPR020084 NUDIX hydrolase, conserved site YPDSF_2400 IPR015797 NUDIX hydrolase-like domain superfamily YPDSF_2401 IPR001851 ABC transporter, permease YPDSF_2402 IPR003593 AAA+ ATPase domain YPDSF_2402 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2402 IPR015861 ABC transporter, ribose import, RbsA YPDSF_2402 IPR017871 ABC transporter, conserved site YPDSF_2402 IPR003439 ABC transporter-like YPDSF_2404 IPR037171 NagB/RpiA transferase-like YPDSF_2404 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup YPDSF_2404 IPR004788 Ribose 5-phosphate isomerase, type A YPDSF_2405 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPDSF_2405 IPR018483 Carbohydrate kinase, FGGY, conserved site YPDSF_2405 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPDSF_2405 IPR000577 Carbohydrate kinase, FGGY YPDSF_2405 IPR006000 Xylulokinase YPDSF_2406 IPR016160 Aldehyde dehydrogenase, cysteine active site YPDSF_2406 IPR010102 Succinate semialdehyde dehydrogenase YPDSF_2406 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPDSF_2406 IPR015590 Aldehyde dehydrogenase domain YPDSF_2406 IPR016162 Aldehyde dehydrogenase, N-terminal YPDSF_2406 IPR016161 Aldehyde/histidinol dehydrogenase YPDSF_2406 IPR016163 Aldehyde dehydrogenase, C-terminal YPDSF_2408 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPDSF_2408 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPDSF_2408 IPR002912 ACT domain YPDSF_2408 IPR006236 D-3-phosphoglycerate dehydrogenase YPDSF_2408 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPDSF_2408 IPR036291 NAD(P)-binding domain superfamily YPDSF_2408 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPDSF_2408 IPR029009 Allosteric substrate binding domain superfamily YPDSF_2409 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPDSF_2409 IPR036291 NAD(P)-binding domain superfamily YPDSF_2409 IPR002347 Short-chain dehydrogenase/reductase SDR YPDSF_2410 IPR005358 Putative zinc- or iron-chelating domain containing protein YPDSF_2411 IPR018227 Amino acid/polyamine transporter 2 YPDSF_2411 IPR013059 Tryptophan/tyrosine transporter YPDSF_2412 IPR008991 Translation protein SH3-like domain superfamily YPDSF_2412 IPR013852 Translation elongation factor P/YeiP, conserved site YPDSF_2412 IPR001059 Translation elongation factor P/YeiP, central YPDSF_2412 IPR011897 Translation elongation factor P-like, YeiP YPDSF_2412 IPR013185 Translation elongation factor, KOW-like YPDSF_2412 IPR020599 Translation elongation factor P/YeiP YPDSF_2412 IPR014722 Ribosomal protein L2, domain 2 YPDSF_2412 IPR012340 Nucleic acid-binding, OB-fold YPDSF_2412 IPR015365 Elongation factor P, C-terminal YPDSF_2413 IPR004628 Mannonate dehydratase YPDSF_2413 IPR036237 Xylose isomerase-like superfamily YPDSF_2414 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPDSF_2414 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPDSF_2414 IPR000669 Mannitol dehydrogenase YPDSF_2414 IPR013118 Mannitol dehydrogenase, C-terminal YPDSF_2414 IPR023027 Mannitol dehydrogenase, conserved site YPDSF_2414 IPR013131 Mannitol dehydrogenase, N-terminal YPDSF_2414 IPR036291 NAD(P)-binding domain superfamily YPDSF_2415 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2415 IPR000524 Transcription regulator HTH, GntR YPDSF_2415 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_2415 IPR008920 Transcription regulator FadR/GntR, C-terminal YPDSF_2415 IPR011711 GntR, C-terminal YPDSF_2417 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2417 IPR003495 CobW/HypB/UreG, nucleotide-binding domain YPDSF_2417 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal YPDSF_2418 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily YPDSF_2418 IPR032908 Lipid A 1-diphosphate synthase YPDSF_2418 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YPDSF_2419 IPR038765 Papain-like cysteine peptidase superfamily YPDSF_2419 IPR000064 Endopeptidase, NLPC/P60 domain YPDSF_2420 IPR001633 EAL domain YPDSF_2420 IPR035919 EAL domain superfamily YPDSF_2420 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain YPDSF_2421 IPR030678 Peptide/nickel binding protein, MppA-type YPDSF_2421 IPR000914 Solute-binding protein family 5 domain YPDSF_2421 IPR039424 Solute-binding protein family 5 YPDSF_2422 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_2422 IPR035906 MetI-like superfamily YPDSF_2423 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_2423 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPDSF_2423 IPR035906 MetI-like superfamily YPDSF_2424 IPR003439 ABC transporter-like YPDSF_2424 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2424 IPR003593 AAA+ ATPase domain YPDSF_2424 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPDSF_2424 IPR017871 ABC transporter, conserved site YPDSF_2425 IPR020489 Uncharacterised protein family YejG YPDSF_2427 IPR004812 Drug resistance transporter Bcr/CmlA subfamily YPDSF_2427 IPR011701 Major facilitator superfamily YPDSF_2427 IPR020846 Major facilitator superfamily domain YPDSF_2427 IPR036259 MFS transporter superfamily YPDSF_2427 IPR004734 Multidrug resistance protein YPDSF_2428 IPR036986 RNA-binding S4 domain superfamily YPDSF_2428 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site YPDSF_2428 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F YPDSF_2428 IPR006145 Pseudouridine synthase, RsuA/RluA YPDSF_2428 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPDSF_2428 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain YPDSF_2428 IPR002942 RNA-binding S4 domain YPDSF_2429 IPR011332 Zinc-binding ribosomal protein YPDSF_2429 IPR001650 Helicase, C-terminal YPDSF_2429 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPDSF_2429 IPR006935 Helicase/UvrB, N-terminal YPDSF_2429 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2430 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal YPDSF_2430 IPR029751 Ribosomal protein L25 YPDSF_2430 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily YPDSF_2430 IPR020055 Ribosomal protein L25, short-form YPDSF_2431 IPR036515 Transposase IS200-like superfamily YPDSF_2431 IPR002686 Transposase IS200-like YPDSF_2432 IPR007358 Nucleoid-associated protein NdpA YPDSF_2433 IPR023202 YejL-like superfamily YPDSF_2433 IPR009857 Uncharacterised protein family UPF0352 YPDSF_2434 IPR012159 Inner membrane protein YejM YPDSF_2434 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPDSF_2434 IPR024588 Inner membrane protein YejM, N-terminal YPDSF_2434 IPR000917 Sulfatase, N-terminal YPDSF_2436 IPR008514 Type VI secretion system effector, Hcp YPDSF_2436 IPR003615 HNH nuclease YPDSF_2436 IPR036624 Hcp1-like superfamily YPDSF_2439 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site YPDSF_2439 IPR018120 Glycoside hydrolase family 1, active site YPDSF_2439 IPR001360 Glycoside hydrolase family 1 YPDSF_2439 IPR017853 Glycoside hydrolase superfamily YPDSF_2440 IPR035472 RpiR-like, SIS domain YPDSF_2440 IPR001347 Sugar isomerase (SIS) YPDSF_2440 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2440 IPR000281 Helix-turn-helix protein RpiR YPDSF_2440 IPR009057 Homeobox-like domain superfamily YPDSF_2441 IPR037053 Phage tail collar domain superfamily YPDSF_2441 IPR011083 Phage tail collar domain YPDSF_2444 IPR006949 Baseplate protein J-like YPDSF_2453 IPR007067 Tail sheath protein YPDSF_2453 IPR020287 Tail sheath protein, C-terminal domain YPDSF_2453 IPR035089 Tail sheath protein, subtilisin-like domain YPDSF_2457 IPR026040 Hydroxypyruvate isomerase-like YPDSF_2457 IPR036237 Xylose isomerase-like superfamily YPDSF_2457 IPR013022 Xylose isomerase-like, TIM barrel domain YPDSF_2458 IPR014036 DeoR C-terminal sensor domain YPDSF_2458 IPR001034 DeoR-type HTH domain YPDSF_2458 IPR037171 NagB/RpiA transferase-like YPDSF_2458 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2458 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_2458 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPDSF_2459 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPDSF_2459 IPR001303 Class II aldolase/adducin N-terminal YPDSF_2460 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily YPDSF_2460 IPR042213 Nucleotide-binding, C-terminal domain superfamily YPDSF_2460 IPR031475 Nucleotide-binding C-terminal domain YPDSF_2460 IPR010737 Four-carbon acid sugar kinase, N-terminal domain YPDSF_2461 IPR010534 Bacteriophage 933W, GpQ YPDSF_2462 IPR036286 LexA/Signal peptidase-like superfamily YPDSF_2462 IPR015927 Peptidase S24/S26A/S26B/S26C YPDSF_2462 IPR001387 Cro/C1-type helix-turn-helix domain YPDSF_2462 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPDSF_2462 IPR039418 LexA-like YPDSF_2464 IPR036687 DinI-like superfamily YPDSF_2464 IPR010391 DNA damage-inducible protein DinI-like YPDSF_2465 IPR020080 Outer membrane adhesin/peptidase omptin YPDSF_2465 IPR020079 Peptidase A26, omptin, conserved site YPDSF_2465 IPR000036 Peptidase A26, omptin YPDSF_2466 IPR033479 Double Cache domain 1 YPDSF_2466 IPR003660 HAMP domain YPDSF_2466 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPDSF_2466 IPR029151 Periplasmic sensor-like domain superfamily YPDSF_2466 IPR000727 Target SNARE coiled-coil homology domain YPDSF_2466 IPR004090 Chemotaxis methyl-accepting receptor YPDSF_2467 IPR001279 Metallo-beta-lactamase YPDSF_2467 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D YPDSF_2467 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPDSF_2468 IPR018043 Sodium:galactoside symporter, conserved site YPDSF_2468 IPR001927 Sodium:galactoside symporter YPDSF_2468 IPR039672 Lactose permease-like YPDSF_2468 IPR036259 MFS transporter superfamily YPDSF_2469 IPR012338 Beta-lactamase/transpeptidase-like YPDSF_2469 IPR001466 Beta-lactamase-related YPDSF_2470 IPR013793 Porin, Gram-negative type, conserved site YPDSF_2470 IPR001702 Porin, Gram-negative type YPDSF_2470 IPR001897 Porin, gammaproteobacterial YPDSF_2470 IPR023614 Porin domain superfamily YPDSF_2473 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPDSF_2473 IPR003594 Histidine kinase/HSP90-like ATPase YPDSF_2473 IPR032306 Phosphotransferase RcsD, RcsD-ABL domain YPDSF_2473 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_2473 IPR030861 Phosphotransferase RcsD YPDSF_2473 IPR036641 HPT domain superfamily YPDSF_2473 IPR038616 Phosphotransferase RcsD, RcsD-ABL domain superfamily YPDSF_2473 IPR005467 Histidine kinase domain YPDSF_2474 IPR030861 Phosphotransferase RcsD YPDSF_2474 IPR032306 Phosphotransferase RcsD, RcsD-ABL domain YPDSF_2474 IPR036641 HPT domain superfamily YPDSF_2474 IPR005467 Histidine kinase domain YPDSF_2474 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_2474 IPR003594 Histidine kinase/HSP90-like ATPase YPDSF_2474 IPR038616 Phosphotransferase RcsD, RcsD-ABL domain superfamily YPDSF_2474 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPDSF_2475 IPR011006 CheY-like superfamily YPDSF_2475 IPR030864 Transcriptional regulatory protein RcsB YPDSF_2475 IPR016032 Signal transduction response regulator, C-terminal effector YPDSF_2475 IPR001789 Signal transduction response regulator, receiver domain YPDSF_2475 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2475 IPR000792 Transcription regulator LuxR, C-terminal YPDSF_2476 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPDSF_2476 IPR003594 Histidine kinase/HSP90-like ATPase YPDSF_2476 IPR019017 Signal transduction histidine kinase RcsC, alpha-beta loop, C-terminal YPDSF_2476 IPR038388 RcsC, C-terminal domain superfamily YPDSF_2476 IPR030856 Sensor histidine kinase RcsC YPDSF_2476 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPDSF_2476 IPR001789 Signal transduction response regulator, receiver domain YPDSF_2476 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPDSF_2476 IPR005467 Histidine kinase domain YPDSF_2476 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_2476 IPR011006 CheY-like superfamily YPDSF_2477 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal YPDSF_2477 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta YPDSF_2477 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily YPDSF_2477 IPR005743 DNA gyrase, subunit A YPDSF_2477 IPR013760 DNA topoisomerase, type IIA-like domain superfamily YPDSF_2477 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat YPDSF_2477 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal YPDSF_2478 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_2478 IPR010233 Ubiquinone biosynthesis O-methyltransferase YPDSF_2479 IPR005144 ATP-cone domain YPDSF_2479 IPR013346 Ribonucleotide reductase, class I , alpha subunit YPDSF_2479 IPR000788 Ribonucleotide reductase large subunit, C-terminal YPDSF_2479 IPR013509 Ribonucleotide reductase large subunit, N-terminal YPDSF_2479 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal YPDSF_2479 IPR039718 Ribonucleoside-diphosphate reductase large subunit YPDSF_2480 IPR009078 Ferritin-like superfamily YPDSF_2480 IPR000358 Ribonucleotide reductase small subunit family YPDSF_2480 IPR030475 Ribonucleotide reductase small subunit, acitve site YPDSF_2480 IPR033909 Ribonucleotide reductase small subunit YPDSF_2480 IPR012348 Ribonucleotide reductase-like YPDSF_2481 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPDSF_2481 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPDSF_2481 IPR036010 2Fe-2S ferredoxin-like superfamily YPDSF_2481 IPR012675 Beta-grasp domain superfamily YPDSF_2482 IPR023084 Proteinase inhibitor I11, ecotin, gammaproteobacteria YPDSF_2482 IPR036198 Ecotin superfamily YPDSF_2482 IPR005658 Proteinase inhibitor I11, ecotin YPDSF_2483 IPR001453 MoaB/Mog domain YPDSF_2483 IPR036425 MoaB/Mog-like domain superfamily YPDSF_2483 IPR008135 Competence-induced protein CinA YPDSF_2483 IPR036653 CinA-like, C-terminal YPDSF_2484 IPR013059 Tryptophan/tyrosine transporter YPDSF_2484 IPR013061 Tryptophan/tryrosine permease, conserved site YPDSF_2484 IPR018227 Amino acid/polyamine transporter 2 YPDSF_2485 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPDSF_2485 IPR023614 Porin domain superfamily YPDSF_2485 IPR009998 YfaZ YPDSF_2486 IPR020835 Catalase superfamily YPDSF_2486 IPR018028 Catalase, mono-functional, haem-containing YPDSF_2486 IPR002226 Catalase haem-binding site YPDSF_2486 IPR037060 Catalase core domain superfamily YPDSF_2486 IPR011614 Catalase core domain YPDSF_2486 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 YPDSF_2486 IPR024708 Catalase active site YPDSF_2486 IPR040333 Catalase, clade 3 YPDSF_2486 IPR010582 Catalase immune-responsive domain YPDSF_2487 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type YPDSF_2487 IPR010614 DEAD2 YPDSF_2487 IPR039000 ATP-dependent DNA helicase DinG YPDSF_2487 IPR006554 Helicase-like, DEXD box c2 type YPDSF_2487 IPR006555 ATP-dependent helicase, C-terminal YPDSF_2487 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2487 IPR001650 Helicase, C-terminal YPDSF_2487 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPDSF_2488 IPR001702 Porin, Gram-negative type YPDSF_2488 IPR001897 Porin, gammaproteobacterial YPDSF_2488 IPR023614 Porin domain superfamily YPDSF_2488 IPR033900 Porin domain, Gram-negative type YPDSF_2488 IPR013793 Porin, Gram-negative type, conserved site YPDSF_2490 IPR004779 Carboxylate/Amino Acid/Amine Transporter YPDSF_2490 IPR000620 EamA domain YPDSF_2492 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal YPDSF_2492 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_2492 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_2492 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_2492 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily YPDSF_2492 IPR000310 Orn/Lys/Arg decarboxylase, major domain YPDSF_2492 IPR011193 Ornithine/lysine/arginine decarboxylase YPDSF_2492 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal YPDSF_2493 IPR001207 Transposase, mutator type YPDSF_2494 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_2494 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_2494 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal YPDSF_2494 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily YPDSF_2494 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal YPDSF_2494 IPR000310 Orn/Lys/Arg decarboxylase, major domain YPDSF_2494 IPR011193 Ornithine/lysine/arginine decarboxylase YPDSF_2494 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_2495 IPR002293 Amino acid/polyamine transporter I YPDSF_2497 IPR035906 MetI-like superfamily YPDSF_2497 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_2498 IPR003593 AAA+ ATPase domain YPDSF_2498 IPR003439 ABC transporter-like YPDSF_2498 IPR017871 ABC transporter, conserved site YPDSF_2498 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2499 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_2499 IPR035906 MetI-like superfamily YPDSF_2500 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain YPDSF_2501 IPR001307 Thiosulphate sulfurtransferase, conserved site YPDSF_2501 IPR036873 Rhodanese-like domain superfamily YPDSF_2501 IPR001763 Rhodanese-like domain YPDSF_2504 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2504 IPR017871 ABC transporter, conserved site YPDSF_2504 IPR003439 ABC transporter-like YPDSF_2504 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein YPDSF_2504 IPR003593 AAA+ ATPase domain YPDSF_2505 IPR005876 Cobalt transport protein ATP-binding subunit YPDSF_2505 IPR003593 AAA+ ATPase domain YPDSF_2505 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2505 IPR017871 ABC transporter, conserved site YPDSF_2505 IPR003439 ABC transporter-like YPDSF_2506 IPR001851 ABC transporter, permease YPDSF_2507 IPR001851 ABC transporter, permease YPDSF_2508 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPDSF_2508 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPDSF_2508 IPR025944 Sigma-54 interaction domain, conserved site YPDSF_2508 IPR028082 Periplasmic binding protein-like I YPDSF_2508 IPR002078 RNA polymerase sigma factor 54 interaction domain YPDSF_2508 IPR000014 PAS domain YPDSF_2508 IPR003593 AAA+ ATPase domain YPDSF_2508 IPR009057 Homeobox-like domain superfamily YPDSF_2508 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2508 IPR002197 DNA binding HTH domain, Fis-type YPDSF_2509 IPR009921 Domain of unknown function DUF1456 YPDSF_2510 IPR005769 ABC transporter, permease PhnE/PtxC YPDSF_2510 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_2510 IPR035906 MetI-like superfamily YPDSF_2511 IPR005769 ABC transporter, permease PhnE/PtxC YPDSF_2511 IPR035906 MetI-like superfamily YPDSF_2511 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_2512 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein YPDSF_2513 IPR003439 ABC transporter-like YPDSF_2513 IPR003593 AAA+ ATPase domain YPDSF_2513 IPR012693 ABC transporter, phosphonate import, PhnC YPDSF_2513 IPR017871 ABC transporter, conserved site YPDSF_2513 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2514 IPR007341 Transglycosylase-associated protein YPDSF_2517 IPR003615 HNH nuclease YPDSF_2517 IPR002711 HNH endonuclease YPDSF_2518 IPR033469 CYTH-like domain superfamily YPDSF_2518 IPR023577 CYTH domain YPDSF_2518 IPR008173 Adenylyl cyclase CyaB YPDSF_2519 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 YPDSF_2519 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 YPDSF_2519 IPR012256 D-lactate dehydrogenase YPDSF_2519 IPR016166 FAD-binding domain, PCMH-type YPDSF_2519 IPR036318 FAD-binding, type PCMH-like superfamily YPDSF_2519 IPR016167 FAD-binding, type PCMH, subdomain 1 YPDSF_2519 IPR016169 FAD-binding, type PCMH, subdomain 2 YPDSF_2519 IPR016164 FAD-linked oxidase-like, C-terminal YPDSF_2519 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal YPDSF_2519 IPR006094 FAD linked oxidase, N-terminal YPDSF_2520 IPR012338 Beta-lactamase/transpeptidase-like YPDSF_2520 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal YPDSF_2520 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A YPDSF_2522 IPR042270 tRNA-dihydrouridine(16) synthase, C-terminal YPDSF_2522 IPR035587 DUS-like, FMN-binding domain YPDSF_2522 IPR001269 tRNA-dihydrouridine synthase YPDSF_2522 IPR018517 tRNA-dihydrouridine synthase, conserved site YPDSF_2522 IPR032886 tRNA-dihydrouridine(16) synthase YPDSF_2522 IPR013785 Aldolase-type TIM barrel YPDSF_2525 IPR004740 Nucleoside:H+ symporter YPDSF_2525 IPR020846 Major facilitator superfamily domain YPDSF_2525 IPR036259 MFS transporter superfamily YPDSF_2526 IPR000845 Nucleoside phosphorylase domain YPDSF_2526 IPR010943 Xanthosine phosphorylase YPDSF_2526 IPR035994 Nucleoside phosphorylase superfamily YPDSF_2526 IPR011268 Purine nucleoside phosphorylase YPDSF_2526 IPR018099 Purine phosphorylase, family 2, conserved site YPDSF_2528 IPR000847 Transcription regulator HTH, LysR YPDSF_2528 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2528 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_2528 IPR037409 HTH-type transcriptional regulator XapR, PBP2 domain YPDSF_2528 IPR005119 LysR, substrate-binding YPDSF_2529 IPR000060 BCCT transporter family YPDSF_2529 IPR018093 BCCT transporter, conserved site YPDSF_2530 IPR017757 Transcriptional repressor BetI YPDSF_2530 IPR001647 DNA-binding HTH domain, TetR-type YPDSF_2530 IPR009057 Homeobox-like domain superfamily YPDSF_2530 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YPDSF_2530 IPR039538 BetI-type transcriptional repressor, C-terminal YPDSF_2530 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPDSF_2531 IPR015590 Aldehyde dehydrogenase domain YPDSF_2531 IPR016162 Aldehyde dehydrogenase, N-terminal YPDSF_2531 IPR011264 Betaine aldehyde dehydrogenase YPDSF_2531 IPR016163 Aldehyde dehydrogenase, C-terminal YPDSF_2531 IPR016161 Aldehyde/histidinol dehydrogenase YPDSF_2531 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPDSF_2531 IPR016160 Aldehyde dehydrogenase, cysteine active site YPDSF_2532 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal YPDSF_2532 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal YPDSF_2532 IPR012132 Glucose-methanol-choline oxidoreductase YPDSF_2532 IPR027424 Glucose Oxidase, domain 2 YPDSF_2532 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_2532 IPR011533 Oxygen-dependent choline dehydrogenase YPDSF_2533 IPR002686 Transposase IS200-like YPDSF_2533 IPR036515 Transposase IS200-like superfamily YPDSF_2534 IPR006214 Bax inhibitor 1-related YPDSF_2535 IPR003448 Molybdopterin biosynthesis MoaE YPDSF_2535 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily YPDSF_2536 IPR003749 Sulfur carrier ThiS/MoaD-like YPDSF_2536 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp YPDSF_2536 IPR012675 Beta-grasp domain superfamily YPDSF_2537 IPR023045 Molybdenum cofactor biosynthesis C YPDSF_2537 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain YPDSF_2537 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily YPDSF_2538 IPR013785 Aldolase-type TIM barrel YPDSF_2538 IPR006638 Elp3/MiaB/NifB YPDSF_2538 IPR013483 Molybdenum cofactor biosynthesis protein A YPDSF_2538 IPR007197 Radical SAM YPDSF_2538 IPR010505 Molybdenum cofactor synthesis C-terminal YPDSF_2538 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site YPDSF_2539 IPR038136 Gluconeogenesis factor superfamily YPDSF_2539 IPR010119 Gluconeogenesis factor YPDSF_2539 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 YPDSF_2540 IPR018668 DNA-binding protein VF530-like YPDSF_2540 IPR036361 SAP domain superfamily YPDSF_2541 IPR001943 UVR domain YPDSF_2541 IPR001650 Helicase, C-terminal YPDSF_2541 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPDSF_2541 IPR041471 UvrB, interaction domain YPDSF_2541 IPR024759 UvrB, YAD/RRR-motif-containing domain YPDSF_2541 IPR036876 UVR domain superfamily YPDSF_2541 IPR006935 Helicase/UvrB, N-terminal YPDSF_2541 IPR004807 UvrABC system, subunit B YPDSF_2541 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2543 IPR004472 Dethiobiotin synthase BioD YPDSF_2543 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2544 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_2544 IPR013216 Methyltransferase type 11 YPDSF_2544 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC YPDSF_2545 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_2545 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type YPDSF_2545 IPR004839 Aminotransferase, class I/classII YPDSF_2545 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site YPDSF_2545 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_2545 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_2545 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria YPDSF_2546 IPR007197 Radical SAM YPDSF_2546 IPR013785 Aldolase-type TIM barrel YPDSF_2546 IPR010722 Biotin and thiamin synthesis-associated domain YPDSF_2546 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB YPDSF_2546 IPR024177 Biotin synthase YPDSF_2546 IPR006638 Elp3/MiaB/NifB YPDSF_2547 IPR005814 Aminotransferase class-III YPDSF_2547 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA YPDSF_2547 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_2547 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_2547 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_2548 IPR022528 6-phosphogluconolactonase, YbhE-type YPDSF_2548 IPR015943 WD40/YVTN repeat-like-containing domain superfamily YPDSF_2548 IPR019405 Lactonase, 7-bladed beta propeller YPDSF_2548 IPR011045 Nitrous oxide reductase, N-terminal YPDSF_2549 IPR023214 HAD superfamily YPDSF_2549 IPR006379 HAD-superfamily hydrolase, subfamily IIB YPDSF_2549 IPR036412 HAD-like superfamily YPDSF_2549 IPR000150 Cof family YPDSF_2550 IPR003593 AAA+ ATPase domain YPDSF_2550 IPR003439 ABC transporter-like YPDSF_2550 IPR017871 ABC transporter, conserved site YPDSF_2550 IPR015852 ABC transporter, molybdenum import, ModC YPDSF_2550 IPR011868 Molybdate ABC transporter, ATP-binding protein YPDSF_2550 IPR004606 Molybdenum-pterin binding YPDSF_2550 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2550 IPR005116 Transport-associated OB, type 1 YPDSF_2550 IPR008995 Molybdate/tungstate binding, C-terminal YPDSF_2551 IPR011867 Molybdate ABC transporter, permease protein YPDSF_2551 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_2551 IPR035906 MetI-like superfamily YPDSF_2552 IPR005950 Molybdate ABC transporter, substrate-binding protein YPDSF_2553 IPR019702 Multidrug efflux pump accessory protein AcrZ YPDSF_2554 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2554 IPR005116 Transport-associated OB, type 1 YPDSF_2554 IPR004606 Molybdenum-pterin binding YPDSF_2554 IPR003725 Molybdenum-binding protein ModE, N-terminal YPDSF_2554 IPR016462 Molybdate-dependent transcriptional regulator ModE YPDSF_2554 IPR008995 Molybdate/tungstate binding, C-terminal YPDSF_2554 IPR000847 Transcription regulator HTH, LysR YPDSF_2554 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_2555 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2555 IPR003439 ABC transporter-like YPDSF_2555 IPR003593 AAA+ ATPase domain YPDSF_2558 IPR005886 UDP-glucose 4-epimerase YPDSF_2558 IPR036291 NAD(P)-binding domain superfamily YPDSF_2558 IPR016040 NAD(P)-binding domain YPDSF_2559 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site YPDSF_2559 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal YPDSF_2559 IPR001937 Galactose-1-phosphate uridyl transferase, class I YPDSF_2559 IPR036265 HIT-like superfamily YPDSF_2559 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal YPDSF_2560 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPDSF_2560 IPR036554 GHMP kinase, C-terminal domain superfamily YPDSF_2560 IPR020568 Ribosomal protein S5 domain 2-type fold YPDSF_2560 IPR006204 GHMP kinase N-terminal domain YPDSF_2560 IPR013750 GHMP kinase, C-terminal domain YPDSF_2560 IPR019539 Galactokinase galactose-binding domain YPDSF_2560 IPR006203 GHMP kinase, ATP-binding, conserved site YPDSF_2560 IPR019741 Galactokinase, conserved site YPDSF_2560 IPR022963 Galactokinase, bacterial YPDSF_2560 IPR000705 Galactokinase YPDSF_2560 IPR006206 Mevalonate/galactokinase YPDSF_2562 IPR013458 Aldose 1-epimerase, bacterial YPDSF_2562 IPR018052 Aldose 1-epimerase, conserved site YPDSF_2562 IPR014718 Glycoside hydrolase-type carbohydrate-binding YPDSF_2562 IPR015443 Aldose 1-epimerase YPDSF_2562 IPR011013 Galactose mutarotase-like domain superfamily YPDSF_2562 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase YPDSF_2564 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site YPDSF_2564 IPR005952 Phosphoglycerate mutase 1 YPDSF_2564 IPR013078 Histidine phosphatase superfamily, clade-1 YPDSF_2564 IPR029033 Histidine phosphatase superfamily YPDSF_2567 IPR027469 Cation efflux transmembrane domain superfamily YPDSF_2567 IPR036837 Cation efflux protein, cytoplasmic domain superfamily YPDSF_2567 IPR002524 Cation efflux protein YPDSF_2567 IPR023500 Zinc transporter ZitB YPDSF_2568 IPR006419 Nicotinamide mononucleotide transporter PnuC YPDSF_2569 IPR003473 Quinolinate synthetase A YPDSF_2569 IPR036094 Quinolinate synthetase A superfamily YPDSF_2569 IPR023513 Quinolinate synthase A, type 1 YPDSF_2570 IPR014162 Cell division coordinator CpoB, C-terminal YPDSF_2570 IPR013026 Tetratricopeptide repeat-containing domain YPDSF_2570 IPR011990 Tetratricopeptide-like helical domain superfamily YPDSF_2570 IPR034706 Cell division coordinator CpoB YPDSF_2570 IPR019734 Tetratricopeptide repeat YPDSF_2570 IPR032519 YbgF, trimerisation domain YPDSF_2571 IPR006664 Outer membrane protein, bacterial YPDSF_2571 IPR039001 Peptidoglycan-associated lipoprotein YPDSF_2571 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal YPDSF_2571 IPR006690 Outer membrane protein, OmpA-like, conserved site YPDSF_2571 IPR006665 OmpA-like domain YPDSF_2571 IPR036737 OmpA-like domain superfamily YPDSF_2572 IPR011042 Six-bladed beta-propeller, TolB-like YPDSF_2572 IPR014167 Tol-Pal system protein TolB YPDSF_2572 IPR036752 TolB, N-terminal domain superfamily YPDSF_2572 IPR011659 WD40-like Beta Propeller YPDSF_2572 IPR007195 TolB, N-terminal YPDSF_2573 IPR014161 Tol-Pal system, TolA YPDSF_2573 IPR014161 Tol-Pal system, TolA YPDSF_2574 IPR003400 Biopolymer transport protein ExbD/TolR YPDSF_2574 IPR014168 Tol-Pal system protein TolR YPDSF_2575 IPR002898 MotA/TolQ/ExbB proton channel YPDSF_2575 IPR014163 Tol-Pal system, TolQ YPDSF_2576 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase YPDSF_2576 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family YPDSF_2576 IPR029069 HotDog domain superfamily YPDSF_2576 IPR006683 Thioesterase domain YPDSF_2576 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site YPDSF_2577 IPR011846 Cyd operon protein YbgE YPDSF_2578 IPR003317 Cytochrome ubiquinol oxidase subunit 2 YPDSF_2579 IPR002585 Cytochrome ubiquinol oxidase subunit 1 YPDSF_2580 IPR002686 Transposase IS200-like YPDSF_2580 IPR036515 Transposase IS200-like superfamily YPDSF_2581 IPR005810 Succinyl-CoA ligase, alpha subunit YPDSF_2581 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site YPDSF_2581 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site YPDSF_2581 IPR036291 NAD(P)-binding domain superfamily YPDSF_2581 IPR005811 ATP-citrate lyase/succinyl-CoA ligase YPDSF_2581 IPR003781 CoA-binding YPDSF_2581 IPR016102 Succinyl-CoA synthetase-like YPDSF_2582 IPR016102 Succinyl-CoA synthetase-like YPDSF_2582 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site YPDSF_2582 IPR005811 ATP-citrate lyase/succinyl-CoA ligase YPDSF_2582 IPR013815 ATP-grasp fold, subdomain 1 YPDSF_2582 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type YPDSF_2582 IPR011761 ATP-grasp fold YPDSF_2582 IPR005809 Succinate--CoA synthetase, beta subunit YPDSF_2583 IPR006255 Dihydrolipoamide succinyltransferase YPDSF_2583 IPR011053 Single hybrid motif YPDSF_2583 IPR004167 Peripheral subunit-binding domain YPDSF_2583 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site YPDSF_2583 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain YPDSF_2583 IPR000089 Biotin/lipoyl attachment YPDSF_2583 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YPDSF_2583 IPR036625 E3-binding domain superfamily YPDSF_2584 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal YPDSF_2584 IPR001017 Dehydrogenase, E1 component YPDSF_2584 IPR029061 Thiamin diphosphate-binding fold YPDSF_2584 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain YPDSF_2584 IPR011603 2-oxoglutarate dehydrogenase E1 component YPDSF_2584 IPR042179 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily YPDSF_2584 IPR005475 Transketolase-like, pyrimidine-binding domain YPDSF_2585 IPR036010 2Fe-2S ferredoxin-like superfamily YPDSF_2585 IPR009051 Alpha-helical ferredoxin YPDSF_2585 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal YPDSF_2585 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPDSF_2585 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPDSF_2585 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPDSF_2585 IPR012675 Beta-grasp domain superfamily YPDSF_2585 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein YPDSF_2586 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site YPDSF_2586 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_2586 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily YPDSF_2586 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal YPDSF_2586 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily YPDSF_2586 IPR011281 Succinate dehydrogenase, flavoprotein subunit YPDSF_2586 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit YPDSF_2586 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain YPDSF_2587 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit YPDSF_2587 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor YPDSF_2587 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit YPDSF_2588 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site YPDSF_2588 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit YPDSF_2588 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit YPDSF_2588 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit YPDSF_2589 IPR036969 Citrate synthase superfamily YPDSF_2589 IPR019810 Citrate synthase active site YPDSF_2589 IPR010953 Citrate synthase, type I YPDSF_2589 IPR002020 Citrate synthase YPDSF_2589 IPR016142 Citrate synthase-like, large alpha subdomain YPDSF_2589 IPR024176 Citrate synthase, bacterial-type YPDSF_2589 IPR016143 Citrate synthase-like, small alpha subdomain YPDSF_2590 IPR000740 GrpE nucleotide exchange factor YPDSF_2590 IPR013805 GrpE nucleotide exchange factor, coiled-coil YPDSF_2590 IPR009012 GrpE nucleotide exchange factor, head YPDSF_2591 IPR002504 NAD kinase YPDSF_2591 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily YPDSF_2591 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal YPDSF_2591 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal YPDSF_2592 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2592 IPR004604 DNA recombination/repair protein RecN YPDSF_2592 IPR003395 RecF/RecN/SMC, N-terminal YPDSF_2593 IPR007450 Lipoprotein SmpA/OmlA YPDSF_2593 IPR037873 BamE-like YPDSF_2593 IPR026592 Outer membrane protein assembly factor BamE YPDSF_2594 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp YPDSF_2594 IPR005346 RnfH protein YPDSF_2594 IPR037021 RnfH superfamily YPDSF_2595 IPR005031 Coenzyme Q-binding protein COQ10, START domain YPDSF_2595 IPR023393 START-like domain superfamily YPDSF_2596 IPR023620 Small protein B YPDSF_2596 IPR000037 SsrA-binding protein YPDSF_2596 IPR020081 SsrA-binding protein, conserved site YPDSF_2598 IPR038488 Integrase, DNA-binding domain superfamily YPDSF_2598 IPR025166 Integrase, DNA-binding domain YPDSF_2598 IPR010998 Integrase/recombinase, N-terminal YPDSF_2598 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPDSF_2598 IPR013762 Integrase-like, catalytic domain superfamily YPDSF_2598 IPR002104 Integrase, catalytic domain YPDSF_2607 IPR038724 Regulatory protein RepA YPDSF_2607 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2609 IPR014056 Addiction module killer protein, predicted YPDSF_2609 IPR009241 Toxin HigB-like YPDSF_2611 IPR036397 Ribonuclease H superfamily YPDSF_2611 IPR012337 Ribonuclease H-like superfamily YPDSF_2611 IPR006120 Resolvase, HTH domain YPDSF_2611 IPR001584 Integrase, catalytic core YPDSF_2611 IPR017894 HTH domain, IS21 transposase-type YPDSF_2612 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2612 IPR002611 IstB-like ATP-binding protein YPDSF_2612 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_2612 IPR001270 ClpA/B family YPDSF_2612 IPR003593 AAA+ ATPase domain YPDSF_2614 IPR002514 Transposase IS3/IS911family YPDSF_2614 IPR009057 Homeobox-like domain superfamily YPDSF_2616 IPR000073 Alpha/beta hydrolase fold-1 YPDSF_2616 IPR029058 Alpha/Beta hydrolase fold YPDSF_2617 IPR010985 Ribbon-helix-helix YPDSF_2617 IPR002145 Ribbon-helix-helix protein, CopG YPDSF_2619 IPR008254 Flavodoxin/nitric oxide synthase YPDSF_2619 IPR010086 Flavodoxin, long chain YPDSF_2619 IPR029039 Flavoprotein-like superfamily YPDSF_2619 IPR001226 Flavodoxin, conserved site YPDSF_2620 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_2620 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2620 IPR002481 Ferric-uptake regulator YPDSF_2621 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain YPDSF_2621 IPR013783 Immunoglobulin-like fold YPDSF_2621 IPR014756 Immunoglobulin E-set YPDSF_2621 IPR017853 Glycoside hydrolase superfamily YPDSF_2621 IPR025705 Beta-hexosaminidase YPDSF_2621 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily YPDSF_2621 IPR015883 Glycoside hydrolase family 20, catalytic domain YPDSF_2621 IPR004867 Chitobiase C-terminal domain YPDSF_2621 IPR029018 Beta-hexosaminidase-like, domain 2 YPDSF_2621 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal YPDSF_2621 IPR012291 CBM2, carbohydrate-binding domain superfamily YPDSF_2622 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal YPDSF_2622 IPR013783 Immunoglobulin-like fold YPDSF_2622 IPR029018 Beta-hexosaminidase-like, domain 2 YPDSF_2622 IPR017853 Glycoside hydrolase superfamily YPDSF_2622 IPR025705 Beta-hexosaminidase YPDSF_2622 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily YPDSF_2622 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain YPDSF_2622 IPR004867 Chitobiase C-terminal domain YPDSF_2622 IPR015883 Glycoside hydrolase family 20, catalytic domain YPDSF_2622 IPR014756 Immunoglobulin E-set YPDSF_2622 IPR012291 CBM2, carbohydrate-binding domain superfamily YPDSF_2623 IPR005318 Outer membrane porin, bacterial YPDSF_2623 IPR023614 Porin domain superfamily YPDSF_2624 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain YPDSF_2624 IPR022861 Glutamine-tRNA ligase, bacterial YPDSF_2624 IPR000924 Glutamyl/glutaminyl-tRNA synthetase YPDSF_2624 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_2624 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily YPDSF_2624 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain YPDSF_2624 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily YPDSF_2624 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPDSF_2624 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal YPDSF_2624 IPR004514 Glutamine-tRNA synthetase YPDSF_2625 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component YPDSF_2625 IPR036878 Glucose permease domain IIB YPDSF_2625 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site YPDSF_2625 IPR013013 Phosphotransferase system, EIIC component, type 1 YPDSF_2625 IPR001996 Phosphotransferase system, IIB component, type 1 YPDSF_2625 IPR011055 Duplicated hybrid motif YPDSF_2625 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 YPDSF_2625 IPR003352 Phosphotransferase system, EIIC YPDSF_2626 IPR037171 NagB/RpiA transferase-like YPDSF_2626 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase YPDSF_2626 IPR018321 Glucosamine-6-phosphate isomerase, conserved site YPDSF_2626 IPR004547 Glucosamine-6-phosphate isomerase YPDSF_2627 IPR032466 Metal-dependent hydrolase YPDSF_2627 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPDSF_2627 IPR006680 Amidohydrolase-related YPDSF_2627 IPR003764 N-acetylglucosamine-6-phosphate deacetylase YPDSF_2628 IPR000600 ROK family YPDSF_2628 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_2628 IPR000835 MarR-type HTH domain YPDSF_2628 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2629 IPR036412 HAD-like superfamily YPDSF_2629 IPR006357 HAD-superfamily hydrolase, subfamily IIA YPDSF_2629 IPR023214 HAD superfamily YPDSF_2630 IPR017932 Glutamine amidotransferase type 2 domain YPDSF_2630 IPR001962 Asparagine synthase YPDSF_2630 IPR029055 Nucleophile aminohydrolases, N-terminal YPDSF_2630 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_2630 IPR033738 Asparagine synthase, N-terminal domain YPDSF_2630 IPR006426 Asparagine synthase, glutamine-hydrolyzing YPDSF_2631 IPR002938 FAD-binding domain YPDSF_2631 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_2631 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 YPDSF_2631 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site YPDSF_2632 IPR006638 Elp3/MiaB/NifB YPDSF_2632 IPR005839 Methylthiotransferase YPDSF_2632 IPR020612 Methylthiotransferase, conserved site YPDSF_2632 IPR013848 Methylthiotransferase, N-terminal YPDSF_2632 IPR038135 Methylthiotransferase, N-terminal domain superfamily YPDSF_2632 IPR007197 Radical SAM YPDSF_2632 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB YPDSF_2632 IPR002792 TRAM domain YPDSF_2632 IPR023404 Radical SAM, alpha/beta horseshoe YPDSF_2633 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2633 IPR003714 PhoH-like protein YPDSF_2634 IPR020549 Endoribonuclease YbeY, conserved site YPDSF_2634 IPR002036 Endoribonuclease YbeY YPDSF_2634 IPR023091 Metalloprotease catalytic domain superfamily, predicted YPDSF_2636 IPR005170 Transporter-associated domain YPDSF_2636 IPR016169 FAD-binding, type PCMH, subdomain 2 YPDSF_2636 IPR000644 CBS domain YPDSF_2636 IPR036318 FAD-binding, type PCMH-like superfamily YPDSF_2637 IPR003010 Carbon-nitrogen hydrolase YPDSF_2637 IPR036526 Carbon-nitrogen hydrolase superfamily YPDSF_2637 IPR004563 Apolipoprotein N-acyltransferase YPDSF_2638 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPDSF_2639 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPDSF_2639 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_2639 IPR030202 Glutamate/aspartate transport system permease protein GltJ/AatQ YPDSF_2639 IPR035906 MetI-like superfamily YPDSF_2640 IPR035906 MetI-like superfamily YPDSF_2640 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_2640 IPR030205 Glutamate/aspartate transport system permease protein GltK/AatM YPDSF_2640 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPDSF_2641 IPR003439 ABC transporter-like YPDSF_2641 IPR003593 AAA+ ATPase domain YPDSF_2641 IPR017871 ABC transporter, conserved site YPDSF_2641 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2641 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type YPDSF_2642 IPR009912 Zinc-ribbon containing domain YPDSF_2643 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding YPDSF_2643 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_2643 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YPDSF_2643 IPR025709 Leucyl-tRNA synthetase, editing domain YPDSF_2643 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPDSF_2643 IPR002302 Leucine-tRNA ligase YPDSF_2643 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain YPDSF_2643 IPR002300 Aminoacyl-tRNA synthetase, class Ia YPDSF_2644 IPR007485 LPS-assembly lipoprotein LptE YPDSF_2645 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2645 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YPDSF_2645 IPR010372 DNA polymerase III delta, N-terminal YPDSF_2645 IPR032780 DNA polymerase III subunit delta, C-terminal YPDSF_2645 IPR005790 DNA polymerase III, delta subunit YPDSF_2646 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_2646 IPR004821 Cytidyltransferase-like domain YPDSF_2646 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase YPDSF_2647 IPR004394 Protein Iojap/ribosomal silencing factor RsfS YPDSF_2648 IPR003742 RNA methyltransferase RlmH YPDSF_2648 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPDSF_2648 IPR029028 Alpha/beta knot methyltransferases YPDSF_2649 IPR017790 Penicillin-binding protein 2 YPDSF_2649 IPR036138 Penicillin-binding protein, dimerisation domain superfamily YPDSF_2649 IPR005311 Penicillin-binding protein, dimerisation domain YPDSF_2649 IPR012338 Beta-lactamase/transpeptidase-like YPDSF_2649 IPR001460 Penicillin-binding protein, transpeptidase YPDSF_2650 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site YPDSF_2650 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA YPDSF_2650 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB YPDSF_2651 IPR034718 Endolytic peptidoglycan transglycosylase RlpA YPDSF_2651 IPR009009 RlpA-like protein, double-psi beta-barrel domain YPDSF_2651 IPR036908 RlpA-like domain superfamily YPDSF_2651 IPR012997 Rare lipoprotein A YPDSF_2651 IPR007730 Sporulation-like domain YPDSF_2651 IPR036680 Sporulation-like domain superfamily YPDSF_2652 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A YPDSF_2652 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal YPDSF_2652 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily YPDSF_2652 IPR015956 Penicillin-binding protein, C-terminal domain superfamily YPDSF_2652 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal YPDSF_2652 IPR012338 Beta-lactamase/transpeptidase-like YPDSF_2653 IPR027471 YbeD-like domain superfamily YPDSF_2653 IPR007454 Uncharacterised protein family UPF0250 YPDSF_2654 IPR020605 Octanoyltransferase, conserved site YPDSF_2654 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain YPDSF_2654 IPR000544 Octanoyltransferase YPDSF_2655 IPR007197 Radical SAM YPDSF_2655 IPR003698 Lipoyl synthase YPDSF_2655 IPR006638 Elp3/MiaB/NifB YPDSF_2655 IPR013785 Aldolase-type TIM barrel YPDSF_2655 IPR031691 Lipoyl synthase, N-terminal YPDSF_2656 IPR006312 Sec-independent protein translocase protein TatA/E YPDSF_2656 IPR024905 Sec-independent protein translocase protein TatE YPDSF_2656 IPR003369 Sec-independent protein translocase protein TatA/B/E YPDSF_2658 IPR003691 Putative fluoride ion transporter CrcB YPDSF_2659 IPR002059 Cold-shock protein, DNA-binding YPDSF_2659 IPR019844 Cold-shock (CSD) domain YPDSF_2659 IPR011129 Cold shock domain YPDSF_2659 IPR012156 Cold shock, CspA YPDSF_2659 IPR012340 Nucleic acid-binding, OB-fold YPDSF_2660 IPR012340 Nucleic acid-binding, OB-fold YPDSF_2660 IPR019844 Cold-shock (CSD) domain YPDSF_2660 IPR012156 Cold shock, CspA YPDSF_2660 IPR011129 Cold shock domain YPDSF_2660 IPR002059 Cold-shock protein, DNA-binding YPDSF_2661 IPR016032 Signal transduction response regulator, C-terminal effector YPDSF_2661 IPR000792 Transcription regulator LuxR, C-terminal YPDSF_2666 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2666 IPR017871 ABC transporter, conserved site YPDSF_2666 IPR011527 ABC transporter type 1, transmembrane domain YPDSF_2666 IPR003593 AAA+ ATPase domain YPDSF_2666 IPR039421 Type I protein exporter YPDSF_2666 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPDSF_2666 IPR003439 ABC transporter-like YPDSF_2667 IPR024203 5-deoxy-glucuronate isomerase, IolB YPDSF_2667 IPR023770 5-deoxy-glucuronate isomerase, Bacilli YPDSF_2667 IPR021120 KduI/IolB isomerase YPDSF_2667 IPR014710 RmlC-like jelly roll fold YPDSF_2667 IPR011051 RmlC-like cupin domain superfamily YPDSF_2668 IPR013022 Xylose isomerase-like, TIM barrel domain YPDSF_2668 IPR030823 IolE/MocC family YPDSF_2668 IPR036237 Xylose isomerase-like superfamily YPDSF_2669 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPDSF_2669 IPR022841 5-dehydro-2-deoxygluconokinase, Firmicutes YPDSF_2669 IPR011611 Carbohydrate kinase PfkB YPDSF_2669 IPR029056 Ribokinase-like YPDSF_2669 IPR023314 5-Dehydro-2-deoxygluconokinase-like superfamily YPDSF_2669 IPR030830 5-Dehydro-2-deoxygluconokinase YPDSF_2670 IPR036291 NAD(P)-binding domain superfamily YPDSF_2670 IPR000683 Oxidoreductase, N-terminal YPDSF_2670 IPR004104 Oxidoreductase, C-terminal YPDSF_2670 IPR030827 Inositol 2-dehydrogenase YPDSF_2671 IPR001851 ABC transporter, permease YPDSF_2672 IPR015861 ABC transporter, ribose import, RbsA YPDSF_2672 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2672 IPR003439 ABC transporter-like YPDSF_2672 IPR017871 ABC transporter, conserved site YPDSF_2672 IPR003593 AAA+ ATPase domain YPDSF_2673 IPR028082 Periplasmic binding protein-like I YPDSF_2673 IPR025997 Periplasmic binding protein YPDSF_2674 IPR004104 Oxidoreductase, C-terminal YPDSF_2674 IPR036291 NAD(P)-binding domain superfamily YPDSF_2674 IPR030827 Inositol 2-dehydrogenase YPDSF_2674 IPR000683 Oxidoreductase, N-terminal YPDSF_2675 IPR000683 Oxidoreductase, N-terminal YPDSF_2675 IPR004104 Oxidoreductase, C-terminal YPDSF_2675 IPR036291 NAD(P)-binding domain superfamily YPDSF_2675 IPR030827 Inositol 2-dehydrogenase YPDSF_2676 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPDSF_2676 IPR000399 TPP-binding enzyme, conserved site YPDSF_2676 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPDSF_2676 IPR023757 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase, Firmicutes YPDSF_2676 IPR030817 3,5/4-Trihydroxycyclohexa-1,2-dione hydrolase YPDSF_2676 IPR012000 Thiamine pyrophosphate enzyme, central domain YPDSF_2676 IPR029061 Thiamin diphosphate-binding fold YPDSF_2676 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPDSF_2677 IPR016160 Aldehyde dehydrogenase, cysteine active site YPDSF_2677 IPR015590 Aldehyde dehydrogenase domain YPDSF_2677 IPR016162 Aldehyde dehydrogenase, N-terminal YPDSF_2677 IPR016161 Aldehyde/histidinol dehydrogenase YPDSF_2677 IPR016163 Aldehyde dehydrogenase, C-terminal YPDSF_2677 IPR010061 Methylmalonate-semialdehyde dehydrogenase YPDSF_2679 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid YPDSF_2679 IPR002890 Macroglobulin domain YPDSF_2679 IPR001599 Alpha-2-macroglobulin YPDSF_2679 IPR041246 Bacterial alpha-2-macroglobulin MG10 domain YPDSF_2679 IPR041462 Bacterial Alpha-2-macroglobulin, MG6 domain YPDSF_2679 IPR021868 Alpha-2-macroglobulin MG3 domain YPDSF_2679 IPR011625 Alpha-2-macroglobulin, bait region domain YPDSF_2679 IPR041203 Bacterial Alpha-2-macroglobulin, MG5 domain YPDSF_2680 IPR011815 Penicillin-binding protein 1C YPDSF_2680 IPR012338 Beta-lactamase/transpeptidase-like YPDSF_2680 IPR001264 Glycosyl transferase, family 51 YPDSF_2680 IPR023346 Lysozyme-like domain superfamily YPDSF_2680 IPR009647 Penicillin-binding, C-terminal YPDSF_2680 IPR036950 Penicillin binding protein transglycosylase domain YPDSF_2680 IPR001460 Penicillin-binding protein, transpeptidase YPDSF_2681 IPR038722 Ner, winged helix-turn-helix DNA-binding domain YPDSF_2681 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPDSF_2684 IPR008514 Type VI secretion system effector, Hcp YPDSF_2684 IPR036624 Hcp1-like superfamily YPDSF_2686 IPR005546 Autotransporter beta-domain YPDSF_2686 IPR004899 Pertactin, central region YPDSF_2686 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPDSF_2686 IPR003991 Pertactin virulence factor family YPDSF_2686 IPR006315 Outer membrane autotransporter barrel YPDSF_2686 IPR036709 Autotransporter beta-domain superfamily YPDSF_2686 IPR024973 ESPR domain YPDSF_2686 IPR030930 Adhesin of bacterial autotransporter system YPDSF_2686 IPR011050 Pectin lyase fold/virulence factor YPDSF_2689 IPR001207 Transposase, mutator type YPDSF_2695 IPR023210 NADP-dependent oxidoreductase domain YPDSF_2695 IPR020471 Aldo/keto reductase YPDSF_2695 IPR036812 NADP-dependent oxidoreductase domain superfamily YPDSF_2695 IPR018170 Aldo/keto reductase, conserved site YPDSF_2696 IPR036812 NADP-dependent oxidoreductase domain superfamily YPDSF_2696 IPR023210 NADP-dependent oxidoreductase domain YPDSF_2696 IPR020471 Aldo/keto reductase YPDSF_2697 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_2697 IPR000847 Transcription regulator HTH, LysR YPDSF_2697 IPR005119 LysR, substrate-binding YPDSF_2697 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2698 IPR006120 Resolvase, HTH domain YPDSF_2698 IPR036397 Ribonuclease H superfamily YPDSF_2698 IPR012337 Ribonuclease H-like superfamily YPDSF_2698 IPR001584 Integrase, catalytic core YPDSF_2698 IPR017894 HTH domain, IS21 transposase-type YPDSF_2699 IPR003593 AAA+ ATPase domain YPDSF_2699 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2699 IPR001270 ClpA/B family YPDSF_2699 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_2699 IPR002611 IstB-like ATP-binding protein YPDSF_2701 IPR029021 Protein-tyrosine phosphatase-like YPDSF_2701 IPR000340 Dual specificity phosphatase, catalytic domain YPDSF_2701 IPR016130 Protein-tyrosine phosphatase, active site YPDSF_2701 IPR020422 Dual specificity protein phosphatase domain YPDSF_2701 IPR000387 Tyrosine specific protein phosphatases domain YPDSF_2701 IPR003595 Protein-tyrosine phosphatase, catalytic YPDSF_2702 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_2702 IPR022742 Serine aminopeptidase, S33 YPDSF_2702 IPR029058 Alpha/Beta hydrolase fold YPDSF_2702 IPR022744 Methyltransferase domain, putative YPDSF_2703 IPR002123 Phospholipid/glycerol acyltransferase YPDSF_2703 IPR016676 Phospholipid/glycerol acyltransferase, predicted YPDSF_2704 IPR000374 Phosphatidate cytidylyltransferase YPDSF_2705 IPR000462 CDP-alcohol phosphatidyltransferase YPDSF_2708 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YPDSF_2708 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site YPDSF_2708 IPR036291 NAD(P)-binding domain superfamily YPDSF_2708 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase YPDSF_2708 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YPDSF_2709 IPR036986 RNA-binding S4 domain superfamily YPDSF_2709 IPR002942 RNA-binding S4 domain YPDSF_2710 IPR036515 Transposase IS200-like superfamily YPDSF_2710 IPR002686 Transposase IS200-like YPDSF_2711 IPR032678 tRNA synthetases class I, catalytic domain YPDSF_2711 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YPDSF_2711 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR YPDSF_2711 IPR015803 Cysteine-tRNA ligase YPDSF_2711 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase YPDSF_2711 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_2712 IPR029000 Cyclophilin-like domain superfamily YPDSF_2712 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain YPDSF_2712 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site YPDSF_2712 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase YPDSF_2713 IPR010138 UDP-2,3-diacylglucosamine hydrolase YPDSF_2713 IPR029052 Metallo-dependent phosphatase-like YPDSF_2713 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPDSF_2714 IPR024694 PurE, prokaryotic type YPDSF_2714 IPR035893 PurE domain superfamily YPDSF_2714 IPR033747 Class I PurE YPDSF_2714 IPR000031 PurE domain YPDSF_2715 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit YPDSF_2715 IPR013815 ATP-grasp fold, subdomain 1 YPDSF_2715 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YPDSF_2715 IPR011054 Rudiment single hybrid motif YPDSF_2715 IPR040686 Phosphoribosylaminoimidazole carboxylase, C-terminal domain YPDSF_2715 IPR016185 Pre-ATP-grasp domain superfamily YPDSF_2715 IPR011761 ATP-grasp fold YPDSF_2716 IPR038766 Membrane component of ABC transporter, predicted YPDSF_2717 IPR003593 AAA+ ATPase domain YPDSF_2717 IPR003439 ABC transporter-like YPDSF_2717 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2717 IPR017871 ABC transporter, conserved site YPDSF_2718 IPR008265 Lipase, GDSL, active site YPDSF_2718 IPR013830 SGNH hydrolase-type esterase domain YPDSF_2718 IPR036514 SGNH hydrolase superfamily YPDSF_2719 IPR036291 NAD(P)-binding domain superfamily YPDSF_2719 IPR002347 Short-chain dehydrogenase/reductase SDR YPDSF_2719 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPDSF_2720 IPR036249 Thioredoxin-like superfamily YPDSF_2720 IPR013766 Thioredoxin domain YPDSF_2720 IPR011990 Tetratricopeptide-like helical domain superfamily YPDSF_2721 IPR032435 Band 7, C-terminal extension YPDSF_2721 IPR018080 Band 7/stomatin-like, conserved site YPDSF_2721 IPR001107 Band 7 domain YPDSF_2721 IPR036013 Band 7/SPFH domain superfamily YPDSF_2721 IPR001972 Stomatin family YPDSF_2722 IPR002810 NfeD-like, C-terminal domain YPDSF_2723 IPR009061 Putative DNA-binding domain superfamily YPDSF_2723 IPR000551 MerR-type HTH domain YPDSF_2723 IPR011789 Cu(I)-responsive transcriptional regulator YPDSF_2724 IPR023298 P-type ATPase, transmembrane domain superfamily YPDSF_2724 IPR036412 HAD-like superfamily YPDSF_2724 IPR023214 HAD superfamily YPDSF_2724 IPR001757 P-type ATPase YPDSF_2724 IPR027256 P-type ATPase, subfamily IB YPDSF_2724 IPR017969 Heavy-metal-associated, conserved site YPDSF_2724 IPR006121 Heavy metal-associated domain, HMA YPDSF_2724 IPR036163 Heavy metal-associated domain superfamily YPDSF_2724 IPR008250 P-type ATPase, A domain superfamily YPDSF_2724 IPR018303 P-type ATPase, phosphorylation site YPDSF_2724 IPR023299 P-type ATPase, cytoplasmic domain N YPDSF_2725 IPR002816 TraB family YPDSF_2726 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain YPDSF_2726 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC YPDSF_2726 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily YPDSF_2728 IPR036907 5'-Nucleotidase, C-terminal domain superfamily YPDSF_2728 IPR006146 5'-Nucleotidase, conserved site YPDSF_2728 IPR029052 Metallo-dependent phosphatase-like YPDSF_2728 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPDSF_2728 IPR008334 5'-Nucleotidase, C-terminal YPDSF_2728 IPR006179 5'-Nucleotidase/apyrase YPDSF_2729 IPR006146 5'-Nucleotidase, conserved site YPDSF_2729 IPR006179 5'-Nucleotidase/apyrase YPDSF_2729 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPDSF_2729 IPR029052 Metallo-dependent phosphatase-like YPDSF_2729 IPR008334 5'-Nucleotidase, C-terminal YPDSF_2729 IPR036907 5'-Nucleotidase, C-terminal domain superfamily YPDSF_2730 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPDSF_2730 IPR036907 5'-Nucleotidase, C-terminal domain superfamily YPDSF_2730 IPR006146 5'-Nucleotidase, conserved site YPDSF_2730 IPR006179 5'-Nucleotidase/apyrase YPDSF_2730 IPR008334 5'-Nucleotidase, C-terminal YPDSF_2730 IPR029052 Metallo-dependent phosphatase-like YPDSF_2733 IPR006153 Cation/H+ exchanger YPDSF_2733 IPR038770 Sodium/solute symporter superfamily YPDSF_2733 IPR036291 NAD(P)-binding domain superfamily YPDSF_2733 IPR003148 Regulator of K+ conductance, N-terminal YPDSF_2733 IPR004771 K+/H+ exchanger YPDSF_2734 IPR029056 Ribokinase-like YPDSF_2734 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPDSF_2734 IPR011611 Carbohydrate kinase PfkB YPDSF_2735 IPR003856 Polysaccharide chain length determinant N-terminal domain YPDSF_2736 IPR005841 Alpha-D-phosphohexomutase superfamily YPDSF_2736 IPR016066 Alpha-D-phosphohexomutase, conserved site YPDSF_2736 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily YPDSF_2736 IPR005843 Alpha-D-phosphohexomutase, C-terminal YPDSF_2736 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YPDSF_2736 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YPDSF_2736 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YPDSF_2736 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YPDSF_2737 IPR029044 Nucleotide-diphospho-sugar transferases YPDSF_2737 IPR001173 Glycosyltransferase 2-like YPDSF_2738 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal YPDSF_2738 IPR029044 Nucleotide-diphospho-sugar transferases YPDSF_2738 IPR014710 RmlC-like jelly roll fold YPDSF_2738 IPR011051 RmlC-like cupin domain superfamily YPDSF_2738 IPR005835 Nucleotidyl transferase domain YPDSF_2738 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YPDSF_2739 IPR028614 GDP-L-fucose synthase/GDP-L-colitose synthase YPDSF_2739 IPR001509 NAD-dependent epimerase/dehydratase YPDSF_2739 IPR036291 NAD(P)-binding domain superfamily YPDSF_2740 IPR016040 NAD(P)-binding domain YPDSF_2740 IPR036291 NAD(P)-binding domain superfamily YPDSF_2740 IPR006368 GDP-mannose 4,6-dehydratase YPDSF_2741 IPR016040 NAD(P)-binding domain YPDSF_2741 IPR006368 GDP-mannose 4,6-dehydratase YPDSF_2741 IPR036291 NAD(P)-binding domain superfamily YPDSF_2742 IPR001296 Glycosyl transferase, family 1 YPDSF_2742 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain YPDSF_2748 IPR036291 NAD(P)-binding domain superfamily YPDSF_2748 IPR001509 NAD-dependent epimerase/dehydratase YPDSF_2749 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_2749 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_2749 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_2749 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YPDSF_2750 IPR016040 NAD(P)-binding domain YPDSF_2750 IPR013445 CDP-glucose 4,6-dehydratase YPDSF_2750 IPR036291 NAD(P)-binding domain superfamily YPDSF_2751 IPR013446 Glucose-1-phosphate cytidylyltransferase YPDSF_2751 IPR005835 Nucleotidyl transferase domain YPDSF_2751 IPR029044 Nucleotide-diphospho-sugar transferases YPDSF_2752 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPDSF_2752 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPDSF_2752 IPR012675 Beta-grasp domain superfamily YPDSF_2752 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPDSF_2752 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPDSF_2752 IPR017938 Riboflavin synthase-like beta-barrel YPDSF_2752 IPR036010 2Fe-2S ferredoxin-like superfamily YPDSF_2752 IPR017927 FAD-binding domain, ferredoxin reductase-type YPDSF_2752 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPDSF_2753 IPR033659 Ferrochelatase, N-terminal YPDSF_2753 IPR033644 Ferrochelatase, C-terminal YPDSF_2753 IPR001015 Ferrochelatase YPDSF_2753 IPR019772 Ferrochelatase, active site YPDSF_2754 IPR033690 Adenylate kinase, conserved site YPDSF_2754 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2754 IPR006259 Adenylate kinase subfamily YPDSF_2754 IPR007862 Adenylate kinase, active site lid domain YPDSF_2754 IPR000850 Adenylate kinase/UMP-CMP kinase YPDSF_2755 IPR020575 Heat shock protein Hsp90, N-terminal YPDSF_2755 IPR001404 Heat shock protein Hsp90 family YPDSF_2755 IPR019805 Heat shock protein Hsp90, conserved site YPDSF_2755 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_2755 IPR020568 Ribosomal protein S5 domain 2-type fold YPDSF_2755 IPR003594 Histidine kinase/HSP90-like ATPase YPDSF_2755 IPR037196 HSP90, C-terminal domain YPDSF_2757 IPR015967 Recombination protein RecR, conserved site YPDSF_2757 IPR000093 DNA recombination protein RecR YPDSF_2757 IPR006171 TOPRIM domain YPDSF_2757 IPR034137 RecR, TOPRIM domain YPDSF_2757 IPR023627 Recombination protein RecR YPDSF_2757 IPR023628 Recombination protein RecR, C4-type zinc finger YPDSF_2758 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily YPDSF_2758 IPR004401 Nucleoid-associated protein YbaB/EbfC family YPDSF_2759 IPR022754 DNA polymerase III, gamma subunit, domain III YPDSF_2759 IPR012763 DNA polymerase III, subunit gamma/ tau YPDSF_2759 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YPDSF_2759 IPR021029 DNA polymerase III, tau subunit, domain V YPDSF_2759 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2759 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily YPDSF_2759 IPR003593 AAA+ ATPase domain YPDSF_2759 IPR001270 ClpA/B family YPDSF_2759 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV YPDSF_2760 IPR005764 Adenine phosphoribosyl transferase YPDSF_2760 IPR000836 Phosphoribosyltransferase domain YPDSF_2760 IPR029057 Phosphoribosyltransferase-like YPDSF_2761 IPR007401 Protein of unknown function DUF454 YPDSF_2763 IPR019630 Protein of unknown function DUF2496, YbaM-related YPDSF_2764 IPR023298 P-type ATPase, transmembrane domain superfamily YPDSF_2764 IPR010920 LSM domain superfamily YPDSF_2764 IPR011066 Mechanosensitive ion channel MscS, C-terminal YPDSF_2764 IPR023408 Mechanosensitive ion channel MscS domain superfamily YPDSF_2764 IPR006685 Mechanosensitive ion channel MscS YPDSF_2764 IPR006686 Mechanosensitive ion channel MscS, conserved site YPDSF_2764 IPR024393 Mechanosensitive ion channel MscS, porin domain YPDSF_2764 IPR025692 Mechanosensitive ion channel inner membrane domain 1 YPDSF_2764 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 YPDSF_2765 IPR027396 DsrEFH-like YPDSF_2765 IPR003787 Sulphur relay, DsrE/F-like protein YPDSF_2766 IPR001647 DNA-binding HTH domain, TetR-type YPDSF_2766 IPR013572 Transcription regulator MAATS, C-terminal YPDSF_2766 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPDSF_2766 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YPDSF_2766 IPR009057 Homeobox-like domain superfamily YPDSF_2767 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPDSF_2767 IPR006143 RND efflux pump, membrane fusion protein YPDSF_2768 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 YPDSF_2768 IPR001036 Acriflavin resistance protein YPDSF_2768 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPDSF_2769 IPR002150 Ribosomal protein L31 YPDSF_2769 IPR034704 L28p-like YPDSF_2769 IPR042105 Ribosomal protein L31 superfamily YPDSF_2769 IPR027493 Ribosomal protein L31 type B YPDSF_2770 IPR000473 Ribosomal protein L36 YPDSF_2770 IPR035977 Ribosomal protein L36 superfamily YPDSF_2772 IPR019693 Biofilm formation regulator YbaJ YPDSF_2773 IPR007985 Haemolysin expression modulating, HHA YPDSF_2773 IPR036666 HHA superfamily YPDSF_2774 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2774 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain YPDSF_2774 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YPDSF_2775 IPR039366 YscW/ExsB YPDSF_2776 IPR003703 Acyl-CoA thioesterase YPDSF_2776 IPR029069 HotDog domain superfamily YPDSF_2777 IPR029020 Ammonium/urea transporter YPDSF_2777 IPR018047 Ammonium transporter, conserved site YPDSF_2777 IPR001905 Ammonium transporter YPDSF_2777 IPR024041 Ammonium transporter AmtB-like domain YPDSF_2778 IPR002332 Nitrogen regulatory protein P-II, urydylation site YPDSF_2778 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPDSF_2778 IPR017918 Nitrogen regulatory protein PII, conserved site YPDSF_2778 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPDSF_2778 IPR002187 Nitrogen regulatory protein PII YPDSF_2779 IPR017871 ABC transporter, conserved site YPDSF_2779 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2779 IPR039421 Type I protein exporter YPDSF_2779 IPR003593 AAA+ ATPase domain YPDSF_2779 IPR003439 ABC transporter-like YPDSF_2779 IPR011527 ABC transporter type 1, transmembrane domain YPDSF_2779 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPDSF_2780 IPR039421 Type I protein exporter YPDSF_2780 IPR003593 AAA+ ATPase domain YPDSF_2780 IPR003439 ABC transporter-like YPDSF_2780 IPR017871 ABC transporter, conserved site YPDSF_2780 IPR011527 ABC transporter type 1, transmembrane domain YPDSF_2780 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPDSF_2780 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2781 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YPDSF_2781 IPR019885 Transcription regulator HTH, AsnC-type, conserved site YPDSF_2781 IPR019888 Transcription regulator AsnC-type YPDSF_2781 IPR011008 Dimeric alpha-beta barrel YPDSF_2781 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_2781 IPR000485 AsnC-type HTH domain YPDSF_2781 IPR011991 ArsR-like helix-turn-helix domain YPDSF_2781 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2782 IPR005856 Cysteine synthase YPDSF_2782 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site YPDSF_2782 IPR005859 Cysteine synthase CysK YPDSF_2782 IPR001926 Pyridoxal-phosphate dependent enzyme YPDSF_2782 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPDSF_2783 IPR006379 HAD-superfamily hydrolase, subfamily IIB YPDSF_2783 IPR036412 HAD-like superfamily YPDSF_2783 IPR000150 Cof family YPDSF_2783 IPR023214 HAD superfamily YPDSF_2783 IPR023938 HMP-PP phosphatase YPDSF_2784 IPR039424 Solute-binding protein family 5 YPDSF_2784 IPR000914 Solute-binding protein family 5 domain YPDSF_2784 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain YPDSF_2785 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_2785 IPR018317 Queuosine biosynthesis protein QueC YPDSF_2786 IPR029069 HotDog domain superfamily YPDSF_2786 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family YPDSF_2787 IPR004509 Competence protein ComEA, helix-hairpin-helix domain YPDSF_2787 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 YPDSF_2787 IPR010994 RuvA domain 2-like YPDSF_2788 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type YPDSF_2788 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site YPDSF_2788 IPR027304 Trigger factor/SurA domain superfamily YPDSF_2789 IPR036515 Transposase IS200-like superfamily YPDSF_2789 IPR002686 Transposase IS200-like YPDSF_2790 IPR000119 Histone-like DNA-binding protein YPDSF_2790 IPR020816 Histone-like DNA-binding protein, conserved site YPDSF_2790 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily YPDSF_2791 IPR020568 Ribosomal protein S5 domain 2-type fold YPDSF_2791 IPR004815 Lon protease, bacterial/eukaryotic-type YPDSF_2791 IPR003593 AAA+ ATPase domain YPDSF_2791 IPR008268 Peptidase S16, active site YPDSF_2791 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPDSF_2791 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2791 IPR003111 Lon, substrate-binding domain YPDSF_2791 IPR003959 ATPase, AAA-type, core YPDSF_2791 IPR027543 Lon protease, bacterial YPDSF_2791 IPR008269 Peptidase S16, Lon proteolytic domain YPDSF_2791 IPR027065 Lon protease YPDSF_2791 IPR015947 PUA-like superfamily YPDSF_2792 IPR003959 ATPase, AAA-type, core YPDSF_2792 IPR003593 AAA+ ATPase domain YPDSF_2792 IPR019489 Clp ATPase, C-terminal YPDSF_2792 IPR010603 Zinc finger, ClpX C4-type YPDSF_2792 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2792 IPR004487 Clp protease, ATP-binding subunit ClpX YPDSF_2792 IPR038366 Zinc finger, ClpX C4-type superfamily YPDSF_2793 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA YPDSF_2793 IPR029045 ClpP/crotonase-like domain superfamily YPDSF_2793 IPR001907 ATP-dependent Clp protease proteolytic subunit YPDSF_2793 IPR033135 ClpP, histidine active site YPDSF_2793 IPR018215 ClpP, Ser active site YPDSF_2794 IPR027304 Trigger factor/SurA domain superfamily YPDSF_2794 IPR005215 Trigger factor YPDSF_2794 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YPDSF_2794 IPR037041 Trigger factor, C-terminal domain superfamily YPDSF_2794 IPR008881 Trigger factor, ribosome-binding, bacterial YPDSF_2794 IPR036611 Trigger factor ribosome-binding domain superfamily YPDSF_2794 IPR008880 Trigger factor, C-terminal YPDSF_2795 IPR002634 BolA protein YPDSF_2795 IPR036065 BolA-like superfamily YPDSF_2796 IPR005619 Uncharacterised protein family, YajG YPDSF_2796 IPR012640 Membrane lipoprotein, lipid attachment site YPDSF_2797 IPR011701 Major facilitator superfamily YPDSF_2797 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 YPDSF_2797 IPR036259 MFS transporter superfamily YPDSF_2797 IPR020846 Major facilitator superfamily domain YPDSF_2798 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily YPDSF_2798 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like YPDSF_2799 IPR008972 Cupredoxin YPDSF_2799 IPR034227 Ubiquinol oxidase subunit 2, cupredoxin domain YPDSF_2799 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily YPDSF_2799 IPR006333 Cytochrome o ubiquinol oxidase subunit II YPDSF_2799 IPR010514 COX aromatic rich motif YPDSF_2799 IPR002429 Cytochrome c oxidase subunit II-like C-terminal YPDSF_2799 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain YPDSF_2800 IPR036927 Cytochrome c oxidase-like, subunit I superfamily YPDSF_2800 IPR014207 Cytochrome o ubiquinol oxidase, subunit I YPDSF_2800 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site YPDSF_2800 IPR023616 Cytochrome c oxidase-like, subunit I domain YPDSF_2800 IPR000883 Cytochrome c oxidase subunit I YPDSF_2801 IPR014206 Cytochrome o ubiquinol oxidase, subunit III YPDSF_2801 IPR033946 Ubiquinol oxidase subunit III domain YPDSF_2801 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle YPDSF_2801 IPR035973 Cytochrome c oxidase subunit III-like superfamily YPDSF_2801 IPR000298 Cytochrome c oxidase subunit III-like YPDSF_2801 IPR024791 Cytochrome c oxidase subunit III YPDSF_2802 IPR014210 Cytochrome o ubiquinol oxidase subunit IV YPDSF_2802 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes YPDSF_2803 IPR000537 UbiA prenyltransferase family YPDSF_2803 IPR006369 Protohaem IX farnesyltransferase YPDSF_2803 IPR030470 UbiA prenyltransferase conserved site YPDSF_2804 IPR011701 Major facilitator superfamily YPDSF_2804 IPR036259 MFS transporter superfamily YPDSF_2804 IPR020846 Major facilitator superfamily domain YPDSF_2805 IPR035571 UPF0234-like, C-terminal YPDSF_2805 IPR035570 UPF0234, N-terminal YPDSF_2805 IPR036183 YajQ-like superfamily YPDSF_2805 IPR007551 Protein of unknown function DUF520 YPDSF_2806 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPDSF_2806 IPR013752 Ketopantoate reductase, C-terminal domain YPDSF_2806 IPR003710 Ketopantoate reductase ApbA/PanE YPDSF_2806 IPR013332 Ketopantoate reductase, N-terminal domain YPDSF_2806 IPR036291 NAD(P)-binding domain superfamily YPDSF_2806 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPDSF_2807 IPR029062 Class I glutamine amidotransferase-like YPDSF_2807 IPR002818 DJ-1/PfpI YPDSF_2807 IPR006287 Protein/nucleic acid deglycase DJ-1 YPDSF_2808 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_2808 IPR036873 Rhodanese-like domain superfamily YPDSF_2808 IPR026340 Thiazole biosynthesis domain YPDSF_2808 IPR020536 Thil, AANH domain YPDSF_2808 IPR001763 Rhodanese-like domain YPDSF_2808 IPR003720 tRNA sulfurtransferase ThiI YPDSF_2808 IPR004114 THUMP domain YPDSF_2810 IPR037004 Exonuclease VII, small subunit superfamily YPDSF_2810 IPR003761 Exonuclease VII, small subunit YPDSF_2811 IPR008949 Isoprenoid synthase domain superfamily YPDSF_2811 IPR000092 Polyprenyl synthetase YPDSF_2811 IPR033749 Polyprenyl synthetase, conserved site YPDSF_2812 IPR020826 Transketolase binding site YPDSF_2812 IPR029061 Thiamin diphosphate-binding fold YPDSF_2812 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II YPDSF_2812 IPR005474 Transketolase, N-terminal YPDSF_2812 IPR005477 Deoxyxylulose-5-phosphate synthase YPDSF_2812 IPR005475 Transketolase-like, pyrimidine-binding domain YPDSF_2812 IPR033248 Transketolase, C-terminal domain YPDSF_2814 IPR007686 YutG/PgpA domain YPDSF_2814 IPR036681 PgpA-like superfamily YPDSF_2814 IPR026037 Phosphatidylglycerophosphatase A YPDSF_2815 IPR006283 Thiamine-monophosphate kinase YPDSF_2815 IPR010918 PurM-like, C-terminal domain YPDSF_2815 IPR016188 PurM-like, N-terminal domain YPDSF_2815 IPR036921 PurM-like, N-terminal domain superfamily YPDSF_2815 IPR036676 PurM-like, C-terminal domain superfamily YPDSF_2816 IPR035926 NusB-like superfamily YPDSF_2816 IPR011605 NusB antitermination factor YPDSF_2816 IPR006027 NusB/RsmB/TIM44 YPDSF_2817 IPR034964 Lumazine synthase YPDSF_2817 IPR002180 Lumazine/riboflavin synthase YPDSF_2817 IPR036467 Lumazine/riboflavin synthase superfamily YPDSF_2818 IPR016192 APOBEC/CMP deaminase, zinc-binding YPDSF_2818 IPR002125 Cytidine and deoxycytidylate deaminase domain YPDSF_2818 IPR016193 Cytidine deaminase-like YPDSF_2818 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal YPDSF_2818 IPR011549 Riboflavin-specific deaminase, C-terminal YPDSF_2818 IPR004794 Riboflavin biosynthesis protein RibD YPDSF_2818 IPR024072 Dihydrofolate reductase-like domain superfamily YPDSF_2819 IPR005144 ATP-cone domain YPDSF_2819 IPR003796 Ribonucleotide reductase regulator NrdR-like YPDSF_2823 IPR005665 Protein-export membrane protein SecF, bacterial YPDSF_2823 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site YPDSF_2823 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YPDSF_2823 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial YPDSF_2824 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site YPDSF_2824 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YPDSF_2824 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial YPDSF_2824 IPR027398 SecD export protein N-terminal TM domain YPDSF_2824 IPR005791 Protein translocase subunit SecD YPDSF_2825 IPR003849 Preprotein translocase YajC YPDSF_2826 IPR036511 Queuine tRNA-ribosyltransferase-like YPDSF_2826 IPR004803 tRNA-guanine transglycosylase YPDSF_2826 IPR002616 tRNA-guanine(15) transglycosylase-like YPDSF_2827 IPR042118 QueA, domain 1 YPDSF_2827 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA YPDSF_2827 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily YPDSF_2827 IPR042119 QueA, domain 2 YPDSF_2828 IPR023491 Acyl carrier protein phosphodiesterase, gammaproteobacteria YPDSF_2828 IPR007431 Acyl carrier protein phosphodiesterase YPDSF_2829 IPR036249 Thioredoxin-like superfamily YPDSF_2829 IPR013766 Thioredoxin domain YPDSF_2829 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant YPDSF_2829 IPR024706 Peroxiredoxin, AhpC-type YPDSF_2829 IPR019479 Peroxiredoxin, C-terminal YPDSF_2830 IPR029055 Nucleophile aminohydrolases, N-terminal YPDSF_2830 IPR000101 Gamma-glutamyltranspeptidase YPDSF_2831 IPR000101 Gamma-glutamyltranspeptidase YPDSF_2831 IPR029055 Nucleophile aminohydrolases, N-terminal YPDSF_2832 IPR036291 NAD(P)-binding domain superfamily YPDSF_2832 IPR002347 Short-chain dehydrogenase/reductase SDR YPDSF_2832 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPDSF_2832 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase YPDSF_2833 IPR017069 Maltodextrin glucosidase YPDSF_2833 IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain YPDSF_2833 IPR013780 Glycosyl hydrolase, all-beta YPDSF_2833 IPR017853 Glycoside hydrolase superfamily YPDSF_2833 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPDSF_2833 IPR014756 Immunoglobulin E-set YPDSF_2834 IPR004841 Amino acid permease/ SLC12A domain YPDSF_2834 IPR004840 Amino acid permease, conserved site YPDSF_2835 IPR004685 Branched-chain amino acid transport system II carrier protein YPDSF_2836 IPR024370 PBP domain YPDSF_2836 IPR011862 Phosphate binding protein YPDSF_2837 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_2837 IPR005467 Histidine kinase domain YPDSF_2837 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPDSF_2837 IPR021766 Phosphate regulon sensor protein PhoR YPDSF_2837 IPR013767 PAS fold YPDSF_2837 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPDSF_2837 IPR035965 PAS domain superfamily YPDSF_2837 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPDSF_2837 IPR003594 Histidine kinase/HSP90-like ATPase YPDSF_2837 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR YPDSF_2837 IPR000014 PAS domain YPDSF_2838 IPR001867 OmpR/PhoB-type DNA-binding domain YPDSF_2838 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2838 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB YPDSF_2838 IPR001789 Signal transduction response regulator, receiver domain YPDSF_2838 IPR011006 CheY-like superfamily YPDSF_2838 IPR039420 Transcriptional regulatory protein WalR-like YPDSF_2839 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPDSF_2839 IPR041796 Mre11 nuclease, N-terminal metallophosphatase domain YPDSF_2839 IPR004593 Nuclease SbcCD subunit D YPDSF_2839 IPR026843 Nuclease SbcCD subunit D, C-terminal domain YPDSF_2839 IPR029052 Metallo-dependent phosphatase-like YPDSF_2840 IPR004592 Nuclease SbcC, gammaproteobacteria type YPDSF_2840 IPR038729 Rad50/SbcC-type AAA domain YPDSF_2840 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2841 IPR000600 ROK family YPDSF_2842 IPR007476 Putative exonuclease, RdgC YPDSF_2843 IPR009664 Pyrimidine/purine nucleoside phosphorylase YPDSF_2843 IPR014710 RmlC-like jelly roll fold YPDSF_2843 IPR011051 RmlC-like cupin domain superfamily YPDSF_2844 IPR031322 Shikimate kinase/gluconokinase YPDSF_2844 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2844 IPR000623 Shikimate kinase/Threonine synthase-like 1 YPDSF_2844 IPR027544 Shikimate kinase 2 YPDSF_2844 IPR023000 Shikimate kinase, conserved site YPDSF_2846 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_2846 IPR013216 Methyltransferase type 11 YPDSF_2849 IPR012349 FMN-binding split barrel YPDSF_2849 IPR009875 PilZ domain YPDSF_2849 IPR023787 Type III secretion system flagellar brake protein YcgR YPDSF_2849 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal YPDSF_2850 IPR015590 Aldehyde dehydrogenase domain YPDSF_2850 IPR016161 Aldehyde/histidinol dehydrogenase YPDSF_2850 IPR016163 Aldehyde dehydrogenase, C-terminal YPDSF_2850 IPR016162 Aldehyde dehydrogenase, N-terminal YPDSF_2850 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site YPDSF_2850 IPR000965 GPR domain YPDSF_2850 IPR012134 Glutamate-5-semialdehyde dehydrogenase YPDSF_2851 IPR019797 Glutamate 5-kinase, conserved site YPDSF_2851 IPR011529 Glutamate 5-kinase YPDSF_2851 IPR036393 Acetylglutamate kinase-like superfamily YPDSF_2851 IPR002478 PUA domain YPDSF_2851 IPR001048 Aspartate/glutamate/uridylate kinase YPDSF_2851 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase YPDSF_2851 IPR041739 Glutamate-5-kinase domain YPDSF_2851 IPR015947 PUA-like superfamily YPDSF_2851 IPR001057 Glutamate/acetylglutamate kinase YPDSF_2851 IPR036974 PUA domain superfamily YPDSF_2852 IPR038208 Sigma factor-binding protein Crl superfamily YPDSF_2852 IPR009986 Sigma factor-binding transcriptional regulator Crl YPDSF_2854 IPR023747 Xanthine-guanine phosphoribosyltransferase YPDSF_2854 IPR000836 Phosphoribosyltransferase domain YPDSF_2854 IPR029057 Phosphoribosyltransferase-like YPDSF_2856 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2856 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_2856 IPR000847 Transcription regulator HTH, LysR YPDSF_2856 IPR005119 LysR, substrate-binding YPDSF_2857 IPR002933 Peptidase M20 YPDSF_2857 IPR011650 Peptidase M20, dimerisation domain YPDSF_2857 IPR001160 Peptidase M20C, Xaa-His dipeptidase YPDSF_2858 IPR036775 DNA polymerase, Y-family, little finger domain superfamily YPDSF_2858 IPR017961 DNA polymerase, Y-family, little finger domain YPDSF_2858 IPR022880 DNA polymerase IV YPDSF_2858 IPR024728 DNA polymerase type-Y, HhH motif YPDSF_2858 IPR001126 UmuC domain YPDSF_2859 IPR030395 Glycerophosphodiester phosphodiesterase domain YPDSF_2859 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily YPDSF_2861 IPR042159 Flavin-trafficking protein ApbE YPDSF_2861 IPR003374 ApbE-like superfamily YPDSF_2861 IPR024932 Flavin transferase ApbE YPDSF_2862 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F YPDSF_2862 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPDSF_2862 IPR036010 2Fe-2S ferredoxin-like superfamily YPDSF_2862 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPDSF_2862 IPR012675 Beta-grasp domain superfamily YPDSF_2862 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPDSF_2862 IPR017927 FAD-binding domain, ferredoxin reductase-type YPDSF_2862 IPR017938 Riboflavin synthase-like beta-barrel YPDSF_2862 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase YPDSF_2862 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPDSF_2863 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E YPDSF_2863 IPR003667 NqrDE/RnfAE YPDSF_2864 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D YPDSF_2864 IPR003667 NqrDE/RnfAE YPDSF_2865 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C YPDSF_2865 IPR007329 FMN-binding YPDSF_2866 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B YPDSF_2866 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD YPDSF_2867 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A YPDSF_2867 IPR022615 Na(+)-translocating NADH-quinone reductase subunit A, C-terminal domain YPDSF_2869 IPR005490 L,D-transpeptidase catalytic domain YPDSF_2869 IPR038063 L,D-transpeptidase catalytic domain-like YPDSF_2870 IPR029055 Nucleophile aminohydrolases, N-terminal YPDSF_2870 IPR026869 Putative glutamine amidotransferase type 2 YPDSF_2870 IPR017932 Glutamine amidotransferase type 2 domain YPDSF_2871 IPR001347 Sugar isomerase (SIS) YPDSF_2871 IPR035461 GmhA/DiaA YPDSF_2871 IPR004515 Phosphoheptose isomerase YPDSF_2872 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type YPDSF_2872 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily YPDSF_2872 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily YPDSF_2872 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal YPDSF_2872 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal YPDSF_2872 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal YPDSF_2875 IPR040542 HMW1 domain 2 YPDSF_2875 IPR041109 HMW1C N-terminal YPDSF_2876 IPR011050 Pectin lyase fold/virulence factor YPDSF_2876 IPR012334 Pectin lyase fold YPDSF_2876 IPR008638 Filamentous haemagglutinin, N-terminal YPDSF_2877 IPR005565 Haemolysin activator HlyB, C-terminal YPDSF_2877 IPR013686 Polypeptide-transport-associated, ShlB-type YPDSF_2877 IPR034746 POTRA domain YPDSF_2878 IPR011009 Protein kinase-like domain superfamily YPDSF_2878 IPR009212 Methylthioribose kinase YPDSF_2878 IPR002575 Aminoglycoside phosphotransferase YPDSF_2879 IPR000649 Initiation factor 2B-related YPDSF_2879 IPR037171 NagB/RpiA transferase-like YPDSF_2879 IPR027363 Methylthioribose-1-phosphate isomerase, N-terminal YPDSF_2879 IPR011559 Initiation factor 2B alpha/beta/delta YPDSF_2879 IPR005251 Methylthioribose-1-phosphate isomerase YPDSF_2880 IPR011051 RmlC-like cupin domain superfamily YPDSF_2880 IPR004313 Acireductone dioxygenase ARD family YPDSF_2880 IPR014710 RmlC-like jelly roll fold YPDSF_2880 IPR023956 Acireductone dioxygenase ARD, bacteria YPDSF_2881 IPR023943 Enolase-phosphatase E1 YPDSF_2881 IPR023214 HAD superfamily YPDSF_2881 IPR006439 HAD hydrolase, subfamily IA YPDSF_2881 IPR036412 HAD-like superfamily YPDSF_2882 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPDSF_2882 IPR001303 Class II aldolase/adducin N-terminal YPDSF_2882 IPR017714 Methylthioribulose-1-phosphate dehydratase YPDSF_2883 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_2883 IPR004839 Aminotransferase, class I/classII YPDSF_2883 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_2883 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_2884 IPR003010 Carbon-nitrogen hydrolase YPDSF_2884 IPR036526 Carbon-nitrogen hydrolase superfamily YPDSF_2884 IPR001110 Uncharacterised protein family UPF0012, conserved site YPDSF_2885 IPR002933 Peptidase M20 YPDSF_2885 IPR010158 Amidase, carbamoylase-type YPDSF_2885 IPR036264 Bacterial exopeptidase dimerisation domain YPDSF_2885 IPR011650 Peptidase M20, dimerisation domain YPDSF_2886 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase YPDSF_2886 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_2886 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_2886 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_2886 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPDSF_2886 IPR000192 Aminotransferase class V domain YPDSF_2887 IPR001584 Integrase, catalytic core YPDSF_2887 IPR006120 Resolvase, HTH domain YPDSF_2887 IPR012337 Ribonuclease H-like superfamily YPDSF_2887 IPR017894 HTH domain, IS21 transposase-type YPDSF_2887 IPR036397 Ribonuclease H superfamily YPDSF_2888 IPR003593 AAA+ ATPase domain YPDSF_2888 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2888 IPR002611 IstB-like ATP-binding protein YPDSF_2888 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_2888 IPR001270 ClpA/B family YPDSF_2889 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_2889 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_2889 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPDSF_2889 IPR000192 Aminotransferase class V domain YPDSF_2889 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_2889 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase YPDSF_2890 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type YPDSF_2890 IPR003593 AAA+ ATPase domain YPDSF_2890 IPR017871 ABC transporter, conserved site YPDSF_2890 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2890 IPR003439 ABC transporter-like YPDSF_2892 IPR035906 MetI-like superfamily YPDSF_2892 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPDSF_2892 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_2893 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPDSF_2893 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YPDSF_2893 IPR001320 Ionotropic glutamate receptor YPDSF_2893 IPR018313 Solute-binding protein family 3, conserved site YPDSF_2897 IPR036928 Amidase signature (AS) superfamily YPDSF_2897 IPR014087 1-carboxybiuret hydrolase, AtzE subunit YPDSF_2897 IPR023631 Amidase signature domain YPDSF_2897 IPR000120 Amidase YPDSF_2899 IPR020846 Major facilitator superfamily domain YPDSF_2899 IPR011701 Major facilitator superfamily YPDSF_2899 IPR036259 MFS transporter superfamily YPDSF_2900 IPR011606 Branched-chain amino acid transport, permease YPDSF_2901 IPR008407 Branched-chain amino acid transport, AzlD YPDSF_2902 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_2902 IPR023187 Transcriptional regulator MarR-type, conserved site YPDSF_2902 IPR000835 MarR-type HTH domain YPDSF_2902 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2903 IPR005694 Efflux pump membrane protein YPDSF_2903 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPDSF_2904 IPR036259 MFS transporter superfamily YPDSF_2904 IPR004638 Drug resistance transporter EmrB-like YPDSF_2904 IPR011701 Major facilitator superfamily YPDSF_2904 IPR020846 Major facilitator superfamily domain YPDSF_2905 IPR029028 Alpha/beta knot methyltransferases YPDSF_2905 IPR029064 50S ribosomal protein L30e-like YPDSF_2905 IPR013123 RNA 2-O ribose methyltransferase, substrate binding YPDSF_2905 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPDSF_2905 IPR016479 tRNA/rRNA methyltransferase, YfiF, predicted YPDSF_2905 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPDSF_2905 IPR004441 RNA methyltransferase TrmH family YPDSF_2906 IPR005746 Thioredoxin YPDSF_2906 IPR036249 Thioredoxin-like superfamily YPDSF_2906 IPR017937 Thioredoxin, conserved site YPDSF_2906 IPR013766 Thioredoxin domain YPDSF_2908 IPR016102 Succinyl-CoA synthetase-like YPDSF_2908 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain YPDSF_2908 IPR036291 NAD(P)-binding domain superfamily YPDSF_2908 IPR000182 GNAT domain YPDSF_2908 IPR003781 CoA-binding YPDSF_2908 IPR013815 ATP-grasp fold, subdomain 1 YPDSF_2908 IPR011761 ATP-grasp fold YPDSF_2908 IPR016181 Acyl-CoA N-acyltransferase YPDSF_2909 IPR001736 Phospholipase D/Transphosphatidylase YPDSF_2909 IPR025202 Phospholipase D-like domain YPDSF_2909 IPR016270 CDP-alcohol phosphatidyltransferase class-II family YPDSF_2910 IPR017028 Uncharacterised conserved protein UCP034456 YPDSF_2910 IPR018736 Protein of unknown function DUF2279, periplasmic lipoprotein YPDSF_2911 IPR003593 AAA+ ATPase domain YPDSF_2911 IPR003959 ATPase, AAA-type, core YPDSF_2911 IPR036628 Clp, N-terminal domain superfamily YPDSF_2911 IPR019489 Clp ATPase, C-terminal YPDSF_2911 IPR004176 Clp, N-terminal YPDSF_2911 IPR017730 Chaperonin ClpB YPDSF_2911 IPR028299 ClpA/B, conserved site 2 YPDSF_2911 IPR018368 ClpA/B, conserved site 1 YPDSF_2911 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2911 IPR001270 ClpA/B family YPDSF_2911 IPR041546 ClpA/ClpB, AAA lid domain YPDSF_2913 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPDSF_2913 IPR036986 RNA-binding S4 domain superfamily YPDSF_2913 IPR002942 RNA-binding S4 domain YPDSF_2913 IPR006145 Pseudouridine synthase, RsuA/RluA YPDSF_2913 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YPDSF_2913 IPR006225 Pseudouridine synthase, RluC/RluD YPDSF_2914 IPR011990 Tetratricopeptide-like helical domain superfamily YPDSF_2914 IPR039565 Outer membrane lipoprotein BamD-like YPDSF_2914 IPR017689 Outer membrane protein assembly factor BamD YPDSF_2915 IPR036567 Ribosome hibernation promotion factor-like YPDSF_2915 IPR003489 Ribosome hibernation promoting factor/RaiA YPDSF_2917 IPR018528 Prephenate dehydratase, conserved site YPDSF_2917 IPR001086 Prephenate dehydratase YPDSF_2917 IPR002701 Chorismate mutase II, prokaryotic-type YPDSF_2917 IPR036979 Chorismate mutase domain superfamily YPDSF_2917 IPR036263 Chorismate mutase type II superfamily YPDSF_2917 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase YPDSF_2917 IPR002912 ACT domain YPDSF_2917 IPR010952 Chorismate mutase, gammaproteobacteria YPDSF_2918 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPDSF_2918 IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein YPDSF_2918 IPR036263 Chorismate mutase type II superfamily YPDSF_2918 IPR036979 Chorismate mutase domain superfamily YPDSF_2918 IPR011277 Chorismate mutase, T-protein YPDSF_2918 IPR036291 NAD(P)-binding domain superfamily YPDSF_2918 IPR003099 Prephenate dehydrogenase YPDSF_2918 IPR002701 Chorismate mutase II, prokaryotic-type YPDSF_2919 IPR013785 Aldolase-type TIM barrel YPDSF_2919 IPR006218 DAHP synthetase I/KDSA YPDSF_2919 IPR006219 DHAP synthase, class 1 YPDSF_2920 IPR002611 IstB-like ATP-binding protein YPDSF_2920 IPR003593 AAA+ ATPase domain YPDSF_2920 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2920 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_2920 IPR001270 ClpA/B family YPDSF_2921 IPR036397 Ribonuclease H superfamily YPDSF_2921 IPR006120 Resolvase, HTH domain YPDSF_2921 IPR001584 Integrase, catalytic core YPDSF_2921 IPR017894 HTH domain, IS21 transposase-type YPDSF_2921 IPR012337 Ribonuclease H-like superfamily YPDSF_2923 IPR005584 DNA gyrase inhibitor YacG YPDSF_2923 IPR013088 Zinc finger, NHR/GATA-type YPDSF_2924 IPR009777 Cell division protein ZapD YPDSF_2924 IPR027462 Z ring-associated protein D, C-terminal YPDSF_2924 IPR036268 ZapD domain superfamily YPDSF_2925 IPR001977 Dephospho-CoA kinase YPDSF_2925 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2926 IPR013785 Aldolase-type TIM barrel YPDSF_2926 IPR005993 GMP reductase YPDSF_2926 IPR015875 IMP dehydrogenase / GMP reductase, conserved site YPDSF_2926 IPR001093 IMP dehydrogenase/GMP reductase YPDSF_2927 IPR003004 GspF/PilC family YPDSF_2927 IPR001992 Type II secretion system conserved site YPDSF_2927 IPR018076 Type II secretion system F domain YPDSF_2927 IPR042094 Type II secretion system F domain superfamily YPDSF_2928 IPR007831 General secretory system II, protein E, N-terminal YPDSF_2928 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2928 IPR001482 Type II/IV secretion system protein YPDSF_2929 IPR012902 Prokaryotic N-terminal methylation site YPDSF_2930 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal YPDSF_2930 IPR013785 Aldolase-type TIM barrel YPDSF_2930 IPR004393 Nicotinate-nucleotide pyrophosphorylase YPDSF_2930 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD YPDSF_2930 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal YPDSF_2930 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily YPDSF_2930 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal YPDSF_2931 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily YPDSF_2931 IPR002502 N-acetylmuramoyl-L-alanine amidase domain YPDSF_2932 IPR031347 Protein AmpE YPDSF_2933 IPR004840 Amino acid permease, conserved site YPDSF_2933 IPR004841 Amino acid permease/ SLC12A domain YPDSF_2934 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_2934 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_2934 IPR000524 Transcription regulator HTH, GntR YPDSF_2934 IPR008920 Transcription regulator FadR/GntR, C-terminal YPDSF_2934 IPR011711 GntR, C-terminal YPDSF_2935 IPR035807 Pyruvate dehydrogenase E1 component, N-terminal YPDSF_2935 IPR004660 Pyruvate dehydrogenase E1 component YPDSF_2935 IPR041621 Pyruvate dehydrogenase E1 component, middle domain YPDSF_2935 IPR029061 Thiamin diphosphate-binding fold YPDSF_2935 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II YPDSF_2935 IPR005474 Transketolase, N-terminal YPDSF_2936 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain YPDSF_2936 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex YPDSF_2936 IPR011053 Single hybrid motif YPDSF_2936 IPR004167 Peripheral subunit-binding domain YPDSF_2936 IPR036625 E3-binding domain superfamily YPDSF_2936 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily YPDSF_2936 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site YPDSF_2936 IPR000089 Biotin/lipoyl attachment YPDSF_2938 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site YPDSF_2938 IPR023753 FAD/NAD(P)-binding domain YPDSF_2938 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPDSF_2938 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I YPDSF_2938 IPR006258 Dihydrolipoamide dehydrogenase YPDSF_2938 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily YPDSF_2938 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_2939 IPR002686 Transposase IS200-like YPDSF_2939 IPR036515 Transposase IS200-like superfamily YPDSF_2940 IPR036288 Aconitase B, HEAT-like domain superfamily YPDSF_2940 IPR015933 Aconitase B, HEAT-like domain YPDSF_2940 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 YPDSF_2940 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain YPDSF_2940 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel YPDSF_2940 IPR015932 Aconitase, domain 2 YPDSF_2940 IPR004406 Aconitase B YPDSF_2940 IPR015929 Aconitase B, swivel YPDSF_2940 IPR036008 Aconitase, iron-sulfur domain YPDSF_2940 IPR018136 Aconitase family, 4Fe-4S cluster binding site YPDSF_2941 IPR008249 Uncharacterised protein family UPF0231 YPDSF_2942 IPR000620 EamA domain YPDSF_2943 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic YPDSF_2943 IPR009165 S-adenosylmethionine decarboxylase, bacterial YPDSF_2943 IPR016067 S-adenosylmethionine decarboxylase, core YPDSF_2944 IPR035246 Spermidine synthase, tetramerisation domain YPDSF_2944 IPR037163 Spermidine synthase, tetramerisation domain superfamily YPDSF_2944 IPR030373 Polyamine biosynthesis domain, conserved site YPDSF_2944 IPR030374 Polyamine biosynthesis domain YPDSF_2944 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_2944 IPR001045 Spermidine/spermine synthases YPDSF_2945 IPR038432 PulS/OutS-like superfamily YPDSF_2945 IPR019114 Chaperone lipoprotein, PulS/OutS-like YPDSF_2946 IPR001117 Multicopper oxidase, type 1 YPDSF_2946 IPR011706 Multicopper oxidase, type 2 YPDSF_2946 IPR011707 Multicopper oxidase, type 3 YPDSF_2946 IPR008972 Cupredoxin YPDSF_2946 IPR002355 Multicopper oxidase, copper-binding site YPDSF_2946 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YPDSF_2946 IPR006311 Twin-arginine translocation pathway, signal sequence YPDSF_2947 IPR005904 Hypoxanthine phosphoribosyl transferase YPDSF_2947 IPR000836 Phosphoribosyltransferase domain YPDSF_2947 IPR029057 Phosphoribosyltransferase-like YPDSF_2948 IPR001765 Carbonic anhydrase YPDSF_2948 IPR036874 Carbonic anhydrase superfamily YPDSF_2948 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site YPDSF_2949 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2949 IPR017871 ABC transporter, conserved site YPDSF_2949 IPR003439 ABC transporter-like YPDSF_2949 IPR003593 AAA+ ATPase domain YPDSF_2950 IPR013525 ABC-2 type transporter YPDSF_2950 IPR000412 ABC-2 transporter YPDSF_2952 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPDSF_2952 IPR002509 NodB homology domain YPDSF_2953 IPR003190 Aspartate decarboxylase YPDSF_2953 IPR009010 Aspartate decarboxylase-like domain superfamily YPDSF_2954 IPR042176 Pantoate-beta-alanine ligase, C-terminal domain YPDSF_2954 IPR003721 Pantoate-beta-alanine ligase YPDSF_2954 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_2955 IPR003700 Ketopantoate hydroxymethyltransferase YPDSF_2955 IPR040442 Pyruvate kinase-like domain superfamily YPDSF_2955 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPDSF_2956 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YPDSF_2956 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily YPDSF_2957 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain YPDSF_2957 IPR002646 Poly A polymerase, head domain YPDSF_2957 IPR025866 Polymerase A arginine-rich C-terminal domain YPDSF_2957 IPR010206 Poly(A) polymerase I YPDSF_2958 IPR022380 Glutamyl-Q tRNA(Asp) synthetase YPDSF_2958 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain YPDSF_2958 IPR000924 Glutamyl/glutaminyl-tRNA synthetase YPDSF_2958 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_2959 IPR020458 Zinc finger, DksA/TraR C4-type conserved site YPDSF_2959 IPR037187 DksA, N-terminal domain superfamily YPDSF_2959 IPR000962 Zinc finger, DksA/TraR C4-type YPDSF_2959 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria YPDSF_2959 IPR012784 RNA polymerase-binding transcription factor DksA YPDSF_2960 IPR041465 SfsA, N-terminal OB domain YPDSF_2960 IPR005224 Sugar fermentation stimulation protein YPDSF_2960 IPR040452 Sugar fermentation stimulation protein, C-terminal YPDSF_2961 IPR014051 Phosphoesterase, HXTX YPDSF_2961 IPR004175 RNA 2',3'-cyclic phosphodiesterase YPDSF_2961 IPR009097 Cyclic phosphodiesterase YPDSF_2962 IPR011545 DEAD/DEAH box helicase domain YPDSF_2962 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2962 IPR010225 ATP-dependent helicase HrpB YPDSF_2962 IPR007502 Helicase-associated domain YPDSF_2962 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal YPDSF_2962 IPR001650 Helicase, C-terminal YPDSF_2962 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPDSF_2963 IPR028166 Bifunctional transglycosylase second domain YPDSF_2963 IPR036950 Penicillin binding protein transglycosylase domain YPDSF_2963 IPR001460 Penicillin-binding protein, transpeptidase YPDSF_2963 IPR023346 Lysozyme-like domain superfamily YPDSF_2963 IPR032730 Transglycosylase PBP1b, N-terminal transmembrane domain YPDSF_2963 IPR011813 Penicillin-binding protein 1B YPDSF_2963 IPR012338 Beta-lactamase/transpeptidase-like YPDSF_2963 IPR001264 Glycosyl transferase, family 51 YPDSF_2966 IPR002491 ABC transporter periplasmic binding domain YPDSF_2967 IPR000522 ABC transporter, permease protein, BtuC-like YPDSF_2967 IPR037294 ABC transporter, BtuC-like YPDSF_2968 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase YPDSF_2968 IPR005814 Aminotransferase class-III YPDSF_2968 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_2968 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_2968 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_2969 IPR014743 Chloride channel, core YPDSF_2969 IPR023861 Chloride channel, ClcA YPDSF_2969 IPR001807 Chloride channel, voltage gated YPDSF_2970 IPR023063 FeS cluster insertion protein ErpA YPDSF_2970 IPR016092 FeS cluster insertion protein YPDSF_2970 IPR000361 FeS cluster biogenesis YPDSF_2970 IPR035903 HesB-like domain superfamily YPDSF_2970 IPR017870 FeS cluster insertion, C-terminal, conserved site YPDSF_2972 IPR005115 Uncharacterised domain UPF0126 YPDSF_2973 IPR002491 ABC transporter periplasmic binding domain YPDSF_2973 IPR023544 ABC transporter, vitamin B12-binding protein YPDSF_2974 IPR010049 MTA/SAH nucleosidase YPDSF_2974 IPR000845 Nucleoside phosphorylase domain YPDSF_2974 IPR035994 Nucleoside phosphorylase superfamily YPDSF_2975 IPR020779 dNTP triphosphohydrolase, type 1 YPDSF_2975 IPR006261 dNTP triphosphohydrolase YPDSF_2975 IPR006674 HD domain YPDSF_2975 IPR026875 Phosphohydrolase-associated domain YPDSF_2975 IPR003607 HD/PDEase domain YPDSF_2975 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain superfamily YPDSF_2976 IPR009003 Peptidase S1, PA clan YPDSF_2976 IPR001940 Peptidase S1C YPDSF_2976 IPR001478 PDZ domain YPDSF_2976 IPR036034 PDZ superfamily YPDSF_2976 IPR011782 Peptidase S1C, Do YPDSF_2977 IPR003660 HAMP domain YPDSF_2977 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPDSF_2977 IPR011006 CheY-like superfamily YPDSF_2977 IPR001789 Signal transduction response regulator, receiver domain YPDSF_2977 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPDSF_2977 IPR019247 Histidine kinase BarA, N-terminal YPDSF_2977 IPR005467 Histidine kinase domain YPDSF_2977 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPDSF_2977 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_2977 IPR036641 HPT domain superfamily YPDSF_2977 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPDSF_2977 IPR003594 Histidine kinase/HSP90-like ATPase YPDSF_2979 IPR010280 (Uracil-5)-methyltransferase family YPDSF_2979 IPR030390 RNA methyltransferase TrmA, active site YPDSF_2979 IPR030391 RNA methyltransferase TrmA, conserved site YPDSF_2979 IPR012340 Nucleic acid-binding, OB-fold YPDSF_2979 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_2979 IPR002792 TRAM domain YPDSF_2979 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD YPDSF_2980 IPR012676 TGS-like YPDSF_2980 IPR033655 RelA, TGS domain YPDSF_2980 IPR003607 HD/PDEase domain YPDSF_2980 IPR004095 TGS YPDSF_2980 IPR007685 RelA/SpoT YPDSF_2980 IPR004811 RelA/SpoT family YPDSF_2980 IPR012675 Beta-grasp domain superfamily YPDSF_2980 IPR002912 ACT domain YPDSF_2981 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core YPDSF_2981 IPR011551 NTP pyrophosphohydrolase MazG YPDSF_2982 IPR004468 CTP synthase YPDSF_2982 IPR029062 Class I glutamine amidotransferase-like YPDSF_2982 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2982 IPR033828 CTP synthase GATase domain YPDSF_2982 IPR017926 Glutamine amidotransferase YPDSF_2982 IPR017456 CTP synthase, N-terminal YPDSF_2983 IPR029017 Enolase-like, N-terminal YPDSF_2983 IPR000941 Enolase YPDSF_2983 IPR020810 Enolase, C-terminal TIM barrel domain YPDSF_2983 IPR036849 Enolase-like, C-terminal domain superfamily YPDSF_2983 IPR020811 Enolase, N-terminal YPDSF_2983 IPR020809 Enolase, conserved site YPDSF_2984 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily YPDSF_2984 IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone YPDSF_2984 IPR001424 Superoxide dismutase, copper/zinc binding domain YPDSF_2984 IPR018152 Superoxide dismutase, copper/zinc, binding site YPDSF_2985 IPR013785 Aldolase-type TIM barrel YPDSF_2985 IPR027609 Putative 7-carboxy-7-deazaguanine synthase QueE, Proteobacteria YPDSF_2985 IPR024924 7-carboxy-7-deazaguanine synthase-like YPDSF_2985 IPR007197 Radical SAM YPDSF_2986 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family YPDSF_2986 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily YPDSF_2987 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding YPDSF_2987 IPR029039 Flavoprotein-like superfamily YPDSF_2987 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase YPDSF_2987 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPDSF_2987 IPR008254 Flavodoxin/nitric oxide synthase YPDSF_2987 IPR001094 Flavodoxin-like YPDSF_2987 IPR017927 FAD-binding domain, ferredoxin reductase-type YPDSF_2987 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily YPDSF_2987 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria YPDSF_2987 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPDSF_2987 IPR017938 Riboflavin synthase-like beta-barrel YPDSF_2987 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain YPDSF_2988 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit YPDSF_2988 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site YPDSF_2988 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain YPDSF_2988 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily YPDSF_2988 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain YPDSF_2989 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_2989 IPR011800 Phosphoadenosine phosphosulphate reductase CysH YPDSF_2989 IPR002500 Phosphoadenosine phosphosulphate reductase YPDSF_2989 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase YPDSF_2990 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase YPDSF_2990 IPR011800 Phosphoadenosine phosphosulphate reductase CysH YPDSF_2990 IPR002500 Phosphoadenosine phosphosulphate reductase YPDSF_2990 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_2993 IPR012409 Sirohaem synthase YPDSF_2993 IPR014776 Tetrapyrrole methylase, subdomain 2 YPDSF_2993 IPR019478 Sirohaem synthase, dimerisation domain YPDSF_2993 IPR014777 Tetrapyrrole methylase, subdomain 1 YPDSF_2993 IPR035996 Tetrapyrrole methylase superfamily YPDSF_2993 IPR036291 NAD(P)-binding domain superfamily YPDSF_2993 IPR006366 Uroporphyrin-III C-methyltransferase YPDSF_2993 IPR028281 Siroheme synthase, central domain YPDSF_2993 IPR037115 Sirohaem synthase, dimerisation domain superfamily YPDSF_2993 IPR000878 Tetrapyrrole methylase YPDSF_2993 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site YPDSF_2993 IPR006367 Sirohaem synthase, N-terminal YPDSF_2994 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_2994 IPR002500 Phosphoadenosine phosphosulphate reductase YPDSF_2994 IPR011784 Sulphate adenylyltransferase, small subunit YPDSF_2995 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2995 IPR005225 Small GTP-binding protein domain YPDSF_2995 IPR000795 Transcription factor, GTP-binding domain YPDSF_2995 IPR009000 Translation protein, beta-barrel domain superfamily YPDSF_2995 IPR041757 Sulfate adenylyltransferase subunit CysN, GTP-binding domain YPDSF_2995 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPDSF_2995 IPR011779 Sulphate adenylyltransferase, large subunit YPDSF_2995 IPR031157 Tr-type G domain, conserved site YPDSF_2996 IPR002891 Adenylyl-sulfate kinase YPDSF_2996 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_2997 IPR022721 Protein of unknown function DUF3561 YPDSF_2998 IPR007060 Septum formation initiator FtsL/DivIC YPDSF_2998 IPR023081 Cell division protein FtsB YPDSF_2999 IPR034683 Cytidylyltransferase IspD/TarI YPDSF_2999 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site YPDSF_2999 IPR029044 Nucleotide-diphospho-sugar transferases YPDSF_2999 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YPDSF_3000 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site YPDSF_3000 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily YPDSF_3000 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YPDSF_3001 IPR042214 Pseudouridine synthase, TruD, catalytic domain YPDSF_3001 IPR020119 Pseudouridine synthase TruD, conserved site YPDSF_3001 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPDSF_3001 IPR011760 Pseudouridine synthase, TruD, insertion domain YPDSF_3001 IPR001656 Pseudouridine synthase, TruD YPDSF_3002 IPR002828 Survival protein SurE-like phosphatase/nucleotidase YPDSF_3002 IPR030048 Survival protein SurE YPDSF_3002 IPR036523 SurE-like phosphatase/nucleotidase superfamily YPDSF_3003 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_3003 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase YPDSF_3004 IPR011055 Duplicated hybrid motif YPDSF_3004 IPR016047 Peptidase M23 YPDSF_3004 IPR018392 LysM domain YPDSF_3004 IPR036779 LysM domain superfamily YPDSF_3005 IPR009042 RNA polymerase sigma-70 region 1.2 YPDSF_3005 IPR007627 RNA polymerase sigma-70 region 2 YPDSF_3005 IPR007624 RNA polymerase sigma-70 region 3 YPDSF_3005 IPR007630 RNA polymerase sigma-70 region 4 YPDSF_3005 IPR013325 RNA polymerase sigma factor, region 2 YPDSF_3005 IPR013324 RNA polymerase sigma factor, region 3/4-like YPDSF_3005 IPR012761 RNA polymerase sigma factor RpoS YPDSF_3005 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3005 IPR000943 RNA polymerase sigma-70 YPDSF_3005 IPR014284 RNA polymerase sigma-70 like domain YPDSF_3006 IPR007860 DNA mismatch repair protein MutS, connector domain YPDSF_3006 IPR007696 DNA mismatch repair protein MutS, core YPDSF_3006 IPR007861 DNA mismatch repair protein MutS, clamp YPDSF_3006 IPR036678 MutS, connector domain superfamily YPDSF_3006 IPR017261 DNA mismatch repair protein MutS/MSH YPDSF_3006 IPR016151 DNA mismatch repair protein MutS, N-terminal YPDSF_3006 IPR007695 DNA mismatch repair protein MutS-like, N-terminal YPDSF_3006 IPR000432 DNA mismatch repair protein MutS, C-terminal YPDSF_3006 IPR036187 DNA mismatch repair protein MutS, core domain superfamily YPDSF_3006 IPR005748 DNA mismatch repair protein MutS YPDSF_3006 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3008 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily YPDSF_3008 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family YPDSF_3008 IPR004785 Ribose 5-phosphate isomerase B YPDSF_3009 IPR013149 Alcohol dehydrogenase, C-terminal YPDSF_3009 IPR036291 NAD(P)-binding domain superfamily YPDSF_3009 IPR011032 GroES-like superfamily YPDSF_3009 IPR020843 Polyketide synthase, enoylreductase domain YPDSF_3009 IPR013154 Alcohol dehydrogenase, N-terminal YPDSF_3010 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPDSF_3010 IPR002347 Short-chain dehydrogenase/reductase SDR YPDSF_3010 IPR036291 NAD(P)-binding domain superfamily YPDSF_3011 IPR004006 DhaK domain YPDSF_3012 IPR036117 DhaL domain superfamily YPDSF_3012 IPR012737 Dihydroxyacetone kinase, subunit L YPDSF_3012 IPR004007 DhaL domain YPDSF_3013 IPR009057 Homeobox-like domain superfamily YPDSF_3013 IPR011991 ArsR-like helix-turn-helix domain YPDSF_3013 IPR025246 Transposase IS30-like HTH domain YPDSF_3013 IPR037171 NagB/RpiA transferase-like YPDSF_3013 IPR007324 Sugar-binding domain, putative YPDSF_3014 IPR000802 Arsenical pump membrane protein, ArsB YPDSF_3015 IPR018334 ArsR-type transcription regulator, HTH motif YPDSF_3015 IPR001845 HTH ArsR-type DNA-binding domain YPDSF_3015 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3015 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_3015 IPR011991 ArsR-like helix-turn-helix domain YPDSF_3017 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YPDSF_3017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPDSF_3017 IPR018313 Solute-binding protein family 3, conserved site YPDSF_3018 IPR025992 Haem-binding domain YPDSF_3018 IPR009056 Cytochrome c-like domain YPDSF_3018 IPR036909 Cytochrome c-like domain superfamily YPDSF_3018 IPR004852 Di-haem cytochrome c peroxidase YPDSF_3020 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPDSF_3020 IPR010916 TonB box, conserved site YPDSF_3020 IPR010917 TonB-dependent receptor, conserved site YPDSF_3020 IPR037066 TonB-dependent receptor, plug domain superfamily YPDSF_3020 IPR012910 TonB-dependent receptor, plug domain YPDSF_3020 IPR039426 Vitamin B12 transporter BtuB-like YPDSF_3020 IPR000531 TonB-dependent receptor-like, beta-barrel YPDSF_3026 IPR020557 Fumarate lyase, conserved site YPDSF_3026 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily YPDSF_3026 IPR011167 Iron-dependent fumarate hydratase YPDSF_3026 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain YPDSF_3026 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain YPDSF_3027 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPDSF_3027 IPR018483 Carbohydrate kinase, FGGY, conserved site YPDSF_3027 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPDSF_3027 IPR000577 Carbohydrate kinase, FGGY YPDSF_3028 IPR001719 AP endonuclease 2 YPDSF_3028 IPR004560 L-ribulose-5-phosphate 3-epimerase YPDSF_3028 IPR036237 Xylose isomerase-like superfamily YPDSF_3028 IPR013022 Xylose isomerase-like, TIM barrel domain YPDSF_3029 IPR001851 ABC transporter, permease YPDSF_3030 IPR001851 ABC transporter, permease YPDSF_3031 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3031 IPR017871 ABC transporter, conserved site YPDSF_3031 IPR003439 ABC transporter-like YPDSF_3031 IPR003593 AAA+ ATPase domain YPDSF_3031 IPR015861 ABC transporter, ribose import, RbsA YPDSF_3033 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_3033 IPR037171 NagB/RpiA transferase-like YPDSF_3033 IPR001034 DeoR-type HTH domain YPDSF_3033 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3033 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPDSF_3033 IPR014036 DeoR C-terminal sensor domain YPDSF_3034 IPR001303 Class II aldolase/adducin N-terminal YPDSF_3034 IPR004661 L-ribulose-5-phosphate 4-epimerase YPDSF_3034 IPR033748 L-ribulose-5-phosphate 4-epimerase AraD YPDSF_3034 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPDSF_3035 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE YPDSF_3035 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YPDSF_3035 IPR006311 Twin-arginine translocation pathway, signal sequence YPDSF_3035 IPR009010 Aspartate decarboxylase-like domain superfamily YPDSF_3035 IPR006657 Molybdopterin dinucleotide-binding domain YPDSF_3035 IPR006656 Molybdopterin oxidoreductase YPDSF_3035 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPDSF_3035 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPDSF_3035 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPDSF_3036 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPDSF_3036 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPDSF_3036 IPR014297 Dimethylsulphoxide reductase, chain B YPDSF_3037 IPR007059 DMSO reductase anchor subunit (DmsC) YPDSF_3038 IPR036411 TorD-like superfamily YPDSF_3038 IPR020945 DMSO/Nitrate reductase chaperone YPDSF_3038 IPR028611 Tat proofreading chaperone DmsD YPDSF_3038 IPR026269 Tat proofreading chaperone DmsD-type YPDSF_3039 IPR016174 Di-haem cytochrome, transmembrane YPDSF_3039 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase YPDSF_3040 IPR010980 Cytochrome c/b562 YPDSF_3040 IPR009155 Cytochrome b562 YPDSF_3041 IPR000763 Catalase-peroxidase haem YPDSF_3041 IPR002016 Haem peroxidase YPDSF_3041 IPR010255 Haem peroxidase superfamily YPDSF_3041 IPR019794 Peroxidase, active site YPDSF_3041 IPR019793 Peroxidases heam-ligand binding site YPDSF_3044 IPR017871 ABC transporter, conserved site YPDSF_3044 IPR003593 AAA+ ATPase domain YPDSF_3044 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3044 IPR015861 ABC transporter, ribose import, RbsA YPDSF_3044 IPR003439 ABC transporter-like YPDSF_3045 IPR001851 ABC transporter, permease YPDSF_3046 IPR029061 Thiamin diphosphate-binding fold YPDSF_3046 IPR005474 Transketolase, N-terminal YPDSF_3047 IPR029061 Thiamin diphosphate-binding fold YPDSF_3047 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II YPDSF_3047 IPR005475 Transketolase-like, pyrimidine-binding domain YPDSF_3047 IPR033248 Transketolase, C-terminal domain YPDSF_3048 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPDSF_3048 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPDSF_3048 IPR000577 Carbohydrate kinase, FGGY YPDSF_3048 IPR042016 Apulose kinase YPDSF_3052 IPR036259 MFS transporter superfamily YPDSF_3052 IPR020846 Major facilitator superfamily domain YPDSF_3052 IPR023745 MSF-type transporter, YcaD YPDSF_3052 IPR011701 Major facilitator superfamily YPDSF_3053 IPR036653 CinA-like, C-terminal YPDSF_3053 IPR008136 CinA, C-terminal YPDSF_3054 IPR003593 AAA+ ATPase domain YPDSF_3054 IPR020584 DNA recombination/repair protein RecA, conserved site YPDSF_3054 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3054 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain YPDSF_3054 IPR013765 DNA recombination and repair protein RecA YPDSF_3054 IPR023400 DNA recombination and repair protein RecA, C-terminal YPDSF_3054 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface YPDSF_3055 IPR003783 Regulatory protein RecX YPDSF_3055 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3056 IPR003156 DHHA1 domain YPDSF_3056 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria YPDSF_3056 IPR009000 Translation protein, beta-barrel domain superfamily YPDSF_3056 IPR018165 Alanyl-tRNA synthetase, class IIc, core domain YPDSF_3056 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily YPDSF_3056 IPR012947 Threonyl/alanyl tRNA synthetase, SAD YPDSF_3056 IPR002318 Alanine-tRNA ligase, class IIc YPDSF_3056 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily YPDSF_3056 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal YPDSF_3057 IPR036107 Carbon storage regulator superfamily YPDSF_3057 IPR003751 Translational regulator CsrA YPDSF_3058 IPR023214 HAD superfamily YPDSF_3058 IPR036412 HAD-like superfamily YPDSF_3058 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPDSF_3058 IPR006439 HAD hydrolase, subfamily IA YPDSF_3058 IPR010976 Beta-phosphoglucomutase hydrolase YPDSF_3058 IPR041492 Haloacid dehalogenase-like hydrolase YPDSF_3059 IPR032816 SNARE associated Golgi protein YPDSF_3060 IPR007370 Glutamate--cysteine ligase YPDSF_3060 IPR006334 Glutamate--cysteine ligase, monofunctional YPDSF_3060 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain YPDSF_3061 IPR037005 S-ribosylhomocysteinase (LuxS) superfamily YPDSF_3061 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like YPDSF_3061 IPR003815 S-ribosylhomocysteinase (LuxS) YPDSF_3062 IPR005170 Transporter-associated domain YPDSF_3062 IPR016169 FAD-binding, type PCMH, subdomain 2 YPDSF_3062 IPR002550 CNNM, transmembrane domain YPDSF_3062 IPR000644 CBS domain YPDSF_3062 IPR036318 FAD-binding, type PCMH-like superfamily YPDSF_3063 IPR002541 Cytochrome c assembly protein YPDSF_3064 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily YPDSF_3064 IPR022941 Signal recognition particle, SRP54 subunit YPDSF_3064 IPR004780 Signal recognition particle protein YPDSF_3064 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain YPDSF_3064 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily YPDSF_3064 IPR013822 Signal recognition particle SRP54, helical bundle YPDSF_3064 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3064 IPR004125 Signal recognition particle, SRP54 subunit, M-domain YPDSF_3064 IPR003593 AAA+ ATPase domain YPDSF_3066 IPR000307 Ribosomal protein S16 YPDSF_3066 IPR020592 Ribosomal protein S16, conserved site YPDSF_3066 IPR023803 Ribosomal protein S16 domain superfamily YPDSF_3067 IPR036976 RimM, N-terminal domain superfamily YPDSF_3067 IPR009000 Translation protein, beta-barrel domain superfamily YPDSF_3067 IPR027275 PRC-barrel domain YPDSF_3067 IPR011961 16S rRNA processing protein RimM YPDSF_3067 IPR011033 PRC-barrel-like superfamily YPDSF_3067 IPR002676 RimM, N-terminal YPDSF_3068 IPR029028 Alpha/beta knot methyltransferases YPDSF_3068 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain YPDSF_3068 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPDSF_3068 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal YPDSF_3068 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria YPDSF_3069 IPR001857 Ribosomal protein L19 YPDSF_3069 IPR018257 Ribosomal protein L19, conserved site YPDSF_3069 IPR008991 Translation protein SH3-like domain superfamily YPDSF_3069 IPR038657 Ribosomal protein L19 superfamily YPDSF_3070 IPR007433 Protein of unknown function DUF481 YPDSF_3071 IPR004668 Anaerobic c4-dicarboxylate membrane transporter YPDSF_3072 IPR004668 Anaerobic c4-dicarboxylate membrane transporter YPDSF_3073 IPR001789 Signal transduction response regulator, receiver domain YPDSF_3073 IPR007492 LytTR DNA-binding domain YPDSF_3073 IPR011006 CheY-like superfamily YPDSF_3074 IPR006218 DAHP synthetase I/KDSA YPDSF_3074 IPR013785 Aldolase-type TIM barrel YPDSF_3074 IPR006219 DHAP synthase, class 1 YPDSF_3075 IPR017894 HTH domain, IS21 transposase-type YPDSF_3075 IPR001584 Integrase, catalytic core YPDSF_3075 IPR006120 Resolvase, HTH domain YPDSF_3075 IPR012337 Ribonuclease H-like superfamily YPDSF_3075 IPR036397 Ribonuclease H superfamily YPDSF_3076 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3076 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_3076 IPR002611 IstB-like ATP-binding protein YPDSF_3076 IPR003593 AAA+ ATPase domain YPDSF_3076 IPR001270 ClpA/B family YPDSF_3077 IPR000086 NUDIX hydrolase domain YPDSF_3077 IPR003561 Mutator MutT YPDSF_3077 IPR020084 NUDIX hydrolase, conserved site YPDSF_3077 IPR020476 NUDIX hydrolase YPDSF_3077 IPR015797 NUDIX hydrolase-like domain superfamily YPDSF_3078 IPR011130 SecA, preprotein cross-linking domain YPDSF_3078 IPR036670 SecA, preprotein cross-linking domain superfamily YPDSF_3078 IPR011115 SecA DEAD-like, N-terminal YPDSF_3078 IPR000185 Protein translocase subunit SecA YPDSF_3078 IPR004027 SEC-C motif YPDSF_3078 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3078 IPR014018 SecA motor DEAD YPDSF_3078 IPR020937 SecA conserved site YPDSF_3078 IPR036266 SecA, Wing/Scaffold superfamily YPDSF_3078 IPR011116 SecA Wing/Scaffold YPDSF_3079 IPR009502 Secretion monitor YPDSF_3081 IPR020568 Ribosomal protein S5 domain 2-type fold YPDSF_3081 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase YPDSF_3081 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal YPDSF_3081 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal YPDSF_3082 IPR003008 Tubulin/FtsZ, GTPase domain YPDSF_3082 IPR000158 Cell division protein FtsZ YPDSF_3082 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain YPDSF_3082 IPR036525 Tubulin/FtsZ, GTPase domain superfamily YPDSF_3082 IPR020805 Cell division protein FtsZ, conserved site YPDSF_3082 IPR024757 Cell division protein FtsZ, C-terminal YPDSF_3082 IPR008280 Tubulin/FtsZ, C-terminal YPDSF_3083 IPR003494 SHS2 domain inserted in FtsA YPDSF_3083 IPR020823 Cell division protein FtsA YPDSF_3084 IPR034746 POTRA domain YPDSF_3084 IPR013685 POTRA domain, FtsQ-type YPDSF_3084 IPR005548 Cell division protein FtsQ/DivIB YPDSF_3084 IPR026579 Cell division protein FtsQ YPDSF_3085 IPR005905 D-alanine--D-alanine ligase YPDSF_3085 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site YPDSF_3085 IPR011127 D-alanine--D-alanine ligase, N-terminal domain YPDSF_3085 IPR016185 Pre-ATP-grasp domain superfamily YPDSF_3085 IPR013815 ATP-grasp fold, subdomain 1 YPDSF_3085 IPR011761 ATP-grasp fold YPDSF_3085 IPR011095 D-alanine--D-alanine ligase, C-terminal YPDSF_3086 IPR005758 UDP-N-acetylmuramate--L-alanine ligase YPDSF_3086 IPR000713 Mur ligase, N-terminal catalytic domain YPDSF_3086 IPR013221 Mur ligase, central YPDSF_3086 IPR004101 Mur ligase, C-terminal YPDSF_3086 IPR036565 Mur-like, catalytic domain superfamily YPDSF_3086 IPR036615 Mur ligase, C-terminal domain superfamily YPDSF_3087 IPR004276 Glycosyltransferase family 28, N-terminal domain YPDSF_3087 IPR007235 Glycosyl transferase, family 28, C-terminal YPDSF_3087 IPR006009 N-acetylglucosaminyltransferase, MurG YPDSF_3088 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site YPDSF_3088 IPR013437 Probable peptidoglycan glycosyltransferase FtsW YPDSF_3088 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA YPDSF_3089 IPR036565 Mur-like, catalytic domain superfamily YPDSF_3089 IPR004101 Mur ligase, C-terminal YPDSF_3089 IPR036615 Mur ligase, C-terminal domain superfamily YPDSF_3089 IPR013221 Mur ligase, central YPDSF_3089 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase YPDSF_3090 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site YPDSF_3090 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase YPDSF_3090 IPR000715 Glycosyl transferase, family 4 YPDSF_3091 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase YPDSF_3091 IPR035911 MurE/MurF, N-terminal YPDSF_3091 IPR013221 Mur ligase, central YPDSF_3091 IPR036615 Mur ligase, C-terminal domain superfamily YPDSF_3091 IPR004101 Mur ligase, C-terminal YPDSF_3091 IPR036565 Mur-like, catalytic domain superfamily YPDSF_3091 IPR000713 Mur ligase, N-terminal catalytic domain YPDSF_3092 IPR036565 Mur-like, catalytic domain superfamily YPDSF_3092 IPR035911 MurE/MurF, N-terminal YPDSF_3092 IPR036615 Mur ligase, C-terminal domain superfamily YPDSF_3092 IPR013221 Mur ligase, central YPDSF_3092 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase YPDSF_3092 IPR000713 Mur ligase, N-terminal catalytic domain YPDSF_3092 IPR004101 Mur ligase, C-terminal YPDSF_3093 IPR001460 Penicillin-binding protein, transpeptidase YPDSF_3093 IPR012338 Beta-lactamase/transpeptidase-like YPDSF_3093 IPR005311 Penicillin-binding protein, dimerisation domain YPDSF_3093 IPR036138 Penicillin-binding protein, dimerisation domain superfamily YPDSF_3093 IPR037532 Peptidoglycan D,D-transpeptidase FtsI YPDSF_3094 IPR011922 Cell division protein FtsL YPDSF_3095 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily YPDSF_3095 IPR002903 Ribosomal RNA small subunit methyltransferase H YPDSF_3095 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_3096 IPR003444 Transcriptional regulator MraZ YPDSF_3096 IPR035644 MraZ, C-terminal YPDSF_3096 IPR020603 MraZ domain YPDSF_3096 IPR035642 MraZ, N-terminal YPDSF_3096 IPR038619 MraZ superfamily YPDSF_3096 IPR007159 SpoVT-AbrB domain YPDSF_3096 IPR037914 SpoVT-AbrB domain superfamily YPDSF_3097 IPR010574 L-alanine exporter AlaE YPDSF_3099 IPR028082 Periplasmic binding protein-like I YPDSF_3099 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPDSF_3099 IPR012781 D-fructose-responsive transcription factor YPDSF_3099 IPR000843 LacI-type HTH domain YPDSF_3099 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPDSF_3100 IPR036515 Transposase IS200-like superfamily YPDSF_3100 IPR002686 Transposase IS200-like YPDSF_3101 IPR039557 AHAS, ACT domain YPDSF_3101 IPR002912 ACT domain YPDSF_3101 IPR019455 Acetolactate synthase, small subunit, C-terminal YPDSF_3101 IPR004789 Acetolactate synthase, small subunit YPDSF_3101 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal YPDSF_3102 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPDSF_3102 IPR000399 TPP-binding enzyme, conserved site YPDSF_3102 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPDSF_3102 IPR012000 Thiamine pyrophosphate enzyme, central domain YPDSF_3102 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPDSF_3102 IPR039368 Acetolactate synthase large subunit, TPP binding domain YPDSF_3102 IPR012846 Acetolactate synthase, large subunit, biosynthetic YPDSF_3102 IPR029061 Thiamin diphosphate-binding fold YPDSF_3103 IPR001207 Transposase, mutator type YPDSF_3104 IPR000873 AMP-dependent synthetase/ligase YPDSF_3104 IPR042099 AMP-dependent synthetase-like superfamily YPDSF_3104 IPR020845 AMP-binding, conserved site YPDSF_3105 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_3105 IPR000847 Transcription regulator HTH, LysR YPDSF_3105 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3105 IPR005119 LysR, substrate-binding YPDSF_3106 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily YPDSF_3106 IPR013785 Aldolase-type TIM barrel YPDSF_3106 IPR005671 2-isopropylmalate synthase, bacterial-type YPDSF_3106 IPR000891 Pyruvate carboxyltransferase YPDSF_3106 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site YPDSF_3106 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain YPDSF_3107 IPR004429 Isopropylmalate dehydrogenase YPDSF_3107 IPR024084 Isopropylmalate dehydrogenase-like domain YPDSF_3107 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site YPDSF_3108 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain YPDSF_3108 IPR036008 Aconitase, iron-sulfur domain YPDSF_3108 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 YPDSF_3108 IPR033941 3-Isopropylmalate dehydratase, catalytic domain YPDSF_3108 IPR018136 Aconitase family, 4Fe-4S cluster binding site YPDSF_3108 IPR004430 3-isopropylmalate dehydratase, large subunit YPDSF_3109 IPR004431 3-isopropylmalate dehydratase, small subunit YPDSF_3109 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel YPDSF_3109 IPR033940 3-isopropylmalate dehydratase, swivel domain YPDSF_3109 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain YPDSF_3110 IPR004750 Sugar efflux YPDSF_3110 IPR011701 Major facilitator superfamily YPDSF_3110 IPR020846 Major facilitator superfamily domain YPDSF_3110 IPR036259 MFS transporter superfamily YPDSF_3111 IPR039424 Solute-binding protein family 5 YPDSF_3111 IPR023767 Transcriptional regulator SgrR YPDSF_3111 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_3111 IPR000914 Solute-binding protein family 5 domain YPDSF_3111 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain YPDSF_3112 IPR005948 Thiamine/thiamin pyrophosphate-binding periplasmic protein, ABC transporter YPDSF_3112 IPR005967 Thiamin/thiamin pyrophosphate ABC transporter, substrate-binding protein, Proteobacteria YPDSF_3112 IPR006061 Solute-binding family 1, conserved site YPDSF_3113 IPR005947 Thiamine ABC transporter, permease protein YPDSF_3113 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_3113 IPR035906 MetI-like superfamily YPDSF_3114 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ YPDSF_3114 IPR003593 AAA+ ATPase domain YPDSF_3114 IPR003439 ABC transporter-like YPDSF_3114 IPR017871 ABC transporter, conserved site YPDSF_3114 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3115 IPR032816 SNARE associated Golgi protein YPDSF_3115 IPR032818 DedA family YPDSF_3116 IPR006172 DNA-directed DNA polymerase, family B YPDSF_3116 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain YPDSF_3116 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain YPDSF_3116 IPR017964 DNA-directed DNA polymerase, family B, conserved site YPDSF_3116 IPR023211 DNA polymerase, palm domain superfamily YPDSF_3116 IPR012337 Ribonuclease H-like superfamily YPDSF_3116 IPR036397 Ribonuclease H superfamily YPDSF_3116 IPR042087 DNA polymerase family B, C-terminal domain YPDSF_3117 IPR040765 RapA, N-terminal Tudor like domain 1 YPDSF_3117 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPDSF_3117 IPR001650 Helicase, C-terminal YPDSF_3117 IPR000330 SNF2-related, N-terminal domain YPDSF_3117 IPR038718 SNF2-like, N-terminal domain superfamily YPDSF_3117 IPR022737 RNA polymerase recycling, bacterial, C-terminal YPDSF_3117 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3117 IPR023949 RNA polymerase-associated protein RapA YPDSF_3117 IPR040766 RapA, N-terminal Tudor-like domain 2 YPDSF_3120 IPR006665 OmpA-like domain YPDSF_3120 IPR036737 OmpA-like domain superfamily YPDSF_3120 IPR006690 Outer membrane protein, OmpA-like, conserved site YPDSF_3120 IPR006664 Outer membrane protein, bacterial YPDSF_3120 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPDSF_3120 IPR008722 Outer membrane porin F, N-terminal YPDSF_3127 IPR006531 Gp5 N-terminal YPDSF_3127 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPDSF_3127 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPDSF_3127 IPR037026 Vgr protein, OB-fold domain superfamily YPDSF_3128 IPR004176 Clp, N-terminal YPDSF_3128 IPR001270 ClpA/B family YPDSF_3128 IPR018368 ClpA/B, conserved site 1 YPDSF_3128 IPR036628 Clp, N-terminal domain superfamily YPDSF_3128 IPR003593 AAA+ ATPase domain YPDSF_3128 IPR017729 Type VI secretion system, ATPase ClpV1 YPDSF_3128 IPR019489 Clp ATPase, C-terminal YPDSF_3128 IPR041546 ClpA/ClpB, AAA lid domain YPDSF_3128 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3128 IPR003959 ATPase, AAA-type, core YPDSF_3137 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YPDSF_3137 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPDSF_3137 IPR006145 Pseudouridine synthase, RsuA/RluA YPDSF_3138 IPR007791 Co-chaperone DjlA, N-terminal YPDSF_3138 IPR036869 Chaperone J-domain superfamily YPDSF_3138 IPR029024 TerB-like YPDSF_3138 IPR001623 DnaJ domain YPDSF_3138 IPR023749 Co-chaperone DjlA YPDSF_3139 IPR020889 LPS-assembly protein LptD YPDSF_3139 IPR007543 LptD, C-terminal YPDSF_3139 IPR005653 Organic solvent tolerance-like, N-terminal YPDSF_3140 IPR027304 Trigger factor/SurA domain superfamily YPDSF_3140 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type YPDSF_3140 IPR023034 Peptidyl-prolyl isomerase SurA YPDSF_3140 IPR015391 SurA N-terminal YPDSF_3141 IPR005255 PdxA family YPDSF_3141 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase YPDSF_3142 IPR023165 rRNA adenine dimethylase-like YPDSF_3142 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_3142 IPR011530 Ribosomal RNA adenine dimethylase YPDSF_3142 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal YPDSF_3142 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site YPDSF_3142 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm YPDSF_3143 IPR007474 ApaG domain YPDSF_3143 IPR023065 Uncharacterised protein family ApaG YPDSF_3143 IPR036767 ApaG domain superfamily YPDSF_3144 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YPDSF_3144 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPDSF_3144 IPR029052 Metallo-dependent phosphatase-like YPDSF_3147 IPR012259 Dihydrofolate reductase YPDSF_3147 IPR001796 Dihydrofolate reductase domain YPDSF_3147 IPR024072 Dihydrofolate reductase-like domain superfamily YPDSF_3147 IPR017925 Dihydrofolate reductase conserved site YPDSF_3148 IPR024528 Threonine/Serine exporter, ThrE YPDSF_3148 IPR020914 Uncharacterised protein family UPF0442 YPDSF_3149 IPR010619 Putative threonine/serine exporter YPDSF_3150 IPR004778 Homoserine/Threonine efflux protein YPDSF_3150 IPR001123 Amino acid exporter protein, LeuE-type YPDSF_3151 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain YPDSF_3151 IPR016185 Pre-ATP-grasp domain superfamily YPDSF_3151 IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain YPDSF_3151 IPR036914 Methylglyoxal synthase-like domain superfamily YPDSF_3151 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain YPDSF_3151 IPR011607 Methylglyoxal synthase-like domain YPDSF_3151 IPR006275 Carbamoyl-phosphate synthase, large subunit YPDSF_3151 IPR011761 ATP-grasp fold YPDSF_3151 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain YPDSF_3151 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily YPDSF_3152 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily YPDSF_3152 IPR017926 Glutamine amidotransferase YPDSF_3152 IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain YPDSF_3152 IPR029062 Class I glutamine amidotransferase-like YPDSF_3152 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain YPDSF_3152 IPR006274 Carbamoyl-phosphate synthase, small subunit YPDSF_3153 IPR023940 Dihydrodipicolinate reductase YPDSF_3153 IPR022664 Dihydrodipicolinate reductase, conserved site YPDSF_3153 IPR000846 Dihydrodipicolinate reductase, N-terminal YPDSF_3153 IPR022663 Dihydrodipicolinate reductase, C-terminal YPDSF_3153 IPR036291 NAD(P)-binding domain superfamily YPDSF_3154 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YPDSF_3155 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YPDSF_3156 IPR001872 Peptidase A8, signal peptidase II YPDSF_3157 IPR010663 Zinc finger, FPG/IleRS-type YPDSF_3157 IPR002301 Isoleucine-tRNA ligase YPDSF_3157 IPR002300 Aminoacyl-tRNA synthetase, class Ia YPDSF_3157 IPR033708 Isoleucyl tRNA synthetase type 1, anticodon-binding domain YPDSF_3157 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_3157 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YPDSF_3157 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPDSF_3157 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding YPDSF_3157 IPR023585 Isoleucine-tRNA ligase, type 1 YPDSF_3157 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain YPDSF_3158 IPR002606 Riboflavin kinase, bacterial YPDSF_3158 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic YPDSF_3158 IPR023468 Riboflavin kinase YPDSF_3158 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_3158 IPR023465 Riboflavin kinase domain superfamily YPDSF_3158 IPR015864 FAD synthetase YPDSF_3159 IPR002583 Ribosomal protein S20 YPDSF_3159 IPR036510 Ribosomal protein S20 superfamily YPDSF_3160 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_3160 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3160 IPR000847 Transcription regulator HTH, LysR YPDSF_3160 IPR005119 LysR, substrate-binding YPDSF_3161 IPR004670 Na+/H+ antiporter NhaA YPDSF_3161 IPR023171 Na/H antiporter domain superfamily YPDSF_3162 IPR008971 HSP40/DnaJ peptide-binding YPDSF_3162 IPR002939 Chaperone DnaJ, C-terminal YPDSF_3162 IPR012724 Chaperone DnaJ YPDSF_3162 IPR001623 DnaJ domain YPDSF_3162 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily YPDSF_3162 IPR036869 Chaperone J-domain superfamily YPDSF_3162 IPR001305 Heat shock protein DnaJ, cysteine-rich domain YPDSF_3162 IPR018253 DnaJ domain, conserved site YPDSF_3163 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily YPDSF_3163 IPR018181 Heat shock protein 70, conserved site YPDSF_3163 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily YPDSF_3163 IPR013126 Heat shock protein 70 family YPDSF_3163 IPR012725 Chaperone DnaK YPDSF_3164 IPR000791 Acetate transporter GPR1/FUN34/SatP family YPDSF_3166 IPR011701 Major facilitator superfamily YPDSF_3166 IPR005829 Sugar transporter, conserved site YPDSF_3166 IPR036259 MFS transporter superfamily YPDSF_3166 IPR020846 Major facilitator superfamily domain YPDSF_3167 IPR008284 Molybdenum cofactor biosynthesis, conserved site YPDSF_3167 IPR001453 MoaB/Mog domain YPDSF_3167 IPR036425 MoaB/Mog-like domain superfamily YPDSF_3169 IPR018225 Transaldolase, active site YPDSF_3169 IPR004730 Transaldolase type 1 YPDSF_3169 IPR001585 Transaldolase/Fructose-6-phosphate aldolase YPDSF_3169 IPR013785 Aldolase-type TIM barrel YPDSF_3171 IPR005583 Peroxide stress protein YaaA YPDSF_3172 IPR037158 Threonine synthase, N-terminal domain superfamily YPDSF_3172 IPR004450 Threonine synthase-like YPDSF_3172 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPDSF_3172 IPR001926 Pyridoxal-phosphate dependent enzyme YPDSF_3172 IPR029144 Threonine synthase, N-terminal YPDSF_3172 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site YPDSF_3173 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPDSF_3173 IPR013750 GHMP kinase, C-terminal domain YPDSF_3173 IPR036554 GHMP kinase, C-terminal domain superfamily YPDSF_3173 IPR020568 Ribosomal protein S5 domain 2-type fold YPDSF_3173 IPR000870 Homoserine kinase YPDSF_3173 IPR006204 GHMP kinase N-terminal domain YPDSF_3173 IPR006203 GHMP kinase, ATP-binding, conserved site YPDSF_3174 IPR041743 Bifunctional aspartokinase/homoserine dehydrogenase, N-terminal catalytic domain YPDSF_3174 IPR036291 NAD(P)-binding domain superfamily YPDSF_3174 IPR001048 Aspartate/glutamate/uridylate kinase YPDSF_3174 IPR001342 Homoserine dehydrogenase, catalytic YPDSF_3174 IPR027795 CASTOR, ACT domain YPDSF_3174 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I YPDSF_3174 IPR019811 Homoserine dehydrogenase, conserved site YPDSF_3174 IPR001341 Aspartate kinase YPDSF_3174 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding YPDSF_3174 IPR002912 ACT domain YPDSF_3174 IPR036393 Acetylglutamate kinase-like superfamily YPDSF_3174 IPR018042 Aspartate kinase, conserved site YPDSF_3176 IPR011006 CheY-like superfamily YPDSF_3176 IPR001867 OmpR/PhoB-type DNA-binding domain YPDSF_3176 IPR016032 Signal transduction response regulator, C-terminal effector YPDSF_3176 IPR001789 Signal transduction response regulator, receiver domain YPDSF_3176 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3176 IPR039420 Transcriptional regulatory protein WalR-like YPDSF_3177 IPR010292 Uncharacterised protein family CreA YPDSF_3178 IPR029442 GyrI-like small molecule binding domain YPDSF_3178 IPR009057 Homeobox-like domain superfamily YPDSF_3178 IPR011256 Regulatory factor, effector binding domain superfamily YPDSF_3178 IPR018060 DNA binding HTH domain, AraC-type YPDSF_3178 IPR018062 HTH domain AraC-type, conserved site YPDSF_3178 IPR010499 Bacterial transcription activator, effector binding YPDSF_3178 IPR020449 Transcription regulator HTH, AraC- type YPDSF_3179 IPR023086 Phosphoglycerate mutase, GpmB, probable YPDSF_3179 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site YPDSF_3179 IPR013078 Histidine phosphatase superfamily, clade-1 YPDSF_3179 IPR029033 Histidine phosphatase superfamily YPDSF_3180 IPR029001 Inosine triphosphate pyrophosphatase-like YPDSF_3180 IPR002786 Inosine/xanthosine triphosphatase YPDSF_3180 IPR026533 Non-canonical purine NTP phosphatase/PRRC1 YPDSF_3181 IPR038116 TrpR-like superfamily YPDSF_3181 IPR000831 Trp repressor YPDSF_3181 IPR013335 Trp repressor, bacterial YPDSF_3181 IPR010921 Trp repressor/replication initiator YPDSF_3182 IPR037061 Lytic transglycosylase, superhelical linker domain superfamily YPDSF_3182 IPR008939 Lytic transglycosylase, superhelical U-shaped YPDSF_3182 IPR000189 Prokaryotic transglycosylase, active site YPDSF_3182 IPR023346 Lysozyme-like domain superfamily YPDSF_3182 IPR008258 Transglycosylase SLT domain 1 YPDSF_3182 IPR012289 Lytic transglycosylase, superhelical linker YPDSF_3183 IPR004014 Cation-transporting P-type ATPase, N-terminal YPDSF_3183 IPR006068 Cation-transporting P-type ATPase, C-terminal YPDSF_3183 IPR018303 P-type ATPase, phosphorylation site YPDSF_3183 IPR001757 P-type ATPase YPDSF_3183 IPR023214 HAD superfamily YPDSF_3183 IPR036412 HAD-like superfamily YPDSF_3183 IPR023299 P-type ATPase, cytoplasmic domain N YPDSF_3183 IPR008250 P-type ATPase, A domain superfamily YPDSF_3183 IPR023298 P-type ATPase, transmembrane domain superfamily YPDSF_3185 IPR033417 Periplasmic sensor domain CHASE8 YPDSF_3185 IPR000160 GGDEF domain YPDSF_3185 IPR029787 Nucleotide cyclase YPDSF_3185 IPR003660 HAMP domain YPDSF_3186 IPR006665 OmpA-like domain YPDSF_3186 IPR036737 OmpA-like domain superfamily YPDSF_3186 IPR006664 Outer membrane protein, bacterial YPDSF_3187 IPR003593 AAA+ ATPase domain YPDSF_3187 IPR032781 ABC-transporter extension domain YPDSF_3187 IPR003439 ABC transporter-like YPDSF_3187 IPR017871 ABC transporter, conserved site YPDSF_3187 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3187 IPR022374 Energy-dependent translational throttle protein EttA YPDSF_3190 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_3190 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3190 IPR041749 NadR, nicotinamide/nicotinate mononucleotide adenylyltransferase domain YPDSF_3190 IPR006417 Nicotinamide-nucleotide adenylyltransferase YPDSF_3190 IPR038727 NadR/Ttd14, AAA domain YPDSF_3190 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPDSF_3190 IPR004821 Cytidyltransferase-like domain YPDSF_3190 IPR001387 Cro/C1-type helix-turn-helix domain YPDSF_3190 IPR016429 NAD biosynthesis/regulator protein NadR YPDSF_3191 IPR003593 AAA+ ATPase domain YPDSF_3191 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPDSF_3191 IPR041166 LapB, rubredoxin metal binding domain YPDSF_3191 IPR004504 DNA repair protein RadA YPDSF_3191 IPR020568 Ribosomal protein S5 domain 2-type fold YPDSF_3191 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain YPDSF_3191 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3192 IPR036412 HAD-like superfamily YPDSF_3192 IPR023214 HAD superfamily YPDSF_3192 IPR023190 Phosphoserine phosphatase, domain 2 YPDSF_3192 IPR041449 Phosphoserine phosphatase, N-terminal YPDSF_3193 IPR019305 Uncharacterised protein family Smp YPDSF_3194 IPR004402 Purine nucleoside phosphorylase DeoD-type YPDSF_3194 IPR018016 Nucleoside phosphorylase, conserved site YPDSF_3194 IPR000845 Nucleoside phosphorylase domain YPDSF_3194 IPR035994 Nucleoside phosphorylase superfamily YPDSF_3195 IPR006124 Metalloenzyme YPDSF_3195 IPR024052 Phosphopentomutase DeoB cap domain superfamily YPDSF_3195 IPR010045 Phosphopentomutase YPDSF_3195 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPDSF_3196 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily YPDSF_3196 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase YPDSF_3196 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site YPDSF_3196 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily YPDSF_3196 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily YPDSF_3196 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic YPDSF_3196 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal YPDSF_3196 IPR013465 Thymidine phosphorylase YPDSF_3196 IPR000312 Glycosyl transferase, family 3 YPDSF_3196 IPR017459 Glycosyl transferase family 3, N-terminal domain YPDSF_3197 IPR011343 Deoxyribose-phosphate aldolase YPDSF_3197 IPR023649 Deoxyribose-phosphate aldolase type II YPDSF_3197 IPR002915 DeoC/FbaB/ lacD aldolase YPDSF_3197 IPR013785 Aldolase-type TIM barrel YPDSF_3198 IPR002668 Concentrative nucleoside transporter N-terminal domain YPDSF_3198 IPR011657 Concentrative nucleoside transporter C-terminal domain YPDSF_3198 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial YPDSF_3198 IPR008276 Concentrative nucleoside transporter YPDSF_3198 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain YPDSF_3199 IPR032466 Metal-dependent hydrolase YPDSF_3199 IPR018228 Deoxyribonuclease, TatD-related, conserved site YPDSF_3199 IPR001130 TatD family YPDSF_3200 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPDSF_3200 IPR037483 YjjU-like YPDSF_3200 IPR002641 Patatin-like phospholipase domain YPDSF_3201 IPR009760 Protein of unknown function DUF1328 YPDSF_3202 IPR014004 Transport-associated and nodulation domain, bacteria YPDSF_3202 IPR007055 BON domain YPDSF_3203 IPR035647 EF-G domain III/V-like YPDSF_3203 IPR009000 Translation protein, beta-barrel domain superfamily YPDSF_3203 IPR032090 Peptide chain release factor 3, C-terminal YPDSF_3203 IPR004548 Peptide chain release factor 3 YPDSF_3203 IPR031157 Tr-type G domain, conserved site YPDSF_3203 IPR004161 Translation elongation factor EFTu-like, domain 2 YPDSF_3203 IPR000795 Transcription factor, GTP-binding domain YPDSF_3203 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3203 IPR041732 Peptide chain release factor 3, GTP-binding domain YPDSF_3203 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily YPDSF_3203 IPR005225 Small GTP-binding protein domain YPDSF_3204 IPR000182 GNAT domain YPDSF_3204 IPR016181 Acyl-CoA N-acyltransferase YPDSF_3204 IPR006464 N-acetyltransferase RimI/Ard1 YPDSF_3205 IPR013675 Methyltransferase small, N-terminal YPDSF_3205 IPR023543 rRNA small subunit methyltransferase C YPDSF_3205 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_3205 IPR007848 Methyltransferase small domain YPDSF_3205 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPDSF_3206 IPR009885 Protein of unknown function DUF1435 YPDSF_3207 IPR029787 Nucleotide cyclase YPDSF_3207 IPR039435 Diguanylate cyclase DosC, globin sensor domain YPDSF_3207 IPR000160 GGDEF domain YPDSF_3207 IPR012292 Globin/Protoglobin YPDSF_3207 IPR009050 Globin-like superfamily YPDSF_3208 IPR011050 Pectin lyase fold/virulence factor YPDSF_3208 IPR033131 Pectinesterase, Asp active site YPDSF_3208 IPR000070 Pectinesterase, catalytic YPDSF_3208 IPR012334 Pectin lyase fold YPDSF_3211 IPR001036 Acriflavin resistance protein YPDSF_3211 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPDSF_3212 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPDSF_3212 IPR006143 RND efflux pump, membrane fusion protein YPDSF_3215 IPR011916 Lipopolysaccharide heptosyltransferase III, putative YPDSF_3215 IPR002201 Glycosyl transferase, family 9 YPDSF_3216 IPR033676 Autoinducer-2 kinase YPDSF_3216 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPDSF_3216 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPDSF_3216 IPR000577 Carbohydrate kinase, FGGY YPDSF_3217 IPR007324 Sugar-binding domain, putative YPDSF_3217 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3217 IPR037171 NagB/RpiA transferase-like YPDSF_3217 IPR012318 Crp-type HTH domain YPDSF_3219 IPR017871 ABC transporter, conserved site YPDSF_3219 IPR003593 AAA+ ATPase domain YPDSF_3219 IPR003439 ABC transporter-like YPDSF_3219 IPR030281 Autoinducer 2 import ATP-binding protein LsrA YPDSF_3219 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3220 IPR001851 ABC transporter, permease YPDSF_3221 IPR001851 ABC transporter, permease YPDSF_3222 IPR030159 Autoinducer 2 ABC transporter, substrate-binding protein LsrB YPDSF_3222 IPR025997 Periplasmic binding protein YPDSF_3222 IPR028082 Periplasmic binding protein-like I YPDSF_3223 IPR002915 DeoC/FbaB/ lacD aldolase YPDSF_3223 IPR013785 Aldolase-type TIM barrel YPDSF_3223 IPR041720 Aldolase FbaB-like, archaeal-type YPDSF_3223 IPR033673 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase YPDSF_3224 IPR007138 Antibiotic biosynthesis monooxygenase domain YPDSF_3224 IPR011008 Dimeric alpha-beta barrel YPDSF_3224 IPR033672 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase YPDSF_3225 IPR019637 Protein of unknown function DUF2501 YPDSF_3226 IPR036618 PtsI, HPr-binding domain superfamily YPDSF_3226 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPDSF_3226 IPR040442 Pyruvate kinase-like domain superfamily YPDSF_3226 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YPDSF_3226 IPR008731 Phosphotransferase system, enzyme I N-terminal YPDSF_3226 IPR002178 PTS EIIA type-2 domain YPDSF_3226 IPR006318 Phosphotransferase system, enzyme I-like YPDSF_3226 IPR023151 PEP-utilising enzyme, conserved site YPDSF_3226 IPR036637 Phosphohistidine domain superfamily YPDSF_3226 IPR000032 Phosphocarrier protein HPr-like YPDSF_3226 IPR000121 PEP-utilising enzyme, C-terminal YPDSF_3226 IPR018274 PEP-utilising enzyme, active site YPDSF_3226 IPR008279 PEP-utilising enzyme, mobile domain YPDSF_3226 IPR035895 HPr-like superfamily YPDSF_3226 IPR016152 Phosphotransferase/anion transporter YPDSF_3227 IPR006327 Phosphotransferase system, fructose IIC component YPDSF_3227 IPR013014 Phosphotransferase system, EIIC component, type 2 YPDSF_3228 IPR036095 PTS system IIB component-like superfamily YPDSF_3228 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPDSF_3228 IPR013011 Phosphotransferase system, EIIB component, type 2 YPDSF_3228 IPR003353 Phosphotransferase system, fructose-specific IIB subunit YPDSF_3229 IPR036095 PTS system IIB component-like superfamily YPDSF_3229 IPR013011 Phosphotransferase system, EIIB component, type 2 YPDSF_3229 IPR003353 Phosphotransferase system, fructose-specific IIB subunit YPDSF_3229 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPDSF_3230 IPR009057 Homeobox-like domain superfamily YPDSF_3230 IPR018060 DNA binding HTH domain, AraC-type YPDSF_3230 IPR018062 HTH domain AraC-type, conserved site YPDSF_3230 IPR020449 Transcription regulator HTH, AraC- type YPDSF_3232 IPR010295 Protein of unknown function DUF898 YPDSF_3235 IPR012337 Ribonuclease H-like superfamily YPDSF_3235 IPR017894 HTH domain, IS21 transposase-type YPDSF_3235 IPR001584 Integrase, catalytic core YPDSF_3241 IPR002514 Transposase IS3/IS911family YPDSF_3241 IPR009057 Homeobox-like domain superfamily YPDSF_3243 IPR003593 AAA+ ATPase domain YPDSF_3243 IPR021961 Protein of unknown function DUF3578 YPDSF_3243 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3243 IPR011704 ATPase, dynein-related, AAA domain YPDSF_3244 IPR036397 Ribonuclease H superfamily YPDSF_3244 IPR012337 Ribonuclease H-like superfamily YPDSF_3244 IPR006120 Resolvase, HTH domain YPDSF_3244 IPR001584 Integrase, catalytic core YPDSF_3244 IPR017894 HTH domain, IS21 transposase-type YPDSF_3245 IPR002611 IstB-like ATP-binding protein YPDSF_3245 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_3245 IPR001270 ClpA/B family YPDSF_3245 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3245 IPR003593 AAA+ ATPase domain YPDSF_3246 IPR037198 MutL, C-terminal domain superfamily YPDSF_3246 IPR020568 Ribosomal protein S5 domain 2-type fold YPDSF_3246 IPR042120 MutL, C-terminal domain, dimerisation subdomain YPDSF_3246 IPR014790 MutL, C-terminal, dimerisation YPDSF_3246 IPR042121 MutL, C-terminal domain, regulatory subdomain YPDSF_3246 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms YPDSF_3246 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPDSF_3246 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_3246 IPR013507 DNA mismatch repair protein, S5 domain 2-like YPDSF_3246 IPR002099 DNA mismatch repair protein family, N-terminal YPDSF_3246 IPR020667 DNA mismatch repair protein, MutL YPDSF_3246 IPR014762 DNA mismatch repair, conserved site YPDSF_3248 IPR010998 Integrase/recombinase, N-terminal YPDSF_3248 IPR038488 Integrase, DNA-binding domain superfamily YPDSF_3248 IPR025166 Integrase, DNA-binding domain YPDSF_3248 IPR002104 Integrase, catalytic domain YPDSF_3248 IPR013762 Integrase-like, catalytic domain superfamily YPDSF_3248 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPDSF_3249 IPR030923 LPS export ABC transporter permease LptG YPDSF_3249 IPR005495 Permease LptG/LptF-related YPDSF_3250 IPR005495 Permease LptG/LptF-related YPDSF_3250 IPR030922 LPS export ABC transporter permease LptF YPDSF_3251 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B YPDSF_3251 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal YPDSF_3251 IPR023042 Peptidase M17, leucine aminopeptidase YPDSF_3251 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal YPDSF_3252 IPR036768 DNA polymerase III subunit chi superfamily YPDSF_3252 IPR007459 DNA polymerase III chi subunit, HolC YPDSF_3253 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPDSF_3253 IPR002300 Aminoacyl-tRNA synthetase, class Ia YPDSF_3253 IPR002303 Valine-tRNA ligase YPDSF_3253 IPR033705 Valyl tRNA synthetase, anticodon-binding domain YPDSF_3253 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_3253 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding YPDSF_3253 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain YPDSF_3253 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm YPDSF_3253 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm YPDSF_3253 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding YPDSF_3253 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily YPDSF_3254 IPR016181 Acyl-CoA N-acyltransferase YPDSF_3254 IPR000182 GNAT domain YPDSF_3255 IPR016716 Regulator of ribonuclease activity B YPDSF_3255 IPR036701 RraB-like superfamily YPDSF_3255 IPR009671 Regulator of ribonuclease activity B domain YPDSF_3256 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding YPDSF_3256 IPR006130 Aspartate/ornithine carbamoyltransferase YPDSF_3256 IPR024904 Ornithine carbamoyltransferase YPDSF_3256 IPR002292 Ornithine/putrescine carbamoyltransferase YPDSF_3256 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily YPDSF_3256 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain YPDSF_3257 IPR004375 YhcH/YjgK/YiaL family YPDSF_3257 IPR037012 YhcH/YjgK/YiaL superfamily YPDSF_3260 IPR035906 MetI-like superfamily YPDSF_3260 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_3261 IPR035906 MetI-like superfamily YPDSF_3261 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPDSF_3261 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_3262 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPDSF_3262 IPR003439 ABC transporter-like YPDSF_3262 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3262 IPR003593 AAA+ ATPase domain YPDSF_3262 IPR017871 ABC transporter, conserved site YPDSF_3263 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3263 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPDSF_3263 IPR017871 ABC transporter, conserved site YPDSF_3263 IPR003439 ABC transporter-like YPDSF_3263 IPR003593 AAA+ ATPase domain YPDSF_3264 IPR005144 ATP-cone domain YPDSF_3264 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic YPDSF_3264 IPR001150 Glycine radical domain YPDSF_3264 IPR019777 Formate C-acetyltransferase glycine radical, conserved site YPDSF_3265 IPR034457 Organic radical-activating enzymes YPDSF_3265 IPR001989 Radical-activating enzyme, conserved site YPDSF_3265 IPR013785 Aldolase-type TIM barrel YPDSF_3265 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic YPDSF_3266 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YPDSF_3266 IPR000524 Transcription regulator HTH, GntR YPDSF_3266 IPR011663 UbiC transcription regulator-associated YPDSF_3266 IPR012702 Phosphonate C-P lyase system, transcriptional regulator PhnF YPDSF_3266 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_3266 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3267 IPR009609 Phosphonate metabolism PhnG YPDSF_3268 IPR038058 PhnH-like superfamily YPDSF_3268 IPR008772 Bacterial phosphonate metabolism, PhnH YPDSF_3269 IPR008773 Phosphonate metabolism protein PhnI YPDSF_3270 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase YPDSF_3271 IPR003439 ABC transporter-like YPDSF_3271 IPR012700 Phosphonate C-P lyase system, PhnK YPDSF_3271 IPR017871 ABC transporter, conserved site YPDSF_3271 IPR003593 AAA+ ATPase domain YPDSF_3271 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3272 IPR012701 Phosphonate C-P lyase system, PhnL YPDSF_3272 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3272 IPR003593 AAA+ ATPase domain YPDSF_3272 IPR003439 ABC transporter-like YPDSF_3272 IPR017871 ABC transporter, conserved site YPDSF_3273 IPR011059 Metal-dependent hydrolase, composite domain superfamily YPDSF_3273 IPR032466 Metal-dependent hydrolase YPDSF_3273 IPR012696 Phosphonate metabolism PhnM YPDSF_3273 IPR013108 Amidohydrolase 3 YPDSF_3274 IPR008145 Guanylate kinase/L-type calcium channel beta subunit YPDSF_3274 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3274 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN YPDSF_3274 IPR008144 Guanylate kinase-like domain YPDSF_3275 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPDSF_3275 IPR017693 Phosphonate metabolism protein PhnP YPDSF_3275 IPR035682 Phosphonate metabolism protein, MBL domain YPDSF_3275 IPR001279 Metallo-beta-lactamase YPDSF_3276 IPR000534 Semialdehyde dehydrogenase, NAD-binding YPDSF_3276 IPR036291 NAD(P)-binding domain superfamily YPDSF_3276 IPR016040 NAD(P)-binding domain YPDSF_3277 IPR012349 FMN-binding split barrel YPDSF_3277 IPR011194 Uncharacterised protein family UPF0306 YPDSF_3279 IPR003439 ABC transporter-like YPDSF_3279 IPR017871 ABC transporter, conserved site YPDSF_3279 IPR005116 Transport-associated OB, type 1 YPDSF_3279 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3279 IPR040582 MalK, OB fold domain YPDSF_3279 IPR008995 Molybdate/tungstate binding, C-terminal YPDSF_3279 IPR003593 AAA+ ATPase domain YPDSF_3280 IPR035906 MetI-like superfamily YPDSF_3280 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_3282 IPR006059 Bacterial extracellular solute-binding protein YPDSF_3285 IPR022992 Uncharacterised protein family UPF0213, GIY-YIG endonuclease YPDSF_3285 IPR000305 GIY-YIG endonuclease YPDSF_3285 IPR035901 GIY-YIG endonuclease superfamily YPDSF_3286 IPR000182 GNAT domain YPDSF_3286 IPR016181 Acyl-CoA N-acyltransferase YPDSF_3291 IPR010131 RND efflux system, outer membrane lipoprotein, NodT YPDSF_3291 IPR003423 Outer membrane efflux protein YPDSF_3291 IPR012640 Membrane lipoprotein, lipid attachment site YPDSF_3292 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 YPDSF_3292 IPR001036 Acriflavin resistance protein YPDSF_3292 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPDSF_3293 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPDSF_3293 IPR006143 RND efflux pump, membrane fusion protein YPDSF_3294 IPR036661 Luciferase-like domain superfamily YPDSF_3294 IPR019949 Luciferase family oxidoreductase, group 1 YPDSF_3294 IPR011251 Luciferase-like domain YPDSF_3295 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPDSF_3295 IPR001387 Cro/C1-type helix-turn-helix domain YPDSF_3297 IPR001650 Helicase, C-terminal YPDSF_3297 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain YPDSF_3297 IPR014014 RNA helicase, DEAD-box type, Q motif YPDSF_3297 IPR011545 DEAD/DEAH box helicase domain YPDSF_3297 IPR028618 ATP-dependent RNA helicase DeaD YPDSF_3297 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3297 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPDSF_3297 IPR034415 CsdA, RNA recognition motif YPDSF_3297 IPR021046 Cold-shock protein, DEAD box A, C-terminal YPDSF_3297 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPDSF_3297 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily YPDSF_3298 IPR011990 Tetratricopeptide-like helical domain superfamily YPDSF_3298 IPR019734 Tetratricopeptide repeat YPDSF_3298 IPR013105 Tetratricopeptide repeat 2 YPDSF_3298 IPR013026 Tetratricopeptide repeat-containing domain YPDSF_3298 IPR023605 Lipoprotein NlpI YPDSF_3299 IPR004087 K Homology domain YPDSF_3299 IPR004088 K Homology domain, type 1 YPDSF_3299 IPR036345 Exoribonuclease, PH domain 2 superfamily YPDSF_3299 IPR036612 K Homology domain, type 1 superfamily YPDSF_3299 IPR003029 S1 domain YPDSF_3299 IPR012162 Polyribonucleotide nucleotidyltransferase YPDSF_3299 IPR001247 Exoribonuclease, phosphorolytic domain 1 YPDSF_3299 IPR027408 PNPase/RNase PH domain superfamily YPDSF_3299 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain YPDSF_3299 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily YPDSF_3299 IPR020568 Ribosomal protein S5 domain 2-type fold YPDSF_3299 IPR022967 RNA-binding domain, S1 YPDSF_3299 IPR012340 Nucleic acid-binding, OB-fold YPDSF_3299 IPR015847 Exoribonuclease, phosphorolytic domain 2 YPDSF_3300 IPR038965 Transposase InsF-like YPDSF_3300 IPR025948 HTH-like domain YPDSF_3300 IPR001584 Integrase, catalytic core YPDSF_3300 IPR036397 Ribonuclease H superfamily YPDSF_3300 IPR012337 Ribonuclease H-like superfamily YPDSF_3302 IPR031656 Alpha-glycerophosphate oxidase, C-terminal YPDSF_3302 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily YPDSF_3302 IPR006076 FAD dependent oxidoreductase YPDSF_3302 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_3302 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase YPDSF_3303 IPR011833 Glycogen/starch/alpha-glucan phosphorylase YPDSF_3303 IPR000811 Glycosyl transferase, family 35 YPDSF_3303 IPR035090 Phosphorylase pyridoxal-phosphate attachment site YPDSF_3304 IPR013534 Starch synthase, catalytic domain YPDSF_3304 IPR011835 Bacterial/plant glycogen synthase YPDSF_3304 IPR001296 Glycosyl transferase, family 1 YPDSF_3305 IPR029044 Nucleotide-diphospho-sugar transferases YPDSF_3305 IPR011004 Trimeric LpxA-like superfamily YPDSF_3305 IPR005835 Nucleotidyl transferase domain YPDSF_3305 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial YPDSF_3305 IPR005836 ADP-glucose pyrophosphorylase, conserved site YPDSF_3305 IPR011831 Glucose-1-phosphate adenylyltransferase YPDSF_3306 IPR017853 Glycoside hydrolase superfamily YPDSF_3306 IPR004193 Glycoside hydrolase, family 13, N-terminal YPDSF_3306 IPR013783 Immunoglobulin-like fold YPDSF_3306 IPR022844 Glycogen debranching enzyme, bacterial YPDSF_3306 IPR011837 Glycogen debranching enzyme, GlgX type YPDSF_3306 IPR014756 Immunoglobulin E-set YPDSF_3306 IPR040784 Glycogen debranching enzyme, C-terminal domain YPDSF_3306 IPR013780 Glycosyl hydrolase, all-beta YPDSF_3306 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPDSF_3307 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta YPDSF_3307 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPDSF_3307 IPR013780 Glycosyl hydrolase, all-beta YPDSF_3307 IPR017853 Glycoside hydrolase superfamily YPDSF_3307 IPR013783 Immunoglobulin-like fold YPDSF_3307 IPR014756 Immunoglobulin E-set YPDSF_3307 IPR004193 Glycoside hydrolase, family 13, N-terminal YPDSF_3307 IPR037439 1,4-alpha-glucan-branching enzyme YPDSF_3307 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB YPDSF_3308 IPR003018 GAF domain YPDSF_3308 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region YPDSF_3308 IPR010559 Signal transduction histidine kinase, internal region YPDSF_3308 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_3309 IPR013783 Immunoglobulin-like fold YPDSF_3309 IPR013117 Intimin, C-terminal YPDSF_3309 IPR038177 Inverse autotransporter, beta-domain superfamily YPDSF_3309 IPR008964 Invasin/intimin cell-adhesion fragments YPDSF_3309 IPR024519 Inverse autotransporter, beta-domain YPDSF_3309 IPR015217 Invasin, domain 3 YPDSF_3309 IPR016187 C-type lectin fold YPDSF_3309 IPR003535 Intimin/invasin bacterial adhesion mediator protein YPDSF_3309 IPR016186 C-type lectin-like/link domain superfamily YPDSF_3309 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPDSF_3313 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site YPDSF_3313 IPR012080 Aspartate-semialdehyde dehydrogenase YPDSF_3313 IPR036291 NAD(P)-binding domain superfamily YPDSF_3313 IPR000534 Semialdehyde dehydrogenase, NAD-binding YPDSF_3313 IPR012280 Semialdehyde dehydrogenase, dimerisation domain YPDSF_3313 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type YPDSF_3314 IPR002771 Multiple antibiotic resistance (MarC)-related YPDSF_3318 IPR006001 Carbohydrate kinase, thermoresistant glucokinase YPDSF_3318 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3318 IPR031322 Shikimate kinase/gluconokinase YPDSF_3319 IPR003474 Gluconate transporter YPDSF_3320 IPR000843 LacI-type HTH domain YPDSF_3320 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPDSF_3320 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPDSF_3320 IPR028082 Periplasmic binding protein-like I YPDSF_3321 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain YPDSF_3321 IPR003829 Pirin, N-terminal domain YPDSF_3321 IPR012093 Pirin YPDSF_3321 IPR011051 RmlC-like cupin domain superfamily YPDSF_3321 IPR014710 RmlC-like jelly roll fold YPDSF_3322 IPR001789 Signal transduction response regulator, receiver domain YPDSF_3322 IPR039420 Transcriptional regulatory protein WalR-like YPDSF_3322 IPR011006 CheY-like superfamily YPDSF_3322 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3322 IPR001867 OmpR/PhoB-type DNA-binding domain YPDSF_3322 IPR016032 Signal transduction response regulator, C-terminal effector YPDSF_3324 IPR011289 Fructose-1,6-bisphosphate aldolase, class 2 YPDSF_3324 IPR000771 Fructose-bisphosphate aldolase, class-II YPDSF_3324 IPR013785 Aldolase-type TIM barrel YPDSF_3326 IPR028082 Periplasmic binding protein-like I YPDSF_3326 IPR025997 Periplasmic binding protein YPDSF_3327 IPR001851 ABC transporter, permease YPDSF_3328 IPR015861 ABC transporter, ribose import, RbsA YPDSF_3328 IPR017871 ABC transporter, conserved site YPDSF_3328 IPR003439 ABC transporter-like YPDSF_3328 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3328 IPR003593 AAA+ ATPase domain YPDSF_3331 IPR004792 3-Dehydro-bile acid delta(4,6)-reductase-like YPDSF_3331 IPR023166 HI0933-like insert domain superfamily YPDSF_3331 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_3332 IPR001204 Phosphate transporter YPDSF_3334 IPR019598 Universal stress protein B YPDSF_3335 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_3335 IPR006016 UspA YPDSF_3335 IPR006015 Universal stress protein A family YPDSF_3336 IPR033922 NAD(P) binding domain of glutamate dehydrogenase YPDSF_3336 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain YPDSF_3336 IPR036291 NAD(P)-binding domain superfamily YPDSF_3336 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal YPDSF_3336 IPR033524 Leu/Phe/Val dehydrogenases active site YPDSF_3336 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase YPDSF_3336 IPR014362 Glutamate dehydrogenase YPDSF_3337 IPR018511 Hemolysin-type calcium-binding conserved site YPDSF_3337 IPR001343 RTX calcium-binding nonapeptide repeat YPDSF_3337 IPR024079 Metallopeptidase, catalytic domain superfamily YPDSF_3337 IPR001818 Peptidase M10, metallopeptidase YPDSF_3337 IPR016294 Peptidase M10B YPDSF_3337 IPR006026 Peptidase, metallopeptidase YPDSF_3337 IPR034033 Serralysin-like metallopeptidase domain YPDSF_3337 IPR013858 Peptidase M10 serralysin, C-terminal YPDSF_3337 IPR011049 Serralysin-like metalloprotease, C-terminal YPDSF_3338 IPR007536 Ribosomal RNA small subunit methyltransferase J YPDSF_3338 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_3339 IPR001567 Peptidase M3A/M3B catalytic domain YPDSF_3339 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 YPDSF_3341 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_3341 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPDSF_3341 IPR007473 Ribosomal RNA large subunit methyltransferase J YPDSF_3342 IPR023753 FAD/NAD(P)-binding domain YPDSF_3342 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily YPDSF_3342 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I YPDSF_3342 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPDSF_3342 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site YPDSF_3342 IPR006322 Glutathione reductase, eukaryote/bacterial YPDSF_3342 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_3343 IPR008599 Putative sugar diacid recognition YPDSF_3343 IPR042070 PucR C-terminal helix-turn-helix domain superfamily YPDSF_3343 IPR025736 PucR C-terminal helix-turn-helix domain YPDSF_3343 IPR041522 CdaR, GGDEF-like domain YPDSF_3345 IPR003474 Gluconate transporter YPDSF_3346 IPR036129 Glycerate kinase superfamily YPDSF_3346 IPR018197 Glycerate kinase, restriction-enzyme-like fold YPDSF_3346 IPR004381 Glycerate kinase YPDSF_3346 IPR018193 Glycerate kinase, flavodoxin-like fold YPDSF_3351 IPR005274 Inner membrane protein YhjD YPDSF_3351 IPR017039 Virulence factor BrkB YPDSF_3352 IPR036265 HIT-like superfamily YPDSF_3352 IPR038433 CDP-diacylglycerol pyrophosphatase superfamily YPDSF_3352 IPR003763 CDP-diacylglycerol pyrophosphatase YPDSF_3353 IPR007844 AsmA YPDSF_3354 IPR001633 EAL domain YPDSF_3354 IPR035919 EAL domain superfamily YPDSF_3355 IPR014347 Tautomerase/MIF superfamily YPDSF_3355 IPR004370 4-oxalocrotonate tautomerase YPDSF_3355 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type YPDSF_3356 IPR029056 Ribokinase-like YPDSF_3356 IPR011611 Carbohydrate kinase PfkB YPDSF_3356 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPDSF_3357 IPR007863 Peptidase M16, C-terminal YPDSF_3357 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like YPDSF_3357 IPR011765 Peptidase M16, N-terminal YPDSF_3358 IPR018107 Sodium:dicarboxylate symporter, conserved site YPDSF_3358 IPR001991 Sodium:dicarboxylate symporter YPDSF_3358 IPR023954 C4-dicarboxylate transport protein YPDSF_3358 IPR036458 Sodium:dicarboxylate symporter superfamily YPDSF_3362 IPR009331 Oligogalacturonate-specific porin YPDSF_3363 IPR003660 HAMP domain YPDSF_3363 IPR001633 EAL domain YPDSF_3363 IPR000160 GGDEF domain YPDSF_3363 IPR033419 Gammaproteobacterial periplasmic sensor domain GAPES3 YPDSF_3363 IPR035919 EAL domain superfamily YPDSF_3363 IPR029787 Nucleotide cyclase YPDSF_3364 IPR019834 Glycoside hydrolase, family 8, conserved site YPDSF_3364 IPR008928 Six-hairpin glycosidase superfamily YPDSF_3364 IPR012341 Six-hairpin glycosidase-like superfamily YPDSF_3364 IPR002037 Glycoside hydrolase, family 8 YPDSF_3365 IPR003593 AAA+ ATPase domain YPDSF_3365 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3365 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPDSF_3365 IPR003439 ABC transporter-like YPDSF_3365 IPR017871 ABC transporter, conserved site YPDSF_3366 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPDSF_3366 IPR017871 ABC transporter, conserved site YPDSF_3366 IPR003439 ABC transporter-like YPDSF_3366 IPR003593 AAA+ ATPase domain YPDSF_3366 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3367 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPDSF_3367 IPR035906 MetI-like superfamily YPDSF_3367 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_3368 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_3368 IPR035906 MetI-like superfamily YPDSF_3369 IPR039424 Solute-binding protein family 5 YPDSF_3369 IPR030678 Peptide/nickel binding protein, MppA-type YPDSF_3369 IPR023765 Solute-binding protein family 5, conserved site YPDSF_3369 IPR000914 Solute-binding protein family 5 domain YPDSF_3370 IPR005565 Haemolysin activator HlyB, C-terminal YPDSF_3370 IPR027282 Two partner secretion pathway transporter YPDSF_3370 IPR034746 POTRA domain YPDSF_3370 IPR035251 ShlB, POTRA domain YPDSF_3370 IPR013686 Polypeptide-transport-associated, ShlB-type YPDSF_3371 IPR008619 Filamentous haemagglutinin repeat YPDSF_3371 IPR008638 Filamentous haemagglutinin, N-terminal YPDSF_3371 IPR025157 Hemagglutinin repeat YPDSF_3371 IPR006626 Parallel beta-helix repeat YPDSF_3371 IPR012334 Pectin lyase fold YPDSF_3371 IPR011050 Pectin lyase fold/virulence factor YPDSF_3371 IPR006914 VENN motif-containing domain YPDSF_3371 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPDSF_3372 IPR020846 Major facilitator superfamily domain YPDSF_3372 IPR011701 Major facilitator superfamily YPDSF_3372 IPR036259 MFS transporter superfamily YPDSF_3372 IPR021159 Glycerate/sugar phosphate transporter, conserved site YPDSF_3372 IPR000849 Sugar phosphate transporter YPDSF_3373 IPR003594 Histidine kinase/HSP90-like ATPase YPDSF_3373 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_3373 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain YPDSF_3373 IPR007895 MASE1 YPDSF_3373 IPR005467 Histidine kinase domain YPDSF_3374 IPR011006 CheY-like superfamily YPDSF_3374 IPR001789 Signal transduction response regulator, receiver domain YPDSF_3374 IPR016032 Signal transduction response regulator, C-terminal effector YPDSF_3374 IPR000792 Transcription regulator LuxR, C-terminal YPDSF_3375 IPR000917 Sulfatase, N-terminal YPDSF_3375 IPR012549 Phosphoethanolamine transferase, N-terminal YPDSF_3375 IPR040423 Phosphoethanolamine transferase YPDSF_3375 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPDSF_3376 IPR002611 IstB-like ATP-binding protein YPDSF_3376 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3376 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_3376 IPR001270 ClpA/B family YPDSF_3376 IPR003593 AAA+ ATPase domain YPDSF_3377 IPR036397 Ribonuclease H superfamily YPDSF_3377 IPR012337 Ribonuclease H-like superfamily YPDSF_3377 IPR006120 Resolvase, HTH domain YPDSF_3377 IPR001584 Integrase, catalytic core YPDSF_3377 IPR017894 HTH domain, IS21 transposase-type YPDSF_3378 IPR016181 Acyl-CoA N-acyltransferase YPDSF_3378 IPR000182 GNAT domain YPDSF_3379 IPR006083 Phosphoribulokinase/uridine kinase YPDSF_3379 IPR004566 Pantothenate kinase YPDSF_3379 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3380 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain YPDSF_3380 IPR013196 Helix-turn-helix, type 11 YPDSF_3380 IPR030855 Bifunctional ligase/repressor BirA YPDSF_3380 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_3380 IPR004408 Biotin--acetyl-CoA-carboxylase ligase YPDSF_3380 IPR004409 Biotin operon repressor, helix-turn-helix domain YPDSF_3380 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3380 IPR003142 Biotin protein ligase, C-terminal YPDSF_3380 IPR008988 Transcriptional repressor, C-terminal YPDSF_3381 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase YPDSF_3381 IPR016169 FAD-binding, type PCMH, subdomain 2 YPDSF_3381 IPR006094 FAD linked oxidase, N-terminal YPDSF_3381 IPR016167 FAD-binding, type PCMH, subdomain 1 YPDSF_3381 IPR036318 FAD-binding, type PCMH-like superfamily YPDSF_3381 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily YPDSF_3381 IPR016166 FAD-binding domain, PCMH-type YPDSF_3381 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal YPDSF_3382 IPR029039 Flavoprotein-like superfamily YPDSF_3382 IPR026816 Flavodoxin domain YPDSF_3382 IPR001226 Flavodoxin, conserved site YPDSF_3382 IPR008254 Flavodoxin/nitric oxide synthase YPDSF_3383 IPR003445 Cation transporter YPDSF_3383 IPR004772 TrkH potassium transport family YPDSF_3384 IPR020568 Ribosomal protein S5 domain 2-type fold YPDSF_3384 IPR023582 Impact family YPDSF_3384 IPR015796 Impact family, bacterial/archaeal YPDSF_3384 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site YPDSF_3384 IPR001498 Impact, N-terminal YPDSF_3384 IPR036956 Impact, N-terminal domain superfamily YPDSF_3384 IPR035647 EF-G domain III/V-like YPDSF_3384 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal YPDSF_3385 IPR036005 Creatinase/aminopeptidase-like YPDSF_3385 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPDSF_3385 IPR000994 Peptidase M24 YPDSF_3385 IPR022846 Xaa-Pro dipeptidase YPDSF_3385 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site YPDSF_3386 IPR012799 Fatty oxidation complex, alpha subunit FadB YPDSF_3386 IPR036291 NAD(P)-binding domain superfamily YPDSF_3386 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site YPDSF_3386 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding YPDSF_3386 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal YPDSF_3386 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPDSF_3386 IPR029045 ClpP/crotonase-like domain superfamily YPDSF_3386 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site YPDSF_3386 IPR001753 Enoyl-CoA hydratase/isomerase YPDSF_3387 IPR012805 Acetyl-CoA C-acyltransferase FadA YPDSF_3387 IPR020613 Thiolase, conserved site YPDSF_3387 IPR020617 Thiolase, C-terminal YPDSF_3387 IPR020610 Thiolase, active site YPDSF_3387 IPR020615 Thiolase, acyl-enzyme intermediate active site YPDSF_3387 IPR016039 Thiolase-like YPDSF_3387 IPR002155 Thiolase YPDSF_3387 IPR020616 Thiolase, N-terminal YPDSF_3388 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPDSF_3388 IPR017927 FAD-binding domain, ferredoxin reductase-type YPDSF_3388 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPDSF_3388 IPR017938 Riboflavin synthase-like beta-barrel YPDSF_3388 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPDSF_3389 IPR023677 UbiD decarboxylyase, bacteria YPDSF_3389 IPR002830 UbiD decarboxylyase family YPDSF_3390 IPR006645 NusG, N-terminal YPDSF_3390 IPR010215 Transcription antitermination protein RfaH YPDSF_3390 IPR036735 NusG, N-terminal domain superfamily YPDSF_3391 IPR030656 Delta-aminolevulinic acid dehydratase, active site YPDSF_3391 IPR001731 Delta-aminolevulinic acid dehydratase YPDSF_3391 IPR013785 Aldolase-type TIM barrel YPDSF_3392 IPR024918 3'-5' ssDNA/RNA exonuclease TatD YPDSF_3392 IPR032466 Metal-dependent hydrolase YPDSF_3392 IPR018228 Deoxyribonuclease, TatD-related, conserved site YPDSF_3392 IPR001130 TatD family YPDSF_3393 IPR019820 Sec-independent periplasmic protein translocase, conserved site YPDSF_3393 IPR002033 Sec-independent periplasmic protein translocase TatC YPDSF_3394 IPR018448 Twin-arginine translocation protein TatB YPDSF_3395 IPR006312 Sec-independent protein translocase protein TatA/E YPDSF_3395 IPR003369 Sec-independent protein translocase protein TatA/B/E YPDSF_3396 IPR004147 UbiB domain YPDSF_3396 IPR010232 Probable protein kinase UbiB YPDSF_3396 IPR011009 Protein kinase-like domain superfamily YPDSF_3397 IPR003033 SCP2 sterol-binding domain YPDSF_3397 IPR036527 SCP2 sterol-binding domain superfamily YPDSF_3397 IPR038989 Ubiquinone biosynthesis protein UbiJ YPDSF_3398 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_3398 IPR004033 UbiE/COQ5 methyltransferase YPDSF_3398 IPR023576 UbiE/COQ5 methyltransferase, conserved site YPDSF_3399 IPR003798 DNA recombination RmuC YPDSF_3400 IPR032816 SNARE associated Golgi protein YPDSF_3400 IPR032818 DedA family YPDSF_3401 IPR025299 CstA, C-terminal domain YPDSF_3401 IPR003706 CstA, N-terminal domain YPDSF_3403 IPR018016 Nucleoside phosphorylase, conserved site YPDSF_3403 IPR000845 Nucleoside phosphorylase domain YPDSF_3403 IPR035994 Nucleoside phosphorylase superfamily YPDSF_3403 IPR010058 Uridine phosphorylase YPDSF_3404 IPR002925 Dienelactone hydrolase YPDSF_3404 IPR029058 Alpha/Beta hydrolase fold YPDSF_3405 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal YPDSF_3405 IPR038071 UROD/MetE-like superfamily YPDSF_3405 IPR006276 Cobalamin-independent methionine synthase YPDSF_3405 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal YPDSF_3406 IPR005119 LysR, substrate-binding YPDSF_3406 IPR037406 HTH-type transcriptional regulator MetR, PBP2 domain YPDSF_3406 IPR000847 Transcription regulator HTH, LysR YPDSF_3406 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3406 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_3407 IPR000620 EamA domain YPDSF_3407 IPR004779 Carboxylate/Amino Acid/Amine Transporter YPDSF_3408 IPR004776 Membrane transport protein YPDSF_3409 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily YPDSF_3409 IPR030395 Glycerophosphodiester phosphodiesterase domain YPDSF_3410 IPR003439 ABC transporter-like YPDSF_3410 IPR017871 ABC transporter, conserved site YPDSF_3410 IPR008995 Molybdate/tungstate binding, C-terminal YPDSF_3410 IPR040582 MalK, OB fold domain YPDSF_3410 IPR003593 AAA+ ATPase domain YPDSF_3410 IPR017922 sn-Glycerol-3-phosphate import ATP-binding protein UgpC YPDSF_3410 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3411 IPR035906 MetI-like superfamily YPDSF_3411 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_3411 IPR030165 sn-Glycerol-3-phosphate transport system permease protein UgpE YPDSF_3412 IPR035906 MetI-like superfamily YPDSF_3412 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_3413 IPR006059 Bacterial extracellular solute-binding protein YPDSF_3413 IPR006061 Solute-binding family 1, conserved site YPDSF_3421 IPR003593 AAA+ ATPase domain YPDSF_3421 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein YPDSF_3421 IPR003439 ABC transporter-like YPDSF_3421 IPR017871 ABC transporter, conserved site YPDSF_3421 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3422 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3422 IPR003439 ABC transporter-like YPDSF_3422 IPR003593 AAA+ ATPase domain YPDSF_3422 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal YPDSF_3422 IPR017871 ABC transporter, conserved site YPDSF_3423 IPR001851 ABC transporter, permease YPDSF_3423 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal YPDSF_3424 IPR001851 ABC transporter, permease YPDSF_3425 IPR028082 Periplasmic binding protein-like I YPDSF_3425 IPR000709 Leu/Ile/Val-binding protein YPDSF_3425 IPR028081 Leucine-binding protein domain YPDSF_3426 IPR040448 PanZ, acetyltransferase (GNAT) domain YPDSF_3426 IPR032900 PanD regulatory factor PanZ YPDSF_3426 IPR000182 GNAT domain YPDSF_3426 IPR016181 Acyl-CoA N-acyltransferase YPDSF_3428 IPR009042 RNA polymerase sigma-70 region 1.2 YPDSF_3428 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3428 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria YPDSF_3428 IPR013324 RNA polymerase sigma factor, region 3/4-like YPDSF_3428 IPR014284 RNA polymerase sigma-70 like domain YPDSF_3428 IPR007630 RNA polymerase sigma-70 region 4 YPDSF_3428 IPR013325 RNA polymerase sigma factor, region 2 YPDSF_3428 IPR007627 RNA polymerase sigma-70 region 2 YPDSF_3428 IPR000943 RNA polymerase sigma-70 YPDSF_3429 IPR040690 FtsX, extracellular domain YPDSF_3429 IPR004513 Cell division protein FtsX YPDSF_3429 IPR003838 ABC transporter permease protein domain YPDSF_3430 IPR003593 AAA+ ATPase domain YPDSF_3430 IPR017871 ABC transporter, conserved site YPDSF_3430 IPR005286 Cell division protein FtsE, ATP-binding YPDSF_3430 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3430 IPR003439 ABC transporter-like YPDSF_3431 IPR003593 AAA+ ATPase domain YPDSF_3431 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain YPDSF_3431 IPR036225 SRP/SRP receptor, N-terminal YPDSF_3431 IPR004390 Signal-recognition particle receptor FtsY YPDSF_3431 IPR013822 Signal recognition particle SRP54, helical bundle YPDSF_3431 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3431 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily YPDSF_3431 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain YPDSF_3431 IPR036225 SRP/SRP receptor, N-terminal YPDSF_3431 IPR004390 Signal-recognition particle receptor FtsY YPDSF_3431 IPR013822 Signal recognition particle SRP54, helical bundle YPDSF_3431 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3431 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily YPDSF_3431 IPR003593 AAA+ ATPase domain YPDSF_3432 IPR004398 RNA methyltransferase, RsmD YPDSF_3432 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPDSF_3432 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_3433 IPR009525 Protein of unknown function DUF1145 YPDSF_3436 IPR012506 YhhN-like YPDSF_3437 IPR018303 P-type ATPase, phosphorylation site YPDSF_3437 IPR001757 P-type ATPase YPDSF_3437 IPR027256 P-type ATPase, subfamily IB YPDSF_3437 IPR036163 Heavy metal-associated domain superfamily YPDSF_3437 IPR006121 Heavy metal-associated domain, HMA YPDSF_3437 IPR017969 Heavy-metal-associated, conserved site YPDSF_3437 IPR023214 HAD superfamily YPDSF_3437 IPR036412 HAD-like superfamily YPDSF_3437 IPR023299 P-type ATPase, cytoplasmic domain N YPDSF_3437 IPR008250 P-type ATPase, A domain superfamily YPDSF_3437 IPR023298 P-type ATPase, transmembrane domain superfamily YPDSF_3438 IPR036868 TusA-like domain superfamily YPDSF_3438 IPR001455 TusA-like domain YPDSF_3438 IPR022931 Sulfur carrier protein TusA YPDSF_3439 IPR003744 Queuosine precursor transporter YPDSF_3440 IPR014894 Protein DcrB YPDSF_3440 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich YPDSF_3441 IPR017753 Glycerol-3-phosphate dehydrogenase, GlpC subunit YPDSF_3441 IPR004017 Cysteine-rich domain YPDSF_3441 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPDSF_3441 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPDSF_3441 IPR009051 Alpha-helical ferredoxin YPDSF_3442 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit YPDSF_3442 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_3442 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain YPDSF_3443 IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit YPDSF_3443 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_3443 IPR006076 FAD dependent oxidoreductase YPDSF_3443 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily YPDSF_3443 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase YPDSF_3443 IPR007419 BFD-like [2Fe-2S]-binding domain YPDSF_3444 IPR030395 Glycerophosphodiester phosphodiesterase domain YPDSF_3444 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily YPDSF_3446 IPR000150 Cof family YPDSF_3446 IPR036412 HAD-like superfamily YPDSF_3446 IPR006379 HAD-superfamily hydrolase, subfamily IIB YPDSF_3446 IPR023214 HAD superfamily YPDSF_3447 IPR022742 Serine aminopeptidase, S33 YPDSF_3447 IPR029058 Alpha/Beta hydrolase fold YPDSF_3448 IPR004778 Homoserine/Threonine efflux protein YPDSF_3448 IPR001123 Amino acid exporter protein, LeuE-type YPDSF_3449 IPR004778 Homoserine/Threonine efflux protein YPDSF_3449 IPR001123 Amino acid exporter protein, LeuE-type YPDSF_3450 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain YPDSF_3450 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3450 IPR002121 HRDC domain YPDSF_3450 IPR010997 HRDC-like superfamily YPDSF_3450 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPDSF_3450 IPR018982 RQC domain YPDSF_3450 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial YPDSF_3450 IPR004589 DNA helicase, ATP-dependent, RecQ type YPDSF_3450 IPR011545 DEAD/DEAH box helicase domain YPDSF_3450 IPR001650 Helicase, C-terminal YPDSF_3450 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3451 IPR036541 Phospholipase A1 superfamily YPDSF_3451 IPR003187 Phospholipase A1 YPDSF_3452 IPR006683 Thioesterase domain YPDSF_3452 IPR003736 Phenylacetic acid degradation-related domain YPDSF_3452 IPR029069 HotDog domain superfamily YPDSF_3453 IPR000620 EamA domain YPDSF_3453 IPR004626 RarD protein YPDSF_3454 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB YPDSF_3454 IPR004488 Magnesium/cobalt transport protein CorA YPDSF_3455 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPDSF_3455 IPR009215 TIM-barrel domain, IGPS-like YPDSF_3455 IPR013785 Aldolase-type TIM barrel YPDSF_3456 IPR008322 Uncharacterised protein family UPF0261 YPDSF_3458 IPR000212 DNA helicase, UvrD/REP type YPDSF_3458 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3458 IPR034739 UvrD/AddA helicase, N-terminal YPDSF_3458 IPR014017 UvrD-like DNA helicase, C-terminal YPDSF_3458 IPR005753 DNA helicase, ATP-dependent, UvrD type YPDSF_3458 IPR013986 DExx box DNA helicase domain superfamily YPDSF_3458 IPR014016 UvrD-like helicase, ATP-binding domain YPDSF_3459 IPR023214 HAD superfamily YPDSF_3459 IPR041492 Haloacid dehalogenase-like hydrolase YPDSF_3459 IPR006439 HAD hydrolase, subfamily IA YPDSF_3459 IPR036412 HAD-like superfamily YPDSF_3460 IPR023009 Tyrosine recombinase XerC/XerD YPDSF_3460 IPR011931 Tyrosine recombinase XerC YPDSF_3460 IPR004107 Integrase, SAM-like, N-terminal YPDSF_3460 IPR010998 Integrase/recombinase, N-terminal YPDSF_3460 IPR002104 Integrase, catalytic domain YPDSF_3460 IPR013762 Integrase-like, catalytic domain superfamily YPDSF_3460 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPDSF_3461 IPR007435 Protein of unknown function DUF484 YPDSF_3461 IPR029016 GAF-like domain superfamily YPDSF_3462 IPR001653 Diaminopimelate epimerase, DapF YPDSF_3462 IPR018510 Diaminopimelate epimerase, active site YPDSF_3463 IPR032831 Prokaryotic lipoprotein-attachment site YPDSF_3464 IPR020895 Frataxin conserved site YPDSF_3464 IPR036524 Frataxin/CyaY superfamily YPDSF_3464 IPR002908 Frataxin/CyaY YPDSF_3465 IPR000274 Adenylate cyclase, class-I YPDSF_3465 IPR024686 Adenylate cyclase class-I, conserved site YPDSF_3465 IPR024685 Adenylate cyclase class-I, N-terminal domain YPDSF_3467 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site YPDSF_3467 IPR022417 Porphobilinogen deaminase, N-terminal YPDSF_3467 IPR022418 Porphobilinogen deaminase, C-terminal YPDSF_3467 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily YPDSF_3467 IPR000860 Porphobilinogen deaminase YPDSF_3468 IPR039793 Uroporphyrinogen-III synthase YPDSF_3468 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase YPDSF_3468 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily YPDSF_3469 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX YPDSF_3470 IPR011990 Tetratricopeptide-like helical domain superfamily YPDSF_3470 IPR013026 Tetratricopeptide repeat-containing domain YPDSF_3470 IPR010817 HemY, N-terminal YPDSF_3470 IPR005254 Heme biosynthesis-associated TPR protein YPDSF_3470 IPR013105 Tetratricopeptide repeat 2 YPDSF_3470 IPR019734 Tetratricopeptide repeat YPDSF_3472 IPR004840 Amino acid permease, conserved site YPDSF_3472 IPR004841 Amino acid permease/ SLC12A domain YPDSF_3473 IPR004629 Glycosyl transferase WecB/TagA/CpsF YPDSF_3473 IPR023085 UDP-N-acetyl-D-mannosaminuronic acid transferase YPDSF_3474 IPR010691 Probable ECA polymerase WzyE YPDSF_3475 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase YPDSF_3476 IPR032896 Lipid III flippase WzxE YPDSF_3476 IPR002797 Polysaccharide biosynthesis protein YPDSF_3477 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_3477 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YPDSF_3477 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_3477 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_3477 IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like YPDSF_3477 IPR032894 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE YPDSF_3478 IPR002110 Ankyrin repeat YPDSF_3478 IPR020683 Ankyrin repeat-containing domain YPDSF_3478 IPR000182 GNAT domain YPDSF_3478 IPR012752 dTDP-fucosamine acetyltransferase WecD YPDSF_3478 IPR016181 Acyl-CoA N-acyltransferase YPDSF_3479 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form YPDSF_3479 IPR029044 Nucleotide-diphospho-sugar transferases YPDSF_3479 IPR005835 Nucleotidyl transferase domain YPDSF_3480 IPR005888 dTDP-glucose 4,6-dehydratase YPDSF_3480 IPR016040 NAD(P)-binding domain YPDSF_3480 IPR036291 NAD(P)-binding domain superfamily YPDSF_3481 IPR036291 NAD(P)-binding domain superfamily YPDSF_3481 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPDSF_3481 IPR017476 UDP-glucose/GDP-mannose dehydrogenase YPDSF_3481 IPR032891 UDP-N-acetyl-D-mannosamine dehydrogenase WecC YPDSF_3481 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal YPDSF_3481 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase YPDSF_3481 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily YPDSF_3481 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal YPDSF_3481 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation YPDSF_3482 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like YPDSF_3482 IPR032892 UDP-N-acetylglucosamine 2-epimerase WecB YPDSF_3482 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain YPDSF_3483 IPR032895 ECA polysaccharide chain length modulation protein WzzE YPDSF_3483 IPR003856 Polysaccharide chain length determinant N-terminal domain YPDSF_3484 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase YPDSF_3484 IPR000715 Glycosyl transferase, family 4 YPDSF_3485 IPR004665 Transcription termination factor Rho YPDSF_3485 IPR011113 Rho termination factor, RNA-binding domain YPDSF_3485 IPR036269 Rho termination factor, N-terminal domain superfamily YPDSF_3485 IPR011112 Rho termination factor, N-terminal YPDSF_3485 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3485 IPR041703 Transcription termination factor Rho, ATP binding domain YPDSF_3485 IPR011129 Cold shock domain YPDSF_3485 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPDSF_3485 IPR003593 AAA+ ATPase domain YPDSF_3485 IPR012340 Nucleic acid-binding, OB-fold YPDSF_3486 IPR005746 Thioredoxin YPDSF_3486 IPR036249 Thioredoxin-like superfamily YPDSF_3486 IPR017937 Thioredoxin, conserved site YPDSF_3486 IPR013766 Thioredoxin domain YPDSF_3487 IPR011545 DEAD/DEAH box helicase domain YPDSF_3487 IPR014014 RNA helicase, DEAD-box type, Q motif YPDSF_3487 IPR023554 ATP-dependent RNA helicase RhlB type YPDSF_3487 IPR001650 Helicase, C-terminal YPDSF_3487 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3487 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPDSF_3487 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPDSF_3488 IPR030673 Pyrophosphatase, GppA/Ppx-type YPDSF_3488 IPR023709 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase YPDSF_3488 IPR022371 Exopolyphosphatase YPDSF_3488 IPR003695 Ppx/GppA phosphatase YPDSF_3489 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3489 IPR005752 ATP-dependent DNA helicase Rep YPDSF_3489 IPR000212 DNA helicase, UvrD/REP type YPDSF_3489 IPR014016 UvrD-like helicase, ATP-binding domain YPDSF_3489 IPR034739 UvrD/AddA helicase, N-terminal YPDSF_3489 IPR014017 UvrD-like DNA helicase, C-terminal YPDSF_3489 IPR013986 DExx box DNA helicase domain superfamily YPDSF_3490 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site YPDSF_3490 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type YPDSF_3493 IPR013783 Immunoglobulin-like fold YPDSF_3493 IPR001829 Pili assembly chaperone, bacterial YPDSF_3493 IPR008962 PapD-like superfamily YPDSF_3493 IPR016147 Pili assembly chaperone, N-terminal YPDSF_3493 IPR018046 Pili assembly chaperone, conserved site YPDSF_3493 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPDSF_3493 IPR016148 Pili assembly chaperone, C-terminal YPDSF_3494 IPR018030 Fimbrial membrane usher, conserved site YPDSF_3494 IPR025949 PapC-like, C-terminal domain YPDSF_3494 IPR025885 PapC, N-terminal domain YPDSF_3494 IPR037224 PapC, N-terminal domain superfamily YPDSF_3494 IPR000015 Outer membrane usher protein YPDSF_3494 IPR042186 Outer membrane usher protein FimD, plug domain YPDSF_3496 IPR008962 PapD-like superfamily YPDSF_3496 IPR013783 Immunoglobulin-like fold YPDSF_3496 IPR016147 Pili assembly chaperone, N-terminal YPDSF_3496 IPR018046 Pili assembly chaperone, conserved site YPDSF_3496 IPR016148 Pili assembly chaperone, C-terminal YPDSF_3496 IPR001829 Pili assembly chaperone, bacterial YPDSF_3496 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPDSF_3501 IPR000506 Ketol-acid reductoisomerase, C-terminal YPDSF_3501 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPDSF_3501 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPDSF_3501 IPR013023 Ketol-acid reductoisomerase YPDSF_3501 IPR013116 Ketol-acid reductoisomerase, N-terminal YPDSF_3501 IPR036291 NAD(P)-binding domain superfamily YPDSF_3502 IPR000847 Transcription regulator HTH, LysR YPDSF_3502 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3502 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_3502 IPR037404 HTH-type transcriptional activator IlvY, PBP2 domain YPDSF_3502 IPR005119 LysR, substrate-binding YPDSF_3509 IPR001926 Pyridoxal-phosphate dependent enzyme YPDSF_3509 IPR038110 Threonine dehydratase, ACT-like domain superfamily YPDSF_3509 IPR001721 Threonine dehydratase, ACT-like domain YPDSF_3509 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site YPDSF_3509 IPR005787 Threonine dehydratase, biosynthetic YPDSF_3509 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPDSF_3510 IPR042096 Dihydroxy-acid dehydratase, C-terminal YPDSF_3510 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase YPDSF_3510 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site YPDSF_3510 IPR037237 IlvD/EDD, N-terminal domain YPDSF_3510 IPR004404 Dihydroxy-acid dehydratase YPDSF_3511 IPR001544 Aminotransferase class IV YPDSF_3511 IPR018300 Aminotransferase, class IV, conserved site YPDSF_3511 IPR036038 Aminotransferase-like, PLP-dependent enzymes YPDSF_3511 IPR005785 Branched-chain amino acid aminotransferase I YPDSF_3511 IPR033939 Branched-chain aminotransferase YPDSF_3512 IPR002912 ACT domain YPDSF_3513 IPR012846 Acetolactate synthase, large subunit, biosynthetic YPDSF_3513 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPDSF_3513 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPDSF_3513 IPR000399 TPP-binding enzyme, conserved site YPDSF_3513 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPDSF_3513 IPR012000 Thiamine pyrophosphate enzyme, central domain YPDSF_3513 IPR029061 Thiamin diphosphate-binding fold YPDSF_3513 IPR039368 Acetolactate synthase large subunit, TPP binding domain YPDSF_3514 IPR025158 Mg chelatase-related protein, C-terminal domain YPDSF_3514 IPR020568 Ribosomal protein S5 domain 2-type fold YPDSF_3514 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPDSF_3514 IPR004482 Mg chelatase-related protein YPDSF_3514 IPR000523 Magnesium chelatase ChlI domain YPDSF_3514 IPR003593 AAA+ ATPase domain YPDSF_3514 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3515 IPR007335 Protein of unknown function DUF413 YPDSF_3516 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_3516 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3516 IPR000847 Transcription regulator HTH, LysR YPDSF_3516 IPR020890 Transcription regulator HTH, HdfR YPDSF_3516 IPR005119 LysR, substrate-binding YPDSF_3517 IPR001851 ABC transporter, permease YPDSF_3518 IPR001851 ABC transporter, permease YPDSF_3519 IPR003439 ABC transporter-like YPDSF_3519 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3519 IPR003593 AAA+ ATPase domain YPDSF_3519 IPR017871 ABC transporter, conserved site YPDSF_3520 IPR033893 ABC transporter periplasmic-binding protein YtfQ YPDSF_3520 IPR025997 Periplasmic binding protein YPDSF_3520 IPR028082 Periplasmic binding protein-like I YPDSF_3521 IPR015942 Asp/Glu/hydantoin racemase YPDSF_3521 IPR033134 Asp/Glu racemase, active site 2 YPDSF_3521 IPR001920 Asp/Glu racemase YPDSF_3521 IPR018187 Asp/Glu racemase, active site 1 YPDSF_3521 IPR004391 Glutamate racemase YPDSF_3522 IPR039426 Vitamin B12 transporter BtuB-like YPDSF_3522 IPR037066 TonB-dependent receptor, plug domain superfamily YPDSF_3522 IPR000531 TonB-dependent receptor-like, beta-barrel YPDSF_3522 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPDSF_3522 IPR010917 TonB-dependent receptor, conserved site YPDSF_3522 IPR012910 TonB-dependent receptor, plug domain YPDSF_3522 IPR010101 TonB-dependent vitamin B12 transporter BtuB YPDSF_3523 IPR030390 RNA methyltransferase TrmA, active site YPDSF_3523 IPR030391 RNA methyltransferase TrmA, conserved site YPDSF_3523 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_3523 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA YPDSF_3523 IPR010280 (Uracil-5)-methyltransferase family YPDSF_3524 IPR009867 Protein of unknown function DUF1422 YPDSF_3525 IPR023764 Transcriptional repressor HTH, FabR YPDSF_3525 IPR001647 DNA-binding HTH domain, TetR-type YPDSF_3525 IPR009057 Homeobox-like domain superfamily YPDSF_3526 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I YPDSF_3526 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily YPDSF_3526 IPR023753 FAD/NAD(P)-binding domain YPDSF_3526 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_3526 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPDSF_3526 IPR022962 Soluble pyridine nucleotide transhydrogenase YPDSF_3527 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_3527 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3527 IPR000847 Transcription regulator HTH, LysR YPDSF_3527 IPR005119 LysR, substrate-binding YPDSF_3528 IPR014025 Glutaredoxin subgroup YPDSF_3528 IPR011767 Glutaredoxin active site YPDSF_3528 IPR037944 Peroxiredoxin-5-like YPDSF_3528 IPR013740 Redoxin YPDSF_3528 IPR002109 Glutaredoxin YPDSF_3528 IPR036249 Thioredoxin-like superfamily YPDSF_3528 IPR011906 Glutaredoxin domain YPDSF_3529 IPR023753 FAD/NAD(P)-binding domain YPDSF_3529 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_3529 IPR006258 Dihydrolipoamide dehydrogenase YPDSF_3529 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I YPDSF_3529 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily YPDSF_3529 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site YPDSF_3529 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPDSF_3530 IPR006260 TonB/TolA, C-terminal YPDSF_3530 IPR037682 TonB, C-terminal YPDSF_3531 IPR006144 Secretion protein HlyD, conserved site YPDSF_3531 IPR010129 Type I secretion membrane fusion protein, HlyD family YPDSF_3532 IPR010128 ATPase, type I secretion system, PrtD YPDSF_3532 IPR003593 AAA+ ATPase domain YPDSF_3532 IPR011527 ABC transporter type 1, transmembrane domain YPDSF_3532 IPR003439 ABC transporter-like YPDSF_3532 IPR017871 ABC transporter, conserved site YPDSF_3532 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPDSF_3532 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3534 IPR039426 Vitamin B12 transporter BtuB-like YPDSF_3534 IPR037066 TonB-dependent receptor, plug domain superfamily YPDSF_3534 IPR011276 TonB-dependent haem/haemoglobin receptor YPDSF_3534 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor YPDSF_3534 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPDSF_3534 IPR012910 TonB-dependent receptor, plug domain YPDSF_3534 IPR000531 TonB-dependent receptor-like, beta-barrel YPDSF_3535 IPR024083 Fumarase/histidase, N-terminal YPDSF_3535 IPR009049 Argininosuccinate lyase YPDSF_3535 IPR029419 Argininosuccinate lyase, C-terminal YPDSF_3535 IPR008948 L-Aspartase-like YPDSF_3535 IPR022761 Fumarate lyase, N-terminal YPDSF_3535 IPR000362 Fumarate lyase family YPDSF_3535 IPR020557 Fumarate lyase, conserved site YPDSF_3536 IPR041731 N-Acetyl-L-glutamate kinase, noncyclic YPDSF_3536 IPR004662 Acetylglutamate kinase family YPDSF_3536 IPR036393 Acetylglutamate kinase-like superfamily YPDSF_3536 IPR001048 Aspartate/glutamate/uridylate kinase YPDSF_3536 IPR037528 Acetylglutamate kinase ArgB YPDSF_3537 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site YPDSF_3537 IPR000534 Semialdehyde dehydrogenase, NAD-binding YPDSF_3537 IPR036291 NAD(P)-binding domain superfamily YPDSF_3537 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 YPDSF_3537 IPR012280 Semialdehyde dehydrogenase, dimerisation domain YPDSF_3538 IPR011650 Peptidase M20, dimerisation domain YPDSF_3538 IPR002933 Peptidase M20 YPDSF_3538 IPR036264 Bacterial exopeptidase dimerisation domain YPDSF_3538 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YPDSF_3538 IPR010169 Acetylornithine deacetylase ArgE YPDSF_3539 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type YPDSF_3539 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily YPDSF_3539 IPR033129 Phosphoenolpyruvate carboxylase, His active site YPDSF_3539 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site YPDSF_3539 IPR021135 Phosphoenolpyruvate carboxylase YPDSF_3541 IPR025948 HTH-like domain YPDSF_3541 IPR038965 Transposase InsF-like YPDSF_3541 IPR001584 Integrase, catalytic core YPDSF_3541 IPR012337 Ribonuclease H-like superfamily YPDSF_3541 IPR036397 Ribonuclease H superfamily YPDSF_3542 IPR009068 S15/NS1, RNA-binding YPDSF_3542 IPR005290 Ribosomal protein S15, bacterial-type YPDSF_3542 IPR000589 Ribosomal protein S15 YPDSF_3543 IPR020103 Pseudouridine synthase, catalytic domain superfamily YPDSF_3543 IPR002501 Pseudouridine synthase II, N-terminal YPDSF_3543 IPR015947 PUA-like superfamily YPDSF_3543 IPR036974 PUA domain superfamily YPDSF_3543 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal YPDSF_3543 IPR032819 tRNA pseudouridylate synthase B, C-terminal YPDSF_3543 IPR014780 tRNA pseudouridine synthase II, TruB YPDSF_3544 IPR015946 K homology domain-like, alpha/beta YPDSF_3544 IPR000238 Ribosome-binding factor A YPDSF_3544 IPR023799 Ribosome-binding factor A domain superfamily YPDSF_3544 IPR020053 Ribosome-binding factor A, conserved site YPDSF_3545 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3545 IPR006847 Translation initiation factor IF-2, N-terminal YPDSF_3545 IPR013575 Initiation factor 2 associated domain, bacterial YPDSF_3545 IPR004161 Translation elongation factor EFTu-like, domain 2 YPDSF_3545 IPR036925 Translation initiation factor IF-2, domain 3 superfamily YPDSF_3545 IPR009061 Putative DNA-binding domain superfamily YPDSF_3545 IPR000795 Transcription factor, GTP-binding domain YPDSF_3545 IPR005225 Small GTP-binding protein domain YPDSF_3545 IPR000178 Translation initiation factor aIF-2, bacterial-like YPDSF_3545 IPR015760 Translation initiation factor IF- 2 YPDSF_3545 IPR009000 Translation protein, beta-barrel domain superfamily YPDSF_3545 IPR023115 Translation initiation factor IF- 2, domain 3 YPDSF_3546 IPR015946 K homology domain-like, alpha/beta YPDSF_3546 IPR036555 NusA, N-terminal domain superfamily YPDSF_3546 IPR013735 Transcription factor NusA, N-terminal YPDSF_3546 IPR025249 KH domain, NusA-like YPDSF_3546 IPR003029 S1 domain YPDSF_3546 IPR022967 RNA-binding domain, S1 YPDSF_3546 IPR009019 K homology domain superfamily, prokaryotic type YPDSF_3546 IPR012340 Nucleic acid-binding, OB-fold YPDSF_3546 IPR030842 Transcription termination/antitermination protein NusA, bacterial YPDSF_3546 IPR010213 Transcription termination factor NusA YPDSF_3546 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical YPDSF_3546 IPR010214 Transcription termination factor NusA, C-terminal duplication YPDSF_3547 IPR035956 RimP, N-terminal domain superfamily YPDSF_3547 IPR028989 Ribosome maturation factor RimP, N-terminal YPDSF_3547 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily YPDSF_3547 IPR028998 Ribosome maturation factor RimP, C-terminal YPDSF_3547 IPR003728 Ribosome maturation factor RimP YPDSF_3548 IPR004692 Preprotein translocase SecG subunit YPDSF_3549 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YPDSF_3549 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YPDSF_3549 IPR006352 Phosphoglucosamine mutase, bacterial type YPDSF_3549 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YPDSF_3549 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YPDSF_3549 IPR005843 Alpha-D-phosphohexomutase, C-terminal YPDSF_3549 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily YPDSF_3549 IPR016066 Alpha-D-phosphohexomutase, conserved site YPDSF_3549 IPR005841 Alpha-D-phosphohexomutase superfamily YPDSF_3550 IPR006390 Dihydropteroate synthase YPDSF_3550 IPR011005 Dihydropteroate synthase-like YPDSF_3550 IPR000489 Pterin-binding domain YPDSF_3551 IPR005936 Peptidase, FtsH YPDSF_3551 IPR011546 Peptidase M41, FtsH extracellular YPDSF_3551 IPR003960 ATPase, AAA-type, conserved site YPDSF_3551 IPR003959 ATPase, AAA-type, core YPDSF_3551 IPR037219 Peptidase M41-like YPDSF_3551 IPR041569 AAA ATPase, AAA+ lid domain YPDSF_3551 IPR003593 AAA+ ATPase domain YPDSF_3551 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3551 IPR000642 Peptidase M41 YPDSF_3552 IPR002877 Ribosomal RNA methyltransferase FtsJ domain YPDSF_3552 IPR015507 Ribosomal RNA large subunit methyltransferase E YPDSF_3552 IPR004512 Ribosomal RNA methyltransferase E, gammaproteobacteria YPDSF_3552 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_3553 IPR001890 RNA-binding, CRM domain YPDSF_3553 IPR017924 RNA-binding protein YhbY YPDSF_3553 IPR035920 YhbY-like superfamily YPDSF_3554 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily YPDSF_3554 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily YPDSF_3554 IPR018151 Transcription elongation factor, GreA/GreB, conserved site YPDSF_3554 IPR006359 Transcription elongation factor GreA YPDSF_3554 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal YPDSF_3554 IPR028624 Transcription elongation factor GreA/GreB YPDSF_3554 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal YPDSF_3554 IPR023459 Transcription elongation factor GreA/GreB family YPDSF_3555 IPR012338 Beta-lactamase/transpeptidase-like YPDSF_3555 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C YPDSF_3556 IPR001789 Signal transduction response regulator, receiver domain YPDSF_3556 IPR001867 OmpR/PhoB-type DNA-binding domain YPDSF_3556 IPR039420 Transcriptional regulatory protein WalR-like YPDSF_3556 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3556 IPR011006 CheY-like superfamily YPDSF_3557 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPDSF_3557 IPR005467 Histidine kinase domain YPDSF_3557 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_3557 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPDSF_3557 IPR003594 Histidine kinase/HSP90-like ATPase YPDSF_3557 IPR003660 HAMP domain YPDSF_3557 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPDSF_3558 IPR035101 GTP-binding protein, Obg-type YPDSF_3558 IPR031167 OBG-type guanine nucleotide-binding (G) domain YPDSF_3558 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3558 IPR006073 GTP binding domain YPDSF_3558 IPR006169 GTP1/OBG domain YPDSF_3558 IPR036726 GTP1/OBG domain superfamily YPDSF_3558 IPR014100 GTP-binding protein Obg/CgtA YPDSF_3558 IPR006074 GTP1/OBG, conserved site YPDSF_3559 IPR000620 EamA domain YPDSF_3560 IPR001684 Ribosomal protein L27 YPDSF_3560 IPR018261 Ribosomal protein L27, conserved site YPDSF_3561 IPR018258 Ribosomal protein L21, conserved site YPDSF_3561 IPR036164 L21-like superfamily YPDSF_3561 IPR028909 Ribosomal protein L21-like YPDSF_3561 IPR001787 Ribosomal protein L21 YPDSF_3562 IPR033749 Polyprenyl synthetase, conserved site YPDSF_3562 IPR000092 Polyprenyl synthetase YPDSF_3562 IPR008949 Isoprenoid synthase domain superfamily YPDSF_3564 IPR038722 Ner, winged helix-turn-helix DNA-binding domain YPDSF_3564 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPDSF_3565 IPR023958 Malate dehydrogenase, type 1, bacterial YPDSF_3565 IPR001557 L-lactate/malate dehydrogenase YPDSF_3565 IPR010097 Malate dehydrogenase, type 1 YPDSF_3565 IPR001236 Lactate/malate dehydrogenase, N-terminal YPDSF_3565 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal YPDSF_3565 IPR022383 Lactate/malate dehydrogenase, C-terminal YPDSF_3565 IPR001252 Malate dehydrogenase, active site YPDSF_3565 IPR036291 NAD(P)-binding domain superfamily YPDSF_3566 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_3566 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3566 IPR001669 Arginine repressor YPDSF_3566 IPR020899 Arginine repressor, C-terminal YPDSF_3566 IPR020900 Arginine repressor, DNA-binding domain YPDSF_3566 IPR036251 Arginine repressor, C-terminal domain superfamily YPDSF_3568 IPR013221 Mur ligase, central YPDSF_3568 IPR004101 Mur ligase, C-terminal YPDSF_3568 IPR000713 Mur ligase, N-terminal catalytic domain YPDSF_3568 IPR005757 Murein peptide ligase YPDSF_3568 IPR036565 Mur-like, catalytic domain superfamily YPDSF_3568 IPR036615 Mur ligase, C-terminal domain superfamily YPDSF_3569 IPR020548 Fructose-1,6-bisphosphatase, active site YPDSF_3569 IPR000146 Fructose-1,6-bisphosphatase class 1 YPDSF_3569 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal YPDSF_3569 IPR028343 Fructose-1,6-bisphosphatase YPDSF_3570 IPR036649 Inorganic pyrophosphatase superfamily YPDSF_3570 IPR008162 Inorganic pyrophosphatase YPDSF_3571 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like YPDSF_3571 IPR013024 Gamma-glutamyl cyclotransferase-like YPDSF_3571 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily YPDSF_3571 IPR039126 Gamma-glutamylaminecyclotransferase YPDSF_3572 IPR007452 Translocation and assembly module TamB YPDSF_3573 IPR010827 POTRA domain, BamA/TamA-like YPDSF_3573 IPR000184 Bacterial surface antigen (D15) YPDSF_3573 IPR039910 Surface antigen D15-like YPDSF_3573 IPR034746 POTRA domain YPDSF_3573 IPR035243 TamA, POTRA domain 1 YPDSF_3574 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily YPDSF_3574 IPR002569 Peptide methionine sulphoxide reductase MsrA YPDSF_3575 IPR002550 CNNM, transmembrane domain YPDSF_3575 IPR036318 FAD-binding, type PCMH-like superfamily YPDSF_3575 IPR016169 FAD-binding, type PCMH, subdomain 2 YPDSF_3575 IPR005170 Transporter-associated domain YPDSF_3575 IPR000644 CBS domain YPDSF_3576 IPR009491 Protein of unknown function DUF1107 YPDSF_3577 IPR006513 Conserved hypothetical protein CHP01626, YtfJ YPDSF_3578 IPR020550 Inositol monophosphatase, conserved site YPDSF_3578 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ YPDSF_3578 IPR020583 Inositol monophosphatase, metal-binding site YPDSF_3578 IPR000760 Inositol monophosphatase-like YPDSF_3579 IPR006179 5'-Nucleotidase/apyrase YPDSF_3579 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type YPDSF_3579 IPR006146 5'-Nucleotidase, conserved site YPDSF_3579 IPR041827 CpdB, N-terminal metallophosphatase domain YPDSF_3579 IPR036907 5'-Nucleotidase, C-terminal domain superfamily YPDSF_3579 IPR006294 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase YPDSF_3579 IPR008334 5'-Nucleotidase, C-terminal YPDSF_3579 IPR029052 Metallo-dependent phosphatase-like YPDSF_3580 IPR012312 Haemerythrin-like YPDSF_3580 IPR019903 Repair of iron centres family YPDSF_3580 IPR023742 Iron-sulfur cluster repair protein YftE YPDSF_3581 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal YPDSF_3581 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YPDSF_3581 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily YPDSF_3582 IPR007340 Opacity-associated protein A YPDSF_3582 IPR013731 Opacity-associated protein A, N-terminal YPDSF_3584 IPR002686 Transposase IS200-like YPDSF_3584 IPR036515 Transposase IS200-like superfamily YPDSF_3585 IPR009027 Ribosomal protein L9/RNase H1, N-terminal YPDSF_3585 IPR020594 Ribosomal protein L9, bacteria/chloroplast YPDSF_3585 IPR000244 Ribosomal protein L9 YPDSF_3585 IPR036791 Ribosomal protein L9, C-terminal domain superfamily YPDSF_3585 IPR036935 Ribosomal protein L9, N-terminal domain superfamily YPDSF_3585 IPR020070 Ribosomal protein L9, N-terminal YPDSF_3585 IPR020069 Ribosomal protein L9, C-terminal YPDSF_3586 IPR036870 Ribosomal protein S18 superfamily YPDSF_3586 IPR018275 Ribosomal protein S18, conserved site YPDSF_3586 IPR001648 Ribosomal protein S18 YPDSF_3587 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 YPDSF_3587 IPR000529 Ribosomal protein S6 YPDSF_3587 IPR020815 Ribosomal protein S6, conserved site YPDSF_3587 IPR035980 Ribosomal protein S6 superfamily YPDSF_3587 IPR020814 Ribosomal protein S6, plastid/chloroplast YPDSF_3588 IPR029058 Alpha/Beta hydrolase fold YPDSF_3588 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain YPDSF_3589 IPR003593 AAA+ ATPase domain YPDSF_3589 IPR001270 ClpA/B family YPDSF_3589 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3589 IPR002611 IstB-like ATP-binding protein YPDSF_3589 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_3590 IPR012337 Ribonuclease H-like superfamily YPDSF_3590 IPR006120 Resolvase, HTH domain YPDSF_3590 IPR001584 Integrase, catalytic core YPDSF_3590 IPR036397 Ribonuclease H superfamily YPDSF_3590 IPR017894 HTH domain, IS21 transposase-type YPDSF_3591 IPR036275 YdgH-like superfamily YPDSF_3591 IPR010854 Domain of unknown function DUF1471 YPDSF_3591 IPR025543 Dodecin-like YPDSF_3592 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily YPDSF_3592 IPR041504 Adaptive response protein AidB, N-terminal YPDSF_3592 IPR034184 Putative acyl-CoA dehydrogenase AidB YPDSF_3592 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal YPDSF_3592 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal YPDSF_3592 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain YPDSF_3592 IPR006089 Acyl-CoA dehydrogenase, conserved site YPDSF_3593 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPDSF_3593 IPR029028 Alpha/beta knot methyltransferases YPDSF_3593 IPR004441 RNA methyltransferase TrmH family YPDSF_3593 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPDSF_3593 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB YPDSF_3593 IPR029064 50S ribosomal protein L30e-like YPDSF_3593 IPR013123 RNA 2-O ribose methyltransferase, substrate binding YPDSF_3594 IPR001900 Ribonuclease II/R YPDSF_3594 IPR040476 RNase II/RNase R, cold shock domain YPDSF_3594 IPR011129 Cold shock domain YPDSF_3594 IPR011805 Ribonuclease R YPDSF_3594 IPR012340 Nucleic acid-binding, OB-fold YPDSF_3594 IPR003029 S1 domain YPDSF_3594 IPR022967 RNA-binding domain, S1 YPDSF_3594 IPR004476 Ribonuclease II/ribonuclease R YPDSF_3594 IPR022966 Ribonuclease II/R, conserved site YPDSF_3594 IPR013668 Ribonuclease R winged-helix domain YPDSF_3594 IPR013223 Ribonuclease B, N-terminal OB domain YPDSF_3595 IPR000944 Transcription regulator Rrf2-type YPDSF_3595 IPR023761 Transcriptional repressor HTH, NsrR YPDSF_3595 IPR030489 Transcription regulator Rrf2-type, conserved site YPDSF_3595 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3595 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_3596 IPR033128 Adenylosuccinate synthase, active site YPDSF_3596 IPR042111 Adenylosuccinate synthetase, domain 3 YPDSF_3596 IPR018220 Adenylosuccinate synthase, GTP-binding site YPDSF_3596 IPR001114 Adenylosuccinate synthetase YPDSF_3596 IPR042109 Adenylosuccinate synthetase, domain 1 YPDSF_3596 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3596 IPR042110 Adenylosuccinate synthetase, domain 2 YPDSF_3597 IPR019201 Protein of unknown function DUF2065 YPDSF_3598 IPR010200 HflC YPDSF_3598 IPR036013 Band 7/SPFH domain superfamily YPDSF_3598 IPR001107 Band 7 domain YPDSF_3599 IPR001107 Band 7 domain YPDSF_3599 IPR010201 HflK YPDSF_3599 IPR001972 Stomatin family YPDSF_3599 IPR020980 Menbrane protein HflK, N-terminal YPDSF_3599 IPR036013 Band 7/SPFH domain superfamily YPDSF_3600 IPR032305 GTP-binding protein, middle domain YPDSF_3600 IPR035647 EF-G domain III/V-like YPDSF_3600 IPR006073 GTP binding domain YPDSF_3600 IPR042108 GTPase HflX, N-terminal domain superfamily YPDSF_3600 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3600 IPR016496 GTPase HflX YPDSF_3600 IPR025121 GTPase HflX, N-terminal YPDSF_3600 IPR030394 HflX-type guanine nucleotide-binding (G) domain YPDSF_3601 IPR010920 LSM domain superfamily YPDSF_3601 IPR005001 RNA-binding protein Hfq YPDSF_3602 IPR039657 Dimethylallyltransferase YPDSF_3602 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3602 IPR018022 IPP transferase YPDSF_3603 IPR013507 DNA mismatch repair protein, S5 domain 2-like YPDSF_3603 IPR042121 MutL, C-terminal domain, regulatory subdomain YPDSF_3603 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms YPDSF_3603 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_3603 IPR014790 MutL, C-terminal, dimerisation YPDSF_3603 IPR002099 DNA mismatch repair protein family, N-terminal YPDSF_3603 IPR042120 MutL, C-terminal domain, dimerisation subdomain YPDSF_3603 IPR014762 DNA mismatch repair, conserved site YPDSF_3603 IPR037198 MutL, C-terminal domain superfamily YPDSF_3603 IPR020568 Ribosomal protein S5 domain 2-type fold YPDSF_3603 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPDSF_3603 IPR020667 DNA mismatch repair protein, MutL YPDSF_3604 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain YPDSF_3605 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE YPDSF_3605 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3606 IPR036652 YjeF N-terminal domain superfamily YPDSF_3606 IPR004443 YjeF N-terminal domain YPDSF_3606 IPR029056 Ribokinase-like YPDSF_3606 IPR017953 Carbohydrate kinase, predicted, conserved site YPDSF_3606 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr YPDSF_3606 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase YPDSF_3607 IPR009051 Alpha-helical ferredoxin YPDSF_3607 IPR013542 Domain of unknown function DUF1730 YPDSF_3607 IPR004453 Epoxyqueuosine reductase QueG YPDSF_3607 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPDSF_3607 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPDSF_3608 IPR036397 Ribonuclease H superfamily YPDSF_3608 IPR012337 Ribonuclease H-like superfamily YPDSF_3608 IPR022894 Oligoribonuclease YPDSF_3608 IPR013520 Exonuclease, RNase T/DNA polymerase III YPDSF_3609 IPR010914 RsgA GTPase domain YPDSF_3609 IPR004881 Ribosome biogenesis GTPase RsgA YPDSF_3609 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3609 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain YPDSF_3611 IPR033177 Phosphatidylserine decarboxylase YPDSF_3611 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 YPDSF_3611 IPR003817 Phosphatidylserine decarboxylase-related YPDSF_3612 IPR025692 Mechanosensitive ion channel inner membrane domain 1 YPDSF_3612 IPR024393 Mechanosensitive ion channel MscS, porin domain YPDSF_3612 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 YPDSF_3612 IPR006686 Mechanosensitive ion channel MscS, conserved site YPDSF_3612 IPR010920 LSM domain superfamily YPDSF_3612 IPR011066 Mechanosensitive ion channel MscS, C-terminal YPDSF_3612 IPR023408 Mechanosensitive ion channel MscS domain superfamily YPDSF_3612 IPR006685 Mechanosensitive ion channel MscS YPDSF_3613 IPR004525 Elongation factor P--(R)-beta-lysine ligase YPDSF_3613 IPR006195 Aminoacyl-tRNA synthetase, class II YPDSF_3613 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YPDSF_3613 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal YPDSF_3614 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain YPDSF_3614 IPR005884 Fumarate reductase, flavoprotein subunit YPDSF_3614 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal YPDSF_3614 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily YPDSF_3614 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit YPDSF_3614 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site YPDSF_3614 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily YPDSF_3614 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_3615 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal YPDSF_3615 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein YPDSF_3615 IPR036010 2Fe-2S ferredoxin-like superfamily YPDSF_3615 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPDSF_3615 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain YPDSF_3615 IPR012675 Beta-grasp domain superfamily YPDSF_3615 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPDSF_3615 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPDSF_3615 IPR009051 Alpha-helical ferredoxin YPDSF_3616 IPR003510 Fumarate reductase, subunit C YPDSF_3616 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit YPDSF_3617 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit YPDSF_3617 IPR003418 Fumarate reductase, subunit D YPDSF_3618 IPR000390 Small multidrug resistance protein family YPDSF_3619 IPR008991 Translation protein SH3-like domain superfamily YPDSF_3619 IPR001059 Translation elongation factor P/YeiP, central YPDSF_3619 IPR011768 Translation elongation factor P YPDSF_3619 IPR012340 Nucleic acid-binding, OB-fold YPDSF_3619 IPR015365 Elongation factor P, C-terminal YPDSF_3619 IPR014722 Ribosomal protein L2, domain 2 YPDSF_3619 IPR020599 Translation elongation factor P/YeiP YPDSF_3619 IPR013852 Translation elongation factor P/YeiP, conserved site YPDSF_3619 IPR013185 Translation elongation factor, KOW-like YPDSF_3620 IPR013785 Aldolase-type TIM barrel YPDSF_3620 IPR007197 Radical SAM YPDSF_3620 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase YPDSF_3620 IPR022462 Lysine-2,3-aminomutase-like YPDSF_3621 IPR025294 Protein of unknown function DUF4156 YPDSF_3622 IPR027409 GroEL-like apical domain superfamily YPDSF_3622 IPR002423 Chaperonin Cpn60/TCP-1 family YPDSF_3622 IPR001844 Chaperonin Cpn60 YPDSF_3622 IPR027413 GroEL-like equatorial domain superfamily YPDSF_3622 IPR018370 Chaperonin Cpn60, conserved site YPDSF_3622 IPR027410 TCP-1-like chaperonin intermediate domain superfamily YPDSF_3623 IPR018369 Chaperonin GroES, conserved site YPDSF_3623 IPR037124 GroES chaperonin superfamily YPDSF_3623 IPR011032 GroES-like superfamily YPDSF_3623 IPR020818 GroES chaperonin family YPDSF_3624 IPR007313 FxsA cytoplasmic membrane protein YPDSF_3625 IPR000362 Fumarate lyase family YPDSF_3625 IPR022761 Fumarate lyase, N-terminal YPDSF_3625 IPR020557 Fumarate lyase, conserved site YPDSF_3625 IPR004708 Aspartate ammonia-lyase YPDSF_3625 IPR024083 Fumarase/histidase, N-terminal YPDSF_3625 IPR018951 Fumarase C, C-terminal YPDSF_3625 IPR008948 L-Aspartase-like YPDSF_3626 IPR004668 Anaerobic c4-dicarboxylate membrane transporter YPDSF_3627 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPDSF_3627 IPR004323 Divalent ion tolerance protein, CutA YPDSF_3627 IPR023700 Divalent cation tolerance protein CutA, Enterobacteria YPDSF_3627 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPDSF_3628 IPR022910 Thiol:disulphide interchange protein DsbD YPDSF_3628 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily YPDSF_3628 IPR036249 Thioredoxin-like superfamily YPDSF_3628 IPR017937 Thioredoxin, conserved site YPDSF_3628 IPR035671 DsbD gamma YPDSF_3628 IPR003834 Cytochrome C biogenesis protein, transmembrane domain YPDSF_3628 IPR013766 Thioredoxin domain YPDSF_3628 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain YPDSF_3629 IPR041924 Formate dehydrogenase H, N-terminal YPDSF_3629 IPR041925 Formate dehydrogenase H, molybdopterin-binding domain YPDSF_3629 IPR006478 Formate dehydrogenase, alpha subunit YPDSF_3629 IPR006657 Molybdopterin dinucleotide-binding domain YPDSF_3629 IPR009010 Aspartate decarboxylase-like domain superfamily YPDSF_3629 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPDSF_3629 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPDSF_3629 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPDSF_3629 IPR006656 Molybdopterin oxidoreductase YPDSF_3630 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPDSF_3630 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPDSF_3631 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPDSF_3631 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPDSF_3631 IPR028261 Dihydroprymidine dehydrogenase domain II YPDSF_3631 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_3631 IPR009051 Alpha-helical ferredoxin YPDSF_3631 IPR023753 FAD/NAD(P)-binding domain YPDSF_3631 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 YPDSF_3632 IPR001647 DNA-binding HTH domain, TetR-type YPDSF_3632 IPR009057 Homeobox-like domain superfamily YPDSF_3632 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPDSF_3635 IPR005063 Transposase, IS1 YPDSF_3637 IPR004673 L-rhamnose-proton symport, RhaT YPDSF_3639 IPR023699 Transcription activator HTH, RhaR YPDSF_3639 IPR003313 AraC-type arabinose-binding/dimerisation domain YPDSF_3639 IPR011051 RmlC-like cupin domain superfamily YPDSF_3639 IPR014710 RmlC-like jelly roll fold YPDSF_3639 IPR018062 HTH domain AraC-type, conserved site YPDSF_3639 IPR018060 DNA binding HTH domain, AraC-type YPDSF_3639 IPR009057 Homeobox-like domain superfamily YPDSF_3639 IPR020449 Transcription regulator HTH, AraC- type YPDSF_3640 IPR020449 Transcription regulator HTH, AraC- type YPDSF_3640 IPR023609 Transcription regulator HTH, RhaS YPDSF_3640 IPR014710 RmlC-like jelly roll fold YPDSF_3640 IPR018062 HTH domain AraC-type, conserved site YPDSF_3640 IPR018060 DNA binding HTH domain, AraC-type YPDSF_3640 IPR037923 Transcription regulator HTH-like YPDSF_3640 IPR009057 Homeobox-like domain superfamily YPDSF_3640 IPR003313 AraC-type arabinose-binding/dimerisation domain YPDSF_3642 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPDSF_3642 IPR000577 Carbohydrate kinase, FGGY YPDSF_3642 IPR013449 Rhamnulokinase YPDSF_3642 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPDSF_3643 IPR036237 Xylose isomerase-like superfamily YPDSF_3643 IPR009308 Rhamnose isomerase YPDSF_3644 IPR001303 Class II aldolase/adducin N-terminal YPDSF_3644 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPDSF_3644 IPR013447 Rhamnulose-1-phosphate aldolase YPDSF_3645 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YPDSF_3645 IPR039697 Iron-type alcohol dehydrogenase-like YPDSF_3645 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA YPDSF_3646 IPR011008 Dimeric alpha-beta barrel YPDSF_3646 IPR013448 L-rhamnose mutarotase YPDSF_3646 IPR008000 Rhamnose/fucose mutarotase YPDSF_3647 IPR011344 Single-stranded DNA-binding protein YPDSF_3647 IPR000424 Primosome PriB/single-strand DNA-binding YPDSF_3647 IPR012340 Nucleic acid-binding, OB-fold YPDSF_3648 IPR041102 UvrA, interaction domain YPDSF_3648 IPR041552 UvrA DNA-binding domain YPDSF_3648 IPR004602 UvrABC system subunit A YPDSF_3648 IPR003439 ABC transporter-like YPDSF_3648 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3648 IPR017871 ABC transporter, conserved site YPDSF_3649 IPR007351 Uncharacterised protein YjbR YPDSF_3649 IPR038056 YjbR-like superfamily YPDSF_3650 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site YPDSF_3650 IPR000796 Aspartate/other aminotransferase YPDSF_3650 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_3650 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_3650 IPR004839 Aminotransferase, class I/classII YPDSF_3650 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_3651 IPR000821 Alanine racemase YPDSF_3651 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site YPDSF_3651 IPR001608 Alanine racemase, N-terminal YPDSF_3651 IPR029066 PLP-binding barrel YPDSF_3651 IPR011079 Alanine racemase, C-terminal YPDSF_3651 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal YPDSF_3652 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal YPDSF_3652 IPR003593 AAA+ ATPase domain YPDSF_3652 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily YPDSF_3652 IPR007692 DNA helicase, DnaB type YPDSF_3652 IPR007694 DNA helicase, DnaB-like, C-terminal YPDSF_3652 IPR007693 DNA helicase, DnaB-like, N-terminal YPDSF_3652 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3653 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site YPDSF_3653 IPR020843 Polyketide synthase, enoylreductase domain YPDSF_3653 IPR036291 NAD(P)-binding domain superfamily YPDSF_3653 IPR013149 Alcohol dehydrogenase, C-terminal YPDSF_3653 IPR013154 Alcohol dehydrogenase, N-terminal YPDSF_3653 IPR011032 GroES-like superfamily YPDSF_3654 IPR014318 Phage shock protein, PspG YPDSF_3655 IPR018517 tRNA-dihydrouridine synthase, conserved site YPDSF_3655 IPR001269 tRNA-dihydrouridine synthase YPDSF_3655 IPR004653 tRNA-dihydrouridine(20/20a) synthase YPDSF_3655 IPR013785 Aldolase-type TIM barrel YPDSF_3655 IPR035587 DUS-like, FMN-binding domain YPDSF_3656 IPR002481 Ferric-uptake regulator YPDSF_3656 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_3656 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3657 IPR006200 Transcription regulator LexA YPDSF_3657 IPR015927 Peptidase S24/S26A/S26B/S26C YPDSF_3657 IPR006199 LexA repressor, DNA-binding domain YPDSF_3657 IPR039418 LexA-like YPDSF_3657 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3657 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_3657 IPR036286 LexA/Signal peptidase-like superfamily YPDSF_3657 IPR006197 Peptidase S24, LexA-like YPDSF_3658 IPR000829 DAGK family YPDSF_3658 IPR036945 Diacylglycerol kinase (DAGK) superfamily YPDSF_3658 IPR033718 Diacylglycerol kinase, prokaryotic YPDSF_3659 IPR002123 Phospholipid/glycerol acyltransferase YPDSF_3659 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB YPDSF_3659 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase YPDSF_3659 IPR041728 GPAT/DHAPAT, acyltransferase domain YPDSF_3660 IPR006370 4-hydroxybenzoate polyprenyltransferase-like YPDSF_3660 IPR039653 Prenyltransferase YPDSF_3660 IPR000537 UbiA prenyltransferase family YPDSF_3660 IPR030470 UbiA prenyltransferase conserved site YPDSF_3661 IPR007440 Chorismate--pyruvate lyase YPDSF_3661 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YPDSF_3663 IPR011050 Pectin lyase fold/virulence factor YPDSF_3663 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPDSF_3663 IPR006315 Outer membrane autotransporter barrel YPDSF_3663 IPR013425 Autotransporter-associated beta strand repeat YPDSF_3663 IPR036709 Autotransporter beta-domain superfamily YPDSF_3663 IPR005546 Autotransporter beta-domain YPDSF_3664 IPR006311 Twin-arginine translocation pathway, signal sequence YPDSF_3664 IPR006094 FAD linked oxidase, N-terminal YPDSF_3664 IPR036318 FAD-binding, type PCMH-like superfamily YPDSF_3664 IPR016166 FAD-binding domain, PCMH-type YPDSF_3664 IPR012951 Berberine/berberine-like YPDSF_3667 IPR013783 Immunoglobulin-like fold YPDSF_3667 IPR008962 PapD-like superfamily YPDSF_3667 IPR016147 Pili assembly chaperone, N-terminal YPDSF_3667 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPDSF_3668 IPR025949 PapC-like, C-terminal domain YPDSF_3668 IPR000015 Outer membrane usher protein YPDSF_3668 IPR042186 Outer membrane usher protein FimD, plug domain YPDSF_3668 IPR025885 PapC, N-terminal domain YPDSF_3668 IPR037224 PapC, N-terminal domain superfamily YPDSF_3670 IPR003325 TerD domain YPDSF_3671 IPR003325 TerD domain YPDSF_3672 IPR005496 Integral membrane protein TerC YPDSF_3672 IPR022369 Integral membrane protein TerC, riboswitch-linked YPDSF_3673 IPR029024 TerB-like YPDSF_3673 IPR007791 Co-chaperone DjlA, N-terminal YPDSF_3674 IPR003325 TerD domain YPDSF_3674 IPR017115 Tellurite resistance, TerA YPDSF_3675 IPR003325 TerD domain YPDSF_3679 IPR028157 PELOTA RNA-binding domain YPDSF_3679 IPR011215 Phosphoribosyl transferase YPDSF_3681 IPR011233 Tellurite/Phi/PacB toxicity protection, TerW YPDSF_3683 IPR026332 Anaerobilin synthase HutW YPDSF_3683 IPR006638 Elp3/MiaB/NifB YPDSF_3683 IPR023404 Radical SAM, alpha/beta horseshoe YPDSF_3683 IPR034505 Anaerobic coproporphyrinogen-III oxidase YPDSF_3683 IPR007197 Radical SAM YPDSF_3684 IPR010413 Intracellular heme transport protein HutX-like YPDSF_3685 IPR036291 NAD(P)-binding domain superfamily YPDSF_3685 IPR016040 NAD(P)-binding domain YPDSF_3686 IPR019600 Hemin uptake protein HemP YPDSF_3687 IPR010916 TonB box, conserved site YPDSF_3687 IPR039426 Vitamin B12 transporter BtuB-like YPDSF_3687 IPR012910 TonB-dependent receptor, plug domain YPDSF_3687 IPR011276 TonB-dependent haem/haemoglobin receptor YPDSF_3687 IPR037066 TonB-dependent receptor, plug domain superfamily YPDSF_3687 IPR000531 TonB-dependent receptor-like, beta-barrel YPDSF_3687 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor YPDSF_3687 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPDSF_3688 IPR007845 Haemin-degrading HemS/ChuX domain YPDSF_3689 IPR002491 ABC transporter periplasmic binding domain YPDSF_3690 IPR037294 ABC transporter, BtuC-like YPDSF_3690 IPR000522 ABC transporter, permease protein, BtuC-like YPDSF_3691 IPR003593 AAA+ ATPase domain YPDSF_3691 IPR003439 ABC transporter-like YPDSF_3691 IPR015863 ABC transporter, hemin import, HmuV YPDSF_3691 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3691 IPR017871 ABC transporter, conserved site YPDSF_3692 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_3692 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_3692 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_3692 IPR006233 Cystathionine beta-lyase, bacterial YPDSF_3692 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YPDSF_3693 IPR018227 Amino acid/polyamine transporter 2 YPDSF_3694 IPR005119 LysR, substrate-binding YPDSF_3694 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_3694 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3694 IPR000847 Transcription regulator HTH, LysR YPDSF_3695 IPR036868 TusA-like domain superfamily YPDSF_3695 IPR001455 TusA-like domain YPDSF_3696 IPR007272 Sulphur transport domain YPDSF_3697 IPR006307 Type III exporter system, secretion apparatus protein BsaZ YPDSF_3697 IPR006135 Type III secretion system substrate exporter YPDSF_3697 IPR029025 Type III secretion system substrate exporter, C-terminal YPDSF_3698 IPR006304 Type III secretion protein SpaR/YscT YPDSF_3698 IPR002010 Type III secretion system inner membrane R protein YPDSF_3699 IPR002191 Bacterial export protein family 3 YPDSF_3699 IPR006306 Type III secretion protein HrpO YPDSF_3700 IPR005773 Yop virulence translocation protein R YPDSF_3700 IPR005838 Type III secretion system inner membrane P protein YPDSF_3701 IPR001543 Surface presentation of antigen (SpoA) YPDSF_3701 IPR036429 SpoA-like superfamily YPDSF_3701 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO YPDSF_3701 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb YPDSF_3704 IPR003593 AAA+ ATPase domain YPDSF_3704 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPDSF_3704 IPR005714 ATPase, type III secretion system, FliI/YscN YPDSF_3704 IPR013380 ATPase, type III secretion system, H+-transporting YPDSF_3704 IPR040627 T3SS EscN ATPase, C-terminal YPDSF_3704 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3705 IPR042196 FHIPEP, domain 4 YPDSF_3705 IPR025505 FHIPEP conserved site YPDSF_3705 IPR001712 Type III secretion system FHIPEP YPDSF_3705 IPR006302 Type III secretion protein HrcV YPDSF_3705 IPR042193 FHIPEP, domain 3 YPDSF_3708 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ YPDSF_3708 IPR006182 Secretory protein YscJ/FliF YPDSF_3711 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like YPDSF_3711 IPR018062 HTH domain AraC-type, conserved site YPDSF_3711 IPR009057 Homeobox-like domain superfamily YPDSF_3711 IPR018060 DNA binding HTH domain, AraC-type YPDSF_3715 IPR001789 Signal transduction response regulator, receiver domain YPDSF_3715 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPDSF_3715 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPDSF_3715 IPR036641 HPT domain superfamily YPDSF_3715 IPR019247 Histidine kinase BarA, N-terminal YPDSF_3715 IPR005467 Histidine kinase domain YPDSF_3715 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPDSF_3715 IPR011006 CheY-like superfamily YPDSF_3715 IPR003660 HAMP domain YPDSF_3715 IPR003594 Histidine kinase/HSP90-like ATPase YPDSF_3715 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_3715 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPDSF_3716 IPR001789 Signal transduction response regulator, receiver domain YPDSF_3716 IPR016032 Signal transduction response regulator, C-terminal effector YPDSF_3716 IPR011006 CheY-like superfamily YPDSF_3716 IPR000792 Transcription regulator LuxR, C-terminal YPDSF_3717 IPR033380 Glutamate-aspartate symport protein GltP/GltT YPDSF_3717 IPR018107 Sodium:dicarboxylate symporter, conserved site YPDSF_3717 IPR001991 Sodium:dicarboxylate symporter YPDSF_3717 IPR034703 Proton/glutamate-aspartate symporter GltP YPDSF_3717 IPR036458 Sodium:dicarboxylate symporter superfamily YPDSF_3718 IPR042099 AMP-dependent synthetase-like superfamily YPDSF_3718 IPR020845 AMP-binding, conserved site YPDSF_3718 IPR000873 AMP-dependent synthetase/ligase YPDSF_3718 IPR025110 AMP-binding enzyme, C-terminal domain YPDSF_3718 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain YPDSF_3718 IPR011904 Acetate-CoA ligase YPDSF_3719 IPR007436 Protein of unknown function DUF485 YPDSF_3720 IPR014083 Cation/acetate symporter ActP YPDSF_3720 IPR038377 Sodium/glucose symporter superfamily YPDSF_3720 IPR001734 Sodium/solute symporter YPDSF_3720 IPR018212 Sodium/solute symporter, conserved site YPDSF_3722 IPR036397 Ribonuclease H superfamily YPDSF_3722 IPR017894 HTH domain, IS21 transposase-type YPDSF_3722 IPR001584 Integrase, catalytic core YPDSF_3722 IPR012337 Ribonuclease H-like superfamily YPDSF_3722 IPR006120 Resolvase, HTH domain YPDSF_3723 IPR001270 ClpA/B family YPDSF_3723 IPR003593 AAA+ ATPase domain YPDSF_3723 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3723 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_3723 IPR002611 IstB-like ATP-binding protein YPDSF_3724 IPR001584 Integrase, catalytic core YPDSF_3724 IPR012337 Ribonuclease H-like superfamily YPDSF_3724 IPR036397 Ribonuclease H superfamily YPDSF_3724 IPR025948 HTH-like domain YPDSF_3725 IPR009057 Homeobox-like domain superfamily YPDSF_3725 IPR002514 Transposase IS3/IS911family YPDSF_3726 IPR011607 Methylglyoxal synthase-like domain YPDSF_3726 IPR016193 Cytidine deaminase-like YPDSF_3726 IPR024051 AICAR transformylase, duplicated domain superfamily YPDSF_3726 IPR036914 Methylglyoxal synthase-like domain superfamily YPDSF_3726 IPR002695 Bifunctional purine biosynthesis protein PurH-like YPDSF_3727 IPR011054 Rudiment single hybrid motif YPDSF_3727 IPR020559 Phosphoribosylglycinamide synthetase, conserved site YPDSF_3727 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal YPDSF_3727 IPR011761 ATP-grasp fold YPDSF_3727 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily YPDSF_3727 IPR020560 Phosphoribosylglycinamide synthetase, C-domain YPDSF_3727 IPR000115 Phosphoribosylglycinamide synthetase YPDSF_3727 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YPDSF_3727 IPR013815 ATP-grasp fold, subdomain 1 YPDSF_3727 IPR016185 Pre-ATP-grasp domain superfamily YPDSF_3728 IPR016500 Uncharacterised conserved protein UCP006993 YPDSF_3728 IPR010858 Protein of unknown function DUF1481 YPDSF_3729 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily YPDSF_3729 IPR020816 Histone-like DNA-binding protein, conserved site YPDSF_3729 IPR000119 Histone-like DNA-binding protein YPDSF_3730 IPR007338 Protein of unknown function DUF416 YPDSF_3730 IPR023381 YP001051499.1-like domain superfamily YPDSF_3731 IPR007581 Endonuclease V YPDSF_3732 IPR006361 Uroporphyrinogen decarboxylase HemE YPDSF_3732 IPR038071 UROD/MetE-like superfamily YPDSF_3732 IPR000257 Uroporphyrinogen decarboxylase (URO-D) YPDSF_3734 IPR000086 NUDIX hydrolase domain YPDSF_3734 IPR015376 Zinc ribbon, NADH pyrophosphatase YPDSF_3734 IPR022925 NADH pyrophosphatase NudC YPDSF_3734 IPR020084 NUDIX hydrolase, conserved site YPDSF_3734 IPR015797 NUDIX hydrolase-like domain superfamily YPDSF_3735 IPR023785 Regulator of RNA polymerase sigma(70) subunit, Rsd YPDSF_3735 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ YPDSF_3735 IPR038309 Rsd/AlgQ superfamily YPDSF_3736 IPR025747 ThiC-associated domain YPDSF_3736 IPR038521 ThiC/Bza superfamily YPDSF_3736 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B YPDSF_3736 IPR037509 Phosphomethylpyrimidine synthase YPDSF_3737 IPR022998 Thiamine phosphate synthase/TenI YPDSF_3737 IPR034291 Thiamine phosphate synthase YPDSF_3737 IPR013785 Aldolase-type TIM barrel YPDSF_3737 IPR036206 Thiamin phosphate synthase superfamily YPDSF_3738 IPR012731 Thiazole biosynthesis adenylyltransferase ThiF YPDSF_3738 IPR035985 Ubiquitin-activating enzyme YPDSF_3738 IPR000594 THIF-type NAD/FAD binding fold YPDSF_3744 IPR012754 DNA-directed RNA polymerase, subunit beta-prime YPDSF_3744 IPR006592 RNA polymerase, N-terminal YPDSF_3744 IPR007080 RNA polymerase Rpb1, domain 1 YPDSF_3744 IPR007066 RNA polymerase Rpb1, domain 3 YPDSF_3744 IPR042102 RNA polymerase Rpb1, domain 3 superfamily YPDSF_3744 IPR007083 RNA polymerase Rpb1, domain 4 YPDSF_3744 IPR007081 RNA polymerase Rpb1, domain 5 YPDSF_3744 IPR038120 RNA polymerase Rpb1, funnel domain superfamily YPDSF_3744 IPR000722 RNA polymerase, alpha subunit YPDSF_3745 IPR014724 RNA polymerase Rpb2, OB-fold YPDSF_3745 IPR007641 RNA polymerase Rpb2, domain 7 YPDSF_3745 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain YPDSF_3745 IPR007644 RNA polymerase, beta subunit, protrusion YPDSF_3745 IPR007642 RNA polymerase Rpb2, domain 2 YPDSF_3745 IPR015712 DNA-directed RNA polymerase, subunit 2 YPDSF_3745 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain YPDSF_3745 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily YPDSF_3745 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type YPDSF_3745 IPR007121 RNA polymerase, beta subunit, conserved site YPDSF_3745 IPR007645 RNA polymerase Rpb2, domain 3 YPDSF_3745 IPR037034 RNA polymerase Rpb2, domain 2 superfamily YPDSF_3746 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily YPDSF_3746 IPR008932 Ribosomal protein L7/L12, oligomerisation YPDSF_3746 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like YPDSF_3746 IPR000206 Ribosomal protein L7/L12 YPDSF_3746 IPR013823 Ribosomal protein L7/L12, C-terminal YPDSF_3747 IPR001790 Ribosomal protein L10P YPDSF_3747 IPR002363 Ribosomal protein L10, eubacterial, conserved site YPDSF_3747 IPR022973 Ribosomal protein L10 YPDSF_3748 IPR023673 Ribosomal protein L1, conserved site YPDSF_3748 IPR002143 Ribosomal protein L1 YPDSF_3748 IPR023674 Ribosomal protein L1-like YPDSF_3748 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein YPDSF_3748 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich YPDSF_3748 IPR005878 Ribosomal protein L1, bacterial-type YPDSF_3749 IPR020784 Ribosomal protein L11, N-terminal YPDSF_3749 IPR020785 Ribosomal protein L11, conserved site YPDSF_3749 IPR036769 Ribosomal protein L11, C-terminal domain superfamily YPDSF_3749 IPR020783 Ribosomal protein L11, C-terminal YPDSF_3749 IPR006519 Ribosomal protein L11, bacterial-type YPDSF_3749 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily YPDSF_3749 IPR000911 Ribosomal protein L11/L12 YPDSF_3750 IPR036735 NusG, N-terminal domain superfamily YPDSF_3750 IPR005824 KOW YPDSF_3750 IPR008991 Translation protein SH3-like domain superfamily YPDSF_3750 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site YPDSF_3750 IPR001062 Transcription antitermination protein, NusG YPDSF_3750 IPR014722 Ribosomal protein L2, domain 2 YPDSF_3750 IPR006645 NusG, N-terminal YPDSF_3751 IPR005807 SecE subunit of protein translocation complex, bacterial-like YPDSF_3751 IPR038379 SecE superfamily YPDSF_3751 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit YPDSF_3752 IPR031157 Tr-type G domain, conserved site YPDSF_3752 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3752 IPR005225 Small GTP-binding protein domain YPDSF_3752 IPR000795 Transcription factor, GTP-binding domain YPDSF_3752 IPR033720 Elongation factor Tu, domain 2 YPDSF_3752 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle YPDSF_3752 IPR009000 Translation protein, beta-barrel domain superfamily YPDSF_3752 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal YPDSF_3752 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPDSF_3752 IPR004161 Translation elongation factor EFTu-like, domain 2 YPDSF_3752 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain YPDSF_3753 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_3753 IPR001270 ClpA/B family YPDSF_3753 IPR003593 AAA+ ATPase domain YPDSF_3753 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3753 IPR002611 IstB-like ATP-binding protein YPDSF_3754 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_3754 IPR003593 AAA+ ATPase domain YPDSF_3754 IPR002611 IstB-like ATP-binding protein YPDSF_3754 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3754 IPR001270 ClpA/B family YPDSF_3755 IPR036397 Ribonuclease H superfamily YPDSF_3755 IPR012337 Ribonuclease H-like superfamily YPDSF_3755 IPR006120 Resolvase, HTH domain YPDSF_3755 IPR001584 Integrase, catalytic core YPDSF_3755 IPR017894 HTH domain, IS21 transposase-type YPDSF_3756 IPR022742 Serine aminopeptidase, S33 YPDSF_3756 IPR029058 Alpha/Beta hydrolase fold YPDSF_3756 IPR012354 Esterase/lipase YPDSF_3758 IPR004840 Amino acid permease, conserved site YPDSF_3758 IPR004841 Amino acid permease/ SLC12A domain YPDSF_3759 IPR024083 Fumarase/histidase, N-terminal YPDSF_3759 IPR001106 Aromatic amino acid lyase YPDSF_3759 IPR005921 Histidine ammonia-lyase YPDSF_3759 IPR008948 L-Aspartase-like YPDSF_3759 IPR022313 Phenylalanine/histidine ammonia-lyases, active site YPDSF_3760 IPR036190 Urocanase superfamily YPDSF_3760 IPR023637 Urocanase YPDSF_3760 IPR035401 Urocanase, C-terminal domain YPDSF_3760 IPR038364 Urocanase, central domain superfamily YPDSF_3760 IPR023636 Urocanase conserved site YPDSF_3760 IPR035085 Urocanase, Rossmann-like domain YPDSF_3760 IPR035400 Urocanase, N-terminal domain YPDSF_3761 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site YPDSF_3761 IPR005858 Cysteine synthase CysM YPDSF_3761 IPR005856 Cysteine synthase YPDSF_3761 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPDSF_3761 IPR001926 Pyridoxal-phosphate dependent enzyme YPDSF_3762 IPR000836 Phosphoribosyltransferase domain YPDSF_3762 IPR005764 Adenine phosphoribosyl transferase YPDSF_3762 IPR029057 Phosphoribosyltransferase-like YPDSF_3764 IPR011761 ATP-grasp fold YPDSF_3765 IPR033870 FatB domain YPDSF_3765 IPR002491 ABC transporter periplasmic binding domain YPDSF_3766 IPR000522 ABC transporter, permease protein, BtuC-like YPDSF_3766 IPR037294 ABC transporter, BtuC-like YPDSF_3767 IPR037294 ABC transporter, BtuC-like YPDSF_3767 IPR000522 ABC transporter, permease protein, BtuC-like YPDSF_3768 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3768 IPR003439 ABC transporter-like YPDSF_3768 IPR003593 AAA+ ATPase domain YPDSF_3768 IPR017871 ABC transporter, conserved site YPDSF_3772 IPR025668 Transposase DDE domain YPDSF_3773 IPR025668 Transposase DDE domain YPDSF_3775 IPR038488 Integrase, DNA-binding domain superfamily YPDSF_3775 IPR025166 Integrase, DNA-binding domain YPDSF_3775 IPR002104 Integrase, catalytic domain YPDSF_3775 IPR010998 Integrase/recombinase, N-terminal YPDSF_3775 IPR004107 Integrase, SAM-like, N-terminal YPDSF_3775 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPDSF_3775 IPR013762 Integrase-like, catalytic domain superfamily YPDSF_3776 IPR018062 HTH domain AraC-type, conserved site YPDSF_3776 IPR020449 Transcription regulator HTH, AraC- type YPDSF_3776 IPR018060 DNA binding HTH domain, AraC-type YPDSF_3776 IPR028082 Periplasmic binding protein-like I YPDSF_3776 IPR009057 Homeobox-like domain superfamily YPDSF_3777 IPR001851 ABC transporter, permease YPDSF_3778 IPR003439 ABC transporter-like YPDSF_3778 IPR003593 AAA+ ATPase domain YPDSF_3778 IPR017871 ABC transporter, conserved site YPDSF_3778 IPR013455 ABC transporter, D-xylose, ATP-binding protein YPDSF_3778 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3779 IPR013456 D-xylose ABC transporter, substrate-binding protein YPDSF_3779 IPR028082 Periplasmic binding protein-like I YPDSF_3779 IPR025997 Periplasmic binding protein YPDSF_3780 IPR001998 Xylose isomerase YPDSF_3780 IPR013452 Xylose isomerase, bacterial-type YPDSF_3780 IPR036237 Xylose isomerase-like superfamily YPDSF_3781 IPR006000 Xylulokinase YPDSF_3781 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPDSF_3781 IPR000577 Carbohydrate kinase, FGGY YPDSF_3781 IPR018483 Carbohydrate kinase, FGGY, conserved site YPDSF_3781 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPDSF_3783 IPR008962 PapD-like superfamily YPDSF_3783 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPDSF_3783 IPR001829 Pili assembly chaperone, bacterial YPDSF_3783 IPR016148 Pili assembly chaperone, C-terminal YPDSF_3783 IPR018046 Pili assembly chaperone, conserved site YPDSF_3783 IPR016147 Pili assembly chaperone, N-terminal YPDSF_3783 IPR013783 Immunoglobulin-like fold YPDSF_3784 IPR042186 Outer membrane usher protein FimD, plug domain YPDSF_3784 IPR025949 PapC-like, C-terminal domain YPDSF_3784 IPR037224 PapC, N-terminal domain superfamily YPDSF_3784 IPR000015 Outer membrane usher protein YPDSF_3784 IPR025885 PapC, N-terminal domain YPDSF_3784 IPR018030 Fimbrial membrane usher, conserved site YPDSF_3785 IPR025949 PapC-like, C-terminal domain YPDSF_3785 IPR018030 Fimbrial membrane usher, conserved site YPDSF_3785 IPR037224 PapC, N-terminal domain superfamily YPDSF_3785 IPR042186 Outer membrane usher protein FimD, plug domain YPDSF_3785 IPR025885 PapC, N-terminal domain YPDSF_3785 IPR000015 Outer membrane usher protein YPDSF_3786 IPR000259 Fimbrial-type adhesion domain YPDSF_3786 IPR008966 Adhesion domain superfamily YPDSF_3786 IPR036937 Fimbrial-type adhesion domain superfamily YPDSF_3787 IPR032905 O-acetyltransferase WecH YPDSF_3787 IPR002656 Acyltransferase 3 YPDSF_3789 IPR025948 HTH-like domain YPDSF_3789 IPR012337 Ribonuclease H-like superfamily YPDSF_3789 IPR038965 Transposase InsF-like YPDSF_3789 IPR036397 Ribonuclease H superfamily YPDSF_3789 IPR001584 Integrase, catalytic core YPDSF_3790 IPR003171 Methylenetetrahydrofolate reductase YPDSF_3790 IPR004620 5,10-methylenetetrahydrofolate reductase YPDSF_3790 IPR029041 FAD-linked oxidoreductase-like YPDSF_3791 IPR036291 NAD(P)-binding domain superfamily YPDSF_3791 IPR019811 Homoserine dehydrogenase, conserved site YPDSF_3791 IPR001342 Homoserine dehydrogenase, catalytic YPDSF_3791 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I YPDSF_3791 IPR018042 Aspartate kinase, conserved site YPDSF_3791 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding YPDSF_3791 IPR001048 Aspartate/glutamate/uridylate kinase YPDSF_3791 IPR001341 Aspartate kinase YPDSF_3791 IPR041743 Bifunctional aspartokinase/homoserine dehydrogenase, N-terminal catalytic domain YPDSF_3791 IPR036393 Acetylglutamate kinase-like superfamily YPDSF_3792 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_3792 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_3792 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_3792 IPR011821 O-succinylhomoserine (thiol)-lyase YPDSF_3792 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YPDSF_3793 IPR002084 Methionine repressor MetJ YPDSF_3793 IPR023453 Methionine repressor MetJ domain superfamily YPDSF_3793 IPR010985 Ribbon-helix-helix YPDSF_3795 IPR008024 YiaAB two helix YPDSF_3795 IPR038972 Inner membrane protein YiaA-like YPDSF_3796 IPR027491 Ribosomal protein L31 type A YPDSF_3796 IPR002150 Ribosomal protein L31 YPDSF_3796 IPR034704 L28p-like YPDSF_3796 IPR042105 Ribosomal protein L31 superfamily YPDSF_3797 IPR041236 Primosomal protein N, C-terminal domain YPDSF_3797 IPR011545 DEAD/DEAH box helicase domain YPDSF_3797 IPR042115 Primosomal protein N', 3' DNA-binding domain superfamily YPDSF_3797 IPR041222 Primosomal protein N', 3' DNA-binding domain YPDSF_3797 IPR005259 Primosomal protein N' YPDSF_3797 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3797 IPR040498 PriA DNA helicase, Cys-rich region (CRR) domain YPDSF_3797 IPR001650 Helicase, C-terminal YPDSF_3797 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPDSF_3798 IPR000843 LacI-type HTH domain YPDSF_3798 IPR028082 Periplasmic binding protein-like I YPDSF_3798 IPR010982 Lambda repressor-like, DNA-binding domain superfamily YPDSF_3799 IPR011930 Cell division protein FtsN YPDSF_3799 IPR036680 Sporulation-like domain superfamily YPDSF_3799 IPR007730 Sporulation-like domain YPDSF_3800 IPR023333 Proteasome B-type subunit YPDSF_3800 IPR001353 Proteasome, subunit alpha/beta YPDSF_3800 IPR022281 ATP-dependent protease, HslV subunit YPDSF_3800 IPR029055 Nucleophile aminohydrolases, N-terminal YPDSF_3801 IPR003959 ATPase, AAA-type, core YPDSF_3801 IPR003593 AAA+ ATPase domain YPDSF_3801 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3801 IPR004491 Heat shock protein HslU YPDSF_3801 IPR019489 Clp ATPase, C-terminal YPDSF_3802 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase YPDSF_3802 IPR000537 UbiA prenyltransferase family YPDSF_3802 IPR026046 UbiA prenyltransferase domain containing protein 1 YPDSF_3803 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein YPDSF_3803 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily YPDSF_3803 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria YPDSF_3803 IPR010203 Regulator of ribonuclease activity A YPDSF_3807 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPDSF_3807 IPR006144 Secretion protein HlyD, conserved site YPDSF_3808 IPR033838 Colicin V processing peptidase YPDSF_3808 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3808 IPR011527 ABC transporter type 1, transmembrane domain YPDSF_3808 IPR005074 Peptidase C39, bacteriocin processing YPDSF_3808 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPDSF_3808 IPR039421 Type I protein exporter YPDSF_3808 IPR003439 ABC transporter-like YPDSF_3808 IPR003593 AAA+ ATPase domain YPDSF_3808 IPR017871 ABC transporter, conserved site YPDSF_3811 IPR009252 Cell division protein ZapB YPDSF_3812 IPR022357 Major intrinsic protein, conserved site YPDSF_3812 IPR000425 Major intrinsic protein YPDSF_3812 IPR023271 Aquaporin-like YPDSF_3813 IPR000577 Carbohydrate kinase, FGGY YPDSF_3813 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPDSF_3813 IPR018483 Carbohydrate kinase, FGGY, conserved site YPDSF_3813 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPDSF_3813 IPR005999 Glycerol kinase YPDSF_3814 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase YPDSF_3815 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain YPDSF_3815 IPR033892 Ferredoxin--NADP reductase, bacteria YPDSF_3815 IPR017927 FAD-binding domain, ferredoxin reductase-type YPDSF_3815 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPDSF_3815 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPDSF_3815 IPR017938 Riboflavin synthase-like beta-barrel YPDSF_3816 IPR008523 Protein of unknown function DUF805 YPDSF_3817 IPR009918 Protein of unknown function DUF1454 YPDSF_3818 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic YPDSF_3818 IPR020861 Triosephosphate isomerase, active site YPDSF_3818 IPR035990 Triosephosphate isomerase superfamily YPDSF_3818 IPR013785 Aldolase-type TIM barrel YPDSF_3818 IPR000652 Triosephosphate isomerase YPDSF_3819 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_3819 IPR000847 Transcription regulator HTH, LysR YPDSF_3819 IPR005119 LysR, substrate-binding YPDSF_3819 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3820 IPR024078 Putative deacetylase LmbE-like domain superfamily YPDSF_3820 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related YPDSF_3821 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily YPDSF_3821 IPR014165 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase YPDSF_3821 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein YPDSF_3825 IPR005669 Thiosulphate/Sulfate-binding protein YPDSF_3825 IPR034408 Sulphate/thiosulphate-binding site YPDSF_3825 IPR000957 Sulphate/thiosulphate-binding, conserved site YPDSF_3826 IPR015912 Phosphofructokinase, conserved site YPDSF_3826 IPR000023 Phosphofructokinase domain YPDSF_3826 IPR035966 Phosphofructokinase superfamily YPDSF_3826 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic YPDSF_3826 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type YPDSF_3826 IPR022953 ATP-dependent 6-phosphofructokinase YPDSF_3827 IPR036837 Cation efflux protein, cytoplasmic domain superfamily YPDSF_3827 IPR027470 Cation efflux protein, cytoplasmic domain YPDSF_3827 IPR002524 Cation efflux protein YPDSF_3827 IPR027469 Cation efflux transmembrane domain superfamily YPDSF_3827 IPR023783 Cation efflux pump FieF YPDSF_3828 IPR006842 Transposase (putative), YhgA-like YPDSF_3828 IPR010106 Recombination-promoting nuclease RpnA YPDSF_3830 IPR013762 Integrase-like, catalytic domain superfamily YPDSF_3830 IPR002104 Integrase, catalytic domain YPDSF_3830 IPR010998 Integrase/recombinase, N-terminal YPDSF_3830 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPDSF_3830 IPR004107 Integrase, SAM-like, N-terminal YPDSF_3830 IPR023009 Tyrosine recombinase XerC/XerD YPDSF_3830 IPR011931 Tyrosine recombinase XerC YPDSF_3831 IPR012899 LTXXQ motif family protein YPDSF_3832 IPR001789 Signal transduction response regulator, receiver domain YPDSF_3832 IPR011006 CheY-like superfamily YPDSF_3832 IPR001867 OmpR/PhoB-type DNA-binding domain YPDSF_3832 IPR039420 Transcriptional regulatory protein WalR-like YPDSF_3832 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3833 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPDSF_3833 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPDSF_3833 IPR032404 Two-component sensor protein CpxA, periplasmic domain YPDSF_3833 IPR003594 Histidine kinase/HSP90-like ATPase YPDSF_3833 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPDSF_3833 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_3833 IPR003660 HAMP domain YPDSF_3833 IPR005467 Histidine kinase domain YPDSF_3833 IPR038515 CpxA, periplasmic domain superfamily YPDSF_3834 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain YPDSF_3834 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily YPDSF_3834 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3834 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site YPDSF_3834 IPR018062 HTH domain AraC-type, conserved site YPDSF_3834 IPR018060 DNA binding HTH domain, AraC-type YPDSF_3834 IPR009057 Homeobox-like domain superfamily YPDSF_3834 IPR016221 Bifunctional regulatory protein Ada YPDSF_3834 IPR004026 Ada DNA repair, metal-binding YPDSF_3834 IPR035451 Ada-like domain superfamily YPDSF_3834 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain YPDSF_3834 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YPDSF_3835 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPDSF_3835 IPR029028 Alpha/beta knot methyltransferases YPDSF_3835 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase YPDSF_3835 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPDSF_3836 IPR001451 Hexapeptide repeat YPDSF_3836 IPR018357 Hexapeptide transferase, conserved site YPDSF_3836 IPR042122 Serine acetyltransferase, N-terminal domain superfamily YPDSF_3836 IPR005881 Serine O-acetyltransferase YPDSF_3836 IPR011004 Trimeric LpxA-like superfamily YPDSF_3836 IPR010493 Serine acetyltransferase, N-terminal YPDSF_3837 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent YPDSF_3837 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal YPDSF_3837 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal YPDSF_3837 IPR036291 NAD(P)-binding domain superfamily YPDSF_3837 IPR013328 6-phosphogluconate dehydrogenase, domain 2 YPDSF_3837 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily YPDSF_3838 IPR035958 SecB-like superfamily YPDSF_3838 IPR003708 Bacterial protein export chaperone SecB YPDSF_3839 IPR014025 Glutaredoxin subgroup YPDSF_3839 IPR011900 Glutaredoxin, GrxC YPDSF_3839 IPR011767 Glutaredoxin active site YPDSF_3839 IPR036249 Thioredoxin-like superfamily YPDSF_3839 IPR002109 Glutaredoxin YPDSF_3840 IPR036873 Rhodanese-like domain superfamily YPDSF_3840 IPR001763 Rhodanese-like domain YPDSF_3841 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily YPDSF_3841 IPR006124 Metalloenzyme YPDSF_3841 IPR011258 BPG-independent PGAM, N-terminal YPDSF_3841 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent YPDSF_3841 IPR017850 Alkaline-phosphatase-like, core domain superfamily YPDSF_3842 IPR016047 Peptidase M23 YPDSF_3842 IPR011055 Duplicated hybrid motif YPDSF_3843 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPDSF_3843 IPR006837 Divergent polysaccharide deacetylase YPDSF_3844 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPDSF_3844 IPR006837 Divergent polysaccharide deacetylase YPDSF_3845 IPR011032 GroES-like superfamily YPDSF_3845 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site YPDSF_3845 IPR013154 Alcohol dehydrogenase, N-terminal YPDSF_3845 IPR004627 L-threonine 3-dehydrogenase YPDSF_3845 IPR036291 NAD(P)-binding domain superfamily YPDSF_3845 IPR013149 Alcohol dehydrogenase, C-terminal YPDSF_3845 IPR020843 Polyketide synthase, enoylreductase domain YPDSF_3846 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase YPDSF_3846 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site YPDSF_3846 IPR004839 Aminotransferase, class I/classII YPDSF_3846 IPR015424 Pyridoxal phosphate-dependent transferase YPDSF_3846 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 YPDSF_3846 IPR015421 Pyridoxal phosphate-dependent transferase, major domain YPDSF_3847 IPR001509 NAD-dependent epimerase/dehydratase YPDSF_3847 IPR036291 NAD(P)-binding domain superfamily YPDSF_3847 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase YPDSF_3848 IPR002201 Glycosyl transferase, family 9 YPDSF_3848 IPR011910 ADP-heptose--LPS heptosyltransferase 2 YPDSF_3849 IPR011908 Lipopolysaccharide heptosyltransferase I YPDSF_3849 IPR002201 Glycosyl transferase, family 9 YPDSF_3850 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal YPDSF_3850 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily YPDSF_3850 IPR039901 3-deoxy-D-manno-octulosonic acid transferase YPDSF_3851 IPR001173 Glycosyltransferase 2-like YPDSF_3851 IPR029044 Nucleotide-diphospho-sugar transferases YPDSF_3852 IPR004821 Cytidyltransferase-like domain YPDSF_3852 IPR001980 Phosphopantetheine adenylyltransferase YPDSF_3852 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPDSF_3853 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site YPDSF_3853 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding YPDSF_3853 IPR035937 MutM-like, N-terminal YPDSF_3853 IPR010979 Ribosomal protein S13-like, H2TH YPDSF_3853 IPR000214 Zinc finger, DNA glycosylase/AP lyase-type YPDSF_3853 IPR010663 Zinc finger, FPG/IleRS-type YPDSF_3853 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain YPDSF_3853 IPR020629 Formamidopyrimidine-DNA glycosylase YPDSF_3854 IPR001705 Ribosomal protein L33 YPDSF_3854 IPR011332 Zinc-binding ribosomal protein YPDSF_3854 IPR038584 Ribosomal protein L33 superfamily YPDSF_3854 IPR018264 Ribosomal protein L33, conserved site YPDSF_3855 IPR037147 Ribosomal protein L28/L24 superfamily YPDSF_3855 IPR026569 Ribosomal protein L28/L24 YPDSF_3855 IPR001383 Ribosomal protein L28 YPDSF_3855 IPR034704 L28p-like YPDSF_3856 IPR001405 Uncharacterised protein family UPF0758 YPDSF_3856 IPR025657 RadC-like JAB domain YPDSF_3856 IPR010994 RuvA domain 2-like YPDSF_3856 IPR037518 MPN domain YPDSF_3856 IPR020891 Uncharacterised protein family UPF0758, conserved site YPDSF_3856 IPR022820 Uncharacterised protein family UPF0758, YicR subfamily YPDSF_3857 IPR035929 CoaB-like superfamily YPDSF_3857 IPR036551 Flavin prenyltransferase-like YPDSF_3857 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC YPDSF_3857 IPR003382 Flavoprotein YPDSF_3857 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal YPDSF_3858 IPR033704 dUTPase, trimeric YPDSF_3858 IPR029054 dUTPase-like YPDSF_3858 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase YPDSF_3858 IPR036157 dUTPase-like superfamily YPDSF_3859 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPDSF_3859 IPR001647 DNA-binding HTH domain, TetR-type YPDSF_3859 IPR023769 Nucleoid occlusion factor SlmA YPDSF_3859 IPR009057 Homeobox-like domain superfamily YPDSF_3859 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YPDSF_3860 IPR023031 Orotate phosphoribosyltransferase YPDSF_3860 IPR004467 Orotate phosphoribosyl transferase domain YPDSF_3860 IPR000836 Phosphoribosyltransferase domain YPDSF_3860 IPR029057 Phosphoribosyltransferase-like YPDSF_3861 IPR001247 Exoribonuclease, phosphorolytic domain 1 YPDSF_3861 IPR036345 Exoribonuclease, PH domain 2 superfamily YPDSF_3861 IPR015847 Exoribonuclease, phosphorolytic domain 2 YPDSF_3861 IPR020568 Ribosomal protein S5 domain 2-type fold YPDSF_3861 IPR027408 PNPase/RNase PH domain superfamily YPDSF_3861 IPR002381 Ribonuclease PH, bacterial-type YPDSF_3861 IPR018336 Ribonuclease PH, conserved site YPDSF_3862 IPR005229 Conserved hypothetical protein CHP00255 YPDSF_3862 IPR013551 Domain of unknown function DUF1732 YPDSF_3862 IPR013527 YicC-like, N-terminal YPDSF_3863 IPR005115 Uncharacterised domain UPF0126 YPDSF_3864 IPR010994 RuvA domain 2-like YPDSF_3864 IPR004150 NAD-dependent DNA ligase, OB-fold YPDSF_3864 IPR020923 DNA ligase B YPDSF_3864 IPR012340 Nucleic acid-binding, OB-fold YPDSF_3864 IPR013839 NAD-dependent DNA ligase, adenylation YPDSF_3864 IPR013840 NAD-dependent DNA ligase, N-terminal YPDSF_3865 IPR017665 Guanylate kinase YPDSF_3865 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3865 IPR008144 Guanylate kinase-like domain YPDSF_3865 IPR008145 Guanylate kinase/L-type calcium channel beta subunit YPDSF_3865 IPR020590 Guanylate kinase, conserved site YPDSF_3866 IPR036161 RPB6/omega subunit-like superfamily YPDSF_3866 IPR012293 RNA polymerase subunit, RPB6/omega YPDSF_3866 IPR006110 RNA polymerase, subunit omega/K/RPB6 YPDSF_3866 IPR003716 DNA-directed RNA polymerase, omega subunit YPDSF_3867 IPR004811 RelA/SpoT family YPDSF_3867 IPR003607 HD/PDEase domain YPDSF_3867 IPR002912 ACT domain YPDSF_3867 IPR007685 RelA/SpoT YPDSF_3867 IPR004095 TGS YPDSF_3867 IPR012675 Beta-grasp domain superfamily YPDSF_3867 IPR012676 TGS-like YPDSF_3867 IPR033655 RelA, TGS domain YPDSF_3868 IPR022724 RNA methyltransferase, SpoU/TrmH type, C-terminal YPDSF_3868 IPR029028 Alpha/beta knot methyltransferases YPDSF_3868 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPDSF_3868 IPR033671 tRNA (guanosine(18)-2'-O)-methyltransferase YPDSF_3868 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPDSF_3869 IPR011545 DEAD/DEAH box helicase domain YPDSF_3869 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPDSF_3869 IPR033454 RecG, wedge domain YPDSF_3869 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3869 IPR012340 Nucleic acid-binding, OB-fold YPDSF_3869 IPR001650 Helicase, C-terminal YPDSF_3869 IPR004609 ATP-dependent DNA helicase RecG YPDSF_3870 IPR004445 Sodium/glutamate symport carrier protein GltS YPDSF_3871 IPR006043 Xanthine/uracil/vitamin C permease YPDSF_3871 IPR006042 Xanthine/uracil permease YPDSF_3872 IPR007844 AsmA YPDSF_3873 IPR029069 HotDog domain superfamily YPDSF_3873 IPR000182 GNAT domain YPDSF_3873 IPR016181 Acyl-CoA N-acyltransferase YPDSF_3873 IPR012660 Thioesterase, putative YPDSF_3874 IPR036397 Ribonuclease H superfamily YPDSF_3874 IPR012337 Ribonuclease H-like superfamily YPDSF_3874 IPR006120 Resolvase, HTH domain YPDSF_3874 IPR017894 HTH domain, IS21 transposase-type YPDSF_3874 IPR001584 Integrase, catalytic core YPDSF_3875 IPR001270 ClpA/B family YPDSF_3875 IPR003593 AAA+ ATPase domain YPDSF_3875 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3875 IPR002611 IstB-like ATP-binding protein YPDSF_3875 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_3876 IPR003732 D-aminoacyl-tRNA deacylase DTD YPDSF_3876 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily YPDSF_3877 IPR023679 Uncharacterised protein family UPF0761, bacterial YPDSF_3877 IPR017039 Virulence factor BrkB YPDSF_3878 IPR041492 Haloacid dehalogenase-like hydrolase YPDSF_3878 IPR023214 HAD superfamily YPDSF_3878 IPR036412 HAD-like superfamily YPDSF_3878 IPR006439 HAD hydrolase, subfamily IA YPDSF_3878 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPDSF_3880 IPR027303 Glutamine synthetase, glycine-rich site YPDSF_3880 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain YPDSF_3880 IPR036651 Glutamine synthetase, N-terminal domain superfamily YPDSF_3880 IPR008147 Glutamine synthetase, beta-Grasp domain YPDSF_3880 IPR008146 Glutamine synthetase, catalytic domain YPDSF_3880 IPR027302 Glutamine synthetase, N-terminal conserved site YPDSF_3880 IPR001637 Glutamine synthetase class-I, adenylation site YPDSF_3880 IPR004809 Glutamine synthetase type I YPDSF_3881 IPR003594 Histidine kinase/HSP90-like ATPase YPDSF_3881 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPDSF_3881 IPR000014 PAS domain YPDSF_3881 IPR005467 Histidine kinase domain YPDSF_3881 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain YPDSF_3881 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily YPDSF_3881 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPDSF_3881 IPR013767 PAS fold YPDSF_3881 IPR035965 PAS domain superfamily YPDSF_3882 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPDSF_3882 IPR003593 AAA+ ATPase domain YPDSF_3882 IPR010114 DNA-binding transcriptional regulator NtrC YPDSF_3882 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPDSF_3882 IPR002078 RNA polymerase sigma factor 54 interaction domain YPDSF_3882 IPR001789 Signal transduction response regulator, receiver domain YPDSF_3882 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3882 IPR025944 Sigma-54 interaction domain, conserved site YPDSF_3882 IPR002197 DNA binding HTH domain, Fis-type YPDSF_3882 IPR009057 Homeobox-like domain superfamily YPDSF_3882 IPR011006 CheY-like superfamily YPDSF_3883 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN YPDSF_3883 IPR007197 Radical SAM YPDSF_3883 IPR010723 HemN, C-terminal YPDSF_3883 IPR006638 Elp3/MiaB/NifB YPDSF_3883 IPR023404 Radical SAM, alpha/beta horseshoe YPDSF_3883 IPR034505 Anaerobic coproporphyrinogen-III oxidase YPDSF_3884 IPR007336 Der GTPase activator YPDSF_3885 IPR030393 EngB-type guanine nucleotide-binding (G) domain YPDSF_3885 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC YPDSF_3885 IPR006073 GTP binding domain YPDSF_3885 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3886 IPR036279 5'-3' exonuclease, C-terminal domain superfamily YPDSF_3886 IPR019760 DNA-directed DNA polymerase, family A, conserved site YPDSF_3886 IPR036397 Ribonuclease H superfamily YPDSF_3886 IPR001098 DNA-directed DNA polymerase, family A, palm domain YPDSF_3886 IPR020045 DNA polymerase I-like, H3TH domain YPDSF_3886 IPR018320 DNA polymerase 1 YPDSF_3886 IPR002298 DNA polymerase A YPDSF_3886 IPR008918 Helix-hairpin-helix motif, class 2 YPDSF_3886 IPR029060 PIN-like domain superfamily YPDSF_3886 IPR002421 5'-3' exonuclease, N-terminal YPDSF_3886 IPR012337 Ribonuclease H-like superfamily YPDSF_3886 IPR002562 3'-5' exonuclease domain YPDSF_3886 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal YPDSF_3887 IPR013766 Thioredoxin domain YPDSF_3887 IPR036249 Thioredoxin-like superfamily YPDSF_3887 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL YPDSF_3887 IPR001853 DSBA-like thioredoxin domain YPDSF_3887 IPR017937 Thioredoxin, conserved site YPDSF_3888 IPR011009 Protein kinase-like domain superfamily YPDSF_3888 IPR032882 SrkA/RdoA protein kinase YPDSF_3888 IPR002575 Aminoglycoside phosphotransferase YPDSF_3889 IPR009383 Protein of unknown function DUF1040 YPDSF_3889 IPR038134 YihD-like superfamily YPDSF_3890 IPR013482 Molybdenum cofactor guanylyltransferase YPDSF_3890 IPR029044 Nucleotide-diphospho-sugar transferases YPDSF_3890 IPR025877 MobA-like NTP transferase YPDSF_3891 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain YPDSF_3891 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3892 IPR001207 Transposase, mutator type YPDSF_3893 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3893 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_3893 IPR008920 Transcription regulator FadR/GntR, C-terminal YPDSF_3893 IPR011711 GntR, C-terminal YPDSF_3893 IPR000524 Transcription regulator HTH, GntR YPDSF_3894 IPR004638 Drug resistance transporter EmrB-like YPDSF_3894 IPR011701 Major facilitator superfamily YPDSF_3894 IPR020846 Major facilitator superfamily domain YPDSF_3894 IPR036259 MFS transporter superfamily YPDSF_3898 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU YPDSF_3898 IPR023750 RbsD-like superfamily YPDSF_3898 IPR023064 D-ribose pyranase YPDSF_3899 IPR003855 Potassium transporter YPDSF_3899 IPR023051 Potassium uptake protein, low affinity, Kup YPDSF_3900 IPR011704 ATPase, dynein-related, AAA domain YPDSF_3900 IPR003593 AAA+ ATPase domain YPDSF_3900 IPR023671 ATPase RavA YPDSF_3900 IPR041538 ATPase RavA-like, AAA lid domain YPDSF_3900 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3900 IPR022547 ATPase, RavA, C-terminal YPDSF_3901 IPR008912 Uncharacterised protein family CoxE-like YPDSF_3901 IPR023481 Uncharacterised protein family ViaA YPDSF_3901 IPR002035 von Willebrand factor, type A YPDSF_3901 IPR036465 von Willebrand factor A-like domain superfamily YPDSF_3902 IPR006195 Aminoacyl-tRNA synthetase, class II YPDSF_3902 IPR004618 Aspartate--ammonia ligase YPDSF_3903 IPR019888 Transcription regulator AsnC-type YPDSF_3903 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YPDSF_3903 IPR036388 Winged helix-like DNA-binding domain superfamily YPDSF_3903 IPR019885 Transcription regulator HTH, AsnC-type, conserved site YPDSF_3903 IPR036390 Winged helix DNA-binding domain superfamily YPDSF_3903 IPR011008 Dimeric alpha-beta barrel YPDSF_3903 IPR000485 AsnC-type HTH domain YPDSF_3903 IPR011991 ArsR-like helix-turn-helix domain YPDSF_3904 IPR008254 Flavodoxin/nitric oxide synthase YPDSF_3904 IPR029039 Flavoprotein-like superfamily YPDSF_3905 IPR020595 MnmG-related, conserved site YPDSF_3905 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG YPDSF_3905 IPR026904 GidA associated domain 3 YPDSF_3905 IPR036188 FAD/NAD(P)-binding domain superfamily YPDSF_3905 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related YPDSF_3906 IPR003682 rRNA small subunit methyltransferase G YPDSF_3906 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_3907 IPR005598 ATP synthase protein I YPDSF_3908 IPR000568 ATP synthase, F0 complex, subunit A YPDSF_3908 IPR035908 ATP synthase, F0 complex, subunit A superfamily YPDSF_3908 IPR023011 ATP synthase, F0 complex, subunit A, active site YPDSF_3909 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site YPDSF_3909 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast YPDSF_3909 IPR035921 F/V-ATP synthase subunit C superfamily YPDSF_3909 IPR000454 ATP synthase, F0 complex, subunit C YPDSF_3909 IPR038662 F1F0 ATP synthase subunit C superfamily YPDSF_3909 IPR002379 V-ATPase proteolipid subunit C-like domain YPDSF_3910 IPR005864 ATP synthase, F0 complex, subunit b, bacterial YPDSF_3910 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast YPDSF_3910 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily YPDSF_3911 IPR020781 ATPase, OSCP/delta subunit, conserved site YPDSF_3911 IPR000711 ATPase, OSCP/delta subunit YPDSF_3911 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily YPDSF_3912 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily YPDSF_3912 IPR033732 ATP synthase, F1 complex, alpha subunit nucleotide-binding domain YPDSF_3912 IPR000793 ATP synthase, alpha subunit, C-terminal YPDSF_3912 IPR005294 ATP synthase, F1 complex, alpha subunit YPDSF_3912 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPDSF_3912 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3912 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPDSF_3912 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain YPDSF_3912 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily YPDSF_3912 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily YPDSF_3913 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site YPDSF_3913 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily YPDSF_3913 IPR000131 ATP synthase, F1 complex, gamma subunit YPDSF_3914 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPDSF_3914 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal YPDSF_3914 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3914 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily YPDSF_3914 IPR003593 AAA+ ATPase domain YPDSF_3914 IPR005722 ATP synthase, F1 complex, beta subunit YPDSF_3914 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain YPDSF_3914 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPDSF_3915 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal YPDSF_3915 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain YPDSF_3915 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal YPDSF_3915 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit YPDSF_3915 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily YPDSF_3916 IPR038009 GlmU, C-terminal LbH domain YPDSF_3916 IPR025877 MobA-like NTP transferase YPDSF_3916 IPR011004 Trimeric LpxA-like superfamily YPDSF_3916 IPR029044 Nucleotide-diphospho-sugar transferases YPDSF_3916 IPR001451 Hexapeptide repeat YPDSF_3916 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase YPDSF_3916 IPR018357 Hexapeptide transferase, conserved site YPDSF_3917 IPR001347 Sugar isomerase (SIS) YPDSF_3917 IPR035490 GlmS/FrlB, SIS domain 2 YPDSF_3917 IPR017932 Glutamine amidotransferase type 2 domain YPDSF_3917 IPR035466 GlmS/AgaS, SIS domain 1 YPDSF_3917 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising YPDSF_3917 IPR029055 Nucleophile aminohydrolases, N-terminal YPDSF_3918 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS YPDSF_3918 IPR024370 PBP domain YPDSF_3919 IPR011864 Phosphate ABC transporter, permease protein PstC YPDSF_3919 IPR035906 MetI-like superfamily YPDSF_3919 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_3920 IPR035906 MetI-like superfamily YPDSF_3920 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_3920 IPR005672 Phosphate transport system permease protein PstA YPDSF_3921 IPR015850 ABC transporter, phosphate import, PstB YPDSF_3921 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3921 IPR017871 ABC transporter, conserved site YPDSF_3921 IPR003439 ABC transporter-like YPDSF_3921 IPR003593 AAA+ ATPase domain YPDSF_3921 IPR005670 Phosphate transport system permease protein 1 YPDSF_3922 IPR026022 PhoU domain YPDSF_3922 IPR028366 Phosphate transport system protein PhoU YPDSF_3922 IPR038078 PhoU-like domain superfamily YPDSF_3924 IPR018313 Solute-binding protein family 3, conserved site YPDSF_3924 IPR001320 Ionotropic glutamate receptor YPDSF_3924 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPDSF_3924 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter YPDSF_3925 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPDSF_3925 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_3925 IPR035906 MetI-like superfamily YPDSF_3926 IPR000515 ABC transporter type 1, transmembrane domain MetI-like YPDSF_3926 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain YPDSF_3926 IPR035906 MetI-like superfamily YPDSF_3927 IPR023214 HAD superfamily YPDSF_3927 IPR006439 HAD hydrolase, subfamily IA YPDSF_3927 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPDSF_3927 IPR036412 HAD-like superfamily YPDSF_3927 IPR041492 Haloacid dehalogenase-like hydrolase YPDSF_3928 IPR026033 Azaguanine-like transporters YPDSF_3928 IPR006043 Xanthine/uracil/vitamin C permease YPDSF_3930 IPR024906 Enoyl reductase FAD binding domain YPDSF_3930 IPR010758 Trans-2-enoyl-CoA reductase YPDSF_3930 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative YPDSF_3931 IPR005225 Small GTP-binding protein domain YPDSF_3931 IPR031168 TrmE-type guanine nucleotide-binding domain YPDSF_3931 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3931 IPR018948 GTP-binding protein TrmE, N-terminal YPDSF_3931 IPR004520 tRNA modification GTPase MnmE YPDSF_3931 IPR006073 GTP binding domain YPDSF_3931 IPR025867 MnmE, helical domain YPDSF_3931 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 YPDSF_3931 IPR027368 tRNA modification GTPase MnmE domain 2 YPDSF_3932 IPR038221 YidC, periplasmic domain superfamily YPDSF_3932 IPR038210 Membrane insertase YidC, periplasmic domain YPDSF_3932 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 YPDSF_3932 IPR028053 Membrane insertase YidC, N-terminal YPDSF_3932 IPR028055 Membrane insertase YidC/Oxa1, C-terminal YPDSF_3932 IPR019998 Membrane insertase YidC YPDSF_3933 IPR002696 Putative membrane protein insertion efficiency factor YPDSF_3934 IPR000100 Ribonuclease P YPDSF_3934 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPDSF_3934 IPR020568 Ribosomal protein S5 domain 2-type fold YPDSF_3934 IPR020539 Ribonuclease P, conserved site YPDSF_3935 IPR020939 Ribosomal protein L34, conserved site YPDSF_3935 IPR000271 Ribosomal protein L34 YPDSF_3939 IPR019661 Replication regulatory protein RepA2 YPDSF_3941 IPR003446 Plasmid replication initiation, RepA YPDSF_3941 IPR017837 Plasmid replication initiator, RepA, IncFII type YPDSF_3944 IPR019093 Rac1-binding domain YPDSF_3944 IPR000719 Protein kinase domain YPDSF_3944 IPR011009 Protein kinase-like domain superfamily YPDSF_3944 IPR008271 Serine/threonine-protein kinase, active site YPDSF_3944 IPR003547 Serine/threonine protein kinase, yersinia-type YPDSF_3947 IPR012337 Ribonuclease H-like superfamily YPDSF_3947 IPR036397 Ribonuclease H superfamily YPDSF_3947 IPR001584 Integrase, catalytic core YPDSF_3947 IPR025948 HTH-like domain YPDSF_3948 IPR024474 Zinc-finger binding domain of transposase IS66 YPDSF_3948 IPR039552 Transposase IS66, C-terminal YPDSF_3948 IPR004291 Transposase, IS66 YPDSF_3948 IPR024463 Transposase TnpC, homeodomain YPDSF_3949 IPR036484 Protein-tyrosine phosphatase, YopH, N-terminal domain superfamily YPDSF_3949 IPR000242 PTP type protein phosphatase YPDSF_3949 IPR015103 Protein-tyrosine phosphatase, YopH, N-terminal YPDSF_3949 IPR029021 Protein-tyrosine phosphatase-like YPDSF_3949 IPR016130 Protein-tyrosine phosphatase, active site YPDSF_3949 IPR003595 Protein-tyrosine phosphatase, catalytic YPDSF_3949 IPR003546 Type III secreted modular tyrosine phosphatase, SptP/YopH YPDSF_3949 IPR000387 Tyrosine specific protein phosphatases domain YPDSF_3951 IPR001584 Integrase, catalytic core YPDSF_3951 IPR012337 Ribonuclease H-like superfamily YPDSF_3951 IPR025948 HTH-like domain YPDSF_3951 IPR036397 Ribonuclease H superfamily YPDSF_3952 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3952 IPR002611 IstB-like ATP-binding protein YPDSF_3952 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_3952 IPR003593 AAA+ ATPase domain YPDSF_3952 IPR001270 ClpA/B family YPDSF_3953 IPR006120 Resolvase, HTH domain YPDSF_3953 IPR001584 Integrase, catalytic core YPDSF_3953 IPR017894 HTH domain, IS21 transposase-type YPDSF_3953 IPR036397 Ribonuclease H superfamily YPDSF_3953 IPR012337 Ribonuclease H-like superfamily YPDSF_3956 IPR002514 Transposase IS3/IS911family YPDSF_3956 IPR009057 Homeobox-like domain superfamily YPDSF_3957 IPR015103 Protein-tyrosine phosphatase, YopH, N-terminal YPDSF_3957 IPR036484 Protein-tyrosine phosphatase, YopH, N-terminal domain superfamily YPDSF_3958 IPR012842 Type III secretion system HrpE/YscL YPDSF_3958 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE YPDSF_3959 IPR009510 Type III secretion system, secretion protein K YPDSF_3960 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ YPDSF_3960 IPR006182 Secretory protein YscJ/FliF YPDSF_3961 IPR012670 Type III secretion system, YscI/HrpB YPDSF_3962 IPR041814 Type III secretion system virulence factor YopR, core domain YPDSF_3962 IPR013349 Type III secretion system effector YopR YPDSF_3963 IPR011990 Tetratricopeptide-like helical domain superfamily YPDSF_3963 IPR013348 Type III secretion system YscG YPDSF_3964 IPR037203 Type III secretion, needle-protein-like superfamily YPDSF_3964 IPR011841 Type III secretion system, needle protein YPDSF_3964 IPR021123 Type III secretion, needle-protein-like YPDSF_3965 IPR012671 Type III secretion system, secretion protein E YPDSF_3966 IPR032030 YscD, cytoplasmic domain YPDSF_3966 IPR012843 Type III secretion system YscD/HrpQ YPDSF_3966 IPR008984 SMAD/FHA domain superfamily YPDSF_3966 IPR000253 Forkhead-associated (FHA) domain YPDSF_3966 IPR032034 Yop protein translocation protein D, periplasmic domain YPDSF_3968 IPR013353 Type III secretion system chaperone YscB YPDSF_3968 IPR010261 Tir chaperone protein (CesT) family YPDSF_3969 IPR003313 AraC-type arabinose-binding/dimerisation domain YPDSF_3969 IPR018060 DNA binding HTH domain, AraC-type YPDSF_3969 IPR037923 Transcription regulator HTH-like YPDSF_3969 IPR020449 Transcription regulator HTH, AraC- type YPDSF_3969 IPR018062 HTH domain AraC-type, conserved site YPDSF_3969 IPR009057 Homeobox-like domain superfamily YPDSF_3970 IPR006307 Type III exporter system, secretion apparatus protein BsaZ YPDSF_3970 IPR006135 Type III secretion system substrate exporter YPDSF_3970 IPR029025 Type III secretion system substrate exporter, C-terminal YPDSF_3971 IPR002010 Type III secretion system inner membrane R protein YPDSF_3971 IPR006304 Type III secretion protein SpaR/YscT YPDSF_3972 IPR006306 Type III secretion protein HrpO YPDSF_3972 IPR002191 Bacterial export protein family 3 YPDSF_3973 IPR005838 Type III secretion system inner membrane P protein YPDSF_3973 IPR005773 Yop virulence translocation protein R YPDSF_3974 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO YPDSF_3974 IPR003283 Type III secretion system outer membrane, SpaO YPDSF_3974 IPR036429 SpoA-like superfamily YPDSF_3974 IPR001543 Surface presentation of antigen (SpoA) YPDSF_3975 IPR021136 Flagellar hook-length control protein-like, C-terminal YPDSF_3975 IPR013354 Type III secretion system needle length determinant, C-terminal domain YPDSF_3976 IPR009929 Type III secretion sytem,YscO YPDSF_3977 IPR003593 AAA+ ATPase domain YPDSF_3977 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_3977 IPR013380 ATPase, type III secretion system, H+-transporting YPDSF_3977 IPR005714 ATPase, type III secretion system, FliI/YscN YPDSF_3977 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPDSF_3977 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain YPDSF_3977 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPDSF_3977 IPR040627 T3SS EscN ATPase, C-terminal YPDSF_3978 IPR010812 Hypersensitivity response secretion-like, HrpJ YPDSF_3978 IPR013401 Type III secretion regulator, YopN/LcrE/InvE/MxiC YPDSF_3979 IPR015144 Type III secretion system effector delivery regulator TyeA YPDSF_3979 IPR013351 Type III secretion system effector delivery regulator TyeA-related YPDSF_3979 IPR038347 TyeA superfamily YPDSF_3980 IPR012673 Type III secretion system chaperone SycN YPDSF_3981 IPR012672 Type III secretion system YscX YPDSF_3982 IPR016684 Type III secretion system chaperone, YscY YPDSF_3982 IPR011990 Tetratricopeptide-like helical domain superfamily YPDSF_3983 IPR006302 Type III secretion protein HrcV YPDSF_3983 IPR001712 Type III secretion system FHIPEP YPDSF_3983 IPR042194 FHIPEP, domain 1 YPDSF_3983 IPR025505 FHIPEP conserved site YPDSF_3983 IPR042196 FHIPEP, domain 4 YPDSF_3983 IPR042193 FHIPEP, domain 3 YPDSF_3984 IPR022797 Type III secretion system regulator LcrR/Chaperone CesD2 YPDSF_3984 IPR013405 Type III secretion system regulator, LcrR YPDSF_3985 IPR009863 Type III secretion protein, LcrG YPDSF_3986 IPR005413 Low calcium response V antigen YPDSF_3986 IPR036139 Virulence-associated V antigen superfamily YPDSF_3987 IPR013026 Tetratricopeptide repeat-containing domain YPDSF_3987 IPR011990 Tetratricopeptide-like helical domain superfamily YPDSF_3987 IPR011716 Tetratricopeptide TPR-3 YPDSF_3987 IPR016379 Type III secretion system, low calcium response, chaperone LcrH/SycD, subgroup YPDSF_3987 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD YPDSF_3988 IPR006972 Secretion system effector C, SseC-like YPDSF_3989 IPR008898 YopD-like YPDSF_3990 IPR001207 Transposase, mutator type YPDSF_3996 IPR032675 Leucine-rich repeat domain superfamily YPDSF_3996 IPR032674 LRR-containing bacterial E3 ligase, N-terminal YPDSF_3996 IPR001611 Leucine-rich repeat YPDSF_4000 IPR010261 Tir chaperone protein (CesT) family YPDSF_4001 IPR003951 Peptidase C58, Yersinia/Haemophilus virulence surface antigen YPDSF_4001 IPR038765 Papain-like cysteine peptidase superfamily YPDSF_4001 IPR006473 Peptidase C58, YopT-type domain YPDSF_4003 IPR008874 Enterobacterial TraT complement resistance YPDSF_4005 IPR036397 Ribonuclease H superfamily YPDSF_4005 IPR012337 Ribonuclease H-like superfamily YPDSF_4005 IPR025948 HTH-like domain YPDSF_4005 IPR001584 Integrase, catalytic core YPDSF_4006 IPR012337 Ribonuclease H-like superfamily YPDSF_4008 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_4008 IPR025669 AAA domain YPDSF_4009 IPR036086 ParB/Sulfiredoxin superfamily YPDSF_4009 IPR040873 SopB, HTH domain YPDSF_4009 IPR003115 ParB/Sulfiredoxin YPDSF_4009 IPR004437 ParB/RepB/Spo0J partition protein YPDSF_4011 IPR038296 Antitoxin ParD superfamily YPDSF_4011 IPR022789 Antitoxin ParD YPDSF_4011 IPR010985 Ribbon-helix-helix YPDSF_4013 IPR015110 YopE, N-terminal domain YPDSF_4013 IPR037168 Virulence factor YopE, GAP domain superfamily YPDSF_4013 IPR014773 Virulence factor YopE, GAP domain YPDSF_4013 IPR003537 Yersinia virulence determinant YopE YPDSF_4014 IPR005416 Type III secretion chaperone SycE YPDSF_4014 IPR010261 Tir chaperone protein (CesT) family YPDSF_4015 IPR012337 Ribonuclease H-like superfamily YPDSF_4015 IPR036397 Ribonuclease H superfamily YPDSF_4015 IPR025948 HTH-like domain YPDSF_4015 IPR001584 Integrase, catalytic core YPDSF_4016 IPR001584 Integrase, catalytic core YPDSF_4016 IPR012337 Ribonuclease H-like superfamily YPDSF_4016 IPR017894 HTH domain, IS21 transposase-type YPDSF_4017 IPR001270 ClpA/B family YPDSF_4017 IPR002611 IstB-like ATP-binding protein YPDSF_4017 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_4017 IPR003593 AAA+ ATPase domain YPDSF_4017 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_4019 IPR025948 HTH-like domain YPDSF_4019 IPR036397 Ribonuclease H superfamily YPDSF_4019 IPR012337 Ribonuclease H-like superfamily YPDSF_4019 IPR001584 Integrase, catalytic core YPDSF_4020 IPR009057 Homeobox-like domain superfamily YPDSF_4020 IPR002514 Transposase IS3/IS911family YPDSF_4021 IPR009057 Homeobox-like domain superfamily YPDSF_4021 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily YPDSF_4021 IPR006119 Resolvase, N-terminal catalytic domain YPDSF_4021 IPR006118 Recombinase, conserved site YPDSF_4021 IPR006120 Resolvase, HTH domain YPDSF_4022 IPR025296 Domain of unknown function DUF4158 YPDSF_4022 IPR002513 Tn3 transposase DDE domain YPDSF_4024 IPR005594 YadA-like, C-terminal YPDSF_4024 IPR008126 Outer membrane adhesion, Yersinia YPDSF_4024 IPR011049 Serralysin-like metalloprotease, C-terminal YPDSF_4024 IPR008640 Head domain of trimeric autotransporter adhesin YPDSF_4024 IPR008635 Coiled stalk of trimeric autotransporter adhesin YPDSF_4027 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_4027 IPR009767 DNA helicase, TraI type YPDSF_4027 IPR040987 TraI, N-terminal subdomain YPDSF_4027 IPR014059 Conjugative relaxase, N-terminal YPDSF_4027 IPR014862 TrwC relaxase YPDSF_4027 IPR014129 Conjugative transfer relaxase protein TraI YPDSF_4027 IPR040668 TraI, 2B/2B-like domain YPDSF_4029 IPR006120 Resolvase, HTH domain YPDSF_4029 IPR012337 Ribonuclease H-like superfamily YPDSF_4029 IPR017894 HTH domain, IS21 transposase-type YPDSF_4029 IPR001584 Integrase, catalytic core YPDSF_4029 IPR036397 Ribonuclease H superfamily YPDSF_4030 IPR001270 ClpA/B family YPDSF_4030 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPDSF_4030 IPR002611 IstB-like ATP-binding protein YPDSF_4030 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_4030 IPR003593 AAA+ ATPase domain YPDSF_4031 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly YPDSF_4032 IPR037053 Phage tail collar domain superfamily YPDSF_4032 IPR011083 Phage tail collar domain YPDSF_4032 IPR005003 Bacteriophage lambda, Stf, side tail fibre-repeat-1 YPDSF_4032 IPR008969 Carboxypeptidase-like, regulatory domain superfamily YPDSF_4032 IPR008969 Carboxypeptidase-like, regulatory domain superfamily YPDSF_4032 IPR037053 Phage tail collar domain superfamily YPDSF_4032 IPR011083 Phage tail collar domain YPDSF_4032 IPR005003 Bacteriophage lambda, Stf, side tail fibre-repeat-1 YPDSF_4032 IPR013609 Bacteriophage 933W, L0121, tail fibre, N-terminal YPDSF_4032 IPR013609 Bacteriophage 933W, L0121, tail fibre, N-terminal YPDSF_4039 IPR013491 Caudovirus, tape measure, N-terminal YPDSF_4057 IPR039421 Type I protein exporter YPDSF_4057 IPR039395 Peptidase C39-like A YPDSF_4057 IPR005074 Peptidase C39, bacteriocin processing YPDSF_4057 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_4057 IPR010132 ATPase, type I secretion system, HlyB YPDSF_4057 IPR017871 ABC transporter, conserved site YPDSF_4057 IPR011527 ABC transporter type 1, transmembrane domain YPDSF_4057 IPR003439 ABC transporter-like YPDSF_4057 IPR036640 ABC transporter type 1, transmembrane domain superfamily YPDSF_4057 IPR003593 AAA+ ATPase domain YPDSF_4058 IPR004437 ParB/RepB/Spo0J partition protein YPDSF_4058 IPR036086 ParB/Sulfiredoxin superfamily YPDSF_4058 IPR041468 ParB/Spo0J, HTH domain YPDSF_4058 IPR003115 ParB/Sulfiredoxin YPDSF_4059 IPR003115 ParB/Sulfiredoxin YPDSF_4059 IPR036086 ParB/Sulfiredoxin superfamily YPDSF_4059 IPR004437 ParB/RepB/Spo0J partition protein YPDSF_4059 IPR041468 ParB/Spo0J, HTH domain YPDSF_4060 IPR033454 RecG, wedge domain YPDSF_4060 IPR004609 ATP-dependent DNA helicase RecG YPDSF_4060 IPR011545 DEAD/DEAH box helicase domain YPDSF_4060 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPDSF_4060 IPR001650 Helicase, C-terminal YPDSF_4060 IPR012340 Nucleic acid-binding, OB-fold YPDSF_4060 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_4068 IPR036515 Transposase IS200-like superfamily YPDSF_4068 IPR002686 Transposase IS200-like YPDSF_4070 IPR009078 Ferritin-like superfamily YPDSF_4070 IPR012348 Ribonucleotide reductase-like YPDSF_4070 IPR033909 Ribonucleotide reductase small subunit YPDSF_4070 IPR030475 Ribonucleotide reductase small subunit, acitve site YPDSF_4070 IPR000358 Ribonucleotide reductase small subunit family YPDSF_4071 IPR039718 Ribonucleoside-diphosphate reductase large subunit YPDSF_4071 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal YPDSF_4071 IPR013509 Ribonucleotide reductase large subunit, N-terminal YPDSF_4071 IPR000788 Ribonucleotide reductase large subunit, C-terminal YPDSF_4071 IPR013346 Ribonucleotide reductase, class I , alpha subunit YPDSF_4071 IPR005144 ATP-cone domain YPDSF_4077 IPR000525 Initiator Rep protein YPDSF_4084 IPR003593 AAA+ ATPase domain YPDSF_4084 IPR013765 DNA recombination and repair protein RecA YPDSF_4084 IPR020584 DNA recombination/repair protein RecA, conserved site YPDSF_4084 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_4084 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain YPDSF_4084 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface YPDSF_4084 IPR023400 DNA recombination and repair protein RecA, C-terminal YPDSF_4086 IPR008918 Helix-hairpin-helix motif, class 2 YPDSF_4086 IPR038969 Flap endonuclease YPDSF_4086 IPR020045 DNA polymerase I-like, H3TH domain YPDSF_4086 IPR036279 5'-3' exonuclease, C-terminal domain superfamily YPDSF_4086 IPR002421 5'-3' exonuclease, N-terminal YPDSF_4086 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal YPDSF_4086 IPR029060 PIN-like domain superfamily YPDSF_4091 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain YPDSF_4091 IPR004805 DNA polymerase III, alpha subunit YPDSF_4091 IPR003141 Polymerase/histidinol phosphatase, N-terminal YPDSF_4091 IPR004013 PHP domain YPDSF_4091 IPR029460 DNA polymerase, helix-hairpin-helix motif YPDSF_4091 IPR040982 DNA polymerase III alpha subunit finger domain YPDSF_4091 IPR036895 Uracil-DNA glycosylase-like domain superfamily YPDSF_4093 IPR036465 von Willebrand factor A-like domain superfamily YPDSF_4093 IPR002035 von Willebrand factor, type A YPDSF_4093 IPR025861 Cobalamin biosynthesis protein CobT VWA domain YPDSF_4093 IPR006538 Cobalt chelatase, CobT subunit YPDSF_4097 IPR037224 PapC, N-terminal domain superfamily YPDSF_4097 IPR025885 PapC, N-terminal domain YPDSF_4097 IPR000015 Outer membrane usher protein YPDSF_4097 IPR042186 Outer membrane usher protein FimD, plug domain YPDSF_4097 IPR018030 Fimbrial membrane usher, conserved site YPDSF_4097 IPR025949 PapC-like, C-terminal domain YPDSF_4098 IPR016148 Pili assembly chaperone, C-terminal YPDSF_4098 IPR013783 Immunoglobulin-like fold YPDSF_4098 IPR008962 PapD-like superfamily YPDSF_4098 IPR018046 Pili assembly chaperone, conserved site YPDSF_4098 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPDSF_4098 IPR001829 Pili assembly chaperone, bacterial YPDSF_4098 IPR016147 Pili assembly chaperone, N-terminal YPDSF_4104 IPR001207 Transposase, mutator type YPDSF_4105 IPR012931 TraG-like, N-terminal YPDSF_4106 IPR010927 Type IV conjugative transfer system protein TraH YPDSF_4107 IPR039555 F plasmid transfer operon protein YPDSF_4107 IPR036249 Thioredoxin-like superfamily YPDSF_4107 IPR013766 Thioredoxin domain YPDSF_4107 IPR014109 Type-F conjugative transfer system pilin assembly thiol-disulphide isomerase TrbB YPDSF_4108 IPR014112 Type-F conjugative transfer system pilin chaperone TraQ YPDSF_4109 IPR039555 F plasmid transfer operon protein YPDSF_4109 IPR014110 Type-F conjugative transfer system pilin assembly protein TraF YPDSF_4110 IPR014121 Type-F conjugative transfer system mating-pair stabilisation protein TraN YPDSF_4111 IPR014113 Type-F conjugative transfer system pilin assembly protein TrbC, subgroup YPDSF_4111 IPR019106 Type-F conjugative transfer system pilin assembly protein TrbC YPDSF_4112 IPR009649 TraU YPDSF_4113 IPR025864 Type-F conjugative transfer system protein TraW N-terminal domain YPDSF_4113 IPR014114 Type-F conjugative transfer system protein TraW YPDSF_4114 IPR014115 Type-F conjugative transfer system protein TrbI YPDSF_4115 IPR025955 Type-IV secretion system protein TraC/Conjugative transfer ATPase YPDSF_4115 IPR014117 Type-IV secretion system protein TraC YPDSF_4115 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_4117 IPR014118 Type IV conjugative transfer system protein TraV YPDSF_4118 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI YPDSF_4119 IPR010563 Pilus assembly TraK YPDSF_4119 IPR014126 Type-F conjugative transfer system secretin TraK YPDSF_4120 IPR007973 Pilus assembly TraE YPDSF_4121 IPR016382 Pilus assembly, TraL YPDSF_4121 IPR009838 Type IV conjugative transfer system, protein TraL YPDSF_4122 IPR008873 TraA YPDSF_4123 IPR001207 Transposase, mutator type YPDSF_4124 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_4124 IPR019476 Type IV secretion system coupling protein TraD, DNA-binding domain YPDSF_4124 IPR022585 TraD coupling protein, N-terminal YPDSF_4124 IPR014128 Type IV conjugative transfer system, coupling protein TraD YPDSF_4125 IPR014059 Conjugative relaxase, N-terminal YPDSF_4125 IPR014862 TrwC relaxase YPDSF_4125 IPR040987 TraI, N-terminal subdomain YPDSF_4125 IPR040668 TraI, 2B/2B-like domain YPDSF_4125 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_4125 IPR009767 DNA helicase, TraI type YPDSF_4125 IPR014129 Conjugative transfer relaxase protein TraI YPDSF_4126 IPR008875 TraX YPDSF_4126 IPR014125 Type-F conjugative transfer system pilin acetylase TraX YPDSF_4128 IPR004670 Na+/H+ antiporter NhaA YPDSF_4128 IPR012336 Thioredoxin-like fold YPDSF_4128 IPR036249 Thioredoxin-like superfamily YPDSF_4128 IPR023171 Na/H antiporter domain superfamily YPDSF_4128 IPR013766 Thioredoxin domain YPDSF_4130 IPR003446 Plasmid replication initiation, RepA YPDSF_4130 IPR017837 Plasmid replication initiator, RepA, IncFII type YPDSF_4131 IPR003346 Transposase, IS116/IS110/IS902 YPDSF_4131 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal YPDSF_4132 IPR006842 Transposase (putative), YhgA-like YPDSF_4132 IPR010106 Recombination-promoting nuclease RpnA YPDSF_4133 IPR000477 Reverse transcriptase domain YPDSF_4135 IPR001736 Phospholipase D/Transphosphatidylase YPDSF_4135 IPR025202 Phospholipase D-like domain YPDSF_4137 IPR006842 Transposase (putative), YhgA-like YPDSF_4137 IPR010106 Recombination-promoting nuclease RpnA YPDSF_4138 IPR006118 Recombinase, conserved site YPDSF_4138 IPR006119 Resolvase, N-terminal catalytic domain YPDSF_4138 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily YPDSF_4138 IPR006120 Resolvase, HTH domain YPDSF_4140 IPR025669 AAA domain YPDSF_4140 IPR041250 ParA helix turn helix domain YPDSF_4140 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPDSF_4141 IPR004437 ParB/RepB/Spo0J partition protein YPDSF_4141 IPR003115 ParB/Sulfiredoxin YPDSF_4141 IPR036086 ParB/Sulfiredoxin superfamily YPDSF_4141 IPR014884 ParB protein family, C-terminal YPDSF_4143 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPDSF_4143 IPR001091 Restriction/modification DNA-methylase YPDSF_4143 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPDSF_4143 IPR002941 DNA methylase N-4/N-6 YPDSF_4145 IPR009811 Protein of unknown function DUF1380 YPDSF_4148 IPR038612 YkfF-like domain superfamily YPDSF_4148 IPR009253 Protein of unknown function DUF905 YPDSF_4149 IPR004437 ParB/RepB/Spo0J partition protein YPDSF_4149 IPR003115 ParB/Sulfiredoxin YPDSF_4149 IPR036086 ParB/Sulfiredoxin superfamily YPDSF_4154 IPR008966 Adhesion domain superfamily YPDSF_4154 IPR015335 F1 capsule antigen YPDSF_4154 IPR038699 F1 capsule antigen superfamily YPDSF_4155 IPR018062 HTH domain AraC-type, conserved site YPDSF_4155 IPR018060 DNA binding HTH domain, AraC-type YPDSF_4155 IPR009057 Homeobox-like domain superfamily YPDSF_4155 IPR029442 GyrI-like small molecule binding domain YPDSF_4155 IPR011256 Regulatory factor, effector binding domain superfamily YPDSF_4155 IPR020449 Transcription regulator HTH, AraC- type YPDSF_4158 IPR001126 UmuC domain YPDSF_4158 IPR025188 Domain of unknown function DUF4113 YPDSF_4158 IPR017961 DNA polymerase, Y-family, little finger domain YPDSF_4158 IPR036775 DNA polymerase, Y-family, little finger domain superfamily